Psyllid ID: psy2947

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-
Protein Sequence
MADPAKNNEGFQATRNKQGVGFSRRSSFKNKNSTPQTACQRNCSLEVGGICSHIWIPQYFSHAFLLSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEVLRKQKKLHQPSRLQDLAVQSVIASKENFFEPGLFPGPLVDYIAREYNQYHVCHYCNSAEPLDRSGYKVFTFKTPYLEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAPVPDYY
Secondary Structure (PSIPRED)
cccccccHHHHHHHHccccccccccccccccccccccHHHHccccccccccHHHcccccccEEcccccccccccHHHHHcccccEEEccccccccccHHHHHcccccEEccccccccccccccccccccccccccccccccccccHHHHccccccEEEEccccccccHHHHHHHHcHHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHHccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHccccccHHHHHHHHHHccccccHHHHHHHHHHccccccHHHHHHHHHHHccccccHHHHHHHHHHcccccccEEEHHHHHHHHHHHccccccHHHHHHHHHHHcccccccccHHHHHHHHHHccccccHHHHHHHHHHHcccccccccHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEccccccccccccccccccccccccHccccccEEEcccccHEHccHHHHHHHHHHccccccccEEEEcccEEEEEEEcccccccccccccccccEEEEEccccHHcccccHHHHHHHHHHHHHHHcccccccccccEEcHHHHHHHHcccccccHHHHHHHHHHccccccccccHHHHHHHHHHHccccHHcccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccccHHHHHHccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccHHHHHHHHHHccccccccccHHHHHHHHHccccHHHHHHHHHHHcccccccEEHHHHHHHHHHHHHccccHHHHHHHHHHHccccccEEcHHHHHHHHHHccccccHHHHHHHHHHHcccccccEEHHHHHHHHccHHHHcc
Coil and Loop (DISEMBL)
madpaknnegfqatrnkqgvgfsrrssfknknstpqtacqrncslevggicshiwipqyFSHAFLLSlsytpigrrifkCDTVEVLSlksnsltslppdigrltnLRVLCltdnclqnasipFTLTFCKNLTHLyldnnlldalpgfllsmpqldtvyrhgnhnyfkSTFMWYHSDIHARIRSTSTRDEVLRKQkklhqpsrlqDLAVQSVIASkenffepglfpgplVDYIAREYnqyhvchycnsaepldrsgykvftfktpyleFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAekggklsfpDFLKVMHthskaedipKEVVDAFKaadttksgklsfpDFLKVMHthskaedipKEVVDAFKaadttksgtvpaKYLKHVLVNwgeglsskeVDQIFREANVTMNSKVRYEDFVkiacapvpdyy
Flexible Loop (DISEMBL)
madpaknnegfqatrnkqgvgfsrrssfknknstpqtacQRNCSLEVGGICSHIWIPQYFSHAFLLSLSYTPIGRRIFKCDTVEVLSLksnsltslppdigRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEVLRKqkklhqpsrlqdLAVQSVIASKENFFEPGLFPGPLVDYIAREYNQYHVCHYCNSAEPLDRSGYKVFTFKTPYLEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHThskaedipkEVVDAFKAAdttksgklsfpDFLKVMHThskaedipkEVVDAFKAAdttksgtvpakyLKHVLVNWgeglsskevDQIFREANvtmnskvryedfvkiacapvpdyy
Low Complexity Region (SEG)
MADPAKNNEGFQATRNKQGVGFSRRSSFKNKNSTPQTACQRNCSLEVGGICSHIWIPQYFSHAFLLSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEVLRKQKKLHQPSRLQDLAVQSVIASKENFFEPGLFPGPLVDYIAREYNQYHVCHYCNSAEPLDRSGYKVFTFKTPYLEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAPVPDYY
Disordered region (IsUnstruct)
**************************************CQRNCSLEVGGICSHIWIPQYFSHAFLLSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIR**********************DLAVQSVIASKENFFEPGLFPGPLVDYIAREYNQYHVCHYCNSAEPLDRSGYKVFTFKTPYLEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHS****IPKEVVDAFKA********LSFPDFLKVMHTH*****IPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAPV****
Disordered Region (DISOPRED)
****AKN*EGFQATRNKQGVGFSRRSSFKNKNSTPQTACQRNCSLEVGGICSHIWIPQYFSHAFLLSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEVLRKQKKLHQPSRLQDLAVQSVIASKENFFEPGLFPGPLVDYIAREYNQYHVCHYCNSAEPLDRSGYKVFTFKTPYLEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKV*******************AADTTKSGKLSFPDFLKV***************DAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAPV****
Disordered Region (DISEMBL)
********EGFQATRNKQ*********************QRNCSLEVGGICSHIWIPQYFSHAFLLSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEVLRKQKKLHQPSRLQDLAVQSVIASKENFFEPGLFPGPLVDYIAREYNQYHVCHYCNSAEPLDRSGYKVFTFKTPYLEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAPVPDYY
Disordered Region (DISPRO)
*********************************TPQTACQRNCSLEVGGICSHIWIPQYFSHAFLLSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEVLRKQKKLHQPSRLQDLAVQSVIASKENFFEPGLFPGPLVDYIAREYNQYHVCHYCNSAEPLDRSGYKVFTFKTPYLEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAP*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MADPAKNNEGFQATRNKQGVGFSRRSSFKNKNSTPQTACQRNCSLEVGGICSHIWIPQYFSHAFLLSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEVLRKQKKLHQPSRLQDLAVQSVIASKENFFEPGLFPGPLVDYIAREYNQYHVCHYCNSAEPLDRSGYKVFTFKTPYLEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAPVPDYY
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	441	2.2.26 [Sep-21-2011]
A8I1Q0	149	Calmodulin OS=Heterocapsa	N/A	N/A	0.306	0.906	0.345	9e-21
A3E4D8	149	Calmodulin OS=Prorocentru	N/A	N/A	0.306	0.906	0.345	1e-20
A3E3H0	149	Calmodulin OS=Pfiesteria	N/A	N/A	0.306	0.906	0.345	1e-20
A3E4F9	149	Calmodulin OS=Karlodinium	N/A	N/A	0.306	0.906	0.345	1e-20
A4UHC0	149	Calmodulin OS=Alexandrium	N/A	N/A	0.306	0.906	0.345	1e-20
P24044	149	Calmodulin OS=Plasmodium	yes	N/A	0.306	0.906	0.339	1e-20
P62203	149	Calmodulin OS=Plasmodium	yes	N/A	0.306	0.906	0.339	1e-20
P13868	149	Calmodulin-1 OS=Solanum t	N/A	N/A	0.308	0.912	0.335	2e-20
Q40302	149	Calmodulin OS=Macrocystis	N/A	N/A	0.306	0.906	0.333	3e-20
P27166	149	Calmodulin OS=Stylonychia	N/A	N/A	0.306	0.906	0.345	3e-20

>sp|A8I1Q0|CALM_HETTR Calmodulin OS=Heterocapsa triquetra PE=2 SV=1

 Score =  101 bits (252), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 89/171 (52%), Gaps = 36/171 (21%)

Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+  + E               
Sbjct: 12  EFKEAFSLFDKDGDGTITT-KELGTVMRSLGQNPTEAELQDMINE--------------- 55

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                              D+  +G + FP+FL +M    K  D  +E+++AFK  D   
Sbjct: 56  ------------------VDSDGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDG 97

Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           +G + A  L+HV+ N GE L+ +EVD++ REA+V  + ++ YE+FVK+  A
Sbjct: 98  NGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMA 148

Calmodulin mediates the control of a large number of enzymes, ion channels and other proteins by Ca(2+). Among the enzymes to be stimulated by the calmodulin-Ca(2+) complex are a number of protein kinases and phosphatases.
Heterocapsa triquetra (taxid: 66468)

>sp|A3E4D8|CALM_PROMN Calmodulin OS=Prorocentrum minimum PE=2 SV=1

 Score =  101 bits (251), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 88/171 (51%), Gaps = 36/171 (21%)

Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+  + E               
Sbjct: 12  EFKEAFSLFDKDGDGTITT-KELGTVMRSLGQNPTEAELQDMINE--------------- 55

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                              D   +G + FP+FL +M    K  D  +E+++AFK  D   
Sbjct: 56  ------------------VDADGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDG 97

Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           +G + A  L+HV+ N GE L+ +EVD++ REA+V  + ++ YE+FVK+  A
Sbjct: 98  NGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMA 148

Calmodulin mediates the control of a large number of enzymes, ion channels and other proteins by Ca(2+). Among the enzymes to be stimulated by the calmodulin-Ca(2+) complex are a number of protein kinases and phosphatases.

Prorocentrum minimum (taxid: 39449)

>sp|A3E3H0|CALM_PFIPI Calmodulin OS=Pfiesteria piscicida PE=2 SV=1

 Score =  101 bits (251), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 88/171 (51%), Gaps = 36/171 (21%)

Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+  + E               
Sbjct: 12  EFKEAFSLFDKDGDGTITT-KELGTVMRSLGQNPTEAELQDMINE--------------- 55

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                              D   +G + FP+FL +M    K  D  +E+++AFK  D   
Sbjct: 56  ------------------VDADGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDG 97

Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           +G + A  L+HV+ N GE L+ +EVD++ REA+V  + ++ YE+FVK+  A
Sbjct: 98  NGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMA 148

Calmodulin mediates the control of a large number of enzymes, ion channels and other proteins by Ca(2+). Among the enzymes to be stimulated by the calmodulin-Ca(2+) complex are a number of protein kinases and phosphatases.

Pfiesteria piscicida (taxid: 71001)

>sp|A3E4F9|CALM_KARMI Calmodulin OS=Karlodinium micrum PE=2 SV=1

 Score =  101 bits (251), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 88/171 (51%), Gaps = 36/171 (21%)

Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+  + E               
Sbjct: 12  EFKEAFSLFDKDGDGTITT-KELGTVMRSLGQNPTEAELQDMINE--------------- 55

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                              D   +G + FP+FL +M    K  D  +E+++AFK  D   
Sbjct: 56  ------------------VDADGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDG 97

Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           +G + A  L+HV+ N GE L+ +EVD++ REA+V  + ++ YE+FVK+  A
Sbjct: 98  NGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMA 148

Calmodulin mediates the control of a large number of enzymes, ion channels and other proteins by Ca(2+). Among the enzymes to be stimulated by the calmodulin-Ca(2+) complex are a number of protein kinases and phosphatases.

Karlodinium micrum (taxid: 342587)

>sp|A4UHC0|CALM_ALEFU Calmodulin OS=Alexandrium fundyense PE=2 SV=1

 Score =  101 bits (251), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 88/171 (51%), Gaps = 36/171 (21%)

Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+  + E               
Sbjct: 12  EFKEAFSLFDKDGDGTITT-KELGTVMRSLGQNPTEAELQDMINE--------------- 55

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                              D   +G + FP+FL +M    K  D  +E+++AFK  D   
Sbjct: 56  ------------------VDADGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDG 97

Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           +G + A  L+HV+ N GE L+ +EVD++ REA+V  + ++ YE+FVK+  A
Sbjct: 98  NGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMA 148

Calmodulin mediates the control of a large number of enzymes, ion channels and other proteins by Ca(2+). Among the enzymes to be stimulated by the calmodulin-Ca(2+) complex are a number of protein kinases and phosphatases.

Alexandrium fundyense (taxid: 2932)

>sp|P24044|CALM_PLAFA Calmodulin OS=Plasmodium falciparum PE=3 SV=4

 Score =  101 bits (251), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 89/171 (52%), Gaps = 36/171 (21%)

Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+  + E               
Sbjct: 12  EFKEAFSLFDKDGDGTITT-KELGTVMRSLGQNPTEAELQDMINE--------------- 55

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                              DT  +G + FP+FL +M    K  D  +E+++AF+  D   
Sbjct: 56  ------------------IDTDGNGTIDFPEFLTLMARKLKDTDTEEELIEAFRVFDRDG 97

Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
            G + A  L+HV+ N GE L+++EVD++ REA++  + ++ YE+FVK+  A
Sbjct: 98  DGYISADELRHVMTNLGEKLTNEEVDEMIREADIDGDGQINYEEFVKMMIA 148

Calmodulin mediates the control of a large number of enzymes, ion channels and other proteins by Ca(2+). Among the enzymes to be stimulated by the calmodulin-Ca(2+) complex are a number of protein kinases and phosphatases.

Plasmodium falciparum (taxid: 5833)

>sp|P62203|CALM_PLAF7 Calmodulin OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0323 PE=3 SV=2

 Score =  101 bits (251), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 89/171 (52%), Gaps = 36/171 (21%)

Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+  + E               
Sbjct: 12  EFKEAFSLFDKDGDGTITT-KELGTVMRSLGQNPTEAELQDMINE--------------- 55

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                              DT  +G + FP+FL +M    K  D  +E+++AF+  D   
Sbjct: 56  ------------------IDTDGNGTIDFPEFLTLMARKLKDTDTEEELIEAFRVFDRDG 97

Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
            G + A  L+HV+ N GE L+++EVD++ REA++  + ++ YE+FVK+  A
Sbjct: 98  DGYISADELRHVMTNLGEKLTNEEVDEMIREADIDGDGQINYEEFVKMMIA 148

Calmodulin mediates the control of a large number of enzymes, ion channels and other proteins by Ca(2+). Among the enzymes to be stimulated by the calmodulin-Ca(2+) complex are a number of protein kinases and phosphatases.

Plasmodium falciparum (isolate 3D7) (taxid: 36329)

>sp|P13868|CALM1_SOLTU Calmodulin-1 OS=Solanum tuberosum GN=PCM1 PE=1 SV=2

 Score =  100 bits (250), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 89/170 (52%), Gaps = 34/170 (20%)

Query: 267 EFRECFFLFARNGT-IKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHT 325
           EF+E F LF ++G    T  EL  +MRSLG +PT AEL+  ++E                
Sbjct: 12  EFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMISE---------------- 55

Query: 326 HSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKS 385
                            AD  ++G + FP+FL +M    K  D  +E+ +AFK  D  ++
Sbjct: 56  -----------------ADADQNGTIDFPEFLNLMARKMKDTDSEEELKEAFKVFDKDQN 98

Query: 386 GTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           G + A  L+HV+ N GE L+ +EVD++ REA++  + +V YE+FV++  A
Sbjct: 99  GFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVRMMLA 148

Calmodulin mediates the control of a large number of enzymes, ion channels and other proteins by Ca(2+). Among the enzymes to be stimulated by the calmodulin-Ca(2+) complex are a number of protein kinases and phosphatases.

Solanum tuberosum (taxid: 4113)

>sp|Q40302|CALM_MACPY Calmodulin OS=Macrocystis pyrifera PE=2 SV=3

 Score =  100 bits (248), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 88/171 (51%), Gaps = 36/171 (21%)

Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+  + E               
Sbjct: 12  EFKEAFSLFDKDGDGTITT-KELGTVMRSLGQNPTEAELQDMINE--------------- 55

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                              D   +G + FP+FL +M    K  D  +E+++AFK  D   
Sbjct: 56  ------------------VDADGNGTIDFPEFLTMMARKMKDTDSEEEIIEAFKVFDKDG 97

Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           +G + A  L+H++ N GE L+ +EVD++ REA++  + ++ YE+FVK+  A
Sbjct: 98  NGFISAAELRHIMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMMA 148

Calmodulin mediates the control of a large number of enzymes, ion channels and other proteins by Ca(2+). Among the enzymes to be stimulated by the calmodulin-Ca(2+) complex are a number of protein kinases and phosphatases.

Macrocystis pyrifera (taxid: 35122)

>sp|P27166|CALM_STYLE Calmodulin OS=Stylonychia lemnae PE=3 SV=2

 Score =  100 bits (248), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 87/171 (50%), Gaps = 36/171 (21%)

Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+  + E               
Sbjct: 12  EFKEAFSLFDKDGDGTITT-KELGTVMRSLGQNPTEAELQDMINE--------------- 55

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                              D   +G + FP+FL +M    K  D  +E+V+AFK  D   
Sbjct: 56  ------------------VDADGNGTIDFPEFLSLMARKMKDTDTEEELVEAFKVFDRDG 97

Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           +G + A  L+HV+ N GE L+ +EVD++ REA+V  +  + YE+FV++  A
Sbjct: 98  NGLISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGHINYEEFVRMMMA 148

Calmodulin mediates the control of a large number of enzymes, ion channels and other proteins by Ca(2+). Among the enzymes to be stimulated by the calmodulin-Ca(2+) complex are a number of protein kinases and phosphatases.

Stylonychia lemnae (taxid: 5949)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	441
332029085	148	Calmodulin-like protein 4 [Acromyrmex ec	0.312	0.932	0.571	2e-51
345479513	149	PREDICTED: calmodulin-like protein 4-lik	0.312	0.926	0.554	3e-51
322799154	154	hypothetical protein SINV_05376 [Solenop	0.312	0.896	0.565	3e-51
328783251	149	PREDICTED: calmodulin-like protein 4-lik	0.312	0.926	0.571	4e-51
340725539	149	PREDICTED: calmodulin-like protein 4-lik	0.312	0.926	0.565	7e-51
332374518	149	unknown [Dendroctonus ponderosae]	0.312	0.926	0.588	1e-50
307185662	199	Calmodulin-like protein 4 [Camponotus fl	0.344	0.763	0.534	1e-50
357605030	154	putative calmodulin [Danaus plexippus]	0.312	0.896	0.565	4e-50
383858567	149	PREDICTED: calmodulin-like protein 4-lik	0.312	0.926	0.565	6e-50
242005228	149	calmodulin-2, putative [Pediculus humanu	0.312	0.926	0.571	2e-49

>gi|332029085|gb|EGI69099.1| Calmodulin-like protein 4 [Acromyrmex echinatior]

 Score =  209 bits (532), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 100/175 (57%), Positives = 125/175 (71%), Gaps = 37/175 (21%)

Query: 267 EFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTH 326
           EFRECF+LFAR+G I+TLDEL++IMRSLG+SPTIAEL KY+ +KGGK             
Sbjct: 11  EFRECFYLFARSGQIRTLDELTIIMRSLGLSPTIAELNKYMKDKGGK------------- 57

Query: 327 SKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSG 386
                                   +SF DFL+VMH  ++AED+PKEV+ AF+AADT+ SG
Sbjct: 58  ------------------------MSFADFLEVMHLQTRAEDLPKEVIKAFQAADTSHSG 93

Query: 387 TVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAPVPDYY 441
           T+PA+ L H+L++WGE LSSKEV+QIFREANV++N  V+YEDFVKIACAPVPDYY
Sbjct: 94  TIPARQLAHMLLHWGEQLSSKEVEQIFREANVSLNGHVKYEDFVKIACAPVPDYY 148

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345479513|ref|XP_001607254.2| PREDICTED: calmodulin-like protein 4-like [Nasonia vitripennis]

 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 97/175 (55%), Positives = 126/175 (72%), Gaps = 37/175 (21%)

Query: 267 EFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTH 326
           EFRECF+L+AR+G I+TLDEL++IMRSLG+SPTIAEL KYL +KGGK             
Sbjct: 12  EFRECFYLYARSGQIRTLDELTIIMRSLGLSPTIAELNKYLKDKGGK------------- 58

Query: 327 SKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSG 386
                                   +SF DFL+ MH  ++AED+PKEV++AF+AADT+++G
Sbjct: 59  ------------------------MSFADFLEAMHLQTRAEDLPKEVIEAFRAADTSRTG 94

Query: 387 TVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAPVPDYY 441
           T+PA+ L H+L+ WGE LS+KEV+QIFREANV++N +V+YEDFVKIACAPVPDYY
Sbjct: 95  TIPARQLAHMLLRWGEQLSNKEVEQIFREANVSLNGQVKYEDFVKIACAPVPDYY 149

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322799154|gb|EFZ20593.1| hypothetical protein SINV_05376 [Solenopsis invicta]

 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 99/175 (56%), Positives = 125/175 (71%), Gaps = 37/175 (21%)

Query: 267 EFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTH 326
           EFRECF+LFAR+G I+TLDEL++IMRSLG+SPTIAEL KY+ +KGGK             
Sbjct: 17  EFRECFYLFARSGQIRTLDELTIIMRSLGLSPTIAELNKYMKDKGGK------------- 63

Query: 327 SKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSG 386
                                   +SF DFL+VMH  ++AED+PKE++ AF+AADT+ SG
Sbjct: 64  ------------------------MSFADFLEVMHFQTRAEDLPKEIIKAFQAADTSHSG 99

Query: 387 TVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAPVPDYY 441
           T+PA+ L H+L++WGE LSSKEV+QIFREANV++N  V+YEDFVKIACAPVPDYY
Sbjct: 100 TIPARQLAHMLLHWGEQLSSKEVEQIFREANVSLNGHVKYEDFVKIACAPVPDYY 154

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328783251|ref|XP_394088.3| PREDICTED: calmodulin-like protein 4-like [Apis mellifera] gi|328794448|ref|XP_625045.2| PREDICTED: calmodulin-like protein 4-like [Apis mellifera] gi|380024683|ref|XP_003696122.1| PREDICTED: calmodulin-like protein 4-like [Apis florea]

 Score =  208 bits (530), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 100/175 (57%), Positives = 125/175 (71%), Gaps = 37/175 (21%)

Query: 267 EFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTH 326
           EFRECF+LFARNG I+TLDEL++IMRSLG+SPTIAEL KYL +KGGK             
Sbjct: 12  EFRECFYLFARNGQIRTLDELTIIMRSLGLSPTIAELNKYLKDKGGK------------- 58

Query: 327 SKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSG 386
                                   +SF DFL+VMH  ++AED+PKEV+DAF+AAD  ++G
Sbjct: 59  ------------------------MSFADFLEVMHLQTRAEDLPKEVIDAFQAADKFRTG 94

Query: 387 TVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAPVPDYY 441
           T+PA+ L H+L++WGE LS+KEV+QIFREANV+ N +V+YEDFVKIACAPVPDYY
Sbjct: 95  TIPARQLAHMLLHWGEQLSNKEVEQIFREANVSPNGQVKYEDFVKIACAPVPDYY 149

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340725539|ref|XP_003401126.1| PREDICTED: calmodulin-like protein 4-like isoform 1 [Bombus terrestris] gi|350415283|ref|XP_003490591.1| PREDICTED: calmodulin-like protein 4-like [Bombus impatiens]

 Score =  207 bits (528), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 99/175 (56%), Positives = 125/175 (71%), Gaps = 37/175 (21%)

Query: 267 EFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTH 326
           EFRECF+LFARNG I+TLDEL++IMRSLG+SPTIAEL KYL +KGG++            
Sbjct: 12  EFRECFYLFARNGQIRTLDELTIIMRSLGLSPTIAELNKYLKDKGGRM------------ 59

Query: 327 SKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSG 386
                                    SF DFL+VMH  ++AED+PKEV+DAF+AAD  ++G
Sbjct: 60  -------------------------SFADFLEVMHLQTRAEDLPKEVIDAFQAADKFRTG 94

Query: 387 TVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAPVPDYY 441
           T+PA+ L H+L++WGE LS+KEV+QIFREANV+ N +V+YEDFVKIACAPVPDYY
Sbjct: 95  TIPARQLAHMLLHWGEQLSNKEVEQIFREANVSPNGQVKYEDFVKIACAPVPDYY 149

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332374518|gb|AEE62400.1| unknown [Dendroctonus ponderosae]

 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 103/175 (58%), Positives = 120/175 (68%), Gaps = 37/175 (21%)

Query: 267 EFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTH 326
           EFRECFFLFAR+G IK+LDEL+VIMRSLG+SPTI EL  Y  +KGGK             
Sbjct: 12  EFRECFFLFARSGHIKSLDELTVIMRSLGLSPTINELAGYFKQKGGK------------- 58

Query: 327 SKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSG 386
                                   +SFPDFL+VMH HS+ E++PKE+VDAFKAADT K G
Sbjct: 59  ------------------------MSFPDFLEVMHIHSRVENLPKEIVDAFKAADTEKRG 94

Query: 387 TVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAPVPDYY 441
              AK+L+H+L NWGE LSSKEVD+IFREANV  NS V+YEDFVKIACAP+PDYY
Sbjct: 95  VTSAKHLRHLLQNWGERLSSKEVDRIFREANVNNNSMVKYEDFVKIACAPIPDYY 149

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307185662|gb|EFN71584.1| Calmodulin-like protein 4 [Camponotus floridanus]

 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 101/189 (53%), Positives = 129/189 (68%), Gaps = 37/189 (19%)

Query: 253 RSGYKVFTFKTPYLEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGG 312
           R+G   +  +    EFRECF+LFAR+G I+TLDEL++IMRSLG+SPTIAEL KY+ +KGG
Sbjct: 48  RAGLARYFREEDIDEFRECFYLFARSGQIRTLDELTIIMRSLGLSPTIAELNKYMKDKGG 107

Query: 313 KLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKE 372
           K                                     +SF DFL+VMH  ++AED+PKE
Sbjct: 108 K-------------------------------------MSFADFLEVMHLQTRAEDLPKE 130

Query: 373 VVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           V+ AF+AAD + SGT+PA+ L H+L++WGE LSSKEV+QIFREANV++N  V+YEDFVKI
Sbjct: 131 VIKAFQAADVSHSGTIPARQLAHMLLHWGEQLSSKEVEQIFREANVSLNGYVKYEDFVKI 190

Query: 433 ACAPVPDYY 441
           ACAPVPDYY
Sbjct: 191 ACAPVPDYY 199

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357605030|gb|EHJ64442.1| putative calmodulin [Danaus plexippus]

 Score =  205 bits (522), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 99/175 (56%), Positives = 118/175 (67%), Gaps = 37/175 (21%)

Query: 267 EFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTH 326
           EFRECF+LFAR+G I +LDEL+V+MRSLGMSPTI EL  YL  KGGK             
Sbjct: 17  EFRECFYLFARSGQITSLDELTVVMRSLGMSPTIQELTGYLKGKGGK------------- 63

Query: 327 SKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSG 386
                                   +SF DFL+VMH HS+AE++P EVVDAF+A D+ + G
Sbjct: 64  ------------------------MSFADFLEVMHIHSRAENLPHEVVDAFRAGDSERRG 99

Query: 387 TVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAPVPDYY 441
            +PA+ L+H+L NWGEGLSS+E+D IFREANVT N  VRYEDFVKIACAPVPDYY
Sbjct: 100 VIPARQLRHLLQNWGEGLSSREIDNIFREANVTNNGTVRYEDFVKIACAPVPDYY 154

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858567|ref|XP_003704772.1| PREDICTED: calmodulin-like protein 4-like [Megachile rotundata]

 Score =  204 bits (520), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 99/175 (56%), Positives = 123/175 (70%), Gaps = 37/175 (21%)

Query: 267 EFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTH 326
           EFRECF+LFARNG I+TLDEL++IMRSLG+SPTIAEL KYL +KGGK             
Sbjct: 12  EFRECFYLFARNGHIRTLDELTIIMRSLGLSPTIAELNKYLKDKGGK------------- 58

Query: 327 SKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSG 386
                                   +SF DFL+ MH  ++AED+PKEV++AF+AAD  +SG
Sbjct: 59  ------------------------MSFADFLEAMHLQTRAEDLPKEVIEAFQAADKFRSG 94

Query: 387 TVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAPVPDYY 441
           T+PA+ L H+L++WGE LS+KEV+QIFREANV+ N  V+YEDFVKIACAPVPDYY
Sbjct: 95  TIPARQLAHMLLHWGEQLSTKEVEQIFREANVSPNGHVKYEDFVKIACAPVPDYY 149

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242005228|ref|XP_002423473.1| calmodulin-2, putative [Pediculus humanus corporis] gi|212506561|gb|EEB10735.1| calmodulin-2, putative [Pediculus humanus corporis]

 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 100/175 (57%), Positives = 116/175 (66%), Gaps = 37/175 (21%)

Query: 267 EFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTH 326
           EFRECF+LFAR+G I TLDEL+V+MRSLGMSPTI EL KYL +KGGK             
Sbjct: 12  EFRECFYLFARSGKINTLDELTVVMRSLGMSPTIGELNKYLKDKGGK------------- 58

Query: 327 SKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSG 386
                                   +SF DFL VMH HS+AED+PKEV+DAF A D  K  
Sbjct: 59  ------------------------MSFADFLDVMHAHSQAEDLPKEVIDAFLAGDLDKKK 94

Query: 387 TVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAPVPDYY 441
           T+ A++LKH+L+ WGE LS KEVDQIFREAN+ +N  VRYEDFVKI CAPVPDYY
Sbjct: 95  TISARHLKHLLLYWGEKLSHKEVDQIFREANININGMVRYEDFVKIVCAPVPDYY 149

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	441
FB|FBgn0038830	149	CG17272 [Drosophila melanogast	0.299	0.885	0.536	1.4e-32
UNIPROTKB|I3LQD0	153	CALML4 "Uncharacterized protei	0.303	0.875	0.370	2e-17
UNIPROTKB|F1PQ59	154	CALML4 "Uncharacterized protei	0.326	0.935	0.362	5.4e-17
UNIPROTKB|Q3T0E8	153	CALML4 "Calmodulin-like protei	0.303	0.875	0.362	1.2e-16
TAIR|locus:2156045	175	CAM1 "calmodulin 1" [Arabidops	0.367	0.925	0.311	1.5e-16
MGI|MGI:1922850	153	Calml4 "calmodulin-like 4" [Mu	0.303	0.875	0.362	4.1e-16
UNIPROTKB|F1SJH3	124	LOC100738338 "Uncharacterized	0.213	0.758	0.425	3.1e-15
UNIPROTKB|Q96GE6	196	CALML4 "Calmodulin-like protei	0.303	0.683	0.355	4e-15
UNIPROTKB|P13868	149	PCM1 "Calmodulin-1" [Solanum t	0.229	0.677	0.376	6.6e-15
ZFIN|ZDB-GENE-081022-9	153	calml4a "calmodulin-like 4a" [	0.303	0.875	0.325	1.1e-14

FB|FBgn0038830 CG17272 [Drosophila melanogaster (taxid:7227)]

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 73/136 (53%), Positives = 91/136 (66%)

Query:   306 YLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSK 365
             YL  + G+++  D L V+          +E+V   K     K+GK+SF DFL +MH HSK
Sbjct:    18 YLFARSGQINNLDELTVIMRSLGLSPTIQELVSYLKQ----KNGKMSFADFLDIMHQHSK 73

Query:   366 AEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVR 425
              E +P EV+ AFKAAD    GT+ A+ L+++L NWGEGLS +EVD IFREANV  NS VR
Sbjct:    74 VESLPDEVIAAFKAADPQNKGTISARQLRNLLQNWGEGLSMREVDNIFREANVNNNSTVR 133

Query:   426 YEDFVKIACAPVPDYY 441
             Y DFVKIACAPVPDYY
Sbjct:   134 YADFVKIACAPVPDYY 149

GO:0005509 "calcium ion binding" evidence=ISS

UNIPROTKB|I3LQD0 CALML4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 219 (82.2 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 50/135 (37%), Positives = 71/135 (52%)

Query:   306 YLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSK 365
             Y  ++ GK+   D L VM     A   P E     +     K+G+L F  FL +MH   K
Sbjct:    20 YDKQQRGKIKATDLLTVMRCLG-ASPTPVEAQRHLQTHKIDKNGELDFSTFLTIMHMQMK 78

Query:   366 AEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVR 425
              ED  KE++ A   AD  K G + A  L+  L+  GE L+ KEVD +F+EA++  N KV+
Sbjct:    79 QEDPKKEILLAMLMADKEKKGYIMASELRSKLMKLGEKLTHKEVDDLFKEADIEPNGKVK 138

Query:   426 YEDFVKIACAPVPDY 440
             Y++F+     PV DY
Sbjct:   139 YDEFIHKVTIPVQDY 153

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|F1PQ59 CALML4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 215 (80.7 bits), Expect = 5.4e-17, P = 5.4e-17
 Identities = 54/149 (36%), Positives = 78/149 (52%)

Query:   296 MSPTIAELKK----YLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKL 351
             +S   AE K+    Y  E+ G++   D L VM     A   P EV    ++    + G+L
Sbjct:     7 LSRLCAEYKECFSLYDKEQRGRIKATDLLVVMRCLG-ASPTPGEVQRHLQSHKIDRDGEL 65

Query:   352 SFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQ 411
              F  FL +MH   K ED  KE++ A   AD  K G + A  L+  L+  GE L+ KEVD 
Sbjct:    66 DFSTFLTIMHMQIKQEDPKKEILLAMLMADKEKKGYIMASELRSKLMKLGEKLTHKEVDD 125

Query:   412 IFREANVTMNSKVRYEDFVKIACAPVPDY 440
             +F+EAN+  N KV+Y++F+     PV D+
Sbjct:   126 LFKEANIEPNGKVKYDEFIHKITIPVWDH 154

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|Q3T0E8 CALML4 "Calmodulin-like protein 4" [Bos taurus (taxid:9913)]

 Score = 212 (79.7 bits), Expect = 1.2e-16, P = 1.2e-16
 Identities = 49/135 (36%), Positives = 71/135 (52%)

Query:   306 YLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSK 365
             Y  ++ GK+   D L VM     A   P E     +     ++G+L F  FL +MH   K
Sbjct:    20 YDKQQRGKIKATDLLTVMRCLG-ASPTPGEAQRHLQTHRIDRNGELDFSTFLTIMHMQIK 78

Query:   366 AEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVR 425
              ED  KE++ A   AD  K G + A  L+  L+  GE L+ KEV+ +FREA +  N KV+
Sbjct:    79 QEDPKKEILLAMLMADKEKKGYIMASELRSKLMQLGEKLTHKEVEDLFREAGIEPNGKVK 138

Query:   426 YEDFVKIACAPVPDY 440
             Y++F++    PV DY
Sbjct:   139 YDEFIQKLTIPVRDY 153

GO:0005509 "calcium ion binding" evidence=IEA

TAIR|locus:2156045 CAM1 "calmodulin 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 1.5e-16, P = 1.5e-16
 Identities = 53/170 (31%), Positives = 88/170 (51%)

Query:   267 EFRECFFLFARNGTIKTLDELSVIMRSLGMS-PTIAELKKYLAEKGGKLSFPDFLKVMHT 325
             EF+E F LF ++G +  L +L    + L     T  EL        G ++  +   VM +
Sbjct:    12 EFKEAFSLFDKDGDVFVLSDLGFDFKRLSNCLETTPELSH------GCITTKELGTVMRS 65

Query:   326 HSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKS 385
               +      E+ D     D   +G + FP+FL +M    K  D  +E+ +AF+  D  ++
Sbjct:    66 LGQ-NPTEAELQDMINEVDADGNGTIDFPEFLNLMAKKMKDTDSEEELKEAFRVFDKDQN 124

Query:   386 GTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
             G + A  L+HV+ N GE L+ +EV+++ REA+V  + ++ YE+FVKI  A
Sbjct:   125 GFISAAELRHVMTNLGEKLTDEEVEEMIREADVDGDGQINYEEFVKIMMA 174

GO:0005509 "calcium ion binding" evidence=IEA;ISS;NAS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=IEP;RCA

GO:0019722 "calcium-mediated signaling" evidence=RCA

GO:0030048 "actin filament-based movement" evidence=RCA

GO:0051645 "Golgi localization" evidence=RCA

GO:0051646 "mitochondrion localization" evidence=RCA

GO:0060151 "peroxisome localization" evidence=RCA

GO:0005513 "detection of calcium ion" evidence=ISS

MGI|MGI:1922850 Calml4 "calmodulin-like 4" [Mus musculus (taxid:10090)]

 Score = 207 (77.9 bits), Expect = 4.1e-16, P = 4.1e-16
 Identities = 49/135 (36%), Positives = 70/135 (51%)

Query:   306 YLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSK 365
             Y  ++ GK+   D L  M     A   P EV    +     K+G+L F  FL +MH   K
Sbjct:    20 YDKQQRGKIKATDLLVSMRCLG-ASPTPGEVQRHLQTHGIDKNGELDFSTFLTIMHMQIK 78

Query:   366 AEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVR 425
              ED  KE++ A   AD  K G + A  L+  L+  GE L+ KEVD +F+EA +  N +V+
Sbjct:    79 QEDPKKEILLAMLMADKEKKGYIMASELRSKLMKLGEKLTHKEVDDLFKEAGIEPNGQVK 138

Query:   426 YEDFVKIACAPVPDY 440
             Y+ F++    PV DY
Sbjct:   139 YDTFIQRITIPVRDY 153

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|F1SJH3 LOC100738338 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 199 (75.1 bits), Expect = 3.1e-15, P = 3.1e-15
 Identities = 40/94 (42%), Positives = 57/94 (60%)

Query:   347 KSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSS 406
             K+G+L F  FL +MH   K ED  KE++ A   AD  K G + A  L+  L+  GE L+ 
Sbjct:    31 KNGELDFSTFLTIMHMQMKQEDPKKEILLAMLMADKEKKGYIMASELRSKLMKLGEKLTH 90

Query:   407 KEVDQIFREANVTMNSKVRYEDFVKIACAPVPDY 440
             KEVD +F+EA++  N KV+Y++F+     PV DY
Sbjct:    91 KEVDDLFKEADIEPNGKVKYDEFIHKVTIPVQDY 124

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|Q96GE6 CALML4 "Calmodulin-like protein 4" [Homo sapiens (taxid:9606)]

 Score = 198 (74.8 bits), Expect = 4.0e-15, P = 4.0e-15
 Identities = 48/135 (35%), Positives = 68/135 (50%)

Query:   306 YLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSK 365
             Y  ++ GK+   D +  M     A   P EV    +      +G+L F  FL +MH   K
Sbjct:    63 YDKQQRGKIKATDLMVAMRCLG-ASPTPGEVQRHLQTHGIDGNGELDFSTFLTIMHMQIK 121

Query:   366 AEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVR 425
              ED  KE++ A    D  K G V A  L+  L + GE L+ KEVD +FREA++  N KV+
Sbjct:   122 QEDPKKEILLAMLMVDKEKKGYVMASDLRSKLTSLGEKLTHKEVDDLFREADIEPNGKVK 181

Query:   426 YEDFVKIACAPVPDY 440
             Y++F+     P  DY
Sbjct:   182 YDEFIHKITLPGRDY 196

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|P13868 PCM1 "Calmodulin-1" [Solanum tuberosum (taxid:4113)]

 Score = 196 (74.1 bits), Expect = 6.6e-15, P = 6.6e-15
 Identities = 38/101 (37%), Positives = 63/101 (62%)

Query:   335 EVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLK 394
             E+ D    AD  ++G + FP+FL +M    K  D  +E+ +AFK  D  ++G + A  L+
Sbjct:    48 ELQDMISEADADQNGTIDFPEFLNLMARKMKDTDSEEELKEAFKVFDKDQNGFISAAELR 107

Query:   395 HVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
             HV+ N GE L+ +EVD++ REA++  + +V YE+FV++  A
Sbjct:   108 HVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVRMMLA 148

GO:0005515 "protein binding" evidence=IPI

ZFIN|ZDB-GENE-081022-9 calml4a "calmodulin-like 4a" [Danio rerio (taxid:7955)]

 Score = 194 (73.4 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 44/135 (32%), Positives = 69/135 (51%)

Query:   306 YLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSK 365
             Y  ++ GK+   D + VM     +     EV    +     K+G+L F  FL +MH   +
Sbjct:    20 YDKKRKGKIEAKDLITVMRCLGTSPTY-NEVDRHLQVHKIDKTGELDFSTFLTMMHRQMQ 78

Query:   366 AEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVR 425
              ED   E+++A +  D  K G + A  L+  L   GE L+ KEVD++F+EA+V  +  V 
Sbjct:    79 QEDPKTEILEAMRMTDKHKKGYIQASELRAKLTGLGEKLTDKEVDELFKEAHVGRDGLVH 138

Query:   426 YEDFVKIACAPVPDY 440
             YE+F ++   P  DY
Sbjct:   139 YEEFTRMVTLPTVDY 153

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	441
PTZ00184	149	PTZ00184, PTZ00184, calmodulin; Provisional	1e-29
COG5126	160	COG5126, FRQ1, Ca2+-binding protein (EF-Hand super	3e-16
PTZ00183	158	PTZ00183, PTZ00183, centrin; Provisional	2e-12
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-07
cd00051	63	cd00051, EFh, EF-hand, calcium binding motif; A di	8e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	9e-07
cd00051	63	cd00051, EFh, EF-hand, calcium binding motif; A di	2e-04
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	3e-04
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	4e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-04
PTZ00183	158	PTZ00183, PTZ00183, centrin; Provisional	0.001
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.003
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.004
pfam13499	60	pfam13499, EF_hand_5, EF-hand domain pair	0.004

>gnl|CDD|185504 PTZ00184, PTZ00184, calmodulin; Provisional

 Score =  112 bits (282), Expect = 1e-29
 Identities = 60/171 (35%), Positives = 89/171 (52%), Gaps = 36/171 (21%)

Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++  GTI T  EL  +MRSLG +PT AEL+                    
Sbjct: 12  EFKEAFSLFDKDGDGTI-TTKELGTVMRSLGQNPTEAELQ-------------------- 50

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                 D+  EV       D   +G + FP+FL +M    K  D  +E+ +AFK  D   
Sbjct: 51  ------DMINEV-------DADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDG 97

Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           +G + A  L+HV+ N GE L+ +EVD++ REA+V  + ++ YE+FVK+  +
Sbjct: 98  NGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMS 148

Length = 149

>gnl|CDD|227455 COG5126, FRQ1, Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]

 Score = 75.8 bits (187), Expect = 3e-16
 Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 37/168 (22%)

Query: 267 EFRECFFLFARNGT--IKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           E +E F LF R+    I   +EL  I+RSLG +P+ AE+ K          F +      
Sbjct: 21  ELKEAFQLFDRDSDGLI-DRNELGKILRSLGFNPSEAEINK---------LFEEI----- 65

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                                  +  + FP+FL VM    K  D  +E+ +AFK  D   
Sbjct: 66  --------------------DAGNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDH 105

Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
            G +    L+ VL + GE LS +EV+++ +E +   + ++ YE+F K+
Sbjct: 106 DGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKL 153

Length = 160

>gnl|CDD|185503 PTZ00183, PTZ00183, centrin; Provisional

 Score = 64.7 bits (158), Expect = 2e-12
 Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 36/169 (21%)

Query: 266 LEFRECFFLFARNGTIKTLD--ELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVM 323
            E RE F LF  +G+  T+D  EL V MRSLG  P   E+K+ +A               
Sbjct: 17  KEIREAFDLFDTDGS-GTIDPKELKVAMRSLGFEPKKEEIKQMIA--------------- 60

Query: 324 HTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTT 383
                  D+ K+            SGK+ F +FL +M       D  +E++ AF+  D  
Sbjct: 61  -------DVDKDG-----------SGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDD 102

Query: 384 KSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           K+G +  K LK V    GE ++ +E+ ++  EA+   + ++  E+F +I
Sbjct: 103 KTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRI 151

Length = 158

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 47.5 bits (114), Expect = 2e-07
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 83  VEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLL 141
           ++ L L +N LT +P      L NL+VL L+ N L + S P   +   +L  L L  N L
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSIS-PEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|238008 cd00051, EFh, EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands

 Score = 45.6 bits (109), Expect = 8e-07
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 7/64 (10%)

Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFL 320
           E RE F LF ++  GTI + DEL   ++SLG   +  E+ + + E      GK+ F +FL
Sbjct: 1   ELREAFRLFDKDGDGTI-SADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFL 59

Query: 321 KVMH 324
           ++M 
Sbjct: 60  ELMA 63

Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers. Length = 63

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 50.4 bits (120), Expect = 9e-07
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 2/82 (2%)

Query: 82  TVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLL 141
            ++ L L  N + SLP  +  L NL+ L L+ N    + +P  L+   NL +L L  N +
Sbjct: 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN--DLSDLPKLLSNLSNLNNLDLSGNKI 198

Query: 142 DALPGFLLSMPQLDTVYRHGNH 163
             LP  +  +  L+ +    N 
Sbjct: 199 SDLPPEIELLSALEELDLSNNS 220

Length = 394

>gnl|CDD|238008 cd00051, EFh, EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 22/61 (36%), Positives = 39/61 (63%)

Query: 372 EVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVK 431
           E+ +AF+  D    GT+ A  LK  L + GEGLS +E+D++ RE +   + K+ +E+F++
Sbjct: 1   ELREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLE 60

Query: 432 I 432
           +
Sbjct: 61  L 61

Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers. Length = 63

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 37.9 bits (89), Expect = 3e-04
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 84  EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNAS 120
           E L L +N +T LPP +  L NL  L L+ N + + S
Sbjct: 4   ETLDLSNNQITDLPP-LSNLPNLETLDLSGNKITDLS 39

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 37.5 bits (88), Expect = 4e-04
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 3/44 (6%)

Query: 104 TNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGF 147
           TNL  L L++N +    +P  L+   NL  L L  N +  L   
Sbjct: 1   TNLETLDLSNNQIT--DLPP-LSNLPNLETLDLSGNKITDLSPL 41

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.9 bits (98), Expect = 5e-04
 Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 2/90 (2%)

Query: 73  IGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLT 132
           +   +     ++ L L  N L+ LP  +  L+NL  L L+ N +    +P  +     L 
Sbjct: 155 LPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKIS--DLPPEIELLSALE 212

Query: 133 HLYLDNNLLDALPGFLLSMPQLDTVYRHGN 162
            L L NN +  L   L ++  L  +    N
Sbjct: 213 ELDLSNNSIIELLSSLSNLKNLSGLELSNN 242

Length = 394

>gnl|CDD|185503 PTZ00183, PTZ00183, centrin; Provisional

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 21/67 (31%), Positives = 36/67 (53%)

Query: 367 EDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRY 426
           ED  KE+ +AF   DT  SGT+  K LK  + + G     +E+ Q+  + +   + K+ +
Sbjct: 13  EDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDF 72

Query: 427 EDFVKIA 433
           E+F+ I 
Sbjct: 73  EEFLDIM 79

Length = 158

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.4 bits (92), Expect = 0.003
 Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 3/74 (4%)

Query: 83  VEVLSLKSNSLT-SLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL-DNNL 140
           ++ L L  N L+  +PP I  L  L  L L+DN L +  IP  +   +NL  L+L  NN 
Sbjct: 262 LQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL-SGEIPELVIQLQNLEILHLFSNNF 320

Query: 141 LDALPGFLLSMPQL 154
              +P  L S+P+L
Sbjct: 321 TGKIPVALTSLPRL 334

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 38.8 bits (90), Expect = 0.004
 Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 5/100 (5%)

Query: 66  LSLSYTPI---GRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIP 122
           L LS+  +    + +     +  L L  N ++ LPP+I  L+ L  L L++N +    + 
Sbjct: 168 LDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII--ELL 225

Query: 123 FTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGN 162
            +L+  KNL+ L L NN L+ LP  + ++  L+T+    N
Sbjct: 226 SSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNN 265

Length = 394

>gnl|CDD|222177 pfam13499, EF_hand_5, EF-hand domain pair

 Score = 35.4 bits (82), Expect = 0.004
 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 312 GKLS---FPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVM 360
           G +        LK +      E++ + +   F   D    G++SF +FL+ M
Sbjct: 9   GYIDVEELRKLLKALGLKLTDEEVEELIEADFNEIDKDGDGRISFEEFLEAM 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	441
COG5126	160	FRQ1 Ca2+-binding protein (EF-Hand superfamily) [S	99.87
KOG0027|consensus	151		99.85
KOG0028|consensus	172		99.83
KOG0031|consensus	171		99.75
KOG0617|consensus	264		99.74
PTZ00183	158	centrin; Provisional	99.73
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.73
PTZ00184	149	calmodulin; Provisional	99.72
KOG0617|consensus	264		99.68
KOG0030|consensus	152		99.64
KOG0044|consensus	193		99.64
KOG0444|consensus	1255		99.62
KOG0037|consensus	221		99.62
PTZ00183	158	centrin; Provisional	99.62
KOG4194|consensus	873		99.6
KOG0037|consensus	221		99.58
PTZ00184	149	calmodulin; Provisional	99.57
KOG0444|consensus	1255		99.57
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.56
KOG0034|consensus	187		99.56
KOG0034|consensus	187		99.52
PLN03150	623	hypothetical protein; Provisional	99.51
COG5126	160	FRQ1 Ca2+-binding protein (EF-Hand superfamily) [S	99.48
KOG4237|consensus	498		99.47
KOG0472|consensus	565		99.46
KOG0044|consensus	193		99.46
KOG0036|consensus	463		99.45
KOG0027|consensus	151		99.42
KOG4194|consensus	873		99.38
KOG0472|consensus	565		99.37
KOG0028|consensus	172		99.34
KOG4223|consensus	325		99.31
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.28
cd05022	89	S-100A13 S-100A13: S-100A13 domain found in protei	99.28
PF13499	66	EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A	99.25
KOG0532|consensus	722		99.22
KOG0532|consensus	722		99.21
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.2
KOG0618|consensus	1081		99.18
KOG4223|consensus	325		99.14
PLN02964	644	phosphatidylserine decarboxylase	99.14
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.14
cd05027	88	S-100B S-100B: S-100B domain found in proteins sim	99.13
KOG0036|consensus	463		99.12
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.1
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.1
KOG0618|consensus	1081		99.09
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.08
KOG0038|consensus	189		99.07
KOG1259|consensus	490		99.06
KOG4237|consensus	498		99.06
PF13499	66	EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A	99.05
cd05029	88	S-100A6 S-100A6: S-100A6 domain found in proteins	99.05
KOG1259|consensus	490		99.02
cd05026	93	S-100Z S-100Z: S-100Z domain found in proteins sim	98.99
KOG0038|consensus	189		98.99
PLN02964	644	phosphatidylserine decarboxylase	98.99
cd05031	94	S-100A10_like S-100A10_like: S-100A10 domain found	98.96
cd05025	92	S-100A1 S-100A1: S-100A1 domain found in proteins	98.95
PF13833	54	EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A	98.95
PLN03150	623	hypothetical protein; Provisional	98.95
cd05022	89	S-100A13 S-100A13: S-100A13 domain found in protei	98.94
cd05023	89	S-100A11 S-100A11: S-100A11 domain found in protei	98.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.91
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.9
cd00052	67	EH Eps15 homology domain; found in proteins implic	98.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.89
smart00027	96	EH Eps15 homology domain. Pair of EF hand motifs t	98.86
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.86
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.85
cd00051	63	EFh EF-hand, calcium binding motif; A diverse supe	98.82
cd00213	88	S-100 S-100: S-100 domain, which represents the la	98.81
KOG2643|consensus	489		98.8
cd05026	93	S-100Z S-100Z: S-100Z domain found in proteins sim	98.8
cd05027	88	S-100B S-100B: S-100B domain found in proteins sim	98.79
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.76
KOG4251|consensus	362		98.74
cd05029	88	S-100A6 S-100A6: S-100A6 domain found in proteins	98.71
PF14658	66	EF-hand_9: EF-hand domain	98.68
KOG0377|consensus	631		98.67
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.66
cd00252	116	SPARC_EC SPARC_EC; extracellular Ca2+ binding doma	98.65
cd05031	94	S-100A10_like S-100A10_like: S-100A10 domain found	98.64
KOG4579|consensus	177		98.64
cd05030	88	calgranulins Calgranulins: S-100 domain found in p	98.63
cd05025	92	S-100A1 S-100A1: S-100A1 domain found in proteins	98.62
cd00052	67	EH Eps15 homology domain; found in proteins implic	98.59
cd05023	89	S-100A11 S-100A11: S-100A11 domain found in protei	98.59
cd00252	116	SPARC_EC SPARC_EC; extracellular Ca2+ binding doma	98.57
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.57
KOG0031|consensus	171		98.57
cd00213	88	S-100 S-100: S-100 domain, which represents the la	98.56
KOG3207|consensus	505		98.55
smart00027	96	EH Eps15 homology domain. Pair of EF hand motifs t	98.55
KOG0030|consensus	152		98.54
PF13833	54	EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A	98.5
cd00051	63	EFh EF-hand, calcium binding motif; A diverse supe	98.45
PF00036	29	EF-hand_1: EF hand; InterPro: IPR018248 Many calci	98.44
KOG2643|consensus	489		98.39
KOG0041|consensus	244		98.38
KOG4666|consensus	412		98.36
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.35
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.34
KOG4579|consensus	177		98.34
cd05030	88	calgranulins Calgranulins: S-100 domain found in p	98.32
PF00036	29	EF-hand_1: EF hand; InterPro: IPR018248 Many calci	98.31
KOG3207|consensus	505		98.31
cd05024	91	S-100A10 S-100A10: A subgroup of the S-100A10 doma	98.3
KOG1859|consensus	1096		98.3
KOG0531|consensus	414		98.29
KOG1859|consensus	1096		98.27
KOG4251|consensus	362		98.25
PF14658	66	EF-hand_9: EF-hand domain	98.2
KOG0531|consensus	414		98.17
KOG0751|consensus	694		98.17
KOG0377|consensus	631		98.13
PRK12309	391	transaldolase/EF-hand domain-containing protein; P	98.11
PF13405	31	EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J	98.07
KOG0041|consensus	244		98.04
KOG4658|consensus	889		97.98
KOG4658|consensus	889		97.95
PRK15386	426	type III secretion protein GogB; Provisional	97.94
PRK12309	391	transaldolase/EF-hand domain-containing protein; P	97.92
cd05024	91	S-100A10 S-100A10: A subgroup of the S-100A10 doma	97.89
PF13202	25	EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ	97.86
KOG1644|consensus	233		97.82
PF12763	104	EF-hand_4: Cytoskeletal-regulatory complex EF hand	97.77
PF14788	51	EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QA	97.75
KOG1644|consensus	233		97.74
PF13202	25	EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ	97.69
KOG0040|consensus	2399		97.55
PF13405	31	EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J	97.55
KOG0040|consensus	2399		97.52
PRK15386	426	type III secretion protein GogB; Provisional	97.47
KOG2562|consensus	493		97.45
KOG1909|consensus	382		97.43
KOG2982|consensus	418		97.4
PF14788	51	EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QA	97.35
PF12763	104	EF-hand_4: Cytoskeletal-regulatory complex EF hand	97.33
KOG1909|consensus	382		97.29
KOG2562|consensus	493		97.29
KOG2982|consensus	418		97.26
KOG2739|consensus	260		97.17
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	97.15
KOG2739|consensus	260		97.14
PF09279	83	EF-hand_like: Phosphoinositide-specific phospholip	97.04
KOG0751|consensus	694		97.01
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.0
KOG3665|consensus	699		96.99
PF10591	113	SPARC_Ca_bdg: Secreted protein acidic and rich in	96.99
KOG3665|consensus	699		96.93
PF10591	113	SPARC_Ca_bdg: Secreted protein acidic and rich in	96.92
KOG4666|consensus	412		96.79
KOG0473|consensus	326		96.76
KOG2123|consensus	388		96.63
KOG0046|consensus	627		96.58
smart00054	29	EFh EF-hand, calcium binding motif. EF-hands are c	96.53
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.46
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.26
KOG4065|consensus	144		96.17
smart00054	29	EFh EF-hand, calcium binding motif. EF-hands are c	96.0
PF09279	83	EF-hand_like: Phosphoinositide-specific phospholip	95.99
KOG2123|consensus	388		95.89
KOG0169|consensus	746		95.87
KOG1029|consensus	1118		95.75
KOG2120|consensus	419		95.66
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.52
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.4
KOG0473|consensus	326		95.37
KOG2120|consensus	419		95.25
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.22
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.13
PF05042	174	Caleosin: Caleosin related protein; InterPro: IPR0	94.91
KOG0046|consensus	627		94.88
KOG0169|consensus	746		94.69
KOG3555|consensus	434		94.68
PLN02952	599	phosphoinositide phospholipase C	94.51
KOG4065|consensus	144		94.17
KOG3555|consensus	434		93.79
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	93.75
PLN02952	599	phosphoinositide phospholipase C	93.69
smart00370	26	LRR Leucine-rich repeats, outliers.	93.27
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.27
KOG4578|consensus	421		92.99
KOG2243|consensus	5019		92.74
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.52
smart00370	26	LRR Leucine-rich repeats, outliers.	92.52
KOG4347|consensus	671		91.69
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	90.77
PF05517	154	p25-alpha: p25-alpha ; InterPro: IPR008907 This fa	90.58
KOG3866|consensus	442		90.49
KOG0035|consensus	890		89.96
PF08726	69	EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPr	89.34
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	89.11
PF05042	174	Caleosin: Caleosin related protein; InterPro: IPR0	88.92
KOG0042|consensus	680		88.49
KOG1707|consensus	625		87.21
KOG3866|consensus	442		87.16
KOG1265|consensus	1189		86.25
KOG4578|consensus	421		85.78
KOG4347|consensus	671		84.29
KOG1955|consensus	737		84.0
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	83.52
KOG1955|consensus	737		82.91
PF09069	90	EF-hand_3: EF-hand; InterPro: IPR015154 Like other	82.88

>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]

Probab=99.87  E-value=6.7e-21  Score=154.83  Aligned_cols=145  Identities=33%  Similarity=0.539  Sum_probs=126.1

Q ss_pred             cceecccchHHHHHhhhcccc--CCCccCHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCHH
Q psy2947         257 KVFTFKTPYLEFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPK  334 (441)
Q Consensus       257 ~~~l~~~~~~~l~~~f~~~d~--~G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~  334 (441)
                      ...++.+++++++++|..+|.  +|.| +..++..+++.++..++..++.+++                           
T Consensus        11 ~~~~t~~qi~~lkeaF~l~D~d~~G~I-~~~el~~ilr~lg~~~s~~ei~~l~---------------------------   62 (160)
T COG5126          11 FTQLTEEQIQELKEAFQLFDRDSDGLI-DRNELGKILRSLGFNPSEAEINKLF---------------------------   62 (160)
T ss_pred             cccCCHHHHHHHHHHHHHhCcCCCCCC-cHHHHHHHHHHcCCCCcHHHHHHHH---------------------------
Confidence            456788999999999999998  4899 7899999999888666555555544                           


Q ss_pred             HHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy2947         335 EVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFR  414 (441)
Q Consensus       335 ~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~  414 (441)
                            ..+|. +.+.|++.+|..+|.........+++++.+|+.||.|+||+|+..|++++++.+|..+++++++.+++
T Consensus        63 ------~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~  135 (160)
T COG5126          63 ------EEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLK  135 (160)
T ss_pred             ------HhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHH
Confidence                  45777 78888888888888887767777899999999999999999999999999999999999999999999


Q ss_pred             HhCCCCCCceeHHHHHHHHhcc
Q psy2947         415 EANVTMNSKVRYEDFVKIACAP  436 (441)
Q Consensus       415 ~~d~d~dg~i~~~ef~~~l~~~  436 (441)
                      .+|.|++|.|+|++|++.+...
T Consensus       136 ~~d~d~dG~i~~~eF~~~~~~~  157 (160)
T COG5126         136 EYDEDGDGEIDYEEFKKLIKDS  157 (160)
T ss_pred             hcCCCCCceEeHHHHHHHHhcc
Confidence            9999999999999999987653

>KOG0027|consensus

Probab=99.85  E-value=4.6e-20  Score=154.06  Aligned_cols=142  Identities=34%  Similarity=0.598  Sum_probs=119.5

Q ss_pred             cccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCHHHHHH
Q psy2947         261 FKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVD  338 (441)
Q Consensus       261 ~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~  338 (441)
                      +..+...++++|..+|.+  |+| +..+++.+++.++..++..                                 ++..
T Consensus         3 ~~~~~~el~~~F~~fD~d~~G~i-~~~el~~~lr~lg~~~t~~---------------------------------el~~   48 (151)
T KOG0027|consen    3 SEEQILELKEAFQLFDKDGDGKI-SVEELGAVLRSLGQNPTEE---------------------------------ELRD   48 (151)
T ss_pred             CHHHHHHHHHHHHHHCCCCCCcc-cHHHHHHHHHHcCCCCCHH---------------------------------HHHH
Confidence            356678888889888876  778 7888988888888655444                                 4455


Q ss_pred             HHHhhcCCCCCcccHHHHHHHHHhhccCCCC----hHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy2947         339 AFKAADTTKSGKLSFPDFLKVMHTHSKAEDI----PKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFR  414 (441)
Q Consensus       339 ~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~----~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~  414 (441)
                      ++..+|.|++|.|+++||..++.........    .++++++|+.||+|++|+||.+||+++|..+|.+.+.++++.+++
T Consensus        49 ~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~  128 (151)
T KOG0027|consen   49 LIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIR  128 (151)
T ss_pred             HHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHH
Confidence            5556888999999999999988866543332    358999999999999999999999999999999999999999999


Q ss_pred             HhCCCCCCceeHHHHHHHHhcc
Q psy2947         415 EANVTMNSKVRYEDFVKIACAP  436 (441)
Q Consensus       415 ~~d~d~dg~i~~~ef~~~l~~~  436 (441)
                      .+|.|+||.|+|++|+.+|...
T Consensus       129 ~~d~d~dg~i~f~ef~~~m~~~  150 (151)
T KOG0027|consen  129 EVDVDGDGKVNFEEFVKMMSGK  150 (151)
T ss_pred             hcCCCCCCeEeHHHHHHHHhcC
Confidence            9999999999999999998753

>KOG0028|consensus

Probab=99.83  E-value=3e-19  Score=141.08  Aligned_cols=147  Identities=33%  Similarity=0.523  Sum_probs=130.9

Q ss_pred             ccceecccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCH
Q psy2947         256 YKVFTFKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIP  333 (441)
Q Consensus       256 ~~~~l~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~  333 (441)
                      ....+++++.+.+++.|..+|.+  |+| +.+++..+++.+|..+...++.+++.+                        
T Consensus        23 ~~~~l~~~q~q~i~e~f~lfd~~~~g~i-D~~EL~vAmralGFE~~k~ei~kll~d------------------------   77 (172)
T KOG0028|consen   23 PKSELTEEQKQEIKEAFELFDPDMAGKI-DVEELKVAMRALGFEPKKEEILKLLAD------------------------   77 (172)
T ss_pred             CCccccHHHHhhHHHHHHhhccCCCCcc-cHHHHHHHHHHcCCCcchHHHHHHHHh------------------------
Confidence            34456678889999999999986  889 899999999999988777777666654                        


Q ss_pred             HHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHH
Q psy2947         334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIF  413 (441)
Q Consensus       334 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~  413 (441)
                               +|.++.|.|++++|+..+........+.+++..+|+.+|.|++|.|+..+|+.+++.+|+.++++++.+|+
T Consensus        78 ---------~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMI  148 (172)
T KOG0028|consen   78 ---------VDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMI  148 (172)
T ss_pred             ---------hhhccCceechHHHHHHHHHHHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHH
Confidence                     78889999999999998887766666889999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCCCceeHHHHHHHHhcc
Q psy2947         414 REANVTMNSKVRYEDFVKIACAP  436 (441)
Q Consensus       414 ~~~d~d~dg~i~~~ef~~~l~~~  436 (441)
                      .++|.|+||.|+-+||.+.|.+.
T Consensus       149 eEAd~d~dgevneeEF~~imk~t  171 (172)
T KOG0028|consen  149 EEADRDGDGEVNEEEFIRIMKKT  171 (172)
T ss_pred             HHhcccccccccHHHHHHHHhcC
Confidence            99999999999999999998764

>KOG0031|consensus

Probab=99.75  E-value=5.1e-17  Score=127.46  Aligned_cols=148  Identities=27%  Similarity=0.456  Sum_probs=130.1

Q ss_pred             CcCcccceecccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCC
Q psy2947         252 DRSGYKVFTFKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKA  329 (441)
Q Consensus       252 ~~~~~~~~l~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~  329 (441)
                      ..+.+...+++.+++++++.|..+|++  |.| +.++++.++..+|..++..++..+++...|.|+|--|+.++..... 
T Consensus        18 asSnvFamf~q~QIqEfKEAF~~mDqnrDG~I-dkeDL~d~~aSlGk~~~d~elDaM~~Ea~gPINft~FLTmfGekL~-   95 (171)
T KOG0031|consen   18 ASSNVFAMFDQSQIQEFKEAFNLMDQNRDGFI-DKEDLRDMLASLGKIASDEELDAMMKEAPGPINFTVFLTMFGEKLN-   95 (171)
T ss_pred             ccchHHHHhhHHHHHHHHHHHHHHhccCCCcc-cHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCeeHHHHHHHHHHHhc-
Confidence            334456678899999999999999975  899 8999999999999999999999999998889888888888875432 


Q ss_pred             CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHH
Q psy2947         330 EDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEV  409 (441)
Q Consensus       330 ~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~  409 (441)
                                                          +...++.|..+|+.||.+++|.|..+.++.+|...|.+++++++
T Consensus        96 ------------------------------------gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV  139 (171)
T KOG0031|consen   96 ------------------------------------GTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEV  139 (171)
T ss_pred             ------------------------------------CCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHH
Confidence                                                33446788899999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCceeHHHHHHHHhccC
Q psy2947         410 DQIFREANVTMNSKVRYEDFVKIACAPV  437 (441)
Q Consensus       410 ~~l~~~~d~d~dg~i~~~ef~~~l~~~~  437 (441)
                      +.+++.+..|..|.++|.+|+.++.++-
T Consensus       140 ~~m~r~~p~d~~G~~dy~~~~~~ithG~  167 (171)
T KOG0031|consen  140 DEMYREAPIDKKGNFDYKAFTYIITHGE  167 (171)
T ss_pred             HHHHHhCCcccCCceeHHHHHHHHHccc
Confidence            9999999999999999999999998653

>KOG0617|consensus

Probab=99.74  E-value=4e-20  Score=149.27  Aligned_cols=157  Identities=26%  Similarity=0.345  Sum_probs=109.8

Q ss_pred             CCcccEEeccCC---CcCcccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEc
Q psy2947          60 FSHAFLLSLSYT---PIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL  136 (441)
Q Consensus        60 l~~L~~l~l~~n---~i~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l  136 (441)
                      +++++.|-||+|   .+|+.+..+.+|+.|++++|+|..+|.+++.+++|+.|+++-|++.  .+|.+|+.++.|+.|||
T Consensus        32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~--~lprgfgs~p~levldl  109 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN--ILPRGFGSFPALEVLDL  109 (264)
T ss_pred             hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh--cCccccCCCchhhhhhc
Confidence            556666777777   4566677777777777777777777777777777777777777776  67777777777777777


Q ss_pred             cCCCCC--ccchhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCchhhhhhhhcccc
Q psy2947         137 DNNLLD--ALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSRLQDLAVQSVIA  213 (441)
Q Consensus       137 ~~n~l~--~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~l~~l~~l~~l~  213 (441)
                      ++|++.  .+|+.|..+..|+.|+|++|.+          .-+|..++.+..+..+ ++.|.+..+|..++.|..|+.|.
T Consensus       110 tynnl~e~~lpgnff~m~tlralyl~dndf----------e~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelh  179 (264)
T KOG0617|consen  110 TYNNLNENSLPGNFFYMTTLRALYLGDNDF----------EILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELH  179 (264)
T ss_pred             cccccccccCCcchhHHHHHHHHHhcCCCc----------ccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHh
Confidence            777773  5676666677777777777775          3346666666666666 67777777777777777777777


Q ss_pred             cccccCCCCCCCchhhh
Q psy2947         214 SKENFFEPGLFPGPLVD  230 (441)
Q Consensus       214 l~~n~~~~~~~p~~~~~  230 (441)
                      +.+|.+..  +|..+..
T Consensus       180 iqgnrl~v--lppel~~  194 (264)
T KOG0617|consen  180 IQGNRLTV--LPPELAN  194 (264)
T ss_pred             cccceeee--cChhhhh
Confidence            77776654  5555443

>PTZ00183 centrin; Provisional

Probab=99.73  E-value=2.1e-16  Score=133.79  Aligned_cols=126  Identities=25%  Similarity=0.425  Sum_probs=102.1

Q ss_pred             hCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcc
Q psy2947         309 EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTV  388 (441)
Q Consensus       309 ~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i  388 (441)
                      +++|.|+.+||..++.... .......+..+|+.+|.+++|.|+++||..++..........+.++.+|+.+|.+++|.|
T Consensus        29 ~~~G~i~~~e~~~~l~~~g-~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i  107 (158)
T PTZ00183         29 DGSGTIDPKELKVAMRSLG-FEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKI  107 (158)
T ss_pred             CCCCcccHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcC
Confidence            3444444444444444331 123455678888999999999999999999887654444556789999999999999999


Q ss_pred             cHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         389 PAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       389 s~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      +.+||+.++...|..+++++++.+|..+|.+++|.|+|++|++++.+
T Consensus       108 ~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~  154 (158)
T PTZ00183        108 SLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKK  154 (158)
T ss_pred             cHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999865

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.73  E-value=3.6e-18  Score=185.47  Aligned_cols=196  Identities=27%  Similarity=0.283  Sum_probs=102.4

Q ss_pred             CCccCeeEEeeccccCCCCCcCCCCCCCCCCCcCCCCCccCCCCccCCCC---------------C---CCCCCcccEEe
Q psy2947           6 KNNEGFQATRNKQGVGFSRRSSFKNKNSTPQTACQRNCSLEVGGICSHIW---------------I---PQYFSHAFLLS   67 (441)
Q Consensus         6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~c~~~~~~~c~~~~---------------~---~~~l~~L~~l~   67 (441)
                      ++.|..||++||+++. +|.+...+|+..  ..|   |.| .|+.|...+               +   ...+++|+.|+
T Consensus        27 ~~~~~~~l~~~~~~~~-~~~~~~~~w~~~--~~~---c~w-~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~   99 (968)
T PLN00113         27 HAEELELLLSFKSSIN-DPLKYLSNWNSS--ADV---CLW-QGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTIN   99 (968)
T ss_pred             CHHHHHHHHHHHHhCC-CCcccCCCCCCC--CCC---CcC-cceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEE
Confidence            5678899999999985 555666788643  234   554 577776311               0   12467778888


Q ss_pred             ccCCC----cCcccC-CCCCCCEEEccCCCCC-c----------------------CCcCccCCCCCcEEEccCCcCCCC
Q psy2947          68 LSYTP----IGRRIF-KCDTVEVLSLKSNSLT-S----------------------LPPDIGRLTNLRVLCLTDNCLQNA  119 (441)
Q Consensus        68 l~~n~----i~~~~~-~l~~L~~L~l~~n~l~-~----------------------lp~~~~~l~~L~~L~l~~n~l~~~  119 (441)
                      |++|.    +|..+. .+++|++|+|++|.++ .                      +|..++.+++|++|++++|.+. +
T Consensus       100 Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~-~  178 (968)
T PLN00113        100 LSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV-G  178 (968)
T ss_pred             CCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccc-c
Confidence            88773    444443 5666666666666554 3                      3333444444444444444444 3


Q ss_pred             CCchhhhcCCCCCEEEccCCCCC-ccchhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-Hhhccc-
Q psy2947         120 SIPFTLTFCKNLTHLYLDNNLLD-ALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKK-  196 (441)
Q Consensus       120 ~~p~~~~~l~~L~~L~l~~n~l~-~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~-  196 (441)
                      .+|..++++++|++|+|++|.+. .+|..++++++|+.|++++|.+         .+.+|..+..++.+..+ +.+|.+ 
T Consensus       179 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l---------~~~~p~~l~~l~~L~~L~L~~n~l~  249 (968)
T PLN00113        179 KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL---------SGEIPYEIGGLTSLNHLDLVYNNLT  249 (968)
T ss_pred             cCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc---------CCcCChhHhcCCCCCEEECcCceec
Confidence            44444444444444444444442 3344444444444444444442         22334444444444444 444433 


Q ss_pred             ccCCchhhhhhhhccccccccc
Q psy2947         197 LHQPSRLQDLAVQSVIASKENF  218 (441)
Q Consensus       197 ~~~p~~l~~l~~l~~l~l~~n~  218 (441)
                      ..+|..+..+++|+.|+++.|.
T Consensus       250 ~~~p~~l~~l~~L~~L~L~~n~  271 (968)
T PLN00113        250 GPIPSSLGNLKNLQYLFLYQNK  271 (968)
T ss_pred             cccChhHhCCCCCCEEECcCCe
Confidence            2344444444444444444443

>PTZ00184 calmodulin; Provisional

Probab=99.72  E-value=2.6e-16  Score=131.76  Aligned_cols=127  Identities=31%  Similarity=0.571  Sum_probs=107.5

Q ss_pred             HhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCc
Q psy2947         308 AEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGT  387 (441)
Q Consensus       308 ~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~  387 (441)
                      .+++|.|+++||..++..... ....+.+..+|+.+|.+++|.|+++||..++..........+.+..+|+.+|.+++|.
T Consensus        22 ~~~~G~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~  100 (149)
T PTZ00184         22 KDGDGTITTKELGTVMRSLGQ-NPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGF  100 (149)
T ss_pred             CCCCCcCCHHHHHHHHHHhCC-CCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCe
Confidence            456777777777777654422 3446788999999999999999999999988865433344567899999999999999


Q ss_pred             ccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         388 VPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       388 is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      |+.+||+.++..+|..++.++++.++..+|.+++|.|+|+||+.++..
T Consensus       101 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~  148 (149)
T PTZ00184        101 ISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMS  148 (149)
T ss_pred             EeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHhc
Confidence            999999999999998899999999999999999999999999998753

>KOG0617|consensus

Probab=99.68  E-value=5.1e-18  Score=137.16  Aligned_cols=159  Identities=21%  Similarity=0.276  Sum_probs=141.3

Q ss_pred             ccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEccCCCCCccchhhcCCCCCC
Q psy2947          76 RIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLD  155 (441)
Q Consensus        76 ~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~  155 (441)
                      .++.+.+++.|.||+|+++.+|+.+..+.+|+.|++++|+|+  .+|.++.++++|++|+++-|++..+|.+|+.++.|+
T Consensus        28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie--~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~le  105 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE--ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALE  105 (264)
T ss_pred             cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh--hcChhhhhchhhhheecchhhhhcCccccCCCchhh
Confidence            467788999999999999999999999999999999999998  999999999999999999999999999999999999


Q ss_pred             EEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCchhhhhhhhcccccccccCCCCCCCchhhhHHHh
Q psy2947         156 TVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSRLQDLAVQSVIASKENFFEPGLFPGPLVDYIAR  234 (441)
Q Consensus       156 ~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~l~~l~~l~~l~l~~n~~~~~~~p~~~~~~l~~  234 (441)
                      .|+|.+|.+.-        ..+|..+..+..+..+ +..|.+..+|+.++.|.+|++|.++.|.+-.  +|..+..+...
T Consensus       106 vldltynnl~e--------~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~--lpkeig~lt~l  175 (264)
T KOG0617|consen  106 VLDLTYNNLNE--------NSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLS--LPKEIGDLTRL  175 (264)
T ss_pred             hhhcccccccc--------ccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhh--CcHHHHHHHHH
Confidence            99999999633        3578888889999888 8999999999999999999999999997765  89988886666


Q ss_pred             hhcCCccccccc
Q psy2947         235 EYNQYHVCHYCN  246 (441)
Q Consensus       235 ~~~~~~~~~~~~  246 (441)
                      ...+..+..+..
T Consensus       176 relhiqgnrl~v  187 (264)
T KOG0617|consen  176 RELHIQGNRLTV  187 (264)
T ss_pred             HHHhcccceeee
Confidence            666666554333

>KOG0030|consensus

Probab=99.64  E-value=7.1e-15  Score=113.49  Aligned_cols=139  Identities=31%  Similarity=0.517  Sum_probs=114.4

Q ss_pred             ecccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHHhC--C----CcccHHHHHHHHHhhcCCCC
Q psy2947         260 TFKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEK--G----GKLSFPDFLKVMHTHSKAED  331 (441)
Q Consensus       260 l~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~~--~----g~i~~~ef~~~~~~~~~~~~  331 (441)
                      +++++..+++++|..||..  |.| +..++...++.+|..|+.+++.+...+.  +    .+|+|++|+.++......  
T Consensus         5 ~~~d~~~e~ke~F~lfD~~gD~ki-~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vakn--   81 (152)
T KOG0030|consen    5 FTPDQMEEFKEAFLLFDRTGDGKI-SGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKN--   81 (152)
T ss_pred             cCcchHHHHHHHHHHHhccCcccc-cHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhc--
Confidence            4567789999999999985  778 8999999999999999999999888642  2    467777777777644211  


Q ss_pred             CHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHH
Q psy2947         332 IPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQ  411 (441)
Q Consensus       332 ~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~  411 (441)
                                                       +...+.+++-+.++.||++++|.|...|+++++..+|+.+++++++.
T Consensus        82 ---------------------------------k~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~  128 (152)
T KOG0030|consen   82 ---------------------------------KDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEE  128 (152)
T ss_pred             ---------------------------------cccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHH
Confidence                                             12233455556788999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         412 IFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       412 l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      ++.-. .|++|.|+|+.|++.+..
T Consensus       129 Llag~-eD~nG~i~YE~fVk~i~~  151 (152)
T KOG0030|consen  129 LLAGQ-EDSNGCINYEAFVKHIMS  151 (152)
T ss_pred             HHccc-cccCCcCcHHHHHHHHhc
Confidence            99987 588999999999987643

>KOG0044|consensus

Probab=99.64  E-value=6.4e-15  Score=124.52  Aligned_cols=124  Identities=19%  Similarity=0.349  Sum_probs=106.9

Q ss_pred             CCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCccc
Q psy2947         310 KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVP  389 (441)
Q Consensus       310 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is  389 (441)
                      +.|.++.++|.++++.......+..-...+|+.||.|++|.|++.||..++.....+.. ++.++-+|+.||.|++|+|+
T Consensus        40 P~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~-eekl~w~F~lyD~dgdG~It  118 (193)
T KOG0044|consen   40 PSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTL-EEKLKWAFRLYDLDGDGYIT  118 (193)
T ss_pred             CCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcH-HHHhhhhheeecCCCCceEc
Confidence            68999999999999998886667778899999999999999999999999988855544 67788889999999999999


Q ss_pred             HHHHHHHHHHh----CC-------CCCHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         390 AKYLKHVLVNW----GE-------GLSSKEVDQIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       390 ~~ef~~~l~~~----~~-------~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      ++|+..+++.+    +.       .-..+.++.+|+.+|.|+||.||++||.+...
T Consensus       119 ~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~  174 (193)
T KOG0044|consen  119 KEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCK  174 (193)
T ss_pred             HHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhh
Confidence            99999888763    31       12456688999999999999999999998764

>KOG0444|consensus

Probab=99.62  E-value=1e-16  Score=153.41  Aligned_cols=161  Identities=21%  Similarity=0.228  Sum_probs=124.2

Q ss_pred             CCCcccEEeccCC-----CcCcccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhh-hcCCCCC
Q psy2947          59 YFSHAFLLSLSYT-----PIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTL-TFCKNLT  132 (441)
Q Consensus        59 ~l~~L~~l~l~~n-----~i~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~-~~l~~L~  132 (441)
                      .++.|+.+.+..|     .||..|+.+..|+.|+||+|+++++|..+..-.++-.|+||+|+|.  +||..+ .+|..|-
T Consensus        76 ~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie--tIPn~lfinLtDLL  153 (1255)
T KOG0444|consen   76 DLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE--TIPNSLFINLTDLL  153 (1255)
T ss_pred             cchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccc--cCCchHHHhhHhHh
Confidence            4566666666665     5788888888888899999998888888888888888899999887  888765 7888888


Q ss_pred             EEEccCCCCCccchhhcCCCCCCEEEccCCcCcc-----Ccccc-----------cccccccccccccchhHHH-Hhhcc
Q psy2947         133 HLYLDNNLLDALPGFLLSMPQLDTVYRHGNHNYF-----KSTFM-----------WYHSDIHARIRSTSTRDEV-LRKQK  195 (441)
Q Consensus       133 ~L~l~~n~l~~lp~~~~~l~~L~~L~l~~N~~~~-----~~~~~-----------~~~~~~p~~l~~l~~~~~~-l~~~~  195 (441)
                      .||||+|++..+|+.+..+..|++|.|++|++..     .+.+.           .....+|.++..+.++..+ ++.|.
T Consensus       154 fLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~  233 (1255)
T KOG0444|consen  154 FLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN  233 (1255)
T ss_pred             hhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC
Confidence            8899999998888888888888888898888521     11111           1224567777777777777 78888


Q ss_pred             cccCCchhhhhhhhcccccccccCCC
Q psy2947         196 KLHQPSRLQDLAVQSVIASKENFFEP  221 (441)
Q Consensus       196 ~~~~p~~l~~l~~l~~l~l~~n~~~~  221 (441)
                      +..+|+.+..+++|..|++++|.+..
T Consensus       234 Lp~vPecly~l~~LrrLNLS~N~ite  259 (1255)
T KOG0444|consen  234 LPIVPECLYKLRNLRRLNLSGNKITE  259 (1255)
T ss_pred             CCcchHHHhhhhhhheeccCcCceee
Confidence            88888888888888888887776554

>KOG0037|consensus

Probab=99.62  E-value=1.2e-14  Score=121.91  Aligned_cols=154  Identities=16%  Similarity=0.295  Sum_probs=94.5

Q ss_pred             chHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcC-HHHHHHHH----HhCCCcccHHHHHHHHHhhcCCCCCHHHH
Q psy2947         264 PYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPT-IAELKKYL----AEKGGKLSFPDFLKVMHTHSKAEDIPKEV  336 (441)
Q Consensus       264 ~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~-~~~~~~~~----~~~~g~i~~~ef~~~~~~~~~~~~~~~~~  336 (441)
                      ....+...|...|++  |+| +.+|++.++...+.... ...+..|+    .+.+|+|.+.||.+++...       ..|
T Consensus        55 ~~~~~~~~f~~vD~d~sg~i-~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i-------~~W  126 (221)
T KOG0037|consen   55 TFPQLAGWFQSVDRDRSGRI-LAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI-------NQW  126 (221)
T ss_pred             ccHHHHHHHHhhCccccccc-cHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH-------HHH
Confidence            456778889888887  888 78888888876554332 22222222    2456666666666666544       456


Q ss_pred             HHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q psy2947         337 VDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREA  416 (441)
Q Consensus       337 ~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~  416 (441)
                      +.+|+.||+|++|.|+..|++.++..+ +-...++....+++.||..++|.|.+++|.+.+..+      ..+-++|++.
T Consensus       127 r~vF~~~D~D~SG~I~~sEL~~Al~~~-Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L------~~lt~~Fr~~  199 (221)
T KOG0037|consen  127 RNVFRTYDRDRSGTIDSSELRQALTQL-GYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVL------QRLTEAFRRR  199 (221)
T ss_pred             HHHHHhcccCCCCcccHHHHHHHHHHc-CcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHH------HHHHHHHHHh
Confidence            666666666666666666666666655 333445555666666666666666666666666543      2344566666


Q ss_pred             CCCCCC--ceeHHHHHHH
Q psy2947         417 NVTMNS--KVRYEDFVKI  432 (441)
Q Consensus       417 d~d~dg--~i~~~ef~~~  432 (441)
                      |++.+|  +|+|++|+.+
T Consensus       200 D~~q~G~i~~~y~dfl~~  217 (221)
T KOG0037|consen  200 DTAQQGSITISYDDFLQM  217 (221)
T ss_pred             ccccceeEEEeHHHHHHH
Confidence            665555  3556666554

>PTZ00183 centrin; Provisional

Probab=99.62  E-value=2.2e-14  Score=121.34  Aligned_cols=140  Identities=29%  Similarity=0.471  Sum_probs=120.4

Q ss_pred             ceecccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHH----hCCCcccHHHHHHHHHhhcCCCC
Q psy2947         258 VFTFKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLA----EKGGKLSFPDFLKVMHTHSKAED  331 (441)
Q Consensus       258 ~~l~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~~~~~  331 (441)
                      ..+++.++.++...|..+|.+  |++ +..++..+++.++.......+..++.    +++|.|+++||..++........
T Consensus         9 ~~~~~~~~~~~~~~F~~~D~~~~G~i-~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~   87 (158)
T PTZ00183          9 PGLTEDQKKEIREAFDLFDTDGSGTI-DPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERD   87 (158)
T ss_pred             CCCCHHHHHHHHHHHHHhCCCCCCcc-cHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCC
Confidence            345678889999999999975  889 89999999999887777777777664    68999999999998876655556


Q ss_pred             CHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         332 IPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       332 ~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      ..+.++.+|+.+|.+++|.|+.+||..++... ......+++..+|..+|.+++|.|+++||..++..
T Consensus        88 ~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~-~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~  154 (158)
T PTZ00183         88 PREEILKAFRLFDDDKTGKISLKNLKRVAKEL-GETITDEELQEMIDEADRNGDGEISEEEFYRIMKK  154 (158)
T ss_pred             cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence            67889999999999999999999999999866 34455788999999999999999999999999864

>KOG4194|consensus

Probab=99.60  E-value=1.2e-15  Score=145.21  Aligned_cols=177  Identities=18%  Similarity=0.189  Sum_probs=141.6

Q ss_pred             CCCcCCCCCccCCC-CccCCCCCCC---------CCCcccEEeccCCCcC----cccCCCCCCCEEEccCCCCCcCCcCc
Q psy2947          35 PQTACQRNCSLEVG-GICSHIWIPQ---------YFSHAFLLSLSYTPIG----RRIFKCDTVEVLSLKSNSLTSLPPDI  100 (441)
Q Consensus        35 ~~~~C~~~c~~~~~-~~c~~~~~~~---------~l~~L~~l~l~~n~i~----~~~~~l~~L~~L~l~~n~l~~lp~~~  100 (441)
                      +...||..|.|... ..|+..+++.         ..+..+.|++++|.+.    ..+.++++|+.+++..|.++.||...
T Consensus        42 ~~~~cpa~c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~  121 (873)
T KOG4194|consen   42 DLSECPATCPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFG  121 (873)
T ss_pred             ccccCCCcCCCCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhccccc
Confidence            34579999999643 5588755433         3456688999999654    45778999999999999999999888


Q ss_pred             cCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEccCCCCCccc-hhhcCCCCCCEEEccCCcCccCcccccccccccc
Q psy2947         101 GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHA  179 (441)
Q Consensus       101 ~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~  179 (441)
                      ....+|+.|+|.+|.|+ ..-.+++.-++.|+.||||.|.|+.|| ..|..-.++++|+|++|.+....         ..
T Consensus       122 ~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~---------~~  191 (873)
T KOG4194|consen  122 HESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLE---------TG  191 (873)
T ss_pred             ccccceeEEeeeccccc-cccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccc---------cc
Confidence            77888999999999998 344457888999999999999999998 66777789999999999986654         23


Q ss_pred             cccccchhHHH-HhhcccccCCchh-hhhhhhcccccccccCCC
Q psy2947         180 RIRSTSTRDEV-LRKQKKLHQPSRL-QDLAVQSVIASKENFFEP  221 (441)
Q Consensus       180 ~l~~l~~~~~~-l~~~~~~~~p~~l-~~l~~l~~l~l~~n~~~~  221 (441)
                      .+.++..+..+ +..|+++.+|... .+|+.|+.|++..|.+..
T Consensus       192 ~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri  235 (873)
T KOG4194|consen  192 HFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI  235 (873)
T ss_pred             cccccchheeeecccCcccccCHHHhhhcchhhhhhccccceee
Confidence            45666666666 8899999998654 559999999999987653

>KOG0037|consensus

Probab=99.58  E-value=1.4e-13  Score=115.60  Aligned_cols=120  Identities=16%  Similarity=0.297  Sum_probs=111.9

Q ss_pred             HhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCc
Q psy2947         308 AEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGT  387 (441)
Q Consensus       308 ~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~  387 (441)
                      ++..|.|+-+|..+++..-....-..+.++.+..+||.+.+|+|+++||+++|..+       ..|+.+|+.+|+|++|.
T Consensus        68 ~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i-------~~Wr~vF~~~D~D~SG~  140 (221)
T KOG0037|consen   68 RDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI-------NQWRNVFRTYDRDRSGT  140 (221)
T ss_pred             ccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH-------HHHHHHHHhcccCCCCc
Confidence            78889999999999998665566778999999999999999999999999999987       68999999999999999


Q ss_pred             ccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         388 VPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       388 is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      |+..||++++..+|..++++-.+.+++++|..++|.|.|++|++++.
T Consensus       141 I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv  187 (221)
T KOG0037|consen  141 IDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCV  187 (221)
T ss_pred             ccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHH
Confidence            99999999999999999999999999999977799999999999774

>PTZ00184 calmodulin; Provisional

Probab=99.57  E-value=1.1e-13  Score=115.71  Aligned_cols=138  Identities=32%  Similarity=0.514  Sum_probs=117.2

Q ss_pred             eecccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHH----hCCCcccHHHHHHHHHhhcCCCCC
Q psy2947         259 FTFKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLA----EKGGKLSFPDFLKVMHTHSKAEDI  332 (441)
Q Consensus       259 ~l~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~~~~~~  332 (441)
                      .++..+...++..|..+|.+  |.| +.+++..++..++..+...++..++.    +++|.|++++|..++.........
T Consensus         4 ~~~~~~~~~~~~~F~~~D~~~~G~i-~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~   82 (149)
T PTZ00184          4 QLTEEQIAEFKEAFSLFDKDGDGTI-TTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDS   82 (149)
T ss_pred             ccCHHHHHHHHHHHHHHcCCCCCcC-CHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcH
Confidence            35667888999999999875  888 89999999998887777777777765    578999999999998866544455


Q ss_pred             HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy2947         333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLV  398 (441)
Q Consensus       333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~  398 (441)
                      .+.+..+|+.+|.+++|.|+.+||..++... ......+.++.+|+.+|.+++|.|+++||..++.
T Consensus        83 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~  147 (149)
T PTZ00184         83 EEEIKEAFKVFDRDGNGFISAAELRHVMTNL-GEKLTDEEVDEMIREADVDGDGQINYEEFVKMMM  147 (149)
T ss_pred             HHHHHHHHHhhCCCCCCeEeHHHHHHHHHHH-CCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence            6789999999999999999999999999876 3344567899999999999999999999998874

>KOG0444|consensus

Probab=99.57  E-value=3.8e-16  Score=149.56  Aligned_cols=136  Identities=22%  Similarity=0.246  Sum_probs=65.3

Q ss_pred             CcccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEccCCCCCccchhhcCCCC
Q psy2947          74 GRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQ  153 (441)
Q Consensus        74 ~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~  153 (441)
                      |.++-.+.+|..+++|.|.+..+|..+..+.+|+.|+||+|+|+  .+.-..+...+|++|+||.|+++.+|.++..++.
T Consensus       215 Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~it--eL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~k  292 (1255)
T KOG0444|consen  215 PTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKIT--ELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTK  292 (1255)
T ss_pred             CCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCcee--eeeccHHHHhhhhhhccccchhccchHHHhhhHH
Confidence            33444444444455555555555544444555555555555554  4444444444445555555555555555555555


Q ss_pred             CCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCchhhhhhhhcccccccccC
Q psy2947         154 LDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSRLQDLAVQSVIASKENFF  219 (441)
Q Consensus       154 L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~l~~l~~l~~l~l~~n~~  219 (441)
                      |+.|++.+|++..        ..||+.|+.|..+..+ ..+|.+.-+|+.+..+..|+.|.++.|.+
T Consensus       293 L~kLy~n~NkL~F--------eGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrL  351 (1255)
T KOG0444|consen  293 LTKLYANNNKLTF--------EGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRL  351 (1255)
T ss_pred             HHHHHhccCcccc--------cCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccce
Confidence            5555555555422        2245555555444444 34444444444444444444444444443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.56  E-value=4.5e-15  Score=161.41  Aligned_cols=160  Identities=24%  Similarity=0.213  Sum_probs=107.0

Q ss_pred             CCCcccEEeccCC----CcCcccCCCCCCCEEEccCCCCC-cCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCE
Q psy2947          59 YFSHAFLLSLSYT----PIGRRIFKCDTVEVLSLKSNSLT-SLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTH  133 (441)
Q Consensus        59 ~l~~L~~l~l~~n----~i~~~~~~l~~L~~L~l~~n~l~-~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~  133 (441)
                      .+++|+.|+|++|    .+|..+..+++|++|+|++|.+. .+|..++.+++|++|++++|.+. +.+|..++++++|++
T Consensus       138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~  216 (968)
T PLN00113        138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLV-GQIPRELGQMKSLKW  216 (968)
T ss_pred             ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCc-CcCChHHcCcCCccE
Confidence            3566777777776    34566777888888888888887 77778888888888888888887 778888888888888


Q ss_pred             EEccCCCCC-ccchhhcCCCCCCEEEccCCcCccCc--c------c-------ccccccccccccccchhHHH-Hhhccc
Q psy2947         134 LYLDNNLLD-ALPGFLLSMPQLDTVYRHGNHNYFKS--T------F-------MWYHSDIHARIRSTSTRDEV-LRKQKK  196 (441)
Q Consensus       134 L~l~~n~l~-~lp~~~~~l~~L~~L~l~~N~~~~~~--~------~-------~~~~~~~p~~l~~l~~~~~~-l~~~~~  196 (441)
                      |+|++|++. .+|..++.+++|++|++++|.+....  .      +       ..+.+.+|.++..++.+..+ +.+|.+
T Consensus       217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  296 (968)
T PLN00113        217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL  296 (968)
T ss_pred             EECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee
Confidence            888888884 67888888888888888888742110  0      0       00122334444444444444 444444


Q ss_pred             -ccCCchhhhhhhhcccccccccC
Q psy2947         197 -LHQPSRLQDLAVQSVIASKENFF  219 (441)
Q Consensus       197 -~~~p~~l~~l~~l~~l~l~~n~~  219 (441)
                       ..+|..+..+++|+.+++++|.+
T Consensus       297 ~~~~p~~~~~l~~L~~L~l~~n~~  320 (968)
T PLN00113        297 SGEIPELVIQLQNLEILHLFSNNF  320 (968)
T ss_pred             ccCCChhHcCCCCCcEEECCCCcc
Confidence             23444555555555555555544

>KOG0034|consensus

Probab=99.56  E-value=1.6e-13  Score=116.20  Aligned_cols=101  Identities=24%  Similarity=0.407  Sum_probs=74.9

Q ss_pred             HHHHHHhhcCCCCCc-ccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh-CCCCC--HHH---
Q psy2947         336 VVDAFKAADTTKSGK-LSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW-GEGLS--SKE---  408 (441)
Q Consensus       336 ~~~~f~~~D~d~~g~-i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~-~~~l~--~~~---  408 (441)
                      ...+++.||.+++|. |++++|..++.........+++++-+|+.||.+++|.|+.+|+.+++..+ +...+  ++.   
T Consensus        68 ~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~  147 (187)
T KOG0034|consen   68 ADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLED  147 (187)
T ss_pred             HHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHH
Confidence            456677777777777 88888888887776555555678888888888888888888888888774 33333  333   


Q ss_pred             -HHHHHHHhCCCCCCceeHHHHHHHHhcc
Q psy2947         409 -VDQIFREANVTMNSKVRYEDFVKIACAP  436 (441)
Q Consensus       409 -~~~l~~~~d~d~dg~i~~~ef~~~l~~~  436 (441)
                       ++.+|.++|.|+||+|+++||.+++.+.
T Consensus       148 i~d~t~~e~D~d~DG~IsfeEf~~~v~~~  176 (187)
T KOG0034|consen  148 IVDKTFEEADTDGDGKISFEEFCKVVEKQ  176 (187)
T ss_pred             HHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence             4567888888888888888888887654

>KOG0034|consensus

Probab=99.52  E-value=2.4e-13  Score=115.07  Aligned_cols=140  Identities=19%  Similarity=0.284  Sum_probs=115.2

Q ss_pred             ceecccchHHHHHhhhccccC---CCccCHHHHHHHHHHcCCCcCHHHHHH-HHHhCCCc-ccHHHHHHHHHhhcCCCCC
Q psy2947         258 VFTFKTPYLEFRECFFLFARN---GTIKTLDELSVIMRSLGMSPTIAELKK-YLAEKGGK-LSFPDFLKVMHTHSKAEDI  332 (441)
Q Consensus       258 ~~l~~~~~~~l~~~f~~~d~~---G~i~~~~el~~~~~~~~~~~~~~~~~~-~~~~~~g~-i~~~ef~~~~~~~~~~~~~  332 (441)
                      ..++.+++..+...|..++..   |++ +.+++..+. .+..++....+-. ++.+++|. |++++|+..+..+......
T Consensus        25 ~~fs~~EI~~L~~rF~kl~~~~~~g~l-t~eef~~i~-~~~~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~  102 (187)
T KOG0034|consen   25 TQFSANEIERLYERFKKLDRNNGDGYL-TKEEFLSIP-ELALNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASK  102 (187)
T ss_pred             cccCHHHHHHHHHHHHHhccccccCcc-CHHHHHHHH-HHhcCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccH
Confidence            346678999999999999975   788 899999888 4445555555544 44566776 9999999999999888777


Q ss_pred             HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCC--h----HHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDI--P----KEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~--~----~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      .++++-+|+.||.+++|.|+++|+.+++.........  +    +.++..|..+|.|+||.|+++||.+++..
T Consensus       103 ~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~  175 (187)
T KOG0034|consen  103 REKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEK  175 (187)
T ss_pred             HHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHc
Confidence            7899999999999999999999999999887664443  3    34566799999999999999999999865

>PLN03150 hypothetical protein; Provisional

Probab=99.51  E-value=3.8e-14  Score=144.90  Aligned_cols=154  Identities=25%  Similarity=0.251  Sum_probs=121.7

Q ss_pred             CCCCccCeeEEeeccccCCCCCcCCCCCCCCCCCcCC-CCCccCCCCccCCCCCCCCCCcccEEeccCC----CcCcccC
Q psy2947           4 PAKNNEGFQATRNKQGVGFSRRSSFKNKNSTPQTACQ-RNCSLEVGGICSHIWIPQYFSHAFLLSLSYT----PIGRRIF   78 (441)
Q Consensus         4 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~-~~c~~~~~~~c~~~~~~~~l~~L~~l~l~~n----~i~~~~~   78 (441)
                      .+.+.|+.||+.+|+++..+..   .+|++.+   |. ..|. |.|+.|..-.. .....++.|+|++|    .+|..+.
T Consensus       368 ~t~~~~~~aL~~~k~~~~~~~~---~~W~g~~---C~p~~~~-w~Gv~C~~~~~-~~~~~v~~L~L~~n~L~g~ip~~i~  439 (623)
T PLN03150        368 KTLLEEVSALQTLKSSLGLPLR---FGWNGDP---CVPQQHP-WSGADCQFDST-KGKWFIDGLGLDNQGLRGFIPNDIS  439 (623)
T ss_pred             ccCchHHHHHHHHHHhcCCccc---CCCCCCC---CCCcccc-cccceeeccCC-CCceEEEEEECCCCCccccCCHHHh
Confidence            4567789999999998865432   2677654   63 3334 57999963211 11235788999988    4677888


Q ss_pred             CCCCCCEEEccCCCCC-cCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEccCCCC-CccchhhcCC-CCCC
Q psy2947          79 KCDTVEVLSLKSNSLT-SLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLL-DALPGFLLSM-PQLD  155 (441)
Q Consensus        79 ~l~~L~~L~l~~n~l~-~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l-~~lp~~~~~l-~~L~  155 (441)
                      .+++|+.|+|++|.++ .+|..++.+++|+.|+|++|.++ |.+|..++++++|++|+|++|++ +.+|..++.+ .++.
T Consensus       440 ~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~ls-g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~  518 (623)
T PLN03150        440 KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN-GSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRA  518 (623)
T ss_pred             CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCC-CCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCc
Confidence            9999999999999998 88888999999999999999998 89999999999999999999999 5889777653 4677


Q ss_pred             EEEccCCcCcc
Q psy2947         156 TVYRHGNHNYF  166 (441)
Q Consensus       156 ~L~l~~N~~~~  166 (441)
                      .+++.+|...|
T Consensus       519 ~l~~~~N~~lc  529 (623)
T PLN03150        519 SFNFTDNAGLC  529 (623)
T ss_pred             eEEecCCcccc
Confidence            88999998644

>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]

Probab=99.48  E-value=5.8e-13  Score=108.64  Aligned_cols=117  Identities=22%  Similarity=0.332  Sum_probs=101.9

Q ss_pred             HHHHHhhhccccCCCccCHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcC
Q psy2947         266 LEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADT  345 (441)
Q Consensus       266 ~~l~~~f~~~d~~G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~  345 (441)
                      .++..+++   .-|+..+..++..++..++            . +.+.|+|++|..++..........++++++|+.||.
T Consensus        40 ~el~~ilr---~lg~~~s~~ei~~l~~~~d------------~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~  103 (160)
T COG5126          40 NELGKILR---SLGFNPSEAEINKLFEEID------------A-GNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDK  103 (160)
T ss_pred             HHHHHHHH---HcCCCCcHHHHHHHHHhcc------------C-CCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCC
Confidence            34444442   3466667788999998887            5 889999999999999998888899999999999999


Q ss_pred             CCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         346 TKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       346 d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      |++|+|+..|++.++..+ +....+++++.+++.+|.|++|.|+++||++.+..
T Consensus       104 d~dG~Is~~eL~~vl~~l-ge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~  156 (160)
T COG5126         104 DHDGYISIGELRRVLKSL-GERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD  156 (160)
T ss_pred             CCCceecHHHHHHHHHhh-cccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence            999999999999999977 66677899999999999999999999999998754

>KOG4237|consensus

Probab=99.47  E-value=9.3e-15  Score=133.07  Aligned_cols=171  Identities=23%  Similarity=0.256  Sum_probs=129.6

Q ss_pred             CCcCCCCCccCC---C-CccCCCCCCCCCCcccEEeccCCCcCcccCCCCCCCEEEccCCCCCcCCcC-ccCCCCCcEEE
Q psy2947          36 QTACQRNCSLEV---G-GICSHIWIPQYFSHAFLLSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLC  110 (441)
Q Consensus        36 ~~~C~~~c~~~~---~-~~c~~~~~~~~l~~L~~l~l~~n~i~~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~  110 (441)
                      ..+||..|.|..   + |.|+..|.              .+||..+.  .....++|..|+|+.||+. |+.+.+|+.||
T Consensus        34 ~~~CP~pC~Cs~~~g~~VdCr~~GL--------------~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLd   97 (498)
T KOG4237|consen   34 ASACPAPCTCSDVEGGIVDCRGKGL--------------TEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLD   97 (498)
T ss_pred             cccCCCCcccCCCCCceEEccCCCc--------------ccCcccCC--CcceEEEeccCCcccCChhhccchhhhceec
Confidence            447999999976   2 78987664              24554443  3567889999999999988 99999999999


Q ss_pred             ccCCcCCCCCCchhhhcCCCCCEEEcc-CCCCCccc-hhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhH
Q psy2947         111 LTDNCLQNASIPFTLTFCKNLTHLYLD-NNLLDALP-GFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRD  188 (441)
Q Consensus       111 l~~n~l~~~~~p~~~~~l~~L~~L~l~-~n~l~~lp-~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~  188 (441)
                      ||+|.|+ ..-|..|.++++|..|-+- +|+|+.+| ..|+++.+|+.|.+.-|++.|..         ...+..++.+.
T Consensus        98 LS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir---------~~al~dL~~l~  167 (498)
T KOG4237|consen   98 LSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIR---------QDALRDLPSLS  167 (498)
T ss_pred             ccccchh-hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchh---------HHHHHHhhhcc
Confidence            9999998 5667788999988777555 48999999 78899999999888888865543         45667777776


Q ss_pred             HH-HhhcccccCCc-hhhhhhhhcccccccccCCCCCCCchhhhHH
Q psy2947         189 EV-LRKQKKLHQPS-RLQDLAVQSVIASKENFFEPGLFPGPLVDYI  232 (441)
Q Consensus       189 ~~-l~~~~~~~~p~-~l~~l~~l~~l~l~~n~~~~~~~p~~~~~~l  232 (441)
                      .+ +-.|.+..++. ++..+..++.+.+..|++-+.+--.++..++
T Consensus       168 lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~  213 (498)
T KOG4237|consen  168 LLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDL  213 (498)
T ss_pred             hhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHH
Confidence            66 66677777775 7888889999999999866543333444433

>KOG0472|consensus

Probab=99.46  E-value=2.5e-14  Score=130.60  Aligned_cols=160  Identities=24%  Similarity=0.315  Sum_probs=116.3

Q ss_pred             CCCCcccEEeccCC---CcCcccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCC----------------
Q psy2947          58 QYFSHAFLLSLSYT---PIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQN----------------  118 (441)
Q Consensus        58 ~~l~~L~~l~l~~n---~i~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~----------------  118 (441)
                      .++.+|..|||..|   ++|..++.+++|.+||+|+|.|+.+|.+++++ +|+.|.+.||.+..                
T Consensus       249 ~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKy  327 (565)
T KOG0472|consen  249 KHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKY  327 (565)
T ss_pred             cccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHH
Confidence            46889999999999   67899999999999999999999999999999 89988888876541                


Q ss_pred             --------------------------------------------------------------------------------
Q psy2947         119 --------------------------------------------------------------------------------  118 (441)
Q Consensus       119 --------------------------------------------------------------------------------  118 (441)
                                                                                                      
T Consensus       328 Lrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L  407 (565)
T KOG0472|consen  328 LRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRL  407 (565)
T ss_pred             HHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhh
Confidence                                                                                            


Q ss_pred             -----------------CCCchhhhcCCCCCEEEccCCCCCccchhhcCCCCCCEEEccCCcCccCcccccccccccccc
Q psy2947         119 -----------------ASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARI  181 (441)
Q Consensus       119 -----------------~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l  181 (441)
                                       +.+|..+..+++|+.|+|++|.+..+|..++.+..|+.|+++.|++.+.          |..+
T Consensus       408 ~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~l----------P~~~  477 (565)
T KOG0472|consen  408 VELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRML----------PECL  477 (565)
T ss_pred             HHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccc----------hHHH
Confidence                             3344556677889999999999999998888999999999999987443          4444


Q ss_pred             cccchhHHH-HhhcccccCCch-hhhhhhhcccccccccCCCCCCCchhhh
Q psy2947         182 RSTSTRDEV-LRKQKKLHQPSR-LQDLAVQSVIASKENFFEPGLFPGPLVD  230 (441)
Q Consensus       182 ~~l~~~~~~-l~~~~~~~~p~~-l~~l~~l~~l~l~~n~~~~~~~p~~~~~  230 (441)
                      ..+..+..+ .++|++..+++. +.++.+|.+|++.+|.+..  +|..+..
T Consensus       478 y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~--IPp~Lgn  526 (565)
T KOG0472|consen  478 YELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQ--IPPILGN  526 (565)
T ss_pred             hhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhh--CChhhcc
Confidence            444444444 233445444443 5555555555555554332  4444433

>KOG0044|consensus

Probab=99.46  E-value=8.8e-13  Score=111.58  Aligned_cols=139  Identities=18%  Similarity=0.231  Sum_probs=110.5

Q ss_pred             eecccchHHHHHhhhccccCCCccCHHHHHHHHHHcCCCcCHHHHHH-HH----HhCCCcccHHHHHHHHHhhcCCCCCH
Q psy2947         259 FTFKTPYLEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKK-YL----AEKGGKLSFPDFLKVMHTHSKAEDIP  333 (441)
Q Consensus       259 ~l~~~~~~~l~~~f~~~d~~G~i~~~~el~~~~~~~~~~~~~~~~~~-~~----~~~~g~i~~~ef~~~~~~~~~~~~~~  333 (441)
                      .++..+++.+...|..-.+.|.+ +.++++.+++.....-....+.. ++    .+++|.|+++||+..+...... ..+
T Consensus        22 ~f~~~ei~~~Yr~Fk~~cP~G~~-~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rG-t~e   99 (193)
T KOG0044|consen   22 KFSKKEIQQWYRGFKNECPSGRL-TLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRG-TLE   99 (193)
T ss_pred             CCCHHHHHHHHHHhcccCCCCcc-CHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCC-cHH
Confidence            45567777777888777778999 78999999999887444444433 22    4789999999999999876443 567


Q ss_pred             HHHHHHHHhhcCCCCCcccHHHHHHHHHhhc---c-------CCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTHS---K-------AEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       334 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~---~-------~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      +.+.++|+.||.|++|+|+++|+..++....   .       ....++.+..+|+.+|.|+||.||.+||....++
T Consensus       100 ekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~  175 (193)
T KOG0044|consen  100 EKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA  175 (193)
T ss_pred             HHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence            8888999999999999999999998776532   1       1112467888999999999999999999999865

>KOG0036|consensus

Probab=99.45  E-value=1.9e-12  Score=118.18  Aligned_cols=118  Identities=14%  Similarity=0.294  Sum_probs=92.8

Q ss_pred             CCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccH
Q psy2947         311 GGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPA  390 (441)
Q Consensus       311 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~  390 (441)
                      +|.++..+..+.+.....+....+-.+.+|+.+|.|.+|.+|++||+..+...      +.++..+|+..|.+.||.|+.
T Consensus        28 ~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~------E~~l~~~F~~iD~~hdG~i~~  101 (463)
T KOG0036|consen   28 DGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNK------ELELYRIFQSIDLEHDGKIDP  101 (463)
T ss_pred             CCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHh------HHHHHHHHhhhccccCCccCH
Confidence            33333333333333333333445566777888999999999999999988876      567888999999999999999


Q ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         391 KYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       391 ~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      +|+.+.++++|..+++++++.+|+.+|+++++.|+++||..++.
T Consensus       102 ~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~l  145 (463)
T KOG0036|consen  102 NEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLL  145 (463)
T ss_pred             HHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhh
Confidence            99999999999999999999999999999999999999988763

>KOG0027|consensus

Probab=99.42  E-value=1.8e-12  Score=108.18  Aligned_cols=103  Identities=21%  Similarity=0.285  Sum_probs=91.4

Q ss_pred             HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCC-----CHH
Q psy2947         333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGL-----SSK  407 (441)
Q Consensus       333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l-----~~~  407 (441)
                      ..+++.+|..||.|++|.|+..|+..+++.+ ....+..++..+++.+|.+++|.|+++||..++...+...     +.+
T Consensus         7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~l-g~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~   85 (151)
T KOG0027|consen    7 ILELKEAFQLFDKDGDGKISVEELGAVLRSL-GQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSE   85 (151)
T ss_pred             HHHHHHHHHHHCCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHH
Confidence            4578999999999999999999999999998 4556688999999999999999999999999999865332     345


Q ss_pred             HHHHHHHHhCCCCCCceeHHHHHHHHhcc
Q psy2947         408 EVDQIFREANVTMNSKVRYEDFVKIACAP  436 (441)
Q Consensus       408 ~~~~l~~~~d~d~dg~i~~~ef~~~l~~~  436 (441)
                      ++.++|+.+|.|++|.|+.+|+.++|.+-
T Consensus        86 el~eaF~~fD~d~~G~Is~~el~~~l~~l  114 (151)
T KOG0027|consen   86 ELKEAFRVFDKDGDGFISASELKKVLTSL  114 (151)
T ss_pred             HHHHHHHHHccCCCCcCcHHHHHHHHHHh
Confidence            89999999999999999999999998653

>KOG4194|consensus

Probab=99.38  E-value=7e-14  Score=133.29  Aligned_cols=154  Identities=17%  Similarity=0.228  Sum_probs=88.9

Q ss_pred             CCCcccEEeccCCCcC----cccCCCCCCCEEEccCCCCCcC-CcCccCCCCCcEEEccCCcCCCCCCc-hhhhcCCCCC
Q psy2947          59 YFSHAFLLSLSYTPIG----RRIFKCDTVEVLSLKSNSLTSL-PPDIGRLTNLRVLCLTDNCLQNASIP-FTLTFCKNLT  132 (441)
Q Consensus        59 ~l~~L~~l~l~~n~i~----~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~~~~p-~~~~~l~~L~  132 (441)
                      .+.++++|+|+.|.+.    ..+++++.|+.|+||+|.|..+ ++++...++|++|+|++|+|+  .++ .++..|+.|+
T Consensus       267 ~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~--~l~~~sf~~L~~Le  344 (873)
T KOG4194|consen  267 GLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT--RLDEGSFRVLSQLE  344 (873)
T ss_pred             eecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc--cCChhHHHHHHHhh
Confidence            3455555555555432    3455556666666666665533 333555556666666666665  333 2455555666


Q ss_pred             EEEccCCCCCccc-hhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCC-chhhhhhhh
Q psy2947         133 HLYLDNNLLDALP-GFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQP-SRLQDLAVQ  209 (441)
Q Consensus       133 ~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p-~~l~~l~~l  209 (441)
                      .|.|+.|.+..+- .+|..+++|+.|+|++|.+      .|....--..+..++.+..+ +.+|++..+| ..+..|..|
T Consensus       345 ~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~l------s~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~L  418 (873)
T KOG4194|consen  345 ELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNEL------SWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEAL  418 (873)
T ss_pred             hhcccccchHHHHhhHHHHhhhhhhhcCcCCeE------EEEEecchhhhccchhhhheeecCceeeecchhhhccCccc
Confidence            6666666665554 4455556666666666653      22222222345556777777 7788887777 466778888


Q ss_pred             cccccccccCC
Q psy2947         210 SVIASKENFFE  220 (441)
Q Consensus       210 ~~l~l~~n~~~  220 (441)
                      +.|++.+|.+.
T Consensus       419 E~LdL~~Naia  429 (873)
T KOG4194|consen  419 EHLDLGDNAIA  429 (873)
T ss_pred             ceecCCCCcce
Confidence            88888877654

>KOG0472|consensus

Probab=99.37  E-value=2e-14  Score=131.13  Aligned_cols=167  Identities=25%  Similarity=0.245  Sum_probs=98.0

Q ss_pred             CCcccEEeccCC---CcCcccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEc
Q psy2947          60 FSHAFLLSLSYT---PIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL  136 (441)
Q Consensus        60 l~~L~~l~l~~n---~i~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l  136 (441)
                      +.+|..++.++|   .+|+.++.+..|..|+..+|+++.+|++++.+.+|..|++.+|.++  .+|+....++.|++||.
T Consensus       113 ~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~--~l~~~~i~m~~L~~ld~  190 (565)
T KOG0472|consen  113 LISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLK--ALPENHIAMKRLKHLDC  190 (565)
T ss_pred             hhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchh--hCCHHHHHHHHHHhccc
Confidence            344455555555   3455555555666666666666666666666666666666666665  55655555677777777


Q ss_pred             cCCCCCccchhhcCCCCCCEEEccCCcCccCcccccc------------ccccccccc-ccchhHHH-HhhcccccCCch
Q psy2947         137 DNNLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWY------------HSDIHARIR-STSTRDEV-LRKQKKLHQPSR  202 (441)
Q Consensus       137 ~~n~l~~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~------------~~~~p~~l~-~l~~~~~~-l~~~~~~~~p~~  202 (441)
                      ..|-++.+|..++.+.+|..|++..|.+...+.|..-            ...+|.... .++.+..+ ++.|++..+|..
T Consensus       191 ~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde  270 (565)
T KOG0472|consen  191 NSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDE  270 (565)
T ss_pred             chhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchH
Confidence            7777777777777777777777777776554433210            011232222 34444444 566666666666


Q ss_pred             hhhhhhhcccccccccCCCCCCCchhhh
Q psy2947         203 LQDLAVQSVIASKENFFEPGLFPGPLVD  230 (441)
Q Consensus       203 l~~l~~l~~l~l~~n~~~~~~~p~~~~~  230 (441)
                      +.-|.+|..|++++|.++.  +|.++..
T Consensus       271 ~clLrsL~rLDlSNN~is~--Lp~sLgn  296 (565)
T KOG0472|consen  271 ICLLRSLERLDLSNNDISS--LPYSLGN  296 (565)
T ss_pred             HHHhhhhhhhcccCCcccc--CCccccc
Confidence            6666666666666665443  5555444

>KOG0028|consensus

Probab=99.34  E-value=1.4e-11  Score=97.92  Aligned_cols=119  Identities=22%  Similarity=0.337  Sum_probs=102.4

Q ss_pred             HHHhhhccccCCCccCHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCC
Q psy2947         268 FRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK  347 (441)
Q Consensus       268 l~~~f~~~d~~G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~  347 (441)
                      ..++...+...|.-...+++..++..++            +++.|.|++++|...+........+.++++.+|+.+|.|+
T Consensus        52 ~~EL~vAmralGFE~~k~ei~kll~d~d------------k~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~  119 (172)
T KOG0028|consen   52 VEELKVAMRALGFEPKKEEILKLLADVD------------KEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDK  119 (172)
T ss_pred             HHHHHHHHHHcCCCcchHHHHHHHHhhh------------hccCceechHHHHHHHHHHHhccCcHHHHHHHHHcccccC
Confidence            3344333455565546788888887666            8899999999999999988887779999999999999999


Q ss_pred             CCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         348 SGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       348 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      +|.|+..+|+.++..+ +...+++++.+++..+|.|++|.|+.+||.++|+.
T Consensus       120 ~Gkis~~~lkrvakeL-genltD~El~eMIeEAd~d~dgevneeEF~~imk~  170 (172)
T KOG0028|consen  120 TGKISQRNLKRVAKEL-GENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK  170 (172)
T ss_pred             CCCcCHHHHHHHHHHh-CccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence            9999999999999998 56677899999999999999999999999999874

>KOG4223|consensus

Probab=99.31  E-value=2.2e-11  Score=108.40  Aligned_cols=164  Identities=19%  Similarity=0.295  Sum_probs=117.2

Q ss_pred             HHHHhhhcccc--CCCccCHHHHHHHHHHcC-------CCcCHHHHHHHH-----------HhCCCcccHHHHHHHHHhh
Q psy2947         267 EFRECFFLFAR--NGTIKTLDELSVIMRSLG-------MSPTIAELKKYL-----------AEKGGKLSFPDFLKVMHTH  326 (441)
Q Consensus       267 ~l~~~f~~~d~--~G~i~~~~el~~~~~~~~-------~~~~~~~~~~~~-----------~~~~g~i~~~ef~~~~~~~  326 (441)
                      +..+.|..+|+  +|.| +.++....+....       ........+++.           .+++|.++.+||..++..-
T Consensus       114 ~~~~~~~~~d~~~Dg~i-~~eey~~~~~~~~~~~~~~~d~e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPE  192 (325)
T KOG4223|consen  114 EAARRWDEYDKNKDGFI-TWEEYLPQTYGRVDLPDEFPDEEDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPE  192 (325)
T ss_pred             HHHHHHHHhccCcccee-eHHHhhhhhhhcccCccccccchhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChh
Confidence            34445555554  4888 6676655544321       011112222222           3689999999999998755


Q ss_pred             cCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCCh----HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCC
Q psy2947         327 SKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIP----KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGE  402 (441)
Q Consensus       327 ~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~----~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~  402 (441)
                      ..+.+..=.+++...-.|+|+||.|+++||..-|..........    .+-+..+...|+|+||+++.+|++.++..-+.
T Consensus       193 e~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~  272 (325)
T KOG4223|consen  193 EHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTEREQFFEFRDKNKDGKLDGDELLDWILPSEQ  272 (325)
T ss_pred             hcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccccccHHHHHHHhhcCCCCccCHHHHhcccCCCCc
Confidence            44444444577778889999999999999999777654322211    13345677789999999999999999988777


Q ss_pred             CCCHHHHHHHHHHhCCCCCCceeHHHHHH
Q psy2947         403 GLSSKEVDQIFREANVTMNSKVRYEDFVK  431 (441)
Q Consensus       403 ~l~~~~~~~l~~~~d~d~dg~i~~~ef~~  431 (441)
                      .....++..++...|.|+||++|++|-+.
T Consensus       273 d~A~~EA~hL~~eaD~dkD~kLs~eEIl~  301 (325)
T KOG4223|consen  273 DHAKAEARHLLHEADEDKDGKLSKEEILE  301 (325)
T ss_pred             cHHHHHHHHHhhhhccCccccccHHHHhh
Confidence            78889999999999999999999999765

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.28  E-value=4e-12  Score=107.31  Aligned_cols=102  Identities=32%  Similarity=0.368  Sum_probs=43.7

Q ss_pred             CCcccEEeccCCCcC--cccC-CCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhh-hcCCCCCEEE
Q psy2947          60 FSHAFLLSLSYTPIG--RRIF-KCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTL-TFCKNLTHLY  135 (441)
Q Consensus        60 l~~L~~l~l~~n~i~--~~~~-~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~-~~l~~L~~L~  135 (441)
                      ...++.|+|++|.|+  +.+. .+.+|+.|+|++|.|+.++ ++..++.|++|++++|+|+  .++..+ ..+++|++|+
T Consensus        18 ~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~--~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRIS--SISEGLDKNLPNLQELY   94 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS-----S-CHHHHHH-TT--EEE
T ss_pred             ccccccccccccccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCC--ccccchHHhCCcCCEEE
Confidence            456899999999877  4565 4789999999999999885 6888999999999999998  787666 4689999999


Q ss_pred             ccCCCCCccc--hhhcCCCCCCEEEccCCcC
Q psy2947         136 LDNNLLDALP--GFLLSMPQLDTVYRHGNHN  164 (441)
Q Consensus       136 l~~n~l~~lp--~~~~~l~~L~~L~l~~N~~  164 (441)
                      +++|+|..+.  ..+..+++|+.|++.+|++
T Consensus        95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv  125 (175)
T PF14580_consen   95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPV  125 (175)
T ss_dssp             -TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred             CcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence            9999997765  5677899999999999995

>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13

Probab=99.28  E-value=1.2e-11  Score=91.84  Aligned_cols=65  Identities=17%  Similarity=0.337  Sum_probs=58.4

Q ss_pred             HHHHHHHHHhCC-CCCCcccHHHHHHHHHH-hCCCCCH-HHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         371 KEVVDAFKAADT-TKSGTVPAKYLKHVLVN-WGEGLSS-KEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       371 ~~~~~~f~~~D~-~~~G~is~~ef~~~l~~-~~~~l~~-~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      ..+..+|+.||. +++|+|+..||+.+|+. +|..+++ ++++.+++.+|.|+||.|+|+||+.+|.+
T Consensus         8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~   75 (89)
T cd05022           8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGE   75 (89)
T ss_pred             HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence            456789999999 99999999999999998 8877888 89999999999999999999999998854

S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu

>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E

Probab=99.25  E-value=2.7e-11  Score=85.82  Aligned_cols=61  Identities=28%  Similarity=0.578  Sum_probs=51.1

Q ss_pred             HHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHH----HHHHHHHhCCCCCCceeHHHHHHHH
Q psy2947         373 VVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKE----VDQIFREANVTMNSKVRYEDFVKIA  433 (441)
Q Consensus       373 ~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~----~~~l~~~~d~d~dg~i~~~ef~~~l  433 (441)
                      ++.+|+.+|+|++|+|+.+||+.+++.++...+++.    ++.+|+.+|.|+||.|+++||+++|
T Consensus         2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~   66 (66)
T PF13499_consen    2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM   66 (66)
T ss_dssp             HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred             HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence            678899999999999999999999999886665544    4555999999999999999998875

...

>KOG0532|consensus

Probab=99.22  E-value=6.2e-13  Score=126.63  Aligned_cols=158  Identities=20%  Similarity=0.206  Sum_probs=80.7

Q ss_pred             CCcccEEeccCC---CcCcccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEc
Q psy2947          60 FSHAFLLSLSYT---PIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL  136 (441)
Q Consensus        60 l~~L~~l~l~~n---~i~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l  136 (441)
                      +......+|+.|   .+|...+.+-.|+.|.|..|.|..+|..+.++..|..|||+.|+++  .+|..+..|+ |+.|.+
T Consensus        74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS--~lp~~lC~lp-Lkvli~  150 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS--HLPDGLCDLP-LKVLIV  150 (722)
T ss_pred             ccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhh--cCChhhhcCc-ceeEEE
Confidence            444455566666   3454444455555555555555555555555555555555555555  5555554444 555555


Q ss_pred             cCCCCCccchhhcCCCCCCEEEccCCcCccCcc-ccc------------ccccccccccccchhHHHHhhcccccCCchh
Q psy2947         137 DNNLLDALPGFLLSMPQLDTVYRHGNHNYFKST-FMW------------YHSDIHARIRSTSTRDEVLRKQKKLHQPSRL  203 (441)
Q Consensus       137 ~~n~l~~lp~~~~~l~~L~~L~l~~N~~~~~~~-~~~------------~~~~~p~~l~~l~~~~~~l~~~~~~~~p~~l  203 (441)
                      ++|+++.+|..++.+..|..|+.+.|.+..... +..            -...+|..++.|+....-++.|++..+|-.+
T Consensus       151 sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis~iPv~f  230 (722)
T KOG0532|consen  151 SNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKISYLPVDF  230 (722)
T ss_pred             ecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCceeecchhh
Confidence            555555555555555555555555555421100 000            0022344444443333235555555566556


Q ss_pred             hhhhhhcccccccccCC
Q psy2947         204 QDLAVQSVIASKENFFE  220 (441)
Q Consensus       204 ~~l~~l~~l~l~~n~~~  220 (441)
                      .+|..|++|-|.+|++.
T Consensus       231 r~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  231 RKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             hhhhhheeeeeccCCCC
Confidence            66666666666666554

>KOG0532|consensus

Probab=99.21  E-value=3e-13  Score=128.69  Aligned_cols=133  Identities=26%  Similarity=0.333  Sum_probs=117.7

Q ss_pred             CCCcccEEeccCC---CcCcccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEE
Q psy2947          59 YFSHAFLLSLSYT---PIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLY  135 (441)
Q Consensus        59 ~l~~L~~l~l~~n---~i~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~  135 (441)
                      ++..|+.++|+.|   .+|..++.|+ |+.|-+++|+++.+|..++.+.+|..||.+.|.+.  .+|+.++.+.+|+.|.
T Consensus       119 ~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~--slpsql~~l~slr~l~  195 (722)
T KOG0532|consen  119 NLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQ--SLPSQLGYLTSLRDLN  195 (722)
T ss_pred             hhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhh--hchHHhhhHHHHHHHH
Confidence            4788899999999   4678888875 89999999999999999999999999999999998  9999999999999999


Q ss_pred             ccCCCCCccchhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCchhhh
Q psy2947         136 LDNNLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSRLQD  205 (441)
Q Consensus       136 l~~n~l~~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~l~~  205 (441)
                      +..|++..+|..+..| .|..||++.|++          ..||-.++.+..+..+ |++|.+..-|..+..
T Consensus       196 vrRn~l~~lp~El~~L-pLi~lDfScNki----------s~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~  255 (722)
T KOG0532|consen  196 VRRNHLEDLPEELCSL-PLIRLDFSCNKI----------SYLPVDFRKMRHLQVLQLENNPLQSPPAQICE  255 (722)
T ss_pred             HhhhhhhhCCHHHhCC-ceeeeecccCce----------eecchhhhhhhhheeeeeccCCCCCChHHHHh
Confidence            9999999999888855 588999999997          4578899999999988 899998877765543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.20  E-value=5.7e-11  Score=122.00  Aligned_cols=41  Identities=12%  Similarity=0.109  Sum_probs=32.4

Q ss_pred             hHHH-HhhcccccCCchhhhhhhhcccccccccCCCCCCCchh
Q psy2947         187 RDEV-LRKQKKLHQPSRLQDLAVQSVIASKENFFEPGLFPGPL  228 (441)
Q Consensus       187 ~~~~-l~~~~~~~~p~~l~~l~~l~~l~l~~n~~~~~~~p~~~  228 (441)
                      +..+ +.+|.++.+|..+..++.|..+++++|++.. ..|..+
T Consensus       424 L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~-~~~~~L  465 (788)
T PRK15387        424 LLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE-RTLQAL  465 (788)
T ss_pred             hhhhhhccCcccccChHHhhccCCCeEECCCCCCCc-hHHHHH
Confidence            3445 7889999999999999999999999999873 344443

>KOG0618|consensus

Probab=99.18  E-value=3.1e-12  Score=128.32  Aligned_cols=93  Identities=22%  Similarity=0.278  Sum_probs=72.1

Q ss_pred             hhcCCCCCEEEccCCCCCccc-hhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCch
Q psy2947         125 LTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSR  202 (441)
Q Consensus       125 ~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~  202 (441)
                      +.+..+|+.|+|++|+|..+| ..+.++..|+.|+||+|++          ..+|..+..+..++.+ ...|.+..+| .
T Consensus       379 l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL----------~~Lp~tva~~~~L~tL~ahsN~l~~fP-e  447 (1081)
T KOG0618|consen  379 LVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKL----------TTLPDTVANLGRLHTLRAHSNQLLSFP-E  447 (1081)
T ss_pred             hccccceeeeeecccccccCCHHHHhchHHhHHHhcccchh----------hhhhHHHHhhhhhHHHhhcCCceeech-h
Confidence            344567888888888888888 5567778888888888886          4467778888888888 6678888888 8


Q ss_pred             hhhhhhhcccccccccCCCCCCCchh
Q psy2947         203 LQDLAVQSVIASKENFFEPGLFPGPL  228 (441)
Q Consensus       203 l~~l~~l~~l~l~~n~~~~~~~p~~~  228 (441)
                      +..++.|+++|++.|.+....+|..+
T Consensus       448 ~~~l~qL~~lDlS~N~L~~~~l~~~~  473 (1081)
T KOG0618|consen  448 LAQLPQLKVLDLSCNNLSEVTLPEAL  473 (1081)
T ss_pred             hhhcCcceEEecccchhhhhhhhhhC
Confidence            88999999999999988876655444

>KOG4223|consensus

Probab=99.14  E-value=3.6e-10  Score=100.81  Aligned_cols=129  Identities=15%  Similarity=0.226  Sum_probs=99.6

Q ss_pred             HhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhc-------cCCCCh------HHHH
Q psy2947         308 AEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHS-------KAEDIP------KEVV  374 (441)
Q Consensus       308 ~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~-------~~~~~~------~~~~  374 (441)
                      .+++|.|+..|....+...... ...++..+.|..+|.|.+|.|+++|+........       ......      ..-+
T Consensus        88 ~~~Dgfv~~~El~~wi~~s~k~-~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~~~~~~km~~rDe  166 (325)
T KOG4223|consen   88 SDSDGFVTESELKAWIMQSQKK-YVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEEDNEEYKKMIARDE  166 (325)
T ss_pred             CCCCCceeHHHHHHHHHHHHHH-HHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccchhcHHHHHHHHHHH
Confidence            5678999999998887755332 3345677778889999999999999988776431       111110      1234


Q ss_pred             HHHHHhCCCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhccC
Q psy2947         375 DAFKAADTTKSGTVPAKYLKHVLVNWG-EGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAPV  437 (441)
Q Consensus       375 ~~f~~~D~~~~G~is~~ef~~~l~~~~-~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~~~  437 (441)
                      ..|+..|.|+||.+|.+||..++..-. ..+.+-.+++-+..+|+|+||.|+++||+.-|.+..
T Consensus       167 ~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~  230 (325)
T KOG4223|consen  167 ERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHE  230 (325)
T ss_pred             HHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhcc
Confidence            579999999999999999999998643 446677788999999999999999999999887654

>PLN02964 phosphatidylserine decarboxylase

Probab=99.14  E-value=4e-10  Score=112.64  Aligned_cols=100  Identities=13%  Similarity=0.312  Sum_probs=82.7

Q ss_pred             HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHH---HHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHH
Q psy2947         333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKE---VVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEV  409 (441)
Q Consensus       333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~---~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~  409 (441)
                      .++++++|..+|.|++|.+    +..++..+......+++   ++.+|+.+|.|++|.|+++||..+|..++...+++++
T Consensus       142 i~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL  217 (644)
T PLN02964        142 PESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKK  217 (644)
T ss_pred             HHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHH
Confidence            3668888999999999997    55556555312333343   7899999999999999999999999988877889999


Q ss_pred             HHHHHHhCCCCCCceeHHHHHHHHhcc
Q psy2947         410 DQIFREANVTMNSKVRYEDFVKIACAP  436 (441)
Q Consensus       410 ~~l~~~~d~d~dg~i~~~ef~~~l~~~  436 (441)
                      ..+|+.+|.|++|.|+++||.++|...
T Consensus       218 ~eaFk~fDkDgdG~Is~dEL~~vL~~~  244 (644)
T PLN02964        218 EELFKAADLNGDGVVTIDELAALLALQ  244 (644)
T ss_pred             HHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence            999999999999999999999988763

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.14  E-value=2.1e-10  Score=118.47  Aligned_cols=147  Identities=19%  Similarity=0.217  Sum_probs=99.9

Q ss_pred             CcccEEeccCCC---cCcccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEcc
Q psy2947          61 SHAFLLSLSYTP---IGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLD  137 (441)
Q Consensus        61 ~~L~~l~l~~n~---i~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~  137 (441)
                      ++|+.|+|++|.   +|..+.  ++|+.|++++|+++.+|..+.  .+|+.|++++|.+.  .+|..+.  .+|+.|+++
T Consensus       199 ~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~--~LP~~l~--s~L~~L~Ls  270 (754)
T PRK15370        199 EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRIT--ELPERLP--SALQSLDLF  270 (754)
T ss_pred             cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccC--cCChhHh--CCCCEEECc
Confidence            578899999984   454443  589999999999998887654  47899999999997  8887764  578999999


Q ss_pred             CCCCCccchhhcCCCCCCEEEccCCcCccCccccccccccccccccc---------------chhHHH-HhhcccccCCc
Q psy2947         138 NNLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRST---------------STRDEV-LRKQKKLHQPS  201 (441)
Q Consensus       138 ~n~l~~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l---------------~~~~~~-l~~~~~~~~p~  201 (441)
                      +|+|+.+|..+.  ++|+.|++++|.+...+.      .+|..+..+               +.+..+ +.+|.+..+|.
T Consensus       271 ~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~------~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~  342 (754)
T PRK15370        271 HNKISCLPENLP--EELRYLSVYDNSIRTLPA------HLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPA  342 (754)
T ss_pred             CCccCccccccC--CCCcEEECCCCccccCcc------cchhhHHHHHhcCCccccCCccccccceeccccCCccccCCh
Confidence            999988887554  579999999998754321      112111110               122222 44555555665


Q ss_pred             hhhhhhhhcccccccccCCCCCCCch
Q psy2947         202 RLQDLAVQSVIASKENFFEPGLFPGP  227 (441)
Q Consensus       202 ~l~~l~~l~~l~l~~n~~~~~~~p~~  227 (441)
                      .+.  ++|+.|++++|.+..  +|..
T Consensus       343 ~l~--~sL~~L~Ls~N~L~~--LP~~  364 (754)
T PRK15370        343 SLP--PELQVLDVSKNQITV--LPET  364 (754)
T ss_pred             hhc--CcccEEECCCCCCCc--CChh
Confidence            443  467777777776653  4443

>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B

Probab=99.13  E-value=2.6e-10  Score=84.92  Aligned_cols=65  Identities=14%  Similarity=0.269  Sum_probs=58.4

Q ss_pred             HHHHHHHHHhC-CCCCC-cccHHHHHHHHHH-----hCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         371 KEVVDAFKAAD-TTKSG-TVPAKYLKHVLVN-----WGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       371 ~~~~~~f~~~D-~~~~G-~is~~ef~~~l~~-----~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      ..+.++|+.|| .+|+| .|+.+||+.+|+.     +|...++++++.+++.+|.|++|.|+|+||+.++..
T Consensus         8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~   79 (88)
T cd05027           8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM   79 (88)
T ss_pred             HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence            46778999998 79999 5999999999998     888889999999999999999999999999988754

S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i

>KOG0036|consensus

Probab=99.12  E-value=1.7e-09  Score=99.26  Aligned_cols=159  Identities=14%  Similarity=0.255  Sum_probs=124.2

Q ss_pred             ecccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCC-cCHH----HHHHHHHhCCCcccHHHHHHHHHhhcCCCCC
Q psy2947         260 TFKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMS-PTIA----ELKKYLAEKGGKLSFPDFLKVMHTHSKAEDI  332 (441)
Q Consensus       260 l~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~-~~~~----~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~  332 (441)
                      ..++...+++.+|..+|.+  |++ +..++...+..+... +...    .+..++.+.||.++|+||...+..      .
T Consensus         8 ~~~er~~r~~~lf~~lD~~~~g~~-d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~------~   80 (463)
T KOG0036|consen    8 TDEERDIRIRCLFKELDSKNDGQV-DLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN------K   80 (463)
T ss_pred             CcHHHHHHHHHHHHHhccCCCCce-eHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH------h
Confidence            3456677899999999974  888 899999888888755 3333    334444578999999999999984      4


Q ss_pred             HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHH
Q psy2947         333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQI  412 (441)
Q Consensus       333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l  412 (441)
                      +.++..+|...|.+.||.|+..|+.+.++.+ +-+..+++...+|+..|+++++.|+++|+++.+.-    .+++.++.+
T Consensus        81 E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~-gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll----~p~s~i~di  155 (463)
T KOG0036|consen   81 ELELYRIFQSIDLEHDGKIDPNEIWRYLKDL-GIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLL----YPESDLEDI  155 (463)
T ss_pred             HHHHHHHHhhhccccCCccCHHHHHHHHHHh-CCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhc----CChhHHHHH
Confidence            6789999999999999999999999999988 44566788889999999999999999999999853    235556555


Q ss_pred             HHH------hCCCCCCceeHHHHHH
Q psy2947         413 FRE------ANVTMNSKVRYEDFVK  431 (441)
Q Consensus       413 ~~~------~d~d~dg~i~~~ef~~  431 (441)
                      +..      +|...+..|. |+|..
T Consensus       156 ~~~W~h~~~idigE~~~iP-dg~s~  179 (463)
T KOG0036|consen  156 YDFWRHVLLIDIGEDAVLP-DGDSK  179 (463)
T ss_pred             HHhhhhheEEEccccccCC-cchHH
Confidence            433      4455566666 55544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.10  E-value=3.3e-10  Score=116.99  Aligned_cols=35  Identities=14%  Similarity=0.177  Sum_probs=22.1

Q ss_pred             hHHH-HhhcccccCCchhhhh----hhhcccccccccCCC
Q psy2947         187 RDEV-LRKQKKLHQPSRLQDL----AVQSVIASKENFFEP  221 (441)
Q Consensus       187 ~~~~-l~~~~~~~~p~~l~~l----~~l~~l~l~~n~~~~  221 (441)
                      +..+ +.+|.+..+|..+..+    +.+..+++.+|++..
T Consensus       390 L~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~  429 (754)
T PRK15370        390 LQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSE  429 (754)
T ss_pred             HHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccH
Confidence            3334 6667777777655443    556677777777653

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.10  E-value=7.7e-11  Score=99.50  Aligned_cols=111  Identities=23%  Similarity=0.280  Sum_probs=41.5

Q ss_pred             cCCCCCCCEEEccCCCCCcCCcCcc-CCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEccCCCCCccchhh-cCCCCC
Q psy2947          77 IFKCDTVEVLSLKSNSLTSLPPDIG-RLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGFL-LSMPQL  154 (441)
Q Consensus        77 ~~~l~~L~~L~l~~n~l~~lp~~~~-~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~-~~l~~L  154 (441)
                      +.+...++.|+|++|.|+.+. .++ .+.+|+.|++++|.|+  .++ .+..++.|+.|++++|.|+.++..+ ..+++|
T Consensus        15 ~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~--~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L   90 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQIT--KLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNL   90 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S----T-T----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred             ccccccccccccccccccccc-chhhhhcCCCEEECCCCCCc--ccc-CccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence            345567899999999999874 465 5899999999999998  775 5888999999999999999997655 468999


Q ss_pred             CEEEccCCcCccCcccccccccccccccccchhHHHHhhcccccCCchhhhhhhhcccccccccCCC
Q psy2947         155 DTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEVLRKQKKLHQPSRLQDLAVQSVIASKENFFEP  221 (441)
Q Consensus       155 ~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~l~~~~~~~~p~~l~~l~~l~~l~l~~n~~~~  221 (441)
                      +.|++++|++.....                             + ..+..++.|+.|++.+||+..
T Consensus        91 ~~L~L~~N~I~~l~~-----------------------------l-~~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   91 QELYLSNNKISDLNE-----------------------------L-EPLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             -EEE-TTS---SCCC-----------------------------C-GGGGG-TT--EEE-TT-GGGG
T ss_pred             CEEECcCCcCCChHH-----------------------------h-HHHHcCCCcceeeccCCcccc
Confidence            999999999643321                             1 145566777777777777653

>KOG0618|consensus

Probab=99.09  E-value=1.2e-11  Score=124.13  Aligned_cols=152  Identities=27%  Similarity=0.329  Sum_probs=96.3

Q ss_pred             CCcccEEeccCC---CcCcccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEc
Q psy2947          60 FSHAFLLSLSYT---PIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL  136 (441)
Q Consensus        60 l~~L~~l~l~~n---~i~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l  136 (441)
                      ..+|+++++++|   .+|..++.+.+|+.|++.+|+++.+|..+..+++|+.|.+.+|.+.  .+|.....+++|++|+|
T Consensus       240 p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~--yip~~le~~~sL~tLdL  317 (1081)
T KOG0618|consen  240 PLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELE--YIPPFLEGLKSLRTLDL  317 (1081)
T ss_pred             cccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhh--hCCCcccccceeeeeee
Confidence            356777777777   5677777777777777777777666655555555555555555554  45554455555555555


Q ss_pred             cCCCCCccch--------------------------------------------------hhcCCCCCCEEEccCCcCcc
Q psy2947         137 DNNLLDALPG--------------------------------------------------FLLSMPQLDTVYRHGNHNYF  166 (441)
Q Consensus       137 ~~n~l~~lp~--------------------------------------------------~~~~l~~L~~L~l~~N~~~~  166 (441)
                      ..|+|..+|.                                                  .+.+.++|+.|+|++|++. 
T Consensus       318 ~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-  396 (1081)
T KOG0618|consen  318 QSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-  396 (1081)
T ss_pred             hhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-
Confidence            5555544442                                                  1234455666666666642 


Q ss_pred             Ccccccccccccc-cccccchhHHH-HhhcccccCCchhhhhhhhcccccccccCCCCCCC
Q psy2947         167 KSTFMWYHSDIHA-RIRSTSTRDEV-LRKQKKLHQPSRLQDLAVQSVIASKENFFEPGLFP  225 (441)
Q Consensus       167 ~~~~~~~~~~~p~-~l~~l~~~~~~-l~~~~~~~~p~~l~~l~~l~~l~l~~n~~~~~~~p  225 (441)
                               .+|. .+.++..+..+ +++|++..+|.++..+..|.+|...+|.+..  +|
T Consensus       397 ---------~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~--fP  446 (1081)
T KOG0618|consen  397 ---------SFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLS--FP  446 (1081)
T ss_pred             ---------cCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceee--ch
Confidence                     2343 46667777777 7888888888888888888888777776655  66

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.08  E-value=1.8e-10  Score=118.45  Aligned_cols=15  Identities=20%  Similarity=0.078  Sum_probs=8.7

Q ss_pred             CCCCCcccEEeccCC
Q psy2947          57 PQYFSHAFLLSLSYT   71 (441)
Q Consensus        57 ~~~l~~L~~l~l~~n   71 (441)
                      |..+++|+.|++++|
T Consensus       238 P~lp~~Lk~LdLs~N  252 (788)
T PRK15387        238 PALPPELRTLEVSGN  252 (788)
T ss_pred             CCCCCCCcEEEecCC
Confidence            333456666666666

>KOG0038|consensus

Probab=99.07  E-value=8.7e-10  Score=86.01  Aligned_cols=108  Identities=23%  Similarity=0.310  Sum_probs=66.3

Q ss_pred             HHHcCCCcCHHHHHHHHH-hCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCC
Q psy2947         291 MRSLGMSPTIAELKKYLA-EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDI  369 (441)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~-~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~  369 (441)
                      |..+...|....+.+.+. ++.|.+++++|+.+++.+....+-.-++..+|+.||-|+|+.|..+++...+..+.+.+..
T Consensus        64 MPELkenpfk~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs  143 (189)
T KOG0038|consen   64 MPELKENPFKRRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELS  143 (189)
T ss_pred             ChhhhcChHHHHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCC
Confidence            444555555555555553 5677777777777776665544444556666777777777777777766666666555555


Q ss_pred             hHHH----HHHHHHhCCCCCCcccHHHHHHHHH
Q psy2947         370 PKEV----VDAFKAADTTKSGTVPAKYLKHVLV  398 (441)
Q Consensus       370 ~~~~----~~~f~~~D~~~~G~is~~ef~~~l~  398 (441)
                      ++++    +.++...|.||||.++++||.+++.
T Consensus       144 ~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~  176 (189)
T KOG0038|consen  144 DEEVELICEKVIEEADLDGDGKLSFAEFEHVIL  176 (189)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Confidence            4432    3445566666666666666666554

>KOG1259|consensus

Probab=99.06  E-value=3.6e-11  Score=106.22  Aligned_cols=143  Identities=18%  Similarity=0.161  Sum_probs=104.5

Q ss_pred             cCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEccCCCCCccchhhcCCCCCCE
Q psy2947          77 IFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDT  156 (441)
Q Consensus        77 ~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~  156 (441)
                      +.....|+.||||+|.|+.+..+..-++.++.|++|+|.|.  .+.. ++.+++|++||||+|.++.+-+.-..+-+++.
T Consensus       280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~--~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKt  356 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR--TVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKT  356 (490)
T ss_pred             cchHhhhhhccccccchhhhhhhhhhccceeEEecccccee--eehh-hhhcccceEeecccchhHhhhhhHhhhcCEee
Confidence            34456788888999888888888888888888999988887  5543 78888888889988888877655556777888


Q ss_pred             EEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCC--chhhhhhhhcccccccccCCCCCCCchhhhHHH
Q psy2947         157 VYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQP--SRLQDLAVQSVIASKENFFEPGLFPGPLVDYIA  233 (441)
Q Consensus       157 L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p--~~l~~l~~l~~l~l~~n~~~~~~~p~~~~~~l~  233 (441)
                      |.|++|.+...           ..++.+-.+.++ +++|++..+-  ..+++|+.|+.+.+.+||+..  +|..-.+.++
T Consensus       357 L~La~N~iE~L-----------SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~--~vdYRTKVLa  423 (490)
T KOG1259|consen  357 LKLAQNKIETL-----------SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG--SVDYRTKVLA  423 (490)
T ss_pred             eehhhhhHhhh-----------hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc--cchHHHHHHH
Confidence            88888885332           234444445555 6666664443  468899999999999999875  6665555554


Q ss_pred             hh
Q psy2947         234 RE  235 (441)
Q Consensus       234 ~~  235 (441)
                      +.
T Consensus       424 ~F  425 (490)
T KOG1259|consen  424 RF  425 (490)
T ss_pred             HH
Confidence            44

>KOG4237|consensus

Probab=99.06  E-value=1e-11  Score=113.52  Aligned_cols=111  Identities=20%  Similarity=0.193  Sum_probs=78.2

Q ss_pred             hhcCCCCCEEEccCCCCCccc-hhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccC-Cc
Q psy2947         125 LTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQ-PS  201 (441)
Q Consensus       125 ~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~-p~  201 (441)
                      |..|++|+.|+|++|+|+.|- .+|.+...++.|+|..|++....         ...+..++.+..+ +.+|+++.+ |.
T Consensus       270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~---------~~~f~~ls~L~tL~L~~N~it~~~~~  340 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVS---------SGMFQGLSGLKTLSLYDNQITTVAPG  340 (498)
T ss_pred             HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHH---------HHhhhccccceeeeecCCeeEEEecc
Confidence            455666777777777776664 56666677777777777753322         1235556666666 788888554 77


Q ss_pred             hhhhhhhhcccccccccCCCCCCCchhhhHHHhhhcCCccccccc
Q psy2947         202 RLQDLAVQSVIASKENFFEPGLFPGPLVDYIAREYNQYHVCHYCN  246 (441)
Q Consensus       202 ~l~~l~~l~~l~l~~n~~~~~~~p~~~~~~l~~~~~~~~~~~~~~  246 (441)
                      .+..+..|..+.+-.|+|.+.+--+++.+|+....  ....+.|.
T Consensus       341 aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~--~~~~~~Cq  383 (498)
T KOG4237|consen  341 AFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKS--VVGNPRCQ  383 (498)
T ss_pred             cccccceeeeeehccCcccCccchHHHHHHHhhCC--CCCCCCCC
Confidence            88889999999999999999988899999997776  33444454

>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E

Probab=99.05  E-value=3.2e-10  Score=80.27  Aligned_cols=63  Identities=16%  Similarity=0.284  Sum_probs=53.2

Q ss_pred             HHHHHHHhhcCCCCCcccHHHHHHHHHhhccCC---CChHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy2947         335 EVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAE---DIPKEVVDAFKAADTTKSGTVPAKYLKHVL  397 (441)
Q Consensus       335 ~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~---~~~~~~~~~f~~~D~~~~G~is~~ef~~~l  397 (441)
                      +++++|+.+|.|++|+|+.+||..++.......   ...+.+..+|+.+|+++||.|+++||.++|
T Consensus         1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~   66 (66)
T PF13499_consen    1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM   66 (66)
T ss_dssp             HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred             CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence            368899999999999999999999999874321   123466777999999999999999999875

...

>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6

Probab=99.05  E-value=7.3e-10  Score=82.50  Aligned_cols=64  Identities=19%  Similarity=0.359  Sum_probs=55.8

Q ss_pred             HHHHHHHHhCC-CC-CCcccHHHHHHHHHH---hCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         372 EVVDAFKAADT-TK-SGTVPAKYLKHVLVN---WGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       372 ~~~~~f~~~D~-~~-~G~is~~ef~~~l~~---~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      .+-++|+.||. +| +|+|+.+||+++++.   +|.++++++++++++.+|.|++|+|+|+||+.+|.+
T Consensus        11 ~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~   79 (88)
T cd05029          11 LLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGA   79 (88)
T ss_pred             HHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Confidence            45678999987 77 899999999999963   688899999999999999999999999999988754

S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact

>KOG1259|consensus

Probab=99.02  E-value=5.2e-11  Score=105.25  Aligned_cols=106  Identities=20%  Similarity=0.209  Sum_probs=72.2

Q ss_pred             cCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEccCCCCCccchhhcCCCCCCEEEccCCcCccCccccccccccccc
Q psy2947         101 GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHAR  180 (441)
Q Consensus       101 ~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~  180 (441)
                      .....|++||||+|.|+  .+..++.-++.++.|++|+|.|..+.. +..+++|+.|+|++|.+.....+..       .
T Consensus       281 dTWq~LtelDLS~N~I~--~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~-------K  350 (490)
T KOG1259|consen  281 DTWQELTELDLSGNLIT--QIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHL-------K  350 (490)
T ss_pred             chHhhhhhccccccchh--hhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHh-------h
Confidence            34566788888888887  777788778888888888888877754 6778888888888888655443221       1


Q ss_pred             ccccchhHHH-HhhcccccCCchhhhhhhhcccccccccCC
Q psy2947         181 IRSTSTRDEV-LRKQKKLHQPSRLQDLAVQSVIASKENFFE  220 (441)
Q Consensus       181 l~~l~~~~~~-l~~~~~~~~p~~l~~l~~l~~l~l~~n~~~  220 (441)
                      ++   +...+ +..|.+..+. .+..|.+|..|++++|.+.
T Consensus       351 LG---NIKtL~La~N~iE~LS-GL~KLYSLvnLDl~~N~Ie  387 (490)
T KOG1259|consen  351 LG---NIKTLKLAQNKIETLS-GLRKLYSLVNLDLSSNQIE  387 (490)
T ss_pred             hc---CEeeeehhhhhHhhhh-hhHhhhhheeccccccchh
Confidence            11   11222 4455554444 5777778888888888654

>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z

Probab=98.99  E-value=1.9e-09  Score=81.56  Aligned_cols=63  Identities=16%  Similarity=0.303  Sum_probs=43.6

Q ss_pred             HHHHHHHHhC-CCCCC-cccHHHHHHHHHH-h----CCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         372 EVVDAFKAAD-TTKSG-TVPAKYLKHVLVN-W----GEGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       372 ~~~~~f~~~D-~~~~G-~is~~ef~~~l~~-~----~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      .+..+|+.|| .|++| +|+.+||+.+++. .    +...++++++.+++.+|.|+||.|+|+||+.+|.
T Consensus        11 ~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~   80 (93)
T cd05026          11 TLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVA   80 (93)
T ss_pred             HHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence            4556677777 67777 4777777777765 2    2234566777777777777777777777777664

S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac

>KOG0038|consensus

Probab=98.99  E-value=2.2e-09  Score=83.80  Aligned_cols=100  Identities=22%  Similarity=0.321  Sum_probs=82.3

Q ss_pred             HHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhC-CCCCHHHH----HH
Q psy2947         337 VDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWG-EGLSSKEV----DQ  411 (441)
Q Consensus       337 ~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~-~~l~~~~~----~~  411 (441)
                      +.+...|..||.|.+++++|..++.........+-.+.-+|+.+|-|+|+.|..+++...+..+- ..++++++    +.
T Consensus        74 ~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ek  153 (189)
T KOG0038|consen   74 RRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEK  153 (189)
T ss_pred             HHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence            34556678899999999999999888754444344566689999999999999999999999864 45777774    57


Q ss_pred             HHHHhCCCCCCceeHHHHHHHHhcc
Q psy2947         412 IFREANVTMNSKVRYEDFVKIACAP  436 (441)
Q Consensus       412 l~~~~d~d~dg~i~~~ef~~~l~~~  436 (441)
                      ++.++|.||||++++.||..++.+.
T Consensus       154 vieEAD~DgDgkl~~~eFe~~i~ra  178 (189)
T KOG0038|consen  154 VIEEADLDGDGKLSFAEFEHVILRA  178 (189)
T ss_pred             HHHHhcCCCCCcccHHHHHHHHHhC
Confidence            8899999999999999999988764

>PLN02964 phosphatidylserine decarboxylase

Probab=98.99  E-value=5.8e-09  Score=104.42  Aligned_cols=121  Identities=21%  Similarity=0.229  Sum_probs=88.0

Q ss_pred             eecccchHHHHHhhhccccCCCccCHHHHHHHHHHcC-CCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCHHHHH
Q psy2947         259 FTFKTPYLEFRECFFLFARNGTIKTLDELSVIMRSLG-MSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVV  337 (441)
Q Consensus       259 ~l~~~~~~~l~~~f~~~d~~G~i~~~~el~~~~~~~~-~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~  337 (441)
                      .++..+++++++.|..+|.+|.- .  .++.+++.++ ..++..+.                              ..+.
T Consensus       136 ~f~~kqi~elkeaF~lfD~dgdG-~--iLg~ilrslG~~~pte~e~------------------------------~fi~  182 (644)
T PLN02964        136 DFVTQEPESACESFDLLDPSSSN-K--VVGSIFVSCSIEDPVETER------------------------------SFAR  182 (644)
T ss_pred             hccHHHHHHHHHHHHHHCCCCCC-c--CHHHHHHHhCCCCCCHHHH------------------------------HHHH
Confidence            44566778888889888887543 1  2667777666 23322210                              1267


Q ss_pred             HHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH-------------hCCCC
Q psy2947         338 DAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN-------------WGEGL  404 (441)
Q Consensus       338 ~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~-------------~~~~l  404 (441)
                      .+|+.+|.|++|.|+++||..++..+ .....+++++.+|+.+|.|++|.|+.+||+++|..             +|.++
T Consensus       183 ~mf~~~D~DgdG~IdfdEFl~lL~~l-g~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~~~~~~~~~~cp~cg~~l  261 (644)
T PLN02964        183 RILAIVDYDEDGQLSFSEFSDLIKAF-GNLVAANKKEELFKAADLNGDGVVTIDELAALLALQQEQEPIINNCPVCGEAL  261 (644)
T ss_pred             HHHHHhCCCCCCeEcHHHHHHHHHHh-ccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhcccCcchhhhchhhcCcc
Confidence            77888999999999999999988865 34455778999999999999999999999999887             56556


Q ss_pred             CH-HHHHHHH
Q psy2947         405 SS-KEVDQIF  413 (441)
Q Consensus       405 ~~-~~~~~l~  413 (441)
                      +. +++..|+
T Consensus       262 ~~~~~~~~ii  271 (644)
T PLN02964        262 GVSDKLNAMI  271 (644)
T ss_pred             cchhhHHHHH
Confidence            55 5555555

>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10

Probab=98.96  E-value=2.6e-09  Score=81.20  Aligned_cols=64  Identities=20%  Similarity=0.370  Sum_probs=47.6

Q ss_pred             HHHHHHHHHhCC-CC-CCcccHHHHHHHHHH-----hCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         371 KEVVDAFKAADT-TK-SGTVPAKYLKHVLVN-----WGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       371 ~~~~~~f~~~D~-~~-~G~is~~ef~~~l~~-----~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      ..++.+|+.||. |+ +|.|+.+|++.+++.     +|...++++++.+++.+|.+++|.|+|+||+.++.
T Consensus         8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~   78 (94)
T cd05031           8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVA   78 (94)
T ss_pred             HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence            456677888876 76 588888888887765     35566777788888888888888888888877664

S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.

>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1

Probab=98.95  E-value=3.4e-09  Score=80.24  Aligned_cols=65  Identities=22%  Similarity=0.417  Sum_probs=52.5

Q ss_pred             HHHHHHHHHhC-CCCCC-cccHHHHHHHHHH-hCC----CCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         371 KEVVDAFKAAD-TTKSG-TVPAKYLKHVLVN-WGE----GLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       371 ~~~~~~f~~~D-~~~~G-~is~~ef~~~l~~-~~~----~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      +.++++|+.|| .+++| .|+.+||+.+|+. +|.    ..++++++.+++.+|.|++|.|+|+||+.++.+
T Consensus         9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~   80 (92)
T cd05025           9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAA   80 (92)
T ss_pred             HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence            56778899996 88899 4999999999875 443    357788889999999888999999999887753

S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.

>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A

Probab=98.95  E-value=2.5e-09  Score=72.22  Aligned_cols=52  Identities=25%  Similarity=0.520  Sum_probs=47.7

Q ss_pred             CCCcccHHHHHHHHHHhCCC-CCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         384 KSGTVPAKYLKHVLVNWGEG-LSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       384 ~~G~is~~ef~~~l~~~~~~-l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      ++|.|+.+||+.+|..+|.. ++++++..+|..+|.|++|.|+|+||+.++.+
T Consensus         1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~   53 (54)
T PF13833_consen    1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR   53 (54)
T ss_dssp             SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred             CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence            47999999999999888988 99999999999999999999999999998864

...

>PLN03150 hypothetical protein; Provisional

Probab=98.95  E-value=1.9e-09  Score=110.61  Aligned_cols=82  Identities=27%  Similarity=0.412  Sum_probs=72.7

Q ss_pred             CCCEEEccCCCCC-cCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEccCCCCC-ccchhhcCCCCCCEEEc
Q psy2947          82 TVEVLSLKSNSLT-SLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD-ALPGFLLSMPQLDTVYR  159 (441)
Q Consensus        82 ~L~~L~l~~n~l~-~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~-~lp~~~~~l~~L~~L~l  159 (441)
                      .++.|+|++|.++ .+|..++.+++|+.|+|++|.+. |.+|..++.+++|+.|+|++|++. .+|..++++++|+.|+|
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~-g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIR-GNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCccc-CcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence            3778899999988 78888999999999999999998 889988999999999999999994 78888999999999999


Q ss_pred             cCCcC
Q psy2947         160 HGNHN  164 (441)
Q Consensus       160 ~~N~~  164 (441)
                      ++|.+
T Consensus       498 s~N~l  502 (623)
T PLN03150        498 NGNSL  502 (623)
T ss_pred             cCCcc
Confidence            99983

>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13

Probab=98.94  E-value=4.2e-09  Score=78.23  Aligned_cols=67  Identities=10%  Similarity=0.159  Sum_probs=58.6

Q ss_pred             HHHHHHHHhhcC-CCCCcccHHHHHHHHHhhccCCCCh-HHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         334 KEVVDAFKAADT-TKSGKLSFPDFLKVMHTHSKAEDIP-KEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       334 ~~~~~~f~~~D~-d~~g~i~~~ef~~~~~~~~~~~~~~-~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      ..+..+|+.||. +++|+|+..||+.++.......... ++++.+|+.+|.|+||.|+++||..++..+
T Consensus         8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l   76 (89)
T cd05022           8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL   76 (89)
T ss_pred             HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence            568899999999 9999999999999998833443445 789999999999999999999999999764

S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu

>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11

Probab=98.91  E-value=6.6e-09  Score=77.47  Aligned_cols=65  Identities=6%  Similarity=0.259  Sum_probs=50.8

Q ss_pred             HHHHHHHHH-hCCCCCC-cccHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         371 KEVVDAFKA-ADTTKSG-TVPAKYLKHVLVNW-----GEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       371 ~~~~~~f~~-~D~~~~G-~is~~ef~~~l~~~-----~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      ..+..+|+. +|.+++| +|+.+||+.++...     +....+.+++.+++.+|.|+||.|+|+||+.+|..
T Consensus         9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~   80 (89)
T cd05023           9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGG   80 (89)
T ss_pred             HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence            356677888 6777876 88888888888774     33456788888888888888889999998887753

S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S

>PLN03210 Resistant to P

Probab=98.91  E-value=7.6e-09  Score=113.78  Aligned_cols=101  Identities=19%  Similarity=0.288  Sum_probs=71.3

Q ss_pred             CCcccEEeccCCC---cCcccCCCCCCCEEEccCCC-CCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEE
Q psy2947          60 FSHAFLLSLSYTP---IGRRIFKCDTVEVLSLKSNS-LTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLY  135 (441)
Q Consensus        60 l~~L~~l~l~~n~---i~~~~~~l~~L~~L~l~~n~-l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~  135 (441)
                      +.+|+.|++++|.   +|..+..+++|+.|+|+++. ++.+| .++.+++|+.|++++|... ..+|..+..+++|+.|+
T Consensus       610 ~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L-~~lp~si~~L~~L~~L~  687 (1153)
T PLN03210        610 PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSL-VELPSSIQYLNKLEDLD  687 (1153)
T ss_pred             ccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCc-cccchhhhccCCCCEEe
Confidence            4677778887773   45566677888888887654 55666 4677788888888876544 47787788888888888


Q ss_pred             ccCC-CCCccchhhcCCCCCCEEEccCCc
Q psy2947         136 LDNN-LLDALPGFLLSMPQLDTVYRHGNH  163 (441)
Q Consensus       136 l~~n-~l~~lp~~~~~l~~L~~L~l~~N~  163 (441)
                      +++| .++.+|..+ ++++|+.|++++|.
T Consensus       688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~  715 (1153)
T PLN03210        688 MSRCENLEILPTGI-NLKSLYRLNLSGCS  715 (1153)
T ss_pred             CCCCCCcCccCCcC-CCCCCCEEeCCCCC
Confidence            8775 567777544 56677777777664

syringae 6; Provisional

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.90  E-value=5.6e-10  Score=109.08  Aligned_cols=147  Identities=22%  Similarity=0.261  Sum_probs=78.5

Q ss_pred             CcccEEeccCC---CcCcccCCCC-CCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEc
Q psy2947          61 SHAFLLSLSYT---PIGRRIFKCD-TVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL  136 (441)
Q Consensus        61 ~~L~~l~l~~n---~i~~~~~~l~-~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l  136 (441)
                      +.++.|++.+|   .||.....++ +|+.|+++.|++..+|..+..+++|+.|++++|+++  .+|...+.++.|+.|++
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~--~l~~~~~~~~~L~~L~l  193 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS--DLPKLLSNLSNLNNLDL  193 (394)
T ss_pred             cceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh--hhhhhhhhhhhhhheec
Confidence            44555666555   4445455553 666666666666666655666666666666666665  56655545666666666


Q ss_pred             cCCCCCccchhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCchhhhhhhhcccccc
Q psy2947         137 DNNLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSRLQDLAVQSVIASK  215 (441)
Q Consensus       137 ~~n~l~~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~l~~l~~l~~l~l~  215 (441)
                      ++|++..+|........|+.|.+++|++          ..++..+..+..+..+ +..|++..++..+..++.++.++++
T Consensus       194 s~N~i~~l~~~~~~~~~L~~l~~~~N~~----------~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s  263 (394)
T COG4886         194 SGNKISDLPPEIELLSALEELDLSNNSI----------IELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLS  263 (394)
T ss_pred             cCCccccCchhhhhhhhhhhhhhcCCcc----------eecchhhhhcccccccccCCceeeeccchhccccccceeccc
Confidence            6666666665444444566666666631          1122223333332222 3444444444444555555555555


Q ss_pred             cccC
Q psy2947         216 ENFF  219 (441)
Q Consensus       216 ~n~~  219 (441)
                      +|..
T Consensus       264 ~n~i  267 (394)
T COG4886         264 NNQI  267 (394)
T ss_pred             cccc
Confidence            5543

>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction

Probab=98.89  E-value=7e-09  Score=73.58  Aligned_cols=59  Identities=20%  Similarity=0.292  Sum_probs=47.6

Q ss_pred             HHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         374 VDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       374 ~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      +.+|+.+|++++|.|+.+|++.+++..|  +++++++.+++.+|.+++|.|+|+||+.++.
T Consensus         2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~   60 (67)
T cd00052           2 DQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMH   60 (67)
T ss_pred             hHHHHHhCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHH
Confidence            4578888888888888888888888776  4777888888888888888888888887664

The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.

>PLN03210 Resistant to P

Probab=98.89  E-value=6.2e-09  Score=114.50  Aligned_cols=110  Identities=15%  Similarity=0.155  Sum_probs=64.6

Q ss_pred             CCcEEEccCCcCCCCCCchhhhcCCCCCEEEccCC-CCCccchhhcCCCCCCEEEccCCcCccCcccccccccccccccc
Q psy2947         105 NLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNN-LLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRS  183 (441)
Q Consensus       105 ~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~  183 (441)
                      +|+.|++++|... +.+|.+++++++|+.|++++| .++.+|..+ .+++|+.|++++|...         ..+|.... 
T Consensus       779 sL~~L~Ls~n~~l-~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L---------~~~p~~~~-  846 (1153)
T PLN03210        779 SLTRLFLSDIPSL-VELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRL---------RTFPDIST-  846 (1153)
T ss_pred             cchheeCCCCCCc-cccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcc---------cccccccc-
Confidence            4556666666544 456666677777777777665 456666544 4666777777665421         11222111 


Q ss_pred             cchhHHH-HhhcccccCCchhhhhhhhcccccccccCCCCCCCchhh
Q psy2947         184 TSTRDEV-LRKQKKLHQPSRLQDLAVQSVIASKENFFEPGLFPGPLV  229 (441)
Q Consensus       184 l~~~~~~-l~~~~~~~~p~~l~~l~~l~~l~l~~n~~~~~~~p~~~~  229 (441)
                        .+..+ +.++.+..+|..+..+++|+.|+++++... ..+|..+.
T Consensus       847 --nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L-~~l~~~~~  890 (1153)
T PLN03210        847 --NISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNL-QRVSLNIS  890 (1153)
T ss_pred             --ccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCc-CccCcccc
Confidence              22223 566777788888888888888888764322 22555443

syringae 6; Provisional

>smart00027 EH Eps15 homology domain

Probab=98.86  E-value=1.1e-08  Score=78.11  Aligned_cols=61  Identities=20%  Similarity=0.369  Sum_probs=47.8

Q ss_pred             HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy2947         371 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA  433 (441)
Q Consensus       371 ~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l  433 (441)
                      ..++.+|+.+|.+++|.|+.+|++.+++..|  +++++++.+++.+|.+++|.|+|+||+.++
T Consensus        10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~   70 (96)
T smart00027       10 AKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAM   70 (96)
T ss_pred             HHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHH
Confidence            4566778888888888888888888887765  677778888888888888888888888766

Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.86  E-value=7.1e-10  Score=108.35  Aligned_cols=146  Identities=23%  Similarity=0.214  Sum_probs=127.7

Q ss_pred             cccEEeccCCCcC---cccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEccC
Q psy2947          62 HAFLLSLSYTPIG---RRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDN  138 (441)
Q Consensus        62 ~L~~l~l~~n~i~---~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~  138 (441)
                      +|+.|+++.|.+.   ..+..+++|+.|++++|+++.+|...+.++.|+.|++++|+++  .+|..+..+..|+.+.+++
T Consensus       141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~--~l~~~~~~~~~L~~l~~~~  218 (394)
T COG4886         141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKIS--DLPPEIELLSALEELDLSN  218 (394)
T ss_pred             hcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccc--cCchhhhhhhhhhhhhhcC
Confidence            8999999999554   5789999999999999999999998888999999999999998  9998777778899999999


Q ss_pred             CCCCccchhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCchhhhhhhhcccccccc
Q psy2947         139 NLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSRLQDLAVQSVIASKEN  217 (441)
Q Consensus       139 n~l~~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~l~~l~~l~~l~l~~n  217 (441)
                      |.+..++..+..+.++..|.+.+|++..          ++..+..++.+..+ +.+|.+..++. +..+..++.+++++|
T Consensus       219 N~~~~~~~~~~~~~~l~~l~l~~n~~~~----------~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n  287 (394)
T COG4886         219 NSIIELLSSLSNLKNLSGLELSNNKLED----------LPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGN  287 (394)
T ss_pred             CcceecchhhhhcccccccccCCceeee----------ccchhccccccceecccccccccccc-ccccCccCEEeccCc
Confidence            9888888888899999999999999633          25667777777777 88899988886 999999999999998


Q ss_pred             cCC
Q psy2947         218 FFE  220 (441)
Q Consensus       218 ~~~  220 (441)
                      .+.
T Consensus       288 ~~~  290 (394)
T COG4886         288 SLS  290 (394)
T ss_pred             ccc
Confidence            765

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.85  E-value=1.6e-09  Score=75.22  Aligned_cols=57  Identities=44%  Similarity=0.590  Sum_probs=30.6

Q ss_pred             CCCEEEccCCCCCcCCcC-ccCCCCCcEEEccCCcCCCCCCch-hhhcCCCCCEEEccCCC
Q psy2947          82 TVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPF-TLTFCKNLTHLYLDNNL  140 (441)
Q Consensus        82 ~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~p~-~~~~l~~L~~L~l~~n~  140 (441)
                      +|++|++++|+++.+|+. |..+++|++|++++|.++  .+|+ .+.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~--~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT--SIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSES--EEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC--ccCHHHHcCCCCCCEEeCcCCc
Confidence            455566666655555543 555555555555555555  3332 34555555555555554

...

>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands

Probab=98.82  E-value=2.5e-08  Score=69.26  Aligned_cols=61  Identities=34%  Similarity=0.632  Sum_probs=55.4

Q ss_pred             HHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy2947         373 VVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA  433 (441)
Q Consensus       373 ~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l  433 (441)
                      +..+|..+|.+++|.|+.+||..+++..+.+.+.+.+..+++.+|.+++|.|++++|+.++
T Consensus         2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~   62 (63)
T cd00051           2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM   62 (63)
T ss_pred             HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence            4678999999999999999999999999888999999999999999999999999998865

Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.

>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif

Probab=98.81  E-value=1.5e-08  Score=76.14  Aligned_cols=65  Identities=22%  Similarity=0.388  Sum_probs=50.3

Q ss_pred             HHHHHHHHHhCC--CCCCcccHHHHHHHHHH-hCCC----CCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         371 KEVVDAFKAADT--TKSGTVPAKYLKHVLVN-WGEG----LSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       371 ~~~~~~f~~~D~--~~~G~is~~ef~~~l~~-~~~~----l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      +.++.+|..+|+  +++|.|+.+||+.+++. +|..    .++++++.+++.+|.+++|.|+|++|+.++..
T Consensus         8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~   79 (88)
T cd00213           8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGK   79 (88)
T ss_pred             HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence            456677888888  78888888888888875 4433    34788888888888888888888888887754

Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th

>KOG2643|consensus

Probab=98.80  E-value=1.6e-08  Score=93.45  Aligned_cols=165  Identities=15%  Similarity=0.182  Sum_probs=127.2

Q ss_pred             HHHHHhhhccccCCCccCHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCC--CCCHHHHHHHHHhh
Q psy2947         266 LEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKA--EDIPKEVVDAFKAA  343 (441)
Q Consensus       266 ~~l~~~f~~~d~~G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~--~~~~~~~~~~f~~~  343 (441)
                      ..+..-|...|.++.+ +.+++.+++..+..+.-..|+.+......|.|+-.+|..++-.+...  +....-++.+=+.+
T Consensus       288 saL~~yFFG~rg~~kL-s~deF~~F~e~Lq~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf  366 (489)
T KOG2643|consen  288 SALLTYFFGKRGNGKL-SIDEFLKFQENLQEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKF  366 (489)
T ss_pred             hhHHHHhhccCCCccc-cHHHHHHHHHHHHHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhc
Confidence            3466666666667788 89999999999887777888888887777999999999998877643  22233566777777


Q ss_pred             cCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH-hCCCCCHHHHHHHHHHhCCCCCC
Q psy2947         344 DTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN-WGEGLSSKEVDQIFREANVTMNS  422 (441)
Q Consensus       344 D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~-~~~~l~~~~~~~l~~~~d~d~dg  422 (441)
                      +.+ +..|++.||+++.+.+..-    ..+..+...|- ...+.|+..+|+++... .|..+++..++-+|.-+|.|+||
T Consensus       367 ~~~-~~gISl~Ef~~Ff~Fl~~l----~dfd~Al~fy~-~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg  440 (489)
T KOG2643|consen  367 KDD-GKGISLQEFKAFFRFLNNL----NDFDIALRFYH-MAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDG  440 (489)
T ss_pred             cCC-CCCcCHHHHHHHHHHHhhh----hHHHHHHHHHH-HcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCC
Confidence            776 5669999999988776321    23444433332 34688999999999887 57889999999999999999999


Q ss_pred             ceeHHHHHHHHhccC
Q psy2947         423 KVRYEDFVKIACAPV  437 (441)
Q Consensus       423 ~i~~~ef~~~l~~~~  437 (441)
                      .++++||+..|.+.+
T Consensus       441 ~LS~~EFl~Vmk~Rm  455 (489)
T KOG2643|consen  441 TLSHKEFLAVMKRRM  455 (489)
T ss_pred             cccHHHHHHHHHHHh
Confidence            999999999996553

>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z

Probab=98.80  E-value=2.9e-08  Score=75.04  Aligned_cols=68  Identities=13%  Similarity=0.167  Sum_probs=57.1

Q ss_pred             HHHHHHHHhhc-CCCCC-cccHHHHHHHHHhhc----cCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhC
Q psy2947         334 KEVVDAFKAAD-TTKSG-KLSFPDFLKVMHTHS----KAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWG  401 (441)
Q Consensus       334 ~~~~~~f~~~D-~d~~g-~i~~~ef~~~~~~~~----~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~  401 (441)
                      ..++++|+.|| .|++| +|+..|++.++....    ........++.+++.+|.|++|.|+++||..++..+.
T Consensus        10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~   83 (93)
T cd05026          10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT   83 (93)
T ss_pred             HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence            45788899999 78998 599999999997632    2233567899999999999999999999999998753

S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac

>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B

Probab=98.79  E-value=3.5e-08  Score=73.46  Aligned_cols=67  Identities=10%  Similarity=0.138  Sum_probs=58.3

Q ss_pred             HHHHHHHHhhc-CCCCC-cccHHHHHHHHHh----hccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         334 KEVVDAFKAAD-TTKSG-KLSFPDFLKVMHT----HSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       334 ~~~~~~f~~~D-~d~~g-~i~~~ef~~~~~~----~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      ..++++|+.|| .|++| .|+.+|++.++..    ..+....+++++.+++.+|.|++|.|+++||..++..+
T Consensus         8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~   80 (88)
T cd05027           8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV   80 (88)
T ss_pred             HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence            46889999998 79999 5999999999998    33455567789999999999999999999999988764

S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.76  E-value=5.3e-09  Score=72.59  Aligned_cols=59  Identities=32%  Similarity=0.410  Sum_probs=53.8

Q ss_pred             CCCcEEEccCCcCCCCCCch-hhhcCCCCCEEEccCCCCCccc-hhhcCCCCCCEEEccCCcC
Q psy2947         104 TNLRVLCLTDNCLQNASIPF-TLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGNHN  164 (441)
Q Consensus       104 ~~L~~L~l~~n~l~~~~~p~-~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~N~~  164 (441)
                      ++|++|++++|+++  .+|. .+..+++|++|++++|.++.+| ..|.++++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~--~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLT--EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTES--EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCC--ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            57899999999998  7875 6699999999999999999997 6889999999999999984

...

>KOG4251|consensus

Probab=98.74  E-value=6.1e-08  Score=82.69  Aligned_cols=167  Identities=14%  Similarity=0.186  Sum_probs=104.6

Q ss_pred             chHHHHHhhhcccc--CCCccCHHHHHHHHHHc-C------CCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCC---
Q psy2947         264 PYLEFRECFFLFAR--NGTIKTLDELSVIMRSL-G------MSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAED---  331 (441)
Q Consensus       264 ~~~~l~~~f~~~d~--~G~i~~~~el~~~~~~~-~------~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~---  331 (441)
                      ..+.+..+|+..|.  ||.| +..|+++.+..- .      ...+...+..++.++||+|+++||..-+....+...   
T Consensus        99 srrklmviFsKvDVNtDrki-sAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghsekev  177 (362)
T KOG4251|consen   99 SRRKLMVIFSKVDVNTDRKI-SAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEV  177 (362)
T ss_pred             HHHHHHHHHhhcccCccccc-cHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHHH
Confidence            45677788888885  4888 778886665432 1      111222233344578899999998765442221100   


Q ss_pred             --------------------------------------------------------CHHHHHHHHHhhcCCCCCcccHHH
Q psy2947         332 --------------------------------------------------------IPKEVVDAFKAADTTKSGKLSFPD  355 (441)
Q Consensus       332 --------------------------------------------------------~~~~~~~~f~~~D~d~~g~i~~~e  355 (441)
                                                                              -..-++++.+.+|+||+..++..|
T Consensus       178 adairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpe  257 (362)
T KOG4251|consen  178 ADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPE  257 (362)
T ss_pred             HHHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchh
Confidence                                                                    011156667778888888888888


Q ss_pred             HHHHHHh----hccCCCCh----HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHH
Q psy2947         356 FLKVMHT----HSKAEDIP----KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYE  427 (441)
Q Consensus       356 f~~~~~~----~~~~~~~~----~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~  427 (441)
                      |......    ++.+....    ...++.=..+|.+.||.+|++|+..++......+.-.++..++...|.+++.+++.+
T Consensus       258 FislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~dP~n~~~alne~~~~ma~~d~n~~~~Ls~e  337 (362)
T KOG4251|consen  258 FISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYVDPQNFRLALNEVNDIMALTDANNDEKLSLE  337 (362)
T ss_pred             hhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhcCchhhhhhHHHHHHHHhhhccCCCcccCHH
Confidence            8764322    21111111    122233345688888888888888887666666667777788888888888888888


Q ss_pred             HHHH
Q psy2947         428 DFVK  431 (441)
Q Consensus       428 ef~~  431 (441)
                      |..+
T Consensus       338 ell~  341 (362)
T KOG4251|consen  338 ELLE  341 (362)
T ss_pred             HHHH
Confidence            8765

>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6

Probab=98.71  E-value=9e-08  Score=71.27  Aligned_cols=67  Identities=13%  Similarity=0.103  Sum_probs=57.8

Q ss_pred             HHHHHHHHhhcC-CC-CCcccHHHHHHHHHhh--ccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         334 KEVVDAFKAADT-TK-SGKLSFPDFLKVMHTH--SKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       334 ~~~~~~f~~~D~-d~-~g~i~~~ef~~~~~~~--~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      ..+..+|+.||. |+ +|+|+.+||+.++...  .+.....+++.++|+.+|.|++|.|+++||..++..+
T Consensus        10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l   80 (88)
T cd05029          10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL   80 (88)
T ss_pred             HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence            457889999998 77 8999999999999742  3455678899999999999999999999999998765

S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact

>PF14658 EF-hand_9: EF-hand domain

Probab=98.68  E-value=8.1e-08  Score=65.56  Aligned_cols=63  Identities=25%  Similarity=0.335  Sum_probs=57.3

Q ss_pred             HHHHHhCCCCCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHHhCCCCC-CceeHHHHHHHHhccC
Q psy2947         375 DAFKAADTTKSGTVPAKYLKHVLVNWGE-GLSSKEVDQIFREANVTMN-SKVRYEDFVKIACAPV  437 (441)
Q Consensus       375 ~~f~~~D~~~~G~is~~ef~~~l~~~~~-~l~~~~~~~l~~~~d~d~d-g~i~~~ef~~~l~~~~  437 (441)
                      .+|+.||+++.|.|...+++.+|++++. ..++.+++.+...+|.++. |.|+++.|...|...+
T Consensus         2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~wi   66 (66)
T PF14658_consen    2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRDWI   66 (66)
T ss_pred             cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHHhC
Confidence            4799999999999999999999999987 7889999999999999887 9999999999998653

>KOG0377|consensus

Probab=98.67  E-value=3.8e-07  Score=84.44  Aligned_cols=129  Identities=19%  Similarity=0.298  Sum_probs=86.1

Q ss_pred             HHHHHHHhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHH-HhhcCCCCCcccHHHHHHHHHhhcc----CCCC-------
Q psy2947         302 ELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAF-KAADTTKSGKLSFPDFLKVMHTHSK----AEDI-------  369 (441)
Q Consensus       302 ~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f-~~~D~d~~g~i~~~ef~~~~~~~~~----~~~~-------  369 (441)
                      ++..++.++.|.|+...+...+....+-..+   |+.+- +....+.+|.+.+.+..+.+.....    +...       
T Consensus       469 eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LP---Wr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetLYr~  545 (631)
T KOG0377|consen  469 EFRKYDPKKSGKLSISHWAKCMENITGLNLP---WRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETLYRN  545 (631)
T ss_pred             HHHhcChhhcCeeeHHHHHHHHHHHhcCCCc---HHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHHHhc
Confidence            4444555667777777777766655443221   22211 1223344556665555443322110    0000       


Q ss_pred             hHHHHHHHHHhCCCCCCcccHHHHHHHHHHh----CCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy2947         370 PKEVVDAFKAADTTKSGTVPAKYLKHVLVNW----GEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA  433 (441)
Q Consensus       370 ~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~----~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l  433 (441)
                      ...++.+|...|+|++|.|+.+||+++++-+    ..+++++++.++-+.+|-++||.|++.||+++.
T Consensus       546 ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAF  613 (631)
T KOG0377|consen  546 KSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAF  613 (631)
T ss_pred             hhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHH
Confidence            1256789999999999999999999999753    467899999999999999999999999999876

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.66  E-value=8.1e-09  Score=97.82  Aligned_cols=104  Identities=25%  Similarity=0.228  Sum_probs=53.2

Q ss_pred             CCcccEEeccCCCcC----cccCCC---CCCCEEEccCCCCC-----cCCcCccCC-CCCcEEEccCCcCCCCC----Cc
Q psy2947          60 FSHAFLLSLSYTPIG----RRIFKC---DTVEVLSLKSNSLT-----SLPPDIGRL-TNLRVLCLTDNCLQNAS----IP  122 (441)
Q Consensus        60 l~~L~~l~l~~n~i~----~~~~~l---~~L~~L~l~~n~l~-----~lp~~~~~l-~~L~~L~l~~n~l~~~~----~p  122 (441)
                      +++|+.|++++|.+.    ..+..+   ++|+.|++++|+++     .+...+..+ ++|+.|++++|.++ +.    ++
T Consensus        80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~-~~~~~~~~  158 (319)
T cd00116          80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE-GASCEALA  158 (319)
T ss_pred             cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC-chHHHHHH
Confidence            446666666666432    122222   23666666666655     122234444 56666666666655 21    12


Q ss_pred             hhhhcCCCCCEEEccCCCCC-----ccchhhcCCCCCCEEEccCCcC
Q psy2947         123 FTLTFCKNLTHLYLDNNLLD-----ALPGFLLSMPQLDTVYRHGNHN  164 (441)
Q Consensus       123 ~~~~~l~~L~~L~l~~n~l~-----~lp~~~~~l~~L~~L~l~~N~~  164 (441)
                      ..+..+++|++|++++|.++     .++..+..+++|+.|++++|.+
T Consensus       159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i  205 (319)
T cd00116         159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL  205 (319)
T ss_pred             HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc
Confidence            23344455666666666664     2233344445666666666654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP)

Probab=98.65  E-value=1.1e-07  Score=74.26  Aligned_cols=60  Identities=10%  Similarity=0.176  Sum_probs=43.6

Q ss_pred             HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         371 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       371 ~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      ..+..+|..+|.|+||.|+.+|+..++  ++  ..+..+..+|..+|.|+||.||++||..++.
T Consensus        48 ~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~--~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~  107 (116)
T cd00252          48 DPVGWMFNQLDGNYDGKLSHHELAPIR--LD--PNEHCIKPFFESCDLDKDGSISLDEWCYCFI  107 (116)
T ss_pred             HHHHHHHHHHCCCCCCcCCHHHHHHHH--cc--chHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence            456677888888888888888887765  22  3356667788888888888888888877773

SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.

>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10

Probab=98.64  E-value=7.7e-08  Score=73.13  Aligned_cols=69  Identities=17%  Similarity=0.220  Sum_probs=58.1

Q ss_pred             HHHHHHHHHhhcC-CC-CCcccHHHHHHHHHhhc----cCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhC
Q psy2947         333 PKEVVDAFKAADT-TK-SGKLSFPDFLKVMHTHS----KAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWG  401 (441)
Q Consensus       333 ~~~~~~~f~~~D~-d~-~g~i~~~ef~~~~~~~~----~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~  401 (441)
                      ...++.+|+.||. |+ +|.|+.+|++.++....    ......+.++.+|+.+|.+++|.|+++||.+++...+
T Consensus         7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~   81 (94)
T cd05031           7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLS   81 (94)
T ss_pred             HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence            3568899999997 97 79999999999987521    2344567899999999999999999999999998754

S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.

>KOG4579|consensus

Probab=98.64  E-value=4.2e-09  Score=82.67  Aligned_cols=101  Identities=24%  Similarity=0.280  Sum_probs=65.2

Q ss_pred             cccEEeccCCC---cCcc---cCCCCCCCEEEccCCCCCcCCcCccCC-CCCcEEEccCCcCCCCCCchhhhcCCCCCEE
Q psy2947          62 HAFLLSLSYTP---IGRR---IFKCDTVEVLSLKSNSLTSLPPDIGRL-TNLRVLCLTDNCLQNASIPFTLTFCKNLTHL  134 (441)
Q Consensus        62 ~L~~l~l~~n~---i~~~---~~~l~~L~~L~l~~n~l~~lp~~~~~l-~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L  134 (441)
                      .+..++|++++   |+..   +....+|+..+|++|.+..+|+.|... +.++.|++++|.|+  .+|..+..++.|+.|
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis--dvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS--DVPEELAAMPALRSL  105 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh--hchHHHhhhHHhhhc
Confidence            34556666663   3322   334456666677777777777665443 46677777777776  677777777777777


Q ss_pred             EccCCCCCccchhhcCCCCCCEEEccCCcC
Q psy2947         135 YLDNNLLDALPGFLLSMPQLDTVYRHGNHN  164 (441)
Q Consensus       135 ~l~~n~l~~lp~~~~~l~~L~~L~l~~N~~  164 (441)
                      +++.|.|...|..+..+.+|..|+..+|.+
T Consensus       106 Nl~~N~l~~~p~vi~~L~~l~~Lds~~na~  135 (177)
T KOG4579|consen  106 NLRFNPLNAEPRVIAPLIKLDMLDSPENAR  135 (177)
T ss_pred             ccccCccccchHHHHHHHhHHHhcCCCCcc
Confidence            777777777776666666666666666663

>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12

Probab=98.63  E-value=1.1e-07  Score=71.08  Aligned_cols=65  Identities=17%  Similarity=0.380  Sum_probs=52.3

Q ss_pred             HHHHHHHHhCCC--CCCcccHHHHHHHHH-HhCCCCC----HHHHHHHHHHhCCCCCCceeHHHHHHHHhcc
Q psy2947         372 EVVDAFKAADTT--KSGTVPAKYLKHVLV-NWGEGLS----SKEVDQIFREANVTMNSKVRYEDFVKIACAP  436 (441)
Q Consensus       372 ~~~~~f~~~D~~--~~G~is~~ef~~~l~-~~~~~l~----~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~~  436 (441)
                      .+..+|+.++..  ++|.|+.+||+.+|. .++..++    +++++.+|+.+|.+++|.|+|+||+.++...
T Consensus         9 ~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~   80 (88)
T cd05030           9 TIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV   80 (88)
T ss_pred             HHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence            456678888755  478999999999996 4555566    8889999999999999999999999887643

Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.

>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1

Probab=98.62  E-value=2.3e-07  Score=70.25  Aligned_cols=68  Identities=19%  Similarity=0.238  Sum_probs=57.4

Q ss_pred             HHHHHHHHHhhc-CCCCC-cccHHHHHHHHHh-hc---cCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         333 PKEVVDAFKAAD-TTKSG-KLSFPDFLKVMHT-HS---KAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       333 ~~~~~~~f~~~D-~d~~g-~i~~~ef~~~~~~-~~---~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      .+.++++|+.|| .+++| .|+..|++.++.. +.   ......+.++.+|+.+|.+++|.|+++||..++..+
T Consensus         8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~   81 (92)
T cd05025           8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL   81 (92)
T ss_pred             HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence            367899999997 99999 5999999999975 31   122356789999999999999999999999998764

S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.

>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction

Probab=98.59  E-value=2e-07  Score=65.96  Aligned_cols=61  Identities=15%  Similarity=0.135  Sum_probs=53.7

Q ss_pred             HHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         337 VDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       337 ~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      +++|+.+|.|++|.|+.+|+..++....   ...+.++.+|+.+|.+++|.|+++||..++..+
T Consensus         2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g---~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~   62 (67)
T cd00052           2 DQIFRSLDPDGDGLISGDEARPFLGKSG---LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI   62 (67)
T ss_pred             hHHHHHhCCCCCCcCcHHHHHHHHHHcC---CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence            5689999999999999999999987752   256789999999999999999999999998653

The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.

>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11

Probab=98.59  E-value=3.1e-07  Score=68.50  Aligned_cols=67  Identities=19%  Similarity=0.296  Sum_probs=56.3

Q ss_pred             HHHHHHHHh-hcCCCCC-cccHHHHHHHHHhhc----cCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         334 KEVVDAFKA-ADTTKSG-KLSFPDFLKVMHTHS----KAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       334 ~~~~~~f~~-~D~d~~g-~i~~~ef~~~~~~~~----~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      ..+..+|+. +|.+++| +|+.+||+.++....    ........+..+++.+|.|+||.|+++||.+++..+
T Consensus         9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l   81 (89)
T cd05023           9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL   81 (89)
T ss_pred             HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence            567888999 7788876 999999999998753    233345789999999999999999999999998765

S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S

>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP)

Probab=98.57  E-value=2.6e-07  Score=72.28  Aligned_cols=61  Identities=18%  Similarity=0.214  Sum_probs=52.8

Q ss_pred             HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy2947         333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLV  398 (441)
Q Consensus       333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~  398 (441)
                      ...+..+|..+|.|+||.|+.+|+..+.  +   ...+..+..+|+.+|.|+||.||++||...+.
T Consensus        47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l---~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~  107 (116)
T cd00252          47 KDPVGWMFNQLDGNYDGKLSHHELAPIR--L---DPNEHCIKPFFESCDLDKDGSISLDEWCYCFI  107 (116)
T ss_pred             HHHHHHHHHHHCCCCCCcCCHHHHHHHH--c---cchHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence            4678999999999999999999999876  2   12256778899999999999999999999983

SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.57  E-value=1.2e-08  Score=96.56  Aligned_cols=105  Identities=25%  Similarity=0.173  Sum_probs=59.7

Q ss_pred             CCcccEEeccCCCcC----------cccCCCCCCCEEEccCCCCC-cCCcCccCCCC---CcEEEccCCcCCCC---CCc
Q psy2947          60 FSHAFLLSLSYTPIG----------RRIFKCDTVEVLSLKSNSLT-SLPPDIGRLTN---LRVLCLTDNCLQNA---SIP  122 (441)
Q Consensus        60 l~~L~~l~l~~n~i~----------~~~~~l~~L~~L~l~~n~l~-~lp~~~~~l~~---L~~L~l~~n~l~~~---~~p  122 (441)
                      .++|+.++++++.+.          ..+..+++|+.|++++|.+. ..+..+..+.+   |++|++++|.+...   .+.
T Consensus        50 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~  129 (319)
T cd00116          50 QPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLA  129 (319)
T ss_pred             CCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHH
Confidence            445666666666443          23445667777777777665 33333433433   77777777766410   112


Q ss_pred             hhhhcC-CCCCEEEccCCCCC-----ccchhhcCCCCCCEEEccCCcC
Q psy2947         123 FTLTFC-KNLTHLYLDNNLLD-----ALPGFLLSMPQLDTVYRHGNHN  164 (441)
Q Consensus       123 ~~~~~l-~~L~~L~l~~n~l~-----~lp~~~~~l~~L~~L~l~~N~~  164 (441)
                      ..+..+ ++|+.|++++|.++     .++..+..+++|+.|++++|.+
T Consensus       130 ~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l  177 (319)
T cd00116         130 KGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI  177 (319)
T ss_pred             HHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCC
Confidence            233444 66777777777765     2334455566677777777664

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0031|consensus

Probab=98.57  E-value=1.4e-06  Score=69.29  Aligned_cols=99  Identities=13%  Similarity=0.166  Sum_probs=83.6

Q ss_pred             HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH-hCCCCCHHHHHH
Q psy2947         333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN-WGEGLSSKEVDQ  411 (441)
Q Consensus       333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~-~~~~l~~~~~~~  411 (441)
                      .++++++|..+|+|+||.|++++++.++..+... ..++++.+|++..    .|-|++.-|-.++-. +...-+++.+-.
T Consensus        31 IqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~-~~d~elDaM~~Ea----~gPINft~FLTmfGekL~gtdpe~~I~~  105 (171)
T KOG0031|consen   31 IQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKI-ASDEELDAMMKEA----PGPINFTVFLTMFGEKLNGTDPEEVILN  105 (171)
T ss_pred             HHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHhC----CCCeeHHHHHHHHHHHhcCCCHHHHHHH
Confidence            4678999999999999999999999999888444 6688999999654    789999998888865 333345788999


Q ss_pred             HHHHhCCCCCCceeHHHHHHHHhcc
Q psy2947         412 IFREANVTMNSKVRYEDFVKIACAP  436 (441)
Q Consensus       412 l~~~~d~d~dg~i~~~ef~~~l~~~  436 (441)
                      .|+.+|.++.|.|..+.+.++|...
T Consensus       106 AF~~FD~~~~G~I~~d~lre~Ltt~  130 (171)
T KOG0031|consen  106 AFKTFDDEGSGKIDEDYLRELLTTM  130 (171)
T ss_pred             HHHhcCccCCCccCHHHHHHHHHHh
Confidence            9999999999999999998888653

>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif

Probab=98.56  E-value=2.9e-07  Score=69.07  Aligned_cols=67  Identities=18%  Similarity=0.260  Sum_probs=56.9

Q ss_pred             HHHHHHHHhhcC--CCCCcccHHHHHHHHHhhccC----CCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         334 KEVVDAFKAADT--TKSGKLSFPDFLKVMHTHSKA----EDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       334 ~~~~~~f~~~D~--d~~g~i~~~ef~~~~~~~~~~----~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      +.++.+|+.||.  +++|.|+.+||..++......    ....+.++.+|..+|.+++|.|+++||..++...
T Consensus         8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~   80 (88)
T cd00213           8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL   80 (88)
T ss_pred             HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence            568889999999  899999999999998753222    1236789999999999999999999999998764

Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th

>KOG3207|consensus

Probab=98.55  E-value=1.1e-08  Score=95.14  Aligned_cols=155  Identities=17%  Similarity=0.132  Sum_probs=91.4

Q ss_pred             CCCCcccEEeccCCCcC------cccCCCCCCCEEEccCCCCCcCCcC--ccCCCCCcEEEccCCcCCCCCCchhhhcCC
Q psy2947          58 QYFSHAFLLSLSYTPIG------RRIFKCDTVEVLSLKSNSLTSLPPD--IGRLTNLRVLCLTDNCLQNASIPFTLTFCK  129 (441)
Q Consensus        58 ~~l~~L~~l~l~~n~i~------~~~~~l~~L~~L~l~~n~l~~lp~~--~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~  129 (441)
                      +.+++++.||||.|-+.      .....+++|+.|+|+.|++...-.+  -..+++|+.|.|+.|.+++..+-..+..++
T Consensus       143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP  222 (505)
T KOG3207|consen  143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP  222 (505)
T ss_pred             hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence            34677788888877332      3344677888888888877622221  224677788888888776333333446677


Q ss_pred             CCCEEEccCCC-CCccchhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-Hhhccccc--CCch---
Q psy2947         130 NLTHLYLDNNL-LDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLH--QPSR---  202 (441)
Q Consensus       130 ~L~~L~l~~n~-l~~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~--~p~~---  202 (441)
                      +|..|+|..|. +..--....-+..|+.|+|++|++.....+        ..+..++.+..+ +..+.+..  .|+.   
T Consensus       223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~--------~~~~~l~~L~~Lnls~tgi~si~~~d~~s~  294 (505)
T KOG3207|consen  223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQG--------YKVGTLPGLNQLNLSSTGIASIAEPDVESL  294 (505)
T ss_pred             cHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccc--------cccccccchhhhhccccCcchhcCCCccch
Confidence            88888888774 221112223456778888888886444321        234444555555 44444322  3332   


Q ss_pred             --hhhhhhhcccccccccCC
Q psy2947         203 --LQDLAVQSVIASKENFFE  220 (441)
Q Consensus       203 --l~~l~~l~~l~l~~n~~~  220 (441)
                        ...++.|+.|+++.|+..
T Consensus       295 ~kt~~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  295 DKTHTFPKLEYLNISENNIR  314 (505)
T ss_pred             hhhcccccceeeecccCccc
Confidence              456677888888877653

>smart00027 EH Eps15 homology domain

Probab=98.55  E-value=4.5e-07  Score=69.22  Aligned_cols=63  Identities=10%  Similarity=0.132  Sum_probs=56.4

Q ss_pred             HHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       334 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      ..++.+|+.+|.|++|.|+.+|+..++...   ....++++.+|..+|.+++|.|+++||..++..
T Consensus        10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~---~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~   72 (96)
T smart00027       10 AKYEQIFRSLDKNQDGTVTGAQAKPILLKS---GLPQTLLAKIWNLADIDNDGELDKDEFALAMHL   72 (96)
T ss_pred             HHHHHHHHHhCCCCCCeEeHHHHHHHHHHc---CCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            568889999999999999999999999874   244678999999999999999999999999875

Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.

>KOG0030|consensus

Probab=98.54  E-value=1.1e-06  Score=68.71  Aligned_cols=104  Identities=13%  Similarity=0.103  Sum_probs=89.3

Q ss_pred             CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCC--CCCcccHHHHHHHHHHhC---CCCC
Q psy2947         331 DIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTT--KSGTVPAKYLKHVLVNWG---EGLS  405 (441)
Q Consensus       331 ~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~--~~G~is~~ef~~~l~~~~---~~l~  405 (441)
                      ...++++++|..||..+||.|+..+.-..++.+ +..++..++......++++  +--.|++|+|.-++..++   ...+
T Consensus         8 d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRal-G~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t   86 (152)
T KOG0030|consen    8 DQMEEFKEAFLLFDRTGDGKISGSQVGDVLRAL-GQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGT   86 (152)
T ss_pred             chHHHHHHHHHHHhccCcccccHHHHHHHHHHh-cCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCc
Confidence            445889999999999999999999999999887 5667778888888888777  457999999999988764   4567


Q ss_pred             HHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         406 SKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       406 ~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      .++.-+-++.+|++++|.|.+.|+.+.+..
T Consensus        87 ~edfvegLrvFDkeg~G~i~~aeLRhvLtt  116 (152)
T KOG0030|consen   87 YEDFVEGLRVFDKEGNGTIMGAELRHVLTT  116 (152)
T ss_pred             HHHHHHHHHhhcccCCcceeHHHHHHHHHH
Confidence            788889999999999999999999888753

>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A

Probab=98.50  E-value=4.2e-07  Score=61.21  Aligned_cols=51  Identities=18%  Similarity=0.259  Sum_probs=33.6

Q ss_pred             CCcccHHHHHHHHHhhccCC-CChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         348 SGKLSFPDFLKVMHTHSKAE-DIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       348 ~g~i~~~ef~~~~~~~~~~~-~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      +|.|+.++|+.++... +.. ..++++..+|..+|.+++|.|+++||..++..
T Consensus         2 ~G~i~~~~~~~~l~~~-g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~   53 (54)
T PF13833_consen    2 DGKITREEFRRALSKL-GIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR   53 (54)
T ss_dssp             SSEEEHHHHHHHHHHT-TSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred             cCEECHHHHHHHHHHh-CCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence            4667777777766433 333 55666777777777777777777777777653

...

>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands

Probab=98.45  E-value=1e-06  Score=60.97  Aligned_cols=61  Identities=13%  Similarity=0.255  Sum_probs=53.5

Q ss_pred             HHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy2947         336 VVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVL  397 (441)
Q Consensus       336 ~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l  397 (441)
                      +..+|+.+|.+++|.|+++||..++... ......+.+..+|+.+|.+++|.|+++||..++
T Consensus         2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~   62 (63)
T cd00051           2 LREAFRLFDKDGDGTISADELKAALKSL-GEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM   62 (63)
T ss_pred             HHHHHHHhCCCCCCcCcHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence            5678999999999999999999999876 344556788899999999999999999998765

Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.

>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand

Probab=98.44  E-value=3e-07  Score=52.48  Aligned_cols=27  Identities=19%  Similarity=0.386  Sum_probs=15.2

Q ss_pred             HHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         373 VVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       373 ~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      ++.+|+.+|+|+||+|+++||+.+|++
T Consensus         2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~   28 (29)
T PF00036_consen    2 LKEAFREFDKDGDGKIDFEEFKEMMKK   28 (29)
T ss_dssp             HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence            445555555555555555555555543

This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....

>KOG2643|consensus

Probab=98.39  E-value=9.6e-07  Score=82.02  Aligned_cols=117  Identities=17%  Similarity=0.210  Sum_probs=63.4

Q ss_pred             CCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccC--------------CCChHHHHH
Q psy2947         310 KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKA--------------EDIPKEVVD  375 (441)
Q Consensus       310 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~--------------~~~~~~~~~  375 (441)
                      .+|.|+|.|+.-++.-...+   +...+-+|++||.||||.|+.+||..+.+....+              ......+..
T Consensus       212 ~~GLIsfSdYiFLlTlLS~p---~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~ns  288 (489)
T KOG2643|consen  212 ESGLISFSDYIFLLTLLSIP---ERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNS  288 (489)
T ss_pred             CCCeeeHHHHHHHHHHHccC---cccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhh
Confidence            56777777776666544332   3345566777777777777777776654321100              000011111


Q ss_pred             H--HHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy2947         376 A--FKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA  433 (441)
Q Consensus       376 ~--f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l  433 (441)
                      .  -.-|..+++|+++.+||.+++..+    ..+-.+--|.++|....|.|+-.+|...|
T Consensus       289 aL~~yFFG~rg~~kLs~deF~~F~e~L----q~Eil~lEF~~~~~~~~g~Ise~DFA~~l  344 (489)
T KOG2643|consen  289 ALLTYFFGKRGNGKLSIDEFLKFQENL----QEEILELEFERFDKGDSGAISEVDFAELL  344 (489)
T ss_pred             hHHHHhhccCCCccccHHHHHHHHHHH----HHHHHHHHHHHhCcccccccCHHHHHHHH
Confidence            1  223466666666666666666653    23334445556665555666666666555

>KOG0041|consensus

Probab=98.38  E-value=1.3e-06  Score=72.45  Aligned_cols=99  Identities=15%  Similarity=0.206  Sum_probs=67.2

Q ss_pred             HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh--CCCCCHHHHH
Q psy2947         333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW--GEGLSSKEVD  410 (441)
Q Consensus       333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~--~~~l~~~~~~  410 (441)
                      ...+..+|+.||.+.||+|++.|++.+|..+ +...+.--++.+++..|.|.||.||+.||--+++..  |+--.+....
T Consensus        98 Ik~~~~~Fk~yDe~rDgfIdl~ELK~mmEKL-gapQTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL~~ds~~~  176 (244)
T KOG0041|consen   98 IKDAESMFKQYDEDRDGFIDLMELKRMMEKL-GAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQEDSGLL  176 (244)
T ss_pred             HHHHHHHHHHhcccccccccHHHHHHHHHHh-CCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhccccccchHHH
Confidence            4566777888888888888888888888776 444445567888888888888888888888887763  3322333344


Q ss_pred             HHHHH--hCCCCCCceeHHHHHHH
Q psy2947         411 QIFRE--ANVTMNSKVRYEDFVKI  432 (441)
Q Consensus       411 ~l~~~--~d~d~dg~i~~~ef~~~  432 (441)
                      .+-+.  .|-...|..--..|-++
T Consensus       177 ~LAr~~eVDVskeGV~GAknFFeA  200 (244)
T KOG0041|consen  177 RLARLSEVDVSKEGVSGAKNFFEA  200 (244)
T ss_pred             HHHHhcccchhhhhhhhHHHHHHH
Confidence            44433  55555565555555553

>KOG4666|consensus

Probab=98.36  E-value=3.6e-07  Score=81.38  Aligned_cols=120  Identities=18%  Similarity=0.268  Sum_probs=99.8

Q ss_pred             hCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcc
Q psy2947         309 EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTV  388 (441)
Q Consensus       309 ~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i  388 (441)
                      .+.+.|...||...++-     +-.+.+..+|..||.+++|.+|+.|....+..+.+...+.+.++-+|+.|+.+.||++
T Consensus       239 ~kg~~igi~efa~~l~v-----pvsd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~  313 (412)
T KOG4666|consen  239 AKGPDIGIVEFAVNLRV-----PVSDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGIS  313 (412)
T ss_pred             ccCCCcceeEeeeeeec-----chhhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhccccccccc
Confidence            46677777777665541     2236788999999999999999999999888887777778899999999999999999


Q ss_pred             cHHHHHHHHHH-hCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         389 PAKYLKHVLVN-WGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       389 s~~ef~~~l~~-~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      +.++|.-+++. +|  +.+-.+-.+|+..+...+|+|+|++|.+++..
T Consensus       314 ge~~ls~ilq~~lg--v~~l~v~~lf~~i~q~d~~ki~~~~f~~fa~~  359 (412)
T KOG4666|consen  314 GEHILSLILQVVLG--VEVLRVPVLFPSIEQKDDPKIYASNFRKFAAT  359 (412)
T ss_pred             chHHHHHHHHHhcC--cceeeccccchhhhcccCcceeHHHHHHHHHh
Confidence            99999999986 34  44555667999999888999999999998753

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.35  E-value=4e-07  Score=57.97  Aligned_cols=39  Identities=33%  Similarity=0.448  Sum_probs=19.1

Q ss_pred             CCcEEEccCCcCCCCCCchhhhcCCCCCEEEccCCCCCccc
Q psy2947         105 NLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALP  145 (441)
Q Consensus       105 ~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~lp  145 (441)
                      +|++|++++|+|+  .+|..+++|++|+.|++++|+|+.+|
T Consensus         2 ~L~~L~l~~N~i~--~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    2 NLEELDLSNNQIT--DLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             T-SEEEETSSS-S--SHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             cceEEEccCCCCc--ccCchHhCCCCCCEEEecCCCCCCCc
Confidence            4455555555554  45544555555555555555555443

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.34  E-value=6.2e-07  Score=57.07  Aligned_cols=36  Identities=39%  Similarity=0.691  Sum_probs=20.8

Q ss_pred             CCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCC
Q psy2947          82 TVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQ  117 (441)
Q Consensus        82 ~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~  117 (441)
                      +|++|++++|+|+.+|+.+++|++|+.|++++|+|+
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence            456666666666666555666666666666666655

...

>KOG4579|consensus

Probab=98.34  E-value=3.4e-08  Score=77.62  Aligned_cols=127  Identities=20%  Similarity=0.178  Sum_probs=72.8

Q ss_pred             CCCEEEccCCCCCcCCcC---ccCCCCCcEEEccCCcCCCCCCchhhh-cCCCCCEEEccCCCCCccchhhcCCCCCCEE
Q psy2947          82 TVEVLSLKSNSLTSLPPD---IGRLTNLRVLCLTDNCLQNASIPFTLT-FCKNLTHLYLDNNLLDALPGFLLSMPQLDTV  157 (441)
Q Consensus        82 ~L~~L~l~~n~l~~lp~~---~~~l~~L~~L~l~~n~l~~~~~p~~~~-~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L  157 (441)
                      .+..++|+++++..+++.   +.....|...+|++|.+.  .+|..+. ..+.++.|+|++|.|+.+|..+..++.|+.|
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk--~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK--KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSL  105 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh--hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhc
Confidence            345566667666655544   445556666677777776  6666663 3346677777777777777667777777777


Q ss_pred             EccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCchhhhhhhhcccccccccCC
Q psy2947         158 YRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSRLQDLAVQSVIASKENFFE  220 (441)
Q Consensus       158 ~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~l~~l~~l~~l~l~~n~~~  220 (441)
                      +++.|++..          .|.-+..|..+..+ ..+|....+|-.+..-......++.++++.
T Consensus       106 Nl~~N~l~~----------~p~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~al~~lgnepl~  159 (177)
T KOG4579|consen  106 NLRFNPLNA----------EPRVIAPLIKLDMLDSPENARAEIDVDLFYSSLPALIKLGNEPLG  159 (177)
T ss_pred             ccccCcccc----------chHHHHHHHhHHHhcCCCCccccCcHHHhccccHHHHHhcCCccc
Confidence            777777522          23344444444444 444555555544433333333444545544

>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12

Probab=98.32  E-value=2.5e-06  Score=63.69  Aligned_cols=67  Identities=12%  Similarity=0.211  Sum_probs=55.1

Q ss_pred             HHHHHHHHhhcCC--CCCcccHHHHHHHHHhhccCCCC----hHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         334 KEVVDAFKAADTT--KSGKLSFPDFLKVMHTHSKAEDI----PKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       334 ~~~~~~f~~~D~d--~~g~i~~~ef~~~~~~~~~~~~~----~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      ..+..+|+.|+..  .+|.|+.+||+.++.........    .+.+..+|+.+|.+++|.|+++||..++...
T Consensus         8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~   80 (88)
T cd05030           8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV   80 (88)
T ss_pred             HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence            4577889999866  47999999999999744333233    6789999999999999999999999998764

Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.

>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand

Probab=98.31  E-value=8.7e-07  Score=50.57  Aligned_cols=28  Identities=32%  Similarity=0.660  Sum_probs=25.6

Q ss_pred             HHHHHHHhhcCCCCCcccHHHHHHHHHh
Q psy2947         335 EVVDAFKAADTTKSGKLSFPDFLKVMHT  362 (441)
Q Consensus       335 ~~~~~f~~~D~d~~g~i~~~ef~~~~~~  362 (441)
                      +++++|+.||.|+||+|+++||+.++..
T Consensus         1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~   28 (29)
T PF00036_consen    1 ELKEAFREFDKDGDGKIDFEEFKEMMKK   28 (29)
T ss_dssp             HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred             CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence            4788999999999999999999998875

This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....

>KOG3207|consensus

Probab=98.31  E-value=1e-07  Score=88.90  Aligned_cols=159  Identities=18%  Similarity=0.145  Sum_probs=110.8

Q ss_pred             CCCcccEEeccCCCcC-----cccCCCCCCCEEEccCCCCCcC---CcCccCCCCCcEEEccCCcCCCCCCchh-hhcCC
Q psy2947          59 YFSHAFLLSLSYTPIG-----RRIFKCDTVEVLSLKSNSLTSL---PPDIGRLTNLRVLCLTDNCLQNASIPFT-LTFCK  129 (441)
Q Consensus        59 ~l~~L~~l~l~~n~i~-----~~~~~l~~L~~L~l~~n~l~~l---p~~~~~l~~L~~L~l~~n~l~~~~~p~~-~~~l~  129 (441)
                      .+..|+.+.|.+..+.     .....|++++.|+||.|-++.+   -.-...|++|+.|+++.|++. -...+. -..++
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~-~~~~s~~~~~l~  197 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLS-NFISSNTTLLLS  197 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccccc-CCccccchhhhh
Confidence            5778888888887432     2456789999999999988833   223667899999999999987 222222 25678


Q ss_pred             CCCEEEccCCCCC--ccchhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCC--chhh
Q psy2947         130 NLTHLYLDNNLLD--ALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQP--SRLQ  204 (441)
Q Consensus       130 ~L~~L~l~~n~l~--~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p--~~l~  204 (441)
                      +|+.|.|+.|+|+  .+-..+..+|+|+.|+|..|.......         .....++.++.+ +.+|.+...+  ...+
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~---------~~~~i~~~L~~LdLs~N~li~~~~~~~~~  268 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKA---------TSTKILQTLQELDLSNNNLIDFDQGYKVG  268 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceec---------chhhhhhHHhhccccCCcccccccccccc
Confidence            8999999999996  444556678999999999995222111         122234455556 7777776666  5778


Q ss_pred             hhhhhcccccccccCCCCCCCch
Q psy2947         205 DLAVQSVIASKENFFEPGLFPGP  227 (441)
Q Consensus       205 ~l~~l~~l~l~~n~~~~~~~p~~  227 (441)
                      .|+.|..|+++.+.+..-.+|..
T Consensus       269 ~l~~L~~Lnls~tgi~si~~~d~  291 (505)
T KOG3207|consen  269 TLPGLNQLNLSSTGIASIAEPDV  291 (505)
T ss_pred             cccchhhhhccccCcchhcCCCc
Confidence            88899999888876665444443

>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10

Probab=98.30  E-value=4.7e-06  Score=61.41  Aligned_cols=60  Identities=13%  Similarity=0.260  Sum_probs=34.0

Q ss_pred             HHHHHHHhCCCCCCcccHHHHHHHHHH-----hCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy2947         373 VVDAFKAADTTKSGTVPAKYLKHVLVN-----WGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA  433 (441)
Q Consensus       373 ~~~~f~~~D~~~~G~is~~ef~~~l~~-----~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l  433 (441)
                      +..+|+.|- .+.+.++..||+.++..     ++..-..+.++.+++.+|.|+||.|+|.||+..+
T Consensus        10 lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv   74 (91)
T cd05024          10 MMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLI   74 (91)
T ss_pred             HHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence            344555554 33446666666666643     1223345556666666666666666666666654

S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.

>KOG1859|consensus

Probab=98.30  E-value=2.3e-08  Score=98.52  Aligned_cols=83  Identities=30%  Similarity=0.386  Sum_probs=36.3

Q ss_pred             ccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchh-hhcCCCCCEEEccCCCCCccchhhcCCCCC
Q psy2947          76 RIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFT-LTFCKNLTHLYLDNNLLDALPGFLLSMPQL  154 (441)
Q Consensus        76 ~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~-~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L  154 (441)
                      ++.-++.|+.|+|++|+++.+. .+..+++|++|||++|.++  .+|.- ..++. |..|.+++|-++.+- .+.++.+|
T Consensus       182 SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~--~vp~l~~~gc~-L~~L~lrnN~l~tL~-gie~LksL  256 (1096)
T KOG1859|consen  182 SLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLR--HVPQLSMVGCK-LQLLNLRNNALTTLR-GIENLKSL  256 (1096)
T ss_pred             HHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhc--cccccchhhhh-heeeeecccHHHhhh-hHHhhhhh
Confidence            3333444455555555544332 3444445555555555544  44431 11222 444444444444442 23344444


Q ss_pred             CEEEccCCc
Q psy2947         155 DTVYRHGNH  163 (441)
Q Consensus       155 ~~L~l~~N~  163 (441)
                      +.|++++|-
T Consensus       257 ~~LDlsyNl  265 (1096)
T KOG1859|consen  257 YGLDLSYNL  265 (1096)
T ss_pred             hccchhHhh
Confidence            444444444

>KOG0531|consensus

Probab=98.29  E-value=3.3e-07  Score=89.98  Aligned_cols=104  Identities=25%  Similarity=0.208  Sum_probs=59.6

Q ss_pred             CCcccEEeccCCCcC---cccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEc
Q psy2947          60 FSHAFLLSLSYTPIG---RRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL  136 (441)
Q Consensus        60 l~~L~~l~l~~n~i~---~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l  136 (441)
                      +++|..|++..|.|.   ..+..+++|++|++++|.|+.+. ++..++.|+.|++++|.|+  .++ .+..+.+|+.+++
T Consensus        94 ~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~--~~~-~~~~l~~L~~l~l  169 (414)
T KOG0531|consen   94 LKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLIS--DIS-GLESLKSLKLLDL  169 (414)
T ss_pred             ccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCcch--hcc-CCccchhhhcccC
Confidence            556666666666443   21445666666666666666543 3445555666666666665  333 3444666666666


Q ss_pred             cCCCCCccchh-hcCCCCCCEEEccCCcCccC
Q psy2947         137 DNNLLDALPGF-LLSMPQLDTVYRHGNHNYFK  167 (441)
Q Consensus       137 ~~n~l~~lp~~-~~~l~~L~~L~l~~N~~~~~  167 (441)
                      ++|.+..+... ...+.+|+.+++.+|.+...
T Consensus       170 ~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i  201 (414)
T KOG0531|consen  170 SYNRIVDIENDELSELISLEELDLGGNSIREI  201 (414)
T ss_pred             CcchhhhhhhhhhhhccchHHHhccCCchhcc
Confidence            66666655542 34556666666666665443

>KOG1859|consensus

Probab=98.27  E-value=5e-08  Score=96.26  Aligned_cols=125  Identities=19%  Similarity=0.143  Sum_probs=97.5

Q ss_pred             CCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEccCCCCCccch-hhcCCCCCCEEEcc
Q psy2947          82 TVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPG-FLLSMPQLDTVYRH  160 (441)
Q Consensus        82 ~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~l~  160 (441)
                      .|...+.++|++..+..++.-++.|+.|+|++|+++  ... .+..++.|++|||++|.+..+|. ...++. |..|.++
T Consensus       165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~--~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr  240 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFT--KVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR  240 (1096)
T ss_pred             hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhh--hhH-HHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence            467778888999988888888999999999999998  554 78899999999999999999983 233444 9999999


Q ss_pred             CCcCccCcccccccccccccccccchhHHH-HhhcccccCC--chhhhhhhhcccccccccCCC
Q psy2947         161 GNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQP--SRLQDLAVQSVIASKENFFEP  221 (441)
Q Consensus       161 ~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p--~~l~~l~~l~~l~l~~n~~~~  221 (441)
                      +|-+...           ..+.+|..+..+ +.+|.+....  .-|..|..|..|.+.+||+-+
T Consensus       241 nN~l~tL-----------~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  241 NNALTTL-----------RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             ccHHHhh-----------hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            9996442           235555555555 6666653322  357888999999999999876

>KOG4251|consensus

Probab=98.25  E-value=1.2e-06  Score=74.96  Aligned_cols=131  Identities=13%  Similarity=0.173  Sum_probs=89.4

Q ss_pred             HhCCCcccHHHHHHHHHhhcCC--CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccC-------------CCChHH
Q psy2947         308 AEKGGKLSFPDFLKVMHTHSKA--EDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKA-------------EDIPKE  372 (441)
Q Consensus       308 ~~~~g~i~~~ef~~~~~~~~~~--~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~-------------~~~~~~  372 (441)
                      .+.||+|+..|..+.+......  ..+.++-+.-|+..|+|++|.|+++||+.-+....+.             ....++
T Consensus       112 VNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghsekevadairlneelkVDe  191 (362)
T KOG4251|consen  112 VNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEVADAIRLNEELKVDE  191 (362)
T ss_pred             cCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHHHHHHhhccCcccccH
Confidence            5678999999998887755332  1223455667999999999999999998644332111             111122


Q ss_pred             HHHHHHHhCCCCCCcccH---------HHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhccCC
Q psy2947         373 VVDAFKAADTTKSGTVPA---------KYLKHVLVNW-GEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAPVP  438 (441)
Q Consensus       373 ~~~~f~~~D~~~~G~is~---------~ef~~~l~~~-~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~~~~  438 (441)
                      -..+|-.-++++.|..+.         +||..++..- ...+-..-++.+++.+|+|+|.+++..||+.....++.
T Consensus       192 EtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFislpvGTVe  267 (362)
T KOG4251|consen  192 ETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFISLPVGTVE  267 (362)
T ss_pred             HHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhhhcCCCcchh
Confidence            334566666666666555         9998888642 11233455788999999999999999999987655543

>PF14658 EF-hand_9: EF-hand domain

Probab=98.20  E-value=7.1e-06  Score=56.13  Aligned_cols=61  Identities=21%  Similarity=0.352  Sum_probs=56.0

Q ss_pred             HHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCC-CcccHHHHHHHHHH
Q psy2947         339 AFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKS-GTVPAKYLKHVLVN  399 (441)
Q Consensus       339 ~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~-G~is~~ef~~~l~~  399 (441)
                      +|..+|.++.|.|...+++.+++........+.+++.+.+.+|+++. |.|+++.|..+|+.
T Consensus         3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~   64 (66)
T PF14658_consen    3 AFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD   64 (66)
T ss_pred             chhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence            68899999999999999999999986657778899999999999998 99999999999975

>KOG0531|consensus

Probab=98.17  E-value=7.5e-07  Score=87.44  Aligned_cols=105  Identities=25%  Similarity=0.265  Sum_probs=86.5

Q ss_pred             CCcccEEeccCCCcCc---ccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEc
Q psy2947          60 FSHAFLLSLSYTPIGR---RIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL  136 (441)
Q Consensus        60 l~~L~~l~l~~n~i~~---~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l  136 (441)
                      +..++.+++..|.|..   .+..+++|+.|++..|+|..+...+..+.+|+.|++++|.|+  .+. .+..++.|+.|++
T Consensus        71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~--~i~-~l~~l~~L~~L~l  147 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKIT--KLE-GLSTLTLLKELNL  147 (414)
T ss_pred             hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccc--ccc-chhhccchhhhee
Confidence            5677777788886643   367889999999999999988766888999999999999998  554 4777888999999


Q ss_pred             cCCCCCccchhhcCCCCCCEEEccCCcCccCc
Q psy2947         137 DNNLLDALPGFLLSMPQLDTVYRHGNHNYFKS  168 (441)
Q Consensus       137 ~~n~l~~lp~~~~~l~~L~~L~l~~N~~~~~~  168 (441)
                      ++|.|..++. +..++.|+.+++++|++....
T Consensus       148 ~~N~i~~~~~-~~~l~~L~~l~l~~n~i~~ie  178 (414)
T KOG0531|consen  148 SGNLISDISG-LESLKSLKLLDLSYNRIVDIE  178 (414)
T ss_pred             ccCcchhccC-CccchhhhcccCCcchhhhhh
Confidence            9999998864 445889999999999975544

>KOG0751|consensus

Probab=98.17  E-value=1.5e-05  Score=75.18  Aligned_cols=98  Identities=22%  Similarity=0.315  Sum_probs=67.2

Q ss_pred             ccchHHHHHhhhccc---cCC--CccCHHHH-HHHHHHcCCCcCHHHHHHHHH-----hCCCcccHHHHHHHHHhhcCCC
Q psy2947         262 KTPYLEFRECFFLFA---RNG--TIKTLDEL-SVIMRSLGMSPTIAELKKYLA-----EKGGKLSFPDFLKVMHTHSKAE  330 (441)
Q Consensus       262 ~~~~~~l~~~f~~~d---~~G--~i~~~~el-~~~~~~~~~~~~~~~~~~~~~-----~~~g~i~~~ef~~~~~~~~~~~  330 (441)
                      ..+..+++..|..+.   .+|  ++ +.+++ +..+.-+.......+..++..     -+||.|+|+||+.+=...+   
T Consensus        29 ra~~~eLr~if~~~as~e~~ge~~m-t~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC---  104 (694)
T KOG0751|consen   29 RADPKELRSIFLKYASIEKNGESYM-TPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLC---  104 (694)
T ss_pred             cCChHHHHHHHHHHhHHhhcccccc-CHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhcc---
Confidence            344556666665444   344  34 55665 444555555555555555543     4899999999998765443   


Q ss_pred             CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhh
Q psy2947         331 DIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTH  363 (441)
Q Consensus       331 ~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~  363 (441)
                      ........+|..||+.++|.++++++..++...
T Consensus       105 ~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t  137 (694)
T KOG0751|consen  105 APDALFEVAFQLFDRLGNGEVSFEDVADIFGQT  137 (694)
T ss_pred             CchHHHHHHHHHhcccCCCceehHHHHHHHhcc
Confidence            346678889999999999999999999988654

>KOG0377|consensus

Probab=98.13  E-value=2.6e-05  Score=72.61  Aligned_cols=135  Identities=17%  Similarity=0.272  Sum_probs=94.3

Q ss_pred             hHHHHHhhhccccC--CCccCHHHHHHHHHHc-CCCcCHHHHHHHHH--hCCCcccHHHHHHHHHhhcCCC---------
Q psy2947         265 YLEFRECFFLFARN--GTIKTLDELSVIMRSL-GMSPTIAELKKYLA--EKGGKLSFPDFLKVMHTHSKAE---------  330 (441)
Q Consensus       265 ~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~-~~~~~~~~~~~~~~--~~~g~i~~~ef~~~~~~~~~~~---------  330 (441)
                      ..++...|..+|.+  |.+ +...+...+..+ +....=..+..-+.  ..+|.+.|.+-.+.+..-....         
T Consensus       463 ~sdL~~eF~~~D~~ksG~l-sis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvet  541 (631)
T KOG0377|consen  463 RSDLEDEFRKYDPKKSGKL-SISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVET  541 (631)
T ss_pred             hhHHHHHHHhcChhhcCee-eHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHH
Confidence            35667788888875  999 788888887764 22222111221111  3567777776666554221110         


Q ss_pred             --CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhc---cCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         331 --DIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHS---KAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       331 --~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~---~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                        .-...+..+|+.+|.|++|.|+.+||+.++..+.   ......+.+-++-+..|-++||.|+..||-.+++-+
T Consensus       542 LYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv  616 (631)
T KOG0377|consen  542 LYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV  616 (631)
T ss_pred             HHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence              0124578899999999999999999999887653   345556788888899999999999999999998754

>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional

Probab=98.11  E-value=1.2e-05  Score=76.74  Aligned_cols=90  Identities=12%  Similarity=0.182  Sum_probs=63.2

Q ss_pred             CHHHHHHHHHhhcCCCCCcccHHHHHH-HHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHH
Q psy2947         332 IPKEVVDAFKAADTTKSGKLSFPDFLK-VMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVD  410 (441)
Q Consensus       332 ~~~~~~~~f~~~D~d~~g~i~~~ef~~-~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~  410 (441)
                      ..+++.+-.+.|..|.   ..++++.. .+....+.......++.+|+.+|.++||.|+.+||..             ++
T Consensus       297 a~ekl~egi~~F~~d~---~~L~~~i~~~~~~~~~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~  360 (391)
T PRK12309        297 ASEKLDEGIKGFSKAL---ETLEKLLAHRLARLEGGEAFTHAAQEIFRLYDLDGDGFITREEWLG-------------SD  360 (391)
T ss_pred             HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhccChhhHHHHHHHHHhCCCCCCcCcHHHHHH-------------HH
Confidence            3455555555555432   22333332 2222334444567889999999999999999999942             56


Q ss_pred             HHHHHhCCCCCCceeHHHHHHHHhccC
Q psy2947         411 QIFREANVTMNSKVRYEDFVKIACAPV  437 (441)
Q Consensus       411 ~l~~~~d~d~dg~i~~~ef~~~l~~~~  437 (441)
                      .+|+.+|.|+||.|+++||...+...+
T Consensus       361 ~~F~~~D~d~DG~Is~eEf~~~~~~~~  387 (391)
T PRK12309        361 AVFDALDLNHDGKITPEEMRAGLGAAL  387 (391)
T ss_pred             HHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence            899999999999999999999886543

>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B

Probab=98.07  E-value=5.7e-06  Score=48.34  Aligned_cols=29  Identities=28%  Similarity=0.428  Sum_probs=20.9

Q ss_pred             HHHHHHHhCCCCCCcccHHHHHHHHH-HhC
Q psy2947         373 VVDAFKAADTTKSGTVPAKYLKHVLV-NWG  401 (441)
Q Consensus       373 ~~~~f~~~D~~~~G~is~~ef~~~l~-~~~  401 (441)
                      ++.+|+.+|.|++|+|+.+||+++++ ++|
T Consensus         2 l~~~F~~~D~d~dG~I~~~el~~~l~~~lG   31 (31)
T PF13405_consen    2 LREAFKMFDKDGDGFIDFEELRAILRKSLG   31 (31)
T ss_dssp             HHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence            56778888888888888888888777 454

...

>KOG0041|consensus

Probab=98.04  E-value=6.7e-05  Score=62.53  Aligned_cols=63  Identities=19%  Similarity=0.382  Sum_probs=52.7

Q ss_pred             HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy2947         371 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA  433 (441)
Q Consensus       371 ~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l  433 (441)
                      .....+|+.+|.+.||+|+..|++.+|.++|.+=+---++.|+++.|.|.||+|+|.||.-..
T Consensus        99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIf  161 (244)
T KOG0041|consen   99 KDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIF  161 (244)
T ss_pred             HHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHH
Confidence            456678999999999999999999999999877666678889999999999999999887543

>KOG4658|consensus

Probab=97.98  E-value=4.6e-06  Score=88.10  Aligned_cols=100  Identities=30%  Similarity=0.389  Sum_probs=66.9

Q ss_pred             cccEEeccCCC-----cCcc-cCCCCCCCEEEccCCC-CCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEE
Q psy2947          62 HAFLLSLSYTP-----IGRR-IFKCDTVEVLSLKSNS-LTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHL  134 (441)
Q Consensus        62 ~L~~l~l~~n~-----i~~~-~~~l~~L~~L~l~~n~-l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L  134 (441)
                      .|+.|-+..|.     ++.. +..++.|++|||++|. +..+|..++.|-+|++|++++..++  .+|.++.+|+.|.+|
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~--~LP~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS--HLPSGLGNLKKLIYL  623 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc--ccchHHHHHHhhhee
Confidence            45566555552     3333 4457777777777664 5577777777777777777777776  777777777777777


Q ss_pred             EccCCCC-CccchhhcCCCCCCEEEccCCc
Q psy2947         135 YLDNNLL-DALPGFLLSMPQLDTVYRHGNH  163 (441)
Q Consensus       135 ~l~~n~l-~~lp~~~~~l~~L~~L~l~~N~  163 (441)
                      ++..+.- ..+|.....+++|++|.+..-.
T Consensus       624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  624 NLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             ccccccccccccchhhhcccccEEEeeccc
Confidence            7776643 4445555567777777765443

>KOG4658|consensus

Probab=97.95  E-value=3e-06  Score=89.45  Aligned_cols=102  Identities=25%  Similarity=0.221  Sum_probs=81.1

Q ss_pred             CCCCCcccEEeccCC----CcCcccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCC
Q psy2947          57 PQYFSHAFLLSLSYT----PIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLT  132 (441)
Q Consensus        57 ~~~l~~L~~l~l~~n----~i~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~  132 (441)
                      +..++.|+.|||++|    .+|..++.+-+|++|+|++..++.+|.++..|..|.+|++..+.-. ..+|.....|.+|+
T Consensus       567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l-~~~~~i~~~L~~Lr  645 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRL-ESIPGILLELQSLR  645 (889)
T ss_pred             HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccccc-ccccchhhhccccc
Confidence            567899999999988    7999999999999999999999999999999999999999988755 35555557799999


Q ss_pred             EEEccCCCC--Ccc-chhhcCCCCCCEEEc
Q psy2947         133 HLYLDNNLL--DAL-PGFLLSMPQLDTVYR  159 (441)
Q Consensus       133 ~L~l~~n~l--~~l-p~~~~~l~~L~~L~l  159 (441)
                      +|.+.....  +.. -..+..+.+|+.+..
T Consensus       646 ~L~l~~s~~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  646 VLRLPRSALSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             EEEeeccccccchhhHHhhhcccchhhhee
Confidence            999876542  111 133445555555544

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.94  E-value=1.9e-05  Score=75.26  Aligned_cols=71  Identities=17%  Similarity=0.193  Sum_probs=37.7

Q ss_pred             CCcccEEeccCCCcCcccCCCCCCCEEEccC-CCCCcCCcCccCCCCCcEEEccCC-cCCCCCCchhhhcCCCCCEEEcc
Q psy2947          60 FSHAFLLSLSYTPIGRRIFKCDTVEVLSLKS-NSLTSLPPDIGRLTNLRVLCLTDN-CLQNASIPFTLTFCKNLTHLYLD  137 (441)
Q Consensus        60 l~~L~~l~l~~n~i~~~~~~l~~L~~L~l~~-n~l~~lp~~~~~l~~L~~L~l~~n-~l~~~~~p~~~~~l~~L~~L~l~  137 (441)
                      +.+++.|++++|.+..-..-..+|+.|.+++ +.++.+|..+  ..+|+.|++++| .+.  .+|.      +|+.|+++
T Consensus        51 ~~~l~~L~Is~c~L~sLP~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~--sLP~------sLe~L~L~  120 (426)
T PRK15386         51 ARASGRLYIKDCDIESLPVLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS--GLPE------SVRSLEIK  120 (426)
T ss_pred             hcCCCEEEeCCCCCcccCCCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc--cccc------ccceEEeC
Confidence            3556667777663321111123577777765 4455666544  246777777766 444  5553      24445555


Q ss_pred             CCC
Q psy2947         138 NNL  140 (441)
Q Consensus       138 ~n~  140 (441)
                      .|.
T Consensus       121 ~n~  123 (426)
T PRK15386        121 GSA  123 (426)
T ss_pred             CCC
Confidence            544

>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional

Probab=97.92  E-value=3.6e-05  Score=73.51  Aligned_cols=57  Identities=18%  Similarity=0.284  Sum_probs=50.2

Q ss_pred             CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         329 AEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       329 ~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      .......+..+|+.+|.|++|.|+.+||..              .+.+|+.+|.|+||.|+++||++.+..
T Consensus       329 ~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~--------------~~~~F~~~D~d~DG~Is~eEf~~~~~~  385 (391)
T PRK12309        329 GEAFTHAAQEIFRLYDLDGDGFITREEWLG--------------SDAVFDALDLNHDGKITPEEMRAGLGA  385 (391)
T ss_pred             cChhhHHHHHHHHHhCCCCCCcCcHHHHHH--------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence            345567889999999999999999999942              467999999999999999999999875

>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10

Probab=97.89  E-value=0.00011  Score=54.26  Aligned_cols=66  Identities=18%  Similarity=0.239  Sum_probs=53.8

Q ss_pred             HHHHHHHHhhcCCCCCcccHHHHHHHHHhh----ccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTH----SKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       334 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~----~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      ..+..+|+.|..+ .++++..||+.++...    .........++.+++..|.|+||.|+++||..++..+
T Consensus         8 ~~lI~~FhkYaG~-~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l   77 (91)
T cd05024           8 EKMMLTFHKFAGE-KNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL   77 (91)
T ss_pred             HHHHHHHHHHcCC-CCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence            4577889999844 5689999999988643    2445556789999999999999999999999998765

S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.

>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A

Probab=97.86  E-value=1.9e-05  Score=43.35  Aligned_cols=21  Identities=29%  Similarity=0.480  Sum_probs=10.6

Q ss_pred             HHHHHhCCCCCCcccHHHHHH
Q psy2947         375 DAFKAADTTKSGTVPAKYLKH  395 (441)
Q Consensus       375 ~~f~~~D~~~~G~is~~ef~~  395 (441)
                      ++|+.+|.|+||.|+.+||++
T Consensus         3 ~~F~~~D~d~DG~is~~E~~~   23 (25)
T PF13202_consen    3 DAFQQFDTDGDGKISFEEFQR   23 (25)
T ss_dssp             HHHHHHTTTSSSEEEHHHHHH
T ss_pred             HHHHHHcCCCCCcCCHHHHHH
Confidence            345555555555555555544

...

>KOG1644|consensus

Probab=97.82  E-value=3.1e-05  Score=65.41  Aligned_cols=81  Identities=33%  Similarity=0.445  Sum_probs=56.5

Q ss_pred             CCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhh-hcCCCCCEEEccCCCCCccc--hhhcCCCCCCEE
Q psy2947          81 DTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTL-TFCKNLTHLYLDNNLLDALP--GFLLSMPQLDTV  157 (441)
Q Consensus        81 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~-~~l~~L~~L~l~~n~l~~lp--~~~~~l~~L~~L  157 (441)
                      .....+||++|.+..++ .|..+..|.+|.+++|+|+  .+.+.+ .-+++|..|.|.+|.|..+-  ..+..++.|++|
T Consensus        42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt--~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRIT--RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             cccceecccccchhhcc-cCCCccccceEEecCCcce--eeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence            34567777777777553 3667777888888888887  555555 34566888888888776554  345667788888


Q ss_pred             EccCCcC
Q psy2947         158 YRHGNHN  164 (441)
Q Consensus       158 ~l~~N~~  164 (441)
                      .+-+|+.
T Consensus       119 tll~Npv  125 (233)
T KOG1644|consen  119 TLLGNPV  125 (233)
T ss_pred             eecCCch
Confidence            8888875

>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A

Probab=97.77  E-value=0.00013  Score=55.92  Aligned_cols=60  Identities=18%  Similarity=0.407  Sum_probs=36.2

Q ss_pred             HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy2947         371 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA  433 (441)
Q Consensus       371 ~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l  433 (441)
                      .....+|+..|. ++|.|+.++.+.++..-|  ++.+.+..|+...|.|++|.++++||+-+|
T Consensus        10 ~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm   69 (104)
T PF12763_consen   10 QKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAM   69 (104)
T ss_dssp             HHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHH
T ss_pred             HHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHH
Confidence            345556666653 456666666666666555  566666666666666666666666666544

...

>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A

Probab=97.75  E-value=9.2e-05  Score=47.64  Aligned_cols=47  Identities=17%  Similarity=0.254  Sum_probs=33.9

Q ss_pred             ccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         388 VPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       388 is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      +++.|++.+++.++..++++-+..+|+..|++++|.+..+||+.+..
T Consensus         2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~   48 (51)
T PF14788_consen    2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYK   48 (51)
T ss_dssp             BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHH
Confidence            67788888888888888888888888888888888888888877654

...

>KOG1644|consensus

Probab=97.74  E-value=5.4e-05  Score=63.98  Aligned_cols=100  Identities=25%  Similarity=0.327  Sum_probs=63.0

Q ss_pred             CcccEEeccCCCcC--cccCCCCCCCEEEccCCCCCcCCcCccC-CCCCcEEEccCCcCCCCCCch--hhhcCCCCCEEE
Q psy2947          61 SHAFLLSLSYTPIG--RRIFKCDTVEVLSLKSNSLTSLPPDIGR-LTNLRVLCLTDNCLQNASIPF--TLTFCKNLTHLY  135 (441)
Q Consensus        61 ~~L~~l~l~~n~i~--~~~~~l~~L~~L~l~~n~l~~lp~~~~~-l~~L~~L~l~~n~l~~~~~p~--~~~~l~~L~~L~  135 (441)
                      .+...+||++|.+-  ..+..++.|.+|.|++|+|+.|.+.+.. +++|..|.+.+|.|.  .+.+  .+..++.|++|.
T Consensus        42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~--~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ--ELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             cccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh--hhhhcchhccCCccceee
Confidence            34566777777543  3455667777777777777776666443 455777777777776  4432  245667777777


Q ss_pred             ccCCCCCccc----hhhcCCCCCCEEEccCC
Q psy2947         136 LDNNLLDALP----GFLLSMPQLDTVYRHGN  162 (441)
Q Consensus       136 l~~n~l~~lp----~~~~~l~~L~~L~l~~N  162 (441)
                      +-+|++...+    -.+..+++|+.||...-
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            7777776544    23455667777666543

>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A

Probab=97.69  E-value=5.2e-05  Score=41.58  Aligned_cols=25  Identities=40%  Similarity=0.737  Sum_probs=22.0

Q ss_pred             HHHHHHhhcCCCCCcccHHHHHHHH
Q psy2947         336 VVDAFKAADTTKSGKLSFPDFLKVM  360 (441)
Q Consensus       336 ~~~~f~~~D~d~~g~i~~~ef~~~~  360 (441)
                      ++++|+.+|.|+||.|+.+||.+++
T Consensus         1 l~~~F~~~D~d~DG~is~~E~~~~~   25 (25)
T PF13202_consen    1 LKDAFQQFDTDGDGKISFEEFQRLV   25 (25)
T ss_dssp             HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred             CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence            3578999999999999999998864

...

>KOG0040|consensus

Probab=97.55  E-value=0.0011  Score=70.78  Aligned_cols=119  Identities=21%  Similarity=0.331  Sum_probs=85.7

Q ss_pred             HhCCCcccHHHHHHHHHhhcCCCCC------HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhcc-CCCChHHHHHHHHHh
Q psy2947         308 AEKGGKLSFPDFLKVMHTHSKAEDI------PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSK-AEDIPKEVVDAFKAA  380 (441)
Q Consensus       308 ~~~~g~i~~~ef~~~~~~~~~~~~~------~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~-~~~~~~~~~~~f~~~  380 (441)
                      ++++|.+++++|...++......++      +.+++++...+|++.+|+|+..|+.++|-.... .-...+.|+.+|+..
T Consensus      2264 kek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s~~eIE~AfraL 2343 (2399)
T KOG0040|consen 2264 KEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENILSSEEIEDAFRAL 2343 (2399)
T ss_pred             hhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccchHHHHHHHHHh
Confidence            4678888888888777765544322      347888999999999999999999998865432 223356899999999


Q ss_pred             CCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHH----hCCC----CCCceeHHHHHHHHh
Q psy2947         381 DTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFRE----ANVT----MNSKVRYEDFVKIAC  434 (441)
Q Consensus       381 D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~----~d~d----~dg~i~~~ef~~~l~  434 (441)
                      |. +.-+|+.++..+.|       +.++++..+.+    +|+.    -.+.+.|.+|++.+.
T Consensus      2344 ~a-~~~yvtke~~~~~l-------treqaefc~s~m~~~~e~~~~~s~q~~l~y~dfv~sl~ 2397 (2399)
T KOG0040|consen 2344 DA-GKPYVTKEELYQNL-------TREQAEFCMSKMKPYAETSSGRSDQVALDYKDFVNSLF 2397 (2399)
T ss_pred             hc-CCccccHHHHHhcC-------CHHHHHHHHHHhhhhcccccCCCccccccHHHHHHHHh
Confidence            98 88999999987655       44555444443    3321    124699999998764

>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B

Probab=97.55  E-value=0.00011  Score=42.81  Aligned_cols=27  Identities=22%  Similarity=0.475  Sum_probs=24.0

Q ss_pred             HHHHHHHhhcCCCCCcccHHHHHHHHH
Q psy2947         335 EVVDAFKAADTTKSGKLSFPDFLKVMH  361 (441)
Q Consensus       335 ~~~~~f~~~D~d~~g~i~~~ef~~~~~  361 (441)
                      +++.+|+.+|.|++|+|+.+||..++.
T Consensus         1 ~l~~~F~~~D~d~dG~I~~~el~~~l~   27 (31)
T PF13405_consen    1 RLREAFKMFDKDGDGFIDFEELRAILR   27 (31)
T ss_dssp             HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred             CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence            467899999999999999999999887

...

>KOG0040|consensus

Probab=97.52  E-value=0.00025  Score=75.23  Aligned_cols=101  Identities=21%  Similarity=0.275  Sum_probs=81.0

Q ss_pred             HHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCC------CChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhC--CCCC
Q psy2947         334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAE------DIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWG--EGLS  405 (441)
Q Consensus       334 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~------~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~--~~l~  405 (441)
                      .++.-+|+.||.+.+|.++..+|...++.+...-      ..+.+++++....|++.+|+|+..|..++|....  .-.+
T Consensus      2253 ~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s 2332 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENILS 2332 (2399)
T ss_pred             HHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccc
Confidence            4567789999999999999999999998775332      2234899999999999999999999999998643  2357


Q ss_pred             HHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         406 SKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       406 ~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      .++++..|+.+|. +.-.|+.++....|.+
T Consensus      2333 ~~eIE~AfraL~a-~~~yvtke~~~~~ltr 2361 (2399)
T KOG0040|consen 2333 SEEIEDAFRALDA-GKPYVTKEELYQNLTR 2361 (2399)
T ss_pred             hHHHHHHHHHhhc-CCccccHHHHHhcCCH
Confidence            7799999999987 6667888777554433

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.47  E-value=0.0004  Score=66.40  Aligned_cols=109  Identities=17%  Similarity=0.254  Sum_probs=64.9

Q ss_pred             CCCCCCCcccEEeccCC----CcCcccCCCCCCCEEEccCC-CCCcCCcCccCCCCCcEEEccCCcCCC-CCCchhhhcC
Q psy2947          55 WIPQYFSHAFLLSLSYT----PIGRRIFKCDTVEVLSLKSN-SLTSLPPDIGRLTNLRVLCLTDNCLQN-ASIPFTLTFC  128 (441)
Q Consensus        55 ~~~~~l~~L~~l~l~~n----~i~~~~~~l~~L~~L~l~~n-~l~~lp~~~~~l~~L~~L~l~~n~l~~-~~~p~~~~~l  128 (441)
                      .+|....+|+.|.++++    .+|..+.  ++|+.|++++| .+..+|+.      |+.|++++|.... +.+|.+    
T Consensus        66 sLP~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s------Le~L~L~~n~~~~L~~LPss----  133 (426)
T PRK15386         66 SLPVLPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES------VRSLEIKGSATDSIKNVPNG----  133 (426)
T ss_pred             ccCCCCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc------cceEEeCCCCCcccccCcch----
Confidence            33443457999999876    3454442  68999999998 67777754      6677787766430 245544    


Q ss_pred             CCCCEEEccCCC-C--CccchhhcCC-CCCCEEEccCCcCccCcccccccccccccccccch
Q psy2947         129 KNLTHLYLDNNL-L--DALPGFLLSM-PQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTST  186 (441)
Q Consensus       129 ~~L~~L~l~~n~-l--~~lp~~~~~l-~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~  186 (441)
                        |+.|.+.+++ .  ..+|.   .+ ++|++|.+++|....      ++..+|.++..|..
T Consensus       134 --Lk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i~------LP~~LP~SLk~L~l  184 (426)
T PRK15386        134 --LTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNII------LPEKLPESLQSITL  184 (426)
T ss_pred             --Hhheecccccccccccccc---ccCCcccEEEecCCCccc------CcccccccCcEEEe
Confidence              4455554322 1  12221   12 568888888776432      33456666666554

>KOG2562|consensus

Probab=97.45  E-value=0.001  Score=62.96  Aligned_cols=126  Identities=13%  Similarity=0.211  Sum_probs=88.4

Q ss_pred             hHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHH--------hCCCcccHHHHHHHHHhhcCCCCCHH
Q psy2947         265 YLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLA--------EKGGKLSFPDFLKVMHTHSKAEDIPK  334 (441)
Q Consensus       265 ~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~--------~~~g~i~~~ef~~~~~~~~~~~~~~~  334 (441)
                      ...+-..|-.+|+|  |.+ +++++..+-....   +...+++++.        ..+|+++|++|+.++-.. ..+....
T Consensus       277 f~viy~kFweLD~Dhd~li-dk~~L~ry~d~tl---t~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~-e~k~t~~  351 (493)
T KOG2562|consen  277 FYVIYCKFWELDTDHDGLI-DKEDLKRYGDHTL---TERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAE-EDKDTPA  351 (493)
T ss_pred             HHHHHHHHhhhcccccccc-CHHHHHHHhccch---hhHHHHHHHhhccccceeeecCcccHHHHHHHHHHh-ccCCCcc
Confidence            33333446667775  788 7888776654433   3445566665        368999999999988755 3345667


Q ss_pred             HHHHHHHhhcCCCCCcccHHHHHHHHHhhc-------cCCCC-hHHHHHHHHHhCCCCCCcccHHHHHH
Q psy2947         335 EVVDAFKAADTTKSGKLSFPDFLKVMHTHS-------KAEDI-PKEVVDAFKAADTTKSGTVPAKYLKH  395 (441)
Q Consensus       335 ~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~-------~~~~~-~~~~~~~f~~~D~~~~G~is~~ef~~  395 (441)
                      .+...|+.+|.+++|.++..|+.-+.....       -+... ++.+-++|.+..+...+.||.++|+.
T Consensus       352 SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~  420 (493)
T KOG2562|consen  352 SLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG  420 (493)
T ss_pred             chhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence            889999999999999999988876544321       11111 34556788888888899999999977

>KOG1909|consensus

Probab=97.43  E-value=4.2e-05  Score=69.88  Aligned_cols=156  Identities=21%  Similarity=0.210  Sum_probs=88.3

Q ss_pred             CCcccEEeccCCCc--------CcccCCCCCCCEEEccCCC---CC-cCCcC-------ccCCCCCcEEEccCCcCCCCC
Q psy2947          60 FSHAFLLSLSYTPI--------GRRIFKCDTVEVLSLKSNS---LT-SLPPD-------IGRLTNLRVLCLTDNCLQNAS  120 (441)
Q Consensus        60 l~~L~~l~l~~n~i--------~~~~~~l~~L~~L~l~~n~---l~-~lp~~-------~~~l~~L~~L~l~~n~l~~~~  120 (441)
                      ...++.++||+|.|        ...+.+.+.|+..++|.--   +. .+|+.       +-..++|+.|+||.|-+.. .
T Consensus        29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~-~  107 (382)
T KOG1909|consen   29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP-K  107 (382)
T ss_pred             cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc-c
Confidence            45677778887743        2455566677777776431   22 44443       3334577777777777651 2


Q ss_pred             Cchh----hhcCCCCCEEEccCCCCCccch--------------hhcCCCCCCEEEccCCcCccCccccccccccccccc
Q psy2947         121 IPFT----LTFCKNLTHLYLDNNLLDALPG--------------FLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIR  182 (441)
Q Consensus       121 ~p~~----~~~l~~L~~L~l~~n~l~~lp~--------------~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~  182 (441)
                      -+..    +.++.+|++|+|.+|.++..-.              ..+.-+.|+.+..+.|++.......     +-..++
T Consensus       108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~-----~A~~~~  182 (382)
T KOG1909|consen  108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATA-----LAEAFQ  182 (382)
T ss_pred             chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHH-----HHHHHH
Confidence            2222    3556677777777777753321              1233456777777777754333211     122333


Q ss_pred             ccchhHHH-Hhhccc-----ccCCchhhhhhhhcccccccccCCC
Q psy2947         183 STSTRDEV-LRKQKK-----LHQPSRLQDLAVQSVIASKENFFEP  221 (441)
Q Consensus       183 ~l~~~~~~-l~~~~~-----~~~p~~l~~l~~l~~l~l~~n~~~~  221 (441)
                      ..+.+..+ +..|.+     +-+...+..+++|++|+++.|.|..
T Consensus       183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~  227 (382)
T KOG1909|consen  183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTL  227 (382)
T ss_pred             hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhh
Confidence            33333333 333322     2234567888999999999997763

>KOG2982|consensus

Probab=97.40  E-value=6.3e-05  Score=67.30  Aligned_cols=81  Identities=26%  Similarity=0.301  Sum_probs=41.2

Q ss_pred             CCCCCEEEccCCCCC---cCCcCccCCCCCcEEEccCCcCCCCCCchhh-hcCCCCCEEEccCCCC--CccchhhcCCCC
Q psy2947          80 CDTVEVLSLKSNSLT---SLPPDIGRLTNLRVLCLTDNCLQNASIPFTL-TFCKNLTHLYLDNNLL--DALPGFLLSMPQ  153 (441)
Q Consensus        80 l~~L~~L~l~~n~l~---~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~-~~l~~L~~L~l~~n~l--~~lp~~~~~l~~  153 (441)
                      ++.++.|+|.+|.|+   ++..-+.+|+.|++|+++.|.+. ..|. ++ ..+.+|+.|-|.+..+  +.+...+..+|.
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~-s~I~-~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~  147 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLS-SDIK-SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK  147 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCC-Cccc-cCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence            345566666666665   22222455666666666666554 1221 11 2344556665555544  233344455555


Q ss_pred             CCEEEccCC
Q psy2947         154 LDTVYRHGN  162 (441)
Q Consensus       154 L~~L~l~~N  162 (441)
                      ++.|+++.|
T Consensus       148 vtelHmS~N  156 (418)
T KOG2982|consen  148 VTELHMSDN  156 (418)
T ss_pred             hhhhhhccc
Confidence            566666655

>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A

Probab=97.35  E-value=0.00082  Score=43.32  Aligned_cols=49  Identities=16%  Similarity=0.263  Sum_probs=33.6

Q ss_pred             ccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         351 LSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       351 i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      +++.|.+.+++... -...++....+|+.+|++++|.+..+||..+++.+
T Consensus         2 msf~Evk~lLk~~N-I~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L   50 (51)
T PF14788_consen    2 MSFKEVKKLLKMMN-IEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL   50 (51)
T ss_dssp             BEHHHHHHHHHHTT-----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHc-cCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence            46667776666652 23335677788999999999999999998888753

...

>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A

Probab=97.33  E-value=0.0011  Score=50.80  Aligned_cols=62  Identities=13%  Similarity=0.151  Sum_probs=50.8

Q ss_pred             HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy2947         333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLV  398 (441)
Q Consensus       333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~  398 (441)
                      ......+|...|. ++|.|+-++.+.++...   ....+.+..+|...|.+++|+++.+||.-+|+
T Consensus         9 ~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S---~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~   70 (104)
T PF12763_consen    9 KQKYDQIFQSLDP-QDGKISGDQAREFFMKS---GLPRDVLAQIWNLADIDNDGKLDFEEFAIAMH   70 (104)
T ss_dssp             HHHHHHHHHCTSS-STTEEEHHHHHHHHHHT---TSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred             HHHHHHHHHhcCC-CCCeEeHHHHHHHHHHc---CCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence            3567788888885 68999999998876643   45578999999999999999999999998886

...

>KOG1909|consensus

Probab=97.29  E-value=6.4e-05  Score=68.72  Aligned_cols=134  Identities=15%  Similarity=0.109  Sum_probs=61.9

Q ss_pred             CCCCCCEEEccCCCCC-cCCcC----ccCCCCCcEEEccCCcCCCCCCchh--------------hhcCCCCCEEEccCC
Q psy2947          79 KCDTVEVLSLKSNSLT-SLPPD----IGRLTNLRVLCLTDNCLQNASIPFT--------------LTFCKNLTHLYLDNN  139 (441)
Q Consensus        79 ~l~~L~~L~l~~n~l~-~lp~~----~~~l~~L~~L~l~~n~l~~~~~p~~--------------~~~l~~L~~L~l~~n  139 (441)
                      .++.|++|+||.|-|. .-++.    +.+.+.|++|.|.+|.+.  .....              .+.-+.|++++.+.|
T Consensus        90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg--~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN  167 (382)
T KOG1909|consen   90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG--PEAGGRLGRALFELAVNKKAASKPKLRVFICGRN  167 (382)
T ss_pred             cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC--hhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence            4445666666666555 11111    444555666666665553  21111              112245555666666


Q ss_pred             CCCccc-----hhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-Hhhccccc-----CCchhhhhhh
Q psy2947         140 LLDALP-----GFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLH-----QPSRLQDLAV  208 (441)
Q Consensus       140 ~l~~lp-----~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~-----~p~~l~~l~~  208 (441)
                      ++..-+     ..|...+.|+.+.+..|.+.....     ..+-..+...+.+..+ ++.|.++.     +...+..++.
T Consensus       168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~-----~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~  242 (382)
T KOG1909|consen  168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGV-----TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPH  242 (382)
T ss_pred             ccccccHHHHHHHHHhccccceEEEecccccCchh-----HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccch
Confidence            554332     334445555566665555433221     0112233334444444 44444322     2334556666


Q ss_pred             hcccccccccC
Q psy2947         209 QSVIASKENFF  219 (441)
Q Consensus       209 l~~l~l~~n~~  219 (441)
                      |+.++++...+
T Consensus       243 L~El~l~dcll  253 (382)
T KOG1909|consen  243 LRELNLGDCLL  253 (382)
T ss_pred             heeeccccccc
Confidence            66666665533

>KOG2562|consensus

Probab=97.29  E-value=0.00093  Score=63.21  Aligned_cols=121  Identities=17%  Similarity=0.244  Sum_probs=86.2

Q ss_pred             HHHhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHh----hcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhC
Q psy2947         306 YLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKA----ADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAAD  381 (441)
Q Consensus       306 ~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~----~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D  381 (441)
                      ++.|++|.|+-+++...-.    ...+.--+.++|..    +=.-.+|.+++++|.-++-.. .......-++-.|+..|
T Consensus       287 LD~Dhd~lidk~~L~ry~d----~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~-e~k~t~~SleYwFrclD  361 (493)
T KOG2562|consen  287 LDTDHDGLIDKEDLKRYGD----HTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAE-EDKDTPASLEYWFRCLD  361 (493)
T ss_pred             hccccccccCHHHHHHHhc----cchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHh-ccCCCccchhhheeeee
Confidence            3456788888777655432    22334557777773    334568999999999988777 34445667888999999


Q ss_pred             CCCCCcccHHHHHHHHHH-------hC-CCCC-HHHHHHHHHHhCCCCCCceeHHHHHH
Q psy2947         382 TTKSGTVPAKYLKHVLVN-------WG-EGLS-SKEVDQIFREANVTMNSKVRYEDFVK  431 (441)
Q Consensus       382 ~~~~G~is~~ef~~~l~~-------~~-~~l~-~~~~~~l~~~~d~d~dg~i~~~ef~~  431 (441)
                      .+++|.++..|++-+...       +| .+++ ++.+.+++..+-....++|+..+|..
T Consensus       362 ld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~  420 (493)
T KOG2562|consen  362 LDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG  420 (493)
T ss_pred             ccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence            999999999999777654       23 2333 44456777777656688999999986

>KOG2982|consensus

Probab=97.26  E-value=4.9e-05  Score=67.98  Aligned_cols=105  Identities=23%  Similarity=0.170  Sum_probs=73.7

Q ss_pred             CCCcccEEeccCCCcC------cccCCCCCCCEEEccCCCCCcCCcCc-cCCCCCcEEEccCCcCCCCCCchhhhcCCCC
Q psy2947          59 YFSHAFLLSLSYTPIG------RRIFKCDTVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFCKNL  131 (441)
Q Consensus        59 ~l~~L~~l~l~~n~i~------~~~~~l~~L~~L~l~~n~l~~lp~~~-~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L  131 (441)
                      ..++++.++|..|.|.      ..+.+++.|+.|+|+.|++...-..+ ..+.+|+.|.|.+..+.+...-+.+..++.+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            3578899999999765      34568999999999999988322222 3578899999999887744455556888999


Q ss_pred             CEEEccCCCCCccc---hhhcCC-CCCCEEEccCCc
Q psy2947         132 THLYLDNNLLDALP---GFLLSM-PQLDTVYRHGNH  163 (441)
Q Consensus       132 ~~L~l~~n~l~~lp---~~~~~l-~~L~~L~l~~N~  163 (441)
                      +.|++|.|.+..+-   ...... +.+++|++..|.
T Consensus       149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~  184 (418)
T KOG2982|consen  149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCL  184 (418)
T ss_pred             hhhhhccchhhhhccccccccccchhhhhhhcCCcH
Confidence            99999999665331   111222 345666666665

>KOG2739|consensus

Probab=97.17  E-value=0.00024  Score=62.67  Aligned_cols=79  Identities=28%  Similarity=0.264  Sum_probs=37.3

Q ss_pred             cCCCCCCCEEEccCC--CCC-cCCcCccCCCCCcEEEccCCcCCCCCCchhh---hcCCCCCEEEccCCCCCccc----h
Q psy2947          77 IFKCDTVEVLSLKSN--SLT-SLPPDIGRLTNLRVLCLTDNCLQNASIPFTL---TFCKNLTHLYLDNNLLDALP----G  146 (441)
Q Consensus        77 ~~~l~~L~~L~l~~n--~l~-~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~---~~l~~L~~L~l~~n~l~~lp----~  146 (441)
                      +..+++|+.|.+|.|  ++. .++.-...+++|++|++++|+|+   +++++   ..+.+|..|++.+|....+-    .
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~---~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~  137 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK---DLSTLRPLKELENLKSLDLFNCSVTNLDDYREK  137 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc---cccccchhhhhcchhhhhcccCCccccccHHHH
Confidence            344556666666666  333 33333333456666666666654   12222   33444555555555444332    2


Q ss_pred             hhcCCCCCCEEE
Q psy2947         147 FLLSMPQLDTVY  158 (441)
Q Consensus       147 ~~~~l~~L~~L~  158 (441)
                      .|.-+++|++|+
T Consensus       138 vf~ll~~L~~LD  149 (260)
T KOG2739|consen  138 VFLLLPSLKYLD  149 (260)
T ss_pred             HHHHhhhhcccc
Confidence            233345554443

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.15  E-value=3.6e-05  Score=48.80  Aligned_cols=42  Identities=17%  Similarity=0.223  Sum_probs=27.4

Q ss_pred             CccCeeEEeeccccCCCCCcCCCCCCCCCCCcCCCCCccCCCCccC
Q psy2947           7 NNEGFQATRNKQGVGFSRRSSFKNKNSTPQTACQRNCSLEVGGICS   52 (441)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~c~~~~~~~c~   52 (441)
                      +.|+.||++||+++..+|...+.+|+......|   |+ |.||.|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~---C~-W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDP---CS-WSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-C---CC-STTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcCCCCC---ee-eccEEeC
Confidence            568899999999999887778889988641223   56 4689884

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG2739|consensus

Probab=97.14  E-value=0.00035  Score=61.61  Aligned_cols=84  Identities=24%  Similarity=0.269  Sum_probs=60.6

Q ss_pred             CCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCC--cCCCCCCchhhhcCCCCCEEEccCCCCCccc--hhhcCCCC
Q psy2947          78 FKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDN--CLQNASIPFTLTFCKNLTHLYLDNNLLDALP--GFLLSMPQ  153 (441)
Q Consensus        78 ~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n--~l~~~~~p~~~~~l~~L~~L~l~~n~l~~lp--~~~~~l~~  153 (441)
                      -.+..|+.|.+.+..++.+ ..+..|++|+.|.+|.|  ++. +.++.-...+++|++|++++|+|..+.  ..+..+.+
T Consensus        40 d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~-~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n  117 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVS-GGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN  117 (260)
T ss_pred             ccccchhhhhhhccceeec-ccCCCcchhhhhcccCCccccc-ccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence            3445677777777776644 23567889999999999  666 556555566799999999999886542  23456777


Q ss_pred             CCEEEccCCc
Q psy2947         154 LDTVYRHGNH  163 (441)
Q Consensus       154 L~~L~l~~N~  163 (441)
                      |..|++.+|.
T Consensus       118 L~~Ldl~n~~  127 (260)
T KOG2739|consen  118 LKSLDLFNCS  127 (260)
T ss_pred             hhhhhcccCC
Confidence            8888888877

>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C

Probab=97.04  E-value=0.002  Score=47.45  Aligned_cols=66  Identities=12%  Similarity=0.247  Sum_probs=52.1

Q ss_pred             HHHHHHHHhCCCCCCcccHHHHHHHHHHhC-C-CCCHHHHHHHHHHhCCC----CCCceeHHHHHHHHhccCC
Q psy2947         372 EVVDAFKAADTTKSGTVPAKYLKHVLVNWG-E-GLSSKEVDQIFREANVT----MNSKVRYEDFVKIACAPVP  438 (441)
Q Consensus       372 ~~~~~f~~~D~~~~G~is~~ef~~~l~~~~-~-~l~~~~~~~l~~~~d~d----~dg~i~~~ef~~~l~~~~~  438 (441)
                      +|+.+|+.+-. +.+.||.++|+++|+... . .++.++++.++.++..+    ..+.+++++|.++|....+
T Consensus         1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~N   72 (83)
T PF09279_consen    1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDEN   72 (83)
T ss_dssp             HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTTC
T ss_pred             CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCcC
Confidence            46788988844 789999999999998743 3 46889999999988644    3688999999999977644

It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....

>KOG0751|consensus

Probab=97.01  E-value=0.01  Score=56.61  Aligned_cols=136  Identities=16%  Similarity=0.185  Sum_probs=90.6

Q ss_pred             CcCHHHHHHHH-------HhCCCcccHHHHHHHHHhhcCCCCCHHHHHH-HHHhhcCCCCCcccHHHHHHHHHhhccCCC
Q psy2947         297 SPTIAELKKYL-------AEKGGKLSFPDFLKVMHTHSKAEDIPKEVVD-AFKAADTTKSGKLSFPDFLKVMHTHSKAED  368 (441)
Q Consensus       297 ~~~~~~~~~~~-------~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~-~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~  368 (441)
                      ...+.++..++       .++....+-++|+...-..........+... +-...|...||-|+++||+.+=..+. .. 
T Consensus        29 ra~~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC-~p-  106 (694)
T KOG0751|consen   29 RADPKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLC-AP-  106 (694)
T ss_pred             cCChHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhcc-Cc-
Confidence            44556665554       2345568999999887766665444444444 45566888899999999987655442 22 


Q ss_pred             ChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCC--CC-HHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         369 IPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEG--LS-SKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       369 ~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~--l~-~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                       +.....+|+.||+.++|.+|.+++.+++......  .+ +-+-+.+=..+..+..-.++|.||.+++-.
T Consensus       107 -Dal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~  175 (694)
T KOG0751|consen  107 -DALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHE  175 (694)
T ss_pred             -hHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHH
Confidence             4566789999999999999999999999875421  11 112222333333334457999999988743

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.00  E-value=0.00019  Score=63.45  Aligned_cols=154  Identities=22%  Similarity=0.258  Sum_probs=95.0

Q ss_pred             CCcccEEeccCCCcC--------cccCCCCCCCEEEccCCCCC----cCCc-------CccCCCCCcEEEccCCcCCCCC
Q psy2947          60 FSHAFLLSLSYTPIG--------RRIFKCDTVEVLSLKSNSLT----SLPP-------DIGRLTNLRVLCLTDNCLQNAS  120 (441)
Q Consensus        60 l~~L~~l~l~~n~i~--------~~~~~l~~L~~L~l~~n~l~----~lp~-------~~~~l~~L~~L~l~~n~l~~~~  120 (441)
                      +..++.++||+|.|.        ..|.+-.+|+..+++.-...    .+|.       .+-++++|+..+||.|.+. ..
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg-~~  107 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG-SE  107 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC-cc
Confidence            567788999999654        34555678888887754322    3333       3556788999999999886 45


Q ss_pred             Cchh----hhcCCCCCEEEccCCCCCccc-hhh-------------cCCCCCCEEEccCCcCccCccccccccccccccc
Q psy2947         121 IPFT----LTFCKNLTHLYLDNNLLDALP-GFL-------------LSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIR  182 (441)
Q Consensus       121 ~p~~----~~~l~~L~~L~l~~n~l~~lp-~~~-------------~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~  182 (441)
                      .|..    +++-..|.+|.+++|.++.+. .-+             .+-|.|+......|++...+.-.|     -..+.
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~-----a~~l~  182 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELS-----AALLE  182 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHH-----HHHHH
Confidence            5543    356678999999999887654 112             234778888888888644332211     00111


Q ss_pred             ccchhHHH-HhhcccccCCc--------hhhhhhhhcccccccccCCC
Q psy2947         183 STSTRDEV-LRKQKKLHQPS--------RLQDLAVQSVIASKENFFEP  221 (441)
Q Consensus       183 ~l~~~~~~-l~~~~~~~~p~--------~l~~l~~l~~l~l~~n~~~~  221 (441)
                      +-..++.+ +..|.+  -|.        .+..+.+|.+|+++.|.++.
T Consensus       183 sh~~lk~vki~qNgI--rpegv~~L~~~gl~y~~~LevLDlqDNtft~  228 (388)
T COG5238         183 SHENLKEVKIQQNGI--RPEGVTMLAFLGLFYSHSLEVLDLQDNTFTL  228 (388)
T ss_pred             hhcCceeEEeeecCc--CcchhHHHHHHHHHHhCcceeeeccccchhh
Confidence            11111111 222222  132        35566799999999998763

>KOG3665|consensus

Probab=96.99  E-value=0.00027  Score=73.04  Aligned_cols=61  Identities=21%  Similarity=0.293  Sum_probs=26.9

Q ss_pred             CCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEccCCC
Q psy2947          79 KCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNL  140 (441)
Q Consensus        79 ~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~  140 (441)
                      ++++|..||+|+.+++.+ .++++|.+|+.|.+.+=.+.....=..+.+|++|++||+|...
T Consensus       171 sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~  231 (699)
T KOG3665|consen  171 SFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK  231 (699)
T ss_pred             ccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence            344555555555555544 3445555555554444333300001133445555555555443

>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins

Probab=96.99  E-value=0.00034  Score=54.70  Aligned_cols=59  Identities=19%  Similarity=0.246  Sum_probs=36.8

Q ss_pred             HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHH
Q psy2947         371 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVK  431 (441)
Q Consensus       371 ~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~  431 (441)
                      ..+.-.|...|.|+||.|+..|++.+...+.  ..+..+...++..|.|+||.||..|+..
T Consensus        54 ~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~--~~e~C~~~F~~~CD~n~d~~Is~~EW~~  112 (113)
T PF10591_consen   54 RVVHWKFCQLDRNKDGVLDRSELKPLRRPLM--PPEHCARPFFRSCDVNKDGKISLDEWCN  112 (113)
T ss_dssp             HHHHHHHHHH--T-SSEE-TTTTGGGGSTTS--TTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred             hhhhhhHhhhcCCCCCccCHHHHHHHHHHHh--hhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence            4556668888888888888888777665442  3344567778888888888888888764

SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.

>KOG3665|consensus

Probab=96.93  E-value=0.00073  Score=69.92  Aligned_cols=100  Identities=15%  Similarity=0.176  Sum_probs=55.6

Q ss_pred             CcccEEeccCCC-c----CcccC-CCCCCCEEEccCCCCC--cCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCC
Q psy2947          61 SHAFLLSLSYTP-I----GRRIF-KCDTVEVLSLKSNSLT--SLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLT  132 (441)
Q Consensus        61 ~~L~~l~l~~n~-i----~~~~~-~l~~L~~L~l~~n~l~--~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~  132 (441)
                      .+|+.|++++.. +    |..++ .+|+|+.|.+++-.+.  .+-.-..++++|..||+|+.+++  .+ .++++|++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~--nl-~GIS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS--NL-SGISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc--Cc-HHHhccccHH
Confidence            456666666652 1    22233 3566666666665544  22222445666666777776665  44 4566666666


Q ss_pred             EEEccCCCCCccc--hhhcCCCCCCEEEccCCc
Q psy2947         133 HLYLDNNLLDALP--GFLLSMPQLDTVYRHGNH  163 (441)
Q Consensus       133 ~L~l~~n~l~~lp--~~~~~l~~L~~L~l~~N~  163 (441)
                      .|.+.+=.+..-.  ..+.+|++|+.||+|...
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~  231 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK  231 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence            6666554443322  344556666666666654

>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins

Probab=96.92  E-value=0.00053  Score=53.63  Aligned_cols=60  Identities=17%  Similarity=0.150  Sum_probs=42.9

Q ss_pred             HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHH
Q psy2947         333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKH  395 (441)
Q Consensus       333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~  395 (441)
                      ...+...|..+|.|+||.++..|+..+-..+   ...+.-++..|+..|.|+||.||..|...
T Consensus        53 ~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l---~~~e~C~~~F~~~CD~n~d~~Is~~EW~~  112 (113)
T PF10591_consen   53 KRVVHWKFCQLDRNKDGVLDRSELKPLRRPL---MPPEHCARPFFRSCDVNKDGKISLDEWCN  112 (113)
T ss_dssp             HHHHHHHHHHH--T-SSEE-TTTTGGGGSTT---STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred             hhhhhhhHhhhcCCCCCccCHHHHHHHHHHH---hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence            4668888999999999999999988765544   22244577899999999999999999753

SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.

>KOG4666|consensus

Probab=96.79  E-value=0.0009  Score=60.22  Aligned_cols=92  Identities=12%  Similarity=0.081  Sum_probs=77.6

Q ss_pred             HhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCc
Q psy2947         308 AEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGT  387 (441)
Q Consensus       308 ~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~  387 (441)
                      ..++|.+++.|....+.-...+.....-++.+|+.|+.+.||.+.-++|.-+++...+-.  +-++-..|...++..+|+
T Consensus       270 e~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~--~l~v~~lf~~i~q~d~~k  347 (412)
T KOG4666|consen  270 EGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGVE--VLRVPVLFPSIEQKDDPK  347 (412)
T ss_pred             CCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCcc--eeeccccchhhhcccCcc
Confidence            467899999999998888888888899999999999999999999999988887653322  234567899999999999


Q ss_pred             ccHHHHHHHHHHhC
Q psy2947         388 VPAKYLKHVLVNWG  401 (441)
Q Consensus       388 is~~ef~~~l~~~~  401 (441)
                      |++++|++++...+
T Consensus       348 i~~~~f~~fa~~~p  361 (412)
T KOG4666|consen  348 IYASNFRKFAATEP  361 (412)
T ss_pred             eeHHHHHHHHHhCc
Confidence            99999999987644

>KOG0473|consensus

Probab=96.76  E-value=3.7e-05  Score=66.32  Aligned_cols=87  Identities=22%  Similarity=0.171  Sum_probs=78.8

Q ss_pred             ccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEccCCCCCccchhhcCCCCCC
Q psy2947          76 RIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLD  155 (441)
Q Consensus        76 ~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~  155 (441)
                      .+......+.||++.|++..+...|+-++.|..|+++.|++.  .+|..++.+..++++++..|+.+..|.+++..+.++
T Consensus        37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~--~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k  114 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIK--FLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPK  114 (326)
T ss_pred             hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHh--hChhhHHHHHHHHHHHhhccchhhCCccccccCCcc
Confidence            455667789999999999988888999999999999999998  899999999999999999999999999999999999


Q ss_pred             EEEccCCcC
Q psy2947         156 TVYRHGNHN  164 (441)
Q Consensus       156 ~L~l~~N~~  164 (441)
                      ++++-+|++
T Consensus       115 ~~e~k~~~~  123 (326)
T KOG0473|consen  115 KNEQKKTEF  123 (326)
T ss_pred             hhhhccCcc
Confidence            999999984

>KOG2123|consensus

Probab=96.63  E-value=0.00012  Score=64.86  Aligned_cols=77  Identities=31%  Similarity=0.343  Sum_probs=41.6

Q ss_pred             CcccEEeccCCCcCc--ccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCch--hhhcCCCCCEEEc
Q psy2947          61 SHAFLLSLSYTPIGR--RIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPF--TLTFCKNLTHLYL  136 (441)
Q Consensus        61 ~~L~~l~l~~n~i~~--~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~--~~~~l~~L~~L~l  136 (441)
                      .+++.|+.-++.+..  ....++.|++|.||-|.|+.+. .+..+++|++|+|..|.|.  .+..  -+.++++|+.|.|
T Consensus        19 ~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~--sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIE--SLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HHhhhhcccCCCccHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccc--cHHHHHHHhcCchhhhHhh
Confidence            334444444443331  1235666667766666666552 2555666666666666665  4432  1355566666666


Q ss_pred             cCCC
Q psy2947         137 DNNL  140 (441)
Q Consensus       137 ~~n~  140 (441)
                      ..|.
T Consensus        96 ~ENP   99 (388)
T KOG2123|consen   96 DENP   99 (388)
T ss_pred             ccCC
Confidence            6554

>KOG0046|consensus

Probab=96.58  E-value=0.0064  Score=58.48  Aligned_cols=59  Identities=25%  Similarity=0.412  Sum_probs=31.3

Q ss_pred             HHHHHHHhCCCCCCcccHHHHHHHHHHhCCCC---CHHHHHHHHHHhCCCCCCceeHHHHHHH
Q psy2947         373 VVDAFKAADTTKSGTVPAKYLKHVLVNWGEGL---SSKEVDQIFREANVTMNSKVRYEDFVKI  432 (441)
Q Consensus       373 ~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l---~~~~~~~l~~~~d~d~dg~i~~~ef~~~  432 (441)
                      +++.|...| +++|+|+..|+..++.+.+.+.   ..+++++++...+.|.+|.|+||||+..
T Consensus        21 l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~   82 (627)
T KOG0046|consen   21 LKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGI   82 (627)
T ss_pred             HHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHH
Confidence            334455555 5555555555555555544322   3455555555555555555555555553

>smart00054 EFh EF-hand, calcium binding motif

Probab=96.53  E-value=0.0032  Score=35.15  Aligned_cols=25  Identities=24%  Similarity=0.385  Sum_probs=14.1

Q ss_pred             HHHHHHhCCCCCCcccHHHHHHHHH
Q psy2947         374 VDAFKAADTTKSGTVPAKYLKHVLV  398 (441)
Q Consensus       374 ~~~f~~~D~~~~G~is~~ef~~~l~  398 (441)
                      +.+|+.+|.+++|.|++.||..+++
T Consensus         3 ~~~f~~~d~~~~g~i~~~e~~~~~~   27 (29)
T smart00054        3 KEAFRLFDKDGDGKIDFEEFKDLLK   27 (29)
T ss_pred             HHHHHHHCCCCCCcEeHHHHHHHHH
Confidence            4455555555555566555555554

EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.46  E-value=0.00095  Score=35.30  Aligned_cols=18  Identities=44%  Similarity=0.722  Sum_probs=8.2

Q ss_pred             CCEEEccCCCCCcCCcCc
Q psy2947          83 VEVLSLKSNSLTSLPPDI  100 (441)
Q Consensus        83 L~~L~l~~n~l~~lp~~~  100 (441)
                      |++|+|++|+|+.+|++|
T Consensus         2 L~~Ldls~n~l~~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSF   19 (22)
T ss_dssp             ESEEEETSSEESEEGTTT
T ss_pred             ccEEECCCCcCEeCChhh
Confidence            444444444444444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.26  E-value=0.0015  Score=34.53  Aligned_cols=16  Identities=38%  Similarity=0.511  Sum_probs=6.9

Q ss_pred             CCEEEccCCCCCccch
Q psy2947         131 LTHLYLDNNLLDALPG  146 (441)
Q Consensus       131 L~~L~l~~n~l~~lp~  146 (441)
                      |++|+|++|+|+.+|.
T Consensus         2 L~~Ldls~n~l~~ip~   17 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPS   17 (22)
T ss_dssp             ESEEEETSSEESEEGT
T ss_pred             ccEEECCCCcCEeCCh
Confidence            3444444444444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4065|consensus

Probab=96.17  E-value=0.011  Score=44.72  Aligned_cols=56  Identities=21%  Similarity=0.364  Sum_probs=34.8

Q ss_pred             HHHhCCCCCCcccHHHHHHHHHHh------C---CCC-CHHH----HHHHHHHhCCCCCCceeHHHHHHH
Q psy2947         377 FKAADTTKSGTVPAKYLKHVLVNW------G---EGL-SSKE----VDQIFREANVTMNSKVRYEDFVKI  432 (441)
Q Consensus       377 f~~~D~~~~G~is~~ef~~~l~~~------~---~~l-~~~~----~~~l~~~~d~d~dg~i~~~ef~~~  432 (441)
                      |.+.|-|+++.++--|+.+++...      |   .++ ++.+    ++.+++.-|.++||.|+|.||...
T Consensus        73 F~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~  142 (144)
T KOG4065|consen   73 FSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR  142 (144)
T ss_pred             hhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence            555566666666666665555431      2   122 3333    445666777889999999999864

>smart00054 EFh EF-hand, calcium binding motif

Probab=96.00  E-value=0.0087  Score=33.23  Aligned_cols=27  Identities=26%  Similarity=0.607  Sum_probs=23.7

Q ss_pred             HHHHHHhhcCCCCCcccHHHHHHHHHh
Q psy2947         336 VVDAFKAADTTKSGKLSFPDFLKVMHT  362 (441)
Q Consensus       336 ~~~~f~~~D~d~~g~i~~~ef~~~~~~  362 (441)
                      ++.+|+.+|.+++|.|++.||..++..
T Consensus         2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~   28 (29)
T smart00054        2 LKEAFRLFDKDGDGKIDFEEFKDLLKA   28 (29)
T ss_pred             HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence            567899999999999999999988764

EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.

>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C

Probab=95.99  E-value=0.016  Score=42.60  Aligned_cols=64  Identities=8%  Similarity=0.222  Sum_probs=51.6

Q ss_pred             HHHHHHHhhcCCCCCcccHHHHHHHHHhhccC-CCChHHHHHHHHHhCCC----CCCcccHHHHHHHHHH
Q psy2947         335 EVVDAFKAADTTKSGKLSFPDFLKVMHTHSKA-EDIPKEVVDAFKAADTT----KSGTVPAKYLKHVLVN  399 (441)
Q Consensus       335 ~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~-~~~~~~~~~~f~~~D~~----~~G~is~~ef~~~l~~  399 (441)
                      ++..+|+.+.. +.+.|+.++|..++...++. ..+.+.+..++..|..+    ..+.+|.++|..+|..
T Consensus         1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S   69 (83)
T PF09279_consen    1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS   69 (83)
T ss_dssp             HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred             CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence            36788888865 78999999999999877666 34578889999888554    4799999999999975

It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....

>KOG2123|consensus

Probab=95.89  E-value=0.00046  Score=61.34  Aligned_cols=80  Identities=28%  Similarity=0.449  Sum_probs=66.7

Q ss_pred             CCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEccCCCCCccc--hhhcCCCCCCEE
Q psy2947          80 CDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALP--GFLLSMPQLDTV  157 (441)
Q Consensus        80 l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~lp--~~~~~l~~L~~L  157 (441)
                      +.+.+.|+.-++.|+.|. -...|+.|+.|.||-|.|+  ++. .+..+++|+.|+|..|.|..+-  .-+.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIs--sL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKIS--SLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccc--cch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            456778888888888442 1457899999999999998  664 5788999999999999998886  567899999999


Q ss_pred             EccCCc
Q psy2947         158 YRHGNH  163 (441)
Q Consensus       158 ~l~~N~  163 (441)
                      .|..|+
T Consensus        94 WL~ENP   99 (388)
T KOG2123|consen   94 WLDENP   99 (388)
T ss_pred             hhccCC
Confidence            999998

>KOG0169|consensus

Probab=95.87  E-value=0.14  Score=52.23  Aligned_cols=123  Identities=20%  Similarity=0.322  Sum_probs=90.1

Q ss_pred             HhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCc
Q psy2947         308 AEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGT  387 (441)
Q Consensus       308 ~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~  387 (441)
                      .+++|.+++.+-..++..... ......+..+|+..|..+++.+...+|..+-......   . ++..+|..+-. +.++
T Consensus       147 ~~~~~~~~~~~~~~~~~~~n~-~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~r---p-ev~~~f~~~s~-~~~~  220 (746)
T KOG0169|consen  147 KNKNGHMSFDEVLDLLKQLNV-QLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKR---P-EVYFLFVQYSH-GKEY  220 (746)
T ss_pred             cccccccchhhHHHHHHHHHH-hhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccC---c-hHHHHHHHHhC-CCCc
Confidence            467788888877777765532 2445667777888888888999999998877766322   2 67778877743 4899


Q ss_pred             ccHHHHHHHHHHhC--CCCCHHHHHHHHHHhCCC----CCCceeHHHHHHHHhcc
Q psy2947         388 VPAKYLKHVLVNWG--EGLSSKEVDQIFREANVT----MNSKVRYEDFVKIACAP  436 (441)
Q Consensus       388 is~~ef~~~l~~~~--~~l~~~~~~~l~~~~d~d----~dg~i~~~ef~~~l~~~  436 (441)
                      ++.+++..++....  ...+.+.++.+++.+..-    ..+.++.+.|.++|...
T Consensus       221 ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S~  275 (746)
T KOG0169|consen  221 LSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFSP  275 (746)
T ss_pred             cCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcCc
Confidence            99999999998754  357788888888887532    34569999999998543

>KOG1029|consensus

Probab=95.75  E-value=0.1  Score=52.77  Aligned_cols=60  Identities=22%  Similarity=0.373  Sum_probs=54.4

Q ss_pred             HHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy2947         372 EVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA  433 (441)
Q Consensus       372 ~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l  433 (441)
                      ..+.+|...|+...|++|-..-+.++..-+  ++..++..|....|.|+||+++.+||+-+|
T Consensus       196 KY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~dEfilam  255 (1118)
T KOG1029|consen  196 KYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSADEFILAM  255 (1118)
T ss_pred             HHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccHHHHHHHH
Confidence            567799999999999999999999997766  888999999999999999999999998765

>KOG2120|consensus

Probab=95.66  E-value=0.00072  Score=60.74  Aligned_cols=134  Identities=16%  Similarity=0.120  Sum_probs=81.0

Q ss_pred             CCCEEEccCCCCC--cCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEccCC-CCCcc--chhhcCCCCCCE
Q psy2947          82 TVEVLSLKSNSLT--SLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNN-LLDAL--PGFLLSMPQLDT  156 (441)
Q Consensus        82 ~L~~L~l~~n~l~--~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~l--p~~~~~l~~L~~  156 (441)
                      .|++||||...|+  .+-.-++.+.+|+.|.+.++++. ..+-..++...+|+.|+|+.+ .|+..  ...+.+++.|..
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~Ld-D~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLD-DPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccC-cHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            4888888888887  44444777888888888888887 455566777888888888854 56543  345677888888


Q ss_pred             EEccCCcCccCcccccccccccccccccchhHHHHhhcccccCCchhhhhhhhccccccccc
Q psy2947         157 VYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEVLRKQKKLHQPSRLQDLAVQSVIASKENF  218 (441)
Q Consensus       157 L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~l~~~~~~~~p~~l~~l~~l~~l~l~~n~  218 (441)
                      |+++-+.+.... ..-....+-+.+..|...... ++-...++..-....+++..|+++.+.
T Consensus       265 LNlsWc~l~~~~-Vtv~V~hise~l~~LNlsG~r-rnl~~sh~~tL~~rcp~l~~LDLSD~v  324 (419)
T KOG2120|consen  265 LNLSWCFLFTEK-VTVAVAHISETLTQLNLSGYR-RNLQKSHLSTLVRRCPNLVHLDLSDSV  324 (419)
T ss_pred             cCchHhhccchh-hhHHHhhhchhhhhhhhhhhH-hhhhhhHHHHHHHhCCceeeecccccc
Confidence            888887753322 111222233333333222111 111112233233567788888888764

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.52  E-value=0.0087  Score=29.29  Aligned_cols=15  Identities=47%  Similarity=0.634  Sum_probs=5.7

Q ss_pred             CCCEEEccCCCCCcC
Q psy2947          82 TVEVLSLKSNSLTSL   96 (441)
Q Consensus        82 ~L~~L~l~~n~l~~l   96 (441)
                      +|+.|+|++|+++.+
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            344455555544443

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.40  E-value=0.0065  Score=54.11  Aligned_cols=103  Identities=22%  Similarity=0.259  Sum_probs=72.4

Q ss_pred             CCcccEEeccCC-------CcC-------cccCCCCCCCEEEccCCCCC-cCCcC----ccCCCCCcEEEccCCcCCCCC
Q psy2947          60 FSHAFLLSLSYT-------PIG-------RRIFKCDTVEVLSLKSNSLT-SLPPD----IGRLTNLRVLCLTDNCLQNAS  120 (441)
Q Consensus        60 l~~L~~l~l~~n-------~i~-------~~~~~l~~L~~L~l~~n~l~-~lp~~----~~~l~~L~~L~l~~n~l~~~~  120 (441)
                      -.+|+..+++.-       .++       +.+.+|++|+..+||.|-+. ..|+.    +++-+.|.+|.+++|.+-  .
T Consensus        57 ~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG--p  134 (388)
T COG5238          57 VRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG--P  134 (388)
T ss_pred             hcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC--c
Confidence            456777777654       233       45667899999999999888 45543    777888999999999874  3


Q ss_pred             Cch-----hh---------hcCCCCCEEEccCCCCCccc-----hhhcCCCCCCEEEccCCcC
Q psy2947         121 IPF-----TL---------TFCKNLTHLYLDNNLLDALP-----GFLLSMPQLDTVYRHGNHN  164 (441)
Q Consensus       121 ~p~-----~~---------~~l~~L~~L~l~~n~l~~lp-----~~~~~l~~L~~L~l~~N~~  164 (441)
                      +..     .+         .+-+.|+..+...|++..-|     ..+.....|+.+.+..|.+
T Consensus       135 ~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgI  197 (388)
T COG5238         135 IAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGI  197 (388)
T ss_pred             cchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCc
Confidence            322     11         23467899999999886555     2334446788888888886

>KOG0473|consensus

Probab=95.37  E-value=0.00036  Score=60.37  Aligned_cols=82  Identities=16%  Similarity=0.094  Sum_probs=73.1

Q ss_pred             CCCcccEEeccCCC---cCcccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEE
Q psy2947          59 YFSHAFLLSLSYTP---IGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLY  135 (441)
Q Consensus        59 ~l~~L~~l~l~~n~---i~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~  135 (441)
                      .+...+.||++.|.   +...+..++.|..|+++.|++..+|..++++..++.+++..|.++  ..|.+++.++.+++++
T Consensus        40 ~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~--~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHS--QQPKSQKKEPHPKKNE  117 (326)
T ss_pred             ccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchh--hCCccccccCCcchhh
Confidence            36788999999994   456666778899999999999999999999999999999999998  9999999999999999


Q ss_pred             ccCCCCC
Q psy2947         136 LDNNLLD  142 (441)
Q Consensus       136 l~~n~l~  142 (441)
                      +-.|.+.
T Consensus       118 ~k~~~~~  124 (326)
T KOG0473|consen  118 QKKTEFF  124 (326)
T ss_pred             hccCcch
Confidence            9998864

>KOG2120|consensus

Probab=95.25  E-value=0.0013  Score=59.14  Aligned_cols=79  Identities=27%  Similarity=0.308  Sum_probs=53.6

Q ss_pred             CcccEEeccCCCcC-----cccCCCCCCCEEEccCCCCC-cCCcCccCCCCCcEEEccCCc-CCCCCCch--hhhcCCCC
Q psy2947          61 SHAFLLSLSYTPIG-----RRIFKCDTVEVLSLKSNSLT-SLPPDIGRLTNLRVLCLTDNC-LQNASIPF--TLTFCKNL  131 (441)
Q Consensus        61 ~~L~~l~l~~n~i~-----~~~~~l~~L~~L~l~~n~l~-~lp~~~~~l~~L~~L~l~~n~-l~~~~~p~--~~~~l~~L  131 (441)
                      +.|++||||...|.     .-+..+..|+.|.|.++++. .+-..+..-.+|+.|+++.+. ++  ....  -+.+++.|
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t--~n~~~ll~~scs~L  262 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFT--ENALQLLLSSCSRL  262 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccc--hhHHHHHHHhhhhH
Confidence            46899999988554     33456778888888888877 555567777788888887643 43  2111  23667777


Q ss_pred             CEEEccCCCC
Q psy2947         132 THLYLDNNLL  141 (441)
Q Consensus       132 ~~L~l~~n~l  141 (441)
                      ..|+|+++.+
T Consensus       263 ~~LNlsWc~l  272 (419)
T KOG2120|consen  263 DELNLSWCFL  272 (419)
T ss_pred             hhcCchHhhc
Confidence            7777777765

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.22  E-value=0.012  Score=28.76  Aligned_cols=12  Identities=50%  Similarity=0.634  Sum_probs=3.9

Q ss_pred             CcEEEccCCcCC
Q psy2947         106 LRVLCLTDNCLQ  117 (441)
Q Consensus       106 L~~L~l~~n~l~  117 (441)
                      |+.|++++|+++
T Consensus         3 L~~L~l~~n~L~   14 (17)
T PF13504_consen    3 LRTLDLSNNRLT   14 (17)
T ss_dssp             -SEEEETSS--S
T ss_pred             cCEEECCCCCCC
Confidence            444444444443

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.13  E-value=0.066  Score=42.82  Aligned_cols=95  Identities=19%  Similarity=0.344  Sum_probs=41.9

Q ss_pred             CcccEEeccCC--CcCc-ccCCCCCCCEEEccCCCCCcCCcC-ccCCCCCcEEEccCCcCCCCCCch-hhhcCCCCCEEE
Q psy2947          61 SHAFLLSLSYT--PIGR-RIFKCDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPF-TLTFCKNLTHLY  135 (441)
Q Consensus        61 ~~L~~l~l~~n--~i~~-~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~p~-~~~~l~~L~~L~  135 (441)
                      ++|+.+.+..+  .|+. .+..+++|+.+.+..+ +..++.. |..+.+|+.+.+.. .+.  .++. .+..+.+|+.+.
T Consensus        12 ~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~--~i~~~~F~~~~~l~~i~   87 (129)
T PF13306_consen   12 SNLESITFPNTIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK--SIGDNAFSNCTNLKNID   87 (129)
T ss_dssp             TT--EEEETST--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT---EE-TTTTTT-TTECEEE
T ss_pred             CCCCEEEECCCeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc--ccccccccccccccccc
Confidence            34455555433  2332 3444556667766654 5555554 55665667776654 332  3333 335566666666


Q ss_pred             ccCCCCCccc-hhhcCCCCCCEEEccC
Q psy2947         136 LDNNLLDALP-GFLLSMPQLDTVYRHG  161 (441)
Q Consensus       136 l~~n~l~~lp-~~~~~l~~L~~L~l~~  161 (441)
                      +..+ +..++ ..|.++ .|+.+.+..
T Consensus        88 ~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   88 IPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             ETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             cCcc-ccEEchhhhcCC-CceEEEECC
Confidence            6554 55554 344444 666666554

>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin

Probab=94.91  E-value=0.41  Score=39.80  Aligned_cols=62  Identities=15%  Similarity=0.136  Sum_probs=47.2

Q ss_pred             hHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCC-------CCHHHHHHHHHHhCCCCCCceeHHHHHHH
Q psy2947         370 PKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEG-------LSSKEVDQIFREANVTMNSKVRYEDFVKI  432 (441)
Q Consensus       370 ~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~-------l~~~~~~~l~~~~d~d~dg~i~~~ef~~~  432 (441)
                      .+.++++|..+++.+.+.+|..|+.++++.-...       ...-|+..+...+ .|.||.+..|....+
T Consensus        95 p~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~v  163 (174)
T PF05042_consen   95 PQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGV  163 (174)
T ss_pred             HHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhh
Confidence            4689999999999999999999999999874322       2345555566555 678999988876544

Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.

>KOG0046|consensus

Probab=94.88  E-value=0.097  Score=50.72  Aligned_cols=65  Identities=12%  Similarity=0.233  Sum_probs=52.4

Q ss_pred             HHHHHHHhhcCCCCCcccHHHHHHHHHhhcc--CCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         335 EVVDAFKAADTTKSGKLSFPDFLKVMHTHSK--AEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       335 ~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~--~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      .+++.|...| |++|+|+..|...++.....  +...+++++++....+.|.+|.|++|||..++..+
T Consensus        20 ~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l   86 (627)
T KOG0046|consen   20 ELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL   86 (627)
T ss_pred             HHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence            3566788889 99999999999988876532  22336789999999999999999999999987654

>KOG0169|consensus

Probab=94.69  E-value=0.22  Score=50.78  Aligned_cols=97  Identities=16%  Similarity=0.267  Sum_probs=77.4

Q ss_pred             HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHH
Q psy2947         333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQI  412 (441)
Q Consensus       333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l  412 (441)
                      ..-+..+|+..|.+.+|.+++.+...++..+. -......++..|+..|...+|.+..++++++......+.   ++..+
T Consensus       135 ~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n-~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~~  210 (746)
T KOG0169|consen  135 EHWIHSIFQEADKNKNGHMSFDEVLDLLKQLN-VQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVYFL  210 (746)
T ss_pred             HHHHHHHHHHHccccccccchhhHHHHHHHHH-HhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---hHHHH
Confidence            34567789999999999999999988877652 222345677889999999999999999999998876443   67788


Q ss_pred             HHHhCCCCCCceeHHHHHHHHh
Q psy2947         413 FREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       413 ~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      |..+- ++.+.++.+++.+++.
T Consensus       211 f~~~s-~~~~~ls~~~L~~Fl~  231 (746)
T KOG0169|consen  211 FVQYS-HGKEYLSTDDLLRFLE  231 (746)
T ss_pred             HHHHh-CCCCccCHHHHHHHHH
Confidence            88875 4478889888888875

>KOG3555|consensus

Probab=94.68  E-value=0.071  Score=48.76  Aligned_cols=63  Identities=14%  Similarity=0.087  Sum_probs=35.0

Q ss_pred             HHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhC
Q psy2947         334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWG  401 (441)
Q Consensus       334 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~  401 (441)
                      ..+..||..+|.|.||.++..|+..+-...     .+.-++..|...|...||.|+-.|.-.-+..-+
T Consensus       250 ds~gWMFnklD~N~Dl~Ld~sEl~~I~ldk-----nE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~  312 (434)
T KOG3555|consen  250 DSLGWMFNKLDTNYDLLLDQSELRAIELDK-----NEACIKPFFNSCDTYKDGSISTNEWCYCFQKSD  312 (434)
T ss_pred             hhhhhhhhccccccccccCHHHhhhhhccC-----chhHHHHHHhhhcccccCccccchhhhhhccCC
Confidence            455666666666666666666655433221     133455566666666666666666655555444

>PLN02952 phosphoinositide phospholipase C

Probab=94.51  E-value=0.34  Score=49.12  Aligned_cols=57  Identities=14%  Similarity=0.260  Sum_probs=31.3

Q ss_pred             hCCCcccHHHHHHHHHhhcCC-CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccC
Q psy2947         309 EKGGKLSFPDFLKVMHTHSKA-EDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKA  366 (441)
Q Consensus       309 ~~~g~i~~~ef~~~~~~~~~~-~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~  366 (441)
                      ++.|.++|++|..+.+.+... .....++..+|..+-.++ +.++.++|..++...++.
T Consensus        12 ~~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~e   69 (599)
T PLN02952         12 NDSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQDE   69 (599)
T ss_pred             ccCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCC
Confidence            445666666666665544321 224556666666664332 456666666666655443

>KOG4065|consensus

Probab=94.17  E-value=0.052  Score=41.29  Aligned_cols=59  Identities=15%  Similarity=0.155  Sum_probs=41.8

Q ss_pred             HHHHhhcCCCCCcccHHHHHHHHHhhcc----CC-----CChHH----HHHHHHHhCCCCCCcccHHHHHHH
Q psy2947         338 DAFKAADTTKSGKLSFPDFLKVMHTHSK----AE-----DIPKE----VVDAFKAADTTKSGTVPAKYLKHV  396 (441)
Q Consensus       338 ~~f~~~D~d~~g~i~~~ef~~~~~~~~~----~~-----~~~~~----~~~~f~~~D~~~~G~is~~ef~~~  396 (441)
                      .-|.+.|.|+++.++--|+..++.....    +.     ..+.+    |..+.+--|.++||+|++.||.+.
T Consensus        71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~  142 (144)
T KOG4065|consen   71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR  142 (144)
T ss_pred             hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence            3478899999999999998887764322    00     11233    444556668999999999999764

>KOG3555|consensus

Probab=93.79  E-value=0.27  Score=45.08  Aligned_cols=64  Identities=8%  Similarity=0.079  Sum_probs=54.3

Q ss_pred             hHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhccC
Q psy2947         370 PKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAPV  437 (441)
Q Consensus       370 ~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~~~  437 (441)
                      ...+.-||...|.+.||.++..|++.+-..    -.+..++.+|...|...||.|+-.|+..+..++-
T Consensus       249 Kds~gWMFnklD~N~Dl~Ld~sEl~~I~ld----knE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~  312 (434)
T KOG3555|consen  249 KDSLGWMFNKLDTNYDLLLDQSELRAIELD----KNEACIKPFFNSCDTYKDGSISTNEWCYCFQKSD  312 (434)
T ss_pred             hhhhhhhhhccccccccccCHHHhhhhhcc----CchhHHHHHHhhhcccccCccccchhhhhhccCC
Confidence            356778999999999999999999888654    3456789999999999999999999998876653

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=93.75  E-value=0.18  Score=40.25  Aligned_cols=82  Identities=18%  Similarity=0.386  Sum_probs=51.9

Q ss_pred             ccCCCCCCCEEEccCCCCCcCCcC-ccCCCCCcEEEccCCcCCCCCCch-hhhcCCCCCEEEccCCCCCccc-hhhcCCC
Q psy2947          76 RIFKCDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPF-TLTFCKNLTHLYLDNNLLDALP-GFLLSMP  152 (441)
Q Consensus        76 ~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~p~-~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~  152 (441)
                      .+..+++|+.+.+.. .+..++.. |..+++|+.+.+..+ +.  .++. .+.++.+|+.+.+.. .+..++ ..|..++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~--~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~   81 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT--SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT   81 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS--CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc--ccceeeeecccccccccccc-cccccccccccccc
Confidence            355677899999885 67778776 888889999999886 65  5665 457777899999965 666666 5666789


Q ss_pred             CCCEEEccCC
Q psy2947         153 QLDTVYRHGN  162 (441)
Q Consensus       153 ~L~~L~l~~N  162 (441)
                      +|+.+.+..+
T Consensus        82 ~l~~i~~~~~   91 (129)
T PF13306_consen   82 NLKNIDIPSN   91 (129)
T ss_dssp             TECEEEETTT
T ss_pred             cccccccCcc
Confidence            9999988765

>PLN02952 phosphoinositide phospholipase C

Probab=93.69  E-value=0.62  Score=47.33  Aligned_cols=88  Identities=20%  Similarity=0.270  Sum_probs=56.4

Q ss_pred             CCCcccHHHHHHHHHhhcc-CCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhC-C-CCCHHHHHHHHHHh----C--
Q psy2947         347 KSGKLSFPDFLKVMHTHSK-AEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWG-E-GLSSKEVDQIFREA----N--  417 (441)
Q Consensus       347 ~~g~i~~~ef~~~~~~~~~-~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~-~-~l~~~~~~~l~~~~----d--  417 (441)
                      +.|.+++++|..+.+.+.. ......++..+|..+-. +.+.|+.++|..++.... . ..+.++++.++..+    .  
T Consensus        13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~   91 (599)
T PLN02952         13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV   91 (599)
T ss_pred             cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence            3578888888777666532 22246778888888843 446788888888887743 2 35666666665433    1  


Q ss_pred             -CCCCCceeHHHHHHHHhc
Q psy2947         418 -VTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       418 -~d~dg~i~~~ef~~~l~~  435 (441)
                       ..+.+.++++.|..+|..
T Consensus        92 ~~~~~~~l~~~~F~~~l~s  110 (599)
T PLN02952         92 TRYTRHGLNLDDFFHFLLY  110 (599)
T ss_pred             ccccccCcCHHHHHHHHcC
Confidence             112345788888888754

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.27  E-value=0.085  Score=28.94  Aligned_cols=17  Identities=53%  Similarity=0.712  Sum_probs=9.9

Q ss_pred             CCCCEEEccCCCCCccc
Q psy2947         129 KNLTHLYLDNNLLDALP  145 (441)
Q Consensus       129 ~~L~~L~l~~n~l~~lp  145 (441)
                      ++|++|+|++|+|..+|
T Consensus         2 ~~L~~L~L~~N~l~~lp   18 (26)
T smart00370        2 PNLRELDLSNNQLSSLP   18 (26)
T ss_pred             CCCCEEECCCCcCCcCC
Confidence            45555666666665555

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.27  E-value=0.085  Score=28.94  Aligned_cols=17  Identities=53%  Similarity=0.712  Sum_probs=9.9

Q ss_pred             CCCCEEEccCCCCCccc
Q psy2947         129 KNLTHLYLDNNLLDALP  145 (441)
Q Consensus       129 ~~L~~L~l~~n~l~~lp  145 (441)
                      ++|++|+|++|+|..+|
T Consensus         2 ~~L~~L~L~~N~l~~lp   18 (26)
T smart00369        2 PNLRELDLSNNQLSSLP   18 (26)
T ss_pred             CCCCEEECCCCcCCcCC
Confidence            45555666666665555

>KOG4578|consensus

Probab=92.99  E-value=0.068  Score=48.53  Aligned_cols=65  Identities=15%  Similarity=0.070  Sum_probs=51.7

Q ss_pred             HHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         335 EVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       335 ~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      .+..-|.++|.|.++.|+..|++-+=..+........-.+.+|++.|.|+|..|++.|++.-+..
T Consensus       334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~  398 (421)
T KOG4578|consen  334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV  398 (421)
T ss_pred             eeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence            35566899999999999999877655555444555566778999999999999999999888754

>KOG2243|consensus

Probab=92.74  E-value=0.17  Score=54.11  Aligned_cols=60  Identities=25%  Similarity=0.380  Sum_probs=51.5

Q ss_pred             HHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhcc
Q psy2947         376 AFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAP  436 (441)
Q Consensus       376 ~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~~  436 (441)
                      .|+.+|+||.|.|+..||.++|.... .-++.+++.++.-...|.+...+|++|+.-.-.+
T Consensus      4062 tfkeydpdgkgiiskkdf~kame~~k-~ytqse~dfllscae~dend~~~y~dfv~rfhep 4121 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGHK-HYTQSEIDFLLSCAEADENDMFDYEDFVDRFHEP 4121 (5019)
T ss_pred             cchhcCCCCCccccHHHHHHHHhccc-cchhHHHHHHHHhhccCccccccHHHHHHHhcCc
Confidence            47889999999999999999997643 4688899999999989999999999999765433

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.52  E-value=0.13  Score=28.24  Aligned_cols=20  Identities=50%  Similarity=0.609  Sum_probs=12.3

Q ss_pred             CCCCcEEEccCCcCCCCCCchh
Q psy2947         103 LTNLRVLCLTDNCLQNASIPFT  124 (441)
Q Consensus       103 l~~L~~L~l~~n~l~~~~~p~~  124 (441)
                      +++|+.|+|++|+|+  .+|..
T Consensus         1 L~~L~~L~L~~N~l~--~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLS--SLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCC--cCCHH
Confidence            355666666666666  56654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.52  E-value=0.13  Score=28.24  Aligned_cols=20  Identities=50%  Similarity=0.609  Sum_probs=12.3

Q ss_pred             CCCCcEEEccCCcCCCCCCchh
Q psy2947         103 LTNLRVLCLTDNCLQNASIPFT  124 (441)
Q Consensus       103 l~~L~~L~l~~n~l~~~~~p~~  124 (441)
                      +++|+.|+|++|+|+  .+|..
T Consensus         1 L~~L~~L~L~~N~l~--~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLS--SLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCC--cCCHH
Confidence            355666666666666  56654

>KOG4347|consensus

Probab=91.69  E-value=0.69  Score=46.36  Aligned_cols=78  Identities=15%  Similarity=0.220  Sum_probs=55.2

Q ss_pred             ccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHH
Q psy2947         314 LSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYL  393 (441)
Q Consensus       314 i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef  393 (441)
                      +.++.|..++.....-..+......+|+.+|.+++|.+++.+|...+..+..+ ..-+.+.-+|+.+|.+++ ....+|.
T Consensus       535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~-~~~ek~~l~y~lh~~p~~-~~d~e~~  612 (671)
T KOG4347|consen  535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAG-DALEKLKLLYKLHDPPAD-ELDREEV  612 (671)
T ss_pred             HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhh-hHHHHHHHHHhhccCCcc-ccccccc
Confidence            33444444444333333344567888999999999999999999888776333 234677888999999999 8888887

>TIGR00864 PCC polycystin cation channel protein

Probab=90.77  E-value=0.13  Score=60.05  Aligned_cols=43  Identities=14%  Similarity=0.121  Sum_probs=36.9

Q ss_pred             EccCCCCCccc-hhhcCCCCCCEEEccCCcCccCcccccccccc
Q psy2947         135 YLDNNLLDALP-GFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDI  177 (441)
Q Consensus       135 ~l~~n~l~~lp-~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~  177 (441)
                      ||++|+|+.|| ..|..+++|+.|+|++|++.|.|.+.|+...+
T Consensus         1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL   44 (2740)
T TIGR00864         1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWA   44 (2740)
T ss_pred             CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHH
Confidence            58899999998 67888999999999999999999988754433

Note: this model has been restricted to the amino half because for technical reasons.

>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []

Probab=90.58  E-value=1.4  Score=36.62  Aligned_cols=56  Identities=9%  Similarity=0.133  Sum_probs=28.9

Q ss_pred             cCCCCCcccHHHHHHHHHhhc--cCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         344 DTTKSGKLSFPDFLKVMHTHS--KAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       344 D~d~~g~i~~~ef~~~~~~~~--~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      ...+...++-..|..+++...  ........+..+|..+-..+...|++++|..+|..
T Consensus        12 G~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~   69 (154)
T PF05517_consen   12 GKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAE   69 (154)
T ss_dssp             STSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHH
T ss_pred             cCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHH
Confidence            334445566666666665432  22333455666666654444555666666666644

It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.

>KOG3866|consensus

Probab=90.49  E-value=0.6  Score=42.22  Aligned_cols=84  Identities=11%  Similarity=0.158  Sum_probs=55.5

Q ss_pred             cHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh-----CCCCCHHHH-----------HHHHHH
Q psy2947         352 SFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW-----GEGLSSKEV-----------DQIFRE  415 (441)
Q Consensus       352 ~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~-----~~~l~~~~~-----------~~l~~~  415 (441)
                      +.+.++.+|...-+-....-.=+..|...|.++||.++-.|+...+..-     ...=.++++           +.+++.
T Consensus       225 SkdQLkEVWEE~DgLdpn~fdPKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~  304 (442)
T KOG3866|consen  225 SKDQLKEVWEESDGLDPNQFDPKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQ  304 (442)
T ss_pred             cHHHHHHHHHHhcCCCcccCCcchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHh
Confidence            4566666665542222111233567888899999999999988887641     111122222           258889


Q ss_pred             hCCCCCCceeHHHHHHHHhc
Q psy2947         416 ANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       416 ~d~d~dg~i~~~ef~~~l~~  435 (441)
                      +|.+.|..|+.+||+..-.+
T Consensus       305 vDtNqDRlvtleEFL~~t~~  324 (442)
T KOG3866|consen  305 VDTNQDRLVTLEEFLNDTDN  324 (442)
T ss_pred             cccchhhhhhHHHHHhhhhh
Confidence            99999999999999987643

>KOG0035|consensus

Probab=89.96  E-value=0.67  Score=48.64  Aligned_cols=68  Identities=15%  Similarity=0.147  Sum_probs=46.1

Q ss_pred             HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCH-----HHHHHHHHHhCCCCCCceeHHHHHHHHhccCC
Q psy2947         371 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSS-----KEVDQIFREANVTMNSKVRYEDFVKIACAPVP  438 (441)
Q Consensus       371 ~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~-----~~~~~l~~~~d~d~dg~i~~~ef~~~l~~~~~  438 (441)
                      .++++.|..+|+...|.++.++|.+.+..+|....+     +++..++...|.+.-|++++.+|...|.+.+.
T Consensus       747 ~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e  819 (890)
T KOG0035|consen  747 DELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYE  819 (890)
T ss_pred             HHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhh
Confidence            466777888888778888888888888777765543     22334555555555577888888887776543

>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes

Probab=89.34  E-value=0.17  Score=35.30  Aligned_cols=57  Identities=18%  Similarity=0.217  Sum_probs=40.6

Q ss_pred             ChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCC--CC-----CCceeHHHHHHHH
Q psy2947         369 IPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANV--TM-----NSKVRYEDFVKIA  433 (441)
Q Consensus       369 ~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~--d~-----dg~i~~~ef~~~l  433 (441)
                      +.+.+.+.|+.. .++.++||.+|+++.+..       ++++-++.++..  +.     .|..+|..|++.|
T Consensus         4 s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~p-------e~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~l   67 (69)
T PF08726_consen    4 SAEQVEEAFRAL-AGGKPYVTEEDLRRSLTP-------EQAEYCISRMPPYEGPDGDAIPGAYDYESFTNSL   67 (69)
T ss_dssp             TCHHHHHHHHHH-CTSSSCEEHHHHHHHS-C-------CCHHHHHCCSEC--SSS----TTEEECHHHHCCC
T ss_pred             CHHHHHHHHHHH-HcCCCcccHHHHHHHcCc-------HHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHHH
Confidence            457889999999 788899999999998743       233555555542  11     2679999887643

EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=89.11  E-value=0.27  Score=26.92  Aligned_cols=17  Identities=41%  Similarity=0.669  Sum_probs=10.5

Q ss_pred             CCCEEEccCCCCCcCCc
Q psy2947          82 TVEVLSLKSNSLTSLPP   98 (441)
Q Consensus        82 ~L~~L~l~~n~l~~lp~   98 (441)
                      +|+.|++++|+++.+|.
T Consensus         3 ~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLTSLPE   19 (26)
T ss_pred             ccceeecCCCccccCcc
Confidence            45666666666666654

>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin

Probab=88.92  E-value=2.2  Score=35.62  Aligned_cols=132  Identities=16%  Similarity=0.217  Sum_probs=78.8

Q ss_pred             hHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHHh-------CCCcccHHHHHHHHHh----hcC---
Q psy2947         265 YLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE-------KGGKLSFPDFLKVMHT----HSK---  328 (441)
Q Consensus       265 ~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~-------~~g~i~~~ef~~~~~~----~~~---  328 (441)
                      ...+++-...+|+|  |-| .+.|-=..++.+|....-..+..++-+       ..+-+.-.-|.-.+..    +.+   
T Consensus         6 ~T~LQqHvaFFDrd~DGiI-~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDS   84 (174)
T PF05042_consen    6 MTVLQQHVAFFDRDKDGII-YPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDS   84 (174)
T ss_pred             ccHHhhhhceeCCCCCeeE-CHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCc
Confidence            34455555666764  888 777777778888876544444333321       1111111111100110    000   


Q ss_pred             ------CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCC------hHHHHHHHHHhCCCCCCcccHHHHHHH
Q psy2947         329 ------AEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDI------PKEVVDAFKAADTTKSGTVPAKYLKHV  396 (441)
Q Consensus       329 ------~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~------~~~~~~~f~~~D~~~~G~is~~ef~~~  396 (441)
                            ..-..++..++|..++..+.+.++..|+.++++......+.      .-++..++... .+.+|.+..|+++.+
T Consensus        85 g~YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~v  163 (174)
T PF05042_consen   85 GAYDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGV  163 (174)
T ss_pred             cccccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhh
Confidence                  11235789999999999999999999999999875322211      12455556555 678999999999887


Q ss_pred             HH
Q psy2947         397 LV  398 (441)
Q Consensus       397 l~  398 (441)
                      .-
T Consensus       164 YD  165 (174)
T PF05042_consen  164 YD  165 (174)
T ss_pred             cc
Confidence            63

Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.

>KOG0042|consensus

Probab=88.49  E-value=0.9  Score=44.89  Aligned_cols=63  Identities=19%  Similarity=0.247  Sum_probs=56.9

Q ss_pred             HHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         373 VVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       373 ~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      .+..|..+|.|+.|+++.++..+.|+..+...+++.+..++.+.|...+|.+..+||.+.+..
T Consensus       595 ~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~  657 (680)
T KOG0042|consen  595 RKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSA  657 (680)
T ss_pred             HHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHH
Confidence            446799999999999999999999999888899999999999999888999999999888753

>KOG1707|consensus

Probab=87.21  E-value=3.2  Score=41.47  Aligned_cols=166  Identities=14%  Similarity=0.106  Sum_probs=92.6

Q ss_pred             ceecccchHHHHHhhhccccC--CCccCHHHHHHH-HHHcCCCcCHHHHHHHH---Hh------CCCcccHHHHHHHHHh
Q psy2947         258 VFTFKTPYLEFRECFFLFARN--GTIKTLDELSVI-MRSLGMSPTIAELKKYL---AE------KGGKLSFPDFLKVMHT  325 (441)
Q Consensus       258 ~~l~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~-~~~~~~~~~~~~~~~~~---~~------~~g~i~~~ef~~~~~~  325 (441)
                      ..+.+.-+..+.++|...|.+  |.+ +-.|+-.+ ..-++......+++.+.   ++      .++.++..-|..+-..
T Consensus       187 qelkp~~v~al~RIFki~D~d~D~~L-sd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~l  265 (625)
T KOG1707|consen  187 QELKPRCVKALKRIFKISDSDNDGAL-SDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTL  265 (625)
T ss_pred             ccccHHHHHHHHHHHhhhcccccccc-chhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHH
Confidence            345677788999999888875  777 55666444 44456555555555433   22      2456777777776554


Q ss_pred             hcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhc-----cCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         326 HSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHS-----KAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       326 ~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~-----~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      +.... -.+....+.+.|..+.+-.++-+=...-+..--     .....-+.+..+|..||.|+||.++.+|+..++...
T Consensus       266 fierg-r~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~  344 (625)
T KOG1707|consen  266 FIERG-RHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTA  344 (625)
T ss_pred             HHHhc-cccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhC
Confidence            43322 223334445555444333222111110000000     001112467889999999999999999999999876


Q ss_pred             CCCC----CHHHHHHHHHHhCCCCCCceeHHHHHH
Q psy2947         401 GEGL----SSKEVDQIFREANVTMNSKVRYEDFVK  431 (441)
Q Consensus       401 ~~~l----~~~~~~~l~~~~d~d~dg~i~~~ef~~  431 (441)
                      ....    ...+.-.      .+..|.++++-|..
T Consensus       345 P~~pW~~~~~~~~t~------~~~~G~ltl~g~l~  373 (625)
T KOG1707|consen  345 PGSPWTSSPYKDSTV------KNERGWLTLNGFLS  373 (625)
T ss_pred             CCCCCCCCcccccce------ecccceeehhhHHH
Confidence            4221    1111100      12468888887764

>KOG3866|consensus

Probab=87.16  E-value=1.8  Score=39.25  Aligned_cols=84  Identities=12%  Similarity=0.084  Sum_probs=53.9

Q ss_pred             cHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhc----cCCCChHHH-----------HHHHHH
Q psy2947         315 SFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHS----KAEDIPKEV-----------VDAFKA  379 (441)
Q Consensus       315 ~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~----~~~~~~~~~-----------~~~f~~  379 (441)
                      |-+.+.+++....+-.+....-+.-|..+|.|+||.++-.|+.+++....    .....++++           +-+.+.
T Consensus       225 SkdQLkEVWEE~DgLdpn~fdPKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~  304 (442)
T KOG3866|consen  225 SKDQLKEVWEESDGLDPNQFDPKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQ  304 (442)
T ss_pred             cHHHHHHHHHHhcCCCcccCCcchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHh
Confidence            34555555554444333444456668889999999999999887665322    111111111           124677


Q ss_pred             hCCCCCCcccHHHHHHHHH
Q psy2947         380 ADTTKSGTVPAKYLKHVLV  398 (441)
Q Consensus       380 ~D~~~~G~is~~ef~~~l~  398 (441)
                      .|++.|..||.+||-+.-.
T Consensus       305 vDtNqDRlvtleEFL~~t~  323 (442)
T KOG3866|consen  305 VDTNQDRLVTLEEFLNDTD  323 (442)
T ss_pred             cccchhhhhhHHHHHhhhh
Confidence            8999999999999976654

>KOG1265|consensus

Probab=86.25  E-value=7.6  Score=40.77  Aligned_cols=66  Identities=11%  Similarity=0.168  Sum_probs=47.9

Q ss_pred             hHHHHHHHHHhCCCCCCcccHHHHHHHHHHh----------CCCCCHHHHHHHHHHhCCCC----CCceeHHHHHHHHhc
Q psy2947         370 PKEVVDAFKAADTTKSGTVPAKYLKHVLVNW----------GEGLSSKEVDQIFREANVTM----NSKVRYEDFVKIACA  435 (441)
Q Consensus       370 ~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~----------~~~l~~~~~~~l~~~~d~d~----dg~i~~~ef~~~l~~  435 (441)
                      ..+++++|..+..++.-++|.++|..++..-          -.++..+.+..+++.+..++    +|+++-+-|++++..
T Consensus       220 R~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~g  299 (1189)
T KOG1265|consen  220 RPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMG  299 (1189)
T ss_pred             chhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhC
Confidence            3567888888877777888888888888642          13456777888888887654    477888888877643

>KOG4578|consensus

Probab=85.78  E-value=0.94  Score=41.41  Aligned_cols=62  Identities=15%  Similarity=0.211  Sum_probs=48.7

Q ss_pred             HHHHHHHhCCCCCCcccHHHH---HHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhcc
Q psy2947         373 VVDAFKAADTTKSGTVPAKYL---KHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAP  436 (441)
Q Consensus       373 ~~~~f~~~D~~~~G~is~~ef---~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~~  436 (441)
                      +.--|...|.|.++.|...|+   +.++.+..  -.....+.+++-.|-|+|.+|+++|+..++...
T Consensus       335 v~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s--~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~  399 (421)
T KOG4578|consen  335 VHWYFNQLDKNSNNDIERREWKPFKRVLLKKS--KPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVE  399 (421)
T ss_pred             eeeeeeeecccccCccchhhcchHHHHHHhhc--cHHHHhhhcchhcccCCCceecHHHHhhhhccc
Confidence            344599999999999999995   44554432  234567789999999999999999999988543

>KOG4347|consensus

Probab=84.29  E-value=1.6  Score=43.97  Aligned_cols=78  Identities=14%  Similarity=0.180  Sum_probs=54.3

Q ss_pred             ccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHH
Q psy2947         351 LSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDF  429 (441)
Q Consensus       351 i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef  429 (441)
                      |+++.|...+..+..-......+..+|+.+|.+++|.|++.+|+..+..+...-..+.+.-+++.+|.+++ ..+.+|-
T Consensus       535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~  612 (671)
T KOG4347|consen  535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV  612 (671)
T ss_pred             HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence            45555555555442222223456778999999999999999999999876544455667788888888877 6665543

>KOG1955|consensus

Probab=84.00  E-value=2.6  Score=40.89  Aligned_cols=60  Identities=13%  Similarity=0.190  Sum_probs=46.4

Q ss_pred             HHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy2947         336 VVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLV  398 (441)
Q Consensus       336 ~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~  398 (441)
                      ...-|+.+..|-+|.|+-.--+.++.   +....-+++.-+|+..|.|+||.++..||..+|.
T Consensus       233 YvnQFrtvQpDp~gfisGsaAknFFt---KSklpi~ELshIWeLsD~d~DGALtL~EFcAAfH  292 (737)
T KOG1955|consen  233 YVNQFRTVQPDPHGFISGSAAKNFFT---KSKLPIEELSHIWELSDVDRDGALTLSEFCAAFH  292 (737)
T ss_pred             HHhhhhcccCCcccccccHHHHhhhh---hccCchHHHHHHHhhcccCccccccHHHHHhhHh
Confidence            44557778888889887655444443   2344467889999999999999999999999986

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=83.52  E-value=0.98  Score=24.81  Aligned_cols=16  Identities=31%  Similarity=0.459  Sum_probs=7.9

Q ss_pred             CCCCEEEccCCCCCcc
Q psy2947         129 KNLTHLYLDNNLLDAL  144 (441)
Q Consensus       129 ~~L~~L~l~~n~l~~l  144 (441)
                      .+|+.|+|+.|+|..+
T Consensus         2 ~~L~~L~L~~NkI~~I   17 (26)
T smart00365        2 TNLEELDLSQNKIKKI   17 (26)
T ss_pred             CccCEEECCCCcccee
Confidence            3455555555555433

>KOG1955|consensus

Probab=82.91  E-value=2.9  Score=40.53  Aligned_cols=61  Identities=15%  Similarity=0.290  Sum_probs=53.3

Q ss_pred             HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy2947         371 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA  433 (441)
Q Consensus       371 ~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l  433 (441)
                      +....-|+..-.|-.|.|+-.--+.++.+-.  ++-+++..|+...|-|.||-++..||+.++
T Consensus       231 eYYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAf  291 (737)
T KOG1955|consen  231 EYYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAF  291 (737)
T ss_pred             HHHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhH
Confidence            3444568888999999999999999998765  677899999999999999999999999877

>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions

Probab=82.88  E-value=9.7  Score=28.24  Aligned_cols=28  Identities=11%  Similarity=0.150  Sum_probs=15.7

Q ss_pred             HHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q psy2947         334 KEVVDAFKAADTTKSGKLSFPDFLKVMHT  362 (441)
Q Consensus       334 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~~  362 (441)
                      ++.+.+|+.+ .|.+|.++...|..+++.
T Consensus         3 dKyRylFsli-sd~~g~~~~~~l~~lL~d   30 (90)
T PF09069_consen    3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHD   30 (90)
T ss_dssp             HHHHHHHHHH-S-TTS-B-HHHHHHHHHH
T ss_pred             HHHHHHHHHH-cCCCCCCcHHHHHHHHHH
Confidence            4566666666 466677776666665554

The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	441
1dmo_A	148	Calmodulin, Nmr, 30 Structures Length = 148		5e-21
1xfu_O	149	Crystal Structure Of Anthrax Edema Factor (ef) Trun		5e-21
1clm_A	148	Structure Of Paramecium Tetraurelia Calmodulin At 1		6e-21
1exr_A	148	The 1.0 Angstrom Crystal Structure Of Ca+2 Bound Ca		6e-21
4aqr_A	149	Crystal Structure Of A Calmodulin In Complex With T		1e-20
2be6_A	150	2.0 A Crystal Structure Of The Cav1.2 Iq Domain-CaC		1e-20
1prw_A	149	Crystal Structure Of Bovine Brain Ca++ Calmodulin I		1e-20
1up5_B	148	Chicken Calmodulin Length = 148		1e-20
1cdl_A	147	Target Enzyme Recognition By Calmodulin: 2.4 Angstr		1e-20
1qtx_A	148	The 1.65 Angstrom Structure Of Calmodulin Rs20 Pept		1e-20
4djc_A	152	1.35 A Crystal Structure Of The Nav1.5 Diii-Iv-CaCA		1e-20
2wel_D	150	Crystal Structure Of Su6656-Bound CalciumCALMODULIN		1e-20
3ewt_A	154	Crystal Structure Of Calmodulin Complexed With A Pe		2e-20
1cm1_A	148	Motions Of Calmodulin-Single-Conformer Refinement L		2e-20
2ygg_B	150	Complex Of Cambr And Cam Length = 150		2e-20
1iq5_A	149	CalmodulinNEMATODE CA2+CALMODULIN DEPENDENT KINASE		2e-20
2k0j_A	148	Solution Structure Of Cam Complexed To Drp1p Length		2e-20
2f2o_A	179	Structure Of Calmodulin Bound To A Calcineurin Pept		2e-20
3evu_A	449	Crystal Structure Of Calcium Bound Dimeric Gcamp2,		2e-20
3ek8_A	449	Calcium-Saturated Gcamp2 T116vG87R MUTANT MONOMER L		2e-20
3sg6_A	450	Crystal Structure Of Dimeric Gcamp2-Lia(Linker 1) L		2e-20
3evr_A	411	Crystal Structure Of Calcium Bound Monomeric Gcamp2		2e-20
3o77_A	415	The Structure Of Ca2+ Sensor (Case-16) Length = 415		3e-20
3o78_A	415	The Structure Of Ca2+ Sensor (Case-12) Length = 415		3e-20
1rfj_A	149	Crystal Structure Of Potato Calmodulin Pcm6 Length		3e-20
3sg7_A	448	Crystal Structure Of Gcamp3-Kf(Linker 1) Length = 4		3e-20
3sg2_A	449	Crystal Structure Of Gcamp2-T116v,D381y Length = 44		3e-20
3ekh_A	449	Calcium-Saturated Gcamp2 T116vK378W MUTANT MONOMER		3e-20
3sg5_A	448	Crystal Structure Of Dimeric Gcamp3-D380y, Qp(Linke		3e-20
3sg3_A	449	Crystal Structure Of Gcamp3-D380y Length = 449		3e-20
3sg4_A	448	Crystal Structure Of Gcamp3-D380y, Lp(Linker 2) Len		4e-20
1qs7_A	145	The 1.8 Angstrom Structure Of Calmodulin Rs20 Pepti		4e-20
2lv6_A	148	The Complex Between Ca-calmodulin And Skeletal Musc		4e-20
1y0v_H	146	Crystal Structure Of Anthrax Edema Factor (Ef) In C		4e-20
1cdm_A	144	Modulation Of Calmodulin Plasticity In Molecular Re		4e-20
1k93_D	144	Crystal Structure Of The Adenylyl Cyclase Domain Of		4e-20
2vay_A	146	Calmodulin Complexed With Cav1.1 Iq Peptide Length		4e-20
1vrk_A	148	The 1.9 Angstrom Structure Of E84k-Calmodulin Rs20		6e-20
3u0k_A	440	Crystal Structure Of The Genetically Encoded Calciu		7e-20
4gow_D	144	Crystal Structure Of Ca2+CAM:KV7.4 (KCNQ4) B HELIX		8e-20
2ix7_A	145	Structure Of Apo-Calmodulin Bound To Unconventional		8e-20
2bbm_A	148	Solution Structure Of A Calmodulin-Target Peptide C		1e-19
2bkh_B	149	Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Struc		1e-19
1ooj_A	149	Structural Genomics Of Caenorhabditis Elegans : Cal		1e-19
1deg_A	142	The Linker Of Des-Glu84 Calmodulin Is Bent As Seen		1e-19
2vb6_B	149	Myosin Vi (Md-Insert2-Cam, Delta Insert1) Post-Rigo		2e-19
1ahr_A	146	Calmodulin Mutant With A Two Residue Deletion In Th		1e-18
1ggz_A	148	Crystal Structure Of The Calmodulin-Like Protein (H		3e-18
1xfx_O	149	Crystal Structure Of Anthrax Edema Factor (Ef) In C		3e-18
3ekj_A	449	Calcium-Free Gcamp2 (Calcium Binding Deficient Muta		3e-18
2l1w_A	149	The Solution Structure Of Soybean Calmodulin Isofor		8e-18
1niw_A	148	Crystal Structure Of Endothelial Nitric Oxide Synth		9e-18
1y6w_A	148	Trapped Intermediate Of Calmodulin Length = 148		4e-17
2lmt_A	148	Nmr Structure Of Androcam Length = 148		4e-15
2lhi_A	176	Solution Structure Of Ca2+CNA1 PEPTIDE-Bound Ycam L		4e-14
1lkj_A	146	Nmr Structure Of Apo Calmodulin From Yeast Saccharo		1e-13
4ds7_A	147	Crystal Structure Of Yeast Calmodulin Bound To The		2e-13
2obh_A	143	Centrin-Xpc Peptide Length = 143		1e-12
3qrx_A	169	Chlamydomonas Reinhardtii Centrin Bound To Melittin		9e-12
2lhh_A	128	Solution Structure Of Ca2+-Bound Ycam Length = 128		5e-11
2bl0_B	145	Physarum Polycephalum Myosin Ii Regulatory Domain L		1e-10
1br1_B	150	Smooth Muscle Myosin Motor Domain-Essential Light C		3e-10
3kf9_A	149	Crystal Structure Of The SdcenSKMLCK COMPLEX Length		4e-10
3j04_C	148	Em Structure Of The Heavy Meromyosin Subfragment Of		4e-10
2kxw_A	73	Structure Of The C-Domain Fragment Of Apo Calmoduli		6e-10
2ro9_A	69	Solution Structure Of Calcium Bound Soybean Calmodu		6e-10
2kz2_A	94	Calmodulin, C-Terminal Domain, F92e Mutant Length =		1e-09
2rrt_A	72	Solution Structure Of Magnesium-Bound Form Of Calmo		1e-09
2kn2_A	92	Solution Structure Of The C-Terminal Domain Of Soyb		1e-09
2rob_A	70	Solution Structure Of Calcium Bound Soybean Calmodu		1e-09
1yru_B	74	Crystal Structure Analysis Of The Adenylyl Cyclaes		2e-09
1cmf_A	73	Nmr Solution Structure Of Apo Calmodulin Carboxy-Te		2e-09
1zot_B	69	Crystal Structure Analysis Of The CyaaC-Cam With Pm		3e-09
1fw4_A	71	Crystal Structure Of E. Coli Fragment Tr2c From Cal		3e-09
2col_B	67	Crystal Structure Analysis Of CyaaC-Cam With Pyroph		5e-09
1f71_A	67	Refined Solution Structure Of Calmodulin C-Terminal		5e-09
3ifk_A	90	Crystal Structure Of Calcium-Saturated Calmodulin N		7e-09
2w4a_C	145	Isometrically Contracting Insect Asynchronous Fligh		2e-08
1oe9_B	151	Crystal Structure Of Myosin V Motor With Essential		5e-08
4b8c_D	727	Nuclease Module Of The Yeast Ccr4-Not Complex Lengt		2e-07
3jtd_C	156	Calcium-Free Scallop Myosin Regulatory Domain With		3e-07
1wdc_C	156	Scallop Myosin Regulatory Domain Length = 156		3e-07
2bl0_C	142	Physarum Polycephalum Myosin Ii Regulatory Domain L		3e-07
1ggw_A	140	Cdc4p From Schizosaccharomyces Pombe Length = 140		3e-07
2ggm_A	172	Human Centrin 2 Xeroderma Pigmentosum Group C Prote		4e-07
2ec6_C	156	Placopecten Striated Muscle Myosin Ii Length = 156		5e-07
2os8_C	157	Rigor-Like Structures Of Muscle Myosins Reveal Key		6e-07
2llo_A	80	Solution Nmr-Derived Structure Of Calmodulin N-Lobe		6e-07
3pn7_C	156	Visualizing New Hinges And A Potential Major Source		6e-07
1m8q_C	147	Molecular Models Of Averaged Rigor Crossbridges Fro		6e-07
2mys_C	149	Myosin Subfragment-1, Alpha Carbon Coordinates Only		8e-07
1dfk_Z	152	Nucleotide-Free Scallop Myosin S1-Near Rigor State		8e-07
2w4t_Z	151	Isometrically Contracting Insect Asynchronous Fligh		1e-06
1kk8_C	154	Scallop Myosin (S1-Adp-Befx) In The Actin-Detached		1e-06
1m39_A	89	Solution Structure Of The C-Terminal Fragment (F86-		1e-06
1j7o_A	76	Solution Structure Of Calcium-calmodulin N-terminal		1e-06
1f70_A	76	Refined Solution Structure Of Calmodulin N-Terminal		1e-06
2jtz_A	161	Solution Structure And Chemical Shift Assignments O		1e-06
3b32_A	75	Crystal Structure Of Calcium-Saturated Calmodulin N		1e-06
1ak8_A	76	Nmr Solution Structure Of Cerium-Loaded Calmodulin		1e-06
2lqc_A	77	Nmr Solution Structure Of A Ca2+-Calmodulin With A		1e-06
1aj4_A	161	Structure Of Calcium-Saturated Cardiac Troponin C,		1e-06
2i08_A	78	Solvation Effect In Conformational Changes Of Ef-Ha		1e-06
3uct_A	79	Structure Of Mn2+-Bound N-Terminal Domain Of Calmod		1e-06
1dtl_A	161	Crystal Structure Of Calcium-Saturated (3ca2+) Card		2e-06
1sw8_A	79	Solution Structure Of The N-Terminal Domain Of Huma		2e-06
2jt0_A	161	Solution Structure Of F104w Cardiac Troponin C Leng		2e-06
2ro8_A	79	Solution Structure Of Calcium Bound Soybean Calmodu		2e-06
1a2x_A	159	Complex Of Troponin C With A 47 Residue (1-47) Frag		3e-06
1scm_C	149	Structure Of The Regulatory Domain Of Scallop Myosi		4e-06
1la0_A	161	Solution Structure Of Calcium Saturated Cardiac Tro		4e-06
1tcf_A	159	Crystal Structure Of Calcium-Saturated Rabbit Skele		4e-06
4tnc_A	162	Refined Structure Of Chicken Skeletal Muscle Tropon		6e-06
2jt3_A	161	Solution Structure Of F153w Cardiac Troponin C Leng		1e-05
5tnc_A	162	Refined Crystal Structure Of Troponin C From Turkey		1e-05
2hf5_A	68	The Structure And Function Of A Novel Two-Site Calc		1e-05
2jt8_A	161	Solution Structure Of The F153-To-5-Flurotryptophan		2e-05
2w49_0	159	Isometrically Contracting Insect Asynchronous Fligh		2e-05
1ytz_C	162	Crystal Structure Of Skeletal Muscle Troponin In Th		2e-05
1zmz_A	98	Solution Structure Of The N-Terminal Domain (M1-S98		2e-05
2lan_A	167	Nmr Structure Of Ca2+-Bound Cabp1 N-Domain With Rdc		3e-05
3ox5_A	153	Crystal Structure Of The Calcium Sensor Calcium-Bin		4e-05
3ox6_A	153	Crystal Structure Of The Calcium Sensor Calcium-Bin		5e-05
1tnw_A	162	Nmr Solution Structure Of Calcium Saturated Skeleta		7e-05
3j04_B	143	Em Structure Of The Heavy Meromyosin Subfragment Of		8e-05
3dtp_E	196	Tarantula Heavy Meromyosin Obtained By Flexible Doc		2e-04
1f54_A	77	Solution Structure Of The Apo N-Terminal Domain Of		3e-04
2b1u_A	71	Solution Structure Of Calmodulin-Like Skin Protein		4e-04
3i5g_B	153	Crystal Structure Of Rigor-Like Squid Myosin S1 Len		5e-04
1m46_A	148	Crystal Structure Of Mlc1p Bound To Iq4 Of Myo2p, A		5e-04
2ami_A	96	Solution Structure Of The Calcium-Loaded N-Terminal		6e-04
3i5g_C	159	Crystal Structure Of Rigor-Like Squid Myosin S1 Len		7e-04
1oqp_A	77	Structure Of The Ca2+C-Terminal Domain Of Caltracti		7e-04
2fce_A	70	Solution Structure Of C-Lobe Myosin Light Chain Fro		9e-04

>pdb|1DMO|A Chain A, Calmodulin, Nmr, 30 Structures Length = 148

Iteration: 1
 Score = 99.0 bits (245), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 87/171 (50%), Gaps = 36/171 (21%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+  + E               
Sbjct: 11  EFKEAFSLFDKDGDGTI-TTKELGTVMRSLGQNPTEAELQDMINE--------------- 54
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                              D   +G + FP+FL +M    K  D  +E+ +AF+  D   
Sbjct: 55  ------------------VDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 96
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           +G + A  L+HV+ N GE L+ +EVD++ REAN+  + +V YE+FV++  A
Sbjct: 97  NGYISAAELRHVMTNLGEKLTDEEVDEMIREANIDGDGQVNYEEFVQMMTA 147

>pdb|1XFU|O Chain O, Crystal Structure Of Anthrax Edema Factor (ef) Truncation Mutant, Ef-delta 64 In Complex With Calmodulin Length = 149

Iteration: 1
 Score = 99.0 bits (245), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 87/171 (50%), Gaps = 36/171 (21%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+  + E               
Sbjct: 12  EFKEAFSLFDKDGDGTITTK-ELGTVMRSLGQNPTEAELQDMINE--------------- 55
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                              D   +G + FP+FL +M    K  D  +E+ +AF+  D   
Sbjct: 56  ------------------VDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 97
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           +G + A  L+HV+ N GE L+ +EVDQ+ REA++  + +V YE+FV++  A
Sbjct: 98  NGYISAAELRHVMTNLGEKLTDEEVDQMIREADIDGDGQVNYEEFVQMMTA 148

>pdb|1CLM|A Chain A, Structure Of Paramecium Tetraurelia Calmodulin At 1.8 Angstroms Resolution Length = 148

Iteration: 1
 Score = 98.6 bits (244), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 87/171 (50%), Gaps = 36/171 (21%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+  + E               
Sbjct: 11  EFKEAFALFDKDGDGTITT-KELGTVMRSLGQNPTEAELQDMINE--------------- 54
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                              D   +G + FP+FL +M    K +D  +E+++AFK  D   
Sbjct: 55  ------------------VDADGNGTIDFPEFLSLMARKMKEQDSEEELIEAFKVFDRDG 96
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           +G + A  L+HV+ N GE L+  EVD++ REA++  +  + YE+FV++  +
Sbjct: 97  NGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYEEFVRMMVS 147

>pdb|1EXR|A Chain A, The 1.0 Angstrom Crystal Structure Of Ca+2 Bound Calmodulin Length = 148

Iteration: 1
 Score = 98.6 bits (244), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 87/171 (50%), Gaps = 36/171 (21%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+  + E               
Sbjct: 11  EFKEAFALFDKDGDGTITT-KELGTVMRSLGQNPTEAELQDMINE--------------- 54
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                              D   +G + FP+FL +M    K +D  +E+++AFK  D   
Sbjct: 55  ------------------VDADGNGTIDFPEFLSLMARKMKEQDSEEELIEAFKVFDRDG 96
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           +G + A  L+HV+ N GE L+  EVD++ REA++  +  + YE+FV++  +
Sbjct: 97  NGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYEEFVRMMVS 147

>pdb|4AQR|A Chain A, Crystal Structure Of A Calmodulin In Complex With The Regulatory Domain Of A Plasma-Membrane Ca2+-Atpase Length = 149

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 86/170 (50%), Gaps = 34/170 (20%)
Query: 267 EFRECFFLFARNGT-IKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHT 325
           EF+E F LF ++G    T  EL  +MRSLG +PT AEL+  + E                
Sbjct: 12  EFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINE---------------- 55
Query: 326 HSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKS 385
                             D   +G + FP+FL +M    K  D  +E+ +AF+  D  ++
Sbjct: 56  -----------------VDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQN 98
Query: 386 GTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           G + A  L+HV+ N GE L+ +EVD++ REA+V  + ++ YE+FVK+  A
Sbjct: 99  GFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 148

>pdb|2BE6|A Chain A, 2.0 A Crystal Structure Of The Cav1.2 Iq Domain-CaCAM COMPLEX Length = 150

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 88/173 (50%), Gaps = 36/173 (20%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+  + E               
Sbjct: 12  EFKEAFSLFDKDGDGTITTK-ELGTVMRSLGQNPTEAELQDMINE--------------- 55
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                              D   +G + FP+FL +M    K  D  +E+ +AF+  D   
Sbjct: 56  ------------------VDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 97
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAPV 437
           +G + A  L+HV+ N GE L+ +EVD++ REA++  + +V YE+FV++  A +
Sbjct: 98  NGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAKL 150

>pdb|1PRW|A Chain A, Crystal Structure Of Bovine Brain Ca++ Calmodulin In A Compact Form Length = 149

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 36/171 (21%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+  + E               
Sbjct: 12  EFKEAFSLFDKDGDGTITTK-ELGTVMRSLGQNPTEAELQDMINE--------------- 55
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                              D   +G + FP+FL +M    K  D  +E+ +AF+  D   
Sbjct: 56  ------------------VDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 97
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           +G + A  L+HV+ N GE L+ +EVD++ REA++  + +V YE+FV++  A
Sbjct: 98  NGYISAAELRHVMTNLGEXLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 148

>pdb|1UP5|B Chain B, Chicken Calmodulin Length = 148

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 36/171 (21%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+  + E               
Sbjct: 11  EFKEAFSLFDKDGDGTITTK-ELGTVMRSLGQNPTEAELQDMINE--------------- 54
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                              D   +G + FP+FL +M    K  D  +E+ +AF+  D   
Sbjct: 55  ------------------VDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 96
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           +G + A  L+HV+ N GE L+ +EVD++ REA++  + +V YE+FV++  A
Sbjct: 97  NGYISAAELRHVMTNLGEXLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 147

>pdb|1CDL|A Chain A, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms Structure Of A Calmodulin-Peptide Complex Length = 147

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 36/171 (21%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+  + E               
Sbjct: 11  EFKEAFSLFDKDGDGTITTK-ELGTVMRSLGQNPTEAELQDMINE--------------- 54
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                              D   +G + FP+FL +M    K  D  +E+ +AF+  D   
Sbjct: 55  ------------------VDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 96
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           +G + A  L+HV+ N GE L+ +EVD++ REA++  + +V YE+FV++  A
Sbjct: 97  NGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 147

>pdb|1QTX|A Chain A, The 1.65 Angstrom Structure Of Calmodulin Rs20 Peptide Complex Length = 148

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 87/171 (50%), Gaps = 36/171 (21%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+  + E               
Sbjct: 11  EFKEAFSLFDKDGDGTITTK-ELGTVMRSLGQNPTEAELQDMINE--------------- 54
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                              D   +G + FP+FL +M    K  D  +E+ +AF+  D   
Sbjct: 55  ------------------VDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDG 96
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           +G + A  L+HV+ N GE L+ +EVD++ REA+V  + +V YE+FV++  A
Sbjct: 97  NGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQVNYEEFVQVMMA 147

>pdb|4DJC|A Chain A, 1.35 A Crystal Structure Of The Nav1.5 Diii-Iv-CaCAM COMPLEX Length = 152

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 36/171 (21%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+  + E               
Sbjct: 15  EFKEAFSLFDKDGDGTITTK-ELGTVMRSLGQNPTEAELQDMINE--------------- 58
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                              D   +G + FP+FL +M    K  D  +E+ +AF+  D   
Sbjct: 59  ------------------VDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 100
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           +G + A  L+HV+ N GE L+ +EVD++ REA++  + +V YE+FV++  A
Sbjct: 101 NGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 151

>pdb|2WEL|D Chain D, Crystal Structure Of Su6656-Bound CalciumCALMODULIN- Dependent Protein Kinase Ii Delta In Complex With Calmodulin Length = 150

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 36/171 (21%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+  + E               
Sbjct: 13  EFKEAFSLFDKDGDGTITTK-ELGTVMRSLGQNPTEAELQDMINE--------------- 56
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                              D   +G + FP+FL +M    K  D  +E+ +AF+  D   
Sbjct: 57  ------------------VDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 98
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           +G + A  L+HV+ N GE L+ +EVD++ REA++  + +V YE+FV++  A
Sbjct: 99  NGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 149

>pdb|3EWT|A Chain A, Crystal Structure Of Calmodulin Complexed With A Peptide Length = 154

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 36/171 (21%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+  + E               
Sbjct: 17  EFKEAFSLFDKDGDGTITTK-ELGTVMRSLGQNPTEAELQDMINE--------------- 60
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                              D   +G + FP+FL +M    K  D  +E+ +AF+  D   
Sbjct: 61  ------------------VDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 102
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           +G + A  L+HV+ N GE L+ +EVD++ REA++  + +V YE+FV++  A
Sbjct: 103 NGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 153

>pdb|1CM1|A Chain A, Motions Of Calmodulin-Single-Conformer Refinement Length = 148

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 36/171 (21%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+  + E               
Sbjct: 11  EFKEAFSLFDKDGDGTITTK-ELGTVMRSLGQNPTEAELQDMINE--------------- 54
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                              D   +G + FP+FL +M    K  D  +E+ +AF+  D   
Sbjct: 55  ------------------VDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 96
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           +G + A  L+HV+ N GE L+ +EVD++ REA++  + +V YE+FV++  A
Sbjct: 97  NGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 147

>pdb|2YGG|B Chain B, Complex Of Cambr And Cam Length = 150

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 36/171 (21%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+  + E               
Sbjct: 12  EFKEAFSLFDKDGDGTITTK-ELGTVMRSLGQNPTEAELQDMINE--------------- 55
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                              D   +G + FP+FL +M    K  D  +E+ +AF+  D   
Sbjct: 56  ------------------VDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 97
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           +G + A  L+HV+ N GE L+ +EVD++ REA++  + +V YE+FV++  A
Sbjct: 98  NGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 148

>pdb|1IQ5|A Chain A, CalmodulinNEMATODE CA2+CALMODULIN DEPENDENT KINASE KINASE Fragment Length = 149

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 36/171 (21%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+  + E               
Sbjct: 12  EFKEAFSLFDKDGDGTITTK-ELGTVMRSLGQNPTEAELQDMINE--------------- 55
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                              D   +G + FP+FL +M    K  D  +E+ +AF+  D   
Sbjct: 56  ------------------VDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 97
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           +G + A  L+HV+ N GE L+ +EVD++ REA++  + +V YE+FV++  A
Sbjct: 98  NGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 148

>pdb|2K0J|A Chain A, Solution Structure Of Cam Complexed To Drp1p Length = 148

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 86/171 (50%), Gaps = 36/171 (21%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+  + E               
Sbjct: 11  EFKEAFSLFDKDGDGTITTK-ELGTVMRSLGQNPTEAELQDMINE--------------- 54
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                              D    G + FP+FL +M    K  D  +E+ +AF+  D   
Sbjct: 55  ------------------VDADGDGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 96
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           +G + A  L+HV+ N GE L+ +EVD++ REA++  + +V YE+FV++  A
Sbjct: 97  NGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 147

>pdb|2F2O|A Chain A, Structure Of Calmodulin Bound To A Calcineurin Peptide: A New Way Of Making An Old Binding Mode Length = 179

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 36/171 (21%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+  + E               
Sbjct: 12  EFKEAFSLFDKDGDGTI-TTKELGTVMRSLGQNPTEAELQDMINE--------------- 55
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                              D   +G + FP+FL +M    K  D  +E+ +AF+  D   
Sbjct: 56  ------------------VDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 97
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           +G + A  L+HV+ N GE L+ +EVD++ REA++  + +V YE+FV++  A
Sbjct: 98  NGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 148

>pdb|3EVU|A Chain A, Crystal Structure Of Calcium Bound Dimeric Gcamp2, (#1) Length = 449

Iteration: 1
 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 86/171 (50%), Gaps = 36/171 (21%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+                    
Sbjct: 312 EFKEAFSLFDKDGDGTI-TTKELGTVMRSLGQNPTEAELQ-------------------- 350
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                        D     D   +G + FP+FL +M    K  D  +E+ +AF+  D   
Sbjct: 351 -------------DMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 397
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           +G + A  L+HV+ N GE L+ +EVD++ REA++  + +V YE+FV++  A
Sbjct: 398 NGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 448

>pdb|3EK8|A Chain A, Calcium-Saturated Gcamp2 T116vG87R MUTANT MONOMER Length = 449

Iteration: 1
 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 86/171 (50%), Gaps = 36/171 (21%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+                    
Sbjct: 312 EFKEAFSLFDKDGDGTI-TTKELGTVMRSLGQNPTEAELQ-------------------- 350
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                        D     D   +G + FP+FL +M    K  D  +E+ +AF+  D   
Sbjct: 351 -------------DMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 397
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           +G + A  L+HV+ N GE L+ +EVD++ REA++  + +V YE+FV++  A
Sbjct: 398 NGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 448

>pdb|3SG6|A Chain A, Crystal Structure Of Dimeric Gcamp2-Lia(Linker 1) Length = 450

Iteration: 1
 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 86/171 (50%), Gaps = 36/171 (21%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+                    
Sbjct: 313 EFKEAFSLFDKDGDGTI-TTKELGTVMRSLGQNPTEAELQ-------------------- 351
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                        D     D   +G + FP+FL +M    K  D  +E+ +AF+  D   
Sbjct: 352 -------------DMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 398
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           +G + A  L+HV+ N GE L+ +EVD++ REA++  + +V YE+FV++  A
Sbjct: 399 NGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 449

>pdb|3EVR|A Chain A, Crystal Structure Of Calcium Bound Monomeric Gcamp2 Length = 411

Iteration: 1
 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 86/171 (50%), Gaps = 36/171 (21%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+                    
Sbjct: 275 EFKEAFSLFDKDGDGTI-TTKELGTVMRSLGQNPTEAELQ-------------------- 313
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                        D     D   +G + FP+FL +M    K  D  +E+ +AF+  D   
Sbjct: 314 -------------DMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 360
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           +G + A  L+HV+ N GE L+ +EVD++ REA++  + +V YE+FV++  A
Sbjct: 361 NGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 411

>pdb|3O77|A Chain A, The Structure Of Ca2+ Sensor (Case-16) Length = 415

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 86/171 (50%), Gaps = 36/171 (21%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+                    
Sbjct: 278 EFKEAFSLFDKDGDGTITT-KELGTVMRSLGQNPTEAELQ-------------------- 316
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                        D     D   +G + FP+FL +M    K  D  +E+ +AF+  D   
Sbjct: 317 -------------DMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 363
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           +G + A  L+HV+ N GE L+ +EVD++ REA++  + +V YE+FV++  A
Sbjct: 364 NGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 414

>pdb|3O78|A Chain A, The Structure Of Ca2+ Sensor (Case-12) Length = 415

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 86/171 (50%), Gaps = 36/171 (21%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+                    
Sbjct: 278 EFKEAFSLFDKDGDGTITT-KELGTVMRSLGQNPTEAELQ-------------------- 316
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                        D     D   +G + FP+FL +M    K  D  +E+ +AF+  D   
Sbjct: 317 -------------DMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 363
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           +G + A  L+HV+ N GE L+ +EVD++ REA++  + +V YE+FV++  A
Sbjct: 364 NGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 414

>pdb|1RFJ|A Chain A, Crystal Structure Of Potato Calmodulin Pcm6 Length = 149

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 86/170 (50%), Gaps = 34/170 (20%)
Query: 267 EFRECFFLFARNGT-IKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHT 325
           EF+E F LF ++G    T  EL  +MRSLG +PT AEL+  + E                
Sbjct: 12  EFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINE---------------- 55
Query: 326 HSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKS 385
                             D   +G + FP+FL +M    K  D  +E+ +AF+  D  ++
Sbjct: 56  -----------------VDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQN 98
Query: 386 GTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           G + A  L+HV+ N GE L+ +EVD++ REA+V  + ++ Y++FVK+  A
Sbjct: 99  GFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYDEFVKVMMA 148

>pdb|3SG7|A Chain A, Crystal Structure Of Gcamp3-Kf(Linker 1) Length = 448

Iteration: 1
 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 86/171 (50%), Gaps = 36/171 (21%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+  + E               
Sbjct: 311 EFKEAFSLFDKDGDGTI-TTKELGTVMRSLGQNPTEAELQDMINE--------------- 354
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                              D    G + FP+FL +M    K  D  +E+ +AF+  D   
Sbjct: 355 ------------------VDADGDGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 396
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           +G + A  L+HV+ N GE L+ +EVD++ REA++  + +V YE+FV++  A
Sbjct: 397 NGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 447

>pdb|3SG2|A Chain A, Crystal Structure Of Gcamp2-T116v,D381y Length = 449

Iteration: 1
 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 86/171 (50%), Gaps = 36/171 (21%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+                    
Sbjct: 312 EFKEAFSLFDKDGDGTITT-KELGTVMRSLGQNPTEAELQ-------------------- 350
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                        D     D   +G + FP+FL +M    K  D  +E+ +AF+  D   
Sbjct: 351 -------------DMINEVDADGNGTIDFPEFLTMMARKMKYTDSEEEIREAFRVFDKDG 397
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           +G + A  L+HV+ N GE L+ +EVD++ REA++  + +V YE+FV++  A
Sbjct: 398 NGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 448

>pdb|3EKH|A Chain A, Calcium-Saturated Gcamp2 T116vK378W MUTANT MONOMER Length = 449

Iteration: 1
 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 86/171 (50%), Gaps = 36/171 (21%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+                    
Sbjct: 312 EFKEAFSLFDKDGDGTITT-KELGTVMRSLGQNPTEAELQ-------------------- 350
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                        D     D   +G + FP+FL +M    K  D  +E+ +AF+  D   
Sbjct: 351 -------------DMINEVDADGNGTIDFPEFLTMMARWMKDTDSEEEIREAFRVFDKDG 397
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           +G + A  L+HV+ N GE L+ +EVD++ REA++  + +V YE+FV++  A
Sbjct: 398 NGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 448

>pdb|3SG5|A Chain A, Crystal Structure Of Dimeric Gcamp3-D380y, Qp(Linker 1), Lp(Linker 2) Length = 448

Iteration: 1
 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 85/171 (49%), Gaps = 36/171 (21%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+                    
Sbjct: 311 EFKEAFSLFDKDGDGTI-TTKELGTVMRSLGQNPTEAELQ-------------------- 349
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                        D     D    G + FP+FL +M    K  D  +E+ +AF+  D   
Sbjct: 350 -------------DMINEVDADGDGTIDFPEFLTMMARKMKYTDSEEEIREAFRVFDKDG 396
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           +G + A  L+HV+ N GE L+ +EVD++ REA++  + +V YE+FV++  A
Sbjct: 397 NGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 447

>pdb|3SG3|A Chain A, Crystal Structure Of Gcamp3-D380y Length = 449

Iteration: 1
 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 85/171 (49%), Gaps = 36/171 (21%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+                    
Sbjct: 312 EFKEAFSLFDKDGDGTI-TTKELGTVMRSLGQNPTEAELQ-------------------- 350
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                        D     D    G + FP+FL +M    K  D  +E+ +AF+  D   
Sbjct: 351 -------------DMINEVDADGDGTIDFPEFLTMMARKMKYTDSEEEIREAFRVFDKDG 397
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           +G + A  L+HV+ N GE L+ +EVD++ REA++  + +V YE+FV++  A
Sbjct: 398 NGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 448

>pdb|3SG4|A Chain A, Crystal Structure Of Gcamp3-D380y, Lp(Linker 2) Length = 448

Iteration: 1
 Score = 95.9 bits (237), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 85/171 (49%), Gaps = 36/171 (21%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+                    
Sbjct: 311 EFKEAFSLFDKDGDGTITT-KELGTVMRSLGQNPTEAELQ-------------------- 349
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                        D     D    G + FP+FL +M    K  D  +E+ +AF+  D   
Sbjct: 350 -------------DMINEVDADGDGTIDFPEFLTMMARKMKYTDSEEEIREAFRVFDKDG 396
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           +G + A  L+HV+ N GE L+ +EVD++ REA++  + +V YE+FV++  A
Sbjct: 397 NGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 447

>pdb|1QS7|A Chain A, The 1.8 Angstrom Structure Of Calmodulin Rs20 Peptide Complex Length = 145

Iteration: 1
 Score = 95.9 bits (237), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 58/171 (33%), Positives = 86/171 (50%), Gaps = 36/171 (21%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+                    
Sbjct: 8   EFKEAFSLFDKDGDGTITT-KELGTVMRSLGQNPTEAELQ-------------------- 46
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                        D     D   +G + FP+FL +M    K  D  +E+ +AF+  D   
Sbjct: 47  -------------DMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDG 93
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           +G + A  L+HV+ N GE L+ +EVD++ REA+V  + +V YE+FV++  A
Sbjct: 94  NGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQVNYEEFVQVMMA 144

>pdb|2LV6|A Chain A, The Complex Between Ca-calmodulin And Skeletal Muscle Myosin Light Chain Kinase From Combination Of Nmr And Aqueous And Contrast-matched Saxs Data Length = 148

Iteration: 1
 Score = 95.9 bits (237), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 86/171 (50%), Gaps = 36/171 (21%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+  + E               
Sbjct: 11  EFKEAFSLFDKDGDGTITTK-ELGTVMRSLGQNPTEAELQDMINE--------------- 54
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                              D   +G + FP+FL +M    K  D  +E+ +AF+  D   
Sbjct: 55  ------------------VDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 96
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           +G + A  L+HV+ N GE L+ +EVD++ REA++  + +V YE+FV +  A
Sbjct: 97  NGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTA 147

>pdb|1Y0V|H Chain H, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex With Calmodulin And Pyrophosphate Length = 146

Iteration: 1
 Score = 95.9 bits (237), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 57/171 (33%), Positives = 86/171 (50%), Gaps = 36/171 (21%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+                    
Sbjct: 9   EFKEAFSLFDKDGDGTITT-KELGTVMRSLGQNPTEAELQ-------------------- 47
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                        D     D   +G + FP+FL +M    K  D  +E+ +AF+  D   
Sbjct: 48  -------------DMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 94
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           +G + A  L+HV+ N GE L+ +EVD++ REA++  + +V YE+FV++  A
Sbjct: 95  NGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 145

>pdb|1CDM|A Chain A, Modulation Of Calmodulin Plasticity In Molecular Recognition On The Basis Of X-Ray Structures Length = 144

Iteration: 1
 Score = 95.9 bits (237), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 57/171 (33%), Positives = 86/171 (50%), Gaps = 36/171 (21%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+                    
Sbjct: 8   EFKEAFSLFDKDGDGTITT-KELGTVMRSLGQNPTEAELQ-------------------- 46
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                        D     D   +G + FP+FL +M    K  D  +E+ +AF+  D   
Sbjct: 47  -------------DMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 93
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           +G + A  L+HV+ N GE L+ +EVD++ REA++  + +V YE+FV++  A
Sbjct: 94  NGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 144

>pdb|1K93|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of Anthrax Edema Factor (Ef) In Complex With Calmodulin Length = 144

Iteration: 1
 Score = 95.9 bits (237), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 57/171 (33%), Positives = 86/171 (50%), Gaps = 36/171 (21%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+                    
Sbjct: 7   EFKEAFSLFDKDGDGTITT-KELGTVMRSLGQNPTEAELQ-------------------- 45
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                        D     D   +G + FP+FL +M    K  D  +E+ +AF+  D   
Sbjct: 46  -------------DMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 92
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           +G + A  L+HV+ N GE L+ +EVD++ REA++  + +V YE+FV++  A
Sbjct: 93  NGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 143

>pdb|2VAY|A Chain A, Calmodulin Complexed With Cav1.1 Iq Peptide Length = 146

Iteration: 1
 Score = 95.9 bits (237), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 57/171 (33%), Positives = 86/171 (50%), Gaps = 36/171 (21%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+                    
Sbjct: 9   EFKEAFSLFDKDGDGTITT-KELGTVMRSLGQNPTEAELQ-------------------- 47
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                        D     D   +G + FP+FL +M    K  D  +E+ +AF+  D   
Sbjct: 48  -------------DMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 94
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           +G + A  L+HV+ N GE L+ +EVD++ REA++  + +V YE+FV++  A
Sbjct: 95  NGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 145

>pdb|1VRK|A Chain A, The 1.9 Angstrom Structure Of E84k-Calmodulin Rs20 Peptide Complex Length = 148

Iteration: 1
 Score = 95.5 bits (236), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 36/171 (21%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+  + E               
Sbjct: 11  EFKEAFSLFDKDGDGTITTK-ELGTVMRSLGQNPTEAELQDMINE--------------- 54
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                              D   +G + FP+FL +M    K  D  +++ +AF+  D   
Sbjct: 55  ------------------VDADGNGTIDFPEFLNLMARKMKDTDSEEKLKEAFRVFDKDG 96
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           +G + A  L+HV+ N GE L+ +EVD++ REA+V  + +V YE+FV++  A
Sbjct: 97  NGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQVNYEEFVQVMMA 147

>pdb|3U0K|A Chain A, Crystal Structure Of The Genetically Encoded Calcium Indicator Rcamp Length = 440

Iteration: 1
 Score = 95.1 bits (235), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 85/171 (49%), Gaps = 36/171 (21%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+                    
Sbjct: 303 EFKEAFSLFDKDGDGTI-TTKELGTVMRSLGQNPTEAELQ-------------------- 341
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                        D     D    G + FP+FL +M    K  D  +E+ +AF+  D   
Sbjct: 342 -------------DMINEVDADGDGTIDFPEFLIMMARKMKDTDSEEEIREAFRVFDKDG 388
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           +G + A  L+HV+ N GE L+ +EVD++ REA++  + +V YE+FV++  A
Sbjct: 389 NGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 439

>pdb|4GOW|D Chain D, Crystal Structure Of Ca2+CAM:KV7.4 (KCNQ4) B HELIX COMPLEX Length = 144

Iteration: 1
 Score = 94.7 bits (234), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 56/168 (33%), Positives = 85/168 (50%), Gaps = 36/168 (21%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+                    
Sbjct: 9   EFKEAFSLFDKDGDGTITT-KELGTVMRSLGQNPTEAELQ-------------------- 47
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                        D     D   +G + FP+FL +M    K  D  +E+ +AF+  D   
Sbjct: 48  -------------DMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 94
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           +G + A  L+HV+ N GE L+ +EVD++ REA++  + +V YE+FV++
Sbjct: 95  NGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQM 142

>pdb|2IX7|A Chain A, Structure Of Apo-Calmodulin Bound To Unconventional Myosin V Length = 145

Iteration: 1
 Score = 94.7 bits (234), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 56/168 (33%), Positives = 85/168 (50%), Gaps = 36/168 (21%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+                    
Sbjct: 10  EFKEAFSLFDKDGDGTITT-KELGTVMRSLGQNPTEAELQ-------------------- 48
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                        D     D   +G + FP+FL +M    K  D  +E+ +AF+  D   
Sbjct: 49  -------------DMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 95
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           +G + A  L+HV+ N GE L+ +EVD++ REA++  + +V YE+FV++
Sbjct: 96  NGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQM 143

>pdb|2BBM|A Chain A, Solution Structure Of A Calmodulin-Target Peptide Complex By Multidimensional Nmr Length = 148

Iteration: 1
 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 86/171 (50%), Gaps = 36/171 (21%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+  + E               
Sbjct: 11  EFKEAFSLFDKDGDGTITTK-ELGTVMRSLGQNPTEAELQDMINE--------------- 54
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                              D   +G + FP+FL +M    K  D  +E+ +AF+  D   
Sbjct: 55  ------------------VDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 96
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           +G + A  L+HV+ N GE L+ +EVD++ REA++  + +V YE+FV +  +
Sbjct: 97  NGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTS 147

>pdb|2BKH|B Chain B, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure Length = 149

Iteration: 1
 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 86/171 (50%), Gaps = 36/171 (21%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+  + E               
Sbjct: 12  EFKEAFSLFDKDGDGTITTK-ELGTVMRSLGQNPTEAELQDMINE--------------- 55
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                              D   +G + FP+FL +M    K  D  +E+ +AF+  D   
Sbjct: 56  ------------------VDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 97
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           +G + A  L+HV+ N GE L+ +EVD++ REA++  + +V YE+FV +  +
Sbjct: 98  NGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTS 148

>pdb|1OOJ|A Chain A, Structural Genomics Of Caenorhabditis Elegans : Calmodulin Length = 149

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 85/168 (50%), Gaps = 36/168 (21%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+  + E               
Sbjct: 12  EFKEAFSLFDKDGDGTITTK-ELGTVMRSLGQNPTEAELQDMINE--------------- 55
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                              D   +G + FP+FL +M    K  D  +E+ +AF+  D   
Sbjct: 56  ------------------VDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 97
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           +G + A  L+HV+ N GE L+ +EVD++ REA++  + +V YE+FV +
Sbjct: 98  NGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTM 145

>pdb|1DEG|A Chain A, The Linker Of Des-Glu84 Calmodulin Is Bent As Seen In The Crystal Structure Length = 142

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 58/171 (33%), Positives = 86/171 (50%), Gaps = 37/171 (21%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+                    
Sbjct: 7   EFKEAFSLFDKDGDGTITT-KELGTVMRSLGQNPTEAELQ-------------------- 45
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                        D     D   +G + FP+FL +M    K  D  +E+ +AF+  D   
Sbjct: 46  -------------DMINEVDADGNGTIDFPEFLTMMARKMKDTD-SEEIREAFRVFDKDG 91
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           +G + A  L+HV+ N GE L+ +EVD++ REAN+  + +V YE+FV++  A
Sbjct: 92  NGYISAAELRHVMTNLGEKLTDEEVDEMIREANIDGDGQVNYEEFVQMMTA 142

>pdb|2VB6|B Chain B, Myosin Vi (Md-Insert2-Cam, Delta Insert1) Post-Rigor State ( Crystal Form 2) Length = 149

Iteration: 1
 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 86/171 (50%), Gaps = 36/171 (21%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+  + E               
Sbjct: 12  EFKEAFSLFDKDGDGTITTK-ELGTVMRSLGQNPTEAELQDMINE--------------- 55
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                              D   +G + FP+FL +M    K  D  +E+ +AF+  D   
Sbjct: 56  ------------------VDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 97
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           +G + A  L+HV+ N GE L+ +EVD++ RE+++  + +V YE+FV +  +
Sbjct: 98  NGFISAAELRHVMTNLGEKLTDEEVDEMIRESDIDGDGQVNYEEFVTMMTS 148

>pdb|1AHR|A Chain A, Calmodulin Mutant With A Two Residue Deletion In The Central Helix Length = 146

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 56/168 (33%), Positives = 85/168 (50%), Gaps = 38/168 (22%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+                    
Sbjct: 11  EFKEAFSLFDKDGDGTITT-KELGTVMRSLGQNPTEAELQ-------------------- 49
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                        D     D   +G + FP+FL +M    K +D  +E+ +AF+  D   
Sbjct: 50  -------------DMINEVDADGNGTIDFPEFLTMMA--RKMKDSEEEIREAFRVFDKDG 94
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           +G + A  L+HV+ N GE L+ +EVD++ REA++  + +V YE+FV +
Sbjct: 95  NGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTM 142

>pdb|1GGZ|A Chain A, Crystal Structure Of The Calmodulin-Like Protein (Hclp) From Human Epithelial Cells Length = 148

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 34/167 (20%)
Query: 267 EFRECFFLFARNGT-IKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHT 325
           EF+E F LF ++G    T  EL  +MRSLG +PT AEL+  ++E                
Sbjct: 11  EFKEAFSLFDKDGDGCITTRELGTVMRSLGQNPTEAELRDMMSE---------------- 54
Query: 326 HSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKS 385
                             D   +G + FP+FL +M    K  D  +E+ +AF+  D   +
Sbjct: 55  -----------------IDRDGNGTVDFPEFLGMMARKMKDTDNEEEIREAFRVFDKDGN 97
Query: 386 GTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           G V A  L+HV+   GE LS +EVD++ R A+   + +V YE+FV++
Sbjct: 98  GFVSAAELRHVMTRLGEKLSDEEVDEMIRAADTDGDGQVNYEEFVRV 144

>pdb|1XFX|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex With Calmodulin In The Presence Of 10 Millimolar Exogenously Added Calcium Chloride Length = 149

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 81/171 (47%), Gaps = 36/171 (21%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  + RSLG +PT AEL+  + E               
Sbjct: 12  EFKEAFSLFDKDGDGTITTK-ELGTVXRSLGQNPTEAELQDXINE--------------- 55
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                              D   +G + FP+FL       K  D  +E+ +AF+  D   
Sbjct: 56  ------------------VDADGNGTIDFPEFLTXXARKXKDTDSEEEIREAFRVFDKDG 97
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           +G + A  L+HV  N GE L+ +EVDQ  REA++  + +V YE+FV+   A
Sbjct: 98  NGYISAAELRHVXTNLGEKLTDEEVDQXIREADIDGDGQVNYEEFVQXXTA 148

>pdb|3EKJ|A Chain A, Calcium-Free Gcamp2 (Calcium Binding Deficient Mutant) Length = 449

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 83/170 (48%), Gaps = 34/170 (20%)
Query: 267 EFRECFFLFARNGTIK-TLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHT 325
           EF+E F LF ++G    T  +L  +MRSLG +PT AEL+  + E G              
Sbjct: 312 EFKEAFSLFDKDGDGGITTKQLGTVMRSLGQNPTEAELQDMINEVG-------------- 357
Query: 326 HSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKS 385
                            AD   +G + FP FL +M    K  D  +E+ +AF+      +
Sbjct: 358 -----------------ADG--NGTIDFPQFLTMMARKMKDTDSEEEIREAFRVFGKDGN 398
Query: 386 GTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           G + A  L+HV+ N GE L+ +EVD++ REA +  + +V YE FV++  A
Sbjct: 399 GYISAAQLRHVMTNLGEKLTDEEVDEMIREAGIDGDGQVNYEQFVQMMTA 448

>pdb|2L1W|A Chain A, The Solution Structure Of Soybean Calmodulin Isoform 4 Complexed With The Vacuolar Calcium Atpase Bca1 Peptide Length = 149

Iteration: 1
 Score = 88.2 bits (217), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 88/168 (52%), Gaps = 34/168 (20%)
Query: 266 LEFRECFFLFARNGT-IKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           ++F+E F LF ++G    T++EL+ ++RSL  +PT  EL+  ++E               
Sbjct: 10  VDFKEAFGLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMISE--------------- 54
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                              D   +G + F +FL +M    K  D  +E+ +AFK  D  +
Sbjct: 55  ------------------VDADGNGTIEFDEFLSLMAKKVKDTDAEEELKEAFKVFDKDQ 96
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           +G + A  L+HV++N GE L+ +EV+Q+ +EA++  + +V YE+FVK+
Sbjct: 97  NGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYEEFVKM 144

>pdb|1NIW|A Chain A, Crystal Structure Of Endothelial Nitric Oxide Synthase Peptide Bound To Calmodulin Length = 148

Iteration: 1
 Score = 88.2 bits (217), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 81/171 (47%), Gaps = 36/171 (21%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  + RSLG +PT AEL+  + E               
Sbjct: 11  EFKEAFSLFDKDGDGTITTK-ELGTVXRSLGQNPTEAELQDXINE--------------- 54
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                              D   +G + FP+FL       K  D  +E+ +AF+  D   
Sbjct: 55  ------------------VDADGNGTIDFPEFLTXXARKXKDTDSEEEIREAFRVFDKDG 96
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           +G + A  L+HV  N GE L+ +EVD+  REA++  + +V YE+FV+   A
Sbjct: 97  NGYISAAELRHVXTNLGEKLTDEEVDEXIREADIDGDGQVNYEEFVQXXTA 147

>pdb|1Y6W|A Chain A, Trapped Intermediate Of Calmodulin Length = 148

Iteration: 1
 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 81/171 (47%), Gaps = 36/171 (21%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++G  TI T  EL  + RSLG +PT AEL+                    
Sbjct: 11  EFKEAFSLFDKDGDGTITTK-ELGTVXRSLGCNPTEAELQ-------------------- 49
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                        D     D   +G ++FP+FL       K  D  +E+ +AF+  D   
Sbjct: 50  -------------DXINEVDADGNGTINFPEFLTXXARCXKDTDSEEEIREAFRVFDKDG 96
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           +G + A  L+HV  N GE L+ +EVD+  REA++  + +V YE+FV+   A
Sbjct: 97  NGYISAAELRHVXTNLGEKLTDEEVDEXIREADIDGDGQVNYEEFVQXXTA 147

>pdb|2LMT|A Chain A, Nmr Structure Of Androcam Length = 148

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 34/165 (20%)
Query: 267 EFRECFFLFARNGTIK-TLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHT 325
           EF++ F  F + GT K    EL  +MR+LG +PT AEL+  +AE                
Sbjct: 11  EFKDAFVQFDKEGTGKIATRELGTLMRTLGQNPTEAELQDLIAE---------------- 54
Query: 326 HSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKS 385
                            A+   +G+L+F +F  +M    +  D  +E+ +AFK  D    
Sbjct: 55  -----------------AENNNNGQLNFTEFCGIMAKQMRETDTEEEMREAFKIFDRDGD 97
Query: 386 GTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFV 430
           G +    L+ V++N GE ++ +E+D++ REA+   +  + YE+FV
Sbjct: 98  GFISPAELRFVMINLGEKVTDEEIDEMIREADFDGDGMINYEEFV 142

>pdb|2LHI|A Chain A, Solution Structure Of Ca2+CNA1 PEPTIDE-Bound Ycam Length = 176

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 74/151 (49%), Gaps = 36/151 (23%)
Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF +  NG+I +  EL+ +MRSLG+SP+ AE+                     
Sbjct: 12  EFKEAFALFDKDNNGSISS-SELATVMRSLGLSPSEAEVN-------------------- 50
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                 D+  E+       D   + ++ F +FL +M    K+ D  +E+++AFK  D   
Sbjct: 51  ------DLMNEI-------DVDGNHQIEFSEFLALMSRQLKSNDSEQELLEAFKVFDKNG 97
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFRE 415
            G + A  LKHVL + GE L+  EVD + RE
Sbjct: 98  DGLISAAELKHVLTSIGEKLTDAEVDDMLRE 128

>pdb|1LKJ|A Chain A, Nmr Structure Of Apo Calmodulin From Yeast Saccharomyces Cerevisiae Length = 146

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/153 (31%), Positives = 73/153 (47%), Gaps = 36/153 (23%)
Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF +  NG+I +  EL+ +MRSLG+SP+ AE+   + E               
Sbjct: 11  EFKEAFALFDKDNNGSISS-SELATVMRSLGLSPSEAEVNDLMNE--------------- 54
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                              D   + ++ F +FL +M    K+ D  +E+++AFK  D   
Sbjct: 55  ------------------IDVDGNHQIEFSEFLALMSRQLKSNDSEQELLEAFKVFDKNG 96
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREAN 417
            G + A  LKHVL + GE L+  EVD + RE +
Sbjct: 97  DGLISAAELKHVLTSIGEKLTDAEVDDMLREVS 129

>pdb|4DS7|A Chain A, Crystal Structure Of Yeast Calmodulin Bound To The C-Terminal Fragment Of Spindle Pole Body Protein Spc110 Length = 147

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 70/151 (46%), Gaps = 36/151 (23%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++  G+I +  EL+ +MRSLG+SP+ AE                      
Sbjct: 12  EFKEAFALFDKDNSGSI-SASELATVMRSLGLSPSEAE---------------------- 48
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                      V D     D   +  + F +FL +M    K  D  +E+++AFK  D   
Sbjct: 49  -----------VADLMNEIDVDGNHAIEFSEFLALMSRQLKCNDSEQELLEAFKVFDKNG 97
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFRE 415
            G + A  LKHVL + GE L+  EVD++ RE
Sbjct: 98  DGLISAAELKHVLTSIGEKLTDAEVDEMLRE 128

>pdb|2OBH|A Chain A, Centrin-Xpc Peptide Length = 143

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 53/172 (30%), Positives = 80/172 (46%), Gaps = 44/172 (25%)
Query: 267 EFRECFFLFARNGTIKTLD--ELSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFL 320
           E RE F LF  +GT  T+D  EL V MR+LG  P   E+KK ++E      GK++F DFL
Sbjct: 7   EIREAFDLFDADGT-GTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFGDFL 65
Query: 321 KVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAA 380
            VM      +D  +E++ AFK  D  ++GK+SF                           
Sbjct: 66  TVMTQKMSEKDTKEEILKAFKLFDDDETGKISF--------------------------- 98
Query: 381 DTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
                     K LK V    GE L+ +E+ ++  EA+   + +V  ++F++I
Sbjct: 99  ----------KNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQEFLRI 140

>pdb|3QRX|A Chain A, Chlamydomonas Reinhardtii Centrin Bound To Melittin Length = 169

Iteration: 1
 Score = 68.2 bits (165), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 36/168 (21%)
Query: 267 EFRECFFLFARNGTIKTLD--ELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           E RE F LF  +G+  T+D  EL V MR+LG  P   E+KK ++E               
Sbjct: 29  EIREAFDLFDTDGS-GTIDAKELKVAMRALGFEPKKEEIKKMISE--------------- 72
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                              D   SG + F +FL +M       D  +E++ AF+  D   
Sbjct: 73  ------------------IDKDGSGTIDFEEFLTMMTAKMGERDSREEILKAFRLFDDDN 114
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           SGT+  K L+ V    GE L+ +E+ ++  EA+   ++++  ++F++I
Sbjct: 115 SGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDEDEFIRI 162

>pdb|2LHH|A Chain A, Solution Structure Of Ca2+-Bound Ycam Length = 128

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 36/146 (24%)
Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF +  NG+I +  EL+ +MRSLG+SP+ AE+   + E               
Sbjct: 11  EFKEAFALFDKDNNGSISS-SELATVMRSLGLSPSEAEVNDLMNE--------------- 54
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                              D   + ++ F +FL +M    K+ D  +E+++AFK  D   
Sbjct: 55  ------------------IDVDGNHQIEFSEFLALMSRQLKSNDSEQELLEAFKVFDKNG 96
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVD 410
            G + A  LKHVL + GE L+  E++
Sbjct: 97  DGLISAAELKHVLTSIGEKLTDAELE 122

>pdb|2BL0|B Chain B, Physarum Polycephalum Myosin Ii Regulatory Domain Length = 145

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/173 (27%), Positives = 85/173 (49%), Gaps = 36/173 (20%)
Query: 267 EFRECFFLFARNGTIK-TLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHT 325
           + +ECF +F ++   K +++EL   +RSLG +PT AEL        G+L+  +F      
Sbjct: 6   QIQECFQIFDKDNDGKVSIEELGSALRSLGKNPTNAELNTI----KGQLNAKEF------ 55
Query: 326 HSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKS 385
                D+       FK              + K + T ++     KE++DAF+A D   +
Sbjct: 56  -----DLA-----TFKTV------------YRKPIKTPTEQS---KEMLDAFRALDKEGN 90
Query: 386 GTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAPVP 438
           GT+    L+ +L+N G+ L+S EV+++ +E +V+ +  + YE FV +     P
Sbjct: 91  GTIQEAELRQLLLNLGDALTSSEVEELMKEVSVSGDGAINYESFVDMLVTGYP 143

>pdb|1BR1|B Chain B, Smooth Muscle Myosin Motor Domain-Essential Light Chain Complex With Mgadp.Alf4 Bound At The Active Site Length = 150

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 76/170 (44%), Gaps = 35/170 (20%)
Query: 267 EFRECFFLFARNGTIKTL-DELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHT 325
           EF+E F LF R G  K L  +   +MR+LG +PT AE+ K L                  
Sbjct: 10  EFKEAFQLFDRTGDGKILYSQCGDVMRALGQNPTNAEVMKVLGN---------------- 53
Query: 326 HSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIP--KEVVDAFKAADTT 383
                  PK        +D      L F  FL +M T +K +D    ++ V+  +  D  
Sbjct: 54  -------PK--------SDEMNLKTLKFEQFLPMMQTIAKNKDQGCFEDYVEGLRVFDKE 98
Query: 384 KSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA 433
            +GTV    ++HVLV  GE ++ +EV+Q+    +   N  + YE+ V++ 
Sbjct: 99  GNGTVMGAEIRHVLVTLGEKMTEEEVEQLVA-GHEDSNGCINYEELVRMV 147

>pdb|3KF9|A Chain A, Crystal Structure Of The SdcenSKMLCK COMPLEX Length = 149

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 44/172 (25%)
Query: 267 EFRECFFLFARNGTIKTLD--ELSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFL 320
           E RE F LF  +G+  T+D  EL V MR+LG  P   E+KK +A+      G + F +FL
Sbjct: 9   EIREAFDLFDTDGS-GTIDAKELKVAMRALGFEPKKEEIKKMIADIDKDGSGTIDFEEFL 67
Query: 321 KVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAA 380
           ++M       D  +E++ AF+  D  ++GK+SF                           
Sbjct: 68  QMMTAKMGERDSREEIMKAFRLFDDDETGKISF--------------------------- 100
Query: 381 DTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
                     K LK V    GE ++ +E+ ++  EA+   + +V  E+F +I
Sbjct: 101 ----------KNLKRVAKELGENMTDEELQEMIDEADRDGDGEVNEEEFFRI 142

>pdb|3J04|C Chain C, Em Structure Of The Heavy Meromyosin Subfragment Of Chick Smooth Muscle Myosin With Regulatory Light Chain In Phosphorylated State Length = 148

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 77/172 (44%), Gaps = 35/172 (20%)
Query: 267 EFRECFFLFARNGTIKTL-DELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHT 325
           EF+E F LF R G  K L  +   +MR+LG +PT AE+ K L                  
Sbjct: 8   EFKEAFQLFDRTGDGKILYSQCGDVMRALGQNPTNAEVMKVLGN---------------- 51
Query: 326 HSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIP--KEVVDAFKAADTT 383
                  PK        +D      L F  FL +M T +K +D    ++ V+  +  D  
Sbjct: 52  -------PK--------SDEMNLKTLKFEQFLPMMQTIAKNKDQGCFEDYVEGLRVFDKE 96
Query: 384 KSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
            +GTV    ++HVLV  GE ++ +EV+Q+    +   N  + YE+ V++  +
Sbjct: 97  GNGTVMGAEIRHVLVTLGEKMTEEEVEQLVA-GHEDSNGCINYEELVRMVLS 147

>pdb|2KXW|A Chain A, Structure Of The C-Domain Fragment Of Apo Calmodulin Bound To The Iq Motif Of Nav1.2 Length = 73

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 45/68 (66%)
Query: 365 KAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKV 424
           K +D  +E+++AFK  D   +G + A  L+HV+ N GE L+  EVD++ REA++  +  +
Sbjct: 2   KEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHI 61
Query: 425 RYEDFVKI 432
            YE+FV++
Sbjct: 62  NYEEFVRM 69

>pdb|2RO9|A Chain A, Solution Structure Of Calcium Bound Soybean Calmodulin Isoform 1 C-Terminal Domain Length = 69

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 46/68 (67%)
Query: 368 DIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYE 427
           D  +E+ +AF+  D  ++G + A  L+HV+ N GE L+ +EVD++ REA+V  + ++ YE
Sbjct: 1   DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYE 60
Query: 428 DFVKIACA 435
           +FVK+  A
Sbjct: 61  EFVKVMMA 68

>pdb|2KZ2|A Chain A, Calmodulin, C-Terminal Domain, F92e Mutant Length = 94

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 46/71 (64%)
Query: 365 KAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKV 424
           K  D  +E+ +AF+  D   +G + A  L+HV+ N GE L+ +EVD++ REA++  + +V
Sbjct: 23  KDTDSEEEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQV 82
Query: 425 RYEDFVKIACA 435
            YE+FV++  A
Sbjct: 83  NYEEFVQMMTA 93

>pdb|2RRT|A Chain A, Solution Structure Of Magnesium-Bound Form Of Calmodulin C-Domain E104dE140D MUTANT Length = 72

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 45/68 (66%)
Query: 368 DIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYE 427
           D  +E+ +AF+  D   +G + A  L+HV+ N GE L+ +EVD++ REA++  + +V YE
Sbjct: 4   DSEEEIREAFRVFDKDGNGYISAADLRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 63
Query: 428 DFVKIACA 435
           DFV++  A
Sbjct: 64  DFVQMMTA 71

>pdb|2KN2|A Chain A, Solution Structure Of The C-Terminal Domain Of Soybean Calmodulin Isoform 4 Fused With The Calmodulin-Binding Domain Of Ntmkp1 Length = 92

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 46/65 (70%)
Query: 368 DIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYE 427
           D  +E+ +AFK  D  ++G + A  L+HV++N GE L+ +EV+Q+ +EA++  + +V YE
Sbjct: 6   DAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYE 65
Query: 428 DFVKI 432
           +FVK+
Sbjct: 66  EFVKM 70

>pdb|2ROB|A Chain A, Solution Structure Of Calcium Bound Soybean Calmodulin Isoform 4 C-Terminal Domain Length = 70

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 46/65 (70%)
Query: 368 DIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYE 427
           D  +E+ +AFK  D  ++G + A  L+HV++N GE L+ +EV+Q+ +EA++  + +V YE
Sbjct: 1   DAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYE 60
Query: 428 DFVKI 432
           +FVK+
Sbjct: 61  EFVKM 65

>pdb|1YRU|B Chain B, Crystal Structure Analysis Of The Adenylyl Cyclaes Catalytic Domain Of Adenylyl Cyclase Toxin Of Bordetella Pertussis In Presence Of C-Terminal Calmodulin And 1mm Calcium Chloride Length = 74

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 46/71 (64%)
Query: 365 KAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKV 424
           K  D  +E+ +AF+  D   +G + A  L+HV+ N GE L+ +EVD++ REA++  + +V
Sbjct: 3   KDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQV 62
Query: 425 RYEDFVKIACA 435
            YE+FV++  A
Sbjct: 63  NYEEFVQMMTA 73

>pdb|1CMF|A Chain A, Nmr Solution Structure Of Apo Calmodulin Carboxy-Terminal Domain Length = 73

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 46/71 (64%)
Query: 365 KAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKV 424
           K  D  +E+ +AF+  D   +G + A  L+HV+ N GE L+ +EVD++ REA++  + +V
Sbjct: 2   KDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQV 61
Query: 425 RYEDFVKIACA 435
            YE+FV++  A
Sbjct: 62  NYEEFVQMMTA 72

>pdb|1ZOT|B Chain B, Crystal Structure Analysis Of The CyaaC-Cam With Pmeapp Length = 69

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 45/68 (66%)
Query: 368 DIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYE 427
           D  +E+ +AF+  D   +G + A  L+HV+ N GE L+ +EVD++ REA++  + +V YE
Sbjct: 2   DSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 61
Query: 428 DFVKIACA 435
           +FV++  A
Sbjct: 62  EFVQMMTA 69

>pdb|1FW4|A Chain A, Crystal Structure Of E. Coli Fragment Tr2c From Calmodulin To 1.7 A Resolution Length = 71

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 45/68 (66%)
Query: 368 DIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYE 427
           D  +E+ +AF+  D   +G + A  L+HV+ N GE L+ +EVD++ REA++  + +V YE
Sbjct: 3   DSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 62
Query: 428 DFVKIACA 435
           +FV++  A
Sbjct: 63  EFVQMMTA 70

>pdb|2COL|B Chain B, Crystal Structure Analysis Of CyaaC-Cam With Pyrophosphate Length = 67

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 44/65 (67%)
Query: 368 DIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYE 427
           D  +E+ +AF+  D   +G + A  L+HV+ N GE L+ +EVD++ REA++  + +V YE
Sbjct: 2   DSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 61
Query: 428 DFVKI 432
           +FV++
Sbjct: 62  EFVQM 66

>pdb|1F71|A Chain A, Refined Solution Structure Of Calmodulin C-Terminal Domain Length = 67

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 44/65 (67%)
Query: 371 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFV 430
           +E+ +AF+  D   +G + A  L+HV+ N GE L+ +EVD++ REA++  + +V YE+FV
Sbjct: 2   EEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 61
Query: 431 KIACA 435
           ++  A
Sbjct: 62  QMMTA 66

>pdb|3IFK|A Chain A, Crystal Structure Of Calcium-Saturated Calmodulin N-Terminal Domain Fragment, Residues 1-90 Length = 90

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 7/81 (8%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYL----AEKGGKLSFPDFL 320
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+  +    A+  G + FP+FL
Sbjct: 11  EFKEAFSLFDKDGDGTITT-KELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL 69
Query: 321 KVMHTHSKAEDIPKEVVDAFK 341
            +M    K  D  +E+ +AF+
Sbjct: 70  TMMARKMKDTDSEEEIREAFR 90

>pdb|2W4A|C Chain C, Isometrically Contracting Insect Asynchronous Flight Muscle Length = 145

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/172 (28%), Positives = 76/172 (44%), Gaps = 43/172 (25%)
Query: 267 EFRECFFLFARNGTIK-TLDELSVIMRSLGMSPTIAELKKYLAE------KGGKLSFPDF 319
           +F+E F LF R G  K TL ++  I+R+LG +PT AE+ K L           K++F +F
Sbjct: 5   DFKEAFLLFDRTGDAKITLSQVGDIVRALGQNPTNAEINKILGNPSKEEMNAKKITFEEF 64
Query: 320 LKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKA 379
           L ++                  AA+    G  +F DF                 V+  + 
Sbjct: 65  LPMLQA----------------AANNKDQG--TFEDF-----------------VEGLRV 89
Query: 380 ADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVK 431
            D   +GTV    L+HVL   GE ++ +EV+++ +      N  + YE FVK
Sbjct: 90  FDKEGNGTVMGAELRHVLATLGEKMTEEEVEELMK-GQEDSNGCINYEAFVK 140

>pdb|1OE9|B Chain B, Crystal Structure Of Myosin V Motor With Essential Light Chain - Nucleotide-Free Length = 151

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 35/168 (20%)
Query: 267 EFRECFFLFARNGTIKTL-DELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHT 325
           EF+E F LF R G  K L  +   +MR+LG +PT AE+ K L                  
Sbjct: 11  EFKEAFELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGN---------------- 54
Query: 326 HSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSK--AEDIPKEVVDAFKAADTT 383
                  PK        +D  KS ++ F  FL ++   +K   +   ++ ++ F+  D  
Sbjct: 55  -------PK--------SDELKSRRVDFETFLPMLQAVAKNRGQGTYEDYLEGFRVFDKE 99
Query: 384 KSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVK 431
            +G V    L+HVL   GE ++ +EV+ +    +   N  + YE F+K
Sbjct: 100 GNGKVMGAELRHVLTTLGEKMTEEEVETVLA-GHEDSNGCINYEAFLK 146

>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex Length = 727

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Query: 62  HAFLLS-LSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNAS 120
           HA  LS L    I   IFK D +  L L  NSLT LP +I  L+NLRVL L+ N L   S
Sbjct: 227 HALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRL--TS 284
Query: 121 IPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGN 162
           +P  L  C  L + Y  +N++  LP    ++  L  +   GN
Sbjct: 285 LPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGN 326

>pdb|3JTD|C Chain C, Calcium-Free Scallop Myosin Regulatory Domain With Elc-D19a Point Mutation Length = 156

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 338 DAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPK----EVVDAFKAADTTKSGTVPAKYL 393
           D F    T K G+ S P F + +  +    D  +    + ++AFK  D    G +    L
Sbjct: 48  DVFAVGGTHKMGEKSLP-FEEFLPAYEGLMDCEQGTFADYMEAFKTFDREGQGFISGAEL 106
Query: 394 KHVLVNWGEGLSSKEVDQIFREANVT--MNSKVRYEDFV-KIACAPVPD 439
           +HVL   GE LS ++VD+I +  ++   +   V+YEDFV K+   P PD
Sbjct: 107 RHVLTALGERLSDEDVDEIIKLTDLQEDLEGNVKYEDFVKKVMAGPYPD 155

>pdb|1WDC|C Chain C, Scallop Myosin Regulatory Domain Length = 156

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 338 DAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPK----EVVDAFKAADTTKSGTVPAKYL 393
           D F    T K G+ S P F + +  +    D  +    + ++AFK  D    G +    L
Sbjct: 48  DVFAVGGTHKMGEKSLP-FEEFLPAYEGLMDCEQGTFADYMEAFKTFDREGQGFISGAEL 106
Query: 394 KHVLVNWGEGLSSKEVDQIFREANV--TMNSKVRYEDFV-KIACAPVPD 439
           +HVL   GE LS ++VD+I +  ++   +   V+YEDFV K+   P PD
Sbjct: 107 RHVLTALGERLSDEDVDEIIKLTDLQEDLEGNVKYEDFVKKVMAGPYPD 155

>pdb|2BL0|C Chain C, Physarum Polycephalum Myosin Ii Regulatory Domain Length = 142

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 7/101 (6%)
Query: 333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSK---AEDIPKEVVDAFKAADTTKSGTVP 389
           P    + F  AD T +GK+ FP+FL +M    K   +EDI ++   AF+  D   +G +P
Sbjct: 41  PAAFNEMFNEADATGNGKIQFPEFLSMMGRRMKQTTSEDILRQ---AFRTFDPEGTGYIP 97
Query: 390 AKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFV 430
              L+  L+N G+ L   E  + F     T   ++RY++F+
Sbjct: 98  KAALQDALLNLGDRLKPHEFAE-FLGITETEKGQIRYDNFI 137

>pdb|1GGW|A Chain A, Cdc4p From Schizosaccharomyces Pombe Length = 140

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 76/169 (44%), Gaps = 37/169 (21%)
Query: 268 FRECFFLFARNGTIKT-LDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTH 326
           +++ F LF R+GT +     +  ++R+ G +PT+AE+ +  +    ++    FL+V++  
Sbjct: 7   YKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAEITEIESTLPAEVDMEQFLQVLN-R 65
Query: 327 SKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSG 386
               D+P +                                  P+E V  F+  D   +G
Sbjct: 66  PNGFDMPGD----------------------------------PEEFVKGFQVFDKDATG 91
Query: 387 TVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
            +    L++VL + GE LS++E+D++ +   V  +  V Y DFV++  A
Sbjct: 92  MIGVGELRYVLTSLGEKLSNEEMDELLKGVPVK-DGMVNYHDFVQMILA 139

>pdb|2GGM|A Chain A, Human Centrin 2 Xeroderma Pigmentosum Group C Protein Complex Length = 172

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 48/89 (53%)
Query: 344 DTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEG 403
           D   +GK +F DFL V       +D  +E++ AFK  D  ++G +  K LK V    GE 
Sbjct: 77  DKEGTGKXNFGDFLTVXTQKXSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGEN 136
Query: 404 LSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           L+ +E+ +   EA+   + +V  ++F++I
Sbjct: 137 LTDEELQEXIDEADRDGDGEVSEQEFLRI 165

>pdb|2EC6|C Chain C, Placopecten Striated Muscle Myosin Ii Length = 156

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 338 DAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPK----EVVDAFKAADTTKSGTVPAKYL 393
           D F    T K G+ S P F + +  +    D  +    + ++AFK  D    G +    L
Sbjct: 48  DVFAVGGTHKMGEKSLP-FEEFLPAYEGLMDCEQGTFADYMEAFKTFDREGQGFISGAEL 106
Query: 394 KHVLVNWGEGLSSKEVDQIFREANVT--MNSKVRYEDFV-KIACAPVPD 439
           +HVL   GE LS +EVD+I    ++   +   V+YE+FV K+   P PD
Sbjct: 107 RHVLSGLGERLSDEEVDEIINLTDLQEDLEGNVKYEEFVKKVMAGPYPD 155

>pdb|2OS8|C Chain C, Rigor-Like Structures Of Muscle Myosins Reveal Key Mechanical Elements In The Transduction Pathways Of This Allosteric Motor Length = 157

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 338 DAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPK----EVVDAFKAADTTKSGTVPAKYL 393
           D F    T K G+ S P F + +  +    D  +    + ++AFK  D    G +    L
Sbjct: 49  DVFAVGGTHKMGEKSLP-FEEFLPAYEGLMDCEQGTYADYMEAFKTFDREGQGFISGAEL 107
Query: 394 KHVLVNWGEGLSSKEVDQIFREANVT--MNSKVRYEDFV-KIACAPVPD 439
           +HVL   GE LS +EVD+I    ++   +   V+YE+FV K+   P PD
Sbjct: 108 RHVLSGLGERLSDEEVDEIINLTDLQEDLEGNVKYEEFVKKVMTGPYPD 156

>pdb|2LLO|A Chain A, Solution Nmr-Derived Structure Of Calmodulin N-Lobe Bound With Er Alpha Peptide Length = 80

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYL----AEKGGKLSFPDFL 320
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+  +    A+  G + FP+FL
Sbjct: 11  EFKEAFSLFDKDGDGTITT-KELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL 69
Query: 321 KVMHTHSKAED 331
            +M    K  D
Sbjct: 70  TMMARKMKDTD 80

>pdb|3PN7|C Chain C, Visualizing New Hinges And A Potential Major Source Of Compliance In The Lever Arm Of Myosin Length = 156

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 338 DAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPK----EVVDAFKAADTTKSGTVPAKYL 393
           D F    T K G+ S P F + +  +    D  +    + ++AFK  D    G +    L
Sbjct: 48  DVFAVGGTHKMGEKSLP-FEEFLPAYEGLMDCEQGTYADYMEAFKTFDREGQGFISGAEL 106
Query: 394 KHVLVNWGEGLSSKEVDQIFREANVT--MNSKVRYEDFV-KIACAPVPD 439
           +HVL   GE LS +EVD+I    ++   +   V+YE+FV K+   P PD
Sbjct: 107 RHVLSGLGERLSDEEVDEIINLTDLQEDLEGNVKYEEFVKKVMTGPYPD 155

>pdb|1M8Q|C Chain C, Molecular Models Of Averaged Rigor Crossbridges From Tomograms Of Insect Flight Muscle Length = 147

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 74/177 (41%), Gaps = 43/177 (24%)
Query: 262 KTPYLEFRECFFLFARNGTIK-TLDELSVIMRSLGMSPTIAELKKYLAE------KGGKL 314
           K    +F+E F LF R G  K T  ++  I R+LG +PT AE+ K L            +
Sbjct: 2   KAAADDFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNAAAI 61
Query: 315 SFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVV 374
           +F +FL ++                  AA+    G  +F DF                 V
Sbjct: 62  TFEEFLPMLQA----------------AANNKDQG--TFEDF-----------------V 86
Query: 375 DAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVK 431
           +  +  D   +GTV    L+HVL   GE ++ +EV+++ +      N  + YE FVK
Sbjct: 87  EGLRVFDKEGNGTVMGAELRHVLATLGEKMTEEEVEELMK-GQEDSNGCINYEAFVK 142

>pdb|2MYS|C Chain C, Myosin Subfragment-1, Alpha Carbon Coordinates Only For The Two Light Chains Length = 149

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 74/177 (41%), Gaps = 43/177 (24%)
Query: 262 KTPYLEFRECFFLFARNGTIK-TLDELSVIMRSLGMSPTIAELKKYLAE------KGGKL 314
           K    +F+E F LF R G  K T  ++  I R+LG +PT AE+ K L            +
Sbjct: 4   KAAADDFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNAAAI 63
Query: 315 SFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVV 374
           +F +FL ++                  AA+    G  +F DF                 V
Sbjct: 64  TFEEFLPMLQA----------------AANNKDQG--TFEDF-----------------V 88
Query: 375 DAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVK 431
           +  +  D   +GTV    L+HVL   GE ++ +EV+++ +      N  + YE FVK
Sbjct: 89  EGLRVFDKEGNGTVMGAELRHVLATLGEKMTEEEVEELMK-GQEDSNGCINYEAFVK 144

>pdb|1DFK|Z Chain Z, Nucleotide-Free Scallop Myosin S1-Near Rigor State Length = 152

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
Query: 338 DAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPK----EVVDAFKAADTTKSGTVPAKYL 393
           D F    T K G+ S P F + +  +    D  +    + ++AFK  D    G +    L
Sbjct: 46  DVFAVGGTHKMGEKSLP-FEEFLPAYEGLMDCEQGTFADYMEAFKTFDREGQGFISGAEL 104
Query: 394 KHVLVNWGEGLSSKEVDQIFREANVT--MNSKVRYEDFV-KIACAPVP 438
           +HVL   GE LS ++VD+I +  ++   +   V+YEDFV K+   P P
Sbjct: 105 RHVLTALGERLSDEDVDEIIKLTDLQEDLEGNVKYEDFVKKVMAGPYP 152

>pdb|2W4T|Z Chain Z, Isometrically Contracting Insect Asynchronous Flight Muscle Length = 151

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
Query: 338 DAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPK----EVVDAFKAADTTKSGTVPAKYL 393
           D F    T K G+ S P F + +  +    D  +    + ++AFK  D    G +    L
Sbjct: 45  DVFAVGGTHKMGEKSLP-FEEFLPAYEGLMDCEQGTFADYMEAFKTFDREGQGFISGAEL 103
Query: 394 KHVLVNWGEGLSSKEVDQIFREANVT--MNSKVRYEDFV-KIACAPVP 438
           +HVL   GE LS ++VD+I +  ++   +   V+YEDFV K+   P P
Sbjct: 104 RHVLTALGERLSDEDVDEIIKLTDLQEDLEGNVKYEDFVKKVMAGPYP 151

>pdb|1KK8|C Chain C, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached Conformation Length = 154

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
Query: 338 DAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPK----EVVDAFKAADTTKSGTVPAKYL 393
           D F    T K G+ S P F + +  +    D  +    + ++AFK  D    G +    L
Sbjct: 48  DVFAVGGTHKMGEKSLP-FEEFLPAYEGLMDCEQGTFADYMEAFKTFDREGQGFISGAEL 106
Query: 394 KHVLVNWGEGLSSKEVDQIFREANVT--MNSKVRYEDFV-KIACAPVP 438
           +HVL   GE LS ++VD+I +  ++   +   V+YEDFV K+   P P
Sbjct: 107 RHVLTALGERLSDEDVDEIIKLTDLQEDLEGNVKYEDFVKKVMAGPYP 154

>pdb|1M39|A Chain A, Solution Structure Of The C-Terminal Fragment (F86-I165) Of The Human Centrin 2 In Calcium Saturated Form Length = 89

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 351 LSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVD 410
           ++F DFL VM      +D  +E++ AFK  D  ++G +  K LK V    GE L+ +E+ 
Sbjct: 1   MNFGDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQ 60
Query: 411 QIFREANVTMNSKVRYEDFVKI 432
           ++  EA+   + +V  ++F++I
Sbjct: 61  EMIDEADRDGDGEVSEQEFLRI 82

>pdb|1J7O|A Chain A, Solution Structure Of Calcium-calmodulin N-terminal Domain Length = 76

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 7/63 (11%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYL----AEKGGKLSFPDFL 320
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+  +    A+  G + FP+FL
Sbjct: 11  EFKEAFSLFDKDGDGTITT-KELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL 69
Query: 321 KVM 323
            +M
Sbjct: 70  TMM 72

>pdb|1F70|A Chain A, Refined Solution Structure Of Calmodulin N-Terminal Domain Length = 76

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 7/63 (11%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYL----AEKGGKLSFPDFL 320
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+  +    A+  G + FP+FL
Sbjct: 11  EFKEAFSLFDKDGDGTITT-KELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL 69
Query: 321 KVM 323
            +M
Sbjct: 70  TMM 72

>pdb|2JTZ|A Chain A, Solution Structure And Chemical Shift Assignments Of The F104-To-5-Flurotryptophan Mutant Of Cardiac Troponin C Length = 161

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 75/172 (43%), Gaps = 42/172 (24%)
Query: 267 EFRECFFLF---ARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVM 323
           EF+  F +F   A +G+I T  EL  +MR LG +PT  EL++ + E              
Sbjct: 19  EFKAAFDIFVLGAEDGSISTK-ELGKVMRMLGQNPTPEELQEMIDE-------------- 63
Query: 324 HTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAED----IPKEVVDAFKA 379
                               D   SG + F +FL VM   S  +D      +E+ D F+ 
Sbjct: 64  -------------------VDEDGSGTVDFDEFL-VMMVRSMKDDSKGKSEEELSDLFRM 103
Query: 380 ADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVK 431
            D    G +    LK +L   GE ++  +++++ ++ +   + ++ Y++F++
Sbjct: 104 XDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLE 155

>pdb|3B32|A Chain A, Crystal Structure Of Calcium-Saturated Calmodulin N-Terminal Domain Fragment, Residues 1-75 Length = 75

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 7/63 (11%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYL----AEKGGKLSFPDFL 320
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+  +    A+  G + FP+FL
Sbjct: 11  EFKEAFSLFDKDGDGTITT-KELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL 69
Query: 321 KVM 323
            +M
Sbjct: 70  TMM 72

>pdb|1AK8|A Chain A, Nmr Solution Structure Of Cerium-Loaded Calmodulin Amino- Terminal Domain (Ce2-Tr1c), 23 Structures Length = 76

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 7/63 (11%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYL----AEKGGKLSFPDFL 320
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+  +    A+  G + FP+FL
Sbjct: 12  EFKEAFSLFDKDGDGTITT-KELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL 70
Query: 321 KVM 323
            +M
Sbjct: 71  TMM 73

>pdb|2LQC|A Chain A, Nmr Solution Structure Of A Ca2+-Calmodulin With A Binding Motif (Nscate) Peptide From The N-Terminal Cytoplasmic Domain Of The L-Type Voltage-Cated Calcium Channel Alpha1c Subunit Length = 77

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 7/63 (11%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYL----AEKGGKLSFPDFL 320
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+  +    A+  G + FP+FL
Sbjct: 11  EFKEAFSLFDKDGDGTITT-KELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL 69
Query: 321 KVM 323
            +M
Sbjct: 70  TMM 72

>pdb|1AJ4|A Chain A, Structure Of Calcium-Saturated Cardiac Troponin C, Nmr, 1 Structure Length = 161

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 76/172 (44%), Gaps = 42/172 (24%)
Query: 267 EFRECFFLF---ARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVM 323
           EF+  F +F   A +G+I T  EL  +MR LG +PT  EL++ + E              
Sbjct: 19  EFKAAFDIFVLGAEDGSISTK-ELGKVMRMLGQNPTPEELQEMIDE-------------- 63
Query: 324 HTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAED----IPKEVVDAFKA 379
                               D   SG + F +FL VM   S  +D      +E+ D F+ 
Sbjct: 64  -------------------VDEDGSGTVDFDEFL-VMMVRSMKDDSKGKTEEELSDLFRM 103
Query: 380 ADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVK 431
            D    G +  + LK +L   GE ++  +++++ ++ +   + ++ Y++F++
Sbjct: 104 FDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLE 155

>pdb|2I08|A Chain A, Solvation Effect In Conformational Changes Of Ef-Hand Proteins: X-Ray Structure Of Ca2+-Saturated Double Mutant Q41l-K75i Of N-Domain Of Calmodulin Length = 78

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 7/63 (11%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYL----AEKGGKLSFPDFL 320
           EF+E F L+ ++G  TI T  EL  +MRSLG++PT AEL+  +    A+  G + FP+FL
Sbjct: 11  EFKEAFSLYDKDGDGTITT-KELGTVMRSLGLNPTEAELQDMINEVDADGNGTIDFPEFL 69
Query: 321 KVM 323
            +M
Sbjct: 70  TMM 72

>pdb|3UCT|A Chain A, Structure Of Mn2+-Bound N-Terminal Domain Of Calmodulin In The Presence Of Zn2+ Length = 79

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 7/63 (11%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYL----AEKGGKLSFPDFL 320
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+  +    A+  G + FP+FL
Sbjct: 11  EFKEAFSLFDKDGDGTITT-KELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL 69
Query: 321 KVM 323
            +M
Sbjct: 70  TMM 72

>pdb|1DTL|A Chain A, Crystal Structure Of Calcium-Saturated (3ca2+) Cardiac Troponin C Complexed With The Calcium Sensitizer Bepridil At 2.15 A Resolution Length = 161

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 76/172 (44%), Gaps = 42/172 (24%)
Query: 267 EFRECFFLF---ARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVM 323
           EF+  F +F   A +G+I T  EL  +MR LG +PT  EL++ + E              
Sbjct: 19  EFKAAFDIFVLGAEDGSISTK-ELGKVMRMLGQNPTPEELQEMIDE-------------- 63
Query: 324 HTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAED----IPKEVVDAFKA 379
                               D   SG + F +FL VM   S  +D      +E+ D F+ 
Sbjct: 64  -------------------VDEDGSGTVDFDEFL-VMMVRSMKDDSKGKSEEELSDLFRM 103
Query: 380 ADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVK 431
            D    G +  + LK +L   GE ++  +++++ ++ +   + ++ Y++F++
Sbjct: 104 FDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLE 155

>pdb|1SW8|A Chain A, Solution Structure Of The N-Terminal Domain Of Human N60d Calmodulin Refined With Paramagnetism Based Strategy Length = 79

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 7/63 (11%)
Query: 267 EFRECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYL----AEKGGKLSFPDFL 320
           EF+E F LF ++G  TI T  EL  +MRSLG +PT AEL+  +    A+  G + FP+FL
Sbjct: 11  EFKEAFSLFDKDGDGTITT-KELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFL 69
Query: 321 KVM 323
            +M
Sbjct: 70  TMM 72

>pdb|2JT0|A Chain A, Solution Structure Of F104w Cardiac Troponin C Length = 161

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 75/172 (43%), Gaps = 42/172 (24%)
Query: 267 EFRECFFLF---ARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVM 323
           EF+  F +F   A +G+I T  EL  +MR LG +PT  EL++ + E              
Sbjct: 19  EFKAAFDIFVLGAEDGSISTK-ELGKVMRMLGQNPTPEELQEMIDE-------------- 63
Query: 324 HTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAED----IPKEVVDAFKA 379
                               D   SG + F +FL VM   S  +D      +E+ D F+ 
Sbjct: 64  -------------------VDEDGSGTVDFDEFL-VMMVRSMKDDSKGKSEEELSDLFRM 103
Query: 380 ADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVK 431
            D    G +    LK +L   GE ++  +++++ ++ +   + ++ Y++F++
Sbjct: 104 WDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLE 155

>pdb|2RO8|A Chain A, Solution Structure Of Calcium Bound Soybean Calmodulin Isoform 1 N-Terminal Domain Length = 79

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 38/62 (61%), Gaps = 5/62 (8%)
Query: 267 EFRECFFLFARNGT-IKTLDELSVIMRSLGMSPTIAELKKYL----AEKGGKLSFPDFLK 321
           EF+E F LF ++G    T  EL  +MRSLG +PT AEL+  +    A+  G + FP+FL 
Sbjct: 11  EFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLN 70
Query: 322 VM 323
           +M
Sbjct: 71  LM 72

>pdb|1A2X|A Chain A, Complex Of Troponin C With A 47 Residue (1-47) Fragment Of Troponin I Length = 159

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 71/171 (41%), Gaps = 39/171 (22%)
Query: 267 EFRECFFLF-ARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHT 325
           EF+  F +F A  G   ++ EL  +MR LG +PT  EL   + E                
Sbjct: 18  EFKAAFDMFDADGGGDISVKELGTVMRMLGQTPTKEELDAIIEE---------------- 61
Query: 326 HSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDI----PKEVVDAFKAAD 381
                             D   SG + F +FL VM      ED      +E+ + F+  D
Sbjct: 62  -----------------VDEDGSGTIDFEEFL-VMMVRQMKEDAKGKSEEELAECFRIFD 103
Query: 382 TTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
               G + A+ L  +    GE ++ +E++ + ++ +   + ++ +++F+K+
Sbjct: 104 RNADGYIDAEELAEIFRASGEHVTDEEIESLMKDGDKNNDGRIDFDEFLKM 154

>pdb|1SCM|C Chain C, Structure Of The Regulatory Domain Of Scallop Myosin At 2.8 Angstroms Resolution Length = 149

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 7/104 (6%)
Query: 338 DAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPK----EVVDAFKAADTTKSGTVPAKYL 393
           D F    T K G+ S P F + +  +    D  +    + ++AFK  D    G +    L
Sbjct: 45  DVFAVGGTHKMGEKSLP-FEEFLPAYEGLMDCEQGTFADYMEAFKTFDREGQGFISGAEL 103
Query: 394 KHVLVNWGEGLSSKEVDQIFREANVT--MNSKVRYEDFVKIACA 435
           +HVL   GE LS ++VD+I +  ++   +   V+YEDFVK   A
Sbjct: 104 RHVLTALGERLSDEDVDEIIKLTDLQEDLEGNVKYEDFVKKVMA 147

>pdb|1LA0|A Chain A, Solution Structure Of Calcium Saturated Cardiac Troponin C In The Troponin C-Troponin I Complex Length = 161

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 75/172 (43%), Gaps = 42/172 (24%)
Query: 267 EFRECFFLF---ARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVM 323
           EF+  F +F   A +G I T  EL  +MR LG +PT  EL++ + E              
Sbjct: 19  EFKAAFDIFVLGAEDGCISTK-ELGKVMRMLGQNPTPEELQEMIDE-------------- 63
Query: 324 HTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFL----KVMHTHSKAEDIPKEVVDAFKA 379
                               D   SG + F +FL    + M   SK +   +E+ D F+ 
Sbjct: 64  -------------------VDEDGSGTVDFDEFLVMMVRCMKDDSKGK-TEEELSDLFRM 103
Query: 380 ADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVK 431
            D    G +  + LK +L   GE ++  +++++ ++ +   + ++ Y++F++
Sbjct: 104 FDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLE 155

>pdb|1TCF|A Chain A, Crystal Structure Of Calcium-Saturated Rabbit Skeletal Troponin C Length = 159

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 71/171 (41%), Gaps = 39/171 (22%)
Query: 267 EFRECFFLF-ARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHT 325
           EF+  F +F A  G   ++ EL  +MR LG +PT  EL   + E                
Sbjct: 18  EFKAAFDMFDADGGGDISVKELGTVMRMLGQTPTKEELDAIIEE---------------- 61
Query: 326 HSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDI----PKEVVDAFKAAD 381
                             D   SG + F +FL VM      ED      +E+ + F+  D
Sbjct: 62  -----------------VDEDGSGTIDFEEFL-VMMVRQMKEDAKGKSEEELAELFRIFD 103
Query: 382 TTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
               G + A+ L  +    GE ++ +E++ + ++ +   + ++ +++F+K+
Sbjct: 104 RNADGYIDAEELAEIFRASGEHVTDEEIESLMKDGDKNNDGRIDFDEFLKM 154

>pdb|4TNC|A Chain A, Refined Structure Of Chicken Skeletal Muscle Troponin C In The Two-Calcium State At 2-Angstroms Resolution Length = 162

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/181 (21%), Positives = 74/181 (40%), Gaps = 39/181 (21%)
Query: 257 KVFTFKTPYLEFRECFFLF-ARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLS 315
           + F  +    EF+  F +F A  G   +  EL  +MR LG +PT  EL   + E      
Sbjct: 11  RAFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEE------ 64
Query: 316 FPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDI----PK 371
                                       D   SG + F +FL VM      ED      +
Sbjct: 65  ---------------------------VDEDGSGTIDFEEFL-VMMVRQMKEDAKGKSEE 96
Query: 372 EVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVK 431
           E+ D F+  D    G +  + L  +L   GE ++ ++++ + ++++   + ++ +++F+K
Sbjct: 97  ELADCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLK 156
Query: 432 I 432
           +
Sbjct: 157 M 157

>pdb|2JT3|A Chain A, Solution Structure Of F153w Cardiac Troponin C Length = 161

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 75/172 (43%), Gaps = 42/172 (24%)
Query: 267 EFRECFFLF---ARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVM 323
           EF+  F +F   A +G+I T  EL  +MR LG +PT  EL++ + E              
Sbjct: 19  EFKAAFDIFVLGAEDGSISTK-ELGKVMRMLGQNPTPEELQEMIDE-------------- 63
Query: 324 HTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAED----IPKEVVDAFKA 379
                               D   SG + F +FL VM   S  +D      +E+ D F+ 
Sbjct: 64  -------------------VDEDGSGTVDFDEFL-VMMVRSMKDDSKGKSEEELSDLFRM 103
Query: 380 ADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVK 431
            D    G +    LK +L   GE ++  +++++ ++ +   + ++ Y+++++
Sbjct: 104 FDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEWLE 155

>pdb|5TNC|A Chain A, Refined Crystal Structure Of Troponin C From Turkey Skeletal Muscle At 2.0 Angstroms Resolution Length = 162

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/181 (21%), Positives = 74/181 (40%), Gaps = 39/181 (21%)
Query: 257 KVFTFKTPYLEFRECFFLF-ARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLS 315
           + F  +    EF+  F +F A  G   +  EL  +MR LG +PT  EL   + E      
Sbjct: 11  RAFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEE------ 64
Query: 316 FPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDI----PK 371
                                       D   SG + F +FL VM      ED      +
Sbjct: 65  ---------------------------VDEDGSGTIDFEEFL-VMMVRQMKEDAKGKSEE 96
Query: 372 EVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVK 431
           E+ D F+  D    G +  + L  +L   GE ++ ++++ + ++++   + ++ +++F+K
Sbjct: 97  ELEDCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLK 156
Query: 432 I 432
           +
Sbjct: 157 M 157

>pdb|2HF5|A Chain A, The Structure And Function Of A Novel Two-Site Calcium- Binding Fragment Of Calmodulin Length = 68

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 35/67 (52%)
Query: 335 EVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLK 394
           E+ D     D   +G + FP+FL +M    K  D  +E+ +AF+  D   +G + A  L+
Sbjct: 2   ELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELR 61
Query: 395 HVLVNWG 401
           HV+ N G
Sbjct: 62  HVMTNLG 68

>pdb|2JT8|A Chain A, Solution Structure Of The F153-To-5-Flurotryptophan Mutant Of Human Cardiac Troponin C Length = 161

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 74/172 (43%), Gaps = 42/172 (24%)
Query: 267 EFRECFFLF---ARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVM 323
           EF+  F +F   A +G+I T  EL  +MR LG +PT  EL++ + E              
Sbjct: 19  EFKAAFDIFVLGAEDGSISTK-ELGKVMRMLGQNPTPEELQEMIDE-------------- 63
Query: 324 HTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAED----IPKEVVDAFKA 379
                               D   SG + F +FL VM   S  +D      +E+ D F+ 
Sbjct: 64  -------------------VDEDGSGTVDFDEFL-VMMVRSMKDDSKGKSEEELSDLFRM 103
Query: 380 ADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVK 431
            D    G +    LK +L   GE ++  +++++ ++ +   + ++ Y++ ++
Sbjct: 104 FDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEXLE 155

>pdb|2W49|0 Chain 0, Isometrically Contracting Insect Asynchronous Flight Muscle Length = 159

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/181 (20%), Positives = 74/181 (40%), Gaps = 39/181 (21%)
Query: 257 KVFTFKTPYLEFRECFFLF-ARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLS 315
           + F  +    EF+  F +F A  G   +  EL  +MR LG +PT  EL   + E      
Sbjct: 8   RAFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEE------ 61
Query: 316 FPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDI----PK 371
                                       D   SG + F +FL VM      ED      +
Sbjct: 62  ---------------------------VDEDGSGTIDFEEFL-VMMVRQMKEDAKGKSEE 93
Query: 372 EVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVK 431
           E+ + F+  D    G +  + L  +L   GE ++ ++++ + ++++   + ++ +++F+K
Sbjct: 94  ELANCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLK 153
Query: 432 I 432
           +
Sbjct: 154 M 154

>pdb|1YTZ|C Chain C, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+- Activated State Length = 162

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/181 (20%), Positives = 74/181 (40%), Gaps = 39/181 (21%)
Query: 257 KVFTFKTPYLEFRECFFLF-ARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLS 315
           + F  +    EF+  F +F A  G   +  EL  +MR LG +PT  EL   + E      
Sbjct: 11  RAFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEE------ 64
Query: 316 FPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDI----PK 371
                                       D   SG + F +FL VM      ED      +
Sbjct: 65  ---------------------------VDEDGSGTIDFEEFL-VMMVRQMKEDAKGKSEE 96
Query: 372 EVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVK 431
           E+ + F+  D    G +  + L  +L   GE ++ ++++ + ++++   + ++ +++F+K
Sbjct: 97  ELANCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLK 156
Query: 432 I 432
           +
Sbjct: 157 M 157

>pdb|1ZMZ|A Chain A, Solution Structure Of The N-Terminal Domain (M1-S98) Of Human Centrin 2 Length = 98

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/63 (47%), Positives = 38/63 (60%), Gaps = 7/63 (11%)
Query: 267 EFRECFFLFARNGTIKTLD--ELSVIMRSLGMSPTIAELKKYLA----EKGGKLSFPDFL 320
           E RE F LF  +GT  T+D  EL V MR+LG  P   E+KK ++    E  GK++F DFL
Sbjct: 32  EIREAFDLFDADGT-GTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFGDFL 90
Query: 321 KVM 323
            VM
Sbjct: 91  TVM 93

>pdb|2LAN|A Chain A, Nmr Structure Of Ca2+-Bound Cabp1 N-Domain With Rdc Length = 167

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 75/173 (43%), Gaps = 41/173 (23%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAEL----KKYLAEKGGKLSFPDFL 320
           E RE F  F ++  G I   D L   MR++G  PT  EL    ++     GG + F DF+
Sbjct: 26  ELREAFREFDKDKDGYINCRD-LGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDFV 84
Query: 321 KVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAA 380
           ++M         PK + +                D + V           KE+ DAF+  
Sbjct: 85  ELMG--------PKLLAET--------------ADMIGV-----------KELRDAFREF 111
Query: 381 DTTKSGTVPAKYLKHVLVN-WGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           DT   G +    L+  +    G  +  +++++I R+ ++  + +V +E+FV++
Sbjct: 112 DTNGDGEISTSELREAMRKLLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFVRM 164

>pdb|3OX5|A Chain A, Crystal Structure Of The Calcium Sensor Calcium-Binding Protein 1 (Cabp1) Length = 153

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 75/173 (43%), Gaps = 41/173 (23%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAEL----KKYLAEKGGKLSFPDFL 320
           E RE F  F ++  G I   D L   MR++G  PT  EL    ++     GG + F DF+
Sbjct: 12  ELREAFREFDKDKDGYINCRD-LGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDFV 70
Query: 321 KVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAA 380
           ++M         PK + +                D + V           KE+ DAF+  
Sbjct: 71  ELMG--------PKLLAET--------------ADMIGV-----------KELRDAFREF 97
Query: 381 DTTKSGTVPAKYLKHVLVN-WGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           DT   G +    L+  +    G  +  +++++I R+ ++  + +V +E+FV++
Sbjct: 98  DTNGDGEISTSELREAMRKLLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFVRM 150

>pdb|3OX6|A Chain A, Crystal Structure Of The Calcium Sensor Calcium-Binding Protein 1 (Cabp1) Length = 153

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 75/173 (43%), Gaps = 41/173 (23%)
Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAEL----KKYLAEKGGKLSFPDFL 320
           E RE F  F ++  G I   D L   MR++G  PT  EL    ++     GG + F DF+
Sbjct: 12  ELREAFREFDKDKDGYINCRD-LGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDFV 70
Query: 321 KVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAA 380
           ++M         PK + +                D + V           KE+ DAF+  
Sbjct: 71  ELMG--------PKLLAET--------------ADMIGV-----------KELRDAFREF 97
Query: 381 DTTKSGTVPAKYLKHVL-VNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           DT   G +    L+  +    G  +  +++++I R+ ++  + +V +E+FV++
Sbjct: 98  DTNGDGEISTSELREAMRALLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFVRM 150

>pdb|1TNW|A Chain A, Nmr Solution Structure Of Calcium Saturated Skeletal Muscle Troponin C Length = 162

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/181 (20%), Positives = 73/181 (40%), Gaps = 39/181 (21%)
Query: 257 KVFTFKTPYLEFRECFFLF-ARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLS 315
           + F  +    EF+  F +F A  G   +  EL  +MR LG +PT  EL   + E      
Sbjct: 11  RAFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEE------ 64
Query: 316 FPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDI----PK 371
                                       D   SG + F +FL VM      ED      +
Sbjct: 65  ---------------------------VDEDGSGTIDFEEFL-VMMVRQMKEDAKGKSEE 96
Query: 372 EVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVK 431
           E+ + F+  D    G +  + L  +L   GE +  ++++ + ++++   + ++ +++F+K
Sbjct: 97  ELANCFRIFDKNADGFIDIEELGEILRATGEHVIEEDIEDLMKDSDKNNDGRIDFDEFLK 156
Query: 432 I 432
           +
Sbjct: 157 M 157

>pdb|3J04|B Chain B, Em Structure Of The Heavy Meromyosin Subfragment Of Chick Smooth Muscle Myosin With Regulatory Light Chain In Phosphorylated State Length = 143

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 70/168 (41%), Gaps = 40/168 (23%)
Query: 267 EFRECFFLF--ARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F +    R+G I   ++L  ++ S+G +PT   L+  ++E  G ++F  FL +  
Sbjct: 8   EFKEAFNMIDQNRDGFIDK-EDLHDMLASMGKNPTDEYLEGMMSEAPGPINFTMFLTMFG 66
Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                 D P++V+                                     +AF   D   
Sbjct: 67  EKLNGTD-PEDVIR------------------------------------NAFACFDEEA 89
Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           SG +   +L+ +L   G+  + +EVD+++REA +       Y +F +I
Sbjct: 90  SGFIHEDHLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFNYVEFTRI 137

>pdb|3DTP|E Chain E, Tarantula Heavy Meromyosin Obtained By Flexible Docking To Tarantula Muscle Thick Filament Cryo-Em 3d-Map Length = 196

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 67/184 (36%), Gaps = 43/184 (23%)
Query: 253 RSGYKVFTFKTPYL--EFRECFFLFA--RNGTIKTLDELSVIMRSLGMSPTIAELKKYLA 308
           RSG  VF   T +   EF+E F L    ++G I   D +     SLG   T  EL   +A
Sbjct: 42  RSGSNVFAMFTQHQVQEFKEAFQLIDQDKDGFISKND-IRATFDSLGRLCTEQELDSMVA 100
Query: 309 EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAED 368
           E  G ++F  FL +        D                                   ED
Sbjct: 101 EAPGPINFTMFLTIFGDRIAGTD----------------------------------EED 126
Query: 369 IPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYED 428
           +   +V+AF   D    G    + LK  L  WGE  S  EVDQ   EA +  N  +  + 
Sbjct: 127 V---IVNAFNLFDEG-DGKCKEETLKRSLTTWGEKFSQDEVDQALSEAPIDGNGLIDIKK 182
Query: 429 FVKI 432
           F +I
Sbjct: 183 FAQI 186

>pdb|1F54|A Chain A, Solution Structure Of The Apo N-Terminal Domain Of Yeast Calmodulin Length = 77

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 7/68 (10%)
Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFL 320
           EF+E F LF +  NG+I +  EL+ +MRSLG+SP+ AE+   + E       ++ F +FL
Sbjct: 11  EFKEAFALFDKDNNGSISS-SELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQIEFSEFL 69
Query: 321 KVMHTHSK 328
            +M    K
Sbjct: 70  ALMSRQLK 77

>pdb|2B1U|A Chain A, Solution Structure Of Calmodulin-Like Skin Protein C Terminal Domain Length = 71

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 32/57 (56%)
Query: 376 AFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           AF+A D    G +    L+  +   G+ L  +E+D + REA+V  + +V YE+F ++
Sbjct: 11  AFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNYEEFARM 67

>pdb|3I5G|B Chain B, Crystal Structure Of Rigor-Like Squid Myosin S1 Length = 153

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 349 GKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKE 408
           G+L+F  FL +        D    + +AF   D    G +P  YLK +L N G+  S +E
Sbjct: 63  GQLNFTAFLTLFGEKVSGTDPEDALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEE 122
Query: 409 VDQIFREANVTMNSKVRYEDFVKI 432
           +  ++++A +  N +  Y   V I
Sbjct: 123 IKNVWKDAPLK-NKQFNYNKMVDI 145

>pdb|1M46|A Chain A, Crystal Structure Of Mlc1p Bound To Iq4 Of Myo2p, A Class V Myosin Length = 148

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 362 THSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMN 421
           T +K ED  K    AF+  D   +G V    L+++L   GE L+  EVD++ +   V  N
Sbjct: 78  TKAKTEDFVK----AFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSN 133
Query: 422 SKVRYEDFVK 431
            ++ Y+ F++
Sbjct: 134 GEIDYKKFIE 143

>pdb|2AMI|A Chain A, Solution Structure Of The Calcium-Loaded N-Terminal Sensor Domain Of Centrin Length = 96

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Query: 267 EFRECFFLFARNGTIKTLD--ELSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFL 320
           E RE F LF  +G+  T+D  EL V MR+LG  P   E+KK ++E      G + F +FL
Sbjct: 31  EIREAFDLFDTDGS-GTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTIDFEEFL 89
Query: 321 KVM 323
            +M
Sbjct: 90  TMM 92

>pdb|3I5G|C Chain C, Crystal Structure Of Rigor-Like Squid Myosin S1 Length = 159

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 79/185 (42%), Gaps = 40/185 (21%)
Query: 262 KTPYLEFRECFFLF----ARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFP 317
           K    E RE F LF     R+G +    ++  ++R LGM+PT A++ ++   K       
Sbjct: 5   KDEIEEVREVFDLFDFWDGRDGDVDAA-KVGDLLRCLGMNPTEAQVHQHGGTK------- 56
Query: 318 DFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAF 377
              K+     K E+I                  L   + +    T + A+    E ++AF
Sbjct: 57  ---KMGEKAYKLEEI------------------LPIYEEMSSKDTGTAAD----EFMEAF 91
Query: 378 KAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANV--TMNSKVRYEDFV-KIAC 434
           K  D    G + +  +++VL   GE ++  + + IF   ++   ++  ++YED + K+  
Sbjct: 92  KTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFTFCDIREDIDGNIKYEDLMKKVMA 151
Query: 435 APVPD 439
            P PD
Sbjct: 152 GPFPD 156

>pdb|1OQP|A Chain A, Structure Of The Ca2+C-Terminal Domain Of Caltractin In Complex With The Cdc31p-Binding Domain From Kar1p Length = 77

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 40/69 (57%)
Query: 364 SKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSK 423
           S   D  +E++ AF+  D   SGT+  K L+ V    GE L+ +E+ ++  EA+   +++
Sbjct: 2   SGERDSREEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNE 61
Query: 424 VRYEDFVKI 432
           +  ++F++I
Sbjct: 62  IDEDEFIRI 70

>pdb|2FCE|A Chain A, Solution Structure Of C-Lobe Myosin Light Chain From Saccharomices Cerevisiae Length = 70

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 364 SKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSK 423
           +K ED     V AF+  D   +G V    L+++L   GE L+  EVD++ +   V  N +
Sbjct: 2   AKTEDF----VKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGE 57
Query: 424 VRYEDFVK 431
           + Y+ F++
Sbjct: 58  IDYKKFIE 65

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	441
2qac_A	146	Myosin A tail domain interacting protein MTIP; mal	1e-38
2qac_A	146	Myosin A tail domain interacting protein MTIP; mal	3e-05
1ggw_A	140	Protein (CDC4P); light chain, cytokinesis, cell cy	5e-36
2ovk_C	159	Myosin catalytic light chain LC-1, mantle muscle,	2e-34
1exr_A	148	Calmodulin; high resolution, disorder, metal trans	3e-33
1exr_A	148	Calmodulin; high resolution, disorder, metal trans	9e-04
2bl0_C	142	Myosin regulatory light chain; muscle protein, sli	8e-33
2bl0_C	142	Myosin regulatory light chain; muscle protein, sli	9e-05
3j04_B	143	Myosin regulatory light chain 2, smooth muscle MA	1e-32
4ds7_A	147	Calmodulin, CAM; protein binding, metal binding, s	7e-32
4ds7_A	147	Calmodulin, CAM; protein binding, metal binding, s	6e-06
4ds7_A	147	Calmodulin, CAM; protein binding, metal binding, s	4e-04
2mys_C	149	Myosin; muscle protein, motor protein; HET: MLY; 2	9e-32
2f2o_A	179	Calmodulin fused with calmodulin-binding domain of	2e-31
2f2o_A	179	Calmodulin fused with calmodulin-binding domain of	4e-06
2f2o_A	179	Calmodulin fused with calmodulin-binding domain of	4e-04
1m45_A	148	MLC1P, myosin light chain; protein-peptide complex	3e-31
1m45_A	148	MLC1P, myosin light chain; protein-peptide complex	5e-04
2bl0_B	145	Myosin regulatory light chain; muscle protein, sli	5e-31
2ovk_B	153	RLC, myosin regulatory light chain LC-2, mantle mu	6e-31
1w7j_B	151	Myosin light chain 1; motor protein, unconventiona	6e-31
1wdc_C	156	Scallop myosin; calcium binding protein, muscle pr	2e-30
1wdc_C	156	Scallop myosin; calcium binding protein, muscle pr	7e-06
3dtp_E	196	RLC, myosin regulatory light chain; muscle protein	2e-30
3dtp_E	196	RLC, myosin regulatory light chain; muscle protein	8e-05
2obh_A	143	Centrin-2; DNA repair complex EF hand superfamily	3e-30
2obh_A	143	Centrin-2; DNA repair complex EF hand superfamily	3e-04
2obh_A	143	Centrin-2; DNA repair complex EF hand superfamily	4e-04
2mys_B	166	Myosin; muscle protein, motor protein; HET: MLY; 2	4e-30
2mys_B	166	Myosin; muscle protein, motor protein; HET: MLY; 2	1e-05
1wdc_B	156	Scallop myosin; calcium binding protein, muscle pr	7e-30
1wdc_B	156	Scallop myosin; calcium binding protein, muscle pr	5e-07
3fwb_A	161	Cell division control protein 31; gene gating, com	1e-28
3fwb_A	161	Cell division control protein 31; gene gating, com	1e-04
3fwb_A	161	Cell division control protein 31; gene gating, com	9e-04
3qrx_A	169	Centrin; calcium-binding, EF-hand, cell division,	4e-28
3qrx_A	169	Centrin; calcium-binding, EF-hand, cell division,	3e-04
3qrx_A	169	Centrin; calcium-binding, EF-hand, cell division,	5e-04
3sg6_A	450	Gcamp2, myosin light chain kinase, green fluoresce	6e-28
3sg6_A	450	Gcamp2, myosin light chain kinase, green fluoresce	2e-09
1top_A	162	Troponin C; contractIle system protein; 1.78A {Gal	3e-27
1top_A	162	Troponin C; contractIle system protein; 1.78A {Gal	3e-04
1dtl_A	161	Cardiac troponin C; helix-turn-helix, structural p	6e-27
1dtl_A	161	Cardiac troponin C; helix-turn-helix, structural p	4e-04
2jnf_A	158	Troponin C; stretch activated muscle contraction,	4e-26
2jnf_A	158	Troponin C; stretch activated muscle contraction,	1e-04
3ox6_A	153	Calcium-binding protein 1; EF-hand, calcium-sensor	5e-26
3ox6_A	153	Calcium-binding protein 1; EF-hand, calcium-sensor	4e-04
1y1x_A	191	Leishmania major homolog of programmed cell death	2e-21
1y1x_A	191	Leishmania major homolog of programmed cell death	2e-08
1y1x_A	191	Leishmania major homolog of programmed cell death	2e-07
1qv0_A	195	Obelin, OBL; photoprotein, bioluminescence, atomic	2e-21
1s6i_A	188	CDPK, calcium-dependent protein kinase SK5; EF-han	2e-21
1s6i_A	188	CDPK, calcium-dependent protein kinase SK5; EF-han	1e-04
2f33_A	263	Calbindin; EF-hand, Ca2+-binding, metal binding pr	3e-21
2f33_A	263	Calbindin; EF-hand, Ca2+-binding, metal binding pr	8e-13
1ij5_A	323	Plasmodial specific LAV1-2 protein; fourty kDa cal	3e-21
1ij5_A	323	Plasmodial specific LAV1-2 protein; fourty kDa cal	8e-08
1uhk_A	191	Aequorin 2, aequorin; EF-hand motif, complex, lumi	1e-20
2aao_A	166	CDPK, calcium-dependent protein kinase, isoform AK	2e-20
2aao_A	166	CDPK, calcium-dependent protein kinase, isoform AK	8e-06
3pm8_A	197	PFCDPK2, calcium-dependent protein kinase 2; malar	2e-19
3pm8_A	197	PFCDPK2, calcium-dependent protein kinase 2; malar	6e-07
2znd_A	172	Programmed cell death protein 6; penta-EF-hand pro	7e-18
2znd_A	172	Programmed cell death protein 6; penta-EF-hand pro	7e-07
3ll8_B	155	Calcineurin subunit B type 1; protein-peptide dock	2e-17
1jfj_A	134	Ehcabp, calcium-binding protein; EF-hand, helix-lo	2e-17
3e3r_A	204	Calcyphosin, calcyphosine; human calcyphosine, EF-	2e-17
3e3r_A	204	Calcyphosin, calcyphosine; human calcyphosine, EF-	2e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-07
3k21_A	191	PFCDPK3, calcium-dependent protein kinase 3; calci	1e-16
3akb_A	166	Putative calcium binding protein; EF-hand, metal b	1e-16
2ktg_A	85	Calmodulin, putative; ehcam, Ca-binding protein, p	1e-16
2ktg_A	85	Calmodulin, putative; ehcam, Ca-binding protein, p	3e-06
2hpk_A	208	Photoprotein berovin; structural genomics, PSI, pr	1e-16
2hps_A	186	Coelenterazine-binding protein with bound coelent;	2e-16
2hps_A	186	Coelenterazine-binding protein with bound coelent;	2e-04
3mse_B	180	Calcium-dependent protein kinase, putative; CDPKS,	4e-16
3h4s_E	135	KCBP interacting Ca2+-binding protein; kinesin, mo	4e-16
2be4_A	272	Hypothetical protein LOC449832; DR.36843, BC083168	1e-15
2be4_A	272	Hypothetical protein LOC449832; DR.36843, BC083168	4e-09
3khe_A	191	Calmodulin-like domain protein kinase isoform 3; c	3e-15
1pva_A	110	Parvalbumin; calcium binding; 1.65A {Esox lucius}	4e-15
1nya_A	176	Calerythrin; EF-hand, metal binding protein; NMR {	5e-15
1avs_A	90	Troponin C; muscle contraction, calcium-activated,	8e-15
1avs_A	90	Troponin C; muscle contraction, calcium-activated,	9e-07
2kz2_A	94	Calmodulin, CAM; TR2C, metal binding protein; NMR	1e-14
2kz2_A	94	Calmodulin, CAM; TR2C, metal binding protein; NMR	8e-08
2joj_A	77	Centrin protein; N-terminal domain, centrin soluti	1e-14
2joj_A	77	Centrin protein; N-terminal domain, centrin soluti	3e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-05
1juo_A	198	Sorcin; calcium-binding proteins, penta-EF-hand, P	9e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-04
2d58_A	107	Allograft inflammatory factor 1; EF-hand, metal bi	1e-13
2d58_A	107	Allograft inflammatory factor 1; EF-hand, metal bi	3e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-04
1k94_A	165	Grancalcin; penta-EF-hand protein, calcium binding	2e-13
1k94_A	165	Grancalcin; penta-EF-hand protein, calcium binding	4e-05
2ccm_A	191	Calexcitin; EF hand, calcium, signaling protein; 1	2e-13
1rwy_A	109	Parvalbumin alpha; EF-hand, calcium-binding, calci	4e-13
2jjz_A	150	Ionized calcium-binding adapter molecule 2; EF-han	5e-13
2jjz_A	150	Ionized calcium-binding adapter molecule 2; EF-han	6e-06
2pvb_A	108	Protein (parvalbumin); calcium binding protein, me	1e-12
2pvb_A	108	Protein (parvalbumin); calcium binding protein, me	3e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-04
1q80_A	174	SCP, sarcoplasmic calcium-binding protein; all-alp	2e-12
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-12
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-11
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-09
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-08
1rro_A	108	RAT oncomodulin; calcium-binding protein; 1.30A {R	3e-12
1rro_A	108	RAT oncomodulin; calcium-binding protein; 1.30A {R	6e-06
1rro_A	108	RAT oncomodulin; calcium-binding protein; 1.30A {R	2e-04
2sas_A	185	Sarcoplasmic calcium-binding protein; 2.40A {Branc	3e-12
1gjy_A	167	Sorcin, CP-22, V19; calcium binding, calcium-bindi	4e-12
1gjy_A	167	Sorcin, CP-22, V19; calcium binding, calcium-bindi	4e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-08
5pal_A	109	Parvalbumin; calcium-binding protein; 1.54A {Triak	5e-12
1bu3_A	109	Calcium-binding protein; 1.65A {Merluccius bilinea	7e-12
1bu3_A	109	Calcium-binding protein; 1.65A {Merluccius bilinea	7e-08
2bec_A	202	Calcineurin B homologous protein 2; calcineurin-ho	8e-12
3fs7_A	109	Parvalbumin, thymic; calcium-binding protein, EF-h	8e-12
3fs7_A	109	Parvalbumin, thymic; calcium-binding protein, EF-h	9e-07
1wy9_A	147	Allograft inflammatory factor 1; EF-hand, calucium	9e-12
1wy9_A	147	Allograft inflammatory factor 1; EF-hand, calucium	2e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-05
3cs1_A	219	Flagellar calcium-binding protein; myristoylated,	1e-11
1alv_A	173	Calpain, S-camld; calcium binding, calmodulin like	1e-11
1alv_A	173	Calpain, S-camld; calcium binding, calmodulin like	5e-05
2kyc_A	108	Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand p	2e-11
2kyc_A	108	Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand p	5e-06
2kyc_A	108	Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand p	2e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-09
3sjs_A	220	URE3-BP sequence specific DNA binding protein; EF-	8e-11
3sjs_A	220	URE3-BP sequence specific DNA binding protein; EF-	6e-06
1wlz_A	105	DJBP, CAP-binding protein complex interacting prot	8e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
2ct9_A	208	Calcium-binding protein P22; EF-hand, metal bindin	2e-10
2ct9_A	208	Calcium-binding protein P22; EF-hand, metal bindin	8e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-04
1s6j_A	87	CDPK, calcium-dependent protein kinase SK5; EF-han	2e-10
1s6j_A	87	CDPK, calcium-dependent protein kinase SK5; EF-han	3e-10
2kn2_A	92	Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco	3e-10
2kn2_A	92	Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco	2e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-04
2opo_A	86	Polcalcin CHE A 3; calcium-binding protein, dimer,	4e-10
2opo_A	86	Polcalcin CHE A 3; calcium-binding protein, dimer,	5e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-05
2ggz_A	211	Guanylyl cyclase-activating protein 3; EF hand, gu	6e-10
2b1u_A	71	Calmodulin-like protein 5; CLSP, calmodulin-like S	7e-10
2b1u_A	71	Calmodulin-like protein 5; CLSP, calmodulin-like S	8e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-04
1tiz_A	67	Calmodulin-related protein, putative; helix-turn-h	1e-09
1tiz_A	67	Calmodulin-related protein, putative; helix-turn-h	4e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	8e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-05
2r2i_A	198	Guanylyl cyclase-activating protein 1; EF hand, GC	2e-09
2r2i_A	198	Guanylyl cyclase-activating protein 1; EF hand, GC	9e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	3e-09
1jba_A	204	GCAP-2, protein (guanylate cyclase activating prot	4e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-09
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	8e-09
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	4e-05
1bjf_A	193	Neurocalcin delta; calcium-binding, myristoylation	9e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-09
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-08
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-08
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-05
1k9u_A	78	Polcalcin PHL P 7; pollen allergen, calcium-bindin	2e-08
1k9u_A	78	Polcalcin PHL P 7; pollen allergen, calcium-bindin	2e-05
2l4h_A	214	Calcium and integrin-binding protein 1; metal bind	2e-08
2l4h_A	214	Calcium and integrin-binding protein 1; metal bind	1e-06
2l4h_A	214	Calcium and integrin-binding protein 1; metal bind	2e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-07
2ehb_A	207	Calcineurin B-like protein 4; protein complex, Ca(	6e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	8e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	9e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	9e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-04
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	1e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-06
1dgu_A	183	Calcium-saturated CIB; helical, EF-hands, blood cl	2e-07
1dgu_A	183	Calcium-saturated CIB; helical, EF-hands, blood cl	6e-06
1dgu_A	183	Calcium-saturated CIB; helical, EF-hands, blood cl	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-07
2zfd_A	226	Calcineurin B-like protein 2; calcium binding prot	4e-07
1c7v_A	81	CAVP, calcium vector protein; EF-hand family, calc	5e-07
1c7v_A	81	CAVP, calcium vector protein; EF-hand family, calc	2e-04
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	7e-07
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	9e-07
1yx7_A	83	Calsensin, LAN3-6 antigen; calcium-binding protein	2e-06
1yx7_A	83	Calsensin, LAN3-6 antigen; calcium-binding protein	1e-05
1fpw_A	190	Yeast frequenin, calcium-binding protein NCS-1; EF	2e-06
2l2e_A	190	Calcium-binding protein NCS-1; NCS1P, myristoylate	3e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-05
1g8i_A	190	Frequenin, neuronal calcium sensor 1; calcium bind	9e-06
2d8n_A	207	Recoverin; structural genomics, NPPSFA, national p	9e-06
3li6_A	66	Calcium-binding protein; calcium signaling protein	1e-05
3li6_A	66	Calcium-binding protein; calcium signaling protein	1e-05
1qx2_A	76	Vitamin D-dependent calcium-binding protein, INTE;	3e-05
1qx2_A	76	Vitamin D-dependent calcium-binding protein, INTE;	8e-05
2pmy_A	91	RAS and EF-hand domain-containing protein; rasef,	5e-05
2pmy_A	91	RAS and EF-hand domain-containing protein; rasef,	6e-05
2pmy_A	91	RAS and EF-hand domain-containing protein; rasef,	1e-04
3dd4_A	229	KV channel-interacting protein 4; EF-hands protein	8e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-04
1s6c_A	183	KV4 potassium channel-interacting protein kchip1B;	3e-04
2jul_A	256	Calsenilin; EF-hand, calcium, LXXLL, DNA binding p	5e-04

>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A Length = 146

 Score =  135 bits (343), Expect = 1e-38
 Identities = 27/168 (16%), Positives = 57/168 (33%), Gaps = 42/168 (25%)

Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           E     +   ++  G I ++D  S   R LG++P+  + KK     G  L++  +L+ + 
Sbjct: 16  ESDVRIYFNEKSSGGKI-SIDNASYNARKLGLAPSSIDEKKIKELYGDNLTYEQYLEYLS 74

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                +D  +E++  F   D                                        
Sbjct: 75  ICVHDKDNVEELIKMFAHFD--------------------------NN-----------C 97

Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           +G +    +K++L  WG+ L+ +E        +      + Y+ F + 
Sbjct: 98  TGYLTKSQMKNILTTWGDALTDQEAIDALNAFSS--EDNIDYKLFCED 143

>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A Length = 146

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 5/61 (8%)

Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAE--KGGKLSFPDFLKV 322
           E  + F  F     G + T  ++  I+ + G + T  E    L        + +  F + 
Sbjct: 85  ELIKMFAHFDNNCTGYL-TKSQMKNILTTWGDALTDQEAIDALNAFSSEDNIDYKLFCED 143

Query: 323 M 323
           +
Sbjct: 144 I 144

>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR {Schizosaccharomyces pombe} SCOP: a.39.1.5 Length = 140

 Score =  128 bits (325), Expect = 5e-36
 Identities = 37/171 (21%), Positives = 73/171 (42%), Gaps = 39/171 (22%)

Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
            +++ F LF R+  G I     +  ++R+ G +PT+AE+ +  +    ++    FL+V++
Sbjct: 6   PYKQAFSLFDRHGTGRI-PKTSIGDLLRACGQNPTLAEITEIESTLPAEVDMEQFLQVLN 64

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
             +  +                                       P+E V  F+  D   
Sbjct: 65  RPNGFDM-----------------------------------PGDPEEFVKGFQVFDKDA 89

Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           +G +    L++VL + GE LS++E+D++ +   V  +  V Y DFV++  A
Sbjct: 90  TGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPVK-DGMVNYHDFVQMILA 139

>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ... Length = 148

 Score =  121 bits (306), Expect = 3e-33
 Identities = 56/168 (33%), Positives = 86/168 (51%), Gaps = 36/168 (21%)

Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++  GTI T  EL  +MRSLG +PT AEL+  + E               
Sbjct: 11  EFKEAFALFDKDGDGTI-TTKELGTVMRSLGQNPTEAELQDMINE--------------- 54

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                              D   +G + FP+FL +M    K +D  +E+++AFK  D   
Sbjct: 55  ------------------VDADGNGTIDFPEFLSLMARKMKEQDSEEELIEAFKVFDRDG 96

Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           +G + A  L+HV+ N GE L+  EVD++ REA++  +  + YE+FV++
Sbjct: 97  NGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYEEFVRM 144

>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ... Length = 148

 Score = 38.6 bits (91), Expect = 9e-04
 Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 36/96 (37%)

Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           E  E F +F R  NG I +  EL  +M +LG   T  E+ + + E               
Sbjct: 84  ELIEAFKVFDRDGNGLI-SAAELRHVMTNLGEKLTDDEVDEMIRE--------------- 127

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVM 360
                             AD    G +++ +F+++M
Sbjct: 128 ------------------ADIDGDGHINYEEFVRMM 145

>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum} Length = 142

 Score =  119 bits (302), Expect = 8e-33
 Identities = 38/169 (22%), Positives = 62/169 (36%), Gaps = 39/169 (23%)

Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF     G I T + L  +++  G+    A   +   E               
Sbjct: 7   EFKEAFELFDSERTGFI-TKEGLQTVLKQFGVRVEPAAFNEMFNE--------------- 50

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                             AD T +GK+ FP+FL +M    K       +  AF+  D   
Sbjct: 51  ------------------ADATGNGKIQFPEFLSMMGRRMKQTTSEDILRQAFRTFDPEG 92

Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNS-KVRYEDFVKI 432
           +G +P   L+  L+N G+ L   E  +            ++RY++F+  
Sbjct: 93  TGYIPKAALQDALLNLGDRLKPHEFAEFLGITET--EKGQIRYDNFINT 139

>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum} Length = 142

 Score = 41.3 bits (98), Expect = 9e-05
 Identities = 17/68 (25%), Positives = 38/68 (55%)

Query: 366 AEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVR 425
            +D   E  +AF+  D+ ++G +  + L+ VL  +G  +     +++F EA+ T N K++
Sbjct: 1   GDDQVSEFKEAFELFDSERTGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGKIQ 60

Query: 426 YEDFVKIA 433
           + +F+ + 
Sbjct: 61  FPEFLSMM 68

>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus} Length = 143

 Score =  119 bits (301), Expect = 1e-32
 Identities = 36/168 (21%), Positives = 66/168 (39%), Gaps = 40/168 (23%)

Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F +  +N  G I   ++L  ++ S+G +PT   L+  ++E  G ++F  FL +  
Sbjct: 8   EFKEAFNMIDQNRDGFI-DKEDLHDMLASMGKNPTDEYLEGMMSEAPGPINFTMFLTMFG 66

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                 D    + +AF   D   SG +                                 
Sbjct: 67  EKLNGTDPEDVIRNAFACFDEEASGFIH-------------------------------- 94

Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
                  +L+ +L   G+  + +EVD+++REA +       Y +F +I
Sbjct: 95  -----EDHLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFNYVEFTRI 137

>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A Length = 147

 Score =  117 bits (296), Expect = 7e-32
 Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 37/168 (22%)

Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++  G+I +  EL+ +MRSLG+SP+ AE+   + E               
Sbjct: 12  EFKEAFALFDKDNSGSI-SASELATVMRSLGLSPSEAEVADLMNE--------------- 55

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                              D   +  + F +FL +M    K  D  +E+++AFK  D   
Sbjct: 56  ------------------IDVDGNHAIEFSEFLALMSRQLKCNDSEQELLEAFKVFDKNG 97

Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
            G + A  LKHVL + GE L+  EVD++ RE +   + ++  + F  +
Sbjct: 98  DGLISAAELKHVLTSIGEKLTDAEVDEMLREVSDG-SGEINIKQFAAL 144

>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A Length = 147

 Score = 45.1 bits (108), Expect = 6e-06
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 6/62 (9%)

Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAE---KGGKLSFPDFLK 321
           E  E F +F +  +G I +  EL  ++ S+G   T AE+ + L E     G+++   F  
Sbjct: 85  ELLEAFKVFDKNGDGLI-SAAELKHVLTSIGEKLTDAEVDEMLREVSDGSGEINIKQFAA 143

Query: 322 VM 323
           ++
Sbjct: 144 LL 145

>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A Length = 147

 Score = 39.8 bits (94), Expect = 4e-04
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 4/72 (5%)

Query: 366 AEDIPKEVVDAFKAA----DTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMN 421
           ++++ +E +  FK A    D   SG++ A  L  V+ + G   S  EV  +  E +V  N
Sbjct: 2   SQNLTEEQIAEFKEAFALFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDGN 61

Query: 422 SKVRYEDFVKIA 433
             + + +F+ + 
Sbjct: 62  HAIEFSEFLALM 73

>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C* Length = 149

 Score =  117 bits (296), Expect = 9e-32
 Identities = 41/170 (24%), Positives = 71/170 (41%), Gaps = 37/170 (21%)

Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           +F+E F LF R     I T  ++  I R+LG +PT AE+ K L                 
Sbjct: 9   DFKEAFLLFDRTGDAKI-TASQVGDIARALGQNPTNAEINKILGN--------------- 52

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAED--IPKEVVDAFKAADT 382
                              +   +  ++F +FL ++   +  +D    ++ V+  +  D 
Sbjct: 53  ------------PS----KEEMNAAAITFEEFLPMLQAAANNKDQGTFEDFVEGLRVFDK 96

Query: 383 TKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
             +GTV    L+HVL   GE ++ +EV+++ +      N  + YE FVK 
Sbjct: 97  EGNGTVMGAELRHVLATLGEKMTEEEVEELMKGQ-EDSNGCINYEAFVKH 145

>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A Length = 179

 Score =  118 bits (297), Expect = 2e-31
 Identities = 56/168 (33%), Positives = 86/168 (51%), Gaps = 36/168 (21%)

Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++  GTI T  EL  +MRSLG +PT AEL+  + E               
Sbjct: 12  EFKEAFSLFDKDGDGTI-TTKELGTVMRSLGQNPTEAELQDMINE--------------- 55

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                              D   +G + FP+FL +M    K  D  +E+ +AF+  D   
Sbjct: 56  ------------------VDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 97

Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           +G + A  L+HV+ N GE L+ +EVD++ REA++  + +V YE+FV++
Sbjct: 98  NGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQM 145

>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A Length = 179

 Score = 46.0 bits (110), Expect = 4e-06
 Identities = 22/127 (17%), Positives = 42/127 (33%), Gaps = 39/127 (30%)

Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           E RE F +F +  NG I +  EL  +M +LG   T  E+ + + E               
Sbjct: 85  EIREAFRVFDKDGNGYI-SAAELRHVMTNLGEKLTDEEVDEMIRE--------------- 128

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIP---KEVVDAFKAAD 381
                             AD    G++++ +F+++M             + + +  +A  
Sbjct: 129 ------------------ADIDGDGQVNYEEFVQMMTAKGGGGGAAARKEVIRNKIRAIG 170

Query: 382 TTKSGTV 388
                  
Sbjct: 171 KMARVFS 177

>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A Length = 179

 Score = 40.2 bits (95), Expect = 4e-04
 Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 4/72 (5%)

Query: 366 AEDIPKEVVDAFKAA----DTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMN 421
           A+ + +E +  FK A    D    GT+  K L  V+ + G+  +  E+  +  E +   N
Sbjct: 2   ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGN 61

Query: 422 SKVRYEDFVKIA 433
             + + +F+ + 
Sbjct: 62  GTIDFPEFLTMM 73

>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A 2fce_A Length = 148

 Score =  116 bits (292), Expect = 3e-31
 Identities = 32/173 (18%), Positives = 64/173 (36%), Gaps = 40/173 (23%)

Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYL-----AEKGGKLSFPDF 319
             ++ F LF +   G I   D L   +R++G +PT   ++  +           L+    
Sbjct: 5   ANKDIFTLFDKKGQGAI-AKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLDQI 63

Query: 320 LKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKA 379
             ++  + K  D                                +  +   ++ V AF+ 
Sbjct: 64  TGLIEVNEKELD--------------------------------ATTKAKTEDFVKAFQV 91

Query: 380 ADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
            D   +G V    L+++L   GE L+  EVD++ +   V  N ++ Y+ F++ 
Sbjct: 92  FDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDYKKFIED 144

>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A 2fce_A Length = 148

 Score = 39.5 bits (93), Expect = 5e-04
 Identities = 13/96 (13%), Positives = 33/96 (34%), Gaps = 36/96 (37%)

Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           +F + F +F +   G + ++ +L  ++  LG   T AE+ + L                 
Sbjct: 84  DFVKAFQVFDKESTGKV-SVGDLRYMLTGLGEKLTDAEVDELLKG--------------- 127

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVM 360
                              +   +G++ +  F++ +
Sbjct: 128 ------------------VEVDSNGEIDYKKFIEDV 145

>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum} Length = 145

 Score =  115 bits (290), Expect = 5e-31
 Identities = 42/175 (24%), Positives = 75/175 (42%), Gaps = 40/175 (22%)

Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE-KGGKLSFPDFLKVM 323
           + +ECF +F ++  G + +++EL   +RSLG +PT AEL     +    +     F  V 
Sbjct: 6   QIQECFQIFDKDNDGKV-SIEELGSALRSLGKNPTNAELNTIKGQLNAKEFDLATFKTVY 64

Query: 324 HTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTT 383
               K      +                                    E++DAF+A D  
Sbjct: 65  RKPIKTPTEQSK------------------------------------EMLDAFRALDKE 88

Query: 384 KSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAPVP 438
            +GT+    L+ +L+N G+ L+S EV+++ +E +V+ +  + YE FV +     P
Sbjct: 89  GNGTIQEAELRQLLLNLGDALTSSEVEELMKEVSVSGDGAINYESFVDMLVTGYP 143

>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens} SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B* 1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C Length = 151

 Score =  115 bits (290), Expect = 6e-31
 Identities = 43/170 (25%), Positives = 71/170 (41%), Gaps = 37/170 (21%)

Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF R   G I    +   +MR+LG +PT AE+ K L                 
Sbjct: 11  EFKEAFELFDRVGDGKI-LYSQCGDVMRALGQNPTNAEVLKVLGN--------------- 54

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSK--AEDIPKEVVDAFKAADT 382
                             +D  KS ++ F  FL ++   +K   +   ++ ++ F+  D 
Sbjct: 55  ------------PK----SDELKSRRVDFETFLPMLQAVAKNRGQGTYEDYLEGFRVFDK 98

Query: 383 TKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
             +G V    L+HVL   GE ++ +EV+ +    +   N  + YE F+K 
Sbjct: 99  EGNGKVMGAELRHVLTTLGEKMTEEEVETVL-AGHEDSNGCINYEAFLKH 147

>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ... Length = 156

 Score =  114 bits (287), Expect = 2e-30
 Identities = 42/181 (23%), Positives = 68/181 (37%), Gaps = 43/181 (23%)

Query: 267 EFRECFFLF----ARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKV 322
           + ++ F LF     R+G +    +L  + R LG++P   ++   +               
Sbjct: 10  DLKDVFELFDFWDGRDGAV-DAFKLGDVCRCLGINPRNEDVFA-VGG------------- 54

Query: 323 MHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAE-DIPKEVVDAFKAAD 381
                                       L F +FL         E     + ++AFK  D
Sbjct: 55  --------------------THKMGEKSLPFEEFLPAYEGLMDCEQGTFADYMEAFKTFD 94

Query: 382 TTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNS--KVRYEDFVKIACA-PVP 438
               G +    L+HVL   GE LS ++VD+I +  ++  +    V+YEDFVK   A P P
Sbjct: 95  REGQGFISGAELRHVLTALGERLSDEDVDEIIKLTDLQEDLEGNVKYEDFVKKVMAGPYP 154

Query: 439 D 439
           D
Sbjct: 155 D 155

>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ... Length = 156

 Score = 44.8 bits (107), Expect = 7e-06
 Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 9/68 (13%)

Query: 264 PYLEFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAE------KGGKLS 315
            + ++ E F  F R   G I +  EL  ++ +LG   +  ++ + +          G + 
Sbjct: 82  TFADYMEAFKTFDREGQGFI-SGAELRHVLTALGERLSDEDVDEIIKLTDLQEDLEGNVK 140

Query: 316 FPDFLKVM 323
           + DF+K +
Sbjct: 141 YEDFVKKV 148

>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia} Length = 196

 Score =  115 bits (289), Expect = 2e-30
 Identities = 42/168 (25%), Positives = 60/168 (35%), Gaps = 41/168 (24%)

Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F L  ++  G I + +++     SLG   T  EL   +AE  G ++F  FL +  
Sbjct: 58  EFKEAFQLIDQDKDGFI-SKNDIRATFDSLGRLCTEQELDSMVAEAPGPINFTMFLTIFG 116

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                 D    +V+AF   D                      E                 
Sbjct: 117 DRIAGTDEEDVIVNAFNLFD----------------------EG---------------- 138

Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
            G    + LK  L  WGE  S  EVDQ   EA +  N  +  + F +I
Sbjct: 139 DGKCKEETLKRSLTTWGEKFSQDEVDQALSEAPIDGNGLIDIKKFAQI 186

>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia} Length = 196

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 7/70 (10%)

Query: 267 EFRECFFLFAR-NGTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFLK 321
                F LF   +G     + L   + + G   +  E+ + L+E      G +    F +
Sbjct: 127 VIVNAFNLFDEGDGKC-KEETLKRSLTTWGEKFSQDEVDQALSEAPIDGNGLIDIKKFAQ 185

Query: 322 VMHTHSKAED 331
           ++ T    E+
Sbjct: 186 IL-TKGAKEE 194

>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A Length = 143

 Score =  113 bits (285), Expect = 3e-30
 Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 36/168 (21%)

Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           E RE F LF  +  GTI  + EL V MR+LG  P   E+KK ++E               
Sbjct: 7   EIREAFDLFDADGTGTI-DVKELKVAMRALGFEPKKEEIKKMISE--------------- 50

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                              D   +GK++F DFL VM      +D  +E++ AFK  D  +
Sbjct: 51  ------------------IDKEGTGKMNFGDFLTVMTQKMSEKDTKEEILKAFKLFDDDE 92

Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           +G +  K LK V    GE L+ +E+ ++  EA+   + +V  ++F++I
Sbjct: 93  TGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQEFLRI 140

>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A Length = 143

 Score = 40.1 bits (95), Expect = 3e-04
 Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 36/96 (37%)

Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           E  + F LF     G I +   L  + + LG + T  EL++                 M 
Sbjct: 80  EILKAFKLFDDDETGKI-SFKNLKRVAKELGENLTDEELQE-----------------M- 120

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVM 360
                             AD    G++S  +FL++M
Sbjct: 121 ---------------IDEADRDGDGEVSEQEFLRIM 141

>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A Length = 143

 Score = 39.4 bits (93), Expect = 4e-04
 Identities = 15/63 (23%), Positives = 30/63 (47%)

Query: 371 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFV 430
           +E+ +AF   D   +GT+  K LK  +   G     +E+ ++  E +     K+ + DF+
Sbjct: 6   QEIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFGDFL 65

Query: 431 KIA 433
            + 
Sbjct: 66  TVM 68

>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B Length = 166

 Score =  113 bits (285), Expect = 4e-30
 Identities = 30/169 (17%), Positives = 61/169 (36%), Gaps = 41/169 (24%)

Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLG-MSPTIAELKKYLAEKGGKLSFPDFLKVM 323
           +F+E F +  +N  G I   D+L     ++G ++    EL   + E  G ++F  FL + 
Sbjct: 26  DFKEAFTVIDQNADGII-DKDDLRETFAAMGRLNVKNEELDAMIKEASGPINFTVFLTMF 84

Query: 324 HTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTT 383
               K  D P++                                     ++ AFK  D  
Sbjct: 85  GEKLKGAD-PED------------------------------------VIMGAFKVLDPD 107

Query: 384 KSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
             G++   +L+ +L   G   + +E+  ++      +   V Y++   +
Sbjct: 108 GKGSIKKSFLEELLTTGGGRFTPEEIKNMWAAFPPDVAGNVDYKNICYV 156

>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B Length = 166

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 8/71 (11%)

Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFL 320
                F +      G+I     L  ++ + G   T  E+K   A       G + + +  
Sbjct: 96  VIMGAFKVLDPDGKGSI-KKSFLEELLTTGGGRFTPEEIKNMWAAFPPDVAGNVDYKNIC 154

Query: 321 KVMHTHSKAED 331
            V+ TH +  +
Sbjct: 155 YVI-THGEDAE 164

>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ... Length = 156

 Score =  112 bits (283), Expect = 7e-30
 Identities = 35/168 (20%), Positives = 60/168 (35%), Gaps = 41/168 (24%)

Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           E +E F +   +  G + + +++  I   LG +P   EL   L E  G L+F  FL +  
Sbjct: 19  EMKEAFSMIDVDRDGFV-SKEDIKAISEQLGRAPDDKELTAMLKEAPGPLNFTMFLSIFS 77

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                 D  +E                                     + +AF   D  +
Sbjct: 78  DKLSGTD-SEE------------------------------------TIRNAFAMFDEQE 100

Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           +  +  +Y+K +L N G+  +  E+   F+EA V    K  Y  F  +
Sbjct: 101 TKKLNIEYIKDLLENMGDNFNKDEMRMTFKEAPVE-GGKFDYVKFTAM 147

>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ... Length = 156

 Score = 48.3 bits (116), Expect = 5e-07
 Identities = 12/70 (17%), Positives = 29/70 (41%), Gaps = 7/70 (10%)

Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAE---KGGKLSFPDFLK 321
             R  F +F       +  ++ +  ++ ++G +    E++    E   +GGK  +  F  
Sbjct: 88  TIRNAFAMFDEQETKKL-NIEYIKDLLENMGDNFNKDEMRMTFKEAPVEGGKFDYVKFTA 146

Query: 322 VMHTHSKAED 331
           ++   S  E+
Sbjct: 147 MI-KGSGEEE 155

>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A Length = 161

 Score =  109 bits (275), Expect = 1e-28
 Identities = 36/168 (21%), Positives = 60/168 (35%), Gaps = 36/168 (21%)

Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           E  E F LF  N  G +    EL V M++LG      E+   + E               
Sbjct: 24  EIYEAFSLFDMNNDGFL-DYHELKVAMKALGFELPKREILDLIDE--------------- 67

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                              D+     + + DF  VM       D   E+  AF+  D   
Sbjct: 68  ------------------YDSEGRHLMKYDDFYIVMGEKILKRDPLDEIKRAFQLFDDDH 109

Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           +G +  K L+ V    GE L+ +E+  +  E ++  + ++   +F+ I
Sbjct: 110 TGKISIKNLRRVAKELGETLTDEELRAMIEEFDLDGDGEINENEFIAI 157

>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A Length = 161

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 4/80 (5%)

Query: 358 KVMHTHSKAEDIPKEVVDAFKAA----DTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIF 413
             + +     ++ +E       A    D    G +    LK  +   G  L  +E+  + 
Sbjct: 6   SSLQSGPLNSELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLI 65

Query: 414 REANVTMNSKVRYEDFVKIA 433
            E +      ++Y+DF  + 
Sbjct: 66  DEYDSEGRHLMKYDDFYIVM 85

>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A Length = 161

 Score = 39.1 bits (92), Expect = 9e-04
 Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 36/96 (37%)

Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           E +  F LF     G I ++  L  + + LG + T  EL+                  M 
Sbjct: 97  EIKRAFQLFDDDHTGKI-SIKNLRRVAKELGETLTDEELRA-----------------M- 137

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVM 360
                           +  D    G+++  +F+ + 
Sbjct: 138 ---------------IEEFDLDGDGEINENEFIAIC 158

>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A Length = 169

 Score =  108 bits (271), Expect = 4e-28
 Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 36/168 (21%)

Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           E RE F LF  +  GTI    EL V MR+LG  P   E+KK ++E               
Sbjct: 29  EIREAFDLFDTDGSGTI-DAKELKVAMRALGFEPKKEEIKKMISE--------------- 72

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                              D   SG + F +FL +M       D  +E++ AF+  D   
Sbjct: 73  ------------------IDKDGSGTIDFEEFLTMMTAKMGERDSREEILKAFRLFDDDN 114

Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           SGT+  K L+ V    GE L+ +E+ ++  EA+   ++++  ++F++I
Sbjct: 115 SGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDEDEFIRI 162

>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A Length = 169

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 17/63 (26%), Positives = 33/63 (52%)

Query: 371 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFV 430
           +E+ +AF   DT  SGT+ AK LK  +   G     +E+ ++  E +   +  + +E+F+
Sbjct: 28  QEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTIDFEEFL 87

Query: 431 KIA 433
            + 
Sbjct: 88  TMM 90

>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A Length = 169

 Score = 39.5 bits (93), Expect = 5e-04
 Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 36/96 (37%)

Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           E  + F LF    +GTI T+ +L  + + LG + T  EL++ +AE               
Sbjct: 102 EILKAFRLFDDDNSGTI-TIKDLRRVAKELGENLTEEELQEMIAE--------------- 145

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVM 360
                             AD     ++   +F+++M
Sbjct: 146 ------------------ADRNDDNEIDEDEFIRIM 163

>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT calmodulin chimera; calcium sensor, fluorescent protein; HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A* 3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A* 3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A Length = 450

 Score =  114 bits (286), Expect = 6e-28
 Identities = 56/168 (33%), Positives = 86/168 (51%), Gaps = 36/168 (21%)

Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+E F LF ++  GTI T  EL  +MRSLG +PT AEL+  + E               
Sbjct: 313 EFKEAFSLFDKDGDGTI-TTKELGTVMRSLGQNPTEAELQDMINE--------------- 356

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                              D   +G + FP+FL +M    K  D  +E+ +AF+  D   
Sbjct: 357 ------------------VDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 398

Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           +G + A  L+HV+ N GE L+ +EVD++ REA++  + +V YE+FV++
Sbjct: 399 NGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQM 446

>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT calmodulin chimera; calcium sensor, fluorescent protein; HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A* 3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A* 3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A Length = 450

 Score = 58.4 bits (141), Expect = 2e-09
 Identities = 28/194 (14%), Positives = 56/194 (28%), Gaps = 51/194 (26%)

Query: 244 YCNSAEPLDRSGYKVFTFKTPYLEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAEL 303
            C S  P     +  F    P   + +               E ++  +  G   T AE+
Sbjct: 226 QCFSRYPDHMKQHDFFKSAMPE-GYIQ---------------ERTIFFKDDGNYKTRAEV 269

Query: 304 KKYLAE-----KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLK 358
           K          +   + F +   ++                                 L+
Sbjct: 270 KFEGDTLVNRIELKGIDFKEDGNILG------------------------------HKLE 299

Query: 359 VMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANV 418
                   E+   E  +AF   D    GT+  K L  V+ + G+  +  E+  +  E + 
Sbjct: 300 YNTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDA 359

Query: 419 TMNSKVRYEDFVKI 432
             N  + + +F+ +
Sbjct: 360 DGNGTIDFPEFLTM 373

>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ... Length = 162

 Score =  105 bits (265), Expect = 3e-27
 Identities = 34/171 (19%), Positives = 70/171 (40%), Gaps = 39/171 (22%)

Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+  F +F  +  G I +  EL  +MR LG +PT  EL   + E               
Sbjct: 21  EFKAAFDMFDADGGGDI-STKELGTVMRMLGQNPTKEELDAIIEE--------------- 64

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVM---HTHSKAEDIPKEVVDAFKAAD 381
                              D   SG + F +FL +M             +E+ + F+  D
Sbjct: 65  ------------------VDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFD 106

Query: 382 TTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
               G +  + L  +L   GE ++ ++++ + ++++   + ++ +++F+K+
Sbjct: 107 KNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLKM 157

>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ... Length = 162

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 36/96 (37%)

Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           E   CF +F +  +G I  ++EL  I+R+ G   T  +++  + +               
Sbjct: 97  ELANCFRIFDKNADGFI-DIEELGEILRATGEHVTEEDIEDLMKD--------------- 140

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVM 360
                             +D    G++ F +FLK+M
Sbjct: 141 ------------------SDKNNDGRIDFDEFLKMM 158

>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ... Length = 161

 Score =  104 bits (263), Expect = 6e-27
 Identities = 38/172 (22%), Positives = 75/172 (43%), Gaps = 40/172 (23%)

Query: 267 EFRECFFLF---ARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVM 323
           EF+  F +F   A +G+I +  EL  +MR LG +PT  EL++ + E              
Sbjct: 19  EFKAAFDIFVLGAEDGSI-STKELGKVMRMLGQNPTPEELQEMIDE-------------- 63

Query: 324 HTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIP---KEVVDAFKAA 380
                               D   SG + F +FL +M    K +      +E+ D F+  
Sbjct: 64  -------------------VDEDGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMF 104

Query: 381 DTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           D    G +  + LK +L   GE ++  +++++ ++ +   + ++ Y++F++ 
Sbjct: 105 DKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEF 156

>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ... Length = 161

 Score = 39.8 bits (94), Expect = 4e-04
 Identities = 15/96 (15%), Positives = 37/96 (38%), Gaps = 36/96 (37%)

Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           E  + F +F +  +G I  L+EL +++++ G + T  ++++ + +               
Sbjct: 96  ELSDLFRMFDKNADGYI-DLEELKIMLQATGETITEDDIEELMKD--------------- 139

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVM 360
                              D    G++ + +FL+ M
Sbjct: 140 ------------------GDKNNDGRIDYDEFLEFM 157

>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A Length = 158

 Score =  102 bits (257), Expect = 4e-26
 Identities = 29/173 (16%), Positives = 65/173 (37%), Gaps = 41/173 (23%)

Query: 267 EFRECFFLFAR---NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVM 323
                F  F     +G + + D++ +I+  LG+  T + +++ + E              
Sbjct: 14  LLETAFRDFETPEGSGRV-STDQIGIILEVLGIQQTKSTIRQLIDE-------------- 58

Query: 324 HTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVM----HTHSKAEDIPKEVVDAFKA 379
                               D   +G + F  F  +           E + +E+ +AF+ 
Sbjct: 59  -------------------FDPFGNGDIDFDSFKIIGARFLGEEVNPEQMQQELREAFRL 99

Query: 380 ADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
            D   +G +    ++ +L    E LSS+++D +  E +   +  V +E+F+ +
Sbjct: 100 YDKEGNGYISTDVMREILAELDETLSSEDLDAMIDEIDADGSGTVDFEEFMGV 152

>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A Length = 158

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 36/96 (37%)

Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           E RE F L+ +  NG I + D +  I+  L  + +  +L   + E               
Sbjct: 92  ELREAFRLYDKEGNGYI-STDVMREILAELDETLSSEDLDAMIDE--------------- 135

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVM 360
                              D   SG + F +F+ VM
Sbjct: 136 ------------------IDADGSGTVDFEEFMGVM 153

>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A Length = 153

 Score =  102 bits (256), Expect = 5e-26
 Identities = 38/173 (21%), Positives = 70/173 (40%), Gaps = 41/173 (23%)

Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           E RE F  F ++  G I    +L   MR++G  PT  EL +   +               
Sbjct: 12  ELREAFREFDKDKDGYI-NCRDLGNCMRTMGYMPTEMELIELSQQ--------------- 55

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAED----IPKEVVDAFKAA 380
                              +    G + F DF+++M     AE       KE+ DAF+  
Sbjct: 56  ------------------INMNLGGHVDFDDFVELMGPKLLAETADMIGVKELRDAFREF 97

Query: 381 DTTKSGTVPAKYLKHVLVNW-GEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           DT   G +    L+  +    G  +  +++++I R+ ++  + +V +E+FV++
Sbjct: 98  DTNGDGEISTSELREAMRALLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFVRM 150

>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A Length = 153

 Score = 39.8 bits (94), Expect = 4e-04
 Identities = 14/63 (22%), Positives = 34/63 (53%)

Query: 371 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFV 430
           +E+ +AF+  D  K G +  + L + +   G   +  E+ ++ ++ N+ +   V ++DFV
Sbjct: 11  EELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDFV 70

Query: 431 KIA 433
           ++ 
Sbjct: 71  ELM 73

>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8 Length = 191

 Score = 90.4 bits (225), Expect = 2e-21
 Identities = 27/168 (16%), Positives = 63/168 (37%), Gaps = 43/168 (25%)

Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           E  E F     +  G I ++ EL+  + S G+  ++A  +K L                 
Sbjct: 28  ELMEWFRAVDTDGSGAI-SVPELNAALSSAGVPFSLATTEKLLHM--------------- 71

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                              D   SG+++F +F  + H           + + F+  D++ 
Sbjct: 72  ------------------YDKNHSGEITFDEFKDLHHFI-------LSMREGFRKRDSSG 106

Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
            G + +  ++  L++ G  +S +    + R+ +      + ++D+V++
Sbjct: 107 DGRLDSNEVRAALLSSGYQVSEQTFQALMRKFDRQRRGSLGFDDYVEL 154

>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8 Length = 191

 Score = 53.1 bits (128), Expect = 2e-08
 Identities = 18/102 (17%), Positives = 38/102 (37%), Gaps = 16/102 (15%)

Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAEL----KKYLAEKGGKLSFPDFL 320
             RE F       +G +   +E+   + S G   +        +K+  ++ G L F D++
Sbjct: 94  SMREGFRKRDSSGDGRL-DSNEVRAALLSSGYQVSEQTFQALMRKFDRQRRGSLGFDDYV 152

Query: 321 KVMHTHSKAEDIPKEVVDAFKAADTTKSGK--LSFPDFLKVM 360
           ++             V + F   D  ++G+   +F  F+   
Sbjct: 153 ELSIFV-------CRVRNVFAFYDRERTGQVTFTFDTFIGGS 187

>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8 Length = 191

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 14/81 (17%), Positives = 35/81 (43%)

Query: 352 SFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQ 411
             P    V    ++  +  +E+++ F+A DT  SG +    L   L + G   S    ++
Sbjct: 8   HMPTSTGVYAPSARHMNDNQELMEWFRAVDTDGSGAISVPELNAALSSAGVPFSLATTEK 67

Query: 412 IFREANVTMNSKVRYEDFVKI 432
           +    +   + ++ +++F  +
Sbjct: 68  LLHMYDKNHSGEITFDEFKDL 88

>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A* Length = 195

 Score = 90.6 bits (225), Expect = 2e-21
 Identities = 29/183 (15%), Positives = 51/183 (27%), Gaps = 46/183 (25%)

Query: 267 EFRECFFLFARN--GTIKTLDEL-----SVIMRSLGMSPTIAELKKYLAEKGGKLSFPDF 319
             +  F     N  G I TLDE+       I   L  +P   +  +   E          
Sbjct: 21  RHKHMFDFLDINGNGKI-TLDEIVSKASDDICAKLEATPEQTKRHQVCVE---------- 69

Query: 320 LKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAE----------DI 369
                               F+        +++FP FL      + +E           I
Sbjct: 70  -----------------AF-FRGCGMEYGKEIAFPQFLDGWKQLATSELKKWARNEPTLI 111

Query: 370 PKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDF 429
            +     F   D   SGT+     K      G   S ++ +  FR  ++     +  ++ 
Sbjct: 112 REWGDAVFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFRHCDLDNAGDLDVDEM 171

Query: 430 VKI 432
            + 
Sbjct: 172 TRQ 174

>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5 Length = 188

 Score = 90.0 bits (224), Expect = 2e-21
 Identities = 31/168 (18%), Positives = 60/168 (35%), Gaps = 39/168 (23%)

Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
             +E F +   +  GTI T DEL   ++ +G     +E+K  +                 
Sbjct: 11  GLKELFKMIDTDNSGTI-TFDELKDGLKRVGSELMESEIKDLMDA--------------- 54

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                             AD  KSG + + +F+     H    +  + +V AF   D   
Sbjct: 55  ------------------ADIDKSGTIDYGEFIAAT-VHLNKLEREENLVSAFSYFDKDG 95

Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           SG +    ++    +   GL    +D + +E +   + ++ Y +F  +
Sbjct: 96  SGYITLDEIQQACKD--FGLDDIHIDDMIKEIDQDNDGQIDYGEFAAM 141

>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5 Length = 188

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 4/69 (5%)

Query: 366 AEDIPKEVVDAFKAA----DTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMN 421
           AE + +E +   K      DT  SGT+    LK  L   G  L   E+  +   A++  +
Sbjct: 1   AERLSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKS 60

Query: 422 SKVRYEDFV 430
             + Y +F+
Sbjct: 61  GTIDYGEFI 69

>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR {Rattus norvegicus} PDB: 2g9b_A Length = 263

 Score = 91.9 bits (228), Expect = 3e-21
 Identities = 25/184 (13%), Positives = 58/184 (31%), Gaps = 46/184 (25%)

Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           +F E +  F  +  G +    EL  +++ L  +   A L                     
Sbjct: 17  QFFEIWLHFDADGSGYL-EGKELQNLIQELLQARKKAGL--------------------- 54

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHT--------HSKAEDIPKEVVDA 376
                 ++  E+            GK+   +   V+ T          +     +E +  
Sbjct: 55  ------ELSPEMKTFVDQYGQRDDGKIGIVELAHVLPTEENFLLLFRCQQLKSCEEFMKT 108

Query: 377 FKAADTTKSGTVPAKYLKHVLVNWGEGLSS--------KEVDQIFREANVTMNSKVRYED 428
           ++  DT  SG +  + LK+ L +  E  +         +  D + +  +   + K+   +
Sbjct: 109 WRKYDTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKLELTE 168

Query: 429 FVKI 432
             ++
Sbjct: 169 MARL 172

>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR {Rattus norvegicus} PDB: 2g9b_A Length = 263

 Score = 67.2 bits (164), Expect = 8e-13
 Identities = 28/183 (15%), Positives = 50/183 (27%), Gaps = 40/183 (21%)

Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF + +  +    +G I   +EL   ++ L            LAE               
Sbjct: 104 EFMKTWRKYDTDHSGFI-ETEELKNFLKDLLEKANKTVDDTKLAE--------------- 147

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHT-------HSKAEDIPKEVVDAF 377
                           K  D+   GKL   +  +++             +   KE   AF
Sbjct: 148 ----------YTDLMLKLFDSNNDGKLELTEMARLLPVQENFLLKFQGIKMCGKEFNKAF 197

Query: 378 KAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNS-----KVRYEDFVKI 432
           +  D   +G +    L  +L +  E    +            + +     K+   D   I
Sbjct: 198 ELYDQDGNGYIDENELDALLKDLCEKNKQELDINNISTYKKNIMALSDGGKLYRTDLALI 257

Query: 433 ACA 435
             A
Sbjct: 258 LSA 260

>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding protein, CBP40, metal binding protein; 3.00A {Physarum polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A Length = 323

 Score = 93.0 bits (231), Expect = 3e-21
 Identities = 32/201 (15%), Positives = 67/201 (33%), Gaps = 43/201 (21%)

Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFL 320
             R+ F   A +  G   +  +L  ++     +     LKK          G++S+   +
Sbjct: 123 ILRQLFLSSAVSGSGKF-SFQDLKQVLAKYADTIPEGPLKKLFVMVENDTKGRMSYITLV 181

Query: 321 KVMHTH------------------SKAE----------DIPKEVVDAFKAADTTKSGKLS 352
            V +                    S+ E          D        F+ AD  +S  + 
Sbjct: 182 AVANDLAALVADFRKIDTNSNGTLSRKEFREHFVRLGFDKKSVQDALFRYADEDESDDVG 241

Query: 353 FPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWG-EGLSSKEVDQ 411
           F +++ +                 +  AD  KSG +  + ++ VL +      + K+ + 
Sbjct: 242 FSEYVHLGLCLLVLRI-------LYAFADFDKSGQLSKEEVQKVLEDAHIPESARKKFEH 294

Query: 412 IFREANVTMNSKVRYEDFVKI 432
            F   +V  +  + Y++FV +
Sbjct: 295 QFSVVDVDDSKSLSYQEFVML 315

>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding protein, CBP40, metal binding protein; 3.00A {Physarum polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A Length = 323

 Score = 52.5 bits (126), Expect = 8e-08
 Identities = 19/133 (14%), Positives = 45/133 (33%), Gaps = 7/133 (5%)

Query: 300 IAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDI--PKEVVDAFKAADTTKSGKLSFPDFL 357
            A+L +Y  +   +    +  +     ++ +     + +    K  +   SG       L
Sbjct: 54  KAKLAEYDQKVQNEFDARERAEREREAARGDAAAEKQRLASLLKDLEDDASGYNR----L 109

Query: 358 KVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREAN 417
           +        ED    +   F ++  + SG    + LK VL  + + +    + ++F    
Sbjct: 110 RPSKPMLSEEDT-NILRQLFLSSAVSGSGKFSFQDLKQVLAKYADTIPEGPLKKLFVMVE 168

Query: 418 VTMNSKVRYEDFV 430
                ++ Y   V
Sbjct: 169 NDTKGRMSYITLV 181

>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein; HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A Length = 191

 Score = 88.3 bits (219), Expect = 1e-20
 Identities = 26/181 (14%), Positives = 57/181 (31%), Gaps = 44/181 (24%)

Query: 267 EFRECFFLFARN--GTIKTLDEL-----SVIMRSLGMSPTIAELKKYLAE---------K 310
             +  F     N  G I +LDE+      +++ +LG +P  A+  K   E          
Sbjct: 17  RHKHMFNFLDVNHNGKI-SLDEMVYKASDIVINNLGATPEQAKRHKDAVEAFFGGAGMKY 75

Query: 311 GGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIP 370
           G +  +P +++     +  E       +                              I 
Sbjct: 76  GVETDWPAYIEGWKKLATDELEKYAKNEP---------------------------TLIR 108

Query: 371 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFV 430
                 F   D  ++G +     K      G   SS++ ++ FR  ++  + ++  ++  
Sbjct: 109 IWGDALFDIVDKDQNGAITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDVDEMT 168

Query: 431 K 431
           +
Sbjct: 169 R 169

>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana} Length = 166

 Score = 86.8 bits (216), Expect = 2e-20
 Identities = 26/168 (15%), Positives = 57/168 (33%), Gaps = 39/168 (23%)

Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
             +E F +   +  G I T +EL   ++ +G +   +E+   +                 
Sbjct: 28  GLKEMFNMIDADKSGQI-TFEELKAGLKRVGANLKESEILDLMQA--------------- 71

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                             AD   SG + + +F+     H    +    +  AF   D   
Sbjct: 72  ------------------ADVDNSGTIDYKEFIAAT-LHLNKIEREDHLFAAFTYFDKDG 112

Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           SG +    L+        G+    ++++ R+ +   + ++ Y +FV +
Sbjct: 113 SGYITPDELQQACEE--FGVEDVRIEELMRDVDQDNDGRIDYNEFVAM 158

>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana} Length = 166

 Score = 44.8 bits (107), Expect = 8e-06
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 1/74 (1%)

Query: 357 LKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREA 416
           L+V+      E+I   + + F   D  KSG +  + LK  L   G  L   E+  + + A
Sbjct: 14  LRVIAESLSEEEI-AGLKEMFNMIDADKSGQITFEELKAGLKRVGANLKESEILDLMQAA 72

Query: 417 NVTMNSKVRYEDFV 430
           +V  +  + Y++F+
Sbjct: 73  DVDNSGTIDYKEFI 86

>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1} Length = 197

 Score = 84.9 bits (211), Expect = 2e-19
 Identities = 23/170 (13%), Positives = 57/170 (33%), Gaps = 39/170 (22%)

Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
             R  F     +  GT+ +  E+   ++ +G      ++                     
Sbjct: 58  NLRNIFIALDVDNSGTL-SSQEILDGLKKIGYQKIPPDIH-------------------- 96

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                           +  D+  SG++ + DFL       +     +  +  FK  D   
Sbjct: 97  -------------QVLRDIDSNASGQIHYTDFLAAT-IDKQTYLKKEVCLIPFKFFDIDG 142

Query: 385 SGTVPAKYLKHVLV--NWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           +G +  + LK +    +    L  K +D + +E ++  + ++ + +F+ +
Sbjct: 143 NGKISVEELKRIFGRDDIENPLIDKAIDSLLQEVDLNGDGEIDFHEFMLM 192

>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1} Length = 197

 Score = 48.7 bits (117), Expect = 6e-07
 Identities = 16/77 (20%), Positives = 34/77 (44%), Gaps = 1/77 (1%)

Query: 357 LKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREA 416
           L ++  H    +I   + + F A D   SGT+ ++ +   L   G      ++ Q+ R+ 
Sbjct: 44  LTIIAKHLCDVEI-NNLRNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQVLRDI 102

Query: 417 NVTMNSKVRYEDFVKIA 433
           +   + ++ Y DF+   
Sbjct: 103 DSNASGQIHYTDFLAAT 119

>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A Length = 172

 Score = 80.0 bits (198), Expect = 7e-18
 Identities = 24/169 (14%), Positives = 52/169 (30%), Gaps = 44/169 (26%)

Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSP-TIAELKKYLAEKGGKLSFPDFLKVM 323
                F    ++  G I +  EL   + +   +P     ++  ++               
Sbjct: 8   FLWNVFQRVDKDRSGVI-SDTELQQALSNGTWTPFNPVTVRSIISM-------------- 52

Query: 324 HTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTT 383
                               D      ++F +F  V            +  + F+  D  
Sbjct: 53  -------------------FDRENKAGVNFSEFTGVWKY-------ITDWQNVFRTYDRD 86

Query: 384 KSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
            SG +    LK  L  +G  LS +  D + R+ +     ++ ++DF++ 
Sbjct: 87  NSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQG 135

>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A Length = 172

 Score = 48.0 bits (115), Expect = 7e-07
 Identities = 18/102 (17%), Positives = 43/102 (42%), Gaps = 16/102 (15%)

Query: 267 EFRECFFLF--ARNGTIKTLDELSVIMRSLGMSPTIAEL----KKYLAEKGGKLSFPDFL 320
           +++  F  +    +G I   +EL   +   G   +        +K+  +  G+++F DF+
Sbjct: 75  DWQNVFRTYDRDNSGMI-DKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFI 133

Query: 321 KVMHTHSKAEDIPKEVVDAFKAADTTKSGK--LSFPDFLKVM 360
           +            + + D F+  DT + G   +S+  +L ++
Sbjct: 134 QGCIV-------LQRLTDIFRRYDTDQDGWIQVSYEQYLSMV 168

>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B* 2p6b_B 1aui_B 1m63_B* 1tco_B* Length = 155

 Score = 78.4 bits (194), Expect = 2e-17
 Identities = 27/173 (15%), Positives = 59/173 (34%), Gaps = 45/173 (26%)

Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
              + F     +  G++ +++E    +  L  +P +  +                     
Sbjct: 7   RLGKRFKKLDLDNSGSL-SVEEFMS-LPELQQNPLVQRV--------------------- 43

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                              DT  +G++ F +F++ +   S   D  +++  AF+  D  K
Sbjct: 44  ---------------IDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDK 88

Query: 385 SGTVPAKYLKHVLVN-WGEGLSSKE----VDQIFREANVTMNSKVRYEDFVKI 432
            G +    L  VL    G  L   +    VD+    A+   + ++ +E+F  +
Sbjct: 89  DGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAV 141

>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal binding protein; NMR {Entamoeba histolytica} SCOP: a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A Length = 134

 Score = 77.6 bits (192), Expect = 2e-17
 Identities = 19/168 (11%), Positives = 48/168 (28%), Gaps = 42/168 (25%)

Query: 269 RECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTH 326
              F     N  G + + +E+   +           L+                      
Sbjct: 3   EALFKEIDVNGDGAV-SYEEVKAFVSKKRAIKNEQLLQ---------------------- 39

Query: 327 SKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKE--VVDAFKAADTTK 384
                        FK+ D   +G++   +F K   +    +    +  +   +K  D   
Sbjct: 40  -----------LIFKSIDADGNGEIDQNEFAKFYGSIQGQDLSDDKIGLKVLYKLMDVDG 88

Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
            G +  + +       G     ++V +   +A+   +  +  E+F++ 
Sbjct: 89  DGKLTKEEVTSFFKKHGI----EKVAEQVMKADANGDGYITLEEFLEF 132

>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand, phosphoprotein, calcium binding; 2.65A {Homo sapiens} Length = 204

 Score = 79.3 bits (196), Expect = 2e-17
 Identities = 26/176 (14%), Positives = 48/176 (27%), Gaps = 45/176 (25%)

Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
                F    R+   ++   DE    +  LG+    AE +                    
Sbjct: 38  GLARFFRQLDRDGSRSL-DADEFRQGLAKLGLVLDQAEAE-------------------- 76

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                           +  D   SG L   +FL+ +     ++     +  AF   D + 
Sbjct: 77  -------------GVCRKWDRNGSGTLDLEEFLRAL-RPPMSQAREAVIAAAFAKLDRSG 122

Query: 385 SGTVPAKYLK-------HVLVNWGEGLSSKEVDQIFREANVTMNS-KVRYEDFVKI 432
            G V    L+       H  V  GE    + + +     + +    +V   +F   
Sbjct: 123 DGVVTVDDLRGVYSGRAHPKVRSGEWTEDEVLRRFLDNFDSSEKDGQVTLAEFQDY 178

>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand, phosphoprotein, calcium binding; 2.65A {Homo sapiens} Length = 204

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 1/78 (1%)

Query: 355 DFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFR 414
           + L+       A  I + +   F+  D   S ++ A   +  L   G  L   E + + R
Sbjct: 22  EKLRAQCLSRGASGI-QGLARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCR 80

Query: 415 EANVTMNSKVRYEDFVKI 432
           + +   +  +  E+F++ 
Sbjct: 81  KWDRNGSGTLDLEEFLRA 98

>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A Length = 191

 Score = 77.3 bits (191), Expect = 1e-16
 Identities = 25/173 (14%), Positives = 55/173 (31%), Gaps = 44/173 (25%)

Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           + +  F +   +  G I T ++L   +   G                             
Sbjct: 53  KLKSTFLVLDEDGKGYI-TKEQLKKGLEKDG----------------------------- 82

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                  +P          D+  SGK+ + +F+       +     K +  AF+  D   
Sbjct: 83  -----LKLPYNFDLLLDQIDSDGSGKIDYTEFIAAALDRKQLSK--KLIYCAFRVFDVDN 135

Query: 385 SGTVPAKYLKHVLVNWGEGLSS-----KEVDQIFREANVTMNSKVRYEDFVKI 432
            G +    L H+L N  +  +        V ++ R+ +   + K+ + +F ++
Sbjct: 136 DGEITTAELAHILYNGNKKGNITQRDVNRVKRMIRDVDKNNDGKIDFHEFSEM 188

>3akb_A Putative calcium binding protein; EF-hand, metal binding protein; 1.50A {Streptomyces coelicolor} PDB: 3aka_A Length = 166

 Score = 76.3 bits (188), Expect = 1e-16
 Identities = 23/174 (13%), Positives = 44/174 (25%), Gaps = 29/174 (16%)

Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
                F  F ++  G I    + S   +++     +A                   + + 
Sbjct: 5   RIAARFTTFDQDGNGHI-DRSDFSGAAKAMLAEFGVAARSDRGQAL--YGGAEALWQGL- 60

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSK------AEDIPKEVVDAFK 378
                             AD     +++  +F+       +      AE     +  A  
Sbjct: 61  ---------------AGIADRDGDQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALG 105

Query: 379 AADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
            ADT   G V        L  +  G+      Q     +   + KV   + V  
Sbjct: 106 VADTDGDGAVTVADTARALTAF--GVPEDLARQAAAALDTDGDGKVGETEIVPA 157

>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Beroe abyssicola} Length = 208

 Score = 77.2 bits (190), Expect = 1e-16
 Identities = 23/180 (12%), Positives = 52/180 (28%), Gaps = 43/180 (23%)

Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLG--MSPTIAELKKYLAEKGGKLSFPDFLKV 322
              + F  F  +  G +  +DE+      +   ++ T  +++K                 
Sbjct: 37  RLYKRFDTFDLDSDGKM-EMDEVLYWPDRMRQLVNATDEQVEKMRDA------------- 82

Query: 323 MHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEV--------- 373
                        V   F          L   D+++     ++AE   +           
Sbjct: 83  -------------VRVFFLHKGVEPVNGLLREDWVEANRVFAEAERERERRGEPSLIALL 129

Query: 374 -VDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
               +   D    GTV    LK ++  +   +  +     F +A+   + K+   + V +
Sbjct: 130 SNSYYDVLDDDGDGTVDVDELKTMMKAF--DVPQEAAYTFFEKADTDKSGKLERTELVHL 187

>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence, southeast collabora structural genomics, secsg, structural genomics, PSI; HET: CTZ; 1.72A {Renilla muelleri} PDB: 2hq8_A Length = 186

 Score = 75.9 bits (187), Expect = 2e-16
 Identities = 20/174 (11%), Positives = 47/174 (27%), Gaps = 33/174 (18%)

Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           + +           G I + ++  +I   +     ++                       
Sbjct: 15  KMKTRMQRVDVTGDGFI-SREDYELIAVRIAKIAKLSA---------------------- 51

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVV------DAFK 378
              KAE+  +E +            ++S  +               ++ +        + 
Sbjct: 52  --EKAEETRQEFLRVADQLGLAPGVRISVEEAAVNATDSLLKMKGEEKAMAVIQSLIMYD 109

Query: 379 AADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
             DT K G V     K  L   G  L+  +    F   +   N ++  ++F+  
Sbjct: 110 CIDTDKDGYVSLPEFKAFLQAVGPDLTDDKAITCFNTLDFNKNGQISRDEFLVT 163

>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence, southeast collabora structural genomics, secsg, structural genomics, PSI; HET: CTZ; 1.72A {Renilla muelleri} PDB: 2hq8_A Length = 186

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 15/102 (14%), Positives = 30/102 (29%), Gaps = 13/102 (12%)

Query: 278 NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKG----------GKLSFPDFLKVMHTHS 327
              I   +       SL       +    +              G +S P+F   +    
Sbjct: 73  GVRISVEEAAVNATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDGYVSLPEFKAFLQAVG 132

Query: 328 KAEDIPKEVVD-AFKAADTTKSGKLSFPDFLKVMHTHSKAED 368
              D+  +     F   D  K+G++S  +FL  ++      +
Sbjct: 133 --PDLTDDKAITCFNTLDFNKNGQISRDEFLVTVNDFLFGLE 172

>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum} Length = 180

 Score = 75.0 bits (185), Expect = 4e-16
 Identities = 21/176 (11%), Positives = 55/176 (31%), Gaps = 50/176 (28%)

Query: 267 EFRECFFLF--ARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
              E F+      NG++ +  E+  ++ S+G+                            
Sbjct: 40  YINELFYKLDTNHNGSL-SHREIYTVLASVGIKKW------------------------- 73

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                     ++    +A D    G +++ +F+   +     E     +  AF   D  +
Sbjct: 74  ----------DINRILQALDINDRGNITYTEFMAGCYRWKNIES--TFLKAAFNKIDKDE 121

Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREA--------NVTMNSKVRYEDFVKI 432
            G +    +  ++    + L + ++D  F              + +K+ +++F   
Sbjct: 122 DGYISKSDIVSLVH--DKVLDNNDIDNFFLSVHSIKKGIPREHIINKISFQEFKDY 175

>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana} Length = 135

 Score = 73.9 bits (182), Expect = 4e-16
 Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 1/100 (1%)

Query: 334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYL 393
                      +T   +  + D L VM      E+   E+   F      +   + A+ L
Sbjct: 3   PTEKSMLLETTSTTKMETKYEDMLPVMAEKMDVEEFVSELCKGFSLLADPERHLITAESL 62

Query: 394 KHVLVNWG-EGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           +      G EG+S ++   + RE ++  +  +   +F  +
Sbjct: 63  RRNSGILGIEGMSKEDAQGMVREGDLDGDGALNQTEFCVL 102

>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium binding, EF-hand superfamily, S genomics, protein structure initiative, PSI; 2.10A {Danio rerio} PDB: 2q4u_A Length = 272

 Score = 75.9 bits (186), Expect = 1e-15
 Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 46/187 (24%)

Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
            F + +  F  +  G I    EL    R +                          K+  
Sbjct: 12  GFLQIWQHFDADDNGYI-EGKELDDFFRHMLK------------------------KLQP 46

Query: 325 THSKAEDIPKEVVDAF-KAADTTKSGKLSFPDFLKVMHT----------HSKAEDIPKEV 373
                ++  +++  +F  A D T  G+L   +   ++                 D   E 
Sbjct: 47  KDKITDERVQQIKKSFMSAYDATFDGRLQIEELANMILPQEENFLLIFRREAPLDNSVEF 106

Query: 374 VDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSK--------EVDQIFREANVTMNSKVR 425
           +  ++  D   SG + A  LK+ L +       K          D + +  +   + ++ 
Sbjct: 107 MKIWRKYDADSSGYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLD 166

Query: 426 YEDFVKI 432
             D  +I
Sbjct: 167 LNDLARI 173

>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium binding, EF-hand superfamily, S genomics, protein structure initiative, PSI; 2.10A {Danio rerio} PDB: 2q4u_A Length = 272

 Score = 56.6 bits (136), Expect = 4e-09
 Identities = 21/186 (11%), Positives = 55/186 (29%), Gaps = 45/186 (24%)

Query: 267 EFRECFFLFARNGTIK-TLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHT 325
           EF + +  +  + +   +  EL   ++ L +          L E                
Sbjct: 105 EFMKIWRKYDADSSGYISAAELKNFLKDLFLQHKKKIPPNKLDE---------------- 148

Query: 326 HSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHT-----------HSKAEDIPKEVV 374
                          K  D  K G+L   D  +++              S   +  ++  
Sbjct: 149 ---------YTDAMMKIFDKNKDGRLDLNDLARILALQENFLLQFKMDASSQVERKRDFE 199

Query: 375 DAFKAADTTKSGTVPAKYLKHVLVNWGE----GLSSKEVDQ----IFREANVTMNSKVRY 426
             F   D +++G +    +   + +  E     +S  ++D+    +    ++  + K++ 
Sbjct: 200 KIFAHYDVSRTGALEGPEVDGFVKDMMELVRPSISGGDLDKFRECLLTHCDMNKDGKIQK 259

Query: 427 EDFVKI 432
            +    
Sbjct: 260 SELALC 265

>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent kinase, structural genomics, structural GE consortium, SGC, ATP-binding; 1.95A {Toxoplasma gondii} Length = 191

 Score = 73.1 bits (180), Expect = 3e-15
 Identities = 26/179 (14%), Positives = 58/179 (32%), Gaps = 50/179 (27%)

Query: 267 EFRECFFLFARN--GTIKTLDELSV-----------IMRSLGMSPTIAELKKYLAEKGGK 313
           E  + F     N  G +    EL              +  L  S   AE+          
Sbjct: 41  ELTQIFRQLDNNGDGQL-DRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVD--------- 90

Query: 314 LSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEV 373
                                      ++ D  ++G + + +F+ V     +     + +
Sbjct: 91  ------------------------HILQSVDFDRNGYIEYSEFVTVC-MDKQLLLSRERL 125

Query: 374 VDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           + AF+  D+  SG +  + L  +       +  +   Q+ +E +   + +V +E+FV++
Sbjct: 126 LAAFQQFDSDGSGKITNEELGRLFGV--TEVDDETWHQVLQECDKNNDGEVDFEEFVEM 182

>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A Length = 110

 Score = 70.3 bits (173), Expect = 4e-15
 Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 19/121 (15%)

Query: 315 SFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVV 374
           +  D LK             ++  A  A      G  +   F  ++   + + +   +V 
Sbjct: 2   AAKDLLK-----------ADDIKKALDAVK--AEGSFNHKKFFALVGLKAMSAN---DVK 45

Query: 375 DAFKAADTTKSGTVPAKYLKHVLVN---WGEGLSSKEVDQIFREANVTMNSKVRYEDFVK 431
             FKA D   SG +  + LK VL +    G  L+  E     + A+   + K+  ++F  
Sbjct: 46  KVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKIGIDEFET 105

Query: 432 I 432
           +
Sbjct: 106 L 106

>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5 Length = 176

 Score = 71.7 bits (176), Expect = 5e-15
 Identities = 23/178 (12%), Positives = 49/178 (27%), Gaps = 38/178 (21%)

Query: 267 EFRECFFLFARN--GTIKTLDELSV----IMRSLGMSPTIAELKKYLAEKGGKLSFPDFL 320
             ++ F  +  +  G +    +       I  + G     AE++          +F    
Sbjct: 8   RLKKRFDRWDFDGNGAL-ERADFEKEAQHIAEAFGKDAGAAEVQTLKN------AFGGLF 60

Query: 321 KVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAED-------IPKEV 373
             +                 K A     G L+   F++V       +        +   V
Sbjct: 61  DYL----------------AKEAGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVV 104

Query: 374 VDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVK 431
                  D    G + A      L     G+S  E  + F + +   N ++  ++ + 
Sbjct: 105 KGIVGMCDKNADGQINADEFAAWLTAL--GMSKAEAAEAFNQVDTNGNGELSLDELLT 160

>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A Length = 90

 Score = 68.8 bits (169), Expect = 8e-15
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 7/70 (10%)

Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFL 320
           EF+  F +F     G I +  EL  +MR LG +PT  EL   + E      G + F +FL
Sbjct: 21  EFKAAFDMFDADGGGDI-STKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFL 79

Query: 321 KVMHTHSKAE 330
            +M    K +
Sbjct: 80  VMMVRQMKED 89

>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A Length = 90

 Score = 45.7 bits (109), Expect = 9e-07
 Identities = 16/66 (24%), Positives = 31/66 (46%)

Query: 367 EDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRY 426
           E++  E   AF   D    G +  K L  V+   G+  + +E+D I  E +   +  + +
Sbjct: 16  EEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDF 75

Query: 427 EDFVKI 432
           E+F+ +
Sbjct: 76  EEFLVM 81

>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus} Length = 94

 Score = 68.1 bits (167), Expect = 1e-14
 Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 1/83 (1%)

Query: 350 KLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEV 409
             S  + L    +  K  D  +E+ +AF+  D   +G + A  L+HV+ N GE L+ +EV
Sbjct: 9   HGSSGENL-YFQSLMKDTDSEEEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEV 67

Query: 410 DQIFREANVTMNSKVRYEDFVKI 432
           D++ REA++  + +V YE+FV++
Sbjct: 68  DEMIREADIDGDGQVNYEEFVQM 90

>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus} Length = 94

 Score = 48.8 bits (117), Expect = 8e-08
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 7/63 (11%)

Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFL 320
           E RE F +  +  NG I +  EL  +M +LG   T  E+ + + E      G++++ +F+
Sbjct: 30  EIREAFRVEDKDGNGYI-SAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 88

Query: 321 KVM 323
           ++M
Sbjct: 89  QMM 91

>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus} Length = 77

 Score = 67.5 bits (166), Expect = 1e-14
 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 7/71 (9%)

Query: 267 EFRECFFLF--ARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFL 320
           E +E F LF   + G+I    EL V MR+LG      E+ + + E      G + F DFL
Sbjct: 8   EIKEAFDLFDTNKTGSI-DYHELKVAMRALGFDVKKPEILELMNEYDREGNGYIGFDDFL 66

Query: 321 KVMHTHSKAED 331
            +M    K  D
Sbjct: 67  DIMTEKIKNRD 77

>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus} Length = 77

 Score = 46.7 bits (112), Expect = 3e-07
 Identities = 16/62 (25%), Positives = 32/62 (51%)

Query: 371 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFV 430
           +E+ +AF   DT K+G++    LK  +   G  +   E+ ++  E +   N  + ++DF+
Sbjct: 7   QEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYIGFDDFL 66

Query: 431 KI 432
            I
Sbjct: 67  DI 68

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 71.1 bits (175), Expect = 7e-14
 Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 6/84 (7%)

Query: 66  LSLSYTPIGR---RIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIP 122
           L L   P+ +   + F+   ++ +++ +  L  LP  + +   L  L L  N L+  ++P
Sbjct: 86  LELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALP 143

Query: 123 FTLTFCKNLTHLYL-DNNLLDALP 145
            ++     L  L +     L  LP
Sbjct: 144 ASIASLNRLRELSIRACPELTELP 167

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 69.2 bits (170), Expect = 4e-13
 Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 4/82 (4%)

Query: 84  EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL-DNNLLD 142
           + L L+   + SLP  I  L NL+ L + ++ L   ++   +     L  L L     L 
Sbjct: 186 QSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS--ALGPAIHHLPKLEELDLRGCTALR 243

Query: 143 ALPGFLLSMPQLDTVY-RHGNH 163
             P        L  +  +  ++
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSN 265

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 68.0 bits (167), Expect = 8e-13
 Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 8/88 (9%)

Query: 84  EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDN--------CLQNASIPFTLTFCKNLTHLY 135
           E L+L  N L +LP  I  L  LR L +            L +           NL  L 
Sbjct: 130 ETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLR 189

Query: 136 LDNNLLDALPGFLLSMPQLDTVYRHGNH 163
           L+   + +LP  + ++  L ++    + 
Sbjct: 190 LEWTGIRSLPASIANLQNLKSLKIRNSP 217

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 66.1 bits (162), Expect = 4e-12
 Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 3/78 (3%)

Query: 77  IFKCDTVEVLSLKS-NSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLY 135
                 ++ L LK  ++L +LP DI RLT L  L L   C+  + +P  +        + 
Sbjct: 249 FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL-RGCVNLSRLPSLIAQLPANCIIL 307

Query: 136 LDNNLLDALPGFLL-SMP 152
           +  +L   L      + P
Sbjct: 308 VPPHLQAQLDQHRPVARP 325

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 58.0 bits (141), Expect = 2e-09
 Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 4/73 (5%)

Query: 84  EVLSLKSNSLTSLPPDIGRLT--NLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLL 141
           ++ +    +L +    +   T      L L    L     P       +L H+ +D   L
Sbjct: 59  QIETRTGRALKATADLLEDATQPGRVALELRSVPLP--QFPDQAFRLSHLQHMTIDAAGL 116

Query: 142 DALPGFLLSMPQL 154
             LP  +     L
Sbjct: 117 MELPDTMQQFAGL 129

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 9/82 (10%), Positives = 18/82 (21%), Gaps = 4/82 (4%)

Query: 84  EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCK--NLTHLYLDNNLL 141
           +       +            N ++   T   L+  +    L          L L +  L
Sbjct: 36  QRHYNADRNRWHSAWRQANSNNPQIETRTGRALK--ATADLLEDATQPGRVALELRSVPL 93

Query: 142 DALPGFLLSMPQLDTVYRHGNH 163
              P     +  L  +      
Sbjct: 94  PQFPDQAFRLSHLQHMTIDAAG 115

>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A Length = 198

 Score = 69.0 bits (169), Expect = 9e-14
 Identities = 32/167 (19%), Positives = 57/167 (34%), Gaps = 39/167 (23%)

Query: 267 EFRECFFLFA-RNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHT 325
                F   A ++G I   DEL   +   G++                    +  ++M  
Sbjct: 34  PLYGYFAAVAGQDGQI-DADELQRCLTQSGIAGGYKPFN------------LETCRLM-- 78

Query: 326 HSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKS 385
                      V      D   SG + F +F ++                 F + DT +S
Sbjct: 79  -----------VSML---DRDMSGTMGFNEFKELWAVL-------NGWRQHFISFDTDRS 117

Query: 386 GTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           GTV  + L+  L   G  LS + V+ I +  +   N K+ ++D++  
Sbjct: 118 GTVDPQELQKALTTMGFRLSPQAVNSIAKRYST--NGKITFDDYIAC 162

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 72.0 bits (177), Expect = 1e-13
 Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 10/106 (9%)

Query: 66  LSLSYT-----PIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNAS 120
           + + Y      P+   + K   + +L    N L    P  G    L  L L  N +    
Sbjct: 310 IYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT--E 367

Query: 121 IPFTL-TFCKNLTHLYLDNNLLDALP--GFLLSMPQLDTVYRHGNH 163
           IP     F + + +L   +N L  +P      S+  +  +    N 
Sbjct: 368 IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNE 413

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 67.0 bits (164), Expect = 4e-12
 Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 28/136 (20%)

Query: 56  IPQYFSHAFLLSLSY---------TPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNL 106
              Y        L             I +          +   SN++T +   + RLT L
Sbjct: 149 FVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKL 208

Query: 107 RVLCLTDN------------------CLQNASIPFTLTFCKNLTHLYL-DNNLLDALPGF 147
           R   + ++                    Q  +        K+LT + + +   L  LP F
Sbjct: 209 RQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF 268

Query: 148 LLSMPQLDTVYRHGNH 163
           L ++P++  +    N 
Sbjct: 269 LKALPEMQLINVACNR 284

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 14/89 (15%), Positives = 29/89 (32%), Gaps = 5/89 (5%)

Query: 67  SLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNA-----SI 121
            L+      R      +  + L  NS +  P      + L+   + +             
Sbjct: 499 KLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREW 558

Query: 122 PFTLTFCKNLTHLYLDNNLLDALPGFLLS 150
           P  +T C +LT L + +N +  +   +  
Sbjct: 559 PEGITLCPSLTQLQIGSNDIRKVNEKITP 587

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.1 bits (154), Expect = 7e-11
 Identities = 17/96 (17%), Positives = 27/96 (28%), Gaps = 12/96 (12%)

Query: 79  KCDTVEVLSLKSNSLTSLPPD--------IGRLTNLRVLCLTDNCLQNASIP--FTLTFC 128
               +  ++L  N LT +P +              L  + L  N L    +   F  T  
Sbjct: 455 TGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT--KLSDDFRATTL 512

Query: 129 KNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNHN 164
             L  + L  N     P   L+   L         +
Sbjct: 513 PYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRD 548

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 18/95 (18%), Positives = 25/95 (26%), Gaps = 11/95 (11%)

Query: 69  SYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDI--GRLTNLRVLCLTDNCLQNASIPFTLT 126
           S             +  + L+ N LT L  D     L  L  + L+ N       P    
Sbjct: 476 SLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFS--KFPTQPL 533

Query: 127 FCKNLTHLYL-------DNNLLDALPGFLLSMPQL 154
               L    +        N  L   P  +   P L
Sbjct: 534 NSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSL 568

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 1/68 (1%)

Query: 84  EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
             L+L  N +T +P +  G    +  L    N L+     F       ++ +    N + 
Sbjct: 356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIG 415

Query: 143 ALPGFLLS 150
           ++ G    
Sbjct: 416 SVDGKNFD 423

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 16/92 (17%), Positives = 30/92 (32%), Gaps = 9/92 (9%)

Query: 67  SLSYTPIGRRIFKCDTVEVLSLKSNSLTS--------LPPDIGRLTNLRVLCLTDNCLQN 118
            L Y P          +  +    N + S        L P   +  N+  + L++N +  
Sbjct: 388 KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK 447

Query: 119 ASIPFTLTFCKNLTHLYLDNNLLDALPGFLLS 150
                  +    L+ + L  N+L  +P   L 
Sbjct: 448 -FPKELFSTGSPLSSINLMGNMLTEIPKNSLK 478

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 14/110 (12%), Positives = 36/110 (32%), Gaps = 15/110 (13%)

Query: 66  LSLSY---TPIGRRIFKCDTVEVLSLKSNS-------LTSLPPDIGRLTNLRVLCLTDNC 115
           + LSY   +    +     T++   +++         L   P  I    +L  L +  N 
Sbjct: 518 IDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577

Query: 116 LQNASIPFTLTFCKNLTHLYL-DNNLLDALPGFLLSMPQLDTVYRHGNHN 164
           ++   +   +    N++ L + DN  +     ++    +        +  
Sbjct: 578 IR--KVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 11/90 (12%), Positives = 28/90 (31%), Gaps = 8/90 (8%)

Query: 64  FLLSLSYTPIGRRIFKCDTVEVLSLKSNS-LTSLPPDIGRLTNLRVLCLTDNCLQ----- 117
              +  Y     +      +  + + +   LT LP  +  L  ++++ +  N        
Sbjct: 232 SEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQL 291

Query: 118 --NASIPFTLTFCKNLTHLYLDNNLLDALP 145
             +          + +  +Y+  N L   P
Sbjct: 292 KDDWQALADAPVGEKIQIIYIGYNNLKTFP 321

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.0 bits (138), Expect = 6e-09
 Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 2/76 (2%)

Query: 83  VEVLSLKSNSLT-SLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHL-YLDNNL 140
           V  LSL+    +  +P  IG+LT L VL L  +  +     F                  
Sbjct: 83  VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR 142

Query: 141 LDALPGFLLSMPQLDT 156
           +     F+   P+ D 
Sbjct: 143 MHYQKTFVDYDPREDF 158

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.0 bits (138), Expect = 7e-09
 Identities = 14/96 (14%), Positives = 33/96 (34%), Gaps = 9/96 (9%)

Query: 77  IFKCDTVEVLSLKSNSLTSLP---------PDIGRLTNLRVLCLTDNCLQNASIPFTLTF 127
           +     ++++++  N   S            D      ++++ +  N L+   +  +L  
Sbjct: 269 LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK 328

Query: 128 CKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
            K L  L    N L+       S  +L ++    N 
Sbjct: 329 MKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ 364

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 13/111 (11%), Positives = 29/111 (26%), Gaps = 10/111 (9%)

Query: 66  LSLSYTPIGRRIFKCDTVEVLSLKSNS-LTSLPPDIGRLTNLRVLCLTDNCLQNASIPFT 124
             +  +P       C+  E  + +      +       L +L  + +  NC     +P  
Sbjct: 211 FYMGNSPFVAENI-CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVY-NCPNLTKLPTF 268

Query: 125 LTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGN-------HNYFKS 168
           L     +  + +  N   +          L               +N  K+
Sbjct: 269 LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT 319

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 18/95 (18%), Positives = 29/95 (30%), Gaps = 11/95 (11%)

Query: 58  QYFSHAFLLSLSY----TPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTD 113
           + F                    I  C ++  L + SN +  +   I    N+ VL + D
Sbjct: 539 KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKD 596

Query: 114 NCLQNASIPFTLTFCK--NLTHLYLDNNLLDALPG 146
           N   N SI  +   C         L  +    + G
Sbjct: 597 N--PNISIDLS-YVCPYIEAGMYMLFYDKTQDIRG 628

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 10/109 (9%), Positives = 26/109 (23%), Gaps = 6/109 (5%)

Query: 59  YFSHAFLLSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQN 118
                           + I    + E               +          L  +C+ +
Sbjct: 111 ALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQ--KTFVDYDPREDFSDLIKDCINS 168

Query: 119 ----ASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
                SI  +       T +   +N +  +   ++ + +L   Y   + 
Sbjct: 169 DPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSP 217

>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein; 1.90A {Homo sapiens} Length = 107

 Score = 65.9 bits (161), Expect = 1e-13
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 7/63 (11%)

Query: 267 EFRECFFLF--ARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFL 320
            F+E +  F    NG I  +  L  ++  LG+  T  ELKK + E     G   S+PDFL
Sbjct: 33  GFKEKYMEFDLNGNGDI-DIMSLKRMLEKLGVPKTHLELKKLIGEVSSGSGETFSYPDFL 91

Query: 321 KVM 323
           ++M
Sbjct: 92  RMM 94

>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein; 1.90A {Homo sapiens} Length = 107

 Score = 44.7 bits (106), Expect = 3e-06
 Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 4/93 (4%)

Query: 340 FKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN 399
            +  D      L  P +       SK E   KE    +   D   +G +    LK +L  
Sbjct: 5   EERLDEINKQFLDDPKYSSDEDLPSKLEGF-KE---KYMEFDLNGNGDIDIMSLKRMLEK 60

Query: 400 WGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
            G   +  E+ ++  E +        Y DF+++
Sbjct: 61  LGVPKTHLELKKLIGEVSSGSGETFSYPDFLRM 93

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 70.0 bits (172), Expect = 2e-13
 Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 4/83 (4%)

Query: 84  EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLL-- 141
           + L L SN L  + P+      +  + L +N L    I   L F +NL H  L  N    
Sbjct: 194 KTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV--LIEKALRFSQNLEHFDLRGNGFHC 251

Query: 142 DALPGFLLSMPQLDTVYRHGNHN 164
             L  F     ++ TV +     
Sbjct: 252 GTLRDFFSKNQRVQTVAKQTVKK 274

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 5/82 (6%)

Query: 84  EVLSLKSNSLTSLPPD--IGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLL 141
           + L LK N + ++           L  L L  N +    +         L  L L +N L
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY--DVK-GQVVFAKLKTLDLSSNKL 203

Query: 142 DALPGFLLSMPQLDTVYRHGNH 163
             +     S   +  +    N 
Sbjct: 204 AFMGPEFQSAAGVTWISLRNNK 225

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 61.5 bits (150), Expect = 1e-10
 Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 7/102 (6%)

Query: 66  LSLSYTPIGR---RIFKCDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASI 121
           L  +   I R      +    + + L +N +T L     G  + ++ L L  N +   + 
Sbjct: 104 LHAANNNISRVSCSRGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161

Query: 122 PFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
                    L HL L  N +  + G  +   +L T+    N 
Sbjct: 162 AELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNK 202

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 59.6 bits (145), Expect = 5e-10
 Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 5/82 (6%)

Query: 84  EVLSLKSNSLTSLPPDIGR-LTNLRVLCLTDNCLQNASIPF-TLTFCKNLTHLYLDNNLL 141
           ++  +  +SL      + +   N++ L L+ N L    I    L     L  L L +N+L
Sbjct: 13  KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS--QISAADLAPFTKLELLNLSSNVL 70

Query: 142 DALPGFLLSMPQLDTVYRHGNH 163
                   S+  L T+  + N+
Sbjct: 71  YETLDL-ESLSTLRTLDLNNNY 91

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 4/94 (4%)

Query: 66  LSLSY---TPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIP 122
           L LS      +G        V  +SL++N L  +   +    NL    L  N     ++ 
Sbjct: 196 LDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLR 255

Query: 123 FTLTFCKNLTHLYLDNN-LLDALPGFLLSMPQLD 155
              +  + +  +       L        ++P L 
Sbjct: 256 DFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 11/89 (12%)

Query: 66  LSLSY---TPIGRRIFK-CDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASI 121
           L LS    + I          +E+L+L SN L      +  L+ LR L L +N +Q    
Sbjct: 39  LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQ---- 93

Query: 122 PFTLTFCKNLTHLYLDNNLLDALPGFLLS 150
              L    ++  L+  NN +  +      
Sbjct: 94  --ELLVGPSIETLHAANNNISRVSCSRGQ 120

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 2/61 (3%)

Query: 95  SLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALP-GFLLSMPQ 153
           ++          ++  +TD+ L+ A +        N+  L L  N L  +    L    +
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQA-LASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59

Query: 154 L 154
           L
Sbjct: 60  L 60

>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A Length = 165

 Score = 67.0 bits (164), Expect = 2e-13
 Identities = 27/166 (16%), Positives = 55/166 (33%), Gaps = 39/166 (23%)

Query: 268 FRECFFLFA-RNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTH 326
               F   A ++G +   +EL   +   G++ T +                +  ++M   
Sbjct: 2   VYTYFSAVAGQDGEV-DAEELQRCLTQSGINGTYSPFS------------LETCRIM--- 45

Query: 327 SKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSG 386
                     +      D   +GK+ F  F ++               + F   D   SG
Sbjct: 46  ----------IAML---DRDHTGKMGFNAFKELWAA-------LNAWKENFMTVDQDGSG 85

Query: 387 TVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           TV    L+  +   G  LS + +  I +  +   N ++ ++D+V  
Sbjct: 86  TVEHHELRQAIGLMGYRLSPQTLTTIVKRYS--KNGRIFFDDYVAC 129

>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A Length = 165

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 14/100 (14%)

Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE--KGGKLSFPDFLKV 322
            ++E F    ++  GT++   EL   +  +G   +   L   +    K G++ F D++  
Sbjct: 71  AWKENFMTVDQDGSGTVEH-HELRQAIGLMGYRLSPQTLTTIVKRYSKNGRIFFDDYVAC 129

Query: 323 MHTHSKAEDIPKEVVDAFKAADTTKSGK--LSFPDFLKVM 360
                      + + D F+  D  + G     + DFL+  
Sbjct: 130 CVKL-------RALTDFFRKRDHLQQGSANFIYDDFLQGT 162

>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo pealeii} Length = 191

 Score = 67.6 bits (165), Expect = 2e-13
 Identities = 23/177 (12%), Positives = 54/177 (30%), Gaps = 32/177 (18%)

Query: 267 EFRECFFLFA---RNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVM 323
           +    F  F     +G I   D+  + ++ +                          +  
Sbjct: 13  KILRVFNTFYDCNHDGVI-EWDDFELAIKKIC------------NLHSWPTDGKKHNEAR 59

Query: 324 HTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDA------- 376
            T     D         K AD  +  +++  ++LK+     K+ +  + + +        
Sbjct: 60  ATLKLIWD------GLRKYADENEDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNF 113

Query: 377 -FKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
            F   DT+    +       V +++  G+   + D  F   +    + V  E F ++
Sbjct: 114 MFDVNDTSGDNIIDKHEYSTVYMSY--GIPKSDCDAAFDTLSDGGKTMVTREIFARL 168

>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A Length = 109

 Score = 64.2 bits (157), Expect = 4e-13
 Identities = 30/121 (24%), Positives = 46/121 (38%), Gaps = 19/121 (15%)

Query: 315 SFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVV 374
           S  D L        AEDI K+ + AF AA            F +++    K+ D   +V 
Sbjct: 1   SMTDLLS-------AEDI-KKAIGAFTAA-----DSFDHKKFFQMVGLKKKSAD---DVK 44

Query: 375 DAFKAADTTKSGTVPAKYLKHVLVN---WGEGLSSKEVDQIFREANVTMNSKVRYEDFVK 431
             F   D  KSG +    L  +L         LS+KE   +    +   + K+  E+F  
Sbjct: 45  KVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVEEFST 104

Query: 432 I 432
           +
Sbjct: 105 L 105

>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin crosslinking, ionized calciu binding adapter molecule 2, metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B 2vtg_A Length = 150

 Score = 65.6 bits (160), Expect = 5e-13
 Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 13/94 (13%)

Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFL 320
            F+E +  F  N  G I  L  L  +M  LG+  T  E+KK ++E        +S+ DF+
Sbjct: 51  AFKEKYMEFDLNNEGEI-DLMSLKRMMEKLGVPKTHLEMKKMISEVTGGVSDTISYRDFV 109

Query: 321 KVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFP 354
            +M    K   + K         +   +     P
Sbjct: 110 NMM--LGKRSAVLK----LVMMFEGKANESSPKP 137

>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin crosslinking, ionized calciu binding adapter molecule 2, metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B 2vtg_A Length = 150

 Score = 44.8 bits (106), Expect = 6e-06
 Identities = 11/66 (16%), Positives = 25/66 (37%)

Query: 367 EDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRY 426
            +      + +   D    G +    LK ++   G   +  E+ ++  E    ++  + Y
Sbjct: 46  PEKLTAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGVSDTISY 105

Query: 427 EDFVKI 432
            DFV +
Sbjct: 106 RDFVNM 111

>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A Length = 108

 Score = 63.0 bits (154), Expect = 1e-12
 Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 8/101 (7%)

Query: 335 EVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLK 394
           +V  A  A     +      +F   +   SK+ D   +V  AF   D  KSG +    LK
Sbjct: 10  DVAAALAACS--AADSFKHKEFFAKVGLASKSLD---DVKKAFYVIDQDKSGFIEEDELK 64

Query: 395 HVLVN---WGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
             L N       L+  E      + +   +  +  ++F  +
Sbjct: 65  LFLQNFSPSARALTDAETKAFLADGDKDGDGMIGVDEFAAM 105

>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A Length = 108

 Score = 47.9 bits (115), Expect = 3e-07
 Identities = 20/92 (21%), Positives = 31/92 (33%), Gaps = 7/92 (7%)

Query: 301 AELKKYLAE--KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLK 358
           A++   LA           +F   +   SK+ D   +V  AF   D  KSG +   +   
Sbjct: 9   ADVAAALAACSAADSFKHKEFFAKVGLASKSLD---DVKKAFYVIDQDKSGFIEEDELKL 65

Query: 359 VMHTHS-KAEDIPKEVVDAF-KAADTTKSGTV 388
            +   S  A  +      AF    D    G +
Sbjct: 66  FLQNFSPSARALTDAETKAFLADGDKDGDGMI 97

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 68.7 bits (168), Expect = 2e-12
 Identities = 20/113 (17%), Positives = 38/113 (33%), Gaps = 16/113 (14%)

Query: 66  LSLSY---TPIGRRIF-KCDTVEVLSLKSNSLTSLPPD--------IGRLTNLRVLCLTD 113
           ++LSY         +F     +  + L +N +TS+P +              L  + L  
Sbjct: 678 VTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRF 737

Query: 114 NCLQNASIPFTLTFCK--NLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNHN 164
           N L   S+           L+++ +  N   + P   L+  QL         +
Sbjct: 738 NKLT--SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRD 788

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 67.6 bits (165), Expect = 3e-12
 Identities = 18/107 (16%), Positives = 39/107 (36%), Gaps = 6/107 (5%)

Query: 60  FSHAFLLSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPP--DIGRLTNLRVLCLTDNCLQ 117
              A  L   +T +         +++  +  N+L   P    + ++  L +L    N ++
Sbjct: 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR 586

Query: 118 NASIPFTLTFCKNLTHLYLDNNLLDALPGFLLS-MPQLDTVYRHGNH 163
              +         LT L LD N ++ +P    +   Q++ +    N 
Sbjct: 587 --HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK 630

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 66.8 bits (163), Expect = 6e-12
 Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 7/86 (8%)

Query: 84  EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNA-----SIPFTLTFCKNLTHLYLDN 138
             + +  N  +S P      + L+   +               P  +T C +L  L + +
Sbjct: 756 SNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGS 815

Query: 139 NLLDALPGFLLSMPQLDTVYRHGNHN 164
           N +  +   L   PQL  +    N N
Sbjct: 816 NDIRKVDEKLT--PQLYILDIADNPN 839

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.1 bits (156), Expect = 4e-11
 Identities = 22/135 (16%), Positives = 46/135 (34%), Gaps = 19/135 (14%)

Query: 48  GGICSHIWIPQYFSHAFLLSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLR 107
                 + +      A   +    PI +          +   +N +T +   I RLT L+
Sbjct: 392 LDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQ 451

Query: 108 VLCLTDNCL------------------QNASIPFTLTFCKNLTHLYL-DNNLLDALPGFL 148
           ++   ++                    Q  +   + +  K+LT + L +   +  LP FL
Sbjct: 452 IIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL 511

Query: 149 LSMPQLDTVYRHGNH 163
             +P+L ++    N 
Sbjct: 512 YDLPELQSLNIACNR 526

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.4 bits (149), Expect = 3e-10
 Identities = 20/131 (15%), Positives = 41/131 (31%), Gaps = 23/131 (17%)

Query: 56  IPQYFSHAFL-----LSLSY---------TPIGRRIFKCDTVEVLSLKSNSLTSLPPDI- 100
           IP  F+   +     +  SY                +K      ++L  N +   P ++ 
Sbjct: 634 IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELF 693

Query: 101 GRLTNLRVLCLTDNCLQN------ASIPFTLTFCKNLTHLYLDNNLLDALP--GFLLSMP 152
              + +  + L++N + +                  LT + L  N L +L       ++P
Sbjct: 694 ATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLP 753

Query: 153 QLDTVYRHGNH 163
            L  +    N 
Sbjct: 754 YLSNMDVSYNC 764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 60.7 bits (147), Expect = 5e-10
 Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 11/97 (11%)

Query: 77  IFKCDTVEVLSLKSNSLTS----------LPPDIGRLTNLRVLCLTDNCLQNASIPFTLT 126
           ++    ++ L++  N   S          L  D      +++  +  N L+      +L 
Sbjct: 511 LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQ 570

Query: 127 FCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
               L  L   +N +  L  F  +  +L  +    N 
Sbjct: 571 KMVKLGLLDCVHNKVRHLEAF-GTNVKLTDLKLDYNQ 606

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 60.3 bits (146), Expect = 6e-10
 Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 11/91 (12%)

Query: 84  EVLSLKSNS-LTSLPPDIGRLTNLRVLCLTDNCLQN--------ASIPFTLTFCKNLTHL 134
             + L +   +T LP  +  L  L+ L +  N   +          +         +   
Sbjct: 494 TDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553

Query: 135 YLDNNLLDALP--GFLLSMPQLDTVYRHGNH 163
           Y+  N L+  P    L  M +L  +    N 
Sbjct: 554 YMGYNNLEEFPASASLQKMVKLGLLDCVHNK 584

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.3 bits (141), Expect = 3e-09
 Identities = 15/96 (15%), Positives = 26/96 (27%), Gaps = 11/96 (11%)

Query: 77  IFKCDTVEVLSLKSNSLTSLPPDIGR-LTNLRVLCLTDNCLQNASIP--FTLTFCKNLTH 133
                 +  L L  N +  +P D       +  L  + N L+   IP  F       +  
Sbjct: 591 FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK--YIPNIFNAKSVYVMGS 648

Query: 134 LYLDNNLLDALPGFLLS------MPQLDTVYRHGNH 163
           +    N + +    +             TV    N 
Sbjct: 649 VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE 684

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.0 bits (140), Expect = 3e-09
 Identities = 12/110 (10%), Positives = 32/110 (29%), Gaps = 15/110 (13%)

Query: 66  LSLSY---TPIGRRIFKCDTVEVLSLKSNS-------LTSLPPDIGRLTNLRVLCLTDNC 115
           + +SY   +    +      ++   ++          L   P  I    +L  L +  N 
Sbjct: 758 MDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND 817

Query: 116 LQNASIPFTLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGNHN 164
           ++   +   L     L  L + +N   ++    +    +        +  
Sbjct: 818 IR--KVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.2 bits (138), Expect = 6e-09
 Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 7/85 (8%)

Query: 67  SLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIG------RLTNLRVLCLTDNCLQNAS 120
            L Y P          +  +    N + S   +I       +  N   + L+ N +Q   
Sbjct: 630 KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK-F 688

Query: 121 IPFTLTFCKNLTHLYLDNNLLDALP 145
                     ++ + L NNL+ ++P
Sbjct: 689 PTELFATGSPISTIILSNNLMTSIP 713

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.4 bits (123), Expect = 5e-07
 Identities = 15/72 (20%), Positives = 22/72 (30%), Gaps = 1/72 (1%)

Query: 83  VEVLSLKSNSLT-SLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLL 141
           V  LSL        +P  IG+LT L+VL    +    +   F              + + 
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIR 384

Query: 142 DALPGFLLSMPQ 153
                  L   Q
Sbjct: 385 MHYKKMFLDYDQ 396

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 17/112 (15%), Positives = 33/112 (29%), Gaps = 9/112 (8%)

Query: 66  LSLSY----TPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLT-NLRVLCLTDNCLQNAS 120
           LSL+       +   I +   ++VLS  ++S T      G       +     + ++   
Sbjct: 328 LSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHY 387

Query: 121 IPFTLTFCKNLTHLYLDNNLLDALPGFL----LSMPQLDTVYRHGNHNYFKS 168
               L + + L    L  + ++  P        S   L         N    
Sbjct: 388 KKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF 439

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 67.9 bits (166), Expect = 2e-12
 Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 4/83 (4%)

Query: 84  EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLL-- 141
           + L L SN L  + P+      +  + L +N L    I   L F +NL H  L  N    
Sbjct: 194 KTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV--LIEKALRFSQNLEHFDLRGNGFHC 251

Query: 142 DALPGFLLSMPQLDTVYRHGNHN 164
             L  F     ++ TV +     
Sbjct: 252 GTLRDFFSKNQRVQTVAKQTVKK 274

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 63.3 bits (154), Expect = 6e-11
 Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 5/82 (6%)

Query: 84  EVLSLKSNSLTSLPPD--IGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLL 141
           + L LK N + ++           L  L L  N +    +         L  L L +N L
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY--DVK-GQVVFAKLKTLDLSSNKL 203

Query: 142 DALPGFLLSMPQLDTVYRHGNH 163
             +     S   +  +    N 
Sbjct: 204 AFMGPEFQSAAGVTWISLRNNK 225

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 60.2 bits (146), Expect = 6e-10
 Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 7/102 (6%)

Query: 66  LSLSY---TPIGRRIFKCDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASI 121
           L  +    + +     +    + + L +N +T L     G  + ++ L L  N +   + 
Sbjct: 104 LHAANNNISRVSCSRGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161

Query: 122 PFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
                    L HL L  N +  + G  +   +L T+    N 
Sbjct: 162 AELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNK 202

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 59.9 bits (145), Expect = 6e-10
 Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 3/81 (3%)

Query: 84  EVLSLKSNSLTSLPPDIGR-LTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
           ++  +  +SL      + +   N++ L L+ N L        L     L  L L +N+L 
Sbjct: 13  KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLY 71

Query: 143 ALPGFLLSMPQLDTVYRHGNH 163
                  S+  L T+  + N+
Sbjct: 72  ETLDL-ESLSTLRTLDLNNNY 91

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 57.2 bits (138), Expect = 5e-09
 Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 4/93 (4%)

Query: 66  LSLSY---TPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIP 122
           L LS      +G        V  +SL++N L  +   +    NL    L  N     ++ 
Sbjct: 196 LDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLR 255

Query: 123 FTLTFCKNLTHLYL-DNNLLDALPGFLLSMPQL 154
              +  + +  +       L        ++P L
Sbjct: 256 DFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTL 288

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 54.9 bits (132), Expect = 2e-08
 Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 11/89 (12%)

Query: 66  LSLSY---TPIGRRIFK-CDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASI 121
           L LS    + I          +E+L+L SN L      +  L+ LR L L +N +Q    
Sbjct: 39  LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQ---- 93

Query: 122 PFTLTFCKNLTHLYLDNNLLDALPGFLLS 150
              L    ++  L+  NN +  +      
Sbjct: 94  --ELLVGPSIETLHAANNNISRVSCSRGQ 120

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 11/73 (15%), Positives = 27/73 (36%), Gaps = 5/73 (6%)

Query: 92  SLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDAL-PGFLLS 150
           ++  +  +       ++  +TD+ L+  ++        N+  L L  N L  +    L  
Sbjct: 1   AIHEIKQN---GNRYKIEKVTDSSLKQ-ALASLRQSAWNVKELDLSGNPLSQISAADLAP 56

Query: 151 MPQLDTVYRHGNH 163
             +L+ +    N 
Sbjct: 57  FTKLELLNLSSNV 69

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 40.6 bits (95), Expect = 7e-04
 Identities = 19/200 (9%), Positives = 45/200 (22%), Gaps = 25/200 (12%)

Query: 25  RSSFKNKNSTPQTACQRNCSLEVGGICSHIWIPQYFSHAFLLSLSYTPIGRRIFKCDTVE 84
           + + K      +  C        G  C       +      L      +           
Sbjct: 269 KQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHAL----------- 317

Query: 85  VLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDAL 144
            LS + +    L  +       R +       +           +    L      LD  
Sbjct: 318 -LSGQGSETERLECERENQARQREIDALKEQYRTVI-DQVTLRKQAKITLEQKKKALDEQ 375

Query: 145 P-GFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEVLRKQKKLHQPSRL 203
                 +  +LD   +                          +  ++LR   K ++   +
Sbjct: 376 VSNGRRAHAELDGTLQQAVGQ-----------IELQHATEEQSPLQLLRAIVKRYEEMYV 424

Query: 204 QDLAVQSVIASKENFFEPGL 223
           +  +VQ+      + ++   
Sbjct: 425 EQQSVQNNAIRDWDMYQHKE 444

>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB: 2scp_A Length = 174

 Score = 64.0 bits (156), Expect = 2e-12
 Identities = 24/171 (14%), Positives = 42/171 (24%), Gaps = 31/171 (18%)

Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           + +  F     +  G I T  +   +                   K  ++       +M 
Sbjct: 7   KMKTYFNRIDFDKDGAI-TRMDFESMAERFA--------------KESEMKAEHAKVLM- 50

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVD----AFKAA 380
                 D    V D F          +    F+  M    K  +    V       F+A 
Sbjct: 51  ------DSLTGVWDNF-LTAVAGGKGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAV 103

Query: 381 DTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVK 431
           DT +   +              GL        F   +   +  +  E+FV 
Sbjct: 104 DTNEDNNISRDEYGIFFGML--GLDKTMAPASFDAIDTNNDGLLSLEEFVI 152

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 66.4 bits (163), Expect = 3e-12
 Identities = 18/83 (21%), Positives = 39/83 (46%), Gaps = 3/83 (3%)

Query: 77  IFKCDTVEVLSLKSNSLT-SLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLY 135
           I K   +  L +   +++ ++P  + ++  L  L  + N L + ++P +++   NL  + 
Sbjct: 97  IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL-SGTLPPSISSLPNLVGIT 155

Query: 136 LDNNLLD-ALPGFLLSMPQLDTV 157
            D N +  A+P    S  +L T 
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTS 178

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 64.5 bits (158), Expect = 1e-11
 Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 4/92 (4%)

Query: 76  RIFKCDTVEVLSLKSNSLT---SLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLT 132
              +   V  L L   +L     +P  +  L  L  L +         IP  +     L 
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 133 HLYLDNNLLD-ALPGFLLSMPQLDTVYRHGNH 163
           +LY+ +  +  A+P FL  +  L T+    N 
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA 136

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 56.4 bits (137), Expect = 4e-09
 Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 6/77 (7%)

Query: 83  VEVLSLKSNSLT-SLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLL 141
              +++  N LT  +PP    L NL  + L+ N L            KN   ++L  N L
Sbjct: 176 FTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNML-EGDASVLFGSDKNTQKIHLAKNSL 233

Query: 142 D-ALP--GFLLSMPQLD 155
              L   G   ++  LD
Sbjct: 234 AFDLGKVGLSKNLNGLD 250

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 52.5 bits (127), Expect = 8e-08
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 77  IFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL 136
                  + + L  NSL      +G   NL  L L +N +   ++P  LT  K L  L +
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRI-YGTLPQGLTQLKFLHSLNV 275

Query: 137 DNNLL 141
             N L
Sbjct: 276 SFNNL 280

>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus} SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A Length = 108

 Score = 61.9 bits (151), Expect = 3e-12
 Identities = 21/108 (19%), Positives = 39/108 (36%), Gaps = 12/108 (11%)

Query: 328 KAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGT 387
            AEDI    +   +  DT          F +       +     +V D F+  D  +SG 
Sbjct: 7   SAEDI-AAALQECQDPDT-----FEPQKFFQTSGLSKMSAS---QVKDIFRFIDNDQSGY 57

Query: 388 VPAKYLKHVLVN---WGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           +    LK+ L         L+  E   +   A+   + K+  ++F ++
Sbjct: 58  LDGDELKYFLQKFQSDARELTESETKSLMDAADNDGDGKIGADEFQEM 105

>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus} SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A Length = 108

 Score = 44.2 bits (105), Expect = 6e-06
 Identities = 16/92 (17%), Positives = 30/92 (32%), Gaps = 7/92 (7%)

Query: 301 AELKKYLAE--KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLK 358
            ++   L E           F +       +     +V D F+  D  +SG L   +   
Sbjct: 9   EDIAAALQECQDPDTFEPQKFFQTSGLSKMSAS---QVKDIFRFIDNDQSGYLDGDELKY 65

Query: 359 VMHT-HSKAEDIPKEVVDAF-KAADTTKSGTV 388
            +    S A ++ +    +   AAD    G +
Sbjct: 66  FLQKFQSDARELTESETKSLMDAADNDGDGKI 97

>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus} SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A Length = 108

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 14/99 (14%), Positives = 31/99 (31%), Gaps = 35/99 (35%)

Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           + ++ F       +G +   DEL   ++                                
Sbjct: 42  QVKDIFRFIDNDQSGYL-DGDELKYFLQKFQ----------------------------- 71

Query: 325 THSKAEDIPKEVVDAF-KAADTTKSGKLSFPDFLKVMHT 362
             S A ++ +    +   AAD    GK+   +F +++H+
Sbjct: 72  --SDARELTESETKSLMDAADNDGDGKIGADEFQEMVHS 108

>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} SCOP: a.39.1.5 Length = 185

 Score = 64.2 bits (156), Expect = 3e-12
 Identities = 24/177 (13%), Positives = 53/177 (29%), Gaps = 32/177 (18%)

Query: 267 EFRECFFLFA---RNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVM 323
           + +  F  F     +G+I   ++   +M                    G LS  D+  + 
Sbjct: 9   KIKFTFDFFLDMNHDGSI-QDNDFEDMMTRYK------------EVNKGSLSDADYKSMQ 55

Query: 324 HTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDA------- 376
            +      +  E  D    AD  K   +S+ ++L +            ++          
Sbjct: 56  AS------LEDEWRDLKGRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPF 109

Query: 377 -FKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
            FK  D +  G V  +  ++   N+   L   +V  ++               + ++
Sbjct: 110 LFKGMDVSGDGIVDLEEFQNYCKNF--QLQCADVPAVYNVITDGGKVTFDLNRYKEL 164

>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8 Length = 167

 Score = 63.2 bits (154), Expect = 4e-12
 Identities = 29/167 (17%), Positives = 57/167 (34%), Gaps = 39/167 (23%)

Query: 267 EFRECFFLFA-RNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHT 325
                F   A ++G I   DEL   +   G++                    +  ++M  
Sbjct: 3   PLYGYFASVAGQDGQI-DADELQRCLTQSGIAGGYKPFN------------LETCRLM-- 47

Query: 326 HSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKS 385
                      V      D   SG + F +F ++                 F + D+ +S
Sbjct: 48  -----------VSML---DRDMSGTMGFNEFKELWAV-------LNGWRQHFISFDSDRS 86

Query: 386 GTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           GTV  + L+  L   G  L+ + V+ I +    + + K+ ++D++  
Sbjct: 87  GTVDPQELQKALTTMGFRLNPQTVNSIAKR--YSTSGKITFDDYIAC 131

>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8 Length = 167

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 19/100 (19%), Positives = 41/100 (41%), Gaps = 14/100 (14%)

Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE--KGGKLSFPDFLKV 322
            +R+ F  F  +  GT+    EL   + ++G       +          GK++F D++  
Sbjct: 73  GWRQHFISFDSDRSGTVDP-QELQKALTTMGFRLNPQTVNSIAKRYSTSGKITFDDYIAC 131

Query: 323 MHTHSKAEDIPKEVVDAFKAADTTKSGK--LSFPDFLKVM 360
                      + + D+F+  D+ + G    S+ DF++ +
Sbjct: 132 CVK-------LRALTDSFRRRDSAQQGMVNFSYDDFIQCV 164

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 66.8 bits (163), Expect = 4e-12
 Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 9/91 (9%)

Query: 75  RRIFKC--DTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLT 132
           +++  C  +   VL++  + LT+LP  +    ++  L + DN L   S+P        L 
Sbjct: 32  QKMRACLNNGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT--SLPALPP---ELR 84

Query: 133 HLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
            L +  N L +LP     + +L        H
Sbjct: 85  TLEVSGNQLTSLPVLPPGLLELSIFSNPLTH 115

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 65.3 bits (159), Expect = 2e-11
 Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 8/79 (10%)

Query: 84  EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDA 143
           + L +  N LTSLP     L  L    ++ N L   S+P   +    L  L +  N L  
Sbjct: 224 KELIVSGNRLTSLPVLPSELKELM---VSGNRLT--SLPMLPS---GLLSLSVYRNQLTR 275

Query: 144 LPGFLLSMPQLDTVYRHGN 162
           LP  L+ +    TV   GN
Sbjct: 276 LPESLIHLSSETTVNLEGN 294

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 60.7 bits (147), Expect = 4e-10
 Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 8/72 (11%)

Query: 84  EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDA 143
             L +  N LTSLP     L  L +       L              L  L++  N L +
Sbjct: 84  RTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLP--------ALPSGLCKLWIFGNQLTS 135

Query: 144 LPGFLLSMPQLD 155
           LP     + +L 
Sbjct: 136 LPVLPPGLQELS 147

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 60.3 bits (146), Expect = 5e-10
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 8/72 (11%)

Query: 84  EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDA 143
           + LS+  N L SLP     L  L      +N  +  S+P   +    L  L +  N L +
Sbjct: 184 QELSVSDNQLASLPTLPSELYKLWAY---NN--RLTSLPALPS---GLKELIVSGNRLTS 235

Query: 144 LPGFLLSMPQLD 155
           LP     + +L 
Sbjct: 236 LPVLPSELKELM 247

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 59.9 bits (145), Expect = 8e-10
 Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 10/86 (11%)

Query: 66  LSLSYTPIGR---RIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIP 122
           L++  + +      +     +  L +  N+LTSLP     L  L    ++ N L   S+P
Sbjct: 45  LNVGESGLTTLPDCLPA--HITTLVIPDNNLTSLPALPPELRTLE---VSGNQLT--SLP 97

Query: 123 FTLTFCKNLTHLYLDNNLLDALPGFL 148
                   L+        L ALP  L
Sbjct: 98  VLPPGLLELSIFSNPLTHLPALPSGL 123

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 59.5 bits (144), Expect = 1e-09
 Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 4/83 (4%)

Query: 84  EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDA 143
             LS+  N LT LP  +  L++   + L  N L       TL   + +T     +  +  
Sbjct: 264 LSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS----ERTLQALREITSAPGYSGPIIR 319

Query: 144 LPGFLLSMPQLDTVYRHGNHNYF 166
                 S P+          ++ 
Sbjct: 320 FDMAGASAPRETRALHLAAADWL 342

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 8/72 (11%)

Query: 84  EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDA 143
           + LS+  N L SLP     L  L      +N L   S+P   +    L  L + +N L +
Sbjct: 144 QELSVSDNQLASLPALPSELCKLWAY---NNQLT--SLPMLPS---GLQELSVSDNQLAS 195

Query: 144 LPGFLLSMPQLD 155
           LP     + +L 
Sbjct: 196 LPTLPSELYKLW 207

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 54.5 bits (131), Expect = 4e-08
 Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 11/91 (12%)

Query: 65  LLSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFT 124
           + S   T +         +  L +  N LTSLP        L+ L ++DN L   S+P  
Sbjct: 108 IFSNPLTHLPALP---SGLCKLWIFGNQLTSLPVLPP---GLQELSVSDNQLA--SLPAL 159

Query: 125 LTFCKNLTHLYLDNNLLDALPGFLLSMPQLD 155
            +    L  L+  NN L +LP     + +L 
Sbjct: 160 PS---ELCKLWAYNNQLTSLPMLPSGLQELS 187

>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4 Length = 109

 Score = 61.4 bits (150), Expect = 5e-12
 Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 12/108 (11%)

Query: 328 KAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGT 387
           KA+DI  + + AFK   T       +  F  ++    K +    +V + F+  D  +SG 
Sbjct: 7   KADDI-NKAISAFKDPGT-----FDYKRFFHLVGLKGKTDA---QVKEVFEILDKDQSGF 57

Query: 388 VPAKYLKHVLVN---WGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           +  + LK VL      G  L+  E   +    +   + K+  ++F K+
Sbjct: 58  IEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKIGADEFAKM 105

>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4 Length = 109

 Score = 61.1 bits (149), Expect = 7e-12
 Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 8/101 (7%)

Query: 335 EVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLK 394
           +V  A KA +   +   ++  F   +   +K+ D   ++  AF   D  KSG +    LK
Sbjct: 11  DVAAALKACE--AADSFNYKAFFAKVGLTAKSAD---DIKKAFFVIDQDKSGFIEEDELK 65

Query: 395 HVLVN---WGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
             L         L+  E     +  +   +  +  +++  +
Sbjct: 66  LFLQVFSAGARALTDAETKAFLKAGDSDGDGAIGVDEWAAL 106

>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4 Length = 109

 Score = 49.6 bits (119), Expect = 7e-08
 Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 7/100 (7%)

Query: 293 SLGMSPTIAELKKYLAE--KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGK 350
           +       A++   L         ++  F   +   +K+ D   ++  AF   D  KSG 
Sbjct: 2   AFSGILADADVAAALKACEAADSFNYKAFFAKVGLTAKSAD---DIKKAFFVIDQDKSGF 58

Query: 351 LSFPDFLKVMHTHSK-AEDIPKEVVDAF-KAADTTKSGTV 388
           +   +    +   S  A  +      AF KA D+   G +
Sbjct: 59  IEEDELKLFLQVFSAGARALTDAETKAFLKAGDSDGDGAI 98

>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens} Length = 202

 Score = 63.2 bits (154), Expect = 8e-12
 Identities = 30/190 (15%), Positives = 59/190 (31%), Gaps = 61/190 (32%)

Query: 266 LEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVM 323
           L     F    RN  G + +  +L   + +L ++P    +                    
Sbjct: 29  LRLHHRFRALDRNKKGYL-SRMDLQQ-IGALAVNPLGDRI-------------------- 66

Query: 324 HTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVD-------- 375
                            ++     S ++ FP F++V+      ED   E  D        
Sbjct: 67  ----------------IESFFPDGSQRVDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLN 110

Query: 376 --------AFKAADTTKSGTVPAKYLKHVLVN-WGEGLSSKE----VDQIFREANVTMNS 422
                   AF+  D  + G +    +  VL    G  ++ ++     D+  +EA+   + 
Sbjct: 111 SRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDG 170

Query: 423 KVRYEDFVKI 432
            V + +F K 
Sbjct: 171 AVSFVEFTKS 180

>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} PDB: 2kqy_A Length = 109

 Score = 60.7 bits (148), Expect = 8e-12
 Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 12/108 (11%)

Query: 328 KAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGT 387
            A+DI +  + + +AAD+      ++  F   +   SK  D   ++   F   D  KSG 
Sbjct: 8   SAKDI-ESALSSCQAADS-----FNYKSFFSTVGLSSKTPD---QIKKVFGILDQDKSGF 58

Query: 388 VPAKYLKHVLVNWGEG---LSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           +  + L+  L N+      L+S E        +   + K+  E+F  +
Sbjct: 59  IEEEELQLFLKNFSSSARVLTSAETKAFLAAGDTDGDGKIGVEEFQSL 106

>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} PDB: 2kqy_A Length = 109

 Score = 46.5 bits (111), Expect = 9e-07
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 7/92 (7%)

Query: 301 AELKKYLAE--KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLK 358
            +++  L+        ++  F   +   SK  D   ++   F   D  KSG +   +   
Sbjct: 10  KDIESALSSCQAADSFNYKSFFSTVGLSSKTPD---QIKKVFGILDQDKSGFIEEEELQL 66

Query: 359 VMHTHS-KAEDIPKEVVDAF-KAADTTKSGTV 388
            +   S  A  +      AF  A DT   G +
Sbjct: 67  FLKNFSSSARVLTSAETKAFLAAGDTDGDGKI 98

>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal binding protein; 2.10A {Mus musculus} PDB: 2g2b_A Length = 147

 Score = 61.9 bits (150), Expect = 9e-12
 Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 10/94 (10%)

Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFL 320
            F+  +  F  N  G I  +  L  ++  LG+  T  ELK+ + E         S+ DFL
Sbjct: 49  AFKVKYMEFDLNGNGDI-DIMSLKRMLEKLGVPKTHLELKRLIREVSSGSEETFSYSDFL 107

Query: 321 KVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFP 354
           ++M            ++  ++  +         P
Sbjct: 108 RMM---LGKRSAILRMILMYEEKNKEHKRPTGPP 138

>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal binding protein; 2.10A {Mus musculus} PDB: 2g2b_A Length = 147

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 14/89 (15%), Positives = 29/89 (32%), Gaps = 4/89 (4%)

Query: 344 DTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEG 403
           +      L  P +              +     +   D   +G +    LK +L   G  
Sbjct: 25  EGINKQFLDDPKYSNDEDL----PSKLEAFKVKYMEFDLNGNGDIDIMSLKRMLEKLGVP 80

Query: 404 LSSKEVDQIFREANVTMNSKVRYEDFVKI 432
            +  E+ ++ RE +        Y DF+++
Sbjct: 81  KTHLELKRLIREVSSGSEETFSYSDFLRM 109

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 65.0 bits (159), Expect = 9e-12
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 84  EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP-FTLTFCKNLTHLYLDNNLL 141
             L L  N +T +       L NL  L L+ N +   ++   +L    +L  L+L+NN L
Sbjct: 195 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS--AVDNGSLANTPHLRELHLNNNKL 252

Query: 142 DALPGFLLSMPQLDTVYRHGNH 163
             +PG L     +  VY H N+
Sbjct: 253 VKVPGGLADHKYIQVVYLHNNN 274

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 6/83 (7%)

Query: 84  EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTF--CKNLTHLYLDNNL 140
           + L +  N +T +   +   L  + V+ L  N L+++ I     F   K L+++ + +  
Sbjct: 124 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE-NGAFQGMKKLSYIRIADTN 182

Query: 141 LDALPGFLLSMPQLDTVYRHGNH 163
           +  +P  L   P L  ++  GN 
Sbjct: 183 ITTIPQGLP--PSLTELHLDGNK 203

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 4/83 (4%)

Query: 82  TVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNL 140
              +L L++N +T +       L NL  L L +N +   S P        L  LYL  N 
Sbjct: 53  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS-PGAFAPLVKLERLYLSKNQ 111

Query: 141 LDALPGFLLSMPQLDTVYRHGNH 163
           L  LP  +     L  +  H N 
Sbjct: 112 LKELPEKMP--KTLQELRVHENE 132

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 6/82 (7%)

Query: 84  EVLSLKSNSLTSLPPDIGR-LTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
             L L +N ++ + P     L  L  L L+ N L+   +P  +   K L  L +  N + 
Sbjct: 79  HTLILINNKISKISPGAFAPLVKLERLYLSKNQLK--ELPEKM-P-KTLQELRVHENEIT 134

Query: 143 ALPGFLLS-MPQLDTVYRHGNH 163
            +   + + + Q+  V    N 
Sbjct: 135 KVRKSVFNGLNQMIVVELGTNP 156

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 17/109 (15%), Positives = 35/109 (32%), Gaps = 12/109 (11%)

Query: 66  LSLSY---TPIGRRIFK-CDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQN--- 118
           L LS+   + +          +  L L +N L  +P  +     ++V+ L +N +     
Sbjct: 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGS 280

Query: 119 --ASIPFTLTFCKNLTHLYLDNNLLDAL---PGFLLSMPQLDTVYRHGN 162
                P   T   + + + L +N +      P     +     V     
Sbjct: 281 NDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 65.7 bits (161), Expect = 1e-11
 Identities = 32/119 (26%), Positives = 46/119 (38%), Gaps = 12/119 (10%)

Query: 56  IPQYFSHAFLLSLSY--------T-PIGRRIFKCDTVEVLSLKSNSLT-SLPPDIGRLTN 105
           I          +L          T  I   +  C  +  L L  N L+ ++P  +G L+ 
Sbjct: 384 ILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK 443

Query: 106 LRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD-ALPGFLLSMPQLDTVYRHGNH 163
           LR L L  N L+   IP  L + K L  L LD N L   +P  L +   L+ +    N 
Sbjct: 444 LRDLKLWLNMLE-GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 501

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 64.2 bits (157), Expect = 4e-11
 Identities = 22/116 (18%), Positives = 42/116 (36%), Gaps = 13/116 (11%)

Query: 42  NCSLEVGGICSHIWIPQYFSHAFLLSLSYT------PIGRRIFKCDTVEVLSLKSNSLTS 95
             S+  G       +         L++S         + R    C  +E L + SN+ ++
Sbjct: 160 ANSIS-GANVVGWVLSDGCGELKHLAISGNKISGDVDVSR----CVNLEFLDVSSNNFST 214

Query: 96  LPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD-ALPGFLLS 150
             P +G  + L+ L ++ N L        ++ C  L  L + +N     +P   L 
Sbjct: 215 GIPFLGDCSALQHLDISGNKLSG-DFSRAISTCTELKLLNISSNQFVGPIPPLPLK 269

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 62.2 bits (152), Expect = 2e-10
 Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 10/117 (8%)

Query: 56  IPQYFSHA---FLLSLSYT----PIGRRIFKCDTVEVLSLKSNSLT-SLPPDIGRLTNLR 107
           IP   S+      L LS+      I   +     +  L L  N L   +P ++  +  L 
Sbjct: 410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 469

Query: 108 VLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLL-DALPGFLLSMPQLDTVYRHGNH 163
            L L  N L    IP  L+ C NL  + L NN L   +P ++  +  L  +    N 
Sbjct: 470 TLILDFNDLT-GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.8 bits (151), Expect = 2e-10
 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 6/90 (6%)

Query: 77  IFKCDTVEVLSLKSNSLT-SLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLY 135
           +  C  ++ L +  N L+      I   T L++L ++ N      IP      K+L +L 
Sbjct: 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF-VGPIPPLP--LKSLQYLS 275

Query: 136 LDNNLLD-ALPGFLL-SMPQLDTVYRHGNH 163
           L  N     +P FL  +   L  +   GNH
Sbjct: 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNH 305

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.5 bits (150), Expect = 2e-10
 Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 23/115 (20%)

Query: 77  IFKCDTVEVLSLKSNSLT-SLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLY 135
           +  C  +  +SL +N LT  +P  IGRL NL +L L++N   + +IP  L  C++L  L 
Sbjct: 486 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF-SGNIPAELGDCRSLIWLD 544

Query: 136 LDNNLL---------------------DALPGFLLSMPQLDTVYRHGNHNYFKST 169
           L+ NL                           ++ +       +  GN   F+  
Sbjct: 545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 599

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 58.0 bits (141), Expect = 3e-09
 Identities = 18/102 (17%), Positives = 37/102 (36%), Gaps = 5/102 (4%)

Query: 66  LSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTL 125
           L++ ++ +   +     +E L L ++ +           +L  L L+ N L    +    
Sbjct: 62  LNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSG-PVTTLT 120

Query: 126 TF--CKNLTHLYLDNNLLDAL--PGFLLSMPQLDTVYRHGNH 163
           +   C  L  L + +N LD        L +  L+ +    N 
Sbjct: 121 SLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 162

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 57.6 bits (140), Expect = 4e-09
 Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 5/89 (5%)

Query: 79  KCDTVEVLSLKSNSLT-SLPPDIGRLTNLRVLCLTDNCLQNASIPF-TLTFCKNLTHLYL 136
            CDT+  L L  N    ++PP  G  + L  L L+ N      +P  TL   + L  L L
Sbjct: 292 ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG-ELPMDTLLKMRGLKVLDL 350

Query: 137 DNNLL-DALPGFLLSM-PQLDTVYRHGNH 163
             N     LP  L ++   L T+    N+
Sbjct: 351 SFNEFSGELPESLTNLSASLLTLDLSSNN 379

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 55.3 bits (134), Expect = 3e-08
 Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 11/108 (10%)

Query: 66  LSLSYT----PIGRRIFKCDTVEVLSLKSNSLT-SLPPD-IGRLTNLRVLCLTDNCLQNA 119
           L LS       +      C  +E L+L SN+ +  LP D + ++  L+VL L+ N     
Sbjct: 299 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG- 357

Query: 120 SIPFTLTFCK-NLTHLYLDNNLLD-ALPGFL--LSMPQLDTVYRHGNH 163
            +P +LT    +L  L L +N     +   L       L  +Y   N 
Sbjct: 358 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 405

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.1 bits (123), Expect = 5e-07
 Identities = 14/110 (12%), Positives = 31/110 (28%), Gaps = 11/110 (10%)

Query: 42  NCSLEVGGICSHIWIPQYFSHAFLLSLSYT---------PIGRRIFKCDTVEVLSLKSNS 92
             S ++           Y  +  +    +              ++ +  T    ++ S  
Sbjct: 560 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRV 619

Query: 93  LT-SLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLL 141
                 P      ++  L ++ N L    IP  +     L  L L +N +
Sbjct: 620 YGGHTSPTFDNNGSMMFLDMSYNMLSG-YIPKEIGSMPYLFILNLGHNDI 668

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 50.3 bits (121), Expect = 9e-07
 Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 8/89 (8%)

Query: 60  FSHAFLLSLSYTPIGRRI---FKCDTVEVLSLKSNSLT-SLPPD--IGRLTNLRVLCLTD 113
            +    L LS + I   +       ++  L L  NSL+  +     +G  + L+ L ++ 
Sbjct: 76  LTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSS 135

Query: 114 NCLQNASIPFTLTF-CKNLTHLYLDNNLL 141
           N L +     +      +L  L L  N +
Sbjct: 136 NTL-DFPGKVSGGLKLNSLEVLDLSANSI 163

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 47.2 bits (113), Expect = 8e-06
 Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 4/110 (3%)

Query: 48  GGICSHIWIPQYFSHAFLLSLSYT-PIGRRIFKCDTVEVLSLKSNSLT-SLPPDIGRLTN 105
           G     +      +   + S  Y            ++  L +  N L+  +P +IG +  
Sbjct: 598 GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY 657

Query: 106 LRVLCLTDNCLQNASIPFTLTFCKNLTHLYL-DNNLLDALPGFLLSMPQL 154
           L +L L  N +   SIP  +   + L  L L  N L   +P  + ++  L
Sbjct: 658 LFILNLGHNDISG-SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 706

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.5 bits (106), Expect = 6e-05
 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 2/66 (3%)

Query: 77  IFKCDTVEVLSLKSNSLT-SLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLY 135
           I     + +L+L  N ++ S+P ++G L  L +L L+ N L +  IP  ++    LT + 
Sbjct: 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL-DGRIPQAMSALTMLTEID 710

Query: 136 LDNNLL 141
           L NN L
Sbjct: 711 LSNNNL 716

>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated, SEN membrane targeting, EF-hand, cell projection, cilium; 2.00A {Trypanosoma cruzi} Length = 219

 Score = 63.0 bits (153), Expect = 1e-11
 Identities = 25/173 (14%), Positives = 49/173 (28%), Gaps = 30/173 (17%)

Query: 267 EFRECFFLFARN--GTIKTLDELS-VIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVM 323
              E F  F +N  G +   DE+    +  L +    + ++                   
Sbjct: 49  RRIELFKKFDKNETGKL-CYDEVYSGCLEVLKLDEFTSRVRDIT---------------- 91

Query: 324 HTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTT 383
                              +     G   F +FL+         D   E+   F   D +
Sbjct: 92  --------KRAFDKSRTLGSKLENKGSEDFVEFLEFRLMLCYIYDF-FELTVMFDEIDAS 142

Query: 384 KSGTVPAKYLKHVLVNWG-EGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
            +  V  +  K  +      G   ++   +F+E +      V +++F   A A
Sbjct: 143 GNMLVDEEEFKRAVPKLEAWGAKVEDPAALFKELDKNGTGSVTFDEFAAWASA 195

>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S 3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A Length = 173

 Score = 62.1 bits (151), Expect = 1e-11
 Identities = 27/167 (16%), Positives = 53/167 (31%), Gaps = 35/167 (20%)

Query: 267 EFRECFFLFA-RNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHT 325
           +FR  F   A  +  + +  EL  I+  +       +   +                   
Sbjct: 5   QFRRLFAQLAGDDMEV-SATELMNILNKVVTRHPDLKTDGF------------------- 44

Query: 326 HSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKS 385
                D  + +V      D+  +GKL F +F  + +         K+    +K  D  +S
Sbjct: 45  ---GIDTCRSMVAVM---DSDTTGKLGFEEFKYLWNN-------IKKWQAIYKQFDVDRS 91

Query: 386 GTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           GT+ +  L       G  L+      I R         + +++F+  
Sbjct: 92  GTIGSSELPGAFEAAGFHLNEHLYSMIIR-RYSDEGGNMDFDNFISC 137

>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S 3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A Length = 173

 Score = 42.8 bits (101), Expect = 5e-05
 Identities = 18/101 (17%), Positives = 47/101 (46%), Gaps = 17/101 (16%)

Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGM--SPTIAEL--KKYLAEKGGKLSFPDFL 320
           +++  +  F  +  GTI +  EL     + G   +  +  +  ++Y +++GG + F +F+
Sbjct: 78  KWQAIYKQFDVDRSGTIGS-SELPGAFEAAGFHLNEHLYSMIIRRY-SDEGGNMDFDNFI 135

Query: 321 KVMHTHSKAEDIPKEVVDAFKAADTTKSG--KLSFPDFLKV 359
             +            +  AFK+ D   +G  +++  ++L++
Sbjct: 136 SCLVRL-------DAMFRAFKSLDKDGTGQIQVNIQEWLQL 169

>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium binding protein; NMR {Gallus gallus} PDB: 2kyf_A Length = 108

 Score = 60.0 bits (146), Expect = 2e-11
 Identities = 17/101 (16%), Positives = 39/101 (38%), Gaps = 8/101 (7%)

Query: 335 EVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLK 394
           ++  A +          S   F ++     K+     ++ + F+  D  +SG +    LK
Sbjct: 10  DIAAALRDCQ--APDSFSPKKFFQISGMSKKSSS---QLKEIFRILDNDQSGFIEEDELK 64

Query: 395 HVLVNW---GEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           + L  +      L++ E       A+   + K+  E+F ++
Sbjct: 65  YFLQRFESGARVLTASETKTFLAAADHDGDGKIGAEEFQEM 105

>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium binding protein; NMR {Gallus gallus} PDB: 2kyf_A Length = 108

 Score = 44.2 bits (105), Expect = 5e-06
 Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 7/100 (7%)

Query: 293 SLGMSPTIAELKKYLAE--KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGK 350
           SL    + +++   L +       S   F ++     K+     ++ + F+  D  +SG 
Sbjct: 1   SLTDILSPSDIAAALRDCQAPDSFSPKKFFQISGMSKKSSS---QLKEIFRILDNDQSGF 57

Query: 351 LSFPDFLKVMHT-HSKAEDIPKEVVDAF-KAADTTKSGTV 388
           +   +    +    S A  +       F  AAD    G +
Sbjct: 58  IEEDELKYFLQRFESGARVLTASETKTFLAAADHDGDGKI 97

>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium binding protein; NMR {Gallus gallus} PDB: 2kyf_A Length = 108

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 15/98 (15%), Positives = 28/98 (28%), Gaps = 33/98 (33%)

Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           + +E F +     +G I   DEL   ++                     L+         
Sbjct: 42  QLKEIFRILDNDQSGFI-EEDELKYFLQRFES-------------GARVLT--------- 78

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHT 362
                     E      AAD    GK+   +F +++ +
Sbjct: 79  --------ASETKTFLAAADHDGDGKIGAEEFQEMVQS 108

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 65.0 bits (158), Expect = 2e-11
 Identities = 21/130 (16%), Positives = 39/130 (30%), Gaps = 7/130 (5%)

Query: 84  EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQN--ASIPFTLTFCKNLTHLYLDNNLL 141
           E L + +N L SLP    R  +     +   C +N    IP  +        + L++N L
Sbjct: 183 EALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPL 242

Query: 142 DALPGFLLSMPQLDTVYRHGN-----HNYFKSTFMWYHSDIHARIRSTSTRDEVLRKQKK 196
            +     LS       Y          +  ++T     +D        + + +V +    
Sbjct: 243 SSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHA 302

Query: 197 LHQPSRLQDL 206
                     
Sbjct: 303 FEHEEHANTF 312

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 61.9 bits (150), Expect = 1e-10
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 7/72 (9%)

Query: 84  EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDA 143
             L L   +L+SLP ++     + VL +T N L   S+P       +L +L   +N L  
Sbjct: 62  SELQLNRLNLSSLPDNLP--PQITVLEITQNALI--SLPELPA---SLEYLDACDNRLST 114

Query: 144 LPGFLLSMPQLD 155
           LP    S+  LD
Sbjct: 115 LPELPASLKHLD 126

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 59.6 bits (144), Expect = 9e-10
 Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 23/100 (23%)

Query: 84  EVLSLKSNSLTSLPPDIGRLT-----------------NLRVLCLTDNCLQNASIPFTLT 126
           E ++  +N LT LP     L                  +L  L ++ N L+  S+P    
Sbjct: 143 EYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPELPESLEALDVSTNLLE--SLPAVPV 200

Query: 127 FCKNLT----HLYLDNNLLDALPGFLLSMPQLDTVYRHGN 162
              +            N +  +P  +LS+    T+    N
Sbjct: 201 RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDN 240

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 58.4 bits (141), Expect = 2e-09
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 8/73 (10%)

Query: 83  VEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
           + VL +  N+L SLP       +L  L   DN L   ++P       +L HL +DNN L 
Sbjct: 82  ITVLEITQNALISLPELPA---SLEYLDACDNRLS--TLPELPA---SLKHLDVDNNQLT 133

Query: 143 ALPGFLLSMPQLD 155
            LP     +  ++
Sbjct: 134 MLPELPALLEYIN 146

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 56.5 bits (136), Expect = 9e-09
 Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 5/71 (7%)

Query: 85  VLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDAL 144
           +     N   SL  +   +     L L    L   S+P  L     +T L +  N L +L
Sbjct: 41  LPGENRNEAVSLLKEC-LINQFSELQLNRLNLS--SLPDNL--PPQITVLEITQNALISL 95

Query: 145 PGFLLSMPQLD 155
           P    S+  LD
Sbjct: 96  PELPASLEYLD 106

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 56.1 bits (135), Expect = 1e-08
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 8/70 (11%)

Query: 86  LSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALP 145
           L + +N LT LP        L  +   +N L    +P   T   +L  L + NN L  LP
Sbjct: 125 LDVDNNQLTMLPELPA---LLEYINADNNQLT--MLPELPT---SLEVLSVRNNQLTFLP 176

Query: 146 GFLLSMPQLD 155
               S+  LD
Sbjct: 177 ELPESLEALD 186

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 13/79 (16%), Positives = 22/79 (27%), Gaps = 3/79 (3%)

Query: 86  LSLKSNSLTSLPPDIGR-LTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDAL 144
            +   N+++    D            L       A            + L L+   L +L
Sbjct: 15  QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSL 74

Query: 145 PGFLLSMPQLDTVYRHGNH 163
           P  L   PQ+  +    N 
Sbjct: 75  PDNLP--PQITVLEITQNA 91

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 3/80 (3%)

Query: 84  EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
             + L  N L  +      ++  L  L +++N L   ++         L  L L +N L 
Sbjct: 251 VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV--ALNLYGQPIPTLKVLDLSHNHLL 308

Query: 143 ALPGFLLSMPQLDTVYRHGN 162
            +        +L+ +Y   N
Sbjct: 309 HVERNQPQFDRLENLYLDHN 328

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 63.1 bits (154), Expect = 5e-11
 Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 7/95 (7%)

Query: 66  LSLSY---TPIGRRIFK-CDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASI 121
           + LSY     I    F     +E L + +N L +L      +  L+VL L+ N L    +
Sbjct: 253 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL--HV 310

Query: 122 PFTLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLD 155
                    L +LYLD+N +  L      ++  L 
Sbjct: 311 ERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLT 345

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 15/83 (18%), Positives = 36/83 (43%), Gaps = 5/83 (6%)

Query: 84  EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP-FTLTFCKNLTHLYLDNNLL 141
           ++++ K++++  LP  +      + +L L D  ++   I  +   +   +  LY+  N +
Sbjct: 48  KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE--EIDTYAFAYAHTIQKLYMGFNAI 105

Query: 142 DALP-GFLLSMPQLDTVYRHGNH 163
             LP     ++P L  +    N 
Sbjct: 106 RYLPPHVFQNVPLLTVLVLERND 128

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 56.6 bits (137), Expect = 5e-09
 Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 9/102 (8%)

Query: 66  LSLSY---TPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIP 122
           L  S+     +   +     + +L L+ N+LT     +     L  + L+ N L+   I 
Sbjct: 210 LDASHNSINVVRGPVNV--ELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELE--KIM 264

Query: 123 F-TLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
           +      + L  LY+ NN L AL  +   +P L  +    NH
Sbjct: 265 YHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH 306

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 56.6 bits (137), Expect = 6e-09
 Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 5/83 (6%)

Query: 84  EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPF-TLTFCKNLTHLYLDNNLL 141
           E+L+L    +  +          ++ L +  N +    +P         LT L L+ N L
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVLERNDL 129

Query: 142 DALPGFLLS-MPQLDTVYRHGNH 163
            +LP  +    P+L T+    N+
Sbjct: 130 SSLPRGIFHNTPKLTTLSMSNNN 152

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 9/105 (8%)

Query: 66  LSLSY---TPIGRRIFK-CDTVEVLSLKSNSLTSLPPDIGR-LTNLRVLCLTDNCLQNAS 120
           L+L+      I    F    T++ L +  N++  LPP + + +  L VL L  N L   S
Sbjct: 74  LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS--S 131

Query: 121 IP-FTLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGNH 163
           +P         LT L + NN L+ +      +   L  +    N 
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 176

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 53.5 bits (129), Expect = 6e-08
 Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 7/80 (8%)

Query: 66  LSLSY---TPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIP 122
           L +S      +        T++VL L  N L  +  +  +   L  L L  N +   ++ 
Sbjct: 277 LYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV--TLK 334

Query: 123 FTLTFCKNLTHLYLDNNLLD 142
            + T    L +L L +N  D
Sbjct: 335 LS-TH-HTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 21/102 (20%), Positives = 40/102 (39%), Gaps = 14/102 (13%)

Query: 66  LSLSY---TPIGRRIFK-CDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASI 121
           LS+S      I    F+   +++ L L SN LT +      + +L    ++ N L     
Sbjct: 146 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL--SLIPSLFHANVSYNLLS---- 199

Query: 122 PFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
             TL     +  L   +N ++ + G +    +L  +    N+
Sbjct: 200 --TLAIPIAVEELDASHNSINVVRGPVNV--ELTILKLQHNN 237

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 9/86 (10%), Positives = 28/86 (32%), Gaps = 10/86 (11%)

Query: 86  LSLKSNSLTSLPPDIG------RLTNLRVLCLTDNCLQNASIP-FTLTFCKNLTHLYLDN 138
                  +     D+        L N +++   ++ ++   +P   L   + +  L L++
Sbjct: 21  CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR--KLPAALLDSFRQVELLNLND 78

Query: 139 NLLDALP-GFLLSMPQLDTVYRHGNH 163
             ++ +          +  +Y   N 
Sbjct: 79  LQIEEIDTYAFAYAHTIQKLYMGFNA 104

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 64.4 bits (156), Expect = 3e-11
 Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 8/105 (7%)

Query: 58  QYFSHAFLLSLSY---TPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDN 114
           +       L LS+     +   +     +EVL    N+L ++   +  L  L+ L L +N
Sbjct: 460 EQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG-VANLPRLQELLLCNN 518

Query: 115 CLQNASIPFTLTFCKNLTHLYLDNNLLDALPGF----LLSMPQLD 155
            LQ ++    L  C  L  L L  N L    G        +P + 
Sbjct: 519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 563

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 64.4 bits (156), Expect = 3e-11
 Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 4/108 (3%)

Query: 56  IPQYFSHAFLLSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNC 115
             +      L S           +   V VL L    LT L   + +L  +  L L+ N 
Sbjct: 416 PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR 474

Query: 116 LQNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
           L+  ++P  L   + L  L   +N L+ + G + ++P+L  +    N 
Sbjct: 475 LR--ALPPALAALRCLEVLQASDNALENVDG-VANLPRLQELLLCNNR 519

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 62.9 bits (152), Expect = 8e-11
 Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 7/117 (5%)

Query: 50  ICSHIWIPQYFSHAFLLSLSYTPIGR--RIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLR 107
           +  +  +   ++   +L L++  +     + +   V  L L  N L +LPP +  L  L 
Sbjct: 430 LLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLE 489

Query: 108 VLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGF--LLSMPQLDTVYRHGN 162
           VL  +DN L+  ++   +     L  L L NN L        L+S P+L  +   GN
Sbjct: 490 VLQASDNALE--NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 64.3 bits (157), Expect = 3e-11
 Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 9/116 (7%)

Query: 65  LLSLSYTPIGRR------IFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQN 118
            L LS   +  +       F   +++ L L  N + ++  +   L  L  L    + L+ 
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ 410

Query: 119 ASIPFTLTFCKNLTHLYLDNNLLDAL-PGFLLSMPQLDTVYRHGNHNYFKSTFMWY 173
            S        +NL +L + +        G    +  L+ +   GN   F+  F+  
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS--FQENFLPD 464

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.7 bits (153), Expect = 9e-11
 Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 3/82 (3%)

Query: 84  EVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
           +VL L    + ++       L++L  L LT N +Q+       +   +L  L      L 
Sbjct: 55  QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLA 113

Query: 143 AL-PGFLLSMPQLDTVYRHGNH 163
           +L    +  +  L  +    N 
Sbjct: 114 SLENFPIGHLKTLKELNVAHNL 135

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.7 bits (153), Expect = 1e-10
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 4/89 (4%)

Query: 84  EVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
           + L     +L SL    IG L  L+ L +  N +Q+  +P   +   NL HL L +N + 
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162

Query: 143 AL-PGFLLSMPQLDTVYRHGN--HNYFKS 168
           ++    L  + Q+  +    +   N    
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 5/107 (4%)

Query: 59  YFSHAFLLSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQ 117
            F H+ L  +S   +   +     +  L +               L++L VL +  N  Q
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRN---LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 118 NASIPFTLTFCKNLTHLYLDNNLLDALPGFLLS-MPQLDTVYRHGNH 163
              +P   T  +NLT L L    L+ L     + +  L  +    N+
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 505

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.7 bits (140), Expect = 4e-09
 Identities = 19/106 (17%), Positives = 31/106 (29%), Gaps = 9/106 (8%)

Query: 66  LSLSY----TPIGRRIFK-CDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNA 119
           L ++           IF     +  L L    L  L P     L++L+VL ++ N    +
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF-FS 508

Query: 120 SIPFTLTFCKNLTHLYLDNNLLDALPG--FLLSMPQLDTVYRHGNH 163
              F      +L  L    N +              L  +    N 
Sbjct: 509 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 554

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.3 bits (139), Expect = 4e-09
 Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 2/65 (3%)

Query: 82  TVEVLSLKSNSLTSLPP-DIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNL 140
           + + L L  N L  L          L+VL L+   +Q            +L+ L L  N 
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNP 87

Query: 141 LDALP 145
           + +L 
Sbjct: 88  IQSLA 92

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.9 bits (130), Expect = 6e-08
 Identities = 24/105 (22%), Positives = 38/105 (36%), Gaps = 8/105 (7%)

Query: 66  LSLSY----TPIGRRIFKCDTVEVLSLKSNSLT-SLPPDI-GRLTNLRVLCLTDNCLQNA 119
           L +S+               ++EVL +  NS   +  PDI   L NL  L L+   L+  
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ- 484

Query: 120 SIPFTLTFCKNLTHLYLDNNLLDAL-PGFLLSMPQLDTVYRHGNH 163
             P       +L  L + +N   +L       +  L  +    NH
Sbjct: 485 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 529

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 5/82 (6%)

Query: 66  LSLSY----TPIGRRIFKCDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNAS 120
           L LS                +++VL++  N+  SL       L +L+VL  + N +  + 
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 534

Query: 121 IPFTLTFCKNLTHLYLDNNLLD 142
                 F  +L  L L  N   
Sbjct: 535 KQELQHFPSSLAFLNLTQNDFA 556

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 18/103 (17%), Positives = 33/103 (32%), Gaps = 5/103 (4%)

Query: 67  SLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPP-DIGRLTNLRVLCLTDNCLQN--ASIPF 123
            +    +         +E L L SN + S+   D+  L  + +L L+ +   N    I  
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

Query: 124 TLTFCKNLTHLYLDNNLL--DALPGFLLSMPQLDTVYRHGNHN 164
                  L  L L NN    + +   +  +  L+         
Sbjct: 195 GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.3 bits (113), Expect = 7e-06
 Identities = 16/86 (18%), Positives = 26/86 (30%), Gaps = 11/86 (12%)

Query: 86  LSLKSNSLTSL-------PPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDN 138
           L+++   L  L             LTN+    L    +         ++     HL L N
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI---ERVKDFSYNFGWQHLELVN 313

Query: 139 NLLDALPG-FLLSMPQLDTVYRHGNH 163
                 P   L S+ +L      G +
Sbjct: 314 CKFGQFPTLKLKSLKRLTFTSNKGGN 339

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 14/80 (17%), Positives = 29/80 (36%), Gaps = 4/80 (5%)

Query: 85  VLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDAL 144
                  +   +P ++    + + L L+ N L++    ++      L  L L    +  +
Sbjct: 11  TYQCMELNFYKIPDNL--PFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 145 -PGFLLSMPQLDTVYRHGNH 163
             G   S+  L T+   GN 
Sbjct: 68  EDGAYQSLSHLSTLILTGNP 87

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 18/103 (17%), Positives = 29/103 (28%), Gaps = 6/103 (5%)

Query: 66  LSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTL 125
           L      I         V   SL S ++  +          + L L +         F  
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD-FSYNFGWQHLELVNCKFGQ----FPT 321

Query: 126 TFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNHNYFKS 168
              K+L  L   +N         + +P L+ +    N   FK 
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKG 363

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 14/86 (16%), Positives = 22/86 (25%), Gaps = 7/86 (8%)

Query: 86  LSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLD-------N 138
           L L  N +  + P   +   L  L L +N      +   +     L    L         
Sbjct: 182 LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241

Query: 139 NLLDALPGFLLSMPQLDTVYRHGNHN 164
           NL       L  +  L        + 
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAYL 267

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 18/94 (19%), Positives = 24/94 (25%), Gaps = 10/94 (10%)

Query: 66  LSLSYTPIGR--RIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPF 123
            SL    I R          + L L +      P     L +L+ L  T N        F
Sbjct: 287 FSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLK--LKSLKRLTFTSN---KGGNAF 341

Query: 124 TLTFCKNLTHLYLDNN---LLDALPGFLLSMPQL 154
           +     +L  L L  N                 L
Sbjct: 342 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 64.3 bits (157), Expect = 3e-11
 Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 3/82 (3%)

Query: 84  EVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
             L L    +  +  D       L  L LT N L        L+  K L HL+     + 
Sbjct: 60  TFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF-MAETALSGPKALKHLFFIQTGIS 118

Query: 143 AL-PGFLLSMPQLDTVYRHGNH 163
           ++    L +   L+++Y   NH
Sbjct: 119 SIDFIPLHNQKTLESLYLGSNH 140

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.8 bits (148), Expect = 4e-10
 Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 7/105 (6%)

Query: 66  LSLSY---TPIGRRIFKCDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASI 121
           L L+    + +   +    T++ L L +N   +L         +L  L +  N  +    
Sbjct: 283 LDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG 342

Query: 122 PFTLTFCKNLTHLYLDNNLL---DALPGFLLSMPQLDTVYRHGNH 163
              L   +NL  L L ++ +   D     L ++  L ++    N 
Sbjct: 343 TGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE 387

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.4 bits (147), Expect = 5e-10
 Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 7/108 (6%)

Query: 65  LLSLSYTPIGRRIF---KCDTVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNAS 120
              +    I   +F      +VE ++L+ +   ++  +     + L+ L LT   L    
Sbjct: 235 FEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS--E 292

Query: 121 IPFTLTFCKNLTHLYLDNNLLDALPGFLLS-MPQLDTVYRHGNHNYFK 167
           +P  L     L  L L  N  + L     S  P L  +   GN    +
Sbjct: 293 LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 7/104 (6%)

Query: 66  LSLSY---TPIGRRIFKC-DTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASI 121
           ++L       I    F C   ++ L L +  L+ LP  +  L+ L+ L L+ N  +N   
Sbjct: 259 INLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFEN-LC 317

Query: 122 PFTLTFCKNLTHLYLDNN--LLDALPGFLLSMPQLDTVYRHGNH 163
             + +   +LTHL +  N   L+   G L ++  L  +    + 
Sbjct: 318 QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD 361

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.6 bits (137), Expect = 9e-09
 Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 3/82 (3%)

Query: 84  EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
           + L L +N L  +          L+ L      + +      L   K L  LYL +N + 
Sbjct: 84  DTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHIS 142

Query: 143 ALP-GFLLSMPQLDTVYRHGNH 163
           ++         +L  +    N 
Sbjct: 143 SIKLPKGFPTEKLKVLDFQNNA 164

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 2/82 (2%)

Query: 84  EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
           + L+L  N   SL  +       L +L L    L+             L  L L ++LLD
Sbjct: 379 QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD 438

Query: 143 ALP-GFLLSMPQLDTVYRHGNH 163
                    +P L  +   GNH
Sbjct: 439 ISSEQLFDGLPALQHLNLQGNH 460

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 19/109 (17%), Positives = 36/109 (33%), Gaps = 7/109 (6%)

Query: 66  LSLSYTPIGR---RIFK-CDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNAS 120
           L L+  P+             ++ L      ++S+    +     L  L L  N + +  
Sbjct: 86  LVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIK 145

Query: 121 IPFTLTFCKNLTHLYLDNNLLDAL-PGFLLSMPQLDTVYRHGNHNYFKS 168
           +P      + L  L   NN +  L    + S+ Q   +  + N N    
Sbjct: 146 LP-KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG 193

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 4/82 (4%)

Query: 84  EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
           E+L L    L+S+       L  +  + L+ N L + S    L+  K +  L L +N + 
Sbjct: 479 EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS-SSIEALSHLKGIY-LNLASNHIS 536

Query: 143 AL-PGFLLSMPQLDTVYRHGNH 163
            + P  L  + Q  T+    N 
Sbjct: 537 IILPSLLPILSQQRTINLRQNP 558

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 9/106 (8%)

Query: 66  LSLSY---TPIGRRIFK-CDTVEVLSLKSNSLTSLPPD----IGRLTNLRVLCLTDNCLQ 117
           L+LS+        ++F     ++ L+L+ N            +  L  L +L L+   L 
Sbjct: 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489

Query: 118 NASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
           +       T  K + H+ L +N L +     LS  +   +    NH
Sbjct: 490 S-IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNH 534

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 13/90 (14%), Positives = 25/90 (27%), Gaps = 4/90 (4%)

Query: 82  TVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCK--NLTHLYL-DN 138
           T   L+L  N +  + P        + L               L      +L      D 
Sbjct: 180 TNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFK-GLKNSTIQSLWLGTFEDM 238

Query: 139 NLLDALPGFLLSMPQLDTVYRHGNHNYFKS 168
           +  D  P     + ++     +   +YF +
Sbjct: 239 DDEDISPAVFEGLCEMSVESINLQKHYFFN 268

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.2 bits (105), Expect = 6e-05
 Identities = 19/81 (23%), Positives = 28/81 (34%), Gaps = 5/81 (6%)

Query: 66  LSLSY---TPIGRRIFK-CDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASI 121
           L LS+   + I +  F     +  + L  N LTS   +         L L  N +    +
Sbjct: 481 LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISI-IL 539

Query: 122 PFTLTFCKNLTHLYLDNNLLD 142
           P  L        + L  N LD
Sbjct: 540 PSLLPILSQQRTINLRQNPLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 11/106 (10%), Positives = 28/106 (26%), Gaps = 8/106 (7%)

Query: 66  LSLSYTPIG---RRIFKCDTVEVLSLKSNSLTSLPP---DIGRLTNLRVLCLTDNCLQN- 118
           L+L+   I       F     + L+        +         + +L +    D   ++ 
Sbjct: 184 LNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI 243

Query: 119 ASIPFTLTFCKNLTHLYLDNNLLDAL-PGFLLSMPQLDTVYRHGNH 163
           +   F      ++  + L  +    +          L  +     H
Sbjct: 244 SPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH 289

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 12/57 (21%), Positives = 18/57 (31%), Gaps = 1/57 (1%)

Query: 84  EVLSLKSNSLTSLPP-DIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNN 139
           +VL  ++N++  L   D+  L     L L  N    A I            L     
Sbjct: 156 KVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGT 212

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 63.1 bits (154), Expect = 4e-11
 Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 7/102 (6%)

Query: 66  LSLSY---TPIGRRIFKCDTVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASI 121
           L +S    T I + + +  T+  L L  N + ++  +   R + L  L L  N ++    
Sbjct: 177 LRISEAKLTGIPKDLPE--TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE- 233

Query: 122 PFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
             +L+F   L  L+LDNN L  +P  L  +  L  VY H N+
Sbjct: 234 NGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN 275

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 23/98 (23%), Positives = 36/98 (36%), Gaps = 6/98 (6%)

Query: 67  SLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIP-FTL 125
            L  +      F    +  L +    LT +P D+     L  L L  N +Q  +I    L
Sbjct: 158 PLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL--PETLNELHLDHNKIQ--AIELEDL 213

Query: 126 TFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGN 162
                L  L L +N +  +  G L  +P L  ++   N
Sbjct: 214 LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN 251

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 55.8 bits (135), Expect = 9e-09
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 4/83 (4%)

Query: 82  TVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNL 140
              +L L++N ++ L  D    L +L  L L +N +         +  + L  LY+  N 
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH-EKAFSPLRKLQKLYISKNH 113

Query: 141 LDALPGFLLSMPQLDTVYRHGNH 163
           L  +P  L     L  +  H N 
Sbjct: 114 LVEIPPNLP--SSLVELRIHDNR 134

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 3/69 (4%)

Query: 84  EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFCK-NLTHLYLDNNLL 141
             L +  N +  +P  +   L N+  + +  N L+N+       F    L +L +    L
Sbjct: 126 VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFE-PGAFDGLKLNYLRISEAKL 184

Query: 142 DALPGFLLS 150
             +P  L  
Sbjct: 185 TGIPKDLPE 193

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 52.7 bits (127), Expect = 8e-08
 Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 84  EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
             L L +N ++ +       L  L+ L ++ N L    IP  L    +L  L + +N + 
Sbjct: 81  YALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV--EIPPNL-P-SSLVELRIHDNRIR 136

Query: 143 ALPGFLLS-MPQLDTVYRHGNH 163
            +P  + S +  ++ +   GN 
Sbjct: 137 KVPKGVFSGLRNMNCIEMGGNP 158

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 20/108 (18%), Positives = 34/108 (31%), Gaps = 18/108 (16%)

Query: 66  LSLSY---TPIGRRIFK-CDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASI 121
           L L +     I         T+  L L +N L+ +P  +  L  L+V+ L  N +    +
Sbjct: 222 LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNIT--KV 279

Query: 122 PFTLTFC--------KNLTHLYLDNNLLDAL---PGFLLSMPQLDTVY 158
                FC             + L NN +      P     +     + 
Sbjct: 280 GVN-DFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQ 326

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 12/86 (13%), Positives = 29/86 (33%), Gaps = 13/86 (15%)

Query: 66  LSLSYTPIGR---RIFKCDTVEVLSLKSNSLTSLPPDI-------GRLTNLRVLCLTDNC 115
           L L    + R    +     ++V+ L +N++T +  +         +      + L +N 
Sbjct: 246 LHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305

Query: 116 LQNASIPFTLTFC--KNLTHLYLDNN 139
           +    +    TF    +   +   N 
Sbjct: 306 VPYWEVQPA-TFRCVTDRLAIQFGNY 330

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 62.7 bits (153), Expect = 4e-11
 Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 2/82 (2%)

Query: 84  EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
             L +           I   L++L VL +  N  Q   +P   T  +NLT L L    L+
Sbjct: 129 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188

Query: 143 ALP-GFLLSMPQLDTVYRHGNH 163
            L      S+  L  +    N+
Sbjct: 189 QLSPTAFNSLSSLQVLNMSHNN 210

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 2/84 (2%)

Query: 82  TVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASI-PFTLTFCKNLTHLYLDNN 139
           +   L L+SN L SLP  +  +LT L  L L+ N L        +     +L +L L  N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 140 LLDALPGFLLSMPQLDTVYRHGNH 163
            +  +    L + QL+ +    ++
Sbjct: 89  GVITMSSNFLGLEQLEHLDFQHSN 112

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 59.3 bits (144), Expect = 6e-10
 Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 2/100 (2%)

Query: 67  SLSYTPIGRRIF-KCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTL 125
            LS+     +      +++ L L  N + ++  +   L  L  L    + L+  S     
Sbjct: 63  GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 122

Query: 126 TFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGNHN 164
              +NL +L + +        G    +  L+ +   GN  
Sbjct: 123 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 17/83 (20%), Positives = 26/83 (31%), Gaps = 6/83 (7%)

Query: 84  EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPF-TLTFCKNLTHLYLDNNLL 141
             L L    L  L P     L++L+VL ++ N     S+         +L  L    N +
Sbjct: 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF--SLDTFPYKCLNSLQVLDYSLNHI 235

Query: 142 DALPGFLLS--MPQLDTVYRHGN 162
                  L      L  +    N
Sbjct: 236 MTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 9/84 (10%)

Query: 66  LSLSY---TPIGRRIFKC-DTVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNAS 120
           L LS      +    F    +++VL++  N+  SL       L +L+VL  + N +   +
Sbjct: 180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM--T 237

Query: 121 IPFTL--TFCKNLTHLYLDNNLLD 142
                   F  +L  L L  N   
Sbjct: 238 SKKQELQHFPSSLAFLNLTQNDFA 261

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.5 bits (155), Expect = 5e-11
 Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 3/82 (3%)

Query: 84  EVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
           + L L    + ++       L +L  L LT N +Q+   P + +   +L +L      L 
Sbjct: 59  QWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS-FSPGSFSGLTSLENLVAVETKLA 117

Query: 143 ALP-GFLLSMPQLDTVYRHGNH 163
           +L    +  +  L  +    N 
Sbjct: 118 SLESFPIGQLITLKKLNVAHNF 139

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 60.8 bits (148), Expect = 4e-10
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 1/68 (1%)

Query: 84  EVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
           E L      L SL    IG+L  L+ L +  N + +  +P   +   NL H+ L  N + 
Sbjct: 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166

Query: 143 ALPGFLLS 150
            +    L 
Sbjct: 167 TITVNDLQ 174

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 2/82 (2%)

Query: 84  EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
             L +   +       I   LT+L  L +  N  ++ ++        NLT L L    L+
Sbjct: 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE 486

Query: 143 ALP-GFLLSMPQLDTVYRHGNH 163
            +  G   ++ +L  +    N+
Sbjct: 487 QISWGVFDTLHRLQLLNMSHNN 508

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 20/124 (16%), Positives = 37/124 (29%), Gaps = 12/124 (9%)

Query: 52  SHIWIPQYFSHAFL-----LSLSYTPIGR------RIFKCDTVEVLSLKSNSLTSLPPDI 100
           +       F    L     L LS   +             +++  L L  N    +  + 
Sbjct: 336 TMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANF 395

Query: 101 GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYR 159
             L  L+ L    + L+  +        + L +L +          G  L +  L+T+  
Sbjct: 396 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKM 455

Query: 160 HGNH 163
            GN 
Sbjct: 456 AGNS 459

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 13/82 (15%), Positives = 23/82 (28%), Gaps = 3/82 (3%)

Query: 84  EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
             L L    L  +   +   L  L++L ++ N L             +L+ L    N ++
Sbjct: 476 TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF-LDSSHYNQLYSLSTLDCSFNRIE 534

Query: 143 ALP-GFLLSMPQLDTVYRHGNH 163
                       L       N 
Sbjct: 535 TSKGILQHFPKSLAFFNLTNNS 556

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 3/75 (4%)

Query: 82  TVEVLSLKSNSLTSLPP-DIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNL 140
           + + + L  N L  L        + L+ L L+   ++            +L++L L  N 
Sbjct: 33  STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET-IEDKAWHGLHHLSNLILTGNP 91

Query: 141 LDAL-PGFLLSMPQL 154
           + +  PG    +  L
Sbjct: 92  IQSFSPGSFSGLTSL 106

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.8 bits (122), Expect = 5e-07
 Identities = 20/105 (19%), Positives = 30/105 (28%), Gaps = 10/105 (9%)

Query: 66  LSLSY---TPIGRRIFKCDT-VEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASI 121
             L+Y          F C   V  +SL   S+  L          + L +    L+    
Sbjct: 266 FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPK-HFKWQSLSIIRCQLK--QF 322

Query: 122 PFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNHNYF 166
           P        L  L L  N         +++P L  +    N   F
Sbjct: 323 PTL--DLPFLKSLTLTMNKGSISFKK-VALPSLSYLDLSRNALSF 364

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.4 bits (121), Expect = 8e-07
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 6/82 (7%)

Query: 66  LSLSY---TPIGRRIFK-CDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNAS 120
           L LS      I   +F     +++L++  N+L  L      +L +L  L  + N ++  S
Sbjct: 478 LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET-S 536

Query: 121 IPFTLTFCKNLTHLYLDNNLLD 142
                 F K+L    L NN + 
Sbjct: 537 KGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 4/80 (5%)

Query: 85  VLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDAL 144
                   L+ +P DI   ++ + + L+ N L+     ++ +    L  L L    ++ +
Sbjct: 15  TYQCMDQKLSKVPDDIP--SSTKNIDLSFNPLKI-LKSYSFSNFSELQWLDLSRCEIETI 71

Query: 145 -PGFLLSMPQLDTVYRHGNH 163
                  +  L  +   GN 
Sbjct: 72  EDKAWHGLHHLSNLILTGNP 91

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 11/92 (11%), Positives = 21/92 (22%), Gaps = 7/92 (7%)

Query: 84  EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDA 143
             L +  N +  +     +   L  L L  N   +  +   L     L    L       
Sbjct: 184 LSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD 243

Query: 144 L-------PGFLLSMPQLDTVYRHGNHNYFKS 168
                   P  +  +  +        +    S
Sbjct: 244 ERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFS 275

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 13/90 (14%), Positives = 24/90 (26%), Gaps = 6/90 (6%)

Query: 82  TVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNL 140
           T++   L   +  S        L N+  + L    +        +        L +    
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI---KYLEDVPKHFKWQSLSIIRCQ 318

Query: 141 LDALPGFLLSMPQLDTVYRHGNHNYFKSTF 170
           L   P   L +P L ++    N        
Sbjct: 319 LKQFPT--LDLPFLKSLTLTMNKGSISFKK 346

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 63.1 bits (154), Expect = 5e-11
 Identities = 23/87 (26%), Positives = 29/87 (33%), Gaps = 16/87 (18%)

Query: 84  EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCL---------------QNASIPFTLTFC 128
           E L    NSLT LP     L +L V       L               Q   +P  L   
Sbjct: 94  ESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP-ELQNS 152

Query: 129 KNLTHLYLDNNLLDALPGFLLSMPQLD 155
             L  + +DNN L  LP    S+  + 
Sbjct: 153 SFLKIIDVDNNSLKKLPDLPPSLEFIA 179

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 61.9 bits (151), Expect = 1e-10
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 6/79 (7%)

Query: 77  IFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL 136
           +     ++++ + +NSL  LP       +L  +   +N L+   +P  L     LT +Y 
Sbjct: 149 LQNSSFLKIIDVDNNSLKKLPDLPP---SLEFIAAGNNQLE--ELP-ELQNLPFLTAIYA 202

Query: 137 DNNLLDALPGFLLSMPQLD 155
           DNN L  LP   LS+  + 
Sbjct: 203 DNNSLKKLPDLPLSLESIV 221

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 8/90 (8%)

Query: 66  LSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTL 125
           L+ S   I        ++E L++ +N L  LP        L  L  + N L    +P   
Sbjct: 302 LNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPP---RLERLIASFNHLA--EVPELP 356

Query: 126 TFCKNLTHLYLDNNLLDALPGFLLSMPQLD 155
               NL  L+++ N L   P    S+  L 
Sbjct: 357 Q---NLKQLHVEYNPLREFPDIPESVEDLR 383

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 56.5 bits (137), Expect = 7e-09
 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 9/87 (10%)

Query: 77  IFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL 136
           +     +  +   +NSL  LP       +L  +   +N L+   +P  L     LT +Y 
Sbjct: 191 LQNLPFLTAIYADNNSLKKLPDLPL---SLESIVAGNNILE--ELP-ELQNLPFLTTIYA 244

Query: 137 DNNLLDALPGFLLSMPQLDTVYRHGNH 163
           DNNLL  LP      P L+ +    N+
Sbjct: 245 DNNLLKTLPDLP---PSLEALNVRDNY 268

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 56.5 bits (137), Expect = 7e-09
 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 6/80 (7%)

Query: 84  EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDA 143
           E +   +N L  LP ++  L  L  +   +N L+  ++P       +L  L + +N L  
Sbjct: 218 ESIVAGNNILEELP-ELQNLPFLTTIYADNNLLK--TLPDLPP---SLEALNVRDNYLTD 271

Query: 144 LPGFLLSMPQLDTVYRHGNH 163
           LP    S+  LD      + 
Sbjct: 272 LPELPQSLTFLDVSENIFSG 291

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 9/72 (12%)

Query: 84  EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDA 143
           + L ++ N L   P     + +LR+          A +P      +NL  L+++ N L  
Sbjct: 360 KQLHVEYNPLREFPDIPESVEDLRMNS------HLAEVP---ELPQNLKQLHVETNPLRE 410

Query: 144 LPGFLLSMPQLD 155
            P    S+  L 
Sbjct: 411 FPDIPESVEDLR 422

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 15/100 (15%), Positives = 32/100 (32%), Gaps = 15/100 (15%)

Query: 76  RIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLT--------- 126
           R      ++     S++LT +P +   + +        +  +  + P             
Sbjct: 6   RNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL 65

Query: 127 ---FCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
                +    L L+N  L +LP      P L+++    N 
Sbjct: 66  RDCLDRQAHELELNNLGLSSLPE---LPPHLESLVASCNS 102

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.8 bits (130), Expect = 5e-08
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 8/72 (11%)

Query: 84  EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDA 143
           E L+++ N LT LP     LT L V     + L             NL +L   +N + +
Sbjct: 260 EALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSE--------LPPNLYYLNASSNEIRS 311

Query: 144 LPGFLLSMPQLD 155
           L     S+ +L+
Sbjct: 312 LCDLPPSLEELN 323

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.4 bits (121), Expect = 7e-07
 Identities = 19/106 (17%), Positives = 35/106 (33%), Gaps = 19/106 (17%)

Query: 64  FLLSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRL--------------TNLRVL 109
            +     T +         ++V     + L+ LPP++  L               +L  L
Sbjct: 263 NVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEEL 322

Query: 110 CLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLD 155
            +++N L    +P        L  L    N L  +P    ++ QL 
Sbjct: 323 NVSNNKLI--ELPALPP---RLERLIASFNHLAEVPELPQNLKQLH 363

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 8/58 (13%), Positives = 20/58 (34%), Gaps = 4/58 (6%)

Query: 84  EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLL 141
           + L +++N L   P     + +LR   +    + +    F       L     +++  
Sbjct: 399 KQLHVETNPLREFPDIPESVEDLR---MNSERVVD-PYEFAHETTDKLEDDVFEHHHH 452

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 63.6 bits (155), Expect = 5e-11
 Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 2/82 (2%)

Query: 84  EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
             L +           I   L++L VL +  N  Q   +P   T  +NLT L L    L+
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 143 ALP-GFLLSMPQLDTVYRHGNH 163
            L      S+  L  +    N 
Sbjct: 484 QLSPTAFNSLSSLQVLNMASNQ 505

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 60.9 bits (148), Expect = 3e-10
 Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 8/111 (7%)

Query: 66  LSLSY---TPIGRRIF-KCDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNAS 120
           L L+      +    F    +++ L     +L SL    IG L  L+ L +  N +Q+  
Sbjct: 81  LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 121 IPFTLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGN--HNYFKS 168
           +P   +   NL HL L +N + ++    L  + Q+  +    +   N    
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.7 bits (145), Expect = 8e-10
 Identities = 18/100 (18%), Positives = 40/100 (40%), Gaps = 4/100 (4%)

Query: 65  LLSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASI-PF 123
           L++  +        K  +++ L+  SN   +   ++  L +L  L L+ N L        
Sbjct: 311 LVNCKFGQFPTLKLK--SLKRLTFTSNKGGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQ 367

Query: 124 TLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
           +     +L +L L  N +  +    L + QL+ +    ++
Sbjct: 368 SDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 407

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.7 bits (145), Expect = 8e-10
 Identities = 19/105 (18%), Positives = 37/105 (35%), Gaps = 7/105 (6%)

Query: 66  LSLSYTPIGRR------IFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNA 119
           L LS   +  +       F   +++ L L  N + ++  +   L  L  L    + L+  
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM 411

Query: 120 SIPFTLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGNH 163
           S        +NL +L + +        G    +  L+ +   GN 
Sbjct: 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 5/85 (5%)

Query: 82  TVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPF-TLTFCKNLTHLYLDNN 139
           + + L L  N L  L          L+VL L+   +Q  +I         +L+ L L  N
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ--TIEDGAYQSLSHLSTLILTGN 86

Query: 140 LLDALP-GFLLSMPQLDTVYRHGNH 163
            + +L  G    +  L  +     +
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETN 111

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 6/83 (7%)

Query: 84  EVLSLKSNSLT-SLPPDI-GRLTNLRVLCLTDNCLQNASIPF-TLTFCKNLTHLYLDNNL 140
           EVL +  NS   +  PDI   L NL  L L+   L+   +         +L  L + +N 
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE--QLSPTAFNSLSSLQVLNMASNQ 505

Query: 141 LDALP-GFLLSMPQLDTVYRHGN 162
           L ++P G    +  L  ++ H N
Sbjct: 506 LKSVPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 84  EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP-FTLTFCKNLTHLYLDNNLL 141
             L L    L  L P     L++L+VL +  N L+  S+P        +L  ++L  N  
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK--SVPDGIFDRLTSLQKIWLHTNPW 530

Query: 142 D 142
           D
Sbjct: 531 D 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 18/104 (17%), Positives = 29/104 (27%), Gaps = 6/104 (5%)

Query: 66  LSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTL 125
           L      I         V   SL S ++  +          + L L +         F  
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY-NFGWQHLELVNCKFGQ----FPT 321

Query: 126 TFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNHNYFKST 169
              K+L  L   +N         + +P L+ +    N   FK  
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGC 364

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 19/128 (14%), Positives = 33/128 (25%), Gaps = 7/128 (5%)

Query: 86  LSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLD-------N 138
           L L  N +  + P   +   L  L L +N      +   +     L    L         
Sbjct: 182 LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241

Query: 139 NLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEVLRKQKKLH 198
           NL       L  +  L        +  +    +    +    + S S     + + K   
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS 301

Query: 199 QPSRLQDL 206
                Q L
Sbjct: 302 YNFGWQHL 309

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 6/81 (7%)

Query: 85  VLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIP-FTLTFCKNLTHLYLDNNLLDA 143
                  +   +P ++    + + L L+ N L+   +  ++      L  L L    +  
Sbjct: 11  TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLR--HLGSYSFFSFPELQVLDLSRCEIQT 66

Query: 144 LP-GFLLSMPQLDTVYRHGNH 163
           +  G   S+  L T+   GN 
Sbjct: 67  IEDGAYQSLSHLSTLILTGNP 87

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 7/87 (8%)

Query: 84  EVLSLKSNSLTSLPPD--IGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLT----HLYLD 137
           + L++  N + S         LTNL  L L+ N +Q+      L     +      L L 
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY-CTDLRVLHQMPLLNLSLDLS 185

Query: 138 NNLLDALPGFLLSMPQLDTVYRHGNHN 164
            N ++ +        +L  +    N +
Sbjct: 186 LNPMNFIQPGAFKEIRLHKLTLRNNFD 212

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 63.4 bits (154), Expect = 5e-11
 Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 5/77 (6%)

Query: 66  LSLSYTPIGRRIFKC--DTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPF 123
           L+LS   +   +F+C    V+VL L +N + S+P D+  L  L+ L +  N L+  S+P 
Sbjct: 433 LNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK--SVPD 490

Query: 124 -TLTFCKNLTHLYLDNN 139
                  +L +++L +N
Sbjct: 491 GVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 62.6 bits (152), Expect = 1e-10
 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 7/81 (8%)

Query: 85  VLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDA 143
           VL L  N + SL   +     +L  L ++ N LQ  +I        +L HL L  N  D 
Sbjct: 80  VLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ--NISCCPM--ASLRHLDLSFNDFDV 135

Query: 144 LP--GFLLSMPQLDTVYRHGN 162
           LP      ++ +L  +     
Sbjct: 136 LPVCKEFGNLTKLTFLGLSAA 156

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 51.8 bits (124), Expect = 3e-07
 Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 6/100 (6%)

Query: 65  LLSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLT-NLRVLCLTDNCLQNASIPF 123
           L SL+     R     +++ VL+L SN LT        L   ++VL L +N +   SIP 
Sbjct: 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR--CLPPKVKVLDLHNNRIM--SIPK 467

Query: 124 TLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGN 162
            +T  + L  L + +N L ++P G    +  L  ++ H N
Sbjct: 468 DVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 51.4 bits (123), Expect = 4e-07
 Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 6/87 (6%)

Query: 84  EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTF--CKNLTHLYLDNNLL 141
           E L +  N L ++      + +LR L L+ N      +P    F     LT L L     
Sbjct: 103 EYLDVSHNRLQNISCC--PMASLRHLDLSFNDFD--VLPVCKEFGNLTKLTFLGLSAAKF 158

Query: 142 DALPGFLLSMPQLDTVYRHGNHNYFKS 168
             L    ++   L  +       + K 
Sbjct: 159 RQLDLLPVAHLHLSCILLDLVSYHIKG 185

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 51.0 bits (122), Expect = 5e-07
 Identities = 15/104 (14%), Positives = 30/104 (28%), Gaps = 25/104 (24%)

Query: 84  EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQN---------ASIPFTLTF------- 127
           + L L+ N L +         N+  L   D  L +          +   ++         
Sbjct: 380 QTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM 439

Query: 128 ---------CKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGN 162
                       +  L L NN + ++P  +  +  L  +    N
Sbjct: 440 LTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASN 483

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 8/85 (9%), Positives = 26/85 (30%), Gaps = 3/85 (3%)

Query: 81  DTVEVLSLKSNSLTSLPPDIGR-LTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNN 139
            ++ +  +K+         +      + +  L+ +      +    +   + T L    N
Sbjct: 305 KSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPS-PSSFTFLNFTQN 363

Query: 140 LLDALP-GFLLSMPQLDTVYRHGNH 163
           +          ++ +L T+    N 
Sbjct: 364 VFTDSVFQGCSTLKRLQTLILQRNG 388

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 3/69 (4%)

Query: 78  FKCDTVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL 136
               +   L+   N  T         L  L+ L L  N L+  +        KN++ L  
Sbjct: 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK--NFFKVALMTKNMSSLET 407

Query: 137 DNNLLDALP 145
            +  L++L 
Sbjct: 408 LDVSLNSLN 416

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 16/86 (18%), Positives = 34/86 (39%), Gaps = 6/86 (6%)

Query: 80  CDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFT-LTFCKNLTHLYLDN 138
            +   ++   + +LT +P D+      + L L+ N +    +    ++F   L  L L +
Sbjct: 30  NELESMVDYSNRNLTHVPKDL--PPRTKALSLSQNSIS--ELRMPDISFLSELRVLRLSH 85

Query: 139 NLLDALP-GFLLSMPQLDTVYRHGNH 163
           N + +L     L    L+ +    N 
Sbjct: 86  NRIRSLDFHVFLFNQDLEYLDVSHNR 111

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 4/81 (4%)

Query: 86  LSLKSNSLTSLPP--DIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDA 143
           L L  N    LP   + G LT L  L L+    +   +        +L+ + LD      
Sbjct: 126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR--QLDLLPVAHLHLSCILLDLVSYHI 183

Query: 144 LPGFLLSMPQLDTVYRHGNHN 164
             G   S+   +T   H   +
Sbjct: 184 KGGETESLQIPNTTVLHLVFH 204

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 12/83 (14%), Positives = 21/83 (25%), Gaps = 4/83 (4%)

Query: 83  VEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFC-KNLTHLYLDNNL 140
           + +  L  +    +        ++   L  T N        F      K L  L L  N 
Sbjct: 331 MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT--DSVFQGCSTLKRLQTLILQRNG 388

Query: 141 LDALPGFLLSMPQLDTVYRHGNH 163
           L       L    + ++      
Sbjct: 389 LKNFFKVALMTKNMSSLETLDVS 411

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 63.2 bits (154), Expect = 6e-11
 Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 10/100 (10%)

Query: 66  LSLSYTPIGRRIFKC--DTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPF 123
           L+LS T I R +  C   T+EVL + +N+L S       L  L+ L ++ N L+  ++P 
Sbjct: 415 LNLSSTGI-RVVKTCIPQTLEVLDVSNNNLDSFSLF---LPRLQELYISRNKLK--TLPD 468

Query: 124 TLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGN 162
             +    L  + +  N L ++P G    +  L  ++ H N
Sbjct: 469 A-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.0 bits (138), Expect = 6e-09
 Identities = 25/101 (24%), Positives = 37/101 (36%), Gaps = 11/101 (10%)

Query: 66  LSLSY---TPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIP 122
           L +S     P+       + +  L+L S  +  +   I     L VL +++N L   S  
Sbjct: 392 LDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI--PQTLEVLDVSNNNLD--SFS 447

Query: 123 FTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
             L     L  LY+  N L  LP   L  P L  +    N 
Sbjct: 448 LFLP---RLQELYISRNKLKTLPDASL-FPVLLVMKISRNQ 484

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.3 bits (131), Expect = 5e-08
 Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 7/80 (8%)

Query: 84  EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDA 143
             L +  N+   +P        +R L L+   ++   +   +   + L  L + NN LD+
Sbjct: 390 TSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR--VVKTCIP--QTLEVLDVSNNNLDS 445

Query: 144 LPGFLLSMPQLDTVYRHGNH 163
              FL   P+L  +Y   N 
Sbjct: 446 FSLFL---PRLQELYISRNK 462

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.0 bits (130), Expect = 5e-08
 Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 3/83 (3%)

Query: 84  EVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL-DNNLL 141
           E L L  N L+SL     G L++L+ L L  N  Q   +        NL  L + +    
Sbjct: 77  EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF 136

Query: 142 DALP-GFLLSMPQLDTVYRHGNH 163
             +       +  L+ +      
Sbjct: 137 SEIRRIDFAGLTSLNELEIKALS 159

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.0 bits (130), Expect = 5e-08
 Identities = 24/108 (22%), Positives = 37/108 (34%), Gaps = 26/108 (24%)

Query: 80  CDTVEVLSLKSNSLTSLPPDI----------------------GRLTNLRVLCLTDNCLQ 117
           CD   V   +S S TS+P  +                          NL+VL L  + + 
Sbjct: 4   CDASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN 63

Query: 118 NASIPF-TLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGNH 163
             +I         +L HL L +N L +L   +   +  L  +   GN 
Sbjct: 64  --TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP 109

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 53.6 bits (129), Expect = 7e-08
 Identities = 19/128 (14%), Positives = 41/128 (32%), Gaps = 16/128 (12%)

Query: 52  SHIWIPQYFSHAFL-------LSLSYTPIG---RRIFK-CDTVEVLSLKSNSLTSLPPD- 99
              ++    S  +        +++  + +        +   ++E L L  N +       
Sbjct: 294 PQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKN 353

Query: 100 ---IGRLTNLRVLCLTDNCLQN-ASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLD 155
               G   +L+ L L+ N L++       L   KNLT L +  N    +P       ++ 
Sbjct: 354 SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMR 413

Query: 156 TVYRHGNH 163
            +      
Sbjct: 414 FLNLSSTG 421

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.9 bits (122), Expect = 5e-07
 Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 3/86 (3%)

Query: 84  EVLSLKSNSLTSLPPD--IGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLL 141
           + L+L  N   +L        LTNL+ L + +    +           +L  L +    L
Sbjct: 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160

Query: 142 DAL-PGFLLSMPQLDTVYRHGNHNYF 166
                  L S+  +  +  H + + F
Sbjct: 161 RNYQSQSLKSIRDIHHLTLHLSESAF 186

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 8/88 (9%)

Query: 82  TVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP-FTLTFCKNLTHLYLDNN 139
           T+  L +    L      +   L  ++ + + ++ +    +P       K+L  L L  N
Sbjct: 287 TIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF--LVPCSFSQHLKSLEFLDLSEN 344

Query: 140 LLDAL----PGFLLSMPQLDTVYRHGNH 163
           L+            + P L T+    NH
Sbjct: 345 LMVEEYLKNSACKGAWPSLQTLVLSQNH 372

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.9 bits (96), Expect = 7e-04
 Identities = 13/83 (15%), Positives = 31/83 (37%), Gaps = 4/83 (4%)

Query: 84  EVLSLKS-NSLTSLPP-DIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLL 141
           + L + +  + + +   D   LT+L  L +    L+N     +L   +++ HL L  +  
Sbjct: 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ-SQSLKSIRDIHHLTLHLSES 184

Query: 142 DALPGFLLS-MPQLDTVYRHGNH 163
             L       +  +  +     +
Sbjct: 185 AFLLEIFADILSSVRYLELRDTN 207

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 61.7 bits (150), Expect = 7e-11
 Identities = 26/82 (31%), Positives = 32/82 (39%), Gaps = 10/82 (12%)

Query: 86  LSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---FT-LTFCKNLTHLYLDNNL 140
           L LK N L +LPP +      L  L L +N L    +P      L    NL  L L  N 
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT--ELPAGLLNGLE---NLDTLLLQENS 183

Query: 141 LDALPGFLLSMPQLDTVYRHGN 162
           L  +P        L   + HGN
Sbjct: 184 LYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 58.2 bits (141), Expect = 1e-09
 Identities = 29/85 (34%), Positives = 36/85 (42%), Gaps = 10/85 (11%)

Query: 84  EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIP---FT-LTFCKNLTHLYLDNN 139
             L L  N L SLP     L  L VL ++ N L   S+P      L     L  LYL  N
Sbjct: 80  GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT--SLPLGALRGLG---ELQELYLKGN 134

Query: 140 LLDALP-GFLLSMPQLDTVYRHGNH 163
            L  LP G L   P+L+ +    N+
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNN 159

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 21/83 (25%), Positives = 29/83 (34%), Gaps = 4/83 (4%)

Query: 82  TVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNL 140
              +L L  N L +         T L  L L    L    +  TL     L  L L +N 
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLP---VLGTLDLSHNQ 88

Query: 141 LDALPGFLLSMPQLDTVYRHGNH 163
           L +LP    ++P L  +    N 
Sbjct: 89  LQSLPLLGQTLPALTVLDVSFNR 111

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 55.9 bits (135), Expect = 7e-09
 Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 5/84 (5%)

Query: 80  CDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNN 139
              +EV +    +LT+LPPD+    +  +L L++N L   S   TL     LT L LD  
Sbjct: 10  ASHLEV-NCDKRNLTALPPDL--PKDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRA 65

Query: 140 LLDALPGFLLSMPQLDTVYRHGNH 163
            L  L     ++P L T+    N 
Sbjct: 66  ELTKLQVD-GTLPVLGTLDLSHNQ 88

>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A Length = 220

 Score = 60.6 bits (147), Expect = 8e-11
 Identities = 22/168 (13%), Positives = 48/168 (28%), Gaps = 44/168 (26%)

Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
              + F    R+  GT+  ++EL +     G+  +     +                 M 
Sbjct: 52  RIYQWFMGVDRDRSGTL-EINELMMGQFPGGIRLSPQTALR-----------------M- 92

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                           +  DT  +G +SF +F+ +               + F      +
Sbjct: 93  ---------------MRIFDTDFNGHISFYEFMAMYKFMEL-------AYNLFVMNARAR 130

Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           SGT+    +   L   G  ++ +    + R       +      ++ I
Sbjct: 131 SGTLEPHEILPALQQLGFYINQRTSLLLHR-LFARGMAFCDLNCWIAI 177

>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A Length = 220

 Score = 45.9 bits (109), Expect = 6e-06
 Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 1/75 (1%)

Query: 357 LKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREA 416
              +      +     +   F   D  +SGT+    L       G  LS +   ++ R  
Sbjct: 38  WFPLLNTIPLDQYT-RIYQWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMRIF 96

Query: 417 NVTMNSKVRYEDFVK 431
           +   N  + + +F+ 
Sbjct: 97  DTDFNGHISFYEFMA 111

>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7 Length = 105

 Score = 57.9 bits (140), Expect = 8e-11
 Identities = 15/82 (18%), Positives = 36/82 (43%), Gaps = 2/82 (2%)

Query: 350 KLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEV 409
             +  D L  +H    +      +   F+  DT K+ T+  +  + +     + L+ ++ 
Sbjct: 5   ATADRDILARLHKAVTSHY--HAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQF 62

Query: 410 DQIFREANVTMNSKVRYEDFVK 431
           D+++ E  V    +++Y DF+ 
Sbjct: 63  DRLWNEMPVNAKGRLKYPDFLS 84

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 62.5 bits (152), Expect = 1e-10
 Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 15/117 (12%)

Query: 56  IPQYFSHAFLLSLSY---TPIGRRIF-KCDTVEVLSLKSNSLTSLPPDI-GRLTNLRVLC 110
           +  +F+    L+L+      I    F     +  L+L  N L S+   +   L  L VL 
Sbjct: 294 VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353

Query: 111 LTDNCLQNASIP---FT-LTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGN 162
           L+ N ++  ++    F  L    NL  L LD N L ++P G    +  L  ++ H N
Sbjct: 354 LSYNHIR--ALGDQSFLGLP---NLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 59.8 bits (145), Expect = 6e-10
 Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 7/85 (8%)

Query: 83  VEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTF--CKNLTHLYLDNN 139
           V+   L  + + +L   +    T+L  L L  N +    I     F    +L  L L  N
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN--KID-DNAFWGLTHLLKLNLSQN 333

Query: 140 LLDALPGFLL-SMPQLDTVYRHGNH 163
            L ++   +  ++ +L+ +    NH
Sbjct: 334 FLGSIDSRMFENLDKLEVLDLSYNH 358

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 59.0 bits (143), Expect = 1e-09
 Identities = 27/104 (25%), Positives = 40/104 (38%), Gaps = 9/104 (8%)

Query: 66  LSLSY---TPIGRRIFKCDT-VEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNAS 120
             LS      + + +F   T +E L+L  N +  +  +    LT+L  L L+ N L   S
Sbjct: 280 CDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG--S 337

Query: 121 IP-FTLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGN 162
           I          L  L L  N + AL     L +P L  +    N
Sbjct: 338 IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 54.8 bits (132), Expect = 3e-08
 Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 2/84 (2%)

Query: 82  TVEVLSLKSNSLTSLPP-DIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNL 140
            V  + L  NS+  L      RL +L+ L +            T     +L  L LD N 
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 141 LDALP-GFLLSMPQLDTVYRHGNH 163
              L  G    +  L+ +     +
Sbjct: 91  FLQLETGAFNGLANLEVLTLTQCN 114

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 51.3 bits (123), Expect = 4e-07
 Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 8/83 (9%)

Query: 66  LSLSY---TPIGRRIF-KCDTVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNAS 120
           L+LS      I  R+F   D +EVL L  N + +L       L NL+ L L  N L+  S
Sbjct: 328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK--S 385

Query: 121 IPF-TLTFCKNLTHLYLDNNLLD 142
           +P        +L  ++L  N  D
Sbjct: 386 VPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 47.0 bits (112), Expect = 7e-06
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 8/91 (8%)

Query: 84  EVLSLKSNSLTS--LPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFCK--NLTHLYLDN 138
           EVL+L   +L    L  +    LT+L +L L DN ++   I     F        L L  
Sbjct: 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK--KIQPASFFLNMRRFHVLDLTF 163

Query: 139 NLLDALP-GFLLSMPQLDTVYRHGNHNYFKS 168
           N + ++    LL+           +    + 
Sbjct: 164 NKVKSICEEDLLNFQGKHFTLLRLSSITLQD 194

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 62.6 bits (152), Expect = 1e-10
 Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 7/95 (7%)

Query: 66  LSLSY---TPIGRRIFK-CDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASI 121
           + LSY     I    F     +E L + +N L +L      +  L+VL L+ N L    +
Sbjct: 259 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL--HV 316

Query: 122 PFTLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLD 155
                    L +LYLD+N +  L      ++  L 
Sbjct: 317 ERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLT 351

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 57.6 bits (139), Expect = 4e-09
 Identities = 15/83 (18%), Positives = 36/83 (43%), Gaps = 5/83 (6%)

Query: 84  EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP-FTLTFCKNLTHLYLDNNLL 141
           ++++ K++++  LP  +      + +L L D  ++   I  +   +   +  LY+  N +
Sbjct: 54  KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE--EIDTYAFAYAHTIQKLYMGFNAI 111

Query: 142 DALP-GFLLSMPQLDTVYRHGNH 163
             LP     ++P L  +    N 
Sbjct: 112 RYLPPHVFQNVPLLTVLVLERND 134

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 56.5 bits (136), Expect = 1e-08
 Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 5/83 (6%)

Query: 84  EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPF-TLTFCKNLTHLYLDNNLL 141
           E+L+L    +  +          ++ L +  N ++   +P         LT L L+ N L
Sbjct: 78  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR--YLPPHVFQNVPLLTVLVLERNDL 135

Query: 142 DALPGFLLS-MPQLDTVYRHGNH 163
            +LP  +    P+L T+    N+
Sbjct: 136 SSLPRGIFHNTPKLTTLSMSNNN 158

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 56.1 bits (135), Expect = 1e-08
 Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 7/108 (6%)

Query: 57  PQYFSHAFLLSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCL 116
                  F  ++SY  +   +     VE L    NS+  +   +     L +L L  N L
Sbjct: 188 LSLIPSLFHANVSYNLL-STLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNL 244

Query: 117 QNASIPFTLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGNH 163
            + +    L     L  + L  N L+ +     + M +L+ +Y   N 
Sbjct: 245 TDTA---WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 289

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 56.1 bits (135), Expect = 1e-08
 Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 84  EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP-FTLTFCKNLTHLYLDNNLL 141
            VL L+ N L+SLP  I      L  L +++N L+   I   T     +L +L L +N L
Sbjct: 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE--RIEDDTFQATTSLQNLQLSSNRL 183

Query: 142 DALPGFLLSMPQLDTVYRHGNH 163
             +   L+  P L       N 
Sbjct: 184 THVDLSLI--PSLFHANVSYNL 203

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.4 bits (128), Expect = 8e-08
 Identities = 27/117 (23%), Positives = 41/117 (35%), Gaps = 22/117 (18%)

Query: 66  LSLSY---TPIGRRIFK-CDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASI 121
           LS+S      I    F+   +++ L L SN LT +      + +L    ++ N L   +I
Sbjct: 152 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL--SLIPSLFHANVSYNLLSTLAI 209

Query: 122 PFTLT---------------FCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
           P  +                    LT L L +N L       L+ P L  V    N 
Sbjct: 210 PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWL-LNYPGLVEVDLSYNE 265

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 52.6 bits (126), Expect = 2e-07
 Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 9/94 (9%)

Query: 66  LSLSY---TPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIP 122
           L +S      +        T++VL L  N L  +  +  +   L  L L  N +   ++ 
Sbjct: 283 LYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV--TLK 340

Query: 123 FTLTFCKNLTHLYLDNNLL--DALPGFLLSMPQL 154
            + T    L +L L +N    ++L     ++ + 
Sbjct: 341 LS-TH-HTLKNLTLSHNDWDCNSLRALFRNVARP 372

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.7 bits (153), Expect = 1e-10
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 3/82 (3%)

Query: 84  EVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
             L +  N+++ L P+   +L  L+VL L  N L       T  FC NLT L+L +N + 
Sbjct: 52  TSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ-LSDKTFAFCTNLTELHLMSNSIQ 110

Query: 143 AL-PGFLLSMPQLDTVYRHGNH 163
            +     +    L T+    N 
Sbjct: 111 KIKNNPFVKQKNLITLDLSHNG 132

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.2 bits (149), Expect = 3e-10
 Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 5/84 (5%)

Query: 84  EVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
             L L SNS+  +  +   +  NL  L L+ N L + +   T    +NL  L L NN + 
Sbjct: 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS-TKLGTQVQLENLQELLLSNNKIQ 158

Query: 143 ALPG---FLLSMPQLDTVYRHGNH 163
           AL      + +   L  +    N 
Sbjct: 159 ALKSEELDIFANSSLKKLELSSNQ 182

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.4 bits (147), Expect = 5e-10
 Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 2/70 (2%)

Query: 82  TVEVLSLKSNSLTSLPP-DIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNL 140
            + VL+L  N L  LP  +  R + L  L +  N +     P        L  L L +N 
Sbjct: 26  NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK-LEPELCQKLPMLKVLNLQHNE 84

Query: 141 LDALPGFLLS 150
           L  L     +
Sbjct: 85  LSQLSDKTFA 94

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 59.6 bits (145), Expect = 9e-10
 Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 8/106 (7%)

Query: 66  LSLSYTPIGRRI----FK-CDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQN- 118
           L L    IG+ +    ++  + +  + L  N    L  +    + +L+ L L    L+N 
Sbjct: 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 469

Query: 119 ASIPFTLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGNH 163
            S P      +NLT L L NN +  +    L  + +L+ +    N+
Sbjct: 470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN 515

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 2/82 (2%)

Query: 84  EVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
            +L+L  N ++ +  D    L +L VL L  N +            +N+  +YL  N   
Sbjct: 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443

Query: 143 AL-PGFLLSMPQLDTVYRHGNH 163
            L       +P L  +      
Sbjct: 444 QLTRNSFALVPSLQRLMLRRVA 465

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.3 bits (139), Expect = 5e-09
 Identities = 22/117 (18%), Positives = 45/117 (38%), Gaps = 14/117 (11%)

Query: 66  LSLSY---TPIGRRIF-KCDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQ--- 117
           L LSY     +G   F     +E   L+ N++  L    +  L N+R L L  +  +   
Sbjct: 253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI 312

Query: 118 -----NASIPFTLTFCKNLTHLYLDNNLLDALPGFLLS-MPQLDTVYRHGNHNYFKS 168
                     F+  + K L HL +++N +  +   + + +  L  +    +    ++
Sbjct: 313 SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 369

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 26/87 (29%), Positives = 34/87 (39%), Gaps = 5/87 (5%)

Query: 79  KCDTV-EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLD 137
           KC    EV       LT +P D+   TN+ VL LT N L+        T    LT L + 
Sbjct: 1   KCTVSHEVADCSHLKLTQVPDDL--PTNITVLNLTHNQLRR-LPAANFTRYSQLTSLDVG 57

Query: 138 NNLLDAL-PGFLLSMPQLDTVYRHGNH 163
            N +  L P     +P L  +    N 
Sbjct: 58  FNTISKLEPELCQKLPMLKVLNLQHNE 84

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.9 bits (130), Expect = 6e-08
 Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 11/90 (12%)

Query: 66  LSLSY------TPIGRRIFKCDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQN 118
           L LS             IF   +++ L L SN +    P     +  L  L L +  L  
Sbjct: 150 LLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL-G 208

Query: 119 ASIPFTLTF---CKNLTHLYLDNNLLDALP 145
            S+   L       ++ +L L N+ L    
Sbjct: 209 PSLTEKLCLELANTSIRNLSLSNSQLSTTS 238

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 15/92 (16%), Positives = 34/92 (36%), Gaps = 5/92 (5%)

Query: 77  IFKCDTVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---FTLTFCKNLT 132
                 +E L+++ N +  +  ++   L NL+ L L+++     ++    F       L 
Sbjct: 325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLH 384

Query: 133 HLYLDNNLLDAL-PGFLLSMPQLDTVYRHGNH 163
            L L  N +  +       +  L+ +    N 
Sbjct: 385 ILNLTKNKISKIESDAFSWLGHLEVLDLGLNE 416

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 12/108 (11%)

Query: 66  LSLSYTPIGRRI-------FKCDTVEVLSLKSNSLTSLPPDIG---RLTNLRVLCLTDNC 115
           L L+   +G  +           ++  LSL ++ L++         + TNL +L L+ N 
Sbjct: 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259

Query: 116 LQNASIPFTLTFCKNLTHLYLDNNLLDAL-PGFLLSMPQLDTVYRHGN 162
           L       +  +   L + +L+ N +  L    L  +  +  +    +
Sbjct: 260 LNV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.5 bits (124), Expect = 4e-07
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 9/89 (10%)

Query: 84  EVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQN-------ASIPFTLTFCKNLTHLY 135
            +L L +N++ ++  D +  L  L +L L  N L             + L    +L  L 
Sbjct: 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542

Query: 136 LDNNLLDALPGFLLS-MPQLDTVYRHGNH 163
           L++N  D +P  +   + +L  +    N+
Sbjct: 543 LESNGFDEIPVEVFKDLFELKIIDLGLNN 571

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 22/110 (20%), Positives = 45/110 (40%), Gaps = 9/110 (8%)

Query: 66  LSLSY---TPIGRRIFK-CDTVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNAS 120
           L+L       I   +FK    ++++ L  N+L +LP  +     +L+ L L  N + +  
Sbjct: 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600

Query: 121 IPFTLTFCKNLTHLYLDNNLL----DALPGFLLSMPQLDTVYRHGNHNYF 166
                   +NLT L +  N      +++  F+  + +  T     + +Y 
Sbjct: 601 KKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYL 650

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 24/82 (29%), Positives = 31/82 (37%), Gaps = 7/82 (8%)

Query: 85  VLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDA 143
           +L +  N +  L   +      L  L L+ N L    I    T   NL HL L  N  DA
Sbjct: 49  ILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV--KISCHPT--VNLKHLDLSFNAFDA 104

Query: 144 LP--GFLLSMPQLDTVYRHGNH 163
           LP      +M QL  +     H
Sbjct: 105 LPICKEFGNMSQLKFLGLSTTH 126

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 60.3 bits (146), Expect = 5e-10
 Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 10/90 (11%)

Query: 82  TVEVLSLKSNSLTSLPP-DIGRLTNLRVLCLTDNCLQNASIPF-TLTFCKNLTHLYLDNN 139
              +L++  N ++ L   DI  L+ LR+L ++ N +Q   +      F + L +L L +N
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ--YLDISVFKFNQELEYLDLSHN 79

Query: 140 LLDALP-GFLLSMPQLDTVYRHGNHNYFKS 168
            L  +     +++  LD      + N F +
Sbjct: 80  KLVKISCHPTVNLKHLDL-----SFNAFDA 104

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 59.9 bits (145), Expect = 8e-10
 Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 5/80 (6%)

Query: 66  LSLSYTPIGRRIFKC--DTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIP- 122
           L++S   +   IF+C    ++VL L SN + S+P  + +L  L+ L +  N L+  S+P 
Sbjct: 404 LNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK--SVPD 461

Query: 123 FTLTFCKNLTHLYLDNNLLD 142
                  +L  ++L  N  D
Sbjct: 462 GIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 55.3 bits (133), Expect = 2e-08
 Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 10/95 (10%)

Query: 84  EVLSLKSNSLTSLPPDIG---RLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNL 140
           E L L+ N L  L        ++ +L+ L ++ N +         ++ K+L  L + +N+
Sbjct: 351 ETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI 410

Query: 141 LDALPGFLLSMPQLDTVYRHGN------HNYFKST 169
           L       L  P++  +  H N          K  
Sbjct: 411 LTDTIFRCLP-PRIKVLDLHSNKIKSIPKQVVKLE 444

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 4/80 (5%)

Query: 84  EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDA 143
             L++ SN LT           ++VL L  N ++  SIP  +   + L  L + +N L +
Sbjct: 402 LSLNMSSNILTDTIFRCL-PPRIKVLDLHSNKIK--SIPKQVVKLEALQELNVASNQLKS 458

Query: 144 LP-GFLLSMPQLDTVYRHGN 162
           +P G    +  L  ++ H N
Sbjct: 459 VPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 51.4 bits (123), Expect = 3e-07
 Identities = 18/90 (20%), Positives = 27/90 (30%), Gaps = 7/90 (7%)

Query: 84  EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCK--NLTHLYLDNNLL 141
           E L L  N L  +        NL+ L L+ N     ++P    F     L  L L    L
Sbjct: 72  EYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFD--ALPICKEFGNMSQLKFLGLSTTHL 127

Query: 142 DALP-GFLLSMPQLDTVYRHGNHNYFKSTF 170
           +      +  +     +   G     K   
Sbjct: 128 EKSSVLPIAHLNISKVLLVLGETYGEKEDP 157

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.6 bits (113), Expect = 6e-06
 Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 9/87 (10%)

Query: 83  VEVLSLKSNSLTSLP-PDIGRLTNLRVLCLTDNCLQN--ASIPFTLTFCKNLTHLYLDNN 139
           + + +   +    +      +++    L  ++N L +        LT    L  L L  N
Sbjct: 302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLT---ELETLILQMN 358

Query: 140 LLDALP---GFLLSMPQLDTVYRHGNH 163
            L  L         M  L  +    N 
Sbjct: 359 QLKELSKIAEMTTQMKSLQQLDISQNS 385

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 13/87 (14%), Positives = 28/87 (32%), Gaps = 3/87 (3%)

Query: 79  KCDTVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLD 137
               + +  + S+        I    +N+ +   T +  +   +    +      HL   
Sbjct: 274 SLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-PSKISPFLHLDFS 332

Query: 138 NNLLDALP-GFLLSMPQLDTVYRHGNH 163
           NNLL          + +L+T+    N 
Sbjct: 333 NNLLTDTVFENCGHLTELETLILQMNQ 359

>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A {Rattus norvegicus} PDB: 2e30_A Length = 208

 Score = 59.4 bits (144), Expect = 2e-10
 Identities = 38/182 (20%), Positives = 70/182 (38%), Gaps = 30/182 (16%)

Query: 276 ARNGTIKTLDELSVIMRSLGMSPT-IAELKK---YLAEKG-GKLSFPDFLKVMHTHSKAE 330
           +R  T+   +EL  I +  G S + I  L      L +   G LS  DF ++        
Sbjct: 3   SRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPE--LAIN 60

Query: 331 DIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVD--------------- 375
            +   +++AF    +    +++F  F++ +      ED  K                   
Sbjct: 61  PLGDRIINAF---FSEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHF 117

Query: 376 AFKAADTTKSGTVPAKYLKHVLV-NWGEGLSSKE----VDQIFREANVTMNSKVRYEDFV 430
           AF+  D  K   +    L  VL    G  +S ++     D+  +EA+   +S + + +FV
Sbjct: 118 AFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFV 177

Query: 431 KI 432
           K+
Sbjct: 178 KV 179

>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A {Rattus norvegicus} PDB: 2e30_A Length = 208

 Score = 39.8 bits (93), Expect = 8e-04
 Identities = 20/113 (17%), Positives = 38/113 (33%), Gaps = 12/113 (10%)

Query: 258 VFTFKTPYLEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLA------EKG 311
            F+     + FR   F+          D       +          K + A      +K 
Sbjct: 70  FFSEGEDQVNFRG--FMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKD 127

Query: 312 GKLSFPDFLKVMHTHSKA---EDIPKEVVD-AFKAADTTKSGKLSFPDFLKVM 360
            K+S  + L+V+         ++    + D   + AD      +SF +F+KV+
Sbjct: 128 DKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVL 180

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 5/83 (6%)

Query: 84  EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPF-TLTFCKNLTHLYLDNNLL 141
             L L    L  L P +   L  L+ L L DN LQ  ++P  T     NLTHL+L  N +
Sbjct: 108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ--ALPDDTFRDLGNLTHLFLHGNRI 165

Query: 142 DALP-GFLLSMPQLDTVYRHGNH 163
            ++P      +  LD +  H N 
Sbjct: 166 SSVPERAFRGLHSLDRLLLHQNR 188

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 5/82 (6%)

Query: 84  EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP-FTLTFCKNLTHLYLDNNLL 141
             L L  N ++S+P      L +L  L L  N +    +          L  LYL  N L
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA--HVHPHAFRDLGRLMTLYLFANNL 213

Query: 142 DALP-GFLLSMPQLDTVYRHGN 162
            ALP   L  +  L  +  + N
Sbjct: 214 SALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 27/105 (25%), Positives = 39/105 (37%), Gaps = 8/105 (7%)

Query: 66  LSLSY---TPIGRRIFK-CDTVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNAS 120
           + L     + +    F+ C  + +L L SN L  +       L  L  L L+DN  Q  S
Sbjct: 37  IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA-QLRS 95

Query: 121 IPF-TLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGNH 163
           +   T      L  L+LD   L  L  G    +  L  +Y   N 
Sbjct: 96  VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA 140

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 4/61 (6%)

Query: 84  EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPF-TLTFCKNLTHLYLDNNLL 141
           + L L  N +  + P     L  L  L L  N L   ++P   L   + L +L L++N  
Sbjct: 180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS--ALPTEALAPLRALQYLRLNDNPW 237

Query: 142 D 142
            
Sbjct: 238 V 238

>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5 Length = 87

 Score = 56.0 bits (136), Expect = 2e-10
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 3/85 (3%)

Query: 348 SGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSK 407
           SG +   D  K M      E+I   + + FK  DT  SGT+    LK  L   G  L   
Sbjct: 3   SGHIDDDD--KHMAERLSEEEI-GGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMES 59

Query: 408 EVDQIFREANVTMNSKVRYEDFVKI 432
           E+  +   A++  +  + Y +F+  
Sbjct: 60  EIKDLMDAADIDKSGTIDYGEFIAA 84

>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5 Length = 87

 Score = 55.6 bits (135), Expect = 3e-10
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 7/63 (11%)

Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFL 320
             +E F +   +  GTI T DEL   ++ +G     +E+K  +      K G + + +F+
Sbjct: 24  GLKELFKMIDTDNSGTI-TFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFI 82

Query: 321 KVM 323
              
Sbjct: 83  AAT 85

>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max} Length = 92

 Score = 55.7 bits (135), Expect = 3e-10
 Identities = 26/66 (39%), Positives = 46/66 (69%)

Query: 367 EDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRY 426
            D  +E+ +AFK  D  ++G + A  L+HV++N GE L+ +EV+Q+ +EA++  + +V Y
Sbjct: 5   TDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNY 64

Query: 427 EDFVKI 432
           E+FVK+
Sbjct: 65  EEFVKM 70

>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max} Length = 92

 Score = 53.8 bits (130), Expect = 2e-09
 Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 9/84 (10%)

Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFL 320
           E +E F +F +  NG I +  EL  +M +LG   T  E+++ + E      G++++ +F+
Sbjct: 10  ELKEAFKVFDKDQNGYI-SASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYEEFV 68

Query: 321 KVMHTHSK--AEDIPKEVVDAFKA 342
           K+M T       +    +   F +
Sbjct: 69  KMMMTVRGGGGGNGWSRLRRKFSS 92

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 60.9 bits (148), Expect = 3e-10
 Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 9/111 (8%)

Query: 55  WIP-QYFSHAFLLSLSYTPIGRRIF-KCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLT 112
           W P   F+     +            +  T+  L   ++S+T +   I +LT L  L  T
Sbjct: 14  WFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG-IEKLTGLTKLICT 72

Query: 113 DNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
            N +   ++  +     NLT+L  D+N L  L   +  + +L  +    N 
Sbjct: 73  SNNIT--TLDLSQ--NTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNK 117

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 7/79 (8%)

Query: 84  EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDA 143
            +L  ++  +T L  D+ +   L  L L +  L    +   ++    L  L   N  +  
Sbjct: 300 YLLDCQAAGITEL--DLSQNPKLVYLYLNNTELT--ELD--VSHNTKLKSLSCVNAHIQD 353

Query: 144 LPGFLLSMPQLDTVYRHGN 162
               +  +P L+  +    
Sbjct: 354 FSS-VGKIPALNNNFEAEG 371

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 56.6 bits (137), Expect = 7e-09
 Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 8/88 (9%)

Query: 77  IFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL 136
           + +   +  L+  SN LT+L   +  LT L  L    N L    +  +      LT+L  
Sbjct: 81  LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLT--KLDVSQ--NPLLTYLNC 134

Query: 137 DNNLLDALPGFLLSMPQLDTVYRHGNHN 164
             N L  +   +    QL  +  H N  
Sbjct: 135 ARNTLTEID--VSHNTQLTELDCHLNKK 160

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 8/87 (9%)

Query: 77  IFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL 136
           +     +  L    N +T L  D+ +   L  L    N +    +         LT L  
Sbjct: 166 VTPQTQLTTLDCSFNKITEL--DVSQNKLLNRLNCDTNNIT--KLDLNQ--NIQLTFLDC 219

Query: 137 DNNLLDALPGFLLSMPQLDTVYRHGNH 163
            +N L  +   +  + QL       N 
Sbjct: 220 SSNKLTEID--VTPLTQLTYFDCSVNP 244

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 55.5 bits (134), Expect = 1e-08
 Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 8/87 (9%)

Query: 77  IFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL 136
           + +   +  L+  +N++T L  D+ +   L  L  + N L    I  T      LT+   
Sbjct: 187 VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLT--EIDVTP--LTQLTYFDC 240

Query: 137 DNNLLDALPGFLLSMPQLDTVYRHGNH 163
             N L  L   + ++ +L T++     
Sbjct: 241 SVNPLTELD--VSTLSKLTTLHCIQTD 265

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 53.5 bits (129), Expect = 7e-08
 Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 8/81 (9%)

Query: 84  EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDA 143
             L   SN LT +  D+  LT L     + N L    +  +      LT L+     L  
Sbjct: 215 TFLDCSSNKLTEI--DVTPLTQLTYFDCSVNPLT--ELDVST--LSKLTTLHCIQTDLLE 268

Query: 144 LPGFLLSMPQLDTVYRHGNHN 164
           +   L    QL      G   
Sbjct: 269 ID--LTHNTQLIYFQAEGCRK 287

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 17/119 (14%), Positives = 32/119 (26%), Gaps = 27/119 (22%)

Query: 66  LSLSYTPIGR-RIFKCDTVEVLSLKSNSLTSLP--------------------PDIGRLT 104
              S  P+    +     +  L      L  +                      D+   T
Sbjct: 238 FDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNT 297

Query: 105 NLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
            L +L      +    +  +      L +LYL+N  L  L   +    +L ++     H
Sbjct: 298 QLYLLDCQAAGIT--ELDLS--QNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAH 350

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 5/78 (6%)

Query: 77  IFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL 136
           + +   +  L L +  LT L  D+   T L+ L   +  +Q      ++     L + + 
Sbjct: 314 LSQNPKLVYLYLNNTELTEL--DVSHNTKLKSLSCVNAHIQ--DFS-SVGKIPALNNNFE 368

Query: 137 DNNLLDALPGFLLSMPQL 154
                  +P   L+   L
Sbjct: 369 AEGQTITMPKETLTNNSL 386

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 18/98 (18%), Positives = 31/98 (31%), Gaps = 8/98 (8%)

Query: 66  LSLSYTPIGR-RIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFT 124
           L+ +   +    +     +  L    N   +   D+   T L  L  + N +        
Sbjct: 132 LNCARNTLTEIDVSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKITE----LD 186

Query: 125 LTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGN 162
           ++  K L  L  D N +  L   L    QL  +    N
Sbjct: 187 VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSN 222

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 60.2 bits (146), Expect = 4e-10
 Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 6/86 (6%)

Query: 82  TVEVLSLKSNSLTSLPPDI--GRLTNLRVLCLTDNCLQNASIP-FTLTFCKNLTHLYLDN 138
              +L L  N+L+ L  +    RLTNL  L L+ N L    I         NL +L L +
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN--FISSEAFVPVPNLRYLDLSS 97

Query: 139 NLLDALP-GFLLSMPQLDTVYRHGNH 163
           N L  L       +  L+ +  + NH
Sbjct: 98  NHLHTLDEFLFSDLQALEVLLLYNNH 123

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 55.2 bits (133), Expect = 1e-08
 Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 5/83 (6%)

Query: 84  EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP-FTLTFCKNLTHLYLDNNLL 141
             L L  N L  +  +    + NLR L L+ N L   ++  F  +  + L  L L NN +
Sbjct: 67  HSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH--TLDEFLFSDLQALEVLLLYNNHI 124

Query: 142 DALPGFLLS-MPQLDTVYRHGNH 163
             +       M QL  +Y   N 
Sbjct: 125 VVVDRNAFEDMAQLQKLYLSQNQ 147

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 55.2 bits (133), Expect = 1e-08
 Identities = 27/109 (24%), Positives = 38/109 (34%), Gaps = 14/109 (12%)

Query: 66  LSLSY---TPIGRRIF-KCDTVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNAS 120
           L LS+     I    F     +  L L SN L +L   +   L  L VL L +N +    
Sbjct: 69  LLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV--V 126

Query: 121 IPFTLTFCK--NLTHLYLDNNLLDALP----GFLLSMPQLDTVYRHGNH 163
           +     F     L  LYL  N +   P         +P+L  +    N 
Sbjct: 127 VD-RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK 174

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 10/87 (11%)

Query: 84  EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---FT-LTFCKNLTHLYLDN 138
           EVL L +N +  +  +    +  L+ L L+ N +     P            L  L L +
Sbjct: 115 EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS--RFPVELIKDGNKLPKLMLLDLSS 172

Query: 139 NLLDALP-GFLLSMPQL--DTVYRHGN 162
           N L  LP   L  +P    + +Y H N
Sbjct: 173 NKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 8/87 (9%)

Query: 80  CDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFC--KNLTHLYLD 137
           C +  + S     L ++P  +   +   +L L+ N L    +    T     NL  L L 
Sbjct: 18  CASNIL-SCSKQQLPNVPQSL--PSYTALLDLSHNNLS--RLRAEWTPTRLTNLHSLLLS 72

Query: 138 NNLLDALP-GFLLSMPQLDTVYRHGNH 163
           +N L+ +     + +P L  +    NH
Sbjct: 73  HNHLNFISSEAFVPVPNLRYLDLSSNH 99

>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A Length = 86

 Score = 55.3 bits (134), Expect = 4e-10
 Identities = 22/113 (19%), Positives = 35/113 (30%), Gaps = 40/113 (35%)

Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           +    F  F  N  G I +  EL   +++LG   T  E+++ +AE               
Sbjct: 12  DRERIFKRFDTNGDGKI-SSSELGDALKTLGS-VTPDEVRRMMAE--------------- 54

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAF 377
                              DT   G +SF +F            + K+V   F
Sbjct: 55  ------------------IDTDGDGFISFDEFTDFA---RANRGLVKDVSKIF 86

>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A Length = 86

 Score = 40.7 bits (96), Expect = 5e-05
 Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 2/73 (2%)

Query: 360 MHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVT 419
           M      +DI  +    FK  DT   G + +  L   L   G  ++  EV ++  E +  
Sbjct: 1   MAAEDTPQDI-ADRERIFKRFDTNGDGKISSSELGDALKTLGS-VTPDEVRRMMAEIDTD 58

Query: 420 MNSKVRYEDFVKI 432
            +  + +++F   
Sbjct: 59  GDGFISFDEFTDF 71

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 59.5 bits (145), Expect = 5e-10
 Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 7/100 (7%)

Query: 66  LSLSYTPIGR--RIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPF 123
           LSL+Y  I     +    ++   +   N +T + P +  +T L  L + +N +    +  
Sbjct: 182 LSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKIT--DLSP 238

Query: 124 TLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
            L     LT L +  N +  +      + +L  +    N 
Sbjct: 239 -LANLSQLTWLEIGTNQISDINAV-KDLTKLKMLNVGSNQ 276

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 58.3 bits (142), Expect = 1e-09
 Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 6/100 (6%)

Query: 66  LSLSYTPIGR--RIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPF 123
           L+L+   I     +     +  L + +N +T +   +  LTNLR L L ++ +    I  
Sbjct: 71  LNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA-LQNLTNLRELYLNEDNIS--DISP 127

Query: 124 TLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
            L     +  L L  N   +    L +M  L+ +    + 
Sbjct: 128 -LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK 166

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.2 bits (139), Expect = 3e-09
 Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 9/101 (8%)

Query: 66  LSLSYTPIGRRIFK---CDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIP 122
           L+    PI + IF            L+  S+T +      L ++  L +    +   SI 
Sbjct: 5   LATLPAPINQ-IFPDADLAEGIRAVLQKASVTDVVT-QEELESITKLVVAGEKVA--SIQ 60

Query: 123 FTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
             + +  NL +L L+ N +  +   L ++ +L  +Y   N 
Sbjct: 61  G-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK 99

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.2 bits (139), Expect = 4e-09
 Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 3/80 (3%)

Query: 84  EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDA 143
           ++L++ SN ++ +   +  L+ L  L L +N L N      +    NLT L+L  N +  
Sbjct: 268 KMLNVGSNQISDISV-LNNLSQLNSLFLNNNQLGN-EDMEVIGGLTNLTTLFLSQNHITD 325

Query: 144 LPGFLLSMPQLDTVYRHGNH 163
           +   L S+ ++D+       
Sbjct: 326 IRP-LASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.8 bits (138), Expect = 5e-09
 Identities = 16/80 (20%), Positives = 35/80 (43%), Gaps = 4/80 (5%)

Query: 84  EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDA 143
             L+L +N   S    +  +T L  L +T++ +++ +    +    +L  L L+ N ++ 
Sbjct: 135 YSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVT---PIANLTDLYSLSLNYNQIED 191

Query: 144 LPGFLLSMPQLDTVYRHGNH 163
           +   L S+  L     + N 
Sbjct: 192 ISP-LASLTSLHYFTAYVNQ 210

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 55.6 bits (135), Expect = 9e-09
 Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 5/79 (6%)

Query: 84  EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDA 143
             L + +N +T L P +  L+ L  L +  N +    I   +     L  L + +N +  
Sbjct: 224 NSLKIGNNKITDLSP-LANLSQLTWLEIGTNQIS--DIN-AVKDLTKLKMLNVGSNQISD 279

Query: 144 LPGFLLSMPQLDTVYRHGN 162
           +     ++ QL++++ + N
Sbjct: 280 ISVL-NNLSQLNSLFLNNN 297

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 53.7 bits (130), Expect = 4e-08
 Identities = 18/101 (17%), Positives = 40/101 (39%), Gaps = 8/101 (7%)

Query: 66  LSLSYTPIGRRI---FKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIP 122
           L+L        +        +  L++  + +  + P I  LT+L  L L  N +++ S  
Sbjct: 137 LNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDIS-- 193

Query: 123 FTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
             L    +L +     N +  +   + +M +L+++    N 
Sbjct: 194 -PLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNK 232

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.1 bits (118), Expect = 1e-06
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 4/59 (6%)

Query: 84  EVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLL 141
             L L +N L +   + IG LTNL  L L+ N + +      L     +      N ++
Sbjct: 290 NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR---PLASLSKMDSADFANQVI 345

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 59.7 bits (145), Expect = 5e-10
 Identities = 32/145 (22%), Positives = 51/145 (35%), Gaps = 16/145 (11%)

Query: 33  STPQTACQRNCSLEVGGICS-----HIWIPQY-FSHAFLLSLSY---TPIGRRIF-KCDT 82
           S  +++ Q + S +  GIC         IP         L LS    T I      +C  
Sbjct: 18  SKEESSNQASLSCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVN 77

Query: 83  VEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP-FTLTFCKNLTHLYLDNNL 140
           ++ L L SN + ++  D    L +L  L L+ N L   ++         +LT L L  N 
Sbjct: 78  LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS--NLSSSWFKPLSSLTFLNLLGNP 135

Query: 141 LDALP--GFLLSMPQLDTVYRHGNH 163
              L        + +L  +      
Sbjct: 136 YKTLGETSLFSHLTKLQILRVGNMD 160

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 52.8 bits (127), Expect = 8e-08
 Identities = 12/88 (13%), Positives = 25/88 (28%), Gaps = 8/88 (9%)

Query: 84  EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQN------ASIPF-TLTFCKNLTHLY 135
             L L       L        +++  L L D  L        ++    +L       ++ 
Sbjct: 201 SHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK 260

Query: 136 LDNNLLDALPGFLLSMPQLDTVYRHGNH 163
           + +  L  +   L  +  L  +    N 
Sbjct: 261 ITDESLFQVMKLLNQISGLLELEFSRNQ 288

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 51.7 bits (124), Expect = 2e-07
 Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 3/78 (3%)

Query: 88  LKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALP- 145
              ++ T +       LT L  L +  + LQ+   P +L   +N++HL L       L  
Sbjct: 157 GNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE-PKSLKSIQNVSHLILHMKQHILLLE 215

Query: 146 GFLLSMPQLDTVYRHGNH 163
            F+     ++ +      
Sbjct: 216 IFVDVTSSVECLELRDTD 233

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 7/82 (8%)

Query: 86  LSLKSNSLTSLPPDI----GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLL 141
             L +   + L         +    R + +TD  L    +   L     L  L    N L
Sbjct: 232 TDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF--QVMKLLNQISGLLELEFSRNQL 289

Query: 142 DALP-GFLLSMPQLDTVYRHGN 162
            ++P G    +  L  ++ H N
Sbjct: 290 KSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 86  LSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIP-FTLTFCKNLTHLYLDNNLLD 142
           + +   SL  +   + +++ L  L  + N L+  S+P        +L  ++L  N  D
Sbjct: 259 VKITDESLFQVMKLLNQISGLLELEFSRNQLK--SVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 7/79 (8%)

Query: 71  TPIGRRIF-KCDTVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFC 128
           T I R+ F     +E L + ++ L S  P     + N+  L L         +   +   
Sbjct: 163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI--LLL-EIFVD 219

Query: 129 K--NLTHLYLDNNLLDALP 145
              ++  L L +  LD   
Sbjct: 220 VTSSVECLELRDTDLDTFH 238

>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase activating protein, GCAP, GCAP3, GCAP-3, lyase activator; 3.00A {Homo sapiens} Length = 211

 Score = 57.9 bits (140), Expect = 6e-10
 Identities = 18/128 (14%), Positives = 50/128 (39%), Gaps = 7/128 (5%)

Query: 312 GKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPK 371
           G  +  +F  ++      +   K +   +   DT K G + F +F+  ++   + +   K
Sbjct: 35  GLQTLHEFKTLLGLQGLNQKANKHIDQVYNTFDTNKDGFVDFLEFIAAVNLIMQEKMEQK 94

Query: 372 EVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKE------VDQIFREANVTMNSKVR 425
            +   FK  D   +G++    L  + +        +       ++ +F + ++  + ++ 
Sbjct: 95  -LKWYFKLYDADGNGSIDKNELLDMFMAVQALNGQQTLSPEEFINLVFHKIDINNDGELT 153

Query: 426 YEDFVKIA 433
            E+F+   
Sbjct: 154 LEEFINGM 161

>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein, solution structure, backbone dynamic, structural genomics; NMR {Homo sapiens} Length = 71

 Score = 54.0 bits (131), Expect = 7e-10
 Identities = 19/67 (28%), Positives = 36/67 (53%)

Query: 366 AEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVR 425
           A    +++  AF+A D    G +    L+  +   G+ L  +E+D + REA+V  + +V 
Sbjct: 1   ARAGLEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVN 60

Query: 426 YEDFVKI 432
           YE+F ++
Sbjct: 61  YEEFARM 67

>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein, solution structure, backbone dynamic, structural genomics; NMR {Homo sapiens} Length = 71

 Score = 48.3 bits (116), Expect = 8e-08
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 7/63 (11%)

Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFL 320
           + +  F  F +  +G I T+DEL   M  LG      EL   + E    + G++++ +F 
Sbjct: 7   DLQVAFRAFDQDGDGHI-TVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNYEEFA 65

Query: 321 KVM 323
           +++
Sbjct: 66  RML 68

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 58.5 bits (142), Expect = 8e-10
 Identities = 32/85 (37%), Positives = 39/85 (45%), Gaps = 11/85 (12%)

Query: 84  EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---FT-LTFCKNLTHLYLDN 138
             L L  N L SLPP +   LT L  L L  N LQ  S+P   F  LT   +L  L L N
Sbjct: 112 AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ--SLPKGVFDKLT---SLKELRLYN 166

Query: 139 NLLDALP-GFLLSMPQLDTVYRHGN 162
           N L  +P G    + +L T+    N
Sbjct: 167 NQLKRVPEGAFDKLTELKTLKLDNN 191

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 11/85 (12%)

Query: 84  EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---FT-LTFCKNLTHLYLDN 138
           E L +  N L +LP  +  +L NL  L L  N L+  S+P   F  LT    LT+L L  
Sbjct: 88  ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK--SLPPRVFDSLT---KLTYLSLGY 142

Query: 139 NLLDALP-GFLLSMPQLDTVYRHGN 162
           N L +LP G    +  L  +  + N
Sbjct: 143 NELQSLPKGVFDKLTSLKELRLYNN 167

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 31/85 (36%), Positives = 40/85 (47%), Gaps = 11/85 (12%)

Query: 84  EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---FT-LTFCKNLTHLYLDN 138
            +L L  N L +LP  I   L NL  L +TDN LQ  ++P   F  L    NL  L LD 
Sbjct: 64  RLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ--ALPIGVFDQLV---NLAELRLDR 118

Query: 139 NLLDALP-GFLLSMPQLDTVYRHGN 162
           N L +LP     S+ +L  +    N
Sbjct: 119 NQLKSLPPRVFDSLTKLTYLSLGYN 143

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 11/83 (13%)

Query: 86  LSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---FT-LTFCKNLTHLYLDNNL 140
           LSL  N L SLP  +  +LT+L+ L L +N L+   +P   F  LT    L  L LDNN 
Sbjct: 138 LSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK--RVPEGAFDKLT---ELKTLKLDNNQ 192

Query: 141 LDALP-GFLLSMPQLDTVYRHGN 162
           L  +P G   S+ +L  +    N
Sbjct: 193 LKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 86  LSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPF-TLTFCKNLTHLYLDNNLLD 142
           L L +N L  +P     +LT L+ L L +N L+   +P       + L  L L  N  D
Sbjct: 162 LRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK--RVPEGAFDSLEKLKMLQLQENPWD 218

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 13/89 (14%)

Query: 80  CDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFT----LTFCKNLTHLY 135
            +   V    S  LT++P +I    + + L L  N L   S+P      LT    L  LY
Sbjct: 16  NNKNSV-DCSSKKLTAIPSNI--PADTKKLDLQSNKLS--SLPSKAFHRLT---KLRLLY 67

Query: 136 LDNNLLDALP-GFLLSMPQLDTVYRHGNH 163
           L++N L  LP G    +  L+T++   N 
Sbjct: 68  LNDNKLQTLPAGIFKELKNLETLWVTDNK 96

>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5 Length = 67

 Score = 53.3 bits (129), Expect = 1e-09
 Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 7/63 (11%)

Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFL 320
             +  F  F +N  G + +LDE   +  +     T  ++ K+  E      G+L+  +F 
Sbjct: 2   SAKRVFEKFDKNKDGKL-SLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFT 60

Query: 321 KVM 323
             +
Sbjct: 61  SCI 63

>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5 Length = 67

 Score = 49.0 bits (118), Expect = 4e-08
 Identities = 10/61 (16%), Positives = 25/61 (40%)

Query: 372 EVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVK 431
                F+  D  K G +     + V + +    + +++ + F E +V  N ++  ++F  
Sbjct: 2   SAKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTS 61

Query: 432 I 432
            
Sbjct: 62  C 62

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.0 bits (138), Expect = 1e-09
 Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 11/88 (12%)

Query: 82  TVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---FT-LTFCKNLTHLYL 136
           T+  + L+ N++  +PP        LR + L++N +    +    F  L    +L  L L
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS--ELAPDAFQGLR---SLNSLVL 87

Query: 137 DNNLLDALP-GFLLSMPQLDTVYRHGNH 163
             N +  LP      +  L  +  + N 
Sbjct: 88  YGNKITELPKSLFEGLFSLQLLLLNANK 115

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.0 bits (138), Expect = 1e-09
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 11/83 (13%)

Query: 86  LSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---F-TLTFCKNLTHLYLDNNL 140
           L L  N +T LP  +   L +L++L L  N +    +    F  L    NL  L L +N 
Sbjct: 85  LVLYGNKITELPKSLFEGLFSLQLLLLNANKIN--CLRVDAFQDLH---NLNLLSLYDNK 139

Query: 141 LDALP-GFLLSMPQLDTVYRHGN 162
           L  +  G    +  + T++   N
Sbjct: 140 LQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.0 bits (125), Expect = 6e-08
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 11/83 (13%)

Query: 86  LSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---FT-LTFCKNLTHLYLDNNL 140
           + L +N ++ L PD    L +L  L L  N +    +P   F  L    +L  L L+ N 
Sbjct: 61  IDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT--ELPKSLFEGLF---SLQLLLLNANK 115

Query: 141 LDALP-GFLLSMPQLDTVYRHGN 162
           ++ L       +  L+ +  + N
Sbjct: 116 INCLRVDAFQDLHNLNLLSLYDN 138

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 86  LSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPF-TLTFCKNLTHLYLDNNLLD 142
           L L +N +  L  D    L NL +L L DN LQ  +I   T +  + +  ++L  N   
Sbjct: 109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ--TIAKGTFSPLRAIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 6/75 (8%)

Query: 90  SNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFT-LTFCKNLTHLYLDNNLLDALP-GF 147
              LT +P ++     +  + L  N ++   IP    +  K L  + L NN +  L    
Sbjct: 20  GKGLTEIPTNL--PETITEIRLEQNTIK--VIPPGAFSPYKKLRRIDLSNNQISELAPDA 75

Query: 148 LLSMPQLDTVYRHGN 162
              +  L+++  +GN
Sbjct: 76  FQGLRSLNSLVLYGN 90

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 11/87 (12%)

Query: 82  TVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---FT-LTFCKNLTHLYL 136
            +  L L +N L SLP  +   LT L  L L  N L+  S+P   F  LT    L  L L
Sbjct: 84  ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK--SLPSGVFDRLT---KLKELRL 138

Query: 137 DNNLLDALP-GFLLSMPQLDTVYRHGN 162
           + N L ++P G    +  L T+    N
Sbjct: 139 NTNQLQSIPAGAFDKLTNLQTLSLSTN 165

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 34/83 (40%), Positives = 41/83 (49%), Gaps = 11/83 (13%)

Query: 86  LSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---FT-LTFCKNLTHLYLDNNL 140
           L L  N L SLP  +  RLT L+ L L  N LQ  SIP   F  LT   NL  L L  N 
Sbjct: 112 LYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ--SIPAGAFDKLT---NLQTLSLSTNQ 166

Query: 141 LDALP-GFLLSMPQLDTVYRHGN 162
           L ++P G    + +L T+   GN
Sbjct: 167 LQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 34/86 (39%), Positives = 40/86 (46%), Gaps = 8/86 (9%)

Query: 81  DTVEVLSLKSNSLTSLPP-DIGRLTNLRVLCLTDNCLQN--ASIPFTLTFCKNLTHLYLD 137
           DT E L L+S  L +L       LT L  L L  N LQ   A +   LT    L  L L 
Sbjct: 36  DT-EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT---ELGTLGLA 91

Query: 138 NNLLDALP-GFLLSMPQLDTVYRHGN 162
           NN L +LP G    + QLD +Y  GN
Sbjct: 92  NNQLASLPLGVFDHLTQLDKLYLGGN 117

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 45.8 bits (109), Expect = 8e-06
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 86  LSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPF-TLTFCKNLTHLYLDNNLLD 142
           L L +N L S+P     +LTNL+ L L+ N LQ  S+P         L  + L  N  D
Sbjct: 136 LRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ--SVPHGAFDRLGKLQTITLFGNQFD 192

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 57.0 bits (138), Expect = 1e-09
 Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 11/86 (12%)

Query: 83  VEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---FT-LTFCKNLTHLYLD 137
           V  + L SN L ++   +   L +L+ L L  N +    +    F  L+   ++  L L 
Sbjct: 83  VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT--CVGNDSFIGLS---SVRLLSLY 137

Query: 138 NNLLDALP-GFLLSMPQLDTVYRHGN 162
           +N +  +  G   ++  L T+    N
Sbjct: 138 DNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 12/89 (13%)

Query: 82  TVEVLSLKSNSLTSLPPDIG--RLTNLRVLCLTDNCLQNASIP---FT-LTFCKNLTHLY 135
               L L +N  T L       +L  LR +  ++N +    I    F   +    +  + 
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT--DIEEGAFEGAS---GVNEIL 87

Query: 136 LDNNLLDALP-GFLLSMPQLDTVYRHGNH 163
           L +N L+ +       +  L T+    N 
Sbjct: 88  LTSNRLENVQHKMFKGLESLKTLMLRSNR 116

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.4 bits (126), Expect = 6e-08
 Identities = 13/83 (15%), Positives = 33/83 (39%), Gaps = 11/83 (13%)

Query: 86  LSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---FT-LTFCKNLTHLYLDNNL 140
           ++  +N +T +        + +  + LT N L+  ++    F  L    +L  L L +N 
Sbjct: 62  INFSNNKITDIEEGAFEGASGVNEILLTSNRLE--NVQHKMFKGLE---SLKTLMLRSNR 116

Query: 141 LDALP-GFLLSMPQLDTVYRHGN 162
           +  +     + +  +  +  + N
Sbjct: 117 ITCVGNDSFIGLSSVRLLSLYDN 139

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 84  EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPF-TLTFCKNLTHLYLDNNLL 141
           + L L+SN +T +  D    L+++R+L L DN +   ++         +L+ L L  N  
Sbjct: 108 KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT--TVAPGAFDTLHSLSTLNLLANPF 165

Query: 142 D 142
           +
Sbjct: 166 N 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 7/76 (9%)

Query: 90  SNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCK--NLTHLYLDNNLLDALP-G 146
           +  L  +P  I        L L +N      +  T  F K   L  +   NN +  +  G
Sbjct: 20  NQKLNKIPEHIP--QYTAELRLNNNEFT--VLEATGIFKKLPQLRKINFSNNKITDIEEG 75

Query: 147 FLLSMPQLDTVYRHGN 162
                  ++ +    N
Sbjct: 76  AFEGASGVNEILLTSN 91

>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate cyclase activating protein, GCAP1, GCAP-1, calcium, lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus} Length = 198

 Score = 56.3 bits (136), Expect = 2e-09
 Identities = 23/147 (15%), Positives = 61/147 (41%), Gaps = 13/147 (8%)

Query: 299 TIAELKKYLAE-----KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSF 353
           +  E  ++  +       G+L+  +F +     + +    K V   F+  D  K G + F
Sbjct: 12  SATECHQWYKKFMTECPSGQLTLYEFKQFFGLKNLSPSANKYVEQMFETFDFNKDGYIDF 71

Query: 354 PDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN------WGEGLSSK 407
            +++  +    K +   K +   FK  D   +G +    L +++          E ++++
Sbjct: 72  MEYVAALSLVLKGKVDQK-LRWYFKLYDVDGNGCIDRGELLNIIKAIRAINRCNEAMTAE 130

Query: 408 E-VDQIFREANVTMNSKVRYEDFVKIA 433
           E  + +F + ++  + ++  E+F++  
Sbjct: 131 EFTNMVFDKIDINGDGELSLEEFMEGV 157

>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate cyclase activating protein, GCAP1, GCAP-1, calcium, lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus} Length = 198

 Score = 45.5 bits (108), Expect = 9e-06
 Identities = 18/144 (12%), Positives = 40/144 (27%), Gaps = 48/144 (33%)

Query: 267 EFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYL-----AEKGGKLSFPDFLK 321
           ++ + F     +G + TL E         +SP+  +  + +       K G + F +++ 
Sbjct: 18  QWYKKFMTECPSGQL-TLYEFKQFFGLKNLSPSANKYVEQMFETFDFNKDGYIDFMEYVA 76

Query: 322 VMHTHSKA-----------------------------------------EDIPKEVVDA- 339
            +    K                                              +E  +  
Sbjct: 77  ALSLVLKGKVDQKLRWYFKLYDVDGNGCIDRGELLNIIKAIRAINRCNEAMTAEEFTNMV 136

Query: 340 FKAADTTKSGKLSFPDFLKVMHTH 363
           F   D    G+LS  +F++ +   
Sbjct: 137 FDKIDINGDGELSLEEFMEGVQKD 160

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.7 bits (141), Expect = 2e-09
 Identities = 78/516 (15%), Positives = 140/516 (27%), Gaps = 176/516 (34%)

Query: 3   DPAKNNEGFQATRNKQGVGFSRRSSFKNKNST-PQTACQ-RNCSLEV-----------GG 49
            P+     +   R++    ++    F   N +  Q   + R   LE+            G
Sbjct: 104 QPSMMTRMYIEQRDRL---YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160

Query: 50  I---------CSHIWIPQYFS-HAFLLSLSYTPIGRRIFKCDTVEVLSLKSNSL-TSLPP 98
                     C    +        F L+L           C++ E +      L   + P
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLK---------NCNSPETVLEMLQKLLYQIDP 211

Query: 99  DIGRLTNLRVLCLTDNCLQNASIPFTLTFCKN-LTHLYLDNNLLDALPGFLLSMPQLDTV 157
           +            T     +++I   +   +  L  L       + L   L+    L  V
Sbjct: 212 N-----------WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL---LV----LLNV 253

Query: 158 YRHGNHNYFKSTFMWYHSDIHARIRSTSTRD----EVLRKQKKLHQPS------------ 201
                 N F         ++  +I  T TR     + L      H               
Sbjct: 254 QNAKAWNAF---------NLSCKILLT-TRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303

Query: 202 ----------RLQDLAVQSVIASKENFFEPGLFPGPLVDYIAREYNQYHVCHYCNSAEPL 251
                     R QDL  +       N     +    + D +A  ++ +   H   + + L
Sbjct: 304 KSLLLKYLDCRPQDLPRE---VLTTNPRRLSIIAESIRDGLAT-WDNWK--HV--NCDKL 355

Query: 252 DR---SGYKVFTFKTPYLEFRECF---FLFARNGTI--KTL---------DELSVIMRSL 294
                S   V     P  E+R+ F    +F  +  I    L          ++ V++  L
Sbjct: 356 TTIIESSLNVLE---PA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411

Query: 295 GMSPTIAELKKYLAEKGGK---LSFPDFLKVMHTHSKAEDIP---KEVVDAFKAADTTKS 348
                    K  L EK  K   +S P     +    K E+     + +VD +    T  S
Sbjct: 412 --------HKYSLVEKQPKESTISIPSIY--LELKVKLENEYALHRSIVDHYNIPKTFDS 461

Query: 349 GKLSFP--D---FLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEG 403
             L  P  D   +  + H H K  +   E +  F              +L      +   
Sbjct: 462 DDLIPPYLDQYFYSHIGH-HLKNIE-HPERMTLF-----------RMVFLD---FRF--- 502

Query: 404 LSSKEVDQIFREANVTMNSKVRYEDFVKIACAPVPD 439
                           +  K+R++     A   + +
Sbjct: 503 ----------------LEQKIRHDSTAWNASGSILN 522

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 4e-08
 Identities = 58/326 (17%), Positives = 105/326 (32%), Gaps = 106/326 (32%)

Query: 62  HAFLLSLSYTPIGRRI------------FKCDTVEVLSLKSNSLTSLPPDIGR--LTNLR 107
           +   LS+    I   I              CD +   ++  +SL  L P   R     L 
Sbjct: 326 NPRRLSI----IAESIRDGLATWDNWKHVNCDKLT--TIIESSLNVLEPAEYRKMFDRLS 379

Query: 108 VLCLTDNCLQNASIPFTLTFCKNLTHLYLDN------NLLDALPGFLLSMPQLDTVYRHG 161
           V         +A IP  L     L+ ++ D        +++ L  + L       V +  
Sbjct: 380 VF------PPSAHIPTIL-----LSLIWFDVIKSDVMVVVNKLHKYSL-------VEKQP 421

Query: 162 NHNYFKSTFMWYHSDIHARIRSTSTRDEVLRKQKKLHQPSRLQDLAVQSVIAS---KENF 218
             +            I+  ++        L  +  LH+          S++      + F
Sbjct: 422 KESTIS-----IP-SIYLELKVK------LENEYALHR----------SIVDHYNIPKTF 459

Query: 219 FEPGLFPGPLVDYIAREYNQYHVCHYCNSAEPLDRSGYKVFTFKTPYLEFRECFFLFARN 278
               L P  L  Y    Y+  H+ H+  + E  +    ++  F+  +L+FR   FL    
Sbjct: 460 DSDDLIPPYLDQYF---YS--HIGHHLKNIEHPE----RMTLFRMVFLDFR---FLEQ-- 505

Query: 279 GTIKTLDELSVIMRSLGMSPTIAELKKY---LAEKGGKL-----SFPDFLKVMHTH---S 327
              K   + +    S  +  T+ +LK Y   + +   K      +  DFL  +  +   S
Sbjct: 506 ---KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICS 562

Query: 328 KAEDI-------PKEVV--DAFKAAD 344
           K  D+         E +  +A K   
Sbjct: 563 KYTDLLRIALMAEDEAIFEEAHKQVQ 588

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 6/84 (7%)

Query: 66  LSLSYTPIGRRIFKCD--TVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPF 123
             L  T +   + + D   V  L      + S+   +  L NL  +  ++N L +  I  
Sbjct: 29  TVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTD--ITP 85

Query: 124 TLTFCKNLTHLYLDNNLLDALPGF 147
            L     L  + ++NN +  +   
Sbjct: 86  -LKNLTKLVDILMNNNQIADITPL 108

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 8/99 (8%)

Query: 66  LSLSYTPIGRR--IFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPF 123
           + ++   I     +     +  L+L +N +T + P +  LTNL  L L+ N + + S   
Sbjct: 95  ILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDIS--- 150

Query: 124 TLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGN 162
            L+   +L  L   N + D  P  L ++  L+ +    N
Sbjct: 151 ALSGLTSLQQLSFGNQVTDLKP--LANLTTLERLDISSN 187

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 57.3 bits (139), Expect = 4e-09
 Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 7/100 (7%)

Query: 66  LSLSYTPIGR--RIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPF 123
           L L    I     +     +  L L  N L  + P I  L NL  L L  N + + S   
Sbjct: 270 LKLGANQISNISPLAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDIS--- 325

Query: 124 TLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
            ++    L  L+  NN +  +   L ++  ++ +    N 
Sbjct: 326 PVSSLTKLQRLFFYNNKVSDVSS-LANLTNINWLSAGHNQ 364

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 57.3 bits (139), Expect = 5e-09
 Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 7/100 (7%)

Query: 66  LSLSYTPIGR--RIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPF 123
           L +S   +     + K   +E L   +N ++ + P +G LTNL  L L  N L++  I  
Sbjct: 182 LDISSNKVSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD--IG- 237

Query: 124 TLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
           TL    NLT L L NN +  L   L  + +L  +    N 
Sbjct: 238 TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQ 276

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.7 bits (135), Expect = 1e-08
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 5/87 (5%)

Query: 77  IFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL 136
           +    T+E L + SN ++ +   + +LTNL  L  T+N +    I   L    NL  L L
Sbjct: 173 LANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQIS--DITP-LGILTNLDELSL 228

Query: 137 DNNLLDALPGFLLSMPQLDTVYRHGNH 163
           + N L  +     S+  L  +    N 
Sbjct: 229 NGNQLKDIGTL-ASLTNLTDLDLANNQ 254

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 5/87 (5%)

Query: 77  IFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL 136
           +     +  L L +N +++L P +  LT L  L L  N +   +I   L     LT+L L
Sbjct: 239 LASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQIS--NISP-LAGLTALTNLEL 294

Query: 137 DNNLLDALPGFLLSMPQLDTVYRHGNH 163
           + N L+ +   + ++  L  +  + N+
Sbjct: 295 NENQLEDISP-ISNLKNLTYLTLYFNN 320

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 5/80 (6%)

Query: 84  EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDA 143
             L+L  N+++ + P +  LT L+ L   +N + + S   +L    N+  L   +N +  
Sbjct: 312 TYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVS---SLANLTNINWLSAGHNQISD 367

Query: 144 LPGFLLSMPQLDTVYRHGNH 163
           L   L ++ ++  +  +   
Sbjct: 368 LTP-LANLTRITQLGLNDQA 386

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.1 bits (123), Expect = 4e-07
 Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 5/81 (6%)

Query: 83  VEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
                L   ++T        L  +  L      ++  SI   + +  NLT +   NN L 
Sbjct: 26  KMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIK--SIDG-VEYLNNLTQINFSNNQLT 81

Query: 143 ALPGFLLSMPQLDTVYRHGNH 163
            +   L ++ +L  +  + N 
Sbjct: 82  DITP-LKNLTKLVDILMNNNQ 101

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.0 bits (115), Expect = 4e-06
 Identities = 14/82 (17%), Positives = 26/82 (31%), Gaps = 4/82 (4%)

Query: 66  LSLSYTPIG--RRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPF 123
           LS  +  I     +     +  L L   + T+ P +     N+ +     N       P 
Sbjct: 358 LSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNY--KANVSIPNTVKNVTGALIAPA 415

Query: 124 TLTFCKNLTHLYLDNNLLDALP 145
           T++   + T   +  NL     
Sbjct: 416 TISDGGSYTEPDITWNLPSYTN 437

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 56.9 bits (138), Expect = 3e-09
 Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 11/88 (12%)

Query: 82  TVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---FT-LTFCKNLTHLYL 136
           + + L L  N L  L          L+VL L+   +Q  +I    +  L+   +L+ L L
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ--TIEDGAYQSLS---HLSTLIL 83

Query: 137 DNNLLDALP-GFLLSMPQLDTVYRHGNH 163
             N + +L  G    +  L  +     +
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETN 111

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 55.4 bits (134), Expect = 8e-09
 Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 10/103 (9%)

Query: 66  LSLSY---TPIGRRIF-KCDTVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNAS 120
           L L+      +    F    +++ L     +L SL     G L  L+ L +  N +Q  S
Sbjct: 81  LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ--S 138

Query: 121 IPFTLTFCK--NLTHLYLDNNLLDALP-GFLLSMPQLDTVYRH 160
                 F    NL HL L +N + ++    L  + Q+  +   
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 84  EVLSLKSNSLTSLPPDI-GRLTNLRV----LCLTDNCLQNASIPFTLTFCK-NLTHLYLD 137
           E L L SN + S+       L  + +    L L+ N +    I     F +  L  L LD
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN--FIQ-PGAFKEIRLKELALD 208

Query: 138 NNLLDALP-GFLLSMPQLDTVYRHGN 162
            N L ++P G    +  L  ++ H N
Sbjct: 209 TNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 86  LSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPF-TLTFCKNLTHLYLDNNLLD 142
           L L  N +  + P   +   L+ L L  N L+  S+P        +L  ++L  N  D
Sbjct: 182 LDLSLNPMNFIQPGAFKEIRLKELALDTNQLK--SVPDGIFDRLTSLQKIWLHTNPWD 237

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 57.8 bits (140), Expect = 3e-09
 Identities = 23/134 (17%), Positives = 49/134 (36%), Gaps = 4/134 (2%)

Query: 299 TIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLK 358
              EL +   E            + +  S  ED   ++       D   SG + + +F+ 
Sbjct: 349 DRDELVRGYHEFMRLKGVDSNSLIQNEGSTIED---QIDSLMPLLDMDGSGSIEYSEFIA 405

Query: 359 VMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANV 418
                +      + +  AFK  D   SG +  K L  +       +  +E++ I  + + 
Sbjct: 406 SAIDRTILLSRER-MERAFKMFDKDGSGKISTKELFKLFSQADSSIQMEELESIIEQVDN 464

Query: 419 TMNSKVRYEDFVKI 432
             + +V + +FV++
Sbjct: 465 NKDGEVDFNEFVEM 478

>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand, calcium-binding protein, guanylyl cyclase regulation, lyase; NMR {Bos taurus} SCOP: a.39.1.5 Length = 204

 Score = 55.2 bits (133), Expect = 4e-09
 Identities = 27/157 (17%), Positives = 64/157 (40%), Gaps = 24/157 (15%)

Query: 299 TIAELKKYLAE-----KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSF 353
             A+L+++  +       G L   +F +        E+  + V   F+A DT     + F
Sbjct: 20  DAAQLQEWYKKFLEECPSGTLFMHEFKRFFKVPDN-EEATQYVEAMFRAFDTNGDNTIDF 78

Query: 354 PDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN-------------- 399
            +++  ++   +   +  ++   FK  D  ++G +  + L  ++ +              
Sbjct: 79  LEYVAALNLVLRG-TLEHKLKWTFKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEA 137

Query: 400 --WGEGLSSKE-VDQIFREANVTMNSKVRYEDFVKIA 433
              G+ L+ +E VD+IF   +   + ++   +FV+ A
Sbjct: 138 EQQGKLLTPEEVVDRIFLLVDENGDGQLSLNEFVEGA 174

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 57.1 bits (138), Expect = 4e-09
 Identities = 27/105 (25%), Positives = 38/105 (36%), Gaps = 10/105 (9%)

Query: 66  LSLSYTPIGR---RIFK-CDTVEVLSLKS-NSLTSLPPDI-GRLTNLRVLCLTDNCLQNA 119
           L L   PI       F    ++  L L     L+ +       L+NLR L L    L+  
Sbjct: 141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-- 198

Query: 120 SIPFTLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGNH 163
            IP  LT    L  L L  N L A+  G    +  L  ++   + 
Sbjct: 199 EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ 242

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 4/82 (4%)

Query: 84  EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTD-NCLQNASIPFTLTFCKNLTHLYLDNNLL 141
           + L L++N + S+P     R+ +LR L L +   L   S         NL +L L    L
Sbjct: 139 KELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS-EGAFEGLSNLRYLNLAMCNL 197

Query: 142 DALPGFLLSMPQLDTVYRHGNH 163
             +P     + +LD +   GNH
Sbjct: 198 REIPNL-TPLIKLDELDLSGNH 218

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 5/82 (6%)

Query: 84  EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP-FTLTFCKNLTHLYLDNNLL 141
           + L L  N L+++ P     L +L+ L +  + +Q   I        ++L  + L +N L
Sbjct: 210 DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ--VIERNAFDNLQSLVEINLAHNNL 267

Query: 142 DALP-GFLLSMPQLDTVYRHGN 162
             LP      +  L+ ++ H N
Sbjct: 268 TLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 5/74 (6%)

Query: 84  EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPF-TLTFCKNLTHLYLDNNLL 141
           E+L L  N + ++       L NL  L L DN L   +IP     +   L  L+L NN +
Sbjct: 91  EILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT--TIPNGAFVYLSKLKELWLRNNPI 148

Query: 142 DALPGFLLS-MPQL 154
           +++P +  + +P L
Sbjct: 149 ESIPSYAFNRIPSL 162

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.4 bits (105), Expect = 5e-05
 Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 8/83 (9%)

Query: 66  LSLSYTPI---GRRIFK-CDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNAS 120
           L LS   +       F+    ++ L +  + +  +  +    L +L  + L  N L    
Sbjct: 212 LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT--L 269

Query: 121 IPF-TLTFCKNLTHLYLDNNLLD 142
           +P    T   +L  ++L +N  +
Sbjct: 270 LPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 43.6 bits (103), Expect = 8e-05
 Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 5/88 (5%)

Query: 78  FKCD-TVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL 136
             C      +     +L  +P  I   TN R+L L +N +Q      +    ++L  L L
Sbjct: 39  CSCSNQFSKVICVRKNLREVPDGI--STNTRLLNLHENQIQIIK-VNSFKHLRHLEILQL 95

Query: 137 DNNLLDALP-GFLLSMPQLDTVYRHGNH 163
             N +  +  G    +  L+T+    N 
Sbjct: 96  SRNHIRTIEIGAFNGLANLNTLELFDNR 123

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 55.5 bits (134), Expect = 4e-09
 Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 11/85 (12%)

Query: 84  EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---F-TLTFCKNLTHLYLDN 138
             L+L +N L SLP  +  +LT L+ L L  N LQ  S+P   F  LT    L  L L  
Sbjct: 79  TYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ--SLPDGVFDKLT---QLKDLRLYQ 133

Query: 139 NLLDALP-GFLLSMPQLDTVYRHGN 162
           N L ++P G    +  L  ++ H N
Sbjct: 134 NQLKSVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 31/83 (37%), Positives = 41/83 (49%), Gaps = 11/83 (13%)

Query: 86  LSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---F-TLTFCKNLTHLYLDNNL 140
           L L  N L SLP  +  +LT+L  L L+ N LQ  S+P   F  LT    L  L L+ N 
Sbjct: 57  LYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ--SLPNGVFDKLT---QLKELALNTNQ 111

Query: 141 LDALP-GFLLSMPQLDTVYRHGN 162
           L +LP G    + QL  +  + N
Sbjct: 112 LQSLPDGVFDKLTQLKDLRLYQN 134

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 56.6 bits (137), Expect = 5e-09
 Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 7/100 (7%)

Query: 66  LSLSYTPIGR--RIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPF 123
           L L+ T I     +     ++VL L  N +T++ P +  LTNL+ L + +  + + +   
Sbjct: 112 LDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLT--- 167

Query: 124 TLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
            L     LT L  D+N +  +   L S+P L  V+   N 
Sbjct: 168 PLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQ 206

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 55.5 bits (134), Expect = 1e-08
 Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 7/99 (7%)

Query: 66  LSLSYTPIG--RRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPF 123
           L L    I     +     ++ LS+ +  ++ L P +  L+ L  L   DN +    I  
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKIS--DISP 190

Query: 124 TLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGN 162
            L    NL  ++L NN +  +   L +   L  V     
Sbjct: 191 -LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQ 227

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 9/101 (8%)

Query: 66  LSLSYTPIGRRIF---KCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIP 122
           L LS  P+ + +       +++ L L S  +T + P +  L+NL+VL L  N + N S  
Sbjct: 90  LELSGNPL-KNVSAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNIS-- 145

Query: 123 FTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
             L    NL +L + N  +  L   L ++ +L T+    N 
Sbjct: 146 -PLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK 184

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.5 bits (121), Expect = 4e-07
 Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 7/100 (7%)

Query: 66  LSLSYTPIGRRIF--KCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPF 123
           ++   + +   +     D +  LS     +T++   +  L NL  L L DN + + +   
Sbjct: 24  IAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQITDLA--- 79

Query: 124 TLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
            L     +T L L  N L  +   +  +  + T+      
Sbjct: 80  PLKNLTKITELELSGNPLKNVSA-IAGLQSIKTLDLTSTQ 118

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.1 bits (120), Expect = 6e-07
 Identities = 12/80 (15%), Positives = 28/80 (35%), Gaps = 5/80 (6%)

Query: 83  VEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
              ++   +++T        L  +  L      +        + +  NL  L L +N + 
Sbjct: 21  AIKIAAGKSNVTDTVT-QADLDGITTLSAFGTGVTTIEG---VQYLNNLIGLELKDNQIT 76

Query: 143 ALPGFLLSMPQLDTVYRHGN 162
            L   L ++ ++  +   GN
Sbjct: 77  DLAP-LKNLTKITELELSGN 95

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 7/99 (7%)

Query: 66  LSLSYTPIGR--RIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPF 123
           LS   T +     +   + +  L LK N +T L P +  LT +  L L+ N L+N S   
Sbjct: 46  LSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS--- 101

Query: 124 TLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGN 162
            +   +++  L L +  +  +   L  +  L  +Y   N
Sbjct: 102 AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLN 139

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 47.4 bits (113), Expect = 5e-06
 Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 6/87 (6%)

Query: 66  LSLSYTPIG--RRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPF 123
           LS+    +     +     +  L    N ++ + P +  L NL  + L +N + + S   
Sbjct: 156 LSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP-- 212

Query: 124 TLTFCKNLTHLYLDNNLLDALPGFLLS 150
            L    NL  + L N  +   P F  +
Sbjct: 213 -LANTSNLFIVTLTNQTITNQPVFYNN 238

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 10/76 (13%), Positives = 24/76 (31%), Gaps = 5/76 (6%)

Query: 88  LKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGF 147
            +  ++  + PD   L N   +    + + +     T      +T L      +  + G 
Sbjct: 4   TQPTAINVIFPDPA-LANAIKIAAGKSNVTDTV---TQADLDGITTLSAFGTGVTTIEG- 58

Query: 148 LLSMPQLDTVYRHGNH 163
           +  +  L  +    N 
Sbjct: 59  VQYLNNLIGLELKDNQ 74

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 56.2 bits (136), Expect = 5e-09
 Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 7/100 (7%)

Query: 66  LSLSYTPIGR--RIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPF 123
           L L    +     +     ++ LSL+ N ++ +   +  L  L  L L +N + + +   
Sbjct: 95  LFLDENKVKDLSSLKDLKKLKSLSLEHNGISDING-LVHLPQLESLYLGNNKITDIT--- 150

Query: 124 TLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
            L+    L  L L++N +  +   L  + +L  +Y   NH
Sbjct: 151 VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH 189

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 52.4 bits (126), Expect = 9e-08
 Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 9/100 (9%)

Query: 66  LSLSYTPIGRRIF---KCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIP 122
           L L+   +   I        +  L L  N +  L   +  L  L+ L L  N + + +  
Sbjct: 73  LFLNGNKL-TDIKPLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDIN-- 128

Query: 123 FTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGN 162
             L     L  LYL NN +  +   L  + +LDT+    N
Sbjct: 129 -GLVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDN 166

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 7/99 (7%)

Query: 66  LSLSYTPIGR--RIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPF 123
           LSL +  I     +     +E L L +N +T +   + RLT L  L L DN + +     
Sbjct: 117 LSLEHNGISDINGLVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDIV--- 172

Query: 124 TLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGN 162
            L     L +LYL  N +  L   L  +  LD +     
Sbjct: 173 PLAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQ 210

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 15/81 (18%), Positives = 35/81 (43%), Gaps = 5/81 (6%)

Query: 83  VEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
               +LK  S+T        L ++  +   ++ ++  S+   + +  N+T L+L+ N L 
Sbjct: 26  TIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIK--SVQG-IQYLPNVTKLFLNGNKLT 81

Query: 143 ALPGFLLSMPQLDTVYRHGNH 163
            +   L ++  L  ++   N 
Sbjct: 82  DIKP-LANLKNLGWLFLDENK 101

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 9/78 (11%), Positives = 27/78 (34%), Gaps = 5/78 (6%)

Query: 86  LSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALP 145
                  +  +  D           L    + +A    T     ++  +  +N+ + ++ 
Sbjct: 7   TITVPTPIKQIFSD-DAFAETIKDNLKKKSVTDAV---TQNELNSIDQIIANNSDIKSVQ 62

Query: 146 GFLLSMPQLDTVYRHGNH 163
           G +  +P +  ++ +GN 
Sbjct: 63  G-IQYLPNVTKLFLNGNK 79

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 53.8 bits (130), Expect = 8e-09
 Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 11/87 (12%)

Query: 82  TVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---F-TLTFCKNLTHLYL 136
           T +VL L  N +T L P +  RLT L  L L +N L    +P   F  LT    LT L L
Sbjct: 31  TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT--VLPAGVFDKLT---QLTQLSL 85

Query: 137 DNNLLDALP-GFLLSMPQLDTVYRHGN 162
           ++N L ++P G   ++  L  ++   N
Sbjct: 86  NDNQLKSIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 43.0 bits (102), Expect = 4e-05
 Identities = 30/88 (34%), Positives = 37/88 (42%), Gaps = 13/88 (14%)

Query: 80  CDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIP---F-TLTFCKNLTHLY 135
           C    V      SL S+P  I   T  +VL L DN +    +    F  LT    LT L 
Sbjct: 9   CSGTTV-DCSGKSLASVPTGI--PTTTQVLYLYDNQIT--KLEPGVFDRLT---QLTRLD 60

Query: 136 LDNNLLDALP-GFLLSMPQLDTVYRHGN 162
           LDNN L  LP G    + QL  +  + N
Sbjct: 61  LDNNQLTVLPAGVFDKLTQLTQLSLNDN 88

>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal specific guanylate cyclase activator; 2.40A {Bos taurus} SCOP: a.39.1.5 Length = 193

 Score = 54.1 bits (130), Expect = 9e-09
 Identities = 33/164 (20%), Positives = 66/164 (40%), Gaps = 16/164 (9%)

Query: 285 DELSVIMRSLGMSPT-IAEL-KKYLAE-KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFK 341
           + +  ++ S   +   I E  K +L +   G LS  +F K+        D  K     F+
Sbjct: 11  EVMQDLLESTDFTEHEIQEWYKGFLRDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFR 70

Query: 342 AADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWG 401
             D    G + F +F+  +   S+ +   K +  AF   D   +G +    +  ++    
Sbjct: 71  TFDANGDGTIDFREFIIALSVTSRGKLEQK-LKWAFSMYDLDGNGYISKAEMLEIVQAIY 129

Query: 402 EGLSS------------KEVDQIFREANVTMNSKVRYEDFVKIA 433
           + +SS            K  ++IFR+ +   + K+  E+F++ A
Sbjct: 130 KMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEEFIRGA 173

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.9 bits (130), Expect = 9e-09
 Identities = 19/85 (22%), Positives = 29/85 (34%), Gaps = 4/85 (4%)

Query: 80  CDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNN 139
            D  + +    N +  L      L  L+ L + +N +             +LT L L NN
Sbjct: 41  LDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIG-EGLDQALPDLTELILTNN 98

Query: 140 LLDALPG--FLLSMPQLDTVYRHGN 162
            L  L     L S+  L  +    N
Sbjct: 99  SLVELGDLDPLASLKSLTYLCILRN 123

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 53.4 bits (129), Expect = 1e-08
 Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 11/83 (13%)

Query: 86  LSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---F-TLTFCKNLTHLYLDNNL 140
           LSL  N + SLP  +  +LT L +L L +N LQ  S+P   F  LT    L  L LD N 
Sbjct: 57  LSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ--SLPNGVFDKLT---QLKELALDTNQ 111

Query: 141 LDALP-GFLLSMPQLDTVYRHGN 162
           L ++P G    +  L  ++ H N
Sbjct: 112 LKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 33/87 (37%), Positives = 43/87 (49%), Gaps = 11/87 (12%)

Query: 82  TVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---F-TLTFCKNLTHLYL 136
           +   L L+SN L SLP  +  +LT L  L L+ N +Q  S+P   F  LT    LT LYL
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ--SLPDGVFDKLT---KLTILYL 83

Query: 137 DNNLLDALP-GFLLSMPQLDTVYRHGN 162
             N L +LP G    + QL  +    N
Sbjct: 84  HENKLQSLPNGVFDKLTQLKELALDTN 110

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 5/82 (6%)

Query: 84  EVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIP-FTLTFCKNLTHLYLDNNLL 141
           E L +  N    + P     L++L+ L + ++ +    I         +L  L L +N L
Sbjct: 221 EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS--LIERNAFDGLASLVELNLAHNNL 278

Query: 142 DALP-GFLLSMPQLDTVYRHGN 162
            +LP      +  L  ++ H N
Sbjct: 279 SSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 20/105 (19%), Positives = 34/105 (32%), Gaps = 10/105 (9%)

Query: 66  LSLSYTPIGR---RIFK-CDTVEVLSL-KSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNA 119
           L L   PI       F    ++  L L +   L  +       L NL+ L L    ++  
Sbjct: 152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-- 209

Query: 120 SIPFTLTFCKNLTHLYLDNNLLDALPGFLLS-MPQLDTVYRHGNH 163
            +P  LT    L  L +  N    +       +  L  ++   + 
Sbjct: 210 DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ 253

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 54.0 bits (130), Expect = 4e-08
 Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 3/84 (3%)

Query: 82  TVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNL 140
               L+L  N++  +  D    L +L VL L  N ++            +L  L L +N 
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE-VGAFNGLASLNTLELFDNW 134

Query: 141 LDALP-GFLLSMPQLDTVYRHGNH 163
           L  +P G    + +L  ++   N 
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNP 158

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 53.2 bits (128), Expect = 9e-08
 Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 4/82 (4%)

Query: 84  EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP-FTLTFCKNLTHLYLDNNLL 141
             L L++N + S+P     R+ +L  L L     +   I         NL +L L    +
Sbjct: 150 RELWLRNNPIESIPSYAFNRVPSLMRLDL-GELKKLEYISEGAFEGLFNLKYLNLGMCNI 208

Query: 142 DALPGFLLSMPQLDTVYRHGNH 163
             +P     +  L+ +   GNH
Sbjct: 209 KDMPNL-TPLVGLEELEMSGNH 229

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 51.7 bits (124), Expect = 2e-07
 Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 10/107 (9%)

Query: 56  IPQY-FSHAFLLSLSY---TPIGRRIFKC-DTVEVLSLKSNSLTSLPPDI-GRLTNLRVL 109
           +PQ   S+   L+L       I    F+    +EVL L  NS+  +       L +L  L
Sbjct: 69  VPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTL 128

Query: 110 CLTDNCLQNASIPF-TLTFCKNLTHLYLDNNLLDALPGFLLS-MPQL 154
            L DN L    IP     +   L  L+L NN ++++P +  + +P L
Sbjct: 129 ELFDNWLT--VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 173

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 56.4 bits (136), Expect = 1e-08
 Identities = 28/107 (26%), Positives = 38/107 (35%), Gaps = 7/107 (6%)

Query: 59  YFSHAFLLSLSYTPIGRRIFKC-DTVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCL 116
           +     L     T +   +F+    ++VL L  N L SLPP +   LT LR L L  N L
Sbjct: 457 FLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516

Query: 117 QNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
               +        NL  L +  N L A          L  +    N 
Sbjct: 517 T--VLSHN-DLPANLEILDISRNQLLAPNPD--VFVSLSVLDITHNK 558

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 2/84 (2%)

Query: 82  TVEVLSLKSNSLTSLPP-DIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNL 140
           T E L L  N + ++       L  L++L L                  NL  L L ++ 
Sbjct: 25  TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84

Query: 141 LDALP-GFLLSMPQLDTVYRHGNH 163
           +  L       +  L  +  +   
Sbjct: 85  IYFLHPDAFQGLFHLFELRLYFCG 108

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.3 bits (123), Expect = 4e-07
 Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 8/106 (7%)

Query: 66  LSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPD--IGRLTNLRVLCLTDNCLQNASIPF 123
           + LS   +        T  ++ L  N L +L     + R+ +L++L L  N   + S   
Sbjct: 386 IFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ 445

Query: 124 TLTFCKNLTHLYLDNNLLDAL------PGFLLSMPQLDTVYRHGNH 163
           T +   +L  L+L  N+L               +  L  +Y + N+
Sbjct: 446 TPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNY 491

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.3 bits (123), Expect = 4e-07
 Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 7/104 (6%)

Query: 67  SLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPD--IGRLTNLRVLCLTDNCLQNASI--- 121
            L    I   + +   +++L L  N  +S   D       +L  L L +N LQ A     
Sbjct: 412 RLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETEL 471

Query: 122 -PFTLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGNH 163
                    +L  LYL++N L++LP G    +  L  +  + N 
Sbjct: 472 CWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR 515

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.0 bits (122), Expect = 6e-07
 Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 3/84 (3%)

Query: 82  TVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNL 140
           +V  L L    + SL   +   L +L+VL L  N +   +         NL  L L  NL
Sbjct: 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA-DEAFYGLDNLQVLNLSYNL 325

Query: 141 LDALPGFLLS-MPQLDTVYRHGNH 163
           L  L       +P++  +    NH
Sbjct: 326 LGELYSSNFYGLPKVAYIDLQKNH 349

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 10/103 (9%)

Query: 66  LSLSYTPIG---RRIFK-CDTVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNAS 120
           L+L+Y  I       F   D ++VL+L  N L  L       L  +  + L  N +    
Sbjct: 295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ 354

Query: 121 IPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
              T  F + L  L L +N L  +      +P +  ++  GN 
Sbjct: 355 -DQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNK 392

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 18/108 (16%), Positives = 33/108 (30%), Gaps = 10/108 (9%)

Query: 66  LSLSYTPIGR---RIFK-CDTVEVLSLKSNSLTS--LPPDI-GRLTNLRVLCLTDNCLQN 118
           L L  + I       F+    +  L L    L+   L       L  L  L L+ N +++
Sbjct: 78  LDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS 137

Query: 119 ASIPFTLTFCKNLTHLYLDNNLLDALPGFL---LSMPQLDTVYRHGNH 163
             +  +     +L  +   +N +  +       L    L       N 
Sbjct: 138 LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS 185

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 8/103 (7%)

Query: 67  SLSYTPIGRRIFKCDTVEVLSLKSNSL-----TSLPPDI-GRLTNLRVLCLTDNCLQNAS 120
             S     +   +  ++E L L  N L     T L  D+   L++L+VL L  N L +  
Sbjct: 437 RFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLP 496

Query: 121 IPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
            P   +    L  L L++N L  L    L    L+ +    N 
Sbjct: 497 -PGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQ 537

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 6/100 (6%)

Query: 66  LSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTL 125
           L L    +   I    ++  + L  N L +LP        +    L++N L+N  I + L
Sbjct: 367 LDLRDNAL-TTIHFIPSIPDIFLSGNKLVTLPKINLTANLIH---LSENRLENLDILYFL 422

Query: 126 TFCKNLTHLYLDNNLLDALP--GFLLSMPQLDTVYRHGNH 163
               +L  L L+ N   +          P L+ ++   N 
Sbjct: 423 LRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM 462

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 53.4 bits (129), Expect = 1e-08
 Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 11/87 (12%)

Query: 82  TVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---F-TLTFCKNLTHLYL 136
             + L L +N +T L P +   L NL+ L    N L   +IP   F  LT    LT L L
Sbjct: 34  DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT--AIPTGVFDKLT---QLTQLDL 88

Query: 137 DNNLLDALP-GFLLSMPQLDTVYRHGN 162
           ++N L ++P G   ++  L  +Y + N
Sbjct: 89  NDNHLKSIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 12/70 (17%)

Query: 80  CDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIP---F-TLTFCKNLTHLY 135
           CD   V + ++  L S+P  I   T+ + L L +N +    +    F  L    NL  LY
Sbjct: 12  CDQTLV-NCQNIRLASVPAGI--PTDKQRLWLNNNQIT--KLEPGVFDHLV---NLQQLY 63

Query: 136 LDNNLLDALP 145
            ++N L A+P
Sbjct: 64  FNSNKLTAIP 73

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 52.8 bits (127), Expect = 1e-08
 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 4/86 (4%)

Query: 79  KCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDN 138
           + + +E LS  +  LTS+  ++ +L  L+ L L+DN +           C NLTHL L  
Sbjct: 40  EFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGL-EVLAEKCPNLTHLNLSG 97

Query: 139 NLLDALPG--FLLSMPQLDTVYRHGN 162
           N +  L     L  +  L ++     
Sbjct: 98  NKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.8 bits (122), Expect = 6e-08
 Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 7/96 (7%)

Query: 66  LSLSYTPIGR--RIFKCDTVEVLSLKSNSLTSLPPDIGR-LTNLRVLCLTDNCLQNASIP 122
           LS     +     + K + ++ L L  N ++     +     NL  L L+ N +++ S  
Sbjct: 47  LSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTI 106

Query: 123 FTLTFCKNLTHLYLDNNLLDALPGF----LLSMPQL 154
             L   +NL  L L N  +  L  +       +PQL
Sbjct: 107 EPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQL 142

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 17/80 (21%), Positives = 24/80 (30%), Gaps = 4/80 (5%)

Query: 85  VLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL-DNNLLDA 143
           VL    ++   L         L  L   +  L + +    L     L  L L DN +   
Sbjct: 23  VLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN---LPKLNKLKKLELSDNRVSGG 79

Query: 144 LPGFLLSMPQLDTVYRHGNH 163
           L       P L  +   GN 
Sbjct: 80  LEVLAEKCPNLTHLNLSGNK 99

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 10/82 (12%)

Query: 86  LSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---F-TLTFCKNLTHLYLDNNL 140
           L L SN L +LP  +   LT L VL L  N L    +P   F  L    +L  L++  N 
Sbjct: 69  LYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT--VLPSAVFDRLV---HLKELFMCCNK 123

Query: 141 LDALPGFLLSMPQLDTVYRHGN 162
           L  LP  +  +  L  +    N
Sbjct: 124 LTELPRGIERLTHLTHLALDQN 145

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 4/81 (4%)

Query: 84  EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
            VL L +N LT LP  +  RL +L+ L +  N L    +P  +    +LTHL LD N L 
Sbjct: 91  TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT--ELPRGIERLTHLTHLALDQNQLK 148

Query: 143 ALP-GFLLSMPQLDTVYRHGN 162
           ++P G    +  L   Y  GN
Sbjct: 149 SIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 7/85 (8%)

Query: 82  TVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQN--ASIPFTLTFCKNLTHLYLDN 138
             ++L L  N +T L P +   L NL+ L L  N L      +  +LT    LT L L  
Sbjct: 41  NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT---QLTVLDLGT 97

Query: 139 NLLDALP-GFLLSMPQLDTVYRHGN 162
           N L  LP      +  L  ++   N
Sbjct: 98  NQLTVLPSAVFDRLVHLKELFMCCN 122

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 55.5 bits (134), Expect = 1e-08
 Identities = 20/84 (23%), Positives = 30/84 (35%), Gaps = 3/84 (3%)

Query: 82  TVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNL 140
              +L L  N + +L  D      +L  L L +N +     P       NL  L L +N 
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVE-PGAFNNLFNLRTLGLRSNR 91

Query: 141 LDALP-GFLLSMPQLDTVYRHGNH 163
           L  +P G    +  L  +    N 
Sbjct: 92  LKLIPLGVFTGLSNLTKLDISENK 115

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 3/82 (3%)

Query: 84  EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
            VL L+  ++ ++      RL  L+VL ++     + ++     +  NLT L + +  L 
Sbjct: 179 IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD-TMTPNCLYGLNLTSLSITHCNLT 237

Query: 143 ALP-GFLLSMPQLDTVYRHGNH 163
           A+P   +  +  L  +    N 
Sbjct: 238 AVPYLAVRHLVYLRFLNLSYNP 259

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 34/143 (23%), Positives = 54/143 (37%), Gaps = 20/143 (13%)

Query: 37  TACQRNCS-----LEVGGICSH---IWIPQY-FSHAFLLSLSY---TPIGRRIFKCDT-V 83
           T C   C        V  +C     + +P+   +   LL L       + +  F     +
Sbjct: 1   TGCPPRCECSAQDRAV--LCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHL 58

Query: 84  EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP-FTLTFCKNLTHLYLDNNLL 141
           E L L  N ++++ P     L NLR L L  N L+   IP    T   NLT L +  N +
Sbjct: 59  EELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK--LIPLGVFTGLSNLTKLDISENKI 116

Query: 142 DALPGFLLS-MPQLDTVYRHGNH 163
             L  ++   +  L ++    N 
Sbjct: 117 VILLDYMFQDLYNLKSLEVGDND 139

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 23/106 (21%), Positives = 37/106 (34%), Gaps = 11/106 (10%)

Query: 66  LSLSY---TPIGRRIFK-CDTVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNAS 120
           L L       I   +F     +  L +  N +  L   +   L NL+ L + DN L    
Sbjct: 85  LGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV--Y 142

Query: 121 IPFTLTFC--KNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGNH 163
           I     F    +L  L L+   L ++P   L  +  L  +     +
Sbjct: 143 IS-HRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN 187

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 5/82 (6%)

Query: 84  EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIPF-TLTFCKNLTHLYLDNNLL 141
             L+L  N ++++   +   L  L+ + L    L    +          L  L +  N L
Sbjct: 251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA--VVEPYAFRGLNYLRVLNVSGNQL 308

Query: 142 DALP-GFLLSMPQLDTVYRHGN 162
             L      S+  L+T+    N
Sbjct: 309 TTLEESVFHSVGNLETLILDSN 330

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 9/104 (8%)

Query: 66  LSLSY---TPIGRRIFK-CDTVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNAS 120
           L +S      +   +F+    ++ L +  N L  +       L +L  L L    L   S
Sbjct: 109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT--S 166

Query: 121 IPF-TLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGN 162
           IP   L+    L  L L +  ++A+       + +L  +     
Sbjct: 167 IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 8/82 (9%)

Query: 66  LSLSYTPI---GRRIFK-CDTVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNAS 120
           L+LSY PI      +      ++ + L    L  + P     L  LRVL ++ N L   +
Sbjct: 253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT--T 310

Query: 121 IPF-TLTFCKNLTHLYLDNNLL 141
           +         NL  L LD+N L
Sbjct: 311 LEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.4 bits (113), Expect = 6e-06
 Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 9/105 (8%)

Query: 66  LSLSY---TPIGRRIFK-CDTVEVLSLKS-NSLTSLPPDIGRLTNLRVLCLTDNCLQNAS 120
           L L +     I    FK    ++VL +     L ++ P+     NL  L +T   L   +
Sbjct: 181 LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT--A 238

Query: 121 IP-FTLTFCKNLTHLYLDNNLLDALPGFLLS-MPQLDTVYRHGNH 163
           +P   +     L  L L  N +  + G +L  + +L  +   G  
Sbjct: 239 VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ 283

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 34/83 (40%), Positives = 41/83 (49%), Gaps = 11/83 (13%)

Query: 86  LSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---F-TLTFCKNLTHLYLDNNL 140
           L L  N L SLP  +  +LTNL  L L  N LQ  S+P   F  LT   NLT L L  N 
Sbjct: 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ--SLPKGVFDKLT---NLTELDLSYNQ 168

Query: 141 LDALP-GFLLSMPQLDTVYRHGN 162
           L +LP G    + QL  +  + N
Sbjct: 169 LQSLPEGVFDKLTQLKDLRLYQN 191

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 11/87 (12%)

Query: 82  TVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---F-TLTFCKNLTHLYL 136
            +  L+L  N L SLP  +  +LTNL  L L+ N LQ  S+P   F  LT    L  L L
Sbjct: 134 NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ--SLPEGVFDKLT---QLKDLRL 188

Query: 137 DNNLLDALP-GFLLSMPQLDTVYRHGN 162
             N L ++P G    +  L  ++ H N
Sbjct: 189 YQNQLKSVPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 7/83 (8%)

Query: 84  EVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQN--ASIPFTLTFCKNLTHLYLDNNL 140
             L L  N L SLP  +  +LTNL+ L L +N LQ+    +   LT   NLT+L L +N 
Sbjct: 88  TYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT---NLTYLNLAHNQ 144

Query: 141 LDALP-GFLLSMPQLDTVYRHGN 162
           L +LP G    +  L  +    N
Sbjct: 145 LQSLPKGVFDKLTNLTELDLSYN 167

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 6/83 (7%)

Query: 80  CDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNN 139
            +T    +LK  S+T        L ++  +   ++ +++      L    N+ +L L  N
Sbjct: 19  AET-IKANLKKKSVTDAVTQNE-LNSIDQIIANNSDIKSVQGIQYLP---NVRYLALGGN 73

Query: 140 LLDALPGFLLSMPQLDTVYRHGN 162
            L  +      +  L  +   GN
Sbjct: 74  KLHDISAL-KELTNLTYLILTGN 95

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 5/82 (6%)

Query: 82  TVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLL 141
           +++ +   ++ + S+   I  L N+R L L  N L + S    LT   NLT+L L  N L
Sbjct: 42  SIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDISALKELT---NLTYLILTGNQL 97

Query: 142 DALP-GFLLSMPQLDTVYRHGN 162
            +LP G    +  L  +    N
Sbjct: 98  QSLPNGVFDKLTNLKELVLVEN 119

>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10 Length = 78

 Score = 50.3 bits (121), Expect = 2e-08
 Identities = 22/113 (19%), Positives = 38/113 (33%), Gaps = 40/113 (35%)

Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           +    F  F  N  G I +L EL+  +R+LG   +  E+++ +AE               
Sbjct: 4   DMERIFKRFDTNGDGKI-SLSELTDALRTLGS-TSADEVQRMMAE--------------- 46

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAF 377
                              DT   G + F +F+      +    + K+V   F
Sbjct: 47  ------------------IDTDGDGFIDFNEFISFC---NANPGLMKDVAKVF 78

>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10 Length = 78

 Score = 41.4 bits (98), Expect = 2e-05
 Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 372 EVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVK 431
           ++   FK  DT   G +    L   L   G   S+ EV ++  E +   +  + + +F+ 
Sbjct: 4   DMERIFKRFDTNGDGKISLSELTDALRTLGS-TSADEVQRMMAEIDTDGDGFIDFNEFIS 62

Query: 432 I 432
            
Sbjct: 63  F 63

>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR {Homo sapiens} PDB: 2l4i_A 2lm5_A Length = 214

 Score = 53.7 bits (129), Expect = 2e-08
 Identities = 25/133 (18%), Positives = 48/133 (36%), Gaps = 13/133 (9%)

Query: 310 KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDI 369
              ++ F   L +     KA    + +   F  +       LSF DFL ++   S     
Sbjct: 72  LRAQVPFEQILSL--PELKANPFKERICRVFSTSP--AKDSLSFEDFLDLLSVFSDTATP 127

Query: 370 PKEVVDAFKAADTTKSGTVPAKYLKHVLVN-----WGEGLSSKE----VDQIFREANVTM 420
             +   AF+  D    GT+  + L  ++           LS+ E    +D I  E+++  
Sbjct: 128 DIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDR 187

Query: 421 NSKVRYEDFVKIA 433
           +  +   +F  + 
Sbjct: 188 DGTINLSEFQHVI 200

>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR {Homo sapiens} PDB: 2l4i_A 2lm5_A Length = 214

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 21/122 (17%), Positives = 46/122 (37%), Gaps = 10/122 (8%)

Query: 277 RNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKG--GKLSFPDFLKVMHTHSKAEDIPK 334
            +   +   E  + +  L  +P    + +  +       LSF DFL ++   S       
Sbjct: 70  SSLRAQVPFEQILSLPELKANPFKERICRVFSTSPAKDSLSFEDFLDLLSVFSDTATPDI 129

Query: 335 EVVDAFKAADTTKSGKLSFPDFLKVMH-------THSKAEDIPKEVVD-AFKAADTTKSG 386
           +   AF+  D    G L+  D  ++++           +    K+++D   + +D  + G
Sbjct: 130 KSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDG 189

Query: 387 TV 388
           T+
Sbjct: 190 TI 191

>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR {Homo sapiens} PDB: 2l4i_A 2lm5_A Length = 214

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 29/192 (15%), Positives = 61/192 (31%), Gaps = 39/192 (20%)

Query: 186 TRDEV--LRKQ-KKLHQPSRLQDLAVQSVIASKENFFE-PGLFPGPLVDYIAREYNQYHV 241
           T+ E+    ++  +L    +    +        E     P L   P  + I R ++    
Sbjct: 46  TKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILSLPELKANPFKERICRVFSTSPA 105

Query: 242 CHYCNSAEPLDRSGYKVFTFKTPYLE-FRECFFLF--ARNGTIKTLDELSVIMRSLGMSP 298
               +  + LD     VF+            F +F    +GT+   ++LS ++  L    
Sbjct: 106 KDSLSFEDFLD--LLSVFSDTATPDIKSHYAFRIFDFDDDGTL-NREDLSRLVNCLTGEG 162

Query: 299 TIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVD-AFKAADTTKSGKLSFPDFL 357
               L                              K+++D   + +D  + G ++  +F 
Sbjct: 163 EDTRLS-------------------------ASEMKQLIDNILEESDIDRDGTINLSEFQ 197

Query: 358 KVMHTHSKAEDI 369
            V+   S++ D 
Sbjct: 198 HVI---SRSPDF 206

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 52.3 bits (126), Expect = 4e-08
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 11/83 (13%)

Query: 86  LSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---FT-LTFCKNLTHLYLDNNL 140
           L LK N LT + P+     ++++ L L +N ++   I    F  L     L  L L +N 
Sbjct: 59  LELKRNQLTGIEPNAFEGASHIQELQLGENKIK--EISNKMFLGLH---QLKTLNLYDNQ 113

Query: 141 LDALP-GFLLSMPQLDTVYRHGN 162
           +  +  G    +  L ++    N
Sbjct: 114 ISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 12/88 (13%)

Query: 82  TVEVLSLKSNSLTSLPPD--IGRLTNLRVLCLTDNCLQNASIP---F-TLTFCKNLTHLY 135
               L L  N L  +  D   GRL +L  L L  N L    I    F   +   ++  L 
Sbjct: 30  HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT--GIEPNAFEGAS---HIQELQ 84

Query: 136 LDNNLLDALP-GFLLSMPQLDTVYRHGN 162
           L  N +  +     L + QL T+  + N
Sbjct: 85  LGENKIKEISNKMFLGLHQLKTLNLYDN 112

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 49.2 bits (118), Expect = 4e-07
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 10/62 (16%)

Query: 86  LSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---F-TLTFCKNLTHLYLDNNL 140
           L L  N +  +   +   L  L+ L L DN +    +    F  L    +LT L L +N 
Sbjct: 83  LQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS--CVMPGSFEHL---NSLTSLNLASNP 137

Query: 141 LD 142
            +
Sbjct: 138 FN 139

>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis thaliana} PDB: 1v1g_A 1v1f_A Length = 207

 Score = 51.7 bits (124), Expect = 6e-08
 Identities = 21/134 (15%), Positives = 53/134 (39%), Gaps = 10/134 (7%)

Query: 308 AEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAE 367
               G +   +F   +  +    +        F   D  ++G + F +F++ +     + 
Sbjct: 50  IIDDGLIHKEEFQLALFRNRNRRN--LFADRIFDVFDVKRNGVIEFGEFVRSLGVFHPSA 107

Query: 368 DIPKEVVDAFKAADTTKSGTVPAKYLKHVL--------VNWGEGLSSKEVDQIFREANVT 419
            + ++V  AFK  D  ++G +  + LK ++        +   E +    VD+ F +A+  
Sbjct: 108 PVHEKVKFAFKLYDLRQTGFIEREELKEMVVALLHESELVLSEDMIEVMVDKAFVQADRK 167

Query: 420 MNSKVRYEDFVKIA 433
            + K+  +++    
Sbjct: 168 NDGKIDIDEWKDFV 181

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 51.1 bits (123), Expect = 8e-08
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 11/83 (13%)

Query: 86  LSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP---F-TLTFCKNLTHLYLDNNL 140
           + L +N +++L       +T L  L L+ N L+   IP   F  L    +L  L L  N 
Sbjct: 59  IDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR--CIPPRTFDGLK---SLRLLSLHGND 113

Query: 141 LDALP-GFLLSMPQLDTVYRHGN 162
           +  +P G    +  L  +    N
Sbjct: 114 ISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 51.1 bits (123), Expect = 9e-08
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 10/86 (11%)

Query: 82  TVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIP---F-TLTFCKNLTHLYLD 137
            V  L L  N  T +P ++    +L ++ L++N +   ++    F  +T    L  L L 
Sbjct: 32  DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIS--TLSNQSFSNMT---QLLTLILS 86

Query: 138 NNLLDALP-GFLLSMPQLDTVYRHGN 162
            N L  +P      +  L  +  HGN
Sbjct: 87  YNRLRCIPPRTFDGLKSLRLLSLHGN 112

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 51.1 bits (123), Expect = 9e-08
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 86  LSLKSNSLTSLPPDI-GRLTNLRVLCLTDNCLQNASIP-FTLTFCKNLTHLYLDNNLLD 142
           L L  N L  +PP     L +LR+L L  N +    +P         L+HL +  N L 
Sbjct: 83  LILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS--VVPEGAFNDLSALSHLAIGANPLY 139

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 52.6 bits (126), Expect = 1e-07
 Identities = 16/75 (21%), Positives = 23/75 (30%), Gaps = 5/75 (6%)

Query: 67  SLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLT 126
           SL              +  L+L    L  +P  +     L VL L+ N L     P    
Sbjct: 239 SLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPA--KLSVLDLSYNRLD--RNPSPDE 294

Query: 127 FCKNLTHLYLDNNLL 141
               + +L L  N  
Sbjct: 295 L-PQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 49.1 bits (117), Expect = 1e-06
 Identities = 24/106 (22%), Positives = 37/106 (34%), Gaps = 8/106 (7%)

Query: 59  YFSHAFLLSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIG--RLTNLRVLCLTDNCL 116
              +A + + S             ++ L L  NSL            + L  L L+   L
Sbjct: 207 ALRNAGMETPSGV-CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265

Query: 117 QNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGN 162
           +   +P  L     L+ L L  N LD  P     +PQ+  +   GN
Sbjct: 266 K--QVPKGLP--AKLSVLDLSYNRLDRNP-SPDELPQVGNLSLKGN 306

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 4/95 (4%)

Query: 60  FSHAFLLSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRL----TNLRVLCLTDNC 115
            S    L            K  T++VL+L++  + +       L      L+ L L+ N 
Sbjct: 180 LSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS 239

Query: 116 LQNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLS 150
           L++A+   +  +   L  L L    L  +P  L +
Sbjct: 240 LRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPA 274

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.8 bits (111), Expect = 6e-06
 Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 6/74 (8%)

Query: 83  VEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPFTLTFC----KNLTHLYLD 137
           ++VLS+      +   + +     L  L L+DN             C      L  L L 
Sbjct: 151 LKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG-ERGLISALCPLKFPTLQVLALR 209

Query: 138 NNLLDALPGFLLSM 151
           N  ++   G   ++
Sbjct: 210 NAGMETPSGVCSAL 223

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 18/115 (15%), Positives = 36/115 (31%), Gaps = 13/115 (11%)

Query: 59  YFSHAFLLSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRL-----TNLRVLCLTD 113
              +  +   +  P+         + +L+L++ S  +    +  L       L+VL +  
Sbjct: 101 TLENLEVTGTAPPPLLEATGP--DLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ 158

Query: 114 NCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLS-----MPQLDTVYRHGNH 163
               N S      F   L+ L L +N      G + +      P L  +      
Sbjct: 159 AHSLNFSCEQVRVF-PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG 212

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 29/157 (18%), Positives = 51/157 (32%), Gaps = 14/157 (8%)

Query: 287 LSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFLKVMH-------THSKAEDIPKE 335
           L  +   L       EL            G+L   + +                  I  E
Sbjct: 332 LLYMASKLTSQEETKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESE 391

Query: 336 VVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKH 395
           V     AAD  ++G + + +F+ V           K +  AF+  D   +G +    L  
Sbjct: 392 VDAILGAADFDRNGYIDYSEFVTVAMDRKSLLSKDK-LESAFQKFDQDGNGKISVDELAS 450

Query: 396 VLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           V     + L SK   ++    +   +  V +E+F K+
Sbjct: 451 VFG--LDHLESKTWKEMISGIDSNNDGDVDFEEFCKM 485

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 10/99 (10%)

Query: 66  LSLSYTPIGRRI----FKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASI 121
           LSL    I ++I       DT+E L +  N + SL   I +L NLRVL +++N + N   
Sbjct: 75  LSLGRNLI-KKIENLDAVADTLEELWISYNQIASLSG-IEKLVNLRVLYMSNNKITNWGE 132

Query: 122 PFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRH 160
              L     L  L L  N L        +  +    YR 
Sbjct: 133 IDKLAALDKLEDLLLAGNPLYNDYKENNATSE----YRI 167

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 49.7 bits (119), Expect = 4e-07
 Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 3/78 (3%)

Query: 86  LSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALP 145
           L      +  +   +  L   + L L+ N ++  S   +L+  +NL  L L  NL+  + 
Sbjct: 30  LHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS---SLSGMENLRILSLGRNLIKKIE 86

Query: 146 GFLLSMPQLDTVYRHGNH 163
                   L+ ++   N 
Sbjct: 87  NLDAVADTLEELWISYNQ 104

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 8/99 (8%)

Query: 66  LSLSYTPIGR--RIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPF 123
            +L    +       +   V+  +  ++++ SL   +   TNL+ L L+ N + + S   
Sbjct: 24  QNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG-MQFFTNLKELHLSHNQISDLS--- 79

Query: 124 TLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGN 162
            L     L  L ++ N L  L G  +    L  ++   N
Sbjct: 80  PLKDLTKLEELSVNRNRLKNLNG--IPSACLSRLFLDNN 116

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 5/81 (6%)

Query: 83  VEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
               +L   S+T L      L+ ++     ++ +Q+ +    + F  NL  L+L +N + 
Sbjct: 21  AVKQNLGKQSVTDLVS-QKELSGVQNFNGDNSNIQSLA---GMQFFTNLKELHLSHNQIS 76

Query: 143 ALPGFLLSMPQLDTVYRHGNH 163
            L   L  + +L+ +  + N 
Sbjct: 77  DLSP-LKDLTKLEELSVNRNR 96

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 6/80 (7%)

Query: 84  EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDA 143
           E LS+  N L +L         L  L L +N L++     +L   KNL  L + NN L +
Sbjct: 88  EELSVNRNRLKNLNG--IPSACLSRLFLDNNELRDTD---SLIHLKNLEILSIRNNKLKS 142

Query: 144 LPGFLLSMPQLDTVYRHGNH 163
           +   L  + +L+ +  HGN 
Sbjct: 143 IVM-LGFLSKLEVLDLHGNE 161

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 10/79 (12%)

Query: 66  LSLSYTPIG--RRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPF 123
           LS+    +     +     +EVL L  N +T+    + RL  +  + LT     N  +  
Sbjct: 133 LSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGG-LTRLKKVNWIDLTGQKCVNEPV-- 189

Query: 124 TLTFCKNLTHLYLDNNLLD 142
                K    LY+ N + D
Sbjct: 190 -----KYQPELYITNTVKD 203

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 14/81 (17%), Positives = 35/81 (43%), Gaps = 2/81 (2%)

Query: 84  EVLSLKSNSLTSL-PPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
           E L +    +TS   P++  LT+L +L ++ +   ++ +   +     +  + L  N   
Sbjct: 91  ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK-INTLPKVNSIDLSYNGAI 149

Query: 143 ALPGFLLSMPQLDTVYRHGNH 163
                L ++P+L ++    + 
Sbjct: 150 TDIMPLKTLPELKSLNIQFDG 170

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 45.3 bits (108), Expect = 9e-06
 Identities = 13/103 (12%), Positives = 32/103 (31%), Gaps = 8/103 (7%)

Query: 66  LSLSYTPIGRRIFKC----DTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNAS 120
           L +    +            ++ +L +  ++        I  L  +  + L+ N     +
Sbjct: 93  LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN--GAIT 150

Query: 121 IPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
               L     L  L +  + +    G +   P+L+ +Y     
Sbjct: 151 DIMPLKTLPELKSLNIQFDGVHDYRG-IEDFPKLNQLYAFSQT 192

>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A* Length = 183

 Score = 50.2 bits (120), Expect = 2e-07
 Identities = 25/133 (18%), Positives = 48/133 (36%), Gaps = 13/133 (9%)

Query: 310 KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDI 369
              ++ F   L +     KA    + +   F  +       LSF DFL ++   S     
Sbjct: 41  LRAQVPFEQILSLPE--LKANPFKERICRVFSTSP--AKDSLSFEDFLDLLSVFSDTATP 96

Query: 370 PKEVVDAFKAADTTKSGTVPAKYLKHVL-----VNWGEGLSSKE----VDQIFREANVTM 420
             +   AF+  D    GT+  + L  ++           LS+ E    +D I  E+++  
Sbjct: 97  DIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDR 156

Query: 421 NSKVRYEDFVKIA 433
           +  +   +F  + 
Sbjct: 157 DGTINLSEFQHVI 169

>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A* Length = 183

 Score = 45.5 bits (108), Expect = 6e-06
 Identities = 23/143 (16%), Positives = 51/143 (35%), Gaps = 15/143 (10%)

Query: 256 YKVFTFKTPYLEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKG--GK 313
           ++ F    P     +       +   +   E  + +  L  +P    + +  +       
Sbjct: 23  HRRFCELLP-----QEQRSVESSLRAQVPFEQILSLPELKANPFKERICRVFSTSPAKDS 77

Query: 314 LSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMH-------THSKA 366
           LSF DFL ++   S       +   AF+  D    G L+  D  ++++           +
Sbjct: 78  LSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLS 137

Query: 367 EDIPKEVVDA-FKAADTTKSGTV 388
               K+++D   + +D  + GT+
Sbjct: 138 ASEMKQLIDNILEESDIDRDGTI 160

>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A* Length = 183

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 31/192 (16%), Positives = 68/192 (35%), Gaps = 39/192 (20%)

Query: 186 TRDEVLRKQKKLHQPSRLQDLAVQSVIASKENFFE----PGLFPGPLVDYIAREYNQYHV 241
           T+ E+L   ++  +    +  +V+S + ++  F +    P L   P  + I R ++    
Sbjct: 15  TKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILSLPELKANPFKERICRVFSTSPA 74

Query: 242 CHYCNSAEPLDRSGYKVFTFKTPYLE-FRECFFLF--ARNGTIKTLDELSVIMRSLGMSP 298
               +  + LD     VF+            F +F    +GT+   ++LS ++  L    
Sbjct: 75  KDSLSFEDFLD--LLSVFSDTATPDIKSHYAFRIFDFDDDGTL-NREDLSRLVNCLTGEG 131

Query: 299 TIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDA-FKAADTTKSGKLSFPDFL 357
               L                              K+++D   + +D  + G ++  +F 
Sbjct: 132 EDTRLS-------------------------ASEMKQLIDNILEESDIDRDGTINLSEFQ 166

Query: 358 KVMHTHSKAEDI 369
            V+   S++ D 
Sbjct: 167 HVI---SRSPDF 175

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 4/86 (4%)

Query: 79  KCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDN 138
           +   +E LSL +  L S+  ++ +L  L+ L L++N +             NLTHL L  
Sbjct: 47  EFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGL-DMLAEKLPNLTHLNLSG 104

Query: 139 NLLDALPG--FLLSMPQLDTVYRHGN 162
           N L  +     L  +  L ++     
Sbjct: 105 NKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 5/81 (6%)

Query: 79  KCDTVEVLSLKSNSLTSLPPDIG-RLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLD 137
           K   ++ L L  N +      +  +L NL  L L+ N L++ S    L   + L  L L 
Sbjct: 69  KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLF 128

Query: 138 NNLLDALPGF----LLSMPQL 154
           N  +  L  +       +PQL
Sbjct: 129 NCEVTNLNDYRESVFKLLPQL 149

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.1 bits (107), Expect = 7e-06
 Identities = 18/80 (22%), Positives = 27/80 (33%), Gaps = 4/80 (5%)

Query: 85  VLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL-DNNLLDA 143
           VL    ++   +        NL  L L +  L + S    L     L  L L +N +   
Sbjct: 30  VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN---LPKLPKLKKLELSENRIFGG 86

Query: 144 LPGFLLSMPQLDTVYRHGNH 163
           L      +P L  +   GN 
Sbjct: 87  LDMLAEKLPNLTHLNLSGNK 106

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 52.0 bits (124), Expect = 2e-07
 Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 7/100 (7%)

Query: 66  LSLSYTPIGR--RIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPF 123
           LSL +  I     +     +E L L +N +T +   + RLT L  L L DN + +     
Sbjct: 114 LSLEHNGISDINGLVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDIVP-- 170

Query: 124 TLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
            L     L +LYL  N +  L   L  +  LD +      
Sbjct: 171 -LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQE 208

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 50.9 bits (121), Expect = 5e-07
 Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 9/108 (8%)

Query: 58  QYFSHAFLLSLSYTPIGRRIF---KCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDN 114
           QY  +   L L+   +   I        +  L L  N +  L   +  L  L+ L L  N
Sbjct: 62  QYLPNVTKLFLNGNKL-TDIKPLTNLKNLGWLFLDENKIKDLSS-LKDLKKLKSLSLEHN 119

Query: 115 CLQNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGN 162
            + + +    L     L  LYL NN +  +   L  + +LDT+    N
Sbjct: 120 GISDIN---GLVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDN 163

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 47.4 bits (112), Expect = 6e-06
 Identities = 20/101 (19%), Positives = 42/101 (41%), Gaps = 9/101 (8%)

Query: 66  LSLSYTPIGRRIF---KCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIP 122
                TPI ++IF           +LK  S+T        L ++  +   ++ ++  S+ 
Sbjct: 4   TITVSTPI-KQIFPDDAFAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIK--SVQ 59

Query: 123 FTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH 163
             + +  N+T L+L+ N L  +   L ++  L  ++   N 
Sbjct: 60  G-IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK 98

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.9 bits (121), Expect = 3e-07
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 5/83 (6%)

Query: 83  VEVLSLKSN-SLTSLPP-DIGRLTNLRVLCLTDNCLQNASI-PFTLTFCKNLTHLYLDNN 139
           +  L +++   L  L   D+  L  LR L +  + L+   + P    F   L+ L L  N
Sbjct: 33  LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR--FVAPDAFHFTPRLSRLNLSFN 90

Query: 140 LLDALPGFLLSMPQLDTVYRHGN 162
            L++L    +    L  +   GN
Sbjct: 91  ALESLSWKTVQGLSLQELVLSGN 113

>2zfd_A Calcineurin B-like protein 2; calcium binding protein, protein-protein complex, ATP-bindin kinase, nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP: a.39.1.5 PDB: 1uhn_A Length = 226

 Score = 49.8 bits (119), Expect = 4e-07
 Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 12/131 (9%)

Query: 312 GKLSFPDFLKVMH-THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIP 370
           G ++  +F   +  T+ K       V D F   DT  +G L F +F + +        I 
Sbjct: 65  GLINKEEFQLALFKTNKKESLFADRVFDLF---DTKHNGILGFEEFARALSVFHPNAPID 121

Query: 371 KEVVDAFKAADTTKSGTVPAKYLKHVLV--------NWGEGLSSKEVDQIFREANVTMNS 422
            ++  +F+  D  + G +  + +K ++V        N  + +    +D+ F EA+   + 
Sbjct: 122 DKIHFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDG 181

Query: 423 KVRYEDFVKIA 433
           K+  E++  + 
Sbjct: 182 KIDKEEWRSLV 192

>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A Length = 81

 Score = 46.4 bits (111), Expect = 5e-07
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 367 EDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGE-GLSSKEVDQIFREANVTMNSKVR 425
           +D  +E++ AFK  D    G +     K ++   GE  L+  EV++  +EA+   N  + 
Sbjct: 4   QDDEEEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVID 63

Query: 426 YEDFVKI 432
             +F+ +
Sbjct: 64  IPEFMDL 70

>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A Length = 81

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 37/97 (38%)

Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSP-TIAELKKYLAEKGGKLSFPDFLKVM 323
           E    F +F    +G I   DE   IM+ +G  P T AE+++ + E              
Sbjct: 9   EILRAFKVFDANGDGVI-DFDEFKFIMQKVGEEPLTDAEVEEAMKE-------------- 53

Query: 324 HTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVM 360
                              AD   +G +  P+F+ ++
Sbjct: 54  -------------------ADEDGNGVIDIPEFMDLI 71

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 50.1 bits (120), Expect = 7e-07
 Identities = 24/160 (15%), Positives = 56/160 (35%), Gaps = 17/160 (10%)

Query: 287 LSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFLKVMHTHSKAED----------I 332
           L  +   L       EL     +      G+L   + ++      + +           +
Sbjct: 321 LLYMGSKLTSQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAV 380

Query: 333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKY 392
             EV     A D  K+G + + +F+ V           + +  AF+  D+  SG + +  
Sbjct: 381 EHEVDQVLDAVDFDKNGYIEYSEFVTVAMDRKTLLSRER-LERAFRMFDSDNSGKISSTE 439

Query: 393 LKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           L  +       + S+    +  E +   + +V +++F ++
Sbjct: 440 LATIFG--VSDVDSETWKSVLSEVDKNNDGEVDFDEFQQM 477

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 50.1 bits (120), Expect = 9e-07
 Identities = 28/157 (17%), Positives = 62/157 (39%), Gaps = 14/157 (8%)

Query: 287 LSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFLKVMHTHSKAED-------IPKE 335
           +  I   L       EL     +      G+L   + ++  +     ++       + +E
Sbjct: 341 ILFIGSKLTTLEERKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEE 400

Query: 336 VVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKH 395
           V +  K  D  K+G + + +F+ V           + +  AF   DT KSG +  + L +
Sbjct: 401 VDNILKEVDFDKNGYIEYSEFISVCMDKQILFSEER-LRRAFNLFDTDKSGKITKEELAN 459

Query: 396 VLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           +       +S K  + +  EA+   ++ + +++FV +
Sbjct: 460 LFG--LTSISEKTWNDVLGEADQNKDNMIDFDEFVSM 494

>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand, helix-loop- helix, nervous system, metal binding protein; NMR {Haemopis marmorata} PDB: 1yx8_A Length = 83

 Score = 44.5 bits (106), Expect = 2e-06
 Identities = 16/96 (16%), Positives = 27/96 (28%), Gaps = 30/96 (31%)

Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           E    F       +G + T  EL   M +L     +++                      
Sbjct: 8   ELEAAFKKLDANGDGYV-TALELQTFMVTLDAYKALSK---------------------- 44

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVM 360
                + + +      K AD    GK+S  +FL   
Sbjct: 45  -----DKVKEASAKLIKMADKNSDGKISKEEFLNAN 75

>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand, helix-loop- helix, nervous system, metal binding protein; NMR {Haemopis marmorata} PDB: 1yx8_A Length = 83

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 6/73 (8%)

Query: 366 AEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSK------EVDQIFREANVT 419
           A  +  E+  AFK  D    G V A  L+  +V      +           ++ + A+  
Sbjct: 2   ACKVKAELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKN 61

Query: 420 MNSKVRYEDFVKI 432
            + K+  E+F+  
Sbjct: 62  SDGKISKEEFLNA 74

>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2ju0_A Length = 190

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 30/166 (18%), Positives = 64/166 (38%), Gaps = 16/166 (9%)

Query: 283 TLDELSVIMRSLGMSPT-IAEL-KKYLAE-KGGKLSFPDFLKVMHTHSKAEDIPKEVVDA 339
           + D+L+ + +S       I +  K +L +   G+L+  DF+K+                 
Sbjct: 9   SKDDLTCLKQSTYFDRREIQQWHKGFLRDCPSGQLAREDFVKIYKQFFPFGSPEDFANHL 68

Query: 340 FKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVL-- 397
           F   D   +G + F +F+ V+ T S+     K +  AF+  D    G +    +  ++  
Sbjct: 69  FTVFDKDNNGFIHFEEFITVLSTTSRGTLEEK-LSWAFELYDLNHDGYITFDEMLTIVAS 127

Query: 398 ----------VNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA 433
                     +N  E      V +IF+  +   +  +  ++F + +
Sbjct: 128 VYKMMGSMVTLNEDEATPEMRVKKIFKLMDKNEDGYITLDEFREGS 173

>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding protein; HET: MYR; NMR {Schizosaccharomyces pombe} Length = 190

 Score = 46.4 bits (110), Expect = 3e-06
 Identities = 30/164 (18%), Positives = 65/164 (39%), Gaps = 16/164 (9%)

Query: 285 DELSVIMRSLGMSPT-IAEL-KKYLAE-KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFK 341
           D+L  ++RS       + +  K +  +   G L+  +F K+        D        F 
Sbjct: 11  DQLQDLVRSTRFDKKELQQWYKGFFKDCPSGHLNKSEFQKIYKQFFPFGDPSAFAEYVFN 70

Query: 342 AADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWG 401
             D  K+G + F +F+  +   S+ E   K ++ AF+  D   +G +    +  ++    
Sbjct: 71  VFDADKNGYIDFKEFICALSVTSRGELNDK-LIWAFQLYDLDNNGLISYDEMLRIVDAIY 129

Query: 402 EGLSS------------KEVDQIFREANVTMNSKVRYEDFVKIA 433
           + + S            K V++IF   +   + ++  E+F + +
Sbjct: 130 KMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKDGQLTLEEFCEGS 173

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 24/111 (21%), Positives = 36/111 (32%), Gaps = 15/111 (13%)

Query: 64  FLLSLSY----TPIGRRIFK--CDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNC-L 116
           F+L ++     T I    F+  C+    L L +N  TS+       T L  + L  N  L
Sbjct: 133 FILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYL 192

Query: 117 QNASIPFTLTF---CKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNHN 164
               I     F       + L +    + ALP   L    L  +       
Sbjct: 193 T--VID-KDAFGGVYSGPSLLDVSQTSVTALPSKGLE--HLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 16/109 (14%), Positives = 30/109 (27%), Gaps = 28/109 (25%)

Query: 82  TVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDNC--------------------LQNA- 119
           + + L L    L ++P      L N+  + ++ +                     ++N  
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 120 ---SIP-FTLTFCKNLTHLYLDNNLLDALPG--FLLSMPQLDTVYRHGN 162
               I    L     L  L + N  L   P    + S      +    N
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDN 140

>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein, EF-hand, calcium ION, metal binding protein; HET: 1PE P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A Length = 190

 Score = 45.2 bits (107), Expect = 9e-06
 Identities = 30/166 (18%), Positives = 62/166 (37%), Gaps = 16/166 (9%)

Query: 283 TLDELSVIMRSLGMSPT-IAEL-KKYLAE-KGGKLSFPDFLKVMHTHSKAEDIPKEVVDA 339
             + +  + R    +   + +  K ++ +   G+L    F K+        D  K     
Sbjct: 9   KPEVVEELTRKTYFTEKEVQQWYKGFIKDCPSGQLDAAGFQKIYKQFFPFGDPTKFATFV 68

Query: 340 FKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVL-- 397
           F   D  K G++ F +F++ +   S+     K +  AFK  D    G +    +  ++  
Sbjct: 69  FNVFDENKDGRIEFSEFIQALSVTSRGTLDEK-LRWAFKLYDLDNDGYITRNEMLDIVDA 127

Query: 398 ----VNWGEGLSSKE------VDQIFREANVTMNSKVRYEDFVKIA 433
               V     L  +E      VD+IF   +   + K+  ++F + +
Sbjct: 128 IYQMVGNTVELPEEENTPEKRVDRIFAMMDKNADGKLTLQEFQEGS 173

>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein STR and functional analyses, riken structural genomics/proteomi initiative; 2.20A {Homo sapiens} PDB: 2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A 2het_A Length = 207

 Score = 45.4 bits (107), Expect = 9e-06
 Identities = 21/168 (12%), Positives = 64/168 (38%), Gaps = 18/168 (10%)

Query: 283 TLDELSVIMRSLGMSPT-IAEL-KKYLAE-KGGKLSFPDFLKVMHTHSKAEDIPKEVVDA 339
           + + L  +  +   S   +    + +L +   G+++   F  +        D        
Sbjct: 17  SKEILEELQLNTKFSEEELCSWYQSFLKDCPTGRITQQQFQSIYAKFFPDTDPKAYAQHV 76

Query: 340 FKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN 399
           F++ D+   G L F +++  +H  +  +   K +  AF   D   +GT+    +  +++ 
Sbjct: 77  FRSFDSNLDGTLDFKEYVIALHMTTAGKTNQK-LEWAFSLYDVDGNGTISKNEVLEIVMA 135

Query: 400 WGEGLSSKE--------------VDQIFREANVTMNSKVRYEDFVKIA 433
             + ++ ++               ++I++      + K+  ++F++  
Sbjct: 136 IFKMITPEDVKLLPDDENTPEKRAEKIWKYFGKNDDDKLTEKEFIEGT 183

>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica} Length = 66

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 9/51 (17%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 338 DAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTV 388
             FK  D    G +S+ +    +      ++  + +   FK+ D   +G +
Sbjct: 4   ALFKEIDVNGDGAVSYEEVKAFVSKKRAIKN-EQLLQLIFKSIDADGNGEI 53

>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica} Length = 66

 Score = 41.8 bits (99), Expect = 1e-05
 Identities = 11/58 (18%), Positives = 22/58 (37%)

Query: 375 DAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
             FK  D    G V  + +K  +       + + +  IF+  +   N ++   +F K 
Sbjct: 4   ALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKF 61

>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand (helix-loop-helix) calcium binding protein, four-HEL domain, protein engineering; HET: FME; 1.44A {Bos taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A 1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A 1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A Length = 76

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 370 PKEVVDAFKAADTT--KSGTVPAKYLKHVLVNWGEGL--SSKEVDQIFREANVTMNSKVR 425
           P+E+  AF+           +  + LK V+   G  L      +D++  E +   + +V 
Sbjct: 4   PEEIKGAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVS 63

Query: 426 YEDFVKI 432
           +E+F+ +
Sbjct: 64  FEEFLVM 70

>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand (helix-loop-helix) calcium binding protein, four-HEL domain, protein engineering; HET: FME; 1.44A {Bos taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A 1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A 1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A Length = 76

 Score = 39.9 bits (94), Expect = 8e-05
 Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 36/98 (36%)

Query: 267 EFRECFFLFAR----NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKV 322
           E +  F +FA        I + +EL ++M++LG S                         
Sbjct: 6   EIKGAFEVFAAKEGDPNQI-SKEELKLVMQTLGPSLL----------------------- 41

Query: 323 MHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVM 360
                        + +  +  D    G++SF +FL +M
Sbjct: 42  --------KGMSTLDEMIEEVDKNGDGEVSFEEFLVMM 71

>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens} Length = 91

 Score = 40.8 bits (96), Expect = 5e-05
 Identities = 9/74 (12%), Positives = 28/74 (37%), Gaps = 3/74 (4%)

Query: 357 LKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREA 416
           L         E++   +   F A D  +SG +  +  + +       +   + + +F+  
Sbjct: 14  LYFQGADGDGEEL-ARLRSVFAACDANRSGRLEREEFRALCTELR--VRPADAEAVFQRL 70

Query: 417 NVTMNSKVRYEDFV 430
           +   +  + +++F 
Sbjct: 71  DADRDGAITFQEFA 84

>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens} Length = 91

 Score = 40.8 bits (96), Expect = 6e-05
 Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 9/63 (14%)

Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFL 320
             R  F     N  G +   +E   +   L + P  A+ +         + G ++F +F 
Sbjct: 28  RLRSVFAACDANRSGRL-EREEFRALCTELRVRP--ADAEAVFQRLDADRDGAITFQEFA 84

Query: 321 KVM 323
           +  
Sbjct: 85  RGF 87

>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens} Length = 91

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 4/69 (5%)

Query: 320 LKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKA 379
           L         E++   +   F A D  +SG+L   +F  +            +    F+ 
Sbjct: 14  LYFQGADGDGEEL-ARLRSVFAACDANRSGRLEREEFRALCTELRVRPA---DAEAVFQR 69

Query: 380 ADTTKSGTV 388
            D  + G +
Sbjct: 70  LDADRDGAI 78

>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport, ionic channel, membrane, PO potassium channel, potassium transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A Length = 229

 Score = 42.9 bits (101), Expect = 8e-05
 Identities = 25/136 (18%), Positives = 50/136 (36%), Gaps = 13/136 (9%)

Query: 310 KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDI 369
             G ++   F ++        D        F A DT  +G +SF DF+K +    +    
Sbjct: 78  PSGVVNEETFKEIYSQFFPQGDSTTYAHFLFNAFDTDHNGAVSFEDFIKGLSILLRGTVQ 137

Query: 370 PKEVVDAFKAADTTKSGTVPAKYLKHVL------VNWGEGLSSKE------VDQIFREAN 417
            K +  AF   D  K G +  + +  ++      +        KE      V+  F++ +
Sbjct: 138 EK-LNWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMD 196

Query: 418 VTMNSKVRYEDFVKIA 433
              +  V  ++F++  
Sbjct: 197 KNKDGVVTIDEFIESC 212

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 15/110 (13%), Positives = 27/110 (24%), Gaps = 27/110 (24%)

Query: 82  TVEVLSLKSNSLTSLPPDI-GRLTNLRVLCLTDN--------------------CLQNA- 119
               L      L  +         +L  + ++ N                     ++ A 
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 120 ---SIP-FTLTFCKNLTHLYLDNNLLDALPGFL-LSMPQLDTVYRHGNHN 164
               I         NL +L + N  +  LP    +   Q   +    N N
Sbjct: 91  NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 140

>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E Length = 183

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 24/134 (17%), Positives = 49/134 (36%), Gaps = 13/134 (9%)

Query: 310 KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDI 369
             G ++   F ++        D        F A DTT++G + F DF+  +    +    
Sbjct: 32  PSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVH 91

Query: 370 PKEVVDAFKAADTTKSGTVPAKYLKHV------LVNWGEGLSSKE------VDQIFREAN 417
            K +   F   D  K G +  + +  +      ++        KE      VD  F++ +
Sbjct: 92  EK-LRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMD 150

Query: 418 VTMNSKVRYEDFVK 431
              +  V  ++F++
Sbjct: 151 KNKDGIVTLDEFLE 164

>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus} Length = 256

 Score = 40.8 bits (95), Expect = 5e-04
 Identities = 20/136 (14%), Positives = 46/136 (33%), Gaps = 13/136 (9%)

Query: 310 KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDI 369
             G +    F  +        D        F A D   +G + F DF+  +    +    
Sbjct: 105 PTGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFVVGLSILLRGTVH 164

Query: 370 PKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKE------------VDQIFREAN 417
            K +  AF   D  K G +  + +  ++ +  + +                V++ F++ +
Sbjct: 165 EK-LKWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMD 223

Query: 418 VTMNSKVRYEDFVKIA 433
              +  V  ++F++  
Sbjct: 224 RNQDGVVTIDEFLETC 239

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	441
2lmt_A	148	Calmodulin-related protein 97A; spermatogenesis, m	99.88
2lhi_A	176	Calmodulin, serine/threonine-protein phosphatase c	99.87
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.87
3i5g_C	159	Myosin catalytic light chain LC-1, mantle muscle;	99.86
3u0k_A	440	Rcamp; fluorescent protein, calcium binding, EF-ha	99.86
2obh_A	143	Centrin-2; DNA repair complex EF hand superfamily	99.85
1y1x_A	191	Leishmania major homolog of programmed cell death	99.85
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.85
3i5g_B	153	Myosin regulatory light chain LC-2, mantle muscle;	99.84
1exr_A	148	Calmodulin; high resolution, disorder, metal trans	99.84
2d8n_A	207	Recoverin; structural genomics, NPPSFA, national p	99.84
2znd_A	172	Programmed cell death protein 6; penta-EF-hand pro	99.83
3fwb_A	161	Cell division control protein 31; gene gating, com	99.83
2bl0_C	142	Myosin regulatory light chain; muscle protein, sli	99.82
3sjs_A	220	URE3-BP sequence specific DNA binding protein; EF-	99.82
3qrx_A	169	Centrin; calcium-binding, EF-hand, cell division,	99.82
2jnf_A	158	Troponin C; stretch activated muscle contraction,	99.82
4ds7_A	147	Calmodulin, CAM; protein binding, metal binding, s	99.81
3ox6_A	153	Calcium-binding protein 1; EF-hand, calcium-sensor	99.81
1ij5_A	323	Plasmodial specific LAV1-2 protein; fourty kDa cal	99.81
2l2e_A	190	Calcium-binding protein NCS-1; NCS1P, myristoylate	99.81
1nya_A	176	Calerythrin; EF-hand, metal binding protein; NMR {	99.81
1m45_A	148	MLC1P, myosin light chain; protein-peptide complex	99.81
2f2o_A	179	Calmodulin fused with calmodulin-binding domain of	99.8
2be4_A	272	Hypothetical protein LOC449832; DR.36843, BC083168	99.8
1dtl_A	161	Cardiac troponin C; helix-turn-helix, structural p	99.8
1wdc_C	156	Scallop myosin; calcium binding protein, muscle pr	99.8
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.8
1alv_A	173	Calpain, S-camld; calcium binding, calmodulin like	99.8
2mys_C	149	Myosin; muscle protein, motor protein; HET: MLY; 2	99.8
2bl0_B	145	Myosin regulatory light chain; muscle protein, sli	99.79
2i7a_A	174	Calpain 13; calcium-dependent cytoplasmic cysteine	99.79
1s6c_A	183	KV4 potassium channel-interacting protein kchip1B;	99.79
2ovk_C	159	Myosin catalytic light chain LC-1, mantle muscle,	99.79
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.79
1s1e_A	224	KV channel interacting protein 1; kchip, calcium-b	99.79
1wdc_B	156	Scallop myosin; calcium binding protein, muscle pr	99.79
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.79
3j04_B	143	Myosin regulatory light chain 2, smooth muscle MA	99.79
1fpw_A	190	Yeast frequenin, calcium-binding protein NCS-1; EF	99.78
2znd_A	172	Programmed cell death protein 6; penta-EF-hand pro	99.78
1top_A	162	Troponin C; contractIle system protein; 1.78A {Gal	99.78
3pm8_A	197	PFCDPK2, calcium-dependent protein kinase 2; malar	99.78
2f33_A	263	Calbindin; EF-hand, Ca2+-binding, metal binding pr	99.78
1y1x_A	191	Leishmania major homolog of programmed cell death	99.78
1qv0_A	195	Obelin, OBL; photoprotein, bioluminescence, atomic	99.78
2mys_B	166	Myosin; muscle protein, motor protein; HET: MLY; 2	99.78
2ccm_A	191	Calexcitin; EF hand, calcium, signaling protein; 1	99.78
2ehb_A	207	Calcineurin B-like protein 4; protein complex, Ca(	99.78
3sjs_A	220	URE3-BP sequence specific DNA binding protein; EF-	99.77
3ll8_B	155	Calcineurin subunit B type 1; protein-peptide dock	99.77
1juo_A	198	Sorcin; calcium-binding proteins, penta-EF-hand, P	99.77
3k21_A	191	PFCDPK3, calcium-dependent protein kinase 3; calci	99.77
2hpk_A	208	Photoprotein berovin; structural genomics, PSI, pr	99.77
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.77
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.77
1w7j_B	151	Myosin light chain 1; motor protein, unconventiona	99.77
2f33_A	263	Calbindin; EF-hand, Ca2+-binding, metal binding pr	99.77
3mse_B	180	Calcium-dependent protein kinase, putative; CDPKS,	99.76
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.76
1uhk_A	191	Aequorin 2, aequorin; EF-hand motif, complex, lumi	99.76
3dtp_E	196	RLC, myosin regulatory light chain; muscle protein	99.76
1g8i_A	190	Frequenin, neuronal calcium sensor 1; calcium bind	99.76
2i7a_A	174	Calpain 13; calcium-dependent cytoplasmic cysteine	99.76
3sg6_A	450	Gcamp2, myosin light chain kinase, green fluoresce	99.76
2bec_A	202	Calcineurin B homologous protein 2; calcineurin-ho	99.76
3akb_A	166	Putative calcium binding protein; EF-hand, metal b	99.76
3khe_A	191	Calmodulin-like domain protein kinase isoform 3; c	99.76
1k94_A	165	Grancalcin; penta-EF-hand protein, calcium binding	99.76
1gjy_A	167	Sorcin, CP-22, V19; calcium binding, calcium-bindi	99.76
2ovk_B	153	RLC, myosin regulatory light chain LC-2, mantle mu	99.76
1jba_A	204	GCAP-2, protein (guanylate cyclase activating prot	99.75
2jul_A	256	Calsenilin; EF-hand, calcium, LXXLL, DNA binding p	99.75
1bjf_A	193	Neurocalcin delta; calcium-binding, myristoylation	99.75
3dd4_A	229	KV channel-interacting protein 4; EF-hands protein	99.75
1k94_A	165	Grancalcin; penta-EF-hand protein, calcium binding	99.75
1ggw_A	140	Protein (CDC4P); light chain, cytokinesis, cell cy	99.75
2r2i_A	198	Guanylyl cyclase-activating protein 1; EF hand, GC	99.75
1alv_A	173	Calpain, S-camld; calcium binding, calmodulin like	99.75
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.75
2sas_A	185	Sarcoplasmic calcium-binding protein; 2.40A {Branc	99.75
1gjy_A	167	Sorcin, CP-22, V19; calcium binding, calcium-bindi	99.74
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.74
1s6i_A	188	CDPK, calcium-dependent protein kinase SK5; EF-han	99.74
2zfd_A	226	Calcineurin B-like protein 2; calcium binding prot	99.74
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.74
1q80_A	174	SCP, sarcoplasmic calcium-binding protein; all-alp	99.73
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.73
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.73
3e3r_A	204	Calcyphosin, calcyphosine; human calcyphosine, EF-	99.73
1dgu_A	183	Calcium-saturated CIB; helical, EF-hands, blood cl	99.73
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.73
2qac_A	146	Myosin A tail domain interacting protein MTIP; mal	99.73
1juo_A	198	Sorcin; calcium-binding proteins, penta-EF-hand, P	99.72
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.72
2ggz_A	211	Guanylyl cyclase-activating protein 3; EF hand, gu	99.72
1jfj_A	134	Ehcabp, calcium-binding protein; EF-hand, helix-lo	99.72
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.72
2aao_A	166	CDPK, calcium-dependent protein kinase, isoform AK	99.72
2bl0_C	142	Myosin regulatory light chain; muscle protein, sli	99.71
3qrx_A	169	Centrin; calcium-binding, EF-hand, cell division,	99.71
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.71
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.7
3a8r_A	179	Putative uncharacterized protein; EF-hand, membran	99.7
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.7
4ds7_A	147	Calmodulin, CAM; protein binding, metal binding, s	99.7
2ct9_A	208	Calcium-binding protein P22; EF-hand, metal bindin	99.7
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.7
1dtl_A	161	Cardiac troponin C; helix-turn-helix, structural p	99.7
2l4h_A	214	Calcium and integrin-binding protein 1; metal bind	99.7
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.69
2bl0_B	145	Myosin regulatory light chain; muscle protein, sli	99.69
2lvv_A	226	Flagellar calcium-binding protein TB-24; EF-hand,	99.69
2hps_A	186	Coelenterazine-binding protein with bound coelent;	99.69
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.69
1top_A	162	Troponin C; contractIle system protein; 1.78A {Gal	99.68
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.68
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.68
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.68
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.68
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.67
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.67
3bow_A	714	Calpain-2 catalytic subunit; cysteine protease, in	99.67
3ll8_B	155	Calcineurin subunit B type 1; protein-peptide dock	99.67
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.67
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.67
3cs1_A	219	Flagellar calcium-binding protein; myristoylated,	99.67
3k21_A	191	PFCDPK3, calcium-dependent protein kinase 3; calci	99.67
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.67
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.67
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.67
3e3r_A	204	Calcyphosin, calcyphosine; human calcyphosine, EF-	99.67
2ggz_A	211	Guanylyl cyclase-activating protein 3; EF hand, gu	99.66
1m45_A	148	MLC1P, myosin light chain; protein-peptide complex	99.66
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.66
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.66
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.66
3fs7_A	109	Parvalbumin, thymic; calcium-binding protein, EF-h	99.66
3h4s_E	135	KCBP interacting Ca2+-binding protein; kinesin, mo	99.66
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.66
5pal_A	109	Parvalbumin; calcium-binding protein; 1.54A {Triak	99.66
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.65
1rwy_A	109	Parvalbumin alpha; EF-hand, calcium-binding, calci	99.65
1bu3_A	109	Calcium-binding protein; 1.65A {Merluccius bilinea	99.65
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.64
1bjf_A	193	Neurocalcin delta; calcium-binding, myristoylation	99.64
3pm8_A	197	PFCDPK2, calcium-dependent protein kinase 2; malar	99.64
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.64
1s6c_A	183	KV4 potassium channel-interacting protein kchip1B;	99.64
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.63
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.63
3dd4_A	229	KV channel-interacting protein 4; EF-hands protein	99.63
2pvb_A	108	Protein (parvalbumin); calcium binding protein, me	99.63
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.63
2d8n_A	207	Recoverin; structural genomics, NPPSFA, national p	99.62
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.62
2bec_A	202	Calcineurin B homologous protein 2; calcineurin-ho	99.62
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.62
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.62
1pva_A	110	Parvalbumin; calcium binding; 1.65A {Esox lucius}	99.62
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.62
3khe_A	191	Calmodulin-like domain protein kinase isoform 3; c	99.62
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.62
3sg6_A	450	Gcamp2, myosin light chain kinase, green fluoresce	99.61
1rro_A	108	RAT oncomodulin; calcium-binding protein; 1.30A {R	99.61
1s1e_A	224	KV channel interacting protein 1; kchip, calcium-b	99.61
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.61
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.6
3bow_A	714	Calpain-2 catalytic subunit; cysteine protease, in	99.6
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.6
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.6
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
2ehb_A	207	Calcineurin B-like protein 4; protein complex, Ca(	99.6
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.6
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.6
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.59
2be4_A	272	Hypothetical protein LOC449832; DR.36843, BC083168	99.59
2l2e_A	190	Calcium-binding protein NCS-1; NCS1P, myristoylate	99.59
3mse_B	180	Calcium-dependent protein kinase, putative; CDPKS,	99.59
1qxp_A	900	MU-like calpain; M-calpain, MU-calpain, catalytic	99.58
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.58
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.58
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.58
1jba_A	204	GCAP-2, protein (guanylate cyclase activating prot	99.58
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.58
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.58
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.58
2ct9_A	208	Calcium-binding protein P22; EF-hand, metal bindin	99.58
2qac_A	146	Myosin A tail domain interacting protein MTIP; mal	99.57
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.57
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.57
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.56
2aao_A	166	CDPK, calcium-dependent protein kinase, isoform AK	99.56
2zfd_A	226	Calcineurin B-like protein 2; calcium binding prot	99.56
2r2i_A	198	Guanylyl cyclase-activating protein 1; EF hand, GC	99.56
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.56
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.56
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.56
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.56
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.55
3a8r_A	179	Putative uncharacterized protein; EF-hand, membran	99.55
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.55
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.55
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.55
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.55
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.54
1fpw_A	190	Yeast frequenin, calcium-binding protein NCS-1; EF	99.54
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.54
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.53
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.53
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.53
1jfj_A	134	Ehcabp, calcium-binding protein; EF-hand, helix-lo	99.53
2lvv_A	226	Flagellar calcium-binding protein TB-24; EF-hand,	99.53
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.53
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.53
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.53
2jul_A	256	Calsenilin; EF-hand, calcium, LXXLL, DNA binding p	99.53
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.52
2kyc_A	108	Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand p	99.52
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.52
3a4u_B	143	Multiple coagulation factor deficiency protein 2;	99.52
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.52
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.52
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.52
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.51
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.51
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.51
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.51
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.51
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.51
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.51
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.51
1g8i_A	190	Frequenin, neuronal calcium sensor 1; calcium bind	99.51
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.51
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.51
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.51
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.51
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.5
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.5
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.5
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.5
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.49
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.49
1ij5_A	323	Plasmodial specific LAV1-2 protein; fourty kDa cal	99.49
3fs7_A	109	Parvalbumin, thymic; calcium-binding protein, EF-h	99.49
5pal_A	109	Parvalbumin; calcium-binding protein; 1.54A {Triak	99.49
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.49
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.48
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.48
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.48
2pvb_A	108	Protein (parvalbumin); calcium binding protein, me	99.48
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.48
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.48
1bu3_A	109	Calcium-binding protein; 1.65A {Merluccius bilinea	99.47
1qxp_A	900	MU-like calpain; M-calpain, MU-calpain, catalytic	99.47
2lmt_A	148	Calmodulin-related protein 97A; spermatogenesis, m	99.46
2obh_A	143	Centrin-2; DNA repair complex EF hand superfamily	99.46
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.45
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.45
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.45
1pva_A	110	Parvalbumin; calcium binding; 1.65A {Esox lucius}	99.44
1rwy_A	109	Parvalbumin alpha; EF-hand, calcium-binding, calci	99.44
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.44
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.43
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.43
1rro_A	108	RAT oncomodulin; calcium-binding protein; 1.30A {R	99.43
3u0k_A	440	Rcamp; fluorescent protein, calcium binding, EF-ha	99.43
2lv7_A	100	Calcium-binding protein 7; metal binding protein;	99.43
3h4s_E	135	KCBP interacting Ca2+-binding protein; kinesin, mo	99.42
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.42
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.41
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.41
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.39
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.39
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.39
1exr_A	148	Calmodulin; high resolution, disorder, metal trans	99.39
1s6j_A	87	CDPK, calcium-dependent protein kinase SK5; EF-han	99.39
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.39
3fwb_A	161	Cell division control protein 31; gene gating, com	99.39
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.39
2lhi_A	176	Calmodulin, serine/threonine-protein phosphatase c	99.38
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.38
1nya_A	176	Calerythrin; EF-hand, metal binding protein; NMR {	99.38
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.38
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.38
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.38
2jnf_A	158	Troponin C; stretch activated muscle contraction,	99.38
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.38
2kz2_A	94	Calmodulin, CAM; TR2C, metal binding protein; NMR	99.38
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	99.37
3ox6_A	153	Calcium-binding protein 1; EF-hand, calcium-sensor	99.37
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.36
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.36
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.35
3i5g_C	159	Myosin catalytic light chain LC-1, mantle muscle;	99.35
2ccm_A	191	Calexcitin; EF hand, calcium, signaling protein; 1	99.34
1s6i_A	188	CDPK, calcium-dependent protein kinase SK5; EF-han	99.34
2f2o_A	179	Calmodulin fused with calmodulin-binding domain of	99.34
2sas_A	185	Sarcoplasmic calcium-binding protein; 2.40A {Branc	99.33
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.32
1tiz_A	67	Calmodulin-related protein, putative; helix-turn-h	99.31
2mys_C	149	Myosin; muscle protein, motor protein; HET: MLY; 2	99.31
2hpk_A	208	Photoprotein berovin; structural genomics, PSI, pr	99.31
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.31
2kyc_A	108	Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand p	99.3
2ovk_C	159	Myosin catalytic light chain LC-1, mantle muscle,	99.3
1wdc_C	156	Scallop myosin; calcium binding protein, muscle pr	99.3
3nso_A	101	Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, meta	99.3
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.29
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.28
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.28
3j04_B	143	Myosin regulatory light chain 2, smooth muscle MA	99.28
1eg3_A	261	Dystrophin; EF-hand like domain, WW domain, struct	99.28
3akb_A	166	Putative calcium binding protein; EF-hand, metal b	99.27
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.27
3i5g_B	153	Myosin regulatory light chain LC-2, mantle muscle;	99.27
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.26
3n22_A	98	Protein S100-A2; EF-hand, calcium-binding, zinc-bi	99.26
1wlz_A	105	DJBP, CAP-binding protein complex interacting prot	99.26
2joj_A	77	Centrin protein; N-terminal domain, centrin soluti	99.26
2ktg_A	85	Calmodulin, putative; ehcam, Ca-binding protein, p	99.26
2mys_B	166	Myosin; muscle protein, motor protein; HET: MLY; 2	99.25
1avs_A	90	Troponin C; muscle contraction, calcium-activated,	99.25
2b1u_A	71	Calmodulin-like protein 5; CLSP, calmodulin-like S	99.24
3a4u_B	143	Multiple coagulation factor deficiency protein 2;	99.24
1uhk_A	191	Aequorin 2, aequorin; EF-hand motif, complex, lumi	99.24
1w7j_B	151	Myosin light chain 1; motor protein, unconventiona	99.23
1k9u_A	78	Polcalcin PHL P 7; pollen allergen, calcium-bindin	99.23
2l4h_A	214	Calcium and integrin-binding protein 1; metal bind	99.23
2jjz_A	150	Ionized calcium-binding adapter molecule 2; EF-han	99.22
2lnk_A	113	Protein S100-A4; EF-hand, calcium binding, all alp	99.22
1ggw_A	140	Protein (CDC4P); light chain, cytokinesis, cell cy	99.22
2kn2_A	92	Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco	99.22
3zwh_A	104	Protein S100-A4; Ca-binding protein-motor protein	99.22
2kld_A	123	Polycystin-2; PC2, PKD2, calcium binding domain, E	99.22
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.22
4eto_A	93	Protein S100-A4; calcium-binding protein, EF-hand,	99.21
3li6_A	66	Calcium-binding protein; calcium signaling protein	99.21
1qv0_A	195	Obelin, OBL; photoprotein, bioluminescence, atomic	99.2
1dgu_A	183	Calcium-saturated CIB; helical, EF-hands, blood cl	99.2
1wdc_B	156	Scallop myosin; calcium binding protein, muscle pr	99.19
2opo_A	86	Polcalcin CHE A 3; calcium-binding protein, dimer,	99.19
1c7v_A	81	CAVP, calcium vector protein; EF-hand family, calc	99.18
1q80_A	174	SCP, sarcoplasmic calcium-binding protein; all-alp	99.18
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.17
3rm1_A	92	Protein S100-B; alpha-helical, EF hand, metal bind	99.17
1fi6_A	92	EH domain protein REPS1; EPS15 homology domain, EF	99.17
2y5i_A	99	S100Z, S100 calcium binding protein Z; metal-bindi	99.17
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.16
1j7q_A	86	CAVP, calcium vector protein; EF-hand family, calc	99.16
1qjt_A	99	EH1, epidermal growth factor receptor substrate su	99.16
2pmy_A	91	RAS and EF-hand domain-containing protein; rasef,	99.16
2kld_A	123	Polycystin-2; PC2, PKD2, calcium binding domain, E	99.15
1c07_A	95	Protein (epidermal growth factor receptor pathway	99.15
1qx2_A	76	Vitamin D-dependent calcium-binding protein, INTE;	99.15
1j55_A	95	S-100P protein; metal binding protein; 2.00A {Homo	99.15
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.14
2d58_A	107	Allograft inflammatory factor 1; EF-hand, metal bi	99.14
2lv7_A	100	Calcium-binding protein 7; metal binding protein;	99.14
4drw_A	121	Protein S100-A10/annexin A2 chimeric protein; atyp	99.14
4drw_A	121	Protein S100-A10/annexin A2 chimeric protein; atyp	99.13
2wcb_A	95	Protein S100-A12; calcium signalling, HOST-parasit	99.13
3cs1_A	219	Flagellar calcium-binding protein; myristoylated,	99.13
3dtp_E	196	RLC, myosin regulatory light chain; muscle protein	99.13
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.12
2ovk_B	153	RLC, myosin regulatory light chain LC-2, mantle mu	99.12
1yx7_A	83	Calsensin, LAN3-6 antigen; calcium-binding protein	99.11
3nxa_A	100	Protein S100-A16; S100 family, calcium binding pro	99.11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.11
2kz2_A	94	Calmodulin, CAM; TR2C, metal binding protein; NMR	99.11
2kgr_A	111	Intersectin-1; structure, alternative splicing, ca	99.11
1wy9_A	147	Allograft inflammatory factor 1; EF-hand, calucium	99.1
1iq3_A	110	Ralbp1-interacting protein (partner of ralbp1); EF	99.08
1k2h_A	93	S100A1, S-100 protein, alpha chain; non-covalent h	99.08
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.07
2jjz_A	150	Ionized calcium-binding adapter molecule 2; EF-han	99.07
2h2k_A	106	Protein S100-A13; calcium binding protein, metal b	99.07
1eh2_A	106	EPS15; calcium binding, signaling domain, NPF bind	99.07
2kax_A	92	Protein S100-A5; EF-hand, calcium binding protien,	99.06
1s6j_A	87	CDPK, calcium-dependent protein kinase SK5; EF-han	99.06
1cb1_A	78	Calbindin D9K; calcium-binding protein; NMR {Sus s	99.05
2jq6_A	139	EH domain-containing protein 1; metal binding prot	99.05
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.04
1wy9_A	147	Allograft inflammatory factor 1; EF-hand, calucium	99.02
1h8b_A	75	ACT-EF34, alpha-actinin 2, skeletal muscle isoform	99.02
1xk4_C	113	Calgranulin B; S100 family, heterotetramer, metal	99.02
1xk4_A	93	Calgranulin A; S100 family, heterotetramer, metal	99.02
1tiz_A	67	Calmodulin-related protein, putative; helix-turn-h	99.02
1k8u_A	90	S100A6, calcyclin, CACY; calcium regulatory protei	99.0
2kn2_A	92	Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco	98.99
2opo_A	86	Polcalcin CHE A 3; calcium-binding protein, dimer,	98.99
3nso_A	101	Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, meta	98.98
1a4p_A	96	S100A10; S100 family, EF-hand protein, ligand of a	98.98
1k9u_A	78	Polcalcin PHL P 7; pollen allergen, calcium-bindin	98.98
1psr_A	100	Psoriasin, S100A7; EF-hand protein, MAD phasing, p	98.97
1xk4_C	113	Calgranulin B; S100 family, heterotetramer, metal	98.96
3n22_A	98	Protein S100-A2; EF-hand, calcium-binding, zinc-bi	98.95
2joj_A	77	Centrin protein; N-terminal domain, centrin soluti	98.93
2hps_A	186	Coelenterazine-binding protein with bound coelent;	98.93
4eto_A	93	Protein S100-A4; calcium-binding protein, EF-hand,	98.93
3li6_A	66	Calcium-binding protein; calcium signaling protein	98.93
3zwh_A	104	Protein S100-A4; Ca-binding protein-motor protein	98.93
2b1u_A	71	Calmodulin-like protein 5; CLSP, calmodulin-like S	98.93
1snl_A	103	Nucleobindin 1, calnuc; EF-hand, calcium-binding,	98.92
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	98.92
2ktg_A	85	Calmodulin, putative; ehcam, Ca-binding protein, p	98.92
1wlz_A	105	DJBP, CAP-binding protein complex interacting prot	98.91
1avs_A	90	Troponin C; muscle contraction, calcium-activated,	98.91
2pmy_A	91	RAS and EF-hand domain-containing protein; rasef,	98.91
1eg3_A	261	Dystrophin; EF-hand like domain, WW domain, struct	98.91
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.9
3nxa_A	100	Protein S100-A16; S100 family, calcium binding pro	98.9
2lnk_A	113	Protein S100-A4; EF-hand, calcium binding, all alp	98.9
1qls_A	99	S100C protein, calgizzarin; metal-binding protein/	98.89
1c7v_A	81	CAVP, calcium vector protein; EF-hand family, calc	98.89
1fi6_A	92	EH domain protein REPS1; EPS15 homology domain, EF	98.88
1qjt_A	99	EH1, epidermal growth factor receptor substrate su	98.88
1qx2_A	76	Vitamin D-dependent calcium-binding protein, INTE;	98.88
1c07_A	95	Protein (epidermal growth factor receptor pathway	98.88
2kgr_A	111	Intersectin-1; structure, alternative splicing, ca	98.87
3rm1_A	92	Protein S100-B; alpha-helical, EF hand, metal bind	98.86
1cb1_A	78	Calbindin D9K; calcium-binding protein; NMR {Sus s	98.85
1yx7_A	83	Calsensin, LAN3-6 antigen; calcium-binding protein	98.85
2y5i_A	99	S100Z, S100 calcium binding protein Z; metal-bindi	98.83
1j55_A	95	S-100P protein; metal binding protein; 2.00A {Homo	98.83
2kax_A	92	Protein S100-A5; EF-hand, calcium binding protien,	98.82
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.81
2h2k_A	106	Protein S100-A13; calcium binding protein, metal b	98.81
3fia_A	121	Intersectin-1; EH 1 domain, NESG, structural genom	98.79
1iq3_A	110	Ralbp1-interacting protein (partner of ralbp1); EF	98.79
2wcb_A	95	Protein S100-A12; calcium signalling, HOST-parasit	98.79
1k2h_A	93	S100A1, S-100 protein, alpha chain; non-covalent h	98.79
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	98.78
1j7q_A	86	CAVP, calcium vector protein; EF-hand family, calc	98.78
1xk4_A	93	Calgranulin A; S100 family, heterotetramer, metal	98.75
2d58_A	107	Allograft inflammatory factor 1; EF-hand, metal bi	98.75
1eh2_A	106	EPS15; calcium binding, signaling domain, NPF bind	98.74
2jq6_A	139	EH domain-containing protein 1; metal binding prot	98.71
1k8u_A	90	S100A6, calcyclin, CACY; calcium regulatory protei	98.71
1snl_A	103	Nucleobindin 1, calnuc; EF-hand, calcium-binding,	98.71
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.7
1qls_A	99	S100C protein, calgizzarin; metal-binding protein/	98.68
1psr_A	100	Psoriasin, S100A7; EF-hand protein, MAD phasing, p	98.62
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.62
1a4p_A	96	S100A10; S100 family, EF-hand protein, ligand of a	98.59
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.52
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	98.51
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.47
1h8b_A	75	ACT-EF34, alpha-actinin 2, skeletal muscle isoform	98.47
3fia_A	121	Intersectin-1; EH 1 domain, NESG, structural genom	98.42
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.35
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.34
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.3
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.24
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.21
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	98.21
1sra_A	151	Sparc; extracellular matrix protein, calcium-bindi	98.2
1sra_A	151	Sparc; extracellular matrix protein, calcium-bindi	98.15
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.08
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.0
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.94
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.92
1tuz_A	118	Diacylglycerol kinase alpha; transferase, HR532, n	97.88
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.84
1tuz_A	118	Diacylglycerol kinase alpha; transferase, HR532, n	97.8
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.72
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.67
1nub_A	229	Basement membrane protein BM-40; extracellular mod	97.62
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.56
1nub_A	229	Basement membrane protein BM-40; extracellular mod	97.46
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.22
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	96.87
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.77
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.66
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.46
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.01
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.44
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.39
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	95.32
1pul_A	125	Hypothetical protein C32E8.3 in chromosome I; alph	94.26
2l5y_A	150	Stromal interaction molecule 2; EF-hand, SAM domai	93.28
2kav_A	129	Sodium channel protein type 2 subunit alpha; volta	93.24
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	92.88
2jrf_A	184	Tubulin polymerization-promoting protein family me	92.36
1wlm_A	151	Protein CGI-38; structural genomics, NPPSFA, natio	92.06
2k60_A	150	Protein (stromal interaction molecule 1); EF-hand,	91.39
2l5y_A	150	Stromal interaction molecule 2; EF-hand, SAM domai	90.94
1pul_A	125	Hypothetical protein C32E8.3 in chromosome I; alph	89.95
4fl4_A	88	Glycoside hydrolase family 9; structural genomics,	89.17
4fl4_A	88	Glycoside hydrolase family 9; structural genomics,	89.07
3kev_A	199	Galieria sulfuraria DCUN1 domain-containing prote;	89.07
2ccl_B	63	Endo-1,4-beta-xylanase Y; cell adhesion, cohesin/d	88.91
3tdu_A	200	DCN1-like protein 1; E2:E3, ligase-protein binding	88.87
4dck_A	168	Sodium channel protein type 5 subunit alpha; IQ-mo	88.36
3ul4_B	65	Cellulosome enzyme, dockerin type I; cohesin, type	87.81
4dh2_B	82	Dockerin type 1; cellulosome, cohesin, type I cohe	87.67
2y3n_B	71	Cellulosomal family-48 processive glycoside hydro;	87.47
2vn6_B	64	Endoglucanase A; cell adhesion, carbohydrate metab	87.47

>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A

Probab=99.88  E-value=4.5e-22  Score=165.41  Aligned_cols=144  Identities=29%  Similarity=0.553  Sum_probs=119.7

Q ss_pred             eecccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCHHHH
Q psy2947         259 FTFKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEV  336 (441)
Q Consensus       259 ~l~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~  336 (441)
                      .++++++.+++++|..+|.+  |.| +..|++.+++.++..+                                 ...++
T Consensus         3 ~lt~eqi~el~~~F~~~D~d~~G~I-~~~El~~~l~~~~~~~---------------------------------~~~~~   48 (148)
T 2lmt_A            3 ELTEEQIAEFKDAFVQFDKEGTGKI-ATRELGTLMRTLGQNP---------------------------------TEAEL   48 (148)
T ss_dssp             SCCSHHHHHHHHHHHHHHCSSCCEE-EGGGHHHHHHHHTCCC---------------------------------CHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCCeE-CHHHHHHHHHhcCCCc---------------------------------hHHHH
Confidence            35566777777777777664  566 5666666666655433                                 44556


Q ss_pred             HHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q psy2947         337 VDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREA  416 (441)
Q Consensus       337 ~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~  416 (441)
                      ..++..+|.+++|.|++.||...+..........+.++.+|+.+|.|++|+|+.+||++++..+|.++++++++.+++.+
T Consensus        49 ~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~aF~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~~~  128 (148)
T 2lmt_A           49 QDLIAEAENNNNGQLNFTEFCGIMAKQMRETDTEEEMREAFKIFDRDGDGFISPAELRFVMINLGEKVTDEEIDEMIREA  128 (148)
T ss_dssp             HHHHHHHHTTSTTEEEHHHHHHHHHHTTTTTTTHHHHHHHHHHHHSSCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred             HHHHHhcccCCCCcccHHHHHHHHHHHhcccCcHHHHHHHHHHHCCCCcCcCcHHHHHHHHHHcCccccHHHHHHHHHHh
Confidence            66677789999999999999998887766666678899999999999999999999999999999999999999999999


Q ss_pred             CCCCCCceeHHHHHHHHhcc
Q psy2947         417 NVTMNSKVRYEDFVKIACAP  436 (441)
Q Consensus       417 d~d~dg~i~~~ef~~~l~~~  436 (441)
                      |.|+||.|+|+||+++|.++
T Consensus       129 D~d~dG~I~~~EF~~~m~~K  148 (148)
T 2lmt_A          129 DFDGDGMINYEEFVWMISQK  148 (148)
T ss_dssp             CCSCCSSEEHHHHHHHHTTC
T ss_pred             CCCCCCeEeHHHHHHHHhcC
Confidence            99999999999999999864

>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}

Probab=99.87  E-value=8.4e-22  Score=168.51  Aligned_cols=144  Identities=34%  Similarity=0.568  Sum_probs=123.5

Q ss_pred             ceecccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCHHH
Q psy2947         258 VFTFKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKE  335 (441)
Q Consensus       258 ~~l~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~  335 (441)
                      ..++++++.+++++|..+|.+  |.| +.+|++.+++.++..++..+                                 
T Consensus         3 ~~Lt~eqi~elk~~F~~~D~d~dG~I-~~~El~~~l~~lg~~~~~~~---------------------------------   48 (176)
T 2lhi_A            3 SNLTEEQIAEFKEAFALFDKDNNGSI-SSSELATVMRSLGLSPSEAE---------------------------------   48 (176)
T ss_dssp             CCCCTTGGGHHHHHHHTTCSSCSSCB-CHHHHHHHHHHHTCCCCHHH---------------------------------
T ss_pred             CcCCHHHHHHHHHHHHHHCCCCCCCC-CHHHHHHHHHHcCCChhHHH---------------------------------
Confidence            356788999999999999976  788 89999999988886554444                                 


Q ss_pred             HHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHH
Q psy2947         336 VVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFRE  415 (441)
Q Consensus       336 ~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~  415 (441)
                      +..++..+|.+++|.|++.||..++..........+.+..+|+.||.|++|+|+.+||++++..+|.++++++++++++.
T Consensus        49 ~~~~~~~~d~d~~~~i~~~ef~~~~~~~~~~~~~~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~~~~~~ei~~l~~~  128 (176)
T 2lhi_A           49 VNDLMNEIDVDGNHQIEFSEFLALMSRQLKSNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDDMLRE  128 (176)
T ss_dssp             HHHHHTTTCSSCSSSBCTTHHHHHHTSSCCSSHHHHHHHHHHHHHCSSCSSSBCHHHHHHHHHTTTCCCCHHHHHHHHHH
T ss_pred             HHHHHHHhCcCCCccchHHHHHHHHHHhcccCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCcccchHHHHHHHHh
Confidence            44555568999999999999998887665444456789999999999999999999999999999999999999999999


Q ss_pred             hCCCCCCceeHHHHHHHHhcc
Q psy2947         416 ANVTMNSKVRYEDFVKIACAP  436 (441)
Q Consensus       416 ~d~d~dg~i~~~ef~~~l~~~  436 (441)
                      +| |+||.|+|+||+++|.+.
T Consensus       129 ~d-d~dG~I~~~EF~~~m~k~  148 (176)
T 2lhi_A          129 VS-DGSGEINIQQFAALLSKG  148 (176)
T ss_dssp             HH-TTSSCBCTTHHHHHHTCC
T ss_pred             hc-CCCCeEeHHHHHHHHHhc
Confidence            99 999999999999999764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.87  E-value=4.4e-23  Score=193.72  Aligned_cols=153  Identities=19%  Similarity=0.284  Sum_probs=116.0

Q ss_pred             CCCCccCeeEEeeccccCCCCCcCCCCCCCCCCCcCCCCCcc-CCCCccCCC--------------------CCC---CC
Q psy2947           4 PAKNNEGFQATRNKQGVGFSRRSSFKNKNSTPQTACQRNCSL-EVGGICSHI--------------------WIP---QY   59 (441)
Q Consensus         4 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~c~~-~~~~~c~~~--------------------~~~---~~   59 (441)
                      .+.+.|..||++||+++..+ . .+.+|....  .|   |.| |.|+.|...                    .+|   ..
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~-~-~l~~W~~~~--~~---C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~   74 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNP-T-TLSSWLPTT--DC---CNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLAN   74 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCC-G-GGTTCCTTS--CT---TTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGG
T ss_pred             CCCHHHHHHHHHHHHhcCCc-c-cccCCCCCC--CC---CcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhC
Confidence            56788999999999999644 3 567786532  23   443 578888632                    122   24


Q ss_pred             CCcccEEeccC-C----CcCcccCCCCCCCEEEccCCCCC-cCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCE
Q psy2947          60 FSHAFLLSLSY-T----PIGRRIFKCDTVEVLSLKSNSLT-SLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTH  133 (441)
Q Consensus        60 l~~L~~l~l~~-n----~i~~~~~~l~~L~~L~l~~n~l~-~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~  133 (441)
                      +++|+.|++++ |    .+|..+..+++|++|+|++|.++ .+|..|..+++|++|++++|.++ +.+|..+..+++|++
T Consensus        75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~  153 (313)
T 1ogq_A           75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS-GTLPPSISSLPNLVG  153 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEE-SCCCGGGGGCTTCCE
T ss_pred             CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccC-CcCChHHhcCCCCCe
Confidence            67788888874 5    56777788888888888888887 77777888888888888888887 678888888888888


Q ss_pred             EEccCCCCC-ccchhhcCCC-CCCEEEccCCcC
Q psy2947         134 LYLDNNLLD-ALPGFLLSMP-QLDTVYRHGNHN  164 (441)
Q Consensus       134 L~l~~n~l~-~lp~~~~~l~-~L~~L~l~~N~~  164 (441)
                      |++++|+++ .+|..++.++ +|+.|++++|.+
T Consensus       154 L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l  186 (313)
T 1ogq_A          154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             EECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             EECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence            888888885 7787888877 788888888875

>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C

Probab=99.86  E-value=1.7e-21  Score=163.68  Aligned_cols=147  Identities=24%  Similarity=0.438  Sum_probs=120.9

Q ss_pred             eecccchHHHHHhhhcccc----CCCccCHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCHH
Q psy2947         259 FTFKTPYLEFRECFFLFAR----NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPK  334 (441)
Q Consensus       259 ~l~~~~~~~l~~~f~~~d~----~G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~  334 (441)
                      +++++++.+++++|..+|.    +|.| +..+++.+++.+|..++..++..+..                          
T Consensus         2 qLt~eqi~elre~F~~fD~~~d~dG~I-~~~El~~~lr~lG~~~t~~el~~~~~--------------------------   54 (159)
T 3i5g_C            2 QLTKDEIEEVREVFDLFDFWDGRDGDV-DAAKVGDLLRCLGMNPTEAQVHQHGG--------------------------   54 (159)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTTSSSCE-EGGGHHHHHHHTTCCCCHHHHHTTTC--------------------------
T ss_pred             CCCHHHHHHHHHHHHHHCcCCCCCCeE-CHHHHHHHHHHcCCCCCHHHHHHHHc--------------------------
Confidence            4678899999999999883    4899 78999999999998887776655431                          


Q ss_pred             HHHHHHHhhcCCCCCcccHHHHHHHHHhhcc--CCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHH
Q psy2947         335 EVVDAFKAADTTKSGKLSFPDFLKVMHTHSK--AEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQI  412 (441)
Q Consensus       335 ~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~--~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l  412 (441)
                              .|.+++|.|+++||..++.....  .....++++.+|+.||++++|+|+.+||+++|..+|.++++++++.+
T Consensus        55 --------~d~~~~g~i~f~eFl~~~~~~~~~~~~~~~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~~ls~~e~~~l  126 (159)
T 3i5g_C           55 --------TKKMGEKAYKLEEILPIYEEMSSKDTGTAADEFMEAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDI  126 (159)
T ss_dssp             --------CSSTTSCEECHHHHHHHHHHHTTCCTTCCHHHHHHHHHHHCTTSSSEECHHHHHHHHHHSSSCCCHHHHHHH
T ss_pred             --------ccccCCCcccHHHHHHHHHHhhcccccchHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhCCCCCHHHHHHH
Confidence                    35567778888888777765432  22335789999999999999999999999999999999999999999


Q ss_pred             HHHhCC--CCCCceeHHHHHHHHh-ccCCCC
Q psy2947         413 FREANV--TMNSKVRYEDFVKIAC-APVPDY  440 (441)
Q Consensus       413 ~~~~d~--d~dg~i~~~ef~~~l~-~~~~~~  440 (441)
                      ++.+|.  |++|.|+|+||+++|. .++|+.
T Consensus       127 ~~~~D~~~d~dG~I~~~EF~~~m~~~p~pd~  157 (159)
T 3i5g_C          127 FTFCDIREDIDGNIKYEDLMKKVMAGPFPDK  157 (159)
T ss_dssp             HHHTTCCCCSSCCEEHHHHHHHHHHCSCCC-
T ss_pred             HHHhCcCCCCCCeEeHHHHHHHHHCCCCCCC
Confidence            999995  8899999999998775 568764

>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}

Probab=99.86  E-value=2.5e-21  Score=181.38  Aligned_cols=144  Identities=38%  Similarity=0.653  Sum_probs=119.9

Q ss_pred             eecccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCHHHH
Q psy2947         259 FTFKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEV  336 (441)
Q Consensus       259 ~l~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~  336 (441)
                      .++++++++++++|..+|.+  |.| +.+|++.+++.++..++                                 .+++
T Consensus       295 ~Lt~EEI~ELREaF~~fDkDgdG~I-S~eELk~aLrsLG~~~T---------------------------------eeEI  340 (440)
T 3u0k_A          295 QLTEEQIAEFKEAFSLFDKDGDGTI-TTKELGTVMRSLGQNPT---------------------------------EAEL  340 (440)
T ss_dssp             CCCHHHHHHHHHHHHHHCTTCSSEE-CHHHHHHHHHHTTCCCC---------------------------------HHHH
T ss_pred             hhhHHHHHHHHHHHHHHcCCCCCEE-CHHHHHHHHHHcCCCCC---------------------------------HHHH
Confidence            45678888999999888876  778 78888888888775443                                 4455


Q ss_pred             HHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q psy2947         337 VDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREA  416 (441)
Q Consensus       337 ~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~  416 (441)
                      ..+|+.+|.|++|.|+++||..++.........+++++.+|+.+|.|++|+|+.+||++++..+|..+++++++++|+.+
T Consensus       341 ~~Lf~~~D~DgDG~IdFeEFl~lms~~lk~~d~eeeLreAFk~fDkDgdG~IS~eELr~vL~~lGe~LSdeEIdeLfke~  420 (440)
T 3u0k_A          341 QDMINEVDADGDGTIDFPEFLIMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA  420 (440)
T ss_dssp             HHHHHHHCSSCSSSEEHHHHHHHHHTC------CHHHHHHHHHHCTTCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCCcCcHHHHHHHHHHHhcCCChHHHHHHHHHHHCCCCcCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence            56667799999999999999998876655555568899999999999999999999999999999999999999999999


Q ss_pred             CCCCCCceeHHHHHHHHhcc
Q psy2947         417 NVTMNSKVRYEDFVKIACAP  436 (441)
Q Consensus       417 d~d~dg~i~~~ef~~~l~~~  436 (441)
                      |.|+||.|+|+||+++|.++
T Consensus       421 D~DgDGkIsyeEFvkmMtSK  440 (440)
T 3u0k_A          421 DIDGDGQVNYEEFVQMMTAK  440 (440)
T ss_dssp             CTTCSSSEEHHHHHHHHC--
T ss_pred             CCCCCCcEeHHHHHHHhCCC
Confidence            99999999999999999753

>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A

Probab=99.85  E-value=4.7e-21  Score=158.27  Aligned_cols=125  Identities=26%  Similarity=0.448  Sum_probs=98.1

Q ss_pred             hCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcc
Q psy2947         309 EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTV  388 (441)
Q Consensus       309 ~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i  388 (441)
                      +++|.|+.+||..++.... ...+.+++..+|+.+|.|++|.|+++||..++..........+.++.+|+.+|+|++|+|
T Consensus        18 d~~G~I~~~el~~~l~~~g-~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I   96 (143)
T 2obh_A           18 DGTGTIDVKELKVAMRALG-FEPKKEEIKKMISEIDKEGTGKMNFGDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKI   96 (143)
T ss_dssp             TCCSEEEGGGHHHHHHHTT-CCCCHHHHHHHHHHHTTTCCSEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSSB
T ss_pred             CCCCcCcHHHHHHHHHHcC-CCCCHHHHHHHHHHhCCCCCCeeeHHHHHHHHHHHhccccHHHHHHHHHHHhCCCCCCcC
Confidence            3344444444444443321 224556677777889999999999999998876543222224678899999999999999


Q ss_pred             cHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         389 PAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       389 s~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      +.+||++++..+|..+++++++.+++.+|.|+||.|+|+||+.+|.
T Consensus        97 ~~~el~~~l~~~g~~~~~~~~~~~~~~~D~d~dG~I~~~eF~~~~~  142 (143)
T 2obh_A           97 SFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQEFLRIMK  142 (143)
T ss_dssp             CHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTSSSSBCHHHHHHHHC
T ss_pred             cHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHc
Confidence            9999999999999999999999999999999999999999999875

>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8

Probab=99.85  E-value=6.6e-20  Score=159.18  Aligned_cols=155  Identities=16%  Similarity=0.280  Sum_probs=137.1

Q ss_pred             hHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHH----hCCCcccHHHHHHHHHhhcCCCCCHHHHHH
Q psy2947         265 YLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLA----EKGGKLSFPDFLKVMHTHSKAEDIPKEVVD  338 (441)
Q Consensus       265 ~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~  338 (441)
                      ..+++++|..+|.+  |.| +.+|+..++...+..++..++..++.    +++|.|+++||..++...       ..++.
T Consensus        26 ~~~l~~~F~~~D~d~~G~I-~~~El~~~l~~~~~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~~~~~-------~~~~~   97 (191)
T 1y1x_A           26 NQELMEWFRAVDTDGSGAI-SVPELNAALSSAGVPFSLATTEKLLHMYDKNHSGEITFDEFKDLHHFI-------LSMRE   97 (191)
T ss_dssp             TSCHHHHHHHHCTTCSSSB-CHHHHHHHHCBTTBCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHH-------HHHHH
T ss_pred             HHHHHHHHHHHcCCCCCcC-cHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHH-------HHHHH
Confidence            56788999999976  889 89999999977777788888887775    689999999999998753       67999


Q ss_pred             HHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Q psy2947         339 AFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANV  418 (441)
Q Consensus       339 ~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~  418 (441)
                      +|+.+|.|++|.|+.+||..++... +.....+++..+|+.+|.|++|.|+++||..++...      ..+..+|+.+|.
T Consensus        98 ~F~~~D~d~~G~i~~~e~~~~l~~~-g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~~~------~~~~~~F~~~D~  170 (191)
T 1y1x_A           98 GFRKRDSSGDGRLDSNEVRAALLSS-GYQVSEQTFQALMRKFDRQRRGSLGFDDYVELSIFV------CRVRNVFAFYDR  170 (191)
T ss_dssp             HHHHHCTTSSSCBCHHHHHHHHHTT-SCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHH------HHHHHHHHHHCT
T ss_pred             HHHHhCCCCCCeEcHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHH------HHHHHHHHHhCc
Confidence            9999999999999999999999876 345567899999999999999999999999999864      678899999999


Q ss_pred             CCCCc--eeHHHHHHHHh
Q psy2947         419 TMNSK--VRYEDFVKIAC  434 (441)
Q Consensus       419 d~dg~--i~~~ef~~~l~  434 (441)
                      |++|.  ++++||+.++.
T Consensus       171 d~dG~i~~~~~eF~~~~~  188 (191)
T 1y1x_A          171 ERTGQVTFTFDTFIGGSV  188 (191)
T ss_dssp             TCCSEEEEEHHHHHHHHH
T ss_pred             CCCceEEeeHHHHHHHHH
Confidence            99999  78999999875

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.85  E-value=6.3e-23  Score=193.84  Aligned_cols=200  Identities=13%  Similarity=0.110  Sum_probs=95.7

Q ss_pred             CCCCccCeeEEeeccccCCCCCcCCCCCCCCCCCcCCCCCccCCCCccCCCCC---CCCCCcccEEeccCC---CcCccc
Q psy2947           4 PAKNNEGFQATRNKQGVGFSRRSSFKNKNSTPQTACQRNCSLEVGGICSHIWI---PQYFSHAFLLSLSYT---PIGRRI   77 (441)
Q Consensus         4 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~c~~~~~~~c~~~~~---~~~l~~L~~l~l~~n---~i~~~~   77 (441)
                      ++.++|..||++||.++..++......|.... ...+..|+ |.|+.|.....   .....+++.|+|++|   .+|..+
T Consensus        23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~-~~~~~~~~-~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~~lp~~l  100 (328)
T 4fcg_A           23 TALRPYHDVLSQWQRHYNADRNRWHSAWRQAN-SNNPQIET-RTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQA  100 (328)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHT-TTCTTSCC-SHHHHHHHHHHHHHHHTSTTCCEEEEESSCCSSCCSCG
T ss_pred             ccCchHHHHHHHHHHhccCCchhhhhhhcccc-cccccccc-cCCcchhhhHHHHhcccccceeEEEccCCCchhcChhh
Confidence            45578889999999998777765555673110 00111243 35666642100   001234455555554   334444


Q ss_pred             CCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEccCCCC-CccchhhcC------
Q psy2947          78 FKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLL-DALPGFLLS------  150 (441)
Q Consensus        78 ~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l-~~lp~~~~~------  150 (441)
                      +.+++|++|+|++|.++.+|..++.+++|++|++++|.++  .+|..+..+++|++|++++|++ +.+|..+..      
T Consensus       101 ~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~  178 (328)
T 4fcg_A          101 FRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE  178 (328)
T ss_dssp             GGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred             hhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence            4455555555555555555554555555555555555554  4455555555555555554332 344433322      


Q ss_pred             ---CCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCchhhhhhhhcccccccc
Q psy2947         151 ---MPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSRLQDLAVQSVIASKEN  217 (441)
Q Consensus       151 ---l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~l~~l~~l~~l~l~~n  217 (441)
                         +++|+.|++++|.+.          .+|..+..++.+..+ +.+|.+..+|+.+..++.|+.|++++|
T Consensus       179 ~~~l~~L~~L~L~~n~l~----------~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n  239 (328)
T 4fcg_A          179 HQGLVNLQSLRLEWTGIR----------SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGC  239 (328)
T ss_dssp             EEESTTCCEEEEEEECCC----------CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTC
T ss_pred             hccCCCCCEEECcCCCcC----------cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCC
Confidence               444555555554431          223333333333333 444444444444444444444444443

>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B

Probab=99.84  E-value=9.2e-21  Score=158.06  Aligned_cols=141  Identities=28%  Similarity=0.493  Sum_probs=121.4

Q ss_pred             ceecccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCHHH
Q psy2947         258 VFTFKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKE  335 (441)
Q Consensus       258 ~~l~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~  335 (441)
                      ..++++++.+++++|..+|.+  |.| +..+++.+++.++..++..++..++.+.+|.|++++|..++...         
T Consensus         8 ~~Lt~~qi~elk~~F~~~D~d~dG~I-~~~El~~~l~~lg~~~~~~~~~~~~~~~~~~i~f~ef~~~~~~~---------   77 (153)
T 3i5g_B            8 VKLSQRQMQELKEAFTMIDQDRDGFI-GMEDLKDMFSSLGRVPPDDELNAMLKECPGQLNFTAFLTLFGEK---------   77 (153)
T ss_dssp             TTCCHHHHHHHHHHHHHHCCSTTSCC-CHHHHHHHHHHTTSCCCHHHHHHHHHTSSSCCCSHHHHHTTTTT---------
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCCCeE-cHHHHHHHHHHcCCCccHHHHHHHHHhccCCccHHHHHHHHHhh---------
Confidence            457899999999999999986  889 89999999999999999999888887777777777777666433         


Q ss_pred             HHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHH
Q psy2947         336 VVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFRE  415 (441)
Q Consensus       336 ~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~  415 (441)
                                                  .......+.++.+|+.||.|++|+|+.+||+++|..+|.++++++++.+++.
T Consensus        78 ----------------------------~~~~~~~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~~ls~~ei~~~~~~  129 (153)
T 3i5g_B           78 ----------------------------VSGTDPEDALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVWKD  129 (153)
T ss_dssp             ----------------------------TTTCCCHHHHHHHHHTTCSSCSSCCCHHHHHHHHHSSSSCCCHHHHHHHHTT
T ss_pred             ----------------------------hcccccHHHHHHHHhccccCCCCeEeHHHHHHHHHHcCCcCCHHHHHHHHHH
Confidence                                        1222335678899999999999999999999999999999999999999999


Q ss_pred             hCCCCCCceeHHHHHHHHhccC
Q psy2947         416 ANVTMNSKVRYEDFVKIACAPV  437 (441)
Q Consensus       416 ~d~d~dg~i~~~ef~~~l~~~~  437 (441)
                      +|.+ ||.|+|+||+++|.+.-
T Consensus       130 ~D~~-dG~I~y~EF~~~m~~~~  150 (153)
T 3i5g_B          130 APLK-NKQFNYNKMVDIKGKAE  150 (153)
T ss_dssp             CCEE-TTEECHHHHHHHHHCSC
T ss_pred             hCCC-cCEEcHHHHHHHhcCCC
Confidence            9987 99999999999998653

>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...

Probab=99.84  E-value=1.9e-20  Score=155.48  Aligned_cols=126  Identities=30%  Similarity=0.585  Sum_probs=100.3

Q ss_pred             hCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcc
Q psy2947         309 EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTV  388 (441)
Q Consensus       309 ~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i  388 (441)
                      +++|.|+.+||..++.... ...+..++..+|+.+|.|++|.|+++||..++..........+.+..+|+.+|++++|.|
T Consensus        22 d~~G~i~~~el~~~l~~~g-~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I  100 (148)
T 1exr_A           22 DGDGTITTKELGTVMRSLG-QNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKEQDSEEELIEAFKVFDRDGNGLI  100 (148)
T ss_dssp             TCSSEECHHHHHHHHHHHT-CCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCSSCB
T ss_pred             CCCCcCcHHHHHHHHHHcC-CCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHhcccCCCcHHHHHHHHHHhCCCCCCcC
Confidence            3444444444444444331 224556677788889999999999999998876543222234678899999999999999


Q ss_pred             cHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         389 PAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       389 s~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      +.+||++++..+|.++++++++.+++.+|.|++|.|+|+||+++|..
T Consensus       101 ~~~el~~~l~~~g~~~~~~~~~~~~~~~d~d~dg~i~~~eF~~~~~~  147 (148)
T 1exr_A          101 SAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYEEFVRMMVS  147 (148)
T ss_dssp             CHHHHHHHHHHTTCCCCHHHHHHHHHHHCSSSSSSBCHHHHHHHHHC
T ss_pred             CHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHcc
Confidence            99999999999999999999999999999999999999999999864

>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein STR and functional analyses, riken structural genomics/proteomi initiative; 2.20A {Homo sapiens} PDB: 2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A 2het_A

Probab=99.84  E-value=1.3e-19  Score=159.44  Aligned_cols=155  Identities=15%  Similarity=0.275  Sum_probs=132.6

Q ss_pred             cCCCccCHHHHHHHHHHcCCCcCHHHHHHHHH----h-CCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcc
Q psy2947         277 RNGTIKTLDELSVIMRSLGMSPTIAELKKYLA----E-KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKL  351 (441)
Q Consensus       277 ~~G~i~~~~el~~~~~~~~~~~~~~~~~~~~~----~-~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i  351 (441)
                      .+|.+ +.++++.+++.++  ++..++..++.    + ++|.|+++||..++........+...+..+|+.+|.|++|.|
T Consensus        12 ~~g~l-~~~el~~~~~~~~--~~~~~i~~~f~~~d~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d~~G~i   88 (207)
T 2d8n_A           12 KSGAL-SKEILEELQLNTK--FSEEELCSWYQSFLKDCPTGRITQQQFQSIYAKFFPDTDPKAYAQHVFRSFDSNLDGTL   88 (207)
T ss_dssp             CTTCC-CHHHHHHHHHHSS--CCHHHHHHHHHHHHHHCTTSEEEHHHHHHHHHHTCTTSCCHHHHHHHHHHHCTTCCSEE
T ss_pred             cCCCC-CHHHHHHHHHHcC--CCHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHhccCCCcHHHHHHHHHHhcCCCCCeE
Confidence            34788 8999999999877  46666666553    5 799999999999999876555678899999999999999999


Q ss_pred             cHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh----C----CCCCH------HHHHHHHHHhC
Q psy2947         352 SFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW----G----EGLSS------KEVDQIFREAN  417 (441)
Q Consensus       352 ~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~----~----~~l~~------~~~~~l~~~~d  417 (441)
                      +++||..++..... ....+.++.+|+.+|.|++|.|+++||++++..+    |    .++++      ++++.+|+.+|
T Consensus        89 ~~~Ef~~~~~~~~~-~~~~~~~~~~f~~~D~d~~G~I~~~E~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~f~~~D  167 (207)
T 2d8n_A           89 DFKEYVIALHMTTA-GKTNQKLEWAFSLYDVDGNGTISKNEVLEIVMAIFKMITPEDVKLLPDDENTPEKRAEKIWKYFG  167 (207)
T ss_dssp             EHHHHHHHHHHHSC-SSSSTTHHHHHHHHCTTCSSEECHHHHHHHHHHHHHHSCHHHHHTSCTTTSSHHHHHHHHHHHTT
T ss_pred             eHHHHHHHHHHHcC-CCHHHHHHHHHHHhcCCCCCeEcHHHHHHHHHHHHHHhccccCCCcccccccHHHHHHHHHHHcC
Confidence            99999999987643 3446789999999999999999999999999986    6    55553      67999999999


Q ss_pred             CCCCCceeHHHHHHHHhc
Q psy2947         418 VTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       418 ~d~dg~i~~~ef~~~l~~  435 (441)
                      .|++|.|+|+||++++.+
T Consensus       168 ~d~dG~I~~~Ef~~~~~~  185 (207)
T 2d8n_A          168 KNDDDKLTEKEFIEGTLA  185 (207)
T ss_dssp             CCTTCCEEHHHHHHHHHH
T ss_pred             CCCCCcCcHHHHHHHHHh
Confidence            999999999999999864

>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A

Probab=99.83  E-value=1.3e-19  Score=154.41  Aligned_cols=159  Identities=13%  Similarity=0.182  Sum_probs=137.7

Q ss_pred             cchHHHHHhhhccccC--CCccCHHHHHHHHHHcC-CCcCHHHHHHHHH----hCCCcccHHHHHHHHHhhcCCCCCHHH
Q psy2947         263 TPYLEFRECFFLFARN--GTIKTLDELSVIMRSLG-MSPTIAELKKYLA----EKGGKLSFPDFLKVMHTHSKAEDIPKE  335 (441)
Q Consensus       263 ~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~-~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~~~~~~~~~  335 (441)
                      .+..+++++|..+|.+  |.| +.+|+..+++.++ ..++..++..++.    +++|.|+++||..++...       ..
T Consensus         4 ~~~~~l~~~F~~~D~d~~G~i-~~~e~~~~l~~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~ef~~~~~~~-------~~   75 (172)
T 2znd_A            4 PDQSFLWNVFQRVDKDRSGVI-SDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYI-------TD   75 (172)
T ss_dssp             --CHHHHHHHHHHCTTCSSCE-EHHHHHHHCCCSSSSCCCHHHHHHHHHHHCSSSSSEECHHHHHHHHHHH-------HH
T ss_pred             cchhHHHHHHHHhCCCCCCcC-cHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHH-------HH
Confidence            3567899999999976  888 8999999999887 6678888877664    688999999999998753       67


Q ss_pred             HHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHH
Q psy2947         336 VVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFRE  415 (441)
Q Consensus       336 ~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~  415 (441)
                      ++.+|+.+|.|++|.|+.+||..++... +.....+.+..+|+.+|.+++|.|+++||..++...      +.+..+|+.
T Consensus        76 ~~~~F~~~D~d~~G~i~~~el~~~l~~~-g~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~~~~------~~~~~~F~~  148 (172)
T 2znd_A           76 WQNVFRTYDRDNSGMIDKNELKQALSGF-GYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVL------QRLTDIFRR  148 (172)
T ss_dssp             HHHHHHHHCTTCSSEECHHHHHHHHHHT-TCCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHH------HHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCccCHHHHHHHHHHc-CCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH------HHHHHHHHH
Confidence            9999999999999999999999999876 344567889999999999999999999999999865      678999999


Q ss_pred             hCCCCCCcee--HHHHHHHHhcc
Q psy2947         416 ANVTMNSKVR--YEDFVKIACAP  436 (441)
Q Consensus       416 ~d~d~dg~i~--~~ef~~~l~~~  436 (441)
                      +|.|++|.|+  ++||+.++...
T Consensus       149 ~D~d~dG~i~~~~~ef~~~~~~~  171 (172)
T 2znd_A          149 YDTDQDGWIQVSYEQYLSMVFSI  171 (172)
T ss_dssp             HCTTSSSCCCCCHHHHHHHHHTC
T ss_pred             hCCCCCCeEeeeHHHHHHHHHhc
Confidence            9999999995  89999887653

>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A

Probab=99.83  E-value=1.4e-19  Score=152.39  Aligned_cols=144  Identities=25%  Similarity=0.395  Sum_probs=118.8

Q ss_pred             ceecccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCHHH
Q psy2947         258 VFTFKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKE  335 (441)
Q Consensus       258 ~~l~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~  335 (441)
                      ..+++.++..++++|..+|.+  |.| +.+++..+++.++..                                 .+.+.
T Consensus        15 ~~l~~~~~~~l~~~F~~~D~~~~G~i-~~~e~~~~l~~~~~~---------------------------------~~~~~   60 (161)
T 3fwb_A           15 SELLEEQKQEIYEAFSLFDMNNDGFL-DYHELKVAMKALGFE---------------------------------LPKRE   60 (161)
T ss_dssp             TTSCHHHHHHHHHHHHHHCTTSSSEE-CHHHHHHHHHHTTCC---------------------------------CCHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCcC-cHHHHHHHHHHcCCC---------------------------------CCHHH
Confidence            345566777777777777654  566 666666666665432                                 44566


Q ss_pred             HHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHH
Q psy2947         336 VVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFRE  415 (441)
Q Consensus       336 ~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~  415 (441)
                      +..+|+.+|.+++|.|+++||..++..........+.++.+|+.+|.+++|.|+.+||++++..+|..+++++++.+++.
T Consensus        61 ~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~  140 (161)
T 3fwb_A           61 ILDLIDEYDSEGRHLMKYDDFYIVMGEKILKRDPLDEIKRAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMIEE  140 (161)
T ss_dssp             HHHHHHHHCTTSSSCEEHHHHHHHHHHHHHTCCHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHT
T ss_pred             HHHHHHHhCcCCCCeEeHHHHHHHHHHHHhcCCcHHHHHHHHHHHcCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence            77788889999999999999999887654555556789999999999999999999999999999999999999999999


Q ss_pred             hCCCCCCceeHHHHHHHHhc
Q psy2947         416 ANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       416 ~d~d~dg~i~~~ef~~~l~~  435 (441)
                      +|.|++|.|+|+||+.++.+
T Consensus       141 ~d~~~~g~i~~~eF~~~~~~  160 (161)
T 3fwb_A          141 FDLDGDGEINENEFIAICTD  160 (161)
T ss_dssp             TCSSSSSSEEHHHHHHHHHH
T ss_pred             hCCCCCCcCcHHHHHHHHhc
Confidence            99999999999999999865

>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=99.82  E-value=1.6e-19  Score=148.71  Aligned_cols=125  Identities=25%  Similarity=0.466  Sum_probs=107.2

Q ss_pred             HhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCc
Q psy2947         308 AEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGT  387 (441)
Q Consensus       308 ~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~  387 (441)
                      .+++|.|+.+||..++... ....+...+..+|+.+|.|++|.|+++||..++..........+.++.+|+.+|++++|.
T Consensus        17 ~d~~G~i~~~el~~~l~~~-~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~   95 (142)
T 2bl0_C           17 SERTGFITKEGLQTVLKQF-GVRVEPAAFNEMFNEADATGNGKIQFPEFLSMMGRRMKQTTSEDILRQAFRTFDPEGTGY   95 (142)
T ss_dssp             TTCSSEEEHHHHHHHHHHH-TCCCCHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHHTTCCCHHHHHHHHHHTCCSSCSC
T ss_pred             CCCCCcCcHHHHHHHHHHh-CCCCCHHHHHHHHHHhCcCCCCeeeHHHHHHHHHHHhcCCChHHHHHHHHHHHCCCCCCc
Confidence            4566667777776666654 234566778889999999999999999999998875445556788999999999999999


Q ss_pred             ccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         388 VPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       388 is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      |+.+||+.++..+|.++++++++.+++.+| |++|.|+|+||+++|.
T Consensus        96 i~~~el~~~l~~~g~~~~~~~~~~~~~~~d-~~dg~i~~~eF~~~~~  141 (142)
T 2bl0_C           96 IPKAALQDALLNLGDRLKPHEFAEFLGITE-TEKGQIRYDNFINTMF  141 (142)
T ss_dssp             EEHHHHHHHHHHSSSCCCHHHHHHHHHHHC-CSSSEECSHHHHTTTC
T ss_pred             CcHHHHHHHHHHcCCCCCHHHHHHHHHHhC-CCCCcEeHHHHHHHHc
Confidence            999999999999999999999999999999 9999999999998764

>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A

Probab=99.82  E-value=1.3e-19  Score=160.85  Aligned_cols=163  Identities=11%  Similarity=0.125  Sum_probs=142.8

Q ss_pred             cceecccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHH----hCCCcccHHHHHHHHHhhcCCC
Q psy2947         257 KVFTFKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLA----EKGGKLSFPDFLKVMHTHSKAE  330 (441)
Q Consensus       257 ~~~l~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~~~~  330 (441)
                      ...++.++...+++.|..+|.+  |.| +.+|+..+++.++..++..++..++.    +++|.|+++||..++...    
T Consensus        42 ~~~l~~~e~~~l~~~F~~~D~d~~G~I-~~~El~~~l~~~g~~~~~~~~~~l~~~~D~d~dg~I~~~EF~~~~~~~----  116 (220)
T 3sjs_A           42 LNTIPLDQYTRIYQWFMGVDRDRSGTL-EINELMMGQFPGGIRLSPQTALRMMRIFDTDFNGHISFYEFMAMYKFM----  116 (220)
T ss_dssp             GGGCCHHHHHHHHHHHHHHCTTCCSSB-CHHHHHHCCBGGGBCCCHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHH----
T ss_pred             HhcCCHHHHHHHHHHHHHhCCCCCCcC-cHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHH----
Confidence            4457788999999999999986  889 89999999999998888888887774    689999999999999864    


Q ss_pred             CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHH
Q psy2947         331 DIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVD  410 (441)
Q Consensus       331 ~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~  410 (441)
                         +.++.+|+.+|.|++|.|+.+||.+++... +.....++++.+|+.+| |++|.|+++||.+++..+      ..+.
T Consensus       117 ---~~l~~~F~~~D~d~~G~I~~~El~~~l~~~-g~~~~~~~~~~l~~~~d-d~dg~I~~~eF~~~~~~l------~~~~  185 (220)
T 3sjs_A          117 ---ELAYNLFVMNARARSGTLEPHEILPALQQL-GFYINQRTSLLLHRLFA-RGMAFCDLNCWIAICAFA------AQTR  185 (220)
T ss_dssp             ---HHHHHHHHHHCCSSTTEECHHHHHHHHHHH-TCCCCHHHHHHHHHHHC---CCSEEHHHHHHHHHHH------HHHH
T ss_pred             ---HHHHHHHHHHCCCCCCCCcHHHHHHHHHHh-CCCCCHHHHHHHHHHhc-CCCCcCcHHHHHHHHHHH------HHHH
Confidence               679999999999999999999999999877 34556788999999999 999999999999999875      3688


Q ss_pred             HHHHHh-CCCCCC------ceeHHHHHHHHhc
Q psy2947         411 QIFREA-NVTMNS------KVRYEDFVKIACA  435 (441)
Q Consensus       411 ~l~~~~-d~d~dg------~i~~~ef~~~l~~  435 (441)
                      .+|+.+ |.+++|      .|+|+||+.++..
T Consensus       186 ~~F~~~~D~~~~G~i~~~~~i~~~ef~~~~~~  217 (220)
T 3sjs_A          186 SAYQMIFMNPYYGPMKPFNPMEFGKFLDVVTS  217 (220)
T ss_dssp             HHHHHHHTSGGGCSCCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHhcccCCCCCcccccceeHHHHHHHHHH
Confidence            999999 999999      8999999988764

>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A

Probab=99.82  E-value=1.7e-19  Score=153.11  Aligned_cols=127  Identities=24%  Similarity=0.424  Sum_probs=101.1

Q ss_pred             hCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcc
Q psy2947         309 EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTV  388 (441)
Q Consensus       309 ~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i  388 (441)
                      +++|.|+.+||..++... +...+...+..+|+.+|.|++|.|+++||..++..........+.+..+|+.+|.+++|.|
T Consensus        40 d~~G~i~~~el~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i  118 (169)
T 3qrx_A           40 DGSGTIDAKELKVAMRAL-GFEPKKEEIKKMISEIDKDGSGTIDFEEFLTMMTAKMGERDSREEILKAFRLFDDDNSGTI  118 (169)
T ss_dssp             TCCSEECHHHHHHHHHHT-SCCCCHHHHHHHHHHHCSSSSSSEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSSB
T ss_pred             CCCCcCcHHHHHHHHHHc-CCCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHhcccCcHHHHHHHHHHhCCCCCCcC
Confidence            344444444444444333 2234566778888889999999999999999887643322234678899999999999999


Q ss_pred             cHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhcc
Q psy2947         389 PAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAP  436 (441)
Q Consensus       389 s~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~~  436 (441)
                      +.+||+.++..+|..+++++++.+|+.+|.|++|.|+|+||+.++.+.
T Consensus       119 ~~~el~~~l~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~~  166 (169)
T 3qrx_A          119 TIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDEDEFIRIMKKT  166 (169)
T ss_dssp             CHHHHHHHHHHTTCCCCHHHHHHHHHHHCCSSSSCBCHHHHHHHHC--
T ss_pred             CHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCCEeHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999998754

>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A

Probab=99.82  E-value=2e-19  Score=150.92  Aligned_cols=143  Identities=19%  Similarity=0.371  Sum_probs=117.3

Q ss_pred             ecccchHHHHHhhhccc-cC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCHHHH
Q psy2947         260 TFKTPYLEFRECFFLFA-RN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEV  336 (441)
Q Consensus       260 l~~~~~~~l~~~f~~~d-~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~  336 (441)
                      +++.++..++++|..+| .+  |.| +.+++..+++.++..                                 .+...+
T Consensus         7 l~~~~~~~l~~~F~~~D~~~~~G~i-~~~e~~~~l~~~~~~---------------------------------~~~~~~   52 (158)
T 2jnf_A            7 LSSNQVKLLETAFRDFETPEGSGRV-STDQIGIILEVLGIQ---------------------------------QTKSTI   52 (158)
T ss_dssp             SCHHHHHHHHHHHHHSBCSSSCSSE-EHHHHHHHHHHTTCS---------------------------------CSHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCCCCcC-cHHHHHHHHHHhCCC---------------------------------CCHHHH
Confidence            44566677777777777 54  666 667776666665533                                 345567


Q ss_pred             HHHHHhhcCCCCCcccHHHHHHHHHhhccCC----CChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHH
Q psy2947         337 VDAFKAADTTKSGKLSFPDFLKVMHTHSKAE----DIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQI  412 (441)
Q Consensus       337 ~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~----~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l  412 (441)
                      ..+|+.+|.+++|.|+++||..++.......    ...+.++.+|+.+|++++|.|+.+||+.++..+|.++++++++.+
T Consensus        53 ~~l~~~~D~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~  132 (158)
T 2jnf_A           53 RQLIDEFDPFGNGDIDFDSFKIIGARFLGEEVNPEQMQQELREAFRLYDKEGNGYISTDVMREILAELDETLSSEDLDAM  132 (158)
T ss_dssp             HHHHHHHCTTCCSEECHHHHHHHHHHHCCCCCCTTTTSSTHHHHHHHHCSSSSSSEEHHHHHHHHHHHCTTCCHHHHHHH
T ss_pred             HHHHHHhCCCCCCcCcHHHHHHHHHHHhccccchhhHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhCCcCCHHHHHHH
Confidence            7778889999999999999999888765433    445679999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCCCceeHHHHHHHHhcc
Q psy2947         413 FREANVTMNSKVRYEDFVKIACAP  436 (441)
Q Consensus       413 ~~~~d~d~dg~i~~~ef~~~l~~~  436 (441)
                      ++.+|.|++|.|+|+||++++.+.
T Consensus       133 ~~~~D~d~dg~i~~~eF~~~~~~~  156 (158)
T 2jnf_A          133 IDEIDADGSGTVDFEEFMGVMTGG  156 (158)
T ss_dssp             HHHHCSSCCSEECSHHHHHHTSSC
T ss_pred             HHHhCCCCCCcEeHHHHHHHHhcc
Confidence            999999999999999999998764

>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A

Probab=99.81  E-value=3.1e-19  Score=147.70  Aligned_cols=126  Identities=28%  Similarity=0.471  Sum_probs=103.9

Q ss_pred             HhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCc
Q psy2947         308 AEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGT  387 (441)
Q Consensus       308 ~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~  387 (441)
                      .+++|.|+.+||..++... ....+...+..+|+.+|.+++|.|+++||..++..........+.+..+|+.+|.+++|.
T Consensus        22 ~~~~G~i~~~e~~~~l~~~-~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~  100 (147)
T 4ds7_A           22 KDNSGSISASELATVMRSL-GLSPSEAEVADLMNEIDVDGNHAIEFSEFLALMSRQLKCNDSEQELLEAFKVFDKNGDGL  100 (147)
T ss_dssp             TTCSSEEEHHHHHHHHHHT-TCCCCHHHHHHHHHHHCTTSSSEEEHHHHHHHHHHHHHTHHHHHHHHHHHHHHCTTCSSE
T ss_pred             CCCCCCcCHHHHHHHHHHh-CCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHhccCCCcHHHHHHHHHHhCCCCCCe
Confidence            3455555555555555443 223566778888899999999999999999988765443344578899999999999999


Q ss_pred             ccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         388 VPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       388 is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      |+.+||++++..+|.++++++++.+++.+| |++|.|+|+||++++.+
T Consensus       101 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d-~~dg~i~~~eF~~~l~k  147 (147)
T 4ds7_A          101 ISAAELKHVLTSIGEKLTDAEVDEMLREVS-DGSGEINIKQFAALLSK  147 (147)
T ss_dssp             ECHHHHHHHHHHTTCCCCHHHHHHHHHHHS-SSCSSEEHHHHHHHTTC
T ss_pred             ECHHHHHHHHHHcCCCCCHHHHHHHHHHhc-CCCCcCcHHHHHHHHhC
Confidence            999999999999999999999999999999 99999999999998864

>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A

Probab=99.81  E-value=4.2e-19  Score=147.87  Aligned_cols=127  Identities=23%  Similarity=0.436  Sum_probs=104.8

Q ss_pred             HhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCC----ChHHHHHHHHHhCCC
Q psy2947         308 AEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAED----IPKEVVDAFKAADTT  383 (441)
Q Consensus       308 ~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~----~~~~~~~~f~~~D~~  383 (441)
                      .+++|.|+.+||..++.... ...+...+..+|+.+|.+++|.|+++||..++........    ..+.++.+|+.+|.+
T Consensus        22 ~d~~G~i~~~el~~~l~~~~-~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d  100 (153)
T 3ox6_A           22 KDKDGYINCRDLGNCMRTMG-YMPTEMELIELSQQINMNLGGHVDFDDFVELMGPKLLAETADMIGVKELRDAFREFDTN  100 (153)
T ss_dssp             HHCSSSCCHHHHHHHHHHTT-CCCCHHHHHHHHHHHHTTSTTCCCHHHHHHHHHHHHTTCCHHHHCHHHHHHHHHHHCTT
T ss_pred             CCCCCcCcHHHHHHHHHHcC-CCCCHHHHHHHHHHhCCCCCccCcHHHHHHHHHHHhhccccccccHHHHHHHHHHhCCC
Confidence            45566666666666655442 2356677888888999999999999999998876533322    146789999999999


Q ss_pred             CCCcccHHHHHHHHHH-hCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         384 KSGTVPAKYLKHVLVN-WGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       384 ~~G~is~~ef~~~l~~-~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      ++|.|+.+||++++.. .|.++++++++.+++.+|.|++|.|+|+||+.++.+
T Consensus       101 ~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~~k  153 (153)
T 3ox6_A          101 GDGEISTSELREAMRALLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFVRMMSR  153 (153)
T ss_dssp             CSSSBCHHHHHHHHHHHHSSCCCHHHHHHHHHHHCSSSSSSBCHHHHHHHTCC
T ss_pred             CCCcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHhC
Confidence            9999999999999999 899999999999999999999999999999998864

>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding protein, CBP40, metal binding protein; 3.00A {Physarum polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A

Probab=99.81  E-value=9.9e-20  Score=170.70  Aligned_cols=169  Identities=20%  Similarity=0.254  Sum_probs=141.4

Q ss_pred             ceecccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHH----------------------------
Q psy2947         258 VFTFKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYL----------------------------  307 (441)
Q Consensus       258 ~~l~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~----------------------------  307 (441)
                      ..+++.++..+...|..+|.+  |.| +..++..++..++..++..++..++                            
T Consensus       114 ~~Ls~~e~~~l~~~F~~~D~d~dG~I-s~~El~~~L~~lg~~~~~~~i~~l~~~~D~d~~G~I~f~ef~~l~~~~~~l~~  192 (323)
T 1ij5_A          114 PMLSEEDTNILRQLFLSSAVSGSGKF-SFQDLKQVLAKYADTIPEGPLKKLFVMVENDTKGRMSYITLVAVANDLAALVA  192 (323)
T ss_dssp             CCCCHHHHHHHHHHHTSSSSTTSSCC-CHHHHHHHHHHHHTTSCSSHHHHHHHHHHHCCSSTHHHHHHTTSHHHHHTSCC
T ss_pred             HhCCHHHHHHHHHHHHHHhCCCCCCC-cHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcCcHHHHHhhhhHHHHHHH
Confidence            456788899999999999976  889 8999999999887666544443332                            


Q ss_pred             ------HhCCCcccHHHHHHHHHhhcCCCCCHHHHHH-HHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHh
Q psy2947         308 ------AEKGGKLSFPDFLKVMHTHSKAEDIPKEVVD-AFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAA  380 (441)
Q Consensus       308 ------~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~-~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~  380 (441)
                            .+++|.|+.+||..++   .+...+...+.. +|+.+|.|++|.|+++||..++....       .+..+|+.+
T Consensus       193 ~F~~~D~d~dG~Is~~El~~~l---~g~~~~~~ei~~~l~~~~D~d~dG~Is~~EF~~~l~~~~-------~l~~~F~~~  262 (323)
T 1ij5_A          193 DFRKIDTNSNGTLSRKEFREHF---VRLGFDKKSVQDALFRYADEDESDDVGFSEYVHLGLCLL-------VLRILYAFA  262 (323)
T ss_dssp             CHHHHCTTCCSEECHHHHHHHH---HHTTCCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHH-------HHHHHHHHT
T ss_pred             HHHHHCCCCCCcCcHHHHHHHH---cCCCCCHHHHHHHHHHHhcCCCCCEEeHHHHHHHHHHHH-------HHHHHHHHh
Confidence                  2466777777777777   223455677888 99999999999999999999887662       788999999


Q ss_pred             CCCCCCcccHHHHHHHH-HHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhccC
Q psy2947         381 DTTKSGTVPAKYLKHVL-VNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAPV  437 (441)
Q Consensus       381 D~~~~G~is~~ef~~~l-~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~~~  437 (441)
                      |.|++|+|+.+||+.++ ..+|..++++++..+|..+|.|+||.|+|+||+.+|..-+
T Consensus       263 D~d~dG~Is~~El~~~l~~~~g~~ls~~e~~~l~~~~D~d~dG~Is~~EF~~~~~~~~  320 (323)
T 1ij5_A          263 DFDKSGQLSKEEVQKVLEDAHIPESARKKFEHQFSVVDVDDSKSLSYQEFVMLVLLMF  320 (323)
T ss_dssp             CSSSCSSEEHHHHHHHHHHTTCCGGGCSTHHHHHHHHTTTTCSEECHHHHHHHHHHHC
T ss_pred             CCCCCCCccHHHHHHHHHHHcCCCCCHHHHHHHHHHHCCCCCCcEeHHHHHHHHHHhc
Confidence            99999999999999999 8899889999999999999999999999999999987543

>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding protein; HET: MYR; NMR {Schizosaccharomyces pombe}

Probab=99.81  E-value=1.8e-18  Score=149.93  Aligned_cols=154  Identities=19%  Similarity=0.326  Sum_probs=127.4

Q ss_pred             CCccCHHHHHHHHHHcCCCcCHHHHHHH----HHh-CCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccH
Q psy2947         279 GTIKTLDELSVIMRSLGMSPTIAELKKY----LAE-KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSF  353 (441)
Q Consensus       279 G~i~~~~el~~~~~~~~~~~~~~~~~~~----~~~-~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~  353 (441)
                      |.+ +.+++..+.+..+.  +..++..+    +.+ ++|.|+++||..++........+.+.+..+|+.+|.|++|.|++
T Consensus         6 ~~l-~~~el~~~~~~~~~--~~~el~~~f~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~G~i~~   82 (190)
T 2l2e_A            6 SKL-SQDQLQDLVRSTRF--DKKELQQWYKGFFKDCPSGHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKNGYIDF   82 (190)
T ss_dssp             CCS-CHHHHHHHHHHHCS--CSHHHHHHHHHHHHHSCCCEECHHHHHHHHHHHCCCSCHHHHHHHHHHHHCSSSTTCEEH
T ss_pred             ccC-CHHHHHHHHHhcCC--CHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHhCCCCCccHHHHHHHHHhcCCCCCeEeH
Confidence            556 67777777776543  34444443    357 79999999999999987655566788999999999999999999


Q ss_pred             HHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh------------CCCCCHHHHHHHHHHhCCCCC
Q psy2947         354 PDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW------------GEGLSSKEVDQIFREANVTMN  421 (441)
Q Consensus       354 ~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~------------~~~l~~~~~~~l~~~~d~d~d  421 (441)
                      +||..++.... .....+.++.+|+.+|.|++|.|+++||+.++...            +...++++++.+|+.+|.|++
T Consensus        83 ~ef~~~~~~~~-~~~~~~~~~~~f~~~D~d~~G~i~~~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~d  161 (190)
T 2l2e_A           83 KEFICALSVTS-RGELNDKLIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKD  161 (190)
T ss_dssp             HHHHHHHTTSS-CSCSHHHHHHHHHHHCTTSCSCBCHHHHHHHHHHHHHHHHHHSCCCSSCCCTHHHHHHHHHHHTCCSS
T ss_pred             HHHHHHHHHHc-CCCHHHHHHHHHhHccCCCCCcCcHHHHHHHHHHHHHHhccccCcccccccHHHHHHHHHHHhCCCCC
Confidence            99999998763 34457889999999999999999999999999872            235788999999999999999


Q ss_pred             CceeHHHHHHHHhcc
Q psy2947         422 SKVRYEDFVKIACAP  436 (441)
Q Consensus       422 g~i~~~ef~~~l~~~  436 (441)
                      |.|+|+||+.++.+.
T Consensus       162 G~I~~~Ef~~~~~~~  176 (190)
T 2l2e_A          162 GQLTLEEFCEGSKRD  176 (190)
T ss_dssp             CCBCHHHHHHHHHTC
T ss_pred             CcCcHHHHHHHHHhC
Confidence            999999999998653

>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5

Probab=99.81  E-value=6.9e-19  Score=150.34  Aligned_cols=152  Identities=14%  Similarity=0.173  Sum_probs=125.2

Q ss_pred             cccchHHHHHhhhccccC--CCccCHHHHHH----HHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCHH
Q psy2947         261 FKTPYLEFRECFFLFARN--GTIKTLDELSV----IMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPK  334 (441)
Q Consensus       261 ~~~~~~~l~~~f~~~d~~--G~i~~~~el~~----~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~  334 (441)
                      ++.++.+++++|..+|.+  |.| +.+|+..    +++.++..++..++..+...             +         ..
T Consensus         2 s~~~~~~l~~~F~~~D~d~~G~i-~~~el~~~~~~~l~~~g~~~~~~~~~~l~~~-------------~---------~~   58 (176)
T 1nya_A            2 TAIASDRLKKRFDRWDFDGNGAL-ERADFEKEAQHIAEAFGKDAGAAEVQTLKNA-------------F---------GG   58 (176)
T ss_dssp             CSHHHHHHHHHHHHCCSSCCSSB-CSHHHHHHHHHHHHHTSSCSSSHHHHHHHHH-------------H---------HH
T ss_pred             cHHHHHHHHHHHHHHcCCCCCcc-cHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH-------------H---------HH
Confidence            456788899999999875  788 7889988    67777766666665544421             1         13


Q ss_pred             HHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCC-------hHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHH
Q psy2947         335 EVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDI-------PKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSK  407 (441)
Q Consensus       335 ~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~-------~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~  407 (441)
                      .+..+|+.+|.|++|.|+++||..++.........       .+.++.+|+.+|.+++|.|+.+||+.++..+|  ++++
T Consensus        59 ~~~~lf~~~D~d~dg~i~~~Ef~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g--~~~~  136 (176)
T 1nya_A           59 LFDYLAKEAGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADEFAAWLTALG--MSKA  136 (176)
T ss_dssp             HHHHHHHHHTSCTTCCBCHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTCSSCCSEEEHHHHHHHHHHTT--CCHH
T ss_pred             HHHHHHHHhCCCCCCeEcHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHhC--CCHH
Confidence            46688999999999999999999998876444332       35688999999999999999999999999998  8999


Q ss_pred             HHHHHHHHhCCCCCCceeHHHHHHHHhccC
Q psy2947         408 EVDQIFREANVTMNSKVRYEDFVKIACAPV  437 (441)
Q Consensus       408 ~~~~l~~~~d~d~dg~i~~~ef~~~l~~~~  437 (441)
                      +++.+|+.+|.|++|.|+|+||++++.+.+
T Consensus       137 ~~~~~~~~~D~d~dg~i~~~ef~~~~~~~~  166 (176)
T 1nya_A          137 EAAEAFNQVDTNGNGELSLDELLTAVRDFH  166 (176)
T ss_dssp             HHHHHHHHHCTTCSSEEEHHHHHHHHSCCS
T ss_pred             HHHHHHHHhCCCCCCCCcHHHHHHHHHHHh
Confidence            999999999999999999999999997654

>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A 2fce_A

Probab=99.81  E-value=1.8e-19  Score=149.49  Aligned_cols=130  Identities=18%  Similarity=0.315  Sum_probs=107.7

Q ss_pred             HHHhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhh-cCCCCCcccHHHHHHHHHhh--c---cCCCChHHHHHHHHH
Q psy2947         306 YLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAA-DTTKSGKLSFPDFLKVMHTH--S---KAEDIPKEVVDAFKA  379 (441)
Q Consensus       306 ~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~-D~d~~g~i~~~ef~~~~~~~--~---~~~~~~~~~~~~f~~  379 (441)
                      ++.+++|.|+.+||..++... +...+...+..+|+.+ |.+++|.|+++||..++...  .   ......+.++.+|+.
T Consensus        13 ~D~d~~G~i~~~el~~~l~~~-g~~~~~~~~~~l~~~~~D~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~F~~   91 (148)
T 1m45_A           13 FDKKGQGAIAKDSLGDYLRAI-GYNPTNQLVQDIINADSSLRDASSLTLDQITGLIEVNEKELDATTKAKTEDFVKAFQV   91 (148)
T ss_dssp             HCTTCCSEEEGGGHHHHHHHT-TCCCCHHHHHHHHHC--CC--CCEEEHHHHHHHHHHTHHHHHGGGCCCTHHHHHHHHT
T ss_pred             HCCCCCCCCCHHHHHHHHHHh-CCCCCHHHHHHHHHHhhCCCCCCeEcHHHHHHHHHHHHhhccccccccHHHHHHHHHH
Confidence            335667777777777777655 3345677888889999 99999999999999988776  2   334446789999999


Q ss_pred             hCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhcc
Q psy2947         380 ADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAP  436 (441)
Q Consensus       380 ~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~~  436 (441)
                      +|++++|.|+.+||+.++..+|.++++++++.+++.+|.|++|.|+|+||+.+|.++
T Consensus        92 ~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~d~dg~i~~~eF~~~~~~k  148 (148)
T 1m45_A           92 FDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDYKKFIEDVLRQ  148 (148)
T ss_dssp             TCSSSSSEEEHHHHHHHHHHSTTCCCHHHHHHHHTTCCCCTTSEEEHHHHHHHHHCC
T ss_pred             hCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999998753

>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A

Probab=99.80  E-value=4.1e-19  Score=152.33  Aligned_cols=143  Identities=37%  Similarity=0.643  Sum_probs=109.3

Q ss_pred             ecccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCHHHHH
Q psy2947         260 TFKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVV  337 (441)
Q Consensus       260 l~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~  337 (441)
                      +++.++..+++.|..+|.+  |.| +..|+..+++.++.                                 ..+...+.
T Consensus         5 l~~~~~~~l~~~F~~~D~d~~G~i-~~~e~~~~l~~~~~---------------------------------~~~~~~~~   50 (179)
T 2f2o_A            5 LTEEQIAEFKEAFSLFDKDGDGTI-TTKELGTVMRSLGQ---------------------------------NPTEAELQ   50 (179)
T ss_dssp             -CCSHHHHHHHHHHHHCTTCSSCB-CHHHHHHHHHHTTC---------------------------------CCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCcC-cHHHHHHHHHHcCC---------------------------------CCCHHHHH
Confidence            4455566666666666654  455 55555555555442                                 24456677


Q ss_pred             HHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Q psy2947         338 DAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREAN  417 (441)
Q Consensus       338 ~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d  417 (441)
                      .+|+.+|.|++|.|+++||..++..........+.++.+|+.+|.+++|.|+.+||++++..+|..+++++++.+|+.+|
T Consensus        51 ~l~~~~D~~~~g~i~~~EF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~g~~~~~~~~~~~~~~~D  130 (179)
T 2f2o_A           51 DMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREAD  130 (179)
T ss_dssp             HHHHHHCTTCSSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHC--CCCHHHHHHHHHHHC
T ss_pred             HHHHHhccCCCCCCcHHHHHHHHHHHccCcccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHcC
Confidence            78888999999999999999888654322223467889999999999999999999999999999999999999999999


Q ss_pred             CCCCCceeHHHHHHHHhcc
Q psy2947         418 VTMNSKVRYEDFVKIACAP  436 (441)
Q Consensus       418 ~d~dg~i~~~ef~~~l~~~  436 (441)
                      .|++|.|+|+||+.++...
T Consensus       131 ~~~dg~i~~~eF~~~~~~~  149 (179)
T 2f2o_A          131 IDGDGQVNYEEFVQMMTAK  149 (179)
T ss_dssp             TTCSSSEEHHHHHHHSCC-
T ss_pred             CCCCCcCcHHHHHHHHHHc
Confidence            9999999999999998653

>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium binding, EF-hand superfamily, S genomics, protein structure initiative, PSI; 2.10A {Danio rerio} PDB: 2q4u_A

Probab=99.80  E-value=5.8e-19  Score=161.98  Aligned_cols=176  Identities=16%  Similarity=0.241  Sum_probs=131.5

Q ss_pred             eecccchHHHHHhhhccccC--CCccCHHHHHHHHH----HcCC--CcCHHHHHH--------HHHhCCCcccHHHHHHH
Q psy2947         259 FTFKTPYLEFRECFFLFARN--GTIKTLDELSVIMR----SLGM--SPTIAELKK--------YLAEKGGKLSFPDFLKV  322 (441)
Q Consensus       259 ~l~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~----~~~~--~~~~~~~~~--------~~~~~~g~i~~~ef~~~  322 (441)
                      .++..+..+++++|..+|.+  |.| +..|+..+++    .++.  .++..++..        ++.+++|.|+++||..+
T Consensus         4 ~~~~~~~~~l~~~F~~~D~d~~G~i-~~~El~~~l~~~~~~lg~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~Ef~~~   82 (272)
T 2be4_A            4 AFANLDAAGFLQIWQHFDADDNGYI-EGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSAYDATFDGRLQIEELANM   82 (272)
T ss_dssp             CCCCCCHHHHHHHHHHHCTTCCSEE-EGGGHHHHHHHHHHHHSTTSCCCHHHHHHHHHHHSCHHHHTCCSEEEHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHhcCCCCCCc-CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEeHHHHHHH
Confidence            34566778888999888875  778 7888988888    7777  777776654        33478889999999888


Q ss_pred             H-----------HhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhc----c----------------------
Q psy2947         323 M-----------HTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHS----K----------------------  365 (441)
Q Consensus       323 ~-----------~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~----~----------------------  365 (441)
                      +           ... ......+.++.+|+.+|.|++|.|+.+||..++....    .                      
T Consensus        83 ~~~~~~~~~~~~~~~-~~~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~D~~~  161 (272)
T 2be4_A           83 ILPQEENFLLIFRRE-APLDNSVEFMKIWRKYDADSSGYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNK  161 (272)
T ss_dssp             HSCHHHHHHHHHHHH-SCCCCHHHHHHHHHHHCTTCCSEEEGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHCSSC
T ss_pred             HhhhhHHHHHHHhhc-cCcccHHHHHHHHHHhCCCCCCccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCC
Confidence            3           222 2234566677777777777777777777766554220    0                      


Q ss_pred             -------------CC----------------CChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCC----CCCHHHHHH-
Q psy2947         366 -------------AE----------------DIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGE----GLSSKEVDQ-  411 (441)
Q Consensus       366 -------------~~----------------~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~----~l~~~~~~~-  411 (441)
                                   ..                ...+.++.+|+.+|.|++|.|+.+||+++++.++.    .+++++++. 
T Consensus       162 dg~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~E~~~~l~~~~~~~~~~~~~~~~~~~  241 (272)
T 2be4_A          162 DGRLDLNDLARILALQENFLLQFKMDASSQVERKRDFEKIFAHYDVSRTGALEGPEVDGFVKDMMELVRPSISGGDLDKF  241 (272)
T ss_dssp             SSEEEHHHHGGGSCCSSCSSTTSCCCHHHHHHHHHHHHHHHHHHCTTCCSEEETHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred             CCcCcHHHHHHHHhhhHHHHhhhhhhhccccccHHHHHHHHHHhCCCCCCeecHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence                         00                11245778899999999999999999999988765    789988877 


Q ss_pred             ---HHHHhCCCCCCceeHHHHHHHHhcc
Q psy2947         412 ---IFREANVTMNSKVRYEDFVKIACAP  436 (441)
Q Consensus       412 ---l~~~~d~d~dg~i~~~ef~~~l~~~  436 (441)
                         +|+.+|.|+||.|+|+||+.+|...
T Consensus       242 ~~~l~~~~D~d~dG~is~~EF~~~~~~~  269 (272)
T 2be4_A          242 RECLLTHCDMNKDGKIQKSELALCLGLK  269 (272)
T ss_dssp             HHHHHHHHCCSTTCEEEHHHHHHHTTCC
T ss_pred             HHHHHHHhCCCCCCcCcHHHHHHHHccC
Confidence               9999999999999999999998754

>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...

Probab=99.80  E-value=4.9e-19  Score=148.98  Aligned_cols=124  Identities=22%  Similarity=0.436  Sum_probs=98.7

Q ss_pred             CCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhcc---CCCChHHHHHHHHHhCCCCCCc
Q psy2947         311 GGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSK---AEDIPKEVVDAFKAADTTKSGT  387 (441)
Q Consensus       311 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~---~~~~~~~~~~~f~~~D~~~~G~  387 (441)
                      +|.|+.+||..++... +...+...+..+|+.+|.|++|.|+++||..++.....   .....+.++.+|+.+|.|++|.
T Consensus        33 ~G~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~D~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~  111 (161)
T 1dtl_A           33 DGSISTKELGKVMRML-GQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGY  111 (161)
T ss_dssp             GGSBCHHHHHHHHHHT-TCCCCHHHHHHHHHHHCTTSSSSBCHHHHHHHHHHHHC-----CHHHHHHHHHHHHCTTCSSE
T ss_pred             CCcCcHHHHHHHHHHc-CCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHHhcccccchHHHHHHHHHHHhCCCCCCc
Confidence            4444444444444433 12345667778888999999999999999998887643   3344678999999999999999


Q ss_pred             ccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         388 VPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       388 is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      |+.+||+.++..+|.++++++++.+|+.+|.|++|.|+|+||+.++.+
T Consensus       112 i~~~El~~~l~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~~  159 (161)
T 1dtl_A          112 IDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMKG  159 (161)
T ss_dssp             EEHHHHGGGGTTC--CCCHHHHHHHHHHHCTTSSSEEEHHHHHHHHHC
T ss_pred             CcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHc
Confidence            999999999999999999999999999999999999999999999864

>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...

Probab=99.80  E-value=4.5e-19  Score=148.48  Aligned_cols=126  Identities=25%  Similarity=0.368  Sum_probs=104.0

Q ss_pred             hCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccC-CCChHHHHHHHHHhCCCCCCc
Q psy2947         309 EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKA-EDIPKEVVDAFKAADTTKSGT  387 (441)
Q Consensus       309 ~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~-~~~~~~~~~~f~~~D~~~~G~  387 (441)
                      +++|.|+.+||..++.... ...+...+..+ +.+|.+++|.|+++||..++...... ....+.++.+|+.+|.+++|.
T Consensus        23 d~~G~i~~~el~~~l~~~g-~~~~~~~~~~l-~~~D~~~~g~i~~~eF~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~  100 (156)
T 1wdc_C           23 GRDGAVDAFKLGDVCRCLG-INPRNEDVFAV-GGTHKMGEKSLPFEEFLPAYEGLMDCEQGTFADYMEAFKTFDREGQGF  100 (156)
T ss_dssp             CSSSCEEGGGHHHHHHHTT-CCCCHHHHHHT-TCCSSTTSCEECHHHHHHHHHHHTTSCCCCHHHHHHHHHTTCSSSSSE
T ss_pred             CCCCCCcHHHHHHHHHHcC-CCCCHHHHHHH-HhhCCCCCCeeeHHHHHHHHHHHhhccCChHHHHHHHHHHhCCCCCCc
Confidence            4555555555555555432 23445666677 77999999999999999988877543 455688999999999999999


Q ss_pred             ccHHHHHHHHHHhCCCCCHHHHHHHHHH--hCCCCCCceeHHHHHHHHhcc
Q psy2947         388 VPAKYLKHVLVNWGEGLSSKEVDQIFRE--ANVTMNSKVRYEDFVKIACAP  436 (441)
Q Consensus       388 is~~ef~~~l~~~~~~l~~~~~~~l~~~--~d~d~dg~i~~~ef~~~l~~~  436 (441)
                      |+.+||+.++..+|..+++++++.+++.  +|.|++|.|+|+||+.++.+.
T Consensus       101 I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~~~  151 (156)
T 1wdc_C          101 ISGAELRHVLTALGERLSDEDVDEIIKLTDLQEDLEGNVKYEDFVKKVMAG  151 (156)
T ss_dssp             EEHHHHHHHHHHSSSCCCHHHHHHHHHHHTCCCCTTSEEEHHHHHHHHHHC
T ss_pred             CcHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCCCcEeHHHHHHHHhcC
Confidence            9999999999999999999999999999  999999999999999999754

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.80  E-value=1.2e-20  Score=198.19  Aligned_cols=136  Identities=14%  Similarity=0.100  Sum_probs=98.0

Q ss_pred             cCcccCCCCCCCEEEccCCCCCc------------------CCcCcc--CCCCCcEEEccCCcCCCCCCchhhhcCCCCC
Q psy2947          73 IGRRIFKCDTVEVLSLKSNSLTS------------------LPPDIG--RLTNLRVLCLTDNCLQNASIPFTLTFCKNLT  132 (441)
Q Consensus        73 i~~~~~~l~~L~~L~l~~n~l~~------------------lp~~~~--~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~  132 (441)
                      ||..+.++++|++|+|++|+++.                  +|..++  .+++|+.|+|++|.+. +.+|..++++++|+
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~-~~iP~~l~~L~~L~  518 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM-TQLPDFLYDLPELQ  518 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTC-CSCCGGGGGCSSCC
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCC-ccChHHHhCCCCCC
Confidence            67778888999999999999987                  888877  8999999999999887 78898889999999


Q ss_pred             EEEccCCC-CC--ccchhhcCCC-------CCCEEEccCCcCccCcccccccccccc--cccccchhHHH-HhhcccccC
Q psy2947         133 HLYLDNNL-LD--ALPGFLLSMP-------QLDTVYRHGNHNYFKSTFMWYHSDIHA--RIRSTSTRDEV-LRKQKKLHQ  199 (441)
Q Consensus       133 ~L~l~~n~-l~--~lp~~~~~l~-------~L~~L~l~~N~~~~~~~~~~~~~~~p~--~l~~l~~~~~~-l~~~~~~~~  199 (441)
                      +|+|++|+ ++  .+|..++.++       +|+.|++++|.+..          +|.  .+..++.+..+ +.+|.+..+
T Consensus       519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~----------ip~~~~l~~L~~L~~L~Ls~N~l~~l  588 (876)
T 4ecn_A          519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE----------FPASASLQKMVKLGLLDCVHNKVRHL  588 (876)
T ss_dssp             EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB----------CCCHHHHTTCTTCCEEECTTSCCCBC
T ss_pred             EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCc----------cCChhhhhcCCCCCEEECCCCCcccc
Confidence            99999997 76  4776555444       88888888888642          344  44444444444 444444444


Q ss_pred             CchhhhhhhhcccccccccCC
Q psy2947         200 PSRLQDLAVQSVIASKENFFE  220 (441)
Q Consensus       200 p~~l~~l~~l~~l~l~~n~~~  220 (441)
                      | .+..+++|+.|++++|.+.
T Consensus       589 p-~~~~L~~L~~L~Ls~N~l~  608 (876)
T 4ecn_A          589 E-AFGTNVKLTDLKLDYNQIE  608 (876)
T ss_dssp             C-CCCTTSEESEEECCSSCCS
T ss_pred             h-hhcCCCcceEEECcCCccc
Confidence            4 4455555555555555443

>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S 3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A

Probab=99.80  E-value=1.3e-18  Score=148.50  Aligned_cols=152  Identities=15%  Similarity=0.194  Sum_probs=131.4

Q ss_pred             chHHHHHhhhccccC--CCccCHHHHHHHHHHc-C-------CCcCHHHHHHHHH----hCCCcccHHHHHHHHHhhcCC
Q psy2947         264 PYLEFRECFFLFARN--GTIKTLDELSVIMRSL-G-------MSPTIAELKKYLA----EKGGKLSFPDFLKVMHTHSKA  329 (441)
Q Consensus       264 ~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~-~-------~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~~~  329 (441)
                      ++.+++++|..+| +  |.| +.+|++.+++.+ +       ..++..++..++.    +++|.|+++||..++...   
T Consensus         2 ~~~~l~~~F~~~D-d~~G~i-~~~el~~~l~~~~g~~~~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~eF~~~~~~~---   76 (173)
T 1alv_A            2 EVRQFRRLFAQLA-GDDMEV-SATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNI---   76 (173)
T ss_dssp             HHHHHHHHHHHHH-GGGTSB-CHHHHHHHHHHHHHTCSTTCCSCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHH---
T ss_pred             chhHHHHHHHHHh-CCCCCc-CHHHHHHHHHHhhhcccccccCCCCHHHHHHHHHHHcCCCCCccCHHHHHHHHHHH---
Confidence            5678999999998 6  889 899999999987 5       5677777777664    689999999999998853   


Q ss_pred             CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHH
Q psy2947         330 EDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEV  409 (441)
Q Consensus       330 ~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~  409 (441)
                          ..++.+|+.+|.|++|.|+.+||..++... +.....+.++.+|+.+| +++|.|+++||..++...      +.+
T Consensus        77 ----~~~~~~F~~~D~d~~G~i~~~el~~~l~~~-g~~~~~~~~~~~~~~~d-d~dg~i~~~eF~~~~~~~------~~~  144 (173)
T 1alv_A           77 ----KKWQAIYKQFDVDRSGTIGSSELPGAFEAA-GFHLNEHLYSMIIRRYS-DEGGNMDFDNFISCLVRL------DAM  144 (173)
T ss_dssp             ----HHHHHHHHHHCTTCCSSBCTTTHHHHHHHH-TCCCCHHHHHHHHHHHT-CSSSCBCHHHHHHHHHHH------HHH
T ss_pred             ----HHHHHHHHHHCCCCCCCCCHHHHHHHHHHc-CCCCCHHHHHHHHHHhc-CCCCcCcHHHHHHHHHHH------HHH
Confidence                679999999999999999999999999877 44556789999999999 999999999999999764      678


Q ss_pred             HHHHHHhCCCCCCceeHHHHHHHH
Q psy2947         410 DQIFREANVTMNSKVRYEDFVKIA  433 (441)
Q Consensus       410 ~~l~~~~d~d~dg~i~~~ef~~~l  433 (441)
                      ..+|+.+|.|++|.|+.+ |.+++
T Consensus       145 ~~~F~~~D~d~~G~i~~~-~~~~l  167 (173)
T 1alv_A          145 FRAFKSLDKDGTGQIQVN-IQEWL  167 (173)
T ss_dssp             HHHHHHHSSSCCSEEEEE-HHHHH
T ss_pred             HHHHHHhCCCCCCeecHh-HHHHH
Confidence            899999999999999866 55554

>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*

Probab=99.80  E-value=1.8e-18  Score=143.46  Aligned_cols=124  Identities=20%  Similarity=0.379  Sum_probs=99.1

Q ss_pred             hCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhh---cCCCCCcccHHHHHHHHHhh--ccCCCChHHHHHHHHHhCCC
Q psy2947         309 EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAA---DTTKSGKLSFPDFLKVMHTH--SKAEDIPKEVVDAFKAADTT  383 (441)
Q Consensus       309 ~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~---D~d~~g~i~~~ef~~~~~~~--~~~~~~~~~~~~~f~~~D~~  383 (441)
                      +++|.|+.+||..++... ....+.+.+..+|+.+   |.++ |.|+++||..++...  .......+.++.+|+.+|.+
T Consensus        20 ~~~G~i~~~el~~~l~~~-~~~~~~~~~~~l~~~~~~~d~~~-g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~F~~~D~d   97 (149)
T 2mys_C           20 TGDAKITASQVGDIARAL-GQNPTNAEINKILGNPSKEEMNA-AAITFEEFLPMLQAAANNKDQGTFEDFVEGLRVFDKE   97 (149)
T ss_pred             CCCCcCcHHHHHHHHHHh-CCCCCHHHHHHHHHHhhhccccC-CcCcHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCC
Confidence            344444444444444333 1223456677777778   9999 999999999988775  33444467899999999999


Q ss_pred             CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         384 KSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       384 ~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      ++|.|+.+||+.++..+|..+++++++.+++. |.|++|.|+|+||+.+|.+
T Consensus        98 ~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~-d~~~dg~i~~~eF~~~~~~  148 (149)
T 2mys_C           98 GNGTVMGAELRHVLATLGEKMTEEEVEELMKG-QEDSNGCINYEAFVKHIMS  148 (149)
T ss_pred             CCceEcHHHHHHHHHHhCCCCCHHHHHHHHhh-CCCCCCcEeHHHHHHHHhc
Confidence            99999999999999999999999999999999 9999999999999999865

>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=99.79  E-value=9.7e-19  Score=144.36  Aligned_cols=127  Identities=24%  Similarity=0.437  Sum_probs=100.5

Q ss_pred             HhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhc-cCCCChHHHHHHHHHhCCCCCC
Q psy2947         308 AEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHS-KAEDIPKEVVDAFKAADTTKSG  386 (441)
Q Consensus       308 ~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~-~~~~~~~~~~~~f~~~D~~~~G  386 (441)
                      .+++|.|+.+||..++... ....+.+.+..+|+.   +++|.|+++||..++.... ......+.++.+|+.+|.+++|
T Consensus        16 ~d~~G~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~---~~~g~i~~~eF~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G   91 (145)
T 2bl0_B           16 KDNDGKVSIEELGSALRSL-GKNPTNAELNTIKGQ---LNAKEFDLATFKTVYRKPIKTPTEQSKEMLDAFRALDKEGNG   91 (145)
T ss_dssp             TTCSSCEEGGGHHHHHHHT-TCCCCHHHHHHHHHH---HTSSEECHHHHHHHHTSCCCCGGGGHHHHHHHHHHHCSSSSS
T ss_pred             CCCcCccCHHHHHHHHHHh-CCCCCHHHHHHHHHh---cCCCeEcHHHHHHHHHHHhhcCcccHHHHHHHHHHhCCCCCC
Confidence            4556666666666666554 223455566666665   6778888888888776543 2333457889999999999999


Q ss_pred             cccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhccCC
Q psy2947         387 TVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAPVP  438 (441)
Q Consensus       387 ~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~~~~  438 (441)
                      .|+.+||+.++..+|.++++++++.+++.+|.|++|.|+|+||+.++.+.++
T Consensus        92 ~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~~~~~~  143 (145)
T 2bl0_B           92 TIQEAELRQLLLNLGDALTSSEVEELMKEVSVSGDGAINYESFVDMLVTGYP  143 (145)
T ss_dssp             EEEHHHHHHHHHHSSSCCCHHHHHHHHTTCCCCTTSEEEHHHHHHHHHHSSC
T ss_pred             eEcHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCCCCcEeHHHHHHHHHhcCC
Confidence            9999999999999999999999999999999999999999999999987765

>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}

Probab=99.79  E-value=2e-18  Score=146.89  Aligned_cols=143  Identities=15%  Similarity=0.179  Sum_probs=121.7

Q ss_pred             ccCCCccCHHHHHHHHHHc------CCCcCHHHHHHHHH----hCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcC
Q psy2947         276 ARNGTIKTLDELSVIMRSL------GMSPTIAELKKYLA----EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADT  345 (441)
Q Consensus       276 d~~G~i~~~~el~~~~~~~------~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~  345 (441)
                      |.+|.| +.+|++.+++.+      +..++..++..++.    +++|.|+++||..++...       .+++.+|+.|| 
T Consensus        16 ~~dG~I-~~~EL~~~l~~l~~~~~~g~~~~~~~~~~l~~~~D~d~~G~I~f~EF~~~~~~~-------~~l~~aF~~fD-   86 (174)
T 2i7a_A           16 PRGSDI-DATQLQGLLNQELLTGPPGDMFSLDECRSLVALMELKVNGRLDQEEFARLWKRL-------VHYQHVFQKVQ-   86 (174)
T ss_dssp             C-CCCE-EHHHHHHHHHHHHC-----CCCCHHHHHHHHHHHCSSCSSEECHHHHHHHHHHH-------HHHHHHHHHHC-
T ss_pred             CCCCcC-CHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHH-------HHHHHHHHHhc-
Confidence            456999 899999999987      55777888777764    688999999999998754       67999999999 


Q ss_pred             CCCCcccHHHHHHHHHhhc---cCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCC
Q psy2947         346 TKSGKLSFPDFLKVMHTHS---KAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNS  422 (441)
Q Consensus       346 d~~g~i~~~ef~~~~~~~~---~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg  422 (441)
                      |++|.|+.+||+.++....   +.....++++.+++.+| +++|.|+++||..++...      +.+..+|+.+|+|++|
T Consensus        87 d~~G~I~~~El~~~l~~l~~~~G~~~~~~~~~~l~~~~d-d~dG~I~~~EF~~~~~~~------~~~~~~F~~~D~d~~G  159 (174)
T 2i7a_A           87 TSPGVLLSSDLWKAIENTDFLRGIFISRELLHLVTLRYS-DSVGRVSFPSLVCFLMRL------EAMAKTFRNLSKDGKG  159 (174)
T ss_dssp             SBTTBEEGGGHHHHHHTCGGGTTCCCCHHHHHHHHHHHS-CTTSEECHHHHHHHHHHH------HHHHHHHHHHCSSSSC
T ss_pred             CCCCcCCHHHHHHHHHHhHhccCCCCCHHHHHHHHHHHc-CCCCeEcHHHHHHHHHHH------HHHHHHHHHhCCCCCC
Confidence            9999999999999998761   33456788999999999 999999999999999764      5788999999999999


Q ss_pred             -ceeHHHHHHHHh
Q psy2947         423 -KVRYEDFVKIAC  434 (441)
Q Consensus       423 -~i~~~ef~~~l~  434 (441)
                       .++++||+.++.
T Consensus       160 I~~~~~Ef~~~~~  172 (174)
T 2i7a_A          160 LYLTEMEWMSLVM  172 (174)
T ss_dssp             CCCCHHHHHHHHH
T ss_pred             ceecHHHHHHHHH
Confidence             459999998764

>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E

Probab=99.79  E-value=1.9e-18  Score=148.76  Aligned_cols=127  Identities=18%  Similarity=0.294  Sum_probs=109.5

Q ss_pred             hCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcc
Q psy2947         309 EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTV  388 (441)
Q Consensus       309 ~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i  388 (441)
                      +++|.|+++||..++........+...+..+|+.+|.|++|.|+++||..++..... ....+.++.+|+.+|.|++|.|
T Consensus        31 d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~Ef~~~~~~~~~-~~~~~~~~~~f~~~D~d~~G~i  109 (183)
T 1s6c_A           31 XPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLR-GTVHEKLRWTFNLYDINKDGYI  109 (183)
T ss_dssp             CTTSEECHHHHHHHHHHHSTTSCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHH-CCHHHHHHHHHHHHCTTCSSCE
T ss_pred             CCCCcCCHHHHHHHHHHHcCCCChHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHcC-CCHHHHHHHHHHHhCCCCCCeE
Confidence            689999999999999987655578899999999999999999999999999886632 3346789999999999999999


Q ss_pred             cHHHHHHHHHHh----CCC----CC----HHHHHHHHHHhCCCCCCceeHHHHHHHHhcc
Q psy2947         389 PAKYLKHVLVNW----GEG----LS----SKEVDQIFREANVTMNSKVRYEDFVKIACAP  436 (441)
Q Consensus       389 s~~ef~~~l~~~----~~~----l~----~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~~  436 (441)
                      +.+||+.++..+    |..    ++    .++++.+|+.+|.|++|.|+|+||+.++.+.
T Consensus       110 ~~~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~i~~~Ef~~~~~~~  169 (183)
T 1s6c_A          110 NKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESXQED  169 (183)
T ss_dssp             EHHHHHHHHHHHHHHTC-----------CHHHHHHHHHHHCTTCSSEECHHHHHHHTTSC
T ss_pred             cHHHHHHHHHHHHHHhccccCcCccHHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHhcC
Confidence            999999999886    632    44    3889999999999999999999999998653

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.79  E-value=3.2e-19  Score=158.39  Aligned_cols=164  Identities=18%  Similarity=0.210  Sum_probs=111.3

Q ss_pred             CcCCCCCccCC-CCccCCCC---CCCCC-CcccEEeccCCCc---C-cccCCCCCCCEEEccCCCCCcC-CcCccCCCCC
Q psy2947          37 TACQRNCSLEV-GGICSHIW---IPQYF-SHAFLLSLSYTPI---G-RRIFKCDTVEVLSLKSNSLTSL-PPDIGRLTNL  106 (441)
Q Consensus        37 ~~C~~~c~~~~-~~~c~~~~---~~~~l-~~L~~l~l~~n~i---~-~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L  106 (441)
                      .+||..|.|.. .+.|...+   +|..+ ++|+.|++++|.|   + ..+..+++|++|+|++|+|+.+ |..|..+++|
T Consensus         3 ~~CP~~C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L   82 (220)
T 2v9t_B            3 LHCPAACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL   82 (220)
T ss_dssp             CCSCTTSEEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC
T ss_pred             CCCCCCCEECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC
Confidence            36999999953 36676533   33322 4677777777744   2 2456677777777777777755 4557777777


Q ss_pred             cEEEccCCcCCCCCCchh-hhcCCCCCEEEccCCCCCccc-hhhcCCCCCCEEEccCCcCccCccccccccccccccccc
Q psy2947         107 RVLCLTDNCLQNASIPFT-LTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRST  184 (441)
Q Consensus       107 ~~L~l~~n~l~~~~~p~~-~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l  184 (441)
                      ++|+|++|.|+  .+|.. +..+++|++|+|++|+|+.++ ..|..+++|+.|+|++|.+                    
T Consensus        83 ~~L~Ls~N~l~--~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l--------------------  140 (220)
T 2v9t_B           83 NSLVLYGNKIT--ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL--------------------  140 (220)
T ss_dssp             CEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC--------------------
T ss_pred             CEEECCCCcCC--ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcC--------------------
Confidence            77777777776  55554 467777777777777776664 5677777777777777774                    


Q ss_pred             chhHHHHhhcccccCC-chhhhhhhhcccccccccCCCCCCCchhhhHHHh
Q psy2947         185 STRDEVLRKQKKLHQP-SRLQDLAVQSVIASKENFFEPGLFPGPLVDYIAR  234 (441)
Q Consensus       185 ~~~~~~l~~~~~~~~p-~~l~~l~~l~~l~l~~n~~~~~~~p~~~~~~l~~  234 (441)
                                  ..+| ..+..++.|+.+++++|++.+..--.++..|+..
T Consensus       141 ------------~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~~l~~~l~~  179 (220)
T 2v9t_B          141 ------------QTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHT  179 (220)
T ss_dssp             ------------SCCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHH
T ss_pred             ------------CEECHHHHhCCCCCCEEEeCCCCcCCCCccHHHHHHHHh
Confidence                        2333 2466778889999999999875444455555544

>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5

Probab=99.79  E-value=2.9e-18  Score=152.65  Aligned_cols=150  Identities=18%  Similarity=0.257  Sum_probs=119.3

Q ss_pred             CHHHHHHHHHHcCCCcCHHHHHHHH----H-hCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHH
Q psy2947         283 TLDELSVIMRSLGMSPTIAELKKYL----A-EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFL  357 (441)
Q Consensus       283 ~~~el~~~~~~~~~~~~~~~~~~~~----~-~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~  357 (441)
                      +.++++.+.+..+  .+..++..++    . +++|.|+++||..++........+...+..+|+.+|.|++|.|+++||.
T Consensus        35 ~~~~l~~l~~~~~--~s~~ei~~l~~~Fd~~d~~G~I~~~E~~~~l~~l~~~~~~~~~~~~~f~~~D~d~~G~I~~~Ef~  112 (224)
T 1s1e_A           35 RPEGLEQLEAQTN--FTKRELQVLYRGFKNECPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFV  112 (224)
T ss_dssp             ---CHHHHHHHSS--CCHHHHHHHHHHHHHHCTTSCBCHHHHHHHHHTTCTTSCCHHHHHHHHHHHCTTCSSCBCHHHHH
T ss_pred             CHHHHHHHHHHcC--CCHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHhcCCCCCcEeHHHHH
Confidence            3455555555443  3344443333    2 4899999999999999776555788999999999999999999999999


Q ss_pred             HHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh----CCC----C----CHHHHHHHHHHhCCCCCCcee
Q psy2947         358 KVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW----GEG----L----SSKEVDQIFREANVTMNSKVR  425 (441)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~----~~~----l----~~~~~~~l~~~~d~d~dg~i~  425 (441)
                      .++..... ....+.++.+|+.+|.|++|.|+.+||++++..+    |..    +    ..++++.+|+.+|.|+||.|+
T Consensus       113 ~~l~~~~~-~~~~~~l~~~F~~~D~d~dG~Is~~E~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~Is  191 (224)
T 1s1e_A          113 TALSILLR-GTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVT  191 (224)
T ss_dssp             HHHHHHHH-CCHHHHHHHHHHHHCTTCCSEECHHHHHHHHHHHHHHHTTCCCGGGCSSSHHHHHHHHHHHHCTTCSSCEE
T ss_pred             HHHHHHcc-CCHHHHHHHHHHHHcCCCCCeECHHHHHHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHHHhCCCCCCcEe
Confidence            99887642 3346789999999999999999999999999876    532    3    348899999999999999999


Q ss_pred             HHHHHHHHhc
Q psy2947         426 YEDFVKIACA  435 (441)
Q Consensus       426 ~~ef~~~l~~  435 (441)
                      |+||+.++.+
T Consensus       192 ~~EF~~~~~~  201 (224)
T 1s1e_A          192 LDEFLESCQE  201 (224)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999999864

>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...

Probab=99.79  E-value=2.4e-18  Score=144.05  Aligned_cols=143  Identities=24%  Similarity=0.400  Sum_probs=113.5

Q ss_pred             cceecccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCHH
Q psy2947         257 KVFTFKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPK  334 (441)
Q Consensus       257 ~~~l~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~  334 (441)
                      ...+++.++..++.+|..+|.+  |.| +.+++..+++.++..++..++..++.+++|.|+++||..++..         
T Consensus         9 ~~~l~~~~~~~l~~~F~~~D~d~~G~i-~~~el~~~l~~~g~~~~~~~~~~~~~~~~g~i~~~eF~~~~~~---------   78 (156)
T 1wdc_B            9 LTKLPQKQIQEMKEAFSMIDVDRDGFV-SKEDIKAISEQLGRAPDDKELTAMLKEAPGPLNFTMFLSIFSD---------   78 (156)
T ss_dssp             ---CCHHHHHHHHHHHHHHCTTCSSSC-CHHHHHHHHHHHSSCCCHHHHHHHHTTSSSCCCHHHHHHHHHH---------
T ss_pred             hccCCHHHHHHHHHHHHHHCCCCCCcC-cHHHHHHHHHHhCCCCCHHHHHHHHHhCCCcCcHHHHHHHHHH---------
Confidence            3456677888999999998875  788 8899999998888777777777777665666666666555542         


Q ss_pred             HHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy2947         335 EVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFR  414 (441)
Q Consensus       335 ~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~  414 (441)
                                                  ........+.++.+|+.+|++++|.|+.+||+.++..+|.++++++++.+|+
T Consensus        79 ----------------------------~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~  130 (156)
T 1wdc_B           79 ----------------------------KLSGTDSEETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNFNKDEMRMTFK  130 (156)
T ss_dssp             ----------------------------HTCSCCCHHHHHHHHHTTCTTCCSCEEHHHHHHHHHHSSSCCCHHHHHHHHH
T ss_pred             ----------------------------HhcCCChHHHHHHHHHHHCcCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence                                        2222233567888999999999999999999999999999999999999999


Q ss_pred             HhCCCCCCceeHHHHHHHHhccCC
Q psy2947         415 EANVTMNSKVRYEDFVKIACAPVP  438 (441)
Q Consensus       415 ~~d~d~dg~i~~~ef~~~l~~~~~  438 (441)
                      .+|.| +|.|+|+||+.+|.+.-+
T Consensus       131 ~~d~~-dg~i~~~eF~~~~~~~~~  153 (156)
T 1wdc_B          131 EAPVE-GGKFDYVKFTAMIKGSGE  153 (156)
T ss_dssp             HCCEE-TTEECHHHHHHHHHTSCC
T ss_pred             hcCCC-CCEEeHHHHHHHHhcCcc
Confidence            99999 999999999999976643

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.79  E-value=9.3e-19  Score=155.40  Aligned_cols=166  Identities=17%  Similarity=0.207  Sum_probs=108.1

Q ss_pred             CcCCCCCccCC-CCccCCC---CCCCCC-CcccEEeccCCCcC-----cccCCCCCCCEEEccCCCCCcCCc-CccCCCC
Q psy2947          37 TACQRNCSLEV-GGICSHI---WIPQYF-SHAFLLSLSYTPIG-----RRIFKCDTVEVLSLKSNSLTSLPP-DIGRLTN  105 (441)
Q Consensus        37 ~~C~~~c~~~~-~~~c~~~---~~~~~l-~~L~~l~l~~n~i~-----~~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~  105 (441)
                      .+||..|+|.. .+.|+..   .+|..+ ..++.|+|++|.|.     ..+..+++|++|+|++|+|+.+++ .|..+++
T Consensus         3 ~~CP~~C~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~   82 (220)
T 2v70_A            3 LACPEKCRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG   82 (220)
T ss_dssp             -CCCTTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             CCCCCCCEECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCC
Confidence            46999999953 3555542   233322 35567777777442     124566777777777777776655 3777777


Q ss_pred             CcEEEccCCcCCCCCCchhhhcCCCCCEEEccCCCCCcc-chhhcCCCCCCEEEccCCcCccCccccccccccccccccc
Q psy2947         106 LRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDAL-PGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRST  184 (441)
Q Consensus       106 L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l  184 (441)
                      |++|++++|.++ +..|..+..+++|++|+|++|+|+.+ |..|..+++|+.|+|++|.+                    
T Consensus        83 L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l--------------------  141 (220)
T 2v70_A           83 VNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI--------------------  141 (220)
T ss_dssp             CCEEECCSSCCC-CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCC--------------------
T ss_pred             CCEEECCCCccC-ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcC--------------------
Confidence            777777777776 33333466777777777777777665 46666777777777777763                    


Q ss_pred             chhHHHHhhcccccC-CchhhhhhhhcccccccccCCCCCCCchhhhHHHhh
Q psy2947         185 STRDEVLRKQKKLHQ-PSRLQDLAVQSVIASKENFFEPGLFPGPLVDYIARE  235 (441)
Q Consensus       185 ~~~~~~l~~~~~~~~-p~~l~~l~~l~~l~l~~n~~~~~~~p~~~~~~l~~~  235 (441)
                                  ..+ |..+..+++|+.+++++|++.+..--.++.+|+...
T Consensus       142 ------------~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~~~~~  181 (220)
T 2v70_A          142 ------------TTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLRKK  181 (220)
T ss_dssp             ------------CCBCTTTTTTCTTCCEEECCSCCEECSGGGHHHHHHHHHS
T ss_pred             ------------CEECHHHhcCCCCCCEEEecCcCCcCCCchHHHHHHHHhc
Confidence                        233 456777888999999999998754444556666533

>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}

Probab=99.79  E-value=6.5e-19  Score=145.18  Aligned_cols=138  Identities=26%  Similarity=0.465  Sum_probs=110.0

Q ss_pred             cccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCHHHHHH
Q psy2947         261 FKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVD  338 (441)
Q Consensus       261 ~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~  338 (441)
                      ++.++.++++.|..+|.+  |.| +..++..+++.++..++..++..++..++                           
T Consensus         2 s~~~~~~l~~~F~~~D~d~~G~i-~~~el~~~l~~~g~~~~~~~~~~~~~~~~---------------------------   53 (143)
T 3j04_B            2 DQSQIQEFKEAFNMIDQNRDGFI-DKEDLHDMLASMGKNPTDEYLEGMMSEAP---------------------------   53 (143)
T ss_dssp             CHHHHHHHHHHHTTTCSSCTTCC-CHHHHHHHHHHTSCCCCHHHHHTTTTTSS---------------------------
T ss_pred             CHHHHHHHHHHHHHhCCCCCCCc-CHHHHHHHHHHhCCCCCHHHHHHHHHhCC---------------------------
Confidence            456788889999888875  788 78899999888887777766666554444                           


Q ss_pred             HHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Q psy2947         339 AFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANV  418 (441)
Q Consensus       339 ~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~  418 (441)
                                |.|+++||..++..........+.++.+|+.+|.|++|.|+.+||+.++..+|.++++++++.+++.+|.
T Consensus        54 ----------g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~~~D~  123 (143)
T 3j04_B           54 ----------GPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMYREAPI  123 (143)
T ss_dssp             ----------SCCCHHHHHHHHHHTTTSSCCHHHHHHHHTTSCSSSCCCCCTTTHHHHHHTSSSCCCHHHHHHHHHHTTC
T ss_pred             ----------CCcCHHHHHHHHHHHhccCCcHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence                      4555555555444433333445778899999999999999999999999999999999999999999999


Q ss_pred             CCCCceeHHHHHHHHhcc
Q psy2947         419 TMNSKVRYEDFVKIACAP  436 (441)
Q Consensus       419 d~dg~i~~~ef~~~l~~~  436 (441)
                      |++|.|+|+||+++|.+.
T Consensus       124 d~dg~i~~~eF~~~~~~~  141 (143)
T 3j04_B          124 DKKGNFNYVEFTRILKHG  141 (143)
T ss_dssp             CSSSCCCSTHHHHHHHSS
T ss_pred             CCCCcCcHHHHHHHHhcc
Confidence            999999999999998764

>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2ju0_A

Probab=99.78  E-value=6.6e-18  Score=146.25  Aligned_cols=151  Identities=18%  Similarity=0.293  Sum_probs=121.1

Q ss_pred             CHHHHHHHHHHcCCCcCHHHHHHHH----Hh-CCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHH
Q psy2947         283 TLDELSVIMRSLGMSPTIAELKKYL----AE-KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFL  357 (441)
Q Consensus       283 ~~~el~~~~~~~~~~~~~~~~~~~~----~~-~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~  357 (441)
                      +.++++.+.+..  ..+..++..++    .+ ++|.|+++||..++..........+.+..+|+.+|.|++|.|+++||.
T Consensus         9 ~~~~l~~l~~~~--~~~~~~i~~~~~~fd~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~ef~   86 (190)
T 1fpw_A            9 SKDDLTCLKQST--YFDRREIQQWHKGFLRDCPSGQLAREDFVKIYKQFFPFGSPEDFANHLFTVFDKDNNGFIHFEEFI   86 (190)
T ss_dssp             TTHHHHHHTTTC--CSTHHHHHHHHHHHHHHCTTCCEEHHHHHHHHHHHCTTSCCSHHHHHHHHTCCSSCSSEECHHHHH
T ss_pred             CHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHCCCCCCcEeHHHHH
Confidence            344454444432  23344433332    34 899999999999999875544566789999999999999999999999


Q ss_pred             HHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh----C--------CCCCHHHHHHHHHHhCCCCCCcee
Q psy2947         358 KVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW----G--------EGLSSKEVDQIFREANVTMNSKVR  425 (441)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~----~--------~~l~~~~~~~l~~~~d~d~dg~i~  425 (441)
                      .++.... .....+.++.+|+.+|.|++|.|+++||+.++...    |        ...++++++.+|+.+|.|++|.|+
T Consensus        87 ~~~~~~~-~~~~~~~~~~~f~~~D~d~~G~i~~~ef~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~I~  165 (190)
T 1fpw_A           87 TVLSTTS-RGTLEEKLSWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEATPEMRVKKIFKLMDKNEDGYIT  165 (190)
T ss_dssp             HHHHHHS-CCCSTHHHHHHHHHHCSSCSSEEEHHHHHHHHHHHHTTSCSTTSSSCCCCCHHHHHHHHHHHHTTTCSSEEE
T ss_pred             HHHHHHc-cCCcHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHHHhccccCcccccchHHHHHHHHHHHhCCCCCCcCc
Confidence            9998774 33456889999999999999999999999999883    4        236788999999999999999999


Q ss_pred             HHHHHHHHhcc
Q psy2947         426 YEDFVKIACAP  436 (441)
Q Consensus       426 ~~ef~~~l~~~  436 (441)
                      ++||++++.+.
T Consensus       166 ~~Ef~~~~~~~  176 (190)
T 1fpw_A          166 LDEFREGSKVD  176 (190)
T ss_dssp             HHHHHHHHHSS
T ss_pred             HHHHHHHHHhC
Confidence            99999998753

>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A

Probab=99.78  E-value=2.9e-18  Score=146.11  Aligned_cols=120  Identities=18%  Similarity=0.302  Sum_probs=110.9

Q ss_pred             HhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCc
Q psy2947         308 AEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGT  387 (441)
Q Consensus       308 ~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~  387 (441)
                      .+++|.|+.+||..++........+...+..+|+.+|.|++|.|+++||..++...       +.++.+|+.+|.+++|.
T Consensus        18 ~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~ef~~~~~~~-------~~~~~~F~~~D~d~~G~   90 (172)
T 2znd_A           18 KDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYI-------TDWQNVFRTYDRDNSGM   90 (172)
T ss_dssp             TTCSSCEEHHHHHHHCCCSSSSCCCHHHHHHHHHHHCSSSSSEECHHHHHHHHHHH-------HHHHHHHHHHCTTCSSE
T ss_pred             CCCCCcCcHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHH-------HHHHHHHHHHCCCCCCc
Confidence            68999999999999998665355778899999999999999999999999988754       67899999999999999


Q ss_pred             ccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         388 VPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       388 is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      |+.+||+.++..+|..+++++++.+++.+|.|++|.|+|+||+.++.
T Consensus        91 i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~~  137 (172)
T 2znd_A           91 IDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCI  137 (172)
T ss_dssp             ECHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHH
T ss_pred             cCHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998875

>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...

Probab=99.78  E-value=1.5e-18  Score=146.10  Aligned_cols=125  Identities=19%  Similarity=0.421  Sum_probs=99.3

Q ss_pred             CCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCC---ChHHHHHHHHHhCCCCCC
Q psy2947         310 KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAED---IPKEVVDAFKAADTTKSG  386 (441)
Q Consensus       310 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~---~~~~~~~~f~~~D~~~~G  386 (441)
                      ++|.|+.+||..++... +...+.+.+..+|+.+|.+++|.|+++||..++........   ..+.++.+|+.+|.+++|
T Consensus        33 ~~G~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G  111 (162)
T 1top_A           33 GGGDISTKELGTVMRML-GQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADG  111 (162)
T ss_dssp             CSSEEEGGGHHHHHHHT-TCCCCHHHHHHHHHHHCTTSCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSS
T ss_pred             CCCcCCHHHHHHHHHHc-CCCCCHHHHHHHHHHHcCCCCCcEeHHHHHHHHHHHhccccccccHHHHHHHHHHhCCCCCC
Confidence            34444444444444433 12345667778888899999999999999988765432111   246788999999999999


Q ss_pred             cccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         387 TVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       387 ~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      .|+.+||+.++..+|..+++++++.+|+.+|.|++|.|+|+||+.++..
T Consensus       112 ~I~~~e~~~~l~~~g~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~~~  160 (162)
T 1top_A          112 FIDIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLKMMEG  160 (162)
T ss_dssp             CBCHHHHHHHHHTTTCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHS
T ss_pred             cCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999864

>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}

Probab=99.78  E-value=3.6e-19  Score=155.23  Aligned_cols=127  Identities=18%  Similarity=0.352  Sum_probs=96.7

Q ss_pred             HhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCc
Q psy2947         308 AEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGT  387 (441)
Q Consensus       308 ~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~  387 (441)
                      .+++|.|+.+||..++... ....+...+..+|+.+|.|++|.|+++||..++.... .....+.++.+|+.+|.|++|+
T Consensus        68 ~d~~G~Is~~El~~~l~~~-g~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~~~~~~-~~~~~~~l~~~F~~~D~d~~G~  145 (197)
T 3pm8_A           68 VDNSGTLSSQEILDGLKKI-GYQKIPPDIHQVLRDIDSNASGQIHYTDFLAATIDKQ-TYLKKEVCLIPFKFFDIDGNGK  145 (197)
T ss_dssp             TTCSSEECHHHHHHHHHHH-C----CHHHHHHHHC-------CEEHHHHHHTTCCHH-HHCSHHHHHHHHHHHCTTCSSE
T ss_pred             CCCCCcCCHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHHH-hhhhHHHHHHHHHHHCCCCCCC
Confidence            4667777777777777765 2335667899999999999999999999998765442 1223578999999999999999


Q ss_pred             ccHHHHHHHHHHh--CCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhcc
Q psy2947         388 VPAKYLKHVLVNW--GEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAP  436 (441)
Q Consensus       388 is~~ef~~~l~~~--~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~~  436 (441)
                      |+.+||++++...  +..+++++++.+|+.+|.|+||.|+|+||+.+|.+.
T Consensus       146 Is~~El~~~l~~~~~~~~~~~~~~~~l~~~~D~d~dG~Is~~EF~~~l~~~  196 (197)
T 3pm8_A          146 ISVEELKRIFGRDDIENPLIDKAIDSLLQEVDLNGDGEIDFHEFMLMMSKK  196 (197)
T ss_dssp             ECHHHHHHHHC----CCHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHCC
T ss_pred             CCHHHHHHHHHhcccCCCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHcC
Confidence            9999999999988  777889999999999999999999999999999763

>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR {Rattus norvegicus} PDB: 2g9b_A

Probab=99.78  E-value=1.9e-18  Score=157.69  Aligned_cols=175  Identities=15%  Similarity=0.240  Sum_probs=141.1

Q ss_pred             eecccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCH------HHHHHHH----HhCCCcccHHHHHHHHHhh
Q psy2947         259 FTFKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTI------AELKKYL----AEKGGKLSFPDFLKVMHTH  326 (441)
Q Consensus       259 ~l~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~------~~~~~~~----~~~~g~i~~~ef~~~~~~~  326 (441)
                      .+++.+..+++++|..+|.+  |.| +..|++.+++.++..++.      .++..++    .+++|.|+++||..++...
T Consensus         9 ~l~~~~~~~l~~~F~~~D~d~~G~i-~~~El~~~l~~l~~~~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~Ef~~~~~~~   87 (263)
T 2f33_A            9 QSSLITASQFFEIWLHFDADGSGYL-EGKELQNLIQELLQARKKAGLELSPEMKTFVDQYGQRDDGKIGIVELAHVLPTE   87 (263)
T ss_dssp             TTSCCCHHHHHHHHHHHCTTCSSSB-CSHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHTTGGGCCBCHHHHHHHTTSC
T ss_pred             hcCcccHHHHHHHHHHhCCCCCCCc-CHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhCCCCCCcCcHHHHHHHHhhh
Confidence            45677888999999999976  889 899999999987644433      4444444    4789999999999997542


Q ss_pred             --------cCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhc---cCCCChHHHHH----HHHHhCCCCCCcccHH
Q psy2947         327 --------SKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHS---KAEDIPKEVVD----AFKAADTTKSGTVPAK  391 (441)
Q Consensus       327 --------~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~---~~~~~~~~~~~----~f~~~D~~~~G~is~~  391 (441)
                              .......+.++.+|+.+|.|++|.|+.+||..++....   +.....+.+..    +|+.+|.+++|.|+++
T Consensus        88 ~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~  167 (263)
T 2f33_A           88 ENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKLELT  167 (263)
T ss_dssp             TTHHHHHGGGTSSCHHHHHHHHTTSSTTTCSSBCHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTCSSSSSCBCHH
T ss_pred             hhHHHHHHHhhccHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhcCCCCCCeEcHH
Confidence                    12345678899999999999999999999999988652   33344555555    9999999999999999


Q ss_pred             HHHHHHHH-------h-CCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         392 YLKHVLVN-------W-GEGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       392 ef~~~l~~-------~-~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      ||..++..       . +.....+.+..+|+.+|.|++|.|+.+||..++.
T Consensus       168 ef~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~is~~El~~~l~  218 (263)
T 2f33_A          168 EMARLLPVQENFLLKFQGIKMCGKEFNKAFELYDQDGNGYIDENELDALLK  218 (263)
T ss_dssp             HHHHHSCTTTCSHHHHHHTCCCHHHHHHHHHHHCCSSSSCEEHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Confidence            99998753       1 2446788999999999999999999999999884

>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8

Probab=99.78  E-value=3.1e-18  Score=148.57  Aligned_cols=131  Identities=16%  Similarity=0.342  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhh
Q psy2947         284 LDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTH  363 (441)
Q Consensus       284 ~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~  363 (441)
                      .++++.++..++            .+++|.|+.+||..++.. .....+.+.+..+|+.+|.|++|.|+++||..++...
T Consensus        26 ~~~l~~~F~~~D------------~d~~G~I~~~El~~~l~~-~~~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~~~~~   92 (191)
T 1y1x_A           26 NQELMEWFRAVD------------TDGSGAISVPELNAALSS-AGVPFSLATTEKLLHMYDKNHSGEITFDEFKDLHHFI   92 (191)
T ss_dssp             TSCHHHHHHHHC------------TTCSSSBCHHHHHHHHCB-TTBCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc------------CCCCCcCcHHHHHHHHHH-cCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHH
Confidence            345556666555            789999999999999943 2335678999999999999999999999999988754


Q ss_pred             ccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         364 SKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       364 ~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                             +.++.+|+.+|.|++|.|+.+||+.++..+|..+++++++.+|+.+|.|++|.|+|+||+.++.
T Consensus        93 -------~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~  156 (191)
T 1y1x_A           93 -------LSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMRKFDRQRRGSLGFDDYVELSI  156 (191)
T ss_dssp             -------HHHHHHHHHHCTTSSSCBCHHHHHHHHHTTSCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred             -------HHHHHHHHHhCCCCCCeEcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHH
Confidence                   6789999999999999999999999999999999999999999999999999999999999885

>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*

Probab=99.78  E-value=2.2e-18  Score=149.93  Aligned_cols=148  Identities=20%  Similarity=0.266  Sum_probs=110.9

Q ss_pred             eecccchHHHHHhhhccccC--CCccCHHHHH-----HHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCC
Q psy2947         259 FTFKTPYLEFRECFFLFARN--GTIKTLDELS-----VIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAED  331 (441)
Q Consensus       259 ~l~~~~~~~l~~~f~~~d~~--G~i~~~~el~-----~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~  331 (441)
                      .+++.++.+++++|..+|.+  |.| +.+|+.     .+++.++..++..++.                           
T Consensus        13 ~~s~~~~~~l~~~F~~~D~d~~G~i-~~~El~~~~~~~~l~~~g~~~~~~~~~---------------------------   64 (195)
T 1qv0_A           13 FDNPRWIKRHKHMFDFLDINGNGKI-TLDEIVSKASDDICAKLEATPEQTKRH---------------------------   64 (195)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCSSCB-CHHHHHHHHHHTHHHHTTCCHHHHHHH---------------------------
T ss_pred             cCCHHHHHHHHHHHhHcCCCCCCcC-cHHHHHHHHHHHHHHHcCCCccHHHHH---------------------------
Confidence            34677888888888888865  777 788887     4556555433222111                           


Q ss_pred             CHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccC------CCChHHHH----HHHHHhCCCCCCcccHHHHHHHHHHhC
Q psy2947         332 IPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKA------EDIPKEVV----DAFKAADTTKSGTVPAKYLKHVLVNWG  401 (441)
Q Consensus       332 ~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~------~~~~~~~~----~~f~~~D~~~~G~is~~ef~~~l~~~~  401 (441)
                       ...+..+|+.+|.|++|.|+++||..++......      ....+.++    .+|+.+|.|++|.|+.+||+++++.+|
T Consensus        65 -~~~~~~l~~~~D~d~~g~i~~~EF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~g  143 (195)
T 1qv0_A           65 -QVCVEAFFRGCGMEYGKEIAFPQFLDGWKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGSGTITLDEWKAYGKISG  143 (195)
T ss_dssp             -HHHHHHHHHHTTCCTTCCBCHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTC----CEECHHHHHHHHHHHS
T ss_pred             -HHHHHHHHHHcCCCCCceEcHHHHHHHHHHHHhhhhhcccccHHHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHhC
Confidence             0146778888999999999999999877654211      11112343    899999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         402 EGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       402 ~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      .++++++++.+|+.+|.|++|.|+|+||++++..
T Consensus       144 ~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~~  177 (195)
T 1qv0_A          144 ISPSQEDCEATFRHCDLDNAGDLDVDEMTRQHLG  177 (195)
T ss_dssp             SCCCHHHHHHHHHHSCCCTTSCEEHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHH
Confidence            9999999999999999999999999999998864

>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B

Probab=99.78  E-value=4.7e-18  Score=143.80  Aligned_cols=140  Identities=21%  Similarity=0.396  Sum_probs=112.9

Q ss_pred             eecccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCC-CcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCHHH
Q psy2947         259 FTFKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGM-SPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKE  335 (441)
Q Consensus       259 ~l~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~-~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~  335 (441)
                      .+++.++..++.+|..+|.+  |.| +..++..+++.++. .++..++..++...+|.|+++||..++..          
T Consensus        18 ~l~~~~~~~l~~~F~~~D~d~~G~i-~~~el~~~l~~~g~~~~~~~~~~~l~~~~dg~i~~~eF~~~~~~----------   86 (166)
T 2mys_B           18 MFDETEIEDFKEAFTVIDQNADGII-DKDDLRETFAAMGRLNVKNEELDAMIKEASGPINFTVFLTMFGE----------   86 (166)
T ss_pred             hCCHHHHHHHHHHHHHHCCCCCCcC-CHHHHHHHHHHhCCCCCCHHHHHHHHHHCCCCcCHHHHHHHHHH----------
Confidence            55677888899999998875  788 78999999988887 77777777777665666666666655542          


Q ss_pred             HHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHH
Q psy2947         336 VVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFRE  415 (441)
Q Consensus       336 ~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~  415 (441)
                                                 ........+.++.+|+.+|.|++|.|+.+||+.++..+|.++++++++.+|+.
T Consensus        87 ---------------------------~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~  139 (166)
T 2mys_B           87 ---------------------------KLKGADPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKNMWAA  139 (166)
T ss_pred             ---------------------------HhccCCcHHHHHHHHHHhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHh
Confidence                                       22222235678889999999999999999999999999988999999999999


Q ss_pred             hCCCCCCceeHHHHHHHHhcc
Q psy2947         416 ANVTMNSKVRYEDFVKIACAP  436 (441)
Q Consensus       416 ~d~d~dg~i~~~ef~~~l~~~  436 (441)
                      +|.|++|.|+|+||+.++.+.
T Consensus       140 ~D~d~dg~I~~~eF~~~~~~~  160 (166)
T 2mys_B          140 FPPDVAGNVDYKNICYVITHG  160 (166)
T ss_pred             cCCCCCCeEeHHHHHHHHHhc
Confidence            999999999999999998765

>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo pealeii}

Probab=99.78  E-value=2.2e-18  Score=149.48  Aligned_cols=152  Identities=16%  Similarity=0.177  Sum_probs=119.8

Q ss_pred             eecccchHHHHHhhhcc-ccC--CCccCHHHHHHHHHHc----CCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCC
Q psy2947         259 FTFKTPYLEFRECFFLF-ARN--GTIKTLDELSVIMRSL----GMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAED  331 (441)
Q Consensus       259 ~l~~~~~~~l~~~f~~~-d~~--G~i~~~~el~~~~~~~----~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~  331 (441)
                      .+++.+..+++++|..+ |.+  |.| +.+|+..++..+    +..++..++..++..             +        
T Consensus         5 ~ls~~~~~~l~~~F~~~~D~d~dG~i-~~~E~~~~l~~~~~~~g~~~~~~~~~~l~~~-------------~--------   62 (191)
T 2ccm_A            5 QLSDFQRNKILRVFNTFYDCNHDGVI-EWDDFELAIKKICNLHSWPTDGKKHNEARAT-------------L--------   62 (191)
T ss_dssp             CCCHHHHHHHHHHHHHHTCTTCSSEE-CHHHHHHHHHHHHHHHTCCTTSHHHHHHHHH-------------H--------
T ss_pred             hccHHHHHHHHHhccccccCCCCCee-eHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH-------------H--------
Confidence            34566778888889888 865  778 788888888776    554444444443321             1        


Q ss_pred             CHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhcc--------CCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCC
Q psy2947         332 IPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSK--------AEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEG  403 (441)
Q Consensus       332 ~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~--------~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~  403 (441)
                       ...+..+|+.+|.|++|.|+++||..++.....        .......++.+|+.+|.|++|.|+.+||+.++..+|  
T Consensus        63 -~~~~~~~~~~~D~d~dG~i~~~Ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~I~~~E~~~~l~~~g--  139 (191)
T 2ccm_A           63 -KLIWDGLRKYADENEDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKHEYSTVYMSYG--  139 (191)
T ss_dssp             -HHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCTTCSSBCCHHHHHHHHHTTT--
T ss_pred             -HHHHHHHHHhcCCCCCCeECHHHHHHHHHHHhccccchhhchHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhC--
Confidence             123566679999999999999999998876522        111235788999999999999999999999999888  


Q ss_pred             CCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         404 LSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       404 l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      +++++++.+|+.+|.|+||.|+|+||+.++..
T Consensus       140 ~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~~~  171 (191)
T 2ccm_A          140 IPKSDCDAAFDTLSDGGKTMVTREIFARLWTE  171 (191)
T ss_dssp             CCHHHHHHHHHHHTTTTTSCCBHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHH
Confidence            89999999999999999999999999998854

>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis thaliana} PDB: 1v1g_A 1v1f_A

Probab=99.78  E-value=4.7e-18  Score=149.39  Aligned_cols=155  Identities=14%  Similarity=0.238  Sum_probs=115.8

Q ss_pred             CCCccCHHHHHHHHHHcCCCcC-HHHHHHHH----Hh--CCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCc
Q psy2947         278 NGTIKTLDELSVIMRSLGMSPT-IAELKKYL----AE--KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGK  350 (441)
Q Consensus       278 ~G~i~~~~el~~~~~~~~~~~~-~~~~~~~~----~~--~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~  350 (441)
                      .|.+ +.++++.+....+.... ..++..++    .+  ++|.|+.+||..++..  ........+..+|+.+|.|++|.
T Consensus        14 ~g~l-~~~el~~l~~~~~~s~~~~~~l~~~F~~~D~d~~~~G~i~~~e~~~~l~~--~~~~~~~~~~~~f~~~D~d~~g~   90 (207)
T 2ehb_A           14 MRPP-GYEDPELLASVTPFTVEEVEALYELFKKLSSSIIDDGLIHKEEFQLALFR--NRNRRNLFADRIFDVFDVKRNGV   90 (207)
T ss_dssp             --------CHHHHHHHSSCCHHHHHHHHHHHHHHTTSSSCSSCEEHHHHHHHHHS--CTTCCCHHHHHHHHHHCTTCSSE
T ss_pred             cccc-CHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccCCCCccCHHHHHHHHhc--cccccHHHHHHHHHHhcCCCCCe
Confidence            3555 45666666554432221 11222223    45  8899999999999875  23344567788999999999999


Q ss_pred             ccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHH----HhCCCCCHHHHHHH----HHHhCCCCCC
Q psy2947         351 LSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLV----NWGEGLSSKEVDQI----FREANVTMNS  422 (441)
Q Consensus       351 i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~----~~~~~l~~~~~~~l----~~~~d~d~dg  422 (441)
                      |+++||..++..........+.++.+|+.+|.|++|.|+.+||+++++    ..|..+++++++.+    |+.+|.|++|
T Consensus        91 i~~~Ef~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~d~dG  170 (207)
T 2ehb_A           91 IEFGEFVRSLGVFHPSAPVHEKVKFAFKLYDLRQTGFIEREELKEMVVALLHESELVLSEDMIEVMVDKAFVQADRKNDG  170 (207)
T ss_dssp             ECHHHHHHHHGGGSTTSCHHHHHHHHHHHHCTTCCSSEEHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHCTTCSS
T ss_pred             EeHHHHHHHHHHHccCCCHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHcccccCHHHHHHHHHHHHHHhCCCCCC
Confidence            999999999987754444567899999999999999999999999996    46888998887554    4699999999


Q ss_pred             ceeHHHHHHHHhc
Q psy2947         423 KVRYEDFVKIACA  435 (441)
Q Consensus       423 ~i~~~ef~~~l~~  435 (441)
                      .|+|+||++++.+
T Consensus       171 ~I~~~Ef~~~~~~  183 (207)
T 2ehb_A          171 KIDIDEWKDFVSL  183 (207)
T ss_dssp             EECHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHh
Confidence            9999999999864

>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A

Probab=99.77  E-value=3.7e-18  Score=151.44  Aligned_cols=121  Identities=14%  Similarity=0.182  Sum_probs=109.1

Q ss_pred             HHHHhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCC
Q psy2947         305 KYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK  384 (441)
Q Consensus       305 ~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~  384 (441)
                      .++.+++|.|+.+||..++... +...+.+.+..+|+.+|.|++|.|+++||..++...       +.++.+|+.+|.|+
T Consensus        59 ~~D~d~~G~I~~~El~~~l~~~-g~~~~~~~~~~l~~~~D~d~dg~I~~~EF~~~~~~~-------~~l~~~F~~~D~d~  130 (220)
T 3sjs_A           59 GVDRDRSGTLEINELMMGQFPG-GIRLSPQTALRMMRIFDTDFNGHISFYEFMAMYKFM-------ELAYNLFVMNARAR  130 (220)
T ss_dssp             HHCTTCCSSBCHHHHHHCCBGG-GBCCCHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHH-------HHHHHHHHHHCCSS
T ss_pred             HhCCCCCCcCcHHHHHHHHHHc-CCCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHH-------HHHHHHHHHHCCCC
Confidence            3447899999999999998876 345678899999999999999999999999988765       67899999999999


Q ss_pred             CCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       385 ~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      +|+|+.+||+++++.+|.++++++++.+++.+| |+||.|+|+||++++.
T Consensus       131 ~G~I~~~El~~~l~~~g~~~~~~~~~~l~~~~d-d~dg~I~~~eF~~~~~  179 (220)
T 3sjs_A          131 SGTLEPHEILPALQQLGFYINQRTSLLLHRLFA-RGMAFCDLNCWIAICA  179 (220)
T ss_dssp             TTEECHHHHHHHHHHHTCCCCHHHHHHHHHHHC---CCSEEHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHhc-CCCCcCcHHHHHHHHH
Confidence            999999999999999999999999999999999 9999999999999884

>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B* 2p6b_B 1aui_B 1m63_B* 1tco_B*

Probab=99.77  E-value=4.2e-18  Score=142.20  Aligned_cols=123  Identities=22%  Similarity=0.354  Sum_probs=101.8

Q ss_pred             HhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCc
Q psy2947         308 AEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGT  387 (441)
Q Consensus       308 ~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~  387 (441)
                      .+++|.|+.+|| ..+.....    ...+..+|+.+|.+++|.|+++||..++..........+.++.+|+.+|.+++|.
T Consensus        17 ~d~~G~i~~~el-~~l~~~~~----~~~~~~~~~~~D~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~   91 (155)
T 3ll8_B           17 LDNSGSLSVEEF-MSLPELQQ----NPLVQRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGY   91 (155)
T ss_dssp             TTCSSSBCHHHH-TTSGGGTT----CTTHHHHHHHHCTTCSSSBCHHHHHHHHGGGCSSCCHHHHHHHHHHHHCTTCSSC
T ss_pred             cCCCCeEcHHHH-HHhhcccc----chHHHHHHHHHCCCCCCcCcHHHHHHHHHHHcccCCHHHHHHHHHHHhCCCCCCc
Confidence            455566666666 22222211    1267889999999999999999999999877555555688999999999999999


Q ss_pred             ccHHHHHHHHHH-hCCCCCHHHHHHHHHH----hCCCCCCceeHHHHHHHHhc
Q psy2947         388 VPAKYLKHVLVN-WGEGLSSKEVDQIFRE----ANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       388 is~~ef~~~l~~-~~~~l~~~~~~~l~~~----~d~d~dg~i~~~ef~~~l~~  435 (441)
                      |+.+||++++.. .|.++++++++.+++.    +|.|++|.|+|+||+.++..
T Consensus        92 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~  144 (155)
T 3ll8_B           92 ISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAVVGG  144 (155)
T ss_dssp             BCHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHCTTSSSSBCHHHHHHHHGG
T ss_pred             CcHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence            999999999999 6989999999999999    99999999999999999965

>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A

Probab=99.77  E-value=7.9e-18  Score=146.91  Aligned_cols=156  Identities=17%  Similarity=0.269  Sum_probs=133.2

Q ss_pred             ecccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCC-----CcCHHHHHHHHH----hCCCcccHHHHHHHHHhhcC
Q psy2947         260 TFKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGM-----SPTIAELKKYLA----EKGGKLSFPDFLKVMHTHSK  328 (441)
Q Consensus       260 l~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~-----~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~~  328 (441)
                      .++.+++++++ |..+|.+  |.| +.+|+..+++.++.     .++..++..++.    +++|.|+++||..++...  
T Consensus        27 ~~~~~~~~l~~-F~~~D~d~~G~i-~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~i~~~eF~~~~~~~--  102 (198)
T 1juo_A           27 FPGQTQDPLYG-YFAAVAGQDGQI-DADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVL--  102 (198)
T ss_dssp             CTTCCCCTTHH-HHHHHHTTTTEE-CHHHHHHHHHHHTTTCSSCCCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHH--
T ss_pred             CCccccHHHHH-HHHHhCCCCCcC-CHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhCCCCCCeECHHHHHHHHHHH--
Confidence            34567778888 8888875  889 89999999999875     567788777765    688999999999998754  


Q ss_pred             CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHH
Q psy2947         329 AEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKE  408 (441)
Q Consensus       329 ~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~  408 (441)
                           +.++.+|+.+|.|++|.|+.+||+.++... ......++++.+|+.+  |++|.|+++||.+++...      ++
T Consensus       103 -----~~~~~~F~~~D~d~~G~I~~~el~~~l~~~-g~~~~~~~~~~l~~~~--d~dg~i~~~eF~~~~~~~------~~  168 (198)
T 1juo_A          103 -----NGWRQHFISFDTDRSGTVDPQELQKALTTM-GFRLSPQAVNSIAKRY--STNGKITFDDYIACCVKL------RA  168 (198)
T ss_dssp             -----HHHHHHHHTTCTTCCSEECHHHHHHHHHHT-TCCCCHHHHHHHHHHT--CSSSSEEHHHHHHHHHHH------HH
T ss_pred             -----HHHHHHHHHhCCCCCCcCCHHHHHHHHHHh-CCCCCHHHHHHHHHHh--CCCCeEcHHHHHHHHHHH------HH
Confidence                 689999999999999999999999999876 3445678899999999  899999999999999875      67


Q ss_pred             HHHHHHHhCCCCCCceeH--HHHHHHH
Q psy2947         409 VDQIFREANVTMNSKVRY--EDFVKIA  433 (441)
Q Consensus       409 ~~~l~~~~d~d~dg~i~~--~ef~~~l  433 (441)
                      +..+|+.+|.|++|.|+.  ++|+.++
T Consensus       169 ~~~~F~~~D~d~~G~is~~~~~~l~~~  195 (198)
T 1juo_A          169 LTDSFRRRDTAQQGVVNFPYDDFIQCV  195 (198)
T ss_dssp             HHHHHHHTCTTCCSEEEEEHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCeEeecHHHHHHHH
Confidence            889999999999999987  6666544

>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A

Probab=99.77  E-value=7.2e-18  Score=146.23  Aligned_cols=123  Identities=16%  Similarity=0.287  Sum_probs=99.5

Q ss_pred             HhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCc
Q psy2947         308 AEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGT  387 (441)
Q Consensus       308 ~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~  387 (441)
                      .+++|.|+.+||..++...... .+ ..+..+|+.+|.|++|.|+++||..++....  ....+.++.+|+.+|.|++|.
T Consensus        63 ~d~~G~i~~~El~~~l~~~g~~-~~-~~~~~l~~~~D~d~~g~i~~~EF~~~~~~~~--~~~~~~l~~~F~~~D~d~~G~  138 (191)
T 3k21_A           63 EDGKGYITKEQLKKGLEKDGLK-LP-YNFDLLLDQIDSDGSGKIDYTEFIAAALDRK--QLSKKLIYCAFRVFDVDNDGE  138 (191)
T ss_dssp             TTCSSEECHHHHHHHHHHTTCC-CC-TTHHHHHHHHCTTCSSSEEHHHHHHHHSCGG--GCCHHHHHHHHHHHSTTCSSC
T ss_pred             CCCCCCCcHHHHHHHHHHcCCC-cH-HHHHHHHHHhCCCCCCeEeHHHHHHHHHhhh--hccHHHHHHHHHHhCCCCCCc
Confidence            3455666666666666554332 22 6678889999999999999999999885543  244678999999999999999


Q ss_pred             ccHHHHHHHHHH--hCCCCCH---HHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         388 VPAKYLKHVLVN--WGEGLSS---KEVDQIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       388 is~~ef~~~l~~--~~~~l~~---~~~~~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      |+.+||++++..  .+..+++   ++++.+|+.+|.|+||.|+|+||+++|.
T Consensus       139 Is~~El~~~l~~~~~~~~l~~~~~~~~~~~~~~~D~d~dG~Is~~EF~~~~~  190 (191)
T 3k21_A          139 ITTAELAHILYNGNKKGNITQRDVNRVKRMIRDVDKNNDGKIDFHEFSEMMK  190 (191)
T ss_dssp             BCHHHHHHHHHHSSSCSCCCHHHHHHHHHHHHHHCSSSSSSBCHHHHHHHHC
T ss_pred             CCHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHHhcCCCCCeECHHHHHHHHc
Confidence            999999999998  4566776   4689999999999999999999999885

>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Beroe abyssicola}

Probab=99.77  E-value=1.6e-18  Score=152.55  Aligned_cols=150  Identities=14%  Similarity=0.145  Sum_probs=111.7

Q ss_pred             ceecccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCC--CcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCH
Q psy2947         258 VFTFKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGM--SPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIP  333 (441)
Q Consensus       258 ~~l~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~--~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~  333 (441)
                      ..+++.++.++++.|..+|.+  |.| +..|+..+++.++.  .++..++..++..                        
T Consensus        28 ~~l~~~~~~~l~~~F~~~D~d~~G~i-~~~El~~~l~~~~~~~~~~~~~~~~l~~~------------------------   82 (208)
T 2hpk_A           28 EDLHPKMLSRLYKRFDTFDLDSDGKM-EMDEVLYWPDRMRQLVNATDEQVEKMRDA------------------------   82 (208)
T ss_dssp             --------CHHHHHHHHHCTTCSSEE-CHHHHTHHHHHHHHHSCCCHHHHHHHHHH------------------------
T ss_pred             HHcCHHHHHHHHHHHHHhCCCCCCCC-CHHHHHHHHHHHHhhcCCCHHHHHHHHHH------------------------
Confidence            345667778888888888875  777 78888888877664  4444444433311                        


Q ss_pred             HHHHHHHHhhcCCCCCcccHHHHHHHHH---------hhccCCCChHH-HHHHHHHhCCCCCCcccHHHHHHHHHHhCCC
Q psy2947         334 KEVVDAFKAADTTKSGKLSFPDFLKVMH---------THSKAEDIPKE-VVDAFKAADTTKSGTVPAKYLKHVLVNWGEG  403 (441)
Q Consensus       334 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~---------~~~~~~~~~~~-~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~  403 (441)
                        ++.+|+.+|.|++|.|+++||..++.         .........+. ++.+|+.+|.|++|.|+.+||+.+++.+|  
T Consensus        83 --~~~lf~~~D~d~dg~i~~~EF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~g--  158 (208)
T 2hpk_A           83 --VRVFFLHKGVEPVNGLLREDWVEANRVFAEAERERERRGEPSLIALLSNSYYDVLDDDGDGTVDVDELKTMMKAFD--  158 (208)
T ss_dssp             --HHHHHHHTTCBTTTBEEGGGHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHTT--
T ss_pred             --HHHHHHHhCCCCCCeEcHHHHHHHHHHHhhhhhhhhccCChHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHhC--
Confidence              02245899999999999999999876         33222232334 78899999999999999999999999998  


Q ss_pred             CCHHHHHHHHHHhCCCCCCceeHHHHHHHHhcc
Q psy2947         404 LSSKEVDQIFREANVTMNSKVRYEDFVKIACAP  436 (441)
Q Consensus       404 l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~~  436 (441)
                      +++++++.+|+.+|.|+||.|+|+||+.++...
T Consensus       159 ~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~~  191 (208)
T 2hpk_A          159 VPQEAAYTFFEKADTDKSGKLERTELVHLFRKF  191 (208)
T ss_dssp             SCTTHHHHHHHHHCTTCCSSBCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence            889999999999999999999999999998654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.77  E-value=2.4e-20  Score=191.78  Aligned_cols=157  Identities=8%  Similarity=0.103  Sum_probs=100.4

Q ss_pred             cCcccCCCCCCCEEEccCCCCCc------------------CCcCcc--CCCCCcEEEccCCcCCCCCCchhhhcCCCCC
Q psy2947          73 IGRRIFKCDTVEVLSLKSNSLTS------------------LPPDIG--RLTNLRVLCLTDNCLQNASIPFTLTFCKNLT  132 (441)
Q Consensus        73 i~~~~~~l~~L~~L~l~~n~l~~------------------lp~~~~--~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~  132 (441)
                      ||..++++++|++|+|++|.++.                  +|..++  ++++|++|++++|.+. +.+|..++++++|+
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~  276 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL-TKLPTFLKALPEMQ  276 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTC-SSCCTTTTTCSSCC
T ss_pred             CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCC-ccChHHHhcCCCCC
Confidence            34455566666666666666665                  666666  6666666666666666 56666666666666


Q ss_pred             EEEccCCC-CC--ccchhhcCC------CCCCEEEccCCcCccCcccccccccccc--cccccchhHHH-Hhhcccc-cC
Q psy2947         133 HLYLDNNL-LD--ALPGFLLSM------PQLDTVYRHGNHNYFKSTFMWYHSDIHA--RIRSTSTRDEV-LRKQKKL-HQ  199 (441)
Q Consensus       133 ~L~l~~n~-l~--~lp~~~~~l------~~L~~L~l~~N~~~~~~~~~~~~~~~p~--~l~~l~~~~~~-l~~~~~~-~~  199 (441)
                      +|++++|+ ++  .+|..++.+      ++|+.|++++|.+.          .+|.  .+..++.+..+ +.+|.+. .+
T Consensus       277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~----------~ip~~~~l~~l~~L~~L~L~~N~l~g~i  346 (636)
T 4eco_A          277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK----------TFPVETSLQKMKKLGMLECLYNQLEGKL  346 (636)
T ss_dssp             EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS----------SCCCHHHHTTCTTCCEEECCSCCCEEEC
T ss_pred             EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC----------ccCchhhhccCCCCCEEeCcCCcCccch
Confidence            66666666 64  366555554      66666666666642          4565  66677666666 7777775 77


Q ss_pred             CchhhhhhhhcccccccccCCCCCCCchhhhHHH-hhhcCCcccc
Q psy2947         200 PSRLQDLAVQSVIASKENFFEPGLFPGPLVDYIA-REYNQYHVCH  243 (441)
Q Consensus       200 p~~l~~l~~l~~l~l~~n~~~~~~~p~~~~~~l~-~~~~~~~~~~  243 (441)
                      | .+..+++|+.|++++|.+.  .+|..+..... .....+..+.
T Consensus       347 p-~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~~L~~L~Ls~N~  388 (636)
T 4eco_A          347 P-AFGSEIKLASLNLAYNQIT--EIPANFCGFTEQVENLSFAHNK  388 (636)
T ss_dssp             C-CCEEEEEESEEECCSSEEE--ECCTTSEEECTTCCEEECCSSC
T ss_pred             h-hhCCCCCCCEEECCCCccc--cccHhhhhhcccCcEEEccCCc
Confidence            7 7777788888888877766  36666554333 3334444443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.77  E-value=1.7e-18  Score=157.07  Aligned_cols=174  Identities=21%  Similarity=0.267  Sum_probs=140.0

Q ss_pred             cCCCC--CccC---CCCccCCCC---CCCC-CCcccEEeccCCCcC----cccCCCCCCCEEEccCCCCCcCCcC-ccCC
Q psy2947          38 ACQRN--CSLE---VGGICSHIW---IPQY-FSHAFLLSLSYTPIG----RRIFKCDTVEVLSLKSNSLTSLPPD-IGRL  103 (441)
Q Consensus        38 ~C~~~--c~~~---~~~~c~~~~---~~~~-l~~L~~l~l~~n~i~----~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l  103 (441)
                      +||..  |.|.   ..+.|+..+   +|.. .++|+.|++++|.+.    ..+..+++|++|+|++|.++.+++. |..+
T Consensus         3 ~Cp~~~gC~C~~~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l   82 (251)
T 3m19_A            3 TCETVTGCTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL   82 (251)
T ss_dssp             -CHHHHSSEEEGGGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred             cCCCCCceEcCCCCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccC
Confidence            57776  8883   235676532   3332 358999999999543    4578899999999999999977765 8999


Q ss_pred             CCCcEEEccCCcCCCCCCc-hhhhcCCCCCEEEccCCCCCccch-hhcCCCCCCEEEccCCcCccCcccccccccccccc
Q psy2947         104 TNLRVLCLTDNCLQNASIP-FTLTFCKNLTHLYLDNNLLDALPG-FLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARI  181 (441)
Q Consensus       104 ~~L~~L~l~~n~l~~~~~p-~~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l  181 (441)
                      ++|++|++++|.++  .+| ..+..+++|++|+|++|+|+.+|. .+..+++|+.|+|++|.+....         +..+
T Consensus        83 ~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---------~~~~  151 (251)
T 3m19_A           83 TELGTLGLANNQLA--SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP---------AGAF  151 (251)
T ss_dssp             TTCCEEECTTSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC---------TTTT
T ss_pred             CcCCEEECCCCccc--ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC---------HHHc
Confidence            99999999999998  555 557899999999999999999884 5788999999999999964322         3357


Q ss_pred             cccchhHHH-HhhcccccCCc-hhhhhhhhcccccccccCCCC
Q psy2947         182 RSTSTRDEV-LRKQKKLHQPS-RLQDLAVQSVIASKENFFEPG  222 (441)
Q Consensus       182 ~~l~~~~~~-l~~~~~~~~p~-~l~~l~~l~~l~l~~n~~~~~  222 (441)
                      ..++.+..+ +++|.+..+|+ .+..++.|+.+++++|++.+.
T Consensus       152 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          152 DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            777777777 88999988875 688899999999999999864

>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens} SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B* 1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C

Probab=99.77  E-value=4.8e-19  Score=147.41  Aligned_cols=141  Identities=28%  Similarity=0.470  Sum_probs=102.3

Q ss_pred             ecccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCHHHHH
Q psy2947         260 TFKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVV  337 (441)
Q Consensus       260 l~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~  337 (441)
                      +++.++..++++|..+|.+  |.| +..++..+++.++..                                 .+...+.
T Consensus         4 ls~~~~~~l~~~F~~~D~d~~G~i-~~~el~~~l~~~g~~---------------------------------~~~~~~~   49 (151)
T 1w7j_B            4 FNKDQLEEFKEAFELFDRVGDGKI-LYSQCGDVMRALGQN---------------------------------PTNAEVL   49 (151)
T ss_dssp             -------CHHHHHHHHCCSSSSEE-ESTTHHHHHHHTTCC---------------------------------CCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCcC-cHHHHHHHHHHcCCC---------------------------------CCHHHHH
Confidence            3455556666666666654  555 455566655555433                                 3445566


Q ss_pred             HHHHhhcCC--CCCcccHHHHHHHHHhhccC--CCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHH
Q psy2947         338 DAFKAADTT--KSGKLSFPDFLKVMHTHSKA--EDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIF  413 (441)
Q Consensus       338 ~~f~~~D~d--~~g~i~~~ef~~~~~~~~~~--~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~  413 (441)
                      .+|+.+|.+  ++|.|+++||..++......  ....+.+..+|+.+|.+++|.|+.+||++++..+|.++++++++.++
T Consensus        50 ~l~~~~d~~~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~  129 (151)
T 1w7j_B           50 KVLGNPKSDELKSRRVDFETFLPMLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEVETVL  129 (151)
T ss_dssp             HHTTCCCHHHHTTCEEEHHHHHHHHHHHCC--------CCHHHHHTTCTTSSSEEEHHHHHHHHHHSSSCCCHHHHHHHH
T ss_pred             HHHHHhCcCcCCCCcCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            677778888  88899999998888765321  11235677899999999999999999999999999999999999999


Q ss_pred             HHhCCCCCCceeHHHHHHHHhc
Q psy2947         414 REANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       414 ~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      +.+| |++|.|+|+||+++|.+
T Consensus       130 ~~~d-~~dg~i~~~eF~~~~~~  150 (151)
T 1w7j_B          130 AGHE-DSNGCINYEAFLKHILS  150 (151)
T ss_dssp             TTCC-CTTSEEEHHHHHHHTC-
T ss_pred             Hhcc-CCCCeEeHHHHHHHHhc
Confidence            9999 99999999999998864

>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR {Rattus norvegicus} PDB: 2g9b_A

Probab=99.77  E-value=2.4e-18  Score=157.05  Aligned_cols=170  Identities=16%  Similarity=0.223  Sum_probs=137.6

Q ss_pred             HHHHHhhhccccC--CCccCHHHHHHHHHHc---------CCCcCHHHHHHHHH----hCCCcccHHHHHHHHHhhc---
Q psy2947         266 LEFRECFFLFARN--GTIKTLDELSVIMRSL---------GMSPTIAELKKYLA----EKGGKLSFPDFLKVMHTHS---  327 (441)
Q Consensus       266 ~~l~~~f~~~d~~--G~i~~~~el~~~~~~~---------~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~---  327 (441)
                      ..+..+|..+|.+  |.| +.+|+..++...         .......++..++.    +++|.|+.+||..++....   
T Consensus        58 ~~~~~l~~~~D~~~~g~i-~~~Ef~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~  136 (263)
T 2f33_A           58 PEMKTFVDQYGQRDDGKI-GIVELAHVLPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETEELKNFLKDLLEKA  136 (263)
T ss_dssp             HHHHHHHHHHTTGGGCCB-CHHHHHHHTTSCTTHHHHHGGGTSSCHHHHHHHHTTSSTTTCSSBCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCcC-cHHHHHHHHhhhhhHHHHHHHhhccHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHhhc
Confidence            5566777777865  788 899998886532         23445666777664    6899999999999998763   


Q ss_pred             CCCCCHHHHHH----HHHhhcCCCCCcccHHHHHHHHHh-------hccCCCChHHHHHHHHHhCCCCCCcccHHHHHHH
Q psy2947         328 KAEDIPKEVVD----AFKAADTTKSGKLSFPDFLKVMHT-------HSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHV  396 (441)
Q Consensus       328 ~~~~~~~~~~~----~f~~~D~d~~g~i~~~ef~~~~~~-------~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~  396 (441)
                      +...+.+.+..    +|+.+|.+++|.|+++||..++..       ........+.++.+|+.+|+|++|.|+.+||+++
T Consensus       137 g~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~is~~El~~~  216 (263)
T 2f33_A          137 NKTVDDTKLAEYTDLMLKLFDSNNDGKLELTEMARLLPVQENFLLKFQGIKMCGKEFNKAFELYDQDGNGYIDENELDAL  216 (263)
T ss_dssp             TSCCCHHHHHHHHHHHHHHTCSSSSSCBCHHHHHHHSCTTTCSHHHHHHTCCCHHHHHHHHHHHCCSSSSCEEHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCCCCeEcHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence            33455666655    999999999999999999988754       1123344678999999999999999999999999


Q ss_pred             HHHhCC----CCCHHHHHHHHHH-hCCCCCCceeHHHHHHHHhcc
Q psy2947         397 LVNWGE----GLSSKEVDQIFRE-ANVTMNSKVRYEDFVKIACAP  436 (441)
Q Consensus       397 l~~~~~----~l~~~~~~~l~~~-~d~d~dg~i~~~ef~~~l~~~  436 (441)
                      ++.++.    .+++++++.+++. +|.|+||.|+|+||+.+|.+.
T Consensus       217 l~~~~~~~~~~~~~~e~~~~~~~~~D~d~dG~i~~~EF~~~~~~~  261 (263)
T 2f33_A          217 LKDLCEKNKQELDINNISTYKKNIMALSDGGKLYRTDLALILSAG  261 (263)
T ss_dssp             HHHHHHHCTTTCCTTTHHHHHHHHHTTSBTTEECGGGTHHHHCCS
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHhhccCCCCeEcHHHHHHHHhcc
Confidence            998876    7999999999997 799999999999999999765

>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}

Probab=99.76  E-value=6.2e-18  Score=145.22  Aligned_cols=122  Identities=14%  Similarity=0.289  Sum_probs=101.1

Q ss_pred             HhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCc
Q psy2947         308 AEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGT  387 (441)
Q Consensus       308 ~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~  387 (441)
                      .+++|.|+.+||..++....   .....+..+|+.+|.|++|.|+++||..++......  ..+.++.+|+.+|.|++|+
T Consensus        50 ~d~~G~i~~~El~~~l~~~g---~~~~~~~~~~~~~D~d~~g~i~~~Ef~~~~~~~~~~--~~~~~~~~F~~~D~d~~G~  124 (180)
T 3mse_B           50 TNHNGSLSHREIYTVLASVG---IKKWDINRILQALDINDRGNITYTEFMAGCYRWKNI--ESTFLKAAFNKIDKDEDGY  124 (180)
T ss_dssp             TTCSSSEEHHHHHHHHHHTT---CCHHHHHHHHHHHCTTCCSEECHHHHHHHHSCCTTC----CHHHHHHHHHCTTCSSC
T ss_pred             CCCCCcCCHHHHHHHHHHcC---CCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHhcccC--CHHHHHHHHHHHCCCCCCC
Confidence            45677777777777776553   235778999999999999999999999988765322  2367899999999999999


Q ss_pred             ccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCC--------CceeHHHHHHHHhcc
Q psy2947         388 VPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMN--------SKVRYEDFVKIACAP  436 (441)
Q Consensus       388 is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~d--------g~i~~~ef~~~l~~~  436 (441)
                      |+.+||++++.  +..+++++++.+|+.+|.|+|        |.|+|+||+.+|.+.
T Consensus       125 I~~~El~~~l~--~~~~~~~~~~~~~~~~d~~~d~~~~~~~~G~i~~~eF~~~l~~~  179 (180)
T 3mse_B          125 ISKSDIVSLVH--DKVLDNNDIDNFFLSVHSIKKGIPREHIINKISFQEFKDYMLST  179 (180)
T ss_dssp             BCHHHHHHHTT--TSSCCHHHHHHHHHHHHTC---------CCCBCHHHHHHHHHTT
T ss_pred             CCHHHHHHHHc--CCCCCHHHHHHHHHHhhhccCcccccccCCeeeHHHHHHHHHhc
Confidence            99999999998  667999999999999999988        999999999999765

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.76  E-value=2.6e-18  Score=149.15  Aligned_cols=137  Identities=20%  Similarity=0.293  Sum_probs=114.3

Q ss_pred             CcCCCCCccCCC-CccCCCC---CCCC-CCcccEEeccCC---CcCcccCCCCCCCEEEccCCCCCcCCcC-ccCCCCCc
Q psy2947          37 TACQRNCSLEVG-GICSHIW---IPQY-FSHAFLLSLSYT---PIGRRIFKCDTVEVLSLKSNSLTSLPPD-IGRLTNLR  107 (441)
Q Consensus        37 ~~C~~~c~~~~~-~~c~~~~---~~~~-l~~L~~l~l~~n---~i~~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~  107 (441)
                      .+||..|.|... +.|+..+   +|.. .++|+.|++++|   .+|..+..+++|+.|+|++|.|+.+++. |..+++|+
T Consensus         2 ~~CP~~C~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~   81 (193)
T 2wfh_A            2 SRCPTECTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL   81 (193)
T ss_dssp             --CCTTCEEETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCCCCCCEeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCC
Confidence            369999999533 6677632   3332 358999999999   5677888999999999999999988765 99999999


Q ss_pred             EEEccCCcCCCCCCchhhhcCCCCCEEEccCCCCCccch-hhcCCCCCCEEEccCCcCccCccccccc
Q psy2947         108 VLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPG-FLLSMPQLDTVYRHGNHNYFKSTFMWYH  174 (441)
Q Consensus       108 ~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~l~~N~~~~~~~~~~~~  174 (441)
                      +|++++|+|+ +..|..+..+++|++|+|++|+|+.+|. .|..+++|+.|++++|++.|.|.+.|+.
T Consensus        82 ~L~Ls~N~l~-~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~  148 (193)
T 2wfh_A           82 TLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLS  148 (193)
T ss_dssp             EEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHH
T ss_pred             EEECCCCccC-EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHH
Confidence            9999999998 4444578999999999999999999984 6888999999999999999999876643

>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein; HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A

Probab=99.76  E-value=4.1e-18  Score=147.63  Aligned_cols=146  Identities=18%  Similarity=0.291  Sum_probs=110.6

Q ss_pred             cccchHHHHHhhhccccC--CCccCHHHHH-----HHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCH
Q psy2947         261 FKTPYLEFRECFFLFARN--GTIKTLDELS-----VIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIP  333 (441)
Q Consensus       261 ~~~~~~~l~~~f~~~d~~--G~i~~~~el~-----~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~  333 (441)
                      ++.++.+++++|..+|.+  |.| +.+|+.     .+++.++..++..++..                            
T Consensus        11 ~~~~~~~l~~~F~~~D~d~~G~i-~~~El~~~~~~~~l~~~g~~~~~~~~~~----------------------------   61 (191)
T 1uhk_A           11 NPRWIGRHKHMFNFLDVNHNGKI-SLDEMVYKASDIVINNLGATPEQAKRHK----------------------------   61 (191)
T ss_dssp             CHHHHHHHHHHHHHHCTTCCSEE-EHHHHHHHHHHHHHHTSCCCHHHHHHHH----------------------------
T ss_pred             CHHHHHHHHHHHhhccCCCCCcC-cHHHHHHHHHHHHHHHcCCCchhHHHHH----------------------------
Confidence            455667777777777764  666 677776     45555553322221100                            


Q ss_pred             HHHHHHHHhhcCCCCCcccHHHHHHHHHhhccC------CCChHHH----HHHHHHhCCCCCCcccHHHHHHHHHHhCCC
Q psy2947         334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKA------EDIPKEV----VDAFKAADTTKSGTVPAKYLKHVLVNWGEG  403 (441)
Q Consensus       334 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~------~~~~~~~----~~~f~~~D~~~~G~is~~ef~~~l~~~~~~  403 (441)
                      ..+..+|+.+|.|++|.|+++||..++......      ....+.+    +.+|+.+|.|++|.|+.+||+++++.+|.+
T Consensus        62 ~~~~~l~~~~D~d~~g~i~~~EF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~g~~  141 (191)
T 1uhk_A           62 DAVEAFFGGAGMKYGVETDWPAYIEGWKKLATDELEKYAKNEPTLIRIWGDALFDIVDKDQNGAITLDEWKAYTKAAGII  141 (191)
T ss_dssp             HHHHHHHHHTTCCTTCEEEHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHhCcCCCCcCcHHHHHHHHHHHhcchhhhhhhhhHHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHhCCC
Confidence            146778889999999999999999887654211      1111233    389999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         404 LSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       404 l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      +++++++.+++.+|.|++|.|+|+||++++..
T Consensus       142 ~~~~~~~~~~~~~D~d~dG~i~~~eF~~~~~~  173 (191)
T 1uhk_A          142 QSSEDCEETFRVCDIDESGQLDVDEMTRQHLG  173 (191)
T ss_dssp             CSHHHHHHHHHHSCCCTTSCEEHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence            99999999999999999999999999999865

>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}

Probab=99.76  E-value=6.2e-18  Score=147.31  Aligned_cols=142  Identities=26%  Similarity=0.390  Sum_probs=115.4

Q ss_pred             cceecccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCHH
Q psy2947         257 KVFTFKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPK  334 (441)
Q Consensus       257 ~~~l~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~  334 (441)
                      ...++..++..++++|..+|.+  |.| +..++..+++.++..++..++..++...+                       
T Consensus        48 ~~~ls~~~~~~l~~~F~~~D~d~~G~i-~~~el~~~l~~lg~~~~~~~~~~l~~~~~-----------------------  103 (196)
T 3dtp_E           48 FAMFTQHQVQEFKEAFQLIDQDKDGFI-SKNDIRATFDSLGRLCTEQELDSMVAEAP-----------------------  103 (196)
T ss_dssp             SCSSCTTTHHHHHHHHHHHCCSCSSBC-CHHHHHHHHHTTSCCCCHHHHHHHHTTSS-----------------------
T ss_pred             hhhCCHHHHHHHHHHHHHHCCCCCCcC-CHHHHHHHHHHhCCCCCHHHHHHHHHHcc-----------------------
Confidence            3456788899999999999976  888 89999999998887777777766665434                       


Q ss_pred             HHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy2947         335 EVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFR  414 (441)
Q Consensus       335 ~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~  414 (441)
                                    |.|+++||..++..........+.+..+|+.+|.|++|+|+.+||+.++ .+|..+++++++.+|.
T Consensus       104 --------------g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l-~~g~~~~~~~~~~l~~  168 (196)
T 3dtp_E          104 --------------GPINFTMFLTIFGDRIAGTDEEDVIVNAFNLFDEGDGKCKEETLKRSLT-TWGEKFSQDEVDQALS  168 (196)
T ss_dssp             --------------SCCBHHHHHHHHHHCCCSSCCHHHHHHHHHTTCSSSSCCBHHHHHHHHH-HSSSCCCHHHHHHHHH
T ss_pred             --------------CCCcHHHHHHHHHHHhcCCCcHHHHHHHHHHHCCCCCCcCcHHHHHHHH-HcCCCCCHHHHHHHHH
Confidence                          5555555555554433333446788899999999999999999999999 9999999999999999


Q ss_pred             HhCCCCCCceeHHHHHHHHhccC
Q psy2947         415 EANVTMNSKVRYEDFVKIACAPV  437 (441)
Q Consensus       415 ~~d~d~dg~i~~~ef~~~l~~~~  437 (441)
                      .+|.|++|.|+|+||+.+|.+.-
T Consensus       169 ~~D~d~dG~I~~~EF~~~l~~~~  191 (196)
T 3dtp_E          169 EAPIDGNGLIDIKKFAQILTKGA  191 (196)
T ss_dssp             SSCEETTEECHHHHHHHHHSSCC
T ss_pred             HcCCCCCCEEeHHHHHHHHHcCC
Confidence            99999999999999999997653

>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein, EF-hand, calcium ION, metal binding protein; HET: 1PE P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A

Probab=99.76  E-value=6.9e-18  Score=146.12  Aligned_cols=127  Identities=22%  Similarity=0.356  Sum_probs=110.2

Q ss_pred             Hh-CCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCC
Q psy2947         308 AE-KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSG  386 (441)
Q Consensus       308 ~~-~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G  386 (441)
                      .+ ++|.|+.+||..++........+...+..+|+.+|.|++|.|+++||..++..... ....+.++.+|+.+|.|++|
T Consensus        36 ~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~-~~~~~~~~~~f~~~D~d~~G  114 (190)
T 1g8i_A           36 KDCPSGQLDAAGFQKIYKQFFPFGDPTKFATFVFNVFDENKDGRIEFSEFIQALSVTSR-GTLDEKLRWAFKLYDLDNDG  114 (190)
T ss_dssp             HHCTTSEEEHHHHHHHHHHHCTTSCTHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHHH-CCHHHHHHHHHHHHCTTCSS
T ss_pred             HhCCCCcCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCCCCeEeHHHHHHHHHHhcC-CCHHHHHHHHHHhhcCCCCC
Confidence            45 89999999999999987544456778999999999999999999999998887633 23467899999999999999


Q ss_pred             cccHHHHHHHHHHh----C--------CCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         387 TVPAKYLKHVLVNW----G--------EGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       387 ~is~~ef~~~l~~~----~--------~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      .|+.+||+.++..+    |        ...+++++..+|+.+|.|++|.|+++||++++.+
T Consensus       115 ~i~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~i~~~ef~~~~~~  175 (190)
T 1g8i_A          115 YITRNEMLDIVDAIYQMVGNTVELPEEENTPEKRVDRIFAMMDKNADGKLTLQEFQEGSKA  175 (190)
T ss_dssp             EEEHHHHHHHHHHHHHHC-----CCGGGSSHHHHHHHHHHHHCSSCSSEEEHHHHHHHHHH
T ss_pred             eECHHHHHHHHHHHHHHhCCccCCccccccHHHHHHHHHHHhcCCCCCcEeHHHHHHHHHh
Confidence            99999999999873    3        3467889999999999999999999999998854

>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}

Probab=99.76  E-value=4.3e-18  Score=144.89  Aligned_cols=119  Identities=12%  Similarity=0.139  Sum_probs=106.9

Q ss_pred             HhCCCcccHHHHHHHHHhhc-----CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCC
Q psy2947         308 AEKGGKLSFPDFLKVMHTHS-----KAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADT  382 (441)
Q Consensus       308 ~~~~g~i~~~ef~~~~~~~~-----~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~  382 (441)
                      .+++|.|+.+|+..+++...     ....+.++++.+|+.+|.|++|.|+++||..++...       ..++.+|+.|| 
T Consensus        15 ~~~dG~I~~~EL~~~l~~l~~~~~~g~~~~~~~~~~l~~~~D~d~~G~I~f~EF~~~~~~~-------~~l~~aF~~fD-   86 (174)
T 2i7a_A           15 VPRGSDIDATQLQGLLNQELLTGPPGDMFSLDECRSLVALMELKVNGRLDQEEFARLWKRL-------VHYQHVFQKVQ-   86 (174)
T ss_dssp             CC-CCCEEHHHHHHHHHHHHC-----CCCCHHHHHHHHHHHCSSCSSEECHHHHHHHHHHH-------HHHHHHHHHHC-
T ss_pred             CCCCCcCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHH-------HHHHHHHHHhc-
Confidence            46899999999999998762     335668899999999999999999999999988754       57899999999 


Q ss_pred             CCCCcccHHHHHHHHHHh----CCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         383 TKSGTVPAKYLKHVLVNW----GEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       383 ~~~G~is~~ef~~~l~~~----~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      |++|+|+.+||+.+++.+    |..+++++++.+++.+| |++|.|+|+||+.++.+
T Consensus        87 d~~G~I~~~El~~~l~~l~~~~G~~~~~~~~~~l~~~~d-d~dG~I~~~EF~~~~~~  142 (174)
T 2i7a_A           87 TSPGVLLSSDLWKAIENTDFLRGIFISRELLHLVTLRYS-DSVGRVSFPSLVCFLMR  142 (174)
T ss_dssp             SBTTBEEGGGHHHHHHTCGGGTTCCCCHHHHHHHHHHHS-CTTSEECHHHHHHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHhHhccCCCCCHHHHHHHHHHHc-CCCCeEcHHHHHHHHHH
Confidence            999999999999999999    99999999999999999 99999999999998753

>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT calmodulin chimera; calcium sensor, fluorescent protein; HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A* 3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A* 3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A

Probab=99.76  E-value=1e-17  Score=161.06  Aligned_cols=127  Identities=31%  Similarity=0.565  Sum_probs=108.2

Q ss_pred             HhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCc
Q psy2947         308 AEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGT  387 (441)
Q Consensus       308 ~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~  387 (441)
                      .+++|.|+.+||..++.... ...+.+++..+|+.+|.|++|.|+++||..++..........+.++.+|+.+|.|++|.
T Consensus       323 ~D~dG~Is~~EL~~~L~~lg-~~~s~eel~~Lf~~~D~DgdG~IsfeEFl~ll~~~~~~~~~~e~l~~aFk~fD~D~dG~  401 (450)
T 3sg6_A          323 KDGDGTITTKELGTVMRSLG-QNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGY  401 (450)
T ss_dssp             TTCSSEECHHHHHHHHHHTT-CCCCHHHHHHHHHTTCTTSSSSEEHHHHHHHHHC------CHHHHHHHHHHHCTTCSSE
T ss_pred             CCCCCcCcHHHHHHHHHHhC-CCCCHHHHHHHHHHhccCCCCcccHHHHHHHHHhhccccchhhHHHHHHHHhCCCCCCe
Confidence            46777777777777777643 34667889999999999999999999999999876555556788999999999999999


Q ss_pred             ccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         388 VPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       388 is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      |+.+||++++..+|..+++++++.++..+|.|+||.|+|+||+.+|..
T Consensus       402 Is~eELr~~L~~lG~~ls~eei~~Lf~~~D~D~DG~IsfdEFv~~L~~  449 (450)
T 3sg6_A          402 ISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA  449 (450)
T ss_dssp             ECHHHHHHHHHHHTCCCCHHHHHHHHHHHCTTSSSSEEHHHHHHHHC-
T ss_pred             EeHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999865

>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens}

Probab=99.76  E-value=5.6e-18  Score=148.32  Aligned_cols=100  Identities=17%  Similarity=0.258  Sum_probs=90.1

Q ss_pred             HHHHHHhhcCCCCCcccHHHHHHHHHhhcc----------------CCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         336 VVDAFKAADTTKSGKLSFPDFLKVMHTHSK----------------AEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       336 ~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~----------------~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      +..+|+.+|.|++|.|+++||..++.....                .....+.++.+|+.+|.|++|.|+.+||+.++..
T Consensus        63 ~~~l~~~~D~d~dg~i~~~EF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~  142 (202)
T 2bec_A           63 GDRIIESFFPDGSQRVDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRL  142 (202)
T ss_dssp             HHHHHHTTSCSSCCCCCHHHHHHHHGGGSCCCHHHHC-----CCCCTTSHHHHHHHHHHHHCTTCSSEECHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCcCcHHHHHHHHHHhcccchhcccccccccccccccHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHH
Confidence            778889999999999999999999887643                3344678999999999999999999999999999


Q ss_pred             h-CCCCCHHHHHHHHHH----hCCCCCCceeHHHHHHHHhc
Q psy2947         400 W-GEGLSSKEVDQIFRE----ANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       400 ~-~~~l~~~~~~~l~~~----~d~d~dg~i~~~ef~~~l~~  435 (441)
                      + |..+++++++.+++.    +|.|++|.|+|+||+.++.+
T Consensus       143 ~~g~~~~~~~~~~~~~~~~~~~D~d~dG~Is~~EF~~~~~~  183 (202)
T 2bec_A          143 MVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTKSLEK  183 (202)
T ss_dssp             SCCSCCCHHHHHHHHHHHHHHHCSSCSSSEEHHHHHHTTTT
T ss_pred             hcCCCCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence            9 999999999999998    99999999999999998864

>3akb_A Putative calcium binding protein; EF-hand, metal binding protein; 1.50A {Streptomyces coelicolor} PDB: 3aka_A

Probab=99.76  E-value=7.7e-18  Score=142.26  Aligned_cols=148  Identities=14%  Similarity=0.125  Sum_probs=110.4

Q ss_pred             hHHHHHhhhccccC--CCccCHHHHHHHHH----HcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCHHHHHH
Q psy2947         265 YLEFRECFFLFARN--GTIKTLDELSVIMR----SLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVD  338 (441)
Q Consensus       265 ~~~l~~~f~~~d~~--G~i~~~~el~~~~~----~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~  338 (441)
                      ++++++.|..+|.+  |.| +.+|+..++.    .++..++..++..+...                      ....+..
T Consensus         3 ~~~l~~~F~~~D~d~dG~i-~~~E~~~~l~~~~~~~g~~~~~~~~~~l~~~----------------------~~~~~~~   59 (166)
T 3akb_A            3 ERRIAARFTTFDQDGNGHI-DRSDFSGAAKAMLAEFGVAARSDRGQALYGG----------------------AEALWQG   59 (166)
T ss_dssp             HHHHHHHHHHHCTTCSSEE-CHHHHHHHHHHHHHHHTCCTTSHHHHHHHHH----------------------HHHHHHH
T ss_pred             HHHHHHHHhHHcCCCCCCc-CHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH----------------------HHHHHHH
Confidence            45666677776654  566 6677766533    33444444443333210                      0133567


Q ss_pred             HHHhhcCCCCCcccHHHHHHHHHhhccCCCC------hHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHH
Q psy2947         339 AFKAADTTKSGKLSFPDFLKVMHTHSKAEDI------PKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQI  412 (441)
Q Consensus       339 ~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~------~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l  412 (441)
                      +|+.+|.|++|.|+++||..++.........      .+.++.+|+.+|.+++|.|+.+||+.++..+|  +++++++.+
T Consensus        60 ~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~E~~~~l~~~~--~~~~~~~~~  137 (166)
T 3akb_A           60 LAGIADRDGDQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVADTARALTAFG--VPEDLARQA  137 (166)
T ss_dssp             HHHHHCTTSSSCEEHHHHHHTHHHHHHHSHHHHHHHHHHHHHHHHHHHCSSSSSCCBHHHHHHHHHHTT--CCHHHHHHH
T ss_pred             HHHHhCCCCCCcCcHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHhC--CCHHHHHHH
Confidence            7999999999999999999987765322210      23488999999999999999999999999998  899999999


Q ss_pred             HHHhCCCCCCceeHHHHHHHHhccC
Q psy2947         413 FREANVTMNSKVRYEDFVKIACAPV  437 (441)
Q Consensus       413 ~~~~d~d~dg~i~~~ef~~~l~~~~  437 (441)
                      |+.+|.|++|.|+|+||+.++..-+
T Consensus       138 ~~~~D~d~dg~i~~~ef~~~~~~~~  162 (166)
T 3akb_A          138 AAALDTDGDGKVGETEIVPAFARYF  162 (166)
T ss_dssp             HHHHCTTCSSBCCHHHHHHHHHHHT
T ss_pred             HHHhCCCCCCcCcHHHHHHHHHHHh
Confidence            9999999999999999999986543

>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent kinase, structural genomics, structural GE consortium, SGC, ATP-binding; 1.95A {Toxoplasma gondii}

Probab=99.76  E-value=3.9e-18  Score=147.78  Aligned_cols=126  Identities=17%  Similarity=0.308  Sum_probs=103.6

Q ss_pred             HhCCCcccHHHHHHHHHhhc----------CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHH
Q psy2947         308 AEKGGKLSFPDFLKVMHTHS----------KAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAF  377 (441)
Q Consensus       308 ~~~~g~i~~~ef~~~~~~~~----------~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f  377 (441)
                      .+++|.|+++||..++....          ....+...+..+|+.+|.|++|.|+++||..++.... .....+.++.+|
T Consensus        51 ~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~~g~i~~~ef~~~~~~~~-~~~~~~~~~~~F  129 (191)
T 3khe_A           51 NNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHILQSVDFDRNGYIEYSEFVTVCMDKQ-LLLSRERLLAAF  129 (191)
T ss_dssp             TTCSSEECHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHTCTTCSSSEEHHHHHHHHSCHH-HHCCHHHHHHHH
T ss_pred             CCCCCCCcHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHhc-ccchHHHHHHHH
Confidence            45667777777766665441          1113356789999999999999999999999875442 223357899999


Q ss_pred             HHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhcc
Q psy2947         378 KAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAP  436 (441)
Q Consensus       378 ~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~~  436 (441)
                      +.+|.|++|.|+.+||++++.  +..+++++++.+|+.+|.|++|.|+|+||++++.+-
T Consensus       130 ~~~D~d~~G~I~~~E~~~~l~--~~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~~  186 (191)
T 3khe_A          130 QQFDSDGSGKITNEELGRLFG--VTEVDDETWHQVLQECDKNNDGEVDFEEFVEMMQKI  186 (191)
T ss_dssp             HHHCTTCSSEECHHHHHHHTT--SSCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHH
T ss_pred             HHHCCCCcCcCCHHHHHHHHc--cCCCCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence            999999999999999999998  888999999999999999999999999999998653

>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A

Probab=99.76  E-value=2.4e-17  Score=139.39  Aligned_cols=146  Identities=14%  Similarity=0.260  Sum_probs=123.7

Q ss_pred             hhhccccC--CCccCHHHHHHHHHHcCC-----CcCHHHHHHHHH----hCCCcccHHHHHHHHHhhcCCCCCHHHHHHH
Q psy2947         271 CFFLFARN--GTIKTLDELSVIMRSLGM-----SPTIAELKKYLA----EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDA  339 (441)
Q Consensus       271 ~f~~~d~~--G~i~~~~el~~~~~~~~~-----~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~  339 (441)
                      .|..+|.+  |.| +.+|++.+++.++.     .++..++..++.    +++|.|+++||..++...       +.++.+
T Consensus         4 ~F~~~D~d~~G~i-~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~eF~~~~~~~-------~~~~~~   75 (165)
T 1k94_A            4 TYFSAVAGQDGEV-DAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAFKELWAAL-------NAWKEN   75 (165)
T ss_dssp             HHHHHHHGGGTSB-CHHHHHHHHHHHTTTTTSCCCCHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHH-------HHHHHH
T ss_pred             HHHHHhCCCCCcC-CHHHHHHHHHHhccccCCCCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHH-------HHHHHH
Confidence            46677765  889 89999999999886     567787777664    688999999999988753       679999


Q ss_pred             HHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCC
Q psy2947         340 FKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVT  419 (441)
Q Consensus       340 f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d  419 (441)
                      |+.+|.|++|.|+.+||..++... +.....++++.+|+.+  +++|.|+++||..++...      +.+..+|+.+|.|
T Consensus        76 F~~~D~d~~G~i~~~el~~~l~~~-g~~~~~~~~~~~~~~~--d~dg~i~~~eF~~~~~~~------~~~~~~F~~~D~d  146 (165)
T 1k94_A           76 FMTVDQDGSGTVEHHELRQAIGLM-GYRLSPQTLTTIVKRY--SKNGRIFFDDYVACCVKL------RALTDFFRKRDHL  146 (165)
T ss_dssp             HHHHCTTCCSBCCHHHHHHHHHHT-TCCCCHHHHHHHHHHH--CBTTBCBHHHHHHHHHHH------HHHHHHHHTTCTT
T ss_pred             HHHhCCCCCceECHHHHHHHHHHh-CCCCCHHHHHHHHHHh--CCCCeEcHHHHHHHHHHH------HHHHHHHHHhCCC
Confidence            999999999999999999999876 3445678899999999  899999999999999875      6788999999999


Q ss_pred             CCCceeHHHHHHHHh
Q psy2947         420 MNSKVRYEDFVKIAC  434 (441)
Q Consensus       420 ~dg~i~~~ef~~~l~  434 (441)
                      ++|.|+.+ |.+++.
T Consensus       147 ~~G~i~~~-~~~~l~  160 (165)
T 1k94_A          147 QQGSANFI-YDDFLQ  160 (165)
T ss_dssp             CCSEEEEE-HHHHHH
T ss_pred             CCCeEeee-HHHHHH
Confidence            99998776 666554

>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8

Probab=99.76  E-value=2.8e-17  Score=139.19  Aligned_cols=145  Identities=19%  Similarity=0.306  Sum_probs=123.1

Q ss_pred             hhhccccC--CCccCHHHHHHHHHHcCC-----CcCHHHHHHHHH----hCCCcccHHHHHHHHHhhcCCCCCHHHHHHH
Q psy2947         271 CFFLFARN--GTIKTLDELSVIMRSLGM-----SPTIAELKKYLA----EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDA  339 (441)
Q Consensus       271 ~f~~~d~~--G~i~~~~el~~~~~~~~~-----~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~  339 (441)
                      .|..+|.+  |.| +.+|+..+++.++.     .++..++..++.    +++|.|+++||..++...       +.++.+
T Consensus         6 ~F~~~D~d~~G~i-~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~eF~~~~~~~-------~~~~~~   77 (167)
T 1gjy_A            6 GYFASVAGQDGQI-DADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVL-------NGWRQH   77 (167)
T ss_dssp             HHHHHHCCTTSCB-CHHHHHHHHHHHTCSTTSCCCCHHHHHHHHHHHCTTCCSCBCHHHHHHHHHHH-------HHHHHH
T ss_pred             HHHHHHcCCCCcC-CHHHHHHHHHhhcccCCCCCcCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHH-------HHHHHH
Confidence            46677765  889 89999999999886     567777777664    689999999999998754       689999


Q ss_pred             HHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCC
Q psy2947         340 FKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVT  419 (441)
Q Consensus       340 f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d  419 (441)
                      |+.+|.|++|.|+.+||..++... +.....+++..+|+.+  +++|.|+++||..++...      +.+..+|+.+|.|
T Consensus        78 F~~~D~d~~G~i~~~el~~~l~~~-g~~~~~~~~~~~~~~~--d~dg~i~~~eF~~~~~~~------~~~~~~F~~~D~d  148 (167)
T 1gjy_A           78 FISFDSDRSGTVDPQELQKALTTM-GFRLNPQTVNSIAKRY--STSGKITFDDYIACCVKL------RALTDSFRRRDSA  148 (167)
T ss_dssp             HHHHCTTCCSEECHHHHHHHHHTT-TCCCCHHHHHHHHHHT--CBTTBEEHHHHHHHHHHH------HHHHHHHHHHCTT
T ss_pred             HHHhCCCCCCcCCHHHHHHHHHHc-CCCCCHHHHHHHHHHh--CcCCcCcHHHHHHHHHHH------HHHHHHHHHhCCC
Confidence            999999999999999999999876 3445678899999999  899999999999999775      6788999999999


Q ss_pred             CCCceeHH--HHHHH
Q psy2947         420 MNSKVRYE--DFVKI  432 (441)
Q Consensus       420 ~dg~i~~~--ef~~~  432 (441)
                      ++|.|+.+  +|+.+
T Consensus       149 ~~G~i~~~~~~~l~~  163 (167)
T 1gjy_A          149 QQGMVNFSYDDFIQC  163 (167)
T ss_dssp             CCSEEEEEHHHHHHH
T ss_pred             CCeeEEeeHHHHHHH
Confidence            99999965  45443

>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand, calcium-binding protein, guanylyl cyclase regulation, lyase; NMR {Bos taurus} SCOP: a.39.1.5

Probab=99.75  E-value=1.4e-17  Score=145.94  Aligned_cols=126  Identities=18%  Similarity=0.293  Sum_probs=107.2

Q ss_pred             Hh-CCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCC
Q psy2947         308 AE-KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSG  386 (441)
Q Consensus       308 ~~-~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G  386 (441)
                      .+ ++|.|+.+||..++..... ....+.+..+|+.+|.|++|.|+++||..++..... ....+.++.+|+.+|.|++|
T Consensus        33 ~~~~~G~i~~~e~~~~l~~~~~-~~~~~~~~~~f~~~D~d~~G~i~~~Ef~~~~~~~~~-~~~~~~~~~~F~~~D~d~~G  110 (204)
T 1jba_A           33 EECPSGTLFMHEFKRFFKVPDN-EEATQYVEAMFRAFDTNGDNTIDFLEYVAALNLVLR-GTLEHKLKWTFKIYDKDRNG  110 (204)
T ss_dssp             SSSTTCCEEHHHHHHHHHCCSS-STTHHHHHHHHHHHCCSSSSEECHHHHHHHHHHHSS-CCCTHHHHHHHHHHCSSCSS
T ss_pred             hhCCCCCcCHHHHHHHHHHhcC-CCcHHHHHHHHHHHcCCCCCeEeHHHHHHHHHHHcc-CCHHHHHHHHHHHhCCCCCC
Confidence            56 7888999999888886544 466788999999999999999999999999987643 34567899999999999999


Q ss_pred             cccHHHHHHHHHHh----C-------------CCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         387 TVPAKYLKHVLVNW----G-------------EGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       387 ~is~~ef~~~l~~~----~-------------~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      .|+.+||+.++..+    |             ...++++++.+|+.+|.|++|.|+|+||++++.+
T Consensus       111 ~I~~~E~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~f~~~D~d~dG~Is~~Ef~~~~~~  176 (204)
T 1jba_A          111 CIDRQELLDIVESIYKLKKACSVEVEAEQQGKLLTPEEVVDRIFLLVDENGDGQLSLNEFVEGARR  176 (204)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHSSCCTTSSTTTCCCCHHHHHHHHHHHHCCSCCSCBCHHHHHHHHTT
T ss_pred             cCcHHHHHHHHHHHHHHhCCCCccccccccCchhhHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHc
Confidence            99999999999876    3             1155678999999999999999999999998864

>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}

Probab=99.75  E-value=1.9e-17  Score=150.52  Aligned_cols=149  Identities=17%  Similarity=0.225  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHcCCCcCHHHHHHHH----H-hCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHH
Q psy2947         284 LDELSVIMRSLGMSPTIAELKKYL----A-EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLK  358 (441)
Q Consensus       284 ~~el~~~~~~~~~~~~~~~~~~~~----~-~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~  358 (441)
                      .++++.+.+..+  .+..++..++    . +++|.|+++||..++............+..+|+.+|.|++|.|+++||..
T Consensus        76 ~e~l~~l~~~~~--~s~~ei~~l~~~fd~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~  153 (256)
T 2jul_A           76 PEGLDQLQAQTK--FTKKELQSLYRGFKNECPTGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFVV  153 (256)
T ss_dssp             CTHHHHHHHHTT--SCHHHHHHHHHHHHHHCTTSSEEHHHHHHHHHHHCCSSCCHHHHHHHHHHSSCSCCSEECSHHHHH
T ss_pred             HHHHHHHHHHhC--CCHHHHHHHHHHHHhhCCCCcCCHHHHHHHHHHHcccCCcHHHHHHHHHHhccCCCCcCcHHHHHH
Confidence            344555554432  3344443333    2 37999999999999998866667788999999999999999999999999


Q ss_pred             HHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh----C--------CCCCHHHHHHHHHHhCCCCCCceeH
Q psy2947         359 VMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW----G--------EGLSSKEVDQIFREANVTMNSKVRY  426 (441)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~----~--------~~l~~~~~~~l~~~~d~d~dg~i~~  426 (441)
                      ++.... .....+.++.+|+.+|.|++|.|+.+||+.++..+    |        ...++++++.+|+.+|.|+||.|++
T Consensus       154 ~l~~~~-~~~~~~~l~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~Is~  232 (256)
T 2jul_A          154 GLSILL-RGTVHEKLKWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQDGVVTI  232 (256)
T ss_dssp             HHHHHH-SCCHHHHHHHHHHHTCCSSSSCBCHHHHHHHHHHHHHHCCCCCSCCSCCCCHHHHHHHHHHHSCCSTTCSBCH
T ss_pred             HHHHHh-ccChHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHhCCCCCcccchhhHHHHHHHHHHHHCCCCCCcEeH
Confidence            998764 33446789999999999999999999999999876    5        3457889999999999999999999


Q ss_pred             HHHHHHHhc
Q psy2947         427 EDFVKIACA  435 (441)
Q Consensus       427 ~ef~~~l~~  435 (441)
                      +||++++.+
T Consensus       233 ~Ef~~~~~~  241 (256)
T 2jul_A          233 DEFLETCQK  241 (256)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999999865

>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal specific guanylate cyclase activator; 2.40A {Bos taurus} SCOP: a.39.1.5

Probab=99.75  E-value=1.8e-17  Score=143.87  Aligned_cols=150  Identities=19%  Similarity=0.339  Sum_probs=118.0

Q ss_pred             CHHHHHHHHHHcCCCcCHHHHHHH----HHh-CCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHH
Q psy2947         283 TLDELSVIMRSLGMSPTIAELKKY----LAE-KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFL  357 (441)
Q Consensus       283 ~~~el~~~~~~~~~~~~~~~~~~~----~~~-~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~  357 (441)
                      +..+++.+.+...  .+..++..+    ..+ ++|.|+.+||..++............+..+|+.+|.|++|.|+++||.
T Consensus         9 ~~~~l~~l~~~~~--~~~~~i~~~f~~fd~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~Ef~   86 (193)
T 1bjf_A            9 RPEVMQDLLESTD--FTEHEIQEWYKGFLRDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFI   86 (193)
T ss_dssp             CHHHHHHHHHHSS--CCHHHHHHHHHHHHHHSTTSEEEHHHHHHHHTTTSSSSCCHHHHHHHHHHHCSSCSSEEEHHHHH
T ss_pred             CHHHHHHHHHHcC--CCHHHHHHHHHHHHHHCCCCCcCHHHHHHHHHHhcCcCChHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence            4555555544422  233333332    346 899999999999998775545567789999999999999999999999


Q ss_pred             HHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh----C--CCCC------HHHHHHHHHHhCCCCCCcee
Q psy2947         358 KVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW----G--EGLS------SKEVDQIFREANVTMNSKVR  425 (441)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~----~--~~l~------~~~~~~l~~~~d~d~dg~i~  425 (441)
                      .++.... .....+.++.+|+.+|.|++|.|+++||+.++..+    |  .+++      .+.+..+|+.+|.|++|.|+
T Consensus        87 ~~~~~~~-~~~~~~~~~~~f~~~D~d~~G~I~~~E~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~I~  165 (193)
T 1bjf_A           87 IALSVTS-RGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLS  165 (193)
T ss_dssp             HHHHHHT-SSCHHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHTTCCCTTTSCGGGSSHHHHHHHHHHHSCTTCSSEEC
T ss_pred             HHHHHHc-CCCHHHHHHHHHhhcCCCCCCeECHHHHHHHHHHHHHHhccccCCCcccccHHHHHHHHHHHhCCCCCCeEe
Confidence            9988763 33446789999999999999999999999999874    4  2344      35589999999999999999


Q ss_pred             HHHHHHHHhc
Q psy2947         426 YEDFVKIACA  435 (441)
Q Consensus       426 ~~ef~~~l~~  435 (441)
                      ++||++++..
T Consensus       166 ~~Ef~~~~~~  175 (193)
T 1bjf_A          166 LEEFIRGAKS  175 (193)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999998853

>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport, ionic channel, membrane, PO potassium channel, potassium transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A

Probab=99.75  E-value=8.3e-18  Score=150.23  Aligned_cols=126  Identities=18%  Similarity=0.276  Sum_probs=107.9

Q ss_pred             hCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcc
Q psy2947         309 EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTV  388 (441)
Q Consensus       309 ~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i  388 (441)
                      +++|.|+.+||..++............+..+|+.+|.|++|.|+++||..++..... ....+.++.+|+.+|.|++|+|
T Consensus        77 d~~G~Is~~ef~~~l~~~~~~~~~~~~~~~lf~~~D~d~~G~I~~~Ef~~~l~~~~~-~~~~~~l~~~F~~~D~d~dG~I  155 (229)
T 3dd4_A           77 CPSGVVNEETFKEIYSQFFPQGDSTTYAHFLFNAFDTDHNGAVSFEDFIKGLSILLR-GTVQEKLNWAFNLYDINKDGYI  155 (229)
T ss_dssp             CCSCCCCHHHHHHHHHHHSCSSSHHHHHHHHHHTTCSSCCSSCCHHHHHHHHHHHHH-SCHHHHHHHHHHHHCTTCSSCC
T ss_pred             CCCCCcCHHHHHHHHHHHCCCCCcHHHHHHHHHHcCCCCCCeEeHHHHHHHHHHHcC-CChHHHHHHHHHHhCCCCCCeE
Confidence            578899999999988877655566778899999999999999999999999887643 2336789999999999999999


Q ss_pred             cHHHHHHHHHHh------------CCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         389 PAKYLKHVLVNW------------GEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       389 s~~ef~~~l~~~------------~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      +.+||+.++..+            +..+++++++.+|+.+|.|+||.|+|+||++++.+
T Consensus       156 s~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~Is~~EF~~~~~~  214 (229)
T 3dd4_A          156 TKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMDKNKDGVVTIDEFIESCQK  214 (229)
T ss_dssp             BHHHHHHHHHHHHHHCC-----------CCTHHHHHHHHHCSSCSSBCCHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHhccccCCCcchhhHHHHHHHHHHHhcCCCCCcEeHHHHHHHHHh
Confidence            999999999986            55677889999999999999999999999998864

>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A

Probab=99.75  E-value=3.8e-17  Score=138.09  Aligned_cols=124  Identities=17%  Similarity=0.258  Sum_probs=112.7

Q ss_pred             HHHHHHHhCCCcccHHHHHHHHHhhcCC----CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHH
Q psy2947         302 ELKKYLAEKGGKLSFPDFLKVMHTHSKA----EDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAF  377 (441)
Q Consensus       302 ~~~~~~~~~~g~i~~~ef~~~~~~~~~~----~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f  377 (441)
                      .+..++.+++|.|+.+||..++......    ..+.+++..+|+.+|.|++|.|+++||..++...       +.++.+|
T Consensus         4 ~F~~~D~d~~G~i~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~eF~~~~~~~-------~~~~~~F   76 (165)
T 1k94_A            4 TYFSAVAGQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAFKELWAAL-------NAWKENF   76 (165)
T ss_dssp             HHHHHHHGGGTSBCHHHHHHHHHHHTTTTTSCCCCHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHH-------HHHHHHH
T ss_pred             HHHHHhCCCCCcCCHHHHHHHHHHhccccCCCCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHH-------HHHHHHH
Confidence            3566778999999999999999986542    4678899999999999999999999999988764       6789999


Q ss_pred             HHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         378 KAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       378 ~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      +.+|.+++|.|+.+||+.+++.+|..+++++++.+++.+  |++|.|+|+||+.++.
T Consensus        77 ~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~--d~dg~i~~~eF~~~~~  131 (165)
T 1k94_A           77 MTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRY--SKNGRIFFDDYVACCV  131 (165)
T ss_dssp             HHHCTTCCSBCCHHHHHHHHHHTTCCCCHHHHHHHHHHH--CBTTBCBHHHHHHHHH
T ss_pred             HHhCCCCCceECHHHHHHHHHHhCCCCCHHHHHHHHHHh--CCCCeEcHHHHHHHHH
Confidence            999999999999999999999999999999999999999  8899999999999875

>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR {Schizosaccharomyces pombe} SCOP: a.39.1.5

Probab=99.75  E-value=1.1e-17  Score=137.33  Aligned_cols=89  Identities=29%  Similarity=0.511  Sum_probs=74.2

Q ss_pred             CCCCcccHHHHHHHHHhhccCC--CChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCc
Q psy2947         346 TKSGKLSFPDFLKVMHTHSKAE--DIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSK  423 (441)
Q Consensus       346 d~~g~i~~~ef~~~~~~~~~~~--~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~  423 (441)
                      +++|.|+++||..++.......  ...+.++.+|+.+|++++|.|+.+||+++++.+|.++++++++.+++.+|. ++|.
T Consensus        49 ~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~-~dg~  127 (140)
T 1ggw_A           49 TLPAEVDMEQFLQVLNRPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPV-KDGM  127 (140)
T ss_dssp             TSCSSEEHHHHHHHHCTTSSSSSSCCHHHHHHHHHTTCSSCSSCCCHHHHHHHHHHHHSCSCHHHHHHHHHHTTC-SSCC
T ss_pred             CCCCcCcHHHHHHHHHHHhcccCcccHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CCCc
Confidence            5666666666666665543221  224788999999999999999999999999999999999999999999999 9999


Q ss_pred             eeHHHHHHHHhc
Q psy2947         424 VRYEDFVKIACA  435 (441)
Q Consensus       424 i~~~ef~~~l~~  435 (441)
                      |+|+||+.+|.+
T Consensus       128 i~~~eF~~~~~~  139 (140)
T 1ggw_A          128 VNYHDFVQMILA  139 (140)
T ss_dssp             STTTHHHHHHHC
T ss_pred             EeHHHHHHHHhc
Confidence            999999999865

>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate cyclase activating protein, GCAP1, GCAP-1, calcium, lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}

Probab=99.75  E-value=1.7e-17  Score=144.75  Aligned_cols=129  Identities=17%  Similarity=0.332  Sum_probs=102.2

Q ss_pred             HHHh-CCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCC
Q psy2947         306 YLAE-KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK  384 (441)
Q Consensus       306 ~~~~-~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~  384 (441)
                      ++.+ ++|.|+++||..++..........+.+..+|+.+|.|++|.|+++||..++..... ....+.++.+|+.+|.|+
T Consensus        23 fd~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~G~I~~~Ef~~~~~~~~~-~~~~~~~~~~F~~~D~d~  101 (198)
T 2r2i_A           23 FMTECPSGQLTLYEFKQFFGLKNLSPSANKYVEQMFETFDFNKDGYIDFMEYVAALSLVLK-GKVDQKLRWYFKLYDVDG  101 (198)
T ss_dssp             HHHHCTTSEECHHHHHHHHTCCSCCHHHHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHSS-CCHHHHHHHHHHHHCTTC
T ss_pred             HHHhCCCCcCCHHHHHHHHHHhCCCcchHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHHcc-CchHHHHHHHHHHhcCCC
Confidence            3355 78888888888888654322222356889999999999999999999998887643 334678889999999999


Q ss_pred             CCcccHHHHHHHHHHhC------CCCCHHH-HHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         385 SGTVPAKYLKHVLVNWG------EGLSSKE-VDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       385 ~G~is~~ef~~~l~~~~------~~l~~~~-~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      +|.|+++||+.++..++      ..++.++ +..+|+.+|.|++|.|+|+||+.++.+
T Consensus       102 ~G~I~~~Ef~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~  159 (198)
T 2r2i_A          102 NGCIDRGELLNIIKAIRAINRCNEAMTAEEFTNMVFDKIDINGDGELSLEEFMEGVQK  159 (198)
T ss_dssp             SSCEEHHHHHHHHHHTTGGGGSSSCCCHHHHHHHHHHHHCTTCSSEECHHHHHHHHTT
T ss_pred             CCcCcHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHc
Confidence            99999999999998875      4556544 889999999999999999999988853

>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S 3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A

Probab=99.75  E-value=2e-17  Score=141.02  Aligned_cols=123  Identities=15%  Similarity=0.232  Sum_probs=111.0

Q ss_pred             HHHHHHhCCCcccHHHHHHHHHhhcC-------CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHH
Q psy2947         303 LKKYLAEKGGKLSFPDFLKVMHTHSK-------AEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVD  375 (441)
Q Consensus       303 ~~~~~~~~~g~i~~~ef~~~~~~~~~-------~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~  375 (441)
                      +..++ +++|.|+.+||..++....+       ...+.+.+..+|+.+|.|++|.|+++||..++...       +.++.
T Consensus        10 F~~~D-d~~G~i~~~el~~~l~~~~g~~~~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~eF~~~~~~~-------~~~~~   81 (173)
T 1alv_A           10 FAQLA-GDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNI-------KKWQA   81 (173)
T ss_dssp             HHHHH-GGGTSBCHHHHHHHHHHHHHTCSTTCCSCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHH-------HHHHH
T ss_pred             HHHHh-CCCCCcCHHHHHHHHHHhhhcccccccCCCCHHHHHHHHHHHcCCCCCccCHHHHHHHHHHH-------HHHHH
Confidence            34455 88999999999999988622       34568899999999999999999999999988754       67899


Q ss_pred             HHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         376 AFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       376 ~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      +|+.+|.+++|.|+.+||+.++..+|..+++++++.+++.+| |++|.|+|+||+.++.
T Consensus        82 ~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d-d~dg~i~~~eF~~~~~  139 (173)
T 1alv_A           82 IYKQFDVDRSGTIGSSELPGAFEAAGFHLNEHLYSMIIRRYS-DEGGNMDFDNFISCLV  139 (173)
T ss_dssp             HHHHHCTTCCSSBCTTTHHHHHHHHTCCCCHHHHHHHHHHHT-CSSSCBCHHHHHHHHH
T ss_pred             HHHHHCCCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHhc-CCCCcCcHHHHHHHHH
Confidence            999999999999999999999999999999999999999999 9999999999998875

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.75  E-value=1.3e-18  Score=164.13  Aligned_cols=179  Identities=18%  Similarity=0.188  Sum_probs=152.5

Q ss_pred             CCcccEEeccCC---CcCcccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhc---------
Q psy2947          60 FSHAFLLSLSYT---PIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTF---------  127 (441)
Q Consensus        60 l~~L~~l~l~~n---~i~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~---------  127 (441)
                      +++|+.|+|++|   .+|..+..+++|++|+|++|.++.+|..++.+++|++|++++|.+. +.+|..+..         
T Consensus       103 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~-~~~p~~~~~~~~~~~~~~  181 (328)
T 4fcg_A          103 LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPEL-TELPEPLASTDASGEHQG  181 (328)
T ss_dssp             GTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTC-CCCCSCSEEEC-CCCEEE
T ss_pred             CCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCc-cccChhHhhccchhhhcc
Confidence            789999999999   5678888999999999999999999999999999999999998877 789987765         


Q ss_pred             CCCCCEEEccCCCCCccchhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-Hhhccc-ccCCchhhh
Q psy2947         128 CKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKK-LHQPSRLQD  205 (441)
Q Consensus       128 l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~-~~~p~~l~~  205 (441)
                      +++|++|++++|+|+.+|..++.+++|+.|++++|.+.          .+|..+..++.+..+ +.+|.+ ..+|..+..
T Consensus       182 l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~----------~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~  251 (328)
T 4fcg_A          182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS----------ALGPAIHHLPKLEELDLRGCTALRNYPPIFGG  251 (328)
T ss_dssp             STTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC----------CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTC
T ss_pred             CCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC----------cCchhhccCCCCCEEECcCCcchhhhHHHhcC
Confidence            99999999999999999999999999999999999963          356667788888777 777655 778889999


Q ss_pred             hhhhcccccccccCCCCCCCchhhhHHHhhhcCCcccccccCCCc
Q psy2947         206 LAVQSVIASKENFFEPGLFPGPLVDYIAREYNQYHVCHYCNSAEP  250 (441)
Q Consensus       206 l~~l~~l~l~~n~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~  250 (441)
                      ++.|+.|++++|... +.+|..+..........+..|...+..|.
T Consensus       252 l~~L~~L~L~~n~~~-~~~p~~~~~l~~L~~L~L~~n~~~~~iP~  295 (328)
T 4fcg_A          252 RAPLKRLILKDCSNL-LTLPLDIHRLTQLEKLDLRGCVNLSRLPS  295 (328)
T ss_dssp             CCCCCEEECTTCTTC-CBCCTTGGGCTTCCEEECTTCTTCCCCCG
T ss_pred             CCCCCEEECCCCCch-hhcchhhhcCCCCCEEeCCCCCchhhccH
Confidence            999999999998665 56888776655556666777776666554

>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} SCOP: a.39.1.5

Probab=99.75  E-value=3.8e-18  Score=146.93  Aligned_cols=151  Identities=16%  Similarity=0.176  Sum_probs=113.5

Q ss_pred             cccchHHHHHhhhcc-ccC--CCccCHHHHHHHHHHcC----CCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCH
Q psy2947         261 FKTPYLEFRECFFLF-ARN--GTIKTLDELSVIMRSLG----MSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIP  333 (441)
Q Consensus       261 ~~~~~~~l~~~f~~~-d~~--G~i~~~~el~~~~~~~~----~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~  333 (441)
                      ++.+..+++.+|..+ |.+  |.| +.+|+..++..++    ..++..++..+.             ..+.         
T Consensus         3 s~~~~~~l~~~F~~~~D~d~dG~i-~~~E~~~~l~~~~~~~~~~~~~~~~~~l~-------------~~~~---------   59 (185)
T 2sas_A            3 NDFQKQKIKFTFDFFLDMNHDGSI-QDNDFEDMMTRYKEVNKGSLSDADYKSMQ-------------ASLE---------   59 (185)
T ss_dssp             CHHHHHHHHHHHHHHTCTTCSSEE-CHHHHHHHHHHHHHHHGGGSCHHHHHHHH-------------HHHH---------
T ss_pred             CHHHHHHHHHHHHHheeCCCCCeE-cHHHHHHHHHHHHHhhcCCCCHHHHHHHH-------------HHHH---------
Confidence            345667777777777 654  666 6777777776654    333333322221             1111         


Q ss_pred             HHHHHHHHhhcCCCCCcccHHHHHHHHHhhccC--------CCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCC
Q psy2947         334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKA--------EDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLS  405 (441)
Q Consensus       334 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~--------~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~  405 (441)
                      ..|..+|+.+|.|++|.|+++||..++......        ....+.++.+|+.+|.|++|.|+.+||+++++.+|  ++
T Consensus        60 ~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~Is~~E~~~~l~~~g--~~  137 (185)
T 2sas_A           60 DEWRDLKGRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQNYCKNFQ--LQ  137 (185)
T ss_dssp             HHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHTCCSGGGSCTTHHHHHHHHHHHHCTTSSSCCCHHHHHHHTTSSC--CC
T ss_pred             HHHHHHHHhcCCCCCCeEcHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHcCCCCCeEcHHHHHHHHHHhC--CC
Confidence            224567999999999999999999988765322        22346889999999999999999999999998887  67


Q ss_pred             HHHHHHHHHHhCCCCCCceeHHHHHHHHhcc
Q psy2947         406 SKEVDQIFREANVTMNSKVRYEDFVKIACAP  436 (441)
Q Consensus       406 ~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~~  436 (441)
                      ++++..+|+.+|.|++|.|+|+||+.++...
T Consensus       138 ~~~~~~~~~~~D~d~dG~i~~~ef~~~~~~~  168 (185)
T 2sas_A          138 CADVPAVYNVITDGGKVTFDLNRYKELYYRL  168 (185)
T ss_dssp             CSSHHHHHHHHHTTTTSCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCcCcHHHHHHHHHHH
Confidence            8899999999999999999999999988653

>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8

Probab=99.74  E-value=4e-17  Score=138.29  Aligned_cols=124  Identities=18%  Similarity=0.277  Sum_probs=112.4

Q ss_pred             HHHHHHHhCCCcccHHHHHHHHHhhcCC----CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHH
Q psy2947         302 ELKKYLAEKGGKLSFPDFLKVMHTHSKA----EDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAF  377 (441)
Q Consensus       302 ~~~~~~~~~~g~i~~~ef~~~~~~~~~~----~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f  377 (441)
                      .+..++.+++|.|+.+||..++......    ..+.+.+..+|+.+|.|++|.|+++||..++...       +.++.+|
T Consensus         6 ~F~~~D~d~~G~i~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~eF~~~~~~~-------~~~~~~F   78 (167)
T 1gjy_A            6 GYFASVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVL-------NGWRQHF   78 (167)
T ss_dssp             HHHHHHCCTTSCBCHHHHHHHHHHHTCSTTSCCCCHHHHHHHHHHHCTTCCSCBCHHHHHHHHHHH-------HHHHHHH
T ss_pred             HHHHHHcCCCCcCCHHHHHHHHHhhcccCCCCCcCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHH-------HHHHHHH
Confidence            4566778899999999999999986542    4678899999999999999999999999988764       6789999


Q ss_pred             HHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         378 KAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       378 ~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      +.+|.+++|.|+.+||+.++..+|..+++++++.+++.+  |++|.|+|+||+.++.
T Consensus        79 ~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~--d~dg~i~~~eF~~~~~  133 (167)
T 1gjy_A           79 ISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRY--STSGKITFDDYIACCV  133 (167)
T ss_dssp             HHHCTTCCSEECHHHHHHHHHTTTCCCCHHHHHHHHHHT--CBTTBEEHHHHHHHHH
T ss_pred             HHhCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHh--CcCCcCcHHHHHHHHH
Confidence            999999999999999999999999999999999999999  8899999999999874

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.74  E-value=5.2e-18  Score=162.33  Aligned_cols=179  Identities=23%  Similarity=0.238  Sum_probs=138.8

Q ss_pred             CCcCCCCCccCCC-CccCCC---CCCCCC-CcccEEeccCCCcC---c-ccC-CCCCCCEEEccCCCCCcCCcC-ccCCC
Q psy2947          36 QTACQRNCSLEVG-GICSHI---WIPQYF-SHAFLLSLSYTPIG---R-RIF-KCDTVEVLSLKSNSLTSLPPD-IGRLT  104 (441)
Q Consensus        36 ~~~C~~~c~~~~~-~~c~~~---~~~~~l-~~L~~l~l~~n~i~---~-~~~-~l~~L~~L~l~~n~l~~lp~~-~~~l~  104 (441)
                      ..+||..|.|... +.|+..   .+|..+ ..++.|+|++|.|.   . .+. .+++|+.|+|++|+|+.+++. |..++
T Consensus         9 ~~~Cp~~C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~   88 (361)
T 2xot_A            9 VVSCPANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP   88 (361)
T ss_dssp             CTTCCTTCEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             CCCCCCCCEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCC
Confidence            4569999999643 667763   344433 46899999999653   3 344 899999999999999988765 99999


Q ss_pred             CCcEEEccCCcCCCCCCch-hhhcCCCCCEEEccCCCCCcc-chhhcCCCCCCEEEccCCcCccCccccccccccccccc
Q psy2947         105 NLRVLCLTDNCLQNASIPF-TLTFCKNLTHLYLDNNLLDAL-PGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIR  182 (441)
Q Consensus       105 ~L~~L~l~~n~l~~~~~p~-~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~  182 (441)
                      +|+.|+|++|+|+  .+|. .+..+++|++|+|++|+|+.+ |..|..+++|+.|+|++|.+.....      .+...+.
T Consensus        89 ~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~------~~~~~~~  160 (361)
T 2xot_A           89 NLRYLDLSSNHLH--TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV------ELIKDGN  160 (361)
T ss_dssp             TCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG------GGTC---
T ss_pred             CCCEEECCCCcCC--cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCH------HHhcCcc
Confidence            9999999999998  5554 579999999999999999887 4789999999999999999754321      1111114


Q ss_pred             ccchhHHH-HhhcccccCC-chhhhhhh--hcccccccccCCCC
Q psy2947         183 STSTRDEV-LRKQKKLHQP-SRLQDLAV--QSVIASKENFFEPG  222 (441)
Q Consensus       183 ~l~~~~~~-l~~~~~~~~p-~~l~~l~~--l~~l~l~~n~~~~~  222 (441)
                      .++.+..+ +++|.+..+| ..+..++.  +..+++++|++.+.
T Consensus       161 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~  204 (361)
T 2xot_A          161 KLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD  204 (361)
T ss_dssp             -CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred             cCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence            56666666 8889998888 45677776  47899999999874

>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5

Probab=99.74  E-value=2e-18  Score=149.38  Aligned_cols=139  Identities=24%  Similarity=0.409  Sum_probs=107.8

Q ss_pred             ecccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCHHHHH
Q psy2947         260 TFKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVV  337 (441)
Q Consensus       260 l~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~  337 (441)
                      +++.++..++++|..+|.+  |.| +.+|+..+++.++.                                 ..+..++.
T Consensus         4 ls~~~~~~l~~~F~~~D~d~dG~I-~~~E~~~~l~~~g~---------------------------------~~~~~~~~   49 (188)
T 1s6i_A            4 LSEEEIGGLKELFKMIDTDNSGTI-TFDELKDGLKRVGS---------------------------------ELMESEIK   49 (188)
T ss_dssp             SSCTTTCSHHHHHHTTSSSSSSCE-EHHHHHHHHTTTTC---------------------------------CCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCcC-CHHHHHHHHHHcCC---------------------------------CCCHHHHH
Confidence            3445556666666666653  555 55555555554442                                 24456677


Q ss_pred             HHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Q psy2947         338 DAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREAN  417 (441)
Q Consensus       338 ~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d  417 (441)
                      .+|+.+|.|++|.|+++||..++..... ....+.++.+|+.+|.|++|.|+.+||+.++..+|  +++++++.+|+.+|
T Consensus        50 ~l~~~~D~d~dG~I~~~EF~~~~~~~~~-~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~g--~~~~~~~~~~~~~D  126 (188)
T 1s6i_A           50 DLMDAADIDKSGTIDYGEFIAATVHLNK-LEREENLVSAFSYFDKDGSGYITLDEIQQACKDFG--LDDIHIDDMIKEID  126 (188)
T ss_dssp             HHHHHTCTTCSSEECHHHHHHHHTTSSS-SCCCCSTHHHHHHTTTTCSSEEEHHHHHHTTTTTT--CCTTHHHHHHHHHC
T ss_pred             HHHHHcCCCCCCeEeHHHHHHHHHHHhc-cCHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHHC
Confidence            8888899999999999999998875532 22245688999999999999999999999998887  77889999999999


Q ss_pred             CCCCCceeHHHHHHHHhc
Q psy2947         418 VTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       418 ~d~dg~i~~~ef~~~l~~  435 (441)
                      .|++|.|+|+||+.++.+
T Consensus       127 ~d~dG~Is~~EF~~~~~~  144 (188)
T 1s6i_A          127 QDNDGQIDYGEFAAMMRK  144 (188)
T ss_dssp             SSSSSEEETTHHHHTTSC
T ss_pred             CCCCCcEeHHHHHHHHHH
Confidence            999999999999999854

>2zfd_A Calcineurin B-like protein 2; calcium binding protein, protein-protein complex, ATP-bindin kinase, nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP: a.39.1.5 PDB: 1uhn_A

Probab=99.74  E-value=4.8e-17  Score=145.01  Aligned_cols=129  Identities=19%  Similarity=0.319  Sum_probs=107.0

Q ss_pred             HHHHh--CCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCC
Q psy2947         305 KYLAE--KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADT  382 (441)
Q Consensus       305 ~~~~~--~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~  382 (441)
                      .++.+  ++|.|+.+||..++..  ........+..+|+.+|.|++|.|+++||..++..........+.++.+|+.+|.
T Consensus        56 ~~D~d~~~~G~I~~~El~~~l~~--~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~~~~~~~~~~~l~~~F~~~D~  133 (226)
T 2zfd_A           56 KISSAVIDDGLINKEEFQLALFK--TNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIHFSFQLYDL  133 (226)
T ss_dssp             HHHTSSSCSSSBCHHHHHHHHHS--CSSCCCHHHHHHHHHHCSSCSSSBCHHHHHHHHHHTSTTSCHHHHHHHHHHHHCT
T ss_pred             HhCcccCCCCeEcHHHHHHHHhc--cCcccHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHccCCCHHHHHHHHHHHhCC
Confidence            34456  7888888888888865  2233445678899999999999999999999998775444556789999999999


Q ss_pred             CCCCcccHHHHHHHHH----HhCCCCCHHHHHHH----HHHhCCCCCCceeHHHHHHHHhc
Q psy2947         383 TKSGTVPAKYLKHVLV----NWGEGLSSKEVDQI----FREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       383 ~~~G~is~~ef~~~l~----~~~~~l~~~~~~~l----~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      |++|.|+.+||+.++.    ..|.++++++++.+    |+.+|.|+||.|+|+||+.++.+
T Consensus       134 d~~G~Is~~E~~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~EF~~~~~~  194 (226)
T 2zfd_A          134 KQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDGKIDKEEWRSLVLR  194 (226)
T ss_dssp             TSSSSEEHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHCSSCSSEECHHHHHHHHHH
T ss_pred             CCCCcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHh
Confidence            9999999999999996    56888998887655    45999999999999999999864

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.74  E-value=2.5e-19  Score=188.42  Aligned_cols=208  Identities=15%  Similarity=0.098  Sum_probs=131.8

Q ss_pred             CCCCCccCeeEEeeccccCCCCCcCCCCCCCCCCCcCCCCCccCCCCccCCC-------------C----CC---CCCCc
Q psy2947           3 DPAKNNEGFQATRNKQGVGFSRRSSFKNKNSTPQTACQRNCSLEVGGICSHI-------------W----IP---QYFSH   62 (441)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~c~~~~~~~c~~~-------------~----~~---~~l~~   62 (441)
                      +.+.+.|..||++||+++. +|. .+++|+..  ..|   |+| .||.|...             +    ++   ..+++
T Consensus         7 ~~~~~~~~~all~~k~~~~-~~~-~l~~W~~~--~~~---C~w-~gv~C~~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~   78 (768)
T 3rgz_A            7 SQSLYREIHQLISFKDVLP-DKN-LLPDWSSN--KNP---CTF-DGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTG   78 (768)
T ss_dssp             -CCHHHHHHHHHHHHTTCS-CTT-SSTTCCTT--SCG---GGS-TTEEEETTEEEEEECTTSCCCEEHHHHHHHTTTCTT
T ss_pred             ccCCHHHHHHHHHHHhhCC-Ccc-cccCCCCC--CCC---cCC-cceEECCCcEEEEECCCCCcCCccCccChhHhccCc
Confidence            3445788999999999997 555 78889742  235   665 68888520             0    11   23455


Q ss_pred             ccEEeccCC---CcCcccCCCCCCCEEEccCCCCC-cCCc--CccCCCCCcEEEccCCcCCCCCCchhh-hcCCCCCEEE
Q psy2947          63 AFLLSLSYT---PIGRRIFKCDTVEVLSLKSNSLT-SLPP--DIGRLTNLRVLCLTDNCLQNASIPFTL-TFCKNLTHLY  135 (441)
Q Consensus        63 L~~l~l~~n---~i~~~~~~l~~L~~L~l~~n~l~-~lp~--~~~~l~~L~~L~l~~n~l~~~~~p~~~-~~l~~L~~L~  135 (441)
                      |+.++++.|   .+|..+..+++|++|+|++|.++ .+|.  .++.+++|++|++++|.+. +.+|..+ ..+++|++|+
T Consensus        79 L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~~~l~~L~~L~  157 (768)
T 3rgz_A           79 LESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD-FPGKVSGGLKLNSLEVLD  157 (768)
T ss_dssp             CCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEE-CCSSCCSCCCCTTCSEEE
T ss_pred             ccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccC-CcCCHHHhccCCCCCEEE
Confidence            566666665   23456777778888888888777 5666  6777788888888888776 5666655 6777778888


Q ss_pred             ccCCCCCccc-hh---hcCCCCCCEEEccCCcCccCcccc-------------cccccccccccccchhHHH-Hhhcccc
Q psy2947         136 LDNNLLDALP-GF---LLSMPQLDTVYRHGNHNYFKSTFM-------------WYHSDIHARIRSTSTRDEV-LRKQKKL  197 (441)
Q Consensus       136 l~~n~l~~lp-~~---~~~l~~L~~L~l~~N~~~~~~~~~-------------~~~~~~p~~l~~l~~~~~~-l~~~~~~  197 (441)
                      +++|.++..+ ..   +.++++|++|++++|.+.....+.             .+.+.+|. +..++.+..+ +.+|.+.
T Consensus       158 Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~  236 (768)
T 3rgz_A          158 LSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLS  236 (768)
T ss_dssp             CCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCC
T ss_pred             CCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCC
Confidence            8777775443 33   566777777777777643211110             01222333 5555555555 5666653


Q ss_pred             -cCCchhhhhhhhcccccccccCC
Q psy2947         198 -HQPSRLQDLAVQSVIASKENFFE  220 (441)
Q Consensus       198 -~~p~~l~~l~~l~~l~l~~n~~~  220 (441)
                       .+|..+..++.|+.|+++.|.+.
T Consensus       237 ~~~~~~l~~l~~L~~L~Ls~n~l~  260 (768)
T 3rgz_A          237 GDFSRAISTCTELKLLNISSNQFV  260 (768)
T ss_dssp             SCHHHHTTTCSSCCEEECCSSCCE
T ss_pred             CcccHHHhcCCCCCEEECCCCccc
Confidence             44566667777777777766553

>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB: 2scp_A

Probab=99.73  E-value=1.1e-17  Score=142.47  Aligned_cols=144  Identities=15%  Similarity=0.177  Sum_probs=109.1

Q ss_pred             ccchHHHHHhhhccccC--CCccCHHHHHHHHHHcC----CCcCHHH-HHHHHHhCCCcccHHHHHHHHHhhcCCCCCHH
Q psy2947         262 KTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLG----MSPTIAE-LKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPK  334 (441)
Q Consensus       262 ~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~----~~~~~~~-~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~  334 (441)
                      +.++.+++++|..+|.+  |.| +.+|+..+++.++    ..++..+ +..+..                         .
T Consensus         2 ~~~~~~l~~~F~~~D~d~~G~i-~~~El~~~l~~~~~~~g~~~~~~~~~~~~~~-------------------------~   55 (174)
T 1q80_A            2 DLWVQKMKTYFNRIDFDKDGAI-TRMDFESMAERFAKESEMKAEHAKVLMDSLT-------------------------G   55 (174)
T ss_dssp             HHHHHHHHHHHHHHCTTCSSEE-SHHHHHHHHHHHHHHSSCCTTHHHHHHHHHH-------------------------H
T ss_pred             HHHHHHHHHHHHhcCCCCCCcE-eHHHHHHHHHHHHHHhCCCCCcHHHHHHHHH-------------------------H
Confidence            34566677777777764  666 6777777766655    4444433 222221                         2


Q ss_pred             HHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCC----ChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHH
Q psy2947         335 EVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAED----IPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVD  410 (441)
Q Consensus       335 ~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~----~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~  410 (441)
                      .+..+|+.+|  ++|.|+++||..++........    ..+.++.+|+.+|+|++|.|+.+||++++..+|  +++++++
T Consensus        56 ~~~~l~~~~D--~~g~i~~~EF~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~g--~~~~~~~  131 (174)
T 1q80_A           56 VWDNFLTAVA--GGKGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGMLG--LDKTMAP  131 (174)
T ss_dssp             HHHHTGGGTT--TTSCEEHHHHHHHHHHHTTSTTCHHHHHTHHHHHHHHHCTTSSSSBCHHHHHHHHHHHT--CCGGGHH
T ss_pred             HHHHHHHhcC--CCCeEcHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcC--CCHHHHH
Confidence            3456788888  8999999999998877643211    135788999999999999999999999999997  8889999


Q ss_pred             HHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         411 QIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       411 ~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      .+|+.+|.|++|.|+|+||+.++.+
T Consensus       132 ~~~~~~D~d~dg~i~~~ef~~~~~~  156 (174)
T 1q80_A          132 ASFDAIDTNNDGLLSLEEFVIAGSD  156 (174)
T ss_dssp             HHHHHHCTTCSSSBCHHHHHHHHHH
T ss_pred             HHHHHhCCCCCceEeHHHHHHHHHH
Confidence            9999999999999999999998854

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.73  E-value=8.1e-18  Score=155.59  Aligned_cols=173  Identities=21%  Similarity=0.267  Sum_probs=132.2

Q ss_pred             cCCCCCccCCC----CccCCCC---CCC-CCCcccEEeccCCCcC----cccCCCCCCCEEEccCCCCCcC-CcCccCCC
Q psy2947          38 ACQRNCSLEVG----GICSHIW---IPQ-YFSHAFLLSLSYTPIG----RRIFKCDTVEVLSLKSNSLTSL-PPDIGRLT  104 (441)
Q Consensus        38 ~C~~~c~~~~~----~~c~~~~---~~~-~l~~L~~l~l~~n~i~----~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~  104 (441)
                      +||..|.|...    +.|+..+   +|. ..++|+.|++++|.+.    ..+..+++|++|++++|.++.+ |..|..++
T Consensus         1 ~CP~~C~C~~~~~~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~   80 (285)
T 1ozn_A            1 PCPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA   80 (285)
T ss_dssp             CCCTTCEEECSSSCEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             CcCCCceECCCCCeEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCcc
Confidence            59999999542    5687643   343 3468999999999553    4577889999999999999966 56699999


Q ss_pred             CCcEEEccCCc-CCCCCCchhhhcCCCCCEEEccCCCCCcc-chhhcCCCCCCEEEccCCcCccCccccccccccccccc
Q psy2947         105 NLRVLCLTDNC-LQNASIPFTLTFCKNLTHLYLDNNLLDAL-PGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIR  182 (441)
Q Consensus       105 ~L~~L~l~~n~-l~~~~~p~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~  182 (441)
                      +|++|++++|. +. ...|..+..+++|++|++++|+++.+ |..+..+++|++|++++|.+....         +..+.
T Consensus        81 ~L~~L~l~~n~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------~~~~~  150 (285)
T 1ozn_A           81 LLEQLDLSDNAQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP---------DDTFR  150 (285)
T ss_dssp             TCCEEECCSCTTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC---------TTTTT
T ss_pred             CCCEEeCCCCCCcc-ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccC---------HhHhc
Confidence            99999999997 76 33366788999999999999999877 467888999999999999864322         23455


Q ss_pred             ccchhHHH-HhhcccccCCc-hhhhhhhhcccccccccCC
Q psy2947         183 STSTRDEV-LRKQKKLHQPS-RLQDLAVQSVIASKENFFE  220 (441)
Q Consensus       183 ~l~~~~~~-l~~~~~~~~p~-~l~~l~~l~~l~l~~n~~~  220 (441)
                      .++.+..+ +.+|.+..+|. .+..++.|+.+++++|.+.
T Consensus       151 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  190 (285)
T 1ozn_A          151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA  190 (285)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             cCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence            56666666 77777766664 4777888888888887654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.73  E-value=4.1e-17  Score=141.56  Aligned_cols=109  Identities=27%  Similarity=0.325  Sum_probs=56.6

Q ss_pred             cCCCCCccCCC-CccCCCCCCCCCCcccEEeccCCCcCcccCCCCCCCEEEccCCCCCcCCcC--ccCCCCCcEEEccCC
Q psy2947          38 ACQRNCSLEVG-GICSHIWIPQYFSHAFLLSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPD--IGRLTNLRVLCLTDN  114 (441)
Q Consensus        38 ~C~~~c~~~~~-~~c~~~~~~~~l~~L~~l~l~~n~i~~~~~~l~~L~~L~l~~n~l~~lp~~--~~~l~~L~~L~l~~n  114 (441)
                      +||..|.|... +.|+..++.              .||..+.  .+|+.|++++|+|+.++..  |..+++|++|++++|
T Consensus         1 ~CP~~C~C~~~~l~~s~~~l~--------------~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N   64 (192)
T 1w8a_A            1 DCPAMCHCEGTTVDCTGRGLK--------------EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN   64 (192)
T ss_dssp             CCCTTSEEETTEEECTTSCCS--------------SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS
T ss_pred             CcCCCCEECCCEEEcCCCCcC--------------cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCC
Confidence            59999999532 334432110              2333332  2555555555555544432  555555555555555


Q ss_pred             cCCCCCCchhhhcCCCCCEEEccCCCCCccc-hhhcCCCCCCEEEccCCc
Q psy2947         115 CLQNASIPFTLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGNH  163 (441)
Q Consensus       115 ~l~~~~~p~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~N~  163 (441)
                      .|+ +..|..+..+++|++|+|++|+|+.++ ..|.++++|++|+|++|+
T Consensus        65 ~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  113 (192)
T 1w8a_A           65 QLT-GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ  113 (192)
T ss_dssp             CCC-CBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSC
T ss_pred             CCC-CcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence            555 333445555555555555555555444 334555555555555555

>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand, phosphoprotein, calcium binding; 2.65A {Homo sapiens}

Probab=99.73  E-value=1.8e-17  Score=145.16  Aligned_cols=125  Identities=16%  Similarity=0.210  Sum_probs=96.3

Q ss_pred             HhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCc
Q psy2947         308 AEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGT  387 (441)
Q Consensus       308 ~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~  387 (441)
                      .+++|.|+.+||..++... +...+.+++..+|+.+|.|++|.|+++||..++..... ....+.++.+|+.+|.|++|.
T Consensus        48 ~d~~G~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~D~d~dg~i~~~ef~~~~~~~~~-~~~~~~~~~~F~~~D~d~~G~  125 (204)
T 3e3r_A           48 RDGSRSLDADEFRQGLAKL-GLVLDQAEAEGVCRKWDRNGSGTLDLEEFLRALRPPMS-QAREAVIAAAFAKLDRSGDGV  125 (204)
T ss_dssp             TTCCSSBCHHHHHHHHHTT-TCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHTSCCCC-HHHHHHHHHHHHHHCTTCSSE
T ss_pred             cCCCCCcCHHHHHHHHHHc-CCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHhhcC-chHHHHHHHHHHHhCcCCCCe
Confidence            5677777777777777655 23356777888888888888888888888887764421 122456788888888888899


Q ss_pred             ccHHHHHHHHH-------HhCCCCCHHHHHHHHHHhCC-CCCCceeHHHHHHHHh
Q psy2947         388 VPAKYLKHVLV-------NWGEGLSSKEVDQIFREANV-TMNSKVRYEDFVKIAC  434 (441)
Q Consensus       388 is~~ef~~~l~-------~~~~~l~~~~~~~l~~~~d~-d~dg~i~~~ef~~~l~  434 (441)
                      |+.+||++++.       ..|...++++++.+|+.+|. |+||.|+|+||+.++.
T Consensus       126 I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~dg~Is~~EF~~~~~  180 (204)
T 3e3r_A          126 VTVDDLRGVYSGRAHPKVRSGEWTEDEVLRRFLDNFDSSEKDGQVTLAEFQDYYS  180 (204)
T ss_dssp             ECHHHHHHHCCCTTCHHHHTTSSCHHHHHHHHHHHHSCSSCCSCEEHHHHHHHHH
T ss_pred             EeHHHHHHHHccccCCccccCCCChHHHHHHHHHHhhccCCCCcCcHHHHHHHHH
Confidence            99998888887       34566777888888888887 8888899998888875

>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*

Probab=99.73  E-value=1.9e-17  Score=142.55  Aligned_cols=100  Identities=21%  Similarity=0.323  Sum_probs=86.8

Q ss_pred             HHHHHhhcCCCCCc-ccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCC-----CCCHHHHH
Q psy2947         337 VDAFKAADTTKSGK-LSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGE-----GLSSKEVD  410 (441)
Q Consensus       337 ~~~f~~~D~d~~g~-i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~-----~l~~~~~~  410 (441)
                      ..+|+.+|.|++|. |+++||..++..........+.++.+|+.+|.|++|.|+.+||+.++..++.     .+++++++
T Consensus        63 ~~l~~~~D~d~~G~~I~~~EF~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~  142 (183)
T 1dgu_A           63 ERICRVFSTSPAKDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMK  142 (183)
T ss_dssp             HHHHHHHSCSSSSCCCCHHHHHHHHHHHSTTCCHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHHSSSCCCHHHHHHHH
T ss_pred             HHHHHHhCCCCCCCEecHHHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHhcccccCCCCHHHHH
Confidence            35677889999999 9999999998877544444568999999999999999999999999999876     67888887


Q ss_pred             H----HHHHhCCCCCCceeHHHHHHHHhcc
Q psy2947         411 Q----IFREANVTMNSKVRYEDFVKIACAP  436 (441)
Q Consensus       411 ~----l~~~~d~d~dg~i~~~ef~~~l~~~  436 (441)
                      .    +|+.+|.|++|.|+|+||+.++.+.
T Consensus       143 ~~~~~~~~~~D~d~dG~I~~~EF~~~~~~~  172 (183)
T 1dgu_A          143 QLIDNILEESDIDRDGTINLSEFQHVISRS  172 (183)
T ss_dssp             HHHHHHHHHHCTTSSSEEEHHHHHHHHCSS
T ss_pred             HHHHHHHHHhCCCCCCeEcHHHHHHHHHhC
Confidence            5    9999999999999999999998653

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.73  E-value=5.3e-17  Score=142.79  Aligned_cols=124  Identities=27%  Similarity=0.343  Sum_probs=99.5

Q ss_pred             CCCCCcc-CCCCccCCCCC---CC-CCCcccEEeccCCCc---Cc-ccCCCCCCCEEEccCCCCCcCCcC-ccCCCCCcE
Q psy2947          39 CQRNCSL-EVGGICSHIWI---PQ-YFSHAFLLSLSYTPI---GR-RIFKCDTVEVLSLKSNSLTSLPPD-IGRLTNLRV  108 (441)
Q Consensus        39 C~~~c~~-~~~~~c~~~~~---~~-~l~~L~~l~l~~n~i---~~-~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~  108 (441)
                      ||..|.| |.++.|...+.   |. ..++|+.|++++|.+   +. .+..+++|++|++++|+++.+|.. |..+++|++
T Consensus         1 Cp~~C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~   80 (208)
T 2o6s_A            1 CPSRCSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTY   80 (208)
T ss_dssp             CCTTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CcCCCEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCE
Confidence            8889998 45678876432   32 245789999999844   33 356789999999999999988776 788999999


Q ss_pred             EEccCCcCCCCCCch-hhhcCCCCCEEEccCCCCCccch-hhcCCCCCCEEEccCCcC
Q psy2947         109 LCLTDNCLQNASIPF-TLTFCKNLTHLYLDNNLLDALPG-FLLSMPQLDTVYRHGNHN  164 (441)
Q Consensus       109 L~l~~n~l~~~~~p~-~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~l~~N~~  164 (441)
                      |++++|.++  .+|. .+..+++|++|++++|+|+.+|. .+..+++|+.|++++|.+
T Consensus        81 L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  136 (208)
T 2o6s_A           81 LNLSTNQLQ--SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL  136 (208)
T ss_dssp             EECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCC--ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcc
Confidence            999999998  5554 46889999999999999988874 578889999999999985

>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A

Probab=99.73  E-value=1.6e-16  Score=131.28  Aligned_cols=124  Identities=15%  Similarity=0.280  Sum_probs=106.9

Q ss_pred             HHHHHhC-CCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCC
Q psy2947         304 KKYLAEK-GGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADT  382 (441)
Q Consensus       304 ~~~~~~~-~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~  382 (441)
                      ..++.++ +|.|+.+||..++.... ...+...+..+|+.+|.+    |+++||..++..........+.++.+|+.+|+
T Consensus        21 ~~~D~d~~~G~i~~~el~~~l~~~g-~~~~~~~~~~l~~~~d~~----i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~   95 (146)
T 2qac_A           21 IYFNEKSSGGKISIDNASYNARKLG-LAPSSIDEKKIKELYGDN----LTYEQYLEYLSICVHDKDNVEELIKMFAHFDN   95 (146)
T ss_dssp             HHHHHHCBTTBEEHHHHHHHHHHTT-CCCCHHHHHHHHHHHCSE----ECHHHHHHHHHHTCCTTCCHHHHHHHHHTTCT
T ss_pred             HHhCccCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCC----CCHHHHHHHHHHHhcCcchHHHHHHHHHHhCC
Confidence            3444677 88888888888877653 346677888899999987    99999999988765555557889999999999


Q ss_pred             CCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         383 TKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       383 ~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      |++|.|+.+||++++..+|.++++++++.+++.+  |++|.|+|+||+.+|.
T Consensus        96 d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~--d~dg~i~~~eF~~~l~  145 (146)
T 2qac_A           96 NCTGYLTKSQMKNILTTWGDALTDQEAIDALNAF--SSEDNIDYKLFCEDIL  145 (146)
T ss_dssp             TCSSEEEHHHHHHHHHHSSSCCCHHHHHHHHHHH--CSSSEEEHHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHc--CCCCcCcHHHHHHHHh
Confidence            9999999999999999999999999999999999  8999999999999885

>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A

Probab=99.72  E-value=1.2e-16  Score=139.28  Aligned_cols=123  Identities=20%  Similarity=0.287  Sum_probs=112.2

Q ss_pred             HHHHHHhCCCcccHHHHHHHHHhhcC----CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHH
Q psy2947         303 LKKYLAEKGGKLSFPDFLKVMHTHSK----AEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFK  378 (441)
Q Consensus       303 ~~~~~~~~~g~i~~~ef~~~~~~~~~----~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~  378 (441)
                      +..++.+++|.|+.+||..++.....    ...+.+++..+|+.+|.|++|.|+++||..++...       +.++.+|+
T Consensus        38 F~~~D~d~~G~i~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~i~~~eF~~~~~~~-------~~~~~~F~  110 (198)
T 1juo_A           38 YFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVL-------NGWRQHFI  110 (198)
T ss_dssp             HHHHHHTTTTEECHHHHHHHHHHHTTTCSSCCCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHH-------HHHHHHHH
T ss_pred             HHHHhCCCCCcCCHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHhCCCCCCeECHHHHHHHHHHH-------HHHHHHHH
Confidence            66667899999999999999998754    24678899999999999999999999999988764       67899999


Q ss_pred             HhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         379 AADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       379 ~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      .+|.|++|.|+.+||+.+++.+|..+++++++.+++.+  |++|.|+|+||+.++.
T Consensus       111 ~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~l~~~~--d~dg~i~~~eF~~~~~  164 (198)
T 1juo_A          111 SFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRY--STNGKITFDDYIACCV  164 (198)
T ss_dssp             TTCTTCCSEECHHHHHHHHHHTTCCCCHHHHHHHHHHT--CSSSSEEHHHHHHHHH
T ss_pred             HhCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHh--CCCCeEcHHHHHHHHH
Confidence            99999999999999999999999999999999999999  8899999999999874

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.72  E-value=3e-17  Score=152.00  Aligned_cols=165  Identities=21%  Similarity=0.186  Sum_probs=107.7

Q ss_pred             CCCcccEEeccCCCcCc--ccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCc-hhhhcCCCCCEEE
Q psy2947          59 YFSHAFLLSLSYTPIGR--RIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIP-FTLTFCKNLTHLY  135 (441)
Q Consensus        59 ~l~~L~~l~l~~n~i~~--~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p-~~~~~l~~L~~L~  135 (441)
                      .+++|+.|++++|.|..  ....+++|++|+|++|+++.+|..+..+++|+.|++++|+++  .+| ..+..+++|++|+
T Consensus        53 ~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~--~l~~~~~~~l~~L~~L~  130 (290)
T 1p9a_G           53 PYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT--SLPLGALRGLGELQELY  130 (290)
T ss_dssp             TCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCC--CCCSSTTTTCTTCCEEE
T ss_pred             cCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCc--ccCHHHHcCCCCCCEEE
Confidence            35666667776664431  125566777777777777777776777777777777777776  444 4567777777777


Q ss_pred             ccCCCCCccc-hhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCchhhhhhhhcccc
Q psy2947         136 LDNNLLDALP-GFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSRLQDLAVQSVIA  213 (441)
Q Consensus       136 l~~n~l~~lp-~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~l~~l~~l~~l~  213 (441)
                      |++|+|+.+| ..|..+++|+.|++++|++....         +..+..++.+..+ +++|.+..+|..+..+..|+.++
T Consensus       131 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~---------~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~  201 (290)
T 1p9a_G          131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP---------AGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAF  201 (290)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC---------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEE
T ss_pred             CCCCCCCccChhhcccccCCCEEECCCCcCCccC---------HHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEE
Confidence            7777777666 44566777777777777753221         1234555666666 77777778887777777888888


Q ss_pred             cccccCCCCCCCchhhhHHHh
Q psy2947         214 SKENFFEPGLFPGPLVDYIAR  234 (441)
Q Consensus       214 l~~n~~~~~~~p~~~~~~l~~  234 (441)
                      +++|++.+.+--..+..|+..
T Consensus       202 L~~Np~~C~c~~~~l~~wl~~  222 (290)
T 1p9a_G          202 LHGNPWLCNCEILYFRRWLQD  222 (290)
T ss_dssp             CCSCCBCCSGGGHHHHHHHHH
T ss_pred             eCCCCccCcCccHHHHHHHHh
Confidence            888888765422234455543

>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase activating protein, GCAP, GCAP3, GCAP-3, lyase activator; 3.00A {Homo sapiens}

Probab=99.72  E-value=4.2e-17  Score=143.75  Aligned_cols=129  Identities=16%  Similarity=0.252  Sum_probs=54.6

Q ss_pred             HHHHhhhcccc---CCCccCHHHHHHHHHHcCCCcCH-HHHHHHH----HhCCCcccHHHHHHHHHhhcCCCCCHHHHHH
Q psy2947         267 EFRECFFLFAR---NGTIKTLDELSVIMRSLGMSPTI-AELKKYL----AEKGGKLSFPDFLKVMHTHSKAEDIPKEVVD  338 (441)
Q Consensus       267 ~l~~~f~~~d~---~G~i~~~~el~~~~~~~~~~~~~-~~~~~~~----~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~  338 (441)
                      +++++|..+|.   +|.| +.+|+..+++.++..+.. .++..++    .+++|.|+++||..++..... ....+.++.
T Consensus        20 ei~~~f~~fD~~~~~G~i-s~~El~~~l~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~~~~-~~~~~~l~~   97 (211)
T 2ggz_A           20 ETHVWYRTFMMEYPSGLQ-TLHEFKTLLGLQGLNQKANKHIDQVYNTFDTNKDGFVDFLEFIAAVNLIMQ-EKMEQKLKW   97 (211)
T ss_dssp             ----CCCSHHHHCTTSEE-EHHHHHHHTTCCSCCHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHSC-SSHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCcC-CHHHHHHHHHHhCCCcchHHHHHHHHHHHcCCCCCeEeHHHHHHHHHHhcc-CchHHHHHH
Confidence            34445555542   3455 555555555554433221 1122222    234445555555544443321 123344444


Q ss_pred             HHHhhcCCCCCcccHHHHHHHHHhhcc----CCCC-hHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy2947         339 AFKAADTTKSGKLSFPDFLKVMHTHSK----AEDI-PKEVVDAFKAADTTKSGTVPAKYLKHVL  397 (441)
Q Consensus       339 ~f~~~D~d~~g~i~~~ef~~~~~~~~~----~~~~-~~~~~~~f~~~D~~~~G~is~~ef~~~l  397 (441)
                      +|+.+|.|++|.|+++||..++.....    .... .+.++.+|+.+|.|++|.|+++||++++
T Consensus        98 ~F~~~D~d~~G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~  161 (211)
T 2ggz_A           98 YFKLYDADGNGSIDKNELLDMFMAVQALNGQQTLSPEEFINLVFHKIDINNDGELTLEEFINGM  161 (211)
T ss_dssp             HHHHHCTTCSSSBCHHHHHHHHHHHTTSSCCCSCTHHHHHHHHHHHHCTTCSSSBCHHHHHHHH
T ss_pred             HHHHhcCCCCCcCcHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHhCCCCCCCCcHHHHHHHH
Confidence            555555555555555555544443321    1111 1234444555555555555555555444

>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal binding protein; NMR {Entamoeba histolytica} SCOP: a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A

Probab=99.72  E-value=1.1e-17  Score=135.85  Aligned_cols=123  Identities=15%  Similarity=0.207  Sum_probs=102.9

Q ss_pred             HHHhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhc--cCCCChHHHHHHHHHhCCC
Q psy2947         306 YLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHS--KAEDIPKEVVDAFKAADTT  383 (441)
Q Consensus       306 ~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~--~~~~~~~~~~~~f~~~D~~  383 (441)
                      ++.+++|.|+++||..++.... ...+.+.+..+|+.+|.+++|.|+++||..++....  ......+.++.+|+.+|.+
T Consensus         9 ~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~D~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~d   87 (134)
T 1jfj_A            9 IDVNGDGAVSYEEVKAFVSKKR-AIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYGSIQGQDLSDDKIGLKVLYKLMDVD   87 (134)
T ss_dssp             HCTTCSSEEEHHHHHHHHHTTC-CSSHHHHHHHHHHHHCSSCCSEEEHHHHHHHTTCSSCCSSHHHHHHHHHHHHHHCCS
T ss_pred             HCCCCCCcCCHHHHHHHHHHcC-CCCCHHHHHHHHHHHcCCCCCeEcHHHHHHHHHHhcccccCCCHHHHHHHHHHHCCC
Confidence            3367889999999999887653 345678899999999999999999999999885221  1112245689999999999


Q ss_pred             CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy2947         384 KSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA  433 (441)
Q Consensus       384 ~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l  433 (441)
                      ++|.|+.+||+.++...|.++    +..+|+.+|.|++|.|+|+||++++
T Consensus        88 ~~G~i~~~e~~~~l~~~~~~~----~~~~~~~~D~~~dg~i~~~ef~~~l  133 (134)
T 1jfj_A           88 GDGKLTKEEVTSFFKKHGIEK----VAEQVMKADANGDGYITLEEFLEFS  133 (134)
T ss_dssp             SSSEEEHHHHHHHHTTTTCHH----HHHHHHHHHCSSSSEEEHHHHHHHH
T ss_pred             CCCccCHHHHHHHHHHhCHHH----HHHHHHHhCCCCCCcEeHHHHHHHh
Confidence            999999999999999877443    8899999999999999999999886

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.72  E-value=3.3e-18  Score=159.88  Aligned_cols=124  Identities=23%  Similarity=0.217  Sum_probs=92.6

Q ss_pred             CCCCCccC-CCCccCCCC---CCCC-CCcccEEeccCCC---cCcc-cCCCCCCCEEEccCCCCCcC---CcCccCCCCC
Q psy2947          39 CQRNCSLE-VGGICSHIW---IPQY-FSHAFLLSLSYTP---IGRR-IFKCDTVEVLSLKSNSLTSL---PPDIGRLTNL  106 (441)
Q Consensus        39 C~~~c~~~-~~~~c~~~~---~~~~-l~~L~~l~l~~n~---i~~~-~~~l~~L~~L~l~~n~l~~l---p~~~~~l~~L  106 (441)
                      ||..|.|. .++.|...+   +|.. .++|+.|++++|.   +|.. +..+++|++|+|++|.++.+   |..+..+++|
T Consensus         1 CP~~C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L   80 (306)
T 2z66_A            1 CPSRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSL   80 (306)
T ss_dssp             CCTTCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCC
T ss_pred             CcCCCeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccccccccc
Confidence            88888884 457787643   3332 3588999999884   4543 56788899999999888754   4556678888


Q ss_pred             cEEEccCCcCCCCCCchhhhcCCCCCEEEccCCCCCccc--hhhcCCCCCCEEEccCCcC
Q psy2947         107 RVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALP--GFLLSMPQLDTVYRHGNHN  164 (441)
Q Consensus       107 ~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~lp--~~~~~l~~L~~L~l~~N~~  164 (441)
                      ++|++++|.+.  .+|..+..+++|++|++++|+++.++  ..+..+++|++|++++|.+
T Consensus        81 ~~L~Ls~n~i~--~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l  138 (306)
T 2z66_A           81 KYLDLSFNGVI--TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT  138 (306)
T ss_dssp             CEEECCSCSEE--EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCC
T ss_pred             CEEECCCCccc--cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcC
Confidence            88888888887  67777777888888888888887765  3677778888888888774

>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana}

Probab=99.72  E-value=1.8e-17  Score=140.20  Aligned_cols=125  Identities=20%  Similarity=0.412  Sum_probs=97.0

Q ss_pred             HhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCc
Q psy2947         308 AEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGT  387 (441)
Q Consensus       308 ~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~  387 (441)
                      .+++|.|+.+||..++... ....+...+..+|+.+|.+++|.|+++||..++..... ....+.++.+|+.+|.+++|.
T Consensus        38 ~~~~G~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~-~~~~~~~~~~F~~~D~d~~G~  115 (166)
T 2aao_A           38 ADKSGQITFEELKAGLKRV-GANLKESEILDLMQAADVDNSGTIDYKEFIAATLHLNK-IEREDHLFAAFTYFDKDGSGY  115 (166)
T ss_dssp             TTCCSSBCHHHHHHHGGGG-TCCCCHHHHHHHHHHHCTTCCSSBCHHHHHHHHTTCHH-HHTTHHHHHHHHHHCTTCSSS
T ss_pred             CCCCCeEeHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHHhh-cccHHHHHHHHHHhCCCCCCc
Confidence            4677777777777777664 33456778899999999999999999999998864421 122467899999999999999


Q ss_pred             ccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhcc
Q psy2947         388 VPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAP  436 (441)
Q Consensus       388 is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~~  436 (441)
                      |+.+||+.++..+|  +++++++.+++.+|.|++|.|+|+||+.++.+.
T Consensus       116 i~~~e~~~~l~~~~--~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~~~~  162 (166)
T 2aao_A          116 ITPDELQQACEEFG--VEDVRIEELMRDVDQDNDGRIDYNEFVAMMQKG  162 (166)
T ss_dssp             BCHHHHHHHTCC----------CCHHHHHCTTCSSSBCHHHHHHHHC--
T ss_pred             CcHHHHHHHHHHcC--CCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHhc
Confidence            99999999998876  678889999999999999999999999998653

>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=99.71  E-value=7.2e-17  Score=132.60  Aligned_cols=133  Identities=21%  Similarity=0.381  Sum_probs=118.1

Q ss_pred             ccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHH----hCCCcccHHHHHHHHHhhcCCCCCHHH
Q psy2947         262 KTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLA----EKGGKLSFPDFLKVMHTHSKAEDIPKE  335 (441)
Q Consensus       262 ~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~~~~~~~~~  335 (441)
                      ++++.+++++|..+|.+  |.| +..++..+++.++..++..++..++.    +++|.|+++||..++..........+.
T Consensus         2 ~~~~~~l~~~F~~~D~d~~G~i-~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~   80 (142)
T 2bl0_C            2 DDQVSEFKEAFELFDSERTGFI-TKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGKIQFPEFLSMMGRRMKQTTSEDI   80 (142)
T ss_dssp             CHHHHHHHHHHHHHCTTCSSEE-EHHHHHHHHHHHTCCCCHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHHTTCCCHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCCcC-cHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCeeeHHHHHHHHHHHhcCCChHHH
Confidence            56788999999999976  888 89999999999999999888888775    588999999999999876555667889


Q ss_pred             HHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy2947         336 VVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVL  397 (441)
Q Consensus       336 ~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l  397 (441)
                      +..+|+.+|.|++|.|+.+||+.++... +.....+++..+|+.+| +++|.|+++||.++|
T Consensus        81 ~~~~F~~~D~d~~G~i~~~el~~~l~~~-g~~~~~~~~~~~~~~~d-~~dg~i~~~eF~~~~  140 (142)
T 2bl0_C           81 LRQAFRTFDPEGTGYIPKAALQDALLNL-GDRLKPHEFAEFLGITE-TEKGQIRYDNFINTM  140 (142)
T ss_dssp             HHHHHHHTCCSSCSCEEHHHHHHHHHHS-SSCCCHHHHHHHHHHHC-CSSSEECSHHHHTTT
T ss_pred             HHHHHHHHCCCCCCcCcHHHHHHHHHHc-CCCCCHHHHHHHHHHhC-CCCCcEeHHHHHHHH
Confidence            9999999999999999999999999876 34556788999999999 999999999998876

>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A

Probab=99.71  E-value=5.3e-17  Score=137.65  Aligned_cols=140  Identities=27%  Similarity=0.453  Sum_probs=121.5

Q ss_pred             ceecccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHH----hCCCcccHHHHHHHHHhhcCCCC
Q psy2947         258 VFTFKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLA----EKGGKLSFPDFLKVMHTHSKAED  331 (441)
Q Consensus       258 ~~l~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~~~~~  331 (441)
                      ..+++.+...+++.|..+|.+  |.| +..|+..+++.++..++..++..++.    +++|.|+++||..++........
T Consensus        20 ~~l~~~~~~~l~~~F~~~D~d~~G~i-~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~   98 (169)
T 3qrx_A           20 VGLTEEQKQEIREAFDLFDTDGSGTI-DAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTIDFEEFLTMMTAKMGERD   98 (169)
T ss_dssp             CCCCHHHHHHHHHHHHHHCTTCCSEE-CHHHHHHHHHHTSCCCCHHHHHHHHHHHCSSSSSSEEHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCCCCCCcC-cHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHhcccC
Confidence            346678899999999999986  888 89999999999999999998888775    68899999999999886543333


Q ss_pred             CHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         332 IPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       332 ~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      ..+.+..+|+.+|.|++|.|+.+||..++... ......+++..+|+.+|.|++|.|+++||..+++.
T Consensus        99 ~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~-g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~  165 (169)
T 3qrx_A           99 SREEILKAFRLFDDDNSGTITIKDLRRVAKEL-GENLTEEELQEMIAEADRNDDNEIDEDEFIRIMKK  165 (169)
T ss_dssp             HHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHT-TCCCCHHHHHHHHHHHCCSSSSCBCHHHHHHHHC-
T ss_pred             cHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHc-CCCCCHHHHHHHHHHhCCCCCCCEeHHHHHHHHHh
Confidence            45789999999999999999999999999877 35566789999999999999999999999999865

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.71  E-value=6.2e-17  Score=148.40  Aligned_cols=122  Identities=30%  Similarity=0.384  Sum_probs=86.8

Q ss_pred             CccCC---CCccCCC---CCCCCC-CcccEEeccCCCc---C-cccCCCCCCCEEEccCCCCCcCCcC-ccCCCCCcEEE
Q psy2947          43 CSLEV---GGICSHI---WIPQYF-SHAFLLSLSYTPI---G-RRIFKCDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLC  110 (441)
Q Consensus        43 c~~~~---~~~c~~~---~~~~~l-~~L~~l~l~~n~i---~-~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~  110 (441)
                      |+|..   .+.|+..   .+|..+ ++|+.|++++|.+   + ..+..+++|++|+|++|.++.+|.. |..+++|++|+
T Consensus        12 C~c~~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~   91 (270)
T 2o6q_A           12 CSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW   91 (270)
T ss_dssp             BEEETTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred             CEeCCCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence            66643   2556642   234322 4688888888843   3 3566788888888888888877776 57788888888


Q ss_pred             ccCCcCCCCCCch-hhhcCCCCCEEEccCCCCCccc-hhhcCCCCCCEEEccCCcCcc
Q psy2947         111 LTDNCLQNASIPF-TLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGNHNYF  166 (441)
Q Consensus       111 l~~n~l~~~~~p~-~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~N~~~~  166 (441)
                      +++|.++  .+|. .+..+++|++|++++|+++.+| ..|..+++|++|++++|.+..
T Consensus        92 l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  147 (270)
T 2o6q_A           92 VTDNKLQ--ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS  147 (270)
T ss_dssp             CCSSCCC--CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CCCCcCC--cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc
Confidence            8888887  4554 4577888888888888887776 456777888888888887543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.70  E-value=1.7e-16  Score=141.76  Aligned_cols=145  Identities=24%  Similarity=0.228  Sum_probs=110.5

Q ss_pred             CccCCCCccCCCC---CCC-CCCcccEEeccCCCc----CcccCCCCCCCEEEccCCCCCcCCcC-ccCCCCCcEEEccC
Q psy2947          43 CSLEVGGICSHIW---IPQ-YFSHAFLLSLSYTPI----GRRIFKCDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTD  113 (441)
Q Consensus        43 c~~~~~~~c~~~~---~~~-~l~~L~~l~l~~n~i----~~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~  113 (441)
                      |++ .++.|+..+   +|. ..++|+.|+|++|.|    |..+..+++|++|+|++|+|+.+|.. |..+++|+.|+|++
T Consensus        19 Cs~-~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           19 CSG-TTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             EET-TEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             EeC-CEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            443 467787633   333 236888899988844    44567788899999999998888766 68888899999999


Q ss_pred             CcCCCCCCch-hhhcCCCCCEEEccCCCCCccchhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHHHh
Q psy2947         114 NCLQNASIPF-TLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEVLR  192 (441)
Q Consensus       114 n~l~~~~~p~-~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~l~  192 (441)
                      |+++  .+|. .+..+++|++|+|++|+|+.+|..+..+++|+.|+|++|++.                           
T Consensus        98 N~l~--~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~---------------------------  148 (229)
T 3e6j_A           98 NQLT--VLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK---------------------------  148 (229)
T ss_dssp             SCCC--CCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCC---------------------------
T ss_pred             CcCC--ccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCC---------------------------
Confidence            9887  5554 457888899999999998888888888888999999888842                           


Q ss_pred             hcccccCC-chhhhhhhhcccccccccCCCC
Q psy2947         193 KQKKLHQP-SRLQDLAVQSVIASKENFFEPG  222 (441)
Q Consensus       193 ~~~~~~~p-~~l~~l~~l~~l~l~~n~~~~~  222 (441)
                           .+| ..+..++.|+.+++++|++.+.
T Consensus       149 -----~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          149 -----SIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             -----CCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             -----ccCHHHHhCCCCCCEEEeeCCCccCC
Confidence                 222 2456678888999999998864

>3a8r_A Putative uncharacterized protein; EF-hand, membrane, oxidoreductase, transmembrane, calcium BI protein; 2.40A {Oryza sativa japonica group}

Probab=99.70  E-value=2.5e-16  Score=134.82  Aligned_cols=122  Identities=15%  Similarity=0.179  Sum_probs=99.9

Q ss_pred             CCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhc---CCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCC
Q psy2947         310 KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAAD---TTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSG  386 (441)
Q Consensus       310 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D---~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G  386 (441)
                      ++|.|+.+||..++.    ...+.+.+..+|+.+|   .+++|.|+++||..++..+. .....+.++.+|+.||.|++|
T Consensus        39 ~dG~I~~~el~~~lg----~~~~~~~~~~i~~~~d~~~~~~~~~i~~~ef~~~~~~~~-~~~~~~~l~~~F~~~D~d~dG  113 (179)
T 3a8r_A           39 VDGVLLRSRFGKCIG----MDGSDEFAVQMFDSLARKRGIVKQVLTKDELKDFYEQLT-DQGFDNRLRTFFDMVDKNADG  113 (179)
T ss_dssp             BTTBEEGGGHHHHHT----CCSCHHHHHHHHHHHHHHHTCCSSEECHHHHHHHHHHHH-CCCHHHHHHHHHHHHCTTCSS
T ss_pred             CCCCCcHHHHHHHHC----CCCcHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHc-CCCHHHHHHHHHHHHCCCCCC
Confidence            678888888887552    2345566777887777   56789999999999887653 233467899999999999999


Q ss_pred             cccHHHHHHHHH-HhCCC-C------CHHHHHHHHHHhCCCCCCceeHHHHHHHHhcc
Q psy2947         387 TVPAKYLKHVLV-NWGEG-L------SSKEVDQIFREANVTMNSKVRYEDFVKIACAP  436 (441)
Q Consensus       387 ~is~~ef~~~l~-~~~~~-l------~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~~  436 (441)
                      +|+.+||+.+++ .+|.. +      ++++++.+|+.+|.|+||.|+|+||+.++.+.
T Consensus       114 ~Is~~El~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~~  171 (179)
T 3a8r_A          114 RLTAEEVKEIIALSASANKLSKIKERADEYTALIMEELDPTNLGYIEMEDLEALLLQS  171 (179)
T ss_dssp             CBCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSTTCCSEECHHHHHHHHC--
T ss_pred             cCCHHHHHHHHHHHhccccccccccchHHHHHHHHHHhCCCCCCcCcHHHHHHHHHhC
Confidence            999999999998 78765 5      78899999999999999999999999998653

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.70  E-value=1.3e-16  Score=146.31  Aligned_cols=169  Identities=20%  Similarity=0.209  Sum_probs=136.5

Q ss_pred             CCCCCcccEEeccCCC---cCcc-cCCCCCCCEEEccCCCCCcCCcC-ccCCCCCcEEEccCCcCCCCCCchhhhcCCCC
Q psy2947          57 PQYFSHAFLLSLSYTP---IGRR-IFKCDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPFTLTFCKNL  131 (441)
Q Consensus        57 ~~~l~~L~~l~l~~n~---i~~~-~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L  131 (441)
                      +..+++|+.|++++|.   +|.. +..+++|++|+|++|+++.+|.. |..+++|++|++++|.++ +..|..+..+++|
T Consensus        57 ~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L  135 (270)
T 2o6q_A           57 FHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKL  135 (270)
T ss_dssp             SSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred             hcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccC-eeCHHHhCcCcCC
Confidence            3458999999999994   4444 46799999999999999988876 789999999999999998 4444557999999


Q ss_pred             CEEEccCCCCCccc-hhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCch-hhhhhh
Q psy2947         132 THLYLDNNLLDALP-GFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSR-LQDLAV  208 (441)
Q Consensus       132 ~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~-l~~l~~  208 (441)
                      ++|++++|.|+.+| ..+..+++|+.|++++|.+....         +..+..++.+..+ +++|.+..+|+. +..++.
T Consensus       136 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  206 (270)
T 2o6q_A          136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP---------EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEK  206 (270)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC---------TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred             CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC---------hhHhccCCCcCEEECCCCcCCcCCHHHhccccC
Confidence            99999999999998 45889999999999999964432         3346667777777 888888888764 788999


Q ss_pred             hcccccccccCCCCCC-CchhhhHHHhh
Q psy2947         209 QSVIASKENFFEPGLF-PGPLVDYIARE  235 (441)
Q Consensus       209 l~~l~l~~n~~~~~~~-p~~~~~~l~~~  235 (441)
                      |+.+++++|++.+..- ...+.+|+...
T Consensus       207 L~~L~l~~N~~~c~c~~~~~~~~~l~~~  234 (270)
T 2o6q_A          207 LKMLQLQENPWDCTCNGIIYMAKWLKKK  234 (270)
T ss_dssp             CCEEECCSSCBCCSSSSSHHHHHHHHHH
T ss_pred             CCEEEecCCCeeCCCccHHHHHHHHHhh
Confidence            9999999999987542 23455666544

>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A

Probab=99.70  E-value=7.1e-17  Score=133.35  Aligned_cols=138  Identities=28%  Similarity=0.477  Sum_probs=119.8

Q ss_pred             ceecccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHH----hCCCcccHHHHHHHHHhhcCCCC
Q psy2947         258 VFTFKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLA----EKGGKLSFPDFLKVMHTHSKAED  331 (441)
Q Consensus       258 ~~l~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~~~~~  331 (441)
                      ..+++.++..+++.|..+|.+  |.| +..++..+++.++..++..++..++.    +++|.|+++||..++........
T Consensus         3 ~~l~~~~~~~l~~~F~~~D~~~~G~i-~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~   81 (147)
T 4ds7_A            3 QNLTEEQIAEFKEAFALFDKDNSGSI-SASELATVMRSLGLSPSEAEVADLMNEIDVDGNHAIEFSEFLALMSRQLKCND   81 (147)
T ss_dssp             -CCCHHHHHHHHHHHHHHCTTCSSEE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTSSSEEEHHHHHHHHHHHHHTHH
T ss_pred             CcCCHHHHHHHHHHHHHHCCCCCCCc-CHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHhccCCC
Confidence            346788899999999999976  788 89999999999999999988887775    67899999999999976544444


Q ss_pred             CHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy2947         332 IPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLV  398 (441)
Q Consensus       332 ~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~  398 (441)
                      ..+.+..+|+.+|.|++|.|+.+||..++... +.....+++..+|+.+| +++|.|+++||.++++
T Consensus        82 ~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d-~~dg~i~~~eF~~~l~  146 (147)
T 4ds7_A           82 SEQELLEAFKVFDKNGDGLISAAELKHVLTSI-GEKLTDAEVDEMLREVS-DGSGEINIKQFAALLS  146 (147)
T ss_dssp             HHHHHHHHHHHHCTTCSSEECHHHHHHHHHHT-TCCCCHHHHHHHHHHHS-SSCSSEEHHHHHHHTT
T ss_pred             cHHHHHHHHHHhCCCCCCeECHHHHHHHHHHc-CCCCCHHHHHHHHHHhc-CCCCcCcHHHHHHHHh
Confidence            56789999999999999999999999999876 45566789999999999 9999999999999874

>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A {Rattus norvegicus} PDB: 2e30_A

Probab=99.70  E-value=9.4e-17  Score=141.17  Aligned_cols=124  Identities=20%  Similarity=0.294  Sum_probs=99.0

Q ss_pred             HhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCC---------------CChHH
Q psy2947         308 AEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAE---------------DIPKE  372 (441)
Q Consensus       308 ~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~---------------~~~~~  372 (441)
                      .+++|.|+.+||..++. ... ...   ...+|+.+|.+++|.|+++||..++.......               ...+.
T Consensus        40 ~d~dG~Is~~El~~~~~-lg~-~~~---~~~l~~~~d~~~~g~i~~~EF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (208)
T 2ct9_A           40 KGENGTLSREDFQRIPE-LAI-NPL---GDRIINAFFSEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNK  114 (208)
T ss_dssp             TTCSSEECTGGGGGCHH-HHT-STT---HHHHHHTTSCTTCSCEEHHHHHHHHHTTSCCC-----------CCTTSHHHH
T ss_pred             CCCCCcCcHHHHHHHHH-cCC-CCc---HHHHHHHHcCCCCCcCcHHHHHHHHHhhccccchhhhcccccccccccHHHH
Confidence            45677777777766432 111 111   24678889999999999999999887653211               14578


Q ss_pred             HHHHHHHhCCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHH----HHHhCCCCCCceeHHHHHHHHhcc
Q psy2947         373 VVDAFKAADTTKSGTVPAKYLKHVLVNW-GEGLSSKEVDQI----FREANVTMNSKVRYEDFVKIACAP  436 (441)
Q Consensus       373 ~~~~f~~~D~~~~G~is~~ef~~~l~~~-~~~l~~~~~~~l----~~~~d~d~dg~i~~~ef~~~l~~~  436 (441)
                      ++.+|+.+|.|++|+|+.+||+.++..+ |..+++++++.+    ++.+|.|+||.|+|+||+.++.+.
T Consensus       115 l~~~F~~~D~d~dG~Is~~El~~~l~~~~g~~~s~~~~~~l~~~~~~~~D~d~dG~Is~~EF~~~~~~~  183 (208)
T 2ct9_A          115 LHFAFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVLEKV  183 (208)
T ss_dssp             HHHHHHHHCTTCSSEECHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHCSSSSSSEEHHHHHHTTTTS
T ss_pred             HHHHHHHHCCCCCCEEcHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHhcc
Confidence            8999999999999999999999999997 999999999888    999999999999999999988653

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.70  E-value=5.1e-17  Score=159.78  Aligned_cols=173  Identities=23%  Similarity=0.303  Sum_probs=126.7

Q ss_pred             CCcCCCCCccCC---CCccCCCC---CCCC-CCcccEEeccCCCcC----cccCCCCCCCEEEccCCCCCcCCcC-ccCC
Q psy2947          36 QTACQRNCSLEV---GGICSHIW---IPQY-FSHAFLLSLSYTPIG----RRIFKCDTVEVLSLKSNSLTSLPPD-IGRL  103 (441)
Q Consensus        36 ~~~C~~~c~~~~---~~~c~~~~---~~~~-l~~L~~l~l~~n~i~----~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l  103 (441)
                      ..+||..|.|..   .+.|...+   +|.. .++++.|+|++|.|.    ..+..+++|++|+|++|.++.++.. |..+
T Consensus        32 ~~~Cp~~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l  111 (440)
T 3zyj_A           32 AQTCPSVCSCSNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGL  111 (440)
T ss_dssp             -CCCCSSSEECTTSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTC
T ss_pred             cccCCCCCEeCCCCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCC
Confidence            346999999963   37788643   3433 367899999999553    5678899999999999999977754 8999


Q ss_pred             CCCcEEEccCCcCCCCCCch-hhhcCCCCCEEEccCCCCCccc-hhhcCCCCCCEEEccCCcCccCccccccccccc-cc
Q psy2947         104 TNLRVLCLTDNCLQNASIPF-TLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIH-AR  180 (441)
Q Consensus       104 ~~L~~L~l~~n~l~~~~~p~-~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p-~~  180 (441)
                      ++|++|+|++|+++  .+|. .+..+++|++|+|++|+|+.+| ..|..+++|+.|++++|...         ..++ ..
T Consensus       112 ~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l---------~~i~~~~  180 (440)
T 3zyj_A          112 ANLNTLELFDNRLT--TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRL---------SYISEGA  180 (440)
T ss_dssp             SSCCEEECCSSCCS--SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTC---------CEECTTT
T ss_pred             ccCCEEECCCCcCC--eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCc---------ceeCcch
Confidence            99999999999998  6665 5789999999999999998887 57788889999999885421         1122 23


Q ss_pred             ccccchhHHH-HhhcccccCCchhhhhhhhcccccccccCC
Q psy2947         181 IRSTSTRDEV-LRKQKKLHQPSRLQDLAVQSVIASKENFFE  220 (441)
Q Consensus       181 l~~l~~~~~~-l~~~~~~~~p~~l~~l~~l~~l~l~~n~~~  220 (441)
                      +..++.+..+ +.+|.+..+| .+..+++|+.|++++|.+.
T Consensus       181 ~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~  220 (440)
T 3zyj_A          181 FEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLS  220 (440)
T ss_dssp             TTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCCC
T ss_pred             hhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCccC
Confidence            4555555555 5666666665 3566666666666666544

>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...

Probab=99.70  E-value=1.2e-16  Score=134.33  Aligned_cols=141  Identities=21%  Similarity=0.377  Sum_probs=120.7

Q ss_pred             cceecccchHHHHHhhhcccc---CCCccCHHHHHHHHHHcCCCcCHHHHHHHHH----hCCCcccHHHHHHHHHhhcC-
Q psy2947         257 KVFTFKTPYLEFRECFFLFAR---NGTIKTLDELSVIMRSLGMSPTIAELKKYLA----EKGGKLSFPDFLKVMHTHSK-  328 (441)
Q Consensus       257 ~~~l~~~~~~~l~~~f~~~d~---~G~i~~~~el~~~~~~~~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~~-  328 (441)
                      ...+++.++..++++|..+|.   +|.| +.+++..+++.++..++..++..++.    +++|.|+++||..++..... 
T Consensus         9 ~~~l~~~~~~~l~~~F~~~D~~~~~G~i-~~~e~~~~l~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~eF~~~~~~~~~~   87 (161)
T 1dtl_A            9 VEQLTEEQKNEFKAAFDIFVLGAEDGSI-STKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRSMKD   87 (161)
T ss_dssp             GGGSCHHHHHHHHHHHHHHTTTCGGGSB-CHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTSSSSBCHHHHHHHHHHHHC-
T ss_pred             HhhCCHHHHHHHHHHHHHHcCCCCCCcC-cHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHHhcc
Confidence            345677889999999999996   4678 89999999999999899888888775    68999999999999987754 


Q ss_pred             --CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         329 --AEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       329 --~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                        .....+.+..+|+.+|.|++|.|+.+||+.++... ......+.+..+|+.+|.+++|.|+++||..++..
T Consensus        88 ~~~~~~~~~~~~~F~~~D~d~~G~i~~~El~~~l~~~-g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~~  159 (161)
T 1dtl_A           88 DSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQAT-GETITEDDIEELMKDGDKNNDGRIDYDEFLEFMKG  159 (161)
T ss_dssp             ----CHHHHHHHHHHHHCTTCSSEEEHHHHGGGGTTC---CCCHHHHHHHHHHHCTTSSSEEEHHHHHHHHHC
T ss_pred             cccchHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHc
Confidence              34556789999999999999999999999988766 34456788999999999999999999999999864

>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR {Homo sapiens} PDB: 2l4i_A 2lm5_A

Probab=99.70  E-value=3.4e-17  Score=144.56  Aligned_cols=119  Identities=19%  Similarity=0.311  Sum_probs=98.8

Q ss_pred             CcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCc-ccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccH
Q psy2947         312 GKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGK-LSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPA  390 (441)
Q Consensus       312 g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~-i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~  390 (441)
                      |.|+.+||.. +...... ..   ...+|+.+|.|++|. |+++||..++..........+.++.+|+.||.|++|+|+.
T Consensus        74 G~I~~~E~~~-l~~lg~~-~~---~~~lf~~~D~d~dG~~I~f~EF~~~~~~~~~~~~~~~~l~~~F~~~D~d~dG~Is~  148 (214)
T 2l4h_A           74 AQVPFEQILS-LPELKAN-PF---KERICRVFSTSPAKDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNR  148 (214)
T ss_dssp             SEECHHHHTT-CHHHHTS-TT---HHHHHHHHCCSSSCCSEEHHHHHHHHHHTSSCSCHHHHHHHHHHHHCTTCSSCBCH
T ss_pred             CcCCHHHHHH-hhccCCC-hH---HHHHHHHhCcCCCCCEecHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCCCCcCCH
Confidence            8888888887 5443222 22   346889999999999 9999999999877544444678999999999999999999


Q ss_pred             HHHHHHHHHhCC-----CCCHHHHHH----HHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         391 KYLKHVLVNWGE-----GLSSKEVDQ----IFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       391 ~ef~~~l~~~~~-----~l~~~~~~~----l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      +||+.++..++.     .+++++++.    +|+.+|.|+||.|+|+||+.++.+
T Consensus       149 ~El~~~l~~~~~~~~~~~~s~~e~~~~~~~~~~~~D~d~dG~Is~~EF~~~~~~  202 (214)
T 2l4h_A          149 EDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQHVISR  202 (214)
T ss_dssp             HHHHHHHHHHHHSSSCTTCSCTHHHHHHHHHHHHHCCSCCSSBCSHHHHHHHHT
T ss_pred             HHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence            999999998764     677777765    999999999999999999999865

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.69  E-value=5.8e-17  Score=159.96  Aligned_cols=172  Identities=23%  Similarity=0.295  Sum_probs=123.4

Q ss_pred             CCcCCCCCccCC---CCccCCCC---CCCCC-CcccEEeccCCCc----CcccCCCCCCCEEEccCCCCCcCC-cCccCC
Q psy2947          36 QTACQRNCSLEV---GGICSHIW---IPQYF-SHAFLLSLSYTPI----GRRIFKCDTVEVLSLKSNSLTSLP-PDIGRL  103 (441)
Q Consensus        36 ~~~C~~~c~~~~---~~~c~~~~---~~~~l-~~L~~l~l~~n~i----~~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l  103 (441)
                      ...||..|.|..   .+.|...+   +|..+ ++|+.|+|++|.|    |..+..+++|++|+|++|.|+.++ ..|..+
T Consensus        43 ~~~Cp~~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l  122 (452)
T 3zyi_A           43 PQNCPSVCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGL  122 (452)
T ss_dssp             -CCCCTTSEECSSSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             cCCCCCCCEECCCCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCc
Confidence            346999999953   47788744   34433 5899999999955    456788999999999999999766 459999


Q ss_pred             CCCcEEEccCCcCCCCCCch-hhhcCCCCCEEEccCCCCCccc-hhhcCCCCCCEEEccCCcCccCccccccccccc-cc
Q psy2947         104 TNLRVLCLTDNCLQNASIPF-TLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIH-AR  180 (441)
Q Consensus       104 ~~L~~L~l~~n~l~~~~~p~-~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p-~~  180 (441)
                      ++|++|+|++|.++  .+|. .+..+++|++|+|++|+|+.+| ..|..+++|+.|++++|...         ..++ ..
T Consensus       123 ~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l---------~~i~~~~  191 (452)
T 3zyi_A          123 ASLNTLELFDNWLT--VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKL---------EYISEGA  191 (452)
T ss_dssp             TTCCEEECCSSCCS--BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTC---------CEECTTT
T ss_pred             ccCCEEECCCCcCC--ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCc---------cccChhh
Confidence            99999999999998  5665 4788999999999999999887 57788888888888885421         1112 23


Q ss_pred             ccccchhHHH-HhhcccccCCchhhhhhhhcccccccccC
Q psy2947         181 IRSTSTRDEV-LRKQKKLHQPSRLQDLAVQSVIASKENFF  219 (441)
Q Consensus       181 l~~l~~~~~~-l~~~~~~~~p~~l~~l~~l~~l~l~~n~~  219 (441)
                      +..++.+..+ +.+|.+..+| .+..+++|+.|++++|.+
T Consensus       192 ~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l  230 (452)
T 3zyi_A          192 FEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHF  230 (452)
T ss_dssp             TTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCC
T ss_pred             ccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcC
Confidence            4444444444 5555555554 355555555555555544

>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=99.69  E-value=1.5e-16  Score=131.10  Aligned_cols=130  Identities=25%  Similarity=0.448  Sum_probs=115.9

Q ss_pred             HHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHH-hCCCcccHHHHHHHHHhhc-CCCCCHHHHHHHHHhh
Q psy2947         268 FRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLA-EKGGKLSFPDFLKVMHTHS-KAEDIPKEVVDAFKAA  343 (441)
Q Consensus       268 l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~-~~~g~i~~~ef~~~~~~~~-~~~~~~~~~~~~f~~~  343 (441)
                      ++++|..+|.+  |.| +.+++..+++.++..++..++..++. +++|.|+++||..++.... ........++.+|+.+
T Consensus         7 l~~~F~~~D~d~~G~i-~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~~~~~~~~~~~~~~~l~~~F~~~   85 (145)
T 2bl0_B            7 IQECFQIFDKDNDGKV-SIEELGSALRSLGKNPTNAELNTIKGQLNAKEFDLATFKTVYRKPIKTPTEQSKEMLDAFRAL   85 (145)
T ss_dssp             HHHHHHHHCTTCSSCE-EGGGHHHHHHHTTCCCCHHHHHHHHHHHTSSEECHHHHHHHHTSCCCCGGGGHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCcCcc-CHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCeEcHHHHHHHHHHHhhcCcccHHHHHHHHHHh
Confidence            88999999976  888 89999999999999999999998887 7999999999999998654 3344568899999999


Q ss_pred             cCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         344 DTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       344 D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      |.|++|.|+.+||..++... +.....+++..+|+.+|.+++|.|+++||..++..
T Consensus        86 D~d~~G~i~~~e~~~~l~~~-g~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~~~  140 (145)
T 2bl0_B           86 DKEGNGTIQEAELRQLLLNL-GDALTSSEVEELMKEVSVSGDGAINYESFVDMLVT  140 (145)
T ss_dssp             CSSSSSEEEHHHHHHHHHHS-SSCCCHHHHHHHHTTCCCCTTSEEEHHHHHHHHHH
T ss_pred             CCCCCCeEcHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCCCCcEeHHHHHHHHHh
Confidence            99999999999999999877 34456789999999999999999999999999986

>2lvv_A Flagellar calcium-binding protein TB-24; EF-hand, metal binding protein; NMR {Trypanosoma brucei brucei}

Probab=99.69  E-value=2.7e-17  Score=146.55  Aligned_cols=127  Identities=20%  Similarity=0.246  Sum_probs=96.3

Q ss_pred             HHHhCCCcccHHHHHHHHHhhcCCCCCHHH----HHHHHHhh-----cCCCCCcccHHHHHHHHHhhccCCCChHHHHHH
Q psy2947         306 YLAEKGGKLSFPDFLKVMHTHSKAEDIPKE----VVDAFKAA-----DTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDA  376 (441)
Q Consensus       306 ~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~----~~~~f~~~-----D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~  376 (441)
                      ++.+++|.|+++||..++........+...    +..+|..+     |.|++|.|+++||..++..... ....+.++.+
T Consensus        60 ~D~d~dG~Is~~El~~~l~~~lg~~~~~~~~~~~~~~~f~~~~~~~~D~d~~G~I~~~EF~~~~~~~~~-~~~~~~l~~~  138 (226)
T 2lvv_A           60 FDTNGTGKLGFREVLDGCYGILKLDEFTTHLPDIVQRAFDKAKDLGNKVKGVGEEDLVEFLEFRLMLCY-IYDIFELTVM  138 (226)
T ss_dssp             HGGGSCSCBCSHHHHHHHHHTTCCTTTSSSCHHHHHHHHHHHHHHHHHHSCCCCCSCBCHHHHHHHHHH-HHHHHHHHHH
T ss_pred             HCCCCCCcCcHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcCCHHHHHHHHHHHHh-ccCHHHHHHH
Confidence            336788888888888855544333333333    44444444     9999999999999995432211 1113578999


Q ss_pred             HHHhCCCCCCcccHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         377 FKAADTTKSGTVPAKYLKHVLVNW---GEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       377 f~~~D~~~~G~is~~ef~~~l~~~---~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      |+.+|.|++|+|+.+||+.++..+   |...+  +++.+|+.+|.|+||.|+|+||+.+|.+
T Consensus       139 F~~~D~d~dG~Is~~El~~~l~~~~~~g~~~~--e~~~~~~~~D~d~dG~Is~~EF~~~~~~  198 (226)
T 2lvv_A          139 FDTMDKDGSLLLELQEFKEALPKLKEWGVDIT--DATTVFNEIDTNGSGVVTFDEFSCWAVT  198 (226)
T ss_dssp             HHHHSCSSCCEECHHHHHHHHHHHHHHTCCCC--SCHHHHHHHCCSCSSCEEHHHHHHHHHH
T ss_pred             HHHHcCCCCCeEcHHHHHHHHHHHhhcCCCHH--HHHHHHHHhCCCCCCcEeHHHHHHHHHh
Confidence            999999999999999999999987   65554  5899999999999999999999999854

>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence, southeast collabora structural genomics, secsg, structural genomics, PSI; HET: CTZ; 1.72A {Renilla muelleri} PDB: 2hq8_A

Probab=99.69  E-value=1e-17  Score=144.49  Aligned_cols=150  Identities=11%  Similarity=0.128  Sum_probs=110.9

Q ss_pred             eecccchHHHHHhhhccccC--CCccCHHHHHHHHHHc------CCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCC
Q psy2947         259 FTFKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSL------GMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAE  330 (441)
Q Consensus       259 ~l~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~------~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~  330 (441)
                      .+++.++.+++++|..+|.+  |.| +.+|+..+++.+      +..++..++..+..                .     
T Consensus         7 ~l~~~~~~~l~~~F~~~D~d~dG~i-~~~El~~~l~~~~~~~~~g~~~~~~~~~~l~~----------------~-----   64 (186)
T 2hps_A            7 SERAYHLRKMKTRMQRVDVTGDGFI-SREDYELIAVRIAKIAKLSAEKAEETRQEFLR----------------V-----   64 (186)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTCSSEE-EHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH----------------H-----
T ss_pred             cccHHHHHHHHHHhhhcCCCCCCcc-CHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH----------------H-----
Confidence            45667788888888888875  778 788888888765      43333333322221                0     


Q ss_pred             CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHH--HHhCCCCCCcccHHHHHHHHHHhCCCCCHHH
Q psy2947         331 DIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAF--KAADTTKSGTVPAKYLKHVLVNWGEGLSSKE  408 (441)
Q Consensus       331 ~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f--~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~  408 (441)
                        ...+ .+|+.+|.|++|.|+++|  .++..........+.+...|  +.||.|++|.|+.+||++++..+|..+++++
T Consensus        65 --~~~~-~~f~~~D~d~dg~I~~~E--~~~~~~~~~~~~~~~~~~~f~~~~fD~d~~G~I~~~E~~~~l~~~g~~~~~~~  139 (186)
T 2hps_A           65 --ADQL-GLAPGVRISVEEAAVNAT--DSLLKMKGEEKAMAVIQSLIMYDCIDTDKDGYVSLPEFKAFLQAVGPDLTDDK  139 (186)
T ss_dssp             --HHHH-TCCTTCEEEHHHHHHHHH--HHHHHCCTHHHHHTTHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHCTTCCHHH
T ss_pred             --HHHH-HHHHhcCCCCCCcccHHH--HHHHHhcCChHHHHHHHHHHHHHHccCCCCCcCCHHHHHHHHHHhCCCCCHHH
Confidence              0123 457889999999999999  55544321111112344445  7789999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         409 VDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       409 ~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      ++.+|+.+|.|++|.|+|+||+.++..
T Consensus       140 ~~~~~~~~D~d~dG~i~~~ef~~~~~~  166 (186)
T 2hps_A          140 AITCFNTLDFNKNGQISRDEFLVTVND  166 (186)
T ss_dssp             HHHHHHHHCTTCSSEEEHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCcCcHHHHHHHHHH
Confidence            999999999999999999999998864

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.69  E-value=5.6e-17  Score=170.48  Aligned_cols=106  Identities=28%  Similarity=0.275  Sum_probs=83.3

Q ss_pred             CCCcccEEeccCC----CcCcccCCCCCCCEEEccCCCCC-cCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCE
Q psy2947          59 YFSHAFLLSLSYT----PIGRRIFKCDTVEVLSLKSNSLT-SLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTH  133 (441)
Q Consensus        59 ~l~~L~~l~l~~n----~i~~~~~~l~~L~~L~l~~n~l~-~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~  133 (441)
                      .+++|+.|++++|    .+|..+..+++|++|++++|+++ .+|..+..+++|+.|++++|+++ +.+|..++.+++|++
T Consensus       440 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~  518 (768)
T 3rgz_A          440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT-GEIPKWIGRLENLAI  518 (768)
T ss_dssp             GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC-SCCCGGGGGCTTCCE
T ss_pred             cCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccC-CcCChHHhcCCCCCE
Confidence            3567777777777    34566677788888888888887 67777888888888888888887 778888888888888


Q ss_pred             EEccCCCCC-ccchhhcCCCCCCEEEccCCcCc
Q psy2947         134 LYLDNNLLD-ALPGFLLSMPQLDTVYRHGNHNY  165 (441)
Q Consensus       134 L~l~~n~l~-~lp~~~~~l~~L~~L~l~~N~~~  165 (441)
                      |++++|++. .+|..++.+++|+.|++++|++.
T Consensus       519 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  551 (768)
T 3rgz_A          519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN  551 (768)
T ss_dssp             EECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred             EECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence            888888884 67888888888888888888764

>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...

Probab=99.68  E-value=1.3e-16  Score=134.07  Aligned_cols=141  Identities=22%  Similarity=0.428  Sum_probs=120.7

Q ss_pred             ceecccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHH----hCCCcccHHHHHHHHHhhcCCCC
Q psy2947         258 VFTFKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLA----EKGGKLSFPDFLKVMHTHSKAED  331 (441)
Q Consensus       258 ~~l~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~~~~~  331 (441)
                      ..+++.++..++++|..+|.+  |.| +..++..+++.++..++..++..++.    +++|.|+++||..++........
T Consensus        12 ~~ls~~~~~~l~~~F~~~D~d~~G~i-~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~   90 (162)
T 1top_A           12 AFLSEEMIAEFKAAFDMFDADGGGDI-STKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDA   90 (162)
T ss_dssp             HHSCHHHHHHHHHHHHTTTCSCSSEE-EGGGHHHHHHHTTCCCCHHHHHHHHHHHCTTSCCEEEHHHHHHHHHHHHHHHH
T ss_pred             hhcCHHHHHHHHHHHHHHCCCCCCcC-CHHHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCcEeHHHHHHHHHHHhcccc
Confidence            356788899999999999975  888 89999999999999889888887775    57899999999999875532212


Q ss_pred             ---CHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         332 ---IPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       332 ---~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                         ....+..+|+.+|.|++|.|+.+||+.++... +.....+++..+|+.+|.+++|.|+++||..++..+
T Consensus        91 ~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~-g~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~~~~  161 (162)
T 1top_A           91 KGKSEEELANCFRIFDKNADGFIDIEELGEILRAT-GEHVTEEDIEDLMKDSDKNNDGRIDFDEFLKMMEGV  161 (162)
T ss_dssp             HHHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHTT-TCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHSC
T ss_pred             ccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhhc
Confidence               45678999999999999999999999999876 344567889999999999999999999999998754

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.68  E-value=1e-16  Score=160.26  Aligned_cols=128  Identities=19%  Similarity=0.325  Sum_probs=109.7

Q ss_pred             HhCCCcccHHHHHHHHHhhc-------CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHh
Q psy2947         308 AEKGGKLSFPDFLKVMHTHS-------KAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAA  380 (441)
Q Consensus       308 ~~~~g~i~~~ef~~~~~~~~-------~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~  380 (441)
                      .+++|.|+.+||..++....       ......+++..+|+.+|.|++|.|+++||..++... ......+.++.+|+.+
T Consensus       366 ~d~dG~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~~-~~~~~~~~~~~~F~~~  444 (504)
T 3q5i_A          366 KNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFDKNGYIEYSEFISVCMDK-QILFSEERLRRAFNLF  444 (504)
T ss_dssp             TTCSSEECHHHHHHHHHHHHHHC--CCSCCCHHHHHHHHHHHHCTTCSSSEEHHHHHHHHSCH-HHHTCHHHHHHHHHHH
T ss_pred             CCCCCeEcHHHHHHHHHHhhhcccccccccccHHHHHHHHHHhCCCCCCcEeHHHHHHHHHhh-hcccCHHHHHHHHHHh
Confidence            57899999999999887653       224557899999999999999999999999988654 2223367899999999


Q ss_pred             CCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhccCC
Q psy2947         381 DTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAPVP  438 (441)
Q Consensus       381 D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~~~~  438 (441)
                      |.|++|+|+.+||+.++...  .+++++++++|+.+|.|+||.|+|+||+++|.+...
T Consensus       445 D~d~dG~Is~~El~~~l~~~--~~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~~~~  500 (504)
T 3q5i_A          445 DTDKSGKITKEELANLFGLT--SISEKTWNDVLGEADQNKDNMIDFDEFVSMMHKICD  500 (504)
T ss_dssp             CTTCCSEECHHHHHHHTTCS--CCCHHHHHHHHHTTCSSCSSSEEHHHHHHHHHHHC-
T ss_pred             cCCCCCcCcHHHHHHHHhhC--CCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHhcc
Confidence            99999999999999998763  489999999999999999999999999999976543

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.68  E-value=2.1e-16  Score=157.34  Aligned_cols=127  Identities=17%  Similarity=0.306  Sum_probs=107.6

Q ss_pred             HhCCCcccHHHHHHHHHhhcCC---CCC-------HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHH
Q psy2947         308 AEKGGKLSFPDFLKVMHTHSKA---EDI-------PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAF  377 (441)
Q Consensus       308 ~~~~g~i~~~ef~~~~~~~~~~---~~~-------~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f  377 (441)
                      .+++|.|+.+||..++......   ..+       .+++..+|+.+|.|++|.|+++||..++... ......+.++.+|
T Consensus       346 ~d~dG~I~~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~D~d~~g~i~~~Ef~~~~~~~-~~~~~~~~~~~~F  424 (484)
T 3nyv_A          346 KNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFDKNGYIEYSEFVTVAMDR-KTLLSRERLERAF  424 (484)
T ss_dssp             TTCSSEEEHHHHHHHHHHHHC----CGGGCSHHHHHHHHHHHHHHHTCCTTSEEEHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred             cCCCceEeHHHHHHHHHHHhhhcccccccccccccHHHHHHHHHHhCCCCCCeEeHHHHHHHHHhc-cccCcHHHHHHHH
Confidence            5789999999997777655332   222       6789999999999999999999999987765 2222356889999


Q ss_pred             HHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhccC
Q psy2947         378 KAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAPV  437 (441)
Q Consensus       378 ~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~~~  437 (441)
                      +.+|.|+||+|+.+||+.++..  ..+++++++.+|+.+|.|+||.|+|+||+++|.+-.
T Consensus       425 ~~~D~d~dG~I~~~El~~~l~~--~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~~~~~  482 (484)
T 3nyv_A          425 RMFDSDNSGKISSTELATIFGV--SDVDSETWKSVLSEVDKNNDGEVDFDEFQQMLLKLC  482 (484)
T ss_dssp             HHHCTTCCSEEEHHHHHHHHHH--TTCCHHHHHHHHHHHCTTCCSEEEHHHHHHHHHHTT
T ss_pred             HHHCCCCCCcCCHHHHHHHHHh--cCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHhhh
Confidence            9999999999999999999987  458999999999999999999999999999997643

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.68  E-value=3.1e-17  Score=163.39  Aligned_cols=130  Identities=17%  Similarity=0.302  Sum_probs=92.1

Q ss_pred             HhCCCcccHHHHHHHHHhhcC---C----------CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHH
Q psy2947         308 AEKGGKLSFPDFLKVMHTHSK---A----------EDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVV  374 (441)
Q Consensus       308 ~~~~g~i~~~ef~~~~~~~~~---~----------~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~  374 (441)
                      .+++|.|+.+||..++.....   .          ....+.+..+|+.+|.|++|.|+++||..++.... .....+.++
T Consensus       342 ~d~dG~I~~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~I~~~Ef~~~~~~~~-~~~~~~~~~  420 (486)
T 3mwu_A          342 TNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPLLDMDGSGSIEYSEFIASAIDRT-ILLSRERME  420 (486)
T ss_dssp             TTCSSSBCHHHHHHHHHHHHHHHTCCGGGHHHHTSSCHHHHHHHHHHHHCTTCCSSBCHHHHHHHHSCTT-TTCCHHHHH
T ss_pred             CCCCceeeHHHHHHHHHHhhhhhcccchhcccccchhhHHHHHHHHHHhcCCCCCcCcHHHHHHHHHhhh-ccchHHHHH
Confidence            578999999999776664421   1          12367899999999999999999999998876542 333467899


Q ss_pred             HHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhccCC
Q psy2947         375 DAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAPVP  438 (441)
Q Consensus       375 ~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~~~~  438 (441)
                      .+|+.+|.|+||.|+.+||+.++...|..+++++++.+|+.+|.|+||.|+|+||+++|.+-+.
T Consensus       421 ~~F~~~D~d~dG~Is~~El~~~l~~~g~~~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~~~~  484 (486)
T 3mwu_A          421 RAFKMFDKDGSGKISTKELFKLFSQADSSIQMEELESIIEQVDNNKDGEVDFNEFVEMLQNFVR  484 (486)
T ss_dssp             HHHHHHCSSCSSSBCSSCC--------------------CCCCSSCSSSBCHHHHHHHHHHHCC
T ss_pred             HHHHHhCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999999999999999999999999999999976543

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.68  E-value=6.2e-17  Score=161.52  Aligned_cols=128  Identities=20%  Similarity=0.301  Sum_probs=109.2

Q ss_pred             HhCCCcccHHHHHHHHHhhcCC-------CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHh
Q psy2947         308 AEKGGKLSFPDFLKVMHTHSKA-------EDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAA  380 (441)
Q Consensus       308 ~~~~g~i~~~ef~~~~~~~~~~-------~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~  380 (441)
                      .+++|.|+++||..++......       ....+++..+|+.+|.|++|.|+++||..++... ......+.++.+|+.+
T Consensus       357 ~d~dG~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~~G~I~~~EF~~~~~~~-~~~~~~~~~~~~F~~~  435 (494)
T 3lij_A          357 KNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFDRNGYIDYSEFVTVAMDR-KSLLSKDKLESAFQKF  435 (494)
T ss_dssp             TTCSSEECHHHHHHTTHHHHSSCCCCC--CHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHSCH-HHHTCHHHHHHHHHHH
T ss_pred             cCCCCeEcHHHHHHHHHHhcccccccccccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHhh-hccccHHHHHHHHHHH
Confidence            4789999999999998877432       2336889999999999999999999999987654 2223467899999999


Q ss_pred             CCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhccCC
Q psy2947         381 DTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAPVP  438 (441)
Q Consensus       381 D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~~~~  438 (441)
                      |+|++|+|+.+||++++..  ..+++++++++|+.+|.|+||.|+|+||+++|.+-.+
T Consensus       436 D~d~~G~Is~~El~~~l~~--~~~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~~~~  491 (494)
T 3lij_A          436 DQDGNGKISVDELASVFGL--DHLESKTWKEMISGIDSNNDGDVDFEEFCKMIQKLCS  491 (494)
T ss_dssp             CTTCSSEECHHHHHHHC-C--CSCCCHHHHHHHHTTCSSSSSSEEHHHHHHHHHHHSS
T ss_pred             CCCCCCcCCHHHHHHHHHh--cCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhhcc
Confidence            9999999999999999975  5688999999999999999999999999999976433

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.67  E-value=1.2e-16  Score=158.80  Aligned_cols=172  Identities=23%  Similarity=0.301  Sum_probs=132.6

Q ss_pred             cCCCCCccCC---CCccCCCC---CCCC-CCcccEEeccCCCc----CcccCCCCCCCEEEccCCCCCcC-CcCccCCCC
Q psy2947          38 ACQRNCSLEV---GGICSHIW---IPQY-FSHAFLLSLSYTPI----GRRIFKCDTVEVLSLKSNSLTSL-PPDIGRLTN  105 (441)
Q Consensus        38 ~C~~~c~~~~---~~~c~~~~---~~~~-l~~L~~l~l~~n~i----~~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~  105 (441)
                      +||..|.|..   .+.|...+   +|.. .++|+.|+|++|.|    |..+..+++|++|+|++|.++.+ |..|..+++
T Consensus         2 ~Cp~~C~C~~~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~   81 (477)
T 2id5_A            2 GCPPRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFN   81 (477)
T ss_dssp             CCSTTCEEETTTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             cccCCCeECCCCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCcc
Confidence            6999999954   47788643   4443 35899999999955    35678899999999999999966 666999999


Q ss_pred             CcEEEccCCcCCCCCCchh-hhcCCCCCEEEccCCCCCcc-chhhcCCCCCCEEEccCCcCccCcccccccccccccccc
Q psy2947         106 LRVLCLTDNCLQNASIPFT-LTFCKNLTHLYLDNNLLDAL-PGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRS  183 (441)
Q Consensus       106 L~~L~l~~n~l~~~~~p~~-~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~  183 (441)
                      |++|++++|.++  .+|.. +.++++|++|+|++|.+..+ |..|..+++|+.|++++|.+...         .+..+..
T Consensus        82 L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~---------~~~~~~~  150 (477)
T 2id5_A           82 LRTLGLRSNRLK--LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYI---------SHRAFSG  150 (477)
T ss_dssp             CCEEECCSSCCC--SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEE---------CTTSSTT
T ss_pred             CCEEECCCCcCC--ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCcccee---------ChhhccC
Confidence            999999999998  67764 68999999999999999876 47888999999999999986332         2445555


Q ss_pred             cchhHHH-HhhcccccCCc-hhhhhhhhcccccccccCC
Q psy2947         184 TSTRDEV-LRKQKKLHQPS-RLQDLAVQSVIASKENFFE  220 (441)
Q Consensus       184 l~~~~~~-l~~~~~~~~p~-~l~~l~~l~~l~l~~n~~~  220 (441)
                      ++.+..+ +.+|.+..+|. .+..+++|+.|+++.|.+.
T Consensus       151 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~  189 (477)
T 2id5_A          151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN  189 (477)
T ss_dssp             CTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred             CCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence            6666555 66666666663 3566677777777666543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.67  E-value=2.3e-16  Score=145.77  Aligned_cols=165  Identities=22%  Similarity=0.241  Sum_probs=88.6

Q ss_pred             CCcccEEeccCCC-c----CcccCCCCCCCEEEccCCCCCcCC-cCccCCCCCcEEEccCCcCCCCCCch-hhhcCCCCC
Q psy2947          60 FSHAFLLSLSYTP-I----GRRIFKCDTVEVLSLKSNSLTSLP-PDIGRLTNLRVLCLTDNCLQNASIPF-TLTFCKNLT  132 (441)
Q Consensus        60 l~~L~~l~l~~n~-i----~~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~~~~p~-~~~~l~~L~  132 (441)
                      +++|+.|++++|. +    |..+..+++|++|++++|.++.++ ..+..+++|++|++++|.++  .+|. .+..+++|+
T Consensus        79 l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~  156 (285)
T 1ozn_A           79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ--ALPDDTFRDLGNLT  156 (285)
T ss_dssp             CTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCC
T ss_pred             ccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc--ccCHhHhccCCCcc
Confidence            4445555555442 2    223444455555555555555332 22444555555555555554  2332 244455555


Q ss_pred             EEEccCCCCCccch-hhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCc-hhhhhhhh
Q psy2947         133 HLYLDNNLLDALPG-FLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPS-RLQDLAVQ  209 (441)
Q Consensus       133 ~L~l~~n~l~~lp~-~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~-~l~~l~~l  209 (441)
                      +|++++|+++.+|. .+..+++|+.|++++|.+         ....|..+..++.+..+ +.+|.+..+|+ .+..++.|
T Consensus       157 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l---------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  227 (285)
T 1ozn_A          157 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV---------AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL  227 (285)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSSCC---------CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTC
T ss_pred             EEECCCCcccccCHHHhcCccccCEEECCCCcc---------cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCccc
Confidence            55555555554442 344455555555555543         22335566666666666 77777777764 47778888


Q ss_pred             cccccccccCCCCCCCchhhhHHHhh
Q psy2947         210 SVIASKENFFEPGLFPGPLVDYIARE  235 (441)
Q Consensus       210 ~~l~l~~n~~~~~~~p~~~~~~l~~~  235 (441)
                      +.+++++|++.+..-...+.+|+...
T Consensus       228 ~~L~l~~N~~~c~~~~~~~~~~l~~~  253 (285)
T 1ozn_A          228 QYLRLNDNPWVCDCRARPLWAWLQKF  253 (285)
T ss_dssp             CEEECCSSCEECSGGGHHHHHHHHHC
T ss_pred             CEEeccCCCccCCCCcHHHHHHHHhc
Confidence            88888888877654334455555443

>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell membrane, hydrolase, MEMB protease, thiol protease, phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A 1df0_A 1u5i_A 1kfu_L 1kfx_L

Probab=99.67  E-value=5.1e-16  Score=160.33  Aligned_cols=158  Identities=15%  Similarity=0.164  Sum_probs=136.6

Q ss_pred             ecccc-hHHHHHhhhcccc-CCCccCHHHHHHHHHHc--------CCCcCHHHHHHHHH----hCCCcccHHHHHHHHHh
Q psy2947         260 TFKTP-YLEFRECFFLFAR-NGTIKTLDELSVIMRSL--------GMSPTIAELKKYLA----EKGGKLSFPDFLKVMHT  325 (441)
Q Consensus       260 l~~~~-~~~l~~~f~~~d~-~G~i~~~~el~~~~~~~--------~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~  325 (441)
                      +++++ ..++++.|..+|. +|.| +.+|++.+++.+        +..++..++..++.    +++|.|+++||..++..
T Consensus       525 ls~~e~~~~l~~~F~~~Dd~dG~I-s~~El~~~L~~l~~~~~~~~g~~~s~~~~~~l~~~~D~d~~G~I~f~EF~~l~~~  603 (714)
T 3bow_A          525 ANEEDIGDGFRRLFAQLAGEDAEI-SAFELQTILRRVLAKREDIKSDGFSIETCKIMVDMLDEDGSGKLGLKEFYILWTK  603 (714)
T ss_dssp             CSGGGCCHHHHHHHHHHHGGGTSB-CHHHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHCCSSCSSBCHHHHHHHHHH
T ss_pred             CChhhHHHHHHHHHHHHcCCCCcC-CHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence            55666 8899999999982 3889 899999999997        66788888887765    68899999999999986


Q ss_pred             hcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCC
Q psy2947         326 HSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLS  405 (441)
Q Consensus       326 ~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~  405 (441)
                      .       +.++.+|+.+|.|++|.|+.+||+.++.... .....+.++.+|+.+| |++|.|+++||..++...     
T Consensus       604 ~-------~~l~~~F~~~D~d~dG~Is~~El~~~L~~~G-~~ls~~~~~~l~~~~D-d~dG~Isf~EF~~~l~~~-----  669 (714)
T 3bow_A          604 I-------QKYQKIYREIDVDRSGTMNSYEMRKALEEAG-FKLPCQLHQVIVARFA-DDELIIDFDNFVRCLVRL-----  669 (714)
T ss_dssp             H-------HHHHHHHHHHCTTCCSSEEHHHHHHHHHHTT-EECCHHHHHHHHHHHS-CTTCEECHHHHHHHHHHH-----
T ss_pred             H-------HHHHHHHHHhCCCCCCeECHHHHHHHHHHcC-CCCCHHHHHHHHHHhC-CCCCeEcHHHHHHHHHHH-----
Confidence            4       7899999999999999999999999998763 3455788999999999 999999999999999764     


Q ss_pred             HHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy2947         406 SKEVDQIFREANVTMNSKVRYEDFVKIA  433 (441)
Q Consensus       406 ~~~~~~l~~~~d~d~dg~i~~~ef~~~l  433 (441)
                       +.+..+|+.+|.|++|.|+.+|+..++
T Consensus       670 -~~l~~~F~~~D~d~dG~Is~~el~~l~  696 (714)
T 3bow_A          670 -EILFKIFKQLDPENTGTIQLDLISWLS  696 (714)
T ss_dssp             -HHHHHHHSSSCSSCCSEEEEEHHHHHH
T ss_pred             -HHHHHHHHHhCCCCCCcEEHHHHHHHH
Confidence             678899999999999999998876544

>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B* 2p6b_B 1aui_B 1m63_B* 1tco_B*

Probab=99.67  E-value=4.5e-16  Score=129.78  Aligned_cols=138  Identities=15%  Similarity=0.268  Sum_probs=113.7

Q ss_pred             ccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHH-HHHHHhCCCcccHHHHHHHHHhhcCCCCCHHHHHH
Q psy2947         262 KTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAEL-KKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVD  338 (441)
Q Consensus       262 ~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~  338 (441)
                      ++++.++++.|..+|.+  |.| +.+|+ ..+..++..+....+ ..+..+++|.|+++||..++..........+.++.
T Consensus         2 ~~~~~~l~~~F~~~D~d~~G~i-~~~el-~~l~~~~~~~~~~~~~~~~D~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~   79 (155)
T 3ll8_B            2 ADEIKRLGKRFKKLDLDNSGSL-SVEEF-MSLPELQQNPLVQRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKLRF   79 (155)
T ss_dssp             CHHHHHHHHHHHHHCTTCSSSB-CHHHH-TTSGGGTTCTTHHHHHHHHCTTCSSSBCHHHHHHHHGGGCSSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCCCCeE-cHHHH-HHhhccccchHHHHHHHHHCCCCCCcCcHHHHHHHHHHHcccCCHHHHHHH
Confidence            56789999999999875  889 89999 566666665544433 33445789999999999999987666667789999


Q ss_pred             HHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHH----hCCCCCCcccHHHHHHHHHHhC
Q psy2947         339 AFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKA----ADTTKSGTVPAKYLKHVLVNWG  401 (441)
Q Consensus       339 ~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~----~D~~~~G~is~~ef~~~l~~~~  401 (441)
                      +|+.+|.|++|.|+.+||..++..........+.+..+|+.    +|.+++|.|+++||..++...+
T Consensus        80 ~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~~~  146 (155)
T 3ll8_B           80 AFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAVVGGLD  146 (155)
T ss_dssp             HHHHHCTTCSSCBCHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHCTTSSSSBCHHHHHHHHGGGC
T ss_pred             HHHHhCCCCCCcCcHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHhccC
Confidence            99999999999999999999998743445556777777777    9999999999999999998865

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.67  E-value=6.4e-16  Score=132.17  Aligned_cols=128  Identities=29%  Similarity=0.396  Sum_probs=105.1

Q ss_pred             CCCCCccC-CCCccCCCC---CCC-CCCcccEEeccCCCc---Cc-ccCCCCCCCEEEccCCCCCcCCcC-ccCCCCCcE
Q psy2947          39 CQRNCSLE-VGGICSHIW---IPQ-YFSHAFLLSLSYTPI---GR-RIFKCDTVEVLSLKSNSLTSLPPD-IGRLTNLRV  108 (441)
Q Consensus        39 C~~~c~~~-~~~~c~~~~---~~~-~l~~L~~l~l~~n~i---~~-~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~  108 (441)
                      ||..|+|. .++.|...+   +|. ..++|+.|++++|.+   |. .+..+++|++|++++|+++.+|.. |..+++|+.
T Consensus         1 Cp~~C~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~   80 (177)
T 2o6r_A            1 CPSRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTI   80 (177)
T ss_dssp             CCTTCEEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CcCCCEeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCE
Confidence            88899984 456777633   232 347899999999954   43 457889999999999999988876 789999999


Q ss_pred             EEccCCcCCCCCCch-hhhcCCCCCEEEccCCCCCccch-hhcCCCCCCEEEccCCcCccCc
Q psy2947         109 LCLTDNCLQNASIPF-TLTFCKNLTHLYLDNNLLDALPG-FLLSMPQLDTVYRHGNHNYFKS  168 (441)
Q Consensus       109 L~l~~n~l~~~~~p~-~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~l~~N~~~~~~  168 (441)
                      |++++|.++  .+|. .+..+++|++|++++|+|+.+|. .+..+++|+.|++++|++.+.+
T Consensus        81 L~l~~N~l~--~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           81 LYLHENKLQ--SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             EECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             EECCCCCcc--ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            999999998  5555 46899999999999999999985 4678999999999999976654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.67  E-value=3.2e-16  Score=133.07  Aligned_cols=112  Identities=29%  Similarity=0.367  Sum_probs=94.4

Q ss_pred             cCCCCCccCCCCccCCCCCCCCCCcccEEeccCC---CcCcccCCCCCCCEEEccCCCCCcCCc-CccCCCCCcEEEccC
Q psy2947          38 ACQRNCSLEVGGICSHIWIPQYFSHAFLLSLSYT---PIGRRIFKCDTVEVLSLKSNSLTSLPP-DIGRLTNLRVLCLTD  113 (441)
Q Consensus        38 ~C~~~c~~~~~~~c~~~~~~~~l~~L~~l~l~~n---~i~~~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~l~~  113 (441)
                      +||..|.|.                .+.+++++|   .+|..+.  ++|++|+|++|+|+.+++ .|..+++|++|+|++
T Consensus         2 ~CP~~C~C~----------------~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~   63 (170)
T 3g39_A            2 ACPSQCSCS----------------GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDN   63 (170)
T ss_dssp             CCC-CCEEE----------------TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred             cCcCcCCcC----------------CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCC
Confidence            699999994                245677777   4565553  889999999999998854 599999999999999


Q ss_pred             CcCCCCCCchh-hhcCCCCCEEEccCCCCCccch-hhcCCCCCCEEEccCCcCccCcc
Q psy2947         114 NCLQNASIPFT-LTFCKNLTHLYLDNNLLDALPG-FLLSMPQLDTVYRHGNHNYFKST  169 (441)
Q Consensus       114 n~l~~~~~p~~-~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~l~~N~~~~~~~  169 (441)
                      |+|+  .+|.. +..+++|++|+|++|+|+.+|. .|..+++|+.|+|++|++.+.+.
T Consensus        64 N~l~--~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           64 NQLT--VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CCcC--ccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            9998  56654 6899999999999999999985 68899999999999999988773

>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated, SEN membrane targeting, EF-hand, cell projection, cilium; 2.00A {Trypanosoma cruzi}

Probab=99.67  E-value=2.3e-17  Score=146.36  Aligned_cols=90  Identities=18%  Similarity=0.221  Sum_probs=74.9

Q ss_pred             CCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHHhCCCCCCc
Q psy2947         345 TTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGE-GLSSKEVDQIFREANVTMNSK  423 (441)
Q Consensus       345 ~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~-~l~~~~~~~l~~~~d~d~dg~  423 (441)
                      .|++|.|++.||..++..... ....+.++.+|+.+|.|++|+|+.+||++++..+|. .+++++++.+|+.+|.|++|.
T Consensus       105 ~d~~g~I~~~EF~~~~~~~~~-~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~~~~e~~~l~~~~D~d~dG~  183 (219)
T 3cs1_A          105 LENKGSEDFVEFLEFRLMLCY-IYDFFELTVMFDEIDASGNMLVDEEEFKRAVPKLEAWGAKVEDPAALFKELDKNGTGS  183 (219)
T ss_dssp             HHTSCCCSSBCHHHHHHHHHH-HHHHHHHHHHHHTTCSSSSSEEEHHHHHHHHHHHHHHTCCCSCHHHHHHHHCTTSSSE
T ss_pred             cCCCCcCCHHHHHHHHHHHhc-cchHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhcccCCCHHHHHHHHHHhCCCCCCc
Confidence            378888998888887644311 112457889999999999999999999999998886 788888999999999999999


Q ss_pred             eeHHHHHHHHhc
Q psy2947         424 VRYEDFVKIACA  435 (441)
Q Consensus       424 i~~~ef~~~l~~  435 (441)
                      |+|+||+.+|.+
T Consensus       184 I~~~EF~~~~~~  195 (219)
T 3cs1_A          184 VTFDEFAAWASA  195 (219)
T ss_dssp             EEHHHHHHHHHH
T ss_pred             EeHHHHHHHHHH
Confidence            999999998864

>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A

Probab=99.67  E-value=4.7e-16  Score=134.74  Aligned_cols=137  Identities=14%  Similarity=0.272  Sum_probs=114.0

Q ss_pred             ceecccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHH----HhCCCcccHHHHHHHHHhhcCCCC
Q psy2947         258 VFTFKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYL----AEKGGKLSFPDFLKVMHTHSKAED  331 (441)
Q Consensus       258 ~~l~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~----~~~~g~i~~~ef~~~~~~~~~~~~  331 (441)
                      ..++..++..++++|..+|.+  |.| +.+|+..+++.++..++ .++..++    .+++|.|+++||..++....  ..
T Consensus        44 ~~l~~~~~~~l~~~F~~~D~d~~G~i-~~~El~~~l~~~g~~~~-~~~~~l~~~~D~d~~g~i~~~EF~~~~~~~~--~~  119 (191)
T 3k21_A           44 QQSNDYDVEKLKSTFLVLDEDGKGYI-TKEQLKKGLEKDGLKLP-YNFDLLLDQIDSDGSGKIDYTEFIAAALDRK--QL  119 (191)
T ss_dssp             HHCCCHHHHHHHHHHHHHCTTCSSEE-CHHHHHHHHHHTTCCCC-TTHHHHHHHHCTTCSSSEEHHHHHHHHSCGG--GC
T ss_pred             HHCCHHHHHHHHHHHHHHCCCCCCCC-cHHHHHHHHHHcCCCcH-HHHHHHHHHhCCCCCCeEeHHHHHHHHHhhh--hc
Confidence            345788999999999999986  888 89999999999987766 5555555    47899999999999985443  35


Q ss_pred             CHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccC-CCCh---HHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy2947         332 IPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKA-EDIP---KEVVDAFKAADTTKSGTVPAKYLKHVLV  398 (441)
Q Consensus       332 ~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~-~~~~---~~~~~~f~~~D~~~~G~is~~ef~~~l~  398 (441)
                      ..+.+..+|+.+|.|++|.|+.+||..++.....+ ....   +++..+|+.+|.|+||.|+++||.++|+
T Consensus       120 ~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~~l~~~~~~~~~~~~~~~D~d~dG~Is~~EF~~~~~  190 (191)
T 3k21_A          120 SKKLIYCAFRVFDVDNDGEITTAELAHILYNGNKKGNITQRDVNRVKRMIRDVDKNNDGKIDFHEFSEMMK  190 (191)
T ss_dssp             CHHHHHHHHHHHSTTCSSCBCHHHHHHHHHHSSSCSCCCHHHHHHHHHHHHHHCSSSSSSBCHHHHHHHHC
T ss_pred             cHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHHhcCCCCCeECHHHHHHHHc
Confidence            67889999999999999999999999999874322 2222   4689999999999999999999999874

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.67  E-value=8.6e-17  Score=150.72  Aligned_cols=175  Identities=19%  Similarity=0.213  Sum_probs=117.7

Q ss_pred             CCCcccEEeccCCC----cCcccCCCCCCCEEEccCCCCC-cCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCC-CCC
Q psy2947          59 YFSHAFLLSLSYTP----IGRRIFKCDTVEVLSLKSNSLT-SLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCK-NLT  132 (441)
Q Consensus        59 ~l~~L~~l~l~~n~----i~~~~~~l~~L~~L~l~~n~l~-~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~-~L~  132 (441)
                      .+++|++|++++|.    +|..+..+++|++|+|++|.++ .+|..+..+++|++|++++|.++ +.+|..+..++ +|+
T Consensus        99 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~p~~l~~l~~~L~  177 (313)
T 1ogq_A           99 KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS-GAIPDSYGSFSKLFT  177 (313)
T ss_dssp             GCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCE-EECCGGGGCCCTTCC
T ss_pred             cCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCccc-CcCCHHHhhhhhcCc
Confidence            57888999998884    4667888899999999999988 78888889999999999999987 78888888887 889


Q ss_pred             EEEccCCCCC-ccchhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCchhhhhhhhc
Q psy2947         133 HLYLDNNLLD-ALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSRLQDLAVQS  210 (441)
Q Consensus       133 ~L~l~~n~l~-~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~l~~l~~l~  210 (441)
                      +|++++|+++ .+|..+..++ |+.|++++|.+.         +.+|..+..++.+..+ +.+|.+...++.+..++.|+
T Consensus       178 ~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~---------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~  247 (313)
T 1ogq_A          178 SMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE---------GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLN  247 (313)
T ss_dssp             EEECCSSEEEEECCGGGGGCC-CSEEECCSSEEE---------ECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCC
T ss_pred             EEECcCCeeeccCChHHhCCc-ccEEECcCCccc---------CcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCC
Confidence            9999999885 6777777776 888888888743         2234444444444444 44454443333444455555


Q ss_pred             ccccccccCCCCCCCchhhhHHHhhhcCCcccccc
Q psy2947         211 VIASKENFFEPGLFPGPLVDYIAREYNQYHVCHYC  245 (441)
Q Consensus       211 ~l~l~~n~~~~~~~p~~~~~~l~~~~~~~~~~~~~  245 (441)
                      .|++++|.+. +.+|..+..........+..+.+.
T Consensus       248 ~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~  281 (313)
T 1ogq_A          248 GLDLRNNRIY-GTLPQGLTQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             EEECCSSCCE-ECCCGGGGGCTTCCEEECCSSEEE
T ss_pred             EEECcCCccc-CcCChHHhcCcCCCEEECcCCccc
Confidence            5555555443 224444433323333333334333

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.67  E-value=3.8e-16  Score=143.28  Aligned_cols=154  Identities=24%  Similarity=0.265  Sum_probs=127.5

Q ss_pred             CCCCcccEEeccCCCcC--cccCCCCCCCEEEccCCCCCcCCcC-ccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEE
Q psy2947          58 QYFSHAFLLSLSYTPIG--RRIFKCDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHL  134 (441)
Q Consensus        58 ~~l~~L~~l~l~~n~i~--~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L  134 (441)
                      ..+++|+.|++++|.+.  ..+..+++|++|++++|.++.+|+. |..+++|++|++++|.++ +..|..+..+++|++|
T Consensus        60 ~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L  138 (272)
T 3rfs_A           60 QYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYL  138 (272)
T ss_dssp             GGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEE
T ss_pred             ccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCC-ccCHHHhccCCCCCEE
Confidence            34889999999999653  4678899999999999999988776 789999999999999998 4444457899999999


Q ss_pred             EccCCCCCccc-hhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCch-hhhhhhhcc
Q psy2947         135 YLDNNLLDALP-GFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSR-LQDLAVQSV  211 (441)
Q Consensus       135 ~l~~n~l~~lp-~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~-l~~l~~l~~  211 (441)
                      ++++|+++.+| ..+..+++|+.|++++|.+...         .+..+..++.+..+ +.+|.+..+|+. +..++.|+.
T Consensus       139 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  209 (272)
T 3rfs_A          139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL---------PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY  209 (272)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC---------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             ECCCCccCccCHHHhccCccCCEEECCCCCcCcc---------CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCE
Confidence            99999999887 4568899999999999986432         23445667777777 888888777654 688999999


Q ss_pred             cccccccCCC
Q psy2947         212 IASKENFFEP  221 (441)
Q Consensus       212 l~l~~n~~~~  221 (441)
                      +++++|++.+
T Consensus       210 L~l~~N~~~~  219 (272)
T 3rfs_A          210 IWLHDNPWDC  219 (272)
T ss_dssp             EECCSSCBCC
T ss_pred             EEccCCCccc
Confidence            9999999875

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.67  E-value=4.7e-17  Score=146.37  Aligned_cols=171  Identities=13%  Similarity=0.073  Sum_probs=129.6

Q ss_pred             cCCCCCccCC--C--CccCC-CCCCCCCCcccEEeccCCCc---Cc-ccCCCCCCCEEEccCCC-CCcCCc-CccCCCCC
Q psy2947          38 ACQRNCSLEV--G--GICSH-IWIPQYFSHAFLLSLSYTPI---GR-RIFKCDTVEVLSLKSNS-LTSLPP-DIGRLTNL  106 (441)
Q Consensus        38 ~C~~~c~~~~--~--~~c~~-~~~~~~l~~L~~l~l~~n~i---~~-~~~~l~~L~~L~l~~n~-l~~lp~-~~~~l~~L  106 (441)
                      .||..|.|..  +  +.|.. ..+|....+|+.|++++|.|   |. .+..+++|++|++++|. ++.+|+ .|..+++|
T Consensus         3 ~cp~~C~C~~~~~~~v~c~~l~~ip~~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L   82 (239)
T 2xwt_C            3 CSSPPCECHQEEDFRVTCKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKV   82 (239)
T ss_dssp             CCSSSCSEEECSTTEEEECSCSSCCCCCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTC
T ss_pred             CCCCCCeeCCCCcceeEccCccccCCCCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCC
Confidence            5999999954  3  34865 33444345899999999954   33 57789999999999997 998887 48999999


Q ss_pred             cEEEccC-CcCCCCCCc-hhhhcCCCCCEEEccCCCCCccchhhcCCCCCC---EEEccCC-cCccCccccccccccccc
Q psy2947         107 RVLCLTD-NCLQNASIP-FTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLD---TVYRHGN-HNYFKSTFMWYHSDIHAR  180 (441)
Q Consensus       107 ~~L~l~~-n~l~~~~~p-~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~---~L~l~~N-~~~~~~~~~~~~~~~p~~  180 (441)
                      ++|++++ |.++  .+| ..+..+++|++|++++|+++.+|. +..+++|+   .|++++| .+....         +..
T Consensus        83 ~~L~l~~~n~l~--~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~---------~~~  150 (239)
T 2xwt_C           83 THIEIRNTRNLT--YIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIP---------VNA  150 (239)
T ss_dssp             CEEEEEEETTCC--EECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEEC---------TTT
T ss_pred             cEEECCCCCCee--EcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcC---------ccc
Confidence            9999998 9998  566 467889999999999999988987 77888888   9999999 653221         234


Q ss_pred             ccccchhH-HH-HhhcccccCCchhhhhhhhccccccccc-CC
Q psy2947         181 IRSTSTRD-EV-LRKQKKLHQPSRLQDLAVQSVIASKENF-FE  220 (441)
Q Consensus       181 l~~l~~~~-~~-l~~~~~~~~p~~l~~l~~l~~l~l~~n~-~~  220 (441)
                      +..++.+. .+ +.+|.+..+|......+.|+.+++++|. +.
T Consensus       151 ~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~  193 (239)
T 2xwt_C          151 FQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLT  193 (239)
T ss_dssp             TTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCC
T ss_pred             ccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcc
Confidence            55566665 55 6677777777655555778888888774 44

>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand, phosphoprotein, calcium binding; 2.65A {Homo sapiens}

Probab=99.67  E-value=2.8e-16  Score=137.61  Aligned_cols=152  Identities=16%  Similarity=0.194  Sum_probs=120.3

Q ss_pred             ccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHH----hCCCcccHHHHHHHHHhhcCCCCCHHH
Q psy2947         262 KTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLA----EKGGKLSFPDFLKVMHTHSKAEDIPKE  335 (441)
Q Consensus       262 ~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~~~~~~~~~  335 (441)
                      ..++..+++.|..+|.+  |.| +..|+..+++.++..++..++..++.    +++|.|+++||..++...... ...+.
T Consensus        33 ~~~~~~l~~~F~~~D~d~~G~i-~~~e~~~~l~~~~~~~~~~~~~~~~~~~D~d~dg~i~~~ef~~~~~~~~~~-~~~~~  110 (204)
T 3e3r_A           33 ASGIQGLARFFRQLDRDGSRSL-DADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLEEFLRALRPPMSQ-AREAV  110 (204)
T ss_dssp             -------CHHHHHHCTTCCSSB-CHHHHHHHHHTTTCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHTSCCCCH-HHHHH
T ss_pred             chhHHHHHHHHHHHccCCCCCc-CHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHhhcCc-hHHHH
Confidence            45678889999999976  889 89999999999999999988888775    689999999999998643221 23567


Q ss_pred             HHHHHHhhcCCCCCcccHHHHHHHHHhh------ccCCCChHHHHHHHHHhCC-CCCCcccHHHHHHHHHHhCC-CCCHH
Q psy2947         336 VVDAFKAADTTKSGKLSFPDFLKVMHTH------SKAEDIPKEVVDAFKAADT-TKSGTVPAKYLKHVLVNWGE-GLSSK  407 (441)
Q Consensus       336 ~~~~f~~~D~d~~g~i~~~ef~~~~~~~------~~~~~~~~~~~~~f~~~D~-~~~G~is~~ef~~~l~~~~~-~l~~~  407 (441)
                      +..+|+.+|.|++|.|+.+||..++...      .......+.++.+|+.+|. |++|.|+++||..++..++. -.+++
T Consensus       111 ~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~dg~Is~~EF~~~~~~~~~~~~~d~  190 (204)
T 3e3r_A          111 IAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDEVLRRFLDNFDSSEKDGQVTLAEFQDYYSGVSASMNTDE  190 (204)
T ss_dssp             HHHHHHHHCTTCSSEECHHHHHHHCCCTTCHHHHTTSSCHHHHHHHHHHHHSCSSCCSCEEHHHHHHHHHHHHHHCSSHH
T ss_pred             HHHHHHHhCcCCCCeEeHHHHHHHHccccCCccccCCCChHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHcCccCCChH
Confidence            9999999999999999999999988743      1233445679999999999 99999999999999998773 34677


Q ss_pred             HHHHHHHH
Q psy2947         408 EVDQIFRE  415 (441)
Q Consensus       408 ~~~~l~~~  415 (441)
                      +.+.+++.
T Consensus       191 ~f~~~~~~  198 (204)
T 3e3r_A          191 EFVAMMTS  198 (204)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77777664

>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase activating protein, GCAP, GCAP3, GCAP-3, lyase activator; 3.00A {Homo sapiens}

Probab=99.66  E-value=2.4e-16  Score=138.91  Aligned_cols=127  Identities=17%  Similarity=0.326  Sum_probs=108.5

Q ss_pred             Hh-CCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCC
Q psy2947         308 AE-KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSG  386 (441)
Q Consensus       308 ~~-~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G  386 (441)
                      .+ ++|.|+.+||..++..........+.+..+|+.+|.|++|.|+++||..++.... .....+.++.+|+.+|.|++|
T Consensus        30 ~~~~~G~is~~El~~~l~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~~~-~~~~~~~l~~~F~~~D~d~~G  108 (211)
T 2ggz_A           30 MEYPSGLQTLHEFKTLLGLQGLNQKANKHIDQVYNTFDTNKDGFVDFLEFIAAVNLIM-QEKMEQKLKWYFKLYDADGNG  108 (211)
T ss_dssp             HHCTTSEEEHHHHHHHTTCCSCCHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHS-CSSHHHHHHHHHHHHCTTCSS
T ss_pred             HhCCCCcCCHHHHHHHHHHhCCCcchHHHHHHHHHHHcCCCCCeEeHHHHHHHHHHhc-cCchHHHHHHHHHHhcCCCCC
Confidence            56 8999999999999875433222345699999999999999999999999998764 334567899999999999999


Q ss_pred             cccHHHHHHHHHHhC-----CCCCH-HHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         387 TVPAKYLKHVLVNWG-----EGLSS-KEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       387 ~is~~ef~~~l~~~~-----~~l~~-~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      .|+.+||++++..++     ..++. +.++.+|+.+|.|++|.|+|+||+.++.+
T Consensus       109 ~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~  163 (211)
T 2ggz_A          109 SIDKNELLDMFMAVQALNGQQTLSPEEFINLVFHKIDINNDGELTLEEFINGMAK  163 (211)
T ss_dssp             SBCHHHHHHHHHHHTTSSCCCSCTHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHT
T ss_pred             cCcHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHh
Confidence            999999999999886     55665 45899999999999999999999999864

>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A 2fce_A

Probab=99.66  E-value=1.2e-16  Score=132.19  Aligned_cols=133  Identities=19%  Similarity=0.330  Sum_probs=113.5

Q ss_pred             chHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHH-----hCCCcccHHHHHHHHHhh--c---CCCC
Q psy2947         264 PYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLA-----EKGGKLSFPDFLKVMHTH--S---KAED  331 (441)
Q Consensus       264 ~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~-----~~~g~i~~~ef~~~~~~~--~---~~~~  331 (441)
                      ++.+++++|..+|.+  |.| +..++..+++.++..++..++..++.     +++|.|+++||..++...  .   ....
T Consensus         2 ~~~~l~~~F~~~D~d~~G~i-~~~el~~~l~~~g~~~~~~~~~~l~~~~~D~~~~g~i~~~eF~~~~~~~~~~~~~~~~~   80 (148)
T 1m45_A            2 ATRANKDIFTLFDKKGQGAI-AKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLDQITGLIEVNEKELDATTKA   80 (148)
T ss_dssp             -CCCCTTCHHHHCTTCCSEE-EGGGHHHHHHHTTCCCCHHHHHHHHHC--CC--CCEEEHHHHHHHHHHTHHHHHGGGCC
T ss_pred             hHHHHHHHHHHHCCCCCCCC-CHHHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCCeEcHHHHHHHHHHHHhhccccccc
Confidence            345677889999976  888 89999999999999999988888764     568999999999999876  2   3345


Q ss_pred             CHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy2947         332 IPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLV  398 (441)
Q Consensus       332 ~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~  398 (441)
                      ..+.+..+|+.+|.|++|.|+.+||+.++... +.....+++..+|+.+|.+++|.|+++||.+++.
T Consensus        81 ~~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~-g~~~~~~~~~~~~~~~d~d~dg~i~~~eF~~~~~  146 (148)
T 1m45_A           81 KTEDFVKAFQVFDKESTGKVSVGDLRYMLTGL-GEKLTDAEVDELLKGVEVDSNGEIDYKKFIEDVL  146 (148)
T ss_dssp             CTHHHHHHHHTTCSSSSSEEEHHHHHHHHHHS-TTCCCHHHHHHHHTTCCCCTTSEEEHHHHHHHHH
T ss_pred             cHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHc-CCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHh
Confidence            67889999999999999999999999999877 4455678899999999999999999999999885

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.66  E-value=1.8e-16  Score=146.74  Aligned_cols=158  Identities=25%  Similarity=0.289  Sum_probs=134.1

Q ss_pred             CCcccEEeccCCCc----CcccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEE
Q psy2947          60 FSHAFLLSLSYTPI----GRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLY  135 (441)
Q Consensus        60 l~~L~~l~l~~n~i----~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~  135 (441)
                      .++|+.|++++|.|    +..+..+++|++|+|++|.|+.+|.. ..+++|+.|++++|.++  .+|..+..+++|++|+
T Consensus        30 ~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~--~l~~~~~~l~~L~~L~  106 (290)
T 1p9a_G           30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQ--SLPLLGQTLPALTVLD  106 (290)
T ss_dssp             CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCS--SCCCCTTTCTTCCEEE
T ss_pred             CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcCC--cCchhhccCCCCCEEE
Confidence            36899999999965    35688899999999999999988765 78999999999999998  8999899999999999


Q ss_pred             ccCCCCCccc-hhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCch-hhhhhhhccc
Q psy2947         136 LDNNLLDALP-GFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSR-LQDLAVQSVI  212 (441)
Q Consensus       136 l~~n~l~~lp-~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~-l~~l~~l~~l  212 (441)
                      +++|+|+.+| ..|..+++|+.|++++|++....         +..+..++.+..+ +.+|.+..+|.. +..++.|+.|
T Consensus       107 l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~---------~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L  177 (290)
T 1p9a_G          107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLP---------PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL  177 (290)
T ss_dssp             CCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC---------TTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEE
T ss_pred             CCCCcCcccCHHHHcCCCCCCEEECCCCCCCccC---------hhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEE
Confidence            9999999987 67899999999999999964322         3345667777777 889999998865 4779999999


Q ss_pred             ccccccCCCCCCCchhhhH
Q psy2947         213 ASKENFFEPGLFPGPLVDY  231 (441)
Q Consensus       213 ~l~~n~~~~~~~p~~~~~~  231 (441)
                      ++++|.+..  +|..+...
T Consensus       178 ~L~~N~l~~--ip~~~~~~  194 (290)
T 1p9a_G          178 LLQENSLYT--IPKGFFGS  194 (290)
T ss_dssp             ECCSSCCCC--CCTTTTTT
T ss_pred             ECCCCcCCc--cChhhccc
Confidence            999998874  88776553

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.66  E-value=5.8e-16  Score=131.89  Aligned_cols=114  Identities=25%  Similarity=0.361  Sum_probs=96.6

Q ss_pred             CCcCCCCCccCCCCccCCCCCCCCCCcccEEeccCC---CcCcccCCCCCCCEEEccCCCCCcCCc-CccCCCCCcEEEc
Q psy2947          36 QTACQRNCSLEVGGICSHIWIPQYFSHAFLLSLSYT---PIGRRIFKCDTVEVLSLKSNSLTSLPP-DIGRLTNLRVLCL  111 (441)
Q Consensus        36 ~~~C~~~c~~~~~~~c~~~~~~~~l~~L~~l~l~~n---~i~~~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~l  111 (441)
                      ..+||..|+|..                +.+++++|   .+|..+.  ++|++|+|++|+|+.+++ .|..+++|+.|+|
T Consensus         3 ~~~CP~~C~C~~----------------~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   64 (174)
T 2r9u_A            3 SAGCPSQCSCDQ----------------TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYF   64 (174)
T ss_dssp             CCSSCTTSEECS----------------SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCCCCCEECC----------------cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEEC
Confidence            357999999942                35666666   5666554  899999999999998754 5999999999999


Q ss_pred             cCCcCCCCCCchh-hhcCCCCCEEEccCCCCCccch-hhcCCCCCCEEEccCCcCccCcc
Q psy2947         112 TDNCLQNASIPFT-LTFCKNLTHLYLDNNLLDALPG-FLLSMPQLDTVYRHGNHNYFKST  169 (441)
Q Consensus       112 ~~n~l~~~~~p~~-~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~l~~N~~~~~~~  169 (441)
                      ++|+|+  .+|.. +..+++|++|+|++|+|+.+|. .|..+++|+.|+|++|++.+.+.
T Consensus        65 s~N~l~--~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           65 NSNKLT--AIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             CCCCCC--ccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            999998  67765 5899999999999999999985 48899999999999999887763

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.66  E-value=4.5e-17  Score=167.48  Aligned_cols=157  Identities=11%  Similarity=0.126  Sum_probs=137.7

Q ss_pred             CCCcccEEeccCC---C------------------cCcccC--CCCCCCEEEccCCCCC-cCCcCccCCCCCcEEEccCC
Q psy2947          59 YFSHAFLLSLSYT---P------------------IGRRIF--KCDTVEVLSLKSNSLT-SLPPDIGRLTNLRVLCLTDN  114 (441)
Q Consensus        59 ~l~~L~~l~l~~n---~------------------i~~~~~--~l~~L~~L~l~~n~l~-~lp~~~~~l~~L~~L~l~~n  114 (441)
                      .+++|+.|+|++|   .                  +|..++  ++++|++|+|++|.+. .+|..|+.+++|++|++++|
T Consensus       204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  283 (636)
T 4eco_A          204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN  283 (636)
T ss_dssp             GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred             cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence            5789999999999   3                  888888  9999999999999987 89999999999999999999


Q ss_pred             c-CCCC-CCchhhhcC------CCCCEEEccCCCCCccch--hhcCCCCCCEEEccCCcCccCccccccccccccccccc
Q psy2947         115 C-LQNA-SIPFTLTFC------KNLTHLYLDNNLLDALPG--FLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRST  184 (441)
Q Consensus       115 ~-l~~~-~~p~~~~~l------~~L~~L~l~~n~l~~lp~--~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l  184 (441)
                      + ++ | .+|..++.+      ++|++|++++|+++.+|.  .++.+++|+.|++++|.+         .+.+| .+..+
T Consensus       284 ~~l~-~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l---------~g~ip-~~~~l  352 (636)
T 4eco_A          284 RGIS-GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQL---------EGKLP-AFGSE  352 (636)
T ss_dssp             TTSC-HHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCC---------EEECC-CCEEE
T ss_pred             CCCc-cccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcC---------ccchh-hhCCC
Confidence            8 88 6 799998887      999999999999999998  999999999999999994         34566 67777


Q ss_pred             chhHHH-HhhcccccCCchhhhhhh-hcccccccccCCCCCCCchh
Q psy2947         185 STRDEV-LRKQKKLHQPSRLQDLAV-QSVIASKENFFEPGLFPGPL  228 (441)
Q Consensus       185 ~~~~~~-l~~~~~~~~p~~l~~l~~-l~~l~l~~n~~~~~~~p~~~  228 (441)
                      +.+..+ +.+|.+..+|..+..++. |+.|++++|.+.  .+|..+
T Consensus       353 ~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~--~lp~~~  396 (636)
T 4eco_A          353 IKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK--YIPNIF  396 (636)
T ss_dssp             EEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS--SCCSCC
T ss_pred             CCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc--ccchhh
Confidence            777777 888888888888888888 999999988776  377654

>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A

Probab=99.66  E-value=5.8e-16  Score=121.11  Aligned_cols=100  Identities=18%  Similarity=0.325  Sum_probs=90.4

Q ss_pred             CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh---CCCCCH
Q psy2947         330 EDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW---GEGLSS  406 (441)
Q Consensus       330 ~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~---~~~l~~  406 (441)
                      ..+.+++..+|+.+|  ++|.|+++||..++...   ....+.++.+|+.+|+|++|+|+.+||+.++..+   |.++++
T Consensus         6 ~~~~~ei~~~~~~~D--~~g~i~~~eF~~~~~~~---~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~   80 (109)
T 3fs7_A            6 ILSAKDIESALSSCQ--AADSFNYKSFFSTVGLS---SKTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTS   80 (109)
T ss_dssp             TSCHHHHHHHHHHTC--STTCCCHHHHHHHHTCT---TCCHHHHHHHHHHHSTTCSSSBCHHHHHTTGGGTCTTSCCCCH
T ss_pred             cCCHHHHHHHHHhcC--CCCcCcHHHHHHHHhcC---CCcHHHHHHHHHHHCCCCCCeEeHHHHHHHHHHHhcccccCCH
Confidence            356788899999998  79999999999988642   3446789999999999999999999999999998   888999


Q ss_pred             HHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         407 KEVDQIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       407 ~~~~~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      ++++.+++.+|.|++|.|+|+||++++.
T Consensus        81 ~~~~~~~~~~D~~~dg~i~~~EF~~~~~  108 (109)
T 3fs7_A           81 AETKAFLAAGDTDGDGKIGVEEFQSLVK  108 (109)
T ss_dssp             HHHHHHHHHHCTTCSSSBCHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCCCCcCcHHHHHHHHh
Confidence            9999999999999999999999999885

>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}

Probab=99.66  E-value=5.4e-17  Score=132.19  Aligned_cols=101  Identities=17%  Similarity=0.278  Sum_probs=67.6

Q ss_pred             HHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHH
Q psy2947         335 EVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWG-EGLSSKEVDQIF  413 (441)
Q Consensus       335 ~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~-~~l~~~~~~~l~  413 (441)
                      ..+.+|+.+|.|++|.|+++||..++..........+.++.+|+.+|++++|+|+.+||+.+++.+| ..+++++++.++
T Consensus         4 ~~~~l~~~~D~d~~G~I~~~EF~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~e~~~~~   83 (135)
T 3h4s_E            4 TEKSMLLETTSTTKMETKYEDMLPVMAEKMDVEEFVSELCKGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQGMV   83 (135)
T ss_dssp             ---------------CCCC-----------CHHHHHHHHHHHHHHHSBTTTTBBCHHHHHHHGGGGTCCCCCHHHHHHHH
T ss_pred             hHHHHHHHHcCCCCCcEeHHHHHHHHHHHccccchHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence            3567889999999999999999998876433333356789999999999999999999999999999 499999999999


Q ss_pred             HHhCCCCCCceeHHHHHHHHhc
Q psy2947         414 REANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       414 ~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      +.+|.|++|.|+|+||+.+|.+
T Consensus        84 ~~~D~d~dG~I~~~EF~~~~~~  105 (135)
T 3h4s_E           84 REGDLDGDGALNQTEFCVLMVR  105 (135)
T ss_dssp             HHHCSSCSSSBCHHHHHHHHHH
T ss_pred             HHhCCCCCCCCcHHHHHHHHHH
Confidence            9999999999999999999864

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.66  E-value=9e-16  Score=145.07  Aligned_cols=124  Identities=22%  Similarity=0.357  Sum_probs=100.0

Q ss_pred             cCCCCCccCCC-CccCCCC---CCCC-CCcccEEeccCCCc----CcccCCCCCCCEEEccCCCCCcC-CcCccCCCCCc
Q psy2947          38 ACQRNCSLEVG-GICSHIW---IPQY-FSHAFLLSLSYTPI----GRRIFKCDTVEVLSLKSNSLTSL-PPDIGRLTNLR  107 (441)
Q Consensus        38 ~C~~~c~~~~~-~~c~~~~---~~~~-l~~L~~l~l~~n~i----~~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~  107 (441)
                      .||..|.|... +.|...+   +|.. .++|+.|++++|.+    |..+..+++|++|+|++|+++.+ |..|..+++|+
T Consensus        26 ~cp~~c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  105 (332)
T 2ft3_A           26 MCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQ  105 (332)
T ss_dssp             CCCSSCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCC
T ss_pred             CCCCCCcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCC
Confidence            49999988543 5566533   3332 36899999999954    34678899999999999999966 55699999999


Q ss_pred             EEEccCCcCCCCCCchhhhcCCCCCEEEccCCCCCccc-hhhcCCCCCCEEEccCCcCc
Q psy2947         108 VLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGNHNY  165 (441)
Q Consensus       108 ~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~N~~~  165 (441)
                      +|++++|.++  .+|..+.  ++|++|++++|+++.+| ..+..+++|+.|++++|.+.
T Consensus       106 ~L~L~~n~l~--~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~  160 (332)
T 2ft3_A          106 KLYISKNHLV--EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE  160 (332)
T ss_dssp             EEECCSSCCC--SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred             EEECCCCcCC--ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence            9999999998  7887665  78999999999998887 45888999999999998874

>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4

Probab=99.66  E-value=1.1e-15  Score=119.39  Aligned_cols=100  Identities=19%  Similarity=0.378  Sum_probs=90.3

Q ss_pred             CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh---CCCCCHH
Q psy2947         331 DIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW---GEGLSSK  407 (441)
Q Consensus       331 ~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~---~~~l~~~  407 (441)
                      .+.++++.+|+.+|.  +|.|+++||..++...   ....+.++.+|+.+|+|++|.|+.+||+.+++.+   |..++++
T Consensus         6 ~s~~ei~~~~~~~d~--~g~i~~~eF~~~~~~~---~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~g~~~~~~   80 (109)
T 5pal_A            6 LKADDINKAISAFKD--PGTFDYKRFFHLVGLK---GKTDAQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDT   80 (109)
T ss_dssp             SCHHHHHHHHHHTCS--TTCCCHHHHHHHHTCT---TCCHHHHHHHHHHHCTTCSSEECHHHHHTHHHHHCTTCCCCCHH
T ss_pred             CCHHHHHHHHHHhCC--CCcCcHHHHHHHHhhc---cCcHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHcCCCCCHH
Confidence            567888999999997  8999999999988642   3446789999999999999999999999999998   8999999


Q ss_pred             HHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         408 EVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       408 ~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      +++.+++.+|.|++|.|+|+||+.+|.+
T Consensus        81 ~~~~~~~~~D~~~dg~i~~~eF~~~~~~  108 (109)
T 5pal_A           81 ETKALLAAGDSDHDGKIGADEFAKMVAQ  108 (109)
T ss_dssp             HHHHHHHHHCTTCSSSEEHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCcCcHHHHHHHHHh
Confidence            9999999999999999999999998864

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.65  E-value=1e-15  Score=144.59  Aligned_cols=123  Identities=22%  Similarity=0.321  Sum_probs=82.2

Q ss_pred             cCCCCCccCCC-CccCCCC---CCCC-CCcccEEeccCCCc---C-cccCCCCCCCEEEccCCCCCcC-CcCccCCCCCc
Q psy2947          38 ACQRNCSLEVG-GICSHIW---IPQY-FSHAFLLSLSYTPI---G-RRIFKCDTVEVLSLKSNSLTSL-PPDIGRLTNLR  107 (441)
Q Consensus        38 ~C~~~c~~~~~-~~c~~~~---~~~~-l~~L~~l~l~~n~i---~-~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~  107 (441)
                      .||..|.|... +.|...+   +|.. .++|+.|++++|.|   + ..+..+++|++|+|++|.++.+ |..|..+++|+
T Consensus        24 ~cp~~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  103 (330)
T 1xku_A           24 VCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE  103 (330)
T ss_dssp             CCCTTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred             CCCCCCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCC
Confidence            49999988544 5566532   3332 35788889888844   3 3577788888888888888866 66688888888


Q ss_pred             EEEccCCcCCCCCCchhhhcCCCCCEEEccCCCCCccc-hhhcCCCCCCEEEccCCcC
Q psy2947         108 VLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGNHN  164 (441)
Q Consensus       108 ~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~N~~  164 (441)
                      +|++++|.++  .+|..+.  ++|++|++++|.++.++ ..+..+++|+.|++++|.+
T Consensus       104 ~L~Ls~n~l~--~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  157 (330)
T 1xku_A          104 RLYLSKNQLK--ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL  157 (330)
T ss_dssp             EEECCSSCCS--BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCC
T ss_pred             EEECCCCcCC--ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcC
Confidence            8888888886  6665443  45666666666665554 3345555555555555544

>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A

Probab=99.65  E-value=1.7e-15  Score=118.36  Aligned_cols=100  Identities=18%  Similarity=0.319  Sum_probs=89.5

Q ss_pred             CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh---CCCCCHH
Q psy2947         331 DIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW---GEGLSSK  407 (441)
Q Consensus       331 ~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~---~~~l~~~  407 (441)
                      .+.+++..+|+.+|  ++|.|+++||..++...   ....+.++.+|+.+|.+++|+|+.+||+++++.+   |.+++++
T Consensus         6 ~t~~e~~~~~~~~d--~~g~i~~~eF~~~~~~~---~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~   80 (109)
T 1rwy_A            6 LSAEDIKKAIGAFT--AADSFDHKKFFQMVGLK---KKSADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAK   80 (109)
T ss_dssp             SCHHHHHHHHHTTC--STTCCCHHHHHHHHTGG---GSCHHHHHHHHHHHSTTCSSEECHHHHHTHHHHHCTTCCCCCHH
T ss_pred             CCHHHHHHHHHHcC--CCCcEeHHHHHHHHhcC---cchHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHHhccCCCCCHH
Confidence            45678888888898  88999999999988532   2346789999999999999999999999999998   7889999


Q ss_pred             HHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         408 EVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       408 ~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      +++.+++.+|.|++|.|+|+||+.++.+
T Consensus        81 ~~~~~~~~~D~~~dg~i~~~eF~~~~~~  108 (109)
T 1rwy_A           81 ETKTLMAAGDKDGDGKIGVEEFSTLVAE  108 (109)
T ss_dssp             HHHHHHHHHCTTCSSSEEHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCCCCcCCHHHHHHHHHc
Confidence            9999999999999999999999998864

>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4

Probab=99.65  E-value=2e-15  Score=117.95  Aligned_cols=100  Identities=16%  Similarity=0.283  Sum_probs=89.5

Q ss_pred             CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh---CCCCCH
Q psy2947         330 EDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW---GEGLSS  406 (441)
Q Consensus       330 ~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~---~~~l~~  406 (441)
                      ..+.+++..+|+.+|  ++|.|+++||..++...   ....+.++.+|+.+|.+++|.|+.+||+++++.+   |.++++
T Consensus         6 ~~~~~e~~~~~~~~d--~~g~i~~~eF~~~~~~~---~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~   80 (109)
T 1bu3_A            6 ILADADVAAALKACE--AADSFNYKAFFAKVGLT---AKSADDIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTD   80 (109)
T ss_dssp             SSCHHHHHHHHHHTC--STTCCCHHHHHHHHTGG---GSCHHHHHHHHHHHCTTCSSSEEHHHHHTHHHHHSTTCCCCCH
T ss_pred             cCCHHHHHHHHHHhC--CCCcCcHHHHHHHHHcC---hhhHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHcccCCCCCH
Confidence            456788888899998  88999999999987543   2346789999999999999999999999999999   788999


Q ss_pred             HHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         407 KEVDQIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       407 ~~~~~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      ++++.+++.+|.|++|.|+|+||+.++.
T Consensus        81 ~~~~~~~~~~D~~~dg~i~~~eF~~~~~  108 (109)
T 1bu3_A           81 AETKAFLKAGDSDGDGAIGVDEWAALVK  108 (109)
T ss_dssp             HHHHHHHHHHCTTCSSEECHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCCCCcEeHHHHHHHHh
Confidence            9999999999999999999999999875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.64  E-value=9.6e-17  Score=168.68  Aligned_cols=177  Identities=12%  Similarity=0.114  Sum_probs=144.8

Q ss_pred             CCCcccEEeccCC---C------------------cCcccC--CCCCCCEEEccCCCCC-cCCcCccCCCCCcEEEccCC
Q psy2947          59 YFSHAFLLSLSYT---P------------------IGRRIF--KCDTVEVLSLKSNSLT-SLPPDIGRLTNLRVLCLTDN  114 (441)
Q Consensus        59 ~l~~L~~l~l~~n---~------------------i~~~~~--~l~~L~~L~l~~n~l~-~lp~~~~~l~~L~~L~l~~n  114 (441)
                      .+++|+.|+|++|   .                  ||..++  ++++|++|+|++|.+. .+|..|+.+++|+.|++++|
T Consensus       446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N  525 (876)
T 4ecn_A          446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN  525 (876)
T ss_dssp             GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred             cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence            5789999999999   3                  777777  9999999999999977 89999999999999999999


Q ss_pred             c-CCCC-CCchhhhcCC-------CCCEEEccCCCCCccch--hhcCCCCCCEEEccCCcCccCcccccccccccccccc
Q psy2947         115 C-LQNA-SIPFTLTFCK-------NLTHLYLDNNLLDALPG--FLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRS  183 (441)
Q Consensus       115 ~-l~~~-~~p~~~~~l~-------~L~~L~l~~n~l~~lp~--~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~  183 (441)
                      + ++ | .+|..++.++       +|++|+|++|+|+.+|.  .++++++|+.|++++|.+.          .+| .+..
T Consensus       526 ~~ls-g~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~----------~lp-~~~~  593 (876)
T 4ecn_A          526 RGIS-AAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR----------HLE-AFGT  593 (876)
T ss_dssp             TTSC-HHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC----------BCC-CCCT
T ss_pred             CCcc-cccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc----------cch-hhcC
Confidence            8 87 6 7998887776       99999999999999998  9999999999999999963          345 6777


Q ss_pred             cchhHHH-HhhcccccCCchhhhhhh-hcccccccccCCCCCCCchhhhHHH--hhhcCCcccccccCCC
Q psy2947         184 TSTRDEV-LRKQKKLHQPSRLQDLAV-QSVIASKENFFEPGLFPGPLVDYIA--REYNQYHVCHYCNSAE  249 (441)
Q Consensus       184 l~~~~~~-l~~~~~~~~p~~l~~l~~-l~~l~l~~n~~~~~~~p~~~~~~l~--~~~~~~~~~~~~~~~~  249 (441)
                      ++.+..+ +.+|.+..+|..+..++. |+.|++++|.+.  .+|..+...-.  .....+..|...+..+
T Consensus       594 L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~--~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip  661 (876)
T 4ecn_A          594 NVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK--YIPNIFNAKSVYVMGSVDFSYNKIGSEGR  661 (876)
T ss_dssp             TSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC--SCCSCCCTTCSSCEEEEECCSSCTTTTSS
T ss_pred             CCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC--cCchhhhccccCCCCEEECcCCcCCCccc
Confidence            7777777 888888889988999998 999999999876  47765433111  2334444555444433

>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal specific guanylate cyclase activator; 2.40A {Bos taurus} SCOP: a.39.1.5

Probab=99.64  E-value=6.4e-16  Score=134.00  Aligned_cols=151  Identities=15%  Similarity=0.262  Sum_probs=112.0

Q ss_pred             hHHHHHhhhccc---cCCCccCHHHHHHHHHHcCCCc-CHHHHHHHH----HhCCCcccHHHHHHHHHhhcCCCCCHHHH
Q psy2947         265 YLEFRECFFLFA---RNGTIKTLDELSVIMRSLGMSP-TIAELKKYL----AEKGGKLSFPDFLKVMHTHSKAEDIPKEV  336 (441)
Q Consensus       265 ~~~l~~~f~~~d---~~G~i~~~~el~~~~~~~~~~~-~~~~~~~~~----~~~~g~i~~~ef~~~~~~~~~~~~~~~~~  336 (441)
                      ..+++++|..+|   .+|.| +.+++..+++.++... ....+..++    .+++|.|+++||..++..... ....+.+
T Consensus        24 ~~~i~~~f~~fd~~~~~G~i-~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~Ef~~~~~~~~~-~~~~~~~  101 (193)
T 1bjf_A           24 EHEIQEWYKGFLRDCPSGHL-SMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFIIALSVTSR-GKLEQKL  101 (193)
T ss_dssp             HHHHHHHHHHHHHHSTTSEE-EHHHHHHHHTTTSSSSCCHHHHHHHHHHHCSSCSSEEEHHHHHHHHHHHTS-SCHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCCc-CHHHHHHHHHHhcCcCChHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHcC-CCHHHHH
Confidence            345556666666   46889 8999999999887644 344455554    478999999999999987643 3557889


Q ss_pred             HHHHHhhcCCCCCcccHHHHHHHHHhhcc--C---C------CChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCC
Q psy2947         337 VDAFKAADTTKSGKLSFPDFLKVMHTHSK--A---E------DIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLS  405 (441)
Q Consensus       337 ~~~f~~~D~d~~g~i~~~ef~~~~~~~~~--~---~------~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~  405 (441)
                      +.+|+.+|.|++|.|+++||..++.....  +   .      ...+.+..+|+.+|.|++|.|+++||++++..      
T Consensus       102 ~~~f~~~D~d~~G~I~~~E~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~------  175 (193)
T 1bjf_A          102 KWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEEFIRGAKS------  175 (193)
T ss_dssp             HHHHHHHCTTCSSCEEHHHHHHHHHHHHTTCCCTTTSCGGGSSHHHHHHHHHHHSCTTCSSEECHHHHHHHHHH------
T ss_pred             HHHHhhcCCCCCCeECHHHHHHHHHHHHHHhccccCCCcccccHHHHHHHHHHHhCCCCCCeEeHHHHHHHHhc------
Confidence            99999999999999999999998876411  1   1      12356899999999999999999999999964      


Q ss_pred             HHHHHHHHHHhCCCCCCce
Q psy2947         406 SKEVDQIFREANVTMNSKV  424 (441)
Q Consensus       406 ~~~~~~l~~~~d~d~dg~i  424 (441)
                      +.++..+| .+|.|++|.|
T Consensus       176 ~~~~~~~~-~~D~~~dG~i  193 (193)
T 1bjf_A          176 DPSIVRLL-QCDPSSAGQF  193 (193)
T ss_dssp             CTHHHHTT-CC--------
T ss_pred             CHHHHHHh-ccCCCCCCCC
Confidence            35678889 9999999976

>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}

Probab=99.64  E-value=2.5e-16  Score=137.12  Aligned_cols=139  Identities=15%  Similarity=0.263  Sum_probs=109.0

Q ss_pred             eecccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHH----hCCCcccHHHHHHHHHhhcCCCCC
Q psy2947         259 FTFKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLA----EKGGKLSFPDFLKVMHTHSKAEDI  332 (441)
Q Consensus       259 ~l~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~~~~~~  332 (441)
                      .++..++..+++.|..+|.+  |.| +.+|+..+++.++..++..++..++.    +++|.|+++||+.++..... ...
T Consensus        50 ~l~~~e~~~l~~~F~~~D~d~~G~I-s~~El~~~l~~~g~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~~~~~~~-~~~  127 (197)
T 3pm8_A           50 HLCDVEINNLRNIFIALDVDNSGTL-SSQEILDGLKKIGYQKIPPDIHQVLRDIDSNASGQIHYTDFLAATIDKQT-YLK  127 (197)
T ss_dssp             HCCHHHHHHHHHHHHHHCTTCSSEE-CHHHHHHHHHHHC----CHHHHHHHHC-------CEEHHHHHHTTCCHHH-HCS
T ss_pred             HCCHHHHHHHHHHHHHHCCCCCCcC-CHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHHHh-hhh
Confidence            45678899999999999976  888 89999999999988888888877775    68899999999997754321 245


Q ss_pred             HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhc-cCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHS-KAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~-~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      .+.++.+|+.+|.|++|.|+.+||..++.... .....++.+..+|+.+|.|++|.|+++||..+|+.
T Consensus       128 ~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~~~~~~~~~~l~~~~D~d~dG~Is~~EF~~~l~~  195 (197)
T 3pm8_A          128 KEVCLIPFKFFDIDGNGKISVEELKRIFGRDDIENPLIDKAIDSLLQEVDLNGDGEIDFHEFMLMMSK  195 (197)
T ss_dssp             HHHHHHHHHHHCTTCSSEECHHHHHHHHC----CCHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHC
T ss_pred             HHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcccCCCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHc
Confidence            67899999999999999999999999997652 12234578999999999999999999999999864

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.64  E-value=3.7e-16  Score=149.02  Aligned_cols=151  Identities=17%  Similarity=0.195  Sum_probs=122.2

Q ss_pred             CCcccEEeccCCCc---Cc-ccCCCCCCCEEEccCCCCCcCCc-CccCCCCCcEEEccCCcCCCCCCchh-hhcCCCCCE
Q psy2947          60 FSHAFLLSLSYTPI---GR-RIFKCDTVEVLSLKSNSLTSLPP-DIGRLTNLRVLCLTDNCLQNASIPFT-LTFCKNLTH  133 (441)
Q Consensus        60 l~~L~~l~l~~n~i---~~-~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~~~~p~~-~~~l~~L~~  133 (441)
                      .++|+.|++++|.+   |. .+..+++|++|++++|+++.+++ .|..+++|++|++++|.++  .+|.. +..+++|++
T Consensus        51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~  128 (353)
T 2z80_A           51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS--NLSSSWFKPLSSLTF  128 (353)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS--SCCHHHHTTCTTCSE
T ss_pred             cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC--cCCHhHhCCCccCCE
Confidence            35899999999954   33 67889999999999999997754 5999999999999999998  67765 799999999


Q ss_pred             EEccCCCCCccch--hhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccC-Cchhhhhhhh
Q psy2947         134 LYLDNNLLDALPG--FLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQ-PSRLQDLAVQ  209 (441)
Q Consensus       134 L~l~~n~l~~lp~--~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~-p~~l~~l~~l  209 (441)
                      |++++|+++.+|.  .+..+++|+.|++++|..        +....+..+..++.+..+ +.+|.+..+ |..+..+++|
T Consensus       129 L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~--------~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  200 (353)
T 2z80_A          129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDT--------FTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV  200 (353)
T ss_dssp             EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSS--------CCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred             EECCCCCCcccCchhhhccCCCCcEEECCCCcc--------ccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccC
Confidence            9999999999986  788999999999999952        111224456666666666 677776554 6778888888


Q ss_pred             cccccccccCC
Q psy2947         210 SVIASKENFFE  220 (441)
Q Consensus       210 ~~l~l~~n~~~  220 (441)
                      +.+++++|.+.
T Consensus       201 ~~L~l~~n~l~  211 (353)
T 2z80_A          201 SHLILHMKQHI  211 (353)
T ss_dssp             EEEEEECSCST
T ss_pred             CeecCCCCccc
Confidence            88888888653

>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E

Probab=99.64  E-value=1.9e-15  Score=129.89  Aligned_cols=138  Identities=13%  Similarity=0.156  Sum_probs=113.3

Q ss_pred             ecccchHHHHHhhhccccCCCccCHHHHHHHHHHcCCC-cCHHHHHHHHH----hCCCcccHHHHHHHHHhhcCCCCCHH
Q psy2947         260 TFKTPYLEFRECFFLFARNGTIKTLDELSVIMRSLGMS-PTIAELKKYLA----EKGGKLSFPDFLKVMHTHSKAEDIPK  334 (441)
Q Consensus       260 l~~~~~~~l~~~f~~~d~~G~i~~~~el~~~~~~~~~~-~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~~~~~~~~  334 (441)
                      ++..++..+.+.|..+|.+|.| +..++..+++.++.. .+..++..++.    +++|.|+++||..++..... ....+
T Consensus        15 ~s~~~i~~l~~~fd~~d~~G~i-~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~Ef~~~~~~~~~-~~~~~   92 (183)
T 1s6c_A           15 FTKRELQVLYRGFKNEXPSGVV-NEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLR-GTVHE   92 (183)
T ss_dssp             CCHHHHHHHHHHHHHHCTTSEE-CHHHHHHHHHHHSTTSCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHH-CCHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCcC-CHHHHHHHHHHHcCCCChHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHcC-CCHHH
Confidence            4567788888888777788999 899999999998765 67777776664    68999999999999986543 34567


Q ss_pred             HHHHHHHhhcCCCCCcccHHHHHHHHHhhc---c--------CCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         335 EVVDAFKAADTTKSGKLSFPDFLKVMHTHS---K--------AEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       335 ~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~---~--------~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      .++.+|+.+|.|++|.|+++||..++....   +        .....+.+..+|+.+|.|++|.|+++||..++..
T Consensus        93 ~~~~~f~~~D~d~~G~i~~~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~i~~~Ef~~~~~~  168 (183)
T 1s6c_A           93 KLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESXQE  168 (183)
T ss_dssp             HHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHHTC-----------CHHHHHHHHHHHCTTCSSEECHHHHHHHTTS
T ss_pred             HHHHHHHHhCCCCCCeEcHHHHHHHHHHHHHHhccccCcCccHHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHhc
Confidence            899999999999999999999999987651   1        1122478999999999999999999999999854

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.63  E-value=6.9e-16  Score=139.79  Aligned_cols=160  Identities=24%  Similarity=0.265  Sum_probs=129.3

Q ss_pred             CCccCCCCccCCCCCCCCCCcccEEeccCC---CcCcccCCCCCCCEEEccCCCCCcCCcC-ccCCCCCcEEEccCCcCC
Q psy2947          42 NCSLEVGGICSHIWIPQYFSHAFLLSLSYT---PIGRRIFKCDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQ  117 (441)
Q Consensus        42 ~c~~~~~~~c~~~~~~~~l~~L~~l~l~~n---~i~~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~  117 (441)
                      .|.-|.|..|.        ...+.++++++   .+|..+.  ++|+.|+|++|.++.+++. |..+++|++|++++|.++
T Consensus         3 ~Cp~~~gC~C~--------~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~   72 (251)
T 3m19_A            3 TCETVTGCTCN--------EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ   72 (251)
T ss_dssp             -CHHHHSSEEE--------GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred             cCCCCCceEcC--------CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC
Confidence            35444567774        35678899888   5565554  6899999999999977664 999999999999999998


Q ss_pred             CCCCchhhhcCCCCCEEEccCCCCCccc-hhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-Hhhcc
Q psy2947         118 NASIPFTLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQK  195 (441)
Q Consensus       118 ~~~~p~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~  195 (441)
                       +..|..+..+++|++|+|++|+|+.+| ..|..+++|++|+|++|.+....         +..+..++.+..+ +.+|.
T Consensus        73 -~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---------~~~~~~l~~L~~L~Ls~N~  142 (251)
T 3m19_A           73 -TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLP---------SGVFDRLTKLKELRLNTNQ  142 (251)
T ss_dssp             -CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC---------TTTTTTCTTCCEEECCSSC
T ss_pred             -ccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcC---------hhHhccCCcccEEECcCCc
Confidence             555556899999999999999999887 66789999999999999964322         3345667777777 88899


Q ss_pred             cccCCc-hhhhhhhhcccccccccCCC
Q psy2947         196 KLHQPS-RLQDLAVQSVIASKENFFEP  221 (441)
Q Consensus       196 ~~~~p~-~l~~l~~l~~l~l~~n~~~~  221 (441)
                      +..+|+ .+..+++|+.|++++|.+..
T Consensus       143 l~~~~~~~~~~l~~L~~L~L~~N~l~~  169 (251)
T 3m19_A          143 LQSIPAGAFDKLTNLQTLSLSTNQLQS  169 (251)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCccCHHHcCcCcCCCEEECCCCcCCc
Confidence            988886 68899999999999998764

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.63  E-value=6.4e-16  Score=152.54  Aligned_cols=153  Identities=18%  Similarity=0.153  Sum_probs=113.4

Q ss_pred             CcCCCCCccCCC-CccCCCC---CCCCCCcccEEeccCCCc----CcccCCCCCCCEEEccCCCCC-cCCc-CccCCCCC
Q psy2947          37 TACQRNCSLEVG-GICSHIW---IPQYFSHAFLLSLSYTPI----GRRIFKCDTVEVLSLKSNSLT-SLPP-DIGRLTNL  106 (441)
Q Consensus        37 ~~C~~~c~~~~~-~~c~~~~---~~~~l~~L~~l~l~~n~i----~~~~~~l~~L~~L~l~~n~l~-~lp~-~~~~l~~L  106 (441)
                      .+|+..|.|... +.|...+   +|...++|+.|+|++|.|    |..+..+++|++|+|++|.+. .+|+ .|..+++|
T Consensus         2 ~p~~~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L   81 (455)
T 3v47_A            2 DPGTSECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSL   81 (455)
T ss_dssp             -----CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTC
T ss_pred             CCccceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccC
Confidence            469999998542 7787643   455457899999999954    566888999999999999987 6654 49999999


Q ss_pred             cEEEccCCcCCCCCCchhhhcCCCCCEEEccCCCCCc-cch--hhcCCCCCCEEEccCCcCccCccccccccccccc-cc
Q psy2947         107 RVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDA-LPG--FLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHAR-IR  182 (441)
Q Consensus       107 ~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~-lp~--~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~-l~  182 (441)
                      ++|++++|.++ +..|..+.++++|++|++++|+++. +|.  .+..+++|++|++++|.+...         .|.. +.
T Consensus        82 ~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~---------~~~~~~~  151 (455)
T 3v47_A           82 IILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI---------QPASFFL  151 (455)
T ss_dssp             CEEECTTCTTC-EECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSC---------CCCGGGG
T ss_pred             CEEeCCCCccC-ccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCcc---------CcccccC
Confidence            99999999998 5557788999999999999999975 443  388899999999999986432         2333 55


Q ss_pred             ccchhHHH-HhhcccccC
Q psy2947         183 STSTRDEV-LRKQKKLHQ  199 (441)
Q Consensus       183 ~l~~~~~~-l~~~~~~~~  199 (441)
                      .++.+..+ +.+|.+..+
T Consensus       152 ~l~~L~~L~L~~n~l~~~  169 (455)
T 3v47_A          152 NMRRFHVLDLTFNKVKSI  169 (455)
T ss_dssp             GCTTCCEEECTTCCBSCC
T ss_pred             CCCcccEEeCCCCccccc
Confidence            55555555 666666443

>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport, ionic channel, membrane, PO potassium channel, potassium transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A

Probab=99.63  E-value=3.1e-15  Score=133.45  Aligned_cols=152  Identities=16%  Similarity=0.182  Sum_probs=122.0

Q ss_pred             eecccchHHHHHhhhccccCCCccCHHHHHHHHHHcCC-CcCHHHHHHHHH----hCCCcccHHHHHHHHHhhcCCCCCH
Q psy2947         259 FTFKTPYLEFRECFFLFARNGTIKTLDELSVIMRSLGM-SPTIAELKKYLA----EKGGKLSFPDFLKVMHTHSKAEDIP  333 (441)
Q Consensus       259 ~l~~~~~~~l~~~f~~~d~~G~i~~~~el~~~~~~~~~-~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~~~~~~~  333 (441)
                      .++..++..+.+.|...+.+|.| +.+++..++..+.. ......+..++.    +++|.|+++||..++..... ....
T Consensus        60 ~~s~~ei~~l~~~F~~~d~~G~I-s~~ef~~~l~~~~~~~~~~~~~~~lf~~~D~d~~G~I~~~Ef~~~l~~~~~-~~~~  137 (229)
T 3dd4_A           60 KFTKKELQILYRGFKNECPSGVV-NEETFKEIYSQFFPQGDSTTYAHFLFNAFDTDHNGAVSFEDFIKGLSILLR-GTVQ  137 (229)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSCCC-CHHHHHHHHHHHSCSSSHHHHHHHHHHTTCSSCCSSCCHHHHHHHHHHHHH-SCHH
T ss_pred             CCCHHHHHHHHHHHHhhCCCCCc-CHHHHHHHHHHHCCCCCcHHHHHHHHHHcCCCCCCeEeHHHHHHHHHHHcC-CChH
Confidence            35677888899999888889999 89999999998543 445555556664    68999999999999986643 3456


Q ss_pred             HHHHHHHHhhcCCCCCcccHHHHHHHHHhhc-----------cCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCC
Q psy2947         334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTHS-----------KAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGE  402 (441)
Q Consensus       334 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~-----------~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~  402 (441)
                      +.++.+|+.+|.|++|.|+++||..++....           ......+.++.+|+.+|.|+||.|+++||.+++..   
T Consensus       138 ~~l~~~F~~~D~d~dG~Is~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~Is~~EF~~~~~~---  214 (229)
T 3dd4_A          138 EKLNWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMDKNKDGVVTIDEFIESCQK---  214 (229)
T ss_dssp             HHHHHHHHHHCTTCSSCCBHHHHHHHHHHHHHHCC-----------CCTHHHHHHHHHCSSCSSBCCHHHHHHHHHT---
T ss_pred             HHHHHHHHHhCCCCCCeECHHHHHHHHHHHHHHhccccCCCcchhhHHHHHHHHHHHhcCCCCCcEeHHHHHHHHHh---
Confidence            8899999999999999999999999988652           22334578999999999999999999999999974   


Q ss_pred             CCCHHHHHHHHHHhCC
Q psy2947         403 GLSSKEVDQIFREANV  418 (441)
Q Consensus       403 ~l~~~~~~~l~~~~d~  418 (441)
                         ...+..+|+.+|.
T Consensus       215 ---~~~~~~~~~~~D~  227 (229)
T 3dd4_A          215 ---DENIMRSMQLFEN  227 (229)
T ss_dssp             ---CHHHHHHHHHHTT
T ss_pred             ---CHHHHHHHHhccc
Confidence               3567778887763

>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A

Probab=99.63  E-value=1.7e-15  Score=118.21  Aligned_cols=99  Identities=18%  Similarity=0.276  Sum_probs=88.7

Q ss_pred             CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh---CCCCCHH
Q psy2947         331 DIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW---GEGLSSK  407 (441)
Q Consensus       331 ~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~---~~~l~~~  407 (441)
                      .+.+++..+|+.+|  ++|.|+++||..++...   ....+.++.+|+.+|.+++|+|+.+||+.+++.+   |.+++++
T Consensus         6 ~~~~e~~~l~~~~d--~~g~i~~~eF~~~~~~~---~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~   80 (108)
T 2pvb_A            6 LKDADVAAALAACS--AADSFKHKEFFAKVGLA---SKSLDDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDA   80 (108)
T ss_dssp             SCHHHHHHHHHHTC--STTCCCHHHHHHHHTGG---GSCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTSCCCCHH
T ss_pred             CCHHHHHHHHHHhC--CCCcCcHHHHHHHHhCC---hhHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHhccCCCCCHH
Confidence            56778888888888  78999999999988542   2346789999999999999999999999999998   7889999


Q ss_pred             HHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         408 EVDQIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       408 ~~~~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      +++.+++.+|.|++|.|+|+||+.++.
T Consensus        81 ~~~~~~~~~D~~~dg~i~~~eF~~~~~  107 (108)
T 2pvb_A           81 ETKAFLADGDKDGDGMIGVDEFAAMIK  107 (108)
T ss_dssp             HHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCcEeHHHHHHHHh
Confidence            999999999999999999999999875

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.63  E-value=1e-15  Score=157.29  Aligned_cols=152  Identities=20%  Similarity=0.225  Sum_probs=121.9

Q ss_pred             CccCCC---CCCCCCC-cccEEeccCCCc---C-cccCCCCCCCEEEccCCCCCcCCcC-ccCCCCCcEEEccCCcCCCC
Q psy2947          49 GICSHI---WIPQYFS-HAFLLSLSYTPI---G-RRIFKCDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNA  119 (441)
Q Consensus        49 ~~c~~~---~~~~~l~-~L~~l~l~~n~i---~-~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~  119 (441)
                      +.|.+.   .+|..++ +++.|+|++|.|   | ..+.++++|++|+|++|+|+.+|+. |.++++|++|+|++|+|+  
T Consensus        36 ~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~--  113 (635)
T 4g8a_A           36 YQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ--  113 (635)
T ss_dssp             EECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC--
T ss_pred             EECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC--
Confidence            568763   4566664 899999999955   3 4688999999999999999988775 999999999999999998  


Q ss_pred             CCch-hhhcCCCCCEEEccCCCCCccc-hhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-Hhhccc
Q psy2947         120 SIPF-TLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKK  196 (441)
Q Consensus       120 ~~p~-~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~  196 (441)
                      .+|. .|.++++|++|+|++|+|+.+| ..|+++++|++|++++|.+...        .+|..+..++.+..+ +.+|.+
T Consensus       114 ~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~--------~~~~~~~~l~~L~~L~L~~N~l  185 (635)
T 4g8a_A          114 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF--------KLPEYFSNLTNLEHLDLSSNKI  185 (635)
T ss_dssp             EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC--------CCCGGGGGCTTCCEEECCSSCC
T ss_pred             CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccC--------CCchhhccchhhhhhcccCccc
Confidence            6765 5799999999999999999998 5689999999999999997432        245666667666666 777777


Q ss_pred             ccC-Cchhhhhhhhc
Q psy2947         197 LHQ-PSRLQDLAVQS  210 (441)
Q Consensus       197 ~~~-p~~l~~l~~l~  210 (441)
                      ..+ |..+..+..+.
T Consensus       186 ~~~~~~~l~~L~~l~  200 (635)
T 4g8a_A          186 QSIYCTDLRVLHQMP  200 (635)
T ss_dssp             CEECGGGGHHHHTCT
T ss_pred             cccccccccchhhhh
Confidence            554 44555555444

>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein STR and functional analyses, riken structural genomics/proteomi initiative; 2.20A {Homo sapiens} PDB: 2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A 2het_A

Probab=99.62  E-value=2.4e-15  Score=131.94  Aligned_cols=125  Identities=16%  Similarity=0.176  Sum_probs=112.9

Q ss_pred             HhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCC-CCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCC
Q psy2947         308 AEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTT-KSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSG  386 (441)
Q Consensus       308 ~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d-~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G  386 (441)
                      .+++|.|+.+|+..++....   .+.+++..+|+.||.+ ++|.|+++||..++..........+.+..+|+.+|.+++|
T Consensus        10 ~~~~g~l~~~el~~~~~~~~---~~~~~i~~~f~~~d~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d~~G   86 (207)
T 2d8n_A           10 NSKSGALSKEILEELQLNTK---FSEEELCSWYQSFLKDCPTGRITQQQFQSIYAKFFPDTDPKAYAQHVFRSFDSNLDG   86 (207)
T ss_dssp             TCCTTCCCHHHHHHHHHHSS---CCHHHHHHHHHHHHHHCTTSEEEHHHHHHHHHHTCTTSCCHHHHHHHHHHHCTTCCS
T ss_pred             cccCCCCCHHHHHHHHHHcC---CCHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHhccCCCcHHHHHHHHHHhcCCCCC
Confidence            57889999999999998653   4789999999999999 7999999999999988754435578899999999999999


Q ss_pred             cccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         387 TVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       387 ~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      .|+++||..++...+...+.++++.+|+.+|.|++|.|+++||..++..
T Consensus        87 ~i~~~Ef~~~~~~~~~~~~~~~~~~~f~~~D~d~~G~I~~~E~~~~l~~  135 (207)
T 2d8n_A           87 TLDFKEYVIALHMTTAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVMA  135 (207)
T ss_dssp             EEEHHHHHHHHHHHSCSSSSTTHHHHHHHHCTTCSSEECHHHHHHHHHH
T ss_pred             eEeHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCeEcHHHHHHHHHH
Confidence            9999999999999988888899999999999999999999999998864

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.62  E-value=4.7e-16  Score=135.45  Aligned_cols=148  Identities=13%  Similarity=0.127  Sum_probs=115.5

Q ss_pred             CCCcccEEeccCCCcC--cccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEc
Q psy2947          59 YFSHAFLLSLSYTPIG--RRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL  136 (441)
Q Consensus        59 ~l~~L~~l~l~~n~i~--~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l  136 (441)
                      .+++|+.|++++|.|.  +.+..+++|++|++++|.++.++ .+..+++|++|++++|.++ +..|..+..+++|++|++
T Consensus        42 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           42 QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVT-SDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             HHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCB-GGGSCCCTTCTTCCEEEC
T ss_pred             hcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccC-cccChhhcCCCCCCEEEe
Confidence            3678889999888443  15777889999999999777654 6888899999999999987 556778888999999999


Q ss_pred             cCCCCCc-cchhhcCCCCCCEEEccCCc-CccCcccccccccccccccccchhHHH-HhhcccccCCchhhhhhhhcccc
Q psy2947         137 DNNLLDA-LPGFLLSMPQLDTVYRHGNH-NYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSRLQDLAVQSVIA  213 (441)
Q Consensus       137 ~~n~l~~-lp~~~~~l~~L~~L~l~~N~-~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~l~~l~~l~~l~  213 (441)
                      ++|+++. .|..+..+++|+.|++++|. +.          .+| .+..++.+..+ +.+|.+..++ .+..+++|+.++
T Consensus       120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~----------~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~  187 (197)
T 4ezg_A          120 SHSAHDDSILTKINTLPKVNSIDLSYNGAIT----------DIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLY  187 (197)
T ss_dssp             CSSBCBGGGHHHHTTCSSCCEEECCSCTBCC----------CCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEE
T ss_pred             cCCccCcHhHHHHhhCCCCCEEEccCCCCcc----------ccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEE
Confidence            9999975 56778889999999999997 42          233 45666666666 7788887777 788999999999


Q ss_pred             cccccCC
Q psy2947         214 SKENFFE  220 (441)
Q Consensus       214 l~~n~~~  220 (441)
                      +++|++.
T Consensus       188 l~~N~i~  194 (197)
T 4ezg_A          188 AFSQTIG  194 (197)
T ss_dssp             ECBC---
T ss_pred             eeCcccC
Confidence            9998764

>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens}

Probab=99.62  E-value=1.1e-15  Score=133.55  Aligned_cols=137  Identities=19%  Similarity=0.295  Sum_probs=113.2

Q ss_pred             eecccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHH----HhCCCcccHHHHHHHHHhhcC----
Q psy2947         259 FTFKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYL----AEKGGKLSFPDFLKVMHTHSK----  328 (441)
Q Consensus       259 ~l~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~----~~~~g~i~~~ef~~~~~~~~~----  328 (441)
                      .++..++..+++.|..+|.+  |.| +..|+..+ ..++..+.   +..++    .+++|.|+++||..++.....    
T Consensus        22 ~ls~~~~~~l~~~F~~~D~d~dG~I-~~~El~~~-~~lg~~~~---~~~l~~~~D~d~dg~i~~~EF~~~~~~~~~~~~~   96 (202)
T 2bec_A           22 GFSQASLLRLHHRFRALDRNKKGYL-SRMDLQQI-GALAVNPL---GDRIIESFFPDGSQRVDFPGFVRVLAHFRPVEDE   96 (202)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCSSCC-CHHHHHTC-HHHHHSTT---HHHHHHTTSCSSCCCCCHHHHHHHHGGGSCCCHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCCCc-CHHHHHHH-HhcCCCcc---HHHHHHHhCCCCCCcCcHHHHHHHHHHhcccchh
Confidence            56778899999999999975  889 89999998 77766555   34444    368999999999999987754    


Q ss_pred             ------------CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHH----hCCCCCCcccHHH
Q psy2947         329 ------------AEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKA----ADTTKSGTVPAKY  392 (441)
Q Consensus       329 ------------~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~----~D~~~~G~is~~e  392 (441)
                                  .....+.++.+|+.+|.|++|.|+.+||..++....+.....+++..+|+.    +|.|++|.|+++|
T Consensus        97 ~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~~g~~~~~~~~~~~~~~~~~~~D~d~dG~Is~~E  176 (202)
T 2bec_A           97 DTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVE  176 (202)
T ss_dssp             HHC-----CCCCTTSHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHSCCSCCCHHHHHHHHHHHHHHHCSSCSSSEEHHH
T ss_pred             cccccccccccccccHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCCCCcCcHHH
Confidence                        344567899999999999999999999999998773444556777777777    9999999999999


Q ss_pred             HHHHHHHh
Q psy2947         393 LKHVLVNW  400 (441)
Q Consensus       393 f~~~l~~~  400 (441)
                      |..++...
T Consensus       177 F~~~~~~~  184 (202)
T 2bec_A          177 FTKSLEKM  184 (202)
T ss_dssp             HHHTTTTS
T ss_pred             HHHHHHHh
Confidence            99998754

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.62  E-value=2.7e-15  Score=137.84  Aligned_cols=180  Identities=18%  Similarity=0.179  Sum_probs=119.7

Q ss_pred             CCCCcccEEeccCCCc---C-cccCCCCCCCEEEccCCCCCcCCc-CccCCCCCcEEEccCCcCCCCCCch-hhhcCCCC
Q psy2947          58 QYFSHAFLLSLSYTPI---G-RRIFKCDTVEVLSLKSNSLTSLPP-DIGRLTNLRVLCLTDNCLQNASIPF-TLTFCKNL  131 (441)
Q Consensus        58 ~~l~~L~~l~l~~n~i---~-~~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~~~~p~-~~~~l~~L  131 (441)
                      ..+++|+.|++++|.+   + ..+..+++|++|+|++|.++.++. .|..+++|++|++++|.+.  .++. .+..+++|
T Consensus        49 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L  126 (276)
T 2z62_A           49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA--SLENFPIGHLKTL  126 (276)
T ss_dssp             TTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCC--CSTTCCCTTCTTC
T ss_pred             ccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCcc--ccCchhcccCCCC
Confidence            3467888888888854   2 356677888888888888886654 4888888888888888887  4443 57788888


Q ss_pred             CEEEccCCCCCc--cchhhcCCCCCCEEEccCCcCccCcc--cccc----------------cccccccccccchhHHH-
Q psy2947         132 THLYLDNNLLDA--LPGFLLSMPQLDTVYRHGNHNYFKST--FMWY----------------HSDIHARIRSTSTRDEV-  190 (441)
Q Consensus       132 ~~L~l~~n~l~~--lp~~~~~l~~L~~L~l~~N~~~~~~~--~~~~----------------~~~~p~~l~~l~~~~~~-  190 (441)
                      ++|++++|.++.  +|..+..+++|+.|++++|++.....  +..+                ...++........+..+ 
T Consensus       127 ~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~  206 (276)
T 2z62_A          127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELA  206 (276)
T ss_dssp             CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEE
T ss_pred             CEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEE
Confidence            888888888865  57778888888888888887644321  1000                01112222222234444 


Q ss_pred             HhhcccccCCch-hhhhhhhcccccccccCCCCCC-CchhhhHHHhhhcCC
Q psy2947         191 LRKQKKLHQPSR-LQDLAVQSVIASKENFFEPGLF-PGPLVDYIAREYNQY  239 (441)
Q Consensus       191 l~~~~~~~~p~~-l~~l~~l~~l~l~~n~~~~~~~-p~~~~~~l~~~~~~~  239 (441)
                      +++|.+..+|.. +..++.|+.+++++|++.+..- -..+..|+.......
T Consensus       207 L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l~~~~~~~~~~~  257 (276)
T 2z62_A          207 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKE  257 (276)
T ss_dssp             CCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTHHHHHHHHHTGGGB
T ss_pred             CCCCceeecCHhHhcccccccEEEccCCcccccCCchHHHHHHHHhccccc
Confidence            677888777754 4778899999999998886531 234456665544433

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.62  E-value=3.5e-15  Score=129.31  Aligned_cols=137  Identities=22%  Similarity=0.246  Sum_probs=111.6

Q ss_pred             cEEeccCC---CcCcccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEccCCC
Q psy2947          64 FLLSLSYT---PIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNL  140 (441)
Q Consensus        64 ~~l~l~~n---~i~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~  140 (441)
                      +.+++++|   .+|..+.  ++|+.|+|++|+|+.+|..|..+++|+.|++++|.|+ +..|..+.++++|++|+|++|+
T Consensus        13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEECCCCc
Confidence            56888888   5565543  6899999999999999988999999999999999998 4444568999999999999999


Q ss_pred             CCccc-hhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHHHhhcccccCCc-hhhhhhhhccccccccc
Q psy2947         141 LDALP-GFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEVLRKQKKLHQPS-RLQDLAVQSVIASKENF  218 (441)
Q Consensus       141 l~~lp-~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~l~~~~~~~~p~-~l~~l~~l~~l~l~~n~  218 (441)
                      |+.+| ..|..+++|+.|+|++|.+..                                +|+ .+..++.|+.+++++|+
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l~~--------------------------------~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDISV--------------------------------VPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCCCB--------------------------------CCTTTTTTCTTCCEEECCSSC
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCCCe--------------------------------eChhhhhcCccccEEEeCCCC
Confidence            99887 578999999999999999522                                222 35667889999999999


Q ss_pred             CCCCCCCchhhhHHHhh
Q psy2947         219 FEPGLFPGPLVDYIARE  235 (441)
Q Consensus       219 ~~~~~~p~~~~~~l~~~  235 (441)
                      +.+..-..++..|+...
T Consensus       138 ~~C~c~l~~l~~~~~~~  154 (193)
T 2wfh_A          138 LYCDCNMQWLSDWVKSE  154 (193)
T ss_dssp             EECSGGGHHHHHHHHHS
T ss_pred             eecCCcCHHHHHHHHhc
Confidence            98765555666666544

>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A

Probab=99.62  E-value=3.7e-15  Score=116.65  Aligned_cols=100  Identities=21%  Similarity=0.366  Sum_probs=89.0

Q ss_pred             CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh---CCCCCHH
Q psy2947         331 DIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW---GEGLSSK  407 (441)
Q Consensus       331 ~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~---~~~l~~~  407 (441)
                      .+.+++..+|+.+|  ++|.|+++||..++..   .....+.++.+|+.+|++++|+|+.+||+.++..+   |.+++++
T Consensus         7 ~t~~e~~~~~~~~d--~~g~i~~~ef~~~~~~---~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~   81 (110)
T 1pva_A            7 LKADDIKKALDAVK--AEGSFNHKKFFALVGL---KAMSANDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDA   81 (110)
T ss_dssp             SCHHHHHHHHHHTC--STTCCCHHHHHHHHTC---TTSCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTCCCCCHH
T ss_pred             CCHHHHHHHHHhcC--CCCcCcHHHHHHHHcc---CcchHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhhcCCCCCHH
Confidence            45678888888888  8899999999998843   23446789999999999999999999999999998   7889999


Q ss_pred             HHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         408 EVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       408 ~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      +++.+++.+|.|++|.|+|+||+.++.+
T Consensus        82 ~~~~~~~~~d~~~dg~i~~~eF~~~~~~  109 (110)
T 1pva_A           82 ETKAFLKAADKDGDGKIGIDEFETLVHE  109 (110)
T ss_dssp             HHHHHHHHHCTTCSSSBCHHHHHHHHHC
T ss_pred             HHHHHHHHhCCCCCCeEcHHHHHHHHHh
Confidence            9999999999999999999999998864

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.62  E-value=1.1e-15  Score=140.59  Aligned_cols=164  Identities=18%  Similarity=0.169  Sum_probs=129.5

Q ss_pred             CccCCCC---CCCCC-CcccEEeccCCCc---C-cccCCCCCCCEEEccCCCCCcCCc-CccCCCCCcEEEccCCcCCCC
Q psy2947          49 GICSHIW---IPQYF-SHAFLLSLSYTPI---G-RRIFKCDTVEVLSLKSNSLTSLPP-DIGRLTNLRVLCLTDNCLQNA  119 (441)
Q Consensus        49 ~~c~~~~---~~~~l-~~L~~l~l~~n~i---~-~~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~~  119 (441)
                      +.|.+.+   +|..+ ++|+.|++++|.+   + ..+..+++|++|++++|+++.++. .|..+++|++|++++|.++ +
T Consensus        12 ~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~   90 (276)
T 2z62_A           12 YQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-S   90 (276)
T ss_dssp             EECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-E
T ss_pred             EEecCCCccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC-c
Confidence            4455432   34433 4799999999955   3 367889999999999999998776 5999999999999999998 4


Q ss_pred             CCchhhhcCCCCCEEEccCCCCCccch-hhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-Hhhcccc
Q psy2947         120 SIPFTLTFCKNLTHLYLDNNLLDALPG-FLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKL  197 (441)
Q Consensus       120 ~~p~~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~  197 (441)
                      ..|..+..+++|++|++++|++..++. .+..+++|++|++++|.+...        .+|..+..++.+..+ +.+|.+.
T Consensus        91 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--------~l~~~~~~l~~L~~L~Ls~N~l~  162 (276)
T 2z62_A           91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF--------KLPEYFSNLTNLEHLDLSSNKIQ  162 (276)
T ss_dssp             ECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC--------CCCGGGGGCTTCCEEECCSSCCC
T ss_pred             cChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCcccee--------cCchhhccCCCCCEEECCCCCCC
Confidence            444678999999999999999988874 788999999999999996331        256777777777777 8888887


Q ss_pred             cCC-chhhhhhhhc----ccccccccCCC
Q psy2947         198 HQP-SRLQDLAVQS----VIASKENFFEP  221 (441)
Q Consensus       198 ~~p-~~l~~l~~l~----~l~l~~n~~~~  221 (441)
                      .+| ..+..+..++    .+++++|.+..
T Consensus       163 ~~~~~~~~~l~~L~~l~l~L~ls~n~l~~  191 (276)
T 2z62_A          163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNF  191 (276)
T ss_dssp             EECGGGGHHHHTCTTCCEEEECCSSCCCE
T ss_pred             cCCHHHhhhhhhccccceeeecCCCcccc
Confidence            665 4667777666    67788886653

>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent kinase, structural genomics, structural GE consortium, SGC, ATP-binding; 1.95A {Toxoplasma gondii}

Probab=99.62  E-value=1.2e-15  Score=131.92  Aligned_cols=135  Identities=19%  Similarity=0.247  Sum_probs=114.0

Q ss_pred             cccchHHHHHhhhccccC--CCccCHHHHHHHHHHc-----------CCCcCHHHHHHHHH----hCCCcccHHHHHHHH
Q psy2947         261 FKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSL-----------GMSPTIAELKKYLA----EKGGKLSFPDFLKVM  323 (441)
Q Consensus       261 ~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~-----------~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~  323 (441)
                      ++.+...+++.|..+|.+  |.| +.+|+..++..+           +..++..++..++.    +++|.|+++||..++
T Consensus        35 ~~~~~~~l~~~F~~~D~d~~G~i-~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~~g~i~~~ef~~~~  113 (191)
T 3khe_A           35 TLEETKELTQIFRQLDNNGDGQL-DRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHILQSVDFDRNGYIEYSEFVTVC  113 (191)
T ss_dssp             CTTTTHHHHHHHHHHCTTCSSEE-CHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHTCTTCSSSEEHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCCCCCC-cHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHhCCCCCCcCCHHHHHHHH
Confidence            577889999999999976  888 899999999877           44555666666664    688999999999988


Q ss_pred             HhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         324 HTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       324 ~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      .... .....+.+..+|+.+|.|++|.|+.+||..++.   ......+++..+|+.+|.|++|.|+++||.+++..+
T Consensus       114 ~~~~-~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~---~~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~~  186 (191)
T 3khe_A          114 MDKQ-LLLSRERLLAAFQQFDSDGSGKITNEELGRLFG---VTEVDDETWHQVLQECDKNNDGEVDFEEFVEMMQKI  186 (191)
T ss_dssp             SCHH-HHCCHHHHHHHHHHHCTTCSSEECHHHHHHHTT---SSCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHH
T ss_pred             HHhc-ccchHHHHHHHHHHHCCCCcCcCCHHHHHHHHc---cCCCCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence            6431 234568899999999999999999999999988   345567889999999999999999999999999874

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.62  E-value=1.8e-15  Score=138.80  Aligned_cols=152  Identities=22%  Similarity=0.187  Sum_probs=126.3

Q ss_pred             CCCcccEEeccCCCcC--cccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEc
Q psy2947          59 YFSHAFLLSLSYTPIG--RRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL  136 (441)
Q Consensus        59 ~l~~L~~l~l~~n~i~--~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l  136 (441)
                      .+++|+.|++++|.+.  ..+..+++|++|++++|.++.++ .+..+++|++|++++|.++ +..|..+..+++|++|++
T Consensus        39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L  116 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVL  116 (272)
T ss_dssp             HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             cccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccC-ccChhHhcCCcCCCEEEC
Confidence            3688999999999553  45778999999999999999864 7899999999999999998 444445799999999999


Q ss_pred             cCCCCCccc-hhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCch-hhhhhhhcccc
Q psy2947         137 DNNLLDALP-GFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSR-LQDLAVQSVIA  213 (441)
Q Consensus       137 ~~n~l~~lp-~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~-l~~l~~l~~l~  213 (441)
                      ++|+++.+| ..+..+++|++|++++|.+...         .+..+..++.+..+ +.+|.+..+|+. +..++.|+.|+
T Consensus       117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  187 (272)
T 3rfs_A          117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSL---------PKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR  187 (272)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC---------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcCCccCHHHhccCCCCCEEECCCCccCcc---------CHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEE
Confidence            999999887 4578999999999999986432         23445667777777 888888887754 58899999999


Q ss_pred             cccccCCC
Q psy2947         214 SKENFFEP  221 (441)
Q Consensus       214 l~~n~~~~  221 (441)
                      +++|.+..
T Consensus       188 L~~N~l~~  195 (272)
T 3rfs_A          188 LYQNQLKS  195 (272)
T ss_dssp             CCSSCCSC
T ss_pred             CCCCcCCc
Confidence            99998764

>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT calmodulin chimera; calcium sensor, fluorescent protein; HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A* 3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A* 3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A

Probab=99.61  E-value=5.7e-15  Score=142.06  Aligned_cols=138  Identities=32%  Similarity=0.512  Sum_probs=119.5

Q ss_pred             eecccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHH----hCCCcccHHHHHHHHHhhcCCCCC
Q psy2947         259 FTFKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLA----EKGGKLSFPDFLKVMHTHSKAEDI  332 (441)
Q Consensus       259 ~l~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~~~~~~  332 (441)
                      .++..++.+++++|..+|.+  |.| +.+|++.+++.++..++..++..++.    +++|.|+++||..++.........
T Consensus       305 ~ls~eei~el~~~F~~fD~D~dG~I-s~~EL~~~L~~lg~~~s~eel~~Lf~~~D~DgdG~IsfeEFl~ll~~~~~~~~~  383 (450)
T 3sg6_A          305 QLTEEQIAEFKEAFSLFDKDGDGTI-TTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDS  383 (450)
T ss_dssp             CCCHHHHHHHHHHHHHHCTTCSSEE-CHHHHHHHHHHTTCCCCHHHHHHHHHTTCTTSSSSEEHHHHHHHHHC------C
T ss_pred             cCCHHHHHHHHHHHHHHCCCCCCcC-cHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcccHHHHHHHHHhhccccch
Confidence            45667889999999999975  889 89999999999999999999988885    678999999999999876666667


Q ss_pred             HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy2947         333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLV  398 (441)
Q Consensus       333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~  398 (441)
                      .+.++.+|+.+|.|++|.|+.+||+.++... ......++++.+|+.+|.|++|.|+++||..+|.
T Consensus       384 ~e~l~~aFk~fD~D~dG~Is~eELr~~L~~l-G~~ls~eei~~Lf~~~D~D~DG~IsfdEFv~~L~  448 (450)
T 3sg6_A          384 EEEIREAFRVFDKDGNGYISAAELRHVMTNL-GEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT  448 (450)
T ss_dssp             HHHHHHHHHHHCTTCSSEECHHHHHHHHHHH-TCCCCHHHHHHHHHHHCTTSSSSEEHHHHHHHHC
T ss_pred             hhHHHHHHHHhCCCCCCeEeHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHh
Confidence            8899999999999999999999999999887 4456678999999999999999999999999884

>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus} SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A

Probab=99.61  E-value=2.6e-15  Score=117.15  Aligned_cols=100  Identities=16%  Similarity=0.268  Sum_probs=88.7

Q ss_pred             CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh---CCCCCH
Q psy2947         330 EDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW---GEGLSS  406 (441)
Q Consensus       330 ~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~---~~~l~~  406 (441)
                      ..+.+++..+|+.+|  ++|.|+++||..++...   ....+.++.+|+.+|.+++|.|+.+||+.+++.+   |..+++
T Consensus         5 ~~t~~e~~~~~~~~d--~~g~i~~~eF~~~~~~~---~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~   79 (108)
T 1rro_A            5 ILSAEDIAAALQECQ--DPDTFEPQKFFQTSGLS---KMSASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTE   79 (108)
T ss_dssp             TSCHHHHHHHHHHTC--STTCCCHHHHHHHHSGG---GSCHHHHHHHHHHHCTTCSSEECTHHHHTGGGGTCTTSCCCCH
T ss_pred             cCCHHHHHHHHHHcc--CCCCcCHHHHHHHHhcC---cccHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHhhccCCCCH
Confidence            356778888888898  88999999999988532   2346789999999999999999999999999998   678999


Q ss_pred             HHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         407 KEVDQIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       407 ~~~~~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      ++++.+++.+|.|++|.|+|+||+.++.
T Consensus        80 ~~~~~~~~~~D~~~dg~i~~~eF~~~~~  107 (108)
T 1rro_A           80 SETKSLMDAADNDGDGKIGADEFQEMVH  107 (108)
T ss_dssp             HHHHHHHHHHCCSSSSSEEHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCCCCcCcHHHHHHHHc
Confidence            9999999999999999999999999875

>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5

Probab=99.61  E-value=7.1e-15  Score=130.59  Aligned_cols=138  Identities=14%  Similarity=0.172  Sum_probs=113.0

Q ss_pred             ecccchHHHHHhhhccccCCCccCHHHHHHHHHHcCCC-cCHHHHHHHHH----hCCCcccHHHHHHHHHhhcCCCCCHH
Q psy2947         260 TFKTPYLEFRECFFLFARNGTIKTLDELSVIMRSLGMS-PTIAELKKYLA----EKGGKLSFPDFLKVMHTHSKAEDIPK  334 (441)
Q Consensus       260 l~~~~~~~l~~~f~~~d~~G~i~~~~el~~~~~~~~~~-~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~~~~~~~~  334 (441)
                      ++..++..+.+.|...|.+|.| +.+++..+++.++.. .+..++..++.    +++|.|+++||..++..... ....+
T Consensus        48 ~s~~ei~~l~~~Fd~~d~~G~I-~~~E~~~~l~~l~~~~~~~~~~~~~f~~~D~d~~G~I~~~Ef~~~l~~~~~-~~~~~  125 (224)
T 1s1e_A           48 FTKRELQVLYRGFKNECPSGVV-NEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLR-GTVHE  125 (224)
T ss_dssp             CCHHHHHHHHHHHHHHCTTSCB-CHHHHHHHHHTTCTTSCCHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHHHH-CCHHH
T ss_pred             CCHHHHHHHHHHHHhhCCCCCC-CHHHHHHHHHHhcCCCCcHHHHHHHHHHhcCCCCCcEeHHHHHHHHHHHcc-CCHHH
Confidence            4567777777777766678999 899999999988754 66777766664    78999999999999886642 34567


Q ss_pred             HHHHHHHhhcCCCCCcccHHHHHHHHHhh----c-------cCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         335 EVVDAFKAADTTKSGKLSFPDFLKVMHTH----S-------KAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       335 ~~~~~f~~~D~d~~g~i~~~ef~~~~~~~----~-------~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      .++.+|+.+|.|++|.|+++||..++...    .       ......+.+..+|+.+|.|++|.|+++||..++..
T Consensus       126 ~l~~~F~~~D~d~dG~Is~~E~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~Is~~EF~~~~~~  201 (224)
T 1s1e_A          126 KLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESCQE  201 (224)
T ss_dssp             HHHHHHHHHCTTCCSEECHHHHHHHHHHHHHHHTTCCCGGGCSSSHHHHHHHHHHHHCTTCSSCEEHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCCeECHHHHHHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHh
Confidence            89999999999999999999999988764    1       11222478999999999999999999999999975

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.61  E-value=3.6e-15  Score=132.16  Aligned_cols=116  Identities=21%  Similarity=0.226  Sum_probs=103.7

Q ss_pred             CCCCCcccEEeccCCCc----CcccCCCCCCCEEEccCCCCCcCCcC-ccCCCCCcEEEccCCcCCCCCCchhhhcCCCC
Q psy2947          57 PQYFSHAFLLSLSYTPI----GRRIFKCDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPFTLTFCKNL  131 (441)
Q Consensus        57 ~~~l~~L~~l~l~~n~i----~~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L  131 (441)
                      +..+++|+.|+|++|.|    |..+..+++|++|+|++|+|+.+|.. |..+++|+.|++++|+++ +..|..+..+++|
T Consensus        52 ~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L  130 (220)
T 2v9t_B           52 FSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNL  130 (220)
T ss_dssp             STTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred             hhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCC-EeCHHHcCCCCCC
Confidence            44588999999999955    56788999999999999999999987 789999999999999998 5556788999999


Q ss_pred             CEEEccCCCCCccc-hhhcCCCCCCEEEccCCcCccCcccccc
Q psy2947         132 THLYLDNNLLDALP-GFLLSMPQLDTVYRHGNHNYFKSTFMWY  173 (441)
Q Consensus       132 ~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~N~~~~~~~~~~~  173 (441)
                      ++|+|++|+|+.+| ..+..+++|+.|+|++|++.|.|.+.|+
T Consensus       131 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~~l  173 (220)
T 2v9t_B          131 NLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWL  173 (220)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGHHH
T ss_pred             CEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccHHH
Confidence            99999999999887 5688899999999999999998877654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.60  E-value=1.4e-15  Score=152.71  Aligned_cols=176  Identities=15%  Similarity=0.174  Sum_probs=97.1

Q ss_pred             CCCcccEEeccCCC----cCcccCCCCCCCEEEccCCCCCc---CCcCccCCCCCcEEEccCCcCCCCCCchh-hhcCCC
Q psy2947          59 YFSHAFLLSLSYTP----IGRRIFKCDTVEVLSLKSNSLTS---LPPDIGRLTNLRVLCLTDNCLQNASIPFT-LTFCKN  130 (441)
Q Consensus        59 ~l~~L~~l~l~~n~----i~~~~~~l~~L~~L~l~~n~l~~---lp~~~~~l~~L~~L~l~~n~l~~~~~p~~-~~~l~~  130 (441)
                      .+++|+.|++++|.    +|..+..+++|++|++++|+++.   +|..+..+++|+.|++++|.++ +.+|.. +..+++
T Consensus       322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~-~~l~~~~~~~l~~  400 (520)
T 2z7x_B          322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS-YDEKKGDCSWTKS  400 (520)
T ss_dssp             SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCB-CCGGGCSCCCCTT
T ss_pred             hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCC-cccccchhccCcc
Confidence            34555555555552    23344455555555555555552   2233555555555555555554 224443 344555


Q ss_pred             CCEEEccCCCCC-ccchhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCch-hhhhh
Q psy2947         131 LTHLYLDNNLLD-ALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSR-LQDLA  207 (441)
Q Consensus       131 L~~L~l~~n~l~-~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~-l~~l~  207 (441)
                      |++|++++|+++ .+|..+.  ++|+.|++++|++          ..+|..+..++.+..+ +++|.+..+|.. +..++
T Consensus       401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l----------~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~  468 (520)
T 2z7x_B          401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKI----------KSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLT  468 (520)
T ss_dssp             CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCC----------CCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             CCEEECcCCCCCcchhhhhc--ccCCEEECCCCcc----------cccchhhhcCCCCCEEECCCCcCCccCHHHhccCC
Confidence            555555555552 3333222  4555555555553          2456666677777777 888888888876 77888


Q ss_pred             hhcccccccccCCCCCCCchh-hhHHHhhhcCCcccccccC
Q psy2947         208 VQSVIASKENFFEPGLFPGPL-VDYIAREYNQYHVCHYCNS  247 (441)
Q Consensus       208 ~l~~l~l~~n~~~~~~~p~~~-~~~l~~~~~~~~~~~~~~~  247 (441)
                      .|+.+++++|++.+.+--.++ ..|+............|..
T Consensus       469 ~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~C~~  509 (520)
T 2z7x_B          469 SLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSG  509 (520)
T ss_dssp             TCCEEECCSSCBCCCHHHHHHHHHHHHHTTTTEESCCBBTT
T ss_pred             cccEEECcCCCCcccCCchHHHHHHHHhccccCCCCCCcCC
Confidence            888888888888764332344 5555554433333333443

>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell membrane, hydrolase, MEMB protease, thiol protease, phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A 1df0_A 1u5i_A 1kfu_L 1kfx_L

Probab=99.60  E-value=8.6e-15  Score=151.21  Aligned_cols=122  Identities=14%  Similarity=0.183  Sum_probs=111.5

Q ss_pred             HHHHHhCCCcccHHHHHHHHHhhc-------CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHH
Q psy2947         304 KKYLAEKGGKLSFPDFLKVMHTHS-------KAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDA  376 (441)
Q Consensus       304 ~~~~~~~~g~i~~~ef~~~~~~~~-------~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~  376 (441)
                      ..++ +++|.|+.+||..++....       ....+.+.++.+|+.+|.|++|.|+++||..++...       +.++.+
T Consensus       539 ~~~D-d~dG~Is~~El~~~L~~l~~~~~~~~g~~~s~~~~~~l~~~~D~d~~G~I~f~EF~~l~~~~-------~~l~~~  610 (714)
T 3bow_A          539 AQLA-GEDAEISAFELQTILRRVLAKREDIKSDGFSIETCKIMVDMLDEDGSGKLGLKEFYILWTKI-------QKYQKI  610 (714)
T ss_dssp             HHHH-GGGTSBCHHHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHCCSSCSSBCHHHHHHHHHHH-------HHHHHH
T ss_pred             HHHc-CCCCcCCHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH-------HHHHHH
Confidence            3445 8899999999999999862       345778999999999999999999999999998765       678999


Q ss_pred             HHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         377 FKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       377 f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      |+.+|+|++|.|+.+||+.+++.+|..+++++++.+++.+| |+||.|+|+||+.+|.
T Consensus       611 F~~~D~d~dG~Is~~El~~~L~~~G~~ls~~~~~~l~~~~D-d~dG~Isf~EF~~~l~  667 (714)
T 3bow_A          611 YREIDVDRSGTMNSYEMRKALEEAGFKLPCQLHQVIVARFA-DDELIIDFDNFVRCLV  667 (714)
T ss_dssp             HHHHCTTCCSSEEHHHHHHHHHHTTEECCHHHHHHHHHHHS-CTTCEECHHHHHHHHH
T ss_pred             HHHhCCCCCCeECHHHHHHHHHHcCCCCCHHHHHHHHHHhC-CCCCeEcHHHHHHHHH
Confidence            99999999999999999999999999999999999999999 9999999999999885

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.60  E-value=5.7e-16  Score=144.67  Aligned_cols=154  Identities=16%  Similarity=0.167  Sum_probs=107.9

Q ss_pred             CCCCCcccEEeccCCCcC------cccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCc--hhhhcC
Q psy2947          57 PQYFSHAFLLSLSYTPIG------RRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIP--FTLTFC  128 (441)
Q Consensus        57 ~~~l~~L~~l~l~~n~i~------~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p--~~~~~l  128 (441)
                      +..+++|+.|++++|.+.      ..+..+++|++|+|++|.++.+|..+..+++|++|++++|.++  .++  ..+..+
T Consensus        48 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~~l  125 (306)
T 2z66_A           48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK--QMSEFSVFLSL  125 (306)
T ss_dssp             TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEE--SSTTTTTTTTC
T ss_pred             hhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCccc--ccccchhhhhc
Confidence            345778888888888553      4455677888888888888877777778888888888888877  444  356777


Q ss_pred             CCCCEEEccCCCCCcc-chhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccC-Cchhhh
Q psy2947         129 KNLTHLYLDNNLLDAL-PGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQ-PSRLQD  205 (441)
Q Consensus       129 ~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~-p~~l~~  205 (441)
                      ++|++|++++|.++.+ |..+..+++|+.|++++|.+..        ..+|..+..++.+..+ +++|.+..+ |..+..
T Consensus       126 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  197 (306)
T 2z66_A          126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE--------NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS  197 (306)
T ss_dssp             TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG--------GEECSCCTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc--------ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcC
Confidence            8888888888887544 4667777888888888887421        1245556666666666 666766555 456677


Q ss_pred             hhhhcccccccccCC
Q psy2947         206 LAVQSVIASKENFFE  220 (441)
Q Consensus       206 l~~l~~l~l~~n~~~  220 (441)
                      ++.|+.|++++|.+.
T Consensus       198 l~~L~~L~L~~N~l~  212 (306)
T 2z66_A          198 LSSLQVLNMSHNNFF  212 (306)
T ss_dssp             CTTCCEEECTTSCCS
T ss_pred             CCCCCEEECCCCccC
Confidence            777777777777654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.60  E-value=1.5e-15  Score=153.56  Aligned_cols=124  Identities=22%  Similarity=0.225  Sum_probs=98.8

Q ss_pred             cCCCCCccCCCCccCCCCCCCC-CCcccEEeccCCCc----CcccCCCCCCCEEEccCCCCCcCC-cCccCCCCCcEEEc
Q psy2947          38 ACQRNCSLEVGGICSHIWIPQY-FSHAFLLSLSYTPI----GRRIFKCDTVEVLSLKSNSLTSLP-PDIGRLTNLRVLCL  111 (441)
Q Consensus        38 ~C~~~c~~~~~~~c~~~~~~~~-l~~L~~l~l~~n~i----~~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l  111 (441)
                      +|||.|.|... ...-..+|.. .++|+.|++++|.+    |..+..+++|++|+|++|+++.++ ..|..+++|++|++
T Consensus         3 ~C~~~~~c~~~-~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L   81 (549)
T 2z81_A            3 SCDASGVCDGR-SRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL   81 (549)
T ss_dssp             EECTTSEEECT-TSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             cCCCCceEECC-CCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence            58888877321 0111123322 36899999999954    456889999999999999999766 45999999999999


Q ss_pred             cCCcCCCCCCchhhhcCCCCCEEEccCCCCCc--cchhhcCCCCCCEEEccCCc
Q psy2947         112 TDNCLQNASIPFTLTFCKNLTHLYLDNNLLDA--LPGFLLSMPQLDTVYRHGNH  163 (441)
Q Consensus       112 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~--lp~~~~~l~~L~~L~l~~N~  163 (441)
                      ++|.++ +..|..++.+++|++|++++|.++.  +|..++.+++|++|++++|.
T Consensus        82 s~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~  134 (549)
T 2z81_A           82 SDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE  134 (549)
T ss_dssp             TTSCCC-SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred             CCCccC-ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCc
Confidence            999998 4444458999999999999999985  46788999999999999998

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.60  E-value=6e-15  Score=124.91  Aligned_cols=128  Identities=20%  Similarity=0.141  Sum_probs=106.0

Q ss_pred             CCcccEEeccCCC-----cCcccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEE
Q psy2947          60 FSHAFLLSLSYTP-----IGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHL  134 (441)
Q Consensus        60 l~~L~~l~l~~n~-----i~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L  134 (441)
                      .++|+.|++++|.     +|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.++ +.+|..+..+++|++|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIF-GGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCC-SCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCc-hHHHHHHhhCCCCCEE
Confidence            4789999999984     455567789999999999999987 77999999999999999998 4578777889999999


Q ss_pred             EccCCCCCccc--hhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHHHhhcccccCCc----hhhhhhh
Q psy2947         135 YLDNNLLDALP--GFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEVLRKQKKLHQPS----RLQDLAV  208 (441)
Q Consensus       135 ~l~~n~l~~lp--~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~l~~~~~~~~p~----~l~~l~~  208 (441)
                      ++++|.|+.+|  ..+..+++|+.|++++|++..                                +|.    .+..++.
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~--------------------------------~~~~~~~~~~~l~~  148 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN--------------------------------LNDYRESVFKLLPQ  148 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT--------------------------------STTHHHHHHTTCSS
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc--------------------------------hHHHHHHHHHhCcc
Confidence            99999999887  788999999999999998522                                222    4566777


Q ss_pred             hcccccccccCCC
Q psy2947         209 QSVIASKENFFEP  221 (441)
Q Consensus       209 l~~l~l~~n~~~~  221 (441)
                      |+.++++.|....
T Consensus       149 L~~L~l~~n~~~~  161 (168)
T 2ell_A          149 LTYLDGYDREDQE  161 (168)
T ss_dssp             CCEETTEETTSCB
T ss_pred             CcEecCCCCChhh
Confidence            8888888776543

>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis thaliana} PDB: 1v1g_A 1v1f_A

Probab=99.60  E-value=8.5e-15  Score=128.46  Aligned_cols=161  Identities=15%  Similarity=0.170  Sum_probs=116.2

Q ss_pred             eecccchHHHHHhhhccccC----CCccCHHHHHHHHHHcCCCcCHHHH----HHHHHhCCCcccHHHHHHHHHhhcCCC
Q psy2947         259 FTFKTPYLEFRECFFLFARN----GTIKTLDELSVIMRSLGMSPTIAEL----KKYLAEKGGKLSFPDFLKVMHTHSKAE  330 (441)
Q Consensus       259 ~l~~~~~~~l~~~f~~~d~~----G~i~~~~el~~~~~~~~~~~~~~~~----~~~~~~~~g~i~~~ef~~~~~~~~~~~  330 (441)
                      .++..++..+.+.|..+|.+    |.| +.+|+..++.. ........+    ..++.+++|.|+++||..++.......
T Consensus        30 ~~s~~~~~~l~~~F~~~D~d~~~~G~i-~~~e~~~~l~~-~~~~~~~~~~~~f~~~D~d~~g~i~~~Ef~~~~~~~~~~~  107 (207)
T 2ehb_A           30 PFTVEEVEALYELFKKLSSSIIDDGLI-HKEEFQLALFR-NRNRRNLFADRIFDVFDVKRNGVIEFGEFVRSLGVFHPSA  107 (207)
T ss_dssp             SCCHHHHHHHHHHHHHHTTSSSCSSCE-EHHHHHHHHHS-CTTCCCHHHHHHHHHHCTTCSSEECHHHHHHHHGGGSTTS
T ss_pred             CCCHHHHHHHHHHHHHhccccCCCCcc-CHHHHHHHHhc-cccccHHHHHHHHHHhcCCCCCeEeHHHHHHHHHHHccCC
Confidence            35677889999999999954    888 89999999876 222222233    333357899999999999998775555


Q ss_pred             CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhh---ccCCCChHH----HHHHHHHhCCCCCCcccHHHHHHHHHHhCCC
Q psy2947         331 DIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTH---SKAEDIPKE----VVDAFKAADTTKSGTVPAKYLKHVLVNWGEG  403 (441)
Q Consensus       331 ~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~---~~~~~~~~~----~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~  403 (441)
                      ...+.++.+|+.+|.|++|.|+.+||..++...   .+.....++    ++.+|+.+|.|++|.|+++||.+++....  
T Consensus       108 ~~~~~l~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~~~--  185 (207)
T 2ehb_A          108 PVHEKVKFAFKLYDLRQTGFIEREELKEMVVALLHESELVLSEDMIEVMVDKAFVQADRKNDGKIDIDEWKDFVSLNP--  185 (207)
T ss_dssp             CHHHHHHHHHHHHCTTCCSSEEHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHCG--
T ss_pred             CHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHcccccCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHhCh--
Confidence            567889999999999999999999999988632   123333443    46678899999999999999999998632  


Q ss_pred             CCHHHHHHHHHHh--CCCCCCceeHHHHH
Q psy2947         404 LSSKEVDQIFREA--NVTMNSKVRYEDFV  430 (441)
Q Consensus       404 l~~~~~~~l~~~~--d~d~dg~i~~~ef~  430 (441)
                             .+++.+  ..-++..++|.+|+
T Consensus       186 -------~~~~~~~~~~~~~~~~~f~~~~  207 (207)
T 2ehb_A          186 -------SLIKNMTLPYLKDINRTFPSFV  207 (207)
T ss_dssp             -------GGGGGGCCTTTTSTTTC-----
T ss_pred             -------HHHHHhcchhhhhhhhcCcCcC
Confidence                   111112  12457788888875

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.60  E-value=2.6e-15  Score=140.23  Aligned_cols=143  Identities=20%  Similarity=0.203  Sum_probs=75.8

Q ss_pred             CCcccEEeccCCCc---CcccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEc
Q psy2947          60 FSHAFLLSLSYTPI---GRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL  136 (441)
Q Consensus        60 l~~L~~l~l~~n~i---~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l  136 (441)
                      +++|+.|++++|.+   +. +..+++|++|+|++|.++.+| .+..+++|+.|++++|.++  .+|. +..+++|++|++
T Consensus        62 l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~--~~~~-l~~l~~L~~L~l  136 (308)
T 1h6u_A           62 LNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQIT--DVTP-LAGLSNLQVLYL  136 (308)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCC--CCGG-GTTCTTCCEEEC
T ss_pred             cCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCC--Cchh-hcCCCCCCEEEC
Confidence            55566666666632   23 555566666666666666553 4555666666666666665  3443 555666666666


Q ss_pred             cCCCCCccchhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCchhhhhhhhcccccc
Q psy2947         137 DNNLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSRLQDLAVQSVIASK  215 (441)
Q Consensus       137 ~~n~l~~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~l~~l~~l~~l~l~  215 (441)
                      ++|+++.++. +..+++|+.|++++|.+....          . +..++.+..+ +.+|.+..+|+ +..++.|+.|+++
T Consensus       137 ~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~----------~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~  203 (308)
T 1h6u_A          137 DLNQITNISP-LAGLTNLQYLSIGNAQVSDLT----------P-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLK  203 (308)
T ss_dssp             CSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG----------G-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECT
T ss_pred             CCCccCcCcc-ccCCCCccEEEccCCcCCCCh----------h-hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEcc
Confidence            6666655544 555566666666666542211          1 3333333333 44444444443 4555555555555


Q ss_pred             cccCC
Q psy2947         216 ENFFE  220 (441)
Q Consensus       216 ~n~~~  220 (441)
                      +|.+.
T Consensus       204 ~N~l~  208 (308)
T 1h6u_A          204 NNQIS  208 (308)
T ss_dssp             TSCCC
T ss_pred             CCccC
Confidence            55443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.60  E-value=2.9e-15  Score=153.02  Aligned_cols=105  Identities=26%  Similarity=0.299  Sum_probs=83.6

Q ss_pred             CCCcccEEeccCCCc----CcccCCCCCCCEEEccCCCCCcCCcC-ccCCCCCcEEEccCCcCCCCCCchh-hhcCCCCC
Q psy2947          59 YFSHAFLLSLSYTPI----GRRIFKCDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPFT-LTFCKNLT  132 (441)
Q Consensus        59 ~l~~L~~l~l~~n~i----~~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~p~~-~~~l~~L~  132 (441)
                      .+++|+.|+|++|.|    |..+..+++|++|+|++|.++.+|+. |+.+++|++|++++|.++  .+|.. ++.+++|+
T Consensus        73 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~l~~~~~~~l~~L~  150 (597)
T 3oja_B           73 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS--SLPRGIFHNTPKLT  150 (597)
T ss_dssp             HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCC
T ss_pred             cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC--CCCHHHhccCCCCC
Confidence            467889999988854    24677888888888888888877665 788888888888888887  66665 47888888


Q ss_pred             EEEccCCCCCccc-hhhcCCCCCCEEEccCCcCc
Q psy2947         133 HLYLDNNLLDALP-GFLLSMPQLDTVYRHGNHNY  165 (441)
Q Consensus       133 ~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~N~~~  165 (441)
                      +|+|++|.|+.++ ..|+.+++|+.|++++|.+.
T Consensus       151 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  184 (597)
T 3oja_B          151 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT  184 (597)
T ss_dssp             EEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             EEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC
Confidence            8888888887665 56788888888888888764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.59  E-value=4.5e-15  Score=131.52  Aligned_cols=116  Identities=18%  Similarity=0.191  Sum_probs=103.4

Q ss_pred             CCCCCcccEEeccCCCc---C-cccCCCCCCCEEEccCCCCCcCCcC-ccCCCCCcEEEccCCcCCCCCCchhhhcCCCC
Q psy2947          57 PQYFSHAFLLSLSYTPI---G-RRIFKCDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPFTLTFCKNL  131 (441)
Q Consensus        57 ~~~l~~L~~l~l~~n~i---~-~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L  131 (441)
                      +..+++|+.|+|++|.|   + ..+..+++|++|+|++|+++.+|+. |..+++|++|++++|+++ +..|..+..+++|
T Consensus        53 ~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L  131 (220)
T 2v70_A           53 FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSV  131 (220)
T ss_dssp             GGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCC-CBCTTSSTTCTTC
T ss_pred             hccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCC-eECHhHcCCCccC
Confidence            34589999999999955   3 4688899999999999999988876 999999999999999998 5557788999999


Q ss_pred             CEEEccCCCCCcc-chhhcCCCCCCEEEccCCcCccCcccccc
Q psy2947         132 THLYLDNNLLDAL-PGFLLSMPQLDTVYRHGNHNYFKSTFMWY  173 (441)
Q Consensus       132 ~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~N~~~~~~~~~~~  173 (441)
                      ++|+|++|+|+.+ |..|..+++|+.|++++|++.+.|.+.|+
T Consensus       132 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~l  174 (220)
T 2v70_A          132 RLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWL  174 (220)
T ss_dssp             SEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGHHH
T ss_pred             CEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchHHH
Confidence            9999999999888 68899999999999999999998876654

>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium binding, EF-hand superfamily, S genomics, protein structure initiative, PSI; 2.10A {Danio rerio} PDB: 2q4u_A

Probab=99.59  E-value=8.2e-15  Score=134.17  Aligned_cols=140  Identities=15%  Similarity=0.256  Sum_probs=113.3

Q ss_pred             CHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHH----hhcCC-CCCHHHHHH----HHHhhcCCCCCcccH
Q psy2947         283 TLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH----THSKA-EDIPKEVVD----AFKAADTTKSGKLSF  353 (441)
Q Consensus       283 ~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~----~~~~~-~~~~~~~~~----~f~~~D~d~~g~i~~  353 (441)
                      +..+++.++..++            .+++|.|+.+||..++.    ..... ..+..++..    +|+.+|.|++|.|++
T Consensus         9 ~~~~l~~~F~~~D------------~d~~G~i~~~El~~~l~~~~~~lg~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~   76 (272)
T 2be4_A            9 DAAGFLQIWQHFD------------ADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSAYDATFDGRLQI   76 (272)
T ss_dssp             CHHHHHHHHHHHC------------TTCCSEEEGGGHHHHHHHHHHHHSTTSCCCHHHHHHHHHHHSCHHHHTCCSEEEH
T ss_pred             CHHHHHHHHHHhc------------CCCCCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEeH
Confidence            4566666666655            68999999999999998    44331 445555544    568999999999999


Q ss_pred             HHHHHHH-----------HhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh----CCCCCHHHHHH----HHH
Q psy2947         354 PDFLKVM-----------HTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW----GEGLSSKEVDQ----IFR  414 (441)
Q Consensus       354 ~ef~~~~-----------~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~----~~~l~~~~~~~----l~~  414 (441)
                      +||..++           ... ......+.++.+|+.+|.+++|.|+.+||+.++..+    |..++++++..    +++
T Consensus        77 ~Ef~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~  155 (272)
T 2be4_A           77 EELANMILPQEENFLLIFRRE-APLDNSVEFMKIWRKYDADSSGYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMK  155 (272)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHH-SCCCCHHHHHHHHHHHCTTCCSEEEGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhHHHHHHHhhc-cCcccHHHHHHHHHHhCCCCCCccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence            9999983           222 234456789999999999999999999999999987    88899888754    999


Q ss_pred             HhCCCCCCceeHHHHHHHHhc
Q psy2947         415 EANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       415 ~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      .+|.|++|.|+|+||+.++..
T Consensus       156 ~~D~~~dg~i~~~ef~~~~~~  176 (272)
T 2be4_A          156 IFDKNKDGRLDLNDLARILAL  176 (272)
T ss_dssp             HHCSSCSSEEEHHHHGGGSCC
T ss_pred             HhccCCCCcCcHHHHHHHHhh
Confidence            999999999999999988753

>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding protein; HET: MYR; NMR {Schizosaccharomyces pombe}

Probab=99.59  E-value=8.3e-15  Score=126.60  Aligned_cols=124  Identities=19%  Similarity=0.199  Sum_probs=109.7

Q ss_pred             hCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCC-CCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCc
Q psy2947         309 EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTT-KSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGT  387 (441)
Q Consensus       309 ~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d-~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~  387 (441)
                      +..|.++.+++..+....   ..+..+++.+|+.+|.+ ++|.|+++||..++..........+.++.+|+.+|.+++|.
T Consensus         3 ~~~~~l~~~el~~~~~~~---~~~~~el~~~f~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~G~   79 (190)
T 2l2e_A            3 KSQSKLSQDQLQDLVRST---RFDKKELQQWYKGFFKDCPSGHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKNGY   79 (190)
T ss_dssp             CSSCCSCHHHHHHHHHHH---CSCSHHHHHHHHHHHHHSCCCEECHHHHHHHHHHHCCCSCHHHHHHHHHHHHCSSSTTC
T ss_pred             cccccCCHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHhCCCCCccHHHHHHHHHhcCCCCCe
Confidence            356789999998888764   24678999999999999 89999999999999887444445678999999999999999


Q ss_pred             ccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         388 VPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       388 is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      |+++||..++...+...+.+++..+|+.+|.|++|.|+++||..++..
T Consensus        80 i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~e~~~~~~~  127 (190)
T 2l2e_A           80 IDFKEFICALSVTSRGELNDKLIWAFQLYDLDNNGLISYDEMLRIVDA  127 (190)
T ss_dssp             EEHHHHHHHHTTSSCSCSHHHHHHHHHHHCTTSCSCBCHHHHHHHHHH
T ss_pred             EeHHHHHHHHHHHcCCCHHHHHHHHHhHccCCCCCcCcHHHHHHHHHH
Confidence            999999999998888888999999999999999999999999998864

>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}

Probab=99.59  E-value=8.8e-15  Score=125.38  Aligned_cols=130  Identities=15%  Similarity=0.306  Sum_probs=108.0

Q ss_pred             ccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHH----hCCCcccHHHHHHHHHhhcCCCCCHHH
Q psy2947         262 KTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLA----EKGGKLSFPDFLKVMHTHSKAEDIPKE  335 (441)
Q Consensus       262 ~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~~~~~~~~~  335 (441)
                      +.++..++++|..+|.+  |.| +.+|+..+++.++..  ..++..++.    +++|.|+++||..++.....  ...+.
T Consensus        35 ~~~~~~l~~~F~~~D~d~~G~i-~~~El~~~l~~~g~~--~~~~~~~~~~~D~d~~g~i~~~Ef~~~~~~~~~--~~~~~  109 (180)
T 3mse_B           35 NNHIKYINELFYKLDTNHNGSL-SHREIYTVLASVGIK--KWDINRILQALDINDRGNITYTEFMAGCYRWKN--IESTF  109 (180)
T ss_dssp             HHHHHHHHHHHHHHCTTCSSSE-EHHHHHHHHHHTTCC--HHHHHHHHHHHCTTCCSEECHHHHHHHHSCCTT--C--CH
T ss_pred             HHHHHHHHHHHHHhCCCCCCcC-CHHHHHHHHHHcCCC--HHHHHHHHHHhCCCCCCcCcHHHHHHHHHhccc--CCHHH
Confidence            67889999999999986  889 899999999998865  456666554    68999999999998875433  23478


Q ss_pred             HHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCC--------CcccHHHHHHHHHH
Q psy2947         336 VVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKS--------GTVPAKYLKHVLVN  399 (441)
Q Consensus       336 ~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~--------G~is~~ef~~~l~~  399 (441)
                      +..+|+.+|.|++|.|+.+||..++..   .....+++..+|+.+|.+++        |.|+++||..+|..
T Consensus       110 ~~~~F~~~D~d~~G~I~~~El~~~l~~---~~~~~~~~~~~~~~~d~~~d~~~~~~~~G~i~~~eF~~~l~~  178 (180)
T 3mse_B          110 LKAAFNKIDKDEDGYISKSDIVSLVHD---KVLDNNDIDNFFLSVHSIKKGIPREHIINKISFQEFKDYMLS  178 (180)
T ss_dssp             HHHHHHHHCTTCSSCBCHHHHHHHTTT---SSCCHHHHHHHHHHHHTC---------CCCBCHHHHHHHHHT
T ss_pred             HHHHHHHHCCCCCCCCCHHHHHHHHcC---CCCCHHHHHHHHHHhhhccCcccccccCCeeeHHHHHHHHHh
Confidence            999999999999999999999999883   34557889999999999988        99999999999864

>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+) requirement, hydrolase chimera; 2.80A {Rattus norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3

Probab=99.58  E-value=9.6e-16  Score=163.15  Aligned_cols=162  Identities=16%  Similarity=0.249  Sum_probs=115.1

Q ss_pred             hHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHH---hCCCcccHHHHHHHHHhhc------------
Q psy2947         265 YLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLA---EKGGKLSFPDFLKVMHTHS------------  327 (441)
Q Consensus       265 ~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~---~~~g~i~~~ef~~~~~~~~------------  327 (441)
                      ...++.+|..+|.+  |.| +.+|++.+++.++...+..++..++.   +++|.|+++||..++....            
T Consensus       606 ~~~l~~~F~~~D~d~~G~I-s~~El~~~l~~~g~~l~~~~~~~l~~~~dd~dg~I~~~eF~~~~~~~~~l~~~F~~~D~d  684 (900)
T 1qxp_A          606 IRNYLTIFRKFDLDKSGSM-SAYEMRMAIEAAGFKLPCQLHQVIVARFADDELIIDFDNFVRCLVRLEILFKIFKQLDPE  684 (900)
T ss_dssp             HHHHHHHHGGGCTTCCSCC-BHHHHHHHHHHTTEECCHHHHHHHHHHTSCSSSBCCHHHHHHHHHHHHHHHHHHHHSCSS
T ss_pred             HHHHHHHHHhhCCCCCCeE-CHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCeEcHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            36788999999986  889 89999999999998888888887775   5789999999988764210            


Q ss_pred             ------------------------------------------------------------------------C-------
Q psy2947         328 ------------------------------------------------------------------------K-------  328 (441)
Q Consensus       328 ------------------------------------------------------------------------~-------  328 (441)
                                                                                              .       
T Consensus       685 ~~G~It~~~~efl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~G~Is~~El~~~L~~~~~~~~  764 (900)
T 1qxp_A          685 NTGTIQLDLISWLSFSVLGKLAAAIEHHHHHHMHYSNIEANESEEERQFRKLFVQLAGDDMEVSATELMNILNKVVTRHP  764 (900)
T ss_dssp             CCSCEEEEHHHHHHHTCC--------------CCCCCC--------------CCCCTTCSSCBCHHHHTTTSCC----CC
T ss_pred             CCceEEecHHHHHHHhhhccccccccccccccccccCCCCCChHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHhccccc
Confidence                                                                                    0       


Q ss_pred             ----CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCC
Q psy2947         329 ----AEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGL  404 (441)
Q Consensus       329 ----~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l  404 (441)
                          ...+.+.+..+|+.+|.|++|.|+++||..++...       ..++.+|+.+|.|++|.|+.+||+++++.+|..+
T Consensus       765 ~~~~~~~s~~~~~~l~~~~D~d~dG~Is~~EF~~l~~~~-------~~l~~~F~~~D~d~dG~Is~~El~~~l~~~g~~l  837 (900)
T 1qxp_A          765 DLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNI-------KKWQGIYKRFETDRSGTIGSNELPGAFEAAGFHL  837 (900)
T ss_dssp             SCC--CCCHHHHHHHHHHHCCSSSSSBCSHHHHHHHHHH-------HHHSSCC----CCSCC-------CCTTGGGTCCC
T ss_pred             ccccCCCCHHHHHHHHHHHCCCCCCeECHHHHHHHHHHH-------HHHHHHHHHhCCCCCCccCHHHHHHHHHhcCCCC
Confidence                01123567778888888888888888888877654       3667789999999999999999999999899889


Q ss_pred             CHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         405 SSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       405 ~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      ++++++.+++.+| |++|.|+|+||+.++.+
T Consensus       838 s~~~~~~l~~~~d-d~dg~Is~~EF~~~~~~  867 (900)
T 1qxp_A          838 NQHIYSMIIRRYS-DETGNMDFDNFISCLVR  867 (900)
T ss_dssp             CSCCCC---------CCSCCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhc-CCCCeECHHHHHHHHHH
Confidence            9999999999999 99999999999988753

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.58  E-value=8.1e-15  Score=144.55  Aligned_cols=174  Identities=21%  Similarity=0.157  Sum_probs=106.7

Q ss_pred             CCCCcccEEeccCCCc----CcccCCCCCCCEEEccCCCCCcCCcC-ccCCCCCcEEEccCCcCCCCCCch---------
Q psy2947          58 QYFSHAFLLSLSYTPI----GRRIFKCDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPF---------  123 (441)
Q Consensus        58 ~~l~~L~~l~l~~n~i----~~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~p~---------  123 (441)
                      ..+++|+.|+|++|.|    |..+..+++|++|+|++|+++.+|.. |..+++|++|++++|.++  .+|.         
T Consensus        96 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L  173 (452)
T 3zyi_A           96 RHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE--SIPSYAFNRVPSL  173 (452)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC--EECTTTTTTCTTC
T ss_pred             CCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcc--eeCHhHHhcCCcc
Confidence            3466666777766643    23455566666666666666655554 555666666666666554  3322         


Q ss_pred             -----------------hhhcCCCCCEEEccCCCCCccchhhcCCCCCCEEEccCCcCccCcc--cc-------------
Q psy2947         124 -----------------TLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNHNYFKST--FM-------------  171 (441)
Q Consensus       124 -----------------~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~N~~~~~~~--~~-------------  171 (441)
                                       .+..+++|++|+|++|+++.+|. +..+++|+.|+|++|.+.....  +.             
T Consensus       174 ~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n  252 (452)
T 3zyi_A          174 MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS  252 (452)
T ss_dssp             CEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC-CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTS
T ss_pred             cEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc-ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCC
Confidence                             24566677777777777776653 5566677777777776533211  00             


Q ss_pred             cccccccccccccchhHHH-HhhcccccCCc-hhhhhhhhcccccccccCCCCCCCchhhhHHHh
Q psy2947         172 WYHSDIHARIRSTSTRDEV-LRKQKKLHQPS-RLQDLAVQSVIASKENFFEPGLFPGPLVDYIAR  234 (441)
Q Consensus       172 ~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~-~l~~l~~l~~l~l~~n~~~~~~~p~~~~~~l~~  234 (441)
                      .+....|..+..++.+..+ +++|.+..+|. .+..++.|+.+++++|++.+.+--.++..|+..
T Consensus       253 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~~l~~~l~~  317 (452)
T 3zyi_A          253 QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLRE  317 (452)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTHHHHHHHHH
T ss_pred             cCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCchHHHHHHHH
Confidence            0112234456666666666 77888877764 356788888888888888876655556666544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.58  E-value=9.5e-15  Score=143.55  Aligned_cols=176  Identities=19%  Similarity=0.112  Sum_probs=106.4

Q ss_pred             CCCCCcccEEeccCCCc---Cc-ccCCCCCCCEEEccCCCCCcCCcC-ccCCCCCcEEEccCCcCCCCCCch-hhhcCCC
Q psy2947          57 PQYFSHAFLLSLSYTPI---GR-RIFKCDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPF-TLTFCKN  130 (441)
Q Consensus        57 ~~~l~~L~~l~l~~n~i---~~-~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~p~-~~~~l~~  130 (441)
                      +..+++|+.|+|++|.|   |. .+..+++|++|+|++|.++.+|.. |..+++|+.|++++|... +.+|. .+.++++
T Consensus       108 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l-~~i~~~~~~~l~~  186 (440)
T 3zyj_A          108 FNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRL-SYISEGAFEGLSN  186 (440)
T ss_dssp             GTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTC-CEECTTTTTTCSS
T ss_pred             ccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCc-ceeCcchhhcccc
Confidence            34567778888877733   32 456677777777777777766553 666666666666653322 23443 3455555


Q ss_pred             CCEEEccCCCCCccchhhcCCCCCCEEEccCCcCccCcc--cc-------------cccccccccccccchhHHH-Hhhc
Q psy2947         131 LTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNHNYFKST--FM-------------WYHSDIHARIRSTSTRDEV-LRKQ  194 (441)
Q Consensus       131 L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~N~~~~~~~--~~-------------~~~~~~p~~l~~l~~~~~~-l~~~  194 (441)
                      |++|++++|+++.+|. +..+++|+.|+|++|++.....  +.             .+....+..+..++.+..+ +++|
T Consensus       187 L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  265 (440)
T 3zyj_A          187 LRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN  265 (440)
T ss_dssp             CCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS
T ss_pred             cCeecCCCCcCccccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC
Confidence            5555555555555542 4445555555555555322210  00             0112234556667777777 8888


Q ss_pred             ccccCCc-hhhhhhhhcccccccccCCCCCCCchhhhHHHh
Q psy2947         195 KKLHQPS-RLQDLAVQSVIASKENFFEPGLFPGPLVDYIAR  234 (441)
Q Consensus       195 ~~~~~p~-~l~~l~~l~~l~l~~n~~~~~~~p~~~~~~l~~  234 (441)
                      .+..+|. .+..++.|+.+++++|++.+.+--.++..|+..
T Consensus       266 ~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~l~~~~~~  306 (440)
T 3zyj_A          266 NLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKD  306 (440)
T ss_dssp             CCCCCCTTTTSSCTTCCEEECCSSCEECSSTTHHHHHHHHT
T ss_pred             CCCccChhHhccccCCCEEEcCCCCccCCCCchHHHHHHHh
Confidence            8888775 457788999999999999887655566666654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.58  E-value=3.6e-15  Score=152.69  Aligned_cols=163  Identities=12%  Similarity=0.081  Sum_probs=91.6

Q ss_pred             CCcccEEeccCCCc----C-cccCCCCCCCEEEccCCCCCc-CCcCccCCCCCcEEEccCCcCCCC-CCchhhhcCCCCC
Q psy2947          60 FSHAFLLSLSYTPI----G-RRIFKCDTVEVLSLKSNSLTS-LPPDIGRLTNLRVLCLTDNCLQNA-SIPFTLTFCKNLT  132 (441)
Q Consensus        60 l~~L~~l~l~~n~i----~-~~~~~l~~L~~L~l~~n~l~~-lp~~~~~l~~L~~L~l~~n~l~~~-~~p~~~~~l~~L~  132 (441)
                      +++|+.|++++|.+    | ..+..+++|++|++++|.++. .|..+..+++|+.|++++|.++ + .+|..+..+++|+
T Consensus       398 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~  476 (606)
T 3vq2_A          398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK-DNTLSNVFANTTNLT  476 (606)
T ss_dssp             CTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG-GGEECSCCTTCTTCC
T ss_pred             CCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCC-CcchHHhhccCCCCC
Confidence            44455555555521    1 234455555555555555552 3344555555666666655555 2 2455555556666


Q ss_pred             EEEccCCCCCcc-chhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCchhhhhh-hh
Q psy2947         133 HLYLDNNLLDAL-PGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSRLQDLA-VQ  209 (441)
Q Consensus       133 ~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~l~~l~-~l  209 (441)
                      +|++++|+++.+ |..+..+++|+.|++++|++         .+..|..+..++.+..+ +++|.+..+|..+..++ +|
T Consensus       477 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l---------~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L  547 (606)
T 3vq2_A          477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL---------LFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSL  547 (606)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSSCC---------SCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTC
T ss_pred             EEECCCCcCCccChhhhcccccCCEEECCCCcC---------CCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccC
Confidence            666666666444 34455566666666666653         23345666666666666 67777777776666665 47


Q ss_pred             cccccccccCCCCCCCchhhhHH
Q psy2947         210 SVIASKENFFEPGLFPGPLVDYI  232 (441)
Q Consensus       210 ~~l~l~~n~~~~~~~p~~~~~~l  232 (441)
                      +.+++++|++.+.+-..++.+|+
T Consensus       548 ~~l~l~~N~~~c~c~~~~~~~~l  570 (606)
T 3vq2_A          548 AFFNLTNNSVACICEHQKFLQWV  570 (606)
T ss_dssp             CEEECCSCCCCCSSTTHHHHTTT
T ss_pred             cEEEccCCCcccCCccHHHHHHH
Confidence            77777777776644334444544

>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand, calcium-binding protein, guanylyl cyclase regulation, lyase; NMR {Bos taurus} SCOP: a.39.1.5

Probab=99.58  E-value=2.9e-14  Score=124.75  Aligned_cols=146  Identities=12%  Similarity=0.196  Sum_probs=117.7

Q ss_pred             ccchHHHHHhhhcccc---CCCccCHHHHHHHHHHcCCCcCHHHHHHHHH----hCCCcccHHHHHHHHHhhcCCCCCHH
Q psy2947         262 KTPYLEFRECFFLFAR---NGTIKTLDELSVIMRSLGMSPTIAELKKYLA----EKGGKLSFPDFLKVMHTHSKAEDIPK  334 (441)
Q Consensus       262 ~~~~~~l~~~f~~~d~---~G~i~~~~el~~~~~~~~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~~~~~~~~  334 (441)
                      .-...+++++|..+|.   +|.| +.+|+..+++.++......++..++.    +++|.|+++||..++..... ....+
T Consensus        18 ~~~~~el~~~f~~~D~~~~~G~i-~~~e~~~~l~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~Ef~~~~~~~~~-~~~~~   95 (204)
T 1jba_A           18 AADAAQLQEWYKKFLEECPSGTL-FMHEFKRFFKVPDNEEATQYVEAMFRAFDTNGDNTIDFLEYVAALNLVLR-GTLEH   95 (204)
T ss_dssp             HHHHHHHHHHHHHHHSSSTTCCE-EHHHHHHHHHCCSSSTTHHHHHHHHHHHCCSSSSEECHHHHHHHHHHHSS-CCCTH
T ss_pred             CCCHHHHHHHHHHHHhhCCCCCc-CHHHHHHHHHHhcCCCcHHHHHHHHHHHcCCCCCeEeHHHHHHHHHHHcc-CCHHH
Confidence            3456677888888886   4788 89999999999988777777776664    68999999999999987643 35678


Q ss_pred             HHHHHHHhhcCCCCCcccHHHHHHHHHhhcc----------------CCCChHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy2947         335 EVVDAFKAADTTKSGKLSFPDFLKVMHTHSK----------------AEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLV  398 (441)
Q Consensus       335 ~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~----------------~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~  398 (441)
                      .+..+|+.+|.|++|.|+++||..++.....                .....+.+..+|+.+|.|++|.|+++||++++.
T Consensus        96 ~~~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~f~~~D~d~dG~Is~~Ef~~~~~  175 (204)
T 1jba_A           96 KLKWTFKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGKLLTPEEVVDRIFLLVDENGDGQLSLNEFVEGAR  175 (204)
T ss_dssp             HHHHHHHHHCSSCSSCBCHHHHHHHHHHHHHHHHHSSCCTTSSTTTCCCCHHHHHHHHHHHHCCSCCSCBCHHHHHHHHT
T ss_pred             HHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHhCCCCccccccccCchhhHHHHHHHHHHHhCCCCCCeEcHHHHHHHHH
Confidence            8999999999999999999999998876521                113356799999999999999999999999995


Q ss_pred             HhCCCCCHHHHHHHHHH
Q psy2947         399 NWGEGLSSKEVDQIFRE  415 (441)
Q Consensus       399 ~~~~~l~~~~~~~l~~~  415 (441)
                      .      ..++..++..
T Consensus       176 ~------~~~~~~~~~~  186 (204)
T 1jba_A          176 R------DKWVMKMLQM  186 (204)
T ss_dssp             T------TTTHHHHHHS
T ss_pred             c------ChHHHHHHHh
Confidence            3      3445556653

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.58  E-value=7.3e-15  Score=137.21  Aligned_cols=148  Identities=23%  Similarity=0.252  Sum_probs=127.4

Q ss_pred             CCCCCcccEEeccCCCcC--cccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEE
Q psy2947          57 PQYFSHAFLLSLSYTPIG--RRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHL  134 (441)
Q Consensus        57 ~~~l~~L~~l~l~~n~i~--~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L  134 (441)
                      ...+++|+.|++++|.+.  +.+..+++|+.|++++|+++.+|. +..+++|+.|++++|.++  .+|. +..+++|++|
T Consensus        81 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~--~~~~-l~~l~~L~~L  156 (308)
T 1h6u_A           81 LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQIT--NISP-LAGLTNLQYL  156 (308)
T ss_dssp             GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCC--CCGG-GGGCTTCCEE
T ss_pred             HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccC--cCcc-ccCCCCccEE
Confidence            455889999999999553  457889999999999999998875 999999999999999998  6665 8999999999


Q ss_pred             EccCCCCCccchhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCchhhhhhhhcccc
Q psy2947         135 YLDNNLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSRLQDLAVQSVIA  213 (441)
Q Consensus       135 ~l~~n~l~~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~l~~l~~l~~l~  213 (441)
                      ++++|+++.++. +..+++|+.|++++|.+....          . +..++.+..+ +++|.+..++ .+..+++|+.++
T Consensus       157 ~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~----------~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~  223 (308)
T 1h6u_A          157 SIGNAQVSDLTP-LANLSKLTTLKADDNKISDIS----------P-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVT  223 (308)
T ss_dssp             ECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG----------G-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEE
T ss_pred             EccCCcCCCChh-hcCCCCCCEEECCCCccCcCh----------h-hcCCCCCCEEEccCCccCccc-cccCCCCCCEEE
Confidence            999999999887 889999999999999974322          1 5666667667 8889998888 489999999999


Q ss_pred             cccccCCC
Q psy2947         214 SKENFFEP  221 (441)
Q Consensus       214 l~~n~~~~  221 (441)
                      +++|++..
T Consensus       224 l~~N~i~~  231 (308)
T 1h6u_A          224 LTNQTITN  231 (308)
T ss_dssp             EEEEEEEC
T ss_pred             ccCCeeec
Confidence            99998865

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.58  E-value=6e-15  Score=142.63  Aligned_cols=105  Identities=26%  Similarity=0.300  Sum_probs=71.9

Q ss_pred             CCCcccEEeccCCCcC----cccCCCCCCCEEEccCCCCCcCCcC-ccCCCCCcEEEccCCcCCCCCCchh-hhcCCCCC
Q psy2947          59 YFSHAFLLSLSYTPIG----RRIFKCDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPFT-LTFCKNLT  132 (441)
Q Consensus        59 ~l~~L~~l~l~~n~i~----~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~p~~-~~~l~~L~  132 (441)
                      .+++|+.|++++|.+.    ..+..+++|++|+|++|.++.+|+. |..+++|++|++++|.++  .+|.. +..+++|+
T Consensus        67 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~l~~~~~~~l~~L~  144 (390)
T 3o6n_A           67 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS--SLPRGIFHNTPKLT  144 (390)
T ss_dssp             HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCC
T ss_pred             ccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC--cCCHHHhcCCCCCc
Confidence            3567777777777432    3566677777777777777766544 677777777777777776  56655 36777777


Q ss_pred             EEEccCCCCCccc-hhhcCCCCCCEEEccCCcCc
Q psy2947         133 HLYLDNNLLDALP-GFLLSMPQLDTVYRHGNHNY  165 (441)
Q Consensus       133 ~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~N~~~  165 (441)
                      +|++++|+++.++ ..+..+++|+.|++++|.+.
T Consensus       145 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  178 (390)
T 3o6n_A          145 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT  178 (390)
T ss_dssp             EEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred             EEECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence            7777777776664 45667777777777777654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.58  E-value=2.8e-15  Score=155.87  Aligned_cols=138  Identities=30%  Similarity=0.350  Sum_probs=109.9

Q ss_pred             CCCCCcccEEeccCC---CcCcccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCE
Q psy2947          57 PQYFSHAFLLSLSYT---PIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTH  133 (441)
Q Consensus        57 ~~~l~~L~~l~l~~n---~i~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~  133 (441)
                      +..+..|+.|+|++|   .||..++.+++|++|+|++|.|+.+|..|+.+++|+.|+|++|.|+  .+|..++.|++|++
T Consensus       220 ~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~  297 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT--SLPAELGSCFQLKY  297 (727)
T ss_dssp             --CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS--SCCSSGGGGTTCSE
T ss_pred             hccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC--ccChhhcCCCCCCE
Confidence            345788999999998   5677788899999999999999999988999999999999999998  88999999999999


Q ss_pred             EEccCCCCCccchhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHH-H-Hhhccc-ccCCchhhh
Q psy2947         134 LYLDNNLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDE-V-LRKQKK-LHQPSRLQD  205 (441)
Q Consensus       134 L~l~~n~l~~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~-~-l~~~~~-~~~p~~l~~  205 (441)
                      |+|++|.|+.||..|+.+++|+.|+|++|++         .+.+|..+..+..... + +.+|.+ ..+|..+..
T Consensus       298 L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l---------~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~~  363 (727)
T 4b8c_D          298 FYFFDNMVTTLPWEFGNLCNLQFLGVEGNPL---------EKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERRF  363 (727)
T ss_dssp             EECCSSCCCCCCSSTTSCTTCCCEECTTSCC---------CSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---
T ss_pred             EECCCCCCCccChhhhcCCCccEEeCCCCcc---------CCCChHHHhhcchhhhHHhhccCcccCcCccccce
Confidence            9999999999998899999999999999994         3455666655443332 2 666666 455654433

>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A {Rattus norvegicus} PDB: 2e30_A

Probab=99.58  E-value=2e-15  Score=132.65  Aligned_cols=141  Identities=16%  Similarity=0.239  Sum_probs=113.3

Q ss_pred             eecccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHH-HHHhCCCcccHHHHHHHHHhhcCCC-----
Q psy2947         259 FTFKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKK-YLAEKGGKLSFPDFLKVMHTHSKAE-----  330 (441)
Q Consensus       259 ~l~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~-~~~~~~g~i~~~ef~~~~~~~~~~~-----  330 (441)
                      .+++.++..+++.|..+|.+  |.| +.+|+..++ .++..+...++.. ++.+++|.|+++||..++.......     
T Consensus        22 ~ls~~~~~~l~~~F~~~D~d~dG~I-s~~El~~~~-~lg~~~~~~~l~~~~d~~~~g~i~~~EF~~~~~~~~~~~~~~~~   99 (208)
T 2ct9_A           22 GFSHSQITRLYSRFTSLDKGENGTL-SREDFQRIP-ELAINPLGDRIINAFFSEGEDQVNFRGFMRTLAHFRPIEDNEKS   99 (208)
T ss_dssp             CCCHHHHHHHHHHHHHHCTTCSSEE-CTGGGGGCH-HHHTSTTHHHHHHTTSCTTCSCEEHHHHHHHHHTTSCCC-----
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCCcC-cHHHHHHHH-HcCCCCcHHHHHHHHcCCCCCcCcHHHHHHHHHhhccccchhhh
Confidence            45678899999999999975  888 889998864 5666665554433 3357899999999999998664321     


Q ss_pred             ----------CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHH----HHHhCCCCCCcccHHHHHHH
Q psy2947         331 ----------DIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDA----FKAADTTKSGTVPAKYLKHV  396 (441)
Q Consensus       331 ----------~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~----f~~~D~~~~G~is~~ef~~~  396 (441)
                                ...+.++.+|+.+|.|++|.|+.+||..++....+.....+++..+    |+.+|.|+||.|+++||..+
T Consensus       100 ~~~~~~~~~~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~~g~~~s~~~~~~l~~~~~~~~D~d~dG~Is~~EF~~~  179 (208)
T 2ct9_A          100 KDVNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKV  179 (208)
T ss_dssp             ------CCTTSHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHCSSSSSSEEHHHHHHT
T ss_pred             cccccccccccHHHHHHHHHHHHCCCCCCEEcHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHH
Confidence                      1467899999999999999999999999998764445566777776    99999999999999999999


Q ss_pred             HHHhC
Q psy2947         397 LVNWG  401 (441)
Q Consensus       397 l~~~~  401 (441)
                      +...+
T Consensus       180 ~~~~~  184 (208)
T 2ct9_A          180 LEKVD  184 (208)
T ss_dssp             TTTSC
T ss_pred             HhccC
Confidence            97644

>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A

Probab=99.57  E-value=2.4e-14  Score=118.01  Aligned_cols=133  Identities=20%  Similarity=0.317  Sum_probs=115.2

Q ss_pred             ccchHHHHHhhhcccc---CCCccCHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCHHHHHH
Q psy2947         262 KTPYLEFRECFFLFAR---NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVD  338 (441)
Q Consensus       262 ~~~~~~l~~~f~~~d~---~G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~  338 (441)
                      .+++.++++.|..+|.   +|.| +..++..+++.++..++..++..++..-+..|+++||..++..........+.++.
T Consensus        10 ~~~~~~l~~~F~~~D~d~~~G~i-~~~el~~~l~~~g~~~~~~~~~~l~~~~d~~i~~~eF~~~~~~~~~~~~~~~~l~~   88 (146)
T 2qac_A           10 LEEKVDESDVRIYFNEKSSGGKI-SIDNASYNARKLGLAPSSIDEKKIKELYGDNLTYEQYLEYLSICVHDKDNVEELIK   88 (146)
T ss_dssp             HHHHSCHHHHHHHHHHHCBTTBE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHCSEECHHHHHHHHHHTCCTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCccCCCCcc-cHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCcchHHHHHH
Confidence            3466778999999985   5788 89999999999999999999999887433339999999999876666667889999


Q ss_pred             HHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy2947         339 AFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLV  398 (441)
Q Consensus       339 ~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~  398 (441)
                      +|+.+|.|++|.|+.+||+.++... +.....+++..+|+.+  |++|.|+++||.++|.
T Consensus        89 ~F~~~D~d~~G~I~~~el~~~l~~~-g~~~~~~~~~~~~~~~--d~dg~i~~~eF~~~l~  145 (146)
T 2qac_A           89 MFAHFDNNCTGYLTKSQMKNILTTW-GDALTDQEAIDALNAF--SSEDNIDYKLFCEDIL  145 (146)
T ss_dssp             HHHTTCTTCSSEEEHHHHHHHHHHS-SSCCCHHHHHHHHHHH--CSSSEEEHHHHHHHHT
T ss_pred             HHHHhCCCCCCCCCHHHHHHHHHHh-CCCCCHHHHHHHHHHc--CCCCcCcHHHHHHHHh
Confidence            9999999999999999999999876 4456678999999999  9999999999999874

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.57  E-value=8e-15  Score=139.39  Aligned_cols=120  Identities=20%  Similarity=0.305  Sum_probs=98.5

Q ss_pred             CCCCC-ccCC-CCccCCC-CCCCCCCcccEEeccCCCcCcccCCCCCCCEEEccC-CCCCcCCcC-ccCCCCCcEEEccC
Q psy2947          39 CQRNC-SLEV-GGICSHI-WIPQYFSHAFLLSLSYTPIGRRIFKCDTVEVLSLKS-NSLTSLPPD-IGRLTNLRVLCLTD  113 (441)
Q Consensus        39 C~~~c-~~~~-~~~c~~~-~~~~~l~~L~~l~l~~n~i~~~~~~l~~L~~L~l~~-n~l~~lp~~-~~~l~~L~~L~l~~  113 (441)
                      ||..| .|.. ++.|+.. ++              ..||. +..+++|+.|+|++ |.|+.+|+. |..+++|+.|+|++
T Consensus         1 cp~~c~~C~~~~v~~~~~n~l--------------~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~   65 (347)
T 2ifg_A            1 CPDACCPHGSSGLRCTRDGAL--------------DSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK   65 (347)
T ss_dssp             CCSSSCCSSSSCEECCSSCCC--------------TTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCS
T ss_pred             CCCcCccccCCEEEcCCCCCC--------------CccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCC
Confidence            89999 8843 3556543 21              14788 88999999999996 999988865 99999999999999


Q ss_pred             CcCCCCCCchhhhcCCCCCEEEccCCCCCccchhhcCCCCCCEEEccCCcCccCccccccc
Q psy2947         114 NCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYH  174 (441)
Q Consensus       114 n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~  174 (441)
                      |+|+ +..|..|.++++|++|+|++|+|+.+|..+.....|+.|+|.+|++.|.|.+.|+.
T Consensus        66 N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~l~~~~  125 (347)
T 2ifg_A           66 SGLR-FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQ  125 (347)
T ss_dssp             SCCC-EECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCCCCGGGHHHH
T ss_pred             Cccc-eeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCCCccCCCccHHHH
Confidence            9998 55566789999999999999999999854443334999999999999999876643

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.57  E-value=1.8e-14  Score=119.29  Aligned_cols=103  Identities=25%  Similarity=0.285  Sum_probs=90.8

Q ss_pred             CCcccEEeccCCC-----cCcccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEE
Q psy2947          60 FSHAFLLSLSYTP-----IGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHL  134 (441)
Q Consensus        60 l~~L~~l~l~~n~-----i~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L  134 (441)
                      .++|+.|++++|.     +|..+..+++|++|++++|.++.+ ..+..+++|+.|++++|.++ +.+|..+..+++|++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVS-GGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCC-SCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCccc-chHHHHhhhCCCCCEE
Confidence            4789999999984     455667889999999999999987 67999999999999999998 4588878889999999


Q ss_pred             EccCCCCCccc--hhhcCCCCCCEEEccCCcC
Q psy2947         135 YLDNNLLDALP--GFLLSMPQLDTVYRHGNHN  164 (441)
Q Consensus       135 ~l~~n~l~~lp--~~~~~l~~L~~L~l~~N~~  164 (441)
                      ++++|+++.+|  ..+..+++|+.|++++|++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l  125 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV  125 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGG
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcc
Confidence            99999998876  7889999999999999985

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.56  E-value=6.9e-15  Score=136.16  Aligned_cols=146  Identities=21%  Similarity=0.221  Sum_probs=109.0

Q ss_pred             CCCcccEEeccCCCcCc--ccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEc
Q psy2947          59 YFSHAFLLSLSYTPIGR--RIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL  136 (441)
Q Consensus        59 ~l~~L~~l~l~~n~i~~--~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l  136 (441)
                      .+++|+.|++++|.+..  .+..+++|++|++++|.++.+|. +..+++|++|++++|+++  .++ .+..+++|++|++
T Consensus        66 ~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~--~~~-~l~~l~~L~~L~l  141 (291)
T 1h6t_A           66 YLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGIS--DIN-GLVHLPQLESLYL  141 (291)
T ss_dssp             GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCC--CCG-GGGGCTTCCEEEC
T ss_pred             cCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCC--CCh-hhcCCCCCCEEEc
Confidence            46788888888884431  26778888888888888887654 788888888888888887  453 5778888888888


Q ss_pred             cCCCCCccchhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCchhhhhhhhcccccc
Q psy2947         137 DNNLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSRLQDLAVQSVIASK  215 (441)
Q Consensus       137 ~~n~l~~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~l~~l~~l~~l~l~  215 (441)
                      ++|+++.+ ..+..+++|+.|++++|.+...          +. +..++.+..+ +++|.+..+| .+..+++|+.|+++
T Consensus       142 ~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~----------~~-l~~l~~L~~L~L~~N~i~~l~-~l~~l~~L~~L~l~  208 (291)
T 1h6t_A          142 GNNKITDI-TVLSRLTKLDTLSLEDNQISDI----------VP-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELF  208 (291)
T ss_dssp             CSSCCCCC-GGGGGCTTCSEEECCSSCCCCC----------GG-GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEEEE
T ss_pred             cCCcCCcc-hhhccCCCCCEEEccCCccccc----------hh-hcCCCccCEEECCCCcCCCCh-hhccCCCCCEEECc
Confidence            88888777 4577788888888888885332          22 5556666666 7778777776 48888888888888


Q ss_pred             cccCCC
Q psy2947         216 ENFFEP  221 (441)
Q Consensus       216 ~n~~~~  221 (441)
                      +|++..
T Consensus       209 ~n~i~~  214 (291)
T 1h6t_A          209 SQECLN  214 (291)
T ss_dssp             EEEEEC
T ss_pred             CCcccC
Confidence            887654

>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana}

Probab=99.56  E-value=6.2e-15  Score=124.39  Aligned_cols=136  Identities=14%  Similarity=0.267  Sum_probs=110.2

Q ss_pred             eecccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHH----hCCCcccHHHHHHHHHhhcCCCCC
Q psy2947         259 FTFKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLA----EKGGKLSFPDFLKVMHTHSKAEDI  332 (441)
Q Consensus       259 ~l~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~~~~~~  332 (441)
                      .+++.++..+++.|..+|.+  |.| +..|+..+++.++..++..++..++.    +++|.|+++||..++..... ...
T Consensus        20 ~l~~~~~~~l~~~F~~~D~~~~G~i-~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~-~~~   97 (166)
T 2aao_A           20 SLSEEEIAGLKEMFNMIDADKSGQI-TFEELKAGLKRVGANLKESEILDLMQAADVDNSGTIDYKEFIAATLHLNK-IER   97 (166)
T ss_dssp             HSCHHHHHHHHHHHHHHCTTCCSSB-CHHHHHHHGGGGTCCCCHHHHHHHHHHHCTTCCSSBCHHHHHHHHTTCHH-HHT
T ss_pred             hCCHHHHHHHHHHHHHhCCCCCCeE-eHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHHhh-ccc
Confidence            35677889999999999975  889 89999999999998888888877764    68899999999998864321 123


Q ss_pred             HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      .+.+..+|+.+|.|++|.|+.+||..++....   ...+++..+|+.+|.+++|.|+++||..++..
T Consensus        98 ~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~~---~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~~~  161 (166)
T 2aao_A           98 EDHLFAAFTYFDKDGSGYITPDELQQACEEFG---VEDVRIEELMRDVDQDNDGRIDYNEFVAMMQK  161 (166)
T ss_dssp             THHHHHHHHHHCTTCSSSBCHHHHHHHTCC-----------CCHHHHHCTTCSSSBCHHHHHHHHC-
T ss_pred             HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcC---CCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHh
Confidence            47899999999999999999999999987652   33567889999999999999999999999865

>2zfd_A Calcineurin B-like protein 2; calcium binding protein, protein-protein complex, ATP-bindin kinase, nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP: a.39.1.5 PDB: 1uhn_A

Probab=99.56  E-value=4e-14  Score=125.95  Aligned_cols=140  Identities=14%  Similarity=0.186  Sum_probs=110.1

Q ss_pred             eecccchHHHHHhhhccccC----CCccCHHHHHHHHHHcCCCcCHHHH----HHHHHhCCCcccHHHHHHHHHhhcCCC
Q psy2947         259 FTFKTPYLEFRECFFLFARN----GTIKTLDELSVIMRSLGMSPTIAEL----KKYLAEKGGKLSFPDFLKVMHTHSKAE  330 (441)
Q Consensus       259 ~l~~~~~~~l~~~f~~~d~~----G~i~~~~el~~~~~~~~~~~~~~~~----~~~~~~~~g~i~~~ef~~~~~~~~~~~  330 (441)
                      .++..++..+.+.|..+|.+    |.| +.+|+..++.. ........+    ..++.+++|.|+++||..++.......
T Consensus        41 ~ls~~ei~~l~~~F~~~D~d~~~~G~I-~~~El~~~l~~-~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~~~~~~  118 (226)
T 2zfd_A           41 VFSVSEIEALYELFKKISSAVIDDGLI-NKEEFQLALFK-TNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNA  118 (226)
T ss_dssp             SCCHHHHHHHHHHHHHHHTSSSCSSSB-CHHHHHHHHHS-CSSCCCHHHHHHHHHHCSSCSSSBCHHHHHHHHHHTSTTS
T ss_pred             CCCHHHHHHHHHHHHHhCcccCCCCeE-cHHHHHHHHhc-cCcccHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHccCC
Confidence            45678899999999999964    888 89999999886 322222233    333357899999999999998776555


Q ss_pred             CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhh---ccCCCChHH----HHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         331 DIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTH---SKAEDIPKE----VVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       331 ~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~---~~~~~~~~~----~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      ...+.++.+|+.+|.|++|.|+.+||..++...   .+.....++    ++.+|+.+|.|++|.|+++||.+++...
T Consensus       119 ~~~~~l~~~F~~~D~d~~G~Is~~E~~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~EF~~~~~~~  195 (226)
T 2zfd_A          119 PIDDKIHFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDGKIDKEEWRSLVLRH  195 (226)
T ss_dssp             CHHHHHHHHHHHHCTTSSSSEEHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHCSSCSSEECHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHhC
Confidence            667889999999999999999999999998632   233333444    4567789999999999999999999863

>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate cyclase activating protein, GCAP1, GCAP-1, calcium, lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}

Probab=99.56  E-value=3.9e-14  Score=123.26  Aligned_cols=131  Identities=15%  Similarity=0.240  Sum_probs=105.5

Q ss_pred             HHHHHhhhccc---cCCCccCHHHHHHHHHHcCCCcCHH-HHHHHHH----hCCCcccHHHHHHHHHhhcCCCCCHHHHH
Q psy2947         266 LEFRECFFLFA---RNGTIKTLDELSVIMRSLGMSPTIA-ELKKYLA----EKGGKLSFPDFLKVMHTHSKAEDIPKEVV  337 (441)
Q Consensus       266 ~~l~~~f~~~d---~~G~i~~~~el~~~~~~~~~~~~~~-~~~~~~~----~~~g~i~~~ef~~~~~~~~~~~~~~~~~~  337 (441)
                      .+++++|..+|   .+|.| +..++..+++.++..+... ++..++.    +++|.|+++||..++..... ....+.++
T Consensus        14 ~el~~~f~~fd~~~~~G~i-~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~G~I~~~Ef~~~~~~~~~-~~~~~~~~   91 (198)
T 2r2i_A           14 TECHQWYKKFMTECPSGQL-TLYEFKQFFGLKNLSPSANKYVEQMFETFDFNKDGYIDFMEYVAALSLVLK-GKVDQKLR   91 (198)
T ss_dssp             SCHHHHHHHHHHHCTTSEE-CHHHHHHHHTCCSCCHHHHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHSS-CCHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCcC-CHHHHHHHHHHhCCCcchHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHHcc-CchHHHHH
Confidence            34556666666   46889 8999999999888766543 3555553    68999999999999987653 34578899


Q ss_pred             HHHHhhcCCCCCcccHHHHHHHHHhhcc-----CCCC-hHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy2947         338 DAFKAADTTKSGKLSFPDFLKVMHTHSK-----AEDI-PKEVVDAFKAADTTKSGTVPAKYLKHVLV  398 (441)
Q Consensus       338 ~~f~~~D~d~~g~i~~~ef~~~~~~~~~-----~~~~-~~~~~~~f~~~D~~~~G~is~~ef~~~l~  398 (441)
                      .+|+.+|.|++|.|+++||..++.....     .... .+.+..+|+.+|.|++|.|+++||+.++.
T Consensus        92 ~~F~~~D~d~~G~I~~~Ef~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~  158 (198)
T 2r2i_A           92 WYFKLYDVDGNGCIDRGELLNIIKAIRAINRCNEAMTAEEFTNMVFDKIDINGDGELSLEEFMEGVQ  158 (198)
T ss_dssp             HHHHHHCTTCSSCEEHHHHHHHHHHTTGGGGSSSCCCHHHHHHHHHHHHCTTCSSEECHHHHHHHHT
T ss_pred             HHHHHhcCCCCCcCcHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence            9999999999999999999999987631     2223 35589999999999999999999999985

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.56  E-value=8.7e-15  Score=146.31  Aligned_cols=136  Identities=19%  Similarity=0.232  Sum_probs=116.4

Q ss_pred             cccchHHHHHhhhccccC--CCccCHHHHHHHHHHc--------CCCcCHHHHHHHHH----hCCCcccHHHHHHHHHhh
Q psy2947         261 FKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSL--------GMSPTIAELKKYLA----EKGGKLSFPDFLKVMHTH  326 (441)
Q Consensus       261 ~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~--------~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~  326 (441)
                      +.+++.+++++|..+|.+  |.| +.+|+..+++.+        +..++..++..++.    +++|.|+++||..++...
T Consensus       350 ~~~~~~~l~~~F~~~D~d~dG~I-~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~~  428 (504)
T 3q5i_A          350 TLEERKELTDIFKKLDKNGDGQL-DKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFDKNGYIEYSEFISVCMDK  428 (504)
T ss_dssp             CHHHHHHHHHHHHHHCTTCSSEE-CHHHHHHHHHHHHHHC--CCSCCCHHHHHHHHHHHHCTTCSSSEEHHHHHHHHSCH
T ss_pred             cHHHHHHHHHHHHeeCCCCCCeE-cHHHHHHHHHHhhhcccccccccccHHHHHHHHHHhCCCCCCcEeHHHHHHHHHhh
Confidence            678889999999999986  888 899999998887        44666777777664    689999999999988754


Q ss_pred             cCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhC
Q psy2947         327 SKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWG  401 (441)
Q Consensus       327 ~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~  401 (441)
                       ......+.++.+|+.+|.|++|.|+.+||..++..   ....+++++++|+.+|.|+||.|+++||.++|...+
T Consensus       429 -~~~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~---~~~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~~~  499 (504)
T 3q5i_A          429 -QILFSEERLRRAFNLFDTDKSGKITKEELANLFGL---TSISEKTWNDVLGEADQNKDNMIDFDEFVSMMHKIC  499 (504)
T ss_dssp             -HHHTCHHHHHHHHHHHCTTCCSEECHHHHHHHTTC---SCCCHHHHHHHHHTTCSSCSSSEEHHHHHHHHHHHC
T ss_pred             -hcccCHHHHHHHHHHhcCCCCCcCcHHHHHHHHhh---CCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHhc
Confidence             22345788999999999999999999999998865   235578999999999999999999999999999875

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.56  E-value=6.7e-15  Score=150.67  Aligned_cols=173  Identities=16%  Similarity=0.155  Sum_probs=129.6

Q ss_pred             cCCCCCccCC---CCccCCCC---CCCCC-CcccEEeccCCCc----CcccCCCCCCCEEEccCCCCCcC-CcCccCCCC
Q psy2947          38 ACQRNCSLEV---GGICSHIW---IPQYF-SHAFLLSLSYTPI----GRRIFKCDTVEVLSLKSNSLTSL-PPDIGRLTN  105 (441)
Q Consensus        38 ~C~~~c~~~~---~~~c~~~~---~~~~l-~~L~~l~l~~n~i----~~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~  105 (441)
                      .|+..|.|..   .+.|...+   +|..+ .+++.|++++|.|    |..+..+++|++|+|++|+++.+ |..|..+++
T Consensus         3 ~~~~~C~~~~~~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~   82 (606)
T 3t6q_A            3 SSDQKCIEKEVNKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHR   82 (606)
T ss_dssp             ---CCCEEEETTTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTT
T ss_pred             cccCceecccCCceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccc
Confidence            3677788852   26677643   34433 5789999999954    46788999999999999999965 566999999


Q ss_pred             CcEEEccCCcCCCCCCchhhhcCCCCCEEEccCCCCCcc-chhhcCCCCCCEEEccCCcCccCccccccccccccccccc
Q psy2947         106 LRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDAL-PGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRST  184 (441)
Q Consensus       106 L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l  184 (441)
                      |++|++++|.++ +..|..++.+++|++|++++|.++.+ |..++.+++|++|++++|.+....        +|..+ .+
T Consensus        83 L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~--------~~~~~-~l  152 (606)
T 3t6q_A           83 LDTLVLTANPLI-FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIK--------LPKGF-PT  152 (606)
T ss_dssp             CCEEECTTCCCS-EECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCC--------CCTTC-CC
T ss_pred             cCeeeCCCCccc-ccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccC--------ccccc-CC
Confidence            999999999998 56677899999999999999999888 577899999999999999975432        12222 24


Q ss_pred             chhHHH-HhhcccccC-Cchhhhhhhhc--ccccccccCC
Q psy2947         185 STRDEV-LRKQKKLHQ-PSRLQDLAVQS--VIASKENFFE  220 (441)
Q Consensus       185 ~~~~~~-l~~~~~~~~-p~~l~~l~~l~--~l~l~~n~~~  220 (441)
                      +.+..+ +.+|.+..+ |..+..++.++  .+++++|.+.
T Consensus       153 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~  192 (606)
T 3t6q_A          153 EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA  192 (606)
T ss_dssp             TTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred             cccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence            455555 666776555 45577777777  6777777654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.56  E-value=6.3e-15  Score=134.31  Aligned_cols=145  Identities=19%  Similarity=0.168  Sum_probs=114.2

Q ss_pred             CCCcccEEeccCCCcC--cccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEc
Q psy2947          59 YFSHAFLLSLSYTPIG--RRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL  136 (441)
Q Consensus        59 ~l~~L~~l~l~~n~i~--~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l  136 (441)
                      .+++|+.|++++|.|.  +.+..+++|+.|+|++|+++.+|+ +..+++|+.|++++|+++  .+|. +.. ++|++|++
T Consensus        39 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~--~l~~-~~~-~~L~~L~L  113 (263)
T 1xeu_A           39 ELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLK--NLNG-IPS-ACLSRLFL  113 (263)
T ss_dssp             HHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCS--CCTT-CCC-SSCCEEEC
T ss_pred             hcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccC--CcCc-ccc-CcccEEEc
Confidence            4678889999988442  256778899999999999998877 888999999999999987  5665 333 88999999


Q ss_pred             cCCCCCccchhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCchhhhhhhhcccccc
Q psy2947         137 DNNLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSRLQDLAVQSVIASK  215 (441)
Q Consensus       137 ~~n~l~~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~l~~l~~l~~l~l~  215 (441)
                      ++|+|+.+| .+..+++|+.|++++|++...          + .+..++.+..+ +++|.+..+ ..+..++.|+.++++
T Consensus       114 ~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~----------~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~  180 (263)
T 1xeu_A          114 DNNELRDTD-SLIHLKNLEILSIRNNKLKSI----------V-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLT  180 (263)
T ss_dssp             CSSCCSBSG-GGTTCTTCCEEECTTSCCCBC----------G-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEE
T ss_pred             cCCccCCCh-hhcCcccccEEECCCCcCCCC----------h-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCC
Confidence            999998886 478889999999999986432          2 35556666666 778888777 578888899999999


Q ss_pred             cccCCC
Q psy2947         216 ENFFEP  221 (441)
Q Consensus       216 ~n~~~~  221 (441)
                      +|++..
T Consensus       181 ~N~~~~  186 (263)
T 1xeu_A          181 GQKCVN  186 (263)
T ss_dssp             EEEEEC
T ss_pred             CCcccC
Confidence            988765

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.56  E-value=1.9e-14  Score=124.67  Aligned_cols=112  Identities=20%  Similarity=0.253  Sum_probs=97.0

Q ss_pred             CcccEEeccCCCc---Cc--ccCCCCCCCEEEccCCCCCcC-CcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEE
Q psy2947          61 SHAFLLSLSYTPI---GR--RIFKCDTVEVLSLKSNSLTSL-PPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHL  134 (441)
Q Consensus        61 ~~L~~l~l~~n~i---~~--~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L  134 (441)
                      .+|+.|++++|.|   +.  .+..+++|++|+|++|+|+.+ |..|..+++|++|++++|+|+ +..|..+..+++|++|
T Consensus        29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L  107 (192)
T 1w8a_A           29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTL  107 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCC-EECSSSSTTCTTCCEE
T ss_pred             CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCC-ccCHHHhcCCCCCCEE
Confidence            4899999999954   33  377899999999999999976 566999999999999999998 4445568999999999


Q ss_pred             EccCCCCCcc-chhhcCCCCCCEEEccCCcCccCcccccc
Q psy2947         135 YLDNNLLDAL-PGFLLSMPQLDTVYRHGNHNYFKSTFMWY  173 (441)
Q Consensus       135 ~l~~n~l~~l-p~~~~~l~~L~~L~l~~N~~~~~~~~~~~  173 (441)
                      +|++|+|+.+ |..+..+++|++|++++|++.+.+.+.|+
T Consensus       108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~  147 (192)
T 1w8a_A          108 NLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF  147 (192)
T ss_dssp             ECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH
T ss_pred             ECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHH
Confidence            9999999866 68899999999999999999988866543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.55  E-value=6.5e-15  Score=136.37  Aligned_cols=146  Identities=22%  Similarity=0.249  Sum_probs=125.3

Q ss_pred             CCCcccEEeccCCCcC--cccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEc
Q psy2947          59 YFSHAFLLSLSYTPIG--RRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL  136 (441)
Q Consensus        59 ~l~~L~~l~l~~n~i~--~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l  136 (441)
                      .+++|+.|++++|.+.  +.+..+++|++|++++|+++.+++ +..+++|+.|++++|.++  .+| .+..+++|++|++
T Consensus        44 ~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~--~~~-~l~~l~~L~~L~L  119 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVK--DLS-SLKDLKKLKSLSL  119 (291)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC--CGG-GGTTCTTCCEEEC
T ss_pred             hcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCC--CCh-hhccCCCCCEEEC
Confidence            4788999999999553  347789999999999999998887 999999999999999998  565 4899999999999


Q ss_pred             cCCCCCccchhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCchhhhhhhhcccccc
Q psy2947         137 DNNLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSRLQDLAVQSVIASK  215 (441)
Q Consensus       137 ~~n~l~~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~l~~l~~l~~l~l~  215 (441)
                      ++|+++.++ .+..+++|+.|++++|.+...           ..+..++.+..+ +++|.+..+++ +..++.|+.|+++
T Consensus       120 ~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~-----------~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~  186 (291)
T 1h6t_A          120 EHNGISDIN-GLVHLPQLESLYLGNNKITDI-----------TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLS  186 (291)
T ss_dssp             TTSCCCCCG-GGGGCTTCCEEECCSSCCCCC-----------GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred             CCCcCCCCh-hhcCCCCCCEEEccCCcCCcc-----------hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECC
Confidence            999999885 578899999999999996432           345666677777 88899988886 9999999999999


Q ss_pred             cccCCC
Q psy2947         216 ENFFEP  221 (441)
Q Consensus       216 ~n~~~~  221 (441)
                      +|.+..
T Consensus       187 ~N~i~~  192 (291)
T 1h6t_A          187 KNHISD  192 (291)
T ss_dssp             SSCCCB
T ss_pred             CCcCCC
Confidence            998764

>3a8r_A Putative uncharacterized protein; EF-hand, membrane, oxidoreductase, transmembrane, calcium BI protein; 2.40A {Oryza sativa japonica group}

Probab=99.55  E-value=2.8e-14  Score=121.97  Aligned_cols=133  Identities=11%  Similarity=0.163  Sum_probs=107.1

Q ss_pred             ccchHHHHHhhhccccCCCccCHHHHHHHHHHcCCCcCHHHHHHHHH-------hCCCcccHHHHHHHHHhhcCCCCCHH
Q psy2947         262 KTPYLEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLA-------EKGGKLSFPDFLKVMHTHSKAEDIPK  334 (441)
Q Consensus       262 ~~~~~~l~~~f~~~d~~G~i~~~~el~~~~~~~~~~~~~~~~~~~~~-------~~~g~i~~~ef~~~~~~~~~~~~~~~  334 (441)
                      ..++.++++.|..+|.+|.| +.+++..++   +..++..++..++.       +++|.|+++||..++..... ....+
T Consensus        24 ~~~~~~~~~~F~~~D~dG~I-~~~el~~~l---g~~~~~~~~~~i~~~~d~~~~~~~~~i~~~ef~~~~~~~~~-~~~~~   98 (179)
T 3a8r_A           24 NDGWAAVEKRFNQLQVDGVL-LRSRFGKCI---GMDGSDEFAVQMFDSLARKRGIVKQVLTKDELKDFYEQLTD-QGFDN   98 (179)
T ss_dssp             CCCHHHHHHHHHHHCBTTBE-EGGGHHHHH---TCCSCHHHHHHHHHHHHHHHTCCSSEECHHHHHHHHHHHHC-CCHHH
T ss_pred             hhhHHHHHHHHhccCCCCCC-cHHHHHHHH---CCCCcHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHcC-CCHHH
Confidence            35688999999999988999 789998854   56666665555542       35789999999998876543 34568


Q ss_pred             HHHHHHHhhcCCCCCcccHHHHHHHHH-hhccCCC------ChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         335 EVVDAFKAADTTKSGKLSFPDFLKVMH-THSKAED------IPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       335 ~~~~~f~~~D~d~~g~i~~~ef~~~~~-~~~~~~~------~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      .++.+|+.||.|++|+|+.+|+..++. .+.....      ..++++.+|+.+|.|++|.|+++||..++..
T Consensus        99 ~l~~~F~~~D~d~dG~Is~~El~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~  170 (179)
T 3a8r_A           99 RLRTFFDMVDKNADGRLTAEEVKEIIALSASANKLSKIKERADEYTALIMEELDPTNLGYIEMEDLEALLLQ  170 (179)
T ss_dssp             HHHHHHHHHCTTCSSCBCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSTTCCSEECHHHHHHHHC-
T ss_pred             HHHHHHHHHCCCCCCcCCHHHHHHHHHHHhccccccccccchHHHHHHHHHHhCCCCCCcCcHHHHHHHHHh
Confidence            899999999999999999999999997 5422102      4678999999999999999999999999865

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.55  E-value=7.7e-15  Score=149.83  Aligned_cols=147  Identities=16%  Similarity=0.177  Sum_probs=115.8

Q ss_pred             CCcccEEeccCC---CcCcc-cCCCCCCCEEEccCCCCCcCCc-CccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEE
Q psy2947          60 FSHAFLLSLSYT---PIGRR-IFKCDTVEVLSLKSNSLTSLPP-DIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHL  134 (441)
Q Consensus        60 l~~L~~l~l~~n---~i~~~-~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L  134 (441)
                      +.+++.+++++|   .+|.. +..+++|++|+|++|.++.+|+ .|+.+++|+.|+|++|.++ +..|..++.+++|++|
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCEE
Confidence            578899999999   45544 4678999999999999997766 6999999999999999998 5555567999999999


Q ss_pred             EccCCCCCccchh-hcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCchhhhhhhhccc
Q psy2947         135 YLDNNLLDALPGF-LLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSRLQDLAVQSVI  212 (441)
Q Consensus       135 ~l~~n~l~~lp~~-~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~l~~l~~l~~l  212 (441)
                      +|++|.|+.+|.. |+.+++|++|++++|.+..         ..|..+..++.+..+ +.+|.+..+|  +..++.|..+
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~---------~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L  197 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER---------IEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHA  197 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB---------CCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEE
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCC---------CChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhh
Confidence            9999999999854 6899999999999999633         335567777777766 7777776665  3444555554


Q ss_pred             cccccc
Q psy2947         213 ASKENF  218 (441)
Q Consensus       213 ~l~~n~  218 (441)
                      ++++|.
T Consensus       198 ~l~~n~  203 (597)
T 3oja_B          198 NVSYNL  203 (597)
T ss_dssp             ECCSSC
T ss_pred             hcccCc
Confidence            444443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.55  E-value=7.6e-15  Score=149.04  Aligned_cols=179  Identities=13%  Similarity=0.125  Sum_probs=96.4

Q ss_pred             CCCcccEEeccCCCc------CcccCCCCCCCEEEccCCCCCcCCcCccC-------------------------CCCCc
Q psy2947          59 YFSHAFLLSLSYTPI------GRRIFKCDTVEVLSLKSNSLTSLPPDIGR-------------------------LTNLR  107 (441)
Q Consensus        59 ~l~~L~~l~l~~n~i------~~~~~~l~~L~~L~l~~n~l~~lp~~~~~-------------------------l~~L~  107 (441)
                      .+++|+.|++++|.+      |..+..+++|++|++++|.++.+|..+..                         +++|+
T Consensus       345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  424 (570)
T 2z63_A          345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI  424 (570)
T ss_dssp             BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCC
T ss_pred             cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCC
Confidence            355666666666533      22334455555555555555544444444                         44455


Q ss_pred             EEEccCCcCCCCCCchhhhcCCCCCEEEccCCCCC--ccchhhcCCCCCCEEEccCCcCccCcccccccccccccccccc
Q psy2947         108 VLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD--ALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTS  185 (441)
Q Consensus       108 ~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~--~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~  185 (441)
                      .|++++|.+. +..|..+..+++|++|++++|.+.  .+|..+..+++|+.|++++|++         ....|..+..++
T Consensus       425 ~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l---------~~~~~~~~~~l~  494 (570)
T 2z63_A          425 YLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL---------EQLSPTAFNSLS  494 (570)
T ss_dssp             EEECTTSCCE-ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC---------CEECTTTTTTCT
T ss_pred             EEeCcCCccc-ccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCcc---------ccCChhhhhccc
Confidence            5555555444 333444445555555555555543  3444455555555555555542         223356666777


Q ss_pred             hhHHH-HhhcccccCCc-hhhhhhhhcccccccccCCCCCCCchhh-hHHHhhhcCCcccccccC
Q psy2947         186 TRDEV-LRKQKKLHQPS-RLQDLAVQSVIASKENFFEPGLFPGPLV-DYIAREYNQYHVCHYCNS  247 (441)
Q Consensus       186 ~~~~~-l~~~~~~~~p~-~l~~l~~l~~l~l~~n~~~~~~~p~~~~-~~l~~~~~~~~~~~~~~~  247 (441)
                      .+..+ +++|.+..+|+ .+..++.|+.+++++|++.+..-..... .|+.........-+.|..
T Consensus       495 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~~~~~~~~~~~~C~~  559 (570)
T 2z63_A          495 SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSG  559 (570)
T ss_dssp             TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTGGGEESCCBBTT
T ss_pred             CCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHHHHHHHhccccCCCchhhCC
Confidence            77666 77777766654 4677888888888888887643223333 666554333333334543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.55  E-value=7e-15  Score=145.09  Aligned_cols=155  Identities=16%  Similarity=0.181  Sum_probs=124.2

Q ss_pred             CCCCEEEccCCCCCc-CCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEccCCCCCcc-chhhcCCCCCCEEE
Q psy2947          81 DTVEVLSLKSNSLTS-LPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDAL-PGFLLSMPQLDTVY  158 (441)
Q Consensus        81 ~~L~~L~l~~n~l~~-lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~  158 (441)
                      ++|+.|++++|.++. +|..+..+++|+.|++++|.++ +..|..+..+++|++|++++|.++.+ |..+..+++|+.|+
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  353 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD  353 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCCCccc-ccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence            579999999999995 4566999999999999999998 55567889999999999999999887 47889999999999


Q ss_pred             ccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCch-hhhhhhhcccccccccCCCCCCC--chhhhHHHh
Q psy2947         159 RHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSR-LQDLAVQSVIASKENFFEPGLFP--GPLVDYIAR  234 (441)
Q Consensus       159 l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~-l~~l~~l~~l~l~~n~~~~~~~p--~~~~~~l~~  234 (441)
                      +++|.+.         ...|..+..++.+..+ +++|.+..+|.. +..++.|+.+++++|++.+. .|  ..+..|+..
T Consensus       354 Ls~N~l~---------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~l~~~l~~  423 (455)
T 3v47_A          354 LSYNHIR---------ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS-CPRIDYLSRWLNK  423 (455)
T ss_dssp             CCSSCCC---------EECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-TTTTHHHHHHHHH
T ss_pred             CCCCccc---------ccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccC-CCcchHHHHHHHh
Confidence            9999952         3346778888888888 899999888864 58899999999999999864 44  345567765


Q ss_pred             hhcCCccccccc
Q psy2947         235 EYNQYHVCHYCN  246 (441)
Q Consensus       235 ~~~~~~~~~~~~  246 (441)
                      ..........|.
T Consensus       424 ~~~~~~~~~~c~  435 (455)
T 3v47_A          424 NSQKEQGSAKCS  435 (455)
T ss_dssp             TTTTEESCCBBT
T ss_pred             Cccceeeeeeec
Confidence            543333333343

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.55  E-value=2.4e-15  Score=140.86  Aligned_cols=161  Identities=14%  Similarity=0.054  Sum_probs=109.7

Q ss_pred             CCCcccEEeccCCC----cCccc--CCCCCCCEEEccCCCCCcCCcCccCC-----CCCcEEEccCCcCCCCCCchhhhc
Q psy2947          59 YFSHAFLLSLSYTP----IGRRI--FKCDTVEVLSLKSNSLTSLPPDIGRL-----TNLRVLCLTDNCLQNASIPFTLTF  127 (441)
Q Consensus        59 ~l~~L~~l~l~~n~----i~~~~--~~l~~L~~L~l~~n~l~~lp~~~~~l-----~~L~~L~l~~n~l~~~~~p~~~~~  127 (441)
                      .+++|+.|++++|.    +|..+  ..+++|++|+|++|+++.+|..+..+     ++|++|++++|+++ +..|..++.
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~-~~~~~~~~~  171 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL-NFSCEQVRV  171 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCC-CCCTTTCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCc-cchHHHhcc
Confidence            36788888888883    45544  67888888888888888777666666     88888888888887 444467788


Q ss_pred             CCCCCEEEccCCCCCc---cchhh--cCCCCCCEEEccCCcCccCcccccccccccc-cccccchhHHH-HhhcccccCC
Q psy2947         128 CKNLTHLYLDNNLLDA---LPGFL--LSMPQLDTVYRHGNHNYFKSTFMWYHSDIHA-RIRSTSTRDEV-LRKQKKLHQP  200 (441)
Q Consensus       128 l~~L~~L~l~~n~l~~---lp~~~--~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~-~l~~l~~~~~~-l~~~~~~~~p  200 (441)
                      +++|++|++++|++..   +|..+  ..+++|++|++++|.+....       .++. .+..++.+..+ +++|.+...+
T Consensus       172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~-------~~~~~~~~~l~~L~~L~Ls~N~l~~~~  244 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS-------GVCSALAAARVQLQGLDLSHNSLRDAA  244 (312)
T ss_dssp             CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHH-------HHHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred             CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchH-------HHHHHHHhcCCCCCEEECCCCcCCccc
Confidence            8888888888888643   34344  77888888888888864211       1221 22344455555 6677775543


Q ss_pred             --chhhhhhhhcccccccccCCCCCCCchhh
Q psy2947         201 --SRLQDLAVQSVIASKENFFEPGLFPGPLV  229 (441)
Q Consensus       201 --~~l~~l~~l~~l~l~~n~~~~~~~p~~~~  229 (441)
                        +.+..++.|+.|++++|.+.  .+|..+.
T Consensus       245 ~~~~~~~l~~L~~L~Ls~N~l~--~ip~~~~  273 (312)
T 1wwl_A          245 GAPSCDWPSQLNSLNLSFTGLK--QVPKGLP  273 (312)
T ss_dssp             CCSCCCCCTTCCEEECTTSCCS--SCCSSCC
T ss_pred             chhhhhhcCCCCEEECCCCccC--hhhhhcc
Confidence              34555677888888887765  3666544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.54  E-value=5.8e-14  Score=125.19  Aligned_cols=111  Identities=28%  Similarity=0.333  Sum_probs=99.5

Q ss_pred             CCCCCcccEEeccCCCc---Cc-ccCCCCCCCEEEccCCCCCcCCcC-ccCCCCCcEEEccCCcCCCCCCchhhhcCCCC
Q psy2947          57 PQYFSHAFLLSLSYTPI---GR-RIFKCDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPFTLTFCKNL  131 (441)
Q Consensus        57 ~~~l~~L~~l~l~~n~i---~~-~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L  131 (441)
                      +..+++|+.|+|++|.|   |. .+..+++|++|+|++|+|+.+|.. |..+++|+.|++++|+++  .+|..+..+++|
T Consensus        60 ~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L  137 (229)
T 3e6j_A           60 FDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT--ELPRGIERLTHL  137 (229)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--SCCTTGGGCTTC
T ss_pred             hhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc--ccCcccccCCCC
Confidence            34688999999999954   43 357899999999999999988877 789999999999999998  899999999999


Q ss_pred             CEEEccCCCCCccc-hhhcCCCCCCEEEccCCcCccCcc
Q psy2947         132 THLYLDNNLLDALP-GFLLSMPQLDTVYRHGNHNYFKST  169 (441)
Q Consensus       132 ~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~N~~~~~~~  169 (441)
                      ++|+|++|+|+.+| ..+..+++|+.|++++|++.+.|.
T Consensus       138 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          138 THLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             SEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            99999999999988 568889999999999999988773

>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2ju0_A

Probab=99.54  E-value=4.5e-14  Score=121.92  Aligned_cols=123  Identities=17%  Similarity=0.193  Sum_probs=106.3

Q ss_pred             CCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCC-CCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcc
Q psy2947         310 KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTT-KSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTV  388 (441)
Q Consensus       310 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d-~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i  388 (441)
                      +.+.++.+++..+....   ..+.++++.+|+.||.+ ++|.|+++||..++..........+.++.+|+.+|.+++|.|
T Consensus         4 ~~~~l~~~~l~~l~~~~---~~~~~~i~~~~~~fd~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~G~i   80 (190)
T 1fpw_A            4 KTSKLSKDDLTCLKQST---YFDRREIQQWHKGFLRDCPSGQLAREDFVKIYKQFFPFGSPEDFANHLFTVFDKDNNGFI   80 (190)
T ss_dssp             CSCCSTTHHHHHHTTTC---CSTHHHHHHHHHHHHHHCTTCCEEHHHHHHHHHHHCTTSCCSHHHHHHHHTCCSSCSSEE
T ss_pred             ccCCCCHHHHHHHHHhc---CCCHHHHHHHHHHHHHHCCCCcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHCCCCCCcE
Confidence            45567777777766532   45788999999999998 899999999999998874433446779999999999999999


Q ss_pred             cHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         389 PAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       389 s~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      +++||..++...+...+.++++.+|+.+|.|++|.|+++||..++..
T Consensus        81 ~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~ef~~~~~~  127 (190)
T 1fpw_A           81 HFEEFITVLSTTSRGTLEEKLSWAFELYDLNHDGYITFDEMLTIVAS  127 (190)
T ss_dssp             CHHHHHHHHHHHSCCCSTHHHHHHHHHHCSSCSSEEEHHHHHHHHHH
T ss_pred             eHHHHHHHHHHHccCCcHHHHHHHHHHhcCCCCCcCcHHHHHHHHHH
Confidence            99999999999988888999999999999999999999999998865

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.54  E-value=3.2e-14  Score=121.43  Aligned_cols=102  Identities=23%  Similarity=0.162  Sum_probs=86.7

Q ss_pred             CCcccEEeccCCCcC--cccCCCC-CCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhh-hcCCCCCEEE
Q psy2947          60 FSHAFLLSLSYTPIG--RRIFKCD-TVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTL-TFCKNLTHLY  135 (441)
Q Consensus        60 l~~L~~l~l~~n~i~--~~~~~l~-~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~-~~l~~L~~L~  135 (441)
                      +.+|+.|++++|.+.  +.+..+. +|++|++++|.++.+ +.+..+++|++|++++|.++  .+|..+ ..+++|++|+
T Consensus        18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~   94 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRIC--RIGEGLDQALPDLTELI   94 (176)
T ss_dssp             TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCC--EECSCHHHHCTTCCEEE
T ss_pred             cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCccc--ccCcchhhcCCCCCEEE
Confidence            578899999999554  2244444 899999999999987 67899999999999999998  677655 8999999999


Q ss_pred             ccCCCCCccch--hhcCCCCCCEEEccCCcC
Q psy2947         136 LDNNLLDALPG--FLLSMPQLDTVYRHGNHN  164 (441)
Q Consensus       136 l~~n~l~~lp~--~~~~l~~L~~L~l~~N~~  164 (441)
                      +++|+|+.+|.  .+..+++|+.|++++|++
T Consensus        95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i  125 (176)
T 1a9n_A           95 LTNNSLVELGDLDPLASLKSLTYLCILRNPV  125 (176)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred             CCCCcCCcchhhHhhhcCCCCCEEEecCCCC
Confidence            99999999986  788999999999999995

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.53  E-value=4.6e-15  Score=151.90  Aligned_cols=152  Identities=15%  Similarity=0.126  Sum_probs=95.1

Q ss_pred             CCCcccEEeccCCCc------CcccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCc-hhhhcCCCC
Q psy2947          59 YFSHAFLLSLSYTPI------GRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIP-FTLTFCKNL  131 (441)
Q Consensus        59 ~l~~L~~l~l~~n~i------~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p-~~~~~l~~L  131 (441)
                      .+++|+.|++++|.+      |..+..+++|++|++++|.++.+|..+..+++|+.|++++|.+. +..| ..+..+++|
T Consensus       348 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L  426 (606)
T 3vq2_A          348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLK-RVTEFSAFLSLEKL  426 (606)
T ss_dssp             CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEE-STTTTTTTTTCTTC
T ss_pred             cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccC-CccChhhhhccccC
Confidence            467788888888743      45566777788888888777777766777777777777777776 3444 356777777


Q ss_pred             CEEEccCCCCCc-cchhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccC-Cchhhhhhh
Q psy2947         132 THLYLDNNLLDA-LPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQ-PSRLQDLAV  208 (441)
Q Consensus       132 ~~L~l~~n~l~~-lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~-p~~l~~l~~  208 (441)
                      ++|++++|.+.. +|..+..+++|+.|++++|.+..        ..+|..+..++.+..+ +++|.+..+ |..+..++.
T Consensus       427 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  498 (606)
T 3vq2_A          427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD--------NTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR  498 (606)
T ss_dssp             CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG--------GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             CEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCC--------cchHHhhccCCCCCEEECCCCcCCccChhhhccccc
Confidence            777777777754 45666777777777777776421        0123444444444444 444444332 333445555


Q ss_pred             hcccccccccC
Q psy2947         209 QSVIASKENFF  219 (441)
Q Consensus       209 l~~l~l~~n~~  219 (441)
                      |+.|++++|.+
T Consensus       499 L~~L~Ls~N~l  509 (606)
T 3vq2_A          499 LQLLNMSHNNL  509 (606)
T ss_dssp             CCEEECCSSCC
T ss_pred             CCEEECCCCcC
Confidence            55555555543

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.53  E-value=1e-14  Score=145.46  Aligned_cols=137  Identities=18%  Similarity=0.238  Sum_probs=114.7

Q ss_pred             cccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCC--------CcCHHHHHHHHH----hCCCcccHHHHHHHHHhh
Q psy2947         261 FKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGM--------SPTIAELKKYLA----EKGGKLSFPDFLKVMHTH  326 (441)
Q Consensus       261 ~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~--------~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~  326 (441)
                      ++.++.+++++|..+|.+  |.| +.+|+..+++.++.        .++..++..++.    +++|.|+++||..++...
T Consensus       341 ~~~~~~~l~~~F~~~D~d~dG~I-~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~~G~I~~~EF~~~~~~~  419 (494)
T 3lij_A          341 SQEETKELTDIFRHIDKNGDGQL-DRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFDRNGYIDYSEFVTVAMDR  419 (494)
T ss_dssp             CHHHHHHHHHHHHHHCTTCSSEE-CHHHHHHTTHHHHSSCCCCC--CHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHSCH
T ss_pred             cHHHHHHHHHHHHHhCcCCCCeE-cHHHHHHHHHHhcccccccccccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHhh
Confidence            678889999999999986  888 89999999988753        344666666664    789999999999998644


Q ss_pred             cCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCC
Q psy2947         327 SKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGE  402 (441)
Q Consensus       327 ~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~  402 (441)
                       ......+.+..+|+.||.|++|.|+.+||..++..   ....+++++.+|+.+|.|+||.|+++||.++|+.++.
T Consensus       420 -~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~---~~~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~~~~  491 (494)
T 3lij_A          420 -KSLLSKDKLESAFQKFDQDGNGKISVDELASVFGL---DHLESKTWKEMISGIDSNNDGDVDFEEFCKMIQKLCS  491 (494)
T ss_dssp             -HHHTCHHHHHHHHHHHCTTCSSEECHHHHHHHC-C---CSCCCHHHHHHHHTTCSSSSSSEEHHHHHHHHHHHSS
T ss_pred             -hccccHHHHHHHHHHHCCCCCCcCCHHHHHHHHHh---cCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhhcc
Confidence             22345788999999999999999999999998865   3445688999999999999999999999999998763

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.53  E-value=2.9e-14  Score=136.24  Aligned_cols=160  Identities=23%  Similarity=0.266  Sum_probs=128.7

Q ss_pred             CccCCCCccCCCCCCCCCCcccEEeccCC---CcCcccCCCCCCCEEEccCCCCCcCCcC-cc-CCCCCcEEEccCCcCC
Q psy2947          43 CSLEVGGICSHIWIPQYFSHAFLLSLSYT---PIGRRIFKCDTVEVLSLKSNSLTSLPPD-IG-RLTNLRVLCLTDNCLQ  117 (441)
Q Consensus        43 c~~~~~~~c~~~~~~~~l~~L~~l~l~~n---~i~~~~~~l~~L~~L~l~~n~l~~lp~~-~~-~l~~L~~L~l~~n~l~  117 (441)
                      ..|...-.|.          -+.++++++   .||..+.  +.++.|+|++|+|+.++.. +. .+++|+.|+|++|+|+
T Consensus        10 ~~Cp~~C~C~----------~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~   77 (361)
T 2xot_A           10 VSCPANCLCA----------SNILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN   77 (361)
T ss_dssp             TTCCTTCEEE----------TTEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC
T ss_pred             CCCCCCCEEC----------CCEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC
Confidence            4566555564          257888888   4565544  4689999999999988776 66 8999999999999998


Q ss_pred             CCCCc-hhhhcCCCCCEEEccCCCCCccc-hhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-Hhhc
Q psy2947         118 NASIP-FTLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQ  194 (441)
Q Consensus       118 ~~~~p-~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~  194 (441)
                        .++ ..+..+++|++|+|++|+|+.+| ..|..+++|+.|+|++|.+..         ..|..+..++.+..+ +++|
T Consensus        78 --~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~---------~~~~~~~~l~~L~~L~L~~N  146 (361)
T 2xot_A           78 --FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV---------VDRNAFEDMAQLQKLYLSQN  146 (361)
T ss_dssp             --EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE---------ECTTTTTTCTTCCEEECCSS
T ss_pred             --ccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccE---------ECHHHhCCcccCCEEECCCC
Confidence              555 56899999999999999999887 568899999999999999643         235667778888878 8999


Q ss_pred             ccccCCchh----hhhhhhcccccccccCCCCCCCch
Q psy2947         195 KKLHQPSRL----QDLAVQSVIASKENFFEPGLFPGP  227 (441)
Q Consensus       195 ~~~~~p~~l----~~l~~l~~l~l~~n~~~~~~~p~~  227 (441)
                      .+..+|..+    ..++.|+.|++++|.+..  +|..
T Consensus       147 ~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~--l~~~  181 (361)
T 2xot_A          147 QISRFPVELIKDGNKLPKLMLLDLSSNKLKK--LPLT  181 (361)
T ss_dssp             CCCSCCGGGTC----CTTCCEEECCSSCCCC--CCHH
T ss_pred             cCCeeCHHHhcCcccCCcCCEEECCCCCCCc--cCHH
Confidence            999999766    579999999999998874  6643

>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal binding protein; NMR {Entamoeba histolytica} SCOP: a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A

Probab=99.53  E-value=9.8e-15  Score=118.18  Aligned_cols=124  Identities=15%  Similarity=0.201  Sum_probs=102.9

Q ss_pred             HHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHH----hCCCcccHHHHHHHHHhhcC--CCCCHHHHHHH
Q psy2947         268 FRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLA----EKGGKLSFPDFLKVMHTHSK--AEDIPKEVVDA  339 (441)
Q Consensus       268 l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~~--~~~~~~~~~~~  339 (441)
                      ++++|..+|.+  |.| +.+|+..+++.++..++..++..++.    +++|.|+++||..++.....  .....++++.+
T Consensus         2 l~~~F~~~D~~~~g~i-~~~e~~~~l~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~   80 (134)
T 1jfj_A            2 AEALFKEIDVNGDGAV-SYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYGSIQGQDLSDDKIGLKVL   80 (134)
T ss_dssp             HHHHHHHHCTTCSSEE-EHHHHHHHHHTTCCSSHHHHHHHHHHHHCSSCCSEEEHHHHHHHTTCSSCCSSHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCcC-CHHHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCeEcHHHHHHHHHHhcccccCCCHHHHHHH
Confidence            57789899976  888 89999999999998888888877775    68999999999999853211  11234669999


Q ss_pred             HHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy2947         340 FKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVL  397 (441)
Q Consensus       340 f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l  397 (441)
                      |+.+|.|++|.|+.+||..++.....     ..+..+|+.+|.+++|.|+++||.+++
T Consensus        81 f~~~D~d~~G~i~~~e~~~~l~~~~~-----~~~~~~~~~~D~~~dg~i~~~ef~~~l  133 (134)
T 1jfj_A           81 YKLMDVDGDGKLTKEEVTSFFKKHGI-----EKVAEQVMKADANGDGYITLEEFLEFS  133 (134)
T ss_dssp             HHHHCCSSSSEEEHHHHHHHHTTTTC-----HHHHHHHHHHHCSSSSEEEHHHHHHHH
T ss_pred             HHHHCCCCCCccCHHHHHHHHHHhCH-----HHHHHHHHHhCCCCCCcEeHHHHHHHh
Confidence            99999999999999999999986521     128899999999999999999999876

>2lvv_A Flagellar calcium-binding protein TB-24; EF-hand, metal binding protein; NMR {Trypanosoma brucei brucei}

Probab=99.53  E-value=1.2e-14  Score=129.30  Aligned_cols=140  Identities=16%  Similarity=0.072  Sum_probs=107.2

Q ss_pred             eecccchHHHHHhhhccccC--CCccCHHHHHH-HHHHcCCCcC----HHHHHHH---------HHhCCCcccHHHHHHH
Q psy2947         259 FTFKTPYLEFRECFFLFARN--GTIKTLDELSV-IMRSLGMSPT----IAELKKY---------LAEKGGKLSFPDFLKV  322 (441)
Q Consensus       259 ~l~~~~~~~l~~~f~~~d~~--G~i~~~~el~~-~~~~~~~~~~----~~~~~~~---------~~~~~g~i~~~ef~~~  322 (441)
                      .++..++..++++|..+|.+  |.| +.+|+.. +++.++..++    ...+..+         +.+++|.|+++||..+
T Consensus        44 ~ls~~~~~~l~~~F~~~D~d~dG~I-s~~El~~~l~~~lg~~~~~~~~~~~~~~~f~~~~~~~~D~d~~G~I~~~EF~~~  122 (226)
T 2lvv_A           44 DKDAESKSRRIELFKQFDTNGTGKL-GFREVLDGCYGILKLDEFTTHLPDIVQRAFDKAKDLGNKVKGVGEEDLVEFLEF  122 (226)
T ss_dssp             SCCHHHHHHHHHHHHHHGGGSCSCB-CSHHHHHHHHHTTCCTTTSSSCHHHHHHHHHHHHHHHHHHSCCCCCSCBCHHHH
T ss_pred             hCCHHHHHHHHHHHHHHCCCCCCcC-cHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcccCCCCCCCCcCCHHHHHHH
Confidence            45677899999999999975  889 8999998 5666565443    3334444         5788999999999995


Q ss_pred             HHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         323 MHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       323 ~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      +..... ....+.+..+|+.||.|++|+|+.+||+.++..+........++..+|+.+|.|++|.|+++||..+|...
T Consensus       123 ~~~~~~-~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~~~~g~~~~e~~~~~~~~D~d~dG~Is~~EF~~~~~~~  199 (226)
T 2lvv_A          123 RLMLCY-IYDIFELTVMFDTMDKDGSLLLELQEFKEALPKLKEWGVDITDATTVFNEIDTNGSGVVTFDEFSCWAVTK  199 (226)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHHSCSSCCEECHHHHHHHHHHHHHHTCCCCSCHHHHHHHCCSCSSCEEHHHHHHHHHHH
T ss_pred             HHHHHh-ccCHHHHHHHHHHHcCCCCCeEcHHHHHHHHHHHhhcCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHhc
Confidence            332111 11246899999999999999999999999998652111112348899999999999999999999999763

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.53  E-value=9.6e-15  Score=131.20  Aligned_cols=156  Identities=16%  Similarity=0.199  Sum_probs=126.0

Q ss_pred             CCCCCcccEEeccCCC-c---Cc-ccCCCCCCCEEEccC-CCCCcCCcC-ccCCCCCcEEEccCCcCCCCCCchhhhcCC
Q psy2947          57 PQYFSHAFLLSLSYTP-I---GR-RIFKCDTVEVLSLKS-NSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPFTLTFCK  129 (441)
Q Consensus        57 ~~~l~~L~~l~l~~n~-i---~~-~~~~l~~L~~L~l~~-n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~  129 (441)
                      +..+++|+.|++++|. +   +. .+..+++|++|++++ |+++.+|+. |..+++|++|++++|.++  .+|. +..++
T Consensus        51 ~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~--~lp~-~~~l~  127 (239)
T 2xwt_C           51 FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK--MFPD-LTKVY  127 (239)
T ss_dssp             TTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCC--SCCC-CTTCC
T ss_pred             ccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCc--cccc-ccccc
Confidence            3458999999999995 5   33 567899999999998 999988865 899999999999999998  6887 88888


Q ss_pred             CCC---EEEccCC-CCCccc-hhhcCCCCCC-EEEccCCcCccCcccccccccccccccccchhHHH-Hhhcc-cccCC-
Q psy2947         130 NLT---HLYLDNN-LLDALP-GFLLSMPQLD-TVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQK-KLHQP-  200 (441)
Q Consensus       130 ~L~---~L~l~~n-~l~~lp-~~~~~l~~L~-~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~-~~~~p-  200 (441)
                      +|+   +|++++| .++.+| ..|..+++|+ .|++++|.+..          +|......+.+..+ +.+|. +..+| 
T Consensus       128 ~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~----------i~~~~~~~~~L~~L~L~~n~~l~~i~~  197 (239)
T 2xwt_C          128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS----------VQGYAFNGTKLDAVYLNKNKYLTVIDK  197 (239)
T ss_dssp             BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE----------ECTTTTTTCEEEEEECTTCTTCCEECT
T ss_pred             ccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc----------cCHhhcCCCCCCEEEcCCCCCcccCCH
Confidence            888   9999999 999998 5688999999 99999999643          33322222445555 77784 77775 


Q ss_pred             chhhhh-hhhcccccccccCCCCCCCch
Q psy2947         201 SRLQDL-AVQSVIASKENFFEPGLFPGP  227 (441)
Q Consensus       201 ~~l~~l-~~l~~l~l~~n~~~~~~~p~~  227 (441)
                      ..+..+ +.|+.+++++|.+..  +|..
T Consensus       198 ~~~~~l~~~L~~L~l~~N~l~~--l~~~  223 (239)
T 2xwt_C          198 DAFGGVYSGPSLLDVSQTSVTA--LPSK  223 (239)
T ss_dssp             TTTTTCSBCCSEEECTTCCCCC--CCCT
T ss_pred             HHhhccccCCcEEECCCCcccc--CChh
Confidence            457888 999999999998764  6654

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.53  E-value=1.8e-14  Score=143.41  Aligned_cols=136  Identities=19%  Similarity=0.310  Sum_probs=109.3

Q ss_pred             cccchHHHHHhhhccccC--CCccCHHHHHH----HHHHcCCCcC-------HHHHHHHHH----hCCCcccHHHHHHHH
Q psy2947         261 FKTPYLEFRECFFLFARN--GTIKTLDELSV----IMRSLGMSPT-------IAELKKYLA----EKGGKLSFPDFLKVM  323 (441)
Q Consensus       261 ~~~~~~~l~~~f~~~d~~--G~i~~~~el~~----~~~~~~~~~~-------~~~~~~~~~----~~~g~i~~~ef~~~~  323 (441)
                      ++++..++++.|..+|.+  |.| +.+|+..    +++.++..++       ..++..++.    +++|.|+++||..++
T Consensus       330 ~~~~~~~l~~~F~~~D~d~dG~I-~~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~D~d~~g~i~~~Ef~~~~  408 (484)
T 3nyv_A          330 SQDETKELTAIFHKMDKNGDGQL-DRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFDKNGYIEYSEFVTVA  408 (484)
T ss_dssp             HHHHHHHHHHHHHHHCTTCSSEE-EHHHHHHHHHHHHC----CGGGCSHHHHHHHHHHHHHHHTCCTTSEEEHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcCCCceE-eHHHHHHHHHHHhhhcccccccccccccHHHHHHHHHHhCCCCCCeEeHHHHHHHH
Confidence            567888999999999986  788 8999944    4444566666       566666664    689999999999988


Q ss_pred             HhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhC
Q psy2947         324 HTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWG  401 (441)
Q Consensus       324 ~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~  401 (441)
                      .... .....+.++.+|+.||.|++|.|+.+||..++..   ....+++++.+|+.+|.|+||.|+++||.++|..+.
T Consensus       409 ~~~~-~~~~~~~~~~~F~~~D~d~dG~I~~~El~~~l~~---~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~~~~~  482 (484)
T 3nyv_A          409 MDRK-TLLSRERLERAFRMFDSDNSGKISSTELATIFGV---SDVDSETWKSVLSEVDKNNDGEVDFDEFQQMLLKLC  482 (484)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHCTTCCSEEEHHHHHHHHHH---TTCCHHHHHHHHHHHCTTCCSEEEHHHHHHHHHHTT
T ss_pred             Hhcc-ccCcHHHHHHHHHHHCCCCCCcCCHHHHHHHHHh---cCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHhhh
Confidence            7552 2234578999999999999999999999999876   344578899999999999999999999999998753

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.53  E-value=2.1e-15  Score=141.59  Aligned_cols=137  Identities=20%  Similarity=0.150  Sum_probs=84.6

Q ss_pred             CCCCCEEEccCCCCCcCCc-CccCCCCCcEEEccCCcCCCCCCchhh-hcCCCCCEEEccCCCCCccchhhcCCCCCCEE
Q psy2947          80 CDTVEVLSLKSNSLTSLPP-DIGRLTNLRVLCLTDNCLQNASIPFTL-TFCKNLTHLYLDNNLLDALPGFLLSMPQLDTV  157 (441)
Q Consensus        80 l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~~~~p~~~-~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L  157 (441)
                      +++|+.|++++|+++.+++ .+..+++|+.|++++|.++ +..|..+ ..+++|++|++++|.|+.+|.. ..+++|+.|
T Consensus       119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L  196 (317)
T 3o53_A          119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTL  196 (317)
T ss_dssp             CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCC-EEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEE
T ss_pred             cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCC-cccHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEE
Confidence            4556666666666665443 3666666666666666665 3333344 3566666666666666666532 236666666


Q ss_pred             EccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCchhhhhhhhcccccccccCCCCCCCchh
Q psy2947         158 YRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSRLQDLAVQSVIASKENFFEPGLFPGPL  228 (441)
Q Consensus       158 ~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~l~~l~~l~~l~l~~n~~~~~~~p~~~  228 (441)
                      ++++|.+.          .+|..+..++.+..+ +++|.+..+|..+..++.|+.+++++|++.++.+|..+
T Consensus       197 ~Ls~N~l~----------~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~  258 (317)
T 3o53_A          197 DLSSNKLA----------FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFF  258 (317)
T ss_dssp             ECCSSCCC----------EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHH
T ss_pred             ECCCCcCC----------cchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHH
Confidence            66666642          234446666666666 77777777777777777888888888877644444443

>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}

Probab=99.53  E-value=1.1e-13  Score=125.71  Aligned_cols=138  Identities=15%  Similarity=0.185  Sum_probs=111.8

Q ss_pred             ecccchHHHHHhhhccccCCCccCHHHHHHHHHHcC-CCcCHHHHHHHHH----hCCCcccHHHHHHHHHhhcCCCCCHH
Q psy2947         260 TFKTPYLEFRECFFLFARNGTIKTLDELSVIMRSLG-MSPTIAELKKYLA----EKGGKLSFPDFLKVMHTHSKAEDIPK  334 (441)
Q Consensus       260 l~~~~~~~l~~~f~~~d~~G~i~~~~el~~~~~~~~-~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~~~~~~~~  334 (441)
                      ++..++..+.+.|...+.+|.| +.+++..++..++ ......++..++.    +++|.|+++||..++..... ....+
T Consensus        88 ~s~~ei~~l~~~fd~~~~~G~I-~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~~~~-~~~~~  165 (256)
T 2jul_A           88 FTKKELQSLYRGFKNECPTGLV-DEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFVVGLSILLR-GTVHE  165 (256)
T ss_dssp             SCHHHHHHHHHHHHHHCTTSSE-EHHHHHHHHHHHCCSSCCHHHHHHHHHHSSCSCCSEECSHHHHHHHHHHHS-CCHHH
T ss_pred             CCHHHHHHHHHHHHhhCCCCcC-CHHHHHHHHHHHcccCCcHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHhc-cChHH
Confidence            3456666666666554567999 8999999999886 3456666777665    68999999999999987643 35678


Q ss_pred             HHHHHHHhhcCCCCCcccHHHHHHHHHhhc---c--------CCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         335 EVVDAFKAADTTKSGKLSFPDFLKVMHTHS---K--------AEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       335 ~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~---~--------~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      .++.+|+.+|.|++|.|+++||..++....   +        .....+.+..+|+.+|.|++|.|+++||+.++..
T Consensus       166 ~l~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~Is~~Ef~~~~~~  241 (256)
T 2jul_A          166 KLKWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQDGVVTIDEFLETCQK  241 (256)
T ss_dssp             HHHHHHHHTCCSSSSCBCHHHHHHHHHHHHHHCCCCCSCCSCCCCHHHHHHHHHHHSCCSTTCSBCHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHhCCCCCcccchhhHHHHHHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence            899999999999999999999999987652   1        2234678999999999999999999999999986

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.52  E-value=2.4e-14  Score=143.79  Aligned_cols=152  Identities=20%  Similarity=0.136  Sum_probs=118.8

Q ss_pred             cccEEeccCCCcCccc--CCCCCCCEEEccCCCCCc-CCcCccCCCCCcEEEccCCcCCCC--CCchhhhcCCCCCEEEc
Q psy2947          62 HAFLLSLSYTPIGRRI--FKCDTVEVLSLKSNSLTS-LPPDIGRLTNLRVLCLTDNCLQNA--SIPFTLTFCKNLTHLYL  136 (441)
Q Consensus        62 ~L~~l~l~~n~i~~~~--~~l~~L~~L~l~~n~l~~-lp~~~~~l~~L~~L~l~~n~l~~~--~~p~~~~~l~~L~~L~l  136 (441)
                      +|+.|++++|.+....  ..+++|++|++++|+++. +|..+..+++|+.|++++|+++ +  .+|..+..+++|++|++
T Consensus       303 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~l~~L~~L~L  381 (520)
T 2z7x_B          303 NIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDI  381 (520)
T ss_dssp             CCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCC-BHHHHHHHHTTCTTCCEEEC
T ss_pred             ceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccC-ccccchHHHhhCCCCCEEEC
Confidence            3566666666554333  578899999999999994 7888999999999999999997 3  34567889999999999


Q ss_pred             cCCCCCc-cch-hhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCchhhhhhhhcccc
Q psy2947         137 DNNLLDA-LPG-FLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSRLQDLAVQSVIA  213 (441)
Q Consensus       137 ~~n~l~~-lp~-~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~l~~l~~l~~l~  213 (441)
                      ++|.++. +|. .+..+++|+.|++++|++.         +.+|..+.  +.+..+ +++|.+..+|..+..++.|+.++
T Consensus       382 s~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~---------~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~  450 (520)
T 2z7x_B          382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILT---------DTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELN  450 (520)
T ss_dssp             CSSCCBCCGGGCSCCCCTTCCEEECCSSCCC---------GGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEE
T ss_pred             CCCcCCcccccchhccCccCCEEECcCCCCC---------cchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEE
Confidence            9999977 885 4778899999999999853         22333332  334444 77888899999899999999999


Q ss_pred             cccccCCCCCCCch
Q psy2947         214 SKENFFEPGLFPGP  227 (441)
Q Consensus       214 l~~n~~~~~~~p~~  227 (441)
                      +++|.+..  +|..
T Consensus       451 L~~N~l~~--l~~~  462 (520)
T 2z7x_B          451 VASNQLKS--VPDG  462 (520)
T ss_dssp             CCSSCCCC--CCTT
T ss_pred             CCCCcCCc--cCHH
Confidence            99998774  7765

>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium binding protein; NMR {Gallus gallus} PDB: 2kyf_A

Probab=99.52  E-value=2.1e-15  Score=117.62  Aligned_cols=100  Identities=17%  Similarity=0.299  Sum_probs=87.8

Q ss_pred             CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh---CCCCCH
Q psy2947         330 EDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW---GEGLSS  406 (441)
Q Consensus       330 ~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~---~~~l~~  406 (441)
                      ..+.+++..+|+.+|  ++|.|+++||..++...   ....+.++.+|+.+|.+++|+|+.+||+.++..+   |..+++
T Consensus         5 ~~~~~e~~~l~~~~d--~~g~i~~~eF~~~~~~~---~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~   79 (108)
T 2kyc_A            5 ILSPSDIAAALRDCQ--APDSFSPKKFFQISGMS---KKSSSQLKEIFRILDNDQSGFIEEDELKYFLQRFESGARVLTA   79 (108)
T ss_dssp             SSCHHHHHHHHTTSC--STTTCCHHHHHHHHTCT---TCCSSSHHHHCSSSCSCCSSCCCGGGTTTSHHHHSSSCCCCCT
T ss_pred             cCCHHHHHHHHHHcC--CCCcCCHHHHHHHHhhC---cccHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHHhhccCCCCH
Confidence            356778888888888  88999999999988532   2334678899999999999999999999999998   788999


Q ss_pred             HHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         407 KEVDQIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       407 ~~~~~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      ++++.+++.+|.|++|.|+|+||+.++.
T Consensus        80 ~~~~~~~~~~D~d~dg~i~~~eF~~~~~  107 (108)
T 2kyc_A           80 SETKTFLAAADHDGDGKIGAEEFQEMVQ  107 (108)
T ss_dssp             TTTHHHHTTTCCSSSSCCCSSHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCcCCHHHHHHHHh
Confidence            9999999999999999999999999875

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.52  E-value=3.5e-15  Score=148.32  Aligned_cols=137  Identities=20%  Similarity=0.147  Sum_probs=97.8

Q ss_pred             CCCCCEEEccCCCCCcC-CcCccCCCCCcEEEccCCcCCCCCCchhhh-cCCCCCEEEccCCCCCccchhhcCCCCCCEE
Q psy2947          80 CDTVEVLSLKSNSLTSL-PPDIGRLTNLRVLCLTDNCLQNASIPFTLT-FCKNLTHLYLDNNLLDALPGFLLSMPQLDTV  157 (441)
Q Consensus        80 l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~~~~p~~~~-~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L  157 (441)
                      +++|+.|+|++|.++.+ |..++.+++|+.|++++|.++ +..|..+. .+++|++|+|++|.|+.+|.. ..+++|+.|
T Consensus       119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~-~~l~~L~~L  196 (487)
T 3oja_A          119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTL  196 (487)
T ss_dssp             CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCC-EEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEE
T ss_pred             cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCC-CcChHHHhhhCCcccEEecCCCcccccccc-ccCCCCCEE
Confidence            45677777777777754 334777777777777777776 45555554 677777777777777766542 346777777


Q ss_pred             EccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCchhhhhhhhcccccccccCCCCCCCchh
Q psy2947         158 YRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSRLQDLAVQSVIASKENFFEPGLFPGPL  228 (441)
Q Consensus       158 ~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~l~~l~~l~~l~l~~n~~~~~~~p~~~  228 (441)
                      +|++|.+.          .+|..+..++.+..+ +++|.+..+|..+..++.|..+++++|++.++.+|..+
T Consensus       197 ~Ls~N~l~----------~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~  258 (487)
T 3oja_A          197 DLSSNKLA----------FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFF  258 (487)
T ss_dssp             ECCSSCCC----------EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred             ECCCCCCC----------CCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence            77777752          345557777777777 88888888898888889999999999988865555544

>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic, ER, golgi, transport, disulfide bond, endopla reticulum, ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A 3lcp_C

Probab=99.52  E-value=6.6e-15  Score=120.89  Aligned_cols=98  Identities=12%  Similarity=0.110  Sum_probs=53.0

Q ss_pred             HHHHHHhhcCCCCCcccHHHHHHHHHhhcc----CCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhC--------CC
Q psy2947         336 VVDAFKAADTTKSGKLSFPDFLKVMHTHSK----AEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWG--------EG  403 (441)
Q Consensus       336 ~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~----~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~--------~~  403 (441)
                      ...+|+.+|.|++|.|+++||..++.....    .....+.++.+|+.+|.|++|+|+.+||+.++..++        ..
T Consensus        29 ~~~~f~~~D~d~dG~I~~~Ef~~~l~~~~~~~~~~~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~g~~  108 (143)
T 3a4u_B           29 SFSQPGSMGLDKNTVHDQEHIMEHLEGVINKPEAEMSPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPL  108 (143)
T ss_dssp             ----------------------------------CCCHHHHHHHHHHHTCTTCSSCEEHHHHHHTCC-------------
T ss_pred             CHHHHHHhCCCCCCcCcHHHHHHHHHHHhcccccccCHHHHHHHHHHHhCCCCCCccCHHHHHHHHHHHHhhhccccCCC
Confidence            456788999999999999999988765532    112356788999999999999999999999998763        56


Q ss_pred             CCHHHHHHHH----HHhCCCCCCceeHHHHHHHH
Q psy2947         404 LSSKEVDQIF----REANVTMNSKVRYEDFVKIA  433 (441)
Q Consensus       404 l~~~~~~~l~----~~~d~d~dg~i~~~ef~~~l  433 (441)
                      +++++++.++    +.+|.|+||.|+|+||+.+|
T Consensus       109 ~s~~e~~~~~~~~f~~~D~d~dG~Is~~EF~~~~  142 (143)
T 3a4u_B          109 MSEDELINIIDGVLRDDDKNNDGYIDYAEFAKSL  142 (143)
T ss_dssp             CCHHHHHHHHHHHHHHHCTTCSSEECHHHHHC--
T ss_pred             CCHHHHHHHHHHHHHHcCCCCCCcEeHHHHHHHH
Confidence            8888886555    99999999999999999775

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.52  E-value=5.2e-14  Score=144.02  Aligned_cols=165  Identities=18%  Similarity=0.112  Sum_probs=98.5

Q ss_pred             CCcccEEeccCCCc----C-cccCCCCCCCEEEccCCCCCcC-CcCccCCCCCcEEEccCCcCCCC-CC--chhhhcCCC
Q psy2947          60 FSHAFLLSLSYTPI----G-RRIFKCDTVEVLSLKSNSLTSL-PPDIGRLTNLRVLCLTDNCLQNA-SI--PFTLTFCKN  130 (441)
Q Consensus        60 l~~L~~l~l~~n~i----~-~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~~-~~--p~~~~~l~~  130 (441)
                      +++|+.|++++|.+    | ..+..+++|+.|++++|.++.+ |..+..+++|++|++++|.++ + .+  +..+..+++
T Consensus       399 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~~~l~~  477 (606)
T 3t6q_A          399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP-KGNIQKTNSLQTLGR  477 (606)
T ss_dssp             CTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCG-GGEECSSCGGGGCTT
T ss_pred             CccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCC-ccccccchhhccCCC
Confidence            44455555555522    1 1244455555555555555533 333555666666666666554 2 11  234556666


Q ss_pred             CCEEEccCCCCCcc-chhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCc-hhhhhh
Q psy2947         131 LTHLYLDNNLLDAL-PGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPS-RLQDLA  207 (441)
Q Consensus       131 L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~-~l~~l~  207 (441)
                      |++|++++|+++.+ |..+..+++|+.|++++|++         .+..|..+..++.+ .+ +.+|.+..+|+ .+..++
T Consensus       478 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l---------~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~  547 (606)
T 3t6q_A          478 LEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL---------TSSSIEALSHLKGI-YLNLASNHISIILPSLLPILS  547 (606)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC---------CGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHH
T ss_pred             ccEEECCCCccCccChhhhccccCCCEEECCCCcc---------CcCChhHhCccccc-EEECcCCcccccCHhhcccCC
Confidence            66666666666554 35566666666666666663         33456677777777 55 78888876654 578888


Q ss_pred             hhcccccccccCCCCCCCchhhhHHHhh
Q psy2947         208 VQSVIASKENFFEPGLFPGPLVDYIARE  235 (441)
Q Consensus       208 ~l~~l~l~~n~~~~~~~p~~~~~~l~~~  235 (441)
                      .|+.+++++|++.+.+--.++..|+...
T Consensus       548 ~L~~L~l~~N~~~c~c~~~~~~~w~~~~  575 (606)
T 3t6q_A          548 QQRTINLRQNPLDCTCSNIYFLEWYKEN  575 (606)
T ss_dssp             TSSEEECTTCCEECSGGGHHHHHHHHHC
T ss_pred             CCCEEeCCCCCccccCCcHHHHHHHHhC
Confidence            9999999999888754444556666543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.52  E-value=3.8e-14  Score=143.85  Aligned_cols=147  Identities=21%  Similarity=0.244  Sum_probs=123.6

Q ss_pred             CCCCcccEEeccCCCcC--cccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEE
Q psy2947          58 QYFSHAFLLSLSYTPIG--RRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLY  135 (441)
Q Consensus        58 ~~l~~L~~l~l~~n~i~--~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~  135 (441)
                      ..+++|+.|+|++|.|.  ..+..+++|+.|+|++|.++.+| .+..+++|+.|+|++|.+.  .+| .+..+++|+.|+
T Consensus        62 ~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~--~l~-~l~~l~~L~~L~  137 (605)
T 1m9s_A           62 QYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGIS--DIN-GLVHLPQLESLY  137 (605)
T ss_dssp             GGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCC--CCG-GGGGCTTCSEEE
T ss_pred             ccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCC--CCc-cccCCCccCEEE
Confidence            45889999999999543  12778999999999999999876 6899999999999999998  554 588999999999


Q ss_pred             ccCCCCCccchhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCchhhhhhhhccccc
Q psy2947         136 LDNNLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSRLQDLAVQSVIAS  214 (441)
Q Consensus       136 l~~n~l~~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~l~~l~~l~~l~l  214 (441)
                      |++|.|+.+ ..+..+++|+.|+|++|.+...         .|  +..++.+..+ +++|.+..+| .+..+++|+.|++
T Consensus       138 Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~---------~~--l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L  204 (605)
T 1m9s_A          138 LGNNKITDI-TVLSRLTKLDTLSLEDNQISDI---------VP--LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLEL  204 (605)
T ss_dssp             CCSSCCCCC-GGGGSCTTCSEEECCSSCCCCC---------GG--GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEEC
T ss_pred             CCCCccCCc-hhhcccCCCCEEECcCCcCCCc---------hh--hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEc
Confidence            999999888 5688999999999999996332         22  6667777777 8888888886 6899999999999


Q ss_pred             ccccCCC
Q psy2947         215 KENFFEP  221 (441)
Q Consensus       215 ~~n~~~~  221 (441)
                      ++|++..
T Consensus       205 ~~N~l~~  211 (605)
T 1m9s_A          205 FSQECLN  211 (605)
T ss_dssp             CSEEEEC
T ss_pred             cCCcCcC
Confidence            9998765

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.52  E-value=3.4e-14  Score=147.41  Aligned_cols=105  Identities=25%  Similarity=0.234  Sum_probs=52.6

Q ss_pred             CCCcccEEeccCCCc----CcccCCCCCCCEEEccCCCCC---cCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCC
Q psy2947          59 YFSHAFLLSLSYTPI----GRRIFKCDTVEVLSLKSNSLT---SLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNL  131 (441)
Q Consensus        59 ~l~~L~~l~l~~n~i----~~~~~~l~~L~~L~l~~n~l~---~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L  131 (441)
                      .+++|+.|++++|.+    +..+..+++|+.|++++|.++   .+|..|..+++|+.|++++|.++ +..|..+.++++|
T Consensus       428 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L  506 (680)
T 1ziw_A          428 GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA-NINDDMLEGLEKL  506 (680)
T ss_dssp             TCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred             CcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCC-cCChhhhcccccc
Confidence            456677777777632    233444555555555555543   33444555555555555555554 2222234555555


Q ss_pred             CEEEccCCCCCccc---------hhhcCCCCCCEEEccCCcC
Q psy2947         132 THLYLDNNLLDALP---------GFLLSMPQLDTVYRHGNHN  164 (441)
Q Consensus       132 ~~L~l~~n~l~~lp---------~~~~~l~~L~~L~l~~N~~  164 (441)
                      ++|++++|+++.++         ..+.++++|+.|++++|.+
T Consensus       507 ~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l  548 (680)
T 1ziw_A          507 EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF  548 (680)
T ss_dssp             CEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCC
T ss_pred             CEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCC
Confidence            55555555554332         1134445555555555543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.51  E-value=8.8e-14  Score=134.37  Aligned_cols=173  Identities=18%  Similarity=0.160  Sum_probs=104.9

Q ss_pred             CCCcccEEeccCCCc----CcccCCCCCCCEEEccCCCCCcCCcC-ccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCE
Q psy2947          59 YFSHAFLLSLSYTPI----GRRIFKCDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTH  133 (441)
Q Consensus        59 ~l~~L~~l~l~~n~i----~~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~  133 (441)
                      .+++|+.|++++|.+    |..+..+++|++|+|++|.++.+|.. |..+++|++|++++|.++ +..|..+..+++|++
T Consensus        91 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~  169 (390)
T 3o6n_A           91 YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQN  169 (390)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTSSCTTCCE
T ss_pred             CCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccC-ccChhhccCCCCCCE
Confidence            456666666666632    23345566666666666666666655 456666666666666665 233334555666666


Q ss_pred             EEccCCCCCccc------------------------------------------------------------hhhcCCCC
Q psy2947         134 LYLDNNLLDALP------------------------------------------------------------GFLLSMPQ  153 (441)
Q Consensus       134 L~l~~n~l~~lp------------------------------------------------------------~~~~~l~~  153 (441)
                      |++++|+++.++                                                            ..+..+++
T Consensus       170 L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~  249 (390)
T 3o6n_A          170 LQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPG  249 (390)
T ss_dssp             EECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTT
T ss_pred             EECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCC
Confidence            666666554332                                                            12344566


Q ss_pred             CCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCchhhhhhhhcccccccccCCCCCCCchhhhHH
Q psy2947         154 LDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSRLQDLAVQSVIASKENFFEPGLFPGPLVDYI  232 (441)
Q Consensus       154 L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~l~~l~~l~~l~l~~n~~~~~~~p~~~~~~l  232 (441)
                      |+.|++++|.+         ....|..+..++.+..+ +.+|.+..+|..+..++.|+.|++++|.+..  +|..+....
T Consensus       250 L~~L~Ls~n~l---------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~l~  318 (390)
T 3o6n_A          250 LVEVDLSYNEL---------EKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH--VERNQPQFD  318 (390)
T ss_dssp             CSEEECCSSCC---------CEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCC--CGGGHHHHT
T ss_pred             ccEEECCCCcC---------CCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCccee--cCccccccC
Confidence            77777777764         23345667777777777 7778887777777778888888888887653  666655544


Q ss_pred             HhhhcCCcccc
Q psy2947         233 AREYNQYHVCH  243 (441)
Q Consensus       233 ~~~~~~~~~~~  243 (441)
                      ......+..+.
T Consensus       319 ~L~~L~L~~N~  329 (390)
T 3o6n_A          319 RLENLYLDHNS  329 (390)
T ss_dssp             TCSEEECCSSC
T ss_pred             cCCEEECCCCc
Confidence            44444444443

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.51  E-value=1.1e-14  Score=147.23  Aligned_cols=123  Identities=12%  Similarity=0.165  Sum_probs=68.2

Q ss_pred             HhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCc
Q psy2947         308 AEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGT  387 (441)
Q Consensus       308 ~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~  387 (441)
                      .+++|.|+++||..++.... ...+.++++.+|+.+|.|++|.|+++||..++..+..    +++++.+|+.||.+ +|+
T Consensus        22 ~d~dG~Is~~El~~~l~~lg-~~~s~~el~~lf~~~D~d~~G~I~f~EF~~~~~~l~~----~~el~~aF~~fD~~-~G~   95 (624)
T 1djx_A           22 KNKDNKMNFKELKDFLKELN-IQVDDGYARKIFRECDHSQTDSLEDEEIETFYKMLTQ----RAEIDRAFEEAAGS-AET   95 (624)
T ss_dssp             -----------------------------------------------CTTHHHHHHTC----CHHHHHHHHHHHTT-SSS
T ss_pred             CCCCCcCcHHHHHHHHHHcC-CCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHhcc----HHHHHHHHHHhcCC-CCe
Confidence            56667777777777666442 2345677889999999999999999999999987632    46899999999985 999


Q ss_pred             ccHHHHHHHHHHh-CCC-CCHHHHHHHHHHhCCC----CCCceeHHHHHHHHhcc
Q psy2947         388 VPAKYLKHVLVNW-GEG-LSSKEVDQIFREANVT----MNSKVRYEDFVKIACAP  436 (441)
Q Consensus       388 is~~ef~~~l~~~-~~~-l~~~~~~~l~~~~d~d----~dg~i~~~ef~~~l~~~  436 (441)
                      |+.+||+++|... |.. +++++++++++.+|.|    ++|.|+|+||+++|...
T Consensus        96 Is~~EL~~fL~~~qge~~ls~ee~~~ii~~~d~d~~~~~dG~Is~deF~~~L~s~  150 (624)
T 1djx_A           96 LSVERLVTFLQHQQREEEAGPALALSLIERYEPSETAKAQRQMTKDGFLMYLLSA  150 (624)
T ss_dssp             EEHHHHHHHHHHTSCCSSCSHHHHHHHHHHHCCCHHHHHTTEECHHHHHHHHHST
T ss_pred             ecHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCChhhccCCCCCHHHHHHHhcCc
Confidence            9999999999975 666 8999999999999988    79999999999999754

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.51  E-value=2.1e-14  Score=145.77  Aligned_cols=166  Identities=20%  Similarity=0.214  Sum_probs=133.5

Q ss_pred             CCCcccEEeccCCCcC--cccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEc
Q psy2947          59 YFSHAFLLSLSYTPIG--RRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL  136 (441)
Q Consensus        59 ~l~~L~~l~l~~n~i~--~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l  136 (441)
                      .+.+|+.|++++|.|.  +.+..+++|+.|+|++|+++.+|+ +..+++|+.|+|++|.+.  .+| .+..+++|++|+|
T Consensus        41 ~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~--~l~-~l~~l~~L~~L~L  116 (605)
T 1m9s_A           41 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIK--DLS-SLKDLKKLKSLSL  116 (605)
T ss_dssp             HHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCC--CCT-TSTTCTTCCEEEC
T ss_pred             cCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCC--CCh-hhccCCCCCEEEe
Confidence            4788999999999543  357889999999999999998877 999999999999999998  566 6899999999999


Q ss_pred             cCCCCCccchhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCchhhhhhhhcccccc
Q psy2947         137 DNNLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSRLQDLAVQSVIASK  215 (441)
Q Consensus       137 ~~n~l~~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~l~~l~~l~~l~l~  215 (441)
                      ++|+|..+| .+..+++|+.|+|++|.+...           ..+..++.+..+ +++|.+..+++ +..++.|+.|+++
T Consensus       117 s~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-----------~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls  183 (605)
T 1m9s_A          117 EHNGISDIN-GLVHLPQLESLYLGNNKITDI-----------TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLS  183 (605)
T ss_dssp             TTSCCCCCG-GGGGCTTCSEEECCSSCCCCC-----------GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred             cCCCCCCCc-cccCCCccCEEECCCCccCCc-----------hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECc
Confidence            999999886 478899999999999996432           345666777777 88899988876 9999999999999


Q ss_pred             cccCCCCCCCchhhhHHHhhhcCCccccc
Q psy2947         216 ENFFEPGLFPGPLVDYIAREYNQYHVCHY  244 (441)
Q Consensus       216 ~n~~~~~~~p~~~~~~l~~~~~~~~~~~~  244 (441)
                      +|.+..  +| .+.....+....+..|++
T Consensus       184 ~N~i~~--l~-~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          184 KNHISD--LR-ALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             SSCCCB--CG-GGTTCTTCSEEECCSEEE
T ss_pred             CCCCCC--Ch-HHccCCCCCEEEccCCcC
Confidence            998764  43 333323333344444443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.51  E-value=4.1e-14  Score=143.50  Aligned_cols=152  Identities=16%  Similarity=0.165  Sum_probs=105.5

Q ss_pred             CCCCcccEEeccCCC----cCcccCCCCCCCEEEccCCCCCcCC---cCccCCCCCcEEEccCCcCCCCCCchh-hhcCC
Q psy2947          58 QYFSHAFLLSLSYTP----IGRRIFKCDTVEVLSLKSNSLTSLP---PDIGRLTNLRVLCLTDNCLQNASIPFT-LTFCK  129 (441)
Q Consensus        58 ~~l~~L~~l~l~~n~----i~~~~~~l~~L~~L~l~~n~l~~lp---~~~~~l~~L~~L~l~~n~l~~~~~p~~-~~~l~  129 (441)
                      ..+++|+.|++++|.    +|..+..+++|++|+|++|+++.+|   ..+..+++|+.|++++|.++ +.+|.. +..++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~l~  428 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN-SHAYDRTCAWAE  428 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCB-SCCSSCCCCCCT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCC-CccChhhhcCcc
Confidence            446677777777773    3455666777777777777777544   34677777777777777776 336654 56667


Q ss_pred             CCCEEEccCCCCC-ccchhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCch-hhhh
Q psy2947         130 NLTHLYLDNNLLD-ALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSR-LQDL  206 (441)
Q Consensus       130 ~L~~L~l~~n~l~-~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~-l~~l  206 (441)
                      +|++|++++|+++ .+|..+.  ++|+.|++++|++.          .+|..+..++.+..+ +++|.+..+|.. +..+
T Consensus       429 ~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~----------~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l  496 (562)
T 3a79_B          429 SILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM----------SIPKDVTHLQALQELNVASNQLKSVPDGVFDRL  496 (562)
T ss_dssp             TCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC----------CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTC
T ss_pred             cCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc----------ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcC
Confidence            7777777777773 3443332  56777777777752          456666677777777 888888888876 8888


Q ss_pred             hhhcccccccccCCCC
Q psy2947         207 AVQSVIASKENFFEPG  222 (441)
Q Consensus       207 ~~l~~l~l~~n~~~~~  222 (441)
                      +.|+.+++++|++.+.
T Consensus       497 ~~L~~L~l~~N~~~c~  512 (562)
T 3a79_B          497 TSLQYIWLHDNPWDCT  512 (562)
T ss_dssp             TTCCCEECCSCCBCCC
T ss_pred             CCCCEEEecCCCcCCC
Confidence            8999999999988764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.51  E-value=4.3e-14  Score=142.88  Aligned_cols=164  Identities=16%  Similarity=0.188  Sum_probs=106.1

Q ss_pred             CCCcccEEeccCCCcCc-------ccCCCCCCCEEEccCCCCCcCCc---CccCCCCCcEEEccCCcCCCCCCchhhhcC
Q psy2947          59 YFSHAFLLSLSYTPIGR-------RIFKCDTVEVLSLKSNSLTSLPP---DIGRLTNLRVLCLTDNCLQNASIPFTLTFC  128 (441)
Q Consensus        59 ~l~~L~~l~l~~n~i~~-------~~~~l~~L~~L~l~~n~l~~lp~---~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l  128 (441)
                      .+++|+.|++++|.+..       .+..+++|++|+|++|+++.+|.   .+..+++|++|++++|+++  .+|..+..+
T Consensus       332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~~  409 (549)
T 2z81_A          332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH--PMPDSCQWP  409 (549)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC--CCCSCCCCC
T ss_pred             cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc--cCChhhccc
Confidence            36777777887775532       24567777777777777776653   3677777777777777776  677777777


Q ss_pred             CCCCEEEccCCCCCccchhh------------------cCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH
Q psy2947         129 KNLTHLYLDNNLLDALPGFL------------------LSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV  190 (441)
Q Consensus       129 ~~L~~L~l~~n~l~~lp~~~------------------~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~  190 (441)
                      ++|++|++++|+++.+|..+                  ..+++|+.|++++|++.          .+|. ...++.+..+
T Consensus       410 ~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~----------~ip~-~~~l~~L~~L  478 (549)
T 2z81_A          410 EKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK----------TLPD-ASLFPVLLVM  478 (549)
T ss_dssp             TTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS----------SCCC-GGGCTTCCEE
T ss_pred             ccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC----------cCCC-cccCccCCEE
Confidence            77777777777776665432                  24555666666666543          2333 2344555555


Q ss_pred             -HhhcccccCCc-hhhhhhhhcccccccccCCCCCCC--chhhhHHHhhh
Q psy2947         191 -LRKQKKLHQPS-RLQDLAVQSVIASKENFFEPGLFP--GPLVDYIAREY  236 (441)
Q Consensus       191 -l~~~~~~~~p~-~l~~l~~l~~l~l~~n~~~~~~~p--~~~~~~l~~~~  236 (441)
                       +++|.+..+|+ .+..++.|+.+++++|++.+. .|  ..+.+|+....
T Consensus       479 ~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-~~~~~~l~~~l~~~~  527 (549)
T 2z81_A          479 KISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS-CPRIDYLSRWLNKNS  527 (549)
T ss_dssp             ECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCC-HHHHHHHHHHHHHCT
T ss_pred             ecCCCccCCcCHHHHhcCcccCEEEecCCCccCC-CccHHHHHHHHHhcc
Confidence             77787766654 478888888888888888753 33  23344554443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.51  E-value=7.3e-15  Score=137.50  Aligned_cols=151  Identities=17%  Similarity=0.114  Sum_probs=114.5

Q ss_pred             cccEEeccCCC-----cCcccC-------CCCCCCEEEccCCCCC-cCCcCc--cCCCCCcEEEccCCcCCCCCCchhhh
Q psy2947          62 HAFLLSLSYTP-----IGRRIF-------KCDTVEVLSLKSNSLT-SLPPDI--GRLTNLRVLCLTDNCLQNASIPFTLT  126 (441)
Q Consensus        62 ~L~~l~l~~n~-----i~~~~~-------~l~~L~~L~l~~n~l~-~lp~~~--~~l~~L~~L~l~~n~l~~~~~p~~~~  126 (441)
                      .|+.|++++|.     +|..+.       .+++|++|+|++|.++ .+|..+  ..+++|++|++++|+++  .+|..+.
T Consensus        64 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~  141 (312)
T 1wwl_A           64 IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA--TRDAWLA  141 (312)
T ss_dssp             HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCS--SSSSHHH
T ss_pred             HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCc--chhHHHH
Confidence            47888888884     444444       6889999999999998 788875  88999999999999998  4587777


Q ss_pred             cC-----CCCCEEEccCCCCCccc-hhhcCCCCCCEEEccCCcCccCcccccccccccccc--cccchhHHH-Hhhcccc
Q psy2947         127 FC-----KNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARI--RSTSTRDEV-LRKQKKL  197 (441)
Q Consensus       127 ~l-----~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l--~~l~~~~~~-l~~~~~~  197 (441)
                      .+     ++|++|++++|+++.++ ..++.+++|++|++++|++....       .+|..+  ..++.+..+ +++|.+.
T Consensus       142 ~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------~~~~~~~~~~l~~L~~L~L~~N~l~  214 (312)
T 1wwl_A          142 ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER-------GLISALCPLKFPTLQVLALRNAGME  214 (312)
T ss_dssp             HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHH-------HHHHHSCTTSCTTCCEEECTTSCCC
T ss_pred             HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcch-------HHHHHHHhccCCCCCEEECCCCcCc
Confidence            77     89999999999998877 78889999999999999842210       123233  556666666 7788877


Q ss_pred             cCCc---h-hhhhhhhcccccccccCCC
Q psy2947         198 HQPS---R-LQDLAVQSVIASKENFFEP  221 (441)
Q Consensus       198 ~~p~---~-l~~l~~l~~l~l~~n~~~~  221 (441)
                      .+|.   . +..++.|+.|++++|.+..
T Consensus       215 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  242 (312)
T 1wwl_A          215 TPSGVCSALAAARVQLQGLDLSHNSLRD  242 (312)
T ss_dssp             CHHHHHHHHHHTTCCCSEEECTTSCCCS
T ss_pred             chHHHHHHHHhcCCCCCEEECCCCcCCc
Confidence            4442   2 2456899999999998764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.51  E-value=1.8e-13  Score=120.01  Aligned_cols=108  Identities=27%  Similarity=0.320  Sum_probs=93.4

Q ss_pred             CCCCCcccEEeccCCCc---Cc-ccCCCCCCCEEEccCCCCCcCCcC-ccCCCCCcEEEccCCcCCCCCCch-hhhcCCC
Q psy2947          57 PQYFSHAFLLSLSYTPI---GR-RIFKCDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPF-TLTFCKN  130 (441)
Q Consensus        57 ~~~l~~L~~l~l~~n~i---~~-~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~p~-~~~~l~~  130 (441)
                      ...+++|+.|++++|.+   |. .+..+++|++|+|++|+++.+|.. |..+++|++|++++|.++  .+|. .+..+++
T Consensus        48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~  125 (208)
T 2o6s_A           48 FDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ--SLPDGVFDKLTQ  125 (208)
T ss_dssp             TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTT
T ss_pred             hcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCc--ccCHhHhccCCc
Confidence            34588999999999954   43 356789999999999999988876 789999999999999998  5555 4789999


Q ss_pred             CCEEEccCCCCCccch-hhcCCCCCCEEEccCCcCcc
Q psy2947         131 LTHLYLDNNLLDALPG-FLLSMPQLDTVYRHGNHNYF  166 (441)
Q Consensus       131 L~~L~l~~n~l~~lp~-~~~~l~~L~~L~l~~N~~~~  166 (441)
                      |++|++++|+++.+|. .+..+++|+.|++++|++.+
T Consensus       126 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  162 (208)
T 2o6s_A          126 LKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC  162 (208)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred             CCEEECCCCccceeCHHHhccCCCccEEEecCCCeec
Confidence            9999999999998884 57889999999999998644

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.51  E-value=5.6e-14  Score=142.64  Aligned_cols=151  Identities=17%  Similarity=0.135  Sum_probs=111.3

Q ss_pred             CcccEEeccCCCcC----cccCCCCCCCEEEccCCCCCcCCcC-ccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEE
Q psy2947          61 SHAFLLSLSYTPIG----RRIFKCDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLY  135 (441)
Q Consensus        61 ~~L~~l~l~~n~i~----~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~  135 (441)
                      .+++.|++++|.+.    ..+..+++|++|+|++|+++.+++. |..+++|++|++++|.++ +..|..+.++++|++|+
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~  106 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLV  106 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEE
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhhcCcccccccc
Confidence            47888888888542    4577788888888888888877554 888888888888888887 33345778888888888


Q ss_pred             ccCCCCCccch-hhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCC-chhhhhhhh---
Q psy2947         136 LDNNLLDALPG-FLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQP-SRLQDLAVQ---  209 (441)
Q Consensus       136 l~~n~l~~lp~-~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p-~~l~~l~~l---  209 (441)
                      +++|+++.+|. .++.+++|++|++++|.+..        ..+|..+..++.+..+ +.+|.+..++ ..+..+..|   
T Consensus       107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~--------~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~  178 (570)
T 2z63_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQS--------FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL  178 (570)
T ss_dssp             CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCC--------CCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTC
T ss_pred             ccccccccCCCccccccccccEEecCCCccce--------ecChhhhcccCCCCEEeCcCCccceecHHHccchhccchh
Confidence            88888888774 67888888888888888532        1356667777777766 7777765553 456666666   


Q ss_pred             -cccccccccCC
Q psy2947         210 -SVIASKENFFE  220 (441)
Q Consensus       210 -~~l~l~~n~~~  220 (441)
                       ..++++.|.+.
T Consensus       179 ~~~L~l~~n~l~  190 (570)
T 2z63_A          179 NLSLDLSLNPMN  190 (570)
T ss_dssp             CCEEECTTCCCC
T ss_pred             hhhcccCCCCce
Confidence             56677766544

>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein, EF-hand, calcium ION, metal binding protein; HET: 1PE P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A

Probab=99.51  E-value=1e-13  Score=119.59  Aligned_cols=122  Identities=18%  Similarity=0.159  Sum_probs=103.4

Q ss_pred             CCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCC-CCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCccc
Q psy2947         311 GGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTT-KSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVP  389 (441)
Q Consensus       311 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d-~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is  389 (441)
                      .++++.+++..+....   ..+.++++.+|+.||.+ ++|.|+++||..++............+..+|+.+|.+++|.|+
T Consensus         5 ~~~l~~~~l~~l~~~~---~~~~~~i~~~f~~fd~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~g~i~   81 (190)
T 1g8i_A            5 NSKLKPEVVEELTRKT---YFTEKEVQQWYKGFIKDCPSGQLDAAGFQKIYKQFFPFGDPTKFATFVFNVFDENKDGRIE   81 (190)
T ss_dssp             CCSCCHHHHHHHHHTS---SSCHHHHHHHHHHHHHHCTTSEEEHHHHHHHHHHHCTTSCTHHHHHHHHHHHCTTCSSEEE
T ss_pred             cccCCHHHHHHHHHcc---CCCHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCCCCeEe
Confidence            4456667766666533   34678899999999998 8999999999999987733334467799999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         390 AKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       390 ~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      ++||..++...+...+.+++..+|+.+|.|++|.|+++||..++..
T Consensus        82 ~~ef~~~~~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~e~~~~l~~  127 (190)
T 1g8i_A           82 FSEFIQALSVTSRGTLDEKLRWAFKLYDLDNDGYITRNEMLDIVDA  127 (190)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHhhcCCCCCeECHHHHHHHHHH
Confidence            9999999998876677889999999999999999999999998865

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.51  E-value=2.1e-14  Score=136.66  Aligned_cols=188  Identities=17%  Similarity=0.197  Sum_probs=126.9

Q ss_pred             CCCC-CccCCC-CccCCC---CCCCCC-CcccEEeccCCCc---Cc-ccCCCCCCCEEEccCCCCC-cCCcC-ccCCCCC
Q psy2947          39 CQRN-CSLEVG-GICSHI---WIPQYF-SHAFLLSLSYTPI---GR-RIFKCDTVEVLSLKSNSLT-SLPPD-IGRLTNL  106 (441)
Q Consensus        39 C~~~-c~~~~~-~~c~~~---~~~~~l-~~L~~l~l~~n~i---~~-~~~~l~~L~~L~l~~n~l~-~lp~~-~~~l~~L  106 (441)
                      ||.. |+|..+ +.|++.   .+|..+ ++++.|+|++|.|   |. .+.++++|++|+|++|++. .+|.. |.++++|
T Consensus         2 Cp~~~C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l   81 (350)
T 4ay9_X            2 CHHRICHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL   81 (350)
T ss_dssp             CCCSSSEEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTC
T ss_pred             CCCCccEeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhh
Confidence            8864 999644 778763   455544 5899999999954   54 5778999999999999985 57765 8888887


Q ss_pred             cE-EEccCCcCCCCCC-chhhhcCCCCCEEEccCCCCCccc-hhhcCCCCCCEEEccC-CcCccCcc--ccc--------
Q psy2947         107 RV-LCLTDNCLQNASI-PFTLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHG-NHNYFKST--FMW--------  172 (441)
Q Consensus       107 ~~-L~l~~n~l~~~~~-p~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~-N~~~~~~~--~~~--------  172 (441)
                      .+ +.+++|+++  .+ |..+..+++|++|++++|+|..+| ..+....++..|++.+ |.+.....  +..        
T Consensus        82 ~~~l~~~~N~l~--~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L  159 (350)
T 4ay9_X           82 HEIRIEKANNLL--YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL  159 (350)
T ss_dssp             CEEEEEEETTCC--EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEE
T ss_pred             hhhhcccCCccc--ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhh
Confidence            75 666778888  55 456789999999999999998776 3344445555666644 23221110  000        


Q ss_pred             -----ccccccccccccchhHHH-H-hhcccccCCc-hhhhhhhhcccccccccCCCCCCCchhhh
Q psy2947         173 -----YHSDIHARIRSTSTRDEV-L-RKQKKLHQPS-RLQDLAVQSVIASKENFFEPGLFPGPLVD  230 (441)
Q Consensus       173 -----~~~~~p~~l~~l~~~~~~-l-~~~~~~~~p~-~l~~l~~l~~l~l~~n~~~~~~~p~~~~~  230 (441)
                           -...+|..+.....+..+ + .+|.+..+|+ .+..+++|+.|++++|.+..  +|.....
T Consensus       160 ~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~--lp~~~~~  223 (350)
T 4ay9_X          160 WLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS--LPSYGLE  223 (350)
T ss_dssp             ECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC--CCSSSCT
T ss_pred             ccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc--cChhhhc
Confidence                 001233333333333334 3 4577888885 46899999999999998765  7765433

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.51  E-value=9.4e-15  Score=151.90  Aligned_cols=143  Identities=20%  Similarity=0.150  Sum_probs=115.6

Q ss_pred             CcccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEccCCCCCccchhhcCCCC
Q psy2947          74 GRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQ  153 (441)
Q Consensus        74 ~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~  153 (441)
                      |..+..++.|+.|+|++|.+..+|..+..+++|+.|+|++|.|+  .+|..++.+++|++|+|++|.|+.+|..|+.+++
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~  294 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ  294 (727)
T ss_dssp             -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred             hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence            45677889999999999999999999889999999999999998  8999999999999999999999999999999999


Q ss_pred             CCEEEccCCcCccCcccccccccccccccccchhHHH-Hhhccccc-CCchhhhhhhh-cccccccccCCCCCCCchhh
Q psy2947         154 LDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLH-QPSRLQDLAVQ-SVIASKENFFEPGLFPGPLV  229 (441)
Q Consensus       154 L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~-~p~~l~~l~~l-~~l~l~~n~~~~~~~p~~~~  229 (441)
                      |++|+|++|.+          ..+|..+..++.+..+ +++|.+.. +|..+..+... ..+++++|.+. +.+|..+.
T Consensus       295 L~~L~L~~N~l----------~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~-~~~p~~l~  362 (727)
T 4b8c_D          295 LKYFYFFDNMV----------TTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPE-IPLPHERR  362 (727)
T ss_dssp             CSEEECCSSCC----------CCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCC--
T ss_pred             CCEEECCCCCC----------CccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCccc-CcCccccc
Confidence            99999999986          3567778888888888 89998864 45555554322 34667777665 55666543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.51  E-value=1.4e-14  Score=135.46  Aligned_cols=152  Identities=15%  Similarity=0.066  Sum_probs=113.5

Q ss_pred             CCCCcccEEeccCCCcCc--------ccCCCCCCCEEEccCCCCCcCCc-CccCCCCCcEEEccCCcCCCCC--Cchh--
Q psy2947          58 QYFSHAFLLSLSYTPIGR--------RIFKCDTVEVLSLKSNSLTSLPP-DIGRLTNLRVLCLTDNCLQNAS--IPFT--  124 (441)
Q Consensus        58 ~~l~~L~~l~l~~n~i~~--------~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~~~--~p~~--  124 (441)
                      ..+++|+.|++++|.+..        .+..+++|++|+|++|+++.++. .|..+++|++|++++|++. +.  ++..  
T Consensus       114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~  192 (310)
T 4glp_A          114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGL-GERGLMAALC  192 (310)
T ss_dssp             CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTC-HHHHHHTTSC
T ss_pred             ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCc-cchhhhHHHh
Confidence            447889999999996653        23458899999999999986664 5889999999999999875 22  3222  


Q ss_pred             hhcCCCCCEEEccCCCCCccch----hhcCCCCCCEEEccCCcCccCccccccccccccccccc---chhHHH-Hhhccc
Q psy2947         125 LTFCKNLTHLYLDNNLLDALPG----FLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRST---STRDEV-LRKQKK  196 (441)
Q Consensus       125 ~~~l~~L~~L~l~~n~l~~lp~----~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l---~~~~~~-l~~~~~  196 (441)
                      +..+++|++|++++|+++.+|.    .+..+++|++|+|++|.+...         .|..+..+   +.+..+ +++|.+
T Consensus       193 ~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~---------~p~~~~~~~~~~~L~~L~Ls~N~l  263 (310)
T 4glp_A          193 PHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRAT---------VNPSAPRCMWSSALNSLNLSFAGL  263 (310)
T ss_dssp             TTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCC---------CCSCCSSCCCCTTCCCEECCSSCC
T ss_pred             hhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCcc---------chhhHHhccCcCcCCEEECCCCCC
Confidence            3678899999999999987764    356788999999999986332         24444443   455555 778888


Q ss_pred             ccCCchhhhhhhhcccccccccCCC
Q psy2947         197 LHQPSRLQDLAVQSVIASKENFFEP  221 (441)
Q Consensus       197 ~~~p~~l~~l~~l~~l~l~~n~~~~  221 (441)
                      ..+|..+.  ++|+.|+++.|.+..
T Consensus       264 ~~lp~~~~--~~L~~L~Ls~N~l~~  286 (310)
T 4glp_A          264 EQVPKGLP--AKLRVLDLSSNRLNR  286 (310)
T ss_dssp             CSCCSCCC--SCCSCEECCSCCCCS
T ss_pred             Cchhhhhc--CCCCEEECCCCcCCC
Confidence            88887664  788899999888764

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.51  E-value=6.4e-14  Score=140.79  Aligned_cols=156  Identities=19%  Similarity=0.192  Sum_probs=93.7

Q ss_pred             CCcccEEeccCCCcCcccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEccCC
Q psy2947          60 FSHAFLLSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNN  139 (441)
Q Consensus        60 l~~L~~l~l~~n~i~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n  139 (441)
                      +++|+.|+|++|.|......+++|++|+|++|+|+.+|. +..  +|+.|++++|.++  .+|.   .+++|+.|+|++|
T Consensus        79 ~~~L~~L~Ls~N~l~~ip~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~--~lp~---~l~~L~~L~Ls~N  150 (571)
T 3cvr_A           79 PPQITVLEITQNALISLPELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLT--MLPE---LPALLEYINADNN  150 (571)
T ss_dssp             CTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCS--CCCC---CCTTCCEEECCSS
T ss_pred             cCCCCEEECcCCCCcccccccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCC--CCCC---cCccccEEeCCCC
Confidence            467888888888443211445777777777777777776 544  6677777777666  3555   4556666666666


Q ss_pred             CCCccchhhcCCCCCCEEEccCCcCccCcccc----c------ccccccccccccchh-------HHH-HhhcccccCCc
Q psy2947         140 LLDALPGFLLSMPQLDTVYRHGNHNYFKSTFM----W------YHSDIHARIRSTSTR-------DEV-LRKQKKLHQPS  201 (441)
Q Consensus       140 ~l~~lp~~~~~l~~L~~L~l~~N~~~~~~~~~----~------~~~~~p~~l~~l~~~-------~~~-l~~~~~~~~p~  201 (441)
                      +|+.+|.   .+++|+.|+|++|++...+.+.    .      -...+|. +..  .+       ..+ +++|.+..+|.
T Consensus       151 ~l~~lp~---~l~~L~~L~Ls~N~L~~lp~l~~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~  224 (571)
T 3cvr_A          151 QLTMLPE---LPTSLEVLSVRNNQLTFLPELPESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPE  224 (571)
T ss_dssp             CCSCCCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCCCCCG
T ss_pred             ccCcCCC---cCCCcCEEECCCCCCCCcchhhCCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcceecCH
Confidence            6655554   3455555555555543322110    0      0012232 221  22       334 77888888998


Q ss_pred             hhhhhhhhcccccccccCCCCCCCchhhh
Q psy2947         202 RLQDLAVQSVIASKENFFEPGLFPGPLVD  230 (441)
Q Consensus       202 ~l~~l~~l~~l~l~~n~~~~~~~p~~~~~  230 (441)
                      .+..+++|+.|++++|++.. .+|..+..
T Consensus       225 ~l~~l~~L~~L~L~~N~l~~-~~p~~l~~  252 (571)
T 3cvr_A          225 NILSLDPTCTIILEDNPLSS-RIRESLSQ  252 (571)
T ss_dssp             GGGGSCTTEEEECCSSSCCH-HHHHHHHH
T ss_pred             HHhcCCCCCEEEeeCCcCCC-cCHHHHHH
Confidence            88889999999999998763 35555444

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.50  E-value=1.2e-14  Score=138.65  Aligned_cols=154  Identities=14%  Similarity=0.125  Sum_probs=130.5

Q ss_pred             CCCCCcccEEeccCCCc----CcccCCCCCCCEEEccCCCCCcCCcC-ccCCCCCcEEEccCCcCCCCCCch--hhhcCC
Q psy2947          57 PQYFSHAFLLSLSYTPI----GRRIFKCDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPF--TLTFCK  129 (441)
Q Consensus        57 ~~~l~~L~~l~l~~n~i----~~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~p~--~~~~l~  129 (441)
                      ...+++|+.|++++|.+    |..+..+++|++|+|++|+++.+|.. |..+++|++|++++|.++  .+|.  .+..++
T Consensus        72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~l~~~~~~~~l~  149 (353)
T 2z80_A           72 LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK--TLGETSLFSHLT  149 (353)
T ss_dssp             TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS--SSCSSCSCTTCT
T ss_pred             hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc--ccCchhhhccCC
Confidence            44688999999999955    34578899999999999999999987 899999999999999998  7876  678999


Q ss_pred             CCCEEEccCC-CCCccc-hhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCchh-hh
Q psy2947         130 NLTHLYLDNN-LLDALP-GFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSRL-QD  205 (441)
Q Consensus       130 ~L~~L~l~~n-~l~~lp-~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~l-~~  205 (441)
                      +|++|++++| .++.++ ..+..+++|+.|++++|.+.         ...|..+..++.+..+ +.+|.+..+|..+ ..
T Consensus       150 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~---------~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~  220 (353)
T 2z80_A          150 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ---------SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV  220 (353)
T ss_dssp             TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC---------EECTTTTTTCSEEEEEEEECSCSTTHHHHHHHH
T ss_pred             CCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC---------ccCHHHHhccccCCeecCCCCccccchhhhhhh
Confidence            9999999999 578775 67899999999999999953         3346677777777777 8888887777654 45


Q ss_pred             hhhhcccccccccCCC
Q psy2947         206 LAVQSVIASKENFFEP  221 (441)
Q Consensus       206 l~~l~~l~l~~n~~~~  221 (441)
                      ++.|+.+++++|.+..
T Consensus       221 ~~~L~~L~L~~n~l~~  236 (353)
T 2z80_A          221 TSSVECLELRDTDLDT  236 (353)
T ss_dssp             TTTEEEEEEESCBCTT
T ss_pred             cccccEEECCCCcccc
Confidence            8899999999998764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.50  E-value=4.5e-14  Score=133.24  Aligned_cols=149  Identities=19%  Similarity=0.168  Sum_probs=125.3

Q ss_pred             CCcccEEeccCCCcC----cccCCCCCCCEEEccCCCCC---cCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCC
Q psy2947          60 FSHAFLLSLSYTPIG----RRIFKCDTVEVLSLKSNSLT---SLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLT  132 (441)
Q Consensus        60 l~~L~~l~l~~n~i~----~~~~~l~~L~~L~l~~n~l~---~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~  132 (441)
                      .++|+.|++++|.+.    ..+..+++|+.|++++|.++   ..+..+..+++|+.|++++|.++  .+|..+.  ++|+
T Consensus       120 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~--~l~~~~~--~~L~  195 (330)
T 1xku_A          120 PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT--TIPQGLP--PSLT  195 (330)
T ss_dssp             CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC--SCCSSCC--TTCS
T ss_pred             cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc--cCCcccc--ccCC
Confidence            378999999999553    34678999999999999997   34556999999999999999998  7887654  8999


Q ss_pred             EEEccCCCCCcc-chhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCchhhhhhhhc
Q psy2947         133 HLYLDNNLLDAL-PGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSRLQDLAVQS  210 (441)
Q Consensus       133 ~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~l~~l~~l~  210 (441)
                      +|++++|.++.+ |..+..+++|+.|++++|.+..         ..+..+..++.+..+ +.+|.+..+|..+..++.|+
T Consensus       196 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~---------~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~  266 (330)
T 1xku_A          196 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA---------VDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQ  266 (330)
T ss_dssp             EEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE---------ECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCC
T ss_pred             EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce---------eChhhccCCCCCCEEECCCCcCccCChhhccCCCcC
Confidence            999999999877 5788999999999999999633         224466777777777 88899999999999999999


Q ss_pred             ccccccccCCC
Q psy2947         211 VIASKENFFEP  221 (441)
Q Consensus       211 ~l~l~~n~~~~  221 (441)
                      .+++++|.+..
T Consensus       267 ~L~l~~N~i~~  277 (330)
T 1xku_A          267 VVYLHNNNISA  277 (330)
T ss_dssp             EEECCSSCCCC
T ss_pred             EEECCCCcCCc
Confidence            99999998764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.50  E-value=9.4e-14  Score=131.14  Aligned_cols=179  Identities=16%  Similarity=0.150  Sum_probs=129.9

Q ss_pred             CCCCCcccEEeccCCCc----CcccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCch-hhhcCCCC
Q psy2947          57 PQYFSHAFLLSLSYTPI----GRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPF-TLTFCKNL  131 (441)
Q Consensus        57 ~~~l~~L~~l~l~~n~i----~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~-~~~~l~~L  131 (441)
                      ...+++|+.|++++|.+    |..+..+++|++|+|++|+++.+|..+.  ++|++|++++|.++  .+|. .+..+++|
T Consensus        74 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~--~~~~~~~~~l~~L  149 (332)
T 2ft3_A           74 FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIR--KVPKGVFSGLRNM  149 (332)
T ss_dssp             TTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCC--CCCSGGGSSCSSC
T ss_pred             hhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccC--ccCHhHhCCCccC
Confidence            34688999999999954    4668889999999999999999998865  89999999999998  5554 57889999


Q ss_pred             CEEEccCCCCCc---cchhhcCCCCCCEEEccCCcCccCccc-----c-------cccccccccccccchhHHH-Hhhcc
Q psy2947         132 THLYLDNNLLDA---LPGFLLSMPQLDTVYRHGNHNYFKSTF-----M-------WYHSDIHARIRSTSTRDEV-LRKQK  195 (441)
Q Consensus       132 ~~L~l~~n~l~~---lp~~~~~l~~L~~L~l~~N~~~~~~~~-----~-------~~~~~~p~~l~~l~~~~~~-l~~~~  195 (441)
                      ++|++++|.++.   .|..+..+ +|+.|++++|.+...+..     .       .+....+..+..++.+..+ +.+|.
T Consensus       150 ~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~  228 (332)
T 2ft3_A          150 NCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ  228 (332)
T ss_dssp             CEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC
T ss_pred             CEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence            999999999863   34666666 777777777775433210     0       0222233566777777777 78888


Q ss_pred             cccCCc-hhhhhhhhcccccccccCCCCCCCchhhhHHHhhhcCCccc
Q psy2947         196 KLHQPS-RLQDLAVQSVIASKENFFEPGLFPGPLVDYIAREYNQYHVC  242 (441)
Q Consensus       196 ~~~~p~-~l~~l~~l~~l~l~~n~~~~~~~p~~~~~~l~~~~~~~~~~  242 (441)
                      +..+++ .+..++.|+.|++++|.+.  .+|..+..........+..+
T Consensus       229 l~~~~~~~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N  274 (332)
T 2ft3_A          229 IRMIENGSLSFLPTLRELHLDNNKLS--RVPAGLPDLKLLQVVYLHTN  274 (332)
T ss_dssp             CCCCCTTGGGGCTTCCEEECCSSCCC--BCCTTGGGCTTCCEEECCSS
T ss_pred             CCcCChhHhhCCCCCCEEECCCCcCe--ecChhhhcCccCCEEECCCC
Confidence            877764 6888889999999988776  37776655333333444443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.50  E-value=5e-14  Score=149.54  Aligned_cols=156  Identities=17%  Similarity=0.124  Sum_probs=94.9

Q ss_pred             CCCCCCcccEEeccCCCc----CcccCCCCCCCEEEccCCCC-CcC-CcCccCCCCCcEEEccCCcCCCCCCchhhhcCC
Q psy2947          56 IPQYFSHAFLLSLSYTPI----GRRIFKCDTVEVLSLKSNSL-TSL-PPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCK  129 (441)
Q Consensus        56 ~~~~l~~L~~l~l~~n~i----~~~~~~l~~L~~L~l~~n~l-~~l-p~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~  129 (441)
                      +|..+++|+.|+|++|.|    |..+..+++|++|+|++|.+ ..+ |..|.++++|++|+|++|.++ +..|..+.+++
T Consensus        19 vP~lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~-~~~p~~~~~l~   97 (844)
T 3j0a_A           19 VPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQGLF   97 (844)
T ss_dssp             CCSSCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC-EECTTSSCSCS
T ss_pred             CCCCCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc-ccCHhHccCCc
Confidence            344446777777777743    34566777777777777743 355 444777777777777777776 44466677777


Q ss_pred             CCCEEEccCCCCCc-cchh--hcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-Hhhccccc-CCchhh
Q psy2947         130 NLTHLYLDNNLLDA-LPGF--LLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLH-QPSRLQ  204 (441)
Q Consensus       130 ~L~~L~l~~n~l~~-lp~~--~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~-~p~~l~  204 (441)
                      +|++|+|++|.++. +|..  +.++++|++|++++|.+....        .+..+..++.+..+ +.+|.+.. .|..+.
T Consensus        98 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~--------~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~  169 (844)
T 3j0a_A           98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY--------LHPSFGKLNSLKSIDFSSNQIFLVCEHELE  169 (844)
T ss_dssp             SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC--------CCGGGGTCSSCCEEEEESSCCCCCCSGGGH
T ss_pred             ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccc--------cchhHhhCCCCCEEECCCCcCCeeCHHHcc
Confidence            77777777777753 4433  667777777777777653211        12345555555555 55555533 344555


Q ss_pred             hh--hhhcccccccccCC
Q psy2947         205 DL--AVQSVIASKENFFE  220 (441)
Q Consensus       205 ~l--~~l~~l~l~~n~~~  220 (441)
                      .+  ++|+.++++.|.+.
T Consensus       170 ~l~~~~L~~L~L~~n~l~  187 (844)
T 3j0a_A          170 PLQGKTLSFFSLAANSLY  187 (844)
T ss_dssp             HHHHCSSCCCEECCSBSC
T ss_pred             cccCCccceEECCCCccc
Confidence            55  55666666665543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.49  E-value=1.8e-14  Score=143.14  Aligned_cols=109  Identities=19%  Similarity=0.166  Sum_probs=82.9

Q ss_pred             CCCCCcccEEeccCCCc----CcccCCCCCCCEEEccCCCCCcCCcC-ccCCCCCcEEEccCCcCCCCCCchhhhcCCCC
Q psy2947          57 PQYFSHAFLLSLSYTPI----GRRIFKCDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPFTLTFCKNL  131 (441)
Q Consensus        57 ~~~l~~L~~l~l~~n~i----~~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L  131 (441)
                      +..+++|+.|+|++|.|    |..+.++++|++|+|++|+++.+|.. |..+++|++|++++|.+. +..|..+..+++|
T Consensus        52 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L  130 (477)
T 2id5_A           52 FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNL  130 (477)
T ss_dssp             TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCC-EECTTTTTTCTTC
T ss_pred             ccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccc-cCChhHccccccC
Confidence            34577888888888844    45677788888888888888877765 778888888888888887 4456667788888


Q ss_pred             CEEEccCCCCCccc-hhhcCCCCCCEEEccCCcCcc
Q psy2947         132 THLYLDNNLLDALP-GFLLSMPQLDTVYRHGNHNYF  166 (441)
Q Consensus       132 ~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~N~~~~  166 (441)
                      ++|++++|.+..++ ..|..+++|+.|++++|.+..
T Consensus       131 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  166 (477)
T 2id5_A          131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS  166 (477)
T ss_dssp             CEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS
T ss_pred             CEEECCCCccceeChhhccCCCCCCEEECCCCcCcc
Confidence            88888888887664 567778888888888887543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.49  E-value=1.3e-14  Score=135.76  Aligned_cols=160  Identities=14%  Similarity=0.014  Sum_probs=122.8

Q ss_pred             CCcccEEeccCCCc----Cccc--CCCCCCCEEEccCCCCCc-CC----cCccCCCCCcEEEccCCcCCCCCCchhhhcC
Q psy2947          60 FSHAFLLSLSYTPI----GRRI--FKCDTVEVLSLKSNSLTS-LP----PDIGRLTNLRVLCLTDNCLQNASIPFTLTFC  128 (441)
Q Consensus        60 l~~L~~l~l~~n~i----~~~~--~~l~~L~~L~l~~n~l~~-lp----~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l  128 (441)
                      +++|+.|++++|.+    |..+  ..+++|++|+|++|.++. .|    ..+..+++|++|++++|.+. +..|..+..+
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l  168 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSP-AFSCEQVRAF  168 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSC-CCCTTSCCCC
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcc-hhhHHHhccC
Confidence            45699999999944    4555  778999999999999994 33    23567999999999999998 5556778999


Q ss_pred             CCCCEEEccCCCCCc---cc--hhhcCCCCCCEEEccCCcCccCccccccccccccc-ccccchhHHH-HhhcccccC-C
Q psy2947         129 KNLTHLYLDNNLLDA---LP--GFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHAR-IRSTSTRDEV-LRKQKKLHQ-P  200 (441)
Q Consensus       129 ~~L~~L~l~~n~l~~---lp--~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~-l~~l~~~~~~-l~~~~~~~~-p  200 (441)
                      ++|++|+|++|++..   ++  ..++.+++|++|++++|.+....       ..+.+ +..++.+..+ +++|.+... |
T Consensus       169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-------~~~~~l~~~l~~L~~L~Ls~N~l~~~~p  241 (310)
T 4glp_A          169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPT-------GVCAALAAAGVQPHSLDLSHNSLRATVN  241 (310)
T ss_dssp             TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHH-------HHHHHHHHHTCCCSSEECTTSCCCCCCC
T ss_pred             CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchH-------HHHHHHHhcCCCCCEEECCCCCCCccch
Confidence            999999999999854   43  33468899999999999974321       11222 3556677777 888988776 7


Q ss_pred             chhhhh---hhhcccccccccCCCCCCCchhh
Q psy2947         201 SRLQDL---AVQSVIASKENFFEPGLFPGPLV  229 (441)
Q Consensus       201 ~~l~~l---~~l~~l~l~~n~~~~~~~p~~~~  229 (441)
                      +.+..+   +.|+.|++++|.+..  +|..+.
T Consensus       242 ~~~~~~~~~~~L~~L~Ls~N~l~~--lp~~~~  271 (310)
T 4glp_A          242 PSAPRCMWSSALNSLNLSFAGLEQ--VPKGLP  271 (310)
T ss_dssp             SCCSSCCCCTTCCCEECCSSCCCS--CCSCCC
T ss_pred             hhHHhccCcCcCCEEECCCCCCCc--hhhhhc
Confidence            777776   699999999998873  776654

>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding protein, CBP40, metal binding protein; 3.00A {Physarum polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A

Probab=99.49  E-value=2.2e-14  Score=134.33  Aligned_cols=117  Identities=21%  Similarity=0.391  Sum_probs=83.6

Q ss_pred             HhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCc
Q psy2947         308 AEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGT  387 (441)
Q Consensus       308 ~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~  387 (441)
                      .+++|.|+.+||..++..... ..+...+..+|..+|.|++|.|++.+|..++..       ...+..+|..+|.+++|+
T Consensus       133 ~d~dG~Is~~El~~~L~~lg~-~~~~~~i~~l~~~~D~d~~G~I~f~ef~~l~~~-------~~~l~~~F~~~D~d~dG~  204 (323)
T 1ij5_A          133 VSGSGKFSFQDLKQVLAKYAD-TIPEGPLKKLFVMVENDTKGRMSYITLVAVAND-------LAALVADFRKIDTNSNGT  204 (323)
T ss_dssp             STTSSCCCHHHHHHHHHHHHT-TSCSSHHHHHHHHHHHCCSSTHHHHHHTTSHHH-------HHTSCCCHHHHCTTCCSE
T ss_pred             CCCCCCCcHHHHHHHHHHcCC-CCCHHHHHHHHHHhcCCCCCcCcHHHHHhhhhH-------HHHHHHHHHHHCCCCCCc
Confidence            478999999999999987643 344556777777777777777777777654422       234455677777777777


Q ss_pred             ccHHHHHHHHHHhCCCCCHHHHHH-HHHHhCCCCCCceeHHHHHHHHh
Q psy2947         388 VPAKYLKHVLVNWGEGLSSKEVDQ-IFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       388 is~~ef~~~l~~~~~~l~~~~~~~-l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      |+.+||..++  +|..++.+++.. ++..+|.|++|.|+|+||+.++.
T Consensus       205 Is~~El~~~l--~g~~~~~~ei~~~l~~~~D~d~dG~Is~~EF~~~l~  250 (323)
T 1ij5_A          205 LSRKEFREHF--VRLGFDKKSVQDALFRYADEDESDDVGFSEYVHLGL  250 (323)
T ss_dssp             ECHHHHHHHH--HHTTCCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHH
T ss_pred             CcHHHHHHHH--cCCCCCHHHHHHHHHHHhcCCCCCEEeHHHHHHHHH
Confidence            7777777777  566666777777 77777777777777777776654

>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A

Probab=99.49  E-value=1.4e-13  Score=107.33  Aligned_cols=99  Identities=14%  Similarity=0.253  Sum_probs=82.4

Q ss_pred             CcCHHHHHHHHH--hCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhc--cCCCChHH
Q psy2947         297 SPTIAELKKYLA--EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHS--KAEDIPKE  372 (441)
Q Consensus       297 ~~~~~~~~~~~~--~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~--~~~~~~~~  372 (441)
                      .++..++.+++.  +++|.|+++||..++..   .....+.++.+|+.+|.|++|.|+.+||..++....  ......++
T Consensus         6 ~~~~~ei~~~~~~~D~~g~i~~~eF~~~~~~---~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~   82 (109)
T 3fs7_A            6 ILSAKDIESALSSCQAADSFNYKSFFSTVGL---SSKTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAE   82 (109)
T ss_dssp             TSCHHHHHHHHHHTCSTTCCCHHHHHHHHTC---TTCCHHHHHHHHHHHSTTCSSSBCHHHHHTTGGGTCTTSCCCCHHH
T ss_pred             cCCHHHHHHHHHhcCCCCcCcHHHHHHHHhc---CCCcHHHHHHHHHHHCCCCCCeEeHHHHHHHHHHHhcccccCCHHH
Confidence            344555555554  47899999999999874   245678999999999999999999999999988763  34556789


Q ss_pred             HHHHHHHhCCCCCCcccHHHHHHHHH
Q psy2947         373 VVDAFKAADTTKSGTVPAKYLKHVLV  398 (441)
Q Consensus       373 ~~~~f~~~D~~~~G~is~~ef~~~l~  398 (441)
                      ++.+|+.+|.+++|.|+++||.++++
T Consensus        83 ~~~~~~~~D~~~dg~i~~~EF~~~~~  108 (109)
T 3fs7_A           83 TKAFLAAGDTDGDGKIGVEEFQSLVK  108 (109)
T ss_dssp             HHHHHHHHCTTCSSSBCHHHHHHHHT
T ss_pred             HHHHHHHhCCCCCCcCcHHHHHHHHh
Confidence            99999999999999999999999874

>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4

Probab=99.49  E-value=3e-13  Score=105.46  Aligned_cols=99  Identities=15%  Similarity=0.278  Sum_probs=81.6

Q ss_pred             cCHHHHHHHHH--hCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhc--cCCCChHHH
Q psy2947         298 PTIAELKKYLA--EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHS--KAEDIPKEV  373 (441)
Q Consensus       298 ~~~~~~~~~~~--~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~--~~~~~~~~~  373 (441)
                      ++..++.+++.  +++|.|+++||..++..   .....+.++.+|+.+|.|++|.|+.+||..++....  ......+++
T Consensus         6 ~s~~ei~~~~~~~d~~g~i~~~eF~~~~~~---~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~g~~~~~~~~   82 (109)
T 5pal_A            6 LKADDINKAISAFKDPGTFDYKRFFHLVGL---KGKTDAQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTET   82 (109)
T ss_dssp             SCHHHHHHHHHHTCSTTCCCHHHHHHHHTC---TTCCHHHHHHHHHHHCTTCSSEECHHHHHTHHHHHCTTCCCCCHHHH
T ss_pred             CCHHHHHHHHHHhCCCCcCcHHHHHHHHhh---ccCcHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHcCCCCCHHHH
Confidence            33444444443  34899999999998864   245678999999999999999999999999998762  445567889


Q ss_pred             HHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         374 VDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       374 ~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      +.+|+.+|.+++|.|+++||.++++.
T Consensus        83 ~~~~~~~D~~~dg~i~~~eF~~~~~~  108 (109)
T 5pal_A           83 KALLAAGDSDHDGKIGADEFAKMVAQ  108 (109)
T ss_dssp             HHHHHHHCTTCSSSEEHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCCcCcHHHHHHHHHh
Confidence            99999999999999999999999875

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.49  E-value=3.4e-13  Score=115.06  Aligned_cols=123  Identities=28%  Similarity=0.330  Sum_probs=99.6

Q ss_pred             ccEEeccCC---CcCcccCCCCCCCEEEccCCCCCcCCcC-ccCCCCCcEEEccCCcCCCCCCch-hhhcCCCCCEEEcc
Q psy2947          63 AFLLSLSYT---PIGRRIFKCDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPF-TLTFCKNLTHLYLD  137 (441)
Q Consensus        63 L~~l~l~~n---~i~~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~p~-~~~~l~~L~~L~l~  137 (441)
                      .+.+++++|   .+|..+  .++|+.|++++|+++.+|.. |..+++|++|++++|.++  .+|. .+..+++|++|+++
T Consensus         9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ--SLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC--CCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce--EeChhHccCCCccCEEECC
Confidence            467888887   445433  37899999999999988876 789999999999999998  5655 46899999999999


Q ss_pred             CCCCCccch-hhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHHHhhcccccCCc-hhhhhhhhcccccc
Q psy2947         138 NNLLDALPG-FLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEVLRKQKKLHQPS-RLQDLAVQSVIASK  215 (441)
Q Consensus       138 ~n~l~~lp~-~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~l~~~~~~~~p~-~l~~l~~l~~l~l~  215 (441)
                      +|+|+.+|. .+..+++|+.|++++|.+.                                .+|. .+..+++|+.++++
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~--------------------------------~~~~~~~~~l~~L~~L~l~  132 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLK--------------------------------SVPDGIFDRLTSLQKIWLH  132 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCS--------------------------------CCCTTTTTTCTTCCEEECC
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcce--------------------------------EeCHHHhcCCcccCEEEec
Confidence            999998874 5788999999999999852                                2232 24567888899999


Q ss_pred             cccCCC
Q psy2947         216 ENFFEP  221 (441)
Q Consensus       216 ~n~~~~  221 (441)
                      +|++.+
T Consensus       133 ~N~~~~  138 (177)
T 2o6r_A          133 TNPWDC  138 (177)
T ss_dssp             SSCBCC
T ss_pred             CCCeec
Confidence            998875

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.48  E-value=5.7e-14  Score=142.40  Aligned_cols=152  Identities=16%  Similarity=0.152  Sum_probs=123.1

Q ss_pred             CcccEEeccCCCcCccc--CCCCCCCEEEccCCCCCc-CCcCccCCCCCcEEEccCCcCCCCCCc---hhhhcCCCCCEE
Q psy2947          61 SHAFLLSLSYTPIGRRI--FKCDTVEVLSLKSNSLTS-LPPDIGRLTNLRVLCLTDNCLQNASIP---FTLTFCKNLTHL  134 (441)
Q Consensus        61 ~~L~~l~l~~n~i~~~~--~~l~~L~~L~l~~n~l~~-lp~~~~~l~~L~~L~l~~n~l~~~~~p---~~~~~l~~L~~L  134 (441)
                      .+|+.|++++|.+....  ..+++|++|++++|+++. +|..+..+++|+.|++++|+++  .+|   ..+..+++|++|
T Consensus       331 ~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~~~l~~L~~L  408 (562)
T 3a79_B          331 MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK--NFFKVALMTKNMSSLETL  408 (562)
T ss_dssp             CCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCC--BTTHHHHTTTTCTTCCEE
T ss_pred             CcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcC--CcccchhhhcCCCCCCEE
Confidence            34777888888665433  678999999999999994 7888999999999999999998  444   567899999999


Q ss_pred             EccCCCCCc-cch-hhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCchhhhhhhhcc
Q psy2947         135 YLDNNLLDA-LPG-FLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSRLQDLAVQSV  211 (441)
Q Consensus       135 ~l~~n~l~~-lp~-~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~l~~l~~l~~  211 (441)
                      ++++|+++. +|. .+..+++|+.|++++|++.         +.+|..+.  +.+..+ +++|.+..+|..+..++.|+.
T Consensus       409 ~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~---------~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~  477 (562)
T 3a79_B          409 DVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT---------GSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQE  477 (562)
T ss_dssp             ECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCC---------GGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSE
T ss_pred             ECCCCcCCCccChhhhcCcccCCEEECCCCCCC---------cchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCE
Confidence            999999976 884 5788999999999999953         23333332  334445 788899999998999999999


Q ss_pred             cccccccCCCCCCCch
Q psy2947         212 IASKENFFEPGLFPGP  227 (441)
Q Consensus       212 l~l~~n~~~~~~~p~~  227 (441)
                      |++++|.+..  +|..
T Consensus       478 L~L~~N~l~~--l~~~  491 (562)
T 3a79_B          478 LNVASNQLKS--VPDG  491 (562)
T ss_dssp             EECCSSCCCC--CCTT
T ss_pred             EECCCCCCCC--CCHH
Confidence            9999998874  7765

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.48  E-value=6.7e-14  Score=121.73  Aligned_cols=107  Identities=17%  Similarity=0.170  Sum_probs=94.5

Q ss_pred             CCCCcccEEeccCCCc--CcccCCCCCCCEEEccCCCCC-cCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEE
Q psy2947          58 QYFSHAFLLSLSYTPI--GRRIFKCDTVEVLSLKSNSLT-SLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHL  134 (441)
Q Consensus        58 ~~l~~L~~l~l~~n~i--~~~~~~l~~L~~L~l~~n~l~-~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L  134 (441)
                      ..+++|+.|++++|.+  +..+..+++|++|++++|.++ ..|..++.+++|++|++++|.++ +..|..+..+++|++|
T Consensus        63 ~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~-~~~~~~l~~l~~L~~L  141 (197)
T 4ezg_A           63 EYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD-DSILTKINTLPKVNSI  141 (197)
T ss_dssp             GGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCB-GGGHHHHTTCSSCCEE
T ss_pred             hcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccC-cHhHHHHhhCCCCCEE
Confidence            4578999999999954  356888999999999999999 47788999999999999999998 5678889999999999


Q ss_pred             EccCCC-CCccchhhcCCCCCCEEEccCCcCcc
Q psy2947         135 YLDNNL-LDALPGFLLSMPQLDTVYRHGNHNYF  166 (441)
Q Consensus       135 ~l~~n~-l~~lp~~~~~l~~L~~L~l~~N~~~~  166 (441)
                      ++++|. ++.+| .+..+++|+.|++++|++..
T Consensus       142 ~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~  173 (197)
T 4ezg_A          142 DLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD  173 (197)
T ss_dssp             ECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC
T ss_pred             EccCCCCccccH-hhcCCCCCCEEECCCCCCcC
Confidence            999998 88888 68889999999999999643

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.48  E-value=8.1e-14  Score=144.60  Aligned_cols=149  Identities=21%  Similarity=0.217  Sum_probs=115.6

Q ss_pred             CcccEEeccCCCc---C-cccCCCCCCCEEEccCCCCCcCCc-CccCCCCCcEEEccCCcCCCCCCch-hhhcCCCCCEE
Q psy2947          61 SHAFLLSLSYTPI---G-RRIFKCDTVEVLSLKSNSLTSLPP-DIGRLTNLRVLCLTDNCLQNASIPF-TLTFCKNLTHL  134 (441)
Q Consensus        61 ~~L~~l~l~~n~i---~-~~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~~~~p~-~~~~l~~L~~L  134 (441)
                      ++|+.|++++|.+   | ..+..+++|++|+|++|.++.+++ .|+.+++|++|++++|.++  .+|. .++.+++|++|
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~l~~~~~~~l~~L~~L  102 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS--QLSDKTFAFCTNLTEL  102 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC--CCCTTTTTTCTTCSEE
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC--ccChhhhccCCCCCEE
Confidence            6899999999843   3 357788999999999999996644 4889999999999999998  6776 58899999999


Q ss_pred             EccCCCCCccc-hhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCch-hh--hhhhh
Q psy2947         135 YLDNNLLDALP-GFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSR-LQ--DLAVQ  209 (441)
Q Consensus       135 ~l~~n~l~~lp-~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~-l~--~l~~l  209 (441)
                      ++++|.++.+| ..|+++++|++|++++|.+..         ..|..+..++.+..+ +.+|.+..+++. +.  .++.|
T Consensus       103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~---------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L  173 (680)
T 1ziw_A          103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS---------TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL  173 (680)
T ss_dssp             ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSC---------CCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEE
T ss_pred             ECCCCccCccChhHccccCCCCEEECCCCcccc---------cCchhhcccccCCEEEccCCcccccCHHHhhccccccc
Confidence            99999998887 678889999999999998533         234556666666666 777777666543 32  34678


Q ss_pred             cccccccccCC
Q psy2947         210 SVIASKENFFE  220 (441)
Q Consensus       210 ~~l~l~~n~~~  220 (441)
                      +.++++.|.+.
T Consensus       174 ~~L~L~~n~l~  184 (680)
T 1ziw_A          174 KKLELSSNQIK  184 (680)
T ss_dssp             SEEECTTCCCC
T ss_pred             cEEECCCCccc
Confidence            88888887654

>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A

Probab=99.48  E-value=2.9e-13  Score=105.36  Aligned_cols=98  Identities=15%  Similarity=0.169  Sum_probs=81.7

Q ss_pred             cCHHHHHHHHH--hCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhc--cCCCChHHH
Q psy2947         298 PTIAELKKYLA--EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHS--KAEDIPKEV  373 (441)
Q Consensus       298 ~~~~~~~~~~~--~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~--~~~~~~~~~  373 (441)
                      ++..++..++.  +++|.|+++||..++...   ....+.++.+|+.+|.|++|.|+.+||..++....  ......+++
T Consensus         6 ~~~~e~~~l~~~~d~~g~i~~~eF~~~~~~~---~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~   82 (108)
T 2pvb_A            6 LKDADVAAALAACSAADSFKHKEFFAKVGLA---SKSLDDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAET   82 (108)
T ss_dssp             SCHHHHHHHHHHTCSTTCCCHHHHHHHHTGG---GSCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTSCCCCHHHH
T ss_pred             CCHHHHHHHHHHhCCCCcCcHHHHHHHHhCC---hhHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHhccCCCCCHHHH
Confidence            55555555554  478999999999998542   34678999999999999999999999999998763  344567899


Q ss_pred             HHHHHHhCCCCCCcccHHHHHHHHH
Q psy2947         374 VDAFKAADTTKSGTVPAKYLKHVLV  398 (441)
Q Consensus       374 ~~~f~~~D~~~~G~is~~ef~~~l~  398 (441)
                      +.+|+.+|.+++|.|+++||.+++.
T Consensus        83 ~~~~~~~D~~~dg~i~~~eF~~~~~  107 (108)
T 2pvb_A           83 KAFLADGDKDGDGMIGVDEFAAMIK  107 (108)
T ss_dssp             HHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred             HHHHHHhCCCCCCcEeHHHHHHHHh
Confidence            9999999999999999999999875

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.48  E-value=5.8e-14  Score=139.71  Aligned_cols=137  Identities=20%  Similarity=0.283  Sum_probs=97.3

Q ss_pred             cccchHHHHHhhhccccC--CCccCHHHHHHHH----HHcCCCcC----------HHHHHHHHH----hCCCcccHHHHH
Q psy2947         261 FKTPYLEFRECFFLFARN--GTIKTLDELSVIM----RSLGMSPT----------IAELKKYLA----EKGGKLSFPDFL  320 (441)
Q Consensus       261 ~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~----~~~~~~~~----------~~~~~~~~~----~~~g~i~~~ef~  320 (441)
                      +.+++.+++++|..+|.+  |.| +.+|+..++    +.++..++          ..++..++.    +++|.|+++||.
T Consensus       326 ~~~~~~~l~~~F~~~D~d~dG~I-~~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~I~~~Ef~  404 (486)
T 3mwu_A          326 TLDETKQLTEIFRKLDTNNDGML-DRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPLLDMDGSGSIEYSEFI  404 (486)
T ss_dssp             CHHHHHHHHHHHHHHCTTCSSSB-CHHHHHHHHHHHHHHHTCCGGGHHHHTSSCHHHHHHHHHHHHCTTCCSSBCHHHHH
T ss_pred             cHHHHHHHHHHHHHhCCCCCcee-eHHHHHHHHHHhhhhhcccchhcccccchhhHHHHHHHHHHhcCCCCCcCcHHHHH
Confidence            567889999999999986  889 899995554    44465554          566666554    789999999999


Q ss_pred             HHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         321 KVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      .++.... .....+.+..+|+.||.|++|.|+.+||..++... +.....++++.+|+.+|.|+||.|+++||.+++...
T Consensus       405 ~~~~~~~-~~~~~~~~~~~F~~~D~d~dG~Is~~El~~~l~~~-g~~~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~~  482 (486)
T 3mwu_A          405 ASAIDRT-ILLSRERMERAFKMFDKDGSGKISTKELFKLFSQA-DSSIQMEELESIIEQVDNNKDGEVDFNEFVEMLQNF  482 (486)
T ss_dssp             HHHSCTT-TTCCHHHHHHHHHHHCSSCSSSBCSSCC---------------------CCCCSSCSSSBCHHHHHHHHHHH
T ss_pred             HHHHhhh-ccchHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHc-CCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHh
Confidence            9886542 23567889999999999999999999999998876 334456789999999999999999999999999874

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.48  E-value=1.5e-13  Score=138.00  Aligned_cols=94  Identities=29%  Similarity=0.333  Sum_probs=81.6

Q ss_pred             CcccEEeccCCC---cCcccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEcc
Q psy2947          61 SHAFLLSLSYTP---IGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLD  137 (441)
Q Consensus        61 ~~L~~l~l~~n~---i~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~  137 (441)
                      .+|+.|++++|.   ||..+  +++|++|+|++|.|+.+|   ..+++|+.|++++|.|+  .+|. +..  +|++|+|+
T Consensus        59 ~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~--~ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLS--TLPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TTCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCS--CCCC-CCT--TCCEEECC
T ss_pred             CCccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCC--Ccch-hhc--CCCEEECC
Confidence            378999999984   55555  378999999999999999   45799999999999998  5888 654  99999999


Q ss_pred             CCCCCccchhhcCCCCCCEEEccCCcCccC
Q psy2947         138 NNLLDALPGFLLSMPQLDTVYRHGNHNYFK  167 (441)
Q Consensus       138 ~n~l~~lp~~~~~l~~L~~L~l~~N~~~~~  167 (441)
                      +|+|+.+|.   .+++|+.|++++|.+...
T Consensus       129 ~N~l~~lp~---~l~~L~~L~Ls~N~l~~l  155 (571)
T 3cvr_A          129 NNQLTMLPE---LPALLEYINADNNQLTML  155 (571)
T ss_dssp             SSCCSCCCC---CCTTCCEEECCSSCCSCC
T ss_pred             CCcCCCCCC---cCccccEEeCCCCccCcC
Confidence            999999998   689999999999997543

>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4

Probab=99.47  E-value=3.3e-13  Score=105.23  Aligned_cols=102  Identities=16%  Similarity=0.187  Sum_probs=84.8

Q ss_pred             cCCCcCHHHHHHHHH--hCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhc--cCCCC
Q psy2947         294 LGMSPTIAELKKYLA--EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHS--KAEDI  369 (441)
Q Consensus       294 ~~~~~~~~~~~~~~~--~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~--~~~~~  369 (441)
                      ++..++..++..++.  +++|.|+++||..++...   ....+.++.+|+.+|.|++|.|+.+||..++....  .....
T Consensus         3 lg~~~~~~e~~~~~~~~d~~g~i~~~eF~~~~~~~---~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~   79 (109)
T 1bu3_A            3 FSGILADADVAAALKACEAADSFNYKAFFAKVGLT---AKSADDIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALT   79 (109)
T ss_dssp             CSCSSCHHHHHHHHHHTCSTTCCCHHHHHHHHTGG---GSCHHHHHHHHHHHCTTCSSSEEHHHHHTHHHHHSTTCCCCC
T ss_pred             ccccCCHHHHHHHHHHhCCCCcCcHHHHHHHHHcC---hhhHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHcccCCCCC
Confidence            345566666666654  478999999999988643   34678899999999999999999999999998873  34456


Q ss_pred             hHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy2947         370 PKEVVDAFKAADTTKSGTVPAKYLKHVLV  398 (441)
Q Consensus       370 ~~~~~~~f~~~D~~~~G~is~~ef~~~l~  398 (441)
                      .++++.+|+.+|.+++|.|+++||.++++
T Consensus        80 ~~~~~~~~~~~D~~~dg~i~~~eF~~~~~  108 (109)
T 1bu3_A           80 DAETKAFLKAGDSDGDGAIGVDEWAALVK  108 (109)
T ss_dssp             HHHHHHHHHHHCTTCSSEECHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCCCCCcEeHHHHHHHHh
Confidence            78999999999999999999999999874

>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+) requirement, hydrolase chimera; 2.80A {Rattus norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3

Probab=99.47  E-value=8e-14  Score=148.39  Aligned_cols=154  Identities=14%  Similarity=0.167  Sum_probs=121.3

Q ss_pred             chHHHHHhhhccc-cCCCccCHHHHHHHHHHcCC--------CcCHHHHHHHHH----hCCCcccHHHHHHHHHhhcCCC
Q psy2947         264 PYLEFRECFFLFA-RNGTIKTLDELSVIMRSLGM--------SPTIAELKKYLA----EKGGKLSFPDFLKVMHTHSKAE  330 (441)
Q Consensus       264 ~~~~l~~~f~~~d-~~G~i~~~~el~~~~~~~~~--------~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~~~~  330 (441)
                      +.++++++|..+| .+|.| +.+|++.+++.++.        .++..++..++.    +++|.|+++||..++...    
T Consensus       532 ~~~~l~~~F~~~D~~dG~I-s~~El~~~L~~~~~~~~~~~~~~~s~~~~~~l~~~~D~d~~G~I~~~EF~~~~~~~----  606 (900)
T 1qxp_A          532 IDDNFKTLFSKLAGDDMEI-SVKELQTILNRIISKHKDLRTNGFSLESCRSMVNLMDRDGNGKLGLVEFNILWNRI----  606 (900)
T ss_dssp             ---------CCCCCSSSSC-CCSCTTTTTCC---------CCCCCHHHHHHHHHHHCC--CCCCCSSSHHHHHHHH----
T ss_pred             HHHHHHHHHHHHcCCCCcC-CHHHHHHHHHHhhcccccccCCCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHH----
Confidence            3788999999998 23888 88999999888754        677888877765    688999999999999865    


Q ss_pred             CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHH
Q psy2947         331 DIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVD  410 (441)
Q Consensus       331 ~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~  410 (441)
                         +.++.+|+.+|.|++|.|+.+||..++.... .....++++.+|+.+| +++|.|+++||..++...      +.+.
T Consensus       607 ---~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g-~~l~~~~~~~l~~~~d-d~dg~I~~~eF~~~~~~~------~~l~  675 (900)
T 1qxp_A          607 ---RNYLTIFRKFDLDKSGSMSAYEMRMAIEAAG-FKLPCQLHQVIVARFA-DDELIIDFDNFVRCLVRL------EILF  675 (900)
T ss_dssp             ---HHHHHHHGGGCTTCCSCCBHHHHHHHHHHTT-EECCHHHHHHHHHHTS-CSSSBCCHHHHHHHHHHH------HHHH
T ss_pred             ---HHHHHHHHhhCCCCCCeECHHHHHHHHHHhC-CCCCHHHHHHHHHHhC-CCCCeEcHHHHHHHHHHH------HHHH
Confidence               7899999999999999999999999998763 3455788999999999 999999999999999764      6788


Q ss_pred             HHHHHhCCCCCCce--eHHHHHHHH
Q psy2947         411 QIFREANVTMNSKV--RYEDFVKIA  433 (441)
Q Consensus       411 ~l~~~~d~d~dg~i--~~~ef~~~l  433 (441)
                      .+|+.+|.+++|.|  +++||+.++
T Consensus       676 ~~F~~~D~d~~G~It~~~~efl~~~  700 (900)
T 1qxp_A          676 KIFKQLDPENTGTIQLDLISWLSFS  700 (900)
T ss_dssp             HHHHHSCSSCCSCEEEEHHHHHHHT
T ss_pred             HHHHhhCCCCCceEEecHHHHHHHh
Confidence            99999999999988  458988765

>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A

Probab=99.46  E-value=6.1e-13  Score=109.93  Aligned_cols=103  Identities=21%  Similarity=0.312  Sum_probs=90.5

Q ss_pred             CHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q psy2947         283 TLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHT  362 (441)
Q Consensus       283 ~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~  362 (441)
                      +..++..++...+            .+++|.++++||...+..........+.++.+|+.||.|++|+|+.+||+.++..
T Consensus        44 ~~~~~~~~~~~~d------------~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~aF~~~D~d~~G~I~~~El~~~l~~  111 (148)
T 2lmt_A           44 TEAELQDLIAEAE------------NNNNGQLNFTEFCGIMAKQMRETDTEEEMREAFKIFDRDGDGFISPAELRFVMIN  111 (148)
T ss_dssp             CHHHHHHHHHHHH------------TTSTTEEEHHHHHHHHHHTTTTTTTHHHHHHHHHHHHSSCSSEECHHHHHHHHHH
T ss_pred             hHHHHHHHHHhcc------------cCCCCcccHHHHHHHHHHHhcccCcHHHHHHHHHHHCCCCcCcCcHHHHHHHHHH
Confidence            6677777766543            6889999999999999887777777899999999999999999999999999987


Q ss_pred             hccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy2947         363 HSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLV  398 (441)
Q Consensus       363 ~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~  398 (441)
                      . +.....+++..+|+.+|.|+||.|+++||.++|.
T Consensus       112 ~-g~~~~~~e~~~l~~~~D~d~dG~I~~~EF~~~m~  146 (148)
T 2lmt_A          112 L-GEKVTDEEIDEMIREADFDGDGMINYEEFVWMIS  146 (148)
T ss_dssp             H-TCCCCHHHHHHHHHHHCCSCCSSEEHHHHHHHHT
T ss_pred             c-CccccHHHHHHHHHHhCCCCCCeEeHHHHHHHHh
Confidence            7 4556678999999999999999999999999884

>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A

Probab=99.46  E-value=2.9e-13  Score=111.17  Aligned_cols=135  Identities=33%  Similarity=0.545  Sum_probs=116.3

Q ss_pred             ccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHH----hCCCcccHHHHHHHHHhhcCCCCCHHH
Q psy2947         262 KTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLA----EKGGKLSFPDFLKVMHTHSKAEDIPKE  335 (441)
Q Consensus       262 ~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~~~~~~~~~  335 (441)
                      +.++.+++++|..+|.+  |.| +.+|+..+++.++..++..++..++.    +++|.|+++||..++..........+.
T Consensus         2 ~~~~~~l~~~F~~~D~d~~G~I-~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~   80 (143)
T 2obh_A            2 EEQKQEIREAFDLFDADGTGTI-DVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFGDFLTVMTQKMSEKDTKEE   80 (143)
T ss_dssp             HHHHHHHHHHHHTTCTTCCSEE-EGGGHHHHHHHTTCCCCHHHHHHHHHHHTTTCCSEEEHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCCcC-cHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeeeHHHHHHHHHHHhccccHHHH
Confidence            45678899999999986  888 89999999999999999999888775    578999999999988754322233567


Q ss_pred             HHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy2947         336 VVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLV  398 (441)
Q Consensus       336 ~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~  398 (441)
                      ++.+|+.||.|++|.|+.+||+.++... +.....+++..+|+.+|.|++|.|+++||.++|.
T Consensus        81 l~~~F~~~D~d~~G~I~~~el~~~l~~~-g~~~~~~~~~~~~~~~D~d~dG~I~~~eF~~~~~  142 (143)
T 2obh_A           81 ILKAFKLFDDDETGKISFKNLKRVAKEL-GENLTDEELQEMIDEADRDGDGEVSEQEFLRIMK  142 (143)
T ss_dssp             HHHHHHHHCTTCSSSBCHHHHHHHHHHT-TCCCCHHHHHHHHHHHCTTSSSSBCHHHHHHHHC
T ss_pred             HHHHHHHhCCCCCCcCcHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHc
Confidence            9999999999999999999999999876 3456678999999999999999999999999873

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.45  E-value=2.3e-13  Score=137.28  Aligned_cols=119  Identities=22%  Similarity=0.198  Sum_probs=94.0

Q ss_pred             CCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEccCCCCCccchhhcCCCCCCEEEccC
Q psy2947          82 TVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHG  161 (441)
Q Consensus        82 ~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~  161 (441)
                      .|+.|+|++|.|+.+|. |+.+++|+.|++++|.|+  .+|..++.+++|+.|+|++|+|+.+| .++.+++|+.|+|++
T Consensus       442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN  517 (567)
T ss_dssp             TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred             CceEEEecCCCCCCCcC-ccccccCcEeecCccccc--ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC
Confidence            58888888888888886 888888888999888887  88888888888888999888888888 788888888888888


Q ss_pred             CcCccCcccccccccc-cccccccchhHHH-HhhcccccCCchhh----hhhhhcccc
Q psy2947         162 NHNYFKSTFMWYHSDI-HARIRSTSTRDEV-LRKQKKLHQPSRLQ----DLAVQSVIA  213 (441)
Q Consensus       162 N~~~~~~~~~~~~~~~-p~~l~~l~~~~~~-l~~~~~~~~p~~l~----~l~~l~~l~  213 (441)
                      |.+..         .. |..+..++.+..+ +.+|.+..+|+.+.    .+++|+.|+
T Consensus       518 N~l~~---------~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          518 NRLQQ---------SAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             SCCCS---------SSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCCCC---------CCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            88522         22 6777778777777 88888877765433    355666653

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.45  E-value=1.9e-13  Score=129.76  Aligned_cols=149  Identities=15%  Similarity=0.214  Sum_probs=116.8

Q ss_pred             CCCCCcccEEeccCCCcC--cccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEE
Q psy2947          57 PQYFSHAFLLSLSYTPIG--RRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHL  134 (441)
Q Consensus        57 ~~~l~~L~~l~l~~n~i~--~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L  134 (441)
                      ...+++|+.|++++|.+.  ..+..+++|+.|++++|.++.++. +..+++|+.|++++|.++  .+|. +..+++|++|
T Consensus       173 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~--~~~~-~~~l~~L~~L  248 (347)
T 4fmz_A          173 IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKIT--DLSP-LANLSQLTWL  248 (347)
T ss_dssp             GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCC--CCGG-GTTCTTCCEE
T ss_pred             hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccC--CCcc-hhcCCCCCEE
Confidence            345789999999999553  226778899999999999987765 888999999999999997  6665 8889999999


Q ss_pred             EccCCCCCccchhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccC-Cchhhhhhhhccc
Q psy2947         135 YLDNNLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQ-PSRLQDLAVQSVI  212 (441)
Q Consensus       135 ~l~~n~l~~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~-p~~l~~l~~l~~l  212 (441)
                      ++++|.++.++ .+..+++|+.|++++|.+...           ..+..++.+..+ +++|.+... |..+..+++|+.+
T Consensus       249 ~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~-----------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  316 (347)
T 4fmz_A          249 EIGTNQISDIN-AVKDLTKLKMLNVGSNQISDI-----------SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL  316 (347)
T ss_dssp             ECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCC-----------GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEE
T ss_pred             ECCCCccCCCh-hHhcCCCcCEEEccCCccCCC-----------hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEE
Confidence            99999998875 577889999999999986432           234455555556 777777544 4567888889999


Q ss_pred             ccccccCCC
Q psy2947         213 ASKENFFEP  221 (441)
Q Consensus       213 ~l~~n~~~~  221 (441)
                      ++++|++..
T Consensus       317 ~L~~n~l~~  325 (347)
T 4fmz_A          317 FLSQNHITD  325 (347)
T ss_dssp             ECCSSSCCC
T ss_pred             EccCCcccc
Confidence            999887664

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.45  E-value=4.2e-14  Score=140.50  Aligned_cols=132  Identities=17%  Similarity=0.105  Sum_probs=93.4

Q ss_pred             CCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEccCCCCCcc-chhhc-CCCCCCEEE
Q psy2947          81 DTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDAL-PGFLL-SMPQLDTVY  158 (441)
Q Consensus        81 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~l-p~~~~-~l~~L~~L~  158 (441)
                      ++|+.|++++|.++.+|..  .+++|+.|++++|.++ +..|..++.+++|++|+|++|.|+.+ |..+. .+++|+.|+
T Consensus        99 ~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~  175 (487)
T 3oja_A           99 PSIETLHAANNNISRVSCS--RGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN  175 (487)
T ss_dssp             TTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCC-SGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred             CCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCC-CCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEe
Confidence            3444444444555444332  3577888888888887 55566778888889999998888764 55554 688889999


Q ss_pred             ccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCchhhhhhhhcccccccccCCCCCCCchh
Q psy2947         159 RHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSRLQDLAVQSVIASKENFFEPGLFPGPL  228 (441)
Q Consensus       159 l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~l~~l~~l~~l~l~~n~~~~~~~p~~~  228 (441)
                      |++|.+...          |. ...++.+..+ +++|.+..+|+.+..++.|+.|++++|.+..  +|..+
T Consensus       176 Ls~N~l~~~----------~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~--lp~~l  233 (487)
T 3oja_A          176 LQYNFIYDV----------KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL--IEKAL  233 (487)
T ss_dssp             CTTSCCCEE----------EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE--ECTTC
T ss_pred             cCCCccccc----------cc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc--cchhh
Confidence            998886432          11 2235555556 7888898888889999999999999998764  66554

>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A

Probab=99.44  E-value=4e-13  Score=104.92  Aligned_cols=100  Identities=19%  Similarity=0.256  Sum_probs=82.2

Q ss_pred             CcCHHHHHHHHH--hCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhc--cCCCChHH
Q psy2947         297 SPTIAELKKYLA--EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHS--KAEDIPKE  372 (441)
Q Consensus       297 ~~~~~~~~~~~~--~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~--~~~~~~~~  372 (441)
                      .++..++..++.  +++|.|+++||..++..   .....+.++.+|+.+|.|++|.|+.+||..++....  ......++
T Consensus         6 ~~t~~e~~~~~~~~d~~g~i~~~ef~~~~~~---~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~   82 (110)
T 1pva_A            6 LLKADDIKKALDAVKAEGSFNHKKFFALVGL---KAMSANDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAE   82 (110)
T ss_dssp             HSCHHHHHHHHHHTCSTTCCCHHHHHHHHTC---TTSCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTCCCCCHHH
T ss_pred             cCCHHHHHHHHHhcCCCCcCcHHHHHHHHcc---CcchHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhhcCCCCCHHH
Confidence            344555555554  37899999999999852   245678999999999999999999999999998763  34456789


Q ss_pred             HHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         373 VVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       373 ~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      ++.+|+.+|.+++|.|+++||.+++..
T Consensus        83 ~~~~~~~~d~~~dg~i~~~eF~~~~~~  109 (110)
T 1pva_A           83 TKAFLKAADKDGDGKIGIDEFETLVHE  109 (110)
T ss_dssp             HHHHHHHHCTTCSSSBCHHHHHHHHHC
T ss_pred             HHHHHHHhCCCCCCeEcHHHHHHHHHh
Confidence            999999999999999999999998863

>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A

Probab=99.44  E-value=3.3e-13  Score=105.21  Aligned_cols=99  Identities=15%  Similarity=0.265  Sum_probs=81.8

Q ss_pred             cCHHHHHHHHH--hCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhc--cCCCChHHH
Q psy2947         298 PTIAELKKYLA--EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHS--KAEDIPKEV  373 (441)
Q Consensus       298 ~~~~~~~~~~~--~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~--~~~~~~~~~  373 (441)
                      ++..++..++.  +++|.|+++||..++...   ....+.++.+|+.+|.|++|.|+.+||..++....  ......+++
T Consensus         6 ~t~~e~~~~~~~~d~~g~i~~~eF~~~~~~~---~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~   82 (109)
T 1rwy_A            6 LSAEDIKKAIGAFTAADSFDHKKFFQMVGLK---KKSADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKET   82 (109)
T ss_dssp             SCHHHHHHHHHTTCSTTCCCHHHHHHHHTGG---GSCHHHHHHHHHHHSTTCSSEECHHHHHTHHHHHCTTCCCCCHHHH
T ss_pred             CCHHHHHHHHHHcCCCCcEeHHHHHHHHhcC---cchHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHHhccCCCCCHHHH
Confidence            34445555544  378999999999998532   35678999999999999999999999999998873  344567889


Q ss_pred             HHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         374 VDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       374 ~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      +.+|+.+|.+++|.|+++||.+++..
T Consensus        83 ~~~~~~~D~~~dg~i~~~eF~~~~~~  108 (109)
T 1rwy_A           83 KTLMAAGDKDGDGKIGVEEFSTLVAE  108 (109)
T ss_dssp             HHHHHHHCTTCSSSEEHHHHHHHHHT
T ss_pred             HHHHHHHCCCCCCcCCHHHHHHHHHc
Confidence            99999999999999999999998863

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.44  E-value=5.4e-14  Score=128.14  Aligned_cols=144  Identities=18%  Similarity=0.164  Sum_probs=121.9

Q ss_pred             CCcccEEeccCCCcCc--ccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEcc
Q psy2947          60 FSHAFLLSLSYTPIGR--RIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLD  137 (441)
Q Consensus        60 l~~L~~l~l~~n~i~~--~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~  137 (441)
                      +.++..++++.|.+..  .+..+++|+.|++++|.++.+| .+..+++|+.|++++|+++  .+|. +..+++|++|+++
T Consensus        18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~--~~~~-l~~l~~L~~L~L~   93 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQIS--DLSP-LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCC--CCGG-GTTCSSCCEEECC
T ss_pred             HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccC--CChh-hccCCCCCEEECC
Confidence            5667778888886542  4567899999999999999998 7999999999999999998  6776 9999999999999


Q ss_pred             CCCCCccchhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCchhhhhhhhccccccc
Q psy2947         138 NNLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSRLQDLAVQSVIASKE  216 (441)
Q Consensus       138 ~n~l~~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~l~~l~~l~~l~l~~  216 (441)
                      +|+++.+|....  ++|+.|++++|.+...           ..+..++.+..+ +++|.+..+| .+..++.|+.|++++
T Consensus        94 ~N~l~~l~~~~~--~~L~~L~L~~N~l~~~-----------~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~  159 (263)
T 1xeu_A           94 RNRLKNLNGIPS--ACLSRLFLDNNELRDT-----------DSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHG  159 (263)
T ss_dssp             SSCCSCCTTCCC--SSCCEEECCSSCCSBS-----------GGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTT
T ss_pred             CCccCCcCcccc--CcccEEEccCCccCCC-----------hhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCC
Confidence            999999986433  8999999999997432           236666777777 8889998887 799999999999999


Q ss_pred             ccCCC
Q psy2947         217 NFFEP  221 (441)
Q Consensus       217 n~~~~  221 (441)
                      |.+..
T Consensus       160 N~i~~  164 (263)
T 1xeu_A          160 NEITN  164 (263)
T ss_dssp             SCCCB
T ss_pred             CcCcc
Confidence            98765

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.43  E-value=4.1e-13  Score=137.87  Aligned_cols=170  Identities=15%  Similarity=0.125  Sum_probs=131.9

Q ss_pred             CCCCcccEEeccCCC----c-CcccCCCCCCCEEEccCCCCCcCC-cCccCCCCCcEEEccCCcCCCCCCchhhhcCCCC
Q psy2947          58 QYFSHAFLLSLSYTP----I-GRRIFKCDTVEVLSLKSNSLTSLP-PDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNL  131 (441)
Q Consensus        58 ~~l~~L~~l~l~~n~----i-~~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L  131 (441)
                      ..+++|+.++++.+.    . +..+..+++++.++++.|.+..++ ..+..+++|+.|++++|.+..+.+|..+..+++|
T Consensus       417 ~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L  496 (635)
T 4g8a_A          417 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL  496 (635)
T ss_dssp             TTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred             cccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcccc
Confidence            346777888887762    1 234567888999999999998554 4488899999999999975423467778899999


Q ss_pred             CEEEccCCCCCcc-chhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccC-Cchhhhh-h
Q psy2947         132 THLYLDNNLLDAL-PGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQ-PSRLQDL-A  207 (441)
Q Consensus       132 ~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~-p~~l~~l-~  207 (441)
                      ++|+|++|+|+.+ |..|.++++|+.|+|++|++...         .|..+..++.+..+ +++|.+..+ |..+..+ +
T Consensus       497 ~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l---------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~  567 (635)
T 4g8a_A          497 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL---------DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS  567 (635)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBC---------CCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCT
T ss_pred             CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCC---------ChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhC
Confidence            9999999999877 47788999999999999986432         24567777777777 888988666 4567777 6


Q ss_pred             hhcccccccccCCCCCCCchhhhHHHhhh
Q psy2947         208 VQSVIASKENFFEPGLFPGPLVDYIAREY  236 (441)
Q Consensus       208 ~l~~l~l~~n~~~~~~~p~~~~~~l~~~~  236 (441)
                      +|+.+++++|+|.|.+--.++.+|+....
T Consensus       568 ~L~~L~L~~Np~~C~C~~~~~~~wl~~~~  596 (635)
T 4g8a_A          568 SLAFLNLTQNDFACTCEHQSFLQWIKDQR  596 (635)
T ss_dssp             TCCEEECTTCCBCCSGGGHHHHHHHHHTT
T ss_pred             cCCEEEeeCCCCcccCCcHHHHHHHHhCC
Confidence            89999999999998765566777776544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.43  E-value=7e-14  Score=131.11  Aligned_cols=131  Identities=16%  Similarity=0.103  Sum_probs=78.2

Q ss_pred             CCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEccCCCCCccc-hhh-cCCCCCCEEE
Q psy2947          81 DTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALP-GFL-LSMPQLDTVY  158 (441)
Q Consensus        81 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~lp-~~~-~~l~~L~~L~  158 (441)
                      ++|+.|++++|+++.++..  .+++|++|++++|.++ +..|..+..+++|++|++++|.++.++ ..+ ..+++|++|+
T Consensus        99 ~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~  175 (317)
T 3o53_A           99 PSIETLHAANNNISRVSCS--RGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN  175 (317)
T ss_dssp             TTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCC-SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred             CCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCC-CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEE
Confidence            4444444444555443322  2456777777777776 333335666777777777777776553 333 3567777777


Q ss_pred             ccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCchhhhhhhhcccccccccCCCCCCCch
Q psy2947         159 RHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSRLQDLAVQSVIASKENFFEPGLFPGP  227 (441)
Q Consensus       159 l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~l~~l~~l~~l~l~~n~~~~~~~p~~  227 (441)
                      +++|.+...          +. ...++.+..+ +++|.+..+|+.+..++.|+.+++++|.+..  +|..
T Consensus       176 L~~N~l~~~----------~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~--l~~~  232 (317)
T 3o53_A          176 LQYNFIYDV----------KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL--IEKA  232 (317)
T ss_dssp             CTTSCCCEE----------EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE--ECTT
T ss_pred             CCCCcCccc----------cc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccc--hhhH
Confidence            777775332          11 1124444445 6677777777777777888888888776653  5543

>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus} SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A

Probab=99.43  E-value=4.8e-13  Score=104.14  Aligned_cols=98  Identities=16%  Similarity=0.212  Sum_probs=80.6

Q ss_pred             cCHHHHHHHHH--hCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhc--cCCCChHHH
Q psy2947         298 PTIAELKKYLA--EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHS--KAEDIPKEV  373 (441)
Q Consensus       298 ~~~~~~~~~~~--~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~--~~~~~~~~~  373 (441)
                      ++..++..++.  +++|.|+++||..++...   ....+.++.+|+.+|.|++|.|+.+||..++....  ......+++
T Consensus         6 ~t~~e~~~~~~~~d~~g~i~~~eF~~~~~~~---~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~   82 (108)
T 1rro_A            6 LSAEDIAAALQECQDPDTFEPQKFFQTSGLS---KMSASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESET   82 (108)
T ss_dssp             SCHHHHHHHHHHTCSTTCCCHHHHHHHHSGG---GSCHHHHHHHHHHHCTTCSSEECTHHHHTGGGGTCTTSCCCCHHHH
T ss_pred             CCHHHHHHHHHHccCCCCcCHHHHHHHHhcC---cccHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHhhccCCCCHHHH
Confidence            44444444443  378999999999988532   34678899999999999999999999999998773  344567899


Q ss_pred             HHHHHHhCCCCCCcccHHHHHHHHH
Q psy2947         374 VDAFKAADTTKSGTVPAKYLKHVLV  398 (441)
Q Consensus       374 ~~~f~~~D~~~~G~is~~ef~~~l~  398 (441)
                      +.+|+.+|.+++|.|+++||..+++
T Consensus        83 ~~~~~~~D~~~dg~i~~~eF~~~~~  107 (108)
T 1rro_A           83 KSLMDAADNDGDGKIGADEFQEMVH  107 (108)
T ss_dssp             HHHHHHHCCSSSSSEEHHHHHHHHT
T ss_pred             HHHHHHhCCCCCCcCcHHHHHHHHc
Confidence            9999999999999999999999874

>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}

Probab=99.43  E-value=9.7e-13  Score=123.55  Aligned_cols=119  Identities=24%  Similarity=0.355  Sum_probs=96.7

Q ss_pred             chHHHHHhhhccccCCCccCHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhh
Q psy2947         264 PYLEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAA  343 (441)
Q Consensus       264 ~~~~l~~~f~~~d~~G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~  343 (441)
                      ...+++.++..+   |...+.+++..+++.++            .+++|.|+|+||+.++..........++++++|+.|
T Consensus       320 S~eELk~aLrsL---G~~~TeeEI~~Lf~~~D------------~DgDG~IdFeEFl~lms~~lk~~d~eeeLreAFk~f  384 (440)
T 3u0k_A          320 TTKELGTVMRSL---GQNPTEAELQDMINEVD------------ADGDGTIDFPEFLIMMARKMKDTDSEEEIREAFRVF  384 (440)
T ss_dssp             CHHHHHHHHHHT---TCCCCHHHHHHHHHHHC------------SSCSSSEEHHHHHHHHHTC------CHHHHHHHHHH
T ss_pred             CHHHHHHHHHHc---CCCCCHHHHHHHHHHhC------------CCCCCcCcHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence            355666666444   43337889999988876            789999999999999987666666778999999999


Q ss_pred             cCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy2947         344 DTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLV  398 (441)
Q Consensus       344 D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~  398 (441)
                      |.|++|.|+.+||++++..+ .....+++++.+|+.+|.|+||.|+++||.++|.
T Consensus       385 DkDgdG~IS~eELr~vL~~l-Ge~LSdeEIdeLfke~D~DgDGkIsyeEFvkmMt  438 (440)
T 3u0k_A          385 DKDGNGYISAAELRHVMTNL-GEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT  438 (440)
T ss_dssp             CTTCSSEECHHHHHHHHHHH-TCCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHC
T ss_pred             CCCCcCcCCHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHhC
Confidence            99999999999999999877 4556688999999999999999999999999884

>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}

Probab=99.43  E-value=2.2e-13  Score=103.98  Aligned_cols=65  Identities=22%  Similarity=0.359  Sum_probs=61.7

Q ss_pred             hHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         370 PKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       370 ~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      .++++.+|+.+|+|++|+|+.+||+.+++.+|..+++++++.+++.+|.|++|.|+|+||+++|.
T Consensus        35 ~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~~~D~d~dG~I~~~EF~~~m~   99 (100)
T 2lv7_A           35 LEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRLDMDGDGQVDFEEFVTLLG   99 (100)
T ss_dssp             HHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHHHHCSSCSSSBCHHHHHHHTC
T ss_pred             HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHCCCCCCeEeHHHHHHHhC
Confidence            35788999999999999999999999999999999999999999999999999999999999874

>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}

Probab=99.42  E-value=1.9e-13  Score=111.02  Aligned_cols=98  Identities=10%  Similarity=0.121  Sum_probs=67.9

Q ss_pred             HHHHHhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCC
Q psy2947         304 KKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTT  383 (441)
Q Consensus       304 ~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~  383 (441)
                      ..++.+++|.|+++||..++..........+.++.+|+.||.|++|.|+.+||..++..........++++.+|+.+|.|
T Consensus        10 ~~~D~d~~G~I~~~EF~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~e~~~~~~~~D~d   89 (135)
T 3h4s_E           10 LETTSTTKMETKYEDMLPVMAEKMDVEEFVSELCKGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQGMVREGDLD   89 (135)
T ss_dssp             ---------CCCC-----------CHHHHHHHHHHHHHHHSBTTTTBBCHHHHHHHGGGGTCCCCCHHHHHHHHHHHCSS
T ss_pred             HHHcCCCCCcEeHHHHHHHHHHHccccchHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCC
Confidence            34447899999999999998765443344678999999999999999999999999987732356688999999999999


Q ss_pred             CCCcccHHHHHHHHHHhC
Q psy2947         384 KSGTVPAKYLKHVLVNWG  401 (441)
Q Consensus       384 ~~G~is~~ef~~~l~~~~  401 (441)
                      ++|.|+++||.+++....
T Consensus        90 ~dG~I~~~EF~~~~~~~~  107 (135)
T 3h4s_E           90 GDGALNQTEFCVLMVRLS  107 (135)
T ss_dssp             CSSSBCHHHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHhC
Confidence            999999999999998753

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.42  E-value=1.1e-12  Score=133.37  Aligned_cols=34  Identities=12%  Similarity=0.169  Sum_probs=27.1

Q ss_pred             hHHH-HhhcccccCCchhhhhhhhcccccccccCC
Q psy2947         187 RDEV-LRKQKKLHQPSRLQDLAVQSVIASKENFFE  220 (441)
Q Consensus       187 ~~~~-l~~~~~~~~p~~l~~l~~l~~l~l~~n~~~  220 (441)
                      +..+ +.+|.+..+|..+..+++|+.|++++|++.
T Consensus       263 L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~  297 (622)
T 3g06_A          263 LLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS  297 (622)
T ss_dssp             CCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCC
T ss_pred             CcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCC
Confidence            3334 677888888888888999999999988765

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.41  E-value=5.4e-13  Score=141.61  Aligned_cols=154  Identities=17%  Similarity=0.124  Sum_probs=119.5

Q ss_pred             CCCCCcccEEeccCC----Cc-CcccCCCCCCCEEEccCCCCCcC-CcCccCCCCCcEEEccCCcCCCCCCchh--hhcC
Q psy2947          57 PQYFSHAFLLSLSYT----PI-GRRIFKCDTVEVLSLKSNSLTSL-PPDIGRLTNLRVLCLTDNCLQNASIPFT--LTFC  128 (441)
Q Consensus        57 ~~~l~~L~~l~l~~n----~i-~~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~~~~p~~--~~~l  128 (441)
                      +..+++|+.|+|++|    .| |..+.++++|++|+|++|.++.+ |..|..+++|++|++++|.++ +.+|..  +..+
T Consensus        44 ~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~~~L  122 (844)
T 3j0a_A           44 FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLS-DAVLKDGYFRNL  122 (844)
T ss_dssp             CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCS-SCCSTTCCCSSC
T ss_pred             CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCC-cccccCcccccc
Confidence            456899999999999    33 56788999999999999999965 677999999999999999998 556665  8999


Q ss_pred             CCCCEEEccCCCCCccc--hhhcCCCCCCEEEccCCcCccCccccccccccccccccc--chhHHH-Hhhccc-ccCCch
Q psy2947         129 KNLTHLYLDNNLLDALP--GFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRST--STRDEV-LRKQKK-LHQPSR  202 (441)
Q Consensus       129 ~~L~~L~l~~n~l~~lp--~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l--~~~~~~-l~~~~~-~~~p~~  202 (441)
                      ++|++|+|++|.+..++  ..|+++++|+.|++++|.+...         .+..+..+  +.+..+ +..|.+ ...|..
T Consensus       123 ~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~---------~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~  193 (844)
T 3j0a_A          123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV---------CEHELEPLQGKTLSFFSLAANSLYSRVSVD  193 (844)
T ss_dssp             SSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC---------CSGGGHHHHHCSSCCCEECCSBSCCCCCCC
T ss_pred             CCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee---------CHHHcccccCCccceEECCCCccccccccc
Confidence            99999999999997663  5799999999999999996432         24444443  334444 555555 334544


Q ss_pred             hhhhhh------hcccccccccCC
Q psy2947         203 LQDLAV------QSVIASKENFFE  220 (441)
Q Consensus       203 l~~l~~------l~~l~l~~n~~~  220 (441)
                      +..+..      |+.+++++|.+.
T Consensus       194 ~~~~~~~~~~~~L~~L~Ls~n~l~  217 (844)
T 3j0a_A          194 WGKCMNPFRNMVLEILDVSGNGWT  217 (844)
T ss_dssp             CCSSSCTTTTCCBSEEBCSSCCSS
T ss_pred             hhhcCCccccCceeEEecCCCcCc
Confidence            444443      888889888654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.41  E-value=1.1e-12  Score=110.99  Aligned_cols=119  Identities=26%  Similarity=0.265  Sum_probs=95.0

Q ss_pred             CCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEccCCCCCccch-hhcCCCCCCEEEcc
Q psy2947          82 TVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPG-FLLSMPQLDTVYRH  160 (441)
Q Consensus        82 ~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~l~  160 (441)
                      ..+.+++++|.++.+|..+.  ++|+.|++++|.|+ +..|..+..+++|++|+|++|+|+.+|. .|..+++|++|+|+
T Consensus        10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCC-ccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            35899999999999998874  89999999999998 4557778999999999999999999984 56899999999999


Q ss_pred             CCcCccCcccccccccccccccccchhHHHHhhcccccCCc-hhhhhhhhcccccccccCCCCCC-CchhhhHHHhh
Q psy2947         161 GNHNYFKSTFMWYHSDIHARIRSTSTRDEVLRKQKKLHQPS-RLQDLAVQSVIASKENFFEPGLF-PGPLVDYIARE  235 (441)
Q Consensus       161 ~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~l~~~~~~~~p~-~l~~l~~l~~l~l~~n~~~~~~~-p~~~~~~l~~~  235 (441)
                      +|++.                                .+|+ .+..+++|+.|++++|++.+..- -..+..|+...
T Consensus        87 ~N~l~--------------------------------~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~~  131 (170)
T 3g39_A           87 DNQLK--------------------------------SIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQH  131 (170)
T ss_dssp             SSCCC--------------------------------CCCTTTTTTCTTCCEEECCSSCBCTTBGGGHHHHHHHHHC
T ss_pred             CCccC--------------------------------EeCHHHhcCCCCCCEEEeCCCCCCCCchhHHHHHHHHHhC
Confidence            99952                                2332 46677888999999999886421 12344455443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.39  E-value=1.6e-12  Score=123.42  Aligned_cols=100  Identities=21%  Similarity=0.196  Sum_probs=54.0

Q ss_pred             CCcccEEeccCCCc---CcccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEc
Q psy2947          60 FSHAFLLSLSYTPI---GRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL  136 (441)
Q Consensus        60 l~~L~~l~l~~n~i---~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l  136 (441)
                      +++|+.|++++|.+   +. +..+++|++|++++|.++.+| .+..+++|++|++++|.++  .+|. +..+++|++|++
T Consensus        65 ~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~--~~~~-~~~l~~L~~L~l  139 (347)
T 4fmz_A           65 LTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNIS--DISP-LANLTKMYSLNL  139 (347)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCC--CCGG-GTTCTTCCEEEC
T ss_pred             cCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCccc--Cchh-hccCCceeEEEC
Confidence            55566666666532   22 455566666666666655543 3555666666666666655  4443 555555566666


Q ss_pred             cCCCCCccchhhcCCCCCCEEEccCCcC
Q psy2947         137 DNNLLDALPGFLLSMPQLDTVYRHGNHN  164 (441)
Q Consensus       137 ~~n~l~~lp~~~~~l~~L~~L~l~~N~~  164 (441)
                      ++|.....+..+..+++|+.|++++|.+
T Consensus       140 ~~n~~~~~~~~~~~l~~L~~L~l~~~~~  167 (347)
T 4fmz_A          140 GANHNLSDLSPLSNMTGLNYLTVTESKV  167 (347)
T ss_dssp             TTCTTCCCCGGGTTCTTCCEEECCSSCC
T ss_pred             CCCCCcccccchhhCCCCcEEEecCCCc
Confidence            5553322222355555555555555554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.39  E-value=2.1e-12  Score=109.72  Aligned_cols=104  Identities=24%  Similarity=0.314  Sum_probs=88.8

Q ss_pred             CCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEccCCCCCccch-hhcCCCCCCEEEccC
Q psy2947          83 VEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPG-FLLSMPQLDTVYRHG  161 (441)
Q Consensus        83 L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~l~~  161 (441)
                      -+.+++++|+++.+|..+.  ++|+.|++++|+|+ +..|..+..+++|++|+|++|+|+.+|. .|..+++|+.|+|++
T Consensus        14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCcc-ccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            3789999999999999875  89999999999998 5557788999999999999999999985 468999999999999


Q ss_pred             CcCccCcccccccccccccccccchhHHHHhhcccccCCc-hhhhhhhhcccccccccCCC
Q psy2947         162 NHNYFKSTFMWYHSDIHARIRSTSTRDEVLRKQKKLHQPS-RLQDLAVQSVIASKENFFEP  221 (441)
Q Consensus       162 N~~~~~~~~~~~~~~~p~~l~~l~~~~~~l~~~~~~~~p~-~l~~l~~l~~l~l~~n~~~~  221 (441)
                      |++.                                .+|+ .+..+++|+.+++++|++.+
T Consensus        91 N~l~--------------------------------~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           91 NHLK--------------------------------SIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             SCCC--------------------------------CCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             Cccc--------------------------------eeCHHHhccccCCCEEEeCCCCccc
Confidence            9952                                2332 36677888888999998876

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.39  E-value=1.1e-12  Score=129.13  Aligned_cols=149  Identities=17%  Similarity=0.137  Sum_probs=78.7

Q ss_pred             CCcccEEeccCCCcCc-ccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEccC
Q psy2947          60 FSHAFLLSLSYTPIGR-RIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDN  138 (441)
Q Consensus        60 l~~L~~l~l~~n~i~~-~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~  138 (441)
                      +++|+.|++++|.+.. .+..+++|++|++++|.++.+|  ++.+++|++|++++|.++  .+|  ++.+++|++|++++
T Consensus        63 l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~--~l~--~~~l~~L~~L~l~~  136 (457)
T 3bz5_A           63 LTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLT--KLD--VSQNPLLTYLNCAR  136 (457)
T ss_dssp             CTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCS--CCC--CTTCTTCCEEECTT
T ss_pred             cCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCC--eec--CCCCCcCCEEECCC
Confidence            4556666666663321 1455556666666666666553  555666666666666665  343  55556666666666


Q ss_pred             CCCCccchhhcCCCCCCEEEccCCcCccCccccc-------------ccccccccccccchhHHH-HhhcccccCCchhh
Q psy2947         139 NLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMW-------------YHSDIHARIRSTSTRDEV-LRKQKKLHQPSRLQ  204 (441)
Q Consensus       139 n~l~~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~-------------~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~l~  204 (441)
                      |+++.++  ++.+++|+.|++++|+....-.+..             + ..+|  +..++.+..+ +.+|.+..++  +.
T Consensus       137 N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l-~~l~--l~~l~~L~~L~l~~N~l~~~~--l~  209 (457)
T 3bz5_A          137 NTLTEID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKI-TELD--VSQNKLLNRLNCDTNNITKLD--LN  209 (457)
T ss_dssp             SCCSCCC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCC-CCCC--CTTCTTCCEEECCSSCCSCCC--CT
T ss_pred             Cccceec--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCcc-ceec--cccCCCCCEEECcCCcCCeec--cc
Confidence            6655553  4445555555555553110000000             0 1122  3344444444 5566665553  66


Q ss_pred             hhhhhcccccccccCCC
Q psy2947         205 DLAVQSVIASKENFFEP  221 (441)
Q Consensus       205 ~l~~l~~l~l~~n~~~~  221 (441)
                      .++.|+.|++++|.+..
T Consensus       210 ~l~~L~~L~Ls~N~l~~  226 (457)
T 3bz5_A          210 QNIQLTFLDCSSNKLTE  226 (457)
T ss_dssp             TCTTCSEEECCSSCCSC
T ss_pred             cCCCCCEEECcCCcccc
Confidence            77778888888777654

>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...

Probab=99.39  E-value=1.2e-12  Score=108.05  Aligned_cols=137  Identities=33%  Similarity=0.543  Sum_probs=118.5

Q ss_pred             ecccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHH----hCCCcccHHHHHHHHHhhcCCCCCH
Q psy2947         260 TFKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLA----EKGGKLSFPDFLKVMHTHSKAEDIP  333 (441)
Q Consensus       260 l~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~~~~~~~  333 (441)
                      +++.++.++++.|..+|.+  |.| +..++..+++.++..++..++..++.    +++|.|+++||..++..........
T Consensus         4 l~~~~~~~l~~~F~~~D~d~~G~i-~~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~   82 (148)
T 1exr_A            4 LTEEQIAEFKEAFALFDKDGDGTI-TTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKEQDSE   82 (148)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCSSEE-CHHHHHHHHHHHTCCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCcC-cHHHHHHHHHHcCCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHhcccCCCcH
Confidence            5677889999999999986  788 89999999999999999888887764    6889999999999887543322345


Q ss_pred             HHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy2947         334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLV  398 (441)
Q Consensus       334 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~  398 (441)
                      +.+..+|+.+|.|++|.|+.+||+.++... +.....+++..+|+.+|.|++|.|+++||.++|.
T Consensus        83 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~~-g~~~~~~~~~~~~~~~d~d~dg~i~~~eF~~~~~  146 (148)
T 1exr_A           83 EELIEAFKVFDRDGNGLISAAELRHVMTNL-GEKLTDDEVDEMIREADIDGDGHINYEEFVRMMV  146 (148)
T ss_dssp             HHHHHHHHHHSTTCSSCBCHHHHHHHHHHT-TCCCCHHHHHHHHHHHCSSSSSSBCHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCcCCHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHc
Confidence            678999999999999999999999999876 4456678999999999999999999999999885

>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5

Probab=99.39  E-value=1.9e-13  Score=101.84  Aligned_cols=86  Identities=26%  Similarity=0.384  Sum_probs=70.9

Q ss_pred             CCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcee
Q psy2947         346 TKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVR  425 (441)
Q Consensus       346 d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~  425 (441)
                      |++|.|+++|  .++.... .....+.++.+|+.+|.+++|.|+.+||+.+++.+|.++++++++.+++.+|.+++|.|+
T Consensus         1 ~~~G~i~~~e--~~~~~~l-~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~   77 (87)
T 1s6j_A            1 HSSGHIDDDD--KHMAERL-SEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTID   77 (87)
T ss_dssp             CCSSSSSSHH--HHSSSSS-CSSSTTTTTTHHHHHCTTCSSCEEHHHHHHHHHTTTSSCCHHHHHHHHHHHCTTCSSEEC
T ss_pred             CCCCccCccH--HHHHHHC-CHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCc
Confidence            4678888888  2222221 122235688899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q psy2947         426 YEDFVKIAC  434 (441)
Q Consensus       426 ~~ef~~~l~  434 (441)
                      |+||+.++.
T Consensus        78 ~~eF~~~~~   86 (87)
T 1s6j_A           78 YGEFIAATV   86 (87)
T ss_dssp             HHHHTTCCC
T ss_pred             HHHHHHHHh
Confidence            999987653

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.39  E-value=1.1e-12  Score=129.72  Aligned_cols=125  Identities=22%  Similarity=0.223  Sum_probs=56.0

Q ss_pred             CCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEccCCCCCccchhhcCCCCCCEEE
Q psy2947          79 KCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVY  158 (441)
Q Consensus        79 ~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~  158 (441)
                      .+++|+.|++++|.++.+++ +..+++|+.|++++|.++  .+|. +..+++|+.|++++|+++.++. +..+++|+.|+
T Consensus       241 ~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~--~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~  315 (466)
T 1o6v_A          241 SLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQIS--NISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLT  315 (466)
T ss_dssp             GCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCC--CCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEE
T ss_pred             cCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccC--cccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEE
Confidence            34444444444444443332 444444444444444444  2332 4444444444444444444433 34444444444


Q ss_pred             ccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCchhhhhhhhcccccccccCC
Q psy2947         159 RHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSRLQDLAVQSVIASKENFFE  220 (441)
Q Consensus       159 l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~l~~l~~l~~l~l~~n~~~  220 (441)
                      +++|++....         |  +..++.+..+ +.+|.+..++ .+..++.|+.+++++|.+.
T Consensus       316 L~~n~l~~~~---------~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~  366 (466)
T 1o6v_A          316 LYFNNISDIS---------P--VSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQIS  366 (466)
T ss_dssp             CCSSCCSCCG---------G--GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCC
T ss_pred             CcCCcCCCch---------h--hccCccCCEeECCCCccCCch-hhccCCCCCEEeCCCCccC
Confidence            4444432211         1  2333333334 4455554443 4555566666666655543

>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A

Probab=99.39  E-value=2.6e-12  Score=107.44  Aligned_cols=119  Identities=18%  Similarity=0.239  Sum_probs=98.1

Q ss_pred             hHHHHHhhhccccCCCccCHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhc
Q psy2947         265 YLEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAAD  344 (441)
Q Consensus       265 ~~~l~~~f~~~d~~G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D  344 (441)
                      ..++..++..+   |...+..++..++..++            .+++|.|+++||..++..........+.+..+|+.+|
T Consensus        42 ~~e~~~~l~~~---~~~~~~~~~~~l~~~~d------------~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D  106 (161)
T 3fwb_A           42 YHELKVAMKAL---GFELPKREILDLIDEYD------------SEGRHLMKYDDFYIVMGEKILKRDPLDEIKRAFQLFD  106 (161)
T ss_dssp             HHHHHHHHHHT---TCCCCHHHHHHHHHHHC------------TTSSSCEEHHHHHHHHHHHHHTCCHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHc---CCCCCHHHHHHHHHHhC------------cCCCCeEeHHHHHHHHHHHHhcCCcHHHHHHHHHHHc
Confidence            44455555443   33336788888888766            6789999999999999876555566788999999999


Q ss_pred             CCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         345 TTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       345 ~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      .|++|.|+.+||..++... ......+++..+|+.+|.+++|.|+++||.+++..
T Consensus       107 ~d~~G~i~~~el~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~  160 (161)
T 3fwb_A          107 DDHTGKISIKNLRRVAKEL-GETLTDEELRAMIEEFDLDGDGEINENEFIAICTD  160 (161)
T ss_dssp             TTCSSEECHHHHHHHHHHT-TCCCCHHHHHHHHHTTCSSSSSSEEHHHHHHHHHH
T ss_pred             CCCCCeEeHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence            9999999999999999877 44556789999999999999999999999999864

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.39  E-value=1.5e-12  Score=132.34  Aligned_cols=56  Identities=25%  Similarity=0.119  Sum_probs=25.9

Q ss_pred             CCCcccEEeccCCCcCcccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCC
Q psy2947          59 YFSHAFLLSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQ  117 (441)
Q Consensus        59 ~l~~L~~l~l~~n~i~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~  117 (441)
                      .+++|+.|+|++|.|......+++|++|+|++|.++.+|.   .+++|+.|++++|+++
T Consensus        79 ~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~  134 (622)
T 3g06_A           79 LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLT  134 (622)
T ss_dssp             CCTTCCEEEECSCCCSCCCCCCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSCCS
T ss_pred             cCCCCCEEEcCCCcCCcCCCCCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCCCC
Confidence            4555666666655332211144555555555555555444   2333444444444443

>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}

Probab=99.38  E-value=5.8e-13  Score=113.42  Aligned_cols=118  Identities=20%  Similarity=0.335  Sum_probs=98.4

Q ss_pred             hHHHHHhhhccccCCCccCHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhc
Q psy2947         265 YLEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAAD  344 (441)
Q Consensus       265 ~~~l~~~f~~~d~~G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D  344 (441)
                      ..++..++..+   |..++..++..++..++            .+++|.|+++||..++..........+.++.+|+.||
T Consensus        30 ~~El~~~l~~l---g~~~~~~~~~~~~~~~d------------~d~~~~i~~~ef~~~~~~~~~~~~~~~~l~~aF~~fD   94 (176)
T 2lhi_A           30 SSELATVMRSL---GLSPSEAEVNDLMNEID------------VDGNHQIEFSEFLALMSRQLKSNDSEQELLEAFKVFD   94 (176)
T ss_dssp             HHHHHHHHHHH---TCCCCHHHHHHHHTTTC------------SSCSSSBCTTHHHHHHTSSCCSSHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHc---CCChhHHHHHHHHHHhC------------cCCCccchHHHHHHHHHHhcccCCcHHHHHHHHHHhC
Confidence            44555555433   44347788888888776            6889999999999998866555556788999999999


Q ss_pred             CCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         345 TTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       345 ~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      .|++|+|+.+||+.++... .....+++++.+|+.+| |+||.|+++||.++|+.
T Consensus        95 ~d~~G~I~~~el~~~l~~~-g~~~~~~ei~~l~~~~d-d~dG~I~~~EF~~~m~k  147 (176)
T 2lhi_A           95 KNGDGLISAAELKHVLTSI-GEKLTDAEVDDMLREVS-DGSGEINIQQFAALLSK  147 (176)
T ss_dssp             SSCSSSBCHHHHHHHHHTT-TCCCCHHHHHHHHHHHH-TTSSCBCTTHHHHHHTC
T ss_pred             CCCCCcCcHHHHHHHHHHc-CcccchHHHHHHHHhhc-CCCCeEeHHHHHHHHHh
Confidence            9999999999999999876 45666889999999999 99999999999999975

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.38  E-value=1.1e-12  Score=129.15  Aligned_cols=150  Identities=19%  Similarity=0.123  Sum_probs=117.0

Q ss_pred             CCCcccEEeccCCCcC--cccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEc
Q psy2947          59 YFSHAFLLSLSYTPIG--RRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL  136 (441)
Q Consensus        59 ~l~~L~~l~l~~n~i~--~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l  136 (441)
                      .+++|+.|++++|.+.  +.+..+++|++|++++|+++.+|  ++.+++|++|++++|.++  .+|  ++.+++|++|++
T Consensus        40 ~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~--~~~--~~~l~~L~~L~L  113 (457)
T 3bz5_A           40 QLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLT--NLD--VTPLTKLTYLNC  113 (457)
T ss_dssp             HHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCS--CCC--CTTCTTCCEEEC
T ss_pred             HcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCc--eee--cCCCCcCCEEEC
Confidence            3789999999999543  26788999999999999999986  899999999999999998  565  889999999999


Q ss_pred             cCCCCCccchhhcCCCCCCEEEccCCcCccCccccc-------------ccccccccccccchhHHH-HhhcccccCCch
Q psy2947         137 DNNLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMW-------------YHSDIHARIRSTSTRDEV-LRKQKKLHQPSR  202 (441)
Q Consensus       137 ~~n~l~~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~-------------~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~  202 (441)
                      ++|+++.+|  ++.+++|+.|++++|++.... +..             ..+.+  .+..++.+..+ +.+|.+..+|  
T Consensus       114 ~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~-l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--  186 (457)
T 3bz5_A          114 DTNKLTKLD--VSQNPLLTYLNCARNTLTEID-VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--  186 (457)
T ss_dssp             CSSCCSCCC--CTTCTTCCEEECTTSCCSCCC-CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--
T ss_pred             CCCcCCeec--CCCCCcCCEEECCCCccceec-cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--
Confidence            999999887  789999999999999975532 111             01111  23444444445 6667776666  


Q ss_pred             hhhhhhhcccccccccCCC
Q psy2947         203 LQDLAVQSVIASKENFFEP  221 (441)
Q Consensus       203 l~~l~~l~~l~l~~n~~~~  221 (441)
                      +..++.|+.+++++|.+..
T Consensus       187 l~~l~~L~~L~l~~N~l~~  205 (457)
T 3bz5_A          187 VSQNKLLNRLNCDTNNITK  205 (457)
T ss_dssp             CTTCTTCCEEECCSSCCSC
T ss_pred             cccCCCCCEEECcCCcCCe
Confidence            6677777777777776654

>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5

Probab=99.38  E-value=3e-12  Score=108.76  Aligned_cols=102  Identities=18%  Similarity=0.173  Sum_probs=83.8

Q ss_pred             HHHHHHHHHhhcCCCCCcccHHHHHH----HHHhhccCCCChHHHH-----------HHHHHhCCCCCCcccHHHHHHHH
Q psy2947         333 PKEVVDAFKAADTTKSGKLSFPDFLK----VMHTHSKAEDIPKEVV-----------DAFKAADTTKSGTVPAKYLKHVL  397 (441)
Q Consensus       333 ~~~~~~~f~~~D~d~~g~i~~~ef~~----~~~~~~~~~~~~~~~~-----------~~f~~~D~~~~G~is~~ef~~~l  397 (441)
                      ..+++.+|+.+|.|++|.|+.+||..    ++... +.....+++.           .+|+.+|.+++|.|+++||..++
T Consensus         6 ~~~l~~~F~~~D~d~~G~i~~~el~~~~~~~l~~~-g~~~~~~~~~~l~~~~~~~~~~lf~~~D~d~dg~i~~~Ef~~~~   84 (176)
T 1nya_A            6 SDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAF-GKDAGAAEVQTLKNAFGGLFDYLAKEAGVGSDGSLTEEQFIRVT   84 (176)
T ss_dssp             HHHHHHHHHHCCSSCCSSBCSHHHHHHHHHHHHHT-SSCSSSHHHHHHHHHHHHHHHHHHHHHTSCTTCCBCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHc-CCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHH
Confidence            35688999999999999999999999    45544 3333344444           89999999999999999999999


Q ss_pred             HHhCCCCC--------HHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         398 VNWGEGLS--------SKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       398 ~~~~~~l~--------~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      ........        .+.+..+|+.+|.|++|.|+++||..++..
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~  130 (176)
T 1nya_A           85 ENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADEFAAWLTA  130 (176)
T ss_dssp             HHHHSSSCHHHHHHHHHHHHHHHHHHTCSSCCSEEEHHHHHHHHHH
T ss_pred             HHHhcCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Confidence            88654444        366899999999999999999999988753

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.38  E-value=1.2e-12  Score=129.52  Aligned_cols=147  Identities=18%  Similarity=0.211  Sum_probs=123.1

Q ss_pred             CCCCcccEEeccCCCcC--cccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEE
Q psy2947          58 QYFSHAFLLSLSYTPIG--RRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLY  135 (441)
Q Consensus        58 ~~l~~L~~l~l~~n~i~--~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~  135 (441)
                      ..+++|+.|++++|.+.  ..+..+++|+.|++++|.++.+|+ +..+++|+.|++++|+++  .++. +..+++|+.|+
T Consensus       240 ~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~--~~~~-~~~l~~L~~L~  315 (466)
T 1o6v_A          240 ASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLE--DISP-ISNLKNLTYLT  315 (466)
T ss_dssp             GGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCS--CCGG-GGGCTTCSEEE
T ss_pred             hcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCccc--Cchh-hcCCCCCCEEE
Confidence            35778888898888543  237789999999999999998876 889999999999999998  5654 88999999999


Q ss_pred             ccCCCCCccchhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCchhhhhhhhccccc
Q psy2947         136 LDNNLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSRLQDLAVQSVIAS  214 (441)
Q Consensus       136 l~~n~l~~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~l~~l~~l~~l~l  214 (441)
                      +++|+++.++. +..+++|+.|++++|++...           ..+..++.+..+ +.+|.+...++ +..++.|+.+++
T Consensus       316 L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-----------~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l  382 (466)
T 1o6v_A          316 LYFNNISDISP-VSSLTKLQRLFFYNNKVSDV-----------SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGL  382 (466)
T ss_dssp             CCSSCCSCCGG-GGGCTTCCEEECCSSCCCCC-----------GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEEC
T ss_pred             CcCCcCCCchh-hccCccCCEeECCCCccCCc-----------hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEec
Confidence            99999988765 78899999999999996432           245566666666 78888877776 899999999999


Q ss_pred             ccccCCC
Q psy2947         215 KENFFEP  221 (441)
Q Consensus       215 ~~n~~~~  221 (441)
                      ++|++..
T Consensus       383 ~~n~~~~  389 (466)
T 1o6v_A          383 NDQAWTN  389 (466)
T ss_dssp             CCEEEEC
T ss_pred             cCCcccC
Confidence            9998875

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.38  E-value=1.3e-12  Score=110.49  Aligned_cols=106  Identities=25%  Similarity=0.190  Sum_probs=93.7

Q ss_pred             CCCCcccEEeccCCCcC--cccCCCCCCCEEEccCCCCCc-CCcCccCCCCCcEEEccCCcCCCCCCc--hhhhcCCCCC
Q psy2947          58 QYFSHAFLLSLSYTPIG--RRIFKCDTVEVLSLKSNSLTS-LPPDIGRLTNLRVLCLTDNCLQNASIP--FTLTFCKNLT  132 (441)
Q Consensus        58 ~~l~~L~~l~l~~n~i~--~~~~~l~~L~~L~l~~n~l~~-lp~~~~~l~~L~~L~l~~n~l~~~~~p--~~~~~l~~L~  132 (441)
                      ..+++|+.|++++|.+.  ..+..+++|++|+|++|+++. +|..+..+++|+.|++++|.++  .+|  ..+..+++|+
T Consensus        46 ~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~l~~l~~L~  123 (168)
T 2ell_A           46 AEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK--DISTLEPLKKLECLK  123 (168)
T ss_dssp             GGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCC--SSGGGGGGSSCSCCC
T ss_pred             HhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccC--cchhHHHHhcCCCCC
Confidence            34789999999999554  567789999999999999997 6666778999999999999998  665  6789999999


Q ss_pred             EEEccCCCCCccch----hhcCCCCCCEEEccCCcCc
Q psy2947         133 HLYLDNNLLDALPG----FLLSMPQLDTVYRHGNHNY  165 (441)
Q Consensus       133 ~L~l~~n~l~~lp~----~~~~l~~L~~L~l~~N~~~  165 (441)
                      +|++++|.++.+|.    .+..+++|+.|++++|.+.
T Consensus       124 ~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          124 SLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             EEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             EEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            99999999998886    7889999999999999863

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.38  E-value=2.1e-12  Score=127.02  Aligned_cols=103  Identities=22%  Similarity=0.343  Sum_probs=72.8

Q ss_pred             CCCCCCcccEEeccCCCcCcccCCC-CCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEE
Q psy2947          56 IPQYFSHAFLLSLSYTPIGRRIFKC-DTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHL  134 (441)
Q Consensus        56 ~~~~l~~L~~l~l~~n~i~~~~~~l-~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L  134 (441)
                      +|..+++|+.|++++|.+.. +..+ ++|++|++++|+++.+| .|+.+++|++|++++|+++  .+|..+   .+|++|
T Consensus       106 lp~~~~~L~~L~l~~n~l~~-l~~~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~--~lp~~~---~~L~~L  178 (454)
T 1jl5_A          106 LPELPQSLKSLLVDNNNLKA-LSDLPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLK--KLPDLP---PSLEFI  178 (454)
T ss_dssp             CCCCCTTCCEEECCSSCCSC-CCSCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCS--CCCCCC---TTCCEE
T ss_pred             cccccCCCcEEECCCCccCc-ccCCCCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCc--ccCCCc---ccccEE
Confidence            33445667777777775432 2222 57888888888888777 5888888888888888887  566533   478888


Q ss_pred             EccCCCCCccchhhcCCCCCCEEEccCCcCcc
Q psy2947         135 YLDNNLLDALPGFLLSMPQLDTVYRHGNHNYF  166 (441)
Q Consensus       135 ~l~~n~l~~lp~~~~~l~~L~~L~l~~N~~~~  166 (441)
                      ++++|+++.+| .++.+++|+.|++++|.+..
T Consensus       179 ~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~  209 (454)
T 1jl5_A          179 AAGNNQLEELP-ELQNLPFLTAIYADNNSLKK  209 (454)
T ss_dssp             ECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS
T ss_pred             ECcCCcCCcCc-cccCCCCCCEEECCCCcCCc
Confidence            88888887777 47778888888888887643

>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A

Probab=99.38  E-value=2.8e-12  Score=106.93  Aligned_cols=101  Identities=14%  Similarity=0.154  Sum_probs=88.2

Q ss_pred             HHHHHHHHhhc-CCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCC-----CCHH
Q psy2947         334 KEVVDAFKAAD-TTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEG-----LSSK  407 (441)
Q Consensus       334 ~~~~~~f~~~D-~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~-----l~~~  407 (441)
                      ..++.+|+.+| .|++|.|+.+||..++..+ ........+..+|+.+|.+++|.|+++||..++......     ...+
T Consensus        13 ~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~-~~~~~~~~~~~l~~~~D~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~   91 (158)
T 2jnf_A           13 KLLETAFRDFETPEGSGRVSTDQIGIILEVL-GIQQTKSTIRQLIDEFDPFGNGDIDFDSFKIIGARFLGEEVNPEQMQQ   91 (158)
T ss_dssp             HHHHHHHHHSBCSSSCSSEEHHHHHHHHHHT-TCSCSHHHHHHHHHHHCTTCCSEECHHHHHHHHHHHCCCCCCTTTTSS
T ss_pred             HHHHHHHHHhCCCCCCCcCcHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhccccchhhHHH
Confidence            45788999999 9999999999999999886 334557889999999999999999999999999875432     4566


Q ss_pred             HHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         408 EVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       408 ~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      .+..+|+.+|.|++|.|+.+||..++..
T Consensus        92 ~~~~~F~~~D~d~~G~I~~~el~~~l~~  119 (158)
T 2jnf_A           92 ELREAFRLYDKEGNGYISTDVMREILAE  119 (158)
T ss_dssp             THHHHHHHHCSSSSSSEEHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCeEcHHHHHHHHHH
Confidence            7899999999999999999999998853

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=99.38  E-value=7.4e-13  Score=137.02  Aligned_cols=120  Identities=13%  Similarity=0.228  Sum_probs=87.1

Q ss_pred             HhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcC-------CCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHh
Q psy2947         308 AEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADT-------TKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAA  380 (441)
Q Consensus       308 ~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~-------d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~  380 (441)
                      .+++|+|+.+|+..++..      ..+++..+++.+|.       +++|.|+++||..++..+.    .+++++.+|+.|
T Consensus       159 ~d~dG~Is~~EL~~~l~~------~~~ev~~li~~~d~~~~~~D~d~~g~idf~EF~~~~~~l~----~r~el~~aF~~f  228 (799)
T 2zkm_X          159 LNSEGKIPVKNFFQMFPA------DRKRVEAALSACHLPKGKNDAINPEDFPEPVYKSFLMSLC----PRPEIDEIFTSY  228 (799)
T ss_dssp             CCTTSCEEHHHHHHHSCS------CHHHHHHHHHHTTCCCCTTCEECGGGCCHHHHHHHHHHHS----CCHHHHTTCC--
T ss_pred             CCCCCeECHHHHHHHHhh------hHHHHHHHHHHhCcCccccccCCCCcCCHHHHHHHHHHcc----CHHHHHHHHHHh
Confidence            567888888888887753      35778888888874       8899999999999998763    247899999999


Q ss_pred             CCCCCCcccHHHHHHHHHHh-CCC---------CCHHHHHHHHHHhCCC----CCCceeHHHHHHHHhccC
Q psy2947         381 DTTKSGTVPAKYLKHVLVNW-GEG---------LSSKEVDQIFREANVT----MNSKVRYEDFVKIACAPV  437 (441)
Q Consensus       381 D~~~~G~is~~ef~~~l~~~-~~~---------l~~~~~~~l~~~~d~d----~dg~i~~~ef~~~l~~~~  437 (441)
                      |.+++|+|+.+||+++|... |..         ++++++++|++++|.|    ++|.|+|+||+++|....
T Consensus       229 D~d~~g~Is~~eL~~fL~~~Qge~~~~~~~~~~~t~ee~~~iI~~~d~d~~~~~dg~is~eeF~~~L~S~~  299 (799)
T 2zkm_X          229 HAKAKPYMTKEHLTKFINQKQRDSRLNSLLFPPARPDQVQGLIDKYEPSGINAQRGQLSPEGMVWFLCGPE  299 (799)
T ss_dssp             ------CCCHHHHHHHHHHTCC---------------CHHHHHHHHCCC--------CCHHHHHHHHHSTT
T ss_pred             ccCCCCeEcHHHHHHHHHHhcCCcccccccccCCCHHHHHHHHHHhhcccccccCCccchhhhhhcccCcc
Confidence            99999999999999999997 665         7889999999999998    899999999999997653

>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}

Probab=99.38  E-value=2.3e-12  Score=97.37  Aligned_cols=71  Identities=38%  Similarity=0.673  Sum_probs=65.5

Q ss_pred             cCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         365 KAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       365 ~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      ......++++.+|+.+|.|++|.|+.+||+.+++.+|..+++++++.+++.+|.|++|.|+|+||+.++.+
T Consensus        23 ~~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~~~D~d~dG~I~~~EF~~~~~~   93 (94)
T 2kz2_A           23 KDTDSEEEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA   93 (94)
T ss_dssp             CCCSCHHHHHHHHHHHCTTCCSCBCHHHHHHHHHHHTCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHC
T ss_pred             cCCCHHHHHHHHHHHHCCCCcCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHhc
Confidence            34455788999999999999999999999999999999999999999999999999999999999998865

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1

Probab=99.37  E-value=5.8e-13  Score=141.66  Aligned_cols=120  Identities=15%  Similarity=0.251  Sum_probs=105.2

Q ss_pred             HhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCc
Q psy2947         308 AEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGT  387 (441)
Q Consensus       308 ~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~  387 (441)
                      .+++|.|+.+||..++..... ..+.+.+..+|+.+|.|++|.|+++||..++..........+.+..+|+.| .|++|+
T Consensus       736 ~d~~G~I~~~El~~~l~~~g~-~~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~~~~~~~~~~~l~~aF~~~-~d~~G~  813 (863)
T 1sjj_A          736 RKKTGMMDCEDFRACLISMGY-NMGEAEFARIMSIVDPNRMGVVTFQAFIDFMSRETADTDTADQVMASFKIL-AGDKNY  813 (863)
T ss_dssp             SSSSSEEESTTHHHHHHHHTC-CCCTHHHHHHHHHHCTTSCSEEETTHHHHTHHHHSTTCSSSHHHHHHHHGG-GTSSSE
T ss_pred             CCCCCCcCHHHHHHHHHHcCC-CCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHH-hCCCCc
Confidence            478999999999999987643 456788999999999999999999999998887654455568899999999 899999


Q ss_pred             ccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCC-----CCCceeHHHHHHHHhcc
Q psy2947         388 VPAKYLKHVLVNWGEGLSSKEVDQIFREANVT-----MNSKVRYEDFVKIACAP  436 (441)
Q Consensus       388 is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d-----~dg~i~~~ef~~~l~~~  436 (441)
                      |+.+||+.++.       +++++.+++.+|.+     +||.|+|+||+.+|.+.
T Consensus       814 Is~~El~~~l~-------~~~~~~l~~~~d~~~~~~~~dg~I~~~eF~~~~~~~  860 (863)
T 1sjj_A          814 ITVDELRRELP-------PDQAEYCIARMAPYNGRDAVPGALDYMSFSTALYGE  860 (863)
T ss_dssp             EEHHHHHHHSC-------HHHHHHHHHHSEECCSSCCCTTEEESHHHHHHHSCC
T ss_pred             CcHHHHHHHCC-------HHHHHHHHHHcchhcCCCCCCCceeHHHHHHHHhcC
Confidence            99999999983       78899999999976     69999999999999754

>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A

Probab=99.37  E-value=3e-12  Score=105.92  Aligned_cols=101  Identities=18%  Similarity=0.203  Sum_probs=87.6

Q ss_pred             HHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCC-----CHHH
Q psy2947         334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGL-----SSKE  408 (441)
Q Consensus       334 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l-----~~~~  408 (441)
                      ..+..+|+.+|.|++|.|+.+||..++... ........+..+|+.+|.+++|.|+++||..++.......     ..+.
T Consensus        11 ~~l~~~F~~~D~d~~G~i~~~el~~~l~~~-~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~   89 (153)
T 3ox6_A           11 EELREAFREFDKDKDGYINCRDLGNCMRTM-GYMPTEMELIELSQQINMNLGGHVDFDDFVELMGPKLLAETADMIGVKE   89 (153)
T ss_dssp             HHHHHHHHHHHHHCSSSCCHHHHHHHHHHT-TCCCCHHHHHHHHHHHHTTSTTCCCHHHHHHHHHHHHTTCCHHHHCHHH
T ss_pred             HHHHHHHHHhCCCCCCcCcHHHHHHHHHHc-CCCCCHHHHHHHHHHhCCCCCccCcHHHHHHHHHHHhhccccccccHHH
Confidence            457888999999999999999999999877 3455578899999999999999999999999997643222     2577


Q ss_pred             HHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         409 VDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       409 ~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      +..+|+.+|.|++|.|+.+||..++..
T Consensus        90 ~~~~F~~~D~d~~G~i~~~el~~~l~~  116 (153)
T 3ox6_A           90 LRDAFREFDTNGDGEISTSELREAMRA  116 (153)
T ss_dssp             HHHHHHHHCTTCSSSBCHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence            899999999999999999999998864

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.36  E-value=1.1e-12  Score=111.86  Aligned_cols=103  Identities=18%  Similarity=0.166  Sum_probs=93.0

Q ss_pred             CCcccEEeccCCCcC--cccCCCCCCCEEEccCCCCCcCCcC-ccCCCCCcEEEccCCcCCCCCCch--hhhcCCCCCEE
Q psy2947          60 FSHAFLLSLSYTPIG--RRIFKCDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPF--TLTFCKNLTHL  134 (441)
Q Consensus        60 l~~L~~l~l~~n~i~--~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~p~--~~~~l~~L~~L  134 (441)
                      .++|+.|++++|.|.  ..+..+++|++|+|++|+|+.+|+. +..+++|+.|++++|.++  .+|.  .+..+++|++|
T Consensus        41 ~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~--~~~~~~~l~~l~~L~~L  118 (176)
T 1a9n_A           41 LDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV--ELGDLDPLASLKSLTYL  118 (176)
T ss_dssp             TTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC--CGGGGGGGGGCTTCCEE
T ss_pred             CCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC--cchhhHhhhcCCCCCEE
Confidence            348999999999665  4677899999999999999999877 489999999999999997  7887  78999999999


Q ss_pred             EccCCCCCccchh----hcCCCCCCEEEccCCcC
Q psy2947         135 YLDNNLLDALPGF----LLSMPQLDTVYRHGNHN  164 (441)
Q Consensus       135 ~l~~n~l~~lp~~----~~~l~~L~~L~l~~N~~  164 (441)
                      ++++|+++.+|..    +..+++|+.|++++|..
T Consensus       119 ~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A          119 CILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             ECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             EecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            9999999999874    88999999999999984

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.36  E-value=2.7e-12  Score=129.46  Aligned_cols=137  Identities=19%  Similarity=0.206  Sum_probs=108.6

Q ss_pred             ccCCCCCCCEEE-ccCCCCCcCCc------CccC--CCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEccCCCCCccch
Q psy2947          76 RIFKCDTVEVLS-LKSNSLTSLPP------DIGR--LTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPG  146 (441)
Q Consensus        76 ~~~~l~~L~~L~-l~~n~l~~lp~------~~~~--l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~  146 (441)
                      .+..+++|+.|+ ++.|.+..++.      .+..  ...|+.|++++|.++  .+|. ++.+++|+.|+|++|+|+.+|.
T Consensus       404 ~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~--~lp~-~~~l~~L~~L~Ls~N~l~~lp~  480 (567)
T 1dce_A          404 TLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT--VLCH-LEQLLLVTHLDLSHNRLRALPP  480 (567)
T ss_dssp             HHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCS--SCCC-GGGGTTCCEEECCSSCCCCCCG
T ss_pred             HHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCC--CCcC-ccccccCcEeecCcccccccch
Confidence            345567788887 55554332221      0111  135899999999998  6887 9999999999999999999999


Q ss_pred             hhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccC--CchhhhhhhhcccccccccCCCCC
Q psy2947         147 FLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQ--PSRLQDLAVQSVIASKENFFEPGL  223 (441)
Q Consensus       147 ~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~--p~~l~~l~~l~~l~l~~n~~~~~~  223 (441)
                      .++.+++|+.|+|++|.+.          .+| .+..++.+..+ +++|.+..+  |..+..+++|+.|++++|++..  
T Consensus       481 ~~~~l~~L~~L~Ls~N~l~----------~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~--  547 (567)
T 1dce_A          481 ALAALRCLEVLQASDNALE----------NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ--  547 (567)
T ss_dssp             GGGGCTTCCEEECCSSCCC----------CCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG--
T ss_pred             hhhcCCCCCEEECCCCCCC----------CCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC--
Confidence            9999999999999999963          245 67788888888 899999888  8999999999999999998764  


Q ss_pred             CCchh
Q psy2947         224 FPGPL  228 (441)
Q Consensus       224 ~p~~~  228 (441)
                      +|...
T Consensus       548 ~~~~~  552 (567)
T 1dce_A          548 EEGIQ  552 (567)
T ss_dssp             SSSCT
T ss_pred             CccHH
Confidence            44433

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.35  E-value=1.8e-12  Score=107.12  Aligned_cols=102  Identities=23%  Similarity=0.206  Sum_probs=89.4

Q ss_pred             CCCCcccEEeccCCCcC--cccCCCCCCCEEEccCCCCCc-CCcCccCCCCCcEEEccCCcCCCCCCc--hhhhcCCCCC
Q psy2947          58 QYFSHAFLLSLSYTPIG--RRIFKCDTVEVLSLKSNSLTS-LPPDIGRLTNLRVLCLTDNCLQNASIP--FTLTFCKNLT  132 (441)
Q Consensus        58 ~~l~~L~~l~l~~n~i~--~~~~~l~~L~~L~l~~n~l~~-lp~~~~~l~~L~~L~l~~n~l~~~~~p--~~~~~l~~L~  132 (441)
                      ..+++|+.|++++|.+.  ..+..+++|++|++++|.++. +|..+..+++|++|++++|.++  .+|  ..+..+++|+
T Consensus        39 ~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~--~~~~~~~~~~l~~L~  116 (149)
T 2je0_A           39 DEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK--DLSTIEPLKKLENLK  116 (149)
T ss_dssp             TTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCC--SHHHHGGGGGCTTCC
T ss_pred             hhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCC--ChHHHHHHhhCCCCC
Confidence            34789999999999654  567789999999999999997 7776888999999999999998  554  7789999999


Q ss_pred             EEEccCCCCCccch----hhcCCCCCCEEEccC
Q psy2947         133 HLYLDNNLLDALPG----FLLSMPQLDTVYRHG  161 (441)
Q Consensus       133 ~L~l~~n~l~~lp~----~~~~l~~L~~L~l~~  161 (441)
                      +|++++|+++.+|.    .+..+++|+.|++++
T Consensus       117 ~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          117 SLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             EEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             EEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            99999999988875    688899999998864

>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C

Probab=99.35  E-value=7.1e-12  Score=104.69  Aligned_cols=117  Identities=15%  Similarity=0.146  Sum_probs=93.1

Q ss_pred             HHHHHhhhccccCCCccCHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCC--CCCHHHHHHHHHhh
Q psy2947         266 LEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKA--EDIPKEVVDAFKAA  343 (441)
Q Consensus       266 ~~l~~~f~~~d~~G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~--~~~~~~~~~~f~~~  343 (441)
                      .+++.++..   -|..++..++..++.. .            .+++|.|+|+||+.++......  ....+.++.+|+.|
T Consensus        31 ~El~~~lr~---lG~~~t~~el~~~~~~-d------------~~~~g~i~f~eFl~~~~~~~~~~~~~~~~~l~~aF~~f   94 (159)
T 3i5g_C           31 AKVGDLLRC---LGMNPTEAQVHQHGGT-K------------KMGEKAYKLEEILPIYEEMSSKDTGTAADEFMEAFKTF   94 (159)
T ss_dssp             GGHHHHHHH---TTCCCCHHHHHTTTCC-S------------STTSCEECHHHHHHHHHHHTTCCTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHH---cCCCCCHHHHHHHHcc-c------------ccCCCcccHHHHHHHHHHhhcccccchHHHHHHHHHHH
Confidence            344555533   3554477777665432 2            5789999999999999876543  45578899999999


Q ss_pred             cCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCC--CCCCcccHHHHHHHHHH
Q psy2947         344 DTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADT--TKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       344 D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~--~~~G~is~~ef~~~l~~  399 (441)
                      |.|++|+|+.+||++++..+ +...+.+++..+++.+|.  |++|.|+++||.++|..
T Consensus        95 D~d~~G~I~~~el~~~l~~~-g~~ls~~e~~~l~~~~D~~~d~dG~I~~~EF~~~m~~  151 (159)
T 3i5g_C           95 DREGQGLISSAEIRNVLKML-GERITEDQCNDIFTFCDIREDIDGNIKYEDLMKKVMA  151 (159)
T ss_dssp             CTTSSSEECHHHHHHHHHHS-SSCCCHHHHHHHHHHTTCCCCSSCCEEHHHHHHHHHH
T ss_pred             hcCCCCcCcHHHHHHHHHHh-CCCCCHHHHHHHHHHhCcCCCCCCeEeHHHHHHHHHC
Confidence            99999999999999999887 456678899999999995  88999999999999865

>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo pealeii}

Probab=99.34  E-value=3.9e-12  Score=109.74  Aligned_cols=102  Identities=14%  Similarity=0.188  Sum_probs=83.7

Q ss_pred             HHHHHHHHhh-cCCCCCcccHHHHHHHHHhhc---cCCCChHHHHHHH-----------HHhCCCCCCcccHHHHHHHHH
Q psy2947         334 KEVVDAFKAA-DTTKSGKLSFPDFLKVMHTHS---KAEDIPKEVVDAF-----------KAADTTKSGTVPAKYLKHVLV  398 (441)
Q Consensus       334 ~~~~~~f~~~-D~d~~g~i~~~ef~~~~~~~~---~~~~~~~~~~~~f-----------~~~D~~~~G~is~~ef~~~l~  398 (441)
                      .+++.+|+.+ |.|++|.|+.+||..++....   +.......+..+|           +.+|.|++|.|+++||..++.
T Consensus        12 ~~l~~~F~~~~D~d~dG~i~~~E~~~~l~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~~   91 (191)
T 2ccm_A           12 NKILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRKYADENEDEQVTKEEWLKMWA   91 (191)
T ss_dssp             HHHHHHHHHHTCTTCSSEECHHHHHHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHHHHCTTCSSCEEHHHHHHHHH
T ss_pred             HHHHHhccccccCCCCCeeeHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCeECHHHHHHHHH
Confidence            5688999999 999999999999999888762   2233345666666           999999999999999999987


Q ss_pred             HhC------C---CCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         399 NWG------E---GLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       399 ~~~------~---~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      ...      .   ....+.+..+|+.+|.|++|.|+++||..++..
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~I~~~E~~~~l~~  137 (191)
T 2ccm_A           92 ECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKHEYSTVYMS  137 (191)
T ss_dssp             HHHHHHHTTCCCCHHHHHHHHHHHHHHCTTCSSBCCHHHHHHHHHT
T ss_pred             HHhccccchhhchHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence            752      1   122467889999999999999999999998843

>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5

Probab=99.34  E-value=1.5e-12  Score=112.15  Aligned_cols=102  Identities=19%  Similarity=0.220  Sum_probs=88.3

Q ss_pred             HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHH
Q psy2947         333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQI  412 (441)
Q Consensus       333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l  412 (441)
                      ...++.+|+.+|.|++|.|+.+||..++..+ ......+.+..+|+.+|.+++|.|+++||..++.........+.+..+
T Consensus         9 ~~~l~~~F~~~D~d~dG~I~~~E~~~~l~~~-g~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~~~~~~~~~~~~~l~~~   87 (188)
T 1s6i_A            9 IGGLKELFKMIDTDNSGTITFDELKDGLKRV-GSELMESEIKDLMDAADIDKSGTIDYGEFIAATVHLNKLEREENLVSA   87 (188)
T ss_dssp             TCSHHHHHHTTSSSSSSCEEHHHHHHHHTTT-TCCCCHHHHHHHHHHTCTTCSSEECHHHHHHHHTTSSSSCCCCSTHHH
T ss_pred             HHHHHHHHHHHCCCCCCcCCHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCCCCeEeHHHHHHHHHHHhccCHHHHHHHH
Confidence            3468899999999999999999999999877 344557889999999999999999999999998765443445678899


Q ss_pred             HHHhCCCCCCceeHHHHHHHHhc
Q psy2947         413 FREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       413 ~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      |+.+|.|++|.|+.+||..++..
T Consensus        88 F~~~D~d~dG~Is~~El~~~l~~  110 (188)
T 1s6i_A           88 FSYFDKDGSGYITLDEIQQACKD  110 (188)
T ss_dssp             HHHTTTTCSSEEEHHHHHHTTTT
T ss_pred             HHHHCCCCCCcCcHHHHHHHHHH
Confidence            99999999999999999988753

>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A

Probab=99.34  E-value=4.3e-12  Score=108.23  Aligned_cols=102  Identities=17%  Similarity=0.218  Sum_probs=87.4

Q ss_pred             HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhC-CCCCHHHHHH
Q psy2947         333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWG-EGLSSKEVDQ  411 (441)
Q Consensus       333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~-~~l~~~~~~~  411 (441)
                      ...++.+|+.+|.|++|.|+.+||..++..+. .......+..+|+.+|.+++|.|+++||..++.... .....+.+..
T Consensus        10 ~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~-~~~~~~~~~~l~~~~D~~~~g~i~~~EF~~~~~~~~~~~~~~~~~~~   88 (179)
T 2f2o_A           10 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-QNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIRE   88 (179)
T ss_dssp             HHHHHHHHHHHCTTCSSCBCHHHHHHHHHHTT-CCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcC-CCCCHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHccCcccHHHHHH
Confidence            46788999999999999999999999998763 445577899999999999999999999999987642 1224567889


Q ss_pred             HHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         412 IFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       412 l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      +|+.+|.|++|.|+.+||..++..
T Consensus        89 ~F~~~D~d~~G~I~~~E~~~~l~~  112 (179)
T 2f2o_A           89 AFRVFDKDGNGYISAAELRHVMTN  112 (179)
T ss_dssp             HHHHHCTTCSSEECHHHHHHHHHH
T ss_pred             HHHHhCCCCCCcCcHHHHHHHHHH
Confidence            999999999999999999998854

>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} SCOP: a.39.1.5

Probab=99.33  E-value=4.7e-12  Score=108.44  Aligned_cols=102  Identities=16%  Similarity=0.153  Sum_probs=83.4

Q ss_pred             HHHHHHHHhh-cCCCCCcccHHHHHHHHHhhcc---CCCChHHHH-----------HHHHHhCCCCCCcccHHHHHHHHH
Q psy2947         334 KEVVDAFKAA-DTTKSGKLSFPDFLKVMHTHSK---AEDIPKEVV-----------DAFKAADTTKSGTVPAKYLKHVLV  398 (441)
Q Consensus       334 ~~~~~~f~~~-D~d~~g~i~~~ef~~~~~~~~~---~~~~~~~~~-----------~~f~~~D~~~~G~is~~ef~~~l~  398 (441)
                      .+++.+|+.+ |.|++|.|+++||..++.....   .......+.           .+|+.+|.|++|.|+++||..++.
T Consensus         8 ~~l~~~F~~~~D~d~dG~i~~~E~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~   87 (185)
T 2sas_A            8 QKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRADINKDDVVSWEEYLAMWE   87 (185)
T ss_dssp             HHHHHHHHHHTCTTCSSEECHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHCTTCSSCEEHHHHHHHHH
T ss_pred             HHHHHHHHHheeCCCCCeEcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEcHHHHHHHHH
Confidence            5688999999 9999999999999998877641   223344444           349999999999999999999998


Q ss_pred             HhCC---------CCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         399 NWGE---------GLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       399 ~~~~---------~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      ....         ....+.+..+|+.+|.|++|.|+++||.+++..
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~Is~~E~~~~l~~  133 (185)
T 2sas_A           88 KTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQNYCKN  133 (185)
T ss_dssp             HHHHTCCSGGGSCTTHHHHHHHHHHHHCTTSSSCCCHHHHHHHTTS
T ss_pred             HHhccccchhhhhHHHHHHHHHHHHHHcCCCCCeEcHHHHHHHHHH
Confidence            7521         234578899999999999999999999998853

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.32  E-value=8.5e-12  Score=122.70  Aligned_cols=94  Identities=24%  Similarity=0.343  Sum_probs=57.0

Q ss_pred             CcccEEeccCC---CcCcccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEcc
Q psy2947          61 SHAFLLSLSYT---PIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLD  137 (441)
Q Consensus        61 ~~L~~l~l~~n---~i~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~  137 (441)
                      ++|+.|++++|   .+| .+..+++|++|++++|+++.+|..+   .+|++|++++|.++  .+| .++.+++|++|+++
T Consensus       131 ~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~--~l~-~~~~l~~L~~L~l~  203 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLE--ELP-ELQNLPFLTAIYAD  203 (454)
T ss_dssp             TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCS--SCC-CCTTCTTCCEEECC
T ss_pred             CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCC--cCc-cccCCCCCCEEECC
Confidence            56777777776   344 4666677777777777776666433   36666666666665  455 46666666666666


Q ss_pred             CCCCCccchhhcCCCCCCEEEccCCcC
Q psy2947         138 NNLLDALPGFLLSMPQLDTVYRHGNHN  164 (441)
Q Consensus       138 ~n~l~~lp~~~~~l~~L~~L~l~~N~~  164 (441)
                      +|+++.+|...   ++|+.|++++|.+
T Consensus       204 ~N~l~~l~~~~---~~L~~L~l~~n~l  227 (454)
T 1jl5_A          204 NNSLKKLPDLP---LSLESIVAGNNIL  227 (454)
T ss_dssp             SSCCSSCCCCC---TTCCEEECCSSCC
T ss_pred             CCcCCcCCCCc---CcccEEECcCCcC
Confidence            66665555321   3555555555554

>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5

Probab=99.31  E-value=4.3e-12  Score=89.17  Aligned_cols=65  Identities=15%  Similarity=0.306  Sum_probs=60.5

Q ss_pred             HHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhcc
Q psy2947         372 EVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAP  436 (441)
Q Consensus       372 ~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~~  436 (441)
                      +++.+|+.+|.+++|.|+.+||+.+++.+|..+++++++.+++.+|.|++|.|+|+||+.++.+.
T Consensus         2 ~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~D~~~dg~i~~~ef~~~~~~~   66 (67)
T 1tiz_A            2 SAKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTSCIEKM   66 (67)
T ss_dssp             THHHHHHHHCTTSSSCEEHHHHHHHHHHTCTTSCHHHHHHHHHHHCCSSSSEECHHHHHHHHHTC
T ss_pred             HHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999998753

>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*

Probab=99.31  E-value=1.8e-11  Score=100.68  Aligned_cols=100  Identities=10%  Similarity=0.083  Sum_probs=87.5

Q ss_pred             HHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHh---CCCCCCcccHHHHHHHHHHh---CCCCCHH
Q psy2947         334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAA---DTTKSGTVPAKYLKHVLVNW---GEGLSSK  407 (441)
Q Consensus       334 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~---D~~~~G~is~~ef~~~l~~~---~~~l~~~  407 (441)
                      .+++.+|+.+|.|++|.|+.+||..++... ......+.+..+|+.+   |.++ |.|+++||..++...   ......+
T Consensus         8 ~~l~~~F~~~D~~~~G~i~~~el~~~l~~~-~~~~~~~~~~~l~~~~~~~d~~~-g~i~~~eF~~~~~~~~~~~~~~~~~   85 (149)
T 2mys_C            8 DDFKEAFLLFDRTGDAKITASQVGDIARAL-GQNPTNAEINKILGNPSKEEMNA-AAITFEEFLPMLQAAANNKDQGTFE   85 (149)
T ss_pred             HHHHHHHHHhCCCCCCcCcHHHHHHHHHHh-CCCCCHHHHHHHHHHhhhccccC-CcCcHHHHHHHHHHHhccCCcchHH
Confidence            568899999999999999999999999877 3344578899999999   9999 999999999999875   3345678


Q ss_pred             HHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         408 EVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       408 ~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      .+..+|+.+|.|++|.|+.+||..++..
T Consensus        86 ~~~~~F~~~D~d~~G~i~~~el~~~l~~  113 (149)
T 2mys_C           86 DFVEGLRVFDKEGNGTVMGAELRHVLAT  113 (149)
T ss_pred             HHHHHHHHhCCCCCceEcHHHHHHHHHH
Confidence            8999999999999999999999998854

>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Beroe abyssicola}

Probab=99.31  E-value=9.6e-12  Score=108.92  Aligned_cols=127  Identities=13%  Similarity=0.090  Sum_probs=92.6

Q ss_pred             hHHHHHhhhccccCCCccCHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHH---------hhcCCCCCHHH
Q psy2947         265 YLEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH---------THSKAEDIPKE  335 (441)
Q Consensus       265 ~~~l~~~f~~~d~~G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~---------~~~~~~~~~~~  335 (441)
                      ..++..++..+...+.. +.+++..++..+     ..-+..++.+++|.|+++||..++.         .........++
T Consensus        55 ~~El~~~l~~~~~~~~~-~~~~~~~l~~~~-----~~lf~~~D~d~dg~i~~~EF~~~~~~~~~~~~~~~~~~~~~~~~~  128 (208)
T 2hpk_A           55 MDEVLYWPDRMRQLVNA-TDEQVEKMRDAV-----RVFFLHKGVEPVNGLLREDWVEANRVFAEAERERERRGEPSLIAL  128 (208)
T ss_dssp             HHHHTHHHHHHHHHSCC-CHHHHHHHHHHH-----HHHHHHTTCBTTTBEEGGGHHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred             HHHHHHHHHHHHhhcCC-CHHHHHHHHHHH-----HHHHHHhCCCCCCeEcHHHHHHHHHHHhhhhhhhhccCChHHHHH
Confidence            34444444333322234 677788777332     0111333368999999999999986         33233333444


Q ss_pred             -HHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         336 -VVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       336 -~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                       ++.+|+.+|.|++|.|+.+||..++....   ...+++..+|+.+|.|++|.|+++||..++...
T Consensus       129 ~~~~~F~~~D~d~~G~Is~~El~~~l~~~g---~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~~  191 (208)
T 2hpk_A          129 LSNSYYDVLDDDGDGTVDVDELKTMMKAFD---VPQEAAYTFFEKADTDKSGKLERTELVHLFRKF  191 (208)
T ss_dssp             HHHHHHHHHCTTCSSSBCHHHHHHHHHHTT---SCTTHHHHHHHHHCTTCCSSBCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCcCCHHHHHHHHHHhC---cCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence             79999999999999999999999998763   556789999999999999999999999999764

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.31  E-value=7.7e-15  Score=127.81  Aligned_cols=101  Identities=22%  Similarity=0.248  Sum_probs=58.9

Q ss_pred             CCcccEEeccCC---CcCcccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEc
Q psy2947          60 FSHAFLLSLSYT---PIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL  136 (441)
Q Consensus        60 l~~L~~l~l~~n---~i~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l  136 (441)
                      +++|+.|++++|   .+| .+..+++|++|++++|.++.+|..+..+++|+.|++++|+++  .+| .+..+++|++|++
T Consensus        47 l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~--~l~-~~~~l~~L~~L~l  122 (198)
T 1ds9_A           47 LKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIA--SLS-GIEKLVNLRVLYM  122 (198)
T ss_dssp             TTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECC--CHH-HHHHHHHSSEEEE
T ss_pred             CCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCC--cCC-ccccCCCCCEEEC
Confidence            455666666665   333 444556666666666666666555555566666666666665  344 4555666666666


Q ss_pred             cCCCCCccch--hhcCCCCCCEEEccCCcC
Q psy2947         137 DNNLLDALPG--FLLSMPQLDTVYRHGNHN  164 (441)
Q Consensus       137 ~~n~l~~lp~--~~~~l~~L~~L~l~~N~~  164 (441)
                      ++|+++.+|.  .+..+++|+.|++++|++
T Consensus       123 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A          123 SNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             SEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred             CCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence            6666655542  455566666666666653

>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium binding protein; NMR {Gallus gallus} PDB: 2kyf_A

Probab=99.30  E-value=5.7e-13  Score=103.67  Aligned_cols=100  Identities=13%  Similarity=0.180  Sum_probs=80.8

Q ss_pred             CCcCHHHHHHHHH--hCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhc--cCCCChH
Q psy2947         296 MSPTIAELKKYLA--EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHS--KAEDIPK  371 (441)
Q Consensus       296 ~~~~~~~~~~~~~--~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~--~~~~~~~  371 (441)
                      ..++..++.+++.  +++|.|+++||..++...   ....+.++.+|+.+|.|++|.|+.+||..++....  ......+
T Consensus         4 ~~~~~~e~~~l~~~~d~~g~i~~~eF~~~~~~~---~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~   80 (108)
T 2kyc_A            4 DILSPSDIAAALRDCQAPDSFSPKKFFQISGMS---KKSSSQLKEIFRILDNDQSGFIEEDELKYFLQRFESGARVLTAS   80 (108)
T ss_dssp             SSSCHHHHHHHHTTSCSTTTCCHHHHHHHHTCT---TCCSSSHHHHCSSSCSCCSSCCCGGGTTTSHHHHSSSCCCCCTT
T ss_pred             ccCCHHHHHHHHHHcCCCCcCCHHHHHHHHhhC---cccHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHHhhccCCCCHH
Confidence            3445555555554  378999999999998522   34457799999999999999999999999998763  2344567


Q ss_pred             HHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy2947         372 EVVDAFKAADTTKSGTVPAKYLKHVLV  398 (441)
Q Consensus       372 ~~~~~f~~~D~~~~G~is~~ef~~~l~  398 (441)
                      +++.+|+.+|.+++|.|+++||..+++
T Consensus        81 ~~~~~~~~~D~d~dg~i~~~eF~~~~~  107 (108)
T 2kyc_A           81 ETKTFLAAADHDGDGKIGAEEFQEMVQ  107 (108)
T ss_dssp             TTHHHHTTTCCSSSSCCCSSHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCcCCHHHHHHHHh
Confidence            889999999999999999999999875

>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...

Probab=99.30  E-value=7.1e-12  Score=104.28  Aligned_cols=100  Identities=9%  Similarity=0.082  Sum_probs=88.2

Q ss_pred             HHHHHHHHhhcC--CCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCC--CCCHHHH
Q psy2947         334 KEVVDAFKAADT--TKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGE--GLSSKEV  409 (441)
Q Consensus       334 ~~~~~~f~~~D~--d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~--~l~~~~~  409 (441)
                      ..++.+|+.+|.  |++|.|+.+||..++..+. .......+..+ +.+|.+++|.|+++||..++.....  ....+.+
T Consensus         9 ~~l~~~F~~~D~~~d~~G~i~~~el~~~l~~~g-~~~~~~~~~~l-~~~D~~~~g~i~~~eF~~~~~~~~~~~~~~~~~l   86 (156)
T 1wdc_C            9 DDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLG-INPRNEDVFAV-GGTHKMGEKSLPFEEFLPAYEGLMDCEQGTFADY   86 (156)
T ss_dssp             HHHHHHHHHHHHHTCSSSCEEGGGHHHHHHHTT-CCCCHHHHHHT-TCCSSTTSCEECHHHHHHHHHHHTTSCCCCHHHH
T ss_pred             HHHHHHHHHHccCCCCCCCCcHHHHHHHHHHcC-CCCCHHHHHHH-HhhCCCCCCeeeHHHHHHHHHHHhhccCChHHHH
Confidence            457889999999  9999999999999998873 34556788888 9999999999999999999988643  5677899


Q ss_pred             HHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         410 DQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       410 ~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      ..+|+.+|.|++|.|+.+||..++..
T Consensus        87 ~~~F~~~D~d~~G~I~~~el~~~l~~  112 (156)
T 1wdc_C           87 MEAFKTFDREGQGFISGAELRHVLTA  112 (156)
T ss_dssp             HHHHHTTCSSSSSEEEHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence            99999999999999999999998853

>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding protein; 1.45A {Homo sapiens} SCOP: a.39.1.2 PDB: 3nsi_A 1kso_A 3nsk_A 3nsl_A

Probab=99.30  E-value=3.8e-12  Score=96.70  Aligned_cols=65  Identities=11%  Similarity=0.172  Sum_probs=56.5

Q ss_pred             HHHHHHHHHhC-CCCC-CcccHHHHHHHHHH-----hCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         371 KEVVDAFKAAD-TTKS-GTVPAKYLKHVLVN-----WGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       371 ~~~~~~f~~~D-~~~~-G~is~~ef~~~l~~-----~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      +.+..+|+.|| +||+ |+|+.+||+.+++.     +|..+++++++.+++.+|.|+||.|+|+||+.+|.+
T Consensus        10 ~~l~~aF~~fd~~dg~~G~Is~~EL~~~l~~~l~~~lg~~~~~~ev~~~i~~~D~dgDG~Idf~EF~~~~~~   81 (101)
T 3nso_A           10 AAIVCTFQEYAGRCGDKYKLCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCEVDFVEYVRSLAC   81 (101)
T ss_dssp             HHHHHHHHHHHTTSSCTTEECHHHHHHHHHHHTTTCCCCTTCHHHHHHHHHHHHHCCCSCEEHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCCCCCEECHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence            56778999997 8887 99999999999986     457788999999999999999999999999988754

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.29  E-value=2.6e-12  Score=129.82  Aligned_cols=129  Identities=12%  Similarity=0.188  Sum_probs=67.4

Q ss_pred             hHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHH----hCCCcccHHHHHHHHHhhcCCCCCHHHHHH
Q psy2947         265 YLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLA----EKGGKLSFPDFLKVMHTHSKAEDIPKEVVD  338 (441)
Q Consensus       265 ~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~  338 (441)
                      ...++++|..+|.+  |.| +.+|++.+++.++..++..++..++.    +++|.|+++||..++.....    .+++++
T Consensus        10 e~~l~~~F~~fD~d~dG~I-s~~El~~~l~~lg~~~s~~el~~lf~~~D~d~~G~I~f~EF~~~~~~l~~----~~el~~   84 (624)
T 1djx_A           10 QHWIHSCLRKADKNKDNKM-NFKELKDFLKELNIQVDDGYARKIFRECDHSQTDSLEDEEIETFYKMLTQ----RAEIDR   84 (624)
T ss_dssp             -----------------------------------------------------------CTTHHHHHHTC----CHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCcC-cHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHhcc----HHHHHH
Confidence            34688999999986  789 89999999999988888777777664    68899999999999987633    478999


Q ss_pred             HHHhhcCCCCCcccHHHHHHHHHhhccCC-CChHHHHHHHHHhCCC----CCCcccHHHHHHHHHH
Q psy2947         339 AFKAADTTKSGKLSFPDFLKVMHTHSKAE-DIPKEVVDAFKAADTT----KSGTVPAKYLKHVLVN  399 (441)
Q Consensus       339 ~f~~~D~d~~g~i~~~ef~~~~~~~~~~~-~~~~~~~~~f~~~D~~----~~G~is~~ef~~~l~~  399 (441)
                      +|+.||.+ +|.|+.+||++++...++.. ..+++++++|+.+|.+    ++|.|+++||.++|..
T Consensus        85 aF~~fD~~-~G~Is~~EL~~fL~~~qge~~ls~ee~~~ii~~~d~d~~~~~dG~Is~deF~~~L~s  149 (624)
T 1djx_A           85 AFEEAAGS-AETLSVERLVTFLQHQQREEEAGPALALSLIERYEPSETAKAQRQMTKDGFLMYLLS  149 (624)
T ss_dssp             HHHHHHTT-SSSEEHHHHHHHHHHTSCCSSCSHHHHHHHHHHHCCCHHHHHTTEECHHHHHHHHHS
T ss_pred             HHHHhcCC-CCeecHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCChhhccCCCCCHHHHHHHhcC
Confidence            99999985 89999999999999765554 6688999999999998    7999999999999975

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.28  E-value=3.1e-13  Score=127.68  Aligned_cols=84  Identities=26%  Similarity=0.222  Sum_probs=38.5

Q ss_pred             CCCCCCCEEEccCCCCC-c-CCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEccCC-CCC--ccchhhcCCC
Q psy2947          78 FKCDTVEVLSLKSNSLT-S-LPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNN-LLD--ALPGFLLSMP  152 (441)
Q Consensus        78 ~~l~~L~~L~l~~n~l~-~-lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~--~lp~~~~~l~  152 (441)
                      ..+++|++|++++|.++ . +|..+..+++|++|++++|.++ +..|..++.+++|++|++++| .++  .+|..+..++
T Consensus        90 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~-~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~  168 (336)
T 2ast_B           90 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS-DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS  168 (336)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCC-HHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred             ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccC-HHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC
Confidence            34444555555544444 1 3434444445555555554444 333444444445555555544 343  2344444444


Q ss_pred             CCCEEEccCC
Q psy2947         153 QLDTVYRHGN  162 (441)
Q Consensus       153 ~L~~L~l~~N  162 (441)
                      +|+.|++++|
T Consensus       169 ~L~~L~l~~~  178 (336)
T 2ast_B          169 RLDELNLSWC  178 (336)
T ss_dssp             TCCEEECCCC
T ss_pred             CCCEEcCCCC
Confidence            4555555444

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.28  E-value=3.1e-13  Score=130.39  Aligned_cols=20  Identities=5%  Similarity=0.018  Sum_probs=10.4

Q ss_pred             CCchhhhhhhhccccccccc
Q psy2947         199 QPSRLQDLAVQSVIASKENF  218 (441)
Q Consensus       199 ~p~~l~~l~~l~~l~l~~n~  218 (441)
                      +|..+..+++|+.|++++|.
T Consensus       236 l~~~l~~~~~L~~L~L~~n~  255 (386)
T 2ca6_A          236 LAIALKSWPNLRELGLNDCL  255 (386)
T ss_dssp             HHHHGGGCTTCCEEECTTCC
T ss_pred             HHHHHccCCCcCEEECCCCC
Confidence            44445555555555555554

>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}

Probab=99.28  E-value=8.5e-12  Score=102.11  Aligned_cols=69  Identities=19%  Similarity=0.228  Sum_probs=61.3

Q ss_pred             CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         330 EDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       330 ~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      ....+.+..+|+.+|.|++|.|+.+||..++... ......+++..+|+.+|.|++|.|+++||.+++..
T Consensus        72 ~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~-g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~~  140 (143)
T 3j04_B           72 TDPEDVIRNAFACFDEEASGFIHEDHLRELLTTM-GDRFTDEEVDEMYREAPIDKKGNFNYVEFTRILKH  140 (143)
T ss_dssp             SCCHHHHHHHHTTSCSSSCCCCCTTTHHHHHHTS-SSCCCHHHHHHHHHHTTCCSSSCCCSTHHHHHHHS
T ss_pred             CCcHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHhc
Confidence            3456788999999999999999999999999876 44566789999999999999999999999999874

>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A

Probab=99.28  E-value=3.2e-11  Score=106.98  Aligned_cols=96  Identities=18%  Similarity=0.202  Sum_probs=81.9

Q ss_pred             HHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH-------hC------C
Q psy2947         336 VVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN-------WG------E  402 (441)
Q Consensus       336 ~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~-------~~------~  402 (441)
                      +..+|+.||.|++|.|++.||+.++..+.++ ..+++++-+|+.+| |++|.|+.+|+..+++.       +|      .
T Consensus       134 a~~lf~~FD~~~~G~I~f~ef~~aLs~l~rG-~leeKL~w~F~lyD-D~~G~I~~~El~~il~~i~~i~~~vge~~~~~~  211 (261)
T 1eg3_A          134 LNWLLNVYDTGRTGRIRVLSFKTGIISLCKA-HLEDKYRYLFKQVA-SSTGFCDQRRLGLLLHDSIQIPRQLGEVASFGG  211 (261)
T ss_dssp             HHHHHHHHCTTCCSEEEHHHHHHHHHHTSSS-CHHHHHHHHHHHHS-CTTSCBCHHHHHHHHHHHHHHHHHTTCGGGGTC
T ss_pred             HHHHHHHccCCCCceEeHHHHHHHHHHHcCC-CHHHHHHHHHheee-CCCCCCcHHHHHHHHHHHHHHHHhcCCcccCCC
Confidence            5668999999999999999999999987544 44789999999999 99999999999999865       23      2


Q ss_pred             CCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         403 GLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       403 ~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      .-.++.++.+|+.+|  +||.|+.+||++.+.+
T Consensus       212 ~~~e~~v~~~F~~~d--~dg~It~~EFl~~~~~  242 (261)
T 1eg3_A          212 SNIEPSVRSCFQFAN--NKPEIEAALFLDWMRL  242 (261)
T ss_dssp             SCCHHHHHHHHHHTT--TCSCBCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHhCC--CCCcCCHHHHHHHHHh
Confidence            235777899999995  7899999999998754

>3akb_A Putative calcium binding protein; EF-hand, metal binding protein; 1.50A {Streptomyces coelicolor} PDB: 3aka_A

Probab=99.27  E-value=1.2e-11  Score=103.81  Aligned_cols=102  Identities=12%  Similarity=0.069  Sum_probs=80.2

Q ss_pred             HHHHHHHHhhcCCCCCcccHHHHHHHHHhh---ccCCCChHHHH-----------HHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTH---SKAEDIPKEVV-----------DAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       334 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~---~~~~~~~~~~~-----------~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      .+++.+|+.+|.|++|.|+.+||..++...   .+......++.           .+|+.+|.+++|.|+++||..++..
T Consensus         4 ~~l~~~F~~~D~d~dG~i~~~E~~~~l~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~   83 (166)
T 3akb_A            4 RRIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGIADRDGDQRITREEFVTGAVK   83 (166)
T ss_dssp             HHHHHHHHHHCTTCSSEECHHHHHHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHHHHCTTSSSCEEHHHHHHTHHH
T ss_pred             HHHHHHHhHHcCCCCCCcCHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence            568899999999999999999999976432   12233333443           5589999999999999999999887


Q ss_pred             hCCCCC-------HHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         400 WGEGLS-------SKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       400 ~~~~l~-------~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      .....+       .+.+..+|+.+|.|++|.|+.+||..++..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~E~~~~l~~  126 (166)
T 3akb_A           84 RLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVADTARALTA  126 (166)
T ss_dssp             HHHHSHHHHHHHHHHHHHHHHHHHCSSSSSCCBHHHHHHHHHH
T ss_pred             HhccCccchHHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHH
Confidence            532111       234889999999999999999999988753

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.27  E-value=5.3e-13  Score=128.73  Aligned_cols=157  Identities=18%  Similarity=0.120  Sum_probs=96.9

Q ss_pred             CCCcccEEeccCCCcCc--------ccCCCCCCCEEEccCCCCCc-----CCcCccCC---------CCCcEEEccCCcC
Q psy2947          59 YFSHAFLLSLSYTPIGR--------RIFKCDTVEVLSLKSNSLTS-----LPPDIGRL---------TNLRVLCLTDNCL  116 (441)
Q Consensus        59 ~l~~L~~l~l~~n~i~~--------~~~~l~~L~~L~l~~n~l~~-----lp~~~~~l---------~~L~~L~l~~n~l  116 (441)
                      .+++|+.|+|++|.+..        .+..+++|++|+|++|.++.     ++..+..+         ++|++|++++|++
T Consensus        92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l  171 (386)
T 2ca6_A           92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL  171 (386)
T ss_dssp             TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred             hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCC
Confidence            35666777777764432        44556677777777777652     22223333         6777777777776


Q ss_pred             CCCCCc---hhhhcCCCCCEEEccCCCCC------ccchhhcCCCCCCEEEccCCcCccCcccccccccccccccccchh
Q psy2947         117 QNASIP---FTLTFCKNLTHLYLDNNLLD------ALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTR  187 (441)
Q Consensus       117 ~~~~~p---~~~~~l~~L~~L~l~~n~l~------~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~  187 (441)
                      +.+.+|   ..+..+++|++|++++|+|+      -+|..+..+++|+.|+|++|.+....     ...+|..+..++.+
T Consensus       172 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g-----~~~l~~~l~~~~~L  246 (386)
T 2ca6_A          172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG-----SSALAIALKSWPNL  246 (386)
T ss_dssp             TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH-----HHHHHHHGGGCTTC
T ss_pred             CcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH-----HHHHHHHHccCCCc
Confidence            422344   34556677777777777775      22335666777777777777742110     13356666677777


Q ss_pred             HHH-HhhcccccC-----Cchhhh--hhhhcccccccccCC
Q psy2947         188 DEV-LRKQKKLHQ-----PSRLQD--LAVQSVIASKENFFE  220 (441)
Q Consensus       188 ~~~-l~~~~~~~~-----p~~l~~--l~~l~~l~l~~n~~~  220 (441)
                      ..+ +++|.++..     |..+..  +++|+.|++++|.+.
T Consensus       247 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~  287 (386)
T 2ca6_A          247 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE  287 (386)
T ss_dssp             CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCC
Confidence            666 777776543     556644  888999999998754

>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B

Probab=99.27  E-value=1.5e-11  Score=101.97  Aligned_cols=66  Identities=11%  Similarity=0.088  Sum_probs=59.4

Q ss_pred             CHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         332 IPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       332 ~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      ..+.++.+|+.||.|++|+|+.+||+.++..+ +...+.+++..+|+.+|.+ +|.|+++||.++|..
T Consensus        83 ~~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~-g~~ls~~ei~~~~~~~D~~-dG~I~y~EF~~~m~~  148 (153)
T 3i5g_B           83 PEDALRNAFSMFDEDGQGFIPEDYLKDLLENM-GDNFSKEEIKNVWKDAPLK-NKQFNYNKMVDIKGK  148 (153)
T ss_dssp             CHHHHHHHHHTTCSSCSSCCCHHHHHHHHHSS-SSCCCHHHHHHHHTTCCEE-TTEECHHHHHHHHHC
T ss_pred             cHHHHHHHHhccccCCCCeEeHHHHHHHHHHc-CCcCCHHHHHHHHHHhCCC-cCEEcHHHHHHHhcC
Confidence            45678999999999999999999999999876 4566788999999999988 999999999999965

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.26  E-value=4.8e-13  Score=126.38  Aligned_cols=153  Identities=14%  Similarity=0.165  Sum_probs=110.9

Q ss_pred             CCCcccEEeccCCC-----cCcccCCCCCCCEEEccCCCCC-cCCcCccCCCCCcEEEccCC-cCCCC-CCchhhhcCCC
Q psy2947          59 YFSHAFLLSLSYTP-----IGRRIFKCDTVEVLSLKSNSLT-SLPPDIGRLTNLRVLCLTDN-CLQNA-SIPFTLTFCKN  130 (441)
Q Consensus        59 ~l~~L~~l~l~~n~-----i~~~~~~l~~L~~L~l~~n~l~-~lp~~~~~l~~L~~L~l~~n-~l~~~-~~p~~~~~l~~  130 (441)
                      .+++|+.|++++|.     +|..+..+++|++|+|++|.++ ..|..++.+++|++|++++| .++ + .+|..+..+++
T Consensus        91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~-~~~l~~~~~~~~~  169 (336)
T 2ast_B           91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFS-EFALQTLLSSCSR  169 (336)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCC-HHHHHHHHHHCTT
T ss_pred             cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCC-HHHHHHHHhcCCC
Confidence            36888999999884     4455778889999999999888 66777888999999999998 565 2 26666788899


Q ss_pred             CCEEEccCC-CCCc--cchhhcCCC-CCCEEEccCCcCccCcccccccccccccccccchhHHH-Hhhcc-c-ccCCchh
Q psy2947         131 LTHLYLDNN-LLDA--LPGFLLSMP-QLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQK-K-LHQPSRL  203 (441)
Q Consensus       131 L~~L~l~~n-~l~~--lp~~~~~l~-~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~-~-~~~p~~l  203 (441)
                      |++|++++| .++.  ++..+..++ +|+.|++++|.+....      ..+|..+..++.+..+ +.+|. + ...+..+
T Consensus       170 L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~------~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l  243 (336)
T 2ast_B          170 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK------SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF  243 (336)
T ss_dssp             CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH------HHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG
T ss_pred             CCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCH------HHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH
Confidence            999999999 8864  677778888 8999999988521110      2334445555555555 56665 3 2445567


Q ss_pred             hhhhhhccccccccc
Q psy2947         204 QDLAVQSVIASKENF  218 (441)
Q Consensus       204 ~~l~~l~~l~l~~n~  218 (441)
                      ..+++|+.|++++|.
T Consensus       244 ~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          244 FQLNYLQHLSLSRCY  258 (336)
T ss_dssp             GGCTTCCEEECTTCT
T ss_pred             hCCCCCCEeeCCCCC
Confidence            777777777777764

>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7

Probab=99.26  E-value=1.5e-11  Score=95.09  Aligned_cols=84  Identities=18%  Similarity=0.314  Sum_probs=67.9

Q ss_pred             ccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHH
Q psy2947         351 LSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFV  430 (441)
Q Consensus       351 i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~  430 (441)
                      ++++++.+.+......  ..+.++.+|+.+|.+++|.|+.+||+.+++.+|..+++++++.++..+|.|++|.|+|+||+
T Consensus         6 ~~~~~~~~~l~~~~~~--~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~e~~~l~~~~d~~~~g~i~~~eF~   83 (105)
T 1wlz_A            6 TADRDILARLHKAVTS--HYHAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLKYPDFL   83 (105)
T ss_dssp             TCCHHHHHHHHHHHHH--THHHHHHHHHHHCTTCSSCBCHHHHHHHHHHHTCCCCHHHHHHHHTTSCBCTTSCBCHHHHH
T ss_pred             hhHHHHHHHHHHHHHc--hHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCCCCCCcHHHHH
Confidence            4455555555443221  24678899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcc
Q psy2947         431 KIACAP  436 (441)
Q Consensus       431 ~~l~~~  436 (441)
                      .++...
T Consensus        84 ~~~~~~   89 (105)
T 1wlz_A           84 SRFSSE   89 (105)
T ss_dssp             HHHC--
T ss_pred             HHHhcc
Confidence            988643

>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}

Probab=99.26  E-value=7.6e-12  Score=90.64  Aligned_cols=68  Identities=24%  Similarity=0.400  Sum_probs=62.4

Q ss_pred             hHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhccC
Q psy2947         370 PKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAPV  437 (441)
Q Consensus       370 ~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~~~  437 (441)
                      .+.++.+|+.+|.+++|.|+.+||+.+++.+|..+++++++.+++.+|.+++|.|+|+||+.++.+.+
T Consensus         6 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~   73 (77)
T 2joj_A            6 KQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYIGFDDFLDIMTEKI   73 (77)
T ss_dssp             HHHHHHHHHHHCCSSSSEEEHHHHHHHHHHHTCCCHHHHHHHHHHHHCCSSSSEEEHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHhCCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHh
Confidence            35678899999999999999999999999999999999999999999999999999999999987543

>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B

Probab=99.25  E-value=3e-11  Score=101.56  Aligned_cols=67  Identities=19%  Similarity=0.245  Sum_probs=59.8

Q ss_pred             HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      .+.+..+|+.+|.|++|.|+.+||..++... +.....+++..+|+.+|.|++|.|+++||..++...
T Consensus        94 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~-g~~~~~~~~~~~~~~~D~d~dg~I~~~eF~~~~~~~  160 (166)
T 2mys_B           94 EDVIMGAFKVLDPDGKGSIKKSFLEELLTTG-GGRFTPEEIKNMWAAFPPDVAGNVDYKNICYVITHG  160 (166)
T ss_pred             HHHHHHHHHHhCCCCCcceeHHHHHHHHHHc-CCCCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHHhc
Confidence            4668889999999999999999999999876 445667889999999999999999999999999763

>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A

Probab=99.25  E-value=1.9e-11  Score=91.54  Aligned_cols=68  Identities=22%  Similarity=0.372  Sum_probs=62.7

Q ss_pred             hHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhccC
Q psy2947         370 PKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAPV  437 (441)
Q Consensus       370 ~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~~~  437 (441)
                      ...++.+|+.+|.+++|.|+.+||+.+++.+|..+++++++.+++.+|.|++|.|+|+||+.++.+.+
T Consensus        19 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~~D~~~dg~i~~~eF~~~~~~~~   86 (90)
T 1avs_A           19 IAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQM   86 (90)
T ss_dssp             HHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTCCSSEEHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHHh
Confidence            35678899999999999999999999999999999999999999999999999999999999987653

>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein, solution structure, backbone dynamic, structural genomics; NMR {Homo sapiens}

Probab=99.24  E-value=8.2e-12  Score=88.88  Aligned_cols=66  Identities=27%  Similarity=0.548  Sum_probs=61.5

Q ss_pred             hHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         370 PKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       370 ~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      .+.++.+|+.+|.+++|.|+.+||+.+++.+|..+++++++.+++.+|.+++|.|+|+||+.++.+
T Consensus         5 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~   70 (71)
T 2b1u_A            5 LEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNYEEFARMLAQ   70 (71)
T ss_dssp             HHHHHHHHTTSCCSSSSEEEHHHHHHHGGGTTCSSCHHHHHHHHHHCCSSSSSEEETTHHHHHHTC
T ss_pred             HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhh
Confidence            567889999999999999999999999999999999999999999999999999999999998854

>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic, ER, golgi, transport, disulfide bond, endopla reticulum, ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A 3lcp_C

Probab=99.24  E-value=4.3e-12  Score=103.97  Aligned_cols=96  Identities=10%  Similarity=0.044  Sum_probs=50.8

Q ss_pred             HHHHHHHhCCCcccHHHHHHHHHhhcC----CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhcc-------CCCCh
Q psy2947         302 ELKKYLAEKGGKLSFPDFLKVMHTHSK----AEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSK-------AEDIP  370 (441)
Q Consensus       302 ~~~~~~~~~~g~i~~~ef~~~~~~~~~----~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~-------~~~~~  370 (441)
                      .+..++.+++|.|+++||..++.....    .....+.++.+|+.||.|++|.|+++||..++.....       .....
T Consensus        32 ~f~~~D~d~dG~I~~~Ef~~~l~~~~~~~~~~~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~g~~~s~  111 (143)
T 3a4u_B           32 QPGSMGLDKNTVHDQEHIMEHLEGVINKPEAEMSPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSE  111 (143)
T ss_dssp             -------------------------------CCCHHHHHHHHHHHTCTTCSSCEEHHHHHHTCC-------------CCH
T ss_pred             HHHHhCCCCCCcCcHHHHHHHHHHHhcccccccCHHHHHHHHHHHhCCCCCCccCHHHHHHHHHHHHhhhccccCCCCCH
Confidence            455566788999999999988875532    1234578999999999999999999999998876531       23334


Q ss_pred             HHH----HHHHHHhCCCCCCcccHHHHHHHH
Q psy2947         371 KEV----VDAFKAADTTKSGTVPAKYLKHVL  397 (441)
Q Consensus       371 ~~~----~~~f~~~D~~~~G~is~~ef~~~l  397 (441)
                      +++    +.+|+.+|.|+||.|+++||..++
T Consensus       112 ~e~~~~~~~~f~~~D~d~dG~Is~~EF~~~~  142 (143)
T 3a4u_B          112 DELINIIDGVLRDDDKNNDGYIDYAEFAKSL  142 (143)
T ss_dssp             HHHHHHHHHHHHHHCTTCSSEECHHHHHC--
T ss_pred             HHHHHHHHHHHHHcCCCCCCcEeHHHHHHHH
Confidence            455    556699999999999999998876

>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein; HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A

Probab=99.24  E-value=2.1e-11  Score=105.06  Aligned_cols=100  Identities=12%  Similarity=0.111  Sum_probs=79.1

Q ss_pred             HHHHHHHHhhcCCCCCcccHHHHH-----HHHHhhccCCCChH-----HHHHHHHHhCCCCCCcccHHHHHHHHHHhCC-
Q psy2947         334 KEVVDAFKAADTTKSGKLSFPDFL-----KVMHTHSKAEDIPK-----EVVDAFKAADTTKSGTVPAKYLKHVLVNWGE-  402 (441)
Q Consensus       334 ~~~~~~f~~~D~d~~g~i~~~ef~-----~~~~~~~~~~~~~~-----~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~-  402 (441)
                      .+++.+|+.+|.|++|.|+.+||.     .++..+. ......     .+..+|+.+|.+++|.|+++||..++..... 
T Consensus        16 ~~l~~~F~~~D~d~~G~i~~~El~~~~~~~~l~~~g-~~~~~~~~~~~~~~~l~~~~D~d~~g~i~~~EF~~~~~~~~~~   94 (191)
T 1uhk_A           16 GRHKHMFNFLDVNHNGKISLDEMVYKASDIVINNLG-ATPEQAKRHKDAVEAFFGGAGMKYGVETDWPAYIEGWKKLATD   94 (191)
T ss_dssp             HHHHHHHHHHCTTCCSEEEHHHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHTTCCTTCEEEHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccCCCCCcCcHHHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHHHHhCcCCCCcCcHHHHHHHHHHHhcc
Confidence            568899999999999999999999     5665542 222233     5888999999999999999999998875311 


Q ss_pred             ------CCCHHHHH----HHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         403 ------GLSSKEVD----QIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       403 ------~l~~~~~~----~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                            ....+.++    .+|+.+|.|++|.|+.+||..++.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~  136 (191)
T 1uhk_A           95 ELEKYAKNEPTLIRIWGDALFDIVDKDQNGAITLDEWKAYTK  136 (191)
T ss_dssp             HHHHHHTTCCCHHHHHHHHHHHHHCTTCSSEECHHHHHHHHH
T ss_pred             hhhhhhhhhHHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHH
Confidence                  11112233    899999999999999999998874

>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens} SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B* 1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C

Probab=99.23  E-value=5.1e-12  Score=104.50  Aligned_cols=101  Identities=19%  Similarity=0.187  Sum_probs=84.8

Q ss_pred             HHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCC--CCCcccHHHHHHHHHHhCC---CCCHHH
Q psy2947         334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTT--KSGTVPAKYLKHVLVNWGE---GLSSKE  408 (441)
Q Consensus       334 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~--~~G~is~~ef~~~l~~~~~---~l~~~~  408 (441)
                      .+++.+|+.+|.|++|.|+.+||..++..+ ......+.+..+|+.+|.+  ++|.|+++||..++.....   +-..+.
T Consensus        10 ~~l~~~F~~~D~d~~G~i~~~el~~~l~~~-g~~~~~~~~~~l~~~~d~~~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~   88 (151)
T 1w7j_B           10 EEFKEAFELFDRVGDGKILYSQCGDVMRAL-GQNPTNAEVLKVLGNPKSDELKSRRVDFETFLPMLQAVAKNRGQGTYED   88 (151)
T ss_dssp             -CHHHHHHHHCCSSSSEEESTTHHHHHHHT-TCCCCHHHHHHHTTCCCHHHHTTCEEEHHHHHHHHHHHCC--------C
T ss_pred             HHHHHHHHHHCCCCCCcCcHHHHHHHHHHc-CCCCCHHHHHHHHHHhCcCcCCCCcCcHHHHHHHHHHHhccCCCCcHHH
Confidence            458899999999999999999999999876 3445578899999999999  9999999999999987642   123456


Q ss_pred             HHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         409 VDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       409 ~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      +..+|+.+|.|++|.|+.+||..++..
T Consensus        89 l~~~F~~~D~d~~G~I~~~el~~~l~~  115 (151)
T 1w7j_B           89 YLEGFRVFDKEGNGKVMGAELRHVLTT  115 (151)
T ss_dssp             CHHHHHTTCTTSSSEEEHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence            788999999999999999999998854

>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10

Probab=99.23  E-value=1.9e-11  Score=88.73  Aligned_cols=64  Identities=22%  Similarity=0.397  Sum_probs=52.7

Q ss_pred             HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         371 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       371 ~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      ++++.+|+.+|.+++|.|+.+||+.+++.+| .+++++++.+++.+|.|++|.|+|+||+.++.+
T Consensus         3 ~~l~~~F~~~D~~~~G~i~~~el~~~l~~~g-~~~~~~~~~~~~~~D~~~dg~i~~~ef~~~~~~   66 (78)
T 1k9u_A            3 DDMERIFKRFDTNGDGKISLSELTDALRTLG-STSADEVQRMMAEIDTDGDGFIDFNEFISFCNA   66 (78)
T ss_dssp             CHHHHHHHHHCTTCSSEECHHHHHHHHHHHH-TCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCCcCcHHHHHHHHHHhC-CCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHH
Confidence            4577788888888888888888888888888 788888888888888888888888888887754

>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR {Homo sapiens} PDB: 2l4i_A 2lm5_A

Probab=99.23  E-value=2.2e-11  Score=107.15  Aligned_cols=139  Identities=18%  Similarity=0.292  Sum_probs=114.6

Q ss_pred             eecccchHHHHHhhhcccc--------C--CCccCHHHHHHHHHHcCCCcCHHHHHHHH-HhCCCc-ccHHHHHHHHHhh
Q psy2947         259 FTFKTPYLEFRECFFLFAR--------N--GTIKTLDELSVIMRSLGMSPTIAELKKYL-AEKGGK-LSFPDFLKVMHTH  326 (441)
Q Consensus       259 ~l~~~~~~~l~~~f~~~d~--------~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~-~~~~g~-i~~~ef~~~~~~~  326 (441)
                      .++..++..+.+.|..+|.        +  |.| +.+|+.. +..++..+...++...+ .+++|. |+++||+.++...
T Consensus        44 ~~s~~ei~~l~~~F~~~D~~~~~~d~~~~dG~I-~~~E~~~-l~~lg~~~~~~~lf~~~D~d~dG~~I~f~EF~~~~~~~  121 (214)
T 2l4h_A           44 FLTKQEILLAHRRFCELLPQEQRSVESSLRAQV-PFEQILS-LPELKANPFKERICRVFSTSPAKDSLSFEDFLDLLSVF  121 (214)
T ss_dssp             SCCHHHHHHHHHHHHHHSCGGGCCHHHHTTSEE-CHHHHTT-CHHHHTSTTHHHHHHHHCCSSSCCSEEHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHhCcccccccccccCCcC-CHHHHHH-hhccCCChHHHHHHHHhCcCCCCCEecHHHHHHHHHHH
Confidence            4567788888999999887        6  999 8999998 88888888777665555 468999 9999999999877


Q ss_pred             cCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhcc----CCCChHHHH----HHHHHhCCCCCCcccHHHHHHHHH
Q psy2947         327 SKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSK----AEDIPKEVV----DAFKAADTTKSGTVPAKYLKHVLV  398 (441)
Q Consensus       327 ~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~----~~~~~~~~~----~~f~~~D~~~~G~is~~ef~~~l~  398 (441)
                      .......+.++.+|+.||.|++|.|+.+||..++.....    .....++++    .+|+.+|.|++|.|+++||..++.
T Consensus       122 ~~~~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~~~~~~~~~~s~~e~~~~~~~~~~~~D~d~dG~Is~~EF~~~~~  201 (214)
T 2l4h_A          122 SDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQHVIS  201 (214)
T ss_dssp             SSCSCHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHHHHSSSCTTCSCTHHHHHHHHHHHHHCCSCCSSBCSHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHH
Confidence            655455779999999999999999999999999987643    123334444    599999999999999999999986


Q ss_pred             H
Q psy2947         399 N  399 (441)
Q Consensus       399 ~  399 (441)
                      .
T Consensus       202 ~  202 (214)
T 2l4h_A          202 R  202 (214)
T ss_dssp             T
T ss_pred             h
Confidence            4

>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin crosslinking, ionized calciu binding adapter molecule 2, metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B 2vtg_A

Probab=99.22  E-value=1.6e-11  Score=101.55  Aligned_cols=85  Identities=9%  Similarity=0.113  Sum_probs=46.6

Q ss_pred             HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHH
Q psy2947         333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQI  412 (441)
Q Consensus       333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l  412 (441)
                      .++++.+|+.||.|++|.|+.+||..++... ......++++.+|+.+|.+++|.|+++||..++...     .+++..+
T Consensus        49 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~-g~~~~~~e~~~l~~~~D~d~dg~I~~~eF~~~~~~~-----~~~i~~a  122 (150)
T 2jjz_A           49 LTAFKEKYMEFDLNNEGEIDLMSLKRMMEKL-GVPKTHLEMKKMISEVTGGVSDTISYRDFVNMMLGK-----RSAVLKL  122 (150)
T ss_dssp             HHHHHHHHTTSCCCTTSSBCHHHHHHHHHHT-TCCCCHHHHHHHHHHHHTTSCSSBCHHHHHHHHHSS-----SCCHHHH
T ss_pred             HHHHHHHHHHhCCCCcCcCCHHHHHHHHHHc-CCCCCHHHHHHHHHHHCCCCCCcEeHHHHHHHHHHh-----HHHHHHH
Confidence            3556666666666666666666666666554 223345566666666666666666666666666542     2335566


Q ss_pred             HHHhCCCCCCc
Q psy2947         413 FREANVTMNSK  423 (441)
Q Consensus       413 ~~~~d~d~dg~  423 (441)
                      |+.+|.+++|.
T Consensus       123 F~~~D~d~~G~  133 (150)
T 2jjz_A          123 VMMFEGKANES  133 (150)
T ss_dssp             HHC--------
T ss_pred             HHHHcCCCCCC
Confidence            66666666664

>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A

Probab=99.22  E-value=2.5e-11  Score=94.17  Aligned_cols=65  Identities=11%  Similarity=0.270  Sum_probs=52.5

Q ss_pred             HHHHHHHHHhC-CCCCC-cccHHHHHHHHHH-----hCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         371 KEVVDAFKAAD-TTKSG-TVPAKYLKHVLVN-----WGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       371 ~~~~~~f~~~D-~~~~G-~is~~ef~~~l~~-----~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      ++++.+|+.|| +|++| +|+.+||+.+++.     +|..+++++++.+++.+|.|+||.|+|+||+.+|.+
T Consensus        22 ~~l~~aF~~fD~~dgdGG~Is~~EL~~~l~~~l~~~lg~~~t~~ev~~li~~~D~dgdG~Idf~EF~~~m~~   93 (113)
T 2lnk_A           22 DVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSC   93 (113)
T ss_dssp             HHHHHHHHHTTTTTSCTTCBCHHHHHHHHHHHCGGGGTTCCCTTHHHHHHHHHCSSSSSCBCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccCCCCCEECHHHHHHHHHHHcchhcCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHH
Confidence            46777888888 78886 8888888888876     666677888888888888888888888888887743

>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR {Schizosaccharomyces pombe} SCOP: a.39.1.5

Probab=99.22  E-value=2.7e-11  Score=98.74  Aligned_cols=96  Identities=11%  Similarity=0.077  Sum_probs=81.4

Q ss_pred             HHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCC---CCHHHHH
Q psy2947         334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEG---LSSKEVD  410 (441)
Q Consensus       334 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~---l~~~~~~  410 (441)
                      .+++.+|+.+|.|++|.|+.+||..++..+. .....+.+..+|.    +++|.|+++||..++......   -..+.+.
T Consensus         5 ~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g-~~~~~~~~~~~~~----~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~   79 (140)
T 1ggw_A            5 SPYKQAFSLFDRHGTGRIPKTSIGDLLRACG-QNPTLAEITEIES----TLPAEVDMEQFLQVLNRPNGFDMPGDPEEFV   79 (140)
T ss_dssp             TTTHHHHHHTCSSSSSEECHHHHHHHHHHTS-CCCCHHHHHHHHT----TSCSSEEHHHHHHHHCTTSSSSSSCCHHHHH
T ss_pred             HHHHHHHHHHCCCCCCcCCHHHHHHHHHHcC-CCCCHHHHHHHHh----CCCCcCcHHHHHHHHHHHhcccCcccHHHHH
Confidence            4578999999999999999999999998873 3445677777776    899999999999999775432   2348899


Q ss_pred             HHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         411 QIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       411 ~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      .+|+.+|.|++|.|+.+||..++.
T Consensus        80 ~~F~~~D~d~~G~i~~~el~~~l~  103 (140)
T 1ggw_A           80 KGFQVFDKDATGMIGVGELRYVLT  103 (140)
T ss_dssp             HHHHTTCSSCSSCCCHHHHHHHHH
T ss_pred             HHHHHhCCCCCCcEeHHHHHHHHH
Confidence            999999999999999999999875

>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}

Probab=99.22  E-value=4.5e-11  Score=89.83  Aligned_cols=65  Identities=38%  Similarity=0.701  Sum_probs=44.9

Q ss_pred             HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         371 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       371 ~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      +.++.+|+.+|.+++|.|+.+||+.+++.+|..+++++++.+++.+|.|++|.|+|+||+.++.+
T Consensus         9 ~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~dg~i~~~eF~~~~~~   73 (92)
T 2kn2_A            9 EELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYEEFVKMMMT   73 (92)
T ss_dssp             HHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHCSSCCSSEEHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCCeEcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHh
Confidence            45666677777777777777777777777666667777777777777777777777777766644

>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens}

Probab=99.22  E-value=3e-11  Score=92.36  Aligned_cols=65  Identities=9%  Similarity=0.211  Sum_probs=46.7

Q ss_pred             HHHHHHHHHhC-CCCC-CcccHHHHHHHHHH-hC----CCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         371 KEVVDAFKAAD-TTKS-GTVPAKYLKHVLVN-WG----EGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       371 ~~~~~~f~~~D-~~~~-G~is~~ef~~~l~~-~~----~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      ++++.+|+.|| .||+ |+|+.+||+.+|+. +|    ..+++++++.+++.+|.|+||.|+|+||+.+|.+
T Consensus        13 ~~l~~aF~~fD~~dgd~G~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~~~D~dgDG~Idf~EF~~~m~~   84 (104)
T 3zwh_A           13 DVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSWLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSS   84 (104)
T ss_dssp             HHHHHHHHHHHTSSSSTTSBCHHHHHHHHHHHCGGGSCSSCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHcchhccCCCCHHHHHHHHHHHcCCCCCCCcHHHHHHHHHH
Confidence            45667777776 5664 67888888887775 43    3456777888888888888888888888777643

>2kld_A Polycystin-2; PC2, PKD2, calcium binding domain, EF hand, cytosolic, calcium, coiled coil, disease mutation, glycoprotein, ION transport; NMR {Homo sapiens} PDB: 2kle_A 2kq6_A 2y4q_A

Probab=99.22  E-value=9.3e-13  Score=104.77  Aligned_cols=84  Identities=10%  Similarity=0.252  Sum_probs=52.0

Q ss_pred             CCcccHHHHHH-----HHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCC
Q psy2947         348 SGKLSFPDFLK-----VMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNS  422 (441)
Q Consensus       348 ~g~i~~~ef~~-----~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg  422 (441)
                      +|.|+++||..     ++..........++++.+|+.||    |+|+.+|++.+++.+|.  ++++++.+++.+|.|++|
T Consensus        22 ~g~i~f~EF~~~~~~~~~~~~~~~~~~~~~l~~aF~~fD----G~I~~~El~~~l~~lG~--t~~ei~~~~~~~D~d~dG   95 (123)
T 2kld_A           22 KAEMELSDLIRKGYHKALVKLKLKKNTVDDISESLRQGG----GKLNFDELRQDLKGKGH--TDAEIEAIFTKYDQDGDQ   95 (123)
T ss_dssp             -----------------------------CCSCSSTTTT----TCEEHHHHHHHTTTCCS--SHHHHHHHHHHHSSSSCC
T ss_pred             CCCccHHHHHhHhHHHHHHHhhcChhHHHHHHHHHHHhC----CCCCHHHHHHHHHHhCC--CHHHHHHHHHHHcCCCCC
Confidence            45555555555     33322111222345667888888    99999999999988886  889999999999999999


Q ss_pred             ceeHHHHHHHHhccC
Q psy2947         423 KVRYEDFVKIACAPV  437 (441)
Q Consensus       423 ~i~~~ef~~~l~~~~  437 (441)
                      .|+|+||+.+|....
T Consensus        96 ~I~~~EF~~~~~~~~  110 (123)
T 2kld_A           96 ELTEHEHQQMRDDLE  110 (123)
T ss_dssp             EECSHHHHHCSCTTT
T ss_pred             cCcHHHHHHHHHHHH
Confidence            999999999885543

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.22  E-value=7e-11  Score=122.30  Aligned_cols=119  Identities=10%  Similarity=0.180  Sum_probs=104.0

Q ss_pred             HhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCC-------CCCcccHHHHHHHHHhhccCCCChHHHHHHHHHh
Q psy2947         308 AEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTT-------KSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAA  380 (441)
Q Consensus       308 ~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d-------~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~  380 (441)
                      .+++|+|+++|+..++..      ..+.+..+|+.+|.+       ++|.|+++||.+++..+..    ..+++.+|+.|
T Consensus       163 ~n~dGkIs~kel~~~l~~------~~~~v~~l~~~~d~~~~~~d~~~~g~i~feEF~~f~~~l~~----R~EI~eiF~~y  232 (885)
T 3ohm_B          163 VNQDGRIPVKNILKMFSA------DKKRVETALESCGLKFNRSESIRPDEFSLEIFERFLNKLCL----RPDIDKILLEI  232 (885)
T ss_dssp             CCTTSCEEHHHHHHTTGG------GHHHHHHHHHTTTCCCSTTCEECGGGCCHHHHHHHHHHHSC----CHHHHHHHHHT
T ss_pred             cCCCCccCHHHHHHHHhc------CHHHHHHHHHHhCCCccccccCCCCcCCHHHHHHHHHhcCC----HHHHHHHHHHH
Confidence            468899999999988873      356788899999987       8899999999999987732    46899999999


Q ss_pred             CCCCCCcccHHHHHHHHHHhC-C---------CCCHHHHHHHHHHhCCC----CCCceeHHHHHHHHhcc
Q psy2947         381 DTTKSGTVPAKYLKHVLVNWG-E---------GLSSKEVDQIFREANVT----MNSKVRYEDFVKIACAP  436 (441)
Q Consensus       381 D~~~~G~is~~ef~~~l~~~~-~---------~l~~~~~~~l~~~~d~d----~dg~i~~~ef~~~l~~~  436 (441)
                      |.+++|.||.+||+++|+..+ .         .++.+++++|+++++.+    ++|.|++++|.++|...
T Consensus       233 dsd~~g~mT~~EL~~FL~~~Q~e~~~~e~~~~~~t~e~~~~iI~k~e~~~~~~~~g~LsldgF~~yL~S~  302 (885)
T 3ohm_B          233 GAKGKPYLTLEQLMDFINQKQRDPRLNEVLYPPLRPSQARLLIEKYEPNQQFLERDQMSMEGFSRYLGGE  302 (885)
T ss_dssp             TCCSTTCEEHHHHHHHHHHHSSCTTSCTTTSCCCCHHHHHHHHHHHCCCHHHHHTTEECHHHHHHHHTST
T ss_pred             hcCCCCccCHHHHHHHHHHhcCcccccccccccCCHHHHHHHHHHhcCChhhhccCccchhhhhhhccCc
Confidence            999999999999999999975 3         37889999999999988    78999999999999754

>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural genomics, PSI-B protein structure initiative, NEW YORK structural genomics consortium; 1.54A {Homo sapiens} PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*

Probab=99.21  E-value=2.9e-11  Score=90.70  Aligned_cols=65  Identities=9%  Similarity=0.208  Sum_probs=51.1

Q ss_pred             HHHHHHHHHhC-CCCC-CcccHHHHHHHHHH-hC----CCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         371 KEVVDAFKAAD-TTKS-GTVPAKYLKHVLVN-WG----EGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       371 ~~~~~~f~~~D-~~~~-G~is~~ef~~~l~~-~~----~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      +.++.+|+.|| .||+ |+|+.+||+++++. +|    .+.++++++.+++.+|.|+||.|+|+||+.+|.+
T Consensus        10 ~~l~~~F~~fd~~dg~~G~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~~~D~d~DG~Idf~EF~~~~~~   81 (93)
T 4eto_A           10 DVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSC   81 (93)
T ss_dssp             HHHHHHHHHHHTSSSSTTSBCHHHHHHHHHHHCGGGC---CCHHHHHHHHHHHCTTSSSSBCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccCCCCCeECHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHCCCCCCCCcHHHHHHHHHH
Confidence            46778888887 5774 78999999888885 44    3457888888999999888999999999888754

>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica}

Probab=99.21  E-value=6e-12  Score=88.20  Aligned_cols=62  Identities=18%  Similarity=0.237  Sum_probs=55.2

Q ss_pred             HHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         374 VDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       374 ~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      +.+|+.+|.|++|.|+.+||+.+++.+|..+++++++.+|+.+|.|++|.|+|+||+.++.+
T Consensus         3 ~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~ef~~~~~~   64 (66)
T 3li6_A            3 EALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYGS   64 (66)
T ss_dssp             CHHHHHHCTTCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHTC
T ss_pred             HHHHHHHCCCCCCcccHHHHHHHHHHccCCCcHHHHHHHHHHHCCCCCCCCCHHHHHHHHHh
Confidence            46899999999999999999999998887788888999999999999999999999988864

>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*

Probab=99.20  E-value=2.8e-11  Score=104.61  Aligned_cols=100  Identities=9%  Similarity=0.107  Sum_probs=74.2

Q ss_pred             HHHHHHHHhhcCCCCCcccHHHHH-----HHHHhhccCCCChH-----HHHHHHHHhCCCCCCcccHHHHHHHHHHhCC-
Q psy2947         334 KEVVDAFKAADTTKSGKLSFPDFL-----KVMHTHSKAEDIPK-----EVVDAFKAADTTKSGTVPAKYLKHVLVNWGE-  402 (441)
Q Consensus       334 ~~~~~~f~~~D~d~~g~i~~~ef~-----~~~~~~~~~~~~~~-----~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~-  402 (441)
                      ..++.+|+.+|.|++|.|+.+||.     .++..+. ......     .+..+|+.+|.+++|.|+++||..++..... 
T Consensus        20 ~~l~~~F~~~D~d~~G~i~~~El~~~~~~~~l~~~g-~~~~~~~~~~~~~~~l~~~~D~d~~g~i~~~EF~~~~~~~~~~   98 (195)
T 1qv0_A           20 KRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLE-ATPEQTKRHQVCVEAFFRGCGMEYGKEIAFPQFLDGWKQLATS   98 (195)
T ss_dssp             HHHHHHHHHHCTTCSSCBCHHHHHHHHHHTHHHHTT-CCHHHHHHHHHHHHHHHHHTTCCTTCCBCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHcCCCCCCcCcHHHHHHHHHHHHHHHcC-CCccHHHHHHHHHHHHHHHcCCCCCceEcHHHHHHHHHHHHhh
Confidence            467889999999999999999999     4555542 222222     5888999999999999999999998865321 


Q ss_pred             ------CCCHHHHH----HHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         403 ------GLSSKEVD----QIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       403 ------~l~~~~~~----~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                            .-..+.++    .+|+.+|.|++|.|+.+||..++.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~  140 (195)
T 1qv0_A           99 ELKKWARNEPTLIREWGDAVFDIFDKDGSGTITLDEWKAYGK  140 (195)
T ss_dssp             HHHHHHTTCCCHHHHHHHHHHHHTC----CEECHHHHHHHHH
T ss_pred             hhhcccccHHHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHH
Confidence                  01112233    899999999999999999999885

>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*

Probab=99.20  E-value=3.1e-11  Score=103.30  Aligned_cols=139  Identities=18%  Similarity=0.289  Sum_probs=116.7

Q ss_pred             eecccchHHHHHhhhcccc--------C--CCccCHHHHHHHHHHcCCCcCHHHHHHHH-HhCCCc-ccHHHHHHHHHhh
Q psy2947         259 FTFKTPYLEFRECFFLFAR--------N--GTIKTLDELSVIMRSLGMSPTIAELKKYL-AEKGGK-LSFPDFLKVMHTH  326 (441)
Q Consensus       259 ~l~~~~~~~l~~~f~~~d~--------~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~-~~~~g~-i~~~ef~~~~~~~  326 (441)
                      .++..++..+.+.|..+|.        +  |.| +..++.. ++.++..++..++..++ .+++|. |+++||..++...
T Consensus        13 ~ls~~~~~~l~~~F~~~D~~~~~~~~~~~~G~i-~~~el~~-l~~~g~~~~~~~l~~~~D~d~~G~~I~~~EF~~~~~~~   90 (183)
T 1dgu_A           13 FLTKQEILLAHRRFCELLPQEQRSVESSLRAQV-PFEQILS-LPELKANPFKERICRVFSTSPAKDSLSFEDFLDLLSVF   90 (183)
T ss_dssp             SCCHHHHHHHHHHHHHHSCSTTCSSCCCTTTCS-CHHHHHT-STTSSSCTTHHHHHHHHSCSSSSCCCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCccccccccccccCcC-cHHHHHH-HHhhhcCcHHHHHHHHhCCCCCCCEecHHHHHHHHHHh
Confidence            4678889999999999987        5  889 8999999 88888888877766655 478999 9999999999877


Q ss_pred             cCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhcc----CCCChHHHHH----HHHHhCCCCCCcccHHHHHHHHH
Q psy2947         327 SKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSK----AEDIPKEVVD----AFKAADTTKSGTVPAKYLKHVLV  398 (441)
Q Consensus       327 ~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~----~~~~~~~~~~----~f~~~D~~~~G~is~~ef~~~l~  398 (441)
                      .......+.++.+|+.||.|++|.|+.+||..++.....    .....+++..    +|+.+|.|++|.|+++||..++.
T Consensus        91 ~~~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~  170 (183)
T 1dgu_A           91 SDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQHVIS  170 (183)
T ss_dssp             STTCCHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHHCTTSSSEEEHHHHHHHHC
T ss_pred             cCCCCHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHH
Confidence            655555679999999999999999999999999987643    1233455554    99999999999999999999986


Q ss_pred             H
Q psy2947         399 N  399 (441)
Q Consensus       399 ~  399 (441)
                      .
T Consensus       171 ~  171 (183)
T 1dgu_A          171 R  171 (183)
T ss_dssp             S
T ss_pred             h
Confidence            4

>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...

Probab=99.19  E-value=7.5e-11  Score=98.02  Aligned_cols=66  Identities=15%  Similarity=0.170  Sum_probs=58.8

Q ss_pred             CHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         332 IPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       332 ~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      ..+.+..+|+.+|.|++|.|+.+||+.++... +.....+++..+|+.+|.+ +|.|+++||.+++..
T Consensus        85 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~-g~~~~~~~~~~~~~~~d~~-dg~i~~~eF~~~~~~  150 (156)
T 1wdc_B           85 SEETIRNAFAMFDEQETKKLNIEYIKDLLENM-GDNFNKDEMRMTFKEAPVE-GGKFDYVKFTAMIKG  150 (156)
T ss_dssp             CHHHHHHHHHTTCTTCCSCEEHHHHHHHHHHS-SSCCCHHHHHHHHHHCCEE-TTEECHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHCcCCCCccCHHHHHHHHHHh-CCCCCHHHHHHHHHhcCCC-CCEEeHHHHHHHHhc
Confidence            34668889999999999999999999999876 4456678999999999999 999999999999975

>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A

Probab=99.19  E-value=4.7e-11  Score=88.46  Aligned_cols=65  Identities=22%  Similarity=0.377  Sum_probs=51.7

Q ss_pred             HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhcc
Q psy2947         371 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAP  436 (441)
Q Consensus       371 ~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~~  436 (441)
                      +.++.+|+.+|.+++|.|+.+||+.+++.+| .+++++++.+++.+|.|++|.|+|+||+.++.+.
T Consensus        11 ~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g-~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~~   75 (86)
T 2opo_A           11 ADRERIFKRFDTNGDGKISSSELGDALKTLG-SVTPDEVRRMMAEIDTDGDGFISFDEFTDFARAN   75 (86)
T ss_dssp             HHHHHHHHHHCTTCSSEEEHHHHHHHHHTTT-TCCHHHHHHHHHHHCTTCSSEECHHHHHHHHHHC
T ss_pred             HHHHHHHHHHCCCCCCCcCHHHHHHHHHHcC-CCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHC
Confidence            4567778888888888888888888888877 7788888888888888888888888888777543

>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A

Probab=99.18  E-value=2.2e-11  Score=89.11  Aligned_cols=67  Identities=22%  Similarity=0.349  Sum_probs=61.1

Q ss_pred             ChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhcc
Q psy2947         369 IPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWG-EGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAP  436 (441)
Q Consensus       369 ~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~-~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~~  436 (441)
                      ..+.++ +|+.+|.+++|.|+.+||+.+++.+| ..+++++++.+++.+|.|++|.|+|+||+.++.+.
T Consensus         7 ~~~~l~-~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~~   74 (81)
T 1c7v_A            7 EEEILR-AFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDIPEFMDLIKKS   74 (81)
T ss_dssp             CHHHHH-HHHHHSCSGGGEECHHHHHHHSSTTTTCCCCHHHHHHHHHHHCSSGGGSEEHHHHHHHHHCC
T ss_pred             HHHHHH-HHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHhh
Confidence            357788 99999999999999999999999999 88999999999999999999999999999988765

>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB: 2scp_A

Probab=99.18  E-value=5.4e-11  Score=100.73  Aligned_cols=100  Identities=10%  Similarity=0.162  Sum_probs=81.4

Q ss_pred             HHHHHHHHhhcCCCCCcccHHHHHHHHHhhcc---CCCChHH-H--------HHHHHHhCCCCCCcccHHHHHHHHHHhC
Q psy2947         334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTHSK---AEDIPKE-V--------VDAFKAADTTKSGTVPAKYLKHVLVNWG  401 (441)
Q Consensus       334 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~---~~~~~~~-~--------~~~f~~~D~~~~G~is~~ef~~~l~~~~  401 (441)
                      .+++.+|+.+|.|++|.|+.+||..++.....   ......+ +        +.+|+.+|  ++|.|+++||..++....
T Consensus         6 ~~l~~~F~~~D~d~~G~i~~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~D--~~g~i~~~EF~~~~~~~~   83 (174)
T 1q80_A            6 QKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVA--GGKGIDETTFINSMKEMV   83 (174)
T ss_dssp             HHHHHHHHHHCTTCSSEESHHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHTGGGTT--TTSCEEHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCCCCCcEeHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHhcC--CCCeEcHHHHHHHHHHHc
Confidence            56889999999999999999999999887641   2333334 4        45788899  999999999999998764


Q ss_pred             CC-----CCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         402 EG-----LSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       402 ~~-----l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      ..     ...+.+..+|+.+|.|++|.|+.+||..++..
T Consensus        84 ~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~  122 (174)
T 1q80_A           84 KNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGM  122 (174)
T ss_dssp             TSTTCHHHHHTHHHHHHHHHCTTSSSSBCHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Confidence            31     12467889999999999999999999998753

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.17  E-value=6.3e-13  Score=115.61  Aligned_cols=134  Identities=14%  Similarity=0.215  Sum_probs=106.5

Q ss_pred             cCcccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEccCCCCCccchhhcCCC
Q psy2947          73 IGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMP  152 (441)
Q Consensus        73 i~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~  152 (441)
                      +|..+..+++|++|++++|.++.+| .+..+++|+.|++++|.++  .+|..+..+++|++|++++|+++.+| .+..++
T Consensus        40 l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~  115 (198)
T 1ds9_A           40 MDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQIASLS-GIEKLV  115 (198)
T ss_dssp             CHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC--SCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHH
T ss_pred             hhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc--cccchhhcCCcCCEEECcCCcCCcCC-ccccCC
Confidence            4447888999999999999999998 8999999999999999998  89988888899999999999999988 588899


Q ss_pred             CCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCc-----------hhhhhhhhcccccccccCC
Q psy2947         153 QLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPS-----------RLQDLAVQSVIASKENFFE  220 (441)
Q Consensus       153 ~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~-----------~l~~l~~l~~l~l~~n~~~  220 (441)
                      +|+.|++++|++.....        ...+..++.+..+ +.+|.+...++           .+..++.|+.++  ++++.
T Consensus       116 ~L~~L~l~~N~i~~~~~--------~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          116 NLRVLYMSNNKITNWGE--------IDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HSSEEEESEEECCCHHH--------HHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CCCEEECCCCcCCchhH--------HHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            99999999999743221        1245556666656 66676644322           267777887775  55544

>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A 1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X* 3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A* 3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...

Probab=99.17  E-value=7.2e-11  Score=88.62  Aligned_cols=64  Identities=16%  Similarity=0.330  Sum_probs=56.3

Q ss_pred             HHHHHHHHHhCCCCCC---cccHHHHHHHHHH-----hCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         371 KEVVDAFKAADTTKSG---TVPAKYLKHVLVN-----WGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       371 ~~~~~~f~~~D~~~~G---~is~~ef~~~l~~-----~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      +.++.+|+.|| +++|   +|+.+||+.+++.     +|..+++++++.+++.+|.|+||.|+|+||+.++.+
T Consensus         9 ~~l~~~F~~~D-~~dG~~g~Is~~EL~~~l~~~~~~~lg~~~~~~~v~~~~~~~D~d~dG~I~f~EF~~~~~~   80 (92)
T 3rm1_A            9 VALIDVFHQYS-GREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSNGDGECDFQEFMAFVAM   80 (92)
T ss_dssp             HHHHHHHHHHH-TSSSSTTSBCHHHHHHHHHHHCTTTSCCCCSHHHHHHHHHHHCTTSSSSBCHHHHHHHHHH
T ss_pred             HHHHHHHHHHc-cCCCCcCeECHHHHHHHHHHHhhhhccCcccHHHHHHHHHHHcCCCCCCCcHHHHHHHHHH
Confidence            46778999999 6666   9999999999998     888889999999999999999999999999988754

>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6

Probab=99.17  E-value=6.7e-11  Score=88.83  Aligned_cols=62  Identities=16%  Similarity=0.289  Sum_probs=54.5

Q ss_pred             HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         371 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       371 ~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      ++++.+|+.+|+|++|+|+.+|++.+++..|  +++++++.+++.+|.|++|.|+|+||+.+|.
T Consensus         9 ~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g--~~~~~~~~i~~~~D~d~dG~i~~~EF~~~~~   70 (92)
T 1fi6_A            9 QYYVNQFKTIQPDLNGFIPGSAAKEFFTKSK--LPILELSHIWELSDFDKDGALTLDEFCAAFH   70 (92)
T ss_dssp             HHHHHHHTTTCCSTTCEEEHHHHHHHHHHHS--SCHHHHHHHHHHHCTTCSSEEEHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
Confidence            4677889999999999999999999998887  7788899999999999999999999998773

>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein, EF-hand, calcium regulation, oligomer neuronal development, spine2; 2.03A {Danio rerio}

Probab=99.17  E-value=7.9e-11  Score=89.54  Aligned_cols=65  Identities=15%  Similarity=0.285  Sum_probs=52.0

Q ss_pred             HHHHHHHHHhC-CCCCC-cccHHHHHHHHHH-----hCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         371 KEVVDAFKAAD-TTKSG-TVPAKYLKHVLVN-----WGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       371 ~~~~~~f~~~D-~~~~G-~is~~ef~~~l~~-----~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      +.++.+|+.|| .|++| +|+.+||+.+++.     +|..+++++++.+++.+|.|+||.|+|+||+.++.+
T Consensus        10 ~~l~~~F~~fDd~dg~gG~I~~~El~~~l~~~~~~~lg~~~~~~~v~~l~~~~D~d~dG~I~f~EF~~~~~~   81 (99)
T 2y5i_A           10 DALITVFHNYSGSEGDKYKLSKGELKELLNAELTDFLMSQKDPMLVEKIMNDLDSNKDNEVDFNEFVVLVAA   81 (99)
T ss_dssp             HHHHHHHHHHHTSSSSTTEECHHHHHHHHHHHSGGGGTTSCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCcCcCCHHHHHHHHHHHhhhhccccccHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence            46777888886 78877 8888888888876     566678888888888888888888888888887754

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.16  E-value=1e-10  Score=110.94  Aligned_cols=79  Identities=20%  Similarity=0.133  Sum_probs=70.7

Q ss_pred             CEEEccCC-CCCcCCcCccCCCCCcEEEccC-CcCCCCCCc-hhhhcCCCCCEEEccCCCCCccc-hhhcCCCCCCEEEc
Q psy2947          84 EVLSLKSN-SLTSLPPDIGRLTNLRVLCLTD-NCLQNASIP-FTLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYR  159 (441)
Q Consensus        84 ~~L~l~~n-~l~~lp~~~~~l~~L~~L~l~~-n~l~~~~~p-~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l  159 (441)
                      ..++++++ +++.+|. |..+++|+.|+|++ |.|+  .+| ..|..+++|++|+|++|+|+.+| ..|.++++|+.|+|
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~--~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l   87 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQ--HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCC--EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCC--CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence            45688888 9999999 99999999999996 9998  555 57899999999999999998886 67899999999999


Q ss_pred             cCCcCc
Q psy2947         160 HGNHNY  165 (441)
Q Consensus       160 ~~N~~~  165 (441)
                      ++|++.
T Consensus        88 ~~N~l~   93 (347)
T 2ifg_A           88 SFNALE   93 (347)
T ss_dssp             CSSCCS
T ss_pred             CCCccc
Confidence            999963

>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A

Probab=99.16  E-value=5.8e-11  Score=87.99  Aligned_cols=68  Identities=13%  Similarity=0.177  Sum_probs=62.1

Q ss_pred             hHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHH---HHHHHHHhCCCCCCceeHHHHHHHHhccCC
Q psy2947         370 PKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKE---VDQIFREANVTMNSKVRYEDFVKIACAPVP  438 (441)
Q Consensus       370 ~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~---~~~l~~~~d~d~dg~i~~~ef~~~l~~~~~  438 (441)
                      .+.++.+|+.+|.+++|.|+.+||+.+++.+|..+++++   +..++..+|.|++|.|+| ||+.++.+.+.
T Consensus        13 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~d~~~~g~i~~-eF~~~~~~~~~   83 (86)
T 1j7q_A           13 KDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQTYTKRETEAIMKEARGPKGDKKNIGPE-EWLTLCSKWVR   83 (86)
T ss_dssp             HHHHHHHHHHHSTTTTSCBCHHHHHHHHHHTSCCCSHHHHHHHHHHHHCSSCSSCCBCTT-HHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCCCcCCH-HHHHHHHHHHh
Confidence            456888999999999999999999999999999999999   999999999999999999 99999876543

>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6

Probab=99.16  E-value=4e-11  Score=91.17  Aligned_cols=62  Identities=15%  Similarity=0.158  Sum_probs=51.1

Q ss_pred             hHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy2947         370 PKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA  433 (441)
Q Consensus       370 ~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l  433 (441)
                      .+.++.+|+.+|+|++|+|+.+|++.+++..|  +++++++.+++.+|.|++|.|+|+||+.+|
T Consensus        10 ~~~~~~~F~~~D~d~dG~Is~~el~~~l~~~~--l~~~~l~~i~~~~D~d~dG~i~~~EF~~~~   71 (99)
T 1qjt_A           10 NPVYEKYYRQVEAGNTGRVLALDAAAFLKKSG--LPDLILGKIWDLADTDGKGVLSKQEFFVAL   71 (99)
T ss_dssp             CTHHHHHHHHHCCTTSSCCCSHHHHHHHHTSS--SCHHHHHHHHHHHCCSSSSSCCSHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCCcCCHHHHHHHHHHcC--CCHHHHHHHHHHHCCCCCCcCCHHHHHHHH
Confidence            35677888888888888888888888888776  678888888888888888888888888877

>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}

Probab=99.16  E-value=9.6e-11  Score=87.83  Aligned_cols=64  Identities=11%  Similarity=0.325  Sum_probs=58.5

Q ss_pred             hHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         370 PKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       370 ~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      .+.++.+|+.+|.|++|.|+.+||+.+++.+|  ++.++++.+|+.+|.|++|.|+|+||+.++.+
T Consensus        26 ~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g--~~~~~~~~~~~~~D~d~dg~I~~~EF~~~~~~   89 (91)
T 2pmy_A           26 LARLRSVFAACDANRSGRLEREEFRALCTELR--VRPADAEAVFQRLDADRDGAITFQEFARGFLG   89 (91)
T ss_dssp             HHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTT--CCHHHHHHHHHHHCTTCSSEECHHHHTHHHHH
T ss_pred             HHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcC--cCHHHHHHHHHHhCCCCCCCEeHHHHHHHHHH
Confidence            35678899999999999999999999999988  78999999999999999999999999998865

>2kld_A Polycystin-2; PC2, PKD2, calcium binding domain, EF hand, cytosolic, calcium, coiled coil, disease mutation, glycoprotein, ION transport; NMR {Homo sapiens} PDB: 2kle_A 2kq6_A 2y4q_A

Probab=99.15  E-value=2.2e-12  Score=102.56  Aligned_cols=104  Identities=13%  Similarity=0.301  Sum_probs=53.5

Q ss_pred             HHHcCCCcCHHHHHHHHHhCCCcccHHHHHH-----HHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhcc
Q psy2947         291 MRSLGMSPTIAELKKYLAEKGGKLSFPDFLK-----VMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSK  365 (441)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~-----~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~  365 (441)
                      ++.+|..++..++..++...+|.|+++||..     ++..........++++++|+.||    |+|+.+|++.++..+..
T Consensus         2 lr~lG~~~t~~ei~~~~~~~~g~i~f~EF~~~~~~~~~~~~~~~~~~~~~l~~aF~~fD----G~I~~~El~~~l~~lG~   77 (123)
T 2kld_A            2 STAIGINDTYSEVKSDLAQQKAEMELSDLIRKGYHKALVKLKLKKNTVDDISESLRQGG----GKLNFDELRQDLKGKGH   77 (123)
T ss_dssp             -------------------------------------------------CCSCSSTTTT----TCEEHHHHHHHTTTCCS
T ss_pred             hhhcCCCCCHHHHHHHHHHcCCCccHHHHHhHhHHHHHHHhhcChhHHHHHHHHHHHhC----CCCCHHHHHHHHHHhCC
Confidence            4566777788888888777799999999999     66654333334466888999999    99999999999987632


Q ss_pred             CCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhC
Q psy2947         366 AEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWG  401 (441)
Q Consensus       366 ~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~  401 (441)
                         ++++++.+|+.+|.|++|.|+++||.+++..+.
T Consensus        78 ---t~~ei~~~~~~~D~d~dG~I~~~EF~~~~~~~~  110 (123)
T 2kld_A           78 ---TDAEIEAIFTKYDQDGDQELTEHEHQQMRDDLE  110 (123)
T ss_dssp             ---SHHHHHHHHHHHSSSSCCEECSHHHHHCSCTTT
T ss_pred             ---CHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHH
Confidence               678999999999999999999999999986654

>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6

Probab=99.15  E-value=5.8e-11  Score=89.74  Aligned_cols=62  Identities=16%  Similarity=0.241  Sum_probs=54.1

Q ss_pred             hHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy2947         370 PKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA  433 (441)
Q Consensus       370 ~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l  433 (441)
                      .++++.+|+.+|+|++|+|+.+|++.+++..|  +++++++.+++.+|.|++|.|+|+||+.+|
T Consensus         9 ~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g--~~~~~~~~i~~~~D~d~dG~i~~~EF~~~~   70 (95)
T 1c07_A            9 KAKYDEIFLKTDKDMDGFVSGLEVREIFLKTG--LPSTLLAHIWSLCDTKDCGKLSKDQFALAF   70 (95)
T ss_dssp             HHHHHHHHHHHCTTCSSEECHHHHHHHHHTTT--CCHHHHHHHHHHHCTTCSSSEETTTHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcC--CCHHHHHHHHHHHCCCCCCcCCHHHHHHHH
Confidence            35677889999999999999999999998876  778889999999999999999999998877

>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand (helix-loop-helix) calcium binding protein, four-HEL domain, protein engineering; HET: FME; 1.44A {Bos taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A 1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A 1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A

Probab=99.15  E-value=4.1e-11  Score=86.46  Aligned_cols=66  Identities=21%  Similarity=0.406  Sum_probs=58.8

Q ss_pred             hHHHHHHHHHh-CCCCC-CcccHHHHHHHHHHhCCCC--CHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         370 PKEVVDAFKAA-DTTKS-GTVPAKYLKHVLVNWGEGL--SSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       370 ~~~~~~~f~~~-D~~~~-G~is~~ef~~~l~~~~~~l--~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      .+.++.+|+.+ |.+++ |.|+.+||+.+++.+|..+  ++++++.+++.+|.|++|.|+|+||+.++.+
T Consensus         4 ~~~l~~~F~~~~D~d~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~l~~~~D~~~~g~i~~~eF~~~~~~   73 (76)
T 1qx2_A            4 PEEIKGAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVSFEEFLVMMKK   73 (76)
T ss_dssp             HHHHHHHHHHHHTSSSCTTSEEHHHHHHHHHHHGGGSCTTSCSHHHHHHHHCTTCSSEECHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccCCCcCeECHHHHHHHHHHhCCCcCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHH
Confidence            46788899999 99999 9999999999999988888  8888999999999999999999999988754

>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP: a.39.1.2 PDB: 1ozo_A

Probab=99.15  E-value=6.5e-11  Score=89.38  Aligned_cols=65  Identities=17%  Similarity=0.374  Sum_probs=48.3

Q ss_pred             HHHHHHHHHhC-CCC-CCcccHHHHHHHHHH-----hCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         371 KEVVDAFKAAD-TTK-SGTVPAKYLKHVLVN-----WGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       371 ~~~~~~f~~~D-~~~-~G~is~~ef~~~l~~-----~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      +.++.+|+.|| .|+ +|+|+.+||+.+++.     +|..+++++++.+++.+|.|+||.|+|+||+.+|.+
T Consensus         9 ~~l~~~F~~fD~~dgd~G~I~~~El~~~l~~~~~~~lg~~~~~~~v~~l~~~~D~d~dG~I~f~EF~~~~~~   80 (95)
T 1j55_A            9 GMIIDVFSRYSGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKDLDANGDAQVDFSEFIVFVAA   80 (95)
T ss_dssp             HHHHHHHHHHTTSSSCTTEECHHHHHHHHHHHSTTCC------CHHHHHHHHHCSSSSSSEEHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCCCcCCHHHHHHHHHHHhHhhcccccCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHH
Confidence            46777888888 687 478888888888876     455667788888888888888888888888887754

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.14  E-value=4.1e-12  Score=121.37  Aligned_cols=103  Identities=22%  Similarity=0.187  Sum_probs=53.9

Q ss_pred             CcccEEeccCCCcCc--------ccCCC-CCCCEEEccCCCCCcCCcC-----ccC-CCCCcEEEccCCcCCCCC----C
Q psy2947          61 SHAFLLSLSYTPIGR--------RIFKC-DTVEVLSLKSNSLTSLPPD-----IGR-LTNLRVLCLTDNCLQNAS----I  121 (441)
Q Consensus        61 ~~L~~l~l~~n~i~~--------~~~~l-~~L~~L~l~~n~l~~lp~~-----~~~-l~~L~~L~l~~n~l~~~~----~  121 (441)
                      ++|+.|+|++|.+..        .+..+ ++|++|+|++|+++..+..     +.. .++|++|++++|.++ ..    +
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~-~~~~~~l  158 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG-IKSSDEL  158 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG-GSCHHHH
T ss_pred             CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC-HHHHHHH
Confidence            566667777665431        12233 5666666666666644432     222 246666666666665 21    1


Q ss_pred             chhhhcCC-CCCEEEccCCCCCccc-----hhhcCC-CCCCEEEccCCcC
Q psy2947         122 PFTLTFCK-NLTHLYLDNNLLDALP-----GFLLSM-PQLDTVYRHGNHN  164 (441)
Q Consensus       122 p~~~~~l~-~L~~L~l~~n~l~~lp-----~~~~~l-~~L~~L~l~~N~~  164 (441)
                      +..+..++ +|++|+|++|+|+..+     ..+..+ ++|+.|+|++|.+
T Consensus       159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i  208 (362)
T 3goz_A          159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLL  208 (362)
T ss_dssp             HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred             HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCC
Confidence            22233333 6666666666664433     123334 3666666666664

>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein; 1.90A {Homo sapiens}

Probab=99.14  E-value=1.3e-10  Score=89.97  Aligned_cols=68  Identities=16%  Similarity=0.267  Sum_probs=63.0

Q ss_pred             hHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhccC
Q psy2947         370 PKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAPV  437 (441)
Q Consensus       370 ~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~~~  437 (441)
                      .+.++.+|+.+|.|++|.|+.+||+.++..+|..+++++++.+++.+|.|++|.|+|+||+.++.+..
T Consensus        31 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~l~~~~D~d~dg~i~~~eF~~~~~~~~   98 (107)
T 2d58_A           31 LEGFKEKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSGSGETFSYPDFLRMMLGKR   98 (107)
T ss_dssp             HHHHHHHHTTSCCCTTSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHCSSSSSEECHHHHHHHHSSSS
T ss_pred             HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHcc
Confidence            35678899999999999999999999999999999999999999999999999999999999987653

>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}

Probab=99.14  E-value=8.7e-11  Score=89.44  Aligned_cols=64  Identities=20%  Similarity=0.185  Sum_probs=57.7

Q ss_pred             HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy2947         333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVL  397 (441)
Q Consensus       333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l  397 (441)
                      .++++++|+.||.|++|.|+.+||+.++..+ +....+++++.+|+.+|.|++|.|+++||.++|
T Consensus        35 ~~el~~~F~~~D~d~~G~I~~~El~~~l~~l-g~~~~~~ei~~l~~~~D~d~dG~I~~~EF~~~m   98 (100)
T 2lv7_A           35 LEEIREAFKVFDRDGNGFISKQELGTAMRSL-GYMPNEVELEVIIQRLDMDGDGQVDFEEFVTLL   98 (100)
T ss_dssp             HHHHHHHHHHTCSSCSSCBCHHHHHHHHHHH-TCCCCTTTHHHHHHHHCSSCSSSBCHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHh-CCCCCHHHHHHHHHHHCCCCCCeEeHHHHHHHh
Confidence            4678999999999999999999999999987 445557789999999999999999999999886

>4drw_A Protein S100-A10/annexin A2 chimeric protein; atypical EF-hand, heteropentameric complex, membrane repair; 3.50A {Homo sapiens}

Probab=99.14  E-value=3e-11  Score=94.71  Aligned_cols=66  Identities=17%  Similarity=0.215  Sum_probs=40.1

Q ss_pred             HHHHHHHHhhcCCCCCcccHHHHHHHHHhh----ccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTH----SKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       334 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~----~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      +.++.+|+.||.| +|+|+.+|+++++...    ......++.++.+|+.+|.|+||.|+++||..+|..+
T Consensus        15 e~l~~~F~~yd~d-dG~Is~~EL~~~l~~~~~~~l~~~~~~~~v~~~i~~~D~d~DG~IdF~EF~~lm~~l   84 (121)
T 4drw_A           15 ETMMFTFHKFAGD-KGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVGFQSFFSLIAGL   84 (121)
T ss_dssp             HHHHHTTGGGSCT-TCSCCHHHHHHHTTTSCHHHHTTSSCTTHHHHHHHHHCTTCSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCC-CCEEcHHHHHHHHHHHhhhhcccCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHH
Confidence            4556666666665 5666666666666541    1333345566666666666666666666666666554

>4drw_A Protein S100-A10/annexin A2 chimeric protein; atypical EF-hand, heteropentameric complex, membrane repair; 3.50A {Homo sapiens}

Probab=99.13  E-value=6.1e-11  Score=92.93  Aligned_cols=63  Identities=14%  Similarity=0.293  Sum_probs=44.6

Q ss_pred             HHHHHHHHHhCCCCCCcccHHHHHHHHHH-----hCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         371 KEVVDAFKAADTTKSGTVPAKYLKHVLVN-----WGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       371 ~~~~~~f~~~D~~~~G~is~~ef~~~l~~-----~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      +.+..+|+.||.| +|+|+.+||+++|+.     ++...++++++.+++.+|.|+||.|+|+||+.+|.
T Consensus        15 e~l~~~F~~yd~d-dG~Is~~EL~~~l~~~~~~~l~~~~~~~~v~~~i~~~D~d~DG~IdF~EF~~lm~   82 (121)
T 4drw_A           15 ETMMFTFHKFAGD-KGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVGFQSFFSLIA   82 (121)
T ss_dssp             HHHHHTTGGGSCT-TCSCCHHHHHHHTTTSCHHHHTTSSCTTHHHHHHHHHCTTCSSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCC-CCEEcHHHHHHHHHHHhhhhcccCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHH
Confidence            4566677777766 677777777777764     56666777777777777777777777777777664

>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response, metal binding PR; 1.73A {Homo sapiens} PDB: 1odb_A* 2wc8_A 2wcf_A 2wce_A 1e8a_A 1gqm_A

Probab=99.13  E-value=5.1e-11  Score=89.99  Aligned_cols=65  Identities=17%  Similarity=0.328  Sum_probs=54.7

Q ss_pred             HHHHHHHHHhC-CCCCC-cccHHHHHHHHHH-----hCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         371 KEVVDAFKAAD-TTKSG-TVPAKYLKHVLVN-----WGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       371 ~~~~~~f~~~D-~~~~G-~is~~ef~~~l~~-----~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      ++++.+|+.|| +|++| +|+.+||+.+++.     +|..+++++++.+++.+|.|+||.|+|+||+.++.+
T Consensus        12 ~~l~~~F~~fD~~dg~gg~I~~~El~~~l~~~~~~~lg~~~~~~~v~~~~~~~D~d~dG~I~f~EF~~~~~~   83 (95)
T 2wcb_A           12 EGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAI   83 (95)
T ss_dssp             HHHHHHHHHHHTSSSSTTEEEHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTTSSSSTTSEEEHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCCCccCHHHHHHHHHHHhhhhccccccHHHHHHHHHHHcCCCCCcCcHHHHHHHHHH
Confidence            46778899998 78887 9999999999876     556678888999999999999999999999888754

>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated, SEN membrane targeting, EF-hand, cell projection, cilium; 2.00A {Trypanosoma cruzi}

Probab=99.13  E-value=4.8e-12  Score=111.88  Aligned_cols=122  Identities=16%  Similarity=0.186  Sum_probs=83.7

Q ss_pred             CcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHH----HHHHHHh-----CC
Q psy2947         312 GKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEV----VDAFKAA-----DT  382 (441)
Q Consensus       312 g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~----~~~f~~~-----D~  382 (441)
                      +.++++++...+..... ......++.+|+.+|.|++|.|+++||..++..........+++    ..+|..+     |.
T Consensus        27 ~~~~~~~l~~~~~~~ls-~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (219)
T 3cs1_A           27 RKEAWERIRQAIPREKT-AEAKQRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKL  105 (219)
T ss_dssp             HHHHHHHHHHHSCCSSS-HHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHTTCGGGTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCC-HHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhhhhcc
Confidence            34555555554331110 11235688999999999999999999999887632222222223    3333322     34


Q ss_pred             CCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         383 TKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       383 ~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      +++|.|+++||..++.......+.+++..+|+.+|.|++|.|+.+||..++.
T Consensus       106 d~~g~I~~~EF~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l~  157 (219)
T 3cs1_A          106 ENKGSEDFVEFLEFRLMLCYIYDFFELTVMFDEIDASGNMLVDEEEFKRAVP  157 (219)
T ss_dssp             HTSCCCSSBCHHHHHHHHHHHHHHHHHHHHHHTTCSSSSSEEEHHHHHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHHhccchHHHHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence            8999999999999875433222456799999999999999999999999884

>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}

Probab=99.13  E-value=4.6e-10  Score=97.17  Aligned_cols=97  Identities=12%  Similarity=0.057  Sum_probs=84.6

Q ss_pred             CHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh-CCCCCHHHHH
Q psy2947         332 IPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW-GEGLSSKEVD  410 (441)
Q Consensus       332 ~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~-~~~l~~~~~~  410 (441)
                      ....++.+|+.+|.|++|.|+.+||..++..+. .......+..+|..+    +|.|+++||..++... ......+.+.
T Consensus        55 ~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~lg-~~~~~~~~~~l~~~~----~g~i~~~eF~~~~~~~~~~~~~~~~l~  129 (196)
T 3dtp_E           55 QVQEFKEAFQLIDQDKDGFISKNDIRATFDSLG-RLCTEQELDSMVAEA----PGPINFTMFLTIFGDRIAGTDEEDVIV  129 (196)
T ss_dssp             THHHHHHHHHHHCCSCSSBCCHHHHHHHHHTTS-CCCCHHHHHHHHTTS----SSCCBHHHHHHHHHHCCCSSCCHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhC-CCCCHHHHHHHHHHc----cCCCcHHHHHHHHHHHhcCCCcHHHHH
Confidence            346789999999999999999999999998873 445577888888777    8999999999999874 3445688899


Q ss_pred             HHHHHhCCCCCCceeHHHHHHHH
Q psy2947         411 QIFREANVTMNSKVRYEDFVKIA  433 (441)
Q Consensus       411 ~l~~~~d~d~dg~i~~~ef~~~l  433 (441)
                      .+|+.+|.|++|.|+.+||..++
T Consensus       130 ~~F~~~D~d~~G~Is~~El~~~l  152 (196)
T 3dtp_E          130 NAFNLFDEGDGKCKEETLKRSLT  152 (196)
T ss_dssp             HHHHTTCSSSSCCBHHHHHHHHH
T ss_pred             HHHHHHCCCCCCcCcHHHHHHHH
Confidence            99999999999999999999998

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.12  E-value=1.3e-11  Score=117.91  Aligned_cols=102  Identities=21%  Similarity=0.163  Sum_probs=47.0

Q ss_pred             cccEEeccCCCcC--------cccCCCC-CCCEEEccCCCCCcC-CcCccCC-----CCCcEEEccCCcCCCCCCchhh-
Q psy2947          62 HAFLLSLSYTPIG--------RRIFKCD-TVEVLSLKSNSLTSL-PPDIGRL-----TNLRVLCLTDNCLQNASIPFTL-  125 (441)
Q Consensus        62 ~L~~l~l~~n~i~--------~~~~~l~-~L~~L~l~~n~l~~l-p~~~~~l-----~~L~~L~l~~n~l~~~~~p~~~-  125 (441)
                      +|+.|+|++|.+.        ..+..++ +|++|+|++|.++.. +..+..+     ++|++|++++|.++ +..+..+ 
T Consensus        23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~-~~~~~~l~  101 (362)
T 3goz_A           23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS-YKSSDELV  101 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG-GSCHHHHH
T ss_pred             CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCC-hHHHHHHH
Confidence            3555555555332        2233444 555555555555533 2223332     55555555555554 2222222 


Q ss_pred             ---hcC-CCCCEEEccCCCCCccc-hh----hcC-CCCCCEEEccCCcC
Q psy2947         126 ---TFC-KNLTHLYLDNNLLDALP-GF----LLS-MPQLDTVYRHGNHN  164 (441)
Q Consensus       126 ---~~l-~~L~~L~l~~n~l~~lp-~~----~~~-l~~L~~L~l~~N~~  164 (441)
                         ..+ ++|++|++++|+|+..+ ..    +.. .++|++|++++|.+
T Consensus       102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l  150 (362)
T 3goz_A          102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDL  150 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCG
T ss_pred             HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcC
Confidence               222 45555555555554443 11    222 23555555555554

>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand, helix-loop- helix, nervous system, metal binding protein; NMR {Haemopis marmorata} PDB: 1yx8_A

Probab=99.11  E-value=7.2e-11  Score=86.78  Aligned_cols=66  Identities=26%  Similarity=0.402  Sum_probs=59.5

Q ss_pred             hHHHHHHHHHhCCCCCCcccHHHHHHHHHHhC--CCCCHHHHHH----HHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         370 PKEVVDAFKAADTTKSGTVPAKYLKHVLVNWG--EGLSSKEVDQ----IFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       370 ~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~--~~l~~~~~~~----l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      .+.++.+|+.+|.|++|.|+.+||+.++..+|  ..+++++++.    +++.+|.|++|.|+|+||+..+..
T Consensus         6 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~D~~~dg~I~~~eF~~~~~~   77 (83)
T 1yx7_A            6 KAELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKISKEEFLNANAE   77 (83)
T ss_dssp             CTHHHHHHHHHSSSCSSSCSHHHHHHHHHHHTTCTTTTTTTTHHHHHHHHTTTCSSSCSCCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHhhHH
Confidence            46788999999999999999999999999999  8888888888    999999999999999999977643

>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO, EF-hand calcium binding proteins, S100 proteins, protein dynamics, binding protein; 2.10A {Homo sapiens} SCOP: a.39.1.0 PDB: 2l0u_A 2l0v_A 2l50_A 2l51_A

Probab=99.11  E-value=1.1e-10  Score=88.68  Aligned_cols=66  Identities=11%  Similarity=0.223  Sum_probs=50.0

Q ss_pred             HHHHHHHHHhCCCC---CCcccHHHHHHHHHHhC-CCCC----HHHHHHHHHHhCCCCCCceeHHHHHHHHhcc
Q psy2947         371 KEVVDAFKAADTTK---SGTVPAKYLKHVLVNWG-EGLS----SKEVDQIFREANVTMNSKVRYEDFVKIACAP  436 (441)
Q Consensus       371 ~~~~~~f~~~D~~~---~G~is~~ef~~~l~~~~-~~l~----~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~~  436 (441)
                      ++++.+|+.||.++   +|+|+.+||+.+|+..+ ..++    +++++.+++.+|.|+||.|+|+||+.+|.+.
T Consensus        11 ~~l~~~F~~fD~~~g~~~G~Is~~EL~~~l~~~~~~~l~~~~~~~ev~~~i~~~D~d~DG~Idf~EF~~~m~~~   84 (100)
T 3nxa_A           11 IVLVENFYKYVSKYSLVKNKISKSSFREMLQKELNHMLSDTGNRKAADKLIQNLDANHDGRISFDEYWTLIGGI   84 (100)
T ss_dssp             HHHHHHHHHTSCTTCSCTTCBCHHHHHHHHHHHSTTTTCSSHHHHHHHHHHHHSCCCSSCCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCcCCCCCCeEcHHHHHHHHHHHccccccccccHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence            46777888888753   68888888888887643 3333    6778888888888888888888888887643

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.11  E-value=4.8e-11  Score=113.34  Aligned_cols=160  Identities=12%  Similarity=0.052  Sum_probs=111.5

Q ss_pred             cEEeccCC---CcCcccCCCCCCCEEEccCCCCCcCCcC-ccCCCCCcEEEccCCcCCCCCCch-hhhcCCCCCE-EEcc
Q psy2947          64 FLLSLSYT---PIGRRIFKCDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPF-TLTFCKNLTH-LYLD  137 (441)
Q Consensus        64 ~~l~l~~n---~i~~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~p~-~~~~l~~L~~-L~l~  137 (441)
                      +.++.+++   .||..+.  +++++|+|++|+|+.+|+. |.++++|++|+|++|.+. +.+|. .+.++++|.. +.++
T Consensus        12 ~~v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~-~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL-EVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTC-CEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCC-CccChhHhhcchhhhhhhccc
Confidence            35666665   6776663  6899999999999999976 999999999999999986 46775 4688888775 6677


Q ss_pred             CCCCCccc-hhhcCCCCCCEEEccCCcCccCccccccc---------------ccccc-cccccc-hhHHH-Hhhccccc
Q psy2947         138 NNLLDALP-GFLLSMPQLDTVYRHGNHNYFKSTFMWYH---------------SDIHA-RIRSTS-TRDEV-LRKQKKLH  198 (441)
Q Consensus       138 ~n~l~~lp-~~~~~l~~L~~L~l~~N~~~~~~~~~~~~---------------~~~p~-~l~~l~-~~~~~-l~~~~~~~  198 (441)
                      .|+|+.+| ..|..+++|++|++++|.+..........               ..++. .+..+. .+..+ +.+|.+..
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~  168 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  168 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence            89999986 77899999999999999986554322110               01111 122222 12223 56677777


Q ss_pred             CCchhhhhhhhccccccc-ccCCCCCCCchh
Q psy2947         199 QPSRLQDLAVQSVIASKE-NFFEPGLFPGPL  228 (441)
Q Consensus       199 ~p~~l~~l~~l~~l~l~~-n~~~~~~~p~~~  228 (441)
                      +|........+..+.+.. |.+.  .+|...
T Consensus       169 i~~~~f~~~~L~~l~l~~~n~l~--~i~~~~  197 (350)
T 4ay9_X          169 IHNSAFNGTQLDELNLSDNNNLE--ELPNDV  197 (350)
T ss_dssp             ECTTSSTTEEEEEEECTTCTTCC--CCCTTT
T ss_pred             CChhhccccchhHHhhccCCccc--CCCHHH
Confidence            777666666777777764 4333  366543

>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}

Probab=99.11  E-value=3.8e-10  Score=85.05  Aligned_cols=79  Identities=20%  Similarity=0.260  Sum_probs=66.4

Q ss_pred             HHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy2947         319 FLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLV  398 (441)
Q Consensus       319 f~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~  398 (441)
                      |..++..........++++.+|+.+|.|++|.|+.+||..++... ......++++.+|+.+|.+++|.|+++||..++.
T Consensus        14 ~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~-g~~~~~~e~~~l~~~~D~d~dG~I~~~EF~~~~~   92 (94)
T 2kz2_A           14 ENLYFQSLMKDTDSEEEIREAFRVEDKDGNGYISAAELRHVMTNL-GEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT   92 (94)
T ss_dssp             CTHHHHHHHCCCSCHHHHHHHHHHHCTTCCSCBCHHHHHHHHHHH-TCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHCCCCcCcCCHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHh
Confidence            334444444455678899999999999999999999999999887 3445678999999999999999999999999875

>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}

Probab=99.11  E-value=2.1e-10  Score=89.26  Aligned_cols=61  Identities=18%  Similarity=0.351  Sum_probs=49.8

Q ss_pred             HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy2947         371 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA  433 (441)
Q Consensus       371 ~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l  433 (441)
                      ++++.+|+.+|+|++|+|+.+|++.+++  +..+++++++.+++.+|.|+||.|+|+||+.+|
T Consensus        14 ~~l~~~F~~~D~d~dG~I~~~El~~~l~--~~~~~~~~~~~i~~~~D~d~dG~I~~~EF~~~~   74 (111)
T 2kgr_A           14 LKYRQLFNSHDKTMSGHLTGPQARTILM--QSSLPQAQLASIWNLSDIDQDGKLTAEEFILAM   74 (111)
T ss_dssp             HHHHHHHHTTSCSSCCEEEHHHHHHHHH--TTCCCHHHHHHHHHHHCSSCCSEEEHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCCcCcHHHHHHHHH--hCCCCHHHHHHHHHHHCCCCCCCCcHHHHHHHH
Confidence            4667788888888888888888888887  455788888888888888888888888888776

>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal binding protein; 2.10A {Mus musculus} PDB: 2g2b_A

Probab=99.10  E-value=2.3e-10  Score=94.09  Aligned_cols=85  Identities=5%  Similarity=0.056  Sum_probs=48.6

Q ss_pred             HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHH
Q psy2947         333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQI  412 (441)
Q Consensus       333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l  412 (441)
                      .++++.+|+.||.|++|.|+.+||..++... +.....++++.+|+.+|.+++|.|+++||..++...     .+++..+
T Consensus        47 ~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~-g~~~~~~~~~~l~~~~D~d~dg~I~~~eF~~~~~~~-----~~~~~~a  120 (147)
T 1wy9_A           47 LEAFKVKYMEFDLNGNGDIDIMSLKRMLEKL-GVPKTHLELKRLIREVSSGSEETFSYSDFLRMMLGK-----RSAILRM  120 (147)
T ss_dssp             HHHHHHHHTTSCCCTTSSEEHHHHHHHHHHT-TCCCCHHHHHHHHHHHCSSCTTEECHHHHHHHHCSS-----GGGGGGG
T ss_pred             HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHh-----HHHHHHH
Confidence            3456666666666666666666666666554 223345566666666666666666666666666432     3445556


Q ss_pred             HHHhCCCCCCc
Q psy2947         413 FREANVTMNSK  423 (441)
Q Consensus       413 ~~~~d~d~dg~  423 (441)
                      |+.+|.+++|.
T Consensus       121 F~~~D~d~~g~  131 (147)
T 1wy9_A          121 ILMYEEKNKEH  131 (147)
T ss_dssp             GGGCCCC----
T ss_pred             HHHHccCCCCC
Confidence            66666666654

>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6

Probab=99.08  E-value=6e-11  Score=91.97  Aligned_cols=62  Identities=15%  Similarity=0.229  Sum_probs=49.9

Q ss_pred             hHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy2947         370 PKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA  433 (441)
Q Consensus       370 ~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l  433 (441)
                      .++++.+|+.+|+|++|+|+.+|++.+++..|  +++++++.+++.+|.|++|.|+|+||+.+|
T Consensus        21 ~~~~~~~F~~~D~d~dG~Is~~el~~~l~~~g--l~~~el~~i~~~~D~d~dG~I~~~EF~~~m   82 (110)
T 1iq3_A           21 REYYVNQFRSLQPDPSSFISGSVAKNFFTKSK--LSIPELSYIWELSDADCDGALTLPEFCAAF   82 (110)
T ss_dssp             HHHHHHHHHHHCCSSSSEEEHHHHHHHCCSSS--CSSCCHHHHHHHHCSSSCSEEEHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcC--CCHHHHHHHHHHHcCCCCCcCcHHHHHHHH
Confidence            45677888888888888888888888887765  667778888888888888888888888776

>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type four-helix bundle, metal binding protein; NMR {Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A 2l0p_A 2jpt_A

Probab=99.08  E-value=1.5e-10  Score=87.12  Aligned_cols=65  Identities=22%  Similarity=0.392  Sum_probs=57.3

Q ss_pred             HHHHHHHHHhC-CCCCC-cccHHHHHHHHHH-----hCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         371 KEVVDAFKAAD-TTKSG-TVPAKYLKHVLVN-----WGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       371 ~~~~~~f~~~D-~~~~G-~is~~ef~~~l~~-----~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      +.++.+|+.+| .+++| .|+.+||+.+++.     +|..+++++++.+++.+|.|++|.|+|+||+.++.+
T Consensus         9 ~~l~~~F~~~D~~d~~G~~I~~~el~~~l~~~~~~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~~   80 (93)
T 1k2h_A            9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKIMKELDENGDGEVDFQEFVVLVAA   80 (93)
T ss_dssp             HHHHHHHHHHHTTSSCCSSCCHHHHHHHHHHHTHHHHHCCCCHHHHHHHHHHHHHCTTSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccCCCcCccCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence            56788899999 79999 9999999999987     888889999999999999999999999999988754

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=99.07  E-value=1.4e-10  Score=119.97  Aligned_cols=126  Identities=10%  Similarity=0.160  Sum_probs=89.7

Q ss_pred             chHHHHHhhh--ccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHH-----------hCCCcccHHHHHHHHHhhcC
Q psy2947         264 PYLEFRECFF--LFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLA-----------EKGGKLSFPDFLKVMHTHSK  328 (441)
Q Consensus       264 ~~~~l~~~f~--~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~-----------~~~g~i~~~ef~~~~~~~~~  328 (441)
                      ....+++.|.  .+|.+  |.| +..|+..+++.     ...++.+++.           +++|.|+|+||..++.... 
T Consensus       144 ~~~~Lk~~F~~~~fD~d~dG~I-s~~EL~~~l~~-----~~~ev~~li~~~d~~~~~~D~d~~g~idf~EF~~~~~~l~-  216 (799)
T 2zkm_X          144 RSTFLDKILVKLKMQLNSEGKI-PVKNFFQMFPA-----DRKRVEAALSACHLPKGKNDAINPEDFPEPVYKSFLMSLC-  216 (799)
T ss_dssp             HHHHHHHHHHHHHHSCCTTSCE-EHHHHHHHSCS-----CHHHHHHHHHHTTCCCCTTCEECGGGCCHHHHHHHHHHHS-
T ss_pred             HHHHHHHHhHHhccCCCCCCeE-CHHHHHHHHhh-----hHHHHHHHHHHhCcCccccccCCCCcCCHHHHHHHHHHcc-
Confidence            4567888888  67865  888 78999888765     2566776664           3568999999999998764 


Q ss_pred             CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCC---------CChHHHHHHHHHhCCC----CCCcccHHHHHH
Q psy2947         329 AEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAE---------DIPKEVVDAFKAADTT----KSGTVPAKYLKH  395 (441)
Q Consensus       329 ~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~---------~~~~~~~~~f~~~D~~----~~G~is~~ef~~  395 (441)
                         ..++++++|+.||.+++|.|+.+||++++...++..         ..+++++++++.+|.|    ++|.|+++||.+
T Consensus       217 ---~r~el~~aF~~fD~d~~g~Is~~eL~~fL~~~Qge~~~~~~~~~~~t~ee~~~iI~~~d~d~~~~~dg~is~eeF~~  293 (799)
T 2zkm_X          217 ---PRPEIDEIFTSYHAKAKPYMTKEHLTKFINQKQRDSRLNSLLFPPARPDQVQGLIDKYEPSGINAQRGQLSPEGMVW  293 (799)
T ss_dssp             ---CCHHHHTTCC--------CCCHHHHHHHHHHTCC---------------CHHHHHHHHCCC--------CCHHHHHH
T ss_pred             ---CHHHHHHHHHHhccCCCCeEcHHHHHHHHHHhcCCcccccccccCCCHHHHHHHHHHhhcccccccCCccchhhhhh
Confidence               357899999999999999999999999999875443         4567899999999999    899999999999


Q ss_pred             HHHH
Q psy2947         396 VLVN  399 (441)
Q Consensus       396 ~l~~  399 (441)
                      +|..
T Consensus       294 ~L~S  297 (799)
T 2zkm_X          294 FLCG  297 (799)
T ss_dssp             HHHS
T ss_pred             cccC
Confidence            9975

>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin crosslinking, ionized calciu binding adapter molecule 2, metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B 2vtg_A

Probab=99.07  E-value=1.6e-10  Score=95.37  Aligned_cols=93  Identities=13%  Similarity=0.241  Sum_probs=76.2

Q ss_pred             HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHH
Q psy2947         333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQI  412 (441)
Q Consensus       333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l  412 (441)
                      ..++..+++.+|.+++    +.+|..+ .      ...+.++.+|+.+|.|++|.|+.+||+.+++.+|..+++++++.+
T Consensus        23 ~~~~~~i~~~~d~~~~----~~~~~~l-~------~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~e~~~l   91 (150)
T 2jjz_A           23 ERRLAEINREFLCDQK----YSDEENL-P------EKLTAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKM   91 (150)
T ss_dssp             HHHHHHHHHHHHTCGG----GSSCTTH-H------HHHHHHHHHHTTSCCCTTSSBCHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHhccCCC----chhhHhH-H------HHHHHHHHHHHHhCCCCcCcCCHHHHHHHHHHcCCCCCHHHHHHH
Confidence            4567778888887764    2222222 1      114678899999999999999999999999999999999999999


Q ss_pred             HHHhCCCCCCceeHHHHHHHHhcc
Q psy2947         413 FREANVTMNSKVRYEDFVKIACAP  436 (441)
Q Consensus       413 ~~~~d~d~dg~i~~~ef~~~l~~~  436 (441)
                      ++.+|.|++|.|+|+||+.++...
T Consensus        92 ~~~~D~d~dg~I~~~eF~~~~~~~  115 (150)
T 2jjz_A           92 ISEVTGGVSDTISYRDFVNMMLGK  115 (150)
T ss_dssp             HHHHHTTSCSSBCHHHHHHHHHSS
T ss_pred             HHHHCCCCCCcEeHHHHHHHHHHh
Confidence            999999999999999999998754

>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein; 2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A 2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A

Probab=99.07  E-value=1.5e-10  Score=88.85  Aligned_cols=65  Identities=12%  Similarity=0.284  Sum_probs=47.8

Q ss_pred             HHHHHHHHHhC-CCCC-CcccHHHHHHHHHH-hCCCCC-HHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         371 KEVVDAFKAAD-TTKS-GTVPAKYLKHVLVN-WGEGLS-SKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       371 ~~~~~~f~~~D-~~~~-G~is~~ef~~~l~~-~~~~l~-~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      ++++.+|+.|| .|++ |+|+.+||+.+++. +|...+ +++++.+++.+|.|+||.|+|+||+.+|..
T Consensus        22 ~~l~~aF~~fD~~dg~~G~Is~~EL~~~l~~~lg~~~~~~~ev~~li~~~D~d~dG~Idf~EF~~~~~~   90 (106)
T 2h2k_A           22 ETVVTTFFTFARQEGRKDSLSVNEFKELVTQQLPHLLKDVGSLDEKMKSLDVNQDSELKFNEYWRLIGE   90 (106)
T ss_dssp             HHHHHHHHHHHTSSSSTTEECHHHHHHHHHHHCTTTTTTCCCHHHHHHHHCTTCSSSEEHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccCCCCCEECHHHHHHHHHHHcCcCCCCHHHHHHHHHHHCCCCCCCCcHHHHHHHHHH
Confidence            45677788888 6775 68888888888875 554443 367788888888888888888888877653

>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A

Probab=99.07  E-value=2.8e-10  Score=87.36  Aligned_cols=60  Identities=13%  Similarity=0.252  Sum_probs=52.8

Q ss_pred             HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy2947         371 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA  433 (441)
Q Consensus       371 ~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l  433 (441)
                      ++++.+|+.+|+ ++|+|+.+|++.+|+..|  ++++++..+++.+|.|+||.|+|+||+.+|
T Consensus        15 ~~~~~~F~~~D~-~dG~Is~~el~~~l~~~g--l~~~el~~i~~~~D~d~dG~id~~EF~~~m   74 (106)
T 1eh2_A           15 AKYDAIFDSLSP-VNGFLSGDKVKPVLLNSK--LPVDILGRVWELSDIDHDGMLDRDEFAVAM   74 (106)
T ss_dssp             HHHHHHHTTSCC-SSSCCBHHHHHHHHHTTT--CCHHHHHHHHHHHCSSCSSBCCHHHHHHHH
T ss_pred             HHHHHHHHHhCC-CCCeEcHHHHHHHHHHcC--CCHHHHHHHHHHHcCCCCCcCcHHHHHHHH
Confidence            467788999999 999999999999998876  788889999999999999999999998877

>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium, polymorphism, structural genomics, spine2, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 2kay_A

Probab=99.06  E-value=1.8e-10  Score=86.50  Aligned_cols=64  Identities=16%  Similarity=0.349  Sum_probs=51.6

Q ss_pred             HHHHHHHHHhC-CCCCC-cccHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         371 KEVVDAFKAAD-TTKSG-TVPAKYLKHVLVNW---GEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       371 ~~~~~~f~~~D-~~~~G-~is~~ef~~~l~~~---~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      +.++.+|+.+| +|++| .|+.+||+.+++..   +. +++++++.+++.+|.|++|.|+|+||+.++..
T Consensus        10 ~~l~~~F~~~D~~d~dG~~I~~~El~~~l~~~~~~~~-~~~~~i~~~~~~~D~d~dG~I~f~EF~~~~~~   78 (92)
T 2kax_A           10 TTMVTTFHKYSGREGSKLTLSRKELKELIKKELCLGE-MKESSIDDLMKSLDKNSDQEIDFKEYSVFLTM   78 (92)
T ss_dssp             HHHHHHHHHHHTTSSCSSEEEHHHHHHHHHHHSCCTT-TCCTTHHHHHHHHTTTCSSEEEHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCCCCCeeCHHHHHHHHHHHcCCCC-CCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence            46777888888 88888 88888888888863   23 67778888888888888888888888887753

>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5

Probab=99.06  E-value=8.3e-11  Score=87.31  Aligned_cols=85  Identities=26%  Similarity=0.323  Sum_probs=67.7

Q ss_pred             hCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcc
Q psy2947         309 EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTV  388 (441)
Q Consensus       309 ~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i  388 (441)
                      +++|.|+++|  .++..... ......++.+|+.+|.|++|.|+.+||..++... ......++++.+|+.+|.+++|.|
T Consensus         1 ~~~G~i~~~e--~~~~~~l~-~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~-~~~~~~~~~~~l~~~~d~~~~g~i   76 (87)
T 1s6j_A            1 HSSGHIDDDD--KHMAERLS-EEEIGGLKELFKMIDTDNSGTITFDELKDGLKRV-GSELMESEIKDLMDAADIDKSGTI   76 (87)
T ss_dssp             CCSSSSSSHH--HHSSSSSC-SSSTTTTTTHHHHHCTTCSSCEEHHHHHHHHHTT-TSSCCHHHHHHHHHHHCTTCSSEE
T ss_pred             CCCCccCccH--HHHHHHCC-HHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCcC
Confidence            3688999999  23322222 2234568999999999999999999999999877 344557889999999999999999


Q ss_pred             cHHHHHHHH
Q psy2947         389 PAKYLKHVL  397 (441)
Q Consensus       389 s~~ef~~~l  397 (441)
                      +++||..++
T Consensus        77 ~~~eF~~~~   85 (87)
T 1s6j_A           77 DYGEFIAAT   85 (87)
T ss_dssp             CHHHHTTCC
T ss_pred             cHHHHHHHH
Confidence            999997654

>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP: a.39.1.1

Probab=99.05  E-value=1.2e-10  Score=84.38  Aligned_cols=66  Identities=18%  Similarity=0.362  Sum_probs=54.8

Q ss_pred             hHHHHHHHHHhCC-CCCC-cccHHHHHHHHHH-hCCCC-CHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         370 PKEVVDAFKAADT-TKSG-TVPAKYLKHVLVN-WGEGL-SSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       370 ~~~~~~~f~~~D~-~~~G-~is~~ef~~~l~~-~~~~l-~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      .+.++.+|+.+|. +++| .|+.+||+.+++. +|..+ ++++++.+++.+|.|++|.|+|+||+.++.+
T Consensus         6 ~~~l~~~F~~~D~~d~~G~~i~~~el~~~l~~~~g~~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~   75 (78)
T 1cb1_A            6 PAELKSIFEKYAAKEGDPNQLSKEELKQLIQAEFPSLLKGPRTLDDLFQELDKNGDGEVSFEEFQVLVKK   75 (78)
T ss_dssp             HHHHHHHHHHHHTTSSSTTEECHHHHHHHHHHHCSSCCSSCCCSSHHHHHTCCCSSSSEEHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCCcCEeCHHHHHHHHHHHhhhhcccHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Confidence            4677888888888 8888 8999999888875 77666 7778888888888888899999999887754

>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A

Probab=99.05  E-value=4.7e-10  Score=89.88  Aligned_cols=61  Identities=16%  Similarity=0.237  Sum_probs=55.1

Q ss_pred             hHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy2947         370 PKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA  433 (441)
Q Consensus       370 ~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l  433 (441)
                      .++++.+|+.|| +++|+|+.+|++.+|+..+  +++++++.|++.+|.|+||.|+|+||+.+|
T Consensus        50 ~~~l~~~F~~fD-d~dG~Is~~El~~~l~~~g--l~~~el~~I~~~~D~d~dG~Ld~~EF~~am  110 (139)
T 2jq6_A           50 KPTYDEIFYTLS-PVNGKITGANAKKEMVKSK--LPNTVLGKIWKLADVDKDGLLDDEEFALAN  110 (139)
T ss_dssp             HHHHHHHHHHSC-CSSSEEEHHHHHHHHHHTT--CCHHHHHHHHHHHCSSCCSEEEHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCCCeECHHHHHHHHHHhC--cCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence            467888999999 9999999999999999877  788999999999999999999999999887

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.04  E-value=2.7e-10  Score=117.32  Aligned_cols=121  Identities=12%  Similarity=0.206  Sum_probs=100.3

Q ss_pred             HhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhh-------cCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHh
Q psy2947         308 AEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAA-------DTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAA  380 (441)
Q Consensus       308 ~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~-------D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~  380 (441)
                      .+++|.|+++|+..++....   ....++..+++..       |.+++|.|+++||.+++..+..    +++++++|+.+
T Consensus       166 ~n~dG~Is~kEl~~~l~~~~---~~~~el~~~~~~~~~~~~k~D~~~~g~L~FeEF~~f~~~L~~----R~EI~eiF~~y  238 (816)
T 3qr0_A          166 EMEKNKIPVKAIQKCLSKDK---DDRARISKALEKIGWPSGKNDAIDLKAFDFDTFFKFYLALLE----RSEIEGIFKEL  238 (816)
T ss_dssp             SCCSSEEEHHHHHHHHCSCH---HHHHHHHHHHHHHTSCCSTTCEEETTTCCHHHHHHHHHHHCC----CTHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHhcC---ChHHHHHHHHHHhcccccccccCCCCcCCHHHHHHHHHhcCC----HHHHHHHHHHH
Confidence            57899999999998876321   1134577777776       6788999999999999998732    45899999999


Q ss_pred             CCCCCCcccHHHHHHHHHHhC-CC---------CCHHHHHHHHHHhCC--C----CCCceeHHHHHHHHhcc
Q psy2947         381 DTTKSGTVPAKYLKHVLVNWG-EG---------LSSKEVDQIFREANV--T----MNSKVRYEDFVKIACAP  436 (441)
Q Consensus       381 D~~~~G~is~~ef~~~l~~~~-~~---------l~~~~~~~l~~~~d~--d----~dg~i~~~ef~~~l~~~  436 (441)
                      |.+++|.||. ||+++|+..+ ..         ++.+++++|+++++.  +    ++|.|++++|.++|...
T Consensus       239 ~~dg~~~mT~-eL~~FL~~~Q~E~~~~~~~~~~~t~e~~~~iI~kye~~~~~~~~~~g~LsldgF~~yL~S~  309 (816)
T 3qr0_A          239 SKNKGNITTV-MFRDFLNDMQRHPSLHKTLFPLYTDAQCEALINDYESAVNKKGKKKGQLTKEGLLYFLMCE  309 (816)
T ss_dssp             TTTSSSEEHH-HHHHHHHHTSSCTTSCTTTSCCCCHHHHHHHHHHHHHHHHGGGCBTTEECHHHHHHHHHSG
T ss_pred             ccCCCCcccH-HHHHHHHHhCCccccccccccccCHHHHHHHHHHhccccchhhhccCCccHHHHHHHhhcc
Confidence            9999999999 9999999986 43         689999999999876  4    68999999999999654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.04  E-value=1.9e-11  Score=120.64  Aligned_cols=104  Identities=21%  Similarity=0.157  Sum_probs=66.2

Q ss_pred             CCcccEEeccCCCcC--------cccCCCCCCCEEEccCCCCCc-----CCcC-ccCCCCCcEEEccCCcCCCCC-----
Q psy2947          60 FSHAFLLSLSYTPIG--------RRIFKCDTVEVLSLKSNSLTS-----LPPD-IGRLTNLRVLCLTDNCLQNAS-----  120 (441)
Q Consensus        60 l~~L~~l~l~~n~i~--------~~~~~l~~L~~L~l~~n~l~~-----lp~~-~~~l~~L~~L~l~~n~l~~~~-----  120 (441)
                      .++|+.|++++|.+.        ..+..+++|+.|++++|.++.     +++. +..+++|++|++++|.++  .     
T Consensus       198 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~--~~~~~~  275 (461)
T 1z7x_W          198 PCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT--AKGCGD  275 (461)
T ss_dssp             CCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC--HHHHHH
T ss_pred             CCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCC--HHHHHH
Confidence            457788888877543        334556778888888877763     2222 335677778888877776  3     


Q ss_pred             CchhhhcCCCCCEEEccCCCCCcc-----chhhc-CCCCCCEEEccCCcCc
Q psy2947         121 IPFTLTFCKNLTHLYLDNNLLDAL-----PGFLL-SMPQLDTVYRHGNHNY  165 (441)
Q Consensus       121 ~p~~~~~l~~L~~L~l~~n~l~~l-----p~~~~-~l~~L~~L~l~~N~~~  165 (441)
                      ++..+..+++|++|++++|.++..     ...+. ..++|+.|++++|.+.
T Consensus       276 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~  326 (461)
T 1z7x_W          276 LCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT  326 (461)
T ss_dssp             HHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred             HHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCc
Confidence            566666677777777777777532     22222 2256777777777653

>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal binding protein; 2.10A {Mus musculus} PDB: 2g2b_A

Probab=99.02  E-value=1.8e-10  Score=94.79  Aligned_cols=66  Identities=18%  Similarity=0.299  Sum_probs=61.3

Q ss_pred             hHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         370 PKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       370 ~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      .++++.+|+.+|.|++|.|+.+||+.+++.+|..+++++++.+++.+|.|++|.|+|+||+.++..
T Consensus        47 ~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~g~~~~~~~~~~l~~~~D~d~dg~I~~~eF~~~~~~  112 (147)
T 1wy9_A           47 LEAFKVKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKRLIREVSSGSEETFSYSDFLRMMLG  112 (147)
T ss_dssp             HHHHHHHHTTSCCCTTSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHCSSCTTEECHHHHHHHHCS
T ss_pred             HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHH
Confidence            467889999999999999999999999999999999999999999999999999999999998864

>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB: 1irj_A*

Probab=99.02  E-value=6.8e-10  Score=86.67  Aligned_cols=84  Identities=10%  Similarity=0.155  Sum_probs=40.7

Q ss_pred             HHHHHHHHhhcC-CCCC-cccHHHHHHHHH-hhccC--C--CChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCH
Q psy2947         334 KEVVDAFKAADT-TKSG-KLSFPDFLKVMH-THSKA--E--DIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSS  406 (441)
Q Consensus       334 ~~~~~~f~~~D~-d~~g-~i~~~ef~~~~~-~~~~~--~--~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~  406 (441)
                      +.++.+|+.||. |++| .|+.+||+.++. .+...  .  ...+.++.+|+.+|.|++|.|+++||..++..    + .
T Consensus        12 ~~l~~~F~~fD~~dgdG~~Is~~El~~~l~~~lg~~~~~~~~~~~~v~~l~~~~D~d~dG~I~f~EF~~~~~~----~-~   86 (113)
T 1xk4_C           12 ETIINTFHQYSVKLGHPDTLNQGEFKELVRKDLQNFLKKENKNEKVIEHIMEDLDTNADKQLSFEEFIMLMAR----L-T   86 (113)
T ss_dssp             HHHHHHHHHHHTTSSSTTSBCHHHHHHHHHHHTTTTTTTGGGCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHH----H-H
T ss_pred             HHHHHHHHHHhhcCCCCCEECHHHHHHHHHHHhhhhhcccccCHHHHHHHHHHhCCCCCCCEeHHHHHHHHHH----H-H
Confidence            455666666663 6666 666666666665 33110  1  23455666666666666666666666666642    1 1


Q ss_pred             HHHHHHHHHhCCCCCCc
Q psy2947         407 KEVDQIFREANVTMNSK  423 (441)
Q Consensus       407 ~~~~~l~~~~d~d~dg~  423 (441)
                      ..+...|...| +++|.
T Consensus        87 ~~~~~~f~~~~-~~~g~  102 (113)
T 1xk4_C           87 WASHEKMHEGD-EGPGH  102 (113)
T ss_dssp             HHHHC------------
T ss_pred             HHHHHHHhhCC-CCCcc
Confidence            33344555555 55554

>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB: 1mr8_A

Probab=99.02  E-value=1.3e-10  Score=87.54  Aligned_cols=62  Identities=18%  Similarity=0.337  Sum_probs=38.5

Q ss_pred             HHHHHHHHhCC-CCCC-cccHHHHHHHH-HHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy2947         372 EVVDAFKAADT-TKSG-TVPAKYLKHVL-VNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA  433 (441)
Q Consensus       372 ~~~~~f~~~D~-~~~G-~is~~ef~~~l-~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l  433 (441)
                      .++.+|+.+|. |++| .|+.+||+.++ +.+|..++.++++.+++.+|.|++|.|+|+||+.++
T Consensus        11 ~l~~~F~~~D~~d~dG~~I~~~El~~~l~~~~g~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~~   75 (93)
T 1xk4_A           11 SIIDVYHKYSLIKGNFHAVYRDDLKKLLETESPQYIRKKGADVWFKELDINTDGAVNFQEFLILV   75 (93)
T ss_dssp             HHHHHHHHHHTSSSCTTCBCHHHHHHHHHHHSCHHHHTTCHHHHHHHHCTTCSSSBCHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCCcCeECHHHHHHHHHHHCcccCCHHHHHHHHHHhCCCCCCCCcHHHHHHHH
Confidence            45566666666 6666 66666666666 455544444555666666666666666666666655

>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5

Probab=99.02  E-value=5.7e-10  Score=78.07  Aligned_cols=64  Identities=22%  Similarity=0.336  Sum_probs=57.2

Q ss_pred             HHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         335 EVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       335 ~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      +++.+|+.+|.|++|.|+.+||..++... ......+++..+|+.+|.+++|.|+++||..++..
T Consensus         2 ~l~~~F~~~D~d~~G~i~~~el~~~l~~~-~~~~~~~~~~~~~~~~D~~~dg~i~~~ef~~~~~~   65 (67)
T 1tiz_A            2 SAKRVFEKFDKNKDGKLSLDEFREVALAF-SPYFTQEDIVKFFEEIDVDGNGELNADEFTSCIEK   65 (67)
T ss_dssp             THHHHHHHHCTTSSSCEEHHHHHHHHHHT-CTTSCHHHHHHHHHHHCCSSSSEECHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCCCCcCcHHHHHHHHHHh-CCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence            46789999999999999999999999876 34455788999999999999999999999999864

>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium free, signaling protein; HET: MSE; 1.15A {Homo sapiens} SCOP: a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A 1jwd_A 2cnp_A 2jtt_A

Probab=99.00  E-value=2.7e-10  Score=85.06  Aligned_cols=64  Identities=17%  Similarity=0.339  Sum_probs=54.6

Q ss_pred             HHHHHHHHHhC-CCCCC-cccHHHHHHHHHH---hCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         371 KEVVDAFKAAD-TTKSG-TVPAKYLKHVLVN---WGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       371 ~~~~~~f~~~D-~~~~G-~is~~ef~~~l~~---~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      +.++.+|+.+| ++++| .|+.+||+.+++.   +|..+++++++.+++.+|.|++|.|+|+||+.++.
T Consensus        10 ~~l~~~F~~~D~~d~~G~~i~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~   78 (90)
T 1k8u_A           10 GLLVAIFHKYSGREGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDLDRNKDQEVNFQEYVTFLG   78 (90)
T ss_dssp             HHHHHHHHHHHTSSSCTTEEEHHHHHHHHHHHSCCGGGTTSHHHHHHHHHHHHTTTCEEEHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCCCcCCHHHHHHHHHHhcccCCCCCHHHHHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence            46778889999 59999 9999999999887   78778888888999999888899999999988774

>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}

Probab=98.99  E-value=4e-09  Score=78.97  Aligned_cols=68  Identities=24%  Similarity=0.293  Sum_probs=60.5

Q ss_pred             HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhC
Q psy2947         333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWG  401 (441)
Q Consensus       333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~  401 (441)
                      .+.++.+|+.+|.|++|.|+.+||..++... ......+++..+|+.+|.+++|.|+++||..++....
T Consensus         8 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~-g~~~~~~~~~~l~~~~d~~~dg~i~~~eF~~~~~~~~   75 (92)
T 2kn2_A            8 EEELKEAFKVFDKDQNGYISASELRHVMINL-GEKLTDEEVEQMIKEADLDGDGQVNYEEFVKMMMTVR   75 (92)
T ss_dssp             HHHHHHHHHHHCTTCSSEECHHHHHHHHHHT-TCCCCHHHHHHHHHHHCSSCCSSEEHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCCCCeEcHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHhcc
Confidence            4678999999999999999999999999887 3445678899999999999999999999999998753

>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A

Probab=98.99  E-value=2.3e-09  Score=79.14  Aligned_cols=67  Identities=21%  Similarity=0.203  Sum_probs=60.5

Q ss_pred             HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhC
Q psy2947         333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWG  401 (441)
Q Consensus       333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~  401 (441)
                      .+.++.+|+.+|.|++|.|+.+||..++....  ....+++..+|+.+|.+++|.|+++||..++....
T Consensus        10 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g--~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~~~   76 (86)
T 2opo_A           10 IADRERIFKRFDTNGDGKISSSELGDALKTLG--SVTPDEVRRMMAEIDTDGDGFISFDEFTDFARANR   76 (86)
T ss_dssp             HHHHHHHHHHHCTTCSSEEEHHHHHHHHHTTT--TCCHHHHHHHHHHHCTTCSSEECHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHCCCCCCCcCHHHHHHHHHHcC--CCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHCc
Confidence            45688999999999999999999999998874  56678999999999999999999999999998753

>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding protein; 1.45A {Homo sapiens} SCOP: a.39.1.2 PDB: 3nsi_A 1kso_A 3nsk_A 3nsl_A

Probab=98.98  E-value=1e-09  Score=83.25  Aligned_cols=67  Identities=15%  Similarity=0.076  Sum_probs=58.3

Q ss_pred             HHHHHHHHhhc-CCCC-CcccHHHHHHHHHh-h---ccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         334 KEVVDAFKAAD-TTKS-GKLSFPDFLKVMHT-H---SKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       334 ~~~~~~f~~~D-~d~~-g~i~~~ef~~~~~~-~---~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      +.++++|+.|| .||+ |+|+.+|++.++.. +   .+.....++++.+|+.+|.|+||.|+++||..++..+
T Consensus        10 ~~l~~aF~~fd~~dg~~G~Is~~EL~~~l~~~l~~~lg~~~~~~ev~~~i~~~D~dgDG~Idf~EF~~~~~~~   82 (101)
T 3nso_A           10 AAIVCTFQEYAGRCGDKYKLCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCEVDFVEYVRSLACL   82 (101)
T ss_dssp             HHHHHHHHHHHTTSSCTTEECHHHHHHHHHHHTTTCCCCTTCHHHHHHHHHHHHHCCCSCEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCCCCCEECHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence            57889999998 8987 99999999999985 3   1345567899999999999999999999999998763

>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II, calcium/phospholipid binding protein, calcium-phospholipid protein complex; 2.25A {Homo sapiens} SCOP: a.39.1.2 PDB: 1bt6_A

Probab=98.98  E-value=3.8e-10  Score=85.27  Aligned_cols=63  Identities=14%  Similarity=0.295  Sum_probs=38.0

Q ss_pred             HHHHHHHHHhCCCCCCcccHHHHHHHHHH-----hCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         371 KEVVDAFKAADTTKSGTVPAKYLKHVLVN-----WGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       371 ~~~~~~f~~~D~~~~G~is~~ef~~~l~~-----~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      +.++.+|+.||. ++|+|+.+||+.+++.     +|..+++++++.+++.+|.|+||.|+|+||+.+|.
T Consensus         9 ~~l~~~F~~fD~-~dg~Is~~El~~~l~~~~~~~lg~~~~~~ev~~l~~~~D~d~dG~I~f~EF~~~~~   76 (96)
T 1a4p_A            9 ETMMFTFHKFAG-DKGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVGFQSFFSLIA   76 (96)
T ss_dssp             HHHHHHHHHHHG-GGCSBCHHHHHHHHHHHCHHHHHHSCCTTHHHHHHHHHCTTSSSCBCHHHHHHHHH
T ss_pred             HHHHHHHHHHcC-CCCeECHHHHHHHHHHHcccccccccCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence            345566666662 4456666666666654     34445566666666666666666666666666554

>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10

Probab=98.98  E-value=1.3e-09  Score=78.83  Aligned_cols=65  Identities=20%  Similarity=0.244  Sum_probs=59.3

Q ss_pred             HHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       334 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      ++++.+|+.+|.|++|.|+.+||..++....  ....+++..+|+.+|.+++|.|+++||..++...
T Consensus         3 ~~l~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~~~~~~~D~~~dg~i~~~ef~~~~~~~   67 (78)
T 1k9u_A            3 DDMERIFKRFDTNGDGKISLSELTDALRTLG--STSADEVQRMMAEIDTDGDGFIDFNEFISFCNAN   67 (78)
T ss_dssp             CHHHHHHHHHCTTCSSEECHHHHHHHHHHHH--TCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHC
T ss_pred             HHHHHHHHHHCCCCCCcCcHHHHHHHHHHhC--CCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHC
Confidence            4688999999999999999999999998874  5667899999999999999999999999999764

>1psr_A Psoriasin, S100A7; EF-hand protein, MAD phasing, psoriasis, S100 protein family; 1.05A {Homo sapiens} SCOP: a.39.1.2 PDB: 2psr_A 2wor_A* 2wos_A* 3psr_A 2wnd_A

Probab=98.97  E-value=2.3e-10  Score=87.19  Aligned_cols=62  Identities=10%  Similarity=0.281  Sum_probs=37.0

Q ss_pred             HHHHHHHHhCCCCCCcccHHHHHHHHHH-----hCC--CCCHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         372 EVVDAFKAADTTKSGTVPAKYLKHVLVN-----WGE--GLSSKEVDQIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       372 ~~~~~f~~~D~~~~G~is~~ef~~~l~~-----~~~--~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      +++.+|+.||.+ +|+|+.+||+.+++.     +|.  .+++++++.+++.+|.|+||.|+|+||+.+|.
T Consensus        11 ~l~~~F~~fD~~-~g~Is~~El~~~l~~~~~~~lg~~~~~~~~ev~~l~~~~D~d~dG~I~f~EF~~~~~   79 (100)
T 1psr_A           11 GMIDMFHKYTRR-DDKIDKPSLLTMMKENFPNFLSACDKKGTNYLADVFEKKDKNEDKKIDFSEFLSLLG   79 (100)
T ss_dssp             HHHHHHHHTCCT-TSCBCHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHCTTCSSCBCHHHHHHHHH
T ss_pred             HHHHHHHHHhCC-CCeECHHHHHHHHHHHhHhhhccccccCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence            455566666644 566666666666654     232  34555566666666666666666666666553

>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB: 1irj_A*

Probab=98.96  E-value=1.8e-09  Score=84.21  Aligned_cols=65  Identities=11%  Similarity=0.303  Sum_probs=57.4

Q ss_pred             HHHHHHHHHhCC-CCCC-cccHHHHHHHHH-HhCCC-----CCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         371 KEVVDAFKAADT-TKSG-TVPAKYLKHVLV-NWGEG-----LSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       371 ~~~~~~f~~~D~-~~~G-~is~~ef~~~l~-~~~~~-----l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      +.++.+|+.||. |++| +|+.+||+.+|+ .+|..     +++++++.+|+.+|.|+||.|+|+||+.++.+
T Consensus        12 ~~l~~~F~~fD~~dgdG~~Is~~El~~~l~~~lg~~~~~~~~~~~~v~~l~~~~D~d~dG~I~f~EF~~~~~~   84 (113)
T 1xk4_C           12 ETIINTFHQYSVKLGHPDTLNQGEFKELVRKDLQNFLKKENKNEKVIEHIMEDLDTNADKQLSFEEFIMLMAR   84 (113)
T ss_dssp             HHHHHHHHHHHTTSSSTTSBCHHHHHHHHHHHTTTTTTTGGGCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCCCCCEECHHHHHHHHHHHhhhhhcccccCHHHHHHHHHHhCCCCCCCEeHHHHHHHHHH
Confidence            357789999994 9999 999999999999 67742     67899999999999999999999999998854

>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}

Probab=98.93  E-value=2.3e-09  Score=77.25  Aligned_cols=66  Identities=17%  Similarity=0.316  Sum_probs=58.6

Q ss_pred             HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      .+.++.+|+.+|.|++|.|+.+||..++... +.....+++..+|+.+|.+++|.|+++||..++..
T Consensus         6 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~-g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~   71 (77)
T 2joj_A            6 KQEIKEAFDLFDTNKTGSIDYHELKVAMRAL-GFDVKKPEILELMNEYDREGNGYIGFDDFLDIMTE   71 (77)
T ss_dssp             HHHHHHHHHHHCCSSSSEEEHHHHHHHHHHH-TCCCHHHHHHHHHHHHCCSSSSEEEHHHHHHHHTH
T ss_pred             HHHHHHHHHHhCCCCCCCCcHHHHHHHHHHh-CCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence            3568899999999999999999999999887 34455788999999999999999999999999865

>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence, southeast collabora structural genomics, secsg, structural genomics, PSI; HET: CTZ; 1.72A {Renilla muelleri} PDB: 2hq8_A

Probab=98.93  E-value=4e-10  Score=96.50  Aligned_cols=90  Identities=13%  Similarity=0.207  Sum_probs=69.1

Q ss_pred             HhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHH--HhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCC
Q psy2947         308 AEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAF--KAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKS  385 (441)
Q Consensus       308 ~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f--~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~  385 (441)
                      .+++|.|+++|  .++..........+++...|  +.||.|++|.|+++||..++... +.....+++..+|+.+|.|++
T Consensus        76 ~d~dg~I~~~E--~~~~~~~~~~~~~~~~~~~f~~~~fD~d~~G~I~~~E~~~~l~~~-g~~~~~~~~~~~~~~~D~d~d  152 (186)
T 2hps_A           76 ISVEEAAVNAT--DSLLKMKGEEKAMAVIQSLIMYDCIDTDKDGYVSLPEFKAFLQAV-GPDLTDDKAITCFNTLDFNKN  152 (186)
T ss_dssp             EEHHHHHHHHH--HHHHHCCTHHHHHTTHHHHHHHHHHCTTCSSEEEHHHHHHHHHHH-CTTCCHHHHHHHHHHHCTTCS
T ss_pred             CCCCCcccHHH--HHHHHhcCChHHHHHHHHHHHHHHccCCCCCcCCHHHHHHHHHHh-CCCCCHHHHHHHHHHHcCCCC
Confidence            45678888888  44443322111123445555  78899999999999999999887 344567899999999999999


Q ss_pred             CcccHHHHHHHHHHh
Q psy2947         386 GTVPAKYLKHVLVNW  400 (441)
Q Consensus       386 G~is~~ef~~~l~~~  400 (441)
                      |.|+++||.+++...
T Consensus       153 G~i~~~ef~~~~~~~  167 (186)
T 2hps_A          153 GQISRDEFLVTVNDF  167 (186)
T ss_dssp             SEEEHHHHHHHHHHH
T ss_pred             CcCcHHHHHHHHHHH
Confidence            999999999999874

>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural genomics, PSI-B protein structure initiative, NEW YORK structural genomics consortium; 1.54A {Homo sapiens} PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*

Probab=98.93  E-value=3.5e-09  Score=79.23  Aligned_cols=68  Identities=10%  Similarity=0.052  Sum_probs=56.4

Q ss_pred             HHHHHHHHHhhc-CCCC-CcccHHHHHHHHHh-hc---cCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         333 PKEVVDAFKAAD-TTKS-GKLSFPDFLKVMHT-HS---KAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       333 ~~~~~~~f~~~D-~d~~-g~i~~~ef~~~~~~-~~---~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      .+.++++|+.|| .||+ |+|+.+|+++++.. +.   ......++++.+++.+|.|+||.|+++||..++..+
T Consensus         9 ~~~l~~~F~~fd~~dg~~G~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~~~D~d~DG~Idf~EF~~~~~~~   82 (93)
T 4eto_A            9 LDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCI   82 (93)
T ss_dssp             HHHHHHHHHHHHTSSSSTTSBCHHHHHHHHHHHCGGGC---CCHHHHHHHHHHHCTTSSSSBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccCCCCCeECHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHH
Confidence            357889999998 6885 89999999999985 32   223457889999999999999999999999999764

>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica}

Probab=98.93  E-value=5e-10  Score=78.15  Aligned_cols=62  Identities=16%  Similarity=0.223  Sum_probs=53.8

Q ss_pred             HHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         337 VDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       337 ~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      +.+|+.+|.|++|.|+.+||..++.... .....++++.+|+.+|.+++|.|+++||..++..
T Consensus         3 ~~~F~~~D~d~~G~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~D~~~~g~i~~~ef~~~~~~   64 (66)
T 3li6_A            3 EALFKEIDVNGDGAVSYEEVKAFVSKKR-AIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYGS   64 (66)
T ss_dssp             CHHHHHHCTTCSSSCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHTC
T ss_pred             HHHHHHHCCCCCCcccHHHHHHHHHHcc-CCCcHHHHHHHHHHHCCCCCCCCCHHHHHHHHHh
Confidence            5789999999999999999999998762 2333568899999999999999999999999854

>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens}

Probab=98.93  E-value=4.1e-09  Score=80.44  Aligned_cols=67  Identities=10%  Similarity=0.077  Sum_probs=57.1

Q ss_pred             HHHHHHHHhhc-CCCC-CcccHHHHHHHHHh-hc---cCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         334 KEVVDAFKAAD-TTKS-GKLSFPDFLKVMHT-HS---KAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       334 ~~~~~~f~~~D-~d~~-g~i~~~ef~~~~~~-~~---~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      ++++++|+.|| .|++ |+|+.+||+.++.. +.   ......++++.+|+.+|.|+||.|+++||..++..+
T Consensus        13 ~~l~~aF~~fD~~dgd~G~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~~~D~dgDG~Idf~EF~~~m~~~   85 (104)
T 3zwh_A           13 DVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSWLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSSI   85 (104)
T ss_dssp             HHHHHHHHHHHTSSSSTTSBCHHHHHHHHHHHCGGGSCSSCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHcchhccCCCCHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHH
Confidence            57889999998 7785 89999999999985 32   233457899999999999999999999999999764

>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein, solution structure, backbone dynamic, structural genomics; NMR {Homo sapiens}

Probab=98.93  E-value=1.5e-09  Score=76.96  Aligned_cols=67  Identities=18%  Similarity=0.237  Sum_probs=59.5

Q ss_pred             CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy2947         331 DIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLV  398 (441)
Q Consensus       331 ~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~  398 (441)
                      ...+.++.+|+.+|.|++|.|+.+||..++... ......++++.+|+.+|.+++|.|+++||..++.
T Consensus         3 ~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~   69 (71)
T 2b1u_A            3 AGLEDLQVAFRAFDQDGDGHITVDELRRAMAGL-GQPLPQEELDAMIREADVDQDGRVNYEEFARMLA   69 (71)
T ss_dssp             TTHHHHHHHHTTSCCSSSSEEEHHHHHHHGGGT-TCSSCHHHHHHHHHHCCSSSSSEEETTHHHHHHT
T ss_pred             ccHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHh
Confidence            356789999999999999999999999999876 3445678899999999999999999999999874

>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding protein; NMR {Homo sapiens} SCOP: a.39.1.7

Probab=98.92  E-value=2.5e-09  Score=82.05  Aligned_cols=64  Identities=11%  Similarity=0.236  Sum_probs=50.7

Q ss_pred             HHHHHHHHhCCCCCCcccHHHHHHHHHH-----hCCCCCH-----------HHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         372 EVVDAFKAADTTKSGTVPAKYLKHVLVN-----WGEGLSS-----------KEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       372 ~~~~~f~~~D~~~~G~is~~ef~~~l~~-----~~~~l~~-----------~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      .++.+|+.+|.|++|+|+.+||+.++..     .|...+.           ..+..+|+.+|.|+||.|+++||+.++.+
T Consensus        21 ~~~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~g~~~~~~~~~~~~e~~~~~~~~~~~~~D~d~dG~Is~~EF~~~~~~  100 (103)
T 1snl_A           21 NPKTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVMKNVDTNQDRLVTLEEFLASTQR  100 (103)
T ss_dssp             CHHHHHHHHCSSCCSEEEHHHHHHHHHHHHHTTSCCSSCSSHHHHTTHHHHHHHHHHHHHTCSSCSSEEEHHHHHHHHHC
T ss_pred             CHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHHHHcCCCCCCcCCHHHHHHHHhc
Confidence            4677888888888888888888888876     3543332           34788999999999999999999988865

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1

Probab=98.92  E-value=6.6e-10  Score=118.17  Aligned_cols=120  Identities=12%  Similarity=0.144  Sum_probs=97.7

Q ss_pred             cccHHHHHHHHHhhcCC-----------CC---CHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHH
Q psy2947         313 KLSFPDFLKVMHTHSKA-----------ED---IPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFK  378 (441)
Q Consensus       313 ~i~~~ef~~~~~~~~~~-----------~~---~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~  378 (441)
                      .+.+++|...+......           ..   ....+..+|+.||.|++|.|+.+||..++.... .....+.+..+|.
T Consensus       690 ~i~~~eF~~~~~~~~~~~e~~~l~~~~~~l~~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~g-~~~~~~~~~~~~~  768 (863)
T 1sjj_A          690 RVGWEQLLTTIARTINEVENQILTRDAKGISQEQMNEFRASFNHFDRKKTGMMDCEDFRACLISMG-YNMGEAEFARIMS  768 (863)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHHHHHHHTTTCSSSSSEEESTTHHHHHHHHT-CCCCTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhhccCCCHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHcC-CCCCHHHHHHHHH
Confidence            57788887766543211           11   235689999999999999999999999998873 3455788999999


Q ss_pred             HhCCCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         379 AADTTKSGTVPAKYLKHVLVNWG-EGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       379 ~~D~~~~G~is~~ef~~~l~~~~-~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      .+|.|++|.|+++||..++.... ...+.+.+..+|+.+ .|++|.|+.+||..++.
T Consensus       769 ~~D~d~dG~I~~~EF~~~~~~~~~~~~~~~~l~~aF~~~-~d~~G~Is~~El~~~l~  824 (863)
T 1sjj_A          769 IVDPNRMGVVTFQAFIDFMSRETADTDTADQVMASFKIL-AGDKNYITVDELRRELP  824 (863)
T ss_dssp             HHCTTSCSEEETTHHHHTHHHHSTTCSSSHHHHHHHHGG-GTSSSEEEHHHHHHHSC
T ss_pred             HhCCCCCCcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHH-hCCCCcCcHHHHHHHCC
Confidence            99999999999999999998753 234567899999999 89999999999998763

>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7

Probab=98.91  E-value=3.7e-09  Score=81.32  Aligned_cols=85  Identities=12%  Similarity=0.108  Sum_probs=68.8

Q ss_pred             cccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHH
Q psy2947         313 KLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKY  392 (441)
Q Consensus       313 ~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~e  392 (441)
                      .++++++...+.....  .....++.+|+.||.|++|.|+.+||..++... ......++++.+|..+|.+++|.|+++|
T Consensus         5 ~~~~~~~~~~l~~~~~--~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~-g~~~~~~e~~~l~~~~d~~~~g~i~~~e   81 (105)
T 1wlz_A            5 ATADRDILARLHKAVT--SHYHAITQEFENFDTMKTNTISREEFRAICNRR-VQILTDEQFDRLWNEMPVNAKGRLKYPD   81 (105)
T ss_dssp             TTCCHHHHHHHHHHHH--HTHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHH-TCCCCHHHHHHHHTTSCBCTTSCBCHHH
T ss_pred             chhHHHHHHHHHHHHH--chHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHh-CCCCCHHHHHHHHHHcCCCCCCCCcHHH
Confidence            4556666666654432  245789999999999999999999999999887 3445678999999999999999999999


Q ss_pred             HHHHHHHh
Q psy2947         393 LKHVLVNW  400 (441)
Q Consensus       393 f~~~l~~~  400 (441)
                      |..++...
T Consensus        82 F~~~~~~~   89 (105)
T 1wlz_A           82 FLSRFSSE   89 (105)
T ss_dssp             HHHHHC--
T ss_pred             HHHHHhcc
Confidence            99999753

>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A

Probab=98.91  E-value=5.6e-09  Score=77.85  Aligned_cols=66  Identities=21%  Similarity=0.243  Sum_probs=59.0

Q ss_pred             HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      ...++.+|+.+|.|++|.|+.+||..++... +.....+++..+|+.+|.+++|.|+++||..++..
T Consensus        19 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~-g~~~~~~~~~~l~~~~D~~~dg~i~~~eF~~~~~~   84 (90)
T 1avs_A           19 IAEFKAAFDMFDADGGGDISTKELGTVMRML-GQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVR   84 (90)
T ss_dssp             HHHHHHHHHHHCTTCSSEECHHHHHHHHHHT-TCCCCHHHHHHHHHHHCTTCCSSEEHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHHH
Confidence            3568899999999999999999999999887 34556788999999999999999999999999875

>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}

Probab=98.91  E-value=4e-09  Score=78.86  Aligned_cols=64  Identities=17%  Similarity=0.321  Sum_probs=57.6

Q ss_pred             HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      .+.++.+|+.+|.|++|.|+.+||..++....   ...++++.+|+.+|.+++|.|+++||..++..
T Consensus        26 ~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g---~~~~~~~~~~~~~D~d~dg~I~~~EF~~~~~~   89 (91)
T 2pmy_A           26 LARLRSVFAACDANRSGRLEREEFRALCTELR---VRPADAEAVFQRLDADRDGAITFQEFARGFLG   89 (91)
T ss_dssp             HHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTT---CCHHHHHHHHHHHCTTCSSEECHHHHTHHHHH
T ss_pred             HHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcC---cCHHHHHHHHHHhCCCCCCCEeHHHHHHHHHH
Confidence            35688999999999999999999999998773   45788999999999999999999999999875

>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A

Probab=98.91  E-value=6.1e-09  Score=92.36  Aligned_cols=89  Identities=12%  Similarity=0.148  Sum_probs=74.4

Q ss_pred             HHhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhc------------cCCCChHHHH
Q psy2947         307 LAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHS------------KAEDIPKEVV  374 (441)
Q Consensus       307 ~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~------------~~~~~~~~~~  374 (441)
                      +.+++|.|++.||..++.... ....+++++.+|+.|| |++|.|+++|+..+++...            .....++.++
T Consensus       142 D~~~~G~I~f~ef~~aLs~l~-rG~leeKL~w~F~lyD-D~~G~I~~~El~~il~~i~~i~~~vge~~~~~~~~~e~~v~  219 (261)
T 1eg3_A          142 DTGRTGRIRVLSFKTGIISLC-KAHLEDKYRYLFKQVA-SSTGFCDQRRLGLLLHDSIQIPRQLGEVASFGGSNIEPSVR  219 (261)
T ss_dssp             CTTCCSEEEHHHHHHHHHHTS-SSCHHHHHHHHHHHHS-CTTSCBCHHHHHHHHHHHHHHHHHTTCGGGGTCSCCHHHHH
T ss_pred             cCCCCceEeHHHHHHHHHHHc-CCCHHHHHHHHHheee-CCCCCCcHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHH
Confidence            357899999999999998764 4566789999999999 9999999999999885521            1223467889


Q ss_pred             HHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         375 DAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       375 ~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      .+|+.+|  +||.|+.+||...++.
T Consensus       220 ~~F~~~d--~dg~It~~EFl~~~~~  242 (261)
T 1eg3_A          220 SCFQFAN--NKPEIEAALFLDWMRL  242 (261)
T ss_dssp             HHHHHTT--TCSCBCHHHHHHHHHT
T ss_pred             HHHHhCC--CCCcCCHHHHHHHHHh
Confidence            9999996  8999999999999875

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.90  E-value=1.5e-10  Score=114.07  Aligned_cols=154  Identities=20%  Similarity=0.148  Sum_probs=91.3

Q ss_pred             CCcccEEeccCCCcCc----cc-CCCC----CCCEEEccCCCCC-----cCCcCccCCCCCcEEEccCCcCCCCCCchhh
Q psy2947          60 FSHAFLLSLSYTPIGR----RI-FKCD----TVEVLSLKSNSLT-----SLPPDIGRLTNLRVLCLTDNCLQNASIPFTL  125 (441)
Q Consensus        60 l~~L~~l~l~~n~i~~----~~-~~l~----~L~~L~l~~n~l~-----~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~  125 (441)
                      +++|+.|++++|.+..    .+ ..++    +|++|+|++|.++     .+|..+..+++|++|++++|.++ ...+..+
T Consensus        55 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~-~~~~~~l  133 (461)
T 1z7x_W           55 NPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG-DAGLQLL  133 (461)
T ss_dssp             CTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH-HHHHHHH
T ss_pred             CCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCc-hHHHHHH
Confidence            5677888888876532    11 1233    5888888888877     35666777888888888888775 2222222


Q ss_pred             h-----cCCCCCEEEccCCCCCc-----cchhhcCCCCCCEEEccCCcCccCccccccccccccccc-ccchhHHH-Hhh
Q psy2947         126 T-----FCKNLTHLYLDNNLLDA-----LPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIR-STSTRDEV-LRK  193 (441)
Q Consensus       126 ~-----~l~~L~~L~l~~n~l~~-----lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~-~l~~~~~~-l~~  193 (441)
                      .     ..++|++|++++|+++.     ++..+..+++|+.|++++|.+.....     ..+...+. ..+.+..+ +.+
T Consensus       134 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~-----~~l~~~l~~~~~~L~~L~L~~  208 (461)
T 1z7x_W          134 CEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV-----RVLCQGLKDSPCQLEALKLES  208 (461)
T ss_dssp             HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH-----HHHHHHHHHSCCCCCEEECTT
T ss_pred             HHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH-----HHHHHHHhcCCCCceEEEccC
Confidence            2     24568888888887753     34556667788888888887522110     00111111 11122233 455


Q ss_pred             ccccc-----CCchhhhhhhhcccccccccC
Q psy2947         194 QKKLH-----QPSRLQDLAVQSVIASKENFF  219 (441)
Q Consensus       194 ~~~~~-----~p~~l~~l~~l~~l~l~~n~~  219 (441)
                      |.+..     ++..+..++.|+.|++++|.+
T Consensus       209 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l  239 (461)
T 1z7x_W          209 CGVTSDNCRDLCGIVASKASLRELALGSNKL  239 (461)
T ss_dssp             SCCBTTHHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred             CCCcHHHHHHHHHHHHhCCCccEEeccCCcC
Confidence            55543     455666777778887777754

>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO, EF-hand calcium binding proteins, S100 proteins, protein dynamics, binding protein; 2.10A {Homo sapiens} SCOP: a.39.1.0 PDB: 2l0u_A 2l0v_A 2l50_A 2l51_A

Probab=98.90  E-value=7.1e-09  Score=78.64  Aligned_cols=69  Identities=12%  Similarity=0.076  Sum_probs=57.8

Q ss_pred             HHHHHHHHHhhcCCC---CCcccHHHHHHHHHhhccCCC----ChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhC
Q psy2947         333 PKEVVDAFKAADTTK---SGKLSFPDFLKVMHTHSKAED----IPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWG  401 (441)
Q Consensus       333 ~~~~~~~f~~~D~d~---~g~i~~~ef~~~~~~~~~~~~----~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~  401 (441)
                      .++++++|+.||.++   +|+|+.+|++.++........    ..++++.+|+.+|.|+||.|+++||..+|..+.
T Consensus        10 i~~l~~~F~~fD~~~g~~~G~Is~~EL~~~l~~~~~~~l~~~~~~~ev~~~i~~~D~d~DG~Idf~EF~~~m~~~~   85 (100)
T 3nxa_A           10 VIVLVENFYKYVSKYSLVKNKISKSSFREMLQKELNHMLSDTGNRKAADKLIQNLDANHDGRISFDEYWTLIGGIT   85 (100)
T ss_dssp             HHHHHHHHHHTSCTTCSCTTCBCHHHHHHHHHHHSTTTTCSSHHHHHHHHHHHHSCCCSSCCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcCCCCCCeEcHHHHHHHHHHHccccccccccHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence            357899999999964   799999999999986533222    257899999999999999999999999998754

>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A

Probab=98.90  E-value=5.3e-09  Score=80.97  Aligned_cols=68  Identities=10%  Similarity=0.071  Sum_probs=57.7

Q ss_pred             HHHHHHHHHhhc-CCCCC-cccHHHHHHHHHhh----ccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         333 PKEVVDAFKAAD-TTKSG-KLSFPDFLKVMHTH----SKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       333 ~~~~~~~f~~~D-~d~~g-~i~~~ef~~~~~~~----~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      .++++.+|+.|| .|++| +|+.+||+.++...    ......+++++.+|+.+|.|+||.|+++||..++...
T Consensus        21 ~~~l~~aF~~fD~~dgdGG~Is~~EL~~~l~~~l~~~lg~~~t~~ev~~li~~~D~dgdG~Idf~EF~~~m~~~   94 (113)
T 2lnk_A           21 LDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCI   94 (113)
T ss_dssp             HHHHHHHHHHTTTTTSCTTCBCHHHHHHHHHHHCGGGGTTCCCTTHHHHHHHHHCSSSSSCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccCCCCCEECHHHHHHHHHHHcchhcCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHH
Confidence            357899999999 89997 99999999999752    1234456789999999999999999999999998753

>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100 family, EF-hand protein, complex (ligand/annexin), ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2 PDB: 1nsh_A

Probab=98.89  E-value=1.5e-09  Score=82.60  Aligned_cols=62  Identities=5%  Similarity=0.263  Sum_probs=33.7

Q ss_pred             HHHHHHHHhC-CCCCC-cccHHHHHHHHHH-h----CCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy2947         372 EVVDAFKAAD-TTKSG-TVPAKYLKHVLVN-W----GEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA  433 (441)
Q Consensus       372 ~~~~~f~~~D-~~~~G-~is~~ef~~~l~~-~----~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l  433 (441)
                      .++.+|+.+| .+++| .|+.+||+.+++. +    |..+++++++.+++.+|.|++|.|+|+||+.++
T Consensus        14 ~l~~~F~~~Dd~d~~G~~I~~~el~~~l~~~~~~~~~~~~~~~~~~~l~~~~D~~~dg~I~~~EF~~~~   82 (99)
T 1qls_A           14 SLIAIFQKHAGRDGNNTKISKTEFLIFMNTELAAFTQNQKDPGVLDRMMKKLDLDSDGQLDFQEFLNLI   82 (99)
T ss_dssp             HHHHHHHHHHTTSSCTTCBCHHHHHHHHTTTSHHHHHHCCCTHHHHHHHHHHCTTCSSSBCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCcCeeCHHHHHHHHHHHcchhccccCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence            4445555554 55555 5555555555542 2    234455555555555555555555555555544

>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A

Probab=98.89  E-value=1.5e-09  Score=79.25  Aligned_cols=70  Identities=23%  Similarity=0.303  Sum_probs=60.0

Q ss_pred             CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhC
Q psy2947         331 DIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWG  401 (441)
Q Consensus       331 ~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~  401 (441)
                      ...+.++ +|+.||.|++|.|+.+||..++..........+++..+|+.+|.+++|.|+++||..++....
T Consensus         6 ~~~~~l~-~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~~~   75 (81)
T 1c7v_A            6 DEEEILR-AFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDIPEFMDLIKKSK   75 (81)
T ss_dssp             -CHHHHH-HHHHHSCSGGGEECHHHHHHHSSTTTTCCCCHHHHHHHHHHHCSSGGGSEEHHHHHHHHHCC-
T ss_pred             cHHHHHH-HHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHhhh
Confidence            4567899 999999999999999999999987631445678999999999999999999999999997543

>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6

Probab=98.88  E-value=4.7e-09  Score=78.59  Aligned_cols=63  Identities=13%  Similarity=0.094  Sum_probs=56.5

Q ss_pred             HHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       334 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      .+++++|+.+|.|++|+|+.+|++.++....   ...+++..+|+.+|.|++|.|+++||..+|..
T Consensus         9 ~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g---~~~~~~~~i~~~~D~d~dG~i~~~EF~~~~~~   71 (92)
T 1fi6_A            9 QYYVNQFKTIQPDLNGFIPGSAAKEFFTKSK---LPILELSHIWELSDFDKDGALTLDEFCAAFHL   71 (92)
T ss_dssp             HHHHHHHTTTCCSTTCEEEHHHHHHHHHHHS---SCHHHHHHHHHHHCTTCSSEEEHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCCcCcHHHHHHHHHHcC---CCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
Confidence            5678899999999999999999999998762   44678999999999999999999999999865

>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6

Probab=98.88  E-value=3.1e-09  Score=80.64  Aligned_cols=64  Identities=11%  Similarity=0.074  Sum_probs=57.9

Q ss_pred             HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      .++++++|+.+|.|++|+|+.+|++.++....   ...+++..+|+.+|.|++|.|+++||..+|..
T Consensus        10 ~~~~~~~F~~~D~d~dG~Is~~el~~~l~~~~---l~~~~l~~i~~~~D~d~dG~i~~~EF~~~~~~   73 (99)
T 1qjt_A           10 NPVYEKYYRQVEAGNTGRVLALDAAAFLKKSG---LPDLILGKIWDLADTDGKGVLSKQEFFVALRL   73 (99)
T ss_dssp             CTHHHHHHHHHCCTTSSCCCSHHHHHHHHTSS---SCHHHHHHHHHHHCCSSSSSCCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCCcCCHHHHHHHHHHcC---CCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHH
Confidence            46789999999999999999999999998752   45788999999999999999999999999975

>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand (helix-loop-helix) calcium binding protein, four-HEL domain, protein engineering; HET: FME; 1.44A {Bos taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A 1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A 1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A

Probab=98.88  E-value=3.7e-09  Score=75.93  Aligned_cols=68  Identities=16%  Similarity=0.182  Sum_probs=59.4

Q ss_pred             CHHHHHHHHHhh-cCCCC-CcccHHHHHHHHHhhccCCC--ChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         332 IPKEVVDAFKAA-DTTKS-GKLSFPDFLKVMHTHSKAED--IPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       332 ~~~~~~~~f~~~-D~d~~-g~i~~~ef~~~~~~~~~~~~--~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      ..+.++.+|+.+ |.|++ |.|+.+||..++.... ...  ..++++.+|+.+|.+++|.|+++||..++..+
T Consensus         3 ~~~~l~~~F~~~~D~d~~~G~i~~~el~~~l~~~g-~~~~~~~~~~~~l~~~~D~~~~g~i~~~eF~~~~~~~   74 (76)
T 1qx2_A            3 SPEEIKGAFEVFAAKEGDPNQISKEELKLVMQTLG-PSLLKGMSTLDEMIEEVDKNGDGEVSFEEFLVMMKKI   74 (76)
T ss_dssp             CHHHHHHHHHHHHTSSSCTTSEEHHHHHHHHHHHG-GGSCTTSCSHHHHHHHHCTTCSSEECHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcccCCCcCeECHHHHHHHHHHhC-CCcCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHh
Confidence            457889999999 99999 9999999999998773 233  45678999999999999999999999998764

>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6

Probab=98.88  E-value=3.8e-09  Score=79.61  Aligned_cols=64  Identities=11%  Similarity=0.103  Sum_probs=57.1

Q ss_pred             HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      .++++++|+.+|.|++|+|+.+|++.++....   ...++++.+|+.+|.|++|.|+++||..+|..
T Consensus         9 ~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g---~~~~~~~~i~~~~D~d~dG~i~~~EF~~~~~~   72 (95)
T 1c07_A            9 KAKYDEIFLKTDKDMDGFVSGLEVREIFLKTG---LPSTLLAHIWSLCDTKDCGKLSKDQFALAFHL   72 (95)
T ss_dssp             HHHHHHHHHHHCTTCSSEECHHHHHHHHHTTT---CCHHHHHHHHHHHCTTCSSSEETTTHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcC---CCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHH
Confidence            46788999999999999999999999998762   44788999999999999999999999999864

>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}

Probab=98.87  E-value=5.8e-09  Score=80.97  Aligned_cols=64  Identities=16%  Similarity=0.212  Sum_probs=56.7

Q ss_pred             HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      .++++.+|+.||.|++|+|+.+|+..++..   .....+++..+|+.+|.|++|.|+++||..++..
T Consensus        13 ~~~l~~~F~~~D~d~dG~I~~~El~~~l~~---~~~~~~~~~~i~~~~D~d~dG~I~~~EF~~~~~~   76 (111)
T 2kgr_A           13 RLKYRQLFNSHDKTMSGHLTGPQARTILMQ---SSLPQAQLASIWNLSDIDQDGKLTAEEFILAMHL   76 (111)
T ss_dssp             HHHHHHHHHTTSCSSCCEEEHHHHHHHHHT---TCCCHHHHHHHHHHHCSSCCSEEEHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCCcCcHHHHHHHHHh---CCCCHHHHHHHHHHHCCCCCCCCcHHHHHHHHHH
Confidence            356888999999999999999999999983   3455788999999999999999999999999865

>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A 1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X* 3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A* 3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...

Probab=98.86  E-value=9.5e-09  Score=76.89  Aligned_cols=66  Identities=12%  Similarity=0.201  Sum_probs=56.7

Q ss_pred             HHHHHHHHhhcCCCCC---cccHHHHHHHHHhh----ccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         334 KEVVDAFKAADTTKSG---KLSFPDFLKVMHTH----SKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       334 ~~~~~~f~~~D~d~~g---~i~~~ef~~~~~~~----~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      +.++.+|+.|| +++|   +|+.+|++.++...    .+.....+.++.+|+.+|.|+||.|+++||..++..+
T Consensus         9 ~~l~~~F~~~D-~~dG~~g~Is~~EL~~~l~~~~~~~lg~~~~~~~v~~~~~~~D~d~dG~I~f~EF~~~~~~l   81 (92)
T 3rm1_A            9 VALIDVFHQYS-GREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSNGDGECDFQEFMAFVAMI   81 (92)
T ss_dssp             HHHHHHHHHHH-TSSSSTTSBCHHHHHHHHHHHCTTTSCCCCSHHHHHHHHHHHCTTSSSSBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHc-cCCCCcCeECHHHHHHHHHHHhhhhccCcccHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHH
Confidence            56889999999 7766   99999999999872    1345567899999999999999999999999998764

>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP: a.39.1.1

Probab=98.85  E-value=3.9e-09  Score=76.27  Aligned_cols=69  Identities=16%  Similarity=0.228  Sum_probs=58.8

Q ss_pred             CHHHHHHHHHhhcC-CCCC-cccHHHHHHHHHhhccCCC-ChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         332 IPKEVVDAFKAADT-TKSG-KLSFPDFLKVMHTHSKAED-IPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       332 ~~~~~~~~f~~~D~-d~~g-~i~~~ef~~~~~~~~~~~~-~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      ..+.++.+|+.||. |++| .|+.+||..++........ ..+.++.+|+.+|.+++|.|+++||..++..+
T Consensus         5 ~~~~l~~~F~~~D~~d~~G~~i~~~el~~~l~~~~g~~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~~   76 (78)
T 1cb1_A            5 SPAELKSIFEKYAAKEGDPNQLSKEELKQLIQAEFPSLLKGPRTLDDLFQELDKNGDGEVSFEEFQVLVKKI   76 (78)
T ss_dssp             CHHHHHHHHHHHHTTSSSTTEECHHHHHHHHHHHCSSCCSSCCCSSHHHHHTCCCSSSSEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCCcCEeCHHHHHHHHHHHhhhhcccHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHh
Confidence            46789999999999 9999 9999999999986323323 45678899999999999999999999998764

>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand, helix-loop- helix, nervous system, metal binding protein; NMR {Haemopis marmorata} PDB: 1yx8_A

Probab=98.85  E-value=4.4e-09  Score=77.05  Aligned_cols=69  Identities=19%  Similarity=0.232  Sum_probs=57.9

Q ss_pred             CHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhcc-CCCChHHHHH----HHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         332 IPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSK-AEDIPKEVVD----AFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       332 ~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~-~~~~~~~~~~----~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      ..+.++.+|+.+|.|++|.|+.+||..++..... .....+++..    +|+.+|.+++|.|+++||.+.+..+
T Consensus         5 ~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~D~~~dg~I~~~eF~~~~~~~   78 (83)
T 1yx7_A            5 VKAELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKISKEEFLNANAEL   78 (83)
T ss_dssp             SCTHHHHHHHHHSSSCSSSCSHHHHHHHHHHHTTCTTTTTTTTHHHHHHHHTTTCSSSCSCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHhhHHH
Confidence            4567899999999999999999999999987741 3334556667    9999999999999999999887654

>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein, EF-hand, calcium regulation, oligomer neuronal development, spine2; 2.03A {Danio rerio}

Probab=98.83  E-value=1.2e-08  Score=77.33  Aligned_cols=68  Identities=13%  Similarity=0.174  Sum_probs=57.8

Q ss_pred             HHHHHHHHHhhc-CCCCC-cccHHHHHHHHHhhc----cCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         333 PKEVVDAFKAAD-TTKSG-KLSFPDFLKVMHTHS----KAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       333 ~~~~~~~f~~~D-~d~~g-~i~~~ef~~~~~~~~----~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      .+.++.+|+.|| .|++| +|+.+||+.++....    ......++++.+|+.+|.|++|.|+++||..++...
T Consensus         9 ~~~l~~~F~~fDd~dg~gG~I~~~El~~~l~~~~~~~lg~~~~~~~v~~l~~~~D~d~dG~I~f~EF~~~~~~~   82 (99)
T 2y5i_A            9 MDALITVFHNYSGSEGDKYKLSKGELKELLNAELTDFLMSQKDPMLVEKIMNDLDSNKDNEVDFNEFVVLVAAL   82 (99)
T ss_dssp             HHHHHHHHHHHHTSSSSTTEECHHHHHHHHHHHSGGGGTTSCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCCcCcCCHHHHHHHHHHHhhhhccccccHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence            356889999997 89988 999999999997531    234457889999999999999999999999998764

>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP: a.39.1.2 PDB: 1ozo_A

Probab=98.83  E-value=7.8e-09  Score=77.83  Aligned_cols=68  Identities=12%  Similarity=0.104  Sum_probs=54.4

Q ss_pred             HHHHHHHHHhhc-CCC-CCcccHHHHHHHHHhhc----cCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         333 PKEVVDAFKAAD-TTK-SGKLSFPDFLKVMHTHS----KAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       333 ~~~~~~~f~~~D-~d~-~g~i~~~ef~~~~~~~~----~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      .++++.+|+.|| .|+ +|+|+.+||+.++....    +.....++++.+|+.+|.|++|.|+++||..++...
T Consensus         8 ~~~l~~~F~~fD~~dgd~G~I~~~El~~~l~~~~~~~lg~~~~~~~v~~l~~~~D~d~dG~I~f~EF~~~~~~~   81 (95)
T 1j55_A            8 MGMIIDVFSRYSGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKDLDANGDAQVDFSEFIVFVAAI   81 (95)
T ss_dssp             HHHHHHHHHHHTTSSSCTTEECHHHHHHHHHHHSTTCC------CHHHHHHHHHCSSSSSSEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCCCCcCCHHHHHHHHHHHhHhhcccccCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHH
Confidence            356889999999 798 58999999999997632    223345689999999999999999999999998753

>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium, polymorphism, structural genomics, spine2, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 2kay_A

Probab=98.82  E-value=7.1e-09  Score=77.61  Aligned_cols=67  Identities=16%  Similarity=0.149  Sum_probs=57.5

Q ss_pred             HHHHHHHHhhc-CCCCC-cccHHHHHHHHHhhcc-CCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         334 KEVVDAFKAAD-TTKSG-KLSFPDFLKVMHTHSK-AEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       334 ~~~~~~f~~~D-~d~~g-~i~~~ef~~~~~~~~~-~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      ..++.+|+.|| .|++| .|+.+||+.++..... +......++.+|+.+|.|++|.|+++||..++...
T Consensus        10 ~~l~~~F~~~D~~d~dG~~I~~~El~~~l~~~~~~~~~~~~~i~~~~~~~D~d~dG~I~f~EF~~~~~~~   79 (92)
T 2kax_A           10 TTMVTTFHKYSGREGSKLTLSRKELKELIKKELCLGEMKESSIDDLMKSLDKNSDQEIDFKEYSVFLTML   79 (92)
T ss_dssp             HHHHHHHHHHHTTSSCSSEEEHHHHHHHHHHHSCCTTTCCTTHHHHHHHHTTTCSSEEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCCCCCeeCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence            56889999999 99999 9999999999986422 11456789999999999999999999999999764

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.81  E-value=1.3e-10  Score=111.04  Aligned_cols=155  Identities=16%  Similarity=0.026  Sum_probs=100.9

Q ss_pred             CCcccEEeccCCCcCc--------ccC-CCCCCCEEEccCCCCCc--CCcCccCCCCCcEEEccCCcCCCCCCchhh---
Q psy2947          60 FSHAFLLSLSYTPIGR--------RIF-KCDTVEVLSLKSNSLTS--LPPDIGRLTNLRVLCLTDNCLQNASIPFTL---  125 (441)
Q Consensus        60 l~~L~~l~l~~n~i~~--------~~~-~l~~L~~L~l~~n~l~~--lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~---  125 (441)
                      +++|+.|+|++|.|..        .+. ..++|+.|+|++|.++.  +..-...+.+|+.|+|++|.++ ..-...+   
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~-~~~~~~L~~~  149 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLG-PEACKDLRDL  149 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCC-HHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCC-HHHHHHHHHH
Confidence            4678899999997652        122 23689999999998872  2222334568899999999886 2111222   


Q ss_pred             --hcCCCCCEEEccCCCCCc-----cchhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-Hhhcccc
Q psy2947         126 --TFCKNLTHLYLDNNLLDA-----LPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKL  197 (441)
Q Consensus       126 --~~l~~L~~L~l~~n~l~~-----lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~  197 (441)
                        ...++|++|+|++|.|+.     ++..+..+++|++|+|++|.+.....     ..+...+...+.+..+ +++|.++
T Consensus       150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~-----~~L~~~L~~~~~L~~L~Ls~N~i~  224 (372)
T 3un9_A          150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGL-----ELLAAQLDRNRQLQELNVAYNGAG  224 (372)
T ss_dssp             HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHH-----HHHHHHGGGCSCCCEEECCSSCCC
T ss_pred             HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHH-----HHHHHHHhcCCCcCeEECCCCCCC
Confidence              235789999999998864     44566778889999999998633211     1223344444444444 5666654


Q ss_pred             c-----CCchhhhhhhhcccccccccCC
Q psy2947         198 H-----QPSRLQDLAVQSVIASKENFFE  220 (441)
Q Consensus       198 ~-----~p~~l~~l~~l~~l~l~~n~~~  220 (441)
                      .     ++..+...+.|+.|++++|.+.
T Consensus       225 ~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          225 DTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            3     3345556688999999988754

>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein; 2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A 2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A

Probab=98.81  E-value=7.8e-09  Score=79.23  Aligned_cols=67  Identities=12%  Similarity=0.100  Sum_probs=55.7

Q ss_pred             HHHHHHHHhhc-CCCC-CcccHHHHHHHHHhhccCCC-ChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         334 KEVVDAFKAAD-TTKS-GKLSFPDFLKVMHTHSKAED-IPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       334 ~~~~~~f~~~D-~d~~-g~i~~~ef~~~~~~~~~~~~-~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      ++++.+|+.|| .|++ |+|+.+||..++........ ..+++..+|+.+|.|+||.|+++||..++...
T Consensus        22 ~~l~~aF~~fD~~dg~~G~Is~~EL~~~l~~~lg~~~~~~~ev~~li~~~D~d~dG~Idf~EF~~~~~~~   91 (106)
T 2h2k_A           22 ETVVTTFFTFARQEGRKDSLSVNEFKELVTQQLPHLLKDVGSLDEKMKSLDVNQDSELKFNEYWRLIGEL   91 (106)
T ss_dssp             HHHHHHHHHHHTSSSSTTEECHHHHHHHHHHHCTTTTTTCCCHHHHHHHHCTTCSSSEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccCCCCCEECHHHHHHHHHHHcCcCCCCHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHH
Confidence            57899999999 7986 79999999999976323222 23578999999999999999999999998753

>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A

Probab=98.79  E-value=1.3e-08  Score=78.91  Aligned_cols=60  Identities=15%  Similarity=0.244  Sum_probs=52.5

Q ss_pred             HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy2947         371 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA  433 (441)
Q Consensus       371 ~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l  433 (441)
                      ..++++|+.+|+ ++|+|+.+|++.+|...|  ++.+++..|++..|.|+||.|+++||+.+|
T Consensus        33 ~~y~~iF~~lD~-~dG~Isg~elr~~~~~sg--Lp~~~L~~Iw~laD~d~dG~Ld~~EF~~aM   92 (121)
T 3fia_A           33 AKHDQQFHSLKP-ISGFITGDQARNFFFQSG--LPQPVLAQIWALADMNNDGRMDQVEFSIAM   92 (121)
T ss_dssp             HHHHHHHHHTCC-BTTBEEHHHHHHHHGGGC--CCHHHHHHHHHHHCTTCSSEECHHHHHHHH
T ss_pred             HHHHHHHHHhCC-CCCeECHHHHHHHHHHcC--CCHHHHHHHHHHHcCCCCCcCCHHHHHHHH
Confidence            467788999998 899999999999998776  788899999999999999999999999877

>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6

Probab=98.79  E-value=5e-09  Score=81.08  Aligned_cols=65  Identities=11%  Similarity=0.023  Sum_probs=57.2

Q ss_pred             CHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         332 IPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       332 ~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      ..++++++|+.||.|++|+|+.+|++.++....   ...+++..+|+.+|.|++|.|+++||..+|..
T Consensus        20 ~~~~~~~~F~~~D~d~dG~Is~~el~~~l~~~g---l~~~el~~i~~~~D~d~dG~I~~~EF~~~m~~   84 (110)
T 1iq3_A           20 QREYYVNQFRSLQPDPSSFISGSVAKNFFTKSK---LSIPELSYIWELSDADCDGALTLPEFCAAFHL   84 (110)
T ss_dssp             SHHHHHHHHHHHCCSSSSEEEHHHHHHHCCSSS---CSSCCHHHHHHHHCSSSCSEEEHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHH
Confidence            457899999999999999999999999887652   34567899999999999999999999999865

>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response, metal binding PR; 1.73A {Homo sapiens} PDB: 1odb_A* 2wc8_A 2wcf_A 2wce_A 1e8a_A 1gqm_A

Probab=98.79  E-value=7.9e-09  Score=77.80  Aligned_cols=67  Identities=12%  Similarity=0.121  Sum_probs=57.0

Q ss_pred             HHHHHHHHHhhc-CCCCC-cccHHHHHHHHHhhc----cCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         333 PKEVVDAFKAAD-TTKSG-KLSFPDFLKVMHTHS----KAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       333 ~~~~~~~f~~~D-~d~~g-~i~~~ef~~~~~~~~----~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      .++++.+|+.|| .|++| +|+.+||+.++....    +.....+.++.+|+.+|.|++|.|+++||..++..
T Consensus        11 ~~~l~~~F~~fD~~dg~gg~I~~~El~~~l~~~~~~~lg~~~~~~~v~~~~~~~D~d~dG~I~f~EF~~~~~~   83 (95)
T 2wcb_A           11 LEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAI   83 (95)
T ss_dssp             HHHHHHHHHHHHTSSSSTTEEEHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTTSSSSTTSEEEHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCCCCccCHHHHHHHHHHHhhhhccccccHHHHHHHHHHHcCCCCCcCcHHHHHHHHHH
Confidence            356889999999 89998 999999999997521    23345678999999999999999999999999865

>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type four-helix bundle, metal binding protein; NMR {Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A 2l0p_A 2jpt_A

Probab=98.79  E-value=1.2e-08  Score=76.41  Aligned_cols=67  Identities=16%  Similarity=0.219  Sum_probs=58.8

Q ss_pred             HHHHHHHHHhhc-CCCCC-cccHHHHHHHHHh-----hccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         333 PKEVVDAFKAAD-TTKSG-KLSFPDFLKVMHT-----HSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       333 ~~~~~~~f~~~D-~d~~g-~i~~~ef~~~~~~-----~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      .+.++.+|+.|| .|++| .|+.+||..++..     . +.....++++.+|+.+|.+++|.|+++||..++...
T Consensus         8 ~~~l~~~F~~~D~~d~~G~~I~~~el~~~l~~~~~~~~-g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~~~   81 (93)
T 1k2h_A            8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSSFL-DVQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL   81 (93)
T ss_dssp             HHHHHHHHHHHHTTSSCCSSCCHHHHHHHHHHHTHHHH-HCCCCHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccCCCcCccCHHHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence            356889999999 79999 9999999999986     4 345567889999999999999999999999998764

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=98.78  E-value=2.9e-08  Score=102.86  Aligned_cols=125  Identities=7%  Similarity=0.148  Sum_probs=101.6

Q ss_pred             hHHHHHhhhc--ccc--CCCccCHHHHHHHHHHcCCCcCHHHHHHHHH----h-------CCCcccHHHHHHHHHhhcCC
Q psy2947         265 YLEFRECFFL--FAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLA----E-------KGGKLSFPDFLKVMHTHSKA  329 (441)
Q Consensus       265 ~~~l~~~f~~--~d~--~G~i~~~~el~~~~~~~~~~~~~~~~~~~~~----~-------~~g~i~~~ef~~~~~~~~~~  329 (441)
                      ...+++.|..  +|.  +|.| +.+++..+++.     ...++..+++    +       ++|.|+++||.+++..... 
T Consensus       149 ~~~L~kaf~~~~~D~n~dGkI-s~kel~~~l~~-----~~~~v~~l~~~~d~~~~~~d~~~~g~i~feEF~~f~~~l~~-  221 (885)
T 3ohm_B          149 NTFLRKAYTKLKLQVNQDGRI-PVKNILKMFSA-----DKKRVETALESCGLKFNRSESIRPDEFSLEIFERFLNKLCL-  221 (885)
T ss_dssp             HHHHHHHHHHHHHSCCTTSCE-EHHHHHHTTGG-----GHHHHHHHHHTTTCCCSTTCEECGGGCCHHHHHHHHHHHSC-
T ss_pred             HHHHHHHHHHhcCccCCCCcc-CHHHHHHHHhc-----CHHHHHHHHHHhCCCccccccCCCCcCCHHHHHHHHHhcCC-
Confidence            3567777765  565  4888 78888887764     3456666664    1       5678999999999997743 


Q ss_pred             CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCC---------CChHHHHHHHHHhCCC----CCCcccHHHHHHH
Q psy2947         330 EDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAE---------DIPKEVVDAFKAADTT----KSGTVPAKYLKHV  396 (441)
Q Consensus       330 ~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~---------~~~~~~~~~f~~~D~~----~~G~is~~ef~~~  396 (441)
                         ..+++++|+.||.+++|.|+.+||+.++...++..         ...+.+.++|+.+|.+    ++|.|++++|..+
T Consensus       222 ---R~EI~eiF~~ydsd~~g~mT~~EL~~FL~~~Q~e~~~~e~~~~~~t~e~~~~iI~k~e~~~~~~~~g~LsldgF~~y  298 (885)
T 3ohm_B          222 ---RPDIDKILLEIGAKGKPYLTLEQLMDFINQKQRDPRLNEVLYPPLRPSQARLLIEKYEPNQQFLERDQMSMEGFSRY  298 (885)
T ss_dssp             ---CHHHHHHHHHTTCCSTTCEEHHHHHHHHHHHSSCTTSCTTTSCCCCHHHHHHHHHHHCCCHHHHHTTEECHHHHHHH
T ss_pred             ---HHHHHHHHHHHhcCCCCccCHHHHHHHHHHhcCcccccccccccCCHHHHHHHHHHhcCChhhhccCccchhhhhhh
Confidence               47899999999999999999999999999886542         4568899999999999    7999999999999


Q ss_pred             HHH
Q psy2947         397 LVN  399 (441)
Q Consensus       397 l~~  399 (441)
                      |..
T Consensus       299 L~S  301 (885)
T 3ohm_B          299 LGG  301 (885)
T ss_dssp             HTS
T ss_pred             ccC
Confidence            975

>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A

Probab=98.78  E-value=2e-08  Score=74.05  Aligned_cols=65  Identities=11%  Similarity=0.156  Sum_probs=57.8

Q ss_pred             HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHH---HHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKE---VVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~---~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      ..+++.+|+.||.|++|.|+.+||..++..+. .....++   +..+|..+|.+++|.|++ ||..++..
T Consensus        13 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g-~~~~~~~~~~~~~~~~~~d~~~~g~i~~-eF~~~~~~   80 (86)
T 1j7q_A           13 KDECMKIFDIFDRNAENIAPVSDTMDMLTKLG-QTYTKRETEAIMKEARGPKGDKKNIGPE-EWLTLCSK   80 (86)
T ss_dssp             HHHHHHHHHHHSTTTTSCBCHHHHHHHHHHTS-CCCSHHHHHHHHHHHHCSSCSSCCBCTT-HHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHhCCCCCCcCCH-HHHHHHHH
Confidence            46788999999999999999999999998873 4455677   999999999999999999 99999875

>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB: 1mr8_A

Probab=98.75  E-value=8.9e-09  Score=77.26  Aligned_cols=66  Identities=14%  Similarity=0.122  Sum_probs=55.0

Q ss_pred             HHHHHHHHhhcC-CCCC-cccHHHHHHHH-HhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         334 KEVVDAFKAADT-TKSG-KLSFPDFLKVM-HTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       334 ~~~~~~f~~~D~-d~~g-~i~~~ef~~~~-~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      +.++.+|+.||. |++| .|+.+||..++ ..+ .......+++.+|+.+|.|++|.|+++||..++...
T Consensus        10 ~~l~~~F~~~D~~d~dG~~I~~~El~~~l~~~~-g~~~~~~~~~~l~~~~D~d~dG~I~~~EF~~~~~~~   78 (93)
T 1xk4_A           10 NSIIDVYHKYSLIKGNFHAVYRDDLKKLLETES-PQYIRKKGADVWFKELDINTDGAVNFQEFLILVIKM   78 (93)
T ss_dssp             HHHHHHHHHHHTSSSCTTCBCHHHHHHHHHHHS-CHHHHTTCHHHHHHHHCTTCSSSBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCCCcCeECHHHHHHHHHHHC-cccCCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence            568899999999 9999 99999999999 443 211223467899999999999999999999999764

>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein; 1.90A {Homo sapiens}

Probab=98.75  E-value=2.3e-08  Score=77.10  Aligned_cols=66  Identities=6%  Similarity=0.109  Sum_probs=58.9

Q ss_pred             HHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       334 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      ..++.+|+.||.|++|.|+.+||..++... +.....+++..+|+.+|.+++|.|+++||..++...
T Consensus        32 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~~-g~~~~~~~~~~l~~~~D~d~dg~i~~~eF~~~~~~~   97 (107)
T 2d58_A           32 EGFKEKYMEFDLNGNGDIDIMSLKRMLEKL-GVPKTHLELKKLIGEVSSGSGETFSYPDFLRMMLGK   97 (107)
T ss_dssp             HHHHHHHTTSCCCTTSCEEHHHHHHHHHHT-TCCCCHHHHHHHHHHHCSSSSSEECHHHHHHHHSSS
T ss_pred             HHHHHHHHHHCCCCCCcCcHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHc
Confidence            568899999999999999999999999877 344567899999999999999999999999998653

>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A

Probab=98.74  E-value=3.1e-08  Score=75.87  Aligned_cols=62  Identities=11%  Similarity=0.059  Sum_probs=55.6

Q ss_pred             HHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       334 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      ++++++|+.+|. ++|+|+.+|++.++....   ...+++..+|+.+|.|++|.|+++||..+|..
T Consensus        15 ~~~~~~F~~~D~-~dG~Is~~el~~~l~~~g---l~~~el~~i~~~~D~d~dG~id~~EF~~~m~~   76 (106)
T 1eh2_A           15 AKYDAIFDSLSP-VNGFLSGDKVKPVLLNSK---LPVDILGRVWELSDIDHDGMLDRDEFAVAMFL   76 (106)
T ss_dssp             HHHHHHHTTSCC-SSSCCBHHHHHHHHHTTT---CCHHHHHHHHHHHCSSCSSBCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCC-CCCeEcHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHH
Confidence            567889999999 999999999999998752   45788999999999999999999999999864

>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A

Probab=98.71  E-value=3.8e-08  Score=78.81  Aligned_cols=63  Identities=16%  Similarity=0.071  Sum_probs=56.8

Q ss_pred             HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      .++++++|+.|| |++|+|+.+|++.++....   ...+++..+|+.+|.|+||.|+++||..+|..
T Consensus        50 ~~~l~~~F~~fD-d~dG~Is~~El~~~l~~~g---l~~~el~~I~~~~D~d~dG~Ld~~EF~~am~l  112 (139)
T 2jq6_A           50 KPTYDEIFYTLS-PVNGKITGANAKKEMVKSK---LPNTVLGKIWKLADVDKDGLLDDEEFALANHL  112 (139)
T ss_dssp             HHHHHHHHHHSC-CSSSEEEHHHHHHHHHHTT---CCHHHHHHHHHHHCSSCCSEEEHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCCCeECHHHHHHHHHHhC---cCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence            567899999999 9999999999999998742   55788999999999999999999999999865

>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium free, signaling protein; HET: MSE; 1.15A {Homo sapiens} SCOP: a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A 1jwd_A 2cnp_A 2jtt_A

Probab=98.71  E-value=1.9e-08  Score=74.83  Aligned_cols=66  Identities=14%  Similarity=0.096  Sum_probs=57.5

Q ss_pred             HHHHHHHHhhc-CCCCC-cccHHHHHHHHHh---hccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         334 KEVVDAFKAAD-TTKSG-KLSFPDFLKVMHT---HSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       334 ~~~~~~f~~~D-~d~~g-~i~~~ef~~~~~~---~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      +.++.+|+.|| .|++| .|+.+||..++..   . ......++++.+|+.+|.+++|.|+++||..++..+
T Consensus        10 ~~l~~~F~~~D~~d~~G~~i~~~el~~~l~~~~~~-g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~~   80 (90)
T 1k8u_A           10 GLLVAIFHKYSGREGDKHTLSKKELKELIQKELTI-GSKLQDAEIARLMEDLDRNKDQEVNFQEYVTFLGAL   80 (90)
T ss_dssp             HHHHHHHHHHHTSSSCTTEEEHHHHHHHHHHHSCC-GGGTTSHHHHHHHHHHHHTTTCEEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCCCcCCHHHHHHHHHHhccc-CCCCCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence            56889999999 59999 9999999999986   4 334456789999999999999999999999998754

>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding protein; NMR {Homo sapiens} SCOP: a.39.1.7

Probab=98.71  E-value=3.6e-08  Score=75.44  Aligned_cols=67  Identities=12%  Similarity=0.061  Sum_probs=54.4

Q ss_pred             HHHHHHHHHhhcCCCCCcccHHHHHHHHHh----hccCCCCh-----------HHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy2947         333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHT----HSKAEDIP-----------KEVVDAFKAADTTKSGTVPAKYLKHVL  397 (441)
Q Consensus       333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~----~~~~~~~~-----------~~~~~~f~~~D~~~~G~is~~ef~~~l  397 (441)
                      ...++.+|+.||.|++|.|+.+||..++..    ........           ..+..+|+.+|.|++|.|+++||..++
T Consensus        19 ~~~~~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~g~~~~~~~~~~~~e~~~~~~~~~~~~~D~d~dG~Is~~EF~~~~   98 (103)
T 1snl_A           19 RFNPKTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVMKNVDTNQDRLVTLEEFLAST   98 (103)
T ss_dssp             CCCHHHHHHHHCSSCCSEEEHHHHHHHHHHHHHTTSCCSSCSSHHHHTTHHHHHHHHHHHHHTCSSCSSEEEHHHHHHHH
T ss_pred             cCCHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHHHHcCCCCCCcCCHHHHHHHH
Confidence            345889999999999999999999999885    22222111           248889999999999999999999988


Q ss_pred             HH
Q psy2947         398 VN  399 (441)
Q Consensus       398 ~~  399 (441)
                      ..
T Consensus        99 ~~  100 (103)
T 1snl_A           99 QR  100 (103)
T ss_dssp             HC
T ss_pred             hc
Confidence            53

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.70  E-value=9.4e-09  Score=96.54  Aligned_cols=82  Identities=9%  Similarity=-0.031  Sum_probs=58.7

Q ss_pred             CCCCCEEEccCCCCCccc-hhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhH-HH-HhhcccccCC-chh
Q psy2947         128 CKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRD-EV-LRKQKKLHQP-SRL  203 (441)
Q Consensus       128 l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~-~~-l~~~~~~~~p-~~l  203 (441)
                      +++|+.++|++|+++.|| .+|.++++|+.|++.+| +....         +..+..+..+. .+ +.. .+..++ ..+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~---------~~aF~~~~~L~~~l~l~~-~l~~I~~~aF  293 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIG---------QRVFSNCGRLAGTLELPA-SVTAIEFGAF  293 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEEC---------TTTTTTCTTCCEEEEECT-TCCEECTTTT
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceeh---------HHHhhCChhccEEEEEcc-cceEEchhhh
Confidence            678999999999999998 67889999999999988 43322         23455555554 44 333 444454 577


Q ss_pred             hhhhhhcccccccccCC
Q psy2947         204 QDLAVQSVIASKENFFE  220 (441)
Q Consensus       204 ~~l~~l~~l~l~~n~~~  220 (441)
                      ..+.+|+.++++.|.+.
T Consensus       294 ~~c~~L~~l~l~~n~i~  310 (329)
T 3sb4_A          294 MGCDNLRYVLATGDKIT  310 (329)
T ss_dssp             TTCTTEEEEEECSSCCC
T ss_pred             hCCccCCEEEeCCCccC
Confidence            88889999988777554

>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100 family, EF-hand protein, complex (ligand/annexin), ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2 PDB: 1nsh_A

Probab=98.68  E-value=4.4e-08  Score=74.28  Aligned_cols=67  Identities=16%  Similarity=0.259  Sum_probs=57.2

Q ss_pred             HHHHHHHHhhc-CCCCC-cccHHHHHHHHHh-hc---cCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         334 KEVVDAFKAAD-TTKSG-KLSFPDFLKVMHT-HS---KAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       334 ~~~~~~f~~~D-~d~~g-~i~~~ef~~~~~~-~~---~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      +.++.+|+.|| .|++| .|+.+||..++.. +.   ......+.++.+|+.+|.+++|.|+++||..++..+
T Consensus        13 ~~l~~~F~~~Dd~d~~G~~I~~~el~~~l~~~~~~~~~~~~~~~~~~~l~~~~D~~~dg~I~~~EF~~~~~~~   85 (99)
T 1qls_A           13 ESLIAIFQKHAGRDGNNTKISKTEFLIFMNTELAAFTQNQKDPGVLDRMMKKLDLDSDGQLDFQEFLNLIGGL   85 (99)
T ss_dssp             HHHHHHHHHHHTTSSCTTCBCHHHHHHHHTTTSHHHHHHCCCTHHHHHHHHHHCTTCSSSBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCcCeeCHHHHHHHHHHHcchhccccCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence            46889999998 99999 9999999999974 21   133456789999999999999999999999998764

>1psr_A Psoriasin, S100A7; EF-hand protein, MAD phasing, psoriasis, S100 protein family; 1.05A {Homo sapiens} SCOP: a.39.1.2 PDB: 2psr_A 2wor_A* 2wos_A* 3psr_A 2wnd_A

Probab=98.62  E-value=2.6e-08  Score=75.73  Aligned_cols=67  Identities=16%  Similarity=0.244  Sum_probs=54.8

Q ss_pred             HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhc----cC--CCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHS----KA--EDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~----~~--~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      .++++++|+.||.+ +|.|+.+|++.++....    +.  ....++++.+|+.+|.|++|.|+++||..++...
T Consensus         9 ~~~l~~~F~~fD~~-~g~Is~~El~~~l~~~~~~~lg~~~~~~~~ev~~l~~~~D~d~dG~I~f~EF~~~~~~~   81 (100)
T 1psr_A            9 IIGMIDMFHKYTRR-DDKIDKPSLLTMMKENFPNFLSACDKKGTNYLADVFEKKDKNEDKKIDFSEFLSLLGDI   81 (100)
T ss_dssp             HHHHHHHHHHTCCT-TSCBCHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHCTTCSSCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCC-CCeECHHHHHHHHHHHhHhhhccccccCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence            35688999999976 79999999999997621    11  2334578889999999999999999999999753

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.62  E-value=2.5e-08  Score=85.23  Aligned_cols=105  Identities=14%  Similarity=0.096  Sum_probs=83.5

Q ss_pred             CCcccEEeccCC-CcC--------cccCCCCCCCEEEccCCCCC-----cCCcCccCCCCCcEEEccCCcCCCC---CCc
Q psy2947          60 FSHAFLLSLSYT-PIG--------RRIFKCDTVEVLSLKSNSLT-----SLPPDIGRLTNLRVLCLTDNCLQNA---SIP  122 (441)
Q Consensus        60 l~~L~~l~l~~n-~i~--------~~~~~l~~L~~L~l~~n~l~-----~lp~~~~~l~~L~~L~l~~n~l~~~---~~p  122 (441)
                      .++|+.|+|++| .|.        ..+...++|++|+|++|.|.     .+...+...++|++|+|++|.|...   .+.
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~  114 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV  114 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence            578999999999 775        34556789999999999998     2455566778999999999999710   134


Q ss_pred             hhhhcCCCCCEEEc--cCCCCCc-----cchhhcCCCCCCEEEccCCcC
Q psy2947         123 FTLTFCKNLTHLYL--DNNLLDA-----LPGFLLSMPQLDTVYRHGNHN  164 (441)
Q Consensus       123 ~~~~~l~~L~~L~l--~~n~l~~-----lp~~~~~l~~L~~L~l~~N~~  164 (441)
                      ..+...++|++|+|  ++|.|+.     +...+...++|+.|+|++|.+
T Consensus       115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            55677789999999  8899974     446677778999999999985

>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II, calcium/phospholipid binding protein, calcium-phospholipid protein complex; 2.25A {Homo sapiens} SCOP: a.39.1.2 PDB: 1bt6_A

Probab=98.59  E-value=7.1e-08  Score=72.63  Aligned_cols=67  Identities=16%  Similarity=0.199  Sum_probs=54.9

Q ss_pred             HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhc----cCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHS----KAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~----~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      .++++.+|+.||. ++|+|+.+|+..++....    +.....++++.+|+.+|.|++|.|+++||..++...
T Consensus         8 ~~~l~~~F~~fD~-~dg~Is~~El~~~l~~~~~~~lg~~~~~~ev~~l~~~~D~d~dG~I~f~EF~~~~~~~   78 (96)
T 1a4p_A            8 METMMFTFHKFAG-DKGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVGFQSFFSLIAGL   78 (96)
T ss_dssp             HHHHHHHHHHHHG-GGCSBCHHHHHHHHHHHCHHHHHHSCCTTHHHHHHHHHCTTSSSCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcC-CCCeECHHHHHHHHHHHcccccccccCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence            3568899999993 567999999999997521    223446789999999999999999999999999763

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.52  E-value=9.5e-09  Score=104.51  Aligned_cols=26  Identities=8%  Similarity=-0.128  Sum_probs=17.3

Q ss_pred             cccccCCchhhhhhhhcccccccccC
Q psy2947         194 QKKLHQPSRLQDLAVQSVIASKENFF  219 (441)
Q Consensus       194 ~~~~~~p~~l~~l~~l~~l~l~~n~~  219 (441)
                      +....+|..+..+++|+.|+++.|.+
T Consensus       280 ~~~~~l~~~~~~~~~L~~L~Ls~~~l  305 (592)
T 3ogk_B          280 MGPNEMPILFPFAAQIRKLDLLYALL  305 (592)
T ss_dssp             CCTTTGGGGGGGGGGCCEEEETTCCC
T ss_pred             cchhHHHHHHhhcCCCcEEecCCCcC
Confidence            33445566667777888888877753

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=98.51  E-value=1.7e-07  Score=96.65  Aligned_cols=117  Identities=14%  Similarity=0.138  Sum_probs=92.9

Q ss_pred             cccCCCccCHHHHHHHHHHcCCCcCHHHHHHHHH-----------hCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhh
Q psy2947         275 FARNGTIKTLDELSVIMRSLGMSPTIAELKKYLA-----------EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAA  343 (441)
Q Consensus       275 ~d~~G~i~~~~el~~~~~~~~~~~~~~~~~~~~~-----------~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~  343 (441)
                      .|.+|.| +.+|+..+++..+.  ...++.++++           +++|.|+|+||.+++.....    ..+++++|+.|
T Consensus       166 ~n~dG~I-s~kEl~~~l~~~~~--~~~el~~~~~~~~~~~~k~D~~~~g~L~FeEF~~f~~~L~~----R~EI~eiF~~y  238 (816)
T 3qr0_A          166 EMEKNKI-PVKAIQKCLSKDKD--DRARISKALEKIGWPSGKNDAIDLKAFDFDTFFKFYLALLE----RSEIEGIFKEL  238 (816)
T ss_dssp             SCCSSEE-EHHHHHHHHCSCHH--HHHHHHHHHHHHTSCCSTTCEEETTTCCHHHHHHHHHHHCC----CTHHHHHHHHH
T ss_pred             CCCCCCC-CHHHHHHHHHhcCC--hHHHHHHHHHHhcccccccccCCCCcCCHHHHHHHHHhcCC----HHHHHHHHHHH
Confidence            3456899 79999988875431  1234555443           24689999999999998743    46899999999


Q ss_pred             cCCCCCcccHHHHHHHHHhhccCC---------CChHHHHHHHHHhCC--C----CCCcccHHHHHHHHHH
Q psy2947         344 DTTKSGKLSFPDFLKVMHTHSKAE---------DIPKEVVDAFKAADT--T----KSGTVPAKYLKHVLVN  399 (441)
Q Consensus       344 D~d~~g~i~~~ef~~~~~~~~~~~---------~~~~~~~~~f~~~D~--~----~~G~is~~ef~~~l~~  399 (441)
                      |.|++|.|+. ||..++...++..         ...+.++++++.+|.  +    ++|.|++++|..+|..
T Consensus       239 ~~dg~~~mT~-eL~~FL~~~Q~E~~~~~~~~~~~t~e~~~~iI~kye~~~~~~~~~~g~LsldgF~~yL~S  308 (816)
T 3qr0_A          239 SKNKGNITTV-MFRDFLNDMQRHPSLHKTLFPLYTDAQCEALINDYESAVNKKGKKKGQLTKEGLLYFLMC  308 (816)
T ss_dssp             TTTSSSEEHH-HHHHHHHHTSSCTTSCTTTSCCCCHHHHHHHHHHHHHHHHGGGCBTTEECHHHHHHHHHS
T ss_pred             ccCCCCcccH-HHHHHHHHhCCccccccccccccCHHHHHHHHHHhccccchhhhccCCccHHHHHHHhhc
Confidence            9999999999 9999999886543         356789999999887  5    7899999999999975

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.47  E-value=6.7e-08  Score=92.12  Aligned_cols=134  Identities=18%  Similarity=0.042  Sum_probs=92.3

Q ss_pred             CCcccEEeccCCCcCc----cc-CCCCCCCEEEccCCCCCcCC-----cCc-cCCCCCcEEEccCCcCCC---CCCchhh
Q psy2947          60 FSHAFLLSLSYTPIGR----RI-FKCDTVEVLSLKSNSLTSLP-----PDI-GRLTNLRVLCLTDNCLQN---ASIPFTL  125 (441)
Q Consensus        60 l~~L~~l~l~~n~i~~----~~-~~l~~L~~L~l~~n~l~~lp-----~~~-~~l~~L~~L~l~~n~l~~---~~~p~~~  125 (441)
                      ..+|+.|+|++|.|..    .+ ..+++|+.|+|++|.|+...     ..+ ...++|++|+|++|.|+.   ..++..+
T Consensus       100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L  179 (372)
T 3un9_A          100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL  179 (372)
T ss_dssp             SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred             CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence            3689999999997752    12 23568999999999997322     222 346889999999999861   0244455


Q ss_pred             hcCCCCCEEEccCCCCCc-----cchhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-Hhhccccc
Q psy2947         126 TFCKNLTHLYLDNNLLDA-----LPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLH  198 (441)
Q Consensus       126 ~~l~~L~~L~l~~n~l~~-----lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~  198 (441)
                      ..+++|++|+|++|.|+.     ++..+...++|+.|+|++|.+.....     ..+...+...+.+..+ +.+|.++.
T Consensus       180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~-----~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA-----LALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH-----HHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH-----HHHHHHHHhCCCCCEEeccCCCCCH
Confidence            778899999999999963     35667778899999999998643221     1233444445555555 67776643

>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A

Probab=98.42  E-value=7.9e-07  Score=68.87  Aligned_cols=62  Identities=10%  Similarity=0.046  Sum_probs=55.1

Q ss_pred             HHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       334 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      .+++++|+.+|. ++|+|+.+|.+.++...   ....+++..+|+..|.|++|.|+++||..+|.-
T Consensus        33 ~~y~~iF~~lD~-~dG~Isg~elr~~~~~s---gLp~~~L~~Iw~laD~d~dG~Ld~~EF~~aM~L   94 (121)
T 3fia_A           33 AKHDQQFHSLKP-ISGFITGDQARNFFFQS---GLPQPVLAQIWALADMNNDGRMDQVEFSIAMKL   94 (121)
T ss_dssp             HHHHHHHHHTCC-BTTBEEHHHHHHHHGGG---CCCHHHHHHHHHHHCTTCSSEECHHHHHHHHHH
T ss_pred             HHHHHHHHHhCC-CCCeECHHHHHHHHHHc---CCCHHHHHHHHHHHcCCCCCcCCHHHHHHHHHH
Confidence            567889999998 89999999999999865   345788999999999999999999999999863

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.35  E-value=9.7e-08  Score=97.03  Aligned_cols=100  Identities=16%  Similarity=0.206  Sum_probs=67.4

Q ss_pred             cccEEeccCCC-c-----CcccCCCCCCCEEEccCCCCCc-----CCcCccCCCCCcEEEccCCcCCC---CCCchhhhc
Q psy2947          62 HAFLLSLSYTP-I-----GRRIFKCDTVEVLSLKSNSLTS-----LPPDIGRLTNLRVLCLTDNCLQN---ASIPFTLTF  127 (441)
Q Consensus        62 ~L~~l~l~~n~-i-----~~~~~~l~~L~~L~l~~n~l~~-----lp~~~~~l~~L~~L~l~~n~l~~---~~~p~~~~~  127 (441)
                      +|+.|++++|. +     +.....+++|++|+|++|.++.     ++..+..+++|+.|++++|.++.   +.++..+.+
T Consensus       139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~  218 (592)
T 3ogk_B          139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN  218 (592)
T ss_dssp             GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHH
T ss_pred             cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhh
Confidence            38888888773 2     2223367788888888887652     22234567788888888887750   123333467


Q ss_pred             CCCCCEEEccCCCCCccchhhcCCCCCCEEEccC
Q psy2947         128 CKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHG  161 (441)
Q Consensus       128 l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~  161 (441)
                      +++|++|++++|.+..+|..+..+++|+.|++++
T Consensus       219 ~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~  252 (592)
T 3ogk_B          219 CRSLVSVKVGDFEILELVGFFKAAANLEEFCGGS  252 (592)
T ss_dssp             CTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECB
T ss_pred             CCCCcEEeccCccHHHHHHHHhhhhHHHhhcccc
Confidence            7888888888888777777777777788877764

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.34  E-value=1.5e-07  Score=80.28  Aligned_cols=90  Identities=13%  Similarity=0.124  Sum_probs=71.9

Q ss_pred             cccCCCCCCCEEEccCC-CCC-----cCCcCccCCCCCcEEEccCCcCCC---CCCchhhhcCCCCCEEEccCCCCCc--
Q psy2947          75 RRIFKCDTVEVLSLKSN-SLT-----SLPPDIGRLTNLRVLCLTDNCLQN---ASIPFTLTFCKNLTHLYLDNNLLDA--  143 (441)
Q Consensus        75 ~~~~~l~~L~~L~l~~n-~l~-----~lp~~~~~l~~L~~L~l~~n~l~~---~~~p~~~~~l~~L~~L~l~~n~l~~--  143 (441)
                      ..+...++|+.|+|++| .|.     .+...+...++|++|+|++|.|..   ..+...+...++|++|+|++|.|+.  
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence            44567889999999999 987     355567778999999999999861   0133445667899999999999974  


Q ss_pred             ---cchhhcCCCCCCEEEc--cCCcC
Q psy2947         144 ---LPGFLLSMPQLDTVYR--HGNHN  164 (441)
Q Consensus       144 ---lp~~~~~l~~L~~L~l--~~N~~  164 (441)
                         +...+...++|+.|+|  ++|.+
T Consensus       110 ~~~l~~~L~~n~~L~~L~L~~~~N~i  135 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRIDNQSQPL  135 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCC
T ss_pred             HHHHHHHHHhCCCceEEEecCCCCCC
Confidence               4567788899999999  88885

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.30  E-value=1.4e-06  Score=81.53  Aligned_cols=83  Identities=20%  Similarity=0.279  Sum_probs=56.7

Q ss_pred             CCCCCEEEccCCCCCcCCcC-ccCCCCCcEEEccCCcCCCCCCch-hhhcCCCCC-EEEccCCCCCccc-hhhcCCCCCC
Q psy2947          80 CDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPF-TLTFCKNLT-HLYLDNNLLDALP-GFLLSMPQLD  155 (441)
Q Consensus        80 l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~p~-~~~~l~~L~-~L~l~~n~l~~lp-~~~~~l~~L~  155 (441)
                      +++|+.|+|++|+++.||.. |.++++|+.|++++| ++  .++. .|.++.+|+ .+++.+ .++.|+ .+|.++++|+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~--~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~  300 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK--TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLR  300 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC--EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc--eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCC
Confidence            56777777777777777665 777777777777776 55  4554 456777777 777766 666665 6677777777


Q ss_pred             EEEccCCcCcc
Q psy2947         156 TVYRHGNHNYF  166 (441)
Q Consensus       156 ~L~l~~N~~~~  166 (441)
                      .|++++|.+..
T Consensus       301 ~l~l~~n~i~~  311 (329)
T 3sb4_A          301 YVLATGDKITT  311 (329)
T ss_dssp             EEEECSSCCCE
T ss_pred             EEEeCCCccCc
Confidence            77777766544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.24  E-value=1e-06  Score=79.19  Aligned_cols=82  Identities=18%  Similarity=0.230  Sum_probs=54.1

Q ss_pred             CCCCE--EEccCCCCCcCCcC----ccCCCCCcEEEccCCcCCCC--CCchhhhcCCCCCEEEccCCCCCccc--hhhcC
Q psy2947          81 DTVEV--LSLKSNSLTSLPPD----IGRLTNLRVLCLTDNCLQNA--SIPFTLTFCKNLTHLYLDNNLLDALP--GFLLS  150 (441)
Q Consensus        81 ~~L~~--L~l~~n~l~~lp~~----~~~l~~L~~L~l~~n~l~~~--~~p~~~~~l~~L~~L~l~~n~l~~lp--~~~~~  150 (441)
                      +.|..  ++++.|+...++..    ...+++|+.|+|++|+|+ +  .+|..+..+++|+.|+|++|+|+.+.  ..+..
T Consensus       141 p~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~-~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~  219 (267)
T 3rw6_A          141 PDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLY-RLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKG  219 (267)
T ss_dssp             HHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCC-CCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTT
T ss_pred             cchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCC-CCccchhHHhhCCCCCEEECCCCccCCchhhhhccc
Confidence            34444  56677755533322    245778888888888887 3  33455677888888888888887663  23333


Q ss_pred             CCCCCEEEccCCcC
Q psy2947         151 MPQLDTVYRHGNHN  164 (441)
Q Consensus       151 l~~L~~L~l~~N~~  164 (441)
                      + +|+.|+|++|++
T Consensus       220 l-~L~~L~L~~Npl  232 (267)
T 3rw6_A          220 L-KLEELWLDGNSL  232 (267)
T ss_dssp             S-CCSEEECTTSTT
T ss_pred             C-CcceEEccCCcC
Confidence            3 788888888885

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.21  E-value=7.9e-08  Score=97.69  Aligned_cols=102  Identities=18%  Similarity=0.173  Sum_probs=55.0

Q ss_pred             CCcccEEeccCCCcCc----ccC-CCCCCCEEEccCC-CCCc--CCcCccCCCCCcEEEccCCcCCCCCCchhh----hc
Q psy2947          60 FSHAFLLSLSYTPIGR----RIF-KCDTVEVLSLKSN-SLTS--LPPDIGRLTNLRVLCLTDNCLQNASIPFTL----TF  127 (441)
Q Consensus        60 l~~L~~l~l~~n~i~~----~~~-~l~~L~~L~l~~n-~l~~--lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~----~~  127 (441)
                      +++|+.|+|++|.+..    .+. .+++|+.|+|++| .++.  ++.-+..+++|++|++++|.++ +..+..+    ..
T Consensus       104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~-~~~~~~l~~~~~~  182 (594)
T 2p1m_B          104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVD-DVSGHWLSHFPDT  182 (594)
T ss_dssp             CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEE-CCCGGGGGGSCTT
T ss_pred             CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccC-CcchHHHHHHhhc
Confidence            5566777777665432    222 4566777777666 4442  3333445666777777766655 2222222    24


Q ss_pred             CCCCCEEEccCCC--CC--ccchhhcCCCCCCEEEccCC
Q psy2947         128 CKNLTHLYLDNNL--LD--ALPGFLLSMPQLDTVYRHGN  162 (441)
Q Consensus       128 l~~L~~L~l~~n~--l~--~lp~~~~~l~~L~~L~l~~N  162 (441)
                      +++|+.|++++|.  ++  .++..+..+++|+.|++++|
T Consensus       183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            4566667666665  21  12222334566666666665

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=98.21  E-value=2.1e-06  Score=68.39  Aligned_cols=35  Identities=37%  Similarity=0.496  Sum_probs=17.1

Q ss_pred             CCCEEEccCCCCCcCCcC-ccCCCCCcEEEccCCcC
Q psy2947          82 TVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCL  116 (441)
Q Consensus        82 ~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l  116 (441)
                      +|+.|+|++|+|+.||.. |..+++|+.|+|++|.+
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            355555555555555444 44444444444444433

>1sra_A Sparc; extracellular matrix protein, calcium-binding protein; 2.00A {Homo sapiens} SCOP: a.39.1.3

Probab=98.20  E-value=3.6e-07  Score=73.19  Aligned_cols=62  Identities=10%  Similarity=0.073  Sum_probs=39.4

Q ss_pred             HHHHHHHHhCCC-CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         372 EVVDAFKAADTT-KSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       372 ~~~~~f~~~D~~-~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      .+.-+|..+|.| +||.|+..|+..+++.+.  ..+..++.+|+.+|.|+||.||++||.+++..
T Consensus        78 ~l~W~F~~lD~n~~DG~Isr~EL~~i~~~l~--~~e~cv~~ff~~cD~d~Dg~ISl~Ew~~Clg~  140 (151)
T 1sra_A           78 PVHWQFGQLDQHPIDGYLSHTELAPLRAPLI--PMEHCTTRFFETCDLDNDKYIALDEWAGCFGI  140 (151)
T ss_dssp             HHHHHHHHHCCTTCSSEECTTTTGGGGSTTS--TTGGGHHHHHHHHCTTCSSSEEHHHHHHHTTC
T ss_pred             HHHhHHHHHCCCCCCCcCcHHHHHHHHHHhc--ChHHHHHHHHHHhCCCCCCcCCHHHHHHHhCC
Confidence            455566666765 677777776666664432  34555666777777777777777777766643

>1sra_A Sparc; extracellular matrix protein, calcium-binding protein; 2.00A {Homo sapiens} SCOP: a.39.1.3

Probab=98.15  E-value=7.2e-07  Score=71.46  Aligned_cols=63  Identities=13%  Similarity=0.054  Sum_probs=54.1

Q ss_pred             HHHHHHHHHhhcCC-CCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy2947         333 PKEVVDAFKAADTT-KSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLV  398 (441)
Q Consensus       333 ~~~~~~~f~~~D~d-~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~  398 (441)
                      ...++..|..+|.| +||.|+..|+..++....   ..+.-++..|+.+|.|+||.||.+||...+.
T Consensus        76 ~~~l~W~F~~lD~n~~DG~Isr~EL~~i~~~l~---~~e~cv~~ff~~cD~d~Dg~ISl~Ew~~Clg  139 (151)
T 1sra_A           76 IFPVHWQFGQLDQHPIDGYLSHTELAPLRAPLI---PMEHCTTRFFETCDLDNDKYIALDEWAGCFG  139 (151)
T ss_dssp             HHHHHHHHHHHCCTTCSSEECTTTTGGGGSTTS---TTGGGHHHHHHHHCTTCSSSEEHHHHHHHTT
T ss_pred             hhHHHhHHHHHCCCCCCCcCcHHHHHHHHHHhc---ChHHHHHHHHHHhCCCCCCcCCHHHHHHHhC
Confidence            35689999999997 999999999998886542   3356788999999999999999999998873

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.08  E-value=1.2e-06  Score=82.95  Aligned_cols=152  Identities=14%  Similarity=0.061  Sum_probs=88.6

Q ss_pred             CCcccEEeccCCC-------------cCcccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhh
Q psy2947          60 FSHAFLLSLSYTP-------------IGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLT  126 (441)
Q Consensus        60 l~~L~~l~l~~n~-------------i~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~  126 (441)
                      +++|+.|.+..+.             ++..+..+++|+.|+|++|.-..++. + .+++|++|++..+.+. ...-..+.
T Consensus       138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~-~~~l~~l~  214 (362)
T 2ra8_A          138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLP-DSVVEDIL  214 (362)
T ss_dssp             HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCC-HHHHHHHH
T ss_pred             cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCC-hHHHHHHH
Confidence            5677777775441             22334567899999998874224444 4 3789999999888775 22222333


Q ss_pred             --cCCCCCEEEccC--CC------CCccchhh--cCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-Hhh
Q psy2947         127 --FCKNLTHLYLDN--NL------LDALPGFL--LSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRK  193 (441)
Q Consensus       127 --~l~~L~~L~l~~--n~------l~~lp~~~--~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~  193 (441)
                        .+++|++|+|+.  |.      +..+...+  ..+++|+.|+|.+|.+.......     +-. ...++.+..+ ++.
T Consensus       215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~-----la~-a~~~~~L~~LdLs~  288 (362)
T 2ra8_A          215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM-----FLE-SDILPQLETMDISA  288 (362)
T ss_dssp             HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH-----HHH-CSSGGGCSEEECCS
T ss_pred             HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH-----HHh-CccCCCCCEEECCC
Confidence              688999998853  22      11222222  24789999999888853211000     000 0112333333 455


Q ss_pred             ccccc-----CCchhhhhhhhcccccccccCC
Q psy2947         194 QKKLH-----QPSRLQDLAVQSVIASKENFFE  220 (441)
Q Consensus       194 ~~~~~-----~p~~l~~l~~l~~l~l~~n~~~  220 (441)
                      |.++.     ++..+..+++|+.|+++.|++.
T Consensus       289 n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          289 GVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             SCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            55433     3445567888999999888644

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.05  E-value=3e-06  Score=76.20  Aligned_cols=95  Identities=23%  Similarity=0.249  Sum_probs=70.9

Q ss_pred             CcccE--EeccCC---CcCcc----cCCCCCCCEEEccCCCCCcCC---cCccCCCCCcEEEccCCcCCCCCCchhhhcC
Q psy2947          61 SHAFL--LSLSYT---PIGRR----IFKCDTVEVLSLKSNSLTSLP---PDIGRLTNLRVLCLTDNCLQNASIPFTLTFC  128 (441)
Q Consensus        61 ~~L~~--l~l~~n---~i~~~----~~~l~~L~~L~l~~n~l~~lp---~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l  128 (441)
                      +.|..  ++++.|   .++..    ..++++|+.|+|++|+|+.++   ..+..+++|+.|+|++|+|+  .+ ..+..+
T Consensus       141 p~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~--~~-~~l~~l  217 (267)
T 3rw6_A          141 PDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK--SE-RELDKI  217 (267)
T ss_dssp             HHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC--SG-GGGGGG
T ss_pred             cchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC--Cc-hhhhhc
Confidence            34444  667777   23321    135789999999999999654   45778999999999999998  44 345555


Q ss_pred             C--CCCEEEccCCCCC-ccc-------hhhcCCCCCCEEE
Q psy2947         129 K--NLTHLYLDNNLLD-ALP-------GFLLSMPQLDTVY  158 (441)
Q Consensus       129 ~--~L~~L~l~~n~l~-~lp-------~~~~~l~~L~~L~  158 (441)
                      .  +|++|+|++|.+. .+|       ..+..+++|+.|+
T Consensus       218 ~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          218 KGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             TTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             ccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            5  9999999999995 455       2467789998875

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.00  E-value=5e-07  Score=91.78  Aligned_cols=105  Identities=23%  Similarity=0.286  Sum_probs=77.4

Q ss_pred             CCCcccEEeccCC-C-----cCcccCCCCCCCEEEccCCCCCc-----CCcCccCCCCCcEEEccCCc--CCCCCCchhh
Q psy2947          59 YFSHAFLLSLSYT-P-----IGRRIFKCDTVEVLSLKSNSLTS-----LPPDIGRLTNLRVLCLTDNC--LQNASIPFTL  125 (441)
Q Consensus        59 ~l~~L~~l~l~~n-~-----i~~~~~~l~~L~~L~l~~n~l~~-----lp~~~~~l~~L~~L~l~~n~--l~~~~~p~~~  125 (441)
                      .+++|+.|++++| .     ++..+..+++|++|+|++|.++.     ++.-...+++|+.|++++|.  +....++.-+
T Consensus       128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~  207 (594)
T 2p1m_B          128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLV  207 (594)
T ss_dssp             HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHH
T ss_pred             hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHH
Confidence            4689999999998 3     33344478999999999998763     33334467899999999987  2200122223


Q ss_pred             hcCCCCCEEEccCC-CCCccchhhcCCCCCCEEEccCCc
Q psy2947         126 TFCKNLTHLYLDNN-LLDALPGFLLSMPQLDTVYRHGNH  163 (441)
Q Consensus       126 ~~l~~L~~L~l~~n-~l~~lp~~~~~l~~L~~L~l~~N~  163 (441)
                      ..+++|++|++++| .++.+|..+..+++|+.|+++.+.
T Consensus       208 ~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~  246 (594)
T 2p1m_B          208 TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYT  246 (594)
T ss_dssp             HHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCC
T ss_pred             HhCCCCcEEecCCCCcHHHHHHHHhcCCcceEccccccc
Confidence            56799999999998 556688888889999999977664

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.94  E-value=1.7e-05  Score=76.12  Aligned_cols=101  Identities=18%  Similarity=0.213  Sum_probs=51.4

Q ss_pred             CCCCcccEEeccCC---CcCcccCCCCCCCEEEccCCCCCcCCcC-ccCCCCCcEEEccCCcCCCCCCch-hhhcCCCCC
Q psy2947          58 QYFSHAFLLSLSYT---PIGRRIFKCDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPF-TLTFCKNLT  132 (441)
Q Consensus        58 ~~l~~L~~l~l~~n---~i~~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~p~-~~~~l~~L~  132 (441)
                      .++.+|+.++++.|   .|+...+.+.+|+.+.|.. .++.|+.. |.++++|+.+++..| ++  .++. .|.+ .+|+
T Consensus       177 ~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~--~I~~~aF~~-~~L~  251 (401)
T 4fdw_A          177 YYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VS--TIGQEAFRE-SGIT  251 (401)
T ss_dssp             TTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CC--EECTTTTTT-CCCS
T ss_pred             hCcccCCeeecCCCcceEechhhEeecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-cc--Ccccccccc-CCcc
Confidence            34445555555544   2333333344555555542 24444443 555555555555543 22  3333 2233 4555


Q ss_pred             EEEccCCCCCccc-hhhcCCCCCCEEEccCCcC
Q psy2947         133 HLYLDNNLLDALP-GFLLSMPQLDTVYRHGNHN  164 (441)
Q Consensus       133 ~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~N~~  164 (441)
                      .+.+ .+.+..|+ .+|.++++|+.+.+.+|.+
T Consensus       252 ~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~  283 (401)
T 4fdw_A          252 TVKL-PNGVTNIASRAFYYCPELAEVTTYGSTF  283 (401)
T ss_dssp             EEEE-ETTCCEECTTTTTTCTTCCEEEEESSCC
T ss_pred             EEEe-CCCccEEChhHhhCCCCCCEEEeCCccc
Confidence            5555 34455664 5666777777777776654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.92  E-value=1.1e-05  Score=64.20  Aligned_cols=65  Identities=31%  Similarity=0.395  Sum_probs=47.3

Q ss_pred             CEEEccCCCCC--cCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEccCCCCCccc-hhhcCCCCCCEEEcc
Q psy2947          84 EVLSLKSNSLT--SLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRH  160 (441)
Q Consensus        84 ~~L~l~~n~l~--~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~  160 (441)
                      ..++.+++.++  .+|..+                     |      .+|++|+|++|+|+.|| ..|..+++|+.|+|+
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l---------------------p------~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   63 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF---------------------P------VDTTELVLTGNNLTALPPGLLDALPALRTAHLG   63 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC---------------------C------TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECC
T ss_pred             CEEEeCCCCCccccCCCCC---------------------C------cCCCEEECCCCcCCccChhhhhhccccCEEEec
Confidence            47788888887  777432                     2      23566677777777666 456778889999999


Q ss_pred             CCcCccCcccccccc
Q psy2947         161 GNHNYFKSTFMWYHS  175 (441)
Q Consensus       161 ~N~~~~~~~~~~~~~  175 (441)
                      +|++.|.|.+.|+..
T Consensus        64 ~NP~~CdC~l~~l~~   78 (130)
T 3rfe_A           64 ANPWRCDCRLVPLRA   78 (130)
T ss_dssp             SSCCBCSGGGHHHHH
T ss_pred             CCCeeccCccHHHHH
Confidence            999999998776543

>1tuz_A Diacylglycerol kinase alpha; transferase, HR532, nesgc, structural genomics, PSI, protein structure initiative; NMR {Homo sapiens} SCOP: a.39.1.7

Probab=97.88  E-value=0.00011  Score=56.39  Aligned_cols=57  Identities=9%  Similarity=0.154  Sum_probs=43.3

Q ss_pred             CCCcccHHHHHHHHHhhcCCC-CCHHHHHHHHHhhcCCC--------CCcccHHHHHHHHHhhccC
Q psy2947         310 KGGKLSFPDFLKVMHTHSKAE-DIPKEVVDAFKAADTTK--------SGKLSFPDFLKVMHTHSKA  366 (441)
Q Consensus       310 ~~g~i~~~ef~~~~~~~~~~~-~~~~~~~~~f~~~D~d~--------~g~i~~~ef~~~~~~~~~~  366 (441)
                      ++|.|+.++|..++..+.... .+..-+..+|+.||.|+        +|.|++.||..++..+..+
T Consensus        44 p~G~i~~e~F~~i~~~ffp~~~~p~~~~~~lF~~Fd~~~~~~~~~~~~g~I~fkefi~~LSll~rG  109 (118)
T 1tuz_A           44 QGDAIGYEGFQQFLKIYLEVDNVPRHLSLALFQSFETGHCLNETNVTKDVVCLNDVSCYFSLLEGG  109 (118)
T ss_dssp             ETTEECHHHHHHHHHHHTTCSSCCHHHHHHHHHHSCCCCCTTCCCCCSCCEEHHHHHHHHHHHHSC
T ss_pred             CCCCCCHHHHHHHHHHhCcCCCCHHHHHHHHHHHHhcccccccccCCCCeEeHHHHHHHHHHhcCC
Confidence            578888888888888887765 66677777888888874        7888888888877765443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.84  E-value=7.2e-06  Score=77.52  Aligned_cols=103  Identities=21%  Similarity=0.134  Sum_probs=65.1

Q ss_pred             CCCcccEEeccCC---CcCcccCCCCCCCEEEccCCCCC-cCCcCcc--CCCCCcEEEccC--CcCCCCC-----Cchhh
Q psy2947          59 YFSHAFLLSLSYT---PIGRRIFKCDTVEVLSLKSNSLT-SLPPDIG--RLTNLRVLCLTD--NCLQNAS-----IPFTL  125 (441)
Q Consensus        59 ~l~~L~~l~l~~n---~i~~~~~~l~~L~~L~l~~n~l~-~lp~~~~--~l~~L~~L~l~~--n~l~~~~-----~p~~~  125 (441)
                      .+++|+.|++++|   .++. + .+++|+.|+|..+.++ .....+.  .+++|+.|+|+.  |... +.     +...+
T Consensus       170 ~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~-~~~~~~~l~~~l  246 (362)
T 2ra8_A          170 AMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYG-FDGDMNVFRPLF  246 (362)
T ss_dssp             TCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGT-CCSCGGGTGGGS
T ss_pred             cCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccc-cchhHHHHHHHH
Confidence            3578888888877   2333 2 3778999999888776 1112232  678888888853  2211 11     11122


Q ss_pred             --hcCCCCCEEEccCCCCCc-cchhh---cCCCCCCEEEccCCcC
Q psy2947         126 --TFCKNLTHLYLDNNLLDA-LPGFL---LSMPQLDTVYRHGNHN  164 (441)
Q Consensus       126 --~~l~~L~~L~l~~n~l~~-lp~~~---~~l~~L~~L~l~~N~~  164 (441)
                        ..+++|++|+|++|.++. .+..+   ..+++|+.|+|+.|.+
T Consensus       247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L  291 (362)
T 2ra8_A          247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL  291 (362)
T ss_dssp             CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred             hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence              246889999998888853 22222   2467899999988875

>1tuz_A Diacylglycerol kinase alpha; transferase, HR532, nesgc, structural genomics, PSI, protein structure initiative; NMR {Homo sapiens} SCOP: a.39.1.7

Probab=97.80  E-value=0.00019  Score=55.21  Aligned_cols=83  Identities=17%  Similarity=0.165  Sum_probs=51.8

Q ss_pred             CcccHHHHHHHHHhhccCCCChHHHHHHHHHh-C-----CCCCCcccHHHHHHHHHHhCC-C-CCHHHHHHHHHHhCCCC
Q psy2947         349 GKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAA-D-----TTKSGTVPAKYLKHVLVNWGE-G-LSSKEVDQIFREANVTM  420 (441)
Q Consensus       349 g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~-D-----~~~~G~is~~ef~~~l~~~~~-~-l~~~~~~~l~~~~d~d~  420 (441)
                      +.++.++|.++...-.-.   ..+++.+++.| |     ...+|.|+.++|+.+++..-+ . .+..-+..+|..+|.++
T Consensus         6 s~lspe~l~~L~~~t~fs---~~elk~~y~~F~~g~~~k~cp~G~i~~e~F~~i~~~ffp~~~~p~~~~~~lF~~Fd~~~   82 (118)
T 1tuz_A            6 GLISPSDFAQLQKYMEYS---TKKVSDVLKLFEDGEMAKYVQGDAIGYEGFQQFLKIYLEVDNVPRHLSLALFQSFETGH   82 (118)
T ss_dssp             SCSCHHHHHHHHHHHHHC---CCCHHHHHHHHHTSGGGGGEETTEECHHHHHHHHHHHTTCSSCCHHHHHHHHHHSCCCC
T ss_pred             CcCCHHHHHHHHHHcccC---HHHHHHHHHHHccccccccCCCCCCCHHHHHHHHHHhCcCCCCHHHHHHHHHHHHhccc
Confidence            345666665544332111   12344444444 2     345788888888888887533 2 45666777888888764


Q ss_pred             --------CCceeHHHHHHHHh
Q psy2947         421 --------NSKVRYEDFVKIAC  434 (441)
Q Consensus       421 --------dg~i~~~ef~~~l~  434 (441)
                              +|.|++.||+.++.
T Consensus        83 ~~~~~~~~~g~I~fkefi~~LS  104 (118)
T 1tuz_A           83 CLNETNVTKDVVCLNDVSCYFS  104 (118)
T ss_dssp             CTTCCCCCSCCEEHHHHHHHHH
T ss_pred             ccccccCCCCeEeHHHHHHHHH
Confidence                    78999999988773

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.72  E-value=7.8e-05  Score=71.57  Aligned_cols=97  Identities=22%  Similarity=0.221  Sum_probs=54.2

Q ss_pred             cccEEeccCC--CcCcccCCCCCCCEEEccCCCCCcCCcC-ccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEccC
Q psy2947          62 HAFLLSLSYT--PIGRRIFKCDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDN  138 (441)
Q Consensus        62 ~L~~l~l~~n--~i~~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~  138 (441)
                      +|+.+.+..+  .|+...+.-.+|+.+.+.. .++.++.. |.++.+|+.+++++|.++  .+|...-...+|+.+.+. 
T Consensus       136 ~L~~i~l~~~i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~--~I~~~aF~~~~L~~l~lp-  211 (401)
T 4fdw_A          136 QIAKVVLNEGLKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT--KLPASTFVYAGIEEVLLP-  211 (401)
T ss_dssp             CCSEEECCTTCCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS--EECTTTTTTCCCSEEECC-
T ss_pred             CccEEEeCCCccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce--EechhhEeecccCEEEeC-
Confidence            4555555544  3333222223566666654 55555544 666666666666666665  555543334666666665 


Q ss_pred             CCCCccc-hhhcCCCCCCEEEccCC
Q psy2947         139 NLLDALP-GFLLSMPQLDTVYRHGN  162 (441)
Q Consensus       139 n~l~~lp-~~~~~l~~L~~L~l~~N  162 (441)
                      +.+..|+ .+|.++++|+.+.+..|
T Consensus       212 ~~l~~I~~~aF~~~~~L~~l~l~~~  236 (401)
T 4fdw_A          212 VTLKEIGSQAFLKTSQLKTIEIPEN  236 (401)
T ss_dssp             TTCCEECTTTTTTCTTCCCEECCTT
T ss_pred             CchheehhhHhhCCCCCCEEecCCC
Confidence            3365565 55666666666666554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.67  E-value=4.1e-05  Score=63.83  Aligned_cols=94  Identities=9%  Similarity=0.063  Sum_probs=64.4

Q ss_pred             CCCcCcccCCCCCCCEEEccCCCCCcC-CcCccCCCCCcEEEccCCc-CCCCCCchhhhcC----CCCCEEEccCCC-CC
Q psy2947          70 YTPIGRRIFKCDTVEVLSLKSNSLTSL-PPDIGRLTNLRVLCLTDNC-LQNASIPFTLTFC----KNLTHLYLDNNL-LD  142 (441)
Q Consensus        70 ~n~i~~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~-l~~~~~p~~~~~l----~~L~~L~l~~n~-l~  142 (441)
                      +|.+|.....-..|+.|+++++.|+.. -..+..+++|++|+|+++. +++ .-=..+..+    ++|++|+|++|. |+
T Consensus        50 ~~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD-~gL~~L~~~~~~~~~L~~L~Ls~C~~IT  128 (176)
T 3e4g_A           50 YNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIED-GCLERLSQLENLQKSMLEMEIISCGNVT  128 (176)
T ss_dssp             GGGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCH-HHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred             cccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCH-HHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence            445665433334789999999888722 1347789999999999985 551 101124443    369999999984 76


Q ss_pred             ccc-hhhcCCCCCCEEEccCCcC
Q psy2947         143 ALP-GFLLSMPQLDTVYRHGNHN  164 (441)
Q Consensus       143 ~lp-~~~~~l~~L~~L~l~~N~~  164 (441)
                      .-- ..+.++++|+.|++++++-
T Consensus       129 D~Gl~~L~~~~~L~~L~L~~c~~  151 (176)
T 3e4g_A          129 DKGIIALHHFRNLKYLFLSDLPG  151 (176)
T ss_dssp             HHHHHHGGGCTTCCEEEEESCTT
T ss_pred             HHHHHHHhcCCCCCEEECCCCCC
Confidence            432 4567789999999999874

>1nub_A Basement membrane protein BM-40; extracellular module, glycoprotein, anti-adhesive protein, C binding, site-directed mutagenesis; HET: NAG; 2.80A {Homo sapiens} SCOP: a.39.1.3 g.3.11.3 g.68.1.1 PDB: 2v53_A* 1bmo_A*

Probab=97.62  E-value=1.6e-05  Score=69.37  Aligned_cols=61  Identities=10%  Similarity=0.080  Sum_probs=36.4

Q ss_pred             HHHHHHHHhCC-CCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         372 EVVDAFKAADT-TKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       372 ~~~~~f~~~D~-~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      .+..+|..+|. |+||.|+..|+..+++.+.  ..+..+..+|+..|.|+||.||++||..++.
T Consensus       156 ~v~w~F~~lD~~n~dg~l~~~El~~i~~~l~--~~~~c~~~~~~~cD~n~D~~is~~Ew~~cf~  217 (229)
T 1nub_A          156 PVHWQFGQLDQHPIDGYLSHTELAPLRAPLI--PMEHCTTRFFETCDLDNDKYIALDEWAGCFG  217 (229)
T ss_dssp             HHHHHHHHHTTTTCSSEECTTTTGGGGSTTS--TTGGGHHHHHHHHCTTCSSCEEHHHHHHHTT
T ss_pred             HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHh--hHHHHHHHHHHHcCCCCCCcCCHHHHHHHhC
Confidence            34556666666 5666666666666654332  1334456666666666666666666666553

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.56  E-value=5.3e-05  Score=64.41  Aligned_cols=104  Identities=15%  Similarity=0.116  Sum_probs=68.6

Q ss_pred             CCcccEEeccCC-CcC--------cccCCCCCCCEEEccCCCCC-----cCCcCccCCCCCcEEEccCCcCCCC---CCc
Q psy2947          60 FSHAFLLSLSYT-PIG--------RRIFKCDTVEVLSLKSNSLT-----SLPPDIGRLTNLRVLCLTDNCLQNA---SIP  122 (441)
Q Consensus        60 l~~L~~l~l~~n-~i~--------~~~~~l~~L~~L~l~~n~l~-----~lp~~~~~l~~L~~L~l~~n~l~~~---~~p  122 (441)
                      -+.|+.|+|++| .|.        ..+..-+.|+.|+|++|+|.     .|...+..-+.|++|+|++|.|...   .+-
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            456788888875 665        23455678888888888887     2444455667888888888888610   112


Q ss_pred             hhhhcCCCCCEEEccCC---CCC-----ccchhhcCCCCCCEEEccCCc
Q psy2947         123 FTLTFCKNLTHLYLDNN---LLD-----ALPGFLLSMPQLDTVYRHGNH  163 (441)
Q Consensus       123 ~~~~~l~~L~~L~l~~n---~l~-----~lp~~~~~l~~L~~L~l~~N~  163 (441)
                      ..+..-+.|++|+|++|   .++     .+-..+..-++|+.|+++.|.
T Consensus       120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            23444567888888754   444     233556666788888887665

>1nub_A Basement membrane protein BM-40; extracellular module, glycoprotein, anti-adhesive protein, C binding, site-directed mutagenesis; HET: NAG; 2.80A {Homo sapiens} SCOP: a.39.1.3 g.3.11.3 g.68.1.1 PDB: 2v53_A* 1bmo_A*

Probab=97.46  E-value=4.5e-05  Score=66.52  Aligned_cols=62  Identities=13%  Similarity=0.071  Sum_probs=52.6

Q ss_pred             HHHHHHHHhhcC-CCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy2947         334 KEVVDAFKAADT-TKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLV  398 (441)
Q Consensus       334 ~~~~~~f~~~D~-d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~  398 (441)
                      ..+..+|..+|. |+||.|+..|+..++..+.   ..+.-++.+|+..|.|+||.||.+||...+.
T Consensus       155 ~~v~w~F~~lD~~n~dg~l~~~El~~i~~~l~---~~~~c~~~~~~~cD~n~D~~is~~Ew~~cf~  217 (229)
T 1nub_A          155 FPVHWQFGQLDQHPIDGYLSHTELAPLRAPLI---PMEHCTTRFFETCDLDNDKYIALDEWAGCFG  217 (229)
T ss_dssp             HHHHHHHHHHTTTTCSSEECTTTTGGGGSTTS---TTGGGHHHHHHHHCTTCSSCEEHHHHHHHTT
T ss_pred             HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHh---hHHHHHHHHHHHcCCCCCCcCCHHHHHHHhC
Confidence            467889999999 8999999999999775442   2345578899999999999999999999875

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.22  E-value=0.00028  Score=59.91  Aligned_cols=87  Identities=10%  Similarity=0.114  Sum_probs=67.6

Q ss_pred             cCCCCCCCEEEccCC-CCC-----cCCcCccCCCCCcEEEccCCcCCC---CCCchhhhcCCCCCEEEccCCCCC-----
Q psy2947          77 IFKCDTVEVLSLKSN-SLT-----SLPPDIGRLTNLRVLCLTDNCLQN---ASIPFTLTFCKNLTHLYLDNNLLD-----  142 (441)
Q Consensus        77 ~~~l~~L~~L~l~~n-~l~-----~lp~~~~~l~~L~~L~l~~n~l~~---~~~p~~~~~l~~L~~L~l~~n~l~-----  142 (441)
                      +.+-+.|+.|+|++| +|.     .+-..+..-+.|+.|+|++|.|..   ..+...+..-+.|++|+|++|.|+     
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            445678999999985 887     355567778999999999999861   123345566789999999999997     


Q ss_pred             ccchhhcCCCCCCEEEccCCc
Q psy2947         143 ALPGFLLSMPQLDTVYRHGNH  163 (441)
Q Consensus       143 ~lp~~~~~l~~L~~L~l~~N~  163 (441)
                      .|-.++..-+.|+.|+|++|.
T Consensus       117 ala~aL~~N~tL~~L~L~n~~  137 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQR  137 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCCS
T ss_pred             HHHHHHhhCCceeEEECCCCc
Confidence            334667777889999998764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=96.87  E-value=0.00035  Score=58.15  Aligned_cols=82  Identities=13%  Similarity=0.147  Sum_probs=60.0

Q ss_pred             CcccEEeccCCCcCc----ccCCCCCCCEEEccCCC-CCc-CCcCccCC----CCCcEEEccCCc-CCCCCCchhhhcCC
Q psy2947          61 SHAFLLSLSYTPIGR----RIFKCDTVEVLSLKSNS-LTS-LPPDIGRL----TNLRVLCLTDNC-LQNASIPFTLTFCK  129 (441)
Q Consensus        61 ~~L~~l~l~~n~i~~----~~~~l~~L~~L~l~~n~-l~~-lp~~~~~l----~~L~~L~l~~n~-l~~~~~p~~~~~l~  129 (441)
                      ..|+.||++++.|..    .+..+++|+.|+|+++. |+. -=..++.+    ++|++|+|++|. ++...+ ..+..++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~~  139 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFR  139 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGCT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcCC
Confidence            469999999997763    36789999999999985 772 11224454    379999999985 661111 2467899


Q ss_pred             CCCEEEccCCC-CCc
Q psy2947         130 NLTHLYLDNNL-LDA  143 (441)
Q Consensus       130 ~L~~L~l~~n~-l~~  143 (441)
                      +|++|+++++. ++.
T Consensus       140 ~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          140 NLKYLFLSDLPGVKE  154 (176)
T ss_dssp             TCCEEEEESCTTCCC
T ss_pred             CCCEEECCCCCCCCc
Confidence            99999999884 553

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.77  E-value=0.0064  Score=57.99  Aligned_cols=100  Identities=13%  Similarity=0.312  Sum_probs=65.6

Q ss_pred             CCCcccEEeccCC--CcC-cccCCCCCCCEEEccCCCCCcCCcC-ccCCCCCcEEEccCCcCCCCCCch-hhhcCCCCCE
Q psy2947          59 YFSHAFLLSLSYT--PIG-RRIFKCDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPF-TLTFCKNLTH  133 (441)
Q Consensus        59 ~l~~L~~l~l~~n--~i~-~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~p~-~~~~l~~L~~  133 (441)
                      +...|+.+.+..+  .|+ ..+.+++.|+.+.+. +.++.++.. |.++.+|+.+.+..+ ++  .++. .|.++.+|+.
T Consensus       263 ~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~--~I~~~aF~~C~~L~~  338 (394)
T 4gt6_A          263 SCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-IT--QILDDAFAGCEQLER  338 (394)
T ss_dssp             TCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CC--EECTTTTTTCTTCCE
T ss_pred             ecccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-cc--EehHhHhhCCCCCCE
Confidence            4455666666544  233 334566777777775 456666665 777788888888654 44  4443 5677788888


Q ss_pred             EEccCCCCCccc-hhhcCCCCCCEEEccCCc
Q psy2947         134 LYLDNNLLDALP-GFLLSMPQLDTVYRHGNH  163 (441)
Q Consensus       134 L~l~~n~l~~lp-~~~~~l~~L~~L~l~~N~  163 (441)
                      +.+.. .+..|. .+|.++++|+.+.+.++.
T Consensus       339 i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          339 IAIPS-SVTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             EEECT-TCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             EEECc-ccCEEhHhHhhCCCCCCEEEECCce
Confidence            87754 366775 677778888888877765

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.66  E-value=0.0044  Score=59.15  Aligned_cols=76  Identities=14%  Similarity=0.200  Sum_probs=32.6

Q ss_pred             CCCCCEEEccCCCCCcCCcC-ccCCCCCcEEEccCCcCCCCCCch-hhhcCCCCCEEEccCCCCCccc-hhhcCCCCCCE
Q psy2947          80 CDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPF-TLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDT  156 (441)
Q Consensus        80 l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~p~-~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~  156 (441)
                      +.+|+.+.+..+ ++.++.. |.++++|+.+++..+ ++  .++. .|.++.+|+.+.+..| +..|+ .+|.++++|+.
T Consensus       296 ~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~--~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~  370 (394)
T 4fs7_A          296 CSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE--EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKK  370 (394)
T ss_dssp             CTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC--EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCE
T ss_pred             cccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc--EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCE
Confidence            344444444332 3334333 444445555544432 32  2322 3444445555544433 44443 34444445554


Q ss_pred             EEcc
Q psy2947         157 VYRH  160 (441)
Q Consensus       157 L~l~  160 (441)
                      +.+.
T Consensus       371 i~lp  374 (394)
T 4fs7_A          371 VELP  374 (394)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            4443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.46  E-value=0.0083  Score=56.78  Aligned_cols=99  Identities=17%  Similarity=0.340  Sum_probs=65.5

Q ss_pred             CCcccEEeccCC--CcC-cccCCCCCCCEEEccCCCCCcCCcC-ccCCCCCcEEEccCCcCCCCCCch-hhhcCCCCCEE
Q psy2947          60 FSHAFLLSLSYT--PIG-RRIFKCDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPF-TLTFCKNLTHL  134 (441)
Q Consensus        60 l~~L~~l~l~~n--~i~-~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~p~-~~~~l~~L~~L  134 (441)
                      ..+|+.+.+..+  .++ ..+..+..|+.+.+..+ ++.++.. |..+.+|+.+.+..+ ++  .++. .+.++.+|+.+
T Consensus       216 ~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~--~i~~~aF~~c~~L~~i  291 (379)
T 4h09_A          216 GKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK--TVPYLLCSGCSNLTKV  291 (379)
T ss_dssp             CSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS--EECTTTTTTCTTCCEE
T ss_pred             ccccceeeeccceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce--eccccccccccccccc
Confidence            455666666554  333 34456777888877665 5656554 777777888777654 43  4444 45777788888


Q ss_pred             EccCCCCCccc-hhhcCCCCCCEEEccCC
Q psy2947         135 YLDNNLLDALP-GFLLSMPQLDTVYRHGN  162 (441)
Q Consensus       135 ~l~~n~l~~lp-~~~~~l~~L~~L~l~~N  162 (441)
                      .+.++.+..|+ .+|.++.+|+.+.+..+
T Consensus       292 ~l~~~~i~~I~~~aF~~c~~L~~i~lp~~  320 (379)
T 4h09_A          292 VMDNSAIETLEPRVFMDCVKLSSVTLPTA  320 (379)
T ss_dssp             EECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred             cccccccceehhhhhcCCCCCCEEEcCcc
Confidence            88777777776 66777788888877654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.01  E-value=0.0097  Score=56.73  Aligned_cols=95  Identities=16%  Similarity=0.137  Sum_probs=72.5

Q ss_pred             CCCCcccEEeccCC--CcC-cccCCCCCCCEEEccCCCCCcCCcC-ccCCCCCcEEEccCCcCCCCCCch-hhhcCCCCC
Q psy2947          58 QYFSHAFLLSLSYT--PIG-RRIFKCDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPF-TLTFCKNLT  132 (441)
Q Consensus        58 ~~l~~L~~l~l~~n--~i~-~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~p~-~~~~l~~L~  132 (441)
                      ....+|+.+.+..+  .|+ ..+..+++|+.++|..+ ++.|+.. |.++++|+.+.+..| ++  .++. .|.++.+|+
T Consensus       294 ~~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~--~I~~~aF~~C~~L~  369 (394)
T 4fs7_A          294 YGCSSLTEVKLLDSVKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR--KIGANAFQGCINLK  369 (394)
T ss_dssp             TTCTTCCEEEECTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC--EECTTTBTTCTTCC
T ss_pred             cccccccccccccccceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc--EehHHHhhCCCCCC
Confidence            34567777777665  454 34667899999999754 8888766 999999999999877 65  5654 678999999


Q ss_pred             EEEccCCCCCccchhhcCCCCCCEE
Q psy2947         133 HLYLDNNLLDALPGFLLSMPQLDTV  157 (441)
Q Consensus       133 ~L~l~~n~l~~lp~~~~~l~~L~~L  157 (441)
                      .+++..+ +..+...|.++++|+.+
T Consensus       370 ~i~lp~~-~~~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          370 KVELPKR-LEQYRYDFEDTTKFKWI  393 (394)
T ss_dssp             EEEEEGG-GGGGGGGBCTTCEEEEE
T ss_pred             EEEECCC-CEEhhheecCCCCCcEE
Confidence            9999754 55566678888888765

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.44  E-value=0.031  Score=53.19  Aligned_cols=101  Identities=10%  Similarity=0.152  Sum_probs=70.5

Q ss_pred             CCCCCcccEEeccCC--CcCc-ccCCCCCCCEEEccCCCCCcCCcC-ccCCCCCcEEEccCCcCCCCCCch-hhhcCCCC
Q psy2947          57 PQYFSHAFLLSLSYT--PIGR-RIFKCDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPF-TLTFCKNL  131 (441)
Q Consensus        57 ~~~l~~L~~l~l~~n--~i~~-~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~p~-~~~~l~~L  131 (441)
                      +.+...|+.+.+..+  .|+. .+..+.+|+.+.|..+ ++.|+.. |.++.+|+.+.+..+ ++  .++. .|.++.+|
T Consensus       284 F~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~--~I~~~aF~~C~~L  359 (394)
T 4gt6_A          284 FMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT--KIPESAFSNCTAL  359 (394)
T ss_dssp             TTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC--BCCGGGGTTCTTC
T ss_pred             cccccccccccCCCcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC--EEhHhHhhCCCCC
Confidence            445678888888765  5664 4667899999999864 7777766 999999999999765 55  5654 67999999


Q ss_pred             CEEEccCCCCCccchhhcCCCCCCEEEccCCc
Q psy2947         132 THLYLDNNLLDALPGFLLSMPQLDTVYRHGNH  163 (441)
Q Consensus       132 ~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~N~  163 (441)
                      +.+++.++... + ..+..+.+|+.+.+..|.
T Consensus       360 ~~i~~~~~~~~-~-~~~~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          360 NNIEYSGSRSQ-W-NAISTDSGLQNLPVAPGS  389 (394)
T ss_dssp             CEEEESSCHHH-H-HTCBCCCCC---------
T ss_pred             CEEEECCceee-h-hhhhccCCCCEEEeCCCC
Confidence            99999887432 1 456677888888877665

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.39  E-value=0.075  Score=50.08  Aligned_cols=85  Identities=16%  Similarity=0.192  Sum_probs=55.3

Q ss_pred             ccCCCCCCCEEEccCCCCCcCCcC-ccCCCCCcEEEccCCcCCCCCCch-hhhcCCCCCEEEccCCCCCccc-hhhcCCC
Q psy2947          76 RIFKCDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPF-TLTFCKNLTHLYLDNNLLDALP-GFLLSMP  152 (441)
Q Consensus        76 ~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~p~-~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~  152 (441)
                      .+..+.+|+.+.+..+ +..++.. +..+..|+.+.+..+ ++  .++. .+.++.+|+.+.+.. .+..++ ..|.+++
T Consensus       212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~--~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~  286 (379)
T 4h09_A          212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VT--SIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCS  286 (379)
T ss_dssp             TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CC--EECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCT
T ss_pred             ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-cc--EeCccccceeehhccccccc-cceecccccccccc
Confidence            3445667777777544 4444444 777778888887765 43  4443 456777788877753 466666 5677778


Q ss_pred             CCCEEEccCCcCc
Q psy2947         153 QLDTVYRHGNHNY  165 (441)
Q Consensus       153 ~L~~L~l~~N~~~  165 (441)
                      +|+.+.+.++.+.
T Consensus       287 ~L~~i~l~~~~i~  299 (379)
T 4h09_A          287 NLTKVVMDNSAIE  299 (379)
T ss_dssp             TCCEEEECCTTCC
T ss_pred             ccccccccccccc
Confidence            8888888776653

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=95.32  E-value=0.051  Score=54.09  Aligned_cols=61  Identities=15%  Similarity=0.228  Sum_probs=55.6

Q ss_pred             hHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy2947         370 PKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA  433 (441)
Q Consensus       370 ~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l  433 (441)
                      ......+|...|. .+|+|+-++.+.+|.+-|  ++.+.+..+....|.|+||.++.+||+-+|
T Consensus       457 ~~~y~~~F~~~~~-~~g~i~g~~a~~~~~~s~--Lp~~~L~~IW~l~D~~~~g~L~~~eF~~am  517 (550)
T 2qpt_A          457 KSKYDEIFYNLAP-ADGKLSGSKAKTWMVGTK--LPNSVLGRIWKLSDVDRDGMLDDEEFALAS  517 (550)
T ss_dssp             HHHHHHHHHHTCC-SSSEECHHHHHHHHHHTT--CCHHHHHHHHHHHCSSCSSSEEHHHHHHHH
T ss_pred             HHHHHHHHHhcCC-CCCeecHHHHHHHHHHcC--CCHHHHHHHhcccCCCCCCcCCHHHHHHHH
Confidence            4577889999995 469999999999998877  899999999999999999999999999877

>1pul_A Hypothetical protein C32E8.3 in chromosome I; alpha helical, northeast structural genomics consortium, PSI, protein structure initiative; NMR {Caenorhabditis elegans} SCOP: a.39.1.11

Probab=94.26  E-value=0.28  Score=37.57  Aligned_cols=48  Identities=13%  Similarity=0.239  Sum_probs=28.3

Q ss_pred             CCcccHHHHHHHHHHhC----CCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy2947         385 SGTVPAKYLKHVLVNWG----EGLSSKEVDQIFREANVTMNSKVRYEDFVKIA  433 (441)
Q Consensus       385 ~G~is~~ef~~~l~~~~----~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l  433 (441)
                      ...|+-..|..+++..+    ..++.-+++-+|.++ ..+..+|+|++|+.+|
T Consensus        39 ~~~M~~k~f~K~~kD~~lidgk~iT~TdvDIiF~Kv-~k~~r~I~f~qF~~aL   90 (125)
T 1pul_A           39 ATEMTGKNFDKWLKDAGVLDNKAITGTMTGIAFSKV-TGPKKKATFDETKKVL   90 (125)
T ss_dssp             SSCCCHHHHHHHHHHHTSCCSSSSCHHHHHHHHHHH-TCSSSCCCHHHHHHHH
T ss_pred             cccCcHHHHHHHHHHCCCCCCCCCCccccceeehcc-cCCcceecHHHHHHHH
Confidence            35566666666666532    345566666666666 4445556666666655

>2l5y_A Stromal interaction molecule 2; EF-hand, SAM domain, store OPE calcium entry, signaling protein; NMR {Homo sapiens}

Probab=93.28  E-value=0.46  Score=37.73  Aligned_cols=77  Identities=12%  Similarity=0.082  Sum_probs=52.2

Q ss_pred             HHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhC-CCCCHHHHHHH
Q psy2947         334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWG-EGLSSKEVDQI  412 (441)
Q Consensus       334 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~-~~l~~~~~~~l  412 (441)
                      +.++.+|+.+|.|.||.|+..|=..+++.........+ -..   .++ .+|..||.+|+-+.++.-. ...+.+++...
T Consensus        15 eAi~~~H~~lDdD~dG~Id~~Es~~Flre~~~~~d~~~-k~~---~~h-~~D~~Isv~eLw~~W~~s~V~nWTvedV~~W   89 (150)
T 2l5y_A           15 EALQTIHKQMDDDKDGGIEVEESDEFIREDMKYKDATN-KHS---HLH-REDKHITIEDLWKRWKTSEVHNWTLEDTLQW   89 (150)
T ss_dssp             HHHHHHHHHHSSSCSSCBCHHHHHHHHHHHTTTTCSHH-HHH---HHT-TTCCCBCHHHHHHHHHTSHHHHCCHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCCcHHHHHHHHHHHhcccCchh-HHh---hhc-CCCCeeeHHHHHHHHccCcchhCCHHHHHHH
Confidence            45778899999999999999999999987644333222 122   333 3578999999988886421 12555665554


Q ss_pred             HHH
Q psy2947         413 FRE  415 (441)
Q Consensus       413 ~~~  415 (441)
                      +..
T Consensus        90 L~~   92 (150)
T 2l5y_A           90 LIE   92 (150)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>2kav_A Sodium channel protein type 2 subunit alpha; voltage-gated sodium channel, alternative splicing, disease epilepsy, glycoprotein, ION transport; NMR {Homo sapiens} PDB: 2kbi_A

Probab=93.24  E-value=0.068  Score=41.43  Aligned_cols=76  Identities=12%  Similarity=0.093  Sum_probs=53.0

Q ss_pred             CCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCC---HHHHHHHHHHhCC--C
Q psy2947         345 TTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLS---SKEVDQIFREANV--T  419 (441)
Q Consensus       345 ~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~---~~~~~~l~~~~d~--d  419 (441)
                      .+.+..|+.++|.              .+.++|..||++++|+|.+.+|..++..+..++.   ....  .+..+|.  .
T Consensus        31 ~~~~~~l~~~dl~--------------~F~~~W~~fDP~aTg~I~~~~L~~ll~~L~pPLgi~kpnr~--~L~~mniPl~   94 (129)
T 2kav_A           31 EESAEPLSEDDFE--------------MFYEVWEKFDPDATQFIEFAKLSDFADALDPPLLIAKPNKV--QLIAMDLPMV   94 (129)
T ss_dssp             SSCSCSSCHHHHH--------------HHHHHHHHHCTTCCCEECGGGHHHHHHHSCTTSCCCTTCCH--HHHHTCCCEE
T ss_pred             HhhccCCCHHHHH--------------HHHHHHHhcCCCCceEEeHHHHHHHHHhCCccccCCCccHH--HHHHcCCccC
Confidence            4444556666654              3456899999999999999999999998764431   1111  2336664  2


Q ss_pred             CCCceeHHHHHHHHhcc
Q psy2947         420 MNSKVRYEDFVKIACAP  436 (441)
Q Consensus       420 ~dg~i~~~ef~~~l~~~  436 (441)
                      .+++|-|-+.+.++.+.
T Consensus        95 ~g~~Vhf~dvL~ALtr~  111 (129)
T 2kav_A           95 SGDRIHCLDILFAFTKR  111 (129)
T ss_dssp             TTTEEEHHHHHHHHHHH
T ss_pred             CCCEEeHHHHHHHHHHH
Confidence            45689999998888765

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=92.88  E-value=0.27  Score=48.78  Aligned_cols=63  Identities=14%  Similarity=0.054  Sum_probs=53.9

Q ss_pred             CHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy2947         332 IPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLV  398 (441)
Q Consensus       332 ~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~  398 (441)
                      .......+|...|.. +|.|+-++-+.++..-   ....+.+..+|...|.+++|.++.+||.-+|.
T Consensus       456 ~~~~y~~~F~~~~~~-~g~i~g~~a~~~~~~s---~Lp~~~L~~IW~l~D~~~~g~L~~~eF~~am~  518 (550)
T 2qpt_A          456 DKSKYDEIFYNLAPA-DGKLSGSKAKTWMVGT---KLPNSVLGRIWKLSDVDRDGMLDDEEFALASH  518 (550)
T ss_dssp             THHHHHHHHHHTCCS-SSEECHHHHHHHHHHT---TCCHHHHHHHHHHHCSSCSSSEEHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCC-CCeecHHHHHHHHHHc---CCCHHHHHHHhcccCCCCCCcCCHHHHHHHHH
Confidence            457789999999954 6999999988887643   45578899999999999999999999998886

>2jrf_A Tubulin polymerization-promoting protein family member 3; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=92.36  E-value=0.51  Score=38.83  Aligned_cols=67  Identities=9%  Similarity=0.108  Sum_probs=35.9

Q ss_pred             HHHHHHHHhhcCCCCC-----cccHHHHHHHHHhhc--c-CCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         334 KEVVDAFKAADTTKSG-----KLSFPDFLKVMHTHS--K-AEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       334 ~~~~~~f~~~D~d~~g-----~i~~~ef~~~~~~~~--~-~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      ..+..+|..|-.-+++     .++-..|..+++...  . .......+..+|..+-..+...|++++|.++|..+
T Consensus         8 ~~L~~~F~~F~~fG~~~~~~~eMd~~~F~KlcKD~~liDgk~~T~tdvDIiF~KvK~k~~rkI~feqF~~aL~~l   82 (184)
T 2jrf_A            8 AGLEESFRKFAIHGDPKASGQEMNGKNWAKLCKDCKVADGKSVTGTDVDIVFSKVKGKSARVINYEEFKKALEEL   82 (184)
T ss_dssp             SHHHHHHHHHHSSSCTTSTTSEEEHHHHHHHHHHTTCCCSSSSCHHHHHHHHHHHCCSCCSEEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHcCCccCCCCChhhcchhhheeccCcceeecHHHHHHHHHHH
Confidence            3455555555554443     456666666665432  1 23334556666666654555666666666666443

>1wlm_A Protein CGI-38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.39.1.11

Probab=92.06  E-value=0.55  Score=37.41  Aligned_cols=66  Identities=9%  Similarity=0.124  Sum_probs=37.8

Q ss_pred             HHHHHHHHhhcCCCC-----CcccHHHHHHHHHhhc--c-CCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         334 KEVVDAFKAADTTKS-----GKLSFPDFLKVMHTHS--K-AEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       334 ~~~~~~f~~~D~d~~-----g~i~~~ef~~~~~~~~--~-~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      ..+..+|..|-.-|+     ..++-..|..+++...  . .......+..+|..+-..+...|++++|.++|..
T Consensus        15 ~~L~~~F~~F~~fG~~~~~~~~M~~~~f~Kl~kD~~lidgk~~T~tdvDiiF~KvK~k~~rkI~f~qF~~aL~~   88 (151)
T 1wlm_A           15 AGLEESFRKFAIHGDPKASGQEMNGKNWAKLCKDCKVADGKAVTGTDVDIVFSKVKAKSARVINYEEFKKALEE   88 (151)
T ss_dssp             CSHHHHHHHHHTSSCSSCCSSEEEHHHHHHHHHHTSCCCSSSSCHHHHHHHHHHHSCSSCSEEEHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCcccccCCHHHHHHHHHHCCCCcCCCCChhhcceehheeccCccceecHHHHHHHHHH
Confidence            346666666655433     2466666666666432  1 2333456666666665555666777777666654

>2k60_A Protein (stromal interaction molecule 1); EF-hand, SAM domain, EF-SAM, STIM1, store operated calcium entry regulator, SOCE; NMR {Homo sapiens}

Probab=91.39  E-value=0.18  Score=40.01  Aligned_cols=74  Identities=14%  Similarity=0.102  Sum_probs=49.6

Q ss_pred             HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhC-CCCCHHHHHH
Q psy2947         333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWG-EGLSSKEVDQ  411 (441)
Q Consensus       333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~-~~l~~~~~~~  411 (441)
                      .+.++.+|+.+|.|.||.|+..|=..+++........... ...|   .. +|..||.+|+-+.++.-. ...+.+++..
T Consensus        14 ~eAi~~lH~~lDdD~dG~Id~~Es~~flredl~~~d~~~~-~~~f---h~-~D~~Isv~eLw~~W~~s~V~nWTvedV~~   88 (150)
T 2k60_A           14 FEAVRNIHKLMDDDANGDVDVEESDEFLREDLNYHDPTVK-HSTF---HG-EDKLISVEDLWKAWKSSEVYNWTVDEVVQ   88 (150)
T ss_dssp             HHHHHHHHHTTCTTCSSEECTTTTTTHHHHHTTSSCTHHH-HHHH---TS-SSCCEEHHHHHHHHHHSHHHHCCHHHHHH
T ss_pred             hHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhccccchhh-hhcc---cC-CCCeeeHHHHHHHhccCccccCCHHHHHH
Confidence            4667888899999999999999888888765433332222 3344   32 678999999988876421 1244455443

>2l5y_A Stromal interaction molecule 2; EF-hand, SAM domain, store OPE calcium entry, signaling protein; NMR {Homo sapiens}

Probab=90.94  E-value=1.1  Score=35.48  Aligned_cols=58  Identities=12%  Similarity=0.087  Sum_probs=42.1

Q ss_pred             HHHHHHHHHhCCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy2947         371 KEVVDAFKAADTTKSGTVPAKYLKHVLVNW-GEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA  433 (441)
Q Consensus       371 ~~~~~~f~~~D~~~~G~is~~ef~~~l~~~-~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l  433 (441)
                      +.++.+++.+|.|+||.|+.+|-..++++. +..-.. +-.   ..++ .+|..||.+|+...-
T Consensus        15 eAi~~~H~~lDdD~dG~Id~~Es~~Flre~~~~~d~~-~k~---~~~h-~~D~~Isv~eLw~~W   73 (150)
T 2l5y_A           15 EALQTIHKQMDDDKDGGIEVEESDEFIREDMKYKDAT-NKH---SHLH-REDKHITIEDLWKRW   73 (150)
T ss_dssp             HHHHHHHHHHSSSCSSCBCHHHHHHHHHHHTTTTCSH-HHH---HHHT-TTCCCBCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCCcHHHHHHHHHHHhcccCch-hHH---hhhc-CCCCeeeHHHHHHHH
Confidence            567889999999999999999999999984 322122 222   2333 347889999987644

>1pul_A Hypothetical protein C32E8.3 in chromosome I; alpha helical, northeast structural genomics consortium, PSI, protein structure initiative; NMR {Caenorhabditis elegans} SCOP: a.39.1.11

Probab=89.95  E-value=2.7  Score=32.08  Aligned_cols=68  Identities=15%  Similarity=0.045  Sum_probs=48.3

Q ss_pred             HHHHHHHHHhhcCC---CCCcccHHHHHHHHHhhc--c-CCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhC
Q psy2947         333 PKEVVDAFKAADTT---KSGKLSFPDFLKVMHTHS--K-AEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWG  401 (441)
Q Consensus       333 ~~~~~~~f~~~D~d---~~g~i~~~ef~~~~~~~~--~-~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~  401 (441)
                      ...+..+|..|-.-   +...|+-..|...++...  . ...+..++..+|..+ ..+...|++++|..+|..+.
T Consensus        21 ~~~L~~~F~~Fa~fG~~~~~~M~~k~f~K~~kD~~lidgk~iT~TdvDIiF~Kv-~k~~r~I~f~qF~~aL~~lA   94 (125)
T 1pul_A           21 DADVKKRWDAFTKFGAATATEMTGKNFDKWLKDAGVLDNKAITGTMTGIAFSKV-TGPKKKATFDETKKVLAFVA   94 (125)
T ss_dssp             HHHHHHHHHHHHHHTCSSSSCCCHHHHHHHHHHHTSCCSSSSCHHHHHHHHHHH-TCSSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCccccCcHHHHHHHHHHCCCCCCCCCCccccceeehcc-cCCcceecHHHHHHHHHHHH
Confidence            34455555554332   336788888888887643  2 445567888999999 77788999999999998753

>4fl4_A Glycoside hydrolase family 9; structural genomics, montreal-kingston bacterial structural initiative, BSGI, dockerin; 2.80A {Clostridium thermocellum} PDB: 3p0d_A

Probab=89.17  E-value=0.61  Score=33.37  Aligned_cols=55  Identities=22%  Similarity=0.178  Sum_probs=31.4

Q ss_pred             cCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         344 DTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       344 D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      |.|+||.|+..++..+.+-+........ -..-....|.|+||.|+..++..+-+-
T Consensus        24 DvNgDG~Vn~~D~~llk~yllg~~~~~~-~~~~~~aADvNgDG~In~~D~~~lkky   78 (88)
T 4fl4_A           24 DVNDDGKVNSTDLTLLKRYVLKAVSTLP-SSKAEKNADVNRDGRVNSSDVTILSRY   78 (88)
T ss_dssp             CTTCSSCCSHHHHHHHHHHHHTSSCCCS-SHHHHHHHCTTCSSCCSHHHHHHHHHH
T ss_pred             cCCCCCcCCHHHHHHHHHHHcCCCCCCc-hhhhhhhccccCCCCcCHHHHHHHHHH
Confidence            6777777777777665554432211100 012345677777787777777655443

>4fl4_A Glycoside hydrolase family 9; structural genomics, montreal-kingston bacterial structural initiative, BSGI, dockerin; 2.80A {Clostridium thermocellum} PDB: 3p0d_A

Probab=89.07  E-value=0.34  Score=34.66  Aligned_cols=52  Identities=15%  Similarity=0.157  Sum_probs=36.2

Q ss_pred             HHhCCCCCCcccHHHHHHHHHHh-CC-CCCHHHHHHHHHHhCCCCCCceeHHHHHH
Q psy2947         378 KAADTTKSGTVPAKYLKHVLVNW-GE-GLSSKEVDQIFREANVTMNSKVRYEDFVK  431 (441)
Q Consensus       378 ~~~D~~~~G~is~~ef~~~l~~~-~~-~l~~~~~~~l~~~~d~d~dg~i~~~ef~~  431 (441)
                      ..=|.|+||.|+..++..+.+-+ |. .....  +.-+...|.|+||.|+-.++..
T Consensus        21 ~~GDvNgDG~Vn~~D~~llk~yllg~~~~~~~--~~~~~aADvNgDG~In~~D~~~   74 (88)
T 4fl4_A           21 HMGDVNDDGKVNSTDLTLLKRYVLKAVSTLPS--SKAEKNADVNRDGRVNSSDVTI   74 (88)
T ss_dssp             CTTCTTCSSCCSHHHHHHHHHHHHTSSCCCSS--HHHHHHHCTTCSSCCSHHHHHH
T ss_pred             ccccCCCCCcCCHHHHHHHHHHHcCCCCCCch--hhhhhhccccCCCCcCHHHHHH
Confidence            34589999999999998877764 32 12111  1124578999999999888753

>3kev_A Galieria sulfuraria DCUN1 domain-containing prote; cullin, neddylation, DCN-1, center for eukaryotic structural genomics, PSI; HET: CSO MSE; 1.30A {Galdieria sulphuraria}

Probab=89.07  E-value=4.1  Score=34.14  Aligned_cols=100  Identities=7%  Similarity=0.077  Sum_probs=60.4

Q ss_pred             CHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHH
Q psy2947         332 IPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQ  411 (441)
Q Consensus       332 ~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~  411 (441)
                      ...++.++|..|-...+..|+.+-..+++..+.-..... .+-.+-..+....-|.+|.+||.+.|..+|.. +-+.++.
T Consensus         5 ~~~~l~~lF~~Y~d~~~~~I~~dG~~~~~~DLgv~ped~-~~LvLaw~l~a~~~g~ftr~ef~~G~~~l~~d-si~~lk~   82 (199)
T 3kev_A            5 DKKAILELFQTYKEPLGNYIGAEGLQRLFEDIQVDPSDV-VTLVLAWKLKASSTCEFSEKEFVEGLANLQVD-SLEKLKR   82 (199)
T ss_dssp             CHHHHHHHHHHHCCTTSSEECHHHHHHHHHHTTCCTTSH-HHHHHHHHTTCCSTTCEEHHHHHHHHHHTTCC-SHHHHHH
T ss_pred             CHHHHHHHHHHhcCCCcCccCHHHHHHHHHHcCCChhhH-HHHHHHHHcCCCccCcccHHHHHHHHHHhCCC-CHHHHHH
Confidence            456677777777533334899999999988875544332 33333444666778999999999999998854 3333444


Q ss_pred             HHHHhCCCCCCceeHHHHHHHH
Q psy2947         412 IFREANVTMNSKVRYEDFVKIA  433 (441)
Q Consensus       412 l~~~~d~d~dg~i~~~ef~~~l  433 (441)
                      .+..+...-...-.|.+|.++.
T Consensus        83 ~l~~l~~~l~d~~~Fk~~Y~ft  104 (199)
T 3kev_A           83 KLSSLRKEIEDPSKFRAFYQFV  104 (199)
T ss_dssp             HHHHHHHHTTSHHHHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHH
Confidence            3333322222233455554443

>2ccl_B Endo-1,4-beta-xylanase Y; cell adhesion, cohesin/dockerin complex, cellulosome, cohesi dockerin, scaffolding, cellulose degradation; 2.03A {Clostridium thermocellum} SCOP: a.139.1.1 PDB: 1ohz_B

Probab=88.91  E-value=1.8  Score=28.73  Aligned_cols=53  Identities=21%  Similarity=0.220  Sum_probs=30.8

Q ss_pred             cCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         344 DTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       344 D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      |.|++|.|+..+|..+-+.+.......   ..-+...|.++||.|+..+|..+-+.
T Consensus         6 DvN~DG~vn~~D~~~l~~yllg~~~~~---~~~~~~aDvn~DG~in~~D~~~l~~~   58 (63)
T 2ccl_B            6 DVNGDGTINSTDLTMLKRSVLRAITLT---DDAKARADVDKNGSINAADVLLLSRY   58 (63)
T ss_dssp             CTTCSSSCCHHHHHHHHHHHTTSSCCC---HHHHHHHCTTCSSCCSHHHHHHHHHH
T ss_pred             ccCCCCcCCHHHHHHHHHHHcCCCccc---cchhhhhccCCCCCccHHHHHHHHHH
Confidence            667777777777755544332222111   12245667777777777777655543

>3tdu_A DCN1-like protein 1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_A 4gao_A*

Probab=88.87  E-value=2  Score=36.07  Aligned_cols=101  Identities=9%  Similarity=0.107  Sum_probs=0.0

Q ss_pred             CCHHHHHHHHHhh-cCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHH
Q psy2947         331 DIPKEVVDAFKAA-DTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEV  409 (441)
Q Consensus       331 ~~~~~~~~~f~~~-D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~  409 (441)
                      .+..++.++|..| |.++...|..+-..+++..+ +-....-.+-.+-..+....-|.+|.+||.+.|.++|. -+-+.+
T Consensus         1 ~~~~~l~~lF~~Y~d~~~~d~I~~dG~~~~~~DL-gv~ped~~~Lvlaw~l~a~~~g~ftr~ef~~G~~~l~~-dsi~~l   78 (200)
T 3tdu_A            1 GSRKKLEQLYNRYKDPQDENKIGIDGIQQFCDDL-ALDPASISVLIIAWKFRAATQCEFSKQEFMDGMTELGC-DSIEKL   78 (200)
T ss_dssp             CCHHHHHHHHHHHEETTEEEEECHHHHHHHHHHH-TCCTTSHHHHHHHHHTTCSSTTCEEHHHHHHHHHHHTC-SSHHHH
T ss_pred             CCHHHHHHHHHHhcCCCCCCccCHHHHHHHHHHc-CCChhhHHHHHHHHHcCCCccCccCHHHHHHHHHHHcc-ccHHHH


Q ss_pred             HHHHHHhCCCCCCceeHHHHHHHH
Q psy2947         410 DQIFREANVTMNSKVRYEDFVKIA  433 (441)
Q Consensus       410 ~~l~~~~d~d~dg~i~~~ef~~~l  433 (441)
                      +..+..+...-...-.|.+|.++.
T Consensus        79 k~~l~~l~~~l~d~~~Fk~~Y~ft  102 (200)
T 3tdu_A           79 KAQIPKMEQELKEPGRFKDFYQFT  102 (200)
T ss_dssp             HHTHHHHHHHTTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHH

>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A

Probab=88.36  E-value=0.47  Score=38.53  Aligned_cols=61  Identities=8%  Similarity=0.086  Sum_probs=41.5

Q ss_pred             HHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCC----CHHHHHHHHHHhCC--CCCCceeHHHHHHHHhc
Q psy2947         372 EVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGL----SSKEVDQIFREANV--TMNSKVRYEDFVKIACA  435 (441)
Q Consensus       372 ~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l----~~~~~~~l~~~~d~--d~dg~i~~~ef~~~l~~  435 (441)
                      .+..+|..||++++|+|.+.++..++..+..++    +..   ..+..+|.  ..+|+|-|-+.+.+|.+
T Consensus        21 ~F~~~W~~fDP~ATgfI~~~~L~~~l~~L~pPLg~~kPn~---~~L~~mdiPl~~~~~Vhf~dvL~ALtk   87 (168)
T 4dck_A           21 MFYEIWEKFDPEATQFIEYSVLSDFADALSEPLRIAKPNQ---ISLINMDLPMVSGDRIHCMDILFAFTK   87 (168)
T ss_dssp             HHHHHHHHHCTTCCSEEEGGGHHHHHHHSCTTTCCCSSCH---HHHHHSCCEEETTTEEEHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCcceeeHHHHHHHHHhcCCCCcCCCCCH---HHHHHcCCCcCCCCEEeHHHHHHHHHH
Confidence            344578888888888888888888888765443    221   12455663  45678888887777654

>3ul4_B Cellulosome enzyme, dockerin type I; cohesin, type I cohesin-dockerin COMP protein-protein interaction, cell adhesion; HET: PEG; 1.95A {Clostridium thermocellum}

Probab=87.81  E-value=1  Score=30.20  Aligned_cols=51  Identities=18%  Similarity=0.264  Sum_probs=32.4

Q ss_pred             cCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy2947         344 DTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLV  398 (441)
Q Consensus       344 D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~  398 (441)
                      |.|+||.|+..++..+.+.+........   . ....|.++||.|+..++..+-+
T Consensus         7 DvN~DG~Vn~~D~~llk~yllg~~~~~~---~-~~~ADvn~DG~In~~D~~~lk~   57 (65)
T 3ul4_B            7 DLNRNGIVNDEDYILLKNYLLRGNKLVI---D-LNVADVNKDGKVNSTDCLFLKK   57 (65)
T ss_dssp             CTTCSSCCSHHHHHHHHHHHTTCSSCCC---C-GGGCCTTCSSCCSHHHHHHHHH
T ss_pred             cCCCCCcCCHHHHHHHHHHHCCCCCCch---H-HHhccccCCCCCCHHHHHHHHH
Confidence            6678888888887766655543221111   1 4567888888888887765544

>4dh2_B Dockerin type 1; cellulosome, cohesin, type I cohesin-dockerin, Pro protein interaction, cell adhesion; 1.75A {Clostridium thermocellum}

Probab=87.67  E-value=0.33  Score=34.36  Aligned_cols=55  Identities=9%  Similarity=0.032  Sum_probs=32.0

Q ss_pred             cCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         344 DTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       344 D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      |.|+||.|+..++..+.+.+.+..... ....-....|.|+||.|+..++..+-+.
T Consensus         9 DvN~DG~Vn~~D~~llk~yllg~~~~~-~~~~~~~~ADvngDG~In~~D~~~lk~y   63 (82)
T 4dh2_B            9 DVNADGVVNISDYVLMKRYILRIIADF-PADDDMWVGDVNGDNVINDIDCNYLKRY   63 (82)
T ss_dssp             CTTCSSSCSHHHHHHHHHHHTTSSSSC-SSSCHHHHHCSSSSSCCSHHHHHHHHHH
T ss_pred             ccCCCCcCCHHHHHHHHHHHcCCCccC-ccccchhheeccCCCcCCHHHHHHHHHH
Confidence            677777777777776665553322110 0012345667777777777777655444

>2y3n_B Cellulosomal family-48 processive glycoside hydro; structrual protein-hydrolase complex, cellulosome; 1.90A {Bacteroides cellulosolvens}

Probab=87.47  E-value=0.95  Score=30.97  Aligned_cols=52  Identities=13%  Similarity=0.215  Sum_probs=33.7

Q ss_pred             cCCCCCcccHHHHHHHHHhhc-cCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         344 DTTKSGKLSFPDFLKVMHTHS-KAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       344 D~d~~g~i~~~ef~~~~~~~~-~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      |.|+||.|+..++..+-+.+. .+...  ...   ...|.++||.|+..++..+-+.+
T Consensus         8 DvN~DG~vn~~D~~~l~~yl~~lg~~~--~~~---~~aDvN~DG~in~~D~~~l~~~l   60 (71)
T 2y3n_B            8 DLNGDGVINMADVMILAQSFGKAIGNP--GVN---EKADLNNDGVINSDDAIILAQYF   60 (71)
T ss_dssp             CTTSSSBCSHHHHHHHHHTTTCBC-----------CTTCTTCSSBCSHHHHHHHHHHT
T ss_pred             cCCCCCcCCHHHHHHHHHHHHHhCCCc--CCC---ccccccCCCcccHHHHHHHHHHH
Confidence            678888888888876654441 11111  111   67788999999988887776654

>2vn6_B Endoglucanase A; cell adhesion, carbohydrate metabolism, polysaccharide degradation, hydrolase, glycosidase, cellulose degradation; 1.49A {Clostridium cellulolyticum} PDB: 2vn5_B

Probab=87.47  E-value=1.5  Score=29.26  Aligned_cols=50  Identities=20%  Similarity=0.125  Sum_probs=31.1

Q ss_pred             cCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         344 DTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       344 D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      |.|++|.|+..+|..+-+.+........      ...|.++||.|+..+|..+-+.
T Consensus         6 DvN~DG~vn~~D~~~l~~yllg~~~~~~------~~aDvn~DG~in~~D~~~l~~~   55 (64)
T 2vn6_B            6 DYNNDGNVDSTDFAGLKKYIMAADHAYV------KNLDVNLDNEVNAFDLAILKKY   55 (64)
T ss_dssp             CTTSSSCCSHHHHHHHHHHHHSTTCCCC------GGGCTTCSSCCSHHHHHHHHHH
T ss_pred             cCCCCCcCCHHHHHHHHHHHccCCccch------hhhcccCCCcccHHHHHHHHHH
Confidence            6678888887777655443322221111      5678888888888887666554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	441
d5pala_	109	a.39.1.4 (A:) Parvalbumin {Leopard shark (Triakis	3e-16
d5pala_	109	a.39.1.4 (A:) Parvalbumin {Leopard shark (Triakis	0.001
d2obha1	141	a.39.1.5 (A:26-166) Calmodulin {Human (Homo sapien	3e-15
d2obha1	141	a.39.1.5 (A:26-166) Calmodulin {Human (Homo sapien	5e-04
d1pvaa_	109	a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [Tax	4e-15
d1pvaa_	109	a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [Tax	2e-08
d1pvaa_	109	a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [Tax	7e-04
d1exra_	146	a.39.1.5 (A:) Calmodulin {Ciliate (Paramecium tetr	7e-14
d1w7jb1	139	a.39.1.5 (B:11-149) Myosin Essential Chain {Human	1e-13
d1rwya_	109	a.39.1.4 (A:) Parvalbumin {Rat (Rattus rattus) [Ta	4e-13
d1rwya_	109	a.39.1.4 (A:) Parvalbumin {Rat (Rattus rattus) [Ta	0.003
d2pvba_	107	a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [Tax	2e-12
d1rroa_	108	a.39.1.4 (A:) Oncomodulin {Rat (Rattus norvegicus)	4e-12
d1rroa_	108	a.39.1.4 (A:) Oncomodulin {Rat (Rattus norvegicus)	7e-07
d1rroa_	108	a.39.1.4 (A:) Oncomodulin {Rat (Rattus norvegicus)	0.002
d1lkja_	146	a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharom	5e-12
d1topa_	162	a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus)	2e-11
d1topa_	162	a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus)	0.004
d1dtla_	156	a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus)	2e-11
d1juoa_	172	a.39.1.8 (A:) Sorcin {Human (Homo sapiens) [TaxId:	6e-11
d1bjfa_	181	a.39.1.5 (A:) Neurocalcin {Cow (Bos taurus) [TaxId	2e-10
d1bjfa_	181	a.39.1.5 (A:) Neurocalcin {Cow (Bos taurus) [TaxId	2e-04
d1ij5a_	321	a.39.1.9 (A:) Cbp40 (plasmodial specific CaII-bind	3e-10
d1ij5a_	321	a.39.1.9 (A:) Cbp40 (plasmodial specific CaII-bind	2e-05
d1ij5a_	321	a.39.1.9 (A:) Cbp40 (plasmodial specific CaII-bind	2e-04
d1qxpa2	188	a.39.1.8 (A:515-702) Calpain large subunit, C-term	3e-10
d1qxpa2	188	a.39.1.8 (A:515-702) Calpain large subunit, C-term	4e-07
d1qxpa2	188	a.39.1.8 (A:515-702) Calpain large subunit, C-term	3e-05
d1oqpa_	77	a.39.1.5 (A:) Caltractin (centrin 2) {Green algae	3e-10
d1oqpa_	77	a.39.1.5 (A:) Caltractin (centrin 2) {Green algae	2e-06
d1s6ja_	87	a.39.1.5 (A:) Calcium-dependent protein kinase sk5	4e-10
d1s6ja_	87	a.39.1.5 (A:) Calcium-dependent protein kinase sk5	5e-04
d1s6ja_	87	a.39.1.5 (A:) Calcium-dependent protein kinase sk5	0.003
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-10
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-04
d1k94a_	165	a.39.1.8 (A:) Grancalcin {Human (Homo sapiens) [Ta	7e-10
d1df0a1	186	a.39.1.8 (A:515-700) Calpain large subunit, C-term	9e-10
d1df0a1	186	a.39.1.8 (A:515-700) Calpain large subunit, C-term	3e-04
d2fcea1	61	a.39.1.5 (A:84-144) Calmodulin {Cow (Bos taurus) [	1e-09
d2fcea1	61	a.39.1.5 (A:84-144) Calmodulin {Cow (Bos taurus) [	0.002
d1fw4a_	65	a.39.1.5 (A:) Calmodulin {Cow (Bos taurus) [TaxId:	1e-09
d1fw4a_	65	a.39.1.5 (A:) Calmodulin {Cow (Bos taurus) [TaxId:	3e-05
d1fw4a_	65	a.39.1.5 (A:) Calmodulin {Cow (Bos taurus) [TaxId:	0.001
d1fi5a_	81	a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus),	2e-09
d1fi5a_	81	a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus),	3e-04
d1fi5a_	81	a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus),	6e-04
d1fi5a_	81	a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus),	6e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.002
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.004
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-04
d1c7va_	68	a.39.1.5 (A:) Calcium vector protein {Amphioxus (B	8e-09
d1c7va_	68	a.39.1.5 (A:) Calcium vector protein {Amphioxus (B	2e-05
d1c7va_	68	a.39.1.5 (A:) Calcium vector protein {Amphioxus (B	4e-05
d1jc2a_	75	a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus)	1e-08
d1jc2a_	75	a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus)	3e-06
d1jc2a_	75	a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus)	0.002
d1jbaa_	189	a.39.1.5 (A:) Guanylate cyclase activating protein	1e-08
d1g8ia_	187	a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1	2e-08
d2pq3a1	73	a.39.1.5 (A:3-75) Calmodulin {Rattus norvegicus [T	2e-08
d2pq3a1	73	a.39.1.5 (A:3-75) Calmodulin {Rattus norvegicus [T	1e-06
d1qv0a_	189	a.39.1.5 (A:) Calcium-regulated photoprotein {Hydr	2e-08
d1f54a_	77	a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharom	3e-08
d1f54a_	77	a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharom	1e-05
d1fpwa_	190	a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1	1e-07
d1fpwa_	190	a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1	0.001
d1ggwa_	140	a.39.1.5 (A:) Cdc4p {Fission yeast (Schizosaccharo	1e-07
d1alva_	173	a.39.1.8 (A:) Calpain small (regulatory) subunit (	1e-07
d1alva_	173	a.39.1.8 (A:) Calpain small (regulatory) subunit (	3e-04
d1m45a_	146	a.39.1.5 (A:) Myosin Light Chain Mlc1p {Baker's ye	2e-07
d1avsa_	81	a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus)	3e-07
d1avsa_	81	a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus)	4e-05
d1avsa_	81	a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus)	3e-04
d1uhka1	187	a.39.1.5 (A:3-189) Calcium-regulated photoprotein	3e-07
d1tiza_	67	a.39.1.5 (A:) Calmodulin-related protein T21P5.17	5e-07
d1tiza_	67	a.39.1.5 (A:) Calmodulin-related protein T21P5.17	7e-04
d1xo5a_	180	a.39.1.5 (A:) Calcium- and integrin-binding protei	5e-07
d1qx2a_	76	a.39.1.1 (A:) Calbindin D9K {Cow (Bos taurus) [Tax	7e-07
d1qx2a_	76	a.39.1.1 (A:) Calbindin D9K {Cow (Bos taurus) [Tax	9e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1wdcb_	142	a.39.1.5 (B:) Myosin Essential Chain {Bay scallop	1e-06
d1cb1a_	78	a.39.1.1 (A:) Calbindin D9K {Pig (Sus scrofa) [Tax	2e-06
d1cb1a_	78	a.39.1.1 (A:) Calbindin D9K {Pig (Sus scrofa) [Tax	2e-05
d1nyaa_	176	a.39.1.5 (A:) Calerythrin {Saccharopolyspora eryth	5e-06
d1wdcc_	152	a.39.1.5 (C:) Myosin Regulatory Chain {Bay scallop	6e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	6e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003
d1omra_	201	a.39.1.5 (A:) Recoverin {Cow (Bos taurus) [TaxId:	8e-06
d1wrka1	82	a.39.1.5 (A:4-85) Troponin C {Human (Homo sapiens)	1e-05
d1wrka1	82	a.39.1.5 (A:4-85) Troponin C {Human (Homo sapiens)	9e-05
d2opoa1	81	a.39.1.10 (A:6-86) Polcalcin Che a 3 {Pigweed (Che	1e-05
d2opoa1	81	a.39.1.10 (A:6-86) Polcalcin Che a 3 {Pigweed (Che	4e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.001
d2sasa_	185	a.39.1.5 (A:) Sarcoplasmic calcium-binding protein	2e-05
d1wlza1	83	a.39.1.7 (A:229-311) DJ-1-binding protein, DJBP {H	3e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	4e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.001
d1xk4a1	87	a.39.1.2 (A:1-87) Calcyclin (S100) {Human (Homo sa	8e-05
d1xk4a1	87	a.39.1.2 (A:1-87) Calcyclin (S100) {Human (Homo sa	0.001
d2zfda1	183	a.39.1.5 (A:32-214) Calcineurin B-like protein 2 {	1e-04
d2zkmx1	170	a.39.1.7 (X:142-311) Phospholipase C-beta-2 {Human	1e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	3e-04
d1snla_	99	a.39.1.7 (A:) Nucleobindin 1 (CALNUC) {Human (Homo	3e-04
d1snla_	99	a.39.1.7 (A:) Nucleobindin 1 (CALNUC) {Human (Homo	0.003
d1s6ca_	178	a.39.1.5 (A:) Kchip1, Kv4 potassium channel-intera	4e-04
d1yuta1	98	a.39.1.2 (A:1-98) Calcyclin (S100) {Human (Homo sa	6e-04
d1yuta1	98	a.39.1.2 (A:1-98) Calcyclin (S100) {Human (Homo sa	7e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1fi6a_	92	a.39.1.6 (A:) Reps1 {Mouse (Mus musculus) [TaxId:	0.001
d3c1va1	93	a.39.1.2 (A:2-94) Calcyclin (S100) {Human (Homo sa	0.001
d2hf5a1	33	a.39.1.5 (A:81-113) Troponin C {Human (Homo sapien	0.001
d1zfsa1	93	a.39.1.2 (A:1-93) Calcyclin (S100) {Rat (Rattus no	0.002
d1zfsa1	93	a.39.1.2 (A:1-93) Calcyclin (S100) {Rat (Rattus no	0.003
d1c07a_	95	a.39.1.6 (A:) Eps15 {Human (Homo sapiens) [TaxId:	0.002

>d5pala_ a.39.1.4 (A:) Parvalbumin {Leopard shark (Triakis semifasciata) [TaxId: 30493]} Length = 109

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Leopard shark (Triakis semifasciata) [TaxId: 30493]

 Score = 72.3 bits (177), Expect = 3e-16
 Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 12/108 (11%)

Query: 328 KAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGT 387
           KA+DI  + + AFK       G   +  F  ++    K +    +V + F+  D  +SG 
Sbjct: 7   KADDI-NKAISAFKD-----PGTFDYKRFFHLVGLKGKTDA---QVKEVFEILDKDQSGF 57

Query: 388 VPAKYLKHVLVNW---GEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           +  + LK VL  +   G  L+  E   +    +   + K+  ++F K+
Sbjct: 58  IEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKIGADEFAKM 105

>d5pala_ a.39.1.4 (A:) Parvalbumin {Leopard shark (Triakis semifasciata) [TaxId: 30493]} Length = 109

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Leopard shark (Triakis semifasciata) [TaxId: 30493]

 Score = 36.5 bits (84), Expect = 0.001
 Identities = 16/100 (16%), Positives = 35/100 (35%), Gaps = 9/100 (9%)

Query: 267 EFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLA----EKGGKLSFPDFLKV 322
           +  +    F   GT         ++   G +   A++K+       ++ G +   +   V
Sbjct: 10  DINKAISAFKDPGTF-DYKRFFHLVGLKGKTD--AQVKEVFEILDKDQSGFIEEEELKGV 66

Query: 323 MHTHSKA--EDIPKEVVDAFKAADTTKSGKLSFPDFLKVM 360
           +   S    +    E      A D+   GK+   +F K++
Sbjct: 67  LKGFSAHGRDLNDTETKALLAAGDSDHDGKIGADEFAKMV 106

>d2obha1 a.39.1.5 (A:26-166) Calmodulin {Human (Homo sapiens) [TaxId: 9606]} Length = 141

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.4 bits (171), Expect = 3e-15
 Identities = 48/167 (28%), Positives = 74/167 (44%), Gaps = 34/167 (20%)

Query: 267 EFRECFFLFARNGTIK-TLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHT 325
           E RE F LF  +GT    + EL V MR+LG  P   E+KK                    
Sbjct: 7   EIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKM------------------- 47

Query: 326 HSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKS 385
                             D   +GK++F DFL VM      +D  +E++ AFK  D  ++
Sbjct: 48  --------------ISEIDKEGTGKMNFGDFLTVMTQKMSEKDTKEEILKAFKLFDDDET 93

Query: 386 GTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           G +  K LK V    GE L+ +E+ ++  EA+   + +V  ++F++I
Sbjct: 94  GKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQEFLRI 140

>d2obha1 a.39.1.5 (A:26-166) Calmodulin {Human (Homo sapiens) [TaxId: 9606]} Length = 141

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 5e-04
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 5/67 (7%)

Query: 262 KTPYLEFRECFFLFARNGT-IKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLSF 316
           K    E  + F LF  + T   +   L  + + LG + T  EL++ + E      G++S 
Sbjct: 75  KDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSE 134

Query: 317 PDFLKVM 323
            +FL++M
Sbjct: 135 QEFLRIM 141

>d1pvaa_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]} Length = 109

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Pike (Esox lucius) [TaxId: 8010]

 Score = 68.8 bits (168), Expect = 4e-15
 Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 12/108 (11%)

Query: 328 KAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGT 387
           KA+DI K+ +DA KA      G  +   F  ++   + + +   +V   FKA D   SG 
Sbjct: 7   KADDI-KKALDAVKA-----EGSFNHKKFFALVGLKAMSAN---DVKKVFKAIDADASGF 57

Query: 388 VPAKYLKHVLVNW---GEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           +  + LK VL ++   G  L+  E     + A+   + K+  ++F  +
Sbjct: 58  IEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKIGIDEFETL 105

>d1pvaa_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]} Length = 109

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Pike (Esox lucius) [TaxId: 8010]

 Score = 49.5 bits (118), Expect = 2e-08
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 7/92 (7%)

Query: 301 AELKKYLAE--KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLK 358
            ++KK L      G  +   F  ++   + + +   +V   FKA D   SG +   +   
Sbjct: 9   DDIKKALDAVKAEGSFNHKKFFALVGLKAMSAN---DVKKVFKAIDADASGFIEEEELKF 65

Query: 359 VMHTHSKA--EDIPKEVVDAFKAADTTKSGTV 388
           V+ + +    +    E     KAAD    G +
Sbjct: 66  VLKSFAADGRDLTDAETKAFLKAADKDGDGKI 97

>d1pvaa_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]} Length = 109

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Pike (Esox lucius) [TaxId: 8010]

 Score = 36.8 bits (85), Expect = 7e-04
 Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 9/93 (9%)

Query: 275 FARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFLKVMHTHSKA- 329
               G+     +   ++    MS    ++KK          G +   +   V+ + +   
Sbjct: 18  VKAEGSF-NHKKFFALVGLKAMSA--NDVKKVFKAIDADASGFIEEEELKFVLKSFAADG 74

Query: 330 -EDIPKEVVDAFKAADTTKSGKLSFPDFLKVMH 361
            +    E     KAAD    GK+   +F  ++H
Sbjct: 75  RDLTDAETKAFLKAADKDGDGKIGIDEFETLVH 107

>d1exra_ a.39.1.5 (A:) Calmodulin {Ciliate (Paramecium tetraurelia) [TaxId: 5888]} Length = 146

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Ciliate (Paramecium tetraurelia) [TaxId: 5888]

 Score = 66.5 bits (161), Expect = 7e-14
 Identities = 42/137 (30%), Positives = 74/137 (54%), Gaps = 5/137 (3%)

Query: 300 IAELKK----YLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPD 355
           IAE K+    +  +  G ++  +   VM +  +      E+ D     D   +G + FP+
Sbjct: 8   IAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPT-EAELQDMINEVDADGNGTIDFPE 66

Query: 356 FLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFRE 415
           FL +M    K +D  +E+++AFK  D   +G + A  L+HV+ N GE L+  EVD++ RE
Sbjct: 67  FLSLMARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIRE 126

Query: 416 ANVTMNSKVRYEDFVKI 432
           A++  +  + YE+FV++
Sbjct: 127 ADIDGDGHINYEEFVRM 143

>d1w7jb1 a.39.1.5 (B:11-149) Myosin Essential Chain {Human (Homo sapiens) [TaxId: 9606]} Length = 139

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Essential Chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.3 bits (158), Expect = 1e-13
 Identities = 36/167 (21%), Positives = 61/167 (36%), Gaps = 31/167 (18%)

Query: 267 EFRECFFLFARNGTIK-TLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHT 325
           EF+E F LF R G  K    +   +MR+LG +PT AE+ K L            +     
Sbjct: 1   EFKEAFELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELKSRRVDFETF 60

Query: 326 HSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKS 385
                                                 ++ +   ++ ++ F+  D   +
Sbjct: 61  LPM-----------------------------LQAVAKNRGQGTYEDYLEGFRVFDKEGN 91

Query: 386 GTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           G V    L+HVL   GE ++ +EV+ +    +   N  + YE F+K 
Sbjct: 92  GKVMGAELRHVLTTLGEKMTEEEVETVL-AGHEDSNGCINYEAFLKH 137

>d1rwya_ a.39.1.4 (A:) Parvalbumin {Rat (Rattus rattus) [TaxId: 10117]} Length = 109

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 63.1 bits (153), Expect = 4e-13
 Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 12/108 (11%)

Query: 328 KAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGT 387
            AEDI K+ + AF AAD+          F +++    K+ D   +V   F   D  KSG 
Sbjct: 7   SAEDI-KKAIGAFTAADS-----FDHKKFFQMVGLKKKSAD---DVKKVFHILDKDKSGF 57

Query: 388 VPAKYLKHVLVN---WGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           +    L  +L         LS+KE   +    +   + K+  E+F  +
Sbjct: 58  IEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVEEFSTL 105

>d1rwya_ a.39.1.4 (A:) Parvalbumin {Rat (Rattus rattus) [TaxId: 10117]} Length = 109

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 35.0 bits (80), Expect = 0.003
 Identities = 14/93 (15%), Positives = 31/93 (33%), Gaps = 9/93 (9%)

Query: 275 FARNGTIKTLDELSVIMRSLGMSPTIAELKKYLA----EKGGKLSFPDFLKVMHT-HSKA 329
           F    +     +   ++     S    ++KK       +K G +   +   ++    S A
Sbjct: 18  FTAADSFD-HKKFFQMVGLKKKSA--DDVKKVFHILDKDKSGFIEEDELGSILKGFSSDA 74

Query: 330 EDIPKEVVDA-FKAADTTKSGKLSFPDFLKVMH 361
            D+  +       A D    GK+   +F  ++ 
Sbjct: 75  RDLSAKETKTLMAAGDKDGDGKIGVEEFSTLVA 107

>d2pvba_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]} Length = 107

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Pike (Esox lucius) [TaxId: 8010]

 Score = 61.1 bits (148), Expect = 2e-12
 Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 12/108 (11%)

Query: 328 KAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGT 387
           K  D+    + A  AAD+         +F   +   SK+ D   +V  AF   D  KSG 
Sbjct: 6   KDADV-AAALAACSAADS-----FKHKEFFAKVGLASKSLD---DVKKAFYVIDQDKSGF 56

Query: 388 VPAKYLKHVLVN---WGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           +    LK  L N       L+  E      + +   +  +  ++F  +
Sbjct: 57  IEEDELKLFLQNFSPSARALTDAETKAFLADGDKDGDGMIGVDEFAAM 104

>d1rroa_ a.39.1.4 (A:) Oncomodulin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 108

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Oncomodulin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 60.3 bits (146), Expect = 4e-12
 Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 12/108 (11%)

Query: 328 KAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGT 387
            AEDI    +   +  DT          F +       +     +V D F+  D  +SG 
Sbjct: 7   SAEDI-AAALQECQDPDT-----FEPQKFFQTSGLSKMSAS---QVKDIFRFIDNDQSGY 57

Query: 388 VPAKYLKHVLVNW---GEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           +    LK+ L  +      L+  E   +   A+   + K+  ++F ++
Sbjct: 58  LDGDELKYFLQKFQSDARELTESETKSLMDAADNDGDGKIGADEFQEM 105

>d1rroa_ a.39.1.4 (A:) Oncomodulin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 108

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Oncomodulin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.3 bits (107), Expect = 7e-07
 Identities = 16/92 (17%), Positives = 26/92 (28%), Gaps = 7/92 (7%)

Query: 301 AELKKYLAE--KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLK 358
            ++   L E           F +       +     +V D F+  D  +SG L   +   
Sbjct: 9   EDIAAALQECQDPDTFEPQKFFQTSGLSKMSAS---QVKDIFRFIDNDQSGYLDGDELKY 65

Query: 359 VMHTH--SKAEDIPKEVVDAFKAADTTKSGTV 388
            +        E    E      AAD    G +
Sbjct: 66  FLQKFQSDARELTESETKSLMDAADNDGDGKI 97

>d1rroa_ a.39.1.4 (A:) Oncomodulin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 108

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Oncomodulin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.3 bits (81), Expect = 0.002
 Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 2/56 (3%)

Query: 309 EKGGKLSFPDFLKVMHTH--SKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHT 362
           ++ G L   +    +        E    E      AAD    GK+   +F +++H+
Sbjct: 53  DQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAADNDGDGKIGADEFQEMVHS 108

>d1lkja_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 146

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.4 bits (148), Expect = 5e-12
 Identities = 39/137 (28%), Positives = 66/137 (48%), Gaps = 6/137 (4%)

Query: 300 IAELKK----YLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPD 355
           IAE K+    +  +  G +S  +   VM +   +     EV D     D   + ++ F +
Sbjct: 9   IAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPS-EAEVNDLMNEIDVDGNHQIEFSE 67

Query: 356 FLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFRE 415
           FL +M    K+ D  +E+++AFK  D    G + A  LKHVL + GE L+  EVD + RE
Sbjct: 68  FLALMSRQLKSNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDDMLRE 127

Query: 416 ANVTMNSKVRYEDFVKI 432
            +   + ++  + F  +
Sbjct: 128 VS-DGSGEINIQQFAAL 143

>d1topa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Length = 162

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 59.9 bits (144), Expect = 2e-11
 Identities = 28/140 (20%), Positives = 65/140 (46%), Gaps = 8/140 (5%)

Query: 300 IAELKK----YLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPD 355
           IAE K     + A+ GG +S  +   VM    +     +E+    +  D   SG + F +
Sbjct: 19  IAEFKAAFDMFDADGGGDISTKELGTVMRMLGQ-NPTKEELDAIIEEVDEDGSGTIDFEE 77

Query: 356 FLKVMHTHS---KAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQI 412
           FL +M             +E+ + F+  D    G +  + L  +L   GE ++ ++++ +
Sbjct: 78  FLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDL 137

Query: 413 FREANVTMNSKVRYEDFVKI 432
            ++++   + ++ +++F+K+
Sbjct: 138 MKDSDKNNDGRIDFDEFLKM 157

>d1topa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Length = 162

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 35.7 bits (81), Expect = 0.004
 Identities = 10/59 (16%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 303 LKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMH 361
            + +     G +   +  +++    +     +++ D  K +D    G++ F +FLK+M 
Sbjct: 102 FRIFDKNADGFIDIEELGEILRATGEHVT-EEDIEDLMKDSDKNNDGRIDFDEFLKMME 159

>d1dtla_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Length = 156

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 59.6 bits (143), Expect = 2e-11
 Identities = 30/168 (17%), Positives = 62/168 (36%), Gaps = 32/168 (19%)

Query: 267 EFRECFFLFARNGTIKTLD--ELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
           EF+  F +F       ++   EL  +MR LG +PT  EL++                   
Sbjct: 15  EFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQE------------------M 56

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 384
                ED    V                F   +             +E+ D F+  D   
Sbjct: 57  IDEVDEDGSGTVDFDE------------FLVMMVRSMKDDSKGKSEEELSDLFRMFDKNA 104

Query: 385 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
            G +  + LK +L   GE ++  +++++ ++ +   + ++ Y++F++ 
Sbjct: 105 DGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEF 152

>d1juoa_ a.39.1.8 (A:) Sorcin {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Sorcin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (141), Expect = 6e-11
 Identities = 29/167 (17%), Positives = 52/167 (31%), Gaps = 39/167 (23%)

Query: 267 EFRECFFLFA-RNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHT 325
                F   A ++G I   DEL   +   G++                            
Sbjct: 8   PLYGYFAAVAGQDGQI-DADELQRCLTQSGIAGGYKPFNL-------------------- 46

Query: 326 HSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKS 385
                   +         D   SG + F +F ++    +                DT +S
Sbjct: 47  --------ETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISF-------DTDRS 91

Query: 386 GTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           GTV  + L+  L   G  LS + V+ I +  +   N K+ ++D++  
Sbjct: 92  GTVDPQELQKALTTMGFRLSPQAVNSIAKRYS--TNGKITFDDYIAC 136

>d1bjfa_ a.39.1.5 (A:) Neurocalcin {Cow (Bos taurus) [TaxId: 9913]} Length = 181

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Neurocalcin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.9 bits (139), Expect = 2e-10
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 16/164 (9%)

Query: 285 DELSVIMRSLGMSPT-IAELKKYLAEK--GGKLSFPDFLKVMHTHSKAEDIPKEVVDAFK 341
           + +  ++ S   +   I E  K        G LS  +F K+        D  K     F+
Sbjct: 7   EVMQDLLESTDFTEHEIQEWYKGFLRDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFR 66

Query: 342 AADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW- 400
             D    G + F +F+  +   S+ +   K +  AF   D   +G +    +  ++    
Sbjct: 67  TFDANGDGTIDFREFIIALSVTSRGKLEQK-LKWAFSMYDLDGNGYISKAEMLEIVQAIY 125

Query: 401 -----------GEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA 433
                       E    K  ++IFR+ +   + K+  E+F++ A
Sbjct: 126 KMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEEFIRGA 169

>d1bjfa_ a.39.1.5 (A:) Neurocalcin {Cow (Bos taurus) [TaxId: 9913]} Length = 181

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Neurocalcin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.8 bits (92), Expect = 2e-04
 Identities = 20/149 (13%), Positives = 47/149 (31%), Gaps = 53/149 (35%)

Query: 267 EFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYL-----AEKGGKLSFPDFLK 321
           E+ + F     +G + +++E   I  +       ++  +++     A   G + F +F+ 
Sbjct: 25  EWYKGFLRDCPSGHL-SMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFII 83

Query: 322 VMHTHSKA----------------------------------------------EDIPKE 335
            +   S+                                               E  P++
Sbjct: 84  ALSVTSRGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEK 143

Query: 336 VVDA-FKAADTTKSGKLSFPDFLKVMHTH 363
             +  F+  DT + GKLS  +F++   + 
Sbjct: 144 RTEKIFRQMDTNRDGKLSLEEFIRGAKSD 172

>d1ij5a_ a.39.1.9 (A:) Cbp40 (plasmodial specific CaII-binding protein LAV1-2) {Physarum polycephalum [TaxId: 5791]} Length = 321

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Cbp40 (plasmodial specific CaII-binding protein LAV1-2)
domain: Cbp40 (plasmodial specific CaII-binding protein LAV1-2)
species: Physarum polycephalum [TaxId: 5791]

 Score = 58.9 bits (141), Expect = 3e-10
 Identities = 24/193 (12%), Positives = 54/193 (27%), Gaps = 27/193 (13%)

Query: 267 EFRECFFLFARNGTIK-TLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHT 325
             R+ F   A +G+ K +  +L  ++     +     LKK                 +  
Sbjct: 123 ILRQLFLSSAVSGSGKFSFQDLKQVLAKYADTIPEGPLKKLFVMVENDTKGRMSYITLVA 182

Query: 326 HSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAED----------------- 368
            +                      +  F +    +    K+                   
Sbjct: 183 VANDLAALVADFRKIDTNSNGTLSRKEFREHFVRLGFDKKSVQDALFRYADEDESDDVGF 242

Query: 369 --------IPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWG-EGLSSKEVDQIFREANVT 419
                       +   +  AD  KSG +  + ++ VL +      + K+ +  F   +V 
Sbjct: 243 SEYVHLGLCLLVLRILYAFADFDKSGQLSKEEVQKVLEDAHIPESARKKFEHQFSVVDVD 302

Query: 420 MNSKVRYEDFVKI 432
            +  + Y++FV +
Sbjct: 303 DSKSLSYQEFVML 315

>d1ij5a_ a.39.1.9 (A:) Cbp40 (plasmodial specific CaII-binding protein LAV1-2) {Physarum polycephalum [TaxId: 5791]} Length = 321

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Cbp40 (plasmodial specific CaII-binding protein LAV1-2)
domain: Cbp40 (plasmodial specific CaII-binding protein LAV1-2)
species: Physarum polycephalum [TaxId: 5791]

 Score = 43.8 bits (102), Expect = 2e-05
 Identities = 26/172 (15%), Positives = 47/172 (27%), Gaps = 1/172 (0%)

Query: 189 EVLRKQKKLHQPSRLQDLAVQSVIASKENFFEPGLFPGPLVDYIAREYNQYHVCHYCNSA 248
           +VL K         L+ L    V    +             D  A   +   +    N  
Sbjct: 146 QVLAKYADTIPEGPLKKL-FVMVENDTKGRMSYITLVAVANDLAALVADFRKIDTNSNGT 204

Query: 249 EPLDRSGYKVFTFKTPYLEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLA 308
                               ++  F +A       +     +   L +            
Sbjct: 205 LSRKEFREHFVRLGFDKKSVQDALFRYADEDESDDVGFSEYVHLGLCLLVLRILYAFADF 264

Query: 309 EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVM 360
           +K G+LS  +  KV+      E   K+    F   D   S  LS+ +F+ ++
Sbjct: 265 DKSGQLSKEEVQKVLEDAHIPESARKKFEHQFSVVDVDDSKSLSYQEFVMLV 316

>d1ij5a_ a.39.1.9 (A:) Cbp40 (plasmodial specific CaII-binding protein LAV1-2) {Physarum polycephalum [TaxId: 5791]} Length = 321

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Cbp40 (plasmodial specific CaII-binding protein LAV1-2)
domain: Cbp40 (plasmodial specific CaII-binding protein LAV1-2)
species: Physarum polycephalum [TaxId: 5791]

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 1/90 (1%)

Query: 352 SFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQ 411
           S  + L+        ED    +   F ++  + SG    + LK VL  + + +    + +
Sbjct: 104 SGYNRLRPSKPMLSEEDT-NILRQLFLSSAVSGSGKFSFQDLKQVLAKYADTIPEGPLKK 162

Query: 412 IFREANVTMNSKVRYEDFVKIACAPVPDYY 441
           +F         ++ Y   V +A        
Sbjct: 163 LFVMVENDTKGRMSYITLVAVANDLAALVA 192

>d1qxpa2 a.39.1.8 (A:515-702) Calpain large subunit, C-terminal domain (domain IV) {Rat (Rattus norvegicus), mu-type [TaxId: 10116]} Length = 188

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Calpain large subunit, C-terminal domain (domain IV)
species: Rat (Rattus norvegicus), mu-type [TaxId: 10116]

 Score = 57.0 bits (137), Expect = 3e-10
 Identities = 24/166 (14%), Positives = 49/166 (29%), Gaps = 33/166 (19%)

Query: 267 EFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTH 326
            F+  F   A +    ++ EL  I+  +           +  E                 
Sbjct: 21  NFKTLFSKLAGDDMEISVKELQTILNRIISKHKDLRTNGFSLE----------------- 63

Query: 327 SKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSG 386
                            D   +GKL   +F  + +       I       F+  D  KSG
Sbjct: 64  --------SCRSMVNLMDRDGNGKLGLVEFNILWNRIRNYLTI-------FRKFDLDKSG 108

Query: 387 TVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           ++ A  ++  +   G  L   ++ Q+           + +++FV+ 
Sbjct: 109 SMSAYEMRMAIEAAGFKL-PCQLHQVIVARFADDELIIDFDNFVRC 153

>d1qxpa2 a.39.1.8 (A:515-702) Calpain large subunit, C-terminal domain (domain IV) {Rat (Rattus norvegicus), mu-type [TaxId: 10116]} Length = 188

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Calpain large subunit, C-terminal domain (domain IV)
species: Rat (Rattus norvegicus), mu-type [TaxId: 10116]

 Score = 47.8 bits (113), Expect = 4e-07
 Identities = 21/141 (14%), Positives = 48/141 (34%), Gaps = 13/141 (9%)

Query: 251 LDRSGYKVFTFKTPYLEFRECFFLFA---RNGTIKTLDELSVIMRSLGMSPTIAELKKYL 307
           L+R   K    +T       C  +     R+G    L  +   +    +   +   +K+ 
Sbjct: 45  LNRIISKHKDLRTNGFSLESCRSMVNLMDRDGN-GKLGLVEFNILWNRIRNYLTIFRKFD 103

Query: 308 AEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAE 367
            +K G +S  +    +   +    +P ++     A        + F +F++ +       
Sbjct: 104 LDKSGSMSAYEMRMAIE--AAGFKLPCQLHQVIVARFADDELIIDFDNFVRCLVRL---- 157

Query: 368 DIPKEVVDAFKAADTTKSGTV 388
              + +   FK  D   +GT+
Sbjct: 158 ---EILFKIFKQLDPENTGTI 175

>d1qxpa2 a.39.1.8 (A:515-702) Calpain large subunit, C-terminal domain (domain IV) {Rat (Rattus norvegicus), mu-type [TaxId: 10116]} Length = 188

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Calpain large subunit, C-terminal domain (domain IV)
species: Rat (Rattus norvegicus), mu-type [TaxId: 10116]

 Score = 42.4 bits (99), Expect = 3e-05
 Identities = 14/115 (12%), Positives = 37/115 (32%), Gaps = 13/115 (11%)

Query: 251 LDRSGYKVFTFKTPYLEFRECFFLFARNGTIKTLDELSVIMRSLGMSPT---IAELKKYL 307
           L    + +   +          F   ++G++ +  E+ + + + G          +    
Sbjct: 80  LGLVEFNILWNRIRNYLTIFRKFDLDKSGSM-SAYEMRMAIEAAGFKLPCQLHQVIVARF 138

Query: 308 AEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGK--LSFPDFLKVM 360
           A+    + F +F++ +          + +   FK  D   +G   L    +L   
Sbjct: 139 ADDELIIDFDNFVRCLVRL-------EILFKIFKQLDPENTGTIQLDLISWLSFS 186

>d1oqpa_ a.39.1.5 (A:) Caltractin (centrin 2) {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 77

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Caltractin (centrin 2)
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 54.1 bits (130), Expect = 3e-10
 Identities = 19/66 (28%), Positives = 39/66 (59%)

Query: 367 EDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRY 426
            D  +E++ AF+  D   SGT+  K L+ V    GE L+ +E+ ++  EA+   ++++  
Sbjct: 5   RDSREEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDE 64

Query: 427 EDFVKI 432
           ++F++I
Sbjct: 65  DEFIRI 70

>d1oqpa_ a.39.1.5 (A:) Caltractin (centrin 2) {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 77

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Caltractin (centrin 2)
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 43.3 bits (102), Expect = 2e-06
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 7/67 (10%)

Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFL 320
           E  + F LF  +  GTI T+ +L  + + LG + T  EL++ +AE       ++   +F+
Sbjct: 10  EILKAFRLFDDDNSGTI-TIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDEDEFI 68

Query: 321 KVMHTHS 327
           ++M   S
Sbjct: 69  RIMKKTS 75

>d1s6ja_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD {Soybean (Glycine max) [TaxId: 3847]} Length = 87

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-dependent protein kinase sk5 CLD
species: Soybean (Glycine max) [TaxId: 3847]

 Score = 53.8 bits (129), Expect = 4e-10
 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 3/86 (3%)

Query: 347 KSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSS 406
            SG +   D  K M      E+I   + + FK  DT  SGT+    LK  L   G  L  
Sbjct: 2   SSGHIDDDD--KHMAERLSEEEI-GGLKELFKMIDTDNSGTITFDELKDGLKRVGSELME 58

Query: 407 KEVDQIFREANVTMNSKVRYEDFVKI 432
            E+  +   A++  +  + Y +F+  
Sbjct: 59  SEIKDLMDAADIDKSGTIDYGEFIAA 84

>d1s6ja_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD {Soybean (Glycine max) [TaxId: 3847]} Length = 87

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-dependent protein kinase sk5 CLD
species: Soybean (Glycine max) [TaxId: 3847]

 Score = 36.9 bits (85), Expect = 5e-04
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 4/77 (5%)

Query: 312 GKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPK 371
           G +   D  K M      E+I   + + FK  DT  SG ++F +    +      E +  
Sbjct: 4   GHIDDDD--KHMAERLSEEEI-GGLKELFKMIDTDNSGTITFDELKDGLKRVGS-ELMES 59

Query: 372 EVVDAFKAADTTKSGTV 388
           E+ D   AAD  KSGT+
Sbjct: 60  EIKDLMDAADIDKSGTI 76

>d1s6ja_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD {Soybean (Glycine max) [TaxId: 3847]} Length = 87

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-dependent protein kinase sk5 CLD
species: Soybean (Glycine max) [TaxId: 3847]

 Score = 34.5 bits (79), Expect = 0.003
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 5/65 (7%)

Query: 300 IAELKK----YLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPD 355
           I  LK+       +  G ++F +    +      E +  E+ D   AAD  KSG + + +
Sbjct: 22  IGGLKELFKMIDTDNSGTITFDELKDGLKRVGS-ELMESEIKDLMDAADIDKSGTIDYGE 80

Query: 356 FLKVM 360
           F+   
Sbjct: 81  FIAAT 85

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 58.3 bits (139), Expect = 5e-10
 Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 8/104 (7%)

Query: 51  CSHIWIPQYFSHAFLLSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLC 110
                + +   + + L+ S   I        ++E L++ +N L  LP        L  L 
Sbjct: 254 NIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPP---RLERLI 310

Query: 111 LTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQL 154
            + N L    +P      +NL  L+++ N L   P    S+  L
Sbjct: 311 ASFNHLA--EVP---ELPQNLKQLHVEYNPLREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.2 bits (105), Expect = 8e-06
 Identities = 25/111 (22%), Positives = 39/111 (35%), Gaps = 12/111 (10%)

Query: 75  RRIFKC--DTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLT 132
            R+  C       L L +  L+SLP       +L  L  + N L    +P      ++L 
Sbjct: 30  SRLRDCLDRQAHELELNNLGLSSLPELPP---HLESLVASCNSLT--ELP---ELPQSLK 81

Query: 133 HLYLDNNLLDALPGF--LLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARI 181
            L +DNN L AL     LL    +             S+F+      +  +
Sbjct: 82  SLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSL 132

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.8 bits (91), Expect = 4e-04
 Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 5/53 (9%)

Query: 103 LTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLD 155
             +L  L +++N L    +P        L  L    N L  +P    ++ QL 
Sbjct: 283 PPSLEELNVSNNKLI--ELPALPP---RLERLIASFNHLAEVPELPQNLKQLH 330

>d1k94a_ a.39.1.8 (A:) Grancalcin {Human (Homo sapiens) [TaxId: 9606]} Length = 165

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Grancalcin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (133), Expect = 7e-10
 Identities = 24/156 (15%), Positives = 51/156 (32%), Gaps = 38/156 (24%)

Query: 277 RNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEV 336
           ++G +   +EL   +   G++ T +                                +  
Sbjct: 12  QDGEV-DAEELQRCLTQSGINGTYSPFS----------------------------LETC 42

Query: 337 VDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHV 396
                  D   +GK+ F  F ++    +  ++        F   D   SGTV    L+  
Sbjct: 43  RIMIAMLDRDHTGKMGFNAFKELWAALNAWKEN-------FMTVDQDGSGTVEHHELRQA 95

Query: 397 LVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           +   G  LS + +  I +  +   N ++ ++D+V  
Sbjct: 96  IGLMGYRLSPQTLTTIVKRYSK--NGRIFFDDYVAC 129

>d1df0a1 a.39.1.8 (A:515-700) Calpain large subunit, C-terminal domain (domain IV) {Rat (Rattus norvegicus), M-type [TaxId: 10116]} Length = 186

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Calpain large subunit, C-terminal domain (domain IV)
species: Rat (Rattus norvegicus), M-type [TaxId: 10116]

 Score = 55.6 bits (133), Expect = 9e-10
 Identities = 25/167 (14%), Positives = 51/167 (30%), Gaps = 35/167 (20%)

Query: 267 EFRECFFLFA-RNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHT 325
            FR  F   A  +  I +  EL  I+R +       +   +                   
Sbjct: 19  GFRRLFAQLAGEDAEI-SAFELQTILRRVLAKREDIKSDGF------------------- 58

Query: 326 HSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKS 385
                   +         D   SGKL   +F  +           ++    ++  D  +S
Sbjct: 59  ------SIETCKIMVDMLDEDGSGKLGLKEFYILWTKI-------QKYQKIYREIDVDRS 105

Query: 386 GTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           GT+ +  ++  L   G  L   ++ Q+           + +++FV+ 
Sbjct: 106 GTMNSYEMRKALEEAGFKL-PCQLHQVIVARFADDELIIDFDNFVRC 151

>d1df0a1 a.39.1.8 (A:515-700) Calpain large subunit, C-terminal domain (domain IV) {Rat (Rattus norvegicus), M-type [TaxId: 10116]} Length = 186

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Calpain large subunit, C-terminal domain (domain IV)
species: Rat (Rattus norvegicus), M-type [TaxId: 10116]

 Score = 39.4 bits (91), Expect = 3e-04
 Identities = 16/114 (14%), Positives = 35/114 (30%), Gaps = 13/114 (11%)

Query: 251 LDRSGYKVFTFKTPYLEFRECFFLFARNGTIKTLDELSVIMRSLGMSPT---IAELKKYL 307
           L    + +   K    +         R+GT+ +  E+   +   G          +    
Sbjct: 78  LGLKEFYILWTKIQKYQKIYREIDVDRSGTMNS-YEMRKALEEAGFKLPCQLHQVIVARF 136

Query: 308 AEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGK--LSFPDFLKV 359
           A+    + F +F++ +          + +   FK  D   +G   L    +L  
Sbjct: 137 ADDELIIDFDNFVRCLVRL-------EILFKIFKQLDPENTGTIQLDLISWLSF 183

>d2fcea1 a.39.1.5 (A:84-144) Calmodulin {Cow (Bos taurus) [TaxId: 9913]} Length = 61

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.0 bits (124), Expect = 1e-09
 Identities = 18/60 (30%), Positives = 33/60 (55%)

Query: 372 EVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVK 431
           + V AF+  D   +G V    L+++L   GE L+  EVD++ +   V  N ++ Y+ F++
Sbjct: 2   DFVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDYKKFIE 61

>d2fcea1 a.39.1.5 (A:84-144) Calmodulin {Cow (Bos taurus) [TaxId: 9913]} Length = 61

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 34.6 bits (79), Expect = 0.002
 Identities = 13/60 (21%), Positives = 29/60 (48%), Gaps = 5/60 (8%)

Query: 267 EFRECFFLFARNGT-IKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFLK 321
           +F + F +F +  T   ++ +L  ++  LG   T AE+ + L        G++ +  F++
Sbjct: 2   DFVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDYKKFIE 61

>d1fw4a_ a.39.1.5 (A:) Calmodulin {Cow (Bos taurus) [TaxId: 9913]} Length = 65

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.3 bits (125), Expect = 1e-09
 Identities = 24/61 (39%), Positives = 42/61 (68%)

Query: 372 EVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVK 431
           E+ +AF+  D   +G + A  L+HV+ N GE L+ +EVD++ REA++  + +V YE+FV+
Sbjct: 4   EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQ 63

Query: 432 I 432
           +
Sbjct: 64  M 64

>d1fw4a_ a.39.1.5 (A:) Calmodulin {Cow (Bos taurus) [TaxId: 9913]} Length = 65

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.6 bits (92), Expect = 3e-05
 Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 5/62 (8%)

Query: 267 EFRECFFLFARNGTIK-TLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFLK 321
           E RE F +F ++G    +  EL  +M +LG   T  E+ + + E      G++++ +F++
Sbjct: 4   EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQ 63

Query: 322 VM 323
           +M
Sbjct: 64  MM 65

>d1fw4a_ a.39.1.5 (A:) Calmodulin {Cow (Bos taurus) [TaxId: 9913]} Length = 65

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 35.0 bits (80), Expect = 0.001
 Identities = 11/57 (19%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 304 KKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVM 360
           + +  +  G +S    L+ + T+   +   +EV +  + AD    G++++ +F+++M
Sbjct: 10  RVFDKDGNGYISA-AELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 65

>d1fi5a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]} Length = 81

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]

 Score = 51.9 bits (124), Expect = 2e-09
 Identities = 15/76 (19%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 357 LKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREA 416
           ++ M   SK     +E+ D F+  D    G +  + LK +L   GE ++  +++++ ++ 
Sbjct: 2   VRCMKDDSK-GKTEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDG 60

Query: 417 NVTMNSKVRYEDFVKI 432
           +   + ++ Y++F++ 
Sbjct: 61  DKNNDGRIDYDEFLEF 76

>d1fi5a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]} Length = 81

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]

 Score = 37.2 bits (86), Expect = 3e-04
 Identities = 10/57 (17%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 304 KKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVM 360
           + +     G +   + LK+M   +       ++ +  K  D    G++ + +FL+ M
Sbjct: 22  RMFDKNADGYIDL-EELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 77

>d1fi5a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]} Length = 81

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]

 Score = 36.5 bits (84), Expect = 6e-04
 Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 2/69 (2%)

Query: 320 LKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKA 379
           ++ M   SK     +E+ D F+  D    G +   + LK+M   +       ++ +  K 
Sbjct: 2   VRCMKDDSK-GKTEEELSDLFRMFDKNADGYIDL-EELKIMLQATGETITEDDIEELMKD 59

Query: 380 ADTTKSGTV 388
            D    G +
Sbjct: 60  GDKNNDGRI 68

>d1fi5a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]} Length = 81

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]

 Score = 36.5 bits (84), Expect = 6e-04
 Identities = 13/62 (20%), Positives = 34/62 (54%), Gaps = 5/62 (8%)

Query: 267 EFRECFFLFARNGTIK-TLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFLK 321
           E  + F +F +N      L+EL +++++ G + T  ++++ + +      G++ + +FL+
Sbjct: 16  ELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLE 75

Query: 322 VM 323
            M
Sbjct: 76  FM 77

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.4 bits (132), Expect = 3e-09
 Identities = 26/98 (26%), Positives = 37/98 (37%), Gaps = 2/98 (2%)

Query: 82  TVEVLSLKSNSLTSLPP-DIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNL 140
              +L L++N +T +   D   L NL  L L +N +     P        L  LYL  N 
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK-ISPGAFAPLVKLERLYLSKNQ 90

Query: 141 LDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIH 178
           L  LP  +    Q   V+ +      KS F   +  I 
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIV 128

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 19/140 (13%), Positives = 41/140 (29%), Gaps = 5/140 (3%)

Query: 36  QTACQRNCSLEVGGICSHIWIPQYFSHAFLLSLSYTPIGRRIFKCDTVEVLSLKSNSLTS 95
           +        L+         + +   H   ++     +   + +   VE+ +    S   
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 141

Query: 96  LPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNN-LLDALPGFLLSMPQL 154
                  +  L  + + D  +   +IP  L    +LT L+LD N +       L  +  L
Sbjct: 142 ENGAFQGMKKLSYIRIADTNIT--TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNL 197

Query: 155 DTVYRHGNHNYFKSTFMWYH 174
             +    N           +
Sbjct: 198 AKLGLSFNSISAVDNGSLAN 217

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 11/97 (11%), Positives = 31/97 (31%), Gaps = 8/97 (8%)

Query: 48  GGICSHIWIPQYFSHAFLLSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPD-------I 100
                 +    +     L +     +   +     ++V+ L +N+++++  +        
Sbjct: 209 AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN 268

Query: 101 GRLTNLRVLCLTDNCLQNASI-PFTLTFCKNLTHLYL 136
            +  +   + L  N +Q   I P T         + L
Sbjct: 269 TKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 55.4 bits (132), Expect = 5e-09
 Identities = 16/85 (18%), Positives = 36/85 (42%), Gaps = 5/85 (5%)

Query: 78  FKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLD 137
                +  L+L  N+++ + P +  LT L+ L   +N +   S   +L    N+  L   
Sbjct: 304 SNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKV---SDVSSLANLTNINWLSAG 359

Query: 138 NNLLDALPGFLLSMPQLDTVYRHGN 162
           +N +  L   L ++ ++  +  +  
Sbjct: 360 HNQISDLTP-LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 52.7 bits (125), Expect = 4e-08
 Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 6/91 (6%)

Query: 51  CSHIWIPQYFSHAFLLSLSYTPIGRRIF--KCDTVEVLSLKSNSLTSLPPDIGRLTNLRV 108
              I       +   L+L +  I           ++ L   +N ++     +  LTN+  
Sbjct: 297 LEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSD-VSSLANLTNINW 355

Query: 109 LCLTDNCLQNASIPFTLTFCKNLTHLYLDNN 139
           L    N + +   P  L     +T L L++ 
Sbjct: 356 LSAGHNQISD-LTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 7e-05
 Identities = 22/97 (22%), Positives = 34/97 (35%), Gaps = 5/97 (5%)

Query: 78  FKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLD 137
                ++ LSL  N L  +   +  LTNL  L L +N + N   P +      LT L L 
Sbjct: 216 GILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISN-LAPLS--GLTKLTELKLG 271

Query: 138 NNLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYH 174
            N +  +      +  L  +  + N     S      
Sbjct: 272 ANQISNISPL-AGLTALTNLELNENQLEDISPISNLK 307

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.1 bits (95), Expect = 2e-04
 Identities = 12/93 (12%), Positives = 29/93 (31%), Gaps = 5/93 (5%)

Query: 86  LSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALP 145
             L   ++T        L  +  L      +++      + +  NLT +   NN L  + 
Sbjct: 27  TVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSID---GVEYLNNLTQINFSNNQLTDIT 82

Query: 146 GFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIH 178
               ++ +L  +  + N     +      +   
Sbjct: 83  PL-KNLTKLVDILMNNNQIADITPLANLTNLTG 114

>d1c7va_ a.39.1.5 (A:) Calcium vector protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]} Length = 68

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium vector protein
species: Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]

 Score = 49.8 bits (119), Expect = 8e-09
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 371 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGE-GLSSKEVDQIFREANVTMNSKVRYEDF 429
           +E++ AFK  D    G +     K ++   GE  L+  EV++  +EA+   N  +   +F
Sbjct: 2   EEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDIPEF 61

Query: 430 VKI 432
           + +
Sbjct: 62  MDL 64

>d1c7va_ a.39.1.5 (A:) Calcium vector protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]} Length = 68

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium vector protein
species: Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]

 Score = 40.2 bits (94), Expect = 2e-05
 Identities = 15/57 (26%), Positives = 27/57 (47%)

Query: 304 KKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVM 360
           K + A   G + F +F  +M    +      EV +A K AD   +G +  P+F+ ++
Sbjct: 9   KVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDIPEFMDLI 65

>d1c7va_ a.39.1.5 (A:) Calcium vector protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]} Length = 68

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium vector protein
species: Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]

 Score = 39.4 bits (92), Expect = 4e-05
 Identities = 16/55 (29%), Positives = 26/55 (47%)

Query: 334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTV 388
           +E++ AFK  D    G + F +F  +M    +      EV +A K AD   +G +
Sbjct: 2   EEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVI 56

>d1jc2a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Length = 75

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 49.5 bits (118), Expect = 1e-08
 Identities = 10/62 (16%), Positives = 35/62 (56%)

Query: 371 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFV 430
           +E+ + F+  D    G +  + L  +L   GE +  ++++ + ++++   + ++ +++F+
Sbjct: 9   EELANCFRIFDKNADGFIDIEELGEILRATGEHVIEEDIEDLMKDSDKNNDGRIDFDEFL 68

Query: 431 KI 432
           K+
Sbjct: 69  KM 70

>d1jc2a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Length = 75

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 42.6 bits (100), Expect = 3e-06
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 7/64 (10%)

Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFL 320
           E   CF +F +N  G I  ++EL  I+R+ G      +++  + +      G++ F +FL
Sbjct: 10  ELANCFRIFDKNADGFI-DIEELGEILRATGEHVIEEDIEDLMKDSDKNNDGRIDFDEFL 68

Query: 321 KVMH 324
           K+M 
Sbjct: 69  KMME 72

>d1jc2a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Length = 75

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 34.9 bits (80), Expect = 0.002
 Identities = 10/55 (18%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTV 388
           +E+ + F+  D    G +   + L  +   +    I +++ D  K +D    G +
Sbjct: 9   EELANCFRIFDKNADGFIDI-EELGEILRATGEHVIEEDIEDLMKDSDKNNDGRI 62

>d1jbaa_ a.39.1.5 (A:) Guanylate cyclase activating protein 2, GCAP-2 {Cow (Bos taurus) [TaxId: 9913]} Length = 189

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Guanylate cyclase activating protein 2, GCAP-2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.5 bits (125), Expect = 1e-08
 Identities = 19/174 (10%), Positives = 54/174 (31%), Gaps = 29/174 (16%)

Query: 267 EFRECFFLF---ARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDF 319
           + +E +  F     +GT+  + E     +          ++             + F ++
Sbjct: 22  QLQEWYKKFLEECPSGTL-FMHEFKRFFKVPDNEEATQYVEAMFRAFDTNGDNTIDFLEY 80

Query: 320 LKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKA 379
           +  ++   +   +  ++   FK  D  ++G +   + L ++ +  K +            
Sbjct: 81  VAALNLVLRG-TLEHKLKWTFKIYDKDRNGCIDRQELLDIVESIYKLKK----------- 128

Query: 380 ADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA 433
                                      + VD+IF   +   + ++   +FV+ A
Sbjct: 129 ---------ACSVEVEAEQQGKLLTPEEVVDRIFLLVDENGDGQLSLNEFVEGA 173

>d1g8ia_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 187

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Frequenin (neuronal calcium sensor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (123), Expect = 2e-08
 Identities = 29/164 (17%), Positives = 57/164 (34%), Gaps = 16/164 (9%)

Query: 285 DELSVIMRSLGMSPT-IAELKKYLAEKG--GKLSFPDFLKVMHTHSKAEDIPKEVVDAFK 341
           + +  + R    +   + +  K   +    G+L    F K+        D  K     F 
Sbjct: 8   EVVEELTRKTYFTEKEVQQWYKGFIKDCPSGQLDAAGFQKIYKQFFPFGDPTKFATFVFN 67

Query: 342 AADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWG 401
             D  K G++ F +F++ +   S+     K    AFK  D    G +    +  ++    
Sbjct: 68  VFDENKDGRIEFSEFIQALSVTSRGTLDEKLR-WAFKLYDLDNDGYITRNEMLDIVDAIY 126

Query: 402 ------------EGLSSKEVDQIFREANVTMNSKVRYEDFVKIA 433
                       E    K VD+IF   +   + K+  ++F + +
Sbjct: 127 QMVGNTVELPEEENTPEKRVDRIFAMMDKNADGKLTLQEFQEGS 170

>d2pq3a1 a.39.1.5 (A:3-75) Calmodulin {Rattus norvegicus [TaxId: 10116]} Length = 73

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Rattus norvegicus [TaxId: 10116]

 Score = 48.4 bits (115), Expect = 2e-08
 Identities = 14/62 (22%), Positives = 28/62 (45%)

Query: 371 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFV 430
            E  +AF   D    GT+  K L  V+ + G+  +  E+  +  E +   N  + + +F+
Sbjct: 8   AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL 67

Query: 431 KI 432
            +
Sbjct: 68  TM 69

>d2pq3a1 a.39.1.5 (A:3-75) Calmodulin {Rattus norvegicus [TaxId: 10116]} Length = 73

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Rattus norvegicus [TaxId: 10116]

 Score = 43.8 bits (103), Expect = 1e-06
 Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 5/62 (8%)

Query: 267 EFRECFFLFARNGTIKT-LDELSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFLK 321
           EF+E F LF ++G       EL  +MRSLG +PT AEL+  + E      G + FP+FL 
Sbjct: 9   EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 68

Query: 322 VM 323
           +M
Sbjct: 69  MM 70

>d1qv0a_ a.39.1.5 (A:) Calcium-regulated photoprotein {Hydrozoa (Obelia longissima), obelin [TaxId: 32570]} Length = 189

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-regulated photoprotein
species: Hydrozoa (Obelia longissima), obelin [TaxId: 32570]

 Score = 51.6 bits (122), Expect = 2e-08
 Identities = 30/172 (17%), Positives = 54/172 (31%), Gaps = 26/172 (15%)

Query: 267 EFRECFFLFARN--GTIKTLDEL-----SVIMRSLGMSPTIAELKKYLAEKGGKLSFPDF 319
             +  F     N  G I TLDE+       I   L  +P   +  +   E         F
Sbjct: 15  RHKHMFDFLDINGNGKI-TLDEIVSKASDDICAKLEATPEQTKRHQVCVE-------AFF 66

Query: 320 LKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKA 379
                 + K E    + +D +K   T++  K +  +             I +     F  
Sbjct: 67  RGCGMEYGK-EIAFPQFLDGWKQLATSELKKWARNE----------PTLIREWGDAVFDI 115

Query: 380 ADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVK 431
            D   SGT+     K      G   S ++ +  FR  ++     +  ++  +
Sbjct: 116 FDKDGSGTITLDEWKAYGKISGISPSQEDCEATFRHCDLDNAGDLDVDEMTR 167

>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 77

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.5 bits (115), Expect = 3e-08
 Identities = 16/66 (24%), Positives = 33/66 (50%)

Query: 367 EDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRY 426
           E+   E  +AF   D   +G++ +  L  V+ + G   S  EV+ +  E +V  N ++ +
Sbjct: 6   EEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQIEF 65

Query: 427 EDFVKI 432
            +F+ +
Sbjct: 66  SEFLAL 71

>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 77

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.1 bits (96), Expect = 1e-05
 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 5/67 (7%)

Query: 267 EFRECFFLFARNGT-IKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFLK 321
           EF+E F LF ++     +  EL+ +MRSLG+SP+ AE+   + E       ++ F +FL 
Sbjct: 11  EFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQIEFSEFLA 70

Query: 322 VMHTHSK 328
           +M    K
Sbjct: 71  LMSRQLK 77

>d1fpwa_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 190

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Frequenin (neuronal calcium sensor 1)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.4 bits (117), Expect = 1e-07
 Identities = 29/164 (17%), Positives = 65/164 (39%), Gaps = 16/164 (9%)

Query: 285 DELSVIMRSLGMSPT-IAEL-KKYLAE-KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFK 341
           D+L+ + +S       I +  K +L +   G+L+  DF+K+                 F 
Sbjct: 11  DDLTCLKQSTYFDRREIQQWHKGFLRDCPSGQLAREDFVKIYKQFFPFGSPEDFANHLFT 70

Query: 342 AADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVL---- 397
             D   +G + F +F+ V+ T S+   + +++  AF+  D    G +    +  ++    
Sbjct: 71  VFDKDNNGFIHFEEFITVLSTTSRG-TLEEKLSWAFELYDLNHDGYITFDEMLTIVASVY 129

Query: 398 --------VNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA 433
                   +N  E      V +IF+  +   +  +  ++F + +
Sbjct: 130 KMMGSMVTLNEDEATPEMRVKKIFKLMDKNEDGYITLDEFREGS 173

>d1fpwa_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 190

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Frequenin (neuronal calcium sensor 1)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.5 bits (86), Expect = 0.001
 Identities = 21/125 (16%), Positives = 44/125 (35%), Gaps = 18/125 (14%)

Query: 257 KVFTFKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLA----EK 310
           + F F +P       F +F ++  G I   +E   ++ +        +L           
Sbjct: 54  QFFPFGSPEDFANHLFTVFDKDNNGFI-HFEEFITVLSTTSRGTLEEKLSWAFELYDLNH 112

Query: 311 GGKLSFPDFLKVMH----------THSKAEDIPKEVV-DAFKAADTTKSGKLSFPDFLKV 359
            G ++F + L ++           T ++ E  P+  V   FK  D  + G ++  +F + 
Sbjct: 113 DGYITFDEMLTIVASVYKMMGSMVTLNEDEATPEMRVKKIFKLMDKNEDGYITLDEFREG 172

Query: 360 MHTHS 364
                
Sbjct: 173 SKVDP 177

>d1ggwa_ a.39.1.5 (A:) Cdc4p {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 140

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Cdc4p
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 48.5 bits (114), Expect = 1e-07
 Identities = 36/170 (21%), Positives = 71/170 (41%), Gaps = 37/170 (21%)

Query: 267 EFRECFFLFARNGTIK-TLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHT 325
            +++ F LF R+GT +     +  ++R+ G +PT+AE+ +  +    ++    FL+V++ 
Sbjct: 6   PYKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAEITEIESTLPAEVDMEQFLQVLN- 64

Query: 326 HSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKS 385
                                                       P+E V  F+  D   +
Sbjct: 65  ----------------------------------RPNGFDMPGDPEEFVKGFQVFDKDAT 90

Query: 386 GTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 435
           G +    L++VL + GE LS++E+D++ +      +  V Y DFV++  A
Sbjct: 91  GMIGVGELRYVLTSLGEKLSNEEMDELLKGVP-VKDGMVNYHDFVQMILA 139

>d1alva_ a.39.1.8 (A:) Calpain small (regulatory) subunit (domain VI) {Pig (Sus scrofa) [TaxId: 9823]} Length = 173

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Calpain small (regulatory) subunit (domain VI)
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 48.8 bits (115), Expect = 1e-07
 Identities = 26/167 (15%), Positives = 50/167 (29%), Gaps = 35/167 (20%)

Query: 267 EFRECFFLFA-RNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHT 325
           +FR  F   A  +  + +  EL  I+  +       +   +                   
Sbjct: 5   QFRRLFAQLAGDDMEV-SATELMNILNKVVTRHPDLKTDGF------------------- 44

Query: 326 HSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKS 385
                             D+  +GKL F +F  + +   K + I K+        D  +S
Sbjct: 45  ------GIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKKWQAIYKQF-------DVDRS 91

Query: 386 GTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           GT+ +  L       G  L+      I R         + +++F+  
Sbjct: 92  GTIGSSELPGAFEAAGFHLNEHLYSMIIRR-YSDEGGNMDFDNFISC 137

>d1alva_ a.39.1.8 (A:) Calpain small (regulatory) subunit (domain VI) {Pig (Sus scrofa) [TaxId: 9823]} Length = 173

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Calpain small (regulatory) subunit (domain VI)
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 39.1 bits (90), Expect = 3e-04
 Identities = 21/120 (17%), Positives = 47/120 (39%), Gaps = 19/120 (15%)

Query: 252 DRSGYKVFTFKTPYLEFRECF------FLFARNGTIKTLDELSVIMRSLGMSPT---IAE 302
           D +G   F          + +      F   R+GTI +  EL     + G        + 
Sbjct: 59  DTTGKLGFEEFKYLWNNIKKWQAIYKQFDVDRSGTIGS-SELPGAFEAAGFHLNEHLYSM 117

Query: 303 LKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGK--LSFPDFLKVM 360
           + +  +++GG + F +F+  +            +  AFK+ D   +G+  ++  ++L++ 
Sbjct: 118 IIRRYSDEGGNMDFDNFISCLVRL-------DAMFRAFKSLDKDGTGQIQVNIQEWLQLT 170

>d1m45a_ a.39.1.5 (A:) Myosin Light Chain Mlc1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 146

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Light Chain Mlc1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.2 bits (113), Expect = 2e-07
 Identities = 29/167 (17%), Positives = 58/167 (34%), Gaps = 28/167 (16%)

Query: 267 EFRECFFLFARNGTIK-TLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHT 325
             ++ F LF + G      D L   +R++G +PT   ++  +                 T
Sbjct: 3   ANKDIFTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLDQIT 62

Query: 326 HSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKS 385
                                          +      +  +   ++ V AF+  D   +
Sbjct: 63  G---------------------------LIEVNEKELDATTKAKTEDFVKAFQVFDKEST 95

Query: 386 GTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
           G V    L+++L   GE L+  EVD++ +   V  N ++ Y+ F++ 
Sbjct: 96  GKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDYKKFIED 142

>d1avsa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Length = 81

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 45.7 bits (108), Expect = 3e-07
 Identities = 16/66 (24%), Positives = 31/66 (46%)

Query: 367 EDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRY 426
           E++  E   AF   D    G +  K L  V+   G+  + +E+D I  E +   +  + +
Sbjct: 10  EEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDF 69

Query: 427 EDFVKI 432
           E+F+ +
Sbjct: 70  EEFLVM 75

>d1avsa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Length = 81

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 39.6 bits (92), Expect = 4e-05
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 7/68 (10%)

Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFL 320
           EF+  F +F  +  G I +  EL  +MR LG +PT  EL   + E      G + F +FL
Sbjct: 15  EFKAAFDMFDADGGGDI-STKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFL 73

Query: 321 KVMHTHSK 328
            +M    K
Sbjct: 74  VMMVRQMK 81

>d1avsa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Length = 81

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 36.9 bits (85), Expect = 3e-04
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 5/70 (7%)

Query: 300 IAELKK----YLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPD 355
           IAE K     + A+ GG +S  +   VM    +     +E+    +  D   SG + F +
Sbjct: 13  IAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPT-KEELDAIIEEVDEDGSGTIDFEE 71

Query: 356 FLKVMHTHSK 365
           FL +M    K
Sbjct: 72  FLVMMVRQMK 81

>d1uhka1 a.39.1.5 (A:3-189) Calcium-regulated photoprotein {Jellyfish (Aequorea aequorea), aequorin [TaxId: 168712]} Length = 187

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-regulated photoprotein
species: Jellyfish (Aequorea aequorea), aequorin [TaxId: 168712]

 Score = 48.4 bits (114), Expect = 3e-07
 Identities = 22/177 (12%), Positives = 52/177 (29%), Gaps = 34/177 (19%)

Query: 267 EFRECFFLFARNGTIK-TLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHT 325
             +  F     N   K +LDE+      + ++                        +  T
Sbjct: 13  RHKHMFNFLDVNHNGKISLDEMVYKASDIVIN-----------------------NLGAT 49

Query: 326 HSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKA----------EDIPKEVVD 375
             +A+     V   F  A      +  +P +++     +              I      
Sbjct: 50  PEQAKRHKDAVEAFFGGAGMKYGVETDWPAYIEGWKKLATDELEKYAKNEPTLIRIWGDA 109

Query: 376 AFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
            F   D  ++G +     K      G   SS++ ++ FR  ++  + ++  ++  + 
Sbjct: 110 LFDIVDKDQNGAITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDVDEMTRQ 166

>d1tiza_ a.39.1.5 (A:) Calmodulin-related protein T21P5.17 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 67

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin-related protein T21P5.17
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 44.5 bits (105), Expect = 5e-07
 Identities = 10/58 (17%), Positives = 25/58 (43%)

Query: 375 DAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
             F+  D  K G +     + V + +    + +++ + F E +V  N ++  ++F   
Sbjct: 5   RVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTSC 62

>d1tiza_ a.39.1.5 (A:) Calmodulin-related protein T21P5.17 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 67

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin-related protein T21P5.17
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 35.7 bits (82), Expect = 7e-04
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 304 KKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVM 360
           +K+   K GKLS  +F +V    S      +++V  F+  D   +G+L+  +F   +
Sbjct: 8   EKFDKNKDGKLSLDEFREVALAFSP-YFTQEDIVKFFEEIDVDGNGELNADEFTSCI 63

>d1xo5a_ a.39.1.5 (A:) Calcium- and integrin-binding protein, CIB {Human (Homo sapiens) [TaxId: 9606]} Length = 180

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium- and integrin-binding protein, CIB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (112), Expect = 5e-07
 Identities = 24/142 (16%), Positives = 50/142 (35%), Gaps = 16/142 (11%)

Query: 309 EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK-SGKLSFPDFLKVMHTHSKAE 367
               ++ F   L +     KA    + +    +   T+     LSF DFL ++   S   
Sbjct: 37  SLRAQVPFEQILSLPE--LKANPFKERI---CRVFSTSPAKDSLSFEDFLDLLSVFSDTA 91

Query: 368 DIPKEVVDAFKAADTTKSGTVPAKYLKHVL---------VNWGEGLSSKEVDQIFREANV 418
               +   AF+  D    GT+  + L  ++                  + +D I  E+++
Sbjct: 92  TPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDI 151

Query: 419 TMNSKVRYEDFVKIACAPVPDY 440
             +  +   +F  +  +  PD+
Sbjct: 152 DRDGTINLSEFQHV-ISRSPDF 172

>d1qx2a_ a.39.1.1 (A:) Calbindin D9K {Cow (Bos taurus) [TaxId: 9913]} Length = 76

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calbindin D9K
domain: Calbindin D9K
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.5 bits (105), Expect = 7e-07
 Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 370 PKEVVDAFK--AADTTKSGTVPAKYLKHVLVNWGE--GLSSKEVDQIFREANVTMNSKVR 425
           P+E+  AF+  AA       +  + LK V+   G         +D++  E +   + +V 
Sbjct: 4   PEEIKGAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVS 63

Query: 426 YEDFVKI 432
           +E+F+ +
Sbjct: 64  FEEFLVM 70

>d1qx2a_ a.39.1.1 (A:) Calbindin D9K {Cow (Bos taurus) [TaxId: 9913]} Length = 76

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calbindin D9K
domain: Calbindin D9K
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.2 bits (104), Expect = 9e-07
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 11/72 (15%)

Query: 267 EFRECFFLFAR----NGTIKTLDELSVIMRSLGMSPTI--AELKKYLAE----KGGKLSF 316
           E +  F +FA        I + +EL ++M++LG S     + L + + E      G++SF
Sbjct: 6   EIKGAFEVFAAKEGDPNQI-SKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVSF 64

Query: 317 PDFLKVMHTHSK 328
            +FL +M   S+
Sbjct: 65  EEFLVMMKKISQ 76

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.1 bits (106), Expect = 1e-06
 Identities = 25/113 (22%), Positives = 39/113 (34%), Gaps = 24/113 (21%)

Query: 66  LSLSYTPIGR--RIFKCDTVEVLSLKSNSLTSLPPDIGRLTNL----------------- 106
           L L++  +     + +   V  L L  N L +LPP +  L  L                 
Sbjct: 3   LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA 62

Query: 107 -----RVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQL 154
                + L L +N LQ ++    L  C  L  L L  N L    G    + ++
Sbjct: 63  NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.6 bits (102), Expect = 4e-06
 Identities = 23/101 (22%), Positives = 32/101 (31%), Gaps = 23/101 (22%)

Query: 85  VLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQ--------------------NASIPFT 124
           VL L    LT L   + +L  +  L L+ N L+                           
Sbjct: 2   VLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 125 LTFCKNLTHLYLDNNLLDALP--GFLLSMPQLDTVYRHGNH 163
           +     L  L L NN L        L+S P+L  +   GN 
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 101

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.8 bits (82), Expect = 0.002
 Identities = 22/100 (22%), Positives = 34/100 (34%), Gaps = 5/100 (5%)

Query: 107 RVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNHNYF 166
           RVL L    L   ++   L     +THL L +N L ALP  L ++  L+ +    N    
Sbjct: 1   RVLHLAHKDL---TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN 57

Query: 167 KSTFMWYHSDIHARIRSTSTRDEVLRKQKKLHQPSRLQDL 206
                         + +   +       + L    RL  L
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQ--SAAIQPLVSCPRLVLL 95

>d1wdcb_ a.39.1.5 (B:) Myosin Essential Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 142

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Essential Chain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

 Score = 45.4 bits (106), Expect = 1e-06
 Identities = 35/167 (20%), Positives = 59/167 (35%), Gaps = 39/167 (23%)

Query: 267 EFRECFFLFARNGT-IKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHT 325
           E +E F +   +     + +++  I   LG +P   EL   L E  G L+F  FL +   
Sbjct: 8   EMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKEAPGPLNFTMFLSIFSD 67

Query: 326 HSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKS 385
                D  + + +AF   D  ++ KL+                                 
Sbjct: 68  KLSGTDSEETIRNAFAMFDEQETKKLN--------------------------------- 94

Query: 386 GTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
                +Y+K +L N G+  +  E+   F+EA V    K  Y  F  +
Sbjct: 95  ----IEYIKDLLENMGDNFNKDEMRMTFKEAPVE-GGKFDYVKFTAM 136

>d1cb1a_ a.39.1.1 (A:) Calbindin D9K {Pig (Sus scrofa) [TaxId: 9823]} Length = 78

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calbindin D9K
domain: Calbindin D9K
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 43.3 bits (102), Expect = 2e-06
 Identities = 12/71 (16%), Positives = 30/71 (42%), Gaps = 4/71 (5%)

Query: 366 AEDIPKEVVDAFKAADTTK--SGTVPAKYLKHVLVN--WGEGLSSKEVDQIFREANVTMN 421
           A+  P E+   F+     +     +  + LK ++           + +D +F+E +   +
Sbjct: 2   AQKSPAELKSIFEKYAAKEGDPNQLSKEELKQLIQAEFPSLLKGPRTLDDLFQELDKNGD 61

Query: 422 SKVRYEDFVKI 432
            +V +E+F  +
Sbjct: 62  GEVSFEEFQVL 72

>d1cb1a_ a.39.1.1 (A:) Calbindin D9K {Pig (Sus scrofa) [TaxId: 9823]} Length = 78

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calbindin D9K
domain: Calbindin D9K
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 40.6 bits (95), Expect = 2e-05
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 7/69 (10%)

Query: 299 TIAELK----KYLAEKG--GKLSFPDFLKVMHTHSKAEDIPKEVVDA-FKAADTTKSGKL 351
           + AELK    KY A++G   +LS  +  +++     +       +D  F+  D    G++
Sbjct: 5   SPAELKSIFEKYAAKEGDPNQLSKEELKQLIQAEFPSLLKGPRTLDDLFQELDKNGDGEV 64

Query: 352 SFPDFLKVM 360
           SF +F  ++
Sbjct: 65  SFEEFQVLV 73

>d1nyaa_ a.39.1.5 (A:) Calerythrin {Saccharopolyspora erythraea [TaxId: 1836]} Length = 176

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calerythrin
species: Saccharopolyspora erythraea [TaxId: 1836]

 Score = 44.3 bits (103), Expect = 5e-06
 Identities = 18/175 (10%), Positives = 41/175 (23%), Gaps = 30/175 (17%)

Query: 267 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMH 324
             ++ F  +  +  G +    +     + +  +                  F        
Sbjct: 8   RLKKRFDRWDFDGNGAL-ERADFEKEAQHIAEA------------------FGKDAGAAE 48

Query: 325 THSKAEDIPKEVVDAFKAADTTKSGKLSFP-------DFLKVMHTHSKAEDIPKEVVDAF 377
             +             K A     G L+         + +      S    +   V    
Sbjct: 49  VQTLKNAFGGLFDYLAKEAGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIV 108

Query: 378 KAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
              D    G + A      L   G   S  E  + F + +   N ++  ++ +  
Sbjct: 109 GMCDKNADGQINADEFAAWLTALGM--SKAEAAEAFNQVDTNGNGELSLDELLTA 161

>d1wdcc_ a.39.1.5 (C:) Myosin Regulatory Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 152

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Regulatory Chain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

 Score = 43.9 bits (102), Expect = 6e-06
 Identities = 37/179 (20%), Positives = 63/179 (35%), Gaps = 41/179 (22%)

Query: 267 EFRECFFLF----ARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKV 322
           + ++ F LF     R+G +    +L  + R LG++P                        
Sbjct: 8   DLKDVFELFDFWDGRDGAV-DAFKLGDVCRCLGINPR----------------------- 43

Query: 323 MHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADT 382
              +     +        K+                        +    + ++AFK  D 
Sbjct: 44  ---NEDVFAVGGTHKMGEKSLPF-------EEFLPAYEGLMDCEQGTFADYMEAFKTFDR 93

Query: 383 TKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNS--KVRYEDFVKIACA-PVP 438
              G +    L+HVL   GE LS ++VD+I +  ++  +    V+YEDFVK   A P P
Sbjct: 94  EGQGFISGAELRHVLTALGERLSDEDVDEIIKLTDLQEDLEGNVKYEDFVKKVMAGPYP 152

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 45.6 bits (106), Expect = 6e-06
 Identities = 13/166 (7%), Positives = 39/166 (23%), Gaps = 4/166 (2%)

Query: 84  EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNA---SIPFTLTFCKNLTHLYLDNNL 140
           ++ ++ +    S+   +    +++ + L+ N +       +   +   K+L      +  
Sbjct: 11  KLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIF 70

Query: 141 LDALPGFLLSMPQ-LDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEVLRKQKKLHQ 199
              +   +    + L          +                           +   LH 
Sbjct: 71  TGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHN 130

Query: 200 PSRLQDLAVQSVIASKENFFEPGLFPGPLVDYIAREYNQYHVCHYC 245
                    +   A +E          P +  I    N+       
Sbjct: 131 NGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK 176

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.2 bits (84), Expect = 0.003
 Identities = 12/112 (10%), Positives = 29/112 (25%), Gaps = 6/112 (5%)

Query: 72  PIGRRIFKCDTVEVLSLKSNSLT-----SLPPDIGRLTNLRVLCLTDNCLQNASIPFTLT 126
            +   + + D+V+ + L  N++       L  +I    +L +   +D             
Sbjct: 22  SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVK-DEIPE 80

Query: 127 FCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIH 178
             + L    L    L  +     +             +        Y  +  
Sbjct: 81  ALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 132

>d1omra_ a.39.1.5 (A:) Recoverin {Cow (Bos taurus) [TaxId: 9913]} Length = 201

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Recoverin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.4 bits (104), Expect = 8e-06
 Identities = 23/166 (13%), Positives = 62/166 (37%), Gaps = 18/166 (10%)

Query: 285 DELSVIMRSLGMSPT-IAEL-KKYLAE-KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFK 341
           + L  +  +   +   ++   + +L E   G+++  +F  +        D        F+
Sbjct: 11  EILEELQLNTKFTEEELSSWYQSFLKECPSGRITRQEFQTIYSKFFPEADPKAYAQHVFR 70

Query: 342 AADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWG 401
           + D    G L F +++  +H  S  +   K +  AF   D   +GT+    +  ++    
Sbjct: 71  SFDANSDGTLDFKEYVIALHMTSAGKTNQK-LEWAFSLYDVDGNGTISKNEVLEIVTAIF 129

Query: 402 EGLSSKE--------------VDQIFREANVTMNSKVRYEDFVKIA 433
           + +S ++               ++I+       + K+  ++F++  
Sbjct: 130 KMISPEDTKHLPEDENTPEKRAEKIWGFFGKKDDDKLTEKEFIEGT 175

>d1wrka1 a.39.1.5 (A:4-85) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]} Length = 82

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Human (Homo sapiens), cardiac isoform [TaxId: 9606]

 Score = 41.1 bits (96), Expect = 1e-05
 Identities = 13/67 (19%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 367 EDIPKEVVDAFKAADTT-KSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVR 425
           E+   E   AF       + G++  K L  V+   G+  + +E+ ++  E +   +  V 
Sbjct: 11  EEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVD 70

Query: 426 YEDFVKI 432
           +++F+ +
Sbjct: 71  FDEFLVM 77

>d1wrka1 a.39.1.5 (A:4-85) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]} Length = 82

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Human (Homo sapiens), cardiac isoform [TaxId: 9606]

 Score = 38.8 bits (90), Expect = 9e-05
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 8/67 (11%)

Query: 267 EFRECFFLF---ARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDF 319
           EF+  F +F   A +G+I +  EL  +MR LG +PT  EL++ + E      G + F +F
Sbjct: 16  EFKAAFDIFVLGAEDGSI-STKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEF 74

Query: 320 LKVMHTH 326
           L +M   
Sbjct: 75  LVMMVRS 81

>d2opoa1 a.39.1.10 (A:6-86) Polcalcin Che a 3 {Pigweed (Chenopodium album) [TaxId: 3559]} Length = 81

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Polcalcin
domain: Polcalcin Che a 3
species: Pigweed (Chenopodium album) [TaxId: 3559]

 Score = 41.1 bits (96), Expect = 1e-05
 Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 9/82 (10%)

Query: 300 IAELKK----YLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPD 355
           IA+ ++    +     GK+S  +    + T       P EV       DT   G +SF +
Sbjct: 5   IADRERIFKRFDTNGDGKISSSELGDALKTLG--SVTPDEVRRMMAEIDTDGDGFISFDE 62

Query: 356 FLKVMHTHSKAEDIPKEVVDAF 377
           F            + K+V   F
Sbjct: 63  FTDFA---RANRGLVKDVSKIF 81

>d2opoa1 a.39.1.10 (A:6-86) Polcalcin Che a 3 {Pigweed (Chenopodium album) [TaxId: 3559]} Length = 81

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Polcalcin
domain: Polcalcin Che a 3
species: Pigweed (Chenopodium album) [TaxId: 3559]

 Score = 39.5 bits (92), Expect = 4e-05
 Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 367 EDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRY 426
           +DI  +    FK  DT   G + +  L   L   G  ++  EV ++  E +   +  + +
Sbjct: 3   QDI-ADRERIFKRFDTNGDGKISSSELGDALKTLGS-VTPDEVRRMMAEIDTDGDGFISF 60

Query: 427 EDFVKI 432
           ++F   
Sbjct: 61  DEFTDF 66

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 44.4 bits (103), Expect = 2e-05
 Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 3/90 (3%)

Query: 51  CSHIWIPQYFSHAFLLSLSYTPIGRRIFKCDTVEVLSLKSNSLT-SLPPDIGRLTNLRVL 109
                  +      L   S      ++     +  L L++N +  +LP  + +L  L  L
Sbjct: 214 SVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273

Query: 110 CLTDNCLQNASIPFTLTFCKNLTHLYLDNN 139
            ++ N L    IP      +        NN
Sbjct: 274 NVSFNNLC-GEIP-QGGNLQRFDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 77  IFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDN-CLQNASIP 122
           + +   +  L++  N+L    P  G L    V    +N CL  + +P
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 310

>d2sasa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]} Length = 185

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Sarcoplasmic calcium-binding protein
species: Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]

 Score = 42.7 bits (99), Expect = 2e-05
 Identities = 24/177 (13%), Positives = 51/177 (28%), Gaps = 32/177 (18%)

Query: 267 EFRECFFLFA---RNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVM 323
           + +  F  F     +G+I   ++   +M                    G LS  D+  + 
Sbjct: 9   KIKFTFDFFLDMNHDGSI-QDNDFEDMMTRYKE------------VNKGSLSDADYKSMQ 55

Query: 324 HTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKA--------EDIPKEVVD 375
            +         E  D    AD  K   +S+ ++L +                     +  
Sbjct: 56  ASL------EDEWRDLKGRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPF 109

Query: 376 AFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 432
            FK  D +  G V  +  ++   N+   L   +V  ++               + ++
Sbjct: 110 LFKGMDVSGDGIVDLEEFQNYCKNFQ--LQCADVPAVYNVITDGGKVTFDLNRYKEL 164

>d1wlza1 a.39.1.7 (A:229-311) DJ-1-binding protein, DJBP {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: DJ-1-binding protein, DJBP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (93), Expect = 3e-05
 Identities = 12/61 (19%), Positives = 30/61 (49%)

Query: 371 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFV 430
             +   F+  DT K+ T+  +  + +     + L+ ++ D+++ E  V    +++Y DF+
Sbjct: 20  HAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLKYPDFL 79

Query: 431 K 431
            
Sbjct: 80  S 80

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (97), Expect = 4e-05
 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 2/100 (2%)

Query: 65  LLSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNAS-IPF 123
            L L        +   +   VL+ +S+   +L      +  L  L L++N L     +  
Sbjct: 26  ALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSS 85

Query: 124 TLTFCKNLTHLYLDNNLLDALPGFLLSM-PQLDTVYRHGN 162
            +    NL  L L  N L +          +L+ ++  GN
Sbjct: 86  IVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGN 125

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 0.001
 Identities = 12/85 (14%), Positives = 25/85 (29%), Gaps = 3/85 (3%)

Query: 88  LKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGF 147
           LK   +  L   + +  +     L    L+       L        L   +++   L   
Sbjct: 4   LKPEQVEQLKLIMSKRYDGSQQAL---DLKGLRSDPDLVAQNIDVVLNRRSSMAATLRII 60

Query: 148 LLSMPQLDTVYRHGNHNYFKSTFMW 172
             ++P+L ++    N  Y       
Sbjct: 61  EENIPELLSLNLSNNRLYRLDDMSS 85

>d1xk4a1 a.39.1.2 (A:1-87) Calcyclin (S100) {Human (Homo sapiens), calgranulin s100a8, MRP8 [TaxId: 9606]} Length = 87

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), calgranulin s100a8, MRP8 [TaxId: 9606]

 Score = 39.0 bits (91), Expect = 8e-05
 Identities = 13/72 (18%), Positives = 32/72 (44%), Gaps = 3/72 (4%)

Query: 364 SKAEDIPKEVVDAF-KAADTTKSG-TVPAKYLKHVLVN-WGEGLSSKEVDQIFREANVTM 420
           ++ E     ++D + K +    +   V    LK +L     + +  K  D  F+E ++  
Sbjct: 3   TELEKALNSIIDVYHKYSLIKGNFHAVYRDDLKKLLETESPQYIRKKGADVWFKELDINT 62

Query: 421 NSKVRYEDFVKI 432
           +  V +++F+ +
Sbjct: 63  DGAVNFQEFLIL 74

>d1xk4a1 a.39.1.2 (A:1-87) Calcyclin (S100) {Human (Homo sapiens), calgranulin s100a8, MRP8 [TaxId: 9606]} Length = 87

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), calgranulin s100a8, MRP8 [TaxId: 9606]

 Score = 35.6 bits (82), Expect = 0.001
 Identities = 12/50 (24%), Positives = 20/50 (40%)

Query: 311 GGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVM 360
              +   D  K++ T S      K     FK  D    G ++F +FL ++
Sbjct: 26  FHAVYRDDLKKLLETESPQYIRKKGADVWFKELDINTDGAVNFQEFLILV 75

>d2zfda1 a.39.1.5 (A:32-214) Calcineurin B-like protein 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 183

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcineurin B-like protein 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 40.3 bits (93), Expect = 1e-04
 Identities = 23/130 (17%), Positives = 50/130 (38%), Gaps = 10/130 (7%)

Query: 312 GKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPK 371
           G ++  +F   +   +K E         F   DT  +G L F +F + +        I  
Sbjct: 34  GLINKEEFQLALFKTNKKES--LFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDD 91

Query: 372 EVVDAFKAADTTKSGTVPAK--------YLKHVLVNWGEGLSSKEVDQIFREANVTMNSK 423
           ++  +F+  D  + G +  +         L    +N  + +    +D+ F EA+   + K
Sbjct: 92  KIHFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDGK 151

Query: 424 VRYEDFVKIA 433
           +  E++  + 
Sbjct: 152 IDKEEWRSLV 161

>d2zkmx1 a.39.1.7 (X:142-311) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (93), Expect = 1e-04
 Identities = 14/142 (9%), Positives = 34/142 (23%), Gaps = 19/142 (13%)

Query: 305 KYLAEKGGKLSFPDFLKVMHT-HSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTH 363
           K      GK+   +F ++      + E             D         P +   + + 
Sbjct: 15  KMQLNSEGKIPVKNFFQMFPADRKRVEAALSACHLPKGKNDAINPEDFPEPVYKSFLMSL 74

Query: 364 SKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGE----------GLSSKEVDQIF 413
                   E+ + F +        +  ++L   +                    +V  + 
Sbjct: 75  CP----RPEIDEIFTSYHAKAKPYMTKEHLTKFINQKQRDSRLNSLLFPPARPDQVQGLI 130

Query: 414 REANVTMNSKVR----YEDFVK 431
            +   +  +  R     E  V 
Sbjct: 131 DKYEPSGINAQRGQLSPEGMVW 152

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 1e-04
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 77  IFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL 136
           +     +  L    N ++ + P +  L NL  + L +N + + S    L    NL  + L
Sbjct: 169 LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS---PLANTSNLFIVTL 224

Query: 137 DN 138
            N
Sbjct: 225 TN 226

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 19/72 (26%), Positives = 24/72 (33%)

Query: 91  NSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLS 150
           N L +LPP +   T         N          L   +NL  L L  N L  +P     
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193

Query: 151 MPQLDTVYRHGN 162
              L   + HGN
Sbjct: 194 SHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 6e-04
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 91  NSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD 142
           N+LT LP   +  L NL  L L +N     +IP        L   +L  N   
Sbjct: 158 NNLTELPAGLLNGLENLDTLLLQEN--SLYTIPKGFFGSHLLPFAFLHGNPWL 208

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 3e-04
 Identities = 15/124 (12%), Positives = 31/124 (25%), Gaps = 9/124 (7%)

Query: 84  EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLT--------FCKNLTHLY 135
             L L+   +  +      L     +  +DN ++       L           +      
Sbjct: 21  RELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGE 80

Query: 136 LDNNLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEVLRKQK 195
             +  L  L   +L+   L  +         KS         +        R  V+ K  
Sbjct: 81  GLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR-NPVTNKKHYRLYVIYKVP 139

Query: 196 KLHQ 199
           ++  
Sbjct: 140 QVRV 143

>d1snla_ a.39.1.7 (A:) Nucleobindin 1 (CALNUC) {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: Nucleobindin 1 (CALNUC)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (87), Expect = 3e-04
 Identities = 11/95 (11%), Positives = 25/95 (26%), Gaps = 22/95 (23%)

Query: 269 RECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTH 326
           +  F L     +G +    EL  +           + +                      
Sbjct: 19  KTFFILHDINSDGVL-DEQELEALFTKELEKVYDPKNE------------------EDDM 59

Query: 327 SKAEDIPKEVVDA-FKAADTTKSGKLSFPDFLKVM 360
            + E+    + +   K  DT +   ++  +FL   
Sbjct: 60  REMEEERLRMREHVMKNVDTNQDRLVTLEEFLAST 94

>d1snla_ a.39.1.7 (A:) Nucleobindin 1 (CALNUC) {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: Nucleobindin 1 (CALNUC)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (79), Expect = 0.003
 Identities = 8/75 (10%), Positives = 21/75 (28%), Gaps = 16/75 (21%)

Query: 375 DAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKE----------------VDQIFREANV 418
             F   D    G +  + L+ +     E +   +                 + + +  + 
Sbjct: 20  TFFILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVMKNVDT 79

Query: 419 TMNSKVRYEDFVKIA 433
             +  V  E+F+   
Sbjct: 80  NQDRLVTLEEFLAST 94

>d1s6ca_ a.39.1.5 (A:) Kchip1, Kv4 potassium channel-interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 178

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Kchip1, Kv4 potassium channel-interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.0 bits (90), Expect = 4e-04
 Identities = 23/134 (17%), Positives = 47/134 (35%), Gaps = 13/134 (9%)

Query: 312 GKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPK 371
           G ++   F ++        D        F A DTT++G + F DF+  +        + +
Sbjct: 29  GVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALS-ILLRGTVHE 87

Query: 372 EVVDAFKAADTTKSGTV------------PAKYLKHVLVNWGEGLSSKEVDQIFREANVT 419
           ++   F   D  K G +                 K+      E    + VD  F++ +  
Sbjct: 88  KLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKN 147

Query: 420 MNSKVRYEDFVKIA 433
            +  V  ++F++  
Sbjct: 148 KDGIVTLDEFLESC 161

>d1yuta1 a.39.1.2 (A:1-98) Calcyclin (S100) {Human (Homo sapiens), s100a13 [TaxId: 9606]} Length = 98

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), s100a13 [TaxId: 9606]

 Score = 36.8 bits (85), Expect = 6e-04
 Identities = 10/73 (13%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 364 SKAEDIPKEVVDAFK--AADTTKSGTVPAKYLKHVLVNWGEGL--SSKEVDQIFREANVT 419
           ++ E+  + VV  F   A    +  ++     K ++      L      +D+  +  +V 
Sbjct: 7   TELEESIETVVTTFFTFARQEGRKDSLSVNEFKELVTQQLPHLLKDVGSLDEKMKSLDVN 66

Query: 420 MNSKVRYEDFVKI 432
            +S++++ ++ ++
Sbjct: 67  QDSELKFNEYWRL 79

>d1yuta1 a.39.1.2 (A:1-98) Calcyclin (S100) {Human (Homo sapiens), s100a13 [TaxId: 9606]} Length = 98

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), s100a13 [TaxId: 9606]

 Score = 36.8 bits (85), Expect = 7e-04
 Identities = 12/82 (14%), Positives = 32/82 (39%), Gaps = 4/82 (4%)

Query: 300 IAELKKYLAEKG--GKLSFPDFLKVMHTHSKAEDIPKEVVDA-FKAADTTKSGKLSFPDF 356
           +     +  ++G    LS  +F +++             +D   K+ D  +  +L F ++
Sbjct: 17  VTTFFTFARQEGRKDSLSVNEFKELVTQQLPHLLKDVGSLDEKMKSLDVNQDSELKFNEY 76

Query: 357 LKVMHTHSKAEDIPKEVVDAFK 378
            +++   +K     K+ +   K
Sbjct: 77  WRLIGELAKEIR-KKKDLKIRK 97

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.001
 Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 5/64 (7%)

Query: 105 NLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLD-----ALPGFLLSMPQLDTVYR 159
           +++ L +    L +A     L   +    + LD+  L       +   L   P L  +  
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 160 HGNH 163
             N 
Sbjct: 63  RSNE 66

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 14/92 (15%)

Query: 80  CDTVEVLSLKSNSLT-----SLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKN---- 130
              + VL L    ++     SL   +    +LR L L++NCL +A I   +   +     
Sbjct: 368 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCL 427

Query: 131 LTHLYLDNNLL-----DALPGFLLSMPQLDTV 157
           L  L L +        D L       P L  +
Sbjct: 428 LEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1fi6a_ a.39.1.6 (A:) Reps1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 92

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Reps1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.2 bits (83), Expect = 0.001
 Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 315 SFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKA---EDIPK 371
            F          +K++    E+   ++ +D  K G L+  +F    H         D+P+
Sbjct: 24  GFIPGSAAKEFFTKSKLPILELSHIWELSDFDKDGALTLDEFCAAFHLVVARKNGYDLPE 83

Query: 372 EV 373
           ++
Sbjct: 84  KL 85

>d3c1va1 a.39.1.2 (A:2-94) Calcyclin (S100) {Human (Homo sapiens), s100a4 [TaxId: 9606]} Length = 93

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), s100a4 [TaxId: 9606]

 Score = 36.0 bits (83), Expect = 0.001
 Identities = 7/63 (11%), Positives = 22/63 (34%), Gaps = 6/63 (9%)

Query: 304 KKYLAEKG--GKLSFPDFLKVM----HTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFL 357
            KY  ++G   KL+  +  +++     +                  D+ +  ++ F ++ 
Sbjct: 16  HKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYC 75

Query: 358 KVM 360
             +
Sbjct: 76  VFL 78

>d2hf5a1 a.39.1.5 (A:81-113) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]} Length = 33

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Human (Homo sapiens), cardiac isoform [TaxId: 9606]

 Score = 34.1 bits (79), Expect = 0.001
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)

Query: 267 EFRECFFLFAR--NGTIKTLDELSVIMRSLG 295
           E RE F +F +  NG I +  EL  +M +LG
Sbjct: 4   EIREAFRVFDKDGNGYI-SAAELRHVMTNLG 33

>d1zfsa1 a.39.1.2 (A:1-93) Calcyclin (S100) {Rat (Rattus norvegicus), s100a1 [TaxId: 10116]} Length = 93

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Rat (Rattus norvegicus), s100a1 [TaxId: 10116]

 Score = 34.9 bits (80), Expect = 0.002
 Identities = 15/76 (19%), Positives = 32/76 (42%), Gaps = 7/76 (9%)

Query: 364 SKAEDIPKEVVDAFKAADTT--KSGTVPAKYLKHVL-----VNWGEGLSSKEVDQIFREA 416
           S+ E   + +++ F A          +  K LK +L             +  VD+I +E 
Sbjct: 2   SELETAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKIMKEL 61

Query: 417 NVTMNSKVRYEDFVKI 432
           +   + +V +++FV +
Sbjct: 62  DENGDGEVDFQEFVVL 77

>d1zfsa1 a.39.1.2 (A:1-93) Calcyclin (S100) {Rat (Rattus norvegicus), s100a1 [TaxId: 10116]} Length = 93

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Rat (Rattus norvegicus), s100a1 [TaxId: 10116]

 Score = 34.5 bits (79), Expect = 0.003
 Identities = 10/63 (15%), Positives = 24/63 (38%), Gaps = 6/63 (9%)

Query: 304 KKYLAEKG--GKLSFPDFLKVMH----THSKAEDIPKEVVDAFKAADTTKSGKLSFPDFL 357
             +  ++G   KLS  +   ++     +    +     V    K  D    G++ F +F+
Sbjct: 16  HAHSGKEGDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKIMKELDENGDGEVDFQEFV 75

Query: 358 KVM 360
            ++
Sbjct: 76  VLV 78

>d1c07a_ a.39.1.6 (A:) Eps15 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Eps15
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (80), Expect = 0.002
 Identities = 15/62 (24%), Positives = 19/62 (30%), Gaps = 4/62 (6%)

Query: 316 FPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMH----THSKAEDIPK 371
           F   L+V     K       +   +   DT   GKLS   F    H       K  D P 
Sbjct: 26  FVSGLEVREIFLKTGLPSTLLAHIWSLCDTKDCGKLSKDQFALAFHLISQKLIKGIDPPH 85

Query: 372 EV 373
            +
Sbjct: 86  VL 87

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	441
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.86
d1wdcb_	142	Myosin Essential Chain {Bay scallop (Aequipecten i	99.83
d1lkja_	146	Calmodulin {Baker's yeast (Saccharomyces cerevisia	99.82
d1exra_	146	Calmodulin {Ciliate (Paramecium tetraurelia) [TaxI	99.81
d1ggwa_	140	Cdc4p {Fission yeast (Schizosaccharomyces pombe) [	99.81
d1wdcc_	152	Myosin Regulatory Chain {Bay scallop (Aequipecten	99.81
d1y1xa_	182	Programmed cell death 6 protein-like protein {Leis	99.8
d1hqva_	181	Apoptosis-linked protein alg-2 {Mouse (Mus musculu	99.79
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.79
d2obha1	141	Calmodulin {Human (Homo sapiens) [TaxId: 9606]}	99.79
d2mysb_	145	Myosin Essential Chain {Chicken (Gallus gallus) [T	99.78
d1alva_	173	Calpain small (regulatory) subunit (domain VI) {Pi	99.78
d2mysc_	145	Myosin Regulatory Chain {Chicken (Gallus gallus) [	99.77
d1hqva_	181	Apoptosis-linked protein alg-2 {Mouse (Mus musculu	99.77
d1k94a_	165	Grancalcin {Human (Homo sapiens) [TaxId: 9606]}	99.76
d1omra_	201	Recoverin {Cow (Bos taurus) [TaxId: 9913]}	99.76
d1k94a_	165	Grancalcin {Human (Homo sapiens) [TaxId: 9606]}	99.76
d1juoa_	172	Sorcin {Human (Homo sapiens) [TaxId: 9606]}	99.76
d1m45a_	146	Myosin Light Chain Mlc1p {Baker's yeast (Saccharom	99.75
d1dtla_	156	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	99.75
d1jfja_	134	EHCABP {Entamoeba (Entamoeba histolytica) [TaxId:	99.75
d1df0a1	186	Calpain large subunit, C-terminal domain (domain I	99.75
d1bjfa_	181	Neurocalcin {Cow (Bos taurus) [TaxId: 9913]}	99.75
d1fpwa_	190	Frequenin (neuronal calcium sensor 1) {Baker's yea	99.74
d1topa_	162	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	99.73
d1y1xa_	182	Programmed cell death 6 protein-like protein {Leis	99.73
d1g8ia_	187	Frequenin (neuronal calcium sensor 1) {Human (Homo	99.73
d1exra_	146	Calmodulin {Ciliate (Paramecium tetraurelia) [TaxI	99.73
d1jbaa_	189	Guanylate cyclase activating protein 2, GCAP-2 {Co	99.72
d1auib_	165	Calcineurin regulatory subunit (B-chain) {Human (H	99.72
d5pala_	109	Parvalbumin {Leopard shark (Triakis semifasciata)	99.71
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.71
d1qxpa2	188	Calpain large subunit, C-terminal domain (domain I	99.7
d2zfda1	183	Calcineurin B-like protein 2 {Thale cress (Arabido	99.7
d1s6ca_	178	Kchip1, Kv4 potassium channel-interacting protein	99.7
d1s6ia_	182	Calcium-dependent protein kinase sk5 CLD {Soybean	99.7
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.69
d1xo5a_	180	Calcium- and integrin-binding protein, CIB {Human	99.69
d1ij5a_	321	Cbp40 (plasmodial specific CaII-binding protein LA	99.68
d1w7jb1	139	Myosin Essential Chain {Human (Homo sapiens) [TaxI	99.68
d1pvaa_	109	Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}	99.68
d2obha1	141	Calmodulin {Human (Homo sapiens) [TaxId: 9606]}	99.68
d1df0a1	186	Calpain large subunit, C-terminal domain (domain I	99.67
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.67
d2mysc_	145	Myosin Regulatory Chain {Chicken (Gallus gallus) [	99.67
d1juoa_	172	Sorcin {Human (Homo sapiens) [TaxId: 9606]}	99.67
d1alva_	173	Calpain small (regulatory) subunit (domain VI) {Pi	99.66
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.65
d2sasa_	185	Sarcoplasmic calcium-binding protein {Amphioxus (B	99.64
d1qxpa2	188	Calpain large subunit, C-terminal domain (domain I	99.63
d1qv0a_	189	Calcium-regulated photoprotein {Hydrozoa (Obelia l	99.62
d1nyaa_	176	Calerythrin {Saccharopolyspora erythraea [TaxId: 1	99.61
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.61
d1rwya_	109	Parvalbumin {Rat (Rattus rattus) [TaxId: 10117]}	99.6
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.6
d2scpa_	174	Sarcoplasmic calcium-binding protein {Sandworm (Ne	99.6
d1jfja_	134	EHCABP {Entamoeba (Entamoeba histolytica) [TaxId:	99.59
d1jbaa_	189	Guanylate cyclase activating protein 2, GCAP-2 {Co	99.58
d1fpwa_	190	Frequenin (neuronal calcium sensor 1) {Baker's yea	99.58
d2pvba_	107	Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}	99.58
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.58
d1pvaa_	109	Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}	99.56
d1g8ia_	187	Frequenin (neuronal calcium sensor 1) {Human (Homo	99.56
d5pala_	109	Parvalbumin {Leopard shark (Triakis semifasciata)	99.55
d1uhka1	187	Calcium-regulated photoprotein {Jellyfish (Aequore	99.55
d1omra_	201	Recoverin {Cow (Bos taurus) [TaxId: 9913]}	99.53
d1bjfa_	181	Neurocalcin {Cow (Bos taurus) [TaxId: 9913]}	99.53
d1jc2a_	75	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	99.53
d1rroa_	108	Oncomodulin {Rat (Rattus norvegicus) [TaxId: 10116	99.52
d1s6ca_	178	Kchip1, Kv4 potassium channel-interacting protein	99.52
d1fw4a_	65	Calmodulin {Cow (Bos taurus) [TaxId: 9913]}	99.52
d1oqpa_	77	Caltractin (centrin 2) {Green algae (Chlamydomonas	99.51
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.51
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.5
d1tiza_	67	Calmodulin-related protein T21P5.17 {Thale cress (	99.49
d1fi5a_	81	Troponin C {Chicken (Gallus gallus), cardiac isofo	99.48
d1c7va_	68	Calcium vector protein {Amphioxus (Branchiostoma l	99.48
d1f54a_	77	Calmodulin {Baker's yeast (Saccharomyces cerevisia	99.48
d1avsa_	81	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	99.48
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.48
d2pvba_	107	Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}	99.47
d1wrka1	82	Troponin C {Human (Homo sapiens), cardiac isoform	99.46
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.46
d2fcea1	61	Calmodulin {Cow (Bos taurus) [TaxId: 9913]}	99.46
d1rwya_	109	Parvalbumin {Rat (Rattus rattus) [TaxId: 10117]}	99.45
d1s6ja_	87	Calcium-dependent protein kinase sk5 CLD {Soybean	99.45
d2pq3a1	73	Calmodulin {Rattus norvegicus [TaxId: 10116]}	99.44
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.43
d1rroa_	108	Oncomodulin {Rat (Rattus norvegicus) [TaxId: 10116	99.43
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.41
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.4
d2scpa_	174	Sarcoplasmic calcium-binding protein {Sandworm (Ne	99.39
d2opoa1	81	Polcalcin Che a 3 {Pigweed (Chenopodium album) [Ta	99.39
d1xo5a_	180	Calcium- and integrin-binding protein, CIB {Human	99.38
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.37
d2zkmx1	170	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.33
d1wlza1	83	DJ-1-binding protein, DJBP {Human (Homo sapiens) [	99.32
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.32
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.32
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.32
d1wdcb_	142	Myosin Essential Chain {Bay scallop (Aequipecten i	99.29
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.28
d1jc2a_	75	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	99.27
d1fw4a_	65	Calmodulin {Cow (Bos taurus) [TaxId: 9913]}	99.27
d1lkja_	146	Calmodulin {Baker's yeast (Saccharomyces cerevisia	99.25
d2opoa1	81	Polcalcin Che a 3 {Pigweed (Chenopodium album) [Ta	99.25
d1c7va_	68	Calcium vector protein {Amphioxus (Branchiostoma l	99.25
d1oqpa_	77	Caltractin (centrin 2) {Green algae (Chlamydomonas	99.24
d1qx2a_	76	Calbindin D9K {Cow (Bos taurus) [TaxId: 9913]}	99.24
d1tiza_	67	Calmodulin-related protein T21P5.17 {Thale cress (	99.24
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.24
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.23
d1fi5a_	81	Troponin C {Chicken (Gallus gallus), cardiac isofo	99.22
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.22
d1dtla_	156	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	99.22
d2zfda1	183	Calcineurin B-like protein 2 {Thale cress (Arabido	99.21
d1wdcc_	152	Myosin Regulatory Chain {Bay scallop (Aequipecten	99.2
d1auib_	165	Calcineurin regulatory subunit (B-chain) {Human (H	99.19
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.17
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.16
d1m45a_	146	Myosin Light Chain Mlc1p {Baker's yeast (Saccharom	99.16
d2fcea1	61	Calmodulin {Cow (Bos taurus) [TaxId: 9913]}	99.15
d1avsa_	81	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	99.14
d1topa_	162	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	99.11
d2pq3a1	73	Calmodulin {Rattus norvegicus [TaxId: 10116]}	99.1
d1cb1a_	78	Calbindin D9K {Pig (Sus scrofa) [TaxId: 9823]}	99.1
d2mysb_	145	Myosin Essential Chain {Chicken (Gallus gallus) [T	99.1
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.1
d1ggwa_	140	Cdc4p {Fission yeast (Schizosaccharomyces pombe) [	99.09
d1zfsa1	93	Calcyclin (S100) {Rat (Rattus norvegicus), s100a1	99.08
d1c07a_	95	Eps15 {Human (Homo sapiens) [TaxId: 9606]}	99.08
d1wrka1	82	Troponin C {Human (Homo sapiens), cardiac isoform	99.07
d1f54a_	77	Calmodulin {Baker's yeast (Saccharomyces cerevisia	99.07
d3c1va1	93	Calcyclin (S100) {Human (Homo sapiens), s100a4 [Ta	99.07
d1snla_	99	Nucleobindin 1 (CALNUC) {Human (Homo sapiens) [Tax	99.06
d1s6ia_	182	Calcium-dependent protein kinase sk5 CLD {Soybean	99.06
d1fi6a_	92	Reps1 {Mouse (Mus musculus) [TaxId: 10090]}	99.03
d1yuta1	98	Calcyclin (S100) {Human (Homo sapiens), s100a13 [T	99.02
d1a4pa_	92	Calcyclin (S100) {Human (Homo sapiens), P11 s100a1	99.02
d1s6ja_	87	Calcium-dependent protein kinase sk5 CLD {Soybean	99.01
d1ksoa_	93	Calcyclin (S100) {Human (Homo sapiens), s100a3 [Ta	99.01
d1qx2a_	76	Calbindin D9K {Cow (Bos taurus) [TaxId: 9913]}	99.0
d1w7jb1	139	Myosin Essential Chain {Human (Homo sapiens) [TaxI	98.97
d1k8ua_	89	Calcyclin (S100) {Human (Homo sapiens), s100a6 [Ta	98.97
d1xk4a1	87	Calcyclin (S100) {Human (Homo sapiens), calgranuli	98.92
d1ij5a_	321	Cbp40 (plasmodial specific CaII-binding protein LA	98.91
d2sasa_	185	Sarcoplasmic calcium-binding protein {Amphioxus (B	98.9
d1wlza1	83	DJ-1-binding protein, DJBP {Human (Homo sapiens) [	98.89
d1qjta_	99	Eps15 {Mouse (Mus musculus) [TaxId: 10090]}	98.89
d1snla_	99	Nucleobindin 1 (CALNUC) {Human (Homo sapiens) [Tax	98.88
d1nyaa_	176	Calerythrin {Saccharopolyspora erythraea [TaxId: 1	98.87
d1zfsa1	93	Calcyclin (S100) {Rat (Rattus norvegicus), s100a1	98.87
d1qv0a_	189	Calcium-regulated photoprotein {Hydrozoa (Obelia l	98.86
d1e8aa_	87	Calcyclin (S100) {Human (Homo sapiens), calgranuli	98.86
d2jxca1	95	Eps15 {Human (Homo sapiens) [TaxId: 9606]}	98.85
d2zkmx1	170	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	98.85
d3c1va1	93	Calcyclin (S100) {Human (Homo sapiens), s100a4 [Ta	98.84
d1c07a_	95	Eps15 {Human (Homo sapiens) [TaxId: 9606]}	98.83
d1cb1a_	78	Calbindin D9K {Pig (Sus scrofa) [TaxId: 9823]}	98.82
d1a4pa_	92	Calcyclin (S100) {Human (Homo sapiens), P11 s100a1	98.82
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.79
d1iq3a_	110	Pob1 {Human (Homo sapiens) [TaxId: 9606]}	98.78
d1psra_	100	Calcyclin (S100) {Human (Homo sapiens), psoriasin	98.77
d1ksoa_	93	Calcyclin (S100) {Human (Homo sapiens), s100a3 [Ta	98.76
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.75
d1fi6a_	92	Reps1 {Mouse (Mus musculus) [TaxId: 10090]}	98.75
d1yuta1	98	Calcyclin (S100) {Human (Homo sapiens), s100a13 [T	98.75
d1uhka1	187	Calcium-regulated photoprotein {Jellyfish (Aequore	98.74
d1xk4a1	87	Calcyclin (S100) {Human (Homo sapiens), calgranuli	98.67
d1qjta_	99	Eps15 {Mouse (Mus musculus) [TaxId: 10090]}	98.64
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.61
d2hf5a1	33	Troponin C {Human (Homo sapiens), cardiac isoform	98.6
d1k8ua_	89	Calcyclin (S100) {Human (Homo sapiens), s100a6 [Ta	98.6
d2jxca1	95	Eps15 {Human (Homo sapiens) [TaxId: 9606]}	98.55
d3cr5x1	90	Calcyclin (S100) {Cow (Bos taurus), s100b [TaxId:	98.54
d1psra_	100	Calcyclin (S100) {Human (Homo sapiens), psoriasin	98.54
d1iq3a_	110	Pob1 {Human (Homo sapiens) [TaxId: 9606]}	98.5
d1e8aa_	87	Calcyclin (S100) {Human (Homo sapiens), calgranuli	98.49
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.44
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.42
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.41
d1qlsa_	95	Calcyclin (S100) {Pig (Sus scrofa), calgizzarin s1	98.38
d1j55a_	94	Calcyclin (S100) {Human (Homo sapiens), s100p [Tax	98.27
d2hf5a1	33	Troponin C {Human (Homo sapiens), cardiac isoform	98.23
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.21
d3cr5x1	90	Calcyclin (S100) {Cow (Bos taurus), s100b [TaxId:	98.21
d1xk4c1	83	Calcyclin (S100) {Human (Homo sapiens), s100a9 (mr	98.18
d1ctda_	34	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	98.16
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.15
d1ctda_	34	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	98.1
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.09
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.04
d1qlsa_	95	Calcyclin (S100) {Pig (Sus scrofa), calgizzarin s1	97.97
d1tuza_	118	Diacylglycerol kinase alpha, N-terminal domain {Hu	97.84
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.81
d1j55a_	94	Calcyclin (S100) {Human (Homo sapiens), s100p [Tax	97.79
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.75
d1xk4c1	83	Calcyclin (S100) {Human (Homo sapiens), s100a9 (mr	97.74
d1tuza_	118	Diacylglycerol kinase alpha, N-terminal domain {Hu	97.71
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.44
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.24
d1qasa1	94	Phosphoinositide-specific phospholipase C, isozyme	96.65
d1sraa_	151	C-terminal (EC) domain of BM-40/SPARC/osteonectin	96.38
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.09
d1sraa_	151	C-terminal (EC) domain of BM-40/SPARC/osteonectin	95.82
d1qasa1	94	Phosphoinositide-specific phospholipase C, isozyme	95.2
d1h8ba_	73	alpha-Actinin {Human (Homo sapiens) [TaxId: 9606]}	93.77
d1j7qa_	86	Calcium vector protein {Amphioxus (Branchiostoma l	93.03
d2cclb1	59	Endo-1,4-beta-xylanase Y {Clostridium thermocellum	92.9
d1pula1	103	Hypothetical protein c32e8.3 {Caenorhabditis elega	92.25
d1wlma1	138	Protein cgi-38 {Mouse (Mus musculus) [TaxId: 10090	90.91
d1dava_	71	Cellulosome endoglucanase SS {Clostridium thermoce	86.66
d1eg3a2	97	Dystrophin {Human (Homo sapiens) [TaxId: 9606]}	85.24
d2cclb1	59	Endo-1,4-beta-xylanase Y {Clostridium thermocellum	83.6

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.86  E-value=1.7e-23  Score=194.34  Aligned_cols=150  Identities=25%  Similarity=0.335  Sum_probs=112.0

Q ss_pred             CCCCccCeeEEeeccccCCCCCcCCCCCCCCCCCcCCCCCcc-CCCCccCCCCCCCCCCcccEEeccCC------CcCcc
Q psy2947           4 PAKNNEGFQATRNKQGVGFSRRSSFKNKNSTPQTACQRNCSL-EVGGICSHIWIPQYFSHAFLLSLSYT------PIGRR   76 (441)
Q Consensus         4 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~c~~-~~~~~c~~~~~~~~l~~L~~l~l~~n------~i~~~   76 (441)
                      -+.+.|.+||++||+++..++  .+.+|....  .|   |.| |.||.|...+.   ..+++.|+|++|      .||+.
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~--~l~sW~~~~--d~---C~~~w~gv~C~~~~~---~~~v~~L~L~~~~l~g~~~lp~~   71 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPT--TLSSWLPTT--DC---CNRTWLGVLCDTDTQ---TYRVNNLDLSGLNLPKPYPIPSS   71 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG--GGTTCCTTS--CT---TTTCSTTEEECCSSS---CCCEEEEEEECCCCSSCEECCGG
T ss_pred             CCCHHHHHHHHHHHHHCCCCC--cCCCCCCCC--CC---CCCcCCCeEEeCCCC---cEEEEEEECCCCCCCCCCCCChH
Confidence            467889999999999997664  467786422  34   554 68999986443   356888888877      36778


Q ss_pred             cCCCCCCCEEEccC-CCCC-cCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEccCCCC-CccchhhcCCCC
Q psy2947          77 IFKCDTVEVLSLKS-NSLT-SLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLL-DALPGFLLSMPQ  153 (441)
Q Consensus        77 ~~~l~~L~~L~l~~-n~l~-~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l-~~lp~~~~~l~~  153 (441)
                      ++++++|++|+|++ |+++ .+|+.|+++++|++|++++|++. +..|..+..+.+|++++++.|.+ ..+|..+..++.
T Consensus        72 l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~-~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~  150 (313)
T d1ogqa_          72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS-GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN  150 (313)
T ss_dssp             GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE-EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred             HhcCccccccccccccccccccccccccccccchhhhcccccc-ccccccccchhhhcccccccccccccCchhhccCcc
Confidence            88888888888885 7777 78888888888888888888887 55555567777777777777766 456666777777


Q ss_pred             CCEEEccCCcC
Q psy2947         154 LDTVYRHGNHN  164 (441)
Q Consensus       154 L~~L~l~~N~~  164 (441)
                      |+.+++++|.+
T Consensus       151 L~~l~l~~n~l  161 (313)
T d1ogqa_         151 LVGITFDGNRI  161 (313)
T ss_dssp             CCEEECCSSCC
T ss_pred             cceeecccccc
Confidence            77777777764

>d1wdcb_ a.39.1.5 (B:) Myosin Essential Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Essential Chain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=99.83  E-value=3.8e-20  Score=150.39  Aligned_cols=138  Identities=25%  Similarity=0.436  Sum_probs=116.1

Q ss_pred             ecccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCHHHHH
Q psy2947         260 TFKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVV  337 (441)
Q Consensus       260 l~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~  337 (441)
                      ++++++++++++|..+|.+  |.| +..++..+++.++..++..++..++.+++|.|++++|..++...           
T Consensus         1 L~~~qi~e~~~~F~~~D~d~~G~I-~~~el~~~l~~lg~~~~~~el~~~~~~~~~~i~~~eF~~~~~~~-----------   68 (142)
T d1wdcb_           1 LPQKQIQEMKEAFSMIDVDRDGFV-SKEDIKAISEQLGRAPDDKELTAMLKEAPGPLNFTMFLSIFSDK-----------   68 (142)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCSSSC-CHHHHHHHHHHHSSCCCHHHHHHHHTTSSSCCCHHHHHHHHHHH-----------
T ss_pred             CCHHHHHHHHHHHHHHcCCCCCcC-ChHHHHHHHHHhhcCCCHHHHHHHHHhccCcccccccccccccc-----------
Confidence            3578899999999999876  888 89999999999998888888888887767777777776666533           


Q ss_pred             HHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Q psy2947         338 DAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREAN  417 (441)
Q Consensus       338 ~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d  417 (441)
                                                .......+.++.+|+.+|.+++|+|+.+||++++..+|.++++++++++++.+|
T Consensus        69 --------------------------~~~~~~~~~l~~aF~~~D~d~~G~I~~~el~~~l~~~g~~lt~~e~~~l~~~~d  122 (142)
T d1wdcb_          69 --------------------------LSGTDSEETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNFNKDEMRMTFKEAP  122 (142)
T ss_dssp             --------------------------TCSCCCHHHHHHHHHTTCTTCCSCEEHHHHHHHHHHSSSCCCHHHHHHHHHHCC
T ss_pred             --------------------------ccccchhhhHHHhhhhhcccCCCcccHHHHHHHHHHccccCCHHHHHHHHHHhC
Confidence                                      223333567888999999999999999999999999999999999999999999


Q ss_pred             CCCCCceeHHHHHHHHhcc
Q psy2947         418 VTMNSKVRYEDFVKIACAP  436 (441)
Q Consensus       418 ~d~dg~i~~~ef~~~l~~~  436 (441)
                      .| +|+|+|+||+++|..+
T Consensus       123 ~~-~G~I~y~eF~~~l~~~  140 (142)
T d1wdcb_         123 VE-GGKFDYVKFTAMIKGS  140 (142)
T ss_dssp             EE-TTEECHHHHHHHHHTS
T ss_pred             CC-CCEEcHHHHHHHHhcC
Confidence            87 6999999999998754

>d1lkja_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=1.4e-19  Score=147.86  Aligned_cols=141  Identities=33%  Similarity=0.565  Sum_probs=113.7

Q ss_pred             ecccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCHHHHH
Q psy2947         260 TFKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVV  337 (441)
Q Consensus       260 l~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~  337 (441)
                      ++++++.+++++|..+|.+  |+| +..+++.++...+..                                 .+...+.
T Consensus         4 ls~~~i~~l~~~F~~~D~d~~G~i-~~~e~~~~l~~~g~~---------------------------------~~~~~~~   49 (146)
T d1lkja_           4 LTEEQIAEFKEAFALFDKDNNGSI-SSSELATVMRSLGLS---------------------------------PSEAEVN   49 (146)
T ss_dssp             CCHHHHHHHHHHHHHHCCSSSSEE-EHHHHHHHHHHHTCC---------------------------------CCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCcE-eHHHHHHHHHhcCCC---------------------------------CCHHHHH
Confidence            4566666667777666654  555 566666666555543                                 3445555


Q ss_pred             HHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Q psy2947         338 DAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREAN  417 (441)
Q Consensus       338 ~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d  417 (441)
                      .++..++.++.+.+++++|...+..........+.++.+|+.+|++++|+|+.+||++++..+|..+++++++.+++.+|
T Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aF~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d  129 (146)
T d1lkja_          50 DLMNEIDVDGNHQIEFSEFLALMSRQLKSNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDDMLREVS  129 (146)
T ss_dssp             HHHHHHCSSSCCEEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHCSSSSCEEEHHHHHHHHHHHTCSCCHHHHHHHHHHHC
T ss_pred             HHHHHhccCCcccccHHHHHHHHHHhhccccHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCcccHHHHHHHHHhcc
Confidence            66667888899999999999888776555555678999999999999999999999999999999999999999999999


Q ss_pred             CCCCCceeHHHHHHHHhc
Q psy2947         418 VTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       418 ~d~dg~i~~~ef~~~l~~  435 (441)
                       |++|+|+|+||+++|.+
T Consensus       130 -d~dG~I~~~eF~~~m~k  146 (146)
T d1lkja_         130 -DGSGEINIQQFAALLSK  146 (146)
T ss_dssp             -CSSSEEEHHHHHHHHCC
T ss_pred             -CCCCeEeHHHHHHHhCC
Confidence             99999999999999864

>d1exra_ a.39.1.5 (A:) Calmodulin {Ciliate (Paramecium tetraurelia) [TaxId: 5888]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Ciliate (Paramecium tetraurelia) [TaxId: 5888]

Probab=99.81  E-value=1.6e-19  Score=147.54  Aligned_cols=126  Identities=30%  Similarity=0.581  Sum_probs=104.9

Q ss_pred             HhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCc
Q psy2947         308 AEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGT  387 (441)
Q Consensus       308 ~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~  387 (441)
                      .+++|.|+++||..++.... ...+...+..+|+.+|.+++|.|+++||..++..........+.++.+|+.+|.+++|.
T Consensus        20 ~~~~G~Is~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~   98 (146)
T d1exra_          20 KDGDGTITTKELGTVMRSLG-QNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKEQDSEEELIEAFKVFDRDGNGL   98 (146)
T ss_dssp             TTCSSEECHHHHHHHHHHHT-CCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCSSC
T ss_pred             CCCCCeECHHHHHHHHHhcC-CCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhccChHHHHHHHHHHhCCCCCCc
Confidence            45566666666666665442 33566778888899999999999999999987654333333568899999999999999


Q ss_pred             ccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         388 VPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       388 is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      |+.+||+.++..+|..+++++++.+|+.+|.|+||.|+|+||+++|.
T Consensus        99 i~~~e~~~~l~~~~~~~~~~~~~~i~~~~D~d~dG~i~~~eF~~~l~  145 (146)
T d1exra_          99 ISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYEEFVRMMV  145 (146)
T ss_dssp             BCHHHHHHHHHHTTCCCCHHHHHHHHHHHCSSSSSSBCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhhcCCHHHHHHHHHHhCCCCCCeEeHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999885

>d1ggwa_ a.39.1.5 (A:) Cdc4p {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Cdc4p
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.81  E-value=8.6e-20  Score=147.82  Aligned_cols=135  Identities=27%  Similarity=0.495  Sum_probs=112.3

Q ss_pred             chHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHH
Q psy2947         264 PYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFK  341 (441)
Q Consensus       264 ~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~  341 (441)
                      +...++++|..+|.+  |.| +..+++.+++.+|..++..++..++.+.+|.|++++|..++......            
T Consensus         3 ~~~~fke~F~~~D~d~dG~I-~~~el~~~l~~lg~~~t~~ei~~~~~~~~~~i~~~eF~~~~~~~~~~------------   69 (140)
T d1ggwa_           3 DDSPYKQAFSLFDRHGTGRI-PKTSIGDLLRACGQNPTLAEITEIESTLPAEVDMEQFLQVLNRPNGF------------   69 (140)
T ss_dssp             CCTTTHHHHHHTCSSSSSEE-CHHHHHHHHHHTSCCCCHHHHHHHHTTSCSSEEHHHHHHHHCTTSSS------------
T ss_pred             cHHHHHHHHHHHCCCCCCeE-CHHHHHHHHHHHHhhhHHHhhhhhhccccccccchhhhhhhhhhhhc------------
Confidence            446788999999975  888 89999999999999888888888777777777777777766533211            


Q ss_pred             hhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCC
Q psy2947         342 AADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMN  421 (441)
Q Consensus       342 ~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~d  421 (441)
                                             ......+.+..+|+.+|.+++|+|+.+||+++|..+|.++++++++.+++.+|.+ +
T Consensus        70 -----------------------~~~~~~~~l~~aF~~~D~d~~G~I~~~el~~~l~~~g~~lt~~e~~~l~~~~d~~-d  125 (140)
T d1ggwa_          70 -----------------------DMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPVK-D  125 (140)
T ss_dssp             -----------------------SSSCCHHHHHHHHHTTCSSCSSCCCHHHHHHHHHHHHSCSCHHHHHHHHHHTTCS-S
T ss_pred             -----------------------chhhHHHHHHHHHHHHhccCCCcchHHHHHHHHHHcCCCCCHHHHHHHHHhhCCC-C
Confidence                                   1122246788899999999999999999999999999999999999999999988 9


Q ss_pred             CceeHHHHHHHHhc
Q psy2947         422 SKVRYEDFVKIACA  435 (441)
Q Consensus       422 g~i~~~ef~~~l~~  435 (441)
                      |.|+|+||++.|..
T Consensus       126 G~I~y~eF~~~m~s  139 (140)
T d1ggwa_         126 GMVNYHDFVQMILA  139 (140)
T ss_dssp             CCSTTTHHHHHHHC
T ss_pred             CEEeHHHHHHHHhc
Confidence            99999999998864

>d1wdcc_ a.39.1.5 (C:) Myosin Regulatory Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Regulatory Chain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=99.81  E-value=1.1e-19  Score=149.40  Aligned_cols=144  Identities=28%  Similarity=0.477  Sum_probs=115.0

Q ss_pred             ecccchHHHHHhhhccc----cCCCccCHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCHHH
Q psy2947         260 TFKTPYLEFRECFFLFA----RNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKE  335 (441)
Q Consensus       260 l~~~~~~~l~~~f~~~d----~~G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~  335 (441)
                      ++++++.+++++|..+|    .+|.| +..+++.+++.+|..++..++..+.                            
T Consensus         1 Ls~eqi~~l~~~F~~fD~~~~~dG~I-~~~el~~~l~~lG~~~t~~e~~~~~----------------------------   51 (152)
T d1wdcc_           1 LSQDEIDDLKDVFELFDFWDGRDGAV-DAFKLGDVCRCLGINPRNEDVFAVG----------------------------   51 (152)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTCSSSCE-EGGGHHHHHHHTTCCCCHHHHHHTT----------------------------
T ss_pred             CCHHHHHHHHHHHHHHCcCCCCCCeE-CHHHHHHHHHHhccCccHhhhhhhh----------------------------
Confidence            35677888889998887    34788 7888988888888777666555432                            


Q ss_pred             HHHHHHhhcCCCCCcccHHHHHHHHHhhcc-CCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy2947         336 VVDAFKAADTTKSGKLSFPDFLKVMHTHSK-AEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFR  414 (441)
Q Consensus       336 ~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~-~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~  414 (441)
                            ..|.+++|.|+++||..++..... .....+.+..+|+.+|.+++|+|+.+||+++|..+|.++++++++.+++
T Consensus        52 ------~~~~~~~~~i~~~eFl~~~~~~~~~~~~~~~~l~~aF~~~D~~~~G~I~~~el~~~l~~~g~~ls~~e~~~l~~  125 (152)
T d1wdcc_          52 ------GTHKMGEKSLPFEEFLPAYEGLMDCEQGTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIK  125 (152)
T ss_dssp             ------CCSSTTSCEECHHHHHHHHHHHTTSCCCCHHHHHHHHHTTCSSSSSEEEHHHHHHHHHHSSSCCCHHHHHHHHH
T ss_pred             ------hhhccccccccccccccccccccccchhHHHhhhhhhhccccccCccchHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence                  245677788888888887765533 3344678999999999999999999999999999999999999999999


Q ss_pred             HhCC--CCCCceeHHHHHHHHhc-cCC
Q psy2947         415 EANV--TMNSKVRYEDFVKIACA-PVP  438 (441)
Q Consensus       415 ~~d~--d~dg~i~~~ef~~~l~~-~~~  438 (441)
                      .+|.  |++|.|+|+||++.|.. ++|
T Consensus       126 ~~d~~~d~~G~I~y~eF~~~~~~~p~p  152 (152)
T d1wdcc_         126 LTDLQEDLEGNVKYEDFVKKVMAGPYP  152 (152)
T ss_dssp             HHTCCCCTTSEEEHHHHHHHHHHCSCC
T ss_pred             HhccCCCCCCEEEHHHHHHHHhcCCCC
Confidence            9985  45689999999988754 444

>d1y1xa_ a.39.1.8 (A:) Programmed cell death 6 protein-like protein {Leishmania major [TaxId: 5664]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Programmed cell death 6 protein-like protein
species: Leishmania major [TaxId: 5664]

Probab=99.80  E-value=2.1e-18  Score=146.04  Aligned_cols=156  Identities=17%  Similarity=0.284  Sum_probs=136.5

Q ss_pred             cchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHH----hCCCcccHHHHHHHHHhhcCCCCCHHHH
Q psy2947         263 TPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLA----EKGGKLSFPDFLKVMHTHSKAEDIPKEV  336 (441)
Q Consensus       263 ~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~~~~~~~~~~  336 (441)
                      ++.++++++|..+|.+  |+| +..|+..+++.++...+..++..++.    +++|.|+++||...+...       ..+
T Consensus        15 ~~~~~l~~~F~~~D~d~dG~I-s~~El~~~l~~l~~~~s~~~~~~l~~~~d~d~~~~i~~~ef~~~~~~~-------~~~   86 (182)
T d1y1xa_          15 NDNQELMEWFRAVDTDGSGAI-SVPELNAALSSAGVPFSLATTEKLLHMYDKNHSGEITFDEFKDLHHFI-------LSM   86 (182)
T ss_dssp             CTTSCHHHHHHHHCTTCSSSB-CHHHHHHHHCBTTBCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHH-------HHH
T ss_pred             CcHHHHHHHHHHHcCCCcCCC-CHHHHHHHHHHhcccCchhhhhhhhccccccccccccccccccccccc-------ccc
Confidence            4456899999999986  889 89999999999999999999888775    689999999999988643       578


Q ss_pred             HHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q psy2947         337 VDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREA  416 (441)
Q Consensus       337 ~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~  416 (441)
                      ..+|+.+|.+++|.|+.+||.+++... +.....+++..+|+.+|.|++|.|+++||.+++..+      ..+..+|+.+
T Consensus        87 ~~~F~~~D~~~~g~I~~~el~~~l~~~-g~~ls~~e~~~i~~~~d~~~dg~I~~~eF~~~~~~l------~~~~~~F~~~  159 (182)
T d1y1xa_          87 REGFRKRDSSGDGRLDSNEVRAALLSS-GYQVSEQTFQALMRKFDRQRRGSLGFDDYVELSIFV------CRVRNVFAFY  159 (182)
T ss_dssp             HHHHHHHCTTSSSCBCHHHHHHHHHTT-SCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHH------HHHHHHHHHH
T ss_pred             ccchhccccccchhhhhHHHHHHHHHh-CCchhHHHHHHHHhhcccCCCCCcCHHHHHHHHHHH------HHHHHHHHHh
Confidence            899999999999999999999999876 455567899999999999999999999999999764      4577899999


Q ss_pred             CCCCCCce--eHHHHHHHH
Q psy2947         417 NVTMNSKV--RYEDFVKIA  433 (441)
Q Consensus       417 d~d~dg~i--~~~ef~~~l  433 (441)
                      |.+++|.|  +|++|+..-
T Consensus       160 D~~~~G~is~~~~~f~~~~  178 (182)
T d1y1xa_         160 DRERTGQVTFTFDTFIGGS  178 (182)
T ss_dssp             CTTCCSEEEEEHHHHHHHH
T ss_pred             CCCCCCcEEeeHHHHHHHH
Confidence            99999995  789999754

>d1hqva_ a.39.1.8 (A:) Apoptosis-linked protein alg-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Apoptosis-linked protein alg-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=3.9e-18  Score=144.23  Aligned_cols=157  Identities=13%  Similarity=0.188  Sum_probs=134.6

Q ss_pred             ccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCC-cCHHHHHHHHH----hCCCcccHHHHHHHHHhhcCCCCCHH
Q psy2947         262 KTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMS-PTIAELKKYLA----EKGGKLSFPDFLKVMHTHSKAEDIPK  334 (441)
Q Consensus       262 ~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~-~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~~~~~~~~  334 (441)
                      ..+.+.+..+|..+|.+  |+| +.+|+..+++.++.. .+..++..++.    +++|.|+++||+.++...       .
T Consensus        15 ~~~~~~L~~iF~~~D~d~~G~I-s~~E~~~~l~~~~~~~~~~~~~~~l~~~~D~d~~g~i~~~EFl~~~~~~-------~   86 (181)
T d1hqva_          15 LPDQSFLWNVFQRVDKDRSGVI-SDNELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYI-------T   86 (181)
T ss_dssp             CSCHHHHHHHHHHHCTTCCSSB-CHHHHHHHCCCSSSSCCCHHHHHHHHHHHCCSSSSSBCHHHHHHHHHHH-------H
T ss_pred             CccHHHHHHHHHHHcCCCCCcC-cHHHHHHHHHHcCCCcccHHHHHHHhhccccccccchhhhHHHhhhhhc-------c
Confidence            45668899999999987  889 899999999887754 56677766664    678999999999998754       5


Q ss_pred             HHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy2947         335 EVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFR  414 (441)
Q Consensus       335 ~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~  414 (441)
                      .++.+|+.+|.+++|.|+.+||++++... ......+.+..+++.+|.+++|.|+++||++++..+      +.+..+|+
T Consensus        87 ~~~~~f~~~D~~~~G~i~~~el~~~l~~~-~~~l~~e~~~~~~~~~d~~~dg~Is~~eF~~~~~~l------~~l~~~F~  159 (181)
T d1hqva_          87 DWQNVFRTYDRDNSGMIDKNELKQALSGF-GYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVL------QRLTDIFR  159 (181)
T ss_dssp             HHHHHHHHHCTTCCSSBCHHHHHHHHHHH-TBCCCHHHHHHHHHHHCSSCSSCBCHHHHHHHHHHH------HHHHHHHH
T ss_pred             ccccccccccccccchhhhHHHHHHHHHc-CCcchhHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH------HHHHHHHH
Confidence            68899999999999999999999999876 445667889999999999999999999999998654      55788999


Q ss_pred             HhCCCCCCce--eHHHHHHHH
Q psy2947         415 EANVTMNSKV--RYEDFVKIA  433 (441)
Q Consensus       415 ~~d~d~dg~i--~~~ef~~~l  433 (441)
                      .+|++++|.|  +++||+..|
T Consensus       160 ~~D~~~dG~i~~~~~ef~~~~  180 (181)
T d1hqva_         160 RYDTDQDGWIQVSYEQYLSMV  180 (181)
T ss_dssp             HHCTTCSSCCCCCHHHHHHHH
T ss_pred             HhCCCCCCCEEecHHHHHHHh
Confidence            9999999965  799999876

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.79  E-value=3.4e-19  Score=152.65  Aligned_cols=168  Identities=20%  Similarity=0.236  Sum_probs=129.5

Q ss_pred             CCCCCccCC-CCccCCC---CCCCCC-CcccEEeccCCCcC-----cccCCCCCCCEEEccCCCCCcCCcC-ccCCCCCc
Q psy2947          39 CQRNCSLEV-GGICSHI---WIPQYF-SHAFLLSLSYTPIG-----RRIFKCDTVEVLSLKSNSLTSLPPD-IGRLTNLR  107 (441)
Q Consensus        39 C~~~c~~~~-~~~c~~~---~~~~~l-~~L~~l~l~~n~i~-----~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~  107 (441)
                      ||..|.|.. .+.|++.   .+|..+ ++++.|+|++|.|.     ..+..+++|+.|+|++|.+..++.. +..+++|+
T Consensus         2 CP~~C~C~~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~   81 (192)
T d1w8aa_           2 CPAMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ   81 (192)
T ss_dssp             CCTTSEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred             cCCCCEEcCCEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccc
Confidence            999999954 3779864   455554 58999999999663     3446789999999999999976655 99999999


Q ss_pred             EEEccCCcCCCCCCch-hhhcCCCCCEEEccCCCCCccc-hhhcCCCCCCEEEccCCcCccCcccccccccccccccccc
Q psy2947         108 VLCLTDNCLQNASIPF-TLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTS  185 (441)
Q Consensus       108 ~L~l~~n~l~~~~~p~-~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~  185 (441)
                      +|++++|+|+  .+|. .|.++++|++|+|++|+|+.+| ..|..+++|++|+|++|++.+.+.+.|+...         
T Consensus        82 ~L~Ls~N~l~--~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~---------  150 (192)
T d1w8aa_          82 ELQLGENKIK--EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEW---------  150 (192)
T ss_dssp             EEECCSCCCC--EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHH---------
T ss_pred             eeeecccccc--ccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhhh---------
Confidence            9999999998  6654 5799999999999999999997 6788999999999999999888876553221         


Q ss_pred             hhHHH-Hhhccc-ccCCchhhhhhhhcccccccccCCC
Q psy2947         186 TRDEV-LRKQKK-LHQPSRLQDLAVQSVIASKENFFEP  221 (441)
Q Consensus       186 ~~~~~-l~~~~~-~~~p~~l~~l~~l~~l~l~~n~~~~  221 (441)
                       +... +..+.+ ...|..   +..+..++++.|.+.+
T Consensus       151 -l~~~~l~~~~~~c~~p~~---l~~~~l~~L~~n~l~C  184 (192)
T d1w8aa_         151 -LRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEFKC  184 (192)
T ss_dssp             -HHHHCCSGGGCBBCSSTT---TTTSBGGGSCTTTCCC
T ss_pred             -hhhhcccCCCeEeCCChh---hcCCEeeecCHhhCcC
Confidence             1112 333333 345544   4556677788777665

>d2obha1 a.39.1.5 (A:26-166) Calmodulin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=6.6e-19  Score=142.92  Aligned_cols=125  Identities=27%  Similarity=0.458  Sum_probs=102.7

Q ss_pred             HhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCc
Q psy2947         308 AEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGT  387 (441)
Q Consensus       308 ~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~  387 (441)
                      .+++|.|+++||..++... ....+...+..++..+|.+++|.|++.||...+..........+.++.+|..+|.+++|.
T Consensus        17 ~~~~G~Is~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~f~~~d~~~~G~   95 (141)
T d2obha1          17 ADGTGTIDVKELKVAMRAL-GFEPKKEEIKKMISEIDKEGTGKMNFGDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGK   95 (141)
T ss_dssp             TTCCSEEEGGGHHHHHHHT-TCCCCHHHHHHHHHHHTTTCCSEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSS
T ss_pred             CCCCCeEeHHHHHHHHHhc-CCchhHHHHHHHHHhhccCCCCeechHHHHHHHHHHHhhhccHHHHHHHHHHhcccCCCC
Confidence            3455555666655555543 334566777778888999999999999999887655433333567899999999999999


Q ss_pred             ccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy2947         388 VPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA  433 (441)
Q Consensus       388 is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l  433 (441)
                      |+.+||+.++..+|.+++++++..+|+.+|.|++|.|+|+||+++|
T Consensus        96 i~~~el~~~l~~~g~~l~~~e~~~l~~~~D~d~dG~i~~~EF~~~m  141 (141)
T d2obha1          96 ISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQEFLRIM  141 (141)
T ss_dssp             BCHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTSSSSBCHHHHHHHH
T ss_pred             ccHHHHHHHHHHhCCCCCHHHHHHHHHHHCCCCCCCEeHHHHHHhC
Confidence            9999999999999999999999999999999999999999999986

>d2mysb_ a.39.1.5 (B:) Myosin Essential Chain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Essential Chain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.78  E-value=9.3e-19  Score=142.61  Aligned_cols=138  Identities=22%  Similarity=0.395  Sum_probs=107.2

Q ss_pred             cccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcC-HHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCHHHHH
Q psy2947         261 FKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPT-IAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVV  337 (441)
Q Consensus       261 ~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~-~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~  337 (441)
                      +++++.+++++|..+|.+  |+| +.++++.+++.++..++ ...+..++                              
T Consensus         2 ~~~qi~el~e~F~~~D~~~~G~I-~~~e~~~~l~~lg~~~~~~~~~~~~~------------------------------   50 (145)
T d2mysb_           2 DETEIEDFKEAFTVIDQNADGII-DKDDLRETFAAMGRLNVKNEELDAMI------------------------------   50 (145)
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCC-CHHHHHHHHHHhCCCcchHHHHHHHH------------------------------
Confidence            466788888888888875  778 78888888888774432 22233333                              


Q ss_pred             HHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Q psy2947         338 DAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREAN  417 (441)
Q Consensus       338 ~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d  417 (441)
                             .+++|.|++++|..++..........+.+..+|+.+|.+++|+|+.+||+++++.+|.++++++++.+++.+|
T Consensus        51 -------~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~aF~~fD~~~~g~I~~~el~~~l~~~g~~ls~~e~~~~~~~~d  123 (145)
T d2mysb_          51 -------KEASGPINFTVFLTMFGEKLKGADPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKNMWAAFP  123 (145)
T ss_pred             -------HhccCceeechhhhhhhhcccccchHHHHHHHHHhhhhcccchhhHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence                   3445555555555555443333344567889999999999999999999999999999999999999999999


Q ss_pred             CCCCCceeHHHHHHHHhcc
Q psy2947         418 VTMNSKVRYEDFVKIACAP  436 (441)
Q Consensus       418 ~d~dg~i~~~ef~~~l~~~  436 (441)
                      .|++|.|+|++|+++|.+.
T Consensus       124 ~d~dg~I~y~eF~~~l~~~  142 (145)
T d2mysb_         124 PDVAGNVDYKNICYVITHG  142 (145)
T ss_pred             CCCCCeEeHHHHHHHhccC
Confidence            9999999999999999765

>d1alva_ a.39.1.8 (A:) Calpain small (regulatory) subunit (domain VI) {Pig (Sus scrofa) [TaxId: 9823]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Calpain small (regulatory) subunit (domain VI)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.78  E-value=2.8e-18  Score=144.14  Aligned_cols=156  Identities=14%  Similarity=0.220  Sum_probs=127.0

Q ss_pred             cchHHHHHhhhccccC-CCccCHHHHHHHHHHcCCC--------cCHHHHHHHH----HhCCCcccHHHHHHHHHhhcCC
Q psy2947         263 TPYLEFRECFFLFARN-GTIKTLDELSVIMRSLGMS--------PTIAELKKYL----AEKGGKLSFPDFLKVMHTHSKA  329 (441)
Q Consensus       263 ~~~~~l~~~f~~~d~~-G~i~~~~el~~~~~~~~~~--------~~~~~~~~~~----~~~~g~i~~~ef~~~~~~~~~~  329 (441)
                      +++++++++|..+|.+ |.| +..|++.+++.++..        .....+..++    .+++|.|+++||..++...   
T Consensus         1 ee~~~~r~~F~~~d~~dg~I-~~~EL~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~d~d~~g~i~~~ef~~~~~~~---   76 (173)
T d1alva_           1 EEVRQFRRLFAQLAGDDMEV-SATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNI---   76 (173)
T ss_dssp             CHHHHHHHHHHHHHGGGTSB-CHHHHHHHHHHHHHTCSTTCCSCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHH---
T ss_pred             ChHHHHHHHHHHHcCCCCcC-CHHHHHHHHHHhCCCcchhhhccCCHHHHHHHHHHhccCCCCcccchhhhhhhhhh---
Confidence            3678999999999964 999 899999999887533        2345555555    3789999999999988644   


Q ss_pred             CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHH
Q psy2947         330 EDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEV  409 (441)
Q Consensus       330 ~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~  409 (441)
                          ..+..+|+.||.|++|.|+..||..++.... ....++. ...|..+|.|++|.|+++||++++..+      +.+
T Consensus        77 ----~~~~~~f~~~D~d~~G~I~~~el~~~L~~~g-~~~~~~~-~~~~~~~d~d~~G~i~~~EF~~~~~~~------~~~  144 (173)
T d1alva_          77 ----KKWQAIYKQFDVDRSGTIGSSELPGAFEAAG-FHLNEHL-YSMIIRRYSDEGGNMDFDNFISCLVRL------DAM  144 (173)
T ss_dssp             ----HHHHHHHHHHCTTCCSSBCTTTHHHHHHHHT-CCCCHHH-HHHHHHHHTCSSSCBCHHHHHHHHHHH------HHH
T ss_pred             ----hHHHHHHHHhccCCCCeecHHHHHHHHHHHH-HhhHHHH-HHHhhccccCCCCeEeHHHHHHHHHHH------HHH
Confidence                5789999999999999999999999998863 3344444 445556777999999999999999664      578


Q ss_pred             HHHHHHhCCCCCCce--eHHHHHHHHh
Q psy2947         410 DQIFREANVTMNSKV--RYEDFVKIAC  434 (441)
Q Consensus       410 ~~l~~~~d~d~dg~i--~~~ef~~~l~  434 (441)
                      ..+|+.+|.|++|.|  +|+||+++..
T Consensus       145 ~~~f~~~D~d~~G~it~~~~efl~~~~  171 (173)
T d1alva_         145 FRAFKSLDKDGTGQIQVNIQEWLQLTM  171 (173)
T ss_dssp             HHHHHHHSSSCCSEEEEEHHHHHHHHH
T ss_pred             HHHHHHhCCCCCCcEEecHHHHHHHHH
Confidence            889999999999987  6899998753

>d2mysc_ a.39.1.5 (C:) Myosin Regulatory Chain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Regulatory Chain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.77  E-value=2.6e-18  Score=140.03  Aligned_cols=135  Identities=28%  Similarity=0.514  Sum_probs=99.5

Q ss_pred             hHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHh
Q psy2947         265 YLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKA  342 (441)
Q Consensus       265 ~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~  342 (441)
                      .++++++|..+|.+  |.| +..|+..+++.++..++..+                                 +..++..
T Consensus         3 ~eelke~F~~~D~d~~G~I-~~~el~~~l~~lg~~~~~~e---------------------------------~~~~~~~   48 (145)
T d2mysc_           3 ADDFKEAFLLFDRTGDAKI-TASQVGDIARALGQNPTNAE---------------------------------INKILGN   48 (145)
T ss_pred             HHHHHHHHHHHcCCCCCeE-CHHHHHHHHHHhhhcchhhh---------------------------------hHHHHHH
Confidence            34556666666654  555 56666666665554444443                                 4444444


Q ss_pred             hc--CCCCCcccHHHHHHHHHhhccC--CCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Q psy2947         343 AD--TTKSGKLSFPDFLKVMHTHSKA--EDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANV  418 (441)
Q Consensus       343 ~D--~d~~g~i~~~ef~~~~~~~~~~--~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~  418 (441)
                      ++  .+++|.|+++||..++......  ....+.+..+|+.+|.+++|+|+.+||++++..+|.+++.++++.+++. +.
T Consensus        49 ~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~l~~aF~~~D~d~~G~I~~~el~~~l~~~g~~~~~~e~~~l~~~-~~  127 (145)
T d2mysc_          49 PSKEEMNAAAITFEEFLPMLQAAANNKDQGTFEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMTEEEVEELMKG-QE  127 (145)
T ss_pred             HhhcccccCccchhHHHHHHhhhhhccccchHHHHHHHHHHhhcCCCCEEcHHHHHHHHHHhCCCCCHHHHHHHHhh-cC
Confidence            43  3457788888888877654322  2335678899999999999999999999999999999999999999975 77


Q ss_pred             CCCCceeHHHHHHHHh
Q psy2947         419 TMNSKVRYEDFVKIAC  434 (441)
Q Consensus       419 d~dg~i~~~ef~~~l~  434 (441)
                      |++|.|+|+||+++|.
T Consensus       128 d~dG~I~y~eF~~~ll  143 (145)
T d2mysc_         128 DSNGCINYEAFVKHIM  143 (145)
T ss_pred             CCCCeEEHHHHHHHHh
Confidence            9999999999999875

>d1hqva_ a.39.1.8 (A:) Apoptosis-linked protein alg-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Apoptosis-linked protein alg-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=5.4e-18  Score=143.38  Aligned_cols=133  Identities=17%  Similarity=0.274  Sum_probs=118.5

Q ss_pred             CHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q psy2947         283 TLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHT  362 (441)
Q Consensus       283 ~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~  362 (441)
                      +.+++..++..++            .+++|.|+.+||..++........+.+.+..+++.+|.|++|.|+++||..++..
T Consensus        17 ~~~~L~~iF~~~D------------~d~~G~Is~~E~~~~l~~~~~~~~~~~~~~~l~~~~D~d~~g~i~~~EFl~~~~~   84 (181)
T d1hqva_          17 DQSFLWNVFQRVD------------KDRSGVISDNELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKY   84 (181)
T ss_dssp             CHHHHHHHHHHHC------------TTCCSSBCHHHHHHHCCCSSSSCCCHHHHHHHHHHHCCSSSSSBCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHc------------CCCCCcCcHHHHHHHHHHcCCCcccHHHHHHHhhccccccccchhhhHHHhhhhh
Confidence            5555666555554            6899999999999999877665667899999999999999999999999998876


Q ss_pred             hccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         363 HSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       363 ~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      .       ..++.+|+.+|++++|.|+.+||++++...+..+++++++.+++.+|.+++|.|+|+||+.++.
T Consensus        85 ~-------~~~~~~f~~~D~~~~G~i~~~el~~~l~~~~~~l~~e~~~~~~~~~d~~~dg~Is~~eF~~~~~  149 (181)
T d1hqva_          85 I-------TDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCI  149 (181)
T ss_dssp             H-------HHHHHHHHHHCTTCCSSBCHHHHHHHHHHHTBCCCHHHHHHHHHHHCSSCSSCBCHHHHHHHHH
T ss_pred             c-------cccccccccccccccchhhhHHHHHHHHHcCCcchhHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence            5       5678899999999999999999999999999999999999999999999999999999998874

>d1k94a_ a.39.1.8 (A:) Grancalcin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Grancalcin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=6.7e-18  Score=139.73  Aligned_cols=148  Identities=15%  Similarity=0.279  Sum_probs=119.4

Q ss_pred             HHhhhcc-ccCCCccCHHHHHHHHHHcCCCc-----CHHHHHHHH----HhCCCcccHHHHHHHHHhhcCCCCCHHHHHH
Q psy2947         269 RECFFLF-ARNGTIKTLDELSVIMRSLGMSP-----TIAELKKYL----AEKGGKLSFPDFLKVMHTHSKAEDIPKEVVD  338 (441)
Q Consensus       269 ~~~f~~~-d~~G~i~~~~el~~~~~~~~~~~-----~~~~~~~~~----~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~  338 (441)
                      ...|..+ +.+|+| +.+|++.+++..+..+     +...+..++    .+++|.|+++||..++...       ..++.
T Consensus         3 ~~~F~~~a~~dG~I-~~~EL~~~L~~~g~~~~~~~~s~~~~~~li~~~D~~~~G~i~~~EF~~l~~~~-------~~~~~   74 (165)
T d1k94a_           3 YTYFSAVAGQDGEV-DAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAFKELWAAL-------NAWKE   74 (165)
T ss_dssp             HHHHHHHHGGGTSB-CHHHHHHHHHHHTTTTTSCCCCHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHH-------HHHHH
T ss_pred             HHHHHHhcCCCCCC-CHHHHHHHHHHcCCCCCcccCCHHHHHHHHHHhCCCCCCcCcHHHHHHHhhcc-------chhHH
Confidence            3456554 357999 8999999999887644     345555554    4789999999999988743       78999


Q ss_pred             HHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Q psy2947         339 AFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANV  418 (441)
Q Consensus       339 ~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~  418 (441)
                      +|+.||.|++|+|+.+||+.++... +.....++++.+++.+|.  +|.|+++||.+++..+      +.+..+|+.+|+
T Consensus        75 ~F~~fD~d~sG~I~~~El~~~l~~~-G~~l~~~~~~~l~~~~d~--~g~i~~~eFi~~~~~l------~~~~~~F~~~D~  145 (165)
T d1k94a_          75 NFMTVDQDGSGTVEHHELRQAIGLM-GYRLSPQTLTTIVKRYSK--NGRIFFDDYVACCVKL------RALTDFFRKRDH  145 (165)
T ss_dssp             HHHHHCTTCCSBCCHHHHHHHHHHT-TCCCCHHHHHHHHHHHCB--TTBCBHHHHHHHHHHH------HHHHHHHHTTCT
T ss_pred             HHHHhCCCCCCeEcHHHHHHHHHHh-hhcCCHHHHHHHHHHcCC--CCcCcHHHHHHHHHHH------HHHHHHHHHhCC
Confidence            9999999999999999999999887 345567889999999975  5889999999988764      557789999999


Q ss_pred             CCCCce--eHHHHHHHH
Q psy2947         419 TMNSKV--RYEDFVKIA  433 (441)
Q Consensus       419 d~dg~i--~~~ef~~~l  433 (441)
                      +++|.|  +++||+..+
T Consensus       146 d~~G~i~l~~~ef~~~~  162 (165)
T d1k94a_         146 LQQGSANFIYDDFLQGT  162 (165)
T ss_dssp             TCCSEEEEEHHHHHHHH
T ss_pred             CCCCcEEecHHHHHHHH
Confidence            999976  789998765

>d1omra_ a.39.1.5 (A:) Recoverin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Recoverin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.76  E-value=5.9e-18  Score=145.90  Aligned_cols=126  Identities=17%  Similarity=0.274  Sum_probs=107.4

Q ss_pred             hCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcc
Q psy2947         309 EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTV  388 (441)
Q Consensus       309 ~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i  388 (441)
                      .++|.|+++||.+++........+...+..+|+.+|.|++|.|++.||..++.... ....++.++.+|+.||.|++|.|
T Consensus        38 ~~~G~is~~EF~~~l~~~~~~~~~~~~~~~if~~~D~~~~G~I~f~EF~~~~~~~~-~~~~~~~l~~~F~~~D~d~~G~i  116 (201)
T d1omra_          38 CPSGRITRQEFQTIYSKFFPEADPKAYAQHVFRSFDANSDGTLDFKEYVIALHMTS-AGKTNQKLEWAFSLYDVDGNGTI  116 (201)
T ss_dssp             CTTSEEEHHHHHHHHHHHCTTSCCHHHHHHHHHTTTSCSSSEEEHHHHHHHHHHHH-SSCGGGSHHHHHHHHCTTCSSSB
T ss_pred             CcCCCccHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCCCCeEeehhHHHHHHhhc-ccchHHHHHHHHHHHccCCCCcc
Confidence            57999999999999998877667777889999999999999999999999887763 33446779999999999999999


Q ss_pred             cHHHHHHHHHHhCCCCC--------------HHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         389 PAKYLKHVLVNWGEGLS--------------SKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       389 s~~ef~~~l~~~~~~l~--------------~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      +.+||..++..+.....              ++.++.+|+.+|.|+||.|+|+||++++.+
T Consensus       117 s~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~D~d~dG~Is~~EF~~~~~~  177 (201)
T d1omra_         117 SKNEVLEIVTAIFKMISPEDTKHLPEDENTPEKRAEKIWGFFGKKDDDKLTEKEFIEGTLA  177 (201)
T ss_dssp             CHHHHHHHHHHHHTTSCHHHHTTSCGGGSSHHHHHHHHHHHTTCCTTCCBCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhcChhhhhhhhhhhccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence            99999999987533222              345788999999999999999999987743

>d1k94a_ a.39.1.8 (A:) Grancalcin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Grancalcin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2.9e-17  Score=135.86  Aligned_cols=119  Identities=18%  Similarity=0.276  Sum_probs=106.4

Q ss_pred             HhCCCcccHHHHHHHHHhhcCC----CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCC
Q psy2947         308 AEKGGKLSFPDFLKVMHTHSKA----EDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTT  383 (441)
Q Consensus       308 ~~~~g~i~~~ef~~~~~~~~~~----~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~  383 (441)
                      .+++|+|+.+|+.+++......    ..+.+.++.+++.+|.|++|.|+++||..++...       +.++.+|+.+|+|
T Consensus        10 a~~dG~I~~~EL~~~L~~~g~~~~~~~~s~~~~~~li~~~D~~~~G~i~~~EF~~l~~~~-------~~~~~~F~~fD~d   82 (165)
T d1k94a_          10 AGQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAFKELWAAL-------NAWKENFMTVDQD   82 (165)
T ss_dssp             HGGGTSBCHHHHHHHHHHHTTTTTSCCCCHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHH-------HHHHHHHHHHCTT
T ss_pred             cCCCCCCCHHHHHHHHHHcCCCCCcccCCHHHHHHHHHHhCCCCCCcCcHHHHHHHhhcc-------chhHHHHHHhCCC
Confidence            4789999999999999876543    2246889999999999999999999999988765       6789999999999


Q ss_pred             CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         384 KSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       384 ~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      ++|+|+.+||+.+++.+|..+++++++.++.++|.  +|.|+|+||+++|.+
T Consensus        83 ~sG~I~~~El~~~l~~~G~~l~~~~~~~l~~~~d~--~g~i~~~eFi~~~~~  132 (165)
T d1k94a_          83 GSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSK--NGRIFFDDYVACCVK  132 (165)
T ss_dssp             CCSBCCHHHHHHHHHHTTCCCCHHHHHHHHHHHCB--TTBCBHHHHHHHHHH
T ss_pred             CCCeEcHHHHHHHHHHhhhcCCHHHHHHHHHHcCC--CCcCcHHHHHHHHHH
Confidence            99999999999999999999999999999999964  689999999988753

>d1juoa_ a.39.1.8 (A:) Sorcin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Sorcin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.1e-17  Score=140.35  Aligned_cols=156  Identities=18%  Similarity=0.281  Sum_probs=128.6

Q ss_pred             ccchHHHHHhhhcc-ccCCCccCHHHHHHHHHHcCCCc-----CHHHHHHHH----HhCCCcccHHHHHHHHHhhcCCCC
Q psy2947         262 KTPYLEFRECFFLF-ARNGTIKTLDELSVIMRSLGMSP-----TIAELKKYL----AEKGGKLSFPDFLKVMHTHSKAED  331 (441)
Q Consensus       262 ~~~~~~l~~~f~~~-d~~G~i~~~~el~~~~~~~~~~~-----~~~~~~~~~----~~~~g~i~~~ef~~~~~~~~~~~~  331 (441)
                      .++...++..|..+ +.+|.| +..|++.++++++..+     +..++..++    .+++|.|+++||..++...     
T Consensus         3 ~~~~~~~~~~F~~~~~~dG~I-s~~EL~~~L~~~g~~~~~~~~~~~~v~~l~~~~D~d~~G~I~f~EF~~~~~~~-----   76 (172)
T d1juoa_           3 GQTQDPLYGYFAAVAGQDGQI-DADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVL-----   76 (172)
T ss_dssp             TCCCCTTHHHHHHHHTTTTEE-CHHHHHHHHHHHTTTCSSCCCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHH-----
T ss_pred             cchHHHHHHHHHHhCCCCCCC-CHHHHHHHHHHcCCCCCcccCCHHHHHHHHHHHCCCCCCceehHHHHHHHHhh-----
Confidence            34555677778665 456999 8999999999987543     345555544    4789999999999998754     


Q ss_pred             CHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHH
Q psy2947         332 IPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQ  411 (441)
Q Consensus       332 ~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~  411 (441)
                        ..+..+|+.+|.+++|.|+.+|+..++... ......+.++.+|+.+|  ++|.|+++||.++|..+      +.+..
T Consensus        77 --~~~~~~f~~~D~d~sG~i~~~El~~~l~~~-g~~ls~~~~~~l~~~~d--~~g~i~~~eF~~~~~~~------~~~~~  145 (172)
T d1juoa_          77 --NGWRQHFISFDTDRSGTVDPQELQKALTTM-GFRLSPQAVNSIAKRYS--TNGKITFDDYIACCVKL------RALTD  145 (172)
T ss_dssp             --HHHHHHHHTTCTTCCSEECHHHHHHHHHHT-TCCCCHHHHHHHHHHTC--SSSSEEHHHHHHHHHHH------HHHHH
T ss_pred             --hhhhHHHHHhCcCCCCcCCHHHHHHHHHHH-HHhhhHHHHHHHHHHHH--hcCCcCHHHHHHHHHHH------HHHHH
Confidence              668899999999999999999999999886 44556788999999996  46889999999999775      46788


Q ss_pred             HHHHhCCCCCCce--eHHHHHHHHh
Q psy2947         412 IFREANVTMNSKV--RYEDFVKIAC  434 (441)
Q Consensus       412 l~~~~d~d~dg~i--~~~ef~~~l~  434 (441)
                      +|+.+|+|++|.|  +|+||+.++.
T Consensus       146 ~f~~~D~d~~G~Itl~~~eFl~~~l  170 (172)
T d1juoa_         146 SFRRRDTAQQGVVNFPYDDFIQCVM  170 (172)
T ss_dssp             HHHHTCTTCCSEEEEEHHHHHHHHT
T ss_pred             HHHHhCCCCCCcEEecHHHHHHHHH
Confidence            9999999999987  8899998864

>d1m45a_ a.39.1.5 (A:) Myosin Light Chain Mlc1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Light Chain Mlc1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=2.2e-18  Score=140.57  Aligned_cols=136  Identities=22%  Similarity=0.438  Sum_probs=100.8

Q ss_pred             HHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcC
Q psy2947         268 FRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADT  345 (441)
Q Consensus       268 l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~  345 (441)
                      ++++|..+|.+  |.| +..|+..+++.+|..++..++..++..                                ..+.
T Consensus         4 ~k~~F~~~D~d~~G~I-~~~el~~~l~~lg~~~s~~ei~~l~~~--------------------------------~~~~   50 (146)
T d1m45a_           4 NKDIFTLFDKKGQGAI-AKDSLGDYLRAIGYNPTNQLVQDIINA--------------------------------DSSL   50 (146)
T ss_dssp             CTTCHHHHCTTCCSEE-EGGGHHHHHHHTTCCCCHHHHHHHHHC----------------------------------CC
T ss_pred             HHHHHHHHcCCCcCCC-CHHHHHHHHHHcCCchhHHHHhhhhcc--------------------------------cccc
Confidence            45667777764  667 677777777777766666666665531                                2233


Q ss_pred             CCCCcccHHHHHHHHHhhc-----cCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCC
Q psy2947         346 TKSGKLSFPDFLKVMHTHS-----KAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTM  420 (441)
Q Consensus       346 d~~g~i~~~ef~~~~~~~~-----~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~  420 (441)
                      +.+|.|++.+|..++....     ......+.+..+|+.+|.+++|.|+.+||+.+|..+|.+++++++..+++.+|.|+
T Consensus        51 ~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~g~~l~~~ei~~l~~~~D~d~  130 (146)
T d1m45a_          51 RDASSLTLDQITGLIEVNEKELDATTKAKTEDFVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDS  130 (146)
T ss_dssp             --CCEEEHHHHHHHHHHTHHHHHGGGCCCTHHHHHHHHTTCSSSSSEEEHHHHHHHHHHSTTCCCHHHHHHHHTTCCCCT
T ss_pred             ccccccccchhhhhhhhhcccccccccchHHHHHHHHHhhccccccccchhhhhhhhcccCCcchHHHHHHHHHHhCCCC
Confidence            3445555555555443221     12233578899999999999999999999999999999999999999999999999


Q ss_pred             CCceeHHHHHHHHhcc
Q psy2947         421 NSKVRYEDFVKIACAP  436 (441)
Q Consensus       421 dg~i~~~ef~~~l~~~  436 (441)
                      +|.|+|+||++++.++
T Consensus       131 dG~I~y~eF~~~i~~q  146 (146)
T d1m45a_         131 NGEIDYKKFIEDVLRQ  146 (146)
T ss_dssp             TSEEEHHHHHHHHHCC
T ss_pred             CCcEEHHHHHHHHHcC
Confidence            9999999999988764

>d1dtla_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.75  E-value=4.3e-18  Score=140.55  Aligned_cols=142  Identities=25%  Similarity=0.470  Sum_probs=110.1

Q ss_pred             eecccchHHHHHhhhccccC---CCccCHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCHHH
Q psy2947         259 FTFKTPYLEFRECFFLFARN---GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKE  335 (441)
Q Consensus       259 ~l~~~~~~~l~~~f~~~d~~---G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~  335 (441)
                      .++++++++++++|..+|.+   |.| +..+++.+++.++..++..++                                
T Consensus         7 ~Lt~~~~~~l~~~F~~~D~d~~dG~I-~~~e~~~~l~~lg~~~~~~~~--------------------------------   53 (156)
T d1dtla_           7 QLTEEQKNEFKAAFDIFVLGAEDGSI-STKELGKVMRMLGQNPTPEEL--------------------------------   53 (156)
T ss_dssp             GSCHHHHHHHHHHHHHHTTTCGGGSB-CHHHHHHHHHHTTCCCCHHHH--------------------------------
T ss_pred             HCCHHHHHHHHHHHHHHcCCCCCCeE-CHHHHHHHHHHcCCCCCHHHH--------------------------------
Confidence            45677788888888888753   677 788888888877755554444                                


Q ss_pred             HHHHHHhhcCCCCCcccHHHHHHHHHhhcc---CCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHH
Q psy2947         336 VVDAFKAADTTKSGKLSFPDFLKVMHTHSK---AEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQI  412 (441)
Q Consensus       336 ~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~---~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l  412 (441)
                       ..++..++.+++|.+++.+|...+.....   .....+.++.+|+.+|.+++|+|+.+||++++..+|.++++++++.+
T Consensus        54 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~e~~~~~~~~~~~ls~~e~~~i  132 (156)
T d1dtla_          54 -QEMIDEVDEDGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEEL  132 (156)
T ss_dssp             -HHHHHHHCTTSSSSBCHHHHHHHHHHHHC-----CHHHHHHHHHHHHCTTCSSEEEHHHHGGGGTTC--CCCHHHHHHH
T ss_pred             -HHHHHHhhccCCCccchhhhhhhhhhcccccccccHHHHHHHHHHHhCcCCCCcCcHHHHHHHHhhcCCCCCHHHHHHH
Confidence             44445567777788888777765443221   22335678899999999999999999999999999999999999999


Q ss_pred             HHHhCCCCCCceeHHHHHHHHh
Q psy2947         413 FREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       413 ~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      |+.+|.|+||.|+|+||+++|.
T Consensus       133 ~~~~D~d~dG~I~~~eF~~~l~  154 (156)
T d1dtla_         133 MKDGDKNNDGRIDYDEFLEFMK  154 (156)
T ss_dssp             HHHHCTTSSSEEEHHHHHHHHH
T ss_pred             HHHhCCCCCCeEeHHHHHHHHc
Confidence            9999999999999999999885

>d1jfja_ a.39.1.5 (A:) EHCABP {Entamoeba (Entamoeba histolytica) [TaxId: 5759]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: EHCABP
species: Entamoeba (Entamoeba histolytica) [TaxId: 5759]

Probab=99.75  E-value=3.4e-18  Score=137.35  Aligned_cols=126  Identities=14%  Similarity=0.222  Sum_probs=105.7

Q ss_pred             HHHHHHhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCC--hHHHHHHHHHh
Q psy2947         303 LKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDI--PKEVVDAFKAA  380 (441)
Q Consensus       303 ~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~--~~~~~~~f~~~  380 (441)
                      +..++.+++|.|+++||..++.... ...+.+.+..+|+.+|.+++|.|+++||.+++.........  ...++.+|+.+
T Consensus         6 F~~~D~d~dG~is~~E~~~~l~~~~-~~~~~~~~~~~~~~~D~~~~g~i~~~Ef~~~~~~~~~~~~~~~~~~~~~~F~~~   84 (134)
T d1jfja_           6 FKEIDVNGDGAVSYEEVKAFVSKKR-AIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYGSIQGQDLSDDKIGLKVLYKLM   84 (134)
T ss_dssp             HHHHCTTCSSEEEHHHHHHHHHTTC-CSSHHHHHHHHHHHHCSSCCSEEEHHHHHHHTTCSSCCSSHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCcCCCcHHHHHHHHHHcC-CCCCHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccc
Confidence            3444478899999999998887663 34567789999999999999999999999988765433322  34678899999


Q ss_pred             CCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy2947         381 DTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA  433 (441)
Q Consensus       381 D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l  433 (441)
                      |.+++|+|+.+|+++++...+    .+.+..+|..+|.|+||.|+|+||+++|
T Consensus        85 D~~~~g~i~~~el~~~~~~~~----~~~~~~~~~~~D~d~dG~is~~EF~~~~  133 (134)
T d1jfja_          85 DVDGDGKLTKEEVTSFFKKHG----IEKVAEQVMKADANGDGYITLEEFLEFS  133 (134)
T ss_dssp             CCSSSSEEEHHHHHHHHTTTT----CHHHHHHHHHHHCSSSSEEEHHHHHHHH
T ss_pred             ccccCCcccHHHHHHHHHhcC----cHHHHHHHHHHCCCCCCCCCHHHHHHHh
Confidence            999999999999999998655    3678889999999999999999999987

>d1df0a1 a.39.1.8 (A:515-700) Calpain large subunit, C-terminal domain (domain IV) {Rat (Rattus norvegicus), M-type [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Calpain large subunit, C-terminal domain (domain IV)
species: Rat (Rattus norvegicus), M-type [TaxId: 10116]

Probab=99.75  E-value=7.6e-18  Score=143.16  Aligned_cols=158  Identities=16%  Similarity=0.222  Sum_probs=127.0

Q ss_pred             ecccch-HHHHHhhhccc-cCCCccCHHHHHHHHHHcCCC--------cCHHHHHHHH----HhCCCcccHHHHHHHHHh
Q psy2947         260 TFKTPY-LEFRECFFLFA-RNGTIKTLDELSVIMRSLGMS--------PTIAELKKYL----AEKGGKLSFPDFLKVMHT  325 (441)
Q Consensus       260 l~~~~~-~~l~~~f~~~d-~~G~i~~~~el~~~~~~~~~~--------~~~~~~~~~~----~~~~g~i~~~ef~~~~~~  325 (441)
                      .+++++ +.++++|..+| .+|.| +..|++.+++.++..        .+...+..++    .+++|.|+++||..++..
T Consensus        11 ~~~~~~~~~~r~~F~~~d~~dG~I-s~~EL~~~L~~~~~~~~~~~~~~~s~~~~~~l~~~~D~d~~G~I~~~EF~~~~~~   89 (186)
T d1df0a1          11 ANEEDIGDGFRRLFAQLAGEDAEI-SAFELQTILRRVLAKREDIKSDGFSIETCKIMVDMLDEDGSGKLGLKEFYILWTK   89 (186)
T ss_dssp             CCCSCSCHHHHHHHHHHHGGGTCE-EHHHHHHHHHHHHHC----CCCCCCHHHHHHHHHHHCCSSSSEECHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCCCeE-cHHHHHHHHHHhcccccccccccCCHHHHHHHHHHHcCCCCCcccHHHHHHHHHh
Confidence            334444 56899998876 45999 899999999876533        2344555544    378999999999998875


Q ss_pred             hcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCC
Q psy2947         326 HSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLS  405 (441)
Q Consensus       326 ~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~  405 (441)
                      .       ..++.+|+.+|.|++|+|+.+|+..++..... .. ..++..++..+|.|++|.|+++||.+++..+     
T Consensus        90 ~-------~~~~~~F~~~D~d~sG~I~~~El~~~l~~~g~-~~-~~~~~~~~~~~d~d~dg~I~f~eFi~~~~~l-----  155 (186)
T d1df0a1          90 I-------QKYQKIYREIDVDRSGTMNSYEMRKALEEAGF-KL-PCQLHQVIVARFADDELIIDFDNFVRCLVRL-----  155 (186)
T ss_dssp             H-------HHHHHHHHHHCTTCCSCEEGGGHHHHHHHTTE-EC-CHHHHHHHHHHHCCSTTEECHHHHHHHHHHH-----
T ss_pred             H-------HHHHHHHHhhCCCCCCcccHHHHHHHHHHHHh-cc-cHHHHHHHHHHHcCCCCeEeHHHHHHHHHHH-----
Confidence            3       67999999999999999999999999987632 23 3455667778999999999999999998664     


Q ss_pred             HHHHHHHHHHhCCCCCCce--eHHHHHHHH
Q psy2947         406 SKEVDQIFREANVTMNSKV--RYEDFVKIA  433 (441)
Q Consensus       406 ~~~~~~l~~~~d~d~dg~i--~~~ef~~~l  433 (441)
                       +.+..+|+.+|++++|.|  +|+||+.+.
T Consensus       156 -~~~~~~F~~~D~~~~G~i~l~~~ef~~~~  184 (186)
T d1df0a1         156 -EILFKIFKQLDPENTGTIQLDLISWLSFS  184 (186)
T ss_dssp             -HHHHHHHHHHCTTCCSEEEEEHHHHHHHH
T ss_pred             -HHHHHHHHHhCCCCCCcEEecHHHHHHHh
Confidence             678899999999999976  899998764

>d1bjfa_ a.39.1.5 (A:) Neurocalcin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Neurocalcin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.75  E-value=2.6e-17  Score=139.34  Aligned_cols=127  Identities=20%  Similarity=0.343  Sum_probs=110.1

Q ss_pred             hCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcc
Q psy2947         309 EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTV  388 (441)
Q Consensus       309 ~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i  388 (441)
                      +++|.++.+||..++............+.++|+.+|.+++|.|+++||...+..... ...++.++.+|+.+|.|++|.|
T Consensus        34 ~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~lf~~~d~~~~g~i~~~eFl~~~~~~~~-~~~~~~~~~~f~~~D~d~dg~i  112 (181)
T d1bjfa_          34 CPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFIIALSVTSR-GKLEQKLKWAFSMYDLDGNGYI  112 (181)
T ss_dssp             STTSEEEHHHHHHHHTTTSSSSCCHHHHHHHHHHHCSSCSSEEEHHHHHHHHHHHTS-SCHHHHHHHHHHHHCTTCSSCE
T ss_pred             CCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCCCcEeHHHHHHHHHHHhh-hchHHHHHHHHHHhccCCCCee
Confidence            589999999999999887666666677899999999999999999999999887743 3446789999999999999999


Q ss_pred             cHHHHHHHHHHhC------------CCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhcc
Q psy2947         389 PAKYLKHVLVNWG------------EGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAP  436 (441)
Q Consensus       389 s~~ef~~~l~~~~------------~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~~  436 (441)
                      +.+||..++....            ....++.++.+|+.+|.|+||.|+|+||.+++.+.
T Consensus       113 ~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~D~d~dG~Is~~EF~~~~~~~  172 (181)
T d1bjfa_         113 SKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEEFIRGAKSD  172 (181)
T ss_dssp             EHHHHHHHHHHHHTTCCCTTTSCGGGSSHHHHHHHHHHHSCTTCSSEECHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHhhhccccccCCcccccHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHhC
Confidence            9999999998642            23456789999999999999999999999988643

>d1fpwa_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Frequenin (neuronal calcium sensor 1)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=3e-17  Score=139.94  Aligned_cols=126  Identities=17%  Similarity=0.254  Sum_probs=108.7

Q ss_pred             hCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcc
Q psy2947         309 EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTV  388 (441)
Q Consensus       309 ~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i  388 (441)
                      .++|.++..||.+++..........+.+..+|+.+|.+++|.|++.||..++.... ....++.++.+|+.||.|++|.|
T Consensus        38 ~~~G~i~~~ef~~~~~~~~~~~~~~~~~~~if~~~D~~~~G~I~~~Ef~~~~~~~~-~~~~~e~~~~~F~~~D~d~dG~i  116 (190)
T d1fpwa_          38 CPSGQLAREDFVKIYKQFFPFGSPEDFANHLFTVFDKDNNGFIHFEEFITVLSTTS-RGTLEEKLSWAFELYDLNHDGYI  116 (190)
T ss_dssp             CTTCCEEHHHHHHHHHHHCTTSCCSHHHHHHHHTCCSSCSSEECHHHHHHHHHHHS-CCCSTHHHHHHHHHHCSSCSSEE
T ss_pred             CCCCCccHHHHHHHHHHHCCCCChHHHHHHHHHHhCcCCCCcccHHHHHHHHHHHc-cCchHHHHHHHHHHhccCCCCcC
Confidence            47899999999999988866656667788999999999999999999999998774 34457899999999999999999


Q ss_pred             cHHHHHHHHHHhCC------------CCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         389 PAKYLKHVLVNWGE------------GLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       389 s~~ef~~~l~~~~~------------~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      +++|+..+++....            ...++.++.+|+.+|.|+||.|+++||.+++.+
T Consensus       117 s~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~if~~~D~d~dG~Is~~EF~~~~~~  175 (190)
T d1fpwa_         117 TFDEMLTIVASVYKMMGSMVTLNEDEATPEMRVKKIFKLMDKNEDGYITLDEFREGSKV  175 (190)
T ss_dssp             EHHHHHHHHHHHHTTSCSTTSSSCCCCCHHHHHHHHHHHHTTTCSSEEEHHHHHHHHHS
T ss_pred             cHHHHHHHHHHHHHhcccccCCCchhhhHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence            99999999987531            122567889999999999999999999998865

>d1topa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.73  E-value=7.8e-18  Score=139.90  Aligned_cols=143  Identities=22%  Similarity=0.472  Sum_probs=108.6

Q ss_pred             eecccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCHHHH
Q psy2947         259 FTFKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEV  336 (441)
Q Consensus       259 ~l~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~  336 (441)
                      .++.+++.++++.|..+|.+  |+| +..+++.++...+..                                 .....+
T Consensus        13 ~ls~~~i~el~~~F~~~D~d~~G~I-s~~el~~~l~~~~~~---------------------------------~~~~~~   58 (162)
T d1topa_          13 FLSEEMIAEFKAAFDMFDADGGGDI-STKELGTVMRMLGQN---------------------------------PTKEEL   58 (162)
T ss_dssp             HSCHHHHHHHHHHHHTTTCSCSSEE-EGGGHHHHHHHTTCC---------------------------------CCHHHH
T ss_pred             cCCHHHHHHHHHHHHHHcCCCCCeE-cHHHHHHHHhccCCc---------------------------------hhHHHH
Confidence            45566666677777666654  555 556666666555433                                 345566


Q ss_pred             HHHHHhhcCCCCCcccHHHHHHHHHhhccC---CCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHH
Q psy2947         337 VDAFKAADTTKSGKLSFPDFLKVMHTHSKA---EDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIF  413 (441)
Q Consensus       337 ~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~---~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~  413 (441)
                      ..++..+|.+++|.+++.||...+......   ....+.++.+|+.+|.+++|+|+.+||++++...+...+++++..+|
T Consensus        59 ~~~~~~~d~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~aF~~~D~d~~G~Is~~e~~~~l~~~~~~~~~~~~~~l~  138 (162)
T d1topa_          59 DAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLM  138 (162)
T ss_dssp             HHHHHHHCTTSCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHTTTCCCCHHHHHHHH
T ss_pred             HhhhheeccCCCCCeeeehhhhhhhhhhhhhcccCcHHHHHHHHHHHCCCCCCCCcHHHHHHHHHhhCCCCCHHHHHHHH
Confidence            667777888888888888887755432111   11235678899999999999999999999999999999999999999


Q ss_pred             HHhCCCCCCceeHHHHHHHHhc
Q psy2947         414 REANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       414 ~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      +.+|.|+||.|+|+||+++|..
T Consensus       139 ~~~D~d~dG~Is~~EF~~~l~~  160 (162)
T d1topa_         139 KDSDKNNDGRIDFDEFLKMMEG  160 (162)
T ss_dssp             HHHCTTCSSSBCHHHHHHHHHS
T ss_pred             HHhCCCCCCcEEHHHHHHHHHc
Confidence            9999999999999999998853

>d1y1xa_ a.39.1.8 (A:) Programmed cell death 6 protein-like protein {Leishmania major [TaxId: 5664]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Programmed cell death 6 protein-like protein
species: Leishmania major [TaxId: 5664]

Probab=99.73  E-value=2.6e-17  Score=139.23  Aligned_cols=119  Identities=15%  Similarity=0.344  Sum_probs=109.7

Q ss_pred             HhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCc
Q psy2947         308 AEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGT  387 (441)
Q Consensus       308 ~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~  387 (441)
                      .+++|.|+.+||..++... +...+...++.+++.+|.|++|.|++++|...+...       ..++..|+.+|.+++|.
T Consensus        29 ~d~dG~Is~~El~~~l~~l-~~~~s~~~~~~l~~~~d~d~~~~i~~~ef~~~~~~~-------~~~~~~F~~~D~~~~g~  100 (182)
T d1y1xa_          29 TDGSGAISVPELNAALSSA-GVPFSLATTEKLLHMYDKNHSGEITFDEFKDLHHFI-------LSMREGFRKRDSSGDGR  100 (182)
T ss_dssp             TTCSSSBCHHHHHHHHCBT-TBCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHH-------HHHHHHHHHHCTTSSSC
T ss_pred             CCCcCCCCHHHHHHHHHHh-cccCchhhhhhhhccccccccccccccccccccccc-------cccccchhccccccchh
Confidence            7899999999999998765 345788999999999999999999999999987654       56888999999999999


Q ss_pred             ccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         388 VPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       388 is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      |+.+||++++..+|..+++++++.+++.+|.|++|.|+|+||+.++.
T Consensus       101 I~~~el~~~l~~~g~~ls~~e~~~i~~~~d~~~dg~I~~~eF~~~~~  147 (182)
T d1y1xa_         101 LDSNEVRAALLSSGYQVSEQTFQALMRKFDRQRRGSLGFDDYVELSI  147 (182)
T ss_dssp             BCHHHHHHHHHTTSCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred             hhhHHHHHHHHHhCCchhHHHHHHHHhhcccCCCCCcCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999873

>d1g8ia_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Frequenin (neuronal calcium sensor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=4.8e-17  Score=138.35  Aligned_cols=126  Identities=21%  Similarity=0.321  Sum_probs=107.5

Q ss_pred             hCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcc
Q psy2947         309 EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTV  388 (441)
Q Consensus       309 ~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i  388 (441)
                      +++|.++.++|..++............+..+|+.+|.+++|.|+++||..++...... ..++.++.+|+.+|.|++|.|
T Consensus        35 ~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~if~~~d~~~dg~I~~~EF~~~l~~~~~~-~~~e~l~~~F~~~D~d~dG~i  113 (187)
T d1g8ia_          35 CPSGQLDAAGFQKIYKQFFPFGDPTKFATFVFNVFDENKDGRIEFSEFIQALSVTSRG-TLDEKLRWAFKLYDLDNDGYI  113 (187)
T ss_dssp             CTTSEEEHHHHHHHHHHHCTTSCTHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHHHC-CHHHHHHHHHHHHCTTCSSEE
T ss_pred             CCCCCcCHHHHHHHHHHhcCCCCHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHhccC-chhhhHHHHHHHHhcCCCCeE
Confidence            5789999999999998887665666777889999999999999999999998877543 346789999999999999999


Q ss_pred             cHHHHHHHHHHhC------------CCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         389 PAKYLKHVLVNWG------------EGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       389 s~~ef~~~l~~~~------------~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      +.+|+..++..+.            ....++.++.+|+.+|.|+||.|+++||.+++.+
T Consensus       114 ~~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~if~~~D~d~dG~Is~~EF~~~~~~  172 (187)
T d1g8ia_         114 TRNEMLDIVDAIYQMVGNTVELPEEENTPEKRVDRIFAMMDKNADGKLTLQEFQEGSKA  172 (187)
T ss_dssp             EHHHHHHHHHHHHHHC-----CCGGGSSHHHHHHHHHHHHCSSCSSEEEHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhhhhcccccCchhhccHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHH
Confidence            9999999987531            1233567899999999999999999999998864

>d1exra_ a.39.1.5 (A:) Calmodulin {Ciliate (Paramecium tetraurelia) [TaxId: 5888]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Ciliate (Paramecium tetraurelia) [TaxId: 5888]

Probab=99.73  E-value=1.7e-17  Score=135.36  Aligned_cols=138  Identities=33%  Similarity=0.532  Sum_probs=119.8

Q ss_pred             eecccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHH----hCCCcccHHHHHHHHHhhcCCCCC
Q psy2947         259 FTFKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLA----EKGGKLSFPDFLKVMHTHSKAEDI  332 (441)
Q Consensus       259 ~l~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~~~~~~  332 (441)
                      .++++++.+++++|..+|.+  |.| +..++..++...+..++...+..++.    +++|.|+++||..++.........
T Consensus         2 ~lt~~e~~~l~~~F~~~D~~~~G~I-s~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~   80 (146)
T d1exra_           2 QLTEEQIAEFKEAFALFDKDGDGTI-TTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKEQDS   80 (146)
T ss_dssp             CCCHHHHHHHHHHHHHHCTTCSSEE-CHHHHHHHHHHHTCCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCCeE-CHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhhccCh
Confidence            35678899999999999986  888 89999999999999998888877665    689999999999998755443334


Q ss_pred             HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy2947         333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLV  398 (441)
Q Consensus       333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~  398 (441)
                      .+.++.+|+.+|.|++|.|+..||+.++... +.....+++..+|+.+|.|++|.|+++||.++|.
T Consensus        81 ~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~-~~~~~~~~~~~i~~~~D~d~dG~i~~~eF~~~l~  145 (146)
T d1exra_          81 EEELIEAFKVFDRDGNGLISAAELRHVMTNL-GEKLTDDEVDEMIREADIDGDGHINYEEFVRMMV  145 (146)
T ss_dssp             HHHHHHHHHHHSTTCSSCBCHHHHHHHHHHT-TCCCCHHHHHHHHHHHCSSSSSSBCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCcCCHHHHHHHHHHH-hhcCCHHHHHHHHHHhCCCCCCeEeHHHHHHHhc
Confidence            5789999999999999999999999999877 3455678999999999999999999999999884

>d1jbaa_ a.39.1.5 (A:) Guanylate cyclase activating protein 2, GCAP-2 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Guanylate cyclase activating protein 2, GCAP-2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.72  E-value=6.5e-17  Score=137.76  Aligned_cols=125  Identities=18%  Similarity=0.284  Sum_probs=104.4

Q ss_pred             CCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCccc
Q psy2947         310 KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVP  389 (441)
Q Consensus       310 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is  389 (441)
                      ++|+|+.+||.+++... ....+...+..+|+.+|.|++|.|++.||...+..... ...++.++.+|+.+|.|++|.|+
T Consensus        35 ~~G~i~~~Ef~~~l~~~-~~~~~~~~~~~lf~~~D~d~dG~I~f~Ef~~~l~~~~~-~~~~~~~~~~F~~~D~d~~g~i~  112 (189)
T d1jbaa_          35 PSGTLFMHEFKRFFKVP-DNEEATQYVEAMFRAFDTNGDNTIDFLEYVAALNLVLR-GTLEHKLKWTFKIYDKDRNGCID  112 (189)
T ss_dssp             TTCCEEHHHHHHHHHCC-SSSTTHHHHHHHHHHHCCSSSSEECHHHHHHHHHHHSS-CCCTHHHHHHHHHHCSSCSSCBC
T ss_pred             CCCeeeHHHHHHHHHHc-CCCccHHHHHHHHHHhccCCCCeEeehhHHHHHHhhcc-cchHHHHHHHHhhhccCCCCccc
Confidence            58999999999998643 33456778999999999999999999999999988753 34468899999999999999999


Q ss_pred             HHHHHHHHHHhC----------------C-CCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhcc
Q psy2947         390 AKYLKHVLVNWG----------------E-GLSSKEVDQIFREANVTMNSKVRYEDFVKIACAP  436 (441)
Q Consensus       390 ~~ef~~~l~~~~----------------~-~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~~  436 (441)
                      ++|+..++..+.                . ...++.++.+|+.+|.|+||.|+|+||++++.+.
T Consensus       113 ~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~if~~~D~d~dG~Is~~EF~~~~~~~  176 (189)
T d1jbaa_         113 RQELLDIVESIYKLKKACSVEVEAEQQGKLLTPEEVVDRIFLLVDENGDGQLSLNEFVEGARRD  176 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCCTTSSTTTCCCCHHHHHHHHHHHHCCSCCSCBCHHHHHHHHTTT
T ss_pred             HhHHHHHHHHHHHhhccccccchhhhhccccchHHHHHHHHHHhCCCCCCcEeHHHHHHHHHhC
Confidence            999999876431                1 1224667899999999999999999999998653

>d1auib_ a.39.1.5 (B:) Calcineurin regulatory subunit (B-chain) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcineurin regulatory subunit (B-chain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.1e-17  Score=139.44  Aligned_cols=143  Identities=18%  Similarity=0.248  Sum_probs=110.7

Q ss_pred             cccceecccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCC
Q psy2947         255 GYKVFTFKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDI  332 (441)
Q Consensus       255 ~~~~~l~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~  332 (441)
                      .+...++++++..+++.|..+|.+  |.| +.+|++.++....                                     
T Consensus         5 ~~~t~ft~eei~~l~~~F~~~D~d~~G~I-~~~E~~~~~~~~~-------------------------------------   46 (165)
T d1auib_           5 EMCSHFDADEIKRLGKRFKKLDLDNSGSL-SVEEFMSLPELQQ-------------------------------------   46 (165)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCCSEE-CHHHHTTSHHHHT-------------------------------------
T ss_pred             HHcCCCCHHHHHHHHHHHHHHCCCCCCCC-cHHHHHHhhhccC-------------------------------------
Confidence            344566777888888888777764  667 6777654433211                                     


Q ss_pred             HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH-hCCCCC----HH
Q psy2947         333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN-WGEGLS----SK  407 (441)
Q Consensus       333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~-~~~~l~----~~  407 (441)
                      ...+..+|+.+|.+++|.|+++||...+..........+.++.+|+.+|.+++|.|+.+|++++++. .+..++    ++
T Consensus        47 ~~~~~~l~~~~d~~~~g~i~~~EFl~~~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~el~~~l~~~~~~~~~~~~~~~  126 (165)
T d1auib_          47 NPLVQRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQ  126 (165)
T ss_dssp             CTTHHHHHHHHCTTCSSSEEHHHHHHHHGGGCTTCCHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHHTTSSCHHHHHH
T ss_pred             CHHHHHHHHHHccccchhhhhhhhhhhccccccchhhHHHHHHHHHHhcccccccccHHHHHHHHHHhccccCchHHHHH
Confidence            0124567889999999999999999999887555555678999999999999999999999999977 355555    44


Q ss_pred             HHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         408 EVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       408 ~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      .++.+|..+|.|+||.|+++||+++|..
T Consensus       127 ~~~~~~~~~D~~~dG~Is~~EF~~i~~~  154 (165)
T d1auib_         127 IVDKTIINADKDGDGRISFEEFCAVVGG  154 (165)
T ss_dssp             HHHHHHHHHCTTSSSSEEHHHHHHHHGG
T ss_pred             HHHHHHHHcCCCCCCcEeHHHHHHHHhc
Confidence            5778999999999999999999998864

>d5pala_ a.39.1.4 (A:) Parvalbumin {Leopard shark (Triakis semifasciata) [TaxId: 30493]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Leopard shark (Triakis semifasciata) [TaxId: 30493]

Probab=99.71  E-value=5.8e-17  Score=123.65  Aligned_cols=99  Identities=19%  Similarity=0.393  Sum_probs=85.2

Q ss_pred             CHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh---CCCCCHHH
Q psy2947         332 IPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW---GEGLSSKE  408 (441)
Q Consensus       332 ~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~---~~~l~~~~  408 (441)
                      ..+++.+++..+|  .+|.|++.||..++..   ....++.++.+|+.||+|++|+|+.+||+++++.+   |.++++++
T Consensus         7 ~~~di~~~~~~~~--~~G~idf~eF~~~~~~---~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~l~~~g~~~~~~e   81 (109)
T d5pala_           7 KADDINKAISAFK--DPGTFDYKRFFHLVGL---KGKTDAQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTE   81 (109)
T ss_dssp             CHHHHHHHHHHTC--STTCCCHHHHHHHHTC---TTCCHHHHHHHHHHHCTTCSSEECHHHHHTHHHHHCTTCCCCCHHH
T ss_pred             cHHHHHHHHHhcC--CCCcCcHHHHHHHHHh---cCCCHHHHHHHHhhhcCCCCCeEcHHHHHHHHHHhhhccCcCCHHH
Confidence            4566777777776  4578999999987753   23346889999999999999999999999999876   67899999


Q ss_pred             HHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         409 VDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       409 ~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      ++++++.+|.|+||.|+|+||+++|.+
T Consensus        82 ~~~~~~~~D~d~dG~I~~~EF~~~m~~  108 (109)
T d5pala_          82 TKALLAAGDSDHDGKIGADEFAKMVAQ  108 (109)
T ss_dssp             HHHHHHHHCTTCSSSEEHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCCEeHHHHHHHHHh
Confidence            999999999999999999999999875

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2.3e-17  Score=148.72  Aligned_cols=183  Identities=20%  Similarity=0.178  Sum_probs=130.8

Q ss_pred             CccCCC---CCCCCC-CcccEEeccCCCc---C-cccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCC
Q psy2947          49 GICSHI---WIPQYF-SHAFLLSLSYTPI---G-RRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNAS  120 (441)
Q Consensus        49 ~~c~~~---~~~~~l-~~L~~l~l~~n~i---~-~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~  120 (441)
                      |.|++.   .+|.++ ++|+.|+|++|.|   | ..+.++++|++|+|++|+|+.+|. ++.+++|++|++++|+++  .
T Consensus        15 v~C~~~~L~~iP~~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~N~l~--~   91 (266)
T d1p9ag_          15 VNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQLQ--S   91 (266)
T ss_dssp             EECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSCCS--S
T ss_pred             EEccCCCCCeeCcCcCcCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-cccccccccccccccccc--c
Confidence            567653   456555 5799999999955   4 457789999999999999998864 578899999999999998  6


Q ss_pred             CchhhhcCCCCCEEEccCCCCCccc-hhhcCCCCCCEEEccCCcCccCcccc---------------ccccccccccccc
Q psy2947         121 IPFTLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVYRHGNHNYFKSTFM---------------WYHSDIHARIRST  184 (441)
Q Consensus       121 ~p~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~N~~~~~~~~~---------------~~~~~~p~~l~~l  184 (441)
                      +|..+..+++|+.|++++|.+..++ ..+..+.+++.|++++|.+.......               .+....+..+..+
T Consensus        92 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l  171 (266)
T d1p9ag_          92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL  171 (266)
T ss_dssp             CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTC
T ss_pred             cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccc
Confidence            7777888888888888888887665 45556677777777777653332100               0112223445666


Q ss_pred             chhHHH-HhhcccccCCchhhhhhhhcccccccccCCCCCCCchhhhHHHh
Q psy2947         185 STRDEV-LRKQKKLHQPSRLQDLAVQSVIASKENFFEPGLFPGPLVDYIAR  234 (441)
Q Consensus       185 ~~~~~~-l~~~~~~~~p~~l~~l~~l~~l~l~~n~~~~~~~p~~~~~~l~~  234 (441)
                      +.+..+ +++|.+..+|+.+..++.|+.+++++|+|.+.+--.++.+|+..
T Consensus       172 ~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~CdC~~~~l~~wl~~  222 (266)
T d1p9ag_         172 ENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQD  222 (266)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSGGGHHHHHHHHH
T ss_pred             cccceeecccCCCcccChhHCCCCCCCEEEecCCCCCCCcchHHHHHHHHh
Confidence            666666 77888888888888888888888888888775443455566544

>d1qxpa2 a.39.1.8 (A:515-702) Calpain large subunit, C-terminal domain (domain IV) {Rat (Rattus norvegicus), mu-type [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Calpain large subunit, C-terminal domain (domain IV)
species: Rat (Rattus norvegicus), mu-type [TaxId: 10116]

Probab=99.70  E-value=1.8e-17  Score=140.22  Aligned_cols=158  Identities=13%  Similarity=0.160  Sum_probs=110.5

Q ss_pred             ecccch-HHHHHhhhccccC-CCccCHHHHHHHHHHcCCC--------cCHHHHHHHH----HhCCCcccHHHHHHHHHh
Q psy2947         260 TFKTPY-LEFRECFFLFARN-GTIKTLDELSVIMRSLGMS--------PTIAELKKYL----AEKGGKLSFPDFLKVMHT  325 (441)
Q Consensus       260 l~~~~~-~~l~~~f~~~d~~-G~i~~~~el~~~~~~~~~~--------~~~~~~~~~~----~~~~g~i~~~ef~~~~~~  325 (441)
                      ++++++ +.++++|..+|.+ |.| +..|++.+++.++..        .....+..++    .+++|.|+++||..++..
T Consensus        13 ls~~~~~~~~r~~F~~~d~~dG~I-s~~EL~~~L~~~~~~~~~~~~~~~s~e~~~~li~~~D~d~~G~i~~~EF~~l~~~   91 (188)
T d1qxpa2          13 LSEEEIDDNFKTLFSKLAGDDMEI-SVKELQTILNRIISKHKDLRTNGFSLESCRSMVNLMDRDGNGKLGLVEFNILWNR   91 (188)
T ss_dssp             --------------CCCCCSSSSC-CCSCTTTTTCC---------CCCCCHHHHHHHHHHHCC--CCCCCSSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCCCEE-CHHHHHHHHHHhCccccccccccCCHHHHHHHHHHhcCCCCCcccHHHHHHHHhh
Confidence            345554 4589999998864 999 788898887665432        2334455544    478999999999998875


Q ss_pred             hcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCC
Q psy2947         326 HSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLS  405 (441)
Q Consensus       326 ~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~  405 (441)
                      .       ..++.+|+.||.|++|.|+..||..++.... .....+.+..++.. |.+++|.|+++||..++..+     
T Consensus        92 ~-------~~~~~~F~~~D~d~sG~i~~~El~~~l~~~g-~~~~~~~~~~l~~~-~~~~dg~i~f~eFi~~~~~l-----  157 (188)
T d1qxpa2          92 I-------RNYLTIFRKFDLDKSGSMSAYEMRMAIEAAG-FKLPCQLHQVIVAR-FADDELIIDFDNFVRCLVRL-----  157 (188)
T ss_dssp             H-------HHHHHHHGGGCTTCCSCCBHHHHHHHHHHTT-EECCHHHHHHHHHH-TSCSSSBCCHHHHHHHHHHH-----
T ss_pred             h-------HHHHHHHHHhCCCCCCEECHHHHHHHHHHhh-hcCCHHHHHHHHHH-hcCCCCcCCHHHHHHHHHHH-----
Confidence            4       6799999999999999999999999998763 33345566666666 56999999999999998764     


Q ss_pred             HHHHHHHHHHhCCCCCCce--eHHHHHHHH
Q psy2947         406 SKEVDQIFREANVTMNSKV--RYEDFVKIA  433 (441)
Q Consensus       406 ~~~~~~l~~~~d~d~dg~i--~~~ef~~~l  433 (441)
                       +.+..+|+.+|.+++|.|  +++||+.+.
T Consensus       158 -~~~~~~F~~~D~~~~G~i~l~~~efl~~~  186 (188)
T d1qxpa2         158 -EILFKIFKQLDPENTGTIQLDLISWLSFS  186 (188)
T ss_dssp             -HHHHHHHHHSCSSCCSCEEEEHHHHHHHT
T ss_pred             -HHHHHHHHHhCCCCCCeEEeeHHHHHHHH
Confidence             456789999999999966  889998753

>d2zfda1 a.39.1.5 (A:32-214) Calcineurin B-like protein 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcineurin B-like protein 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.70  E-value=1.7e-16  Score=134.34  Aligned_cols=124  Identities=19%  Similarity=0.321  Sum_probs=98.8

Q ss_pred             CCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCccc
Q psy2947         310 KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVP  389 (441)
Q Consensus       310 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is  389 (441)
                      ++|.|+.+||..++....  ......+..+|+.+|.|++|.|+++||..++.........++.++.+|+.+|.|++|.|+
T Consensus        32 ~~G~i~~~ef~~~l~~~~--~~~~~~~~~lf~~~d~~~dg~I~f~EFl~~l~~~~~~~~~~~~~~~~F~~~D~d~~G~Is  109 (183)
T d2zfda1          32 DDGLINKEEFQLALFKTN--KKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIHFSFQLYDLKQQGFIE  109 (183)
T ss_dssp             CSSSBCHHHHHHHHHSCS--SCCCHHHHHHHHHHCSSCSSSBCHHHHHHHHHHTSTTSCHHHHHHHHHHHHCTTSSSSEE
T ss_pred             CCCcCcHHHHHHHHHhcC--CCCCHHHHHHHHHHccCCCCcCcHHHHHHHHHhhhccCcHHHHHHHhhcccccCCCCCcc
Confidence            466777777766664322  223345788999999999999999999998877654445567899999999999999999


Q ss_pred             HHHHHHHHHH----hCCCCCHHH----HHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         390 AKYLKHVLVN----WGEGLSSKE----VDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       390 ~~ef~~~l~~----~~~~l~~~~----~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      .+|++.++..    .+..+++..    ++.+|+.+|.|+||.|+|+||.+++.+
T Consensus       110 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~D~d~dG~Is~~EF~~~~~~  163 (183)
T d2zfda1         110 RQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDGKIDKEEWRSLVLR  163 (183)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHCSSCSSEECHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHH
Confidence            9999998865    355666555    556899999999999999999998864

>d1s6ca_ a.39.1.5 (A:) Kchip1, Kv4 potassium channel-interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Kchip1, Kv4 potassium channel-interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=2.1e-16  Score=133.26  Aligned_cols=127  Identities=18%  Similarity=0.292  Sum_probs=105.5

Q ss_pred             hCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcc
Q psy2947         309 EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTV  388 (441)
Q Consensus       309 ~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i  388 (441)
                      +++|.|+.+||.+++............+..+|+.+|.|++|.|+++||..++..... ....+.++.+|+.+|.+++|.|
T Consensus        26 ~~~G~is~~ef~~~l~~~~~~~~~~~~~~~lf~~~D~~~~g~I~~~EFl~~~~~~~~-~~~~~~~~~~f~~~D~~~~g~i  104 (178)
T d1s6ca_          26 CPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLR-GTVHEKLRWTFNLYDINKDGYI  104 (178)
T ss_dssp             CTTSEECHHHHHHHHHHHSTTSCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHH-CCHHHHHHHHHHHHCTTCSSCE
T ss_pred             CcCCCccHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHHhc-cchHHHHHHHHHhhccCCCCee
Confidence            578999999999999888666666777899999999999999999999998876643 3346789999999999999999


Q ss_pred             cHHHHHHHHHHh----C--------CCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhcc
Q psy2947         389 PAKYLKHVLVNW----G--------EGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAP  436 (441)
Q Consensus       389 s~~ef~~~l~~~----~--------~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~~  436 (441)
                      +++|+..++..+    +        ....++.++.+|+.+|.|+||.|+|+||.+++.+.
T Consensus       105 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~D~d~DG~Is~~EF~~~i~~~  164 (178)
T d1s6ca_         105 NKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESCQED  164 (178)
T ss_dssp             EHHHHHHHHHHHHHHTC-----------CHHHHHHHHHHHCTTCSSEECHHHHHHHTTSC
T ss_pred             cHHHHHHHHHHHHhhcccccccCCcHHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHC
Confidence            999999887653    1        11235567899999999999999999999987653

>d1s6ia_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD {Soybean (Glycine max) [TaxId: 3847]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-dependent protein kinase sk5 CLD
species: Soybean (Glycine max) [TaxId: 3847]

Probab=99.70  E-value=9.7e-18  Score=141.91  Aligned_cols=140  Identities=24%  Similarity=0.408  Sum_probs=110.2

Q ss_pred             ecccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCHHHHH
Q psy2947         260 TFKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVV  337 (441)
Q Consensus       260 l~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~  337 (441)
                      ++++++..++++|..+|.+  |.| +..++..+++.++.                                 ..+...+.
T Consensus         4 Lt~~ei~~l~~~F~~~D~d~dG~I-s~~e~~~~l~~l~~---------------------------------~~~~~~~~   49 (182)
T d1s6ia_           4 LSEEEIGGLKELFKMIDTDNSGTI-TFDELKDGLKRVGS---------------------------------ELMESEIK   49 (182)
T ss_dssp             SSCTTTCSHHHHHHTTSSSSSSCE-EHHHHHHHHTTTTC---------------------------------CCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCCcCCC-CHHHHHHHHHHcCC---------------------------------ccccccch
Confidence            4556666666677666654  555 55666555555442                                 34556677


Q ss_pred             HHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Q psy2947         338 DAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREAN  417 (441)
Q Consensus       338 ~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d  417 (441)
                      .+|+.+|.+++|.|++.+|..++...... ...+.++.+|+.+|.+++|.|+.+|++++++..|  +++++++.+|+.+|
T Consensus        50 ~~~~~~d~~~~g~i~~~ef~~~~~~~~~~-~~~e~l~~aF~~~D~d~~G~i~~~el~~~l~~~g--l~~~ev~~~f~~~D  126 (182)
T d1s6ia_          50 DLMDAADIDKSGTIDYGEFIAATVHLNKL-EREENLVSAFSYFDKDGSGYITLDEIQQACKDFG--LDDIHIDDMIKEID  126 (182)
T ss_dssp             HHHHHTCTTCSSEECHHHHHHHHTTSSSS-CCCCSTHHHHHHTTTTCSSEEEHHHHHHTTTTTT--CCTTHHHHHHHHHC
T ss_pred             hhhhhhhccccccchHHHHHHHHHhhccc-ccHHHHHHHHHHHhhcCCCccchhhhhhhhhhcC--ccHHHHHHHHHHhh
Confidence            78888999999999999999877665332 3345788999999999999999999999998877  78899999999999


Q ss_pred             CCCCCceeHHHHHHHHhcc
Q psy2947         418 VTMNSKVRYEDFVKIACAP  436 (441)
Q Consensus       418 ~d~dg~i~~~ef~~~l~~~  436 (441)
                      .|+||.|+|+||+++|.+.
T Consensus       127 ~d~DG~Is~~EF~~~m~~~  145 (182)
T d1s6ia_         127 QDNDGQIDYGEFAAMMRKR  145 (182)
T ss_dssp             SSSSSEEETTHHHHTTSCC
T ss_pred             cCCCCeEeHHHHHHHHHhC
Confidence            9999999999999999644

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.3e-16  Score=143.73  Aligned_cols=126  Identities=29%  Similarity=0.282  Sum_probs=82.0

Q ss_pred             CCCcccEEeccCCCc---CcccCCCCCCCEEEccCCCCCcCCcC-ccCCCCCcEEEccCCcCCCCCCchh-hhcCCCCCE
Q psy2947          59 YFSHAFLLSLSYTPI---GRRIFKCDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPFT-LTFCKNLTH  133 (441)
Q Consensus        59 ~l~~L~~l~l~~n~i---~~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~p~~-~~~l~~L~~  133 (441)
                      .+++|+.|+|++|.+   +..+..+++|++|++++|.+..++.. +..+.+++.|++++|.++  .+|.. +..+++|+.
T Consensus        75 ~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~--~l~~~~~~~l~~l~~  152 (266)
T d1p9ag_          75 TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK--TLPPGLLTPTPKLEK  152 (266)
T ss_dssp             CCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC--CCCTTTTTTCTTCCE
T ss_pred             ccccccccccccccccccccccccccccccccccccccceeeccccccccccccccccccccc--eeccccccccccchh
Confidence            345555555555532   33444555555555555555544433 555566666666666665  45443 467788899


Q ss_pred             EEccCCCCCccc-hhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-Hhhccc
Q psy2947         134 LYLDNNLLDALP-GFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKK  196 (441)
Q Consensus       134 L~l~~n~l~~lp-~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~  196 (441)
                      +++++|+|+.+| ..|..+++|++|+|++|++.          .+|..+..+..+..+ +.+|..
T Consensus       153 l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~----------~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLY----------TIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             EECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC----------CCCTTTTTTCCCSEEECCSCCB
T ss_pred             cccccccccccCccccccccccceeecccCCCc----------ccChhHCCCCCCCEEEecCCCC
Confidence            999999998876 56788899999999999863          356666666666666 777765

>d1xo5a_ a.39.1.5 (A:) Calcium- and integrin-binding protein, CIB {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium- and integrin-binding protein, CIB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=6.2e-17  Score=136.34  Aligned_cols=149  Identities=18%  Similarity=0.273  Sum_probs=112.9

Q ss_pred             eecccchHHHHHhhhccccCCCccCHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCHHHHHH
Q psy2947         259 FTFKTPYLEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVD  338 (441)
Q Consensus       259 ~l~~~~~~~l~~~f~~~d~~G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~  338 (441)
                      .+++.++..+.+.|..++++|.. +..                      .+..|.+++++|..+......     .-...
T Consensus        10 ~ft~~EI~~l~~~F~~l~~~~~~-~~~----------------------~~~~~~i~~~e~~~~~~l~~~-----~~~~r   61 (180)
T d1xo5a_          10 FLTKQEILLAHRRFCELLPQEQR-SVE----------------------SSLRAQVPFEQILSLPELKAN-----PFKER   61 (180)
T ss_dssp             CSCHHHHHHHHHHHHTTSCGGGC-SHH----------------------HHHHCCEEHHHHHTSHHHHTC-----TTHHH
T ss_pred             CCCHHHHHHHHHHHHHHCcCccc-ccc----------------------ccccceEcHHHHhcCcccccC-----hHHHH
Confidence            45677788888888888777655 221                      234566788888664332111     12567


Q ss_pred             HHHhhcCC-CCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh-----CCCCCHHH----
Q psy2947         339 AFKAADTT-KSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW-----GEGLSSKE----  408 (441)
Q Consensus       339 ~f~~~D~d-~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~-----~~~l~~~~----  408 (441)
                      +|+.+|.+ ++|.|+++||..++.........++.++.+|+.||.|++|+|+.+|++++++.+     +..+++++    
T Consensus        62 if~~fd~~~~~g~I~f~EFv~~l~~~~~~~~~~~kl~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~  141 (180)
T d1xo5a_          62 ICRVFSTSPAKDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQL  141 (180)
T ss_dssp             HHHHHCCSTTCCEECHHHHHHHHHHHSTTSCHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHC------CCCCTTHHHH
T ss_pred             HHHhccCCCCCCcCcHHHHHHHHHHHhhcCCHHHHHHHhhccccCCCCCeeeHHHHHHHHHHHHhccccccccHHHHHHH
Confidence            89999987 699999999999988775455557789999999999999999999999999875     33455443    


Q ss_pred             HHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         409 VDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       409 ~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      +..+|+.+|.|+||.|+|+||.+++.+
T Consensus       142 v~~~~~~~D~d~dG~Is~~EF~~~~~~  168 (180)
T d1xo5a_         142 IDNILEESDIDRDGTINLSEFQHVISR  168 (180)
T ss_dssp             HHHHHHHHCTTCSSSBCHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCcCcHHHHHHHHHh
Confidence            556899999999999999999998864

>d1ij5a_ a.39.1.9 (A:) Cbp40 (plasmodial specific CaII-binding protein LAV1-2) {Physarum polycephalum [TaxId: 5791]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Cbp40 (plasmodial specific CaII-binding protein LAV1-2)
domain: Cbp40 (plasmodial specific CaII-binding protein LAV1-2)
species: Physarum polycephalum [TaxId: 5791]

Probab=99.68  E-value=9.9e-17  Score=148.58  Aligned_cols=168  Identities=19%  Similarity=0.274  Sum_probs=130.2

Q ss_pred             eecccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHH----HhCCCcccHHHHHHHHHhhcCCCCC
Q psy2947         259 FTFKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYL----AEKGGKLSFPDFLKVMHTHSKAEDI  332 (441)
Q Consensus       259 ~l~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~----~~~~g~i~~~ef~~~~~~~~~~~~~  332 (441)
                      .++..+...++++|..+|.+  |.| +.+|++.+++.++..++..++..++    .+++|.|+|.||...+....     
T Consensus       115 ~l~~~~~~~~~~~F~~~D~~~~g~i-~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~-----  188 (321)
T d1ij5a_         115 MLSEEDTNILRQLFLSSAVSGSGKF-SFQDLKQVLAKYADTIPEGPLKKLFVMVENDTKGRMSYITLVAVANDLA-----  188 (321)
T ss_dssp             CCCHHHHHHHHHHHTSSSSTTSSCC-CHHHHHHHHHHHHTTSCSSHHHHHHHHHHHCCSSTHHHHHHTTSHHHHH-----
T ss_pred             cCCHHHHHHHHHHHHHHcCCCCCeE-cHHHHHHHHHHcCCcccHHHHHHHHHHHhhcCCccccchhhhhhhhhhh-----
Confidence            45567888999999999986  788 8999999999988888777766655    47899999999987765432     


Q ss_pred             HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCC----------------------------hHHHHHHHHHhCCCC
Q psy2947         333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDI----------------------------PKEVVDAFKAADTTK  384 (441)
Q Consensus       333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~----------------------------~~~~~~~f~~~D~~~  384 (441)
                        .+...|+.+|.+++|.++..++...+.........                            ...+..+|..+|.|+
T Consensus       189 --~~~~~F~~~d~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~F~~~D~d~  266 (321)
T d1ij5a_         189 --ALVADFRKIDTNSNGTLSRKEFREHFVRLGFDKKSVQDALFRYADEDESDDVGFSEYVHLGLCLLVLRILYAFADFDK  266 (321)
T ss_dssp             --TSCCCHHHHCTTCCSEECHHHHHHHHHHTTCCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHHHHHHHHTCSSS
T ss_pred             --hhhHHHHHHhhcccccchhHHHhhhhhcccccchHHHHHHHHhhhcccccccccccccchhhhhhHHHHHHHHHhcCC
Confidence              22334666666666666666666655433211100                            123445799999999


Q ss_pred             CCcccHHHHHHHHHHhCC-CCCHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         385 SGTVPAKYLKHVLVNWGE-GLSSKEVDQIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       385 ~G~is~~ef~~~l~~~~~-~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      +|+|+..||++++...|. .++++++..+|..+|.|+||.|+|+||+.+|.
T Consensus       267 ~G~Is~~E~~~~l~~~~~~~~~~~~~~~l~~~~D~d~dG~Is~~EF~~~ml  317 (321)
T d1ij5a_         267 SGQLSKEEVQKVLEDAHIPESARKKFEHQFSVVDVDDSKSLSYQEFVMLVL  317 (321)
T ss_dssp             CSSEEHHHHHHHHHHTTCCGGGCSTHHHHHHHHTTTTCSEECHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHcCCCcCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence            999999999999999996 48889999999999999999999999999874

>d1w7jb1 a.39.1.5 (B:11-149) Myosin Essential Chain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Essential Chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=3.4e-17  Score=132.27  Aligned_cols=131  Identities=31%  Similarity=0.531  Sum_probs=96.7

Q ss_pred             HHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhc-
Q psy2947         268 FRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAAD-  344 (441)
Q Consensus       268 l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D-  344 (441)
                      ++++|..+|.+  |.| +..+++.+++.++..++..++..++.                                 .++ 
T Consensus         2 ~ke~F~~~D~d~~G~I-~~~el~~~l~~lg~~~t~~e~~~~~~---------------------------------~~~~   47 (139)
T d1w7jb1           2 FKEAFELFDRVGDGKI-LYSQCGDVMRALGQNPTNAEVLKVLG---------------------------------NPKS   47 (139)
T ss_dssp             HHHHHHHHCCSSSSEE-ESTTHHHHHHHTTCCCCHHHHHHHTT---------------------------------CCCH
T ss_pred             HHHHHHHHhCCCCCeE-CHHHHHHHHHHhccCCCHHHHHHHHH---------------------------------HHhc
Confidence            56778888765  677 67788888888877777776666552                                 122 


Q ss_pred             -CCCCCcccHHHHHHHHHhhccC--CCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCC
Q psy2947         345 -TTKSGKLSFPDFLKVMHTHSKA--EDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMN  421 (441)
Q Consensus       345 -~d~~g~i~~~ef~~~~~~~~~~--~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~d  421 (441)
                       .+++|.|++.+|..++......  ....+.+..+|+.+|.+++|+|+.+||++++..+|.++++++++.++.. |.|++
T Consensus        48 ~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~l~~aF~~~D~d~~G~I~~~el~~~l~~~g~~~~~~e~~~l~~~-~~d~d  126 (139)
T d1w7jb1          48 DELKSRRVDFETFLPMLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEVETVLAG-HEDSN  126 (139)
T ss_dssp             HHHTTCEEEHHHHHHHHHHHCC--------CCHHHHHTTCTTSSSEEEHHHHHHHHHHSSSCCCHHHHHHHHTT-CCCTT
T ss_pred             ccccCCceeeeccchhhHhhhhhccccHHHHHHHhhhhccCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHHhh-CCCCC
Confidence             2344555555555555433211  1123457789999999999999999999999999999999999999975 78999


Q ss_pred             CceeHHHHHHHH
Q psy2947         422 SKVRYEDFVKIA  433 (441)
Q Consensus       422 g~i~~~ef~~~l  433 (441)
                      |.|+|+||+++|
T Consensus       127 g~I~~~eF~~~l  138 (139)
T d1w7jb1         127 GCINYEAFLKHI  138 (139)
T ss_dssp             SEEEHHHHHHHT
T ss_pred             CeEeHHHHHHHh
Confidence            999999999976

>d1pvaa_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Pike (Esox lucius) [TaxId: 8010]

Probab=99.68  E-value=1.3e-16  Score=121.60  Aligned_cols=99  Identities=21%  Similarity=0.386  Sum_probs=83.6

Q ss_pred             CHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh---CCCCCHHH
Q psy2947         332 IPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW---GEGLSSKE  408 (441)
Q Consensus       332 ~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~---~~~l~~~~  408 (441)
                      +.+++.+++..+|  ++|.|++.||..++...   ....+.++.+|+.+|.|++|+|+.+|++.+++.+   |..+++++
T Consensus         7 ~~eeI~~~~~~~d--~dG~idf~EF~~~~~~~---~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~l~~~g~~ls~~e   81 (109)
T d1pvaa_           7 KADDIKKALDAVK--AEGSFNHKKFFALVGLK---AMSANDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAE   81 (109)
T ss_dssp             CHHHHHHHHHHTC--STTCCCHHHHHHHHTCT---TSCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTCCCCCHHH
T ss_pred             CHHHHHHHHHhcC--CCCCCcHHHHHHHHHHc---cCCHHHHHHHhhCccCCCcCeEcHHHHHHHHHHhhhcCCCCCHHH
Confidence            3456666666554  56789999999887543   3346789999999999999999999999999876   66799999


Q ss_pred             HHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         409 VDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       409 ~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      ++++++.+|.|+||.|+|+||+++|.+
T Consensus        82 v~~~~~~~D~d~dG~I~~~EF~~~m~~  108 (109)
T d1pvaa_          82 TKAFLKAADKDGDGKIGIDEFETLVHE  108 (109)
T ss_dssp             HHHHHHHHCTTCSSSBCHHHHHHHHHC
T ss_pred             HHHHHHHHCCCCcCcEeHHHHHHHHHh
Confidence            999999999999999999999999864

>d2obha1 a.39.1.5 (A:26-166) Calmodulin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.1e-16  Score=129.53  Aligned_cols=135  Identities=33%  Similarity=0.544  Sum_probs=117.9

Q ss_pred             cccchHHHHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHH----hCCCcccHHHHHHHHHhhcCCCCCHH
Q psy2947         261 FKTPYLEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLA----EKGGKLSFPDFLKVMHTHSKAEDIPK  334 (441)
Q Consensus       261 ~~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~~~~~~~~  334 (441)
                      |+++.++++++|..+|.+  |.| +..|+..+++..+..++...+..++.    +++|.|+++||...+..........+
T Consensus         1 t~~~~~elk~~F~~~D~~~~G~I-s~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~   79 (141)
T d2obha1           1 TEEQKQEIREAFDLFDADGTGTI-DVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFGDFLTVMTQKMSEKDTKE   79 (141)
T ss_dssp             CHHHHHHHHHHHHTTCTTCCSEE-EGGGHHHHHHHTTCCCCHHHHHHHHHHHTTTCCSEEEHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCCCCeE-eHHHHHHHHHhcCCchhHHHHHHHHHhhccCCCCeechHHHHHHHHHHHhhhccHH
Confidence            356788999999999976  889 89999999999999999888877664    68999999999999876544444567


Q ss_pred             HHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy2947         335 EVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVL  397 (441)
Q Consensus       335 ~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l  397 (441)
                      .+..+|+.+|.+++|.|+..+|..++... ......+++..+|+.+|.|++|.|+++||.++|
T Consensus        80 ~l~~~f~~~d~~~~G~i~~~el~~~l~~~-g~~l~~~e~~~l~~~~D~d~dG~i~~~EF~~~m  141 (141)
T d2obha1          80 EILKAFKLFDDDETGKISFKNLKRVAKEL-GENLTDEELQEMIDEADRDGDGEVSEQEFLRIM  141 (141)
T ss_dssp             HHHHHHHHHCTTCSSSBCHHHHHHHHHHT-TCCCCHHHHHHHHHHHCTTSSSSBCHHHHHHHH
T ss_pred             HHHHHHHHhcccCCCCccHHHHHHHHHHh-CCCCCHHHHHHHHHHHCCCCCCCEeHHHHHHhC
Confidence            79999999999999999999999999876 455668899999999999999999999999886

>d1df0a1 a.39.1.8 (A:515-700) Calpain large subunit, C-terminal domain (domain IV) {Rat (Rattus norvegicus), M-type [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Calpain large subunit, C-terminal domain (domain IV)
species: Rat (Rattus norvegicus), M-type [TaxId: 10116]

Probab=99.67  E-value=2.3e-16  Score=133.84  Aligned_cols=119  Identities=13%  Similarity=0.181  Sum_probs=103.7

Q ss_pred             hCCCcccHHHHHHHHHhhcC-------CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhC
Q psy2947         309 EKGGKLSFPDFLKVMHTHSK-------AEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAAD  381 (441)
Q Consensus       309 ~~~g~i~~~ef~~~~~~~~~-------~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D  381 (441)
                      +++|.|+.+||..++.....       ...+.+.+..+++.+|.|++|.|+++||..++...       ..++.+|+.+|
T Consensus        29 ~~dG~Is~~EL~~~L~~~~~~~~~~~~~~~s~~~~~~l~~~~D~d~~G~I~~~EF~~~~~~~-------~~~~~~F~~~D  101 (186)
T d1df0a1          29 GEDAEISAFELQTILRRVLAKREDIKSDGFSIETCKIMVDMLDEDGSGKLGLKEFYILWTKI-------QKYQKIYREID  101 (186)
T ss_dssp             GGGTCEEHHHHHHHHHHHHHC----CCCCCCHHHHHHHHHHHCCSSSSEECHHHHHHHHHHH-------HHHHHHHHHHC
T ss_pred             CCCCeEcHHHHHHHHHHhcccccccccccCCHHHHHHHHHHHcCCCCCcccHHHHHHHHHhH-------HHHHHHHHhhC
Confidence            68999999999999875432       23457889999999999999999999999988765       57889999999


Q ss_pred             CCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         382 TTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       382 ~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      +|++|+|+.+|++.+++..|..++++.++ ++...|.|++|.|+|+||+++|.+
T Consensus       102 ~d~sG~I~~~El~~~l~~~g~~~~~~~~~-~~~~~d~d~dg~I~f~eFi~~~~~  154 (186)
T d1df0a1         102 VDRSGTMNSYEMRKALEEAGFKLPCQLHQ-VIVARFADDELIIDFDNFVRCLVR  154 (186)
T ss_dssp             TTCCSCEEGGGHHHHHHHTTEECCHHHHH-HHHHHHCCSTTEECHHHHHHHHHH
T ss_pred             CCCCCcccHHHHHHHHHHHHhcccHHHHH-HHHHHHcCCCCeEeHHHHHHHHHH
Confidence            99999999999999999999999987665 555678999999999999998753

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.4e-16  Score=144.96  Aligned_cols=184  Identities=22%  Similarity=0.234  Sum_probs=125.3

Q ss_pred             cCCCCCccCCC----CccCCC---CCCCCC-CcccEEeccCCCc---C-cccCCCCCCCEEEccCCCCCc----------
Q psy2947          38 ACQRNCSLEVG----GICSHI---WIPQYF-SHAFLLSLSYTPI---G-RRIFKCDTVEVLSLKSNSLTS----------   95 (441)
Q Consensus        38 ~C~~~c~~~~~----~~c~~~---~~~~~l-~~L~~l~l~~n~i---~-~~~~~l~~L~~L~l~~n~l~~----------   95 (441)
                      |||..|+|+..    +.|+..   .+|..+ +++++|+|++|.|   | ..+.++++|++|++++|++..          
T Consensus         1 ~cp~~C~C~~~~~~~v~c~~~~L~~iP~~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~   80 (284)
T d1ozna_           1 PCPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA   80 (284)
T ss_dssp             CCCTTCEEECSSSCEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             CcCCCCEEcCCCCeEEEcCCCCCCccCCCCCCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccc
Confidence            59999999743    778873   344444 4789999999954   4 357788899999999886642          


Q ss_pred             ---------------C-CcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEccCCCCCccc-hhhcCCCCCCEEE
Q psy2947          96 ---------------L-PPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLDTVY  158 (441)
Q Consensus        96 ---------------l-p~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~  158 (441)
                                     + |..|.++++|++|++++|.+. ...+..+..+.+|+.+++++|+|+.+| ..|..+++|+.|+
T Consensus        81 ~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~  159 (284)
T d1ozna_          81 LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF  159 (284)
T ss_dssp             TCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cccccccccccccccccchhhcccccCCEEecCCcccc-cccccccchhcccchhhhccccccccChhHhccccchhhcc
Confidence                           2 234677888999999999887 333445577788888888888888876 5677778888888


Q ss_pred             ccCCcCccCcc--cc-------------cccccccccccccchhHHH-HhhcccccCC-chhhhhhhhcccccccccCCC
Q psy2947         159 RHGNHNYFKST--FM-------------WYHSDIHARIRSTSTRDEV-LRKQKKLHQP-SRLQDLAVQSVIASKENFFEP  221 (441)
Q Consensus       159 l~~N~~~~~~~--~~-------------~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p-~~l~~l~~l~~l~l~~n~~~~  221 (441)
                      +++|.+.....  +.             .+....|..+..++.+..+ ++.|.+..+| ..+..++.|+.+++++|++.+
T Consensus       160 l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             cccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence            88888643221  10             0122234555555555555 6666665555 345667777777777777765


Q ss_pred             C
Q psy2947         222 G  222 (441)
Q Consensus       222 ~  222 (441)
                      .
T Consensus       240 ~  240 (284)
T d1ozna_         240 D  240 (284)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d2mysc_ a.39.1.5 (C:) Myosin Regulatory Chain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Regulatory Chain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.67  E-value=3.2e-16  Score=127.39  Aligned_cols=120  Identities=13%  Similarity=0.221  Sum_probs=90.4

Q ss_pred             hHHHHHhhhccccCCCccCHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCC--CCCHHHHHHHHHh
Q psy2947         265 YLEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKA--EDIPKEVVDAFKA  342 (441)
Q Consensus       265 ~~~l~~~f~~~d~~G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~--~~~~~~~~~~f~~  342 (441)
                      ..++..+++.+   |.-++..++..++.....          ...++|.|+++||..++......  ....+.+..+|+.
T Consensus        23 ~~el~~~l~~l---g~~~~~~e~~~~~~~~~~----------d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~l~~aF~~   89 (145)
T d2mysc_          23 ASQVGDIARAL---GQNPTNAEINKILGNPSK----------EEMNAAAITFEEFLPMLQAAANNKDQGTFEDFVEGLRV   89 (145)
T ss_pred             HHHHHHHHHHh---hhcchhhhhHHHHHHHhh----------cccccCccchhHHHHHHhhhhhccccchHHHHHHHHHH
Confidence            34455555333   433366777777665431          12368899999999998765443  3456779999999


Q ss_pred             hcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         343 ADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       343 ~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      +|.+++|.|+.+||++++..+ +.....++++.+++. |.|++|.|+++||.++|.+
T Consensus        90 ~D~d~~G~I~~~el~~~l~~~-g~~~~~~e~~~l~~~-~~d~dG~I~y~eF~~~ll~  144 (145)
T d2mysc_          90 FDKEGNGTVMGAELRHVLATL-GEKMTEEEVEELMKG-QEDSNGCINYEAFVKHIMS  144 (145)
T ss_pred             hhcCCCCEEcHHHHHHHHHHh-CCCCCHHHHHHHHhh-cCCCCCeEEHHHHHHHHhc
Confidence            999999999999999999886 455667889999974 8899999999999988753

>d1juoa_ a.39.1.8 (A:) Sorcin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Sorcin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.2e-15  Score=127.74  Aligned_cols=118  Identities=21%  Similarity=0.317  Sum_probs=105.6

Q ss_pred             HhCCCcccHHHHHHHHHhhcCC----CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCC
Q psy2947         308 AEKGGKLSFPDFLKVMHTHSKA----EDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTT  383 (441)
Q Consensus       308 ~~~~g~i~~~ef~~~~~~~~~~----~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~  383 (441)
                      .+++|.|+.+||..++......    ..+.+.++.+++.+|.|++|.|+++||..++...       ..+..+|+.+|.+
T Consensus        17 ~~~dG~Is~~EL~~~L~~~g~~~~~~~~~~~~v~~l~~~~D~d~~G~I~f~EF~~~~~~~-------~~~~~~f~~~D~d   89 (172)
T d1juoa_          17 AGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVL-------NGWRQHFISFDTD   89 (172)
T ss_dssp             HTTTTEECHHHHHHHHHHHTTTCSSCCCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHH-------HHHHHHHHTTCTT
T ss_pred             CCCCCCCCHHHHHHHHHHcCCCCCcccCCHHHHHHHHHHHCCCCCCceehHHHHHHHHhh-------hhhhHHHHHhCcC
Confidence            4789999999999999877543    2356889999999999999999999999988764       5678899999999


Q ss_pred             CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         384 KSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       384 ~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      ++|.|+.+|++.++..+|..+++++++.+++++|  .+|.|+|++|+++|.
T Consensus        90 ~sG~i~~~El~~~l~~~g~~ls~~~~~~l~~~~d--~~g~i~~~eF~~~~~  138 (172)
T d1juoa_          90 RSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYS--TNGKITFDDYIACCV  138 (172)
T ss_dssp             CCSEECHHHHHHHHHHTTCCCCHHHHHHHHHHTC--SSSSEEHHHHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH--hcCCcCHHHHHHHHH
Confidence            9999999999999999999999999999999996  568899999999875

>d1alva_ a.39.1.8 (A:) Calpain small (regulatory) subunit (domain VI) {Pig (Sus scrofa) [TaxId: 9823]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Calpain small (regulatory) subunit (domain VI)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.66  E-value=1.1e-15  Score=128.10  Aligned_cols=119  Identities=16%  Similarity=0.227  Sum_probs=103.4

Q ss_pred             hCCCcccHHHHHHHHHhhcC-------CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhC
Q psy2947         309 EKGGKLSFPDFLKVMHTHSK-------AEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAAD  381 (441)
Q Consensus       309 ~~~g~i~~~ef~~~~~~~~~-------~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D  381 (441)
                      +.+|.|+.+|+..++.....       ...+.+.++.+++.+|.|++|.|+++||.+++...       ..+..+|+.+|
T Consensus        15 ~~dg~I~~~EL~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~d~d~~g~i~~~ef~~~~~~~-------~~~~~~f~~~D   87 (173)
T d1alva_          15 GDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNI-------KKWQAIYKQFD   87 (173)
T ss_dssp             GGGTSBCHHHHHHHHHHHHHTCSTTCCSCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHH-------HHHHHHHHHHC
T ss_pred             CCCCcCCHHHHHHHHHHhCCCcchhhhccCCHHHHHHHHHHhccCCCCcccchhhhhhhhhh-------hHHHHHHHHhc
Confidence            44899999999999986532       12456889999999999999999999999988754       56888999999


Q ss_pred             CCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         382 TTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       382 ~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      .+++|.|+.+||+.+++..|..++++.++.++. +|.|++|.|+|+||+++|.+
T Consensus        88 ~d~~G~I~~~el~~~L~~~g~~~~~~~~~~~~~-~d~d~~G~i~~~EF~~~~~~  140 (173)
T d1alva_          88 VDRSGTIGSSELPGAFEAAGFHLNEHLYSMIIR-RYSDEGGNMDFDNFISCLVR  140 (173)
T ss_dssp             TTCCSSBCTTTHHHHHHHHTCCCCHHHHHHHHH-HHTCSSSCBCHHHHHHHHHH
T ss_pred             cCCCCeecHHHHHHHHHHHHHhhHHHHHHHhhc-cccCCCCeEeHHHHHHHHHH
Confidence            999999999999999999999999988877665 55699999999999998843

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.2e-16  Score=129.64  Aligned_cols=121  Identities=20%  Similarity=0.278  Sum_probs=98.2

Q ss_pred             CCCCCccC--CCCccCCCCCCCCCCcccEEeccCCCcCcccCCCCCCCEEEccCC-CCCcCCcC-ccCCCCCcEEEccCC
Q psy2947          39 CQRNCSLE--VGGICSHIWIPQYFSHAFLLSLSYTPIGRRIFKCDTVEVLSLKSN-SLTSLPPD-IGRLTNLRVLCLTDN  114 (441)
Q Consensus        39 C~~~c~~~--~~~~c~~~~~~~~l~~L~~l~l~~n~i~~~~~~l~~L~~L~l~~n-~l~~lp~~-~~~l~~L~~L~l~~n  114 (441)
                      ||..|.|.  .++.|...+.              ..+|..+..+++|+.|++++| .|+.++.. |.++++|+.|++++|
T Consensus         1 CP~~C~c~~~~~l~c~~~~~--------------~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N   66 (156)
T d2ifga3           1 CPDACCPHGSSGLRCTRDGA--------------LDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS   66 (156)
T ss_dssp             CCSSSCCSSSSCEECCSSCC--------------CTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS
T ss_pred             CcCCCCcCCCCeEEecCCCC--------------ccCcccccCccccCeeecCCCccccccCchhhccccccCcceeecc
Confidence            88888884  2344543322              145677788899999999866 59988876 999999999999999


Q ss_pred             cCCCCCC-chhhhcCCCCCEEEccCCCCCccchhhcCCCCCCEEEccCCcCccCcccccccc
Q psy2947         115 CLQNASI-PFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHS  175 (441)
Q Consensus       115 ~l~~~~~-p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~  175 (441)
                      +|+  .+ |..|..+++|++|+|++|+|+.+|..+....+|+.|+|++|++.|.|.+.|+..
T Consensus        67 ~l~--~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~C~C~~~~l~~  126 (156)
T d2ifga3          67 GLR--FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQR  126 (156)
T ss_dssp             CCC--EECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCCCCGGGHHHHH
T ss_pred             ccC--CcccccccccccccceeccCCCCcccChhhhccccccccccCCCcccCCchHHHHHH
Confidence            998  66 456899999999999999999999665555689999999999999998776544

>d2sasa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Sarcoplasmic calcium-binding protein
species: Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]

Probab=99.64  E-value=3.2e-16  Score=132.99  Aligned_cols=154  Identities=16%  Similarity=0.202  Sum_probs=113.2

Q ss_pred             ecccchHHHHHhhhc-cccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCHHHH
Q psy2947         260 TFKTPYLEFRECFFL-FARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEV  336 (441)
Q Consensus       260 l~~~~~~~l~~~f~~-~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~  336 (441)
                      +++.+..+++.+|.. +|.+  |.| +..|+..++..+.            .-..+......+.....      .....+
T Consensus         2 lt~~q~~~i~~~F~~~~D~d~dG~I-s~~Ef~~~l~~~~------------~~~~~~~~~~~~~~~~~------~~~~~~   62 (185)
T d2sasa_           2 LNDFQKQKIKFTFDFFLDMNHDGSI-QDNDFEDMMTRYK------------EVNKGSLSDADYKSMQA------SLEDEW   62 (185)
T ss_dssp             CCHHHHHHHHHHHHHHTCTTCSSEE-CHHHHHHHHHHHH------------HHHGGGSCHHHHHHHHH------HHHHHH
T ss_pred             cCHHHHHHHHHHHHHhhcCCCCCcC-CHHHHHHHHHHhc------------cccCCCcccHHHHHHHH------HHHHHH
Confidence            456677888899975 5765  788 8899988887653            11111111222221111      012345


Q ss_pred             HHHHHhhcCCCCCcccHHHHHHHHHhhccCCC--------ChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHH
Q psy2947         337 VDAFKAADTTKSGKLSFPDFLKVMHTHSKAED--------IPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKE  408 (441)
Q Consensus       337 ~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~--------~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~  408 (441)
                      ..++...|.+++|.|++++|..++........        ....+..+|+.+|.|++|+|+.+||+.++..+|  +++++
T Consensus        63 ~~~~~~~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~E~~~~l~~~~--l~~~~  140 (185)
T d2sasa_          63 RDLKGRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQNYCKNFQ--LQCAD  140 (185)
T ss_dssp             HHHHHHHCTTCSSCEEHHHHHHHHHHHHHTCCSGGGSCTTHHHHHHHHHHHHCTTSSSCCCHHHHHHHTTSSC--CCCSS
T ss_pred             HHHHHHhCcCCCCcEeeeHhhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHccCCCccCCHHHHHHHHHHcC--CCHHH
Confidence            66788899999999999999998865432211        134688899999999999999999999998776  78889


Q ss_pred             HHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         409 VDQIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       409 ~~~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      ++.+|..+|.|++|.|+|+||++++.
T Consensus       141 ~~~~f~~~D~d~dG~i~~~EF~~~~~  166 (185)
T d2sasa_         141 VPAVYNVITDGGKVTFDLNRYKELYY  166 (185)
T ss_dssp             HHHHHHHHHTTTTSCCSHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCCcHHHHHHHHH
Confidence            99999999999999999999998774

>d1qxpa2 a.39.1.8 (A:515-702) Calpain large subunit, C-terminal domain (domain IV) {Rat (Rattus norvegicus), mu-type [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Calpain large subunit, C-terminal domain (domain IV)
species: Rat (Rattus norvegicus), mu-type [TaxId: 10116]

Probab=99.63  E-value=1.4e-16  Score=134.65  Aligned_cols=118  Identities=14%  Similarity=0.197  Sum_probs=99.9

Q ss_pred             hCCCcccHHHHHHHHHhhcC-------CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhC
Q psy2947         309 EKGGKLSFPDFLKVMHTHSK-------AEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAAD  381 (441)
Q Consensus       309 ~~~g~i~~~ef~~~~~~~~~-------~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D  381 (441)
                      +++|.|+.+|+..++.....       ...+.+.++.+++.+|.|++|.|+++||..++...       ..++.+|+.+|
T Consensus        31 ~~dG~Is~~EL~~~L~~~~~~~~~~~~~~~s~e~~~~li~~~D~d~~G~i~~~EF~~l~~~~-------~~~~~~F~~~D  103 (188)
T d1qxpa2          31 GDDMEISVKELQTILNRIISKHKDLRTNGFSLESCRSMVNLMDRDGNGKLGLVEFNILWNRI-------RNYLTIFRKFD  103 (188)
T ss_dssp             CSSSSCCCSCTTTTTCC---------CCCCCHHHHHHHHHHHCC--CCCCCSSSHHHHHHHH-------HHHHHHHGGGC
T ss_pred             CCCCEECHHHHHHHHHHhCccccccccccCCHHHHHHHHHHhcCCCCCcccHHHHHHHHhhh-------HHHHHHHHHhC
Confidence            45899999999888764322       12356789999999999999999999999988765       67889999999


Q ss_pred             CCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         382 TTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       382 ~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      +|++|.|+..||+.+++.+|..++++.++.++.+. .+++|.|+|+||+.+|.
T Consensus       104 ~d~sG~i~~~El~~~l~~~g~~~~~~~~~~l~~~~-~~~dg~i~f~eFi~~~~  155 (188)
T d1qxpa2         104 LDKSGSMSAYEMRMAIEAAGFKLPCQLHQVIVARF-ADDELIIDFDNFVRCLV  155 (188)
T ss_dssp             TTCCSCCBHHHHHHHHHHTTEECCHHHHHHHHHHT-SCSSSBCCHHHHHHHHH
T ss_pred             CCCCCEECHHHHHHHHHHhhhcCCHHHHHHHHHHh-cCCCCcCCHHHHHHHHH
Confidence            99999999999999999999999998888888875 69999999999999874

>d1qv0a_ a.39.1.5 (A:) Calcium-regulated photoprotein {Hydrozoa (Obelia longissima), obelin [TaxId: 32570]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-regulated photoprotein
species: Hydrozoa (Obelia longissima), obelin [TaxId: 32570]

Probab=99.62  E-value=3.4e-15  Score=126.99  Aligned_cols=144  Identities=19%  Similarity=0.227  Sum_probs=100.6

Q ss_pred             ccchHHHHHhhhccccC--CCccCHHHHHHHHH-----HcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCHH
Q psy2947         262 KTPYLEFRECFFLFARN--GTIKTLDELSVIMR-----SLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPK  334 (441)
Q Consensus       262 ~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~-----~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~  334 (441)
                      +..+.+++++|..+|.+  |+| +.+|+...+.     .++..++..+....+                           
T Consensus        10 ~~~i~r~k~~F~~~D~d~dG~I-~~~E~~~~~~~~~~~~l~~~~~~~~~~~~~---------------------------   61 (189)
T d1qv0a_          10 PRWIKRHKHMFDFLDINGNGKI-TLDEIVSKASDDICAKLEATPEQTKRHQVC---------------------------   61 (189)
T ss_dssp             HHHHHHHHHHHHHHCTTCSSCB-CHHHHHHHHHHTHHHHTTCCHHHHHHHHHH---------------------------
T ss_pred             HHHHHHHHHHHHHHcCCCCCcC-cHHHHHHHHHHHHHHHcCCCchhHHHHHHH---------------------------
Confidence            45677888888888875  777 7888866543     334333333322222                           


Q ss_pred             HHHHHHHhhcCCCCCcccHHHHHHHHHhhc----------cCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCC
Q psy2947         335 EVVDAFKAADTTKSGKLSFPDFLKVMHTHS----------KAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGL  404 (441)
Q Consensus       335 ~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~----------~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l  404 (441)
                       ....+...+....+.|+++++...+....          ......+.+..+|+.+|++++|+|+.+||+.++..+|..+
T Consensus        62 -~~~~~~~~~~~~~~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~is~~E~~~~l~~~g~~~  140 (189)
T d1qv0a_          62 -VEAFFRGCGMEYGKEIAFPQFLDGWKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGSGTITLDEWKAYGKISGISP  140 (189)
T ss_dssp             -HHHHHHHTTCCTTCCBCHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTC----CEECHHHHHHHHHHHSSCC
T ss_pred             -HHHHhhhccccCCCceehHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHccCCCCcccchhhHHHHHhcCCCC
Confidence             11223445666777777777776654321          0111134567799999999999999999999999999999


Q ss_pred             CHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         405 SSKEVDQIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       405 ~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      ++++++.+|+.+|.|+||.|+|+||++++.
T Consensus       141 ~~~~~~~lf~~~D~d~dG~Is~~EF~~~~~  170 (189)
T d1qv0a_         141 SQEDCEATFRHCDLDNAGDLDVDEMTRQHL  170 (189)
T ss_dssp             CHHHHHHHHHHSCCCTTSCEEHHHHHHHHH
T ss_pred             CHHHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence            999999999999999999999999999874

>d1nyaa_ a.39.1.5 (A:) Calerythrin {Saccharopolyspora erythraea [TaxId: 1836]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calerythrin
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=99.61  E-value=1.2e-14  Score=121.94  Aligned_cols=148  Identities=14%  Similarity=0.165  Sum_probs=110.6

Q ss_pred             chHHHHHhhhccccC--CCccCHHHHHHHHHHcC----CCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCHHHHH
Q psy2947         264 PYLEFRECFFLFARN--GTIKTLDELSVIMRSLG----MSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVV  337 (441)
Q Consensus       264 ~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~----~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~  337 (441)
                      ..+++++.|..+|.+  |+| +.+|++.++..+.    ..+...++             ......+         ...+.
T Consensus         5 ~~~~l~~~F~~~D~d~dG~I-s~~Ef~~~l~~~~~~~~~~~~~~~~-------------~~~~~~~---------~~~~~   61 (176)
T d1nyaa_           5 ASDRLKKRFDRWDFDGNGAL-ERADFEKEAQHIAEAFGKDAGAAEV-------------QTLKNAF---------GGLFD   61 (176)
T ss_dssp             HHHHHHHHHHHCCSSCCSSB-CSHHHHHHHHHHHHHTSSCSSSHHH-------------HHHHHHH---------HHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCcC-cHHHHHHHHHHHHHHcCCcccHHHH-------------HHHHHHH---------HHHHH
Confidence            456778888888875  778 7888888876542    11111111             1111111         12345


Q ss_pred             HHHHhhcCCCCCcccHHHHHHHHHhhccCCCC-------hHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHH
Q psy2947         338 DAFKAADTTKSGKLSFPDFLKVMHTHSKAEDI-------PKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVD  410 (441)
Q Consensus       338 ~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~-------~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~  410 (441)
                      .++...|.+++|.|++.++...+.........       ...++.+|..+|.+++|.|+.+||++++..+|  +++++++
T Consensus        62 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~Is~~E~~~~~~~~~--~~~~~~~  139 (176)
T d1nyaa_          62 YLAKEAGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADEFAAWLTALG--MSKAEAA  139 (176)
T ss_dssp             HHHHHHTSCTTCCBCHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTCSSCCSEEEHHHHHHHHHHTT--CCHHHHH
T ss_pred             HHHHHhcCCCCCcccHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHccCCChhhhHHHHHHHHHhcC--CcHHHHH
Confidence            66778899999999999999877665433221       24577899999999999999999999999887  7899999


Q ss_pred             HHHHHhCCCCCCceeHHHHHHHHhcc
Q psy2947         411 QIFREANVTMNSKVRYEDFVKIACAP  436 (441)
Q Consensus       411 ~l~~~~d~d~dg~i~~~ef~~~l~~~  436 (441)
                      .+|+.+|.|++|.|+|+||+.++..-
T Consensus       140 ~~f~~~D~d~dG~i~~~Ef~~~~~~~  165 (176)
T d1nyaa_         140 EAFNQVDTNGNGELSLDELLTAVRDF  165 (176)
T ss_dssp             HHHHHHCTTCSSEEEHHHHHHHHSCC
T ss_pred             HHHHHHCCCCCCcEeHHHHHHHHHHH
Confidence            99999999999999999999998653

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=1.6e-15  Score=119.20  Aligned_cols=101  Identities=29%  Similarity=0.324  Sum_probs=89.5

Q ss_pred             cEEeccCCCcC--cccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEccCCCC
Q psy2947          64 FLLSLSYTPIG--RRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLL  141 (441)
Q Consensus        64 ~~l~l~~n~i~--~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l  141 (441)
                      +.|+|++|.|.  +.+..+++|++|++++|+|+.+|+.++.+++|+.|++++|.|+  .+| .+..+++|++|++++|+|
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~--~l~-~~~~l~~L~~L~l~~N~i   77 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE--NVD-GVANLPRLQELLLCNNRL   77 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC--CCG-GGTTCSSCCEEECCSSCC
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCccCcchhhhhhhhccccccccccccc--ccC-ccccccccCeEECCCCcc
Confidence            57899999553  3577889999999999999999999999999999999999998  776 589999999999999999


Q ss_pred             Cccc--hhhcCCCCCCEEEccCCcCccC
Q psy2947         142 DALP--GFLLSMPQLDTVYRHGNHNYFK  167 (441)
Q Consensus       142 ~~lp--~~~~~l~~L~~L~l~~N~~~~~  167 (441)
                      +.+|  ..+..+++|+.|++++|++...
T Consensus        78 ~~~~~~~~l~~~~~L~~L~l~~N~i~~~  105 (124)
T d1dcea3          78 QQSAAIQPLVSCPRLVLLNLQGNSLCQE  105 (124)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             CCCCCchhhcCCCCCCEEECCCCcCCcC
Confidence            9887  5688899999999999997543

>d1rwya_ a.39.1.4 (A:) Parvalbumin {Rat (Rattus rattus) [TaxId: 10117]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.60  E-value=4.6e-15  Score=113.29  Aligned_cols=99  Identities=18%  Similarity=0.339  Sum_probs=83.8

Q ss_pred             CHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhC---CCCCHHH
Q psy2947         332 IPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWG---EGLSSKE  408 (441)
Q Consensus       332 ~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~---~~l~~~~  408 (441)
                      ..+++.+++..++.  +|.|++.||..++...   ....+.++.+|+.+|+|++|+|+.+||+.+++.++   ..+++++
T Consensus         7 ~~~~i~~~~~~~~~--~~~i~f~eF~~~~~~~---~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~l~~~~~~~~~~e   81 (109)
T d1rwya_           7 SAEDIKKAIGAFTA--ADSFDHKKFFQMVGLK---KKSADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKE   81 (109)
T ss_dssp             CHHHHHHHHHTTCS--TTCCCHHHHHHHHTGG---GSCHHHHHHHHHHHSTTCSSEECHHHHHTHHHHHCTTCCCCCHHH
T ss_pred             CHHHHHHHHHhccc--CCCcCHHHHHHHHccc---cCCHHHHHHHhhcccCCCCCcCcHHHHHHHHHHhccccccCCHHH
Confidence            34566777776654  4789999998887543   23467899999999999999999999999999874   4689999


Q ss_pred             HHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         409 VDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       409 ~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      ++.+++.+|.|+||+|+|+||+++|.+
T Consensus        82 ~~~~~~~~D~d~dG~i~~~EF~~~m~~  108 (109)
T d1rwya_          82 TKTLMAAGDKDGDGKIGVEEFSTLVAE  108 (109)
T ss_dssp             HHHHHHHHCTTCSSSEEHHHHHHHHHT
T ss_pred             HHHHHHHhCCCCCCeEeHHHHHHHHHh
Confidence            999999999999999999999999875

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.60  E-value=1.9e-15  Score=138.87  Aligned_cols=80  Identities=24%  Similarity=0.394  Sum_probs=66.2

Q ss_pred             cCCCCCccC-CCCccCCC---CCCCCC-CcccEEeccCCC---cCc-ccCCCCCCCEEEccCCCCCcCCc-CccCCCCCc
Q psy2947          38 ACQRNCSLE-VGGICSHI---WIPQYF-SHAFLLSLSYTP---IGR-RIFKCDTVEVLSLKSNSLTSLPP-DIGRLTNLR  107 (441)
Q Consensus        38 ~C~~~c~~~-~~~~c~~~---~~~~~l-~~L~~l~l~~n~---i~~-~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~  107 (441)
                      .||..|.|. .++.|++.   .+|..+ ++|++|+|++|.   +|+ .+.++++|++|++++|.+..+++ .|..+++|+
T Consensus         3 ~~p~~c~c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~   82 (305)
T d1xkua_           3 VCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE   82 (305)
T ss_dssp             CCCTTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred             CCCCCCEecCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccC
Confidence            599999995 45889873   345443 689999999994   454 57889999999999999998755 599999999


Q ss_pred             EEEccCCcCC
Q psy2947         108 VLCLTDNCLQ  117 (441)
Q Consensus       108 ~L~l~~n~l~  117 (441)
                      .|++++|+++
T Consensus        83 ~L~l~~n~l~   92 (305)
T d1xkua_          83 RLYLSKNQLK   92 (305)
T ss_dssp             EEECCSSCCS
T ss_pred             EecccCCccC
Confidence            9999999886

>d2scpa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein {Sandworm (Nereis diversicolor) [TaxId: 126592]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Sarcoplasmic calcium-binding protein
species: Sandworm (Nereis diversicolor) [TaxId: 126592]

Probab=99.60  E-value=4.2e-15  Score=124.62  Aligned_cols=90  Identities=14%  Similarity=0.190  Sum_probs=76.7

Q ss_pred             hcCCCCCcccHHHHHHHHHhhccCCCC----hHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Q psy2947         343 ADTTKSGKLSFPDFLKVMHTHSKAEDI----PKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANV  418 (441)
Q Consensus       343 ~D~d~~g~i~~~ef~~~~~~~~~~~~~----~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~  418 (441)
                      .|.+++|.|+++||...+.........    ...+..+|+.+|.|++|.|+.+||+.+++..+  ++.+++..+|+.+|.
T Consensus        62 ~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~Is~~E~~~~l~~~~--~~~~~~~~~f~~~D~  139 (174)
T d2scpa_          62 TAVAGGKGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGMLG--LDKTMAPASFDAIDT  139 (174)
T ss_dssp             GGTTTTSCEEHHHHHHHHHHHTSCGGGTHHHHTHHHHHHHHHCTTCSSSEEHHHHHHHHHHTT--CCGGGHHHHHHHHCT
T ss_pred             cccCCCCcCcHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHCCCccccCCHHHHHHHHHHHh--hhhHHHHHHHhhcCC
Confidence            367888999999999988776443322    23577899999999999999999999999887  677889999999999


Q ss_pred             CCCCceeHHHHHHHHh
Q psy2947         419 TMNSKVRYEDFVKIAC  434 (441)
Q Consensus       419 d~dg~i~~~ef~~~l~  434 (441)
                      |+||.|+++||+.++.
T Consensus       140 d~dG~Is~~Ef~~~~~  155 (174)
T d2scpa_         140 NNDGLLSLEEFVIAGS  155 (174)
T ss_dssp             TCSSEECHHHHHHHHH
T ss_pred             CCCCcEeHHHHHHHHH
Confidence            9999999999999874

>d1jfja_ a.39.1.5 (A:) EHCABP {Entamoeba (Entamoeba histolytica) [TaxId: 5759]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: EHCABP
species: Entamoeba (Entamoeba histolytica) [TaxId: 5759]

Probab=99.59  E-value=2e-15  Score=120.70  Aligned_cols=124  Identities=15%  Similarity=0.173  Sum_probs=105.4

Q ss_pred             HHHhhhccccC--CCccCHHHHHHHHHHcCCCcCHHHHHHHHH----hCCCcccHHHHHHHHHhhcCCCC--CHHHHHHH
Q psy2947         268 FRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLA----EKGGKLSFPDFLKVMHTHSKAED--IPKEVVDA  339 (441)
Q Consensus       268 l~~~f~~~d~~--G~i~~~~el~~~~~~~~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~~~~~--~~~~~~~~  339 (441)
                      .+.+|..+|.+  |.| +..|+..++..++..++..++..++.    +++|.|+++||.+++........  ....++.+
T Consensus         2 ae~~F~~~D~d~dG~i-s~~E~~~~l~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~Ef~~~~~~~~~~~~~~~~~~~~~~   80 (134)
T d1jfja_           2 AEALFKEIDVNGDGAV-SYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYGSIQGQDLSDDKIGLKVL   80 (134)
T ss_dssp             HHHHHHHHCTTCSSEE-EHHHHHHHHHTTCCSSHHHHHHHHHHHHCSSCCSEEEHHHHHHHTTCSSCCSSHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCcCCC-cHHHHHHHHHHcCCCCCHHHHHHHHHHhhhccccccccccccccccccccccccccccccccc
Confidence            35789999986  889 89999999999999888888877764    68999999999999875544322  24568899


Q ss_pred             HHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy2947         340 FKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVL  397 (441)
Q Consensus       340 f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l  397 (441)
                      |+.+|.+++|.|+.+|+..++...     ..+.+..+|+.+|.|+||.|+++||.++|
T Consensus        81 F~~~D~~~~g~i~~~el~~~~~~~-----~~~~~~~~~~~~D~d~dG~is~~EF~~~~  133 (134)
T d1jfja_          81 YKLMDVDGDGKLTKEEVTSFFKKH-----GIEKVAEQVMKADANGDGYITLEEFLEFS  133 (134)
T ss_dssp             HHHHCCSSSSEEEHHHHHHHHTTT-----TCHHHHHHHHHHHCSSSSEEEHHHHHHHH
T ss_pred             ccccccccCCcccHHHHHHHHHhc-----CcHHHHHHHHHHCCCCCCCCCHHHHHHHh
Confidence            999999999999999999998754     24678889999999999999999999987

>d1jbaa_ a.39.1.5 (A:) Guanylate cyclase activating protein 2, GCAP-2 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Guanylate cyclase activating protein 2, GCAP-2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.58  E-value=1e-14  Score=123.95  Aligned_cols=136  Identities=12%  Similarity=0.186  Sum_probs=108.8

Q ss_pred             ccchHHHHHhhhccccCCCccCHHHHHHHHHHcCCCcCHHHHHHHHH----hCCCcccHHHHHHHHHhhcCCCCCHHHHH
Q psy2947         262 KTPYLEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLA----EKGGKLSFPDFLKVMHTHSKAEDIPKEVV  337 (441)
Q Consensus       262 ~~~~~~l~~~f~~~d~~G~i~~~~el~~~~~~~~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~~~~~~~~~~~  337 (441)
                      ..+++.+.+.|...+++|+| +..|++.++...+...+...+..++.    +++|.|+++||+..+..... ....+.++
T Consensus        20 ~~ei~~~~~~F~~~~~~G~i-~~~Ef~~~l~~~~~~~~~~~~~~lf~~~D~d~dG~I~f~Ef~~~l~~~~~-~~~~~~~~   97 (189)
T d1jbaa_          20 AAQLQEWYKKFLEECPSGTL-FMHEFKRFFKVPDNEEATQYVEAMFRAFDTNGDNTIDFLEYVAALNLVLR-GTLEHKLK   97 (189)
T ss_dssp             HHHHHHHHHHHHSSSTTCCE-EHHHHHHHHHCCSSSTTHHHHHHHHHHHCCSSSSEECHHHHHHHHHHHSS-CCCTHHHH
T ss_pred             HHHHHHHHHHhcccCCCCee-eHHHHHHHHHHcCCCccHHHHHHHHHHhccCCCCeEeehhHHHHHHhhcc-cchHHHHH
Confidence            34455555555555567999 89999999998887777777777775    68999999999999987754 45678899


Q ss_pred             HHHHhhcCCCCCcccHHHHHHHHHhhcc---------------C-CCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         338 DAFKAADTTKSGKLSFPDFLKVMHTHSK---------------A-EDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       338 ~~f~~~D~d~~g~i~~~ef~~~~~~~~~---------------~-~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      .+|+.||.|++|.|++.|+..++.....               . ...++.++.+|+.+|.|+||.||++||+++++.
T Consensus        98 ~~F~~~D~d~~g~i~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~if~~~D~d~dG~Is~~EF~~~~~~  175 (189)
T d1jbaa_          98 WTFKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGKLLTPEEVVDRIFLLVDENGDGQLSLNEFVEGARR  175 (189)
T ss_dssp             HHHHHHCSSCSSCBCHHHHHHHHHHHHHHHHHSSCCTTSSTTTCCCCHHHHHHHHHHHHCCSCCSCBCHHHHHHHHTT
T ss_pred             HHHhhhccCCCCcccHhHHHHHHHHHHHhhccccccchhhhhccccchHHHHHHHHHHhCCCCCCcEeHHHHHHHHHh
Confidence            9999999999999999999987754310               0 111356788999999999999999999999964

>d1fpwa_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Frequenin (neuronal calcium sensor 1)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=6.3e-15  Score=125.27  Aligned_cols=139  Identities=15%  Similarity=0.276  Sum_probs=113.7

Q ss_pred             eecccchHHHHHhhhccccCCCccCHHHHHHHHHHcCCCcCHHH-HHHHHH----hCCCcccHHHHHHHHHhhcCCCCCH
Q psy2947         259 FTFKTPYLEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAE-LKKYLA----EKGGKLSFPDFLKVMHTHSKAEDIP  333 (441)
Q Consensus       259 ~l~~~~~~~l~~~f~~~d~~G~i~~~~el~~~~~~~~~~~~~~~-~~~~~~----~~~g~i~~~ef~~~~~~~~~~~~~~  333 (441)
                      .++..++..+.+.|...+.+|.+ +..++..++..++......+ ..+++.    +++|.|+++||+.++..... ...+
T Consensus        21 ~fs~~Ei~~l~~~F~~~~~~G~i-~~~ef~~~~~~~~~~~~~~~~~~~if~~~D~~~~G~I~~~Ef~~~~~~~~~-~~~~   98 (190)
T d1fpwa_          21 YFDRREIQQWHKGFLRDCPSGQL-AREDFVKIYKQFFPFGSPEDFANHLFTVFDKDNNGFIHFEEFITVLSTTSR-GTLE   98 (190)
T ss_dssp             CSTHHHHHHHHHHHHHHCTTCCE-EHHHHHHHHHHHCTTSCCSHHHHHHHHTCCSSCSSEECHHHHHHHHHHHSC-CCST
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCc-cHHHHHHHHHHHCCCCChHHHHHHHHHHhCcCCCCcccHHHHHHHHHHHcc-CchH
Confidence            35678888888889888888999 89999999998876554433 345554    68999999999999987754 4667


Q ss_pred             HHHHHHHHhhcCCCCCcccHHHHHHHHHhhcc-----------CCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTHSK-----------AEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       334 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~-----------~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      +.++.+|+.||.|++|.|+++|+..++.....           ....++.++.+|+.+|.|+||.|+++||+++++.
T Consensus        99 e~~~~~F~~~D~d~dG~is~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~if~~~D~d~dG~Is~~EF~~~~~~  175 (190)
T d1fpwa_          99 EKLSWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEATPEMRVKKIFKLMDKNEDGYITLDEFREGSKV  175 (190)
T ss_dssp             HHHHHHHHHHCSSCSSEEEHHHHHHHHHHHHTTSCSTTSSSCCCCCHHHHHHHHHHHHTTTCSSEEEHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCCCCcCcHHHHHHHHHHHHHhcccccCCCchhhhHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence            99999999999999999999999998876531           1112467889999999999999999999999875

>d2pvba_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Pike (Esox lucius) [TaxId: 8010]

Probab=99.58  E-value=5.7e-15  Score=112.09  Aligned_cols=98  Identities=18%  Similarity=0.294  Sum_probs=81.4

Q ss_pred             CHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhC---CCCCHHH
Q psy2947         332 IPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWG---EGLSSKE  408 (441)
Q Consensus       332 ~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~---~~l~~~~  408 (441)
                      +.+++..+++..+.+  |.|++.||...+...   ....++++.+|+.+|++++|+|+.+||+++++.++   ..+++++
T Consensus         6 s~~di~~~~~~~~~~--gsi~~~eF~~~~~l~---~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~~~~~~~   80 (107)
T d2pvba_           6 KDADVAAALAACSAA--DSFKHKEFFAKVGLA---SKSLDDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAE   80 (107)
T ss_dssp             CHHHHHHHHHHTCST--TCCCHHHHHHHHTGG---GSCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTSCCCCHHH
T ss_pred             CHHHHHHHHHhccCC--CCcCHHHHHHHHhcc---cCCHHHHHHHHHhhccCCCCcCcHHHHHHHHHHhhcccccCCHHH
Confidence            455566666666554  569999998877643   23467899999999999999999999999998874   5689999


Q ss_pred             HHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         409 VDQIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       409 ~~~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      ++.+|+.+|.|+||.|+|+||+.+|.
T Consensus        81 ~~~l~~~~D~d~dG~I~~~EF~~~m~  106 (107)
T d2pvba_          81 TKAFLADGDKDGDGMIGVDEFAAMIK  106 (107)
T ss_dssp             HHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCcEeHHHHHHHHc
Confidence            99999999999999999999999885

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.58  E-value=1.1e-14  Score=123.99  Aligned_cols=138  Identities=20%  Similarity=0.217  Sum_probs=105.9

Q ss_pred             cEEeccCC---CcCcccCCCCCCCEEEccCCCCCc-CCcC-ccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEccC
Q psy2947          64 FLLSLSYT---PIGRRIFKCDTVEVLSLKSNSLTS-LPPD-IGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDN  138 (441)
Q Consensus        64 ~~l~l~~n---~i~~~~~~l~~L~~L~l~~n~l~~-lp~~-~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~  138 (441)
                      +.++.+++   .||..+.  +++++|+|++|+|+. ++.. |..+++|+.|++++|.+. +..+..+..+++|++|+|++
T Consensus        11 ~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~-~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccc-cccccccccccccceeeecc
Confidence            46788887   6676664  689999999999984 5444 889999999999999998 55566788999999999999


Q ss_pred             CCCCccc-hhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHHHhhcccccCCchhhhhhhhcccccccc
Q psy2947         139 NLLDALP-GFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEVLRKQKKLHQPSRLQDLAVQSVIASKEN  217 (441)
Q Consensus       139 n~l~~lp-~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~l~~~~~~~~p~~l~~l~~l~~l~l~~n  217 (441)
                      |+|..+| ..|.++++|++|+|++|++....                               |..+..+++|+.+++++|
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~-------------------------------~~~f~~l~~L~~l~L~~N  136 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVM-------------------------------PGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEEC-------------------------------TTSSTTCTTCCEEECTTC
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccC-------------------------------HHHhcCCccccccccccc
Confidence            9999997 67899999999999999963321                               223456667778888888


Q ss_pred             cCCCCCCCchhhhHHHhh
Q psy2947         218 FFEPGLFPGPLVDYIARE  235 (441)
Q Consensus       218 ~~~~~~~p~~~~~~l~~~  235 (441)
                      ++.+..-...+..++...
T Consensus       137 ~~~~~~~~~~~~~~l~~~  154 (192)
T d1w8aa_         137 PFNCNCHLAWFAEWLRKK  154 (192)
T ss_dssp             CBCCSGGGHHHHHHHHHH
T ss_pred             ccccccchHHHhhhhhhh
Confidence            777543233344444443

>d1pvaa_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Pike (Esox lucius) [TaxId: 8010]

Probab=99.56  E-value=1.4e-14  Score=110.22  Aligned_cols=97  Identities=20%  Similarity=0.282  Sum_probs=80.2

Q ss_pred             HHHHHHHHH--hCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhc--cCCCChHHHHH
Q psy2947         300 IAELKKYLA--EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHS--KAEDIPKEVVD  375 (441)
Q Consensus       300 ~~~~~~~~~--~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~--~~~~~~~~~~~  375 (441)
                      ..++.+++.  +++|.|+|+||..++...   ....+.++.+|+.||.|++|+|+.+|++.++..+.  ....++++++.
T Consensus         8 ~eeI~~~~~~~d~dG~idf~EF~~~~~~~---~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~l~~~g~~ls~~ev~~   84 (109)
T d1pvaa_           8 ADDIKKALDAVKAEGSFNHKKFFALVGLK---AMSANDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKA   84 (109)
T ss_dssp             HHHHHHHHHHTCSTTCCCHHHHHHHHTCT---TSCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTCCCCCHHHHHH
T ss_pred             HHHHHHHHHhcCCCCCCcHHHHHHHHHHc---cCCHHHHHHHhhCccCCCcCeEcHHHHHHHHHHhhhcCCCCCHHHHHH
Confidence            344444443  478999999999887632   45678899999999999999999999999988764  23456789999


Q ss_pred             HHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         376 AFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       376 ~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      +|+.+|.|+||.|+++||.++|.+
T Consensus        85 ~~~~~D~d~dG~I~~~EF~~~m~~  108 (109)
T d1pvaa_          85 FLKAADKDGDGKIGIDEFETLVHE  108 (109)
T ss_dssp             HHHHHCTTCSSSBCHHHHHHHHHC
T ss_pred             HHHHHCCCCcCcEeHHHHHHHHHh
Confidence            999999999999999999999863

>d1g8ia_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Frequenin (neuronal calcium sensor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=9.1e-15  Score=123.99  Aligned_cols=138  Identities=14%  Similarity=0.221  Sum_probs=111.3

Q ss_pred             ecccchHHHHHhhhccccCCCccCHHHHHHHHHHcCCCcCHHHH-HHHH----HhCCCcccHHHHHHHHHhhcCCCCCHH
Q psy2947         260 TFKTPYLEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAEL-KKYL----AEKGGKLSFPDFLKVMHTHSKAEDIPK  334 (441)
Q Consensus       260 l~~~~~~~l~~~f~~~d~~G~i~~~~el~~~~~~~~~~~~~~~~-~~~~----~~~~g~i~~~ef~~~~~~~~~~~~~~~  334 (441)
                      ++..++..+.+.|...+.+|.+ +..++..++..++.......+ ..++    .+++|.|+++||+.++...... ...+
T Consensus        19 fs~~Ei~~l~~~F~~~~~~g~i-~~~ef~~~~~~~~~~~~~~~~~~~if~~~d~~~dg~I~~~EF~~~l~~~~~~-~~~e   96 (187)
T d1g8ia_          19 FTEKEVQQWYKGFIKDCPSGQL-DAAGFQKIYKQFFPFGDPTKFATFVFNVFDENKDGRIEFSEFIQALSVTSRG-TLDE   96 (187)
T ss_dssp             SCHHHHHHHHHHHHHHCTTSEE-EHHHHHHHHHHHCTTSCTHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHHHC-CHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCCc-CHHHHHHHHHHhcCCCCHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHhccC-chhh
Confidence            5677888888888888889999 899999999888766554333 3344    4789999999999999876543 4577


Q ss_pred             HHHHHHHhhcCCCCCcccHHHHHHHHHhhcc-----------CCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         335 EVVDAFKAADTTKSGKLSFPDFLKVMHTHSK-----------AEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       335 ~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~-----------~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      .++.+|+.||.|++|.|+++|+..++.....           ....++.++.+|+.+|.|+||.|+++||++++..
T Consensus        97 ~l~~~F~~~D~d~dG~i~~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~if~~~D~d~dG~Is~~EF~~~~~~  172 (187)
T d1g8ia_          97 KLRWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPEKRVDRIFAMMDKNADGKLTLQEFQEGSKA  172 (187)
T ss_dssp             HHHHHHHHHCTTCSSEEEHHHHHHHHHHHHHHC-----CCGGGSSHHHHHHHHHHHHCSSCSSEEEHHHHHHHHHH
T ss_pred             hHHHHHHHHhcCCCCeEcHHHHHHHHHHHhhhhcccccCchhhccHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHH
Confidence            8999999999999999999999998864321           1122357889999999999999999999999976

>d5pala_ a.39.1.4 (A:) Parvalbumin {Leopard shark (Triakis semifasciata) [TaxId: 30493]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Leopard shark (Triakis semifasciata) [TaxId: 30493]

Probab=99.55  E-value=2.6e-14  Score=108.73  Aligned_cols=97  Identities=15%  Similarity=0.291  Sum_probs=79.8

Q ss_pred             HHHHHHHHH--hCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhc--cCCCChHHHHH
Q psy2947         300 IAELKKYLA--EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHS--KAEDIPKEVVD  375 (441)
Q Consensus       300 ~~~~~~~~~--~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~--~~~~~~~~~~~  375 (441)
                      ..++.+++.  +.+|.|+|+||+.++..   ...+++.++.+|+.||.|++|+|+.+|++.++..+.  +....++++++
T Consensus         8 ~~di~~~~~~~~~~G~idf~eF~~~~~~---~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~l~~~g~~~~~~e~~~   84 (109)
T d5pala_           8 ADDINKAISAFKDPGTFDYKRFFHLVGL---KGKTDAQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKA   84 (109)
T ss_dssp             HHHHHHHHHHTCSTTCCCHHHHHHHHTC---TTCCHHHHHHHHHHHCTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcCcHHHHHHHHHh---cCCCHHHHHHHHhhhcCCCCCeEcHHHHHHHHHHhhhccCcCCHHHHHH
Confidence            344444443  46799999999988752   345678999999999999999999999999988653  33456788999


Q ss_pred             HHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         376 AFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       376 ~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      +|+.+|.|+||.|+++||.++|.+
T Consensus        85 ~~~~~D~d~dG~I~~~EF~~~m~~  108 (109)
T d5pala_          85 LLAAGDSDHDGKIGADEFAKMVAQ  108 (109)
T ss_dssp             HHHHHCTTCSSSEEHHHHHHHHHH
T ss_pred             HHHHhCCCCCCCEeHHHHHHHHHh
Confidence            999999999999999999999864

>d1uhka1 a.39.1.5 (A:3-189) Calcium-regulated photoprotein {Jellyfish (Aequorea aequorea), aequorin [TaxId: 168712]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-regulated photoprotein
species: Jellyfish (Aequorea aequorea), aequorin [TaxId: 168712]

Probab=99.55  E-value=3.3e-14  Score=120.51  Aligned_cols=144  Identities=18%  Similarity=0.218  Sum_probs=97.5

Q ss_pred             ccchHHHHHhhhccccC--CCccCHHHHHHHHHH-----cCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCHH
Q psy2947         262 KTPYLEFRECFFLFARN--GTIKTLDELSVIMRS-----LGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPK  334 (441)
Q Consensus       262 ~~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~-----~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~  334 (441)
                      +..+++++++|..+|.+  |.| +..|+..++..     ++..++..+.....                           
T Consensus         8 p~~~~~~k~~F~~~D~d~dG~I-s~~Ef~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------   59 (187)
T d1uhka1           8 PRWIGRHKHMFNFLDVNHNGKI-SLDEMVYKASDIVINNLGATPEQAKRHKDA---------------------------   59 (187)
T ss_dssp             HHHHHHHHHHHHHHCTTCCSEE-EHHHHHHHHHHHHHHTSCCCHHHHHHHHHH---------------------------
T ss_pred             HHHHHHHHHHHHHHcCCCCCcC-cHHHHHHHHHHHHHHHhccCccHHHHHHHH---------------------------
Confidence            34466777777777765  666 67777655443     23222222222111                           


Q ss_pred             HHHHHHHhhcCCCCCcccHHHHHHHHHhhc----------cCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCC
Q psy2947         335 EVVDAFKAADTTKSGKLSFPDFLKVMHTHS----------KAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGL  404 (441)
Q Consensus       335 ~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~----------~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l  404 (441)
                       ....+...+...++.+++.+|...+....          ........++.+|+.+|++++|.|+.+||+++++.+|..+
T Consensus        60 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~  138 (187)
T d1uhka1          60 -VEAFFGGAGMKYGVETDWPAYIEGWKKLATDELEKYAKNEPTLIRIWGDALFDIVDKDQNGAITLDEWKAYTKAAGIIQ  138 (187)
T ss_dssp             -HHHHHHHTTCCTTCEEEHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHTSCC
T ss_pred             -HHhhhhcccccccccccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHccCCCcccchHHHHHHHHHhCCCc
Confidence             11112233444455566666655443321          1111134578899999999999999999999999999999


Q ss_pred             CHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         405 SSKEVDQIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       405 ~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      ++++++.+|+.+|.|+||.|+|+||++++.
T Consensus       139 ~~~~~~~lf~~~D~d~dG~Is~~EF~~~~~  168 (187)
T d1uhka1         139 SSEDCEETFRVCDIDESGQLDVDEMTRQHL  168 (187)
T ss_dssp             SHHHHHHHHHHSCCCTTSCEEHHHHHHHHH
T ss_pred             cHHHHHHHHHHhCCCCCCCEeHHHHHHHHH
Confidence            999999999999999999999999998774

>d1omra_ a.39.1.5 (A:) Recoverin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Recoverin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.53  E-value=2.4e-14  Score=122.79  Aligned_cols=138  Identities=14%  Similarity=0.166  Sum_probs=110.4

Q ss_pred             ecccchHHHHHhhhccccCCCccCHHHHHHHHHHcCCCcCHH-HHHHHHH----hCCCcccHHHHHHHHHhhcCCCCCHH
Q psy2947         260 TFKTPYLEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIA-ELKKYLA----EKGGKLSFPDFLKVMHTHSKAEDIPK  334 (441)
Q Consensus       260 l~~~~~~~l~~~f~~~d~~G~i~~~~el~~~~~~~~~~~~~~-~~~~~~~----~~~g~i~~~ef~~~~~~~~~~~~~~~  334 (441)
                      ++..++..+.+.|...+++|.| +.+|++.++..++...... ....++.    +++|.|+++||+.++..... ....+
T Consensus        22 f~~~ei~~l~~~F~~~~~~G~i-s~~EF~~~l~~~~~~~~~~~~~~~if~~~D~~~~G~I~f~EF~~~~~~~~~-~~~~~   99 (201)
T d1omra_          22 FTEEELSSWYQSFLKECPSGRI-TRQEFQTIYSKFFPEADPKAYAQHVFRSFDANSDGTLDFKEYVIALHMTSA-GKTNQ   99 (201)
T ss_dssp             SCHHHHHHHHHHHHHHCTTSEE-EHHHHHHHHHHHCTTSCCHHHHHHHHHTTTSCSSSEEEHHHHHHHHHHHHS-SCGGG
T ss_pred             CCHHHHHHHHHHHHHHCcCCCc-cHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCCCCeEeehhHHHHHHhhcc-cchHH
Confidence            5677888888888777789999 8999999999887654433 3345554    68999999999999886643 35567


Q ss_pred             HHHHHHHhhcCCCCCcccHHHHHHHHHhhccCC-------------CChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         335 EVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAE-------------DIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       335 ~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~-------------~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      .++.+|+.||.|++|.|+.+||..++.......             ...+.++.+|+.+|.|+||.|+++||.+++..
T Consensus       100 ~l~~~F~~~D~d~~G~is~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~D~d~dG~Is~~EF~~~~~~  177 (201)
T d1omra_         100 KLEWAFSLYDVDGNGTISKNEVLEIVTAIFKMISPEDTKHLPEDENTPEKRAEKIWGFFGKKDDDKLTEKEFIEGTLA  177 (201)
T ss_dssp             SHHHHHHHHCTTCSSSBCHHHHHHHHHHHHTTSCHHHHTTSCGGGSSHHHHHHHHHHHTTCCTTCCBCHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCCccCHHHHHHHHHHHHhhcChhhhhhhhhhhccHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence            899999999999999999999999887542211             11345678999999999999999999998864

>d1bjfa_ a.39.1.5 (A:) Neurocalcin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Neurocalcin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.53  E-value=2.6e-14  Score=120.52  Aligned_cols=139  Identities=16%  Similarity=0.228  Sum_probs=112.6

Q ss_pred             eecccchHHHHHhhhccccCCCccCHHHHHHHHHHcCCCcCH-HHHHHHH----HhCCCcccHHHHHHHHHhhcCCCCCH
Q psy2947         259 FTFKTPYLEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTI-AELKKYL----AEKGGKLSFPDFLKVMHTHSKAEDIP  333 (441)
Q Consensus       259 ~l~~~~~~~l~~~f~~~d~~G~i~~~~el~~~~~~~~~~~~~-~~~~~~~----~~~~g~i~~~ef~~~~~~~~~~~~~~  333 (441)
                      .++..++..+.+.|...+.+|.+ +..++..++..+...... ....+++    .+++|.|+++||+..+..... ....
T Consensus        17 ~fs~~ei~~l~~~F~~~~~~g~i-~~~ef~~~l~~~~~~~~~~~~~~~lf~~~d~~~~g~i~~~eFl~~~~~~~~-~~~~   94 (181)
T d1bjfa_          17 DFTEHEIQEWYKGFLRDCPSGHL-SMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFIIALSVTSR-GKLE   94 (181)
T ss_dssp             SCCHHHHHHHHHHHHHHSTTSEE-EHHHHHHHHTTTSSSSCCHHHHHHHHHHHCSSCSSEEEHHHHHHHHHHHTS-SCHH
T ss_pred             CCCHHHHHHHHHHHHhhCCCCCc-CHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCCCcEeHHHHHHHHHHHhh-hchH
Confidence            45677888888888777888999 899999999887655443 3334444    368899999999999987754 3557


Q ss_pred             HHHHHHHHhhcCCCCCcccHHHHHHHHHhhcc-----------CCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTHSK-----------AEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       334 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~-----------~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      +.++.+|+.||.|++|.|+.+||..++.....           ....++.++.+|+.+|.|+||.||++||++++..
T Consensus        95 ~~~~~~f~~~D~d~dg~i~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~D~d~dG~Is~~EF~~~~~~  171 (181)
T d1bjfa_          95 QKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEEFIRGAKS  171 (181)
T ss_dssp             HHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHTTCCCTTTSCGGGSSHHHHHHHHHHHSCTTCSSEECHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCCCeecHHHHHHHHHHHhhhccccccCCcccccHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHh
Confidence            88999999999999999999999998876422           1223457889999999999999999999999976

>d1jc2a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.53  E-value=2e-14  Score=101.56  Aligned_cols=68  Identities=15%  Similarity=0.432  Sum_probs=64.2

Q ss_pred             CChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         368 DIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       368 ~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      ..+++++.+|+.||++++|+|+.+||+.+|+.+|.++++++++.+++.+|.|++|+|+|+||+++|..
T Consensus         6 ~~eeel~~~F~~fD~~~~G~I~~~el~~~l~~lg~~~~~~e~~~~~~~~D~d~dg~I~~~EF~~~m~~   73 (75)
T d1jc2a_           6 KSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVIEEDIEDLMKDSDKNNDGRIDFDEFLKMMEG   73 (75)
T ss_dssp             CCHHHHHHHHHHHCCSTTSSEEHHHHHHHHHHSSSCCCHHHHHHHHHHHCSSSCSEECHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHcCCCcCeEcHHHHHHHHHhcCCCccHHHHHHHHHHhCCCCCCcEeHHHHHHHHHh
Confidence            34678999999999999999999999999999999999999999999999999999999999999854

>d1rroa_ a.39.1.4 (A:) Oncomodulin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Oncomodulin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=2.7e-14  Score=108.55  Aligned_cols=98  Identities=16%  Similarity=0.296  Sum_probs=77.7

Q ss_pred             CHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh---CCCCCHHH
Q psy2947         332 IPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW---GEGLSSKE  408 (441)
Q Consensus       332 ~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~---~~~l~~~~  408 (441)
                      +.+++..+.+..+  .+|.+++.+|...+...   ....+.++.+|+.+|.|++|+|+.+||+++++.+   +..+++++
T Consensus         7 s~~dI~~~l~~~~--~~~s~~~~~F~~~~~~~---~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~l~~~~~~l~~~~   81 (108)
T d1rroa_           7 SAEDIAAALQECQ--DPDTFEPQKFFQTSGLS---KMSASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESE   81 (108)
T ss_dssp             CHHHHHHHHHHTC--STTCCCHHHHHHHHSGG---GSCHHHHHHHHHHHCTTCSSEECTHHHHTGGGGTCTTSCCCCHHH
T ss_pred             CHHHHHHHHHhcc--cCCCccHHHHHHHHccC---cCCHHHHHHHHhhhcCCCCCeEcHHHHHHHHHHHHhccCCCCHHH
Confidence            3445555544444  44668888887655432   2346789999999999999999999999999876   45689999


Q ss_pred             HHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         409 VDQIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       409 ~~~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      ++.+++.+|.|+||.|+|+||+.+|.
T Consensus        82 ~~~~~~~~D~d~dG~I~~~EF~~~m~  107 (108)
T d1rroa_          82 TKSLMDAADNDGDGKIGADEFQEMVH  107 (108)
T ss_dssp             HHHHHHHHCCSSSSSEEHHHHHHHHT
T ss_pred             HHHHHHHhCCCCCCeEeHHHHHHHHc
Confidence            99999999999999999999999885

>d1s6ca_ a.39.1.5 (A:) Kchip1, Kv4 potassium channel-interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Kchip1, Kv4 potassium channel-interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=3.8e-14  Score=119.06  Aligned_cols=139  Identities=13%  Similarity=0.160  Sum_probs=108.6

Q ss_pred             eecccchHHHHHhhhccccCCCccCHHHHHHHHHHcCCCcCHHH-HHHHH----HhCCCcccHHHHHHHHHhhcCCCCCH
Q psy2947         259 FTFKTPYLEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAE-LKKYL----AEKGGKLSFPDFLKVMHTHSKAEDIP  333 (441)
Q Consensus       259 ~l~~~~~~~l~~~f~~~d~~G~i~~~~el~~~~~~~~~~~~~~~-~~~~~----~~~~g~i~~~ef~~~~~~~~~~~~~~  333 (441)
                      .++..++..+.+.|...+.+|.+ +.++++.++..+........ ..+++    .+++|.|+++||..++..... ....
T Consensus         9 ~ft~~ei~~l~~~F~~~~~~G~i-s~~ef~~~l~~~~~~~~~~~~~~~lf~~~D~~~~g~I~~~EFl~~~~~~~~-~~~~   86 (178)
T d1s6ca_           9 NFTKRELQVLYRGFKNECPSGVV-NEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLR-GTVH   86 (178)
T ss_dssp             SCCHHHHHHHHHHHHHHCTTSEE-CHHHHHHHHHHHSTTSCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHH-CCHH
T ss_pred             CCCHHHHHHHHHHHHHHCcCCCc-cHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHHhc-cchH
Confidence            45677888888888777888999 89999999988776543333 24444    478999999999998875543 3557


Q ss_pred             HHHHHHHHhhcCCCCCcccHHHHHHHHHhhcc-----------CCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTHSK-----------AEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       334 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~-----------~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      +.++.+|+.||.|++|.|+++|+..++.....           ....++.++.+|+.+|.|+||.||++||.+++..
T Consensus        87 ~~~~~~f~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~D~d~DG~Is~~EF~~~i~~  163 (178)
T d1s6ca_          87 EKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESCQE  163 (178)
T ss_dssp             HHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHHTC-----------CHHHHHHHHHHHCTTCSSEECHHHHHHHTTS
T ss_pred             HHHHHHHHhhccCCCCeecHHHHHHHHHHHHhhcccccccCCcHHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHH
Confidence            88999999999999999999999987654321           1112455778999999999999999999998864

>d1fw4a_ a.39.1.5 (A:) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.52  E-value=1.8e-14  Score=98.82  Aligned_cols=64  Identities=38%  Similarity=0.695  Sum_probs=61.4

Q ss_pred             hHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy2947         370 PKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA  433 (441)
Q Consensus       370 ~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l  433 (441)
                      +++++.+|+.||++++|+|+.+||+.+++.+|.++++++++.+++.+|.|++|.|+|+||+++|
T Consensus         2 eeel~~aF~~fD~d~~G~I~~~el~~~l~~lg~~~~~~e~~~l~~~~D~d~~g~I~~~eF~~~m   65 (65)
T d1fw4a_           2 EEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM   65 (65)
T ss_dssp             CHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHTTCTTCSSSEEHHHHHHHC
T ss_pred             HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCCCCcEeHHHHHHHC
Confidence            5789999999999999999999999999999999999999999999999999999999999875

>d1oqpa_ a.39.1.5 (A:) Caltractin (centrin 2) {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Caltractin (centrin 2)
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.51  E-value=2.6e-14  Score=101.77  Aligned_cols=70  Identities=27%  Similarity=0.495  Sum_probs=65.5

Q ss_pred             CCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhcc
Q psy2947         367 EDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAP  436 (441)
Q Consensus       367 ~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~~  436 (441)
                      ....++++.+|+.+|++++|+|+.+||+++|+.+|.+++++++..+++.+|.|++|.|+|+||+++|.+.
T Consensus         5 ~d~~e~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~e~~~~~~~~D~d~~G~I~~~EF~~~m~k~   74 (77)
T d1oqpa_           5 RDSREEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDEDEFIRIMKKT   74 (77)
T ss_dssp             SSHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHHTCCCCHHHHHHHHHHHCCSSSSEECHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHcCCCCCEechHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHcc
Confidence            3446789999999999999999999999999999999999999999999999999999999999999764

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=3.6e-14  Score=116.92  Aligned_cols=103  Identities=23%  Similarity=0.162  Sum_probs=86.0

Q ss_pred             CCCcccEEeccCCCc---CcccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhh-hcCCCCCEE
Q psy2947          59 YFSHAFLLSLSYTPI---GRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTL-TFCKNLTHL  134 (441)
Q Consensus        59 ~l~~L~~l~l~~n~i---~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~-~~l~~L~~L  134 (441)
                      +...++.|+|++|.|   +.....+++|+.|+|++|+|+.++ .|..+++|++|++++|+++  .+|..+ ..+++|++|
T Consensus        16 n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~--~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRIC--RIGEGLDQALPDLTEL   92 (162)
T ss_dssp             CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCC--EECSCHHHHCTTCCEE
T ss_pred             CcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhccccccc--CCCccccccccccccc
Confidence            356789999999954   444466889999999999999884 5888999999999999998  677654 678999999


Q ss_pred             EccCCCCCccc--hhhcCCCCCCEEEccCCcC
Q psy2947         135 YLDNNLLDALP--GFLLSMPQLDTVYRHGNHN  164 (441)
Q Consensus       135 ~l~~n~l~~lp--~~~~~l~~L~~L~l~~N~~  164 (441)
                      ++++|+|+.++  ..+..+++|++|++++|++
T Consensus        93 ~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i  124 (162)
T d1a9na_          93 ILTNNSLVELGDLDPLASLKSLTYLCILRNPV  124 (162)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred             eeccccccccccccccccccccchhhcCCCcc
Confidence            99999998887  4678889999999999985

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=5.4e-14  Score=110.29  Aligned_cols=104  Identities=22%  Similarity=0.260  Sum_probs=88.1

Q ss_pred             CEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEccCCCCCccchhhcCCCCCCEEEccCCc
Q psy2947          84 EVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMPQLDTVYRHGNH  163 (441)
Q Consensus        84 ~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~N~  163 (441)
                      ++|+|++|.++.++ .+..+++|++|++++|+|+  .+|..++.+++|+.|++++|.|+.+|. +..+++|+.|++++|+
T Consensus         1 R~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l~--~lp~~~~~l~~L~~L~l~~N~i~~l~~-~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALENVDG-VANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCCCCc-ccccCCCCCEEECCCCccC--cchhhhhhhhcccccccccccccccCc-cccccccCeEECCCCc
Confidence            58999999999887 5899999999999999998  899899999999999999999999975 8899999999999999


Q ss_pred             CccCcccccccccccccccccchhHHHHhhcccccCCchhhhhhhhcccccccccCCC
Q psy2947         164 NYFKSTFMWYHSDIHARIRSTSTRDEVLRKQKKLHQPSRLQDLAVQSVIASKENFFEP  221 (441)
Q Consensus       164 ~~~~~~~~~~~~~~p~~l~~l~~~~~~l~~~~~~~~p~~l~~l~~l~~l~l~~n~~~~  221 (441)
                      +.....                              ...+..++.|+.+++++|++..
T Consensus        77 i~~~~~------------------------------~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          77 LQQSAA------------------------------IQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CCSSST------------------------------TGGGGGCTTCCEEECTTSGGGG
T ss_pred             cCCCCC------------------------------chhhcCCCCCCEEECCCCcCCc
Confidence            633221                              1245666778888888887653

>d1tiza_ a.39.1.5 (A:) Calmodulin-related protein T21P5.17 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin-related protein T21P5.17
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.49  E-value=5.1e-14  Score=97.17  Aligned_cols=64  Identities=16%  Similarity=0.310  Sum_probs=61.0

Q ss_pred             HHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhcc
Q psy2947         373 VVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAP  436 (441)
Q Consensus       373 ~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~~  436 (441)
                      ++.+|+.+|.|++|+|+.+||+.+++.+|..+++++++.+|+.+|.|++|.|+|+||+.+|.+.
T Consensus         3 ~r~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~~i~~~~~~~D~d~dg~I~~~EF~~~m~~~   66 (67)
T d1tiza_           3 AKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTSCIEKM   66 (67)
T ss_dssp             HHHHHHHHCTTSSSCEEHHHHHHHHHHTCTTSCHHHHHHHHHHHCCSSSSEECHHHHHHHHHTC
T ss_pred             HHHHHHHHCCCCcCcCcHHHHHHHHHHhccccchHHHHHHHHHhCCCCCCeEeHHHHHHHHHHh
Confidence            5789999999999999999999999999999999999999999999999999999999999764

>d1fi5a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]

Probab=99.48  E-value=5.6e-14  Score=100.87  Aligned_cols=67  Identities=18%  Similarity=0.461  Sum_probs=63.5

Q ss_pred             ChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         369 IPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       369 ~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      .+++++.+|+.||.+++|+|+.+||+.+++.+|.++++++++.+++.+|.|++|.|+|+||+++|..
T Consensus        13 ~ee~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~ev~~~~~~~D~d~dg~I~~~EF~~~m~~   79 (81)
T d1fi5a_          13 TEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMKG   79 (81)
T ss_dssp             CHHHHHHHHHHHCSSCSSEECHHHHHHHHHTSSSCCCHHHHHHHHHHHCSSSSSSEEHHHHHHHHSC
T ss_pred             CHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence            4678999999999999999999999999999999999999999999999999999999999998864

>d1c7va_ a.39.1.5 (A:) Calcium vector protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium vector protein
species: Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]

Probab=99.48  E-value=1.4e-14  Score=100.10  Aligned_cols=66  Identities=24%  Similarity=0.426  Sum_probs=61.8

Q ss_pred             HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhcc
Q psy2947         371 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGE-GLSSKEVDQIFREANVTMNSKVRYEDFVKIACAP  436 (441)
Q Consensus       371 ~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~-~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~~  436 (441)
                      ++++.+|+.||.+++|+|+.+||+++|+.+|. ++++++++.+++.+|.|++|.|+|+||+++|.++
T Consensus         2 eel~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~s~~e~~~~~~~~D~d~dG~i~~~EF~~~m~r~   68 (68)
T d1c7va_           2 EEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDIPEFMDLIKKS   68 (68)
T ss_dssp             HHHHHHHHHHSCSGGGEECHHHHHHHSSTTTTCCCCHHHHHHHHHHHCSSGGGSEEHHHHHHHHHCC
T ss_pred             HHHHHHHHHHcCCCcCeEcHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHhC
Confidence            57889999999999999999999999999987 5899999999999999999999999999999864

>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.48  E-value=7.1e-14  Score=99.49  Aligned_cols=68  Identities=22%  Similarity=0.419  Sum_probs=64.3

Q ss_pred             HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhccCC
Q psy2947         371 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAPVP  438 (441)
Q Consensus       371 ~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~~~~  438 (441)
                      ++++.+|+.+|.+++|+|+.+||+.+|+.+|..++++++..++..+|.+++|.|+|+||+.+|.+.+.
T Consensus        10 ~el~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~t~~e~~~~~~~~D~~~~g~I~~~eF~~~m~~~~k   77 (77)
T d1f54a_          10 AEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQIEFSEFLALMSRQLK   77 (77)
T ss_dssp             HHHHHHHHHTCTTCSSEEEHHHHHHHHHHHTCCCCHHHHHHHHHTTCCSSCCEEEHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHcCCCCCeEChHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHhcC
Confidence            46788999999999999999999999999999999999999999999999999999999999988763

>d1avsa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.48  E-value=5.2e-14  Score=101.06  Aligned_cols=67  Identities=22%  Similarity=0.390  Sum_probs=63.3

Q ss_pred             HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhccC
Q psy2947         371 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAPV  437 (441)
Q Consensus       371 ~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~~~  437 (441)
                      ++++.+|..||.+++|.|+.+||+.+++.+|.++++.+++.++..+|.|++|.|+|+||+.+|.+++
T Consensus        14 ~el~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~s~~e~~~~~~~~D~d~~g~I~~~eF~~~m~~k~   80 (81)
T d1avsa_          14 AEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQM   80 (81)
T ss_dssp             HHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTCCSSEEHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCeEchhHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHhc
Confidence            4577899999999999999999999999999999999999999999999999999999999998764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.48  E-value=8e-14  Score=119.32  Aligned_cols=145  Identities=18%  Similarity=0.199  Sum_probs=115.6

Q ss_pred             CCcccEEeccCCCcC--cccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEcc
Q psy2947          60 FSHAFLLSLSYTPIG--RRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLD  137 (441)
Q Consensus        60 l~~L~~l~l~~n~i~--~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~  137 (441)
                      +.+|+.|++++|.|.  ..+..+++|++|++++|+++.+++ ++.+++|++|++++|.+.  .+| .+.++++|+.|+++
T Consensus        39 l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~--~~~-~l~~l~~L~~L~l~  114 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIA--DIT-PLANLTNLTGLTLF  114 (199)
T ss_dssp             HTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC--CCG-GGTTCTTCSEEECC
T ss_pred             hcCCCEEECCCCCCCCccccccCCCcCcCccccccccCccc-ccCCcccccccccccccc--ccc-cccccccccccccc
Confidence            678899999998664  346788999999999999998765 889999999999999987  666 48889999999999


Q ss_pred             CCCCCccchhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCchhhhhhhhccccccc
Q psy2947         138 NNLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSRLQDLAVQSVIASKE  216 (441)
Q Consensus       138 ~n~l~~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~l~~l~~l~~l~l~~  216 (441)
                      +|.+..++ .+..+++|+.|++++|++....           .+..++.+..+ +.+|.+..++ .+..+++|+.|++++
T Consensus       115 ~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~-----------~l~~~~~L~~L~l~~n~l~~l~-~l~~l~~L~~L~ls~  181 (199)
T d2omxa2         115 NNQITDID-PLKNLTNLNRLELSSNTISDIS-----------ALSGLTSLQQLNFSSNQVTDLK-PLANLTTLERLDISS  181 (199)
T ss_dssp             SSCCCCCG-GGTTCTTCSEEECCSSCCCCCG-----------GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCS
T ss_pred             cccccccc-ccchhhhhHHhhhhhhhhcccc-----------cccccccccccccccccccCCc-cccCCCCCCEEECCC
Confidence            99887765 3677899999999999864322           24444455555 6677777776 588999999999999


Q ss_pred             ccCCC
Q psy2947         217 NFFEP  221 (441)
Q Consensus       217 n~~~~  221 (441)
                      |.+..
T Consensus       182 N~i~~  186 (199)
T d2omxa2         182 NKVSD  186 (199)
T ss_dssp             SCCCC
T ss_pred             CCCCC
Confidence            97653

>d2pvba_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Pike (Esox lucius) [TaxId: 8010]

Probab=99.47  E-value=2.2e-13  Score=103.20  Aligned_cols=97  Identities=15%  Similarity=0.178  Sum_probs=80.8

Q ss_pred             CHHHHHHHHH--hCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhcc--CCCChHHHH
Q psy2947         299 TIAELKKYLA--EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSK--AEDIPKEVV  374 (441)
Q Consensus       299 ~~~~~~~~~~--~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~--~~~~~~~~~  374 (441)
                      +..++..++.  +.+|.|+|.||.+.+...   ....++++.+|+.||.|++|+|+.+||..++..+..  ...+++.++
T Consensus         6 s~~di~~~~~~~~~~gsi~~~eF~~~~~l~---~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~~~~~~~~~   82 (107)
T d2pvba_           6 KDADVAAALAACSAADSFKHKEFFAKVGLA---SKSLDDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETK   82 (107)
T ss_dssp             CHHHHHHHHHHTCSTTCCCHHHHHHHHTGG---GSCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTSCCCCHHHHH
T ss_pred             CHHHHHHHHHhccCCCCcCHHHHHHHHhcc---cCCHHHHHHHHHhhccCCCCcCcHHHHHHHHHHhhcccccCCHHHHH
Confidence            3455555554  467899999999988643   346789999999999999999999999999887642  345678999


Q ss_pred             HHHHHhCCCCCCcccHHHHHHHHH
Q psy2947         375 DAFKAADTTKSGTVPAKYLKHVLV  398 (441)
Q Consensus       375 ~~f~~~D~~~~G~is~~ef~~~l~  398 (441)
                      .+|+.+|.|+||.|+++||.++|+
T Consensus        83 ~l~~~~D~d~dG~I~~~EF~~~m~  106 (107)
T d2pvba_          83 AFLADGDKDGDGMIGVDEFAAMIK  106 (107)
T ss_dssp             HHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred             HHHHHhCCCCCCcEeHHHHHHHHc
Confidence            999999999999999999999986

>d1wrka1 a.39.1.5 (A:4-85) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Human (Homo sapiens), cardiac isoform [TaxId: 9606]

Probab=99.46  E-value=1e-13  Score=99.47  Aligned_cols=67  Identities=18%  Similarity=0.340  Sum_probs=63.4

Q ss_pred             HHHHHHHHHhCCCC-CCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhccC
Q psy2947         371 KEVVDAFKAADTTK-SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAPV  437 (441)
Q Consensus       371 ~~~~~~f~~~D~~~-~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~~~  437 (441)
                      ++++.+|+.||+++ +|.|+..|++.+|+.+|..+++++++.+++.+|.|++|.|+|+||+.+|.+++
T Consensus        15 ~~~~~~F~~fD~d~~~G~I~~~el~~~l~~lg~~~t~~el~~~i~~~D~d~~G~I~f~eFl~im~~km   82 (82)
T d1wrka1          15 NEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRSM   82 (82)
T ss_dssp             HHHHHHHHHHTTTCTTSSBCHHHHHHHHHHTTCCCCHHHHHHHHHTTCTTCCSSBCHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHcCcCCCCeEeHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHHhhC
Confidence            57788999999996 79999999999999999999999999999999999999999999999998864

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.46  E-value=1.5e-14  Score=133.16  Aligned_cols=156  Identities=18%  Similarity=0.231  Sum_probs=111.9

Q ss_pred             CCCcccEEeccC-C----CcCcccCCCCCCCEEEccCCCCCcCC-cCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCC
Q psy2947          59 YFSHAFLLSLSY-T----PIGRRIFKCDTVEVLSLKSNSLTSLP-PDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLT  132 (441)
Q Consensus        59 ~l~~L~~l~l~~-n----~i~~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~  132 (441)
                      .+++|++|+|++ |    .||..++++++|++|+|++|++..++ ..+..+.+|+.+++++|.+. +.+|..+..++.|+
T Consensus        74 ~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~-~~~p~~l~~l~~L~  152 (313)
T d1ogqa_          74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS-GTLPPSISSLPNLV  152 (313)
T ss_dssp             GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEE-SCCCGGGGGCTTCC
T ss_pred             cCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccccccccccc-ccCchhhccCcccc
Confidence            488999999986 5    68899999999999999999988543 33666677777777776665 56666666666666


Q ss_pred             EEEccCCCCC-ccc------------------------------------------------hhhcCCCCCCEEEccCCc
Q psy2947         133 HLYLDNNLLD-ALP------------------------------------------------GFLLSMPQLDTVYRHGNH  163 (441)
Q Consensus       133 ~L~l~~n~l~-~lp------------------------------------------------~~~~~l~~L~~L~l~~N~  163 (441)
                      ++++++|.+. .+|                                                ..++.+++|+.+++++|.
T Consensus       153 ~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~  232 (313)
T d1ogqa_         153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS  232 (313)
T ss_dssp             EEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred             eeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            6666665542 222                                                222345677888888887


Q ss_pred             CccCcccccccccccccccccchhHHH-Hhhcccc-cCCchhhhhhhhcccccccccCCCCCCCc
Q psy2947         164 NYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKL-HQPSRLQDLAVQSVIASKENFFEPGLFPG  226 (441)
Q Consensus       164 ~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~-~~p~~l~~l~~l~~l~l~~n~~~~~~~p~  226 (441)
                      +         .+.+ ..+..++.+..+ +++|.+. .+|+.+..+++|+.|++++|.+. +.+|.
T Consensus       233 l---------~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~-g~iP~  286 (313)
T d1ogqa_         233 L---------AFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC-GEIPQ  286 (313)
T ss_dssp             E---------CCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE-EECCC
T ss_pred             c---------cccc-cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCccc-ccCCC
Confidence            4         2222 345555666666 7888885 79999999999999999999876 45775

>d2fcea1 a.39.1.5 (A:84-144) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.46  E-value=7.7e-14  Score=94.19  Aligned_cols=61  Identities=30%  Similarity=0.581  Sum_probs=58.4

Q ss_pred             HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHH
Q psy2947         371 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVK  431 (441)
Q Consensus       371 ~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~  431 (441)
                      ++++.+|+.+|++++|+|+.+||+.+|+.+|.++++++++.+++.+|.|++|.|+|+||++
T Consensus         1 Eel~~aF~~fD~~~~G~I~~~el~~~l~~~g~~~~~~ei~~l~~~~D~d~dg~I~~~eFl~   61 (61)
T d2fcea1           1 EDFVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDYKKFIE   61 (61)
T ss_dssp             HHHHHHHHHHCTTCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHTTCCCCTTSEECHHHHHH
T ss_pred             ChHHHHHHHHCCCCCCeEeHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCCCCcEeHHHhcC
Confidence            4678899999999999999999999999999999999999999999999999999999984

>d1rwya_ a.39.1.4 (A:) Parvalbumin {Rat (Rattus rattus) [TaxId: 10117]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.45  E-value=3.1e-13  Score=102.92  Aligned_cols=88  Identities=15%  Similarity=0.257  Sum_probs=75.9

Q ss_pred             hCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhcc--CCCChHHHHHHHHHhCCCCCC
Q psy2947         309 EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSK--AEDIPKEVVDAFKAADTTKSG  386 (441)
Q Consensus       309 ~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~--~~~~~~~~~~~f~~~D~~~~G  386 (441)
                      +.+|.|+++||..++...   ....+.++.+|+.||.|++|+|+.+||+.++..+..  ....+++++.+|+.+|.|+||
T Consensus        19 ~~~~~i~f~eF~~~~~~~---~~~~~~~~~~F~~~D~d~~G~I~~~El~~~l~~l~~~~~~~~~~e~~~~~~~~D~d~dG   95 (109)
T d1rwya_          19 TAADSFDHKKFFQMVGLK---KKSADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDG   95 (109)
T ss_dssp             CSTTCCCHHHHHHHHTGG---GSCHHHHHHHHHHHSTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHHHHHHHHCTTCSS
T ss_pred             ccCCCcCHHHHHHHHccc---cCCHHHHHHHhhcccCCCCCcCcHHHHHHHHHHhccccccCCHHHHHHHHHHhCCCCCC
Confidence            357899999999988643   345788999999999999999999999999987643  345578899999999999999


Q ss_pred             cccHHHHHHHHHH
Q psy2947         387 TVPAKYLKHVLVN  399 (441)
Q Consensus       387 ~is~~ef~~~l~~  399 (441)
                      .|+++||.++|.+
T Consensus        96 ~i~~~EF~~~m~~  108 (109)
T d1rwya_          96 KIGVEEFSTLVAE  108 (109)
T ss_dssp             SEEHHHHHHHHHT
T ss_pred             eEeHHHHHHHHHh
Confidence            9999999999863

>d1s6ja_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD {Soybean (Glycine max) [TaxId: 3847]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-dependent protein kinase sk5 CLD
species: Soybean (Glycine max) [TaxId: 3847]

Probab=99.45  E-value=1.7e-14  Score=105.05  Aligned_cols=86  Identities=24%  Similarity=0.345  Sum_probs=70.6

Q ss_pred             CCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcee
Q psy2947         346 TKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVR  425 (441)
Q Consensus       346 d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~  425 (441)
                      +++|.|+..+..  +....... ....++.+|+.+|++++|.|+.+||+.+|+.+|..+++++++.+++.+|.|++|.|+
T Consensus         1 ~~~g~id~~~~~--ma~~l~~~-~i~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~s~~e~~~l~~~~D~d~~g~I~   77 (87)
T d1s6ja_           1 HSSGHIDDDDKH--MAERLSEE-EIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTID   77 (87)
T ss_dssp             CCSSSSSSHHHH--SSSSSCSS-STTTTTTHHHHHCTTCSSCEEHHHHHHHHHTTTSSCCHHHHHHHHHHHCTTCSSEEC
T ss_pred             CCCCccCchHHH--HHhhCCHH-HHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCCCCeEe
Confidence            357888877733  22221111 123578899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q psy2947         426 YEDFVKIAC  434 (441)
Q Consensus       426 ~~ef~~~l~  434 (441)
                      |+||+.+|.
T Consensus        78 ~~EFl~am~   86 (87)
T d1s6ja_          78 YGEFIAATV   86 (87)
T ss_dssp             HHHHTTCCC
T ss_pred             HHHHHHHHc
Confidence            999998764

>d2pq3a1 a.39.1.5 (A:3-75) Calmodulin {Rattus norvegicus [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Rattus norvegicus [TaxId: 10116]

Probab=99.44  E-value=9.2e-14  Score=97.67  Aligned_cols=66  Identities=21%  Similarity=0.408  Sum_probs=62.4

Q ss_pred             HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhcc
Q psy2947         371 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAP  436 (441)
Q Consensus       371 ~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~~  436 (441)
                      .+++.+|+.+|.+++|.|+.+||+.+++.+|..++++++..+++.+|.|++|.|+|+||+.+|.++
T Consensus         8 ~el~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~s~~~~~~~~~~~D~d~~g~I~f~eF~~~m~~k   73 (73)
T d2pq3a1           8 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARK   73 (73)
T ss_dssp             HHHHHHHHHTCTTSSSEEEGGGHHHHHHHTTCCCCHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCceEeHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHhcC
Confidence            467889999999999999999999999999999999999999999999999999999999998753

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.43  E-value=2.2e-13  Score=117.49  Aligned_cols=144  Identities=22%  Similarity=0.240  Sum_probs=93.0

Q ss_pred             CCcccEEeccCCCcC--cccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEcc
Q psy2947          60 FSHAFLLSLSYTPIG--RRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLD  137 (441)
Q Consensus        60 l~~L~~l~l~~n~i~--~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~  137 (441)
                      +.+|+.|++++|.|.  ..+..+++|++|+|++|+|+.++ .++.+++|+.|++++|+++  .+| .+..+++|+.|+++
T Consensus        45 L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n~i~--~l~-~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVK--DLS-SLKDLKKLKSLSLE  120 (210)
T ss_dssp             HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCC--CGG-GGTTCTTCCEEECT
T ss_pred             hcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCcc-ccccCcccccccccccccc--ccc-cccccccccccccc
Confidence            456777777777442  23556777777777777777665 3567777777777777776  565 46677777777777


Q ss_pred             CCCCCccchhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCchhhhhhhhccccccc
Q psy2947         138 NNLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSRLQDLAVQSVIASKE  216 (441)
Q Consensus       138 ~n~l~~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~l~~l~~l~~l~l~~  216 (441)
                      +|.+..++ .+..++.|+.+++++|.+....           .+..++.+..+ +.+|.+..++ .+..+++|+.|++++
T Consensus       121 ~~~~~~~~-~l~~l~~l~~l~~~~n~l~~~~-----------~~~~l~~L~~l~l~~n~l~~i~-~l~~l~~L~~L~Ls~  187 (210)
T d1h6ta2         121 HNGISDIN-GLVHLPQLESLYLGNNKITDIT-----------VLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSK  187 (210)
T ss_dssp             TSCCCCCG-GGGGCTTCCEEECCSSCCCCCG-----------GGGGCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCS
T ss_pred             cccccccc-cccccccccccccccccccccc-----------cccccccccccccccccccccc-cccCCCCCCEEECCC
Confidence            77776654 3556677777777777753211           22333344444 5566666655 367777777777777


Q ss_pred             ccCC
Q psy2947         217 NFFE  220 (441)
Q Consensus       217 n~~~  220 (441)
                      |.+.
T Consensus       188 N~i~  191 (210)
T d1h6ta2         188 NHIS  191 (210)
T ss_dssp             SCCC
T ss_pred             CCCC
Confidence            7654

>d1rroa_ a.39.1.4 (A:) Oncomodulin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Oncomodulin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.43  E-value=2.1e-13  Score=103.58  Aligned_cols=98  Identities=16%  Similarity=0.218  Sum_probs=79.7

Q ss_pred             cCHHHHHHHHH--hCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhcc--CCCChHHH
Q psy2947         298 PTIAELKKYLA--EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSK--AEDIPKEV  373 (441)
Q Consensus       298 ~~~~~~~~~~~--~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~--~~~~~~~~  373 (441)
                      .+..++..+++  +.+|.+++++|...+..   .....+.++++|+.||.|++|+|+.+||+.++..+..  ....++++
T Consensus         6 ls~~dI~~~l~~~~~~~s~~~~~F~~~~~~---~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~l~~~~~~l~~~~~   82 (108)
T d1rroa_           6 LSAEDIAAALQECQDPDTFEPQKFFQTSGL---SKMSASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESET   82 (108)
T ss_dssp             SCHHHHHHHHHHTCSTTCCCHHHHHHHHSG---GGSCHHHHHHHHHHHCTTCSSEECTHHHHTGGGGTCTTSCCCCHHHH
T ss_pred             CCHHHHHHHHHhcccCCCccHHHHHHHHcc---CcCCHHHHHHHHhhhcCCCCCeEcHHHHHHHHHHHHhccCCCCHHHH
Confidence            34455555554  36789999999876642   2356788999999999999999999999999987632  34457899


Q ss_pred             HHHHHHhCCCCCCcccHHHHHHHHH
Q psy2947         374 VDAFKAADTTKSGTVPAKYLKHVLV  398 (441)
Q Consensus       374 ~~~f~~~D~~~~G~is~~ef~~~l~  398 (441)
                      +.+|+.+|.|+||.|+++||.++|+
T Consensus        83 ~~~~~~~D~d~dG~I~~~EF~~~m~  107 (108)
T d1rroa_          83 KSLMDAADNDGDGKIGADEFQEMVH  107 (108)
T ss_dssp             HHHHHHHCCSSSSSEEHHHHHHHHT
T ss_pred             HHHHHHhCCCCCCeEeHHHHHHHHc
Confidence            9999999999999999999999885

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.41  E-value=2.7e-13  Score=116.94  Aligned_cols=141  Identities=23%  Similarity=0.275  Sum_probs=111.5

Q ss_pred             CCCCcccEEeccCCCcC--cccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEE
Q psy2947          58 QYFSHAFLLSLSYTPIG--RRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLY  135 (441)
Q Consensus        58 ~~l~~L~~l~l~~n~i~--~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~  135 (441)
                      ..+++|+.|++++|.|.  ..+..+++|++|++++|+++.+| .+..+++|+.|++++|.+.  .++ .+..+++|+.++
T Consensus        65 ~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~~~~~--~~~-~l~~l~~l~~l~  140 (210)
T d1h6ta2          65 QYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEHNGIS--DIN-GLVHLPQLESLY  140 (210)
T ss_dssp             GGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTTSCCC--CCG-GGGGCTTCCEEE
T ss_pred             hhCCCCCEEeCCCccccCccccccCccccccccccccccccc-ccccccccccccccccccc--ccc-cccccccccccc
Confidence            45888999999999553  24677889999999999999887 5888999999999999886  554 578889999999


Q ss_pred             ccCCCCCccchhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCchhhhhhhhccccc
Q psy2947         136 LDNNLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSRLQDLAVQSVIAS  214 (441)
Q Consensus       136 l~~n~l~~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~l~~l~~l~~l~l  214 (441)
                      +++|.++.++ .+..+++|+.+++++|++..          ++ .+..++.+..+ +++|.+..+| .+..+++|+.|++
T Consensus       141 ~~~n~l~~~~-~~~~l~~L~~l~l~~n~l~~----------i~-~l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L  207 (210)
T d1h6ta2         141 LGNNKITDIT-VLSRLTKLDTLSLEDNQISD----------IV-PLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLEL  207 (210)
T ss_dssp             CCSSCCCCCG-GGGGCTTCSEEECCSSCCCC----------CG-GGTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEEE
T ss_pred             cccccccccc-cccccccccccccccccccc----------cc-cccCCCCCCEEECCCCCCCCCh-hhcCCCCCCEEEc
Confidence            9999987765 35678899999999998632          22 25566666666 7888888887 6888888888887


Q ss_pred             c
Q psy2947         215 K  215 (441)
Q Consensus       215 ~  215 (441)
                      +
T Consensus       208 s  208 (210)
T d1h6ta2         208 F  208 (210)
T ss_dssp             E
T ss_pred             c
Confidence            5

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.40  E-value=7.4e-13  Score=113.15  Aligned_cols=138  Identities=18%  Similarity=0.252  Sum_probs=112.2

Q ss_pred             CCCCcccEEeccCCCcC--cccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEE
Q psy2947          58 QYFSHAFLLSLSYTPIG--RRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLY  135 (441)
Q Consensus        58 ~~l~~L~~l~l~~n~i~--~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~  135 (441)
                      ..+++|+.|++++|.+.  ..+..+++|+.|++++|.+..++. +..+++|+.|++++|.+.  .++ .+..+++|+.|+
T Consensus        59 ~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~l~~~~~~--~~~-~~~~l~~L~~L~  134 (199)
T d2omxa2          59 EYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQIT--DID-PLKNLTNLNRLE  134 (199)
T ss_dssp             GGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCC--CCG-GGTTCTTCSEEE
T ss_pred             ccCCCcCcCccccccccCcccccCCcccccccccccccccccc-cccccccccccccccccc--ccc-ccchhhhhHHhh
Confidence            45899999999999654  247889999999999999998874 889999999999999987  443 578899999999


Q ss_pred             ccCCCCCccchhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCchhhhhhhhccc
Q psy2947         136 LDNNLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSRLQDLAVQSVI  212 (441)
Q Consensus       136 l~~n~l~~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~l~~l~~l~~l  212 (441)
                      +++|++..+| .+..+++|+.|++++|.+....           .++.++.+..+ +++|.++.+| .+..+++|+.|
T Consensus       135 l~~n~l~~~~-~l~~~~~L~~L~l~~n~l~~l~-----------~l~~l~~L~~L~ls~N~i~~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         135 LSSNTISDIS-ALSGLTSLQQLNFSSNQVTDLK-----------PLANLTTLERLDISSNKVSDIS-VLAKLTNLESL  199 (199)
T ss_dssp             CCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCG-----------GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEE
T ss_pred             hhhhhhcccc-cccccccccccccccccccCCc-----------cccCCCCCCEEECCCCCCCCCc-cccCCCCCCcC
Confidence            9999998876 4788999999999999864322           25566666666 8888888876 57777776653

>d2scpa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein {Sandworm (Nereis diversicolor) [TaxId: 126592]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Sarcoplasmic calcium-binding protein
species: Sandworm (Nereis diversicolor) [TaxId: 126592]

Probab=99.39  E-value=9.2e-13  Score=109.97  Aligned_cols=134  Identities=16%  Similarity=0.159  Sum_probs=102.5

Q ss_pred             cchHHHHHhhhccccC--CCccCHHHHHHHHHHcC----CCcCHH-HHHH----HH------HhCCCcccHHHHHHHHHh
Q psy2947         263 TPYLEFRECFFLFARN--GTIKTLDELSVIMRSLG----MSPTIA-ELKK----YL------AEKGGKLSFPDFLKVMHT  325 (441)
Q Consensus       263 ~~~~~l~~~f~~~d~~--G~i~~~~el~~~~~~~~----~~~~~~-~~~~----~~------~~~~g~i~~~ef~~~~~~  325 (441)
                      ...++++.+|..+|.+  |.| +..|+..++..+.    ...... .+..    ..      .++++.|+++||...+..
T Consensus         3 ~~~~~l~~~F~~~D~d~dG~I-s~~Ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~   81 (174)
T d2scpa_           3 LWVQKMKTYFNRIDFDKDGAI-TRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVAGGKGIDETTFINSMKE   81 (174)
T ss_dssp             HHHHHHHHHHHHHCTTCSSEE-CHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHHHHHHTGGGTTTTSCEEHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCCCCcE-eHHHHHHHHHHHhccccchhHHHHHhHHhhhhhccccccccCCCCcCcHHHHHHHHHh
Confidence            4578899999999986  888 8999988876542    111111 1111    11      146889999999999887


Q ss_pred             hcCCCCC----HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         326 HSKAEDI----PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       326 ~~~~~~~----~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      .......    ...+..+|+.+|.|++|.|+.+||..++....   ...+++..+|+.+|.|++|.|+++||+++++..
T Consensus        82 ~~~~~~~~~~~~~~~~~~F~~~D~d~dG~Is~~E~~~~l~~~~---~~~~~~~~~f~~~D~d~dG~Is~~Ef~~~~~~f  157 (174)
T d2scpa_          82 MVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGMLG---LDKTMAPASFDAIDTNNDGLLSLEEFVIAGSDF  157 (174)
T ss_dssp             HTSCGGGTHHHHTHHHHHHHHHCTTCSSSEEHHHHHHHHHHTT---CCGGGHHHHHHHHCTTCSSEECHHHHHHHHHHH
T ss_pred             hhcchhhHHHHHHHHHHHHHHHCCCccccCCHHHHHHHHHHHh---hhhHHHHHHHhhcCCCCCCcEeHHHHHHHHHHH
Confidence            6544222    24578899999999999999999999987663   335678999999999999999999999998763

>d2opoa1 a.39.1.10 (A:6-86) Polcalcin Che a 3 {Pigweed (Chenopodium album) [TaxId: 3559]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Polcalcin
domain: Polcalcin Che a 3
species: Pigweed (Chenopodium album) [TaxId: 3559]

Probab=99.39  E-value=4.2e-13  Score=96.18  Aligned_cols=64  Identities=22%  Similarity=0.387  Sum_probs=46.0

Q ss_pred             HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         371 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       371 ~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      .+++.+|+.+|.|++|.|+.+||+.+++.+| ..++++++.+++.+|.|++|.|+|+||+.+|..
T Consensus         6 ~e~~~~F~~~D~d~~G~I~~~El~~~l~~lg-~~~~~ei~~~~~~~D~d~~G~I~~~EF~~~~~~   69 (81)
T d2opoa1           6 ADRERIFKRFDTNGDGKISSSELGDALKTLG-SVTPDEVRRMMAEIDTDGDGFISFDEFTDFARA   69 (81)
T ss_dssp             HHHHHHHHHHCTTCSSEEEHHHHHHHHHTTT-TCCHHHHHHHHHHHCTTCSSEECHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCCCCcHHHHHHHHHHhh-cCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHHH
Confidence            3556677777777777777777777777776 357777777777777777777777777776654

>d1xo5a_ a.39.1.5 (A:) Calcium- and integrin-binding protein, CIB {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium- and integrin-binding protein, CIB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.3e-12  Score=109.51  Aligned_cols=90  Identities=21%  Similarity=0.361  Sum_probs=76.1

Q ss_pred             CCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhcc--------CCCChHHHHHHHHHhC
Q psy2947         310 KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSK--------AEDIPKEVVDAFKAAD  381 (441)
Q Consensus       310 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~--------~~~~~~~~~~~f~~~D  381 (441)
                      ++|.|+|+||+.++.........+++++.+|+.||.|++|.|+.+|+..++.....        .....+.+..+|+.+|
T Consensus        71 ~~g~I~f~EFv~~l~~~~~~~~~~~kl~~~F~~~D~d~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~D  150 (180)
T d1xo5a_          71 AKDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESD  150 (180)
T ss_dssp             TCCEECHHHHHHHHHHHSTTSCHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHC------CCCCTTHHHHHHHHHHHHC
T ss_pred             CCCcCcHHHHHHHHHHHhhcCCHHHHHHHhhccccCCCCCeeeHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHhC
Confidence            68999999999999887666566789999999999999999999999998886532        1111344677899999


Q ss_pred             CCCCCcccHHHHHHHHHH
Q psy2947         382 TTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       382 ~~~~G~is~~ef~~~l~~  399 (441)
                      .|+||.||++||++++..
T Consensus       151 ~d~dG~Is~~EF~~~~~~  168 (180)
T d1xo5a_         151 IDRDGTINLSEFQHVISR  168 (180)
T ss_dssp             TTCSSSBCHHHHHHHHHH
T ss_pred             CCCCCcCcHHHHHHHHHh
Confidence            999999999999999975

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=4.4e-13  Score=110.31  Aligned_cols=87  Identities=14%  Similarity=0.152  Sum_probs=77.0

Q ss_pred             cCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEccCCCCCccchh-hcCCCCCC
Q psy2947          77 IFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGF-LLSMPQLD  155 (441)
Q Consensus        77 ~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~  155 (441)
                      +.++..|+.|+|++|+|+.+|..+..+++|+.|++++|.|+  .++ .+..+++|++|++++|+++.+|.. +..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~--~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR--KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCC--EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCC--ccC-CcccCcchhhhhcccccccCCCccccccccccc
Confidence            45677899999999999999876788999999999999998  775 588999999999999999999854 56799999


Q ss_pred             EEEccCCcCcc
Q psy2947         156 TVYRHGNHNYF  166 (441)
Q Consensus       156 ~L~l~~N~~~~  166 (441)
                      .|++++|++..
T Consensus        91 ~L~L~~N~i~~  101 (162)
T d1a9na_          91 ELILTNNSLVE  101 (162)
T ss_dssp             EEECCSCCCCC
T ss_pred             cceeccccccc
Confidence            99999999643

>d2zkmx1 a.39.1.7 (X:142-311) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=5.1e-14  Score=116.90  Aligned_cols=127  Identities=12%  Similarity=0.163  Sum_probs=84.2

Q ss_pred             HhCCCcccHHHHHHHHHhhcCC-CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCC
Q psy2947         308 AEKGGKLSFPDFLKVMHTHSKA-EDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSG  386 (441)
Q Consensus       308 ~~~~g~i~~~ef~~~~~~~~~~-~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G  386 (441)
                      .+++|+|+++|+.+++...... ....+.+..+|...|.+++|.|+++||..++..+.    ...++..+|+.+|.|++|
T Consensus        18 ~n~dG~Is~~el~k~l~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~F~eF~~~~~~l~----~r~ei~~~F~~~d~d~~~   93 (170)
T d2zkmx1          18 LNSEGKIPVKNFFQMFPADRKRVEAALSACHLPKGKNDAINPEDFPEPVYKSFLMSLC----PRPEIDEIFTSYHAKAKP   93 (170)
T ss_dssp             CCTTSCEEHHHHHHHSCSCHHHHHHHHHHTTCCCCTTCEECGGGCCHHHHHHHHHHHS----CCHHHHTTCC--------
T ss_pred             cCCCCCCcHHHHHHHHHHhhhhHHHHHHHHhhhhccccccCCCccCHHHHHHHHhccC----CHHHHHHHHHHHcCCCCC
Confidence            4677777777777776422111 11123445557788999999999999999998773    246788999999999999


Q ss_pred             cccHHHHHHHHHHhCC----------CCCHHHHHHHHHHhCCCCC----CceeHHHHHHHHhccCC
Q psy2947         387 TVPAKYLKHVLVNWGE----------GLSSKEVDQIFREANVTMN----SKVRYEDFVKIACAPVP  438 (441)
Q Consensus       387 ~is~~ef~~~l~~~~~----------~l~~~~~~~l~~~~d~d~d----g~i~~~ef~~~l~~~~~  438 (441)
                      .||.+||+.+|.....          .++.+.++.++..+..+.+    |.|++++|+.+|....+
T Consensus        94 ~it~~el~~fL~~~Q~~~~~~e~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~d~F~~fL~S~en  159 (170)
T d2zkmx1          94 YMTKEHLTKFINQKQRDSRLNSLLFPPARPDQVQGLIDKYEPSGINAQRGQLSPEGMVWFLCGPEN  159 (170)
T ss_dssp             CCCHHHHHHHHHHTCC---------------CHHHHHHHHCCC--------CCHHHHHHHHHSTTS
T ss_pred             cccHHHHHHHHHHHhcchhhhhhccccCCHHHHHHHHHHHccccccccCCeECHHHHHHHHcCccC
Confidence            9999999999997543          2466778999999986644    78999999999976644

>d1wlza1 a.39.1.7 (A:229-311) DJ-1-binding protein, DJBP {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: DJ-1-binding protein, DJBP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=2.4e-12  Score=92.87  Aligned_cols=64  Identities=19%  Similarity=0.367  Sum_probs=61.1

Q ss_pred             hHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy2947         370 PKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA  433 (441)
Q Consensus       370 ~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l  433 (441)
                      ...+..+|+.+|.+++|.|+.+||+++|..+|.++++++++.++..+|.|++|.|+|.||+..+
T Consensus        19 ~~~l~~~F~~~D~~~~G~i~~~ef~~~l~~~~~~l~~~e~~~l~~~~d~~~~g~I~y~eFl~~f   82 (83)
T d1wlza1          19 YHAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLKYPDFLSRF   82 (83)
T ss_dssp             HHHHHHHHHHHCTTCSSCBCHHHHHHHHHHHTCCCCHHHHHHHHTTSCBCTTSCBCHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCceEChhHHHHHHHHhCCCCChhHHHHHhhccccCCCCcEeHHHHHHHh
Confidence            4678899999999999999999999999999999999999999999999999999999999875

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=7.2e-12  Score=102.14  Aligned_cols=123  Identities=12%  Similarity=-0.035  Sum_probs=96.9

Q ss_pred             CCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCc-CCCCCCch-hhhcCCCCCEEEccCCCCCccc-hhhcCCCCCC
Q psy2947          79 KCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNC-LQNASIPF-TLTFCKNLTHLYLDNNLLDALP-GFLLSMPQLD  155 (441)
Q Consensus        79 ~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~-l~~~~~p~-~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~  155 (441)
                      .+.....++.+++.+..+|..+..+++|++|++++|+ ++  .++. .|.++++|+.|+|++|+|+.|+ .+|..+++|+
T Consensus         6 ~c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~--~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~   83 (156)
T d2ifga3           6 CPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQ--HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS   83 (156)
T ss_dssp             CCSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCC--EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCC
T ss_pred             CcCCCCeEEecCCCCccCcccccCccccCeeecCCCcccc--ccCchhhccccccCcceeeccccCCccccccccccccc
Confidence            3445677899999999999999999999999998765 87  6664 6899999999999999999996 7799999999


Q ss_pred             EEEccCCcCccCcccccccccccccccccchhHHHHhhcccccCCchhhhhhhhcccccccccCCCCCCCchhhhHHHhh
Q psy2947         156 TVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEVLRKQKKLHQPSRLQDLAVQSVIASKENFFEPGLFPGPLVDYIARE  235 (441)
Q Consensus       156 ~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~l~~~~~~~~p~~l~~l~~l~~l~l~~n~~~~~~~p~~~~~~l~~~  235 (441)
                      +|+|++|++..                                +|..+.....++.+++++|++.+..--.++..|+...
T Consensus        84 ~L~Ls~N~l~~--------------------------------l~~~~~~~~~l~~L~L~~Np~~C~C~~~~l~~~~~~~  131 (156)
T d2ifga3          84 RLNLSFNALES--------------------------------LSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEG  131 (156)
T ss_dssp             EEECCSSCCSC--------------------------------CCSTTTCSCCCCEEECCSSCCCCCGGGHHHHHHHHTT
T ss_pred             ceeccCCCCcc--------------------------------cChhhhccccccccccCCCcccCCchHHHHHHHHHhc
Confidence            99999999532                                2323323335778899999998765445566666544

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.32  E-value=7.4e-12  Score=114.30  Aligned_cols=146  Identities=22%  Similarity=0.105  Sum_probs=98.3

Q ss_pred             CCCCCcccEEeccCCCcCcc-cCCCCCCCEEEccCCCCC-cCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEE
Q psy2947          57 PQYFSHAFLLSLSYTPIGRR-IFKCDTVEVLSLKSNSLT-SLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHL  134 (441)
Q Consensus        57 ~~~l~~L~~l~l~~n~i~~~-~~~l~~L~~L~l~~n~l~-~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L  134 (441)
                      +..+++|+.+++++|.+... ...+++|+.|++++|.++ ..+..|..++.++.|++++|.++ +..|..+.++++|++|
T Consensus       146 ~~~l~~L~~l~l~~n~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~-~~~~~~~~~l~~L~~L  224 (305)
T d1xkua_         146 FQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLREL  224 (305)
T ss_dssp             GGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC-EECTTTGGGSTTCCEE
T ss_pred             cccccccCccccccCCccccCcccCCccCEEECCCCcCCCCChhHhhcccccccccccccccc-ccccccccccccceee
Confidence            34567778888887743211 123567888888888877 44455778888888888888887 3334556778888888


Q ss_pred             EccCCCCCccchhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHHHhhcccccCCchhhhhhhhccccc
Q psy2947         135 YLDNNLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEVLRKQKKLHQPSRLQDLAVQSVIAS  214 (441)
Q Consensus       135 ~l~~n~l~~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~l~~~~~~~~p~~l~~l~~l~~l~l  214 (441)
                      +|++|+|+.+|..+..+++|++|+|++|++.....-.         +                ..+..+..+..|+.+++
T Consensus       225 ~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~---------f----------------~~~~~~~~~~~L~~L~L  279 (305)
T d1xkua_         225 HLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSND---------F----------------CPPGYNTKKASYSGVSL  279 (305)
T ss_dssp             ECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTS---------S----------------SCSSCCTTSCCCSEEEC
T ss_pred             ecccccccccccccccccCCCEEECCCCccCccChhh---------c----------------cCcchhcccCCCCEEEC
Confidence            8888888888877888888888888888864432100         0                01123344567888889


Q ss_pred             ccccCCCCCCCchh
Q psy2947         215 KENFFEPGLFPGPL  228 (441)
Q Consensus       215 ~~n~~~~~~~p~~~  228 (441)
                      ++|++....++...
T Consensus       280 ~~N~~~~~~~~~~~  293 (305)
T d1xkua_         280 FSNPVQYWEIQPST  293 (305)
T ss_dssp             CSSSSCGGGSCGGG
T ss_pred             CCCcCccCcCCHhH
Confidence            99988765555443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=2.7e-12  Score=116.06  Aligned_cols=104  Identities=24%  Similarity=0.291  Sum_probs=49.7

Q ss_pred             CCCcccEEeccCCCc---C-cccCCCCCCCEEEccCCCCCcCCcC-ccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCE
Q psy2947          59 YFSHAFLLSLSYTPI---G-RRIFKCDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTH  133 (441)
Q Consensus        59 ~l~~L~~l~l~~n~i---~-~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~  133 (441)
                      .+++|+.|++++|.+   + ..+....+|+.+++++|+++.+|+. |..+++|+.|++++|+++ +..|..+.++++|+.
T Consensus       103 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~-~l~~~~f~~l~~L~~  181 (284)
T d1ozna_         103 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDR  181 (284)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCE
T ss_pred             ccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCccc-ccchhhhccccccch
Confidence            355566666665522   1 2233344555555555555544433 444555555555555554 111223344555555


Q ss_pred             EEccCCCCCcc-chhhcCCCCCCEEEccCCc
Q psy2947         134 LYLDNNLLDAL-PGFLLSMPQLDTVYRHGNH  163 (441)
Q Consensus       134 L~l~~n~l~~l-p~~~~~l~~L~~L~l~~N~  163 (441)
                      +++++|+++.+ |..|..+++|++|++++|.
T Consensus       182 l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~  212 (284)
T d1ozna_         182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANN  212 (284)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             hhhhhccccccChhHhhhhhhcccccccccc
Confidence            55555555433 3444445555555555555

>d1wdcb_ a.39.1.5 (B:) Myosin Essential Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Essential Chain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=99.29  E-value=9.3e-12  Score=99.93  Aligned_cols=67  Identities=15%  Similarity=0.151  Sum_probs=59.1

Q ss_pred             CHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         332 IPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       332 ~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      ..+.+..+|+.||.|++|+|+.+||++++..+ +...+++++..+|+.+|.+ +|.|+++||.++|+.-
T Consensus        74 ~~~~l~~aF~~~D~d~~G~I~~~el~~~l~~~-g~~lt~~e~~~l~~~~d~~-~G~I~y~eF~~~l~~~  140 (142)
T d1wdcb_          74 SEETIRNAFAMFDEQETKKLNIEYIKDLLENM-GDNFNKDEMRMTFKEAPVE-GGKFDYVKFTAMIKGS  140 (142)
T ss_dssp             CHHHHHHHHHTTCTTCCSCEEHHHHHHHHHHS-SSCCCHHHHHHHHHHCCEE-TTEECHHHHHHHHHTS
T ss_pred             hhhhHHHhhhhhcccCCCcccHHHHHHHHHHc-cccCCHHHHHHHHHHhCCC-CCEEcHHHHHHHHhcC
Confidence            34678889999999999999999999999887 4556788999999999998 5999999999999754

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=4.3e-12  Score=111.80  Aligned_cols=187  Identities=16%  Similarity=0.182  Sum_probs=120.3

Q ss_pred             CCCC-CccCCC-CccCCC---CCCCCC-CcccEEeccCCCc---Cc-ccCCCCCCCEEEccCCCCC-cCCcC-ccCCCCC
Q psy2947          39 CQRN-CSLEVG-GICSHI---WIPQYF-SHAFLLSLSYTPI---GR-RIFKCDTVEVLSLKSNSLT-SLPPD-IGRLTNL  106 (441)
Q Consensus        39 C~~~-c~~~~~-~~c~~~---~~~~~l-~~L~~l~l~~n~i---~~-~~~~l~~L~~L~l~~n~l~-~lp~~-~~~l~~L  106 (441)
                      |+.. |+|... +.|...   .+|..+ ++++.|++++|.|   |. .+.++++|++|++++|.+. .+|.. |..++.+
T Consensus         1 ~~~~~C~C~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l   80 (242)
T d1xwdc1           1 CHHRICHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL   80 (242)
T ss_dssp             CCCSSEEECSSEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTC
T ss_pred             CcCCcCCCcCCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccc
Confidence            5544 888654 668753   345544 4899999999955   43 4678999999999999987 45554 8889999


Q ss_pred             cEEEccC-CcCCCCCCchhhhcCCCCCEEEccCCCCCccch--hhcCCCCCCEEEccCCcCccCcccc--cc--------
Q psy2947         107 RVLCLTD-NCLQNASIPFTLTFCKNLTHLYLDNNLLDALPG--FLLSMPQLDTVYRHGNHNYFKSTFM--WY--------  173 (441)
Q Consensus       107 ~~L~l~~-n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~--~~~~l~~L~~L~l~~N~~~~~~~~~--~~--------  173 (441)
                      ++|.+.. |.+. ...+..+.++++|+++++++|.+..++.  .+..+..+..+..+++.+.......  ..        
T Consensus        81 ~~l~~~~~n~l~-~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~  159 (242)
T d1xwdc1          81 HEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILW  159 (242)
T ss_dssp             CEEEEECCTTCC-EECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEE
T ss_pred             cccccccccccc-ccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeee
Confidence            9998764 5666 3444557889999999999999876652  2333444555555555442221100  00        


Q ss_pred             -----cccccccccccchhHHH--HhhcccccCCc-hhhhhhhhcccccccccCCCCCCCchh
Q psy2947         174 -----HSDIHARIRSTSTRDEV--LRKQKKLHQPS-RLQDLAVQSVIASKENFFEPGLFPGPL  228 (441)
Q Consensus       174 -----~~~~p~~l~~l~~~~~~--l~~~~~~~~p~-~l~~l~~l~~l~l~~n~~~~~~~p~~~  228 (441)
                           ...++..+.....+..+  +.++.+..+|. .+..+++|+.|++++|.+..  +|...
T Consensus       160 l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~--l~~~~  220 (242)
T d1xwdc1         160 LNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS--LPSYG  220 (242)
T ss_dssp             CCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCC--CCSSS
T ss_pred             cccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCc--cCHHH
Confidence                 01122222222222222  56677888875 46889999999999998764  66543

>d1jc2a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.27  E-value=8.1e-12  Score=87.81  Aligned_cols=70  Identities=13%  Similarity=0.287  Sum_probs=63.5

Q ss_pred             CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         330 EDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       330 ~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      ..++++++.+|+.||.+++|+|+..||+.++..+ +...+.++++.+|+.+|.+++|.|+++||.++|+.+
T Consensus         5 ~~~eeel~~~F~~fD~~~~G~I~~~el~~~l~~l-g~~~~~~e~~~~~~~~D~d~dg~I~~~EF~~~m~~~   74 (75)
T d1jc2a_           5 GKSEEELANCFRIFDKNADGFIDIEELGEILRAT-GEHVIEEDIEDLMKDSDKNNDGRIDFDEFLKMMEGV   74 (75)
T ss_dssp             CCCHHHHHHHHHHHCCSTTSSEEHHHHHHHHHHS-SSCCCHHHHHHHHHHHCSSSCSEECHHHHHHHHHTC
T ss_pred             CCcHHHHHHHHHHHcCCCcCeEcHHHHHHHHHhc-CCCccHHHHHHHHHHhCCCCCCcEeHHHHHHHHHhC
Confidence            4567899999999999999999999999999887 456678899999999999999999999999999753

>d1fw4a_ a.39.1.5 (A:) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.27  E-value=5.3e-12  Score=86.17  Aligned_cols=64  Identities=22%  Similarity=0.325  Sum_probs=58.4

Q ss_pred             HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy2947         333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVL  397 (441)
Q Consensus       333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l  397 (441)
                      +++++.+|+.||.|++|+|+.+||+.++..+ +....+++++.+|+.+|.|++|.|+++||.++|
T Consensus         2 eeel~~aF~~fD~d~~G~I~~~el~~~l~~l-g~~~~~~e~~~l~~~~D~d~~g~I~~~eF~~~m   65 (65)
T d1fw4a_           2 EEEIREAFRVFDKDGNGYISAAELRHVMTNL-GEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM   65 (65)
T ss_dssp             CHHHHHHHHHHCTTCSSEECHHHHHHHHHHT-TCCCCHHHHHHHHHTTCTTCSSSEEHHHHHHHC
T ss_pred             HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHh-CCCCCHHHHHHHHHHcCCCCCCcEeHHHHHHHC
Confidence            5789999999999999999999999999887 455667899999999999999999999999874

>d1lkja_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.25  E-value=2e-11  Score=98.45  Aligned_cols=117  Identities=21%  Similarity=0.336  Sum_probs=94.8

Q ss_pred             hHHHHHhhhccccCCCccCHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhc
Q psy2947         265 YLEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAAD  344 (441)
Q Consensus       265 ~~~l~~~f~~~d~~G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D  344 (441)
                      ..+++.++...   |...+..++..++....            .++.+.+++++|...+..........+.++.+|+.||
T Consensus        29 ~~e~~~~l~~~---g~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aF~~~D   93 (146)
T d1lkja_          29 SSELATVMRSL---GLSPSEAEVNDLMNEID------------VDGNHQIEFSEFLALMSRQLKSNDSEQELLEAFKVFD   93 (146)
T ss_dssp             HHHHHHHHHHH---TCCCCHHHHHHHHHHHC------------SSSCCEEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhc---CCCCCHHHHHHHHHHhc------------cCCcccccHHHHHHHHHHhhccccHHHHHHHHHHHhC
Confidence            45555555332   43336666666666544            5678999999999999888777667789999999999


Q ss_pred             CCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy2947         345 TTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLV  398 (441)
Q Consensus       345 ~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~  398 (441)
                      .+++|.|+.+||++++... +....+++++.+|+.+| +++|.|+++||+++|.
T Consensus        94 ~d~~G~I~~~el~~~l~~~-g~~~~~~~~~~~~~~~d-d~dG~I~~~eF~~~m~  145 (146)
T d1lkja_          94 KNGDGLISAAELKHVLTSI-GEKLTDAEVDDMLREVS-DGSGEINIQQFAALLS  145 (146)
T ss_dssp             SSSSCEEEHHHHHHHHHHH-TCSCCHHHHHHHHHHHC-CSSSEEEHHHHHHHHC
T ss_pred             CCCCCcCcHHHHHHHHHHc-CCcccHHHHHHHHHhcc-CCCCeEeHHHHHHHhC
Confidence            9999999999999999877 45666789999999999 9999999999999884

>d2opoa1 a.39.1.10 (A:6-86) Polcalcin Che a 3 {Pigweed (Chenopodium album) [TaxId: 3559]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Polcalcin
domain: Polcalcin Che a 3
species: Pigweed (Chenopodium album) [TaxId: 3559]

Probab=99.25  E-value=1.4e-11  Score=88.03  Aligned_cols=66  Identities=21%  Similarity=0.220  Sum_probs=59.6

Q ss_pred             HHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhC
Q psy2947         334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWG  401 (441)
Q Consensus       334 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~  401 (441)
                      .+++++|+.||.|++|.|+..|+..++..+.  ....+++..+|+.+|.|++|.|+++||..+|+...
T Consensus         6 ~e~~~~F~~~D~d~~G~I~~~El~~~l~~lg--~~~~~ei~~~~~~~D~d~~G~I~~~EF~~~~~~~~   71 (81)
T d2opoa1           6 ADRERIFKRFDTNGDGKISSSELGDALKTLG--SVTPDEVRRMMAEIDTDGDGFISFDEFTDFARANR   71 (81)
T ss_dssp             HHHHHHHHHHCTTCSSEEEHHHHHHHHHTTT--TCCHHHHHHHHHHHCTTCSSEECHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHCCCCCCCCcHHHHHHHHHHhh--cCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHCc
Confidence            4678999999999999999999999998874  45678999999999999999999999999998743

>d1c7va_ a.39.1.5 (A:) Calcium vector protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium vector protein
species: Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]

Probab=99.25  E-value=3.1e-12  Score=88.04  Aligned_cols=66  Identities=24%  Similarity=0.392  Sum_probs=60.3

Q ss_pred             HHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       334 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      ++++++|+.||.+++|+|+.+||+.++..+.....+.++++.+|+.+|.|++|.|+++||.++|++
T Consensus         2 eel~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~s~~e~~~~~~~~D~d~dG~i~~~EF~~~m~r   67 (68)
T d1c7va_           2 EEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDIPEFMDLIKK   67 (68)
T ss_dssp             HHHHHHHHHHSCSGGGEECHHHHHHHSSTTTTCCCCHHHHHHHHHHHCSSGGGSEEHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCCCcCeEcHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHh
Confidence            578999999999999999999999999988655567899999999999999999999999999863

>d1oqpa_ a.39.1.5 (A:) Caltractin (centrin 2) {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Caltractin (centrin 2)
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.24  E-value=1.3e-11  Score=87.37  Aligned_cols=70  Identities=17%  Similarity=0.304  Sum_probs=62.8

Q ss_pred             CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         330 EDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       330 ~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      ..++++++++|+.||.|++|+|+.+||+.++.... .....+++..+|+.+|.|++|.|+++||.++|++.
T Consensus         5 ~d~~e~l~~~F~~~D~d~~G~I~~~el~~~l~~~g-~~~~~~e~~~~~~~~D~d~~G~I~~~EF~~~m~k~   74 (77)
T d1oqpa_           5 RDSREEILKAFRLFDDDNSGTITIKDLRRVAKELG-ENLTEEELQEMIAEADRNDDNEIDEDEFIRIMKKT   74 (77)
T ss_dssp             SSHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHHT-CCCCHHHHHHHHHHHCCSSSSEECHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHcCCCCCEechHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHcc
Confidence            35567899999999999999999999999999874 45567899999999999999999999999999864

>d1qx2a_ a.39.1.1 (A:) Calbindin D9K {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calbindin D9K
domain: Calbindin D9K
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.24  E-value=4.7e-12  Score=89.45  Aligned_cols=66  Identities=21%  Similarity=0.404  Sum_probs=55.5

Q ss_pred             hHHHHHHHHHhCCC--CCCcccHHHHHHHHHHhCCCCC--HHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         370 PKEVVDAFKAADTT--KSGTVPAKYLKHVLVNWGEGLS--SKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       370 ~~~~~~~f~~~D~~--~~G~is~~ef~~~l~~~~~~l~--~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      .++++.+|+.||.+  ++|+|+.+||+++++.+|..++  +.+++.+++.+|.|+||.|+|+||+.+|.+
T Consensus         4 ~eel~~~F~~fd~~~~~~G~I~~~El~~~l~~lg~~~~~~~~ei~~~~~~~D~d~dG~I~f~EF~~~m~~   73 (76)
T d1qx2a_           4 PEEIKGAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVSFEEFLVMMKK   73 (76)
T ss_dssp             HHHHHHHHHHHHTSSSCTTSEEHHHHHHHHHHHGGGSCTTSCSHHHHHHHHCTTCSSEECHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccCCCCCEECHHHHHHHHHHhCCcCCCCHHHHHHHHHHhhcCCCCcCcHHHHHHHHHH
Confidence            57888999998654  4699999999999999886554  457889999999999999999999998865

>d1tiza_ a.39.1.5 (A:) Calmodulin-related protein T21P5.17 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin-related protein T21P5.17
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.24  E-value=1e-11  Score=85.32  Aligned_cols=63  Identities=22%  Similarity=0.341  Sum_probs=58.0

Q ss_pred             HHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         336 VVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       336 ~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      ++++|+.+|.|++|.|+..||..++..+ +.....++++.+|+.+|.|++|.|+++||.++|.+
T Consensus         3 ~r~~F~~~D~d~~G~I~~~El~~~l~~l-g~~~~~~~i~~~~~~~D~d~dg~I~~~EF~~~m~~   65 (67)
T d1tiza_           3 AKRVFEKFDKNKDGKLSLDEFREVALAF-SPYFTQEDIVKFFEEIDVDGNGELNADEFTSCIEK   65 (67)
T ss_dssp             HHHHHHHHCTTSSSCEEHHHHHHHHHHT-CTTSCHHHHHHHHHHHCCSSSSEECHHHHHHHHHT
T ss_pred             HHHHHHHHCCCCcCcCcHHHHHHHHHHh-ccccchHHHHHHHHHhCCCCCCeEeHHHHHHHHHH
Confidence            6889999999999999999999999887 45566889999999999999999999999999875

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.24  E-value=1.8e-11  Score=115.15  Aligned_cols=146  Identities=20%  Similarity=0.204  Sum_probs=106.3

Q ss_pred             CCCCcccEEeccCCCcC--cccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEE
Q psy2947          58 QYFSHAFLLSLSYTPIG--RRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLY  135 (441)
Q Consensus        58 ~~l~~L~~l~l~~n~i~--~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~  135 (441)
                      ...++|+.|++++|.+.  +.+..+++|+.|++++|.++.+++ +..+++|+.|++++|.++  .++ .+..+..++.+.
T Consensus       216 ~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~~~l~--~~~-~~~~~~~l~~l~  291 (384)
T d2omza2         216 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQIS--NIS-PLAGLTALTNLE  291 (384)
T ss_dssp             GGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCC--CCG-GGTTCTTCSEEE
T ss_pred             cccCCCCEEECCCCCCCCcchhhcccccchhccccCccCCCCc-ccccccCCEeeccCcccC--CCC-cccccccccccc
Confidence            34678889999988553  356778889999999999887764 778889999999999887  554 366777788888


Q ss_pred             ccCCCCCccchhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCchhhhhhhhccccc
Q psy2947         136 LDNNLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSRLQDLAVQSVIAS  214 (441)
Q Consensus       136 l~~n~l~~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~l~~l~~l~~l~l  214 (441)
                      ++.|.+..++. +..+++++.|++++|.+...          + .+..++.+..+ +++|.++.+| .+..+++|+.|++
T Consensus       292 ~~~n~l~~~~~-~~~~~~l~~L~ls~n~l~~l----------~-~l~~l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l  358 (384)
T d2omza2         292 LNENQLEDISP-ISNLKNLTYLTLYFNNISDI----------S-PVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSA  358 (384)
T ss_dssp             CCSSCCSCCGG-GGGCTTCSEEECCSSCCSCC----------G-GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCCEEEC
T ss_pred             ccccccccccc-cchhcccCeEECCCCCCCCC----------c-ccccCCCCCEEECCCCCCCCCh-hHcCCCCCCEEEC
Confidence            88888776653 56677788888888875321          1 14455555555 6777777666 5777888888888


Q ss_pred             ccccCC
Q psy2947         215 KENFFE  220 (441)
Q Consensus       215 ~~n~~~  220 (441)
                      ++|.+.
T Consensus       359 ~~N~l~  364 (384)
T d2omza2         359 GHNQIS  364 (384)
T ss_dssp             CSSCCC
T ss_pred             CCCcCC
Confidence            887665

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.23  E-value=3.3e-11  Score=104.90  Aligned_cols=147  Identities=20%  Similarity=0.218  Sum_probs=102.4

Q ss_pred             CCCCcccEEeccCCCcC--cccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEE
Q psy2947          58 QYFSHAFLLSLSYTPIG--RRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLY  135 (441)
Q Consensus        58 ~~l~~L~~l~l~~n~i~--~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~  135 (441)
                      ..+++|+.|++++|.|.  ..+..+++|+++++++|.++.++ .+..+++|+.++++++...  .++ .+...+.+..+.
T Consensus        60 ~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~l~l~~~~~~--~~~-~~~~~~~~~~l~  135 (227)
T d1h6ua2          60 QYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQIT--DVT-PLAGLSNLQVLY  135 (227)
T ss_dssp             GGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCC--CCG-GGTTCTTCCEEE
T ss_pred             hcCCCCcEeecCCceeeccccccccccccccccccccccccc-ccccccccccccccccccc--ccc-hhccccchhhhh
Confidence            45788888888888553  23677888888888888888765 4777888888888888776  332 355566777777


Q ss_pred             ccCCCCCccchhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCchhhhhhhhccccc
Q psy2947         136 LDNNLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSRLQDLAVQSVIAS  214 (441)
Q Consensus       136 l~~n~l~~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~l~~l~~l~~l~l  214 (441)
                      ++.+.+...+. +..+++|+.|++++|.+....           .+..++.+..+ +++|.+..+| .+..+++|+.|++
T Consensus       136 ~~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~~-----------~l~~l~~L~~L~Ls~n~l~~l~-~l~~l~~L~~L~L  202 (227)
T d1h6ua2         136 LDLNQITNISP-LAGLTNLQYLSIGNAQVSDLT-----------PLANLSKLTTLKADDNKISDIS-PLASLPNLIEVHL  202 (227)
T ss_dssp             CCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG-----------GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEEC
T ss_pred             chhhhhchhhh-hccccccccccccccccccch-----------hhcccccceecccCCCccCCCh-hhcCCCCCCEEEC
Confidence            77776655432 456778888888888753221           24445555555 6777777776 4778888888888


Q ss_pred             ccccCCC
Q psy2947         215 KENFFEP  221 (441)
Q Consensus       215 ~~n~~~~  221 (441)
                      ++|.+..
T Consensus       203 s~N~lt~  209 (227)
T d1h6ua2         203 KNNQISD  209 (227)
T ss_dssp             TTSCCCB
T ss_pred             cCCcCCC
Confidence            8887653

>d1fi5a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]

Probab=99.22  E-value=1.2e-11  Score=88.49  Aligned_cols=68  Identities=12%  Similarity=0.266  Sum_probs=61.8

Q ss_pred             CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         331 DIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       331 ~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      .++++++.+|+.||.|++|+|+.+||..++..+ +.....+++..+|+.+|.|++|.|+++||.++|+.
T Consensus        12 ~~ee~l~~~F~~~D~d~~G~I~~~el~~~l~~~-g~~~~~~ev~~~~~~~D~d~dg~I~~~EF~~~m~~   79 (81)
T d1fi5a_          12 KTEEELSDLFRMFDKNADGYIDLEELKIMLQAT-GETITEDDIEELMKDGDKNNDGRIDYDEFLEFMKG   79 (81)
T ss_dssp             CCHHHHHHHHHHHCSSCSSEECHHHHHHHHHTS-SSCCCHHHHHHHHHHHCSSSSSSEEHHHHHHHHSC
T ss_pred             CCHHHHHHHHHHHcCCCCCcccHHHHHHHHHhc-CCCCCHHHHHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence            457889999999999999999999999999887 45566789999999999999999999999999864

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.22  E-value=3.3e-14  Score=121.39  Aligned_cols=103  Identities=21%  Similarity=0.235  Sum_probs=79.6

Q ss_pred             CCCcccEEeccCCCcC--cccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEc
Q psy2947          59 YFSHAFLLSLSYTPIG--RRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYL  136 (441)
Q Consensus        59 ~l~~L~~l~l~~n~i~--~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l  136 (441)
                      .+++|+.|+|++|.|.  +.+..+++|+.|+|++|+|+.+|..+..+++|+.|++++|+++  .++ .+..+++|+.|++
T Consensus        46 ~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~--~l~-~~~~l~~L~~L~L  122 (198)
T d1m9la_          46 TLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIA--SLS-GIEKLVNLRVLYM  122 (198)
T ss_dssp             HTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECC--CHH-HHHHHHHSSEEEE
T ss_pred             cccccceeECcccCCCCcccccCCccccChhhccccccccccccccccccccccccccccc--ccc-ccccccccccccc
Confidence            3678888888888443  2456678888888888888888765555667888888888887  554 4777888888888


Q ss_pred             cCCCCCccc--hhhcCCCCCCEEEccCCcC
Q psy2947         137 DNNLLDALP--GFLLSMPQLDTVYRHGNHN  164 (441)
Q Consensus       137 ~~n~l~~lp--~~~~~l~~L~~L~l~~N~~  164 (441)
                      ++|+|+.++  ..+..+++|+.|++++|++
T Consensus       123 ~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         123 SNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             SEEECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             ccchhccccccccccCCCccceeecCCCcc
Confidence            888888776  4677888888888888884

>d1dtla_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.22  E-value=2.4e-11  Score=99.14  Aligned_cols=120  Identities=16%  Similarity=0.308  Sum_probs=93.6

Q ss_pred             chHHHHHhhhccccCCCccCHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCC---CCCHHHHHHHH
Q psy2947         264 PYLEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKA---EDIPKEVVDAF  340 (441)
Q Consensus       264 ~~~~l~~~f~~~d~~G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~---~~~~~~~~~~f  340 (441)
                      ...+++.++..+   |...+..++..++...+            .+++|.+++++|...+......   ....+.+..+|
T Consensus        33 ~~~e~~~~l~~l---g~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F   97 (156)
T d1dtla_          33 STKELGKVMRML---GQNPTPEELQEMIDEVD------------EDGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLF   97 (156)
T ss_dssp             CHHHHHHHHHHT---TCCCCHHHHHHHHHHHC------------TTSSSSBCHHHHHHHHHHHHC-----CHHHHHHHHH
T ss_pred             CHHHHHHHHHHc---CCCCCHHHHHHHHHHhh------------ccCCCccchhhhhhhhhhcccccccccHHHHHHHHH
Confidence            355666666444   43336788888887766            6788999999998876644332   24467799999


Q ss_pred             HhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         341 KAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       341 ~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      +.||.+++|+|+.+||++++... ....++++++.+|+.+|.|++|.|+++||+++|+.
T Consensus        98 ~~~D~d~~G~I~~~e~~~~~~~~-~~~ls~~e~~~i~~~~D~d~dG~I~~~eF~~~l~g  155 (156)
T d1dtla_          98 RMFDKNADGYIDLEELKIMLQAT-GETITEDDIEELMKDGDKNNDGRIDYDEFLEFMKG  155 (156)
T ss_dssp             HHHCTTCSSEEEHHHHGGGGTTC---CCCHHHHHHHHHHHCTTSSSEEEHHHHHHHHHC
T ss_pred             HHhCcCCCCcCcHHHHHHHHhhc-CCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHcC
Confidence            99999999999999999988766 45666889999999999999999999999999974

>d2zfda1 a.39.1.5 (A:32-214) Calcineurin B-like protein 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcineurin B-like protein 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.21  E-value=2.1e-11  Score=102.37  Aligned_cols=141  Identities=13%  Similarity=0.213  Sum_probs=112.1

Q ss_pred             ceecccchHHHHHhhhcccc----CCCccCHHHHHHHHHHcCCCcCH---HHHHHHHHhCCCcccHHHHHHHHHhhcCCC
Q psy2947         258 VFTFKTPYLEFRECFFLFAR----NGTIKTLDELSVIMRSLGMSPTI---AELKKYLAEKGGKLSFPDFLKVMHTHSKAE  330 (441)
Q Consensus       258 ~~l~~~~~~~l~~~f~~~d~----~G~i~~~~el~~~~~~~~~~~~~---~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~  330 (441)
                      ..++..++..+.+.|..+|.    +|.+ +.++++.++...+..+..   .-+..+..+++|.|+++||+.++.......
T Consensus         9 t~Fs~~ei~~L~~~F~~~d~~~~~~G~i-~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~dg~I~f~EFl~~l~~~~~~~   87 (183)
T d2zfda1           9 TVFSVSEIEALYELFKKISSAVIDDGLI-NKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNA   87 (183)
T ss_dssp             SSCCHHHHHHHHHHHHHHHTSSSCSSSB-CHHHHHHHHHSCSSCCCHHHHHHHHHHCSSCSSSBCHHHHHHHHHHTSTTS
T ss_pred             CCCCHHHHHHHHHHHHHHCcCCCCCCcC-cHHHHHHHHHhcCCCCCHHHHHHHHHHccCCCCcCcHHHHHHHHHhhhccC
Confidence            35678899999999988875    5889 899999999877665443   222333347899999999999998776555


Q ss_pred             CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhc---cCCCCh----HHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         331 DIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHS---KAEDIP----KEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       331 ~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~---~~~~~~----~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      ...+.++.+|+.+|.|++|.|+.+|+..++....   .....+    +.+..+|+.+|.|++|.|+++||++++..
T Consensus        88 ~~~~~~~~~F~~~D~d~~G~Is~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~D~d~dG~Is~~EF~~~~~~  163 (183)
T d2zfda1          88 PIDDKIHFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDGKIDKEEWRSLVLR  163 (183)
T ss_dssp             CHHHHHHHHHHHHCTTSSSSEEHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHCSSCSSEECHHHHHHHHHH
T ss_pred             cHHHHHHHhhcccccCCCCCccHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHH
Confidence            6678899999999999999999999999776432   112222    34667899999999999999999999976

>d1wdcc_ a.39.1.5 (C:) Myosin Regulatory Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Regulatory Chain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=99.20  E-value=5.4e-11  Score=96.54  Aligned_cols=117  Identities=15%  Similarity=0.158  Sum_probs=90.9

Q ss_pred             HHHHHhhhccccCCCccCHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhcCC-CCCHHHHHHHHHhhc
Q psy2947         266 LEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKA-EDIPKEVVDAFKAAD  344 (441)
Q Consensus       266 ~~l~~~f~~~d~~G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~-~~~~~~~~~~f~~~D  344 (441)
                      .+++.++..   -|..++..++..+.. ..            .+++|.|+++||+.++...... ....+++..+|+.||
T Consensus        29 ~el~~~l~~---lG~~~t~~e~~~~~~-~~------------~~~~~~i~~~eFl~~~~~~~~~~~~~~~~l~~aF~~~D   92 (152)
T d1wdcc_          29 FKLGDVCRC---LGINPRNEDVFAVGG-TH------------KMGEKSLPFEEFLPAYEGLMDCEQGTFADYMEAFKTFD   92 (152)
T ss_dssp             GGHHHHHHH---TTCCCCHHHHHHTTC-CS------------STTSCEECHHHHHHHHHHHTTSCCCCHHHHHHHHHTTC
T ss_pred             HHHHHHHHH---hccCccHhhhhhhhh-hh------------ccccccccccccccccccccccchhHHHhhhhhhhccc
Confidence            344444432   354446677765432 22            5678999999999999876543 566788999999999


Q ss_pred             CCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCC--CCCCcccHHHHHHHHHH
Q psy2947         345 TTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADT--TKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       345 ~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~--~~~G~is~~ef~~~l~~  399 (441)
                      .+++|+|+.+||+.++..+ +...+++++..+++.+|.  |++|.|+++||.+.|..
T Consensus        93 ~~~~G~I~~~el~~~l~~~-g~~ls~~e~~~l~~~~d~~~d~~G~I~y~eF~~~~~~  148 (152)
T d1wdcc_          93 REGQGFISGAELRHVLTAL-GERLSDEDVDEIIKLTDLQEDLEGNVKYEDFVKKVMA  148 (152)
T ss_dssp             SSSSSEEEHHHHHHHHHHS-SSCCCHHHHHHHHHHHTCCCCTTSEEEHHHHHHHHHH
T ss_pred             cccCccchHHHHHHHHHHc-CCCCCHHHHHHHHHHhccCCCCCCEEEHHHHHHHHhc
Confidence            9999999999999999877 556678899999999986  45689999999999864

>d1auib_ a.39.1.5 (B:) Calcineurin regulatory subunit (B-chain) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcineurin regulatory subunit (B-chain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=3.8e-11  Score=98.93  Aligned_cols=93  Identities=18%  Similarity=0.249  Sum_probs=79.9

Q ss_pred             HhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCC----hHHHHHHHHHhCCC
Q psy2947         308 AEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDI----PKEVVDAFKAADTT  383 (441)
Q Consensus       308 ~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~----~~~~~~~f~~~D~~  383 (441)
                      .+++|.|+++||+.++..........+.++.+|+.+|.|++|.|+.+|+.+++.........    ++.+..+|+.+|.|
T Consensus        59 ~~~~g~i~~~EFl~~~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~D~~  138 (165)
T d1auib_          59 TDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKD  138 (165)
T ss_dssp             TTCSSSEEHHHHHHHHGGGCTTCCHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCTT
T ss_pred             cccchhhhhhhhhhhccccccchhhHHHHHHHHHHhcccccccccHHHHHHHHHHhccccCchHHHHHHHHHHHHHcCCC
Confidence            67899999999999999877666667889999999999999999999999998765443332    34577899999999


Q ss_pred             CCCcccHHHHHHHHHHh
Q psy2947         384 KSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       384 ~~G~is~~ef~~~l~~~  400 (441)
                      ++|.|+++||.++|..+
T Consensus       139 ~dG~Is~~EF~~i~~~~  155 (165)
T d1auib_         139 GDGRISFEEFCAVVGGL  155 (165)
T ss_dssp             SSSSEEHHHHHHHHGGG
T ss_pred             CCCcEeHHHHHHHHhcC
Confidence            99999999999999864

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.17  E-value=3.5e-13  Score=114.83  Aligned_cols=114  Identities=17%  Similarity=0.297  Sum_probs=91.5

Q ss_pred             cCcccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEccCCCCCccchhhcCCC
Q psy2947          73 IGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNLLDALPGFLLSMP  152 (441)
Q Consensus        73 i~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~  152 (441)
                      +|..+..+++|++|+|++|+|+.++ .+..+++|+.|++++|.|+  .+|.....+++|++|++++|+|+.++. +..++
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~--~i~~~~~~~~~L~~L~l~~N~i~~l~~-~~~l~  115 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQIASLSG-IEKLV  115 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEEC--SCSSHHHHHHHCCEEECSEEECCCHHH-HHHHH
T ss_pred             hhhHHhcccccceeECcccCCCCcc-cccCCccccChhhcccccc--ccccccccccccccccccccccccccc-ccccc
Confidence            4567888999999999999999886 5999999999999999998  888766667889999999999998864 67789


Q ss_pred             CCCEEEccCCcCccCcccccccccccccccccchhHHH-Hhhccccc
Q psy2947         153 QLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLH  198 (441)
Q Consensus       153 ~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~  198 (441)
                      +|+.|++++|++.....        ...+..++.+..+ +.+|.+..
T Consensus       116 ~L~~L~L~~N~i~~~~~--------~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_         116 NLRVLYMSNNKITNWGE--------IDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             HSSEEEESEEECCCHHH--------HHHHTTTTTCSEEEECSSHHHH
T ss_pred             cccccccccchhccccc--------cccccCCCccceeecCCCcccc
Confidence            99999999999743221        1245566666666 66666533

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.16  E-value=5.7e-11  Score=103.36  Aligned_cols=163  Identities=17%  Similarity=0.170  Sum_probs=105.9

Q ss_pred             CCcccEEeccCCCcC--cccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEcc
Q psy2947          60 FSHAFLLSLSYTPIG--RRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLD  137 (441)
Q Consensus        60 l~~L~~l~l~~n~i~--~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~  137 (441)
                      +.+|+.|++.+|.|.  +.+..+++|++|++++|+++.+++ +..+++|+.|++++|.++  .++ .+..+++|+.+.++
T Consensus        40 l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~~--~i~-~l~~l~~L~~l~l~  115 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLK--NVS-AIAGLQSIKTLDLT  115 (227)
T ss_dssp             HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCS--CCG-GGTTCTTCCEEECT
T ss_pred             cCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeecccc-cccccccccccccccccc--ccc-cccccccccccccc
Confidence            567778888777443  346677888888888888776643 777788888888888776  555 46777888888888


Q ss_pred             CCCCCccchhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCchhhhhhhhccccccc
Q psy2947         138 NNLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSRLQDLAVQSVIASKE  216 (441)
Q Consensus       138 ~n~l~~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~l~~l~~l~~l~l~~  216 (441)
                      ++.+..++. +...+.+..+.++.+.+.....           +...+.+..+ +.++.+...+ .+..+++|+.+++++
T Consensus       116 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~-----------~~~~~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~Ls~  182 (227)
T d1h6ua2         116 STQITDVTP-LAGLSNLQVLYLDLNQITNISP-----------LAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADD  182 (227)
T ss_dssp             TSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-----------GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCS
T ss_pred             cccccccch-hccccchhhhhchhhhhchhhh-----------hccccccccccccccccccch-hhcccccceecccCC
Confidence            777765543 4456777777777776533221           2233333333 5556665555 588999999999999


Q ss_pred             ccCCCCCCCchhhhHHHhhhcCCccc
Q psy2947         217 NFFEPGLFPGPLVDYIAREYNQYHVC  242 (441)
Q Consensus       217 n~~~~~~~p~~~~~~l~~~~~~~~~~  242 (441)
                      |.+..  +|. +.......+..+.+|
T Consensus       183 n~l~~--l~~-l~~l~~L~~L~Ls~N  205 (227)
T d1h6ua2         183 NKISD--ISP-LASLPNLIEVHLKNN  205 (227)
T ss_dssp             SCCCC--CGG-GGGCTTCCEEECTTS
T ss_pred             CccCC--Chh-hcCCCCCCEEECcCC
Confidence            97653  543 333233333444444

>d1m45a_ a.39.1.5 (A:) Myosin Light Chain Mlc1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Light Chain Mlc1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.16  E-value=1.1e-10  Score=93.94  Aligned_cols=119  Identities=14%  Similarity=0.188  Sum_probs=90.4

Q ss_pred             hHHHHHhhhccccCCCccCHHHHHHHHHHcCCCcCHHHHHHHHHhCCCcccHHHHHHHHHhhc-----CCCCCHHHHHHH
Q psy2947         265 YLEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHS-----KAEDIPKEVVDA  339 (441)
Q Consensus       265 ~~~l~~~f~~~d~~G~i~~~~el~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~-----~~~~~~~~~~~~  339 (441)
                      ..++..++..+   |.-.+.+++..++.....           .+.+|.|++++|..++....     ......+.+..+
T Consensus        21 ~~el~~~l~~l---g~~~s~~ei~~l~~~~~~-----------~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~l~~~   86 (146)
T d1m45a_          21 KDSLGDYLRAI---GYNPTNQLVQDIINADSS-----------LRDASSLTLDQITGLIEVNEKELDATTKAKTEDFVKA   86 (146)
T ss_dssp             GGGHHHHHHHT---TCCCCHHHHHHHHHC--C-----------C--CCEEEHHHHHHHHHHTHHHHHGGGCCCTHHHHHH
T ss_pred             HHHHHHHHHHc---CCchhHHHHhhhhccccc-----------cccccccccchhhhhhhhhcccccccccchHHHHHHH
Confidence            34455555443   433378888888764331           24578999999999886432     223456789999


Q ss_pred             HHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy2947         340 FKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLV  398 (441)
Q Consensus       340 f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~  398 (441)
                      |+.+|.+++|.|+.+||..++... +....++++..+|+.+|.|++|.|+++||.+++.
T Consensus        87 F~~~D~~~~G~I~~~el~~~l~~~-g~~l~~~ei~~l~~~~D~d~dG~I~y~eF~~~i~  144 (146)
T d1m45a_          87 FQVFDKESTGKVSVGDLRYMLTGL-GEKLTDAEVDELLKGVEVDSNGEIDYKKFIEDVL  144 (146)
T ss_dssp             HHTTCSSSSSEEEHHHHHHHHHHS-TTCCCHHHHHHHHTTCCCCTTSEEEHHHHHHHHH
T ss_pred             HHhhccccccccchhhhhhhhccc-CCcchHHHHHHHHHHhCCCCCCcEEHHHHHHHHH
Confidence            999999999999999999999987 4556688999999999999999999999987763

>d2fcea1 a.39.1.5 (A:84-144) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.15  E-value=5.2e-11  Score=79.92  Aligned_cols=61  Identities=21%  Similarity=0.309  Sum_probs=55.4

Q ss_pred             HHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHH
Q psy2947         334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKH  395 (441)
Q Consensus       334 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~  395 (441)
                      ++++++|+.||.+++|+|+..||+.++... +......++..+|+.+|.+++|.|+++||.+
T Consensus         1 Eel~~aF~~fD~~~~G~I~~~el~~~l~~~-g~~~~~~ei~~l~~~~D~d~dg~I~~~eFl~   61 (61)
T d2fcea1           1 EDFVKAFQVFDKESTGKVSVGDLRYMLTGL-GEKLTDAEVDELLKGVEVDSNGEIDYKKFIE   61 (61)
T ss_dssp             HHHHHHHHHHCTTCCSCEEHHHHHHHHHHT-TCCCCHHHHHHHHTTCCCCTTSEECHHHHHH
T ss_pred             ChHHHHHHHHCCCCCCeEeHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCCCCcEeHHHhcC
Confidence            468899999999999999999999999887 4556688999999999999999999999974

>d1avsa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.14  E-value=8.4e-11  Score=83.87  Aligned_cols=65  Identities=22%  Similarity=0.260  Sum_probs=59.0

Q ss_pred             HHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       334 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      ++++++|+.||.|++|.|+.+||..++... +....+.++..+|..+|.+++|.|+++||..+|..
T Consensus        14 ~el~~~F~~~D~d~~G~I~~~el~~~l~~~-g~~~s~~e~~~~~~~~D~d~~g~I~~~eF~~~m~~   78 (81)
T d1avsa_          14 AEFKAAFDMFDADGGGDISTKELGTVMRML-GQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVR   78 (81)
T ss_dssp             HHHHHHHHHHCTTCSSEECHHHHHHHHHHT-TCCCCHHHHHHHHHHHCTTCCSSEEHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCeEchhHHHHHHHHc-CCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHHH
Confidence            457889999999999999999999999987 55666889999999999999999999999999864

>d1topa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.11  E-value=7.1e-11  Score=96.97  Aligned_cols=102  Identities=22%  Similarity=0.249  Sum_probs=85.5

Q ss_pred             HHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhC----CCCCHHHH
Q psy2947         334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWG----EGLSSKEV  409 (441)
Q Consensus       334 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~----~~l~~~~~  409 (441)
                      .+++++|+.+|.|++|.|+.+||..++... ........+..++..+|.+++|.+++.||...+....    .....+.+
T Consensus        20 ~el~~~F~~~D~d~~G~Is~~el~~~l~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~   98 (162)
T d1topa_          20 AEFKAAFDMFDADGGGDISTKELGTVMRML-GQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEEL   98 (162)
T ss_dssp             HHHHHHHHTTTCSCSSEEEGGGHHHHHHHT-TCCCCHHHHHHHHHHHCTTSCCEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCeEcHHHHHHHHhcc-CCchhHHHHHhhhheeccCCCCCeeeehhhhhhhhhhhhhcccCcHHHH
Confidence            457889999999999999999999988876 4455578999999999999999999999977765321    11345667


Q ss_pred             HHHHHHhCCCCCCceeHHHHHHHHhcc
Q psy2947         410 DQIFREANVTMNSKVRYEDFVKIACAP  436 (441)
Q Consensus       410 ~~l~~~~d~d~dg~i~~~ef~~~l~~~  436 (441)
                      ..+|+.+|.|++|.|+.+||..++.+.
T Consensus        99 ~~aF~~~D~d~~G~Is~~e~~~~l~~~  125 (162)
T d1topa_          99 ANCFRIFDKNADGFIDIEELGEILRAT  125 (162)
T ss_dssp             HHHHHHHCTTCSSCBCHHHHHHHHHTT
T ss_pred             HHHHHHHCCCCCCCCcHHHHHHHHHhh
Confidence            889999999999999999999988654

>d2pq3a1 a.39.1.5 (A:3-75) Calmodulin {Rattus norvegicus [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Rattus norvegicus [TaxId: 10116]

Probab=99.10  E-value=8.1e-11  Score=82.20  Aligned_cols=65  Identities=18%  Similarity=0.276  Sum_probs=58.6

Q ss_pred             HHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       334 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      .+++.+|+.||.|++|.|+..||..++... +...+++.+..+|+.+|.+++|.|+++||..+|..
T Consensus         8 ~el~~~F~~~D~d~~G~I~~~el~~~l~~~-g~~~s~~~~~~~~~~~D~d~~g~I~f~eF~~~m~~   72 (73)
T d2pq3a1           8 AEFKEAFSLFDKDGDGTITTKELGTVMRSL-GQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR   72 (73)
T ss_dssp             HHHHHHHHHTCTTSSSEEEGGGHHHHHHHT-TCCCCHHHHHHHHHHHCTTCSSEEEHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCceEeHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHhc
Confidence            457889999999999999999999999987 45566889999999999999999999999998853

>d1cb1a_ a.39.1.1 (A:) Calbindin D9K {Pig (Sus scrofa) [TaxId: 9823]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calbindin D9K
domain: Calbindin D9K
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.10  E-value=3.2e-11  Score=85.25  Aligned_cols=66  Identities=17%  Similarity=0.304  Sum_probs=52.3

Q ss_pred             hHHHHHHHHHhCC-C-CCCcccHHHHHHHHHHh--CCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         370 PKEVVDAFKAADT-T-KSGTVPAKYLKHVLVNW--GEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       370 ~~~~~~~f~~~D~-~-~~G~is~~ef~~~l~~~--~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      .++++.+|+.||. + +.|+|+.+||+++++..  +...++++++.+++.+|.|+||.|+|+||+.+|.+
T Consensus         6 ~~~l~~~F~~y~~~d~~~g~is~~Elk~ll~~~~~~~~~~~~~v~~~~~~~D~d~dG~Idf~EF~~l~~~   75 (78)
T d1cb1a_           6 PAELKSIFEKYAAKEGDPNQLSKEELKQLIQAEFPSLLKGPRTLDDLFQELDKNGDGEVSFEEFQVLVKK   75 (78)
T ss_dssp             HHHHHHHHHHHHTTSSSTTEECHHHHHHHHHHHCSSCCSSCCCSSHHHHHTCCCSSSSEEHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCCCCCCEECHHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHH
Confidence            5678888888864 3 35889999999999886  34456667888999999999999999999888754

>d2mysb_ a.39.1.5 (B:) Myosin Essential Chain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Essential Chain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.10  E-value=7.7e-11  Score=94.81  Aligned_cols=88  Identities=22%  Similarity=0.321  Sum_probs=78.3

Q ss_pred             CCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccH
Q psy2947         311 GGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPA  390 (441)
Q Consensus       311 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~  390 (441)
                      +|.|++++|..++..........+.+..+|+.+|.+++|.|+.+||++++... +...+.+++..+|+.+|.|++|.|++
T Consensus        54 ~g~i~~~eF~~~~~~~~~~~~~~~~l~~aF~~fD~~~~g~I~~~el~~~l~~~-g~~ls~~e~~~~~~~~d~d~dg~I~y  132 (145)
T d2mysb_          54 SGPINFTVFLTMFGEKLKGADPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTG-GGRFTPEEIKNMWAAFPPDVAGNVDY  132 (145)
T ss_pred             cCceeechhhhhhhhcccccchHHHHHHHHHhhhhcccchhhHHHHHHHHHHc-CCCCCHHHHHHHHHHhCCCCCCeEeH
Confidence            36899999999888776666667889999999999999999999999999877 45667889999999999999999999


Q ss_pred             HHHHHHHHH
Q psy2947         391 KYLKHVLVN  399 (441)
Q Consensus       391 ~ef~~~l~~  399 (441)
                      .||.++|..
T Consensus       133 ~eF~~~l~~  141 (145)
T d2mysb_         133 KNICYVITH  141 (145)
T ss_pred             HHHHHHhcc
Confidence            999999964

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.10  E-value=2.2e-10  Score=107.53  Aligned_cols=166  Identities=17%  Similarity=0.125  Sum_probs=121.0

Q ss_pred             CCCCCcccEEeccCCCcCc--ccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEE
Q psy2947          57 PQYFSHAFLLSLSYTPIGR--RIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHL  134 (441)
Q Consensus        57 ~~~l~~L~~l~l~~n~i~~--~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L  134 (441)
                      ...++++..+++++|.+..  .....++|+.|++++|+++.+| .+..+++|+.|++++|.++  .++ .+..+++|++|
T Consensus       193 ~~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~--~~~-~~~~~~~L~~L  268 (384)
T d2omza2         193 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQIS--NLA-PLSGLTKLTEL  268 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCC--CCG-GGTTCTTCSEE
T ss_pred             cccccccceeeccCCccCCCCcccccCCCCEEECCCCCCCCcc-hhhcccccchhccccCccC--CCC-cccccccCCEe
Confidence            3457888999999985542  2456788999999999999875 5788899999999999998  555 37888999999


Q ss_pred             EccCCCCCccchhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-HhhcccccCCchhhhhhhhcccc
Q psy2947         135 YLDNNLLDALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQKKLHQPSRLQDLAVQSVIA  213 (441)
Q Consensus       135 ~l~~n~l~~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~~~~~~p~~l~~l~~l~~l~  213 (441)
                      ++++|++..++. +..++.++.+.++.|.+....           .+..++.+..+ +.+|.+..++ .+..+++|+.|+
T Consensus       269 ~l~~~~l~~~~~-~~~~~~l~~l~~~~n~l~~~~-----------~~~~~~~l~~L~ls~n~l~~l~-~l~~l~~L~~L~  335 (384)
T d2omza2         269 KLGANQISNISP-LAGLTALTNLELNENQLEDIS-----------PISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLF  335 (384)
T ss_dssp             ECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCG-----------GGGGCTTCSEEECCSSCCSCCG-GGGGCTTCCEEE
T ss_pred             eccCcccCCCCc-ccccccccccccccccccccc-----------ccchhcccCeEECCCCCCCCCc-ccccCCCCCEEE
Confidence            999999988864 667888999999999863322           23334444444 6677777776 488899999999


Q ss_pred             cccccCCCCCCCchhhhHHHhhhcCCccc
Q psy2947         214 SKENFFEPGLFPGPLVDYIAREYNQYHVC  242 (441)
Q Consensus       214 l~~n~~~~~~~p~~~~~~l~~~~~~~~~~  242 (441)
                      +++|.+..  +| .+..........+..+
T Consensus       336 L~~n~l~~--l~-~l~~l~~L~~L~l~~N  361 (384)
T d2omza2         336 FANNKVSD--VS-SLANLTNINWLSAGHN  361 (384)
T ss_dssp             CCSSCCCC--CG-GGGGCTTCCEEECCSS
T ss_pred             CCCCCCCC--Ch-hHcCCCCCCEEECCCC
Confidence            99997753  44 3443333333444444

>d1ggwa_ a.39.1.5 (A:) Cdc4p {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Cdc4p
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.09  E-value=1.9e-10  Score=91.85  Aligned_cols=96  Identities=11%  Similarity=0.104  Sum_probs=80.1

Q ss_pred             HHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhC---CCCCHHHHH
Q psy2947         334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWG---EGLSSKEVD  410 (441)
Q Consensus       334 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~---~~l~~~~~~  410 (441)
                      ...+++|..||.|++|.|+.+||..+++.+. .....+++.    .++.+++|.|+++||.+++....   .+-..+++.
T Consensus         5 ~~fke~F~~~D~d~dG~I~~~el~~~l~~lg-~~~t~~ei~----~~~~~~~~~i~~~eF~~~~~~~~~~~~~~~~~~l~   79 (140)
T d1ggwa_           5 SPYKQAFSLFDRHGTGRIPKTSIGDLLRACG-QNPTLAEIT----EIESTLPAEVDMEQFLQVLNRPNGFDMPGDPEEFV   79 (140)
T ss_dssp             TTTHHHHHHTCSSSSSEECHHHHHHHHHHTS-CCCCHHHHH----HHHTTSCSSEEHHHHHHHHCTTSSSSSSCCHHHHH
T ss_pred             HHHHHHHHHHCCCCCCeECHHHHHHHHHHHH-hhhHHHhhh----hhhccccccccchhhhhhhhhhhhcchhhHHHHHH
Confidence            4578999999999999999999999998874 444455544    45788999999999999997532   234678899


Q ss_pred             HHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         411 QIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       411 ~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      .+|+.+|.+++|.|+.+||.++|.
T Consensus        80 ~aF~~~D~d~~G~I~~~el~~~l~  103 (140)
T d1ggwa_          80 KGFQVFDKDATGMIGVGELRYVLT  103 (140)
T ss_dssp             HHHHTTCSSCSSCCCHHHHHHHHH
T ss_pred             HHHHHHhccCCCcchHHHHHHHHH
Confidence            999999999999999999999885

>d1zfsa1 a.39.1.2 (A:1-93) Calcyclin (S100) {Rat (Rattus norvegicus), s100a1 [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Rat (Rattus norvegicus), s100a1 [TaxId: 10116]

Probab=99.08  E-value=1.1e-10  Score=85.66  Aligned_cols=65  Identities=22%  Similarity=0.333  Sum_probs=52.6

Q ss_pred             HHHHHHHHHh-CCCCC-CcccHHHHHHHHHHhC-----CCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         371 KEVVDAFKAA-DTTKS-GTVPAKYLKHVLVNWG-----EGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       371 ~~~~~~f~~~-D~~~~-G~is~~ef~~~l~~~~-----~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      +.+..+|+.| |.||+ |+|+.+||+++|+..+     .+.++++++.+++.+|.|+||.|+|+||+.+|.+
T Consensus         9 ~~l~~~F~~y~d~dg~~G~is~~El~~~L~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~Idf~EF~~lm~~   80 (93)
T d1zfsa1           9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKIMKELDENGDGEVDFQEFVVLVAA   80 (93)
T ss_dssp             HHHHHHHHHHGGGSSCCSSEEHHHHHHHHHHHSTTTSCCSSCHHHHHHHHHHHTTTCCSEECSHHHHHHHHH
T ss_pred             HHHHHHHHHHcccCCCCCEecHHHHHHHHHHhcccccccCCCHHHHHHHHHHHcCCCCCCCcHHHHHHHHHH
Confidence            4566778777 77875 8999999999998764     3467888999999999999999999999887743

>d1c07a_ a.39.1.6 (A:) Eps15 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Eps15
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=8.9e-11  Score=86.51  Aligned_cols=61  Identities=16%  Similarity=0.248  Sum_probs=45.4

Q ss_pred             HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy2947         371 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA  433 (441)
Q Consensus       371 ~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l  433 (441)
                      ..++.+|+.+|+|++|.|+.+|++.+++..+  ++.++++.++..+|.|+||.|+++||+.+|
T Consensus        10 ~~~~~~F~~~D~d~~G~is~~e~~~~l~~~~--l~~~~l~~i~~~~D~d~dG~l~~~EF~~am   70 (95)
T d1c07a_          10 AKYDEIFLKTDKDMDGFVSGLEVREIFLKTG--LPSTLLAHIWSLCDTKDCGKLSKDQFALAF   70 (95)
T ss_dssp             HHHHHHHHHHCTTCSSEECHHHHHHHHHTTT--CCHHHHHHHHHHHCTTCSSSEETTTHHHHH
T ss_pred             HHHHHHHHHHCCCCCCCCcHHHHHHHHHhcC--CCHHHHHHHHHHhCCCCCCeEcHHHHHHHH
Confidence            3556777777777777777777777777665  677777777777777777777777777554

>d1wrka1 a.39.1.5 (A:4-85) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Human (Homo sapiens), cardiac isoform [TaxId: 9606]

Probab=99.07  E-value=3e-10  Score=80.95  Aligned_cols=65  Identities=25%  Similarity=0.288  Sum_probs=58.4

Q ss_pred             HHHHHHHHhhcCCC-CCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         334 KEVVDAFKAADTTK-SGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       334 ~~~~~~f~~~D~d~-~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      ++++.+|+.||.++ +|.|+..|++.++..+ +....+++++.+|+.+|.|++|.|+++||..+|..
T Consensus        15 ~~~~~~F~~fD~d~~~G~I~~~el~~~l~~l-g~~~t~~el~~~i~~~D~d~~G~I~f~eFl~im~~   80 (82)
T d1wrka1          15 NEFKAAFDIFVLGAEDGSISTKELGKVMRML-GQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVR   80 (82)
T ss_dssp             HHHHHHHHHHTTTCTTSSBCHHHHHHHHHHT-TCCCCHHHHHHHHHTTCTTCCSSBCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCcCCCCeEeHHHHHHHHHHc-CCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHHh
Confidence            46788999999996 7999999999999887 45566889999999999999999999999999864

>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.07  E-value=1.7e-10  Score=81.50  Aligned_cols=64  Identities=19%  Similarity=0.236  Sum_probs=58.0

Q ss_pred             HHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy2947         334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLV  398 (441)
Q Consensus       334 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~  398 (441)
                      .+++++|+.||.|++|+|+..|+..++... +.....+++..+|+.+|.+++|.|+++||..+|.
T Consensus        10 ~el~~~F~~~D~d~~G~I~~~el~~~l~~~-g~~~t~~e~~~~~~~~D~~~~g~I~~~eF~~~m~   73 (77)
T d1f54a_          10 AEFKEAFALFDKDNNGSISSSELATVMRSL-GLSPSEAEVNDLMNEIDVDGNHQIEFSEFLALMS   73 (77)
T ss_dssp             HHHHHHHHHTCTTCSSEEEHHHHHHHHHHH-TCCCCHHHHHHHHHTTCCSSCCEEEHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCCCCeEChHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHH
Confidence            457889999999999999999999999887 4556688999999999999999999999999884

>d3c1va1 a.39.1.2 (A:2-94) Calcyclin (S100) {Human (Homo sapiens), s100a4 [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), s100a4 [TaxId: 9606]

Probab=99.07  E-value=2.7e-10  Score=83.11  Aligned_cols=65  Identities=11%  Similarity=0.268  Sum_probs=47.0

Q ss_pred             HHHHHHHHHh-CCCCCC-cccHHHHHHHHHH-----hCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         371 KEVVDAFKAA-DTTKSG-TVPAKYLKHVLVN-----WGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       371 ~~~~~~f~~~-D~~~~G-~is~~ef~~~l~~-----~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      +.+..+|+.| |.+|+| +|+.+||+++|+.     .+...++++++.+++.+|.|+||.|+|+||+.+|.+
T Consensus         9 ~~l~~~F~~ya~~dg~~~~L~~~Elk~~l~~~~~~~~~~~~~~~~~~~i~~~~D~n~DG~I~F~EF~~lm~~   80 (93)
T d3c1va1           9 DVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSC   80 (93)
T ss_dssp             HHHHHHHHHHHTSSSSTTEECHHHHHHHHHHHCHHHHTTCCSHHHHHHHHHHHCTTCSSSEEHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCCCCeeCHHHHHHHHHHhchhccccCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Confidence            3556677776 566544 5888888888876     345667788888888888888888888888777643

>d1snla_ a.39.1.7 (A:) Nucleobindin 1 (CALNUC) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: Nucleobindin 1 (CALNUC)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=1.3e-10  Score=86.56  Aligned_cols=64  Identities=13%  Similarity=0.170  Sum_probs=44.8

Q ss_pred             HHHHHHHhCCCCCCcccHHHHHHHHHHhCCC----------------CCHHHHHHHHHHhCCCCCCceeHHHHHHHHhcc
Q psy2947         373 VVDAFKAADTTKSGTVPAKYLKHVLVNWGEG----------------LSSKEVDQIFREANVTMNSKVRYEDFVKIACAP  436 (441)
Q Consensus       373 ~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~----------------l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~~  436 (441)
                      ++.+|+.+|.|++|+|+.+||+.+++..+..                ...+.++.+|+.+|.|+||.||++||++++.+.
T Consensus        18 ~r~~F~~~D~DgdG~i~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~D~d~DG~Is~~EF~~~~~~~   97 (99)
T d1snla_          18 PKTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVMKNVDTNQDRLVTLEEFLASTQRK   97 (99)
T ss_dssp             HHHHHHHHCSSCCSEEEHHHHHHHHHHHHHTTSCCSSCSSHHHHTTHHHHHHHHHHHHHTCSSCSSEEEHHHHHHHHHCC
T ss_pred             HHHHHHHHCCCCCCcCCHHHHHHHHHHHHHhcchhhhhhhhhhhhHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHhcC
Confidence            4556666666666666666666666543210                113457789999999999999999999998764

>d1s6ia_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD {Soybean (Glycine max) [TaxId: 3847]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-dependent protein kinase sk5 CLD
species: Soybean (Glycine max) [TaxId: 3847]

Probab=99.06  E-value=1.3e-10  Score=97.23  Aligned_cols=100  Identities=19%  Similarity=0.234  Sum_probs=87.6

Q ss_pred             HHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHH
Q psy2947         334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIF  413 (441)
Q Consensus       334 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~  413 (441)
                      ..++++|+.+|.|++|.|+.+||..++..+ ........++.+|+.+|.+++|.|++++|..++.........+.+..+|
T Consensus        10 ~~l~~~F~~~D~d~dG~Is~~e~~~~l~~l-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~e~l~~aF   88 (182)
T d1s6ia_          10 GGLKELFKMIDTDNSGTITFDELKDGLKRV-GSELMESEIKDLMDAADIDKSGTIDYGEFIAATVHLNKLEREENLVSAF   88 (182)
T ss_dssp             CSHHHHHHTTSSSSSSCEEHHHHHHHHTTT-TCCCCHHHHHHHHHHTCTTCSSEECHHHHHHHHTTSSSSCCCCSTHHHH
T ss_pred             HHHHHHHHHHcCCCcCCCCHHHHHHHHHHc-CCccccccchhhhhhhhccccccchHHHHHHHHHhhcccccHHHHHHHH
Confidence            458899999999999999999999999887 4455678899999999999999999999999887654445556788999


Q ss_pred             HHhCCCCCCceeHHHHHHHHh
Q psy2947         414 REANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       414 ~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      ..+|.+++|.|+.+++.+++.
T Consensus        89 ~~~D~d~~G~i~~~el~~~l~  109 (182)
T d1s6ia_          89 SYFDKDGSGYITLDEIQQACK  109 (182)
T ss_dssp             HHTTTTCSSEEEHHHHHHTTT
T ss_pred             HHHhhcCCCccchhhhhhhhh
Confidence            999999999999999988774

>d1fi6a_ a.39.1.6 (A:) Reps1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Reps1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.03  E-value=2.9e-10  Score=83.14  Aligned_cols=61  Identities=16%  Similarity=0.301  Sum_probs=50.7

Q ss_pred             HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy2947         371 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA  433 (441)
Q Consensus       371 ~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l  433 (441)
                      ..++.+|+.+|++++|+|+.+|++.+++..+  ++.+++..++..+|.|++|.|+++||+.+|
T Consensus         9 ~~y~~~F~~~D~d~~G~i~~~e~~~~l~~~~--l~~~~l~~i~~~~D~d~dG~l~~~EF~~a~   69 (92)
T d1fi6a_           9 QYYVNQFKTIQPDLNGFIPGSAAKEFFTKSK--LPILELSHIWELSDFDKDGALTLDEFCAAF   69 (92)
T ss_dssp             HHHHHHHTTTCCSTTCEEEHHHHHHHHHHHS--SCHHHHHHHHHHHCTTCSSEEEHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcccchhHHHHHHHHHHcc--CCHHHHHHHHHHhCCCCCCeecHHHHHHHH
Confidence            3566788888888888888888888888876  778888888888888888888888887544

>d1yuta1 a.39.1.2 (A:1-98) Calcyclin (S100) {Human (Homo sapiens), s100a13 [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), s100a13 [TaxId: 9606]

Probab=99.02  E-value=2.1e-10  Score=84.64  Aligned_cols=64  Identities=11%  Similarity=0.223  Sum_probs=49.3

Q ss_pred             HHHHHHHHh-CCCCC-CcccHHHHHHHHHHhCC--CCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         372 EVVDAFKAA-DTTKS-GTVPAKYLKHVLVNWGE--GLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       372 ~~~~~f~~~-D~~~~-G~is~~ef~~~l~~~~~--~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      .+..+|+.| |.+|+ |+|+.+||+++|+..+.  ..+++.++.+++.+|.|+||.|+|+||+.+|.+
T Consensus        15 ~l~~vF~~y~d~dg~~g~is~~El~~~l~~~~~~~~~~~~~v~~l~~~~D~d~DG~IdF~EF~~l~~~   82 (98)
T d1yuta1          15 TVVTTFFTFARQEGRKDSLSVNEFKELVTQQLPHLLKDVGSLDEKMKSLDVNQDSELKFNEYWRLIGE   82 (98)
T ss_dssp             HHHHHHHHHHTTSSSSSCBCHHHHHHHHHHHCTTTTCCSSCHHHHHHHHCTTCCSCBCHHHHHHHHHH
T ss_pred             HHHHHHHHHcccCCCCCEEcHHHHHHHHHHhccccCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence            456677776 67774 88999999888887643  345666888888999888999999999888753

>d1a4pa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), P11 s100a10, calpactin [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), P11 s100a10, calpactin [TaxId: 9606]

Probab=99.02  E-value=1e-10  Score=85.21  Aligned_cols=60  Identities=15%  Similarity=0.278  Sum_probs=29.5

Q ss_pred             HHHHHHHhCCCCCCcccHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy2947         373 VVDAFKAADTTKSGTVPAKYLKHVLVNW-----GEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA  433 (441)
Q Consensus       373 ~~~~f~~~D~~~~G~is~~ef~~~l~~~-----~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l  433 (441)
                      +..+|+.||.+ +|.|+.+||++++...     +...++..++.+++.+|.|+||+|+|+||+.+|
T Consensus        11 l~~~F~~yd~d-dG~is~~El~~~l~~~~~~~~~~~~~~~~v~~~~~~~D~n~DG~I~F~EF~~li   75 (92)
T d1a4pa_          11 MMFTFHKFAGD-KGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVGFQSFFSLI   75 (92)
T ss_dssp             HHHHHHHHHGG-GCSBCHHHHHHHHHHHCHHHHHHSCCTTHHHHHHHHHCTTSSSCBCHHHHHHHH
T ss_pred             HHHHHHHHcCC-CCEEcHHHHHHHHHHhccccccccCCHHHHHHHHHHHhCCCCCCCcHHHHHHHH
Confidence            44445555543 4555555555555432     122334445555555555555555555555544

>d1s6ja_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD {Soybean (Glycine max) [TaxId: 3847]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-dependent protein kinase sk5 CLD
species: Soybean (Glycine max) [TaxId: 3847]

Probab=99.01  E-value=7.5e-11  Score=85.32  Aligned_cols=63  Identities=27%  Similarity=0.355  Sum_probs=56.6

Q ss_pred             HHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy2947         334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVL  397 (441)
Q Consensus       334 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l  397 (441)
                      ..++.+|+.+|.|++|.|+.+||+.+++.+ +....+++++.+|+.+|.|++|.|+++||..+|
T Consensus        23 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l-g~~~s~~e~~~l~~~~D~d~~g~I~~~EFl~am   85 (87)
T d1s6ja_          23 GGLKELFKMIDTDNSGTITFDELKDGLKRV-GSELMESEIKDLMDAADIDKSGTIDYGEFIAAT   85 (87)
T ss_dssp             TTTTTHHHHHCTTCSSCEEHHHHHHHHHTT-TSSCCHHHHHHHHHHHCTTCSSEECHHHHTTCC
T ss_pred             HHHHHHHHHHcCCCCCcCcHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCCCCeEeHHHHHHHH
Confidence            458899999999999999999999999987 455667899999999999999999999998654

>d1ksoa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a3 [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), s100a3 [TaxId: 9606]

Probab=99.01  E-value=3.4e-10  Score=82.30  Aligned_cols=63  Identities=11%  Similarity=0.190  Sum_probs=48.8

Q ss_pred             HHHHHHHHh-CCCCCC-cccHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         372 EVVDAFKAA-DTTKSG-TVPAKYLKHVLVNW-----GEGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       372 ~~~~~f~~~-D~~~~G-~is~~ef~~~l~~~-----~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      .+..+|+.| |++|+| +|+.+||+++|+..     +...++..++.+++.+|.|+||.|+|+||+.+|.
T Consensus        10 ~i~~vF~kya~~dGd~~~ls~~Elk~ll~~~~~~~~~~~~~~~~~~~~~~~lD~n~Dg~IdF~EF~~l~~   79 (93)
T d1ksoa_          10 AIVCTFQEYAGRCGDKYKLCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCEVDFVEYVRSLA   79 (93)
T ss_dssp             HHHHHHHHHHTSSSCTTCEEHHHHHHHHHHHTTTCCCCTTCHHHHHHHHHHHHHTTTCEECHHHHHHHHH
T ss_pred             HHHHHHHHHcCcCCCCCeECHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHcCCCCCCCcHHHHHHHHH
Confidence            455677766 888888 58888888888774     2345678888888888888888888888887774

>d1qx2a_ a.39.1.1 (A:) Calbindin D9K {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calbindin D9K
domain: Calbindin D9K
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.00  E-value=3.4e-10  Score=79.61  Aligned_cols=70  Identities=16%  Similarity=0.198  Sum_probs=57.9

Q ss_pred             CCHHHHHHHHHhhcCC--CCCcccHHHHHHHHHhhccCC-CChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         331 DIPKEVVDAFKAADTT--KSGKLSFPDFLKVMHTHSKAE-DIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       331 ~~~~~~~~~f~~~D~d--~~g~i~~~ef~~~~~~~~~~~-~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      .+.++++.+|+.||.+  ++|+|+.+|++.++..+.... ....++..+|+.+|.|++|.|+++||.++|..+
T Consensus         2 ~s~eel~~~F~~fd~~~~~~G~I~~~El~~~l~~lg~~~~~~~~ei~~~~~~~D~d~dG~I~f~EF~~~m~~~   74 (76)
T d1qx2a_           2 KSPEEIKGAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVSFEEFLVMMKKI   74 (76)
T ss_dssp             CCHHHHHHHHHHHHTSSSCTTSEEHHHHHHHHHHHGGGSCTTSCSHHHHHHHHCTTCSSEECHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHcccCCCCCEECHHHHHHHHHHhCCcCCCCHHHHHHHHHHhhcCCCCcCcHHHHHHHHHHH
Confidence            3568899999999765  469999999999998864322 223468999999999999999999999999764

>d1w7jb1 a.39.1.5 (B:11-149) Myosin Essential Chain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Essential Chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=2.1e-10  Score=91.44  Aligned_cols=99  Identities=18%  Similarity=0.175  Sum_probs=81.5

Q ss_pred             HHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCC--CCCCcccHHHHHHHHHHhCCC---CCHHHHH
Q psy2947         336 VVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADT--TKSGTVPAKYLKHVLVNWGEG---LSSKEVD  410 (441)
Q Consensus       336 ~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~--~~~G~is~~ef~~~l~~~~~~---l~~~~~~  410 (441)
                      ++++|+.+|.+++|.|+.+|+..+++.+ +...+..++..++..++.  +++|.|+++||..++......   ...+++.
T Consensus         2 ~ke~F~~~D~d~~G~I~~~el~~~l~~l-g~~~t~~e~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~l~   80 (139)
T d1w7jb1           2 FKEAFELFDRVGDGKILYSQCGDVMRAL-GQNPTNAEVLKVLGNPKSDELKSRRVDFETFLPMLQAVAKNRGQGTYEDYL   80 (139)
T ss_dssp             HHHHHHHHCCSSSSEEESTTHHHHHHHT-TCCCCHHHHHHHTTCCCHHHHTTCEEEHHHHHHHHHHHCC--------CCH
T ss_pred             HHHHHHHHhCCCCCeECHHHHHHHHHHh-ccCCCHHHHHHHHHHHhcccccCCceeeeccchhhHhhhhhccccHHHHHH
Confidence            6789999999999999999999999887 445667888888887764  679999999999999875422   2345578


Q ss_pred             HHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         411 QIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       411 ~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      .+|+.+|.+++|.|+.+||.+++..
T Consensus        81 ~aF~~~D~d~~G~I~~~el~~~l~~  105 (139)
T d1w7jb1          81 EGFRVFDKEGNGKVMGAELRHVLTT  105 (139)
T ss_dssp             HHHHTTCTTSSSEEEHHHHHHHHHH
T ss_pred             HhhhhccCCCCCeEeHHHHHHHHHH
Confidence            8999999999999999999998854

>d1k8ua_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a6 [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), s100a6 [TaxId: 9606]

Probab=98.97  E-value=2.7e-10  Score=82.10  Aligned_cols=64  Identities=19%  Similarity=0.356  Sum_probs=52.7

Q ss_pred             HHHHHHHHh-CCCCCC-cccHHHHHHHHHH---hCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         372 EVVDAFKAA-DTTKSG-TVPAKYLKHVLVN---WGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       372 ~~~~~f~~~-D~~~~G-~is~~ef~~~l~~---~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      .+..+|+.| |++|+| +|+..||+.+++.   .+...+++.++.+++.+|.|+||+|+|+||+.+|.+
T Consensus        10 ~ii~vF~kya~~dg~~~~ls~~Elk~Ll~~e~~~~~~~~~~~~~~~~~~lD~d~Dg~IdF~EF~~l~~~   78 (89)
T d1k8ua_          10 LLVAIFHKYSGREGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDLDRNKDQEVNFQEYVTFLGA   78 (89)
T ss_dssp             HHHHHHHHHHTSSSCTTEEEHHHHHHHHHHHSCCGGGTTSHHHHHHHHHHHHTTTCEEEHHHHHHHHHH
T ss_pred             HHHHHHHHHcccCCCCCeecHHHHHHHHHHHHHhhccCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Confidence            456678777 888888 6999999999987   455567788999999999999999999999988754

>d1xk4a1 a.39.1.2 (A:1-87) Calcyclin (S100) {Human (Homo sapiens), calgranulin s100a8, MRP8 [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), calgranulin s100a8, MRP8 [TaxId: 9606]

Probab=98.92  E-value=2.9e-10  Score=81.74  Aligned_cols=65  Identities=17%  Similarity=0.282  Sum_probs=51.5

Q ss_pred             HHHHHHHHHh-CCCCCCc-ccHHHHHHHHHH-hCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         371 KEVVDAFKAA-DTTKSGT-VPAKYLKHVLVN-WGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       371 ~~~~~~f~~~-D~~~~G~-is~~ef~~~l~~-~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      +.+..+|+.| |++|+|. ++.+||++++.. ++..+++++++++++.+|.|+||+|+|+||+.+|.+
T Consensus        10 ~~ii~~F~kya~~dG~~~~l~~~Elk~ll~~e~~~~~~~~~v~~i~~~~D~n~DG~IdF~EF~~l~~~   77 (87)
T d1xk4a1          10 NSIIDVYHKYSLIKGNFHAVYRDDLKKLLETESPQYIRKKGADVWFKELDINTDGAVNFQEFLILVIK   77 (87)
T ss_dssp             HHHHHHHHHHHTSSSCTTCBCHHHHHHHHHHHSCHHHHTTCHHHHHHHHCTTCSSSBCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccCCCCCccCHHHHHHHHHHhcCCccchHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence            3456677776 8888885 488999998875 565566677888999999999999999999988754

>d1ij5a_ a.39.1.9 (A:) Cbp40 (plasmodial specific CaII-binding protein LAV1-2) {Physarum polycephalum [TaxId: 5791]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Cbp40 (plasmodial specific CaII-binding protein LAV1-2)
domain: Cbp40 (plasmodial specific CaII-binding protein LAV1-2)
species: Physarum polycephalum [TaxId: 5791]

Probab=98.91  E-value=1.2e-09  Score=99.91  Aligned_cols=119  Identities=19%  Similarity=0.305  Sum_probs=94.8

Q ss_pred             HhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCc
Q psy2947         308 AEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGT  387 (441)
Q Consensus       308 ~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~  387 (441)
                      .+++|.|+++||..++..... ..+.+++..+|+.+|.|++|.|++.||...+...       ..+...|+.+|.+++|.
T Consensus       133 ~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~-------~~~~~~F~~~d~d~~~~  204 (321)
T d1ij5a_         133 VSGSGKFSFQDLKQVLAKYAD-TIPEGPLKKLFVMVENDTKGRMSYITLVAVANDL-------AALVADFRKIDTNSNGT  204 (321)
T ss_dssp             STTSSCCCHHHHHHHHHHHHT-TSCSSHHHHHHHHHHHCCSSTHHHHHHTTSHHHH-------HTSCCCHHHHCTTCCSE
T ss_pred             CCCCCeEcHHHHHHHHHHcCC-cccHHHHHHHHHHHhhcCCccccchhhhhhhhhh-------hhhhHHHHHHhhccccc
Confidence            478999999999999987643 4566789999999999999999999998877654       22335788999999999


Q ss_pred             ccHHHHHHHHHHhCCCCCHH-----------------------------HHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         388 VPAKYLKHVLVNWGEGLSSK-----------------------------EVDQIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       388 is~~ef~~~l~~~~~~l~~~-----------------------------~~~~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      ++..++...+...+......                             .+..+|..+|.|++|.|+.+||.+++.
T Consensus       205 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~F~~~D~d~~G~Is~~E~~~~l~  280 (321)
T d1ij5a_         205 LSRKEFREHFVRLGFDKKSVQDALFRYADEDESDDVGFSEYVHLGLCLLVLRILYAFADFDKSGQLSKEEVQKVLE  280 (321)
T ss_dssp             ECHHHHHHHHHHTTCCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHHHHHHHHTCSSSCSSEEHHHHHHHHH
T ss_pred             chhHHHhhhhhcccccchHHHHHHHHhhhcccccccccccccchhhhhhHHHHHHHHHhcCCCCCCcHHHHHHHHH
Confidence            99999999888766442211                             122368888999999999999998874

>d2sasa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Sarcoplasmic calcium-binding protein
species: Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]

Probab=98.90  E-value=1.3e-09  Score=91.28  Aligned_cols=89  Identities=12%  Similarity=0.154  Sum_probs=73.6

Q ss_pred             HhCCCcccHHHHHHHHHhhcCC--------CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHH
Q psy2947         308 AEKGGKLSFPDFLKVMHTHSKA--------EDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKA  379 (441)
Q Consensus       308 ~~~~g~i~~~ef~~~~~~~~~~--------~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~  379 (441)
                      .+++|.|++++|..++......        ......+..+|+.+|.|++|.|+.+||+.++....   ...++++.+|+.
T Consensus        71 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~E~~~~l~~~~---l~~~~~~~~f~~  147 (185)
T d2sasa_          71 INKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQNYCKNFQ---LQCADVPAVYNV  147 (185)
T ss_dssp             TTCSSCEEHHHHHHHHHHHHHTCCSGGGSCTTHHHHHHHHHHHHCTTSSSCCCHHHHHHHTTSSC---CCCSSHHHHHHH
T ss_pred             cCCCCcEeeeHhhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHccCCCccCCHHHHHHHHHHcC---CCHHHHHHHHHH
Confidence            4678999999999888654322        12245688999999999999999999999987653   345678999999


Q ss_pred             hCCCCCCcccHHHHHHHHHH
Q psy2947         380 ADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       380 ~D~~~~G~is~~ef~~~l~~  399 (441)
                      +|.|++|.|+++||.+++..
T Consensus       148 ~D~d~dG~i~~~EF~~~~~~  167 (185)
T d2sasa_         148 ITDGGKVTFDLNRYKELYYR  167 (185)
T ss_dssp             HHTTTTSCCSHHHHHHHHHH
T ss_pred             cCCCCCCCCcHHHHHHHHHH
Confidence            99999999999999999876

>d1wlza1 a.39.1.7 (A:229-311) DJ-1-binding protein, DJBP {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: DJ-1-binding protein, DJBP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=2.4e-09  Score=76.71  Aligned_cols=64  Identities=11%  Similarity=0.131  Sum_probs=58.1

Q ss_pred             HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy2947         333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVL  397 (441)
Q Consensus       333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l  397 (441)
                      ...+.++|+.+|.+++|.|+.+||++++... ....+++++..+|+.+|.+++|.|++.||.+.+
T Consensus        19 ~~~l~~~F~~~D~~~~G~i~~~ef~~~l~~~-~~~l~~~e~~~l~~~~d~~~~g~I~y~eFl~~f   82 (83)
T d1wlza1          19 YHAITQEFENFDTMKTNTISREEFRAICNRR-VQILTDEQFDRLWNEMPVNAKGRLKYPDFLSRF   82 (83)
T ss_dssp             HHHHHHHHHHHCTTCSSCBCHHHHHHHHHHH-TCCCCHHHHHHHHTTSCBCTTSCBCHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCceEChhHHHHHHHHh-CCCCChhHHHHHhhccccCCCCcEeHHHHHHHh
Confidence            4568899999999999999999999999987 456778999999999999999999999998875

>d1qjta_ a.39.1.6 (A:) Eps15 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Eps15
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.89  E-value=1.1e-09  Score=81.05  Aligned_cols=60  Identities=15%  Similarity=0.172  Sum_probs=45.2

Q ss_pred             HHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy2947         372 EVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA  433 (441)
Q Consensus       372 ~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l  433 (441)
                      ..+.+|+.+|++++|+|+.+|++++++..|  ++++++..+++.+|.|++|.|+++||+.+|
T Consensus        12 ~y~~~F~~~D~d~~G~i~~~e~~~~l~~s~--L~~~~L~~i~~~~D~d~dG~L~~~EF~~am   71 (99)
T d1qjta_          12 VYEKYYRQVEAGNTGRVLALDAAAFLKKSG--LPDLILGKIWDLADTDGKGVLSKQEFFVAL   71 (99)
T ss_dssp             HHHHHHHHHCCTTSSCCCSHHHHHHHHTSS--SCHHHHHHHHHHHCCSSSSSCCSHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCcccHHHHHHHHHHcC--CcHHHHHHHHHHHcCCCCCccCHHHHHHHH
Confidence            455677777777777777777777777655  677777777777777777777777777665

>d1snla_ a.39.1.7 (A:) Nucleobindin 1 (CALNUC) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: Nucleobindin 1 (CALNUC)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=1e-09  Score=81.52  Aligned_cols=65  Identities=12%  Similarity=0.094  Sum_probs=52.9

Q ss_pred             HHHHHHHhhcCCCCCcccHHHHHHHHHhhcc----CC-----------CChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         335 EVVDAFKAADTTKSGKLSFPDFLKVMHTHSK----AE-----------DIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       335 ~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~----~~-----------~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      .++.+|+.||.|++|+|+.+||.+++.....    ..           .....++.+|+.+|.|+||.||++||.+++++
T Consensus        17 ~~r~~F~~~D~DgdG~i~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~D~d~DG~Is~~EF~~~~~~   96 (99)
T d1snla_          17 NPKTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVMKNVDTNQDRLVTLEEFLASTQR   96 (99)
T ss_dssp             CHHHHHHHHCSSCCSEEEHHHHHHHHHHHHHTTSCCSSCSSHHHHTTHHHHHHHHHHHHHTCSSCSSEEEHHHHHHHHHC
T ss_pred             CHHHHHHHHCCCCCCcCCHHHHHHHHHHHHHhcchhhhhhhhhhhhHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHhc
Confidence            4788999999999999999999998865321    00           01235788999999999999999999998864

>d1nyaa_ a.39.1.5 (A:) Calerythrin {Saccharopolyspora erythraea [TaxId: 1836]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calerythrin
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=98.87  E-value=3.4e-09  Score=87.65  Aligned_cols=90  Identities=17%  Similarity=0.240  Sum_probs=75.0

Q ss_pred             HhCCCcccHHHHHHHHHhhcCCCCC-------HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHh
Q psy2947         308 AEKGGKLSFPDFLKVMHTHSKAEDI-------PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAA  380 (441)
Q Consensus       308 ~~~~g~i~~~ef~~~~~~~~~~~~~-------~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~  380 (441)
                      .+++|.+++.++...+.........       ...++.+|+.+|.|++|.|+.+||++++....   ...++++.+|+.+
T Consensus        69 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~Is~~E~~~~~~~~~---~~~~~~~~~f~~~  145 (176)
T d1nyaa_          69 VGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADEFAAWLTALG---MSKAEAAEAFNQV  145 (176)
T ss_dssp             SCTTCCBCHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTCSSCCSEEEHHHHHHHHHHTT---CCHHHHHHHHHHH
T ss_pred             CCCCCcccHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHccCCChhhhHHHHHHHHHhcC---CcHHHHHHHHHHH
Confidence            4678899999998887765443221       24678899999999999999999999988762   3578899999999


Q ss_pred             CCCCCCcccHHHHHHHHHHh
Q psy2947         381 DTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       381 D~~~~G~is~~ef~~~l~~~  400 (441)
                      |.|++|.|+++||.++++..
T Consensus       146 D~d~dG~i~~~Ef~~~~~~~  165 (176)
T d1nyaa_         146 DTNGNGELSLDELLTAVRDF  165 (176)
T ss_dssp             CTTCSSEEEHHHHHHHHSCC
T ss_pred             CCCCCCcEeHHHHHHHHHHH
Confidence            99999999999999999764

>d1zfsa1 a.39.1.2 (A:1-93) Calcyclin (S100) {Rat (Rattus norvegicus), s100a1 [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Rat (Rattus norvegicus), s100a1 [TaxId: 10116]

Probab=98.87  E-value=3e-09  Score=77.74  Aligned_cols=67  Identities=16%  Similarity=0.214  Sum_probs=57.0

Q ss_pred             HHHHHHHHhh-cCCCC-CcccHHHHHHHHHhhcc----CCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         334 KEVVDAFKAA-DTTKS-GKLSFPDFLKVMHTHSK----AEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       334 ~~~~~~f~~~-D~d~~-g~i~~~ef~~~~~~~~~----~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      +.+.++|+.| |.||+ |+|+.+||++++.....    ....++.++.+|+.+|.|+||.|+++||..+|..+
T Consensus         9 ~~l~~~F~~y~d~dg~~G~is~~El~~~L~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~Idf~EF~~lm~~l   81 (93)
T d1zfsa1           9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL   81 (93)
T ss_dssp             HHHHHHHHHHGGGSSCCSSEEHHHHHHHHHHHSTTTSCCSSCHHHHHHHHHHHTTTCCSEECSHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccCCCCCEecHHHHHHHHHHhcccccccCCCHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHH
Confidence            5678889887 88875 99999999999987532    34457889999999999999999999999999764

>d1qv0a_ a.39.1.5 (A:) Calcium-regulated photoprotein {Hydrozoa (Obelia longissima), obelin [TaxId: 32570]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-regulated photoprotein
species: Hydrozoa (Obelia longissima), obelin [TaxId: 32570]

Probab=98.86  E-value=3.6e-09  Score=88.80  Aligned_cols=91  Identities=15%  Similarity=0.266  Sum_probs=66.8

Q ss_pred             hCCCcccHHHHHHHHHhhc--------CC--CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHH
Q psy2947         309 EKGGKLSFPDFLKVMHTHS--------KA--EDIPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFK  378 (441)
Q Consensus       309 ~~~g~i~~~ef~~~~~~~~--------~~--~~~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~  378 (441)
                      ...+.+++++|..++....        ..  ......+..+|+.+|.|++|.|+.+||.+++... .....+++++.+|+
T Consensus        72 ~~~~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~is~~E~~~~l~~~-g~~~~~~~~~~lf~  150 (189)
T d1qv0a_          72 EYGKEIAFPQFLDGWKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGSGTITLDEWKAYGKIS-GISPSQEDCEATFR  150 (189)
T ss_dssp             CTTCCBCHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTC----CEECHHHHHHHHHHH-SSCCCHHHHHHHHH
T ss_pred             cCCCceehHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHccCCCCcccchhhHHHHHhc-CCCCCHHHHHHHHH
Confidence            3456677777766654321        11  1123456778999999999999999999999877 44566789999999


Q ss_pred             HhCCCCCCcccHHHHHHHHHHh
Q psy2947         379 AADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       379 ~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      .+|.|+||.|+++||.+++...
T Consensus       151 ~~D~d~dG~Is~~EF~~~~~~~  172 (189)
T d1qv0a_         151 HCDLDNAGDLDVDEMTRQHLGF  172 (189)
T ss_dssp             HSCCCTTSCEEHHHHHHHHHHH
T ss_pred             HhCCCCCCcEeHHHHHHHHHHh
Confidence            9999999999999999998764

>d1e8aa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), calgranulin C, s100a12 [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), calgranulin C, s100a12 [TaxId: 9606]

Probab=98.86  E-value=5.3e-09  Score=74.60  Aligned_cols=65  Identities=17%  Similarity=0.298  Sum_probs=51.3

Q ss_pred             HHHHHHHHHh-CCCCCC-cccHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         371 KEVVDAFKAA-DTTKSG-TVPAKYLKHVLVNW-----GEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       371 ~~~~~~f~~~-D~~~~G-~is~~ef~~~l~~~-----~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      +.+..+|+.| +.+|++ +|+.+||+++|+..     +...+++.++.+++.+|.|+||.|+|+||+.++.+
T Consensus         8 ~~li~vF~kya~~~g~~~~Lsk~Elk~ll~~e~~~~~~~~~~~~~v~~~~~~lD~n~Dg~idF~EF~~li~~   79 (87)
T d1e8aa_           8 EGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAI   79 (87)
T ss_dssp             HHHHHHHHHHHTSSSSTTEECHHHHHHHHHHHSTTTSTTTTSHHHHHHHHHHHCTTCSSCEEHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccCCCCCeEcHHHHHHHHHHHccccccCCCCHHHHHHHHHHHcCCCCCcCCHHHHHHHHHH
Confidence            3456778776 566654 69999999999873     33456788999999999999999999999988764

>d2jxca1 a.39.1.6 (A:121-215) Eps15 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Eps15
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=2.4e-09  Score=78.45  Aligned_cols=60  Identities=13%  Similarity=0.252  Sum_probs=46.6

Q ss_pred             HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy2947         371 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA  433 (441)
Q Consensus       371 ~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l  433 (441)
                      ..++.+|+.+| +++|+|+.+|++.++...|  ++.++++.|+..+|.|++|.|+++||+.+|
T Consensus        10 ~~y~~~F~~~D-~~~G~i~~~el~~~l~~~g--l~~~~L~~Iw~~~D~~~dG~l~~~EF~~a~   69 (95)
T d2jxca1          10 AKYDAIFDSLS-PVNGFLSGDKVKPVLLNSK--LPVDILGRVWELSDIDHDGMLDRDEFAVAM   69 (95)
T ss_dssp             HHHHHHHHHTC-CBTTEEEHHHHHHHHTTSS--CCHHHHHHHHHHHCTTCSSEEEHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCCCceeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCeEcHHHHHHHH
Confidence            35667888888 7788888888888887666  677888888888888888888888886544

>d2zkmx1 a.39.1.7 (X:142-311) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=2.2e-09  Score=88.26  Aligned_cols=121  Identities=9%  Similarity=0.135  Sum_probs=76.4

Q ss_pred             ccccCCCccCHHHHHHHHHHcCCCcC--HHHHHHHH----HhCCCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCC
Q psy2947         274 LFARNGTIKTLDELSVIMRSLGMSPT--IAELKKYL----AEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK  347 (441)
Q Consensus       274 ~~d~~G~i~~~~el~~~~~~~~~~~~--~~~~~~~~----~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~d~  347 (441)
                      -.+.+|.| +..++..+++..+....  ...+..++    .+++|.|+|+||..++.....    ..++..+|+.+|.|+
T Consensus        17 d~n~dG~I-s~~el~k~l~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~F~eF~~~~~~l~~----r~ei~~~F~~~d~d~   91 (170)
T d2zkmx1          17 QLNSEGKI-PVKNFFQMFPADRKRVEAALSACHLPKGKNDAINPEDFPEPVYKSFLMSLCP----RPEIDEIFTSYHAKA   91 (170)
T ss_dssp             SCCTTSCE-EHHHHHHHSCSCHHHHHHHHHHTTCCCCTTCEECGGGCCHHHHHHHHHHHSC----CHHHHTTCC------
T ss_pred             ccCCCCCC-cHHHHHHHHHHhhhhHHHHHHHHhhhhccccccCCCccCHHHHHHHHhccCC----HHHHHHHHHHHcCCC
Confidence            34456999 79999888865431111  01111111    247899999999999987743    478999999999999


Q ss_pred             CCcccHHHHHHHHHhhccCC---------CChHHHHHHHHHhCCCCC----CcccHHHHHHHHHH
Q psy2947         348 SGKLSFPDFLKVMHTHSKAE---------DIPKEVVDAFKAADTTKS----GTVPAKYLKHVLVN  399 (441)
Q Consensus       348 ~g~i~~~ef~~~~~~~~~~~---------~~~~~~~~~f~~~D~~~~----G~is~~ef~~~l~~  399 (441)
                      +|.|+.+||..++...+...         ...+.++.++..++.+.+    |.|+.++|..+|..
T Consensus        92 ~~~it~~el~~fL~~~Q~~~~~~e~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~d~F~~fL~S  156 (170)
T d2zkmx1          92 KPYMTKEHLTKFINQKQRDSRLNSLLFPPARPDQVQGLIDKYEPSGINAQRGQLSPEGMVWFLCG  156 (170)
T ss_dssp             --CCCHHHHHHHHHHTCC---------------CHHHHHHHHCCC--------CCHHHHHHHHHS
T ss_pred             CCcccHHHHHHHHHHHhcchhhhhhccccCCHHHHHHHHHHHccccccccCCeECHHHHHHHHcC
Confidence            99999999999998775442         234567888888877654    89999999998864

>d3c1va1 a.39.1.2 (A:2-94) Calcyclin (S100) {Human (Homo sapiens), s100a4 [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), s100a4 [TaxId: 9606]

Probab=98.84  E-value=6.1e-09  Score=75.75  Aligned_cols=67  Identities=10%  Similarity=0.081  Sum_probs=56.3

Q ss_pred             HHHHHHHHhh-cCCCCC-cccHHHHHHHHHhh----ccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         334 KEVVDAFKAA-DTTKSG-KLSFPDFLKVMHTH----SKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       334 ~~~~~~f~~~-D~d~~g-~i~~~ef~~~~~~~----~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      +.+..+|+.| |.||+| +|+++||++++...    ......++.++.+|+.+|.|+||.|+++||..+|..+
T Consensus         9 ~~l~~~F~~ya~~dg~~~~L~~~Elk~~l~~~~~~~~~~~~~~~~~~~i~~~~D~n~DG~I~F~EF~~lm~~l   81 (93)
T d3c1va1           9 DVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCI   81 (93)
T ss_dssp             HHHHHHHHHHHTSSSSTTEECHHHHHHHHHHHCHHHHTTCCSHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCCCCeeCHHHHHHHHHHhchhccccCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Confidence            5678899988 667655 69999999999763    2345567899999999999999999999999999775

>d1c07a_ a.39.1.6 (A:) Eps15 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Eps15
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=2.9e-09  Score=78.16  Aligned_cols=62  Identities=11%  Similarity=0.119  Sum_probs=55.3

Q ss_pred             HHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy2947         334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLV  398 (441)
Q Consensus       334 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~  398 (441)
                      ..++++|+.+|.|++|.|+.+|++.++...   ....+.+..+|+.+|.|++|.|+++||..+|+
T Consensus        10 ~~~~~~F~~~D~d~~G~is~~e~~~~l~~~---~l~~~~l~~i~~~~D~d~dG~l~~~EF~~am~   71 (95)
T d1c07a_          10 AKYDEIFLKTDKDMDGFVSGLEVREIFLKT---GLPSTLLAHIWSLCDTKDCGKLSKDQFALAFH   71 (95)
T ss_dssp             HHHHHHHHHHCTTCSSEECHHHHHHHHHTT---TCCHHHHHHHHHHHCTTCSSSEETTTHHHHHH
T ss_pred             HHHHHHHHHHCCCCCCCCcHHHHHHHHHhc---CCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHH
Confidence            467889999999999999999999998764   34578899999999999999999999998875

>d1cb1a_ a.39.1.1 (A:) Calbindin D9K {Pig (Sus scrofa) [TaxId: 9823]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calbindin D9K
domain: Calbindin D9K
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.82  E-value=2.4e-09  Score=75.27  Aligned_cols=70  Identities=16%  Similarity=0.265  Sum_probs=57.8

Q ss_pred             CCHHHHHHHHHhhcC-C-CCCcccHHHHHHHHHhhccC-CCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         331 DIPKEVVDAFKAADT-T-KSGKLSFPDFLKVMHTHSKA-EDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       331 ~~~~~~~~~f~~~D~-d-~~g~i~~~ef~~~~~~~~~~-~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      ...++++.+|+.||. + ++|+|+.+||+.++...... ....+.++.+|+.+|.|+||.|+++||..+|..+
T Consensus         4 ~~~~~l~~~F~~y~~~d~~~g~is~~Elk~ll~~~~~~~~~~~~~v~~~~~~~D~d~dG~Idf~EF~~l~~~l   76 (78)
T d1cb1a_           4 KSPAELKSIFEKYAAKEGDPNQLSKEELKQLIQAEFPSLLKGPRTLDDLFQELDKNGDGEVSFEEFQVLVKKI   76 (78)
T ss_dssp             CCHHHHHHHHHHHHTTSSSTTEECHHHHHHHHHHHCSSCCSSCCCSSHHHHHTCCCSSSSEEHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHccCCCCCCEECHHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHH
Confidence            457889999999975 3 45899999999999876432 2334568899999999999999999999999765

>d1a4pa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), P11 s100a10, calpactin [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), P11 s100a10, calpactin [TaxId: 9606]

Probab=98.82  E-value=2.5e-09  Score=77.66  Aligned_cols=66  Identities=17%  Similarity=0.212  Sum_probs=55.6

Q ss_pred             HHHHHHHHhhcCCCCCcccHHHHHHHHHhhc----cCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTHS----KAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       334 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~----~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      +.+..+|+.||.| +|.|+.+||.+++....    ........++.+|+.+|.|+||.|+++||..++..+
T Consensus         9 e~l~~~F~~yd~d-dG~is~~El~~~l~~~~~~~~~~~~~~~~v~~~~~~~D~n~DG~I~F~EF~~li~~l   78 (92)
T d1a4pa_           9 ETMMFTFHKFAGD-KGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVGFQSFFSLIAGL   78 (92)
T ss_dssp             HHHHHHHHHHHGG-GCSBCHHHHHHHHHHHCHHHHHHSCCTTHHHHHHHHHCTTSSSCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCC-CCEEcHHHHHHHHHHhccccccccCCHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHH
Confidence            5688999999987 89999999999987532    223345689999999999999999999999998764

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.79  E-value=1.1e-08  Score=94.21  Aligned_cols=97  Identities=27%  Similarity=0.208  Sum_probs=77.1

Q ss_pred             CcccEEeccCCCcCcccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEEEccCCC
Q psy2947          61 SHAFLLSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHLYLDNNL  140 (441)
Q Consensus        61 ~~L~~l~l~~n~i~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~  140 (441)
                      .+++.|+|+++.+..-...+++|++|+|++|+|+.+|..   +.+|+.|++++|+++  .++. +  .+.|++|++++|.
T Consensus        38 ~~l~~LdLs~~~L~~lp~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~l~--~l~~-l--p~~L~~L~L~~n~  109 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPELPPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLK--ALSD-L--PPLLEYLGVSNNQ  109 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSCCTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCS--CCCS-C--CTTCCEEECCSSC
T ss_pred             cCCCEEEeCCCCCCCCCCCCCCCCEEECCCCCCcccccc---hhhhhhhhhhhcccc--hhhh-h--ccccccccccccc
Confidence            467899999995432212357899999999999999875   457899999999998  6663 2  2469999999999


Q ss_pred             CCccchhhcCCCCCCEEEccCCcCcc
Q psy2947         141 LDALPGFLLSMPQLDTVYRHGNHNYF  166 (441)
Q Consensus       141 l~~lp~~~~~l~~L~~L~l~~N~~~~  166 (441)
                      +..+|. ++.+++|+.|++++|.+..
T Consensus       110 l~~lp~-~~~l~~L~~L~l~~~~~~~  134 (353)
T d1jl5a_         110 LEKLPE-LQNSSFLKIIDVDNNSLKK  134 (353)
T ss_dssp             CSSCCC-CTTCTTCCEEECCSSCCSC
T ss_pred             cccccc-hhhhccceeeccccccccc
Confidence            999985 5788999999999998643

>d1iq3a_ a.39.1.6 (A:) Pob1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Pob1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=1.8e-09  Score=81.40  Aligned_cols=61  Identities=15%  Similarity=0.237  Sum_probs=39.1

Q ss_pred             HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy2947         371 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA  433 (441)
Q Consensus       371 ~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l  433 (441)
                      +.++.+|+.+|++++|+|+.+|++.++.+.|  ++.++++.+++.+|.|++|.|+++||+.+|
T Consensus        22 ~~y~~lF~~~D~d~~G~Is~~e~~~~l~~s~--L~~~~L~~Iw~l~D~d~dG~l~~~EF~~am   82 (110)
T d1iq3a_          22 EYYVNQFRSLQPDPSSFISGSVAKNFFTKSK--LSIPELSYIWELSDADCDGALTLPEFCAAF   82 (110)
T ss_dssp             HHHHHHHHHHCCSSSSEEEHHHHHHHCCSSS--CSSCCHHHHHHHHCSSSCSEEEHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcccchhHHHHHHHHHhhc--cchHHHHHHHHHhccCCCCeECHHHHHHHH
Confidence            4555666666666666666666666665544  555566666666666666666666666544

>d1psra_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), psoriasin s100a7 [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), psoriasin s100a7 [TaxId: 9606]

Probab=98.77  E-value=1.9e-09  Score=79.90  Aligned_cols=62  Identities=10%  Similarity=0.251  Sum_probs=43.3

Q ss_pred             HHHHHHHhCCCCCCcccHHHHHHHHHHhCC-------CCCHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q psy2947         373 VVDAFKAADTTKSGTVPAKYLKHVLVNWGE-------GLSSKEVDQIFREANVTMNSKVRYEDFVKIACA  435 (441)
Q Consensus       373 ~~~~f~~~D~~~~G~is~~ef~~~l~~~~~-------~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~~  435 (441)
                      +..+|+.|| +++|.|+.+||+.+|+....       +.+++.++.+|+.+|.|+||.|+|+||+.+|.+
T Consensus        12 l~~~F~~y~-~~dG~i~~~El~~ll~~~~~~~~~~~~~~~~~~v~~~~~~~D~n~DG~I~F~EF~~li~~   80 (100)
T d1psra_          12 MIDMFHKYT-RRDDKIDKPSLLTMMKENFPNFLSACDKKGTNYLADVFEKKDKNEDKKIDFSEFLSLLGD   80 (100)
T ss_dssp             HHHHHHHTC-CTTSCBCHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHCTTCSSCBCHHHHHHHHHH
T ss_pred             HHHHHHHHc-CCCCcccHHHHHHHHHHHccccccccccCCHHHHHHHHHHhcCCCCCcCcHHHHHHHHHH
Confidence            345566665 67788888888888876432       123445777888888888888888888877744

>d1ksoa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a3 [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), s100a3 [TaxId: 9606]

Probab=98.76  E-value=9.1e-09  Score=74.58  Aligned_cols=67  Identities=15%  Similarity=0.086  Sum_probs=56.9

Q ss_pred             HHHHHHHHhh-cCCCCC-cccHHHHHHHHHhhc----cCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         334 KEVVDAFKAA-DTTKSG-KLSFPDFLKVMHTHS----KAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       334 ~~~~~~f~~~-D~d~~g-~i~~~ef~~~~~~~~----~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      +.+..+|+.| |.+|+| +|+.+||++++....    ........++.+++.+|.|+||.|+++||..+|..+
T Consensus         9 ~~i~~vF~kya~~dGd~~~ls~~Elk~ll~~~~~~~~~~~~~~~~~~~~~~~lD~n~Dg~IdF~EF~~l~~~l   81 (93)
T d1ksoa_           9 AAIVCTFQEYAGRCGDKYKLCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCEVDFVEYVRSLACL   81 (93)
T ss_dssp             HHHHHHHHHHHTSSSCTTCEEHHHHHHHHHHHTTTCCCCTTCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCcCCCCCeECHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHH
Confidence            4577889887 999999 599999999998653    233456789999999999999999999999999775

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=4.1e-09  Score=92.14  Aligned_cols=102  Identities=11%  Similarity=0.087  Sum_probs=82.1

Q ss_pred             cEEeccCC---CcCcccCCCCCCCEEEccCCCCCcCCcC-ccCCCCCcEEEccCCcCCCCCCch-hhhcCCCCCEEEcc-
Q psy2947          64 FLLSLSYT---PIGRRIFKCDTVEVLSLKSNSLTSLPPD-IGRLTNLRVLCLTDNCLQNASIPF-TLTFCKNLTHLYLD-  137 (441)
Q Consensus        64 ~~l~l~~n---~i~~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~p~-~~~~l~~L~~L~l~-  137 (441)
                      +.++.++.   .+|+.+.  +++++|+|++|+|+.+|.. |.++++|++|++++|.+. ..+|. .+..+++++++.+. 
T Consensus        11 ~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~-~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL-EVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTC-CEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhcccccc-ceeeccccccccccccccccc
Confidence            45566554   6776654  5899999999999999886 899999999999999987 34544 56889999999876 


Q ss_pred             CCCCCccc-hhhcCCCCCCEEEccCCcCccCc
Q psy2947         138 NNLLDALP-GFLLSMPQLDTVYRHGNHNYFKS  168 (441)
Q Consensus       138 ~n~l~~lp-~~~~~l~~L~~L~l~~N~~~~~~  168 (441)
                      .|++..++ ..|.++++|+.|++++|.+....
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~  119 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLP  119 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCSCC
T ss_pred             cccccccccccccccccccccccchhhhcccc
Confidence            46787665 67889999999999999875544

>d1fi6a_ a.39.1.6 (A:) Reps1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Reps1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.75  E-value=1.1e-08  Score=74.60  Aligned_cols=62  Identities=13%  Similarity=0.111  Sum_probs=54.9

Q ss_pred             HHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy2947         334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLV  398 (441)
Q Consensus       334 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~  398 (441)
                      +.++.+|+.+|.|++|.|+.+|++.++....   ...+.+..+|+.+|.|++|.|+++||..+|+
T Consensus         9 ~~y~~~F~~~D~d~~G~i~~~e~~~~l~~~~---l~~~~l~~i~~~~D~d~dG~l~~~EF~~a~~   70 (92)
T d1fi6a_           9 QYYVNQFKTIQPDLNGFIPGSAAKEFFTKSK---LPILELSHIWELSDFDKDGALTLDEFCAAFH   70 (92)
T ss_dssp             HHHHHHHTTTCCSTTCEEEHHHHHHHHHHHS---SCHHHHHHHHHHHCTTCSSEEEHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcccchhHHHHHHHHHHcc---CCHHHHHHHHHHhCCCCCCeecHHHHHHHHH
Confidence            4567899999999999999999999998752   4568899999999999999999999987775

>d1yuta1 a.39.1.2 (A:1-98) Calcyclin (S100) {Human (Homo sapiens), s100a13 [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), s100a13 [TaxId: 9606]

Probab=98.75  E-value=1.2e-08  Score=75.03  Aligned_cols=67  Identities=12%  Similarity=0.123  Sum_probs=55.2

Q ss_pred             HHHHHHHHhh-cCCCC-CcccHHHHHHHHHhhccC-CCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         334 KEVVDAFKAA-DTTKS-GKLSFPDFLKVMHTHSKA-EDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       334 ~~~~~~f~~~-D~d~~-g~i~~~ef~~~~~~~~~~-~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      +.+..+|+.| |.||+ |+|+..||++++...... ....+.++.+|+.+|.|+||.|+++||..++..+
T Consensus        14 ~~l~~vF~~y~d~dg~~g~is~~El~~~l~~~~~~~~~~~~~v~~l~~~~D~d~DG~IdF~EF~~l~~~l   83 (98)
T d1yuta1          14 ETVVTTFFTFARQEGRKDSLSVNEFKELVTQQLPHLLKDVGSLDEKMKSLDVNQDSELKFNEYWRLIGEL   83 (98)
T ss_dssp             HHHHHHHHHHHTTSSSSSCBCHHHHHHHHHHHCTTTTCCSSCHHHHHHHHCTTCCSCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccCCCCCEEcHHHHHHHHHHhccccCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence            4577888887 77875 999999999999876432 2334568999999999999999999999999764

>d1uhka1 a.39.1.5 (A:3-189) Calcium-regulated photoprotein {Jellyfish (Aequorea aequorea), aequorin [TaxId: 168712]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-regulated photoprotein
species: Jellyfish (Aequorea aequorea), aequorin [TaxId: 168712]

Probab=98.74  E-value=2.1e-08  Score=83.83  Aligned_cols=65  Identities=11%  Similarity=0.215  Sum_probs=58.3

Q ss_pred             HHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       334 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      ..+..+|+.+|.|++|.|+.+||++++..+. .....+++..+|+.+|.|++|.|+++||.+++..
T Consensus       105 ~~~~~~F~~~D~d~~G~Is~~El~~~l~~~g-~~~~~~~~~~lf~~~D~d~dG~Is~~EF~~~~~~  169 (187)
T d1uhka1         105 IWGDALFDIVDKDQNGAITLDEWKAYTKAAG-IIQSSEDCEETFRVCDIDESGQLDVDEMTRQHLG  169 (187)
T ss_dssp             HHHHHHHHHHCTTCSSEECHHHHHHHHHHHT-SCCSHHHHHHHHHHSCCCTTSCEEHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcccchHHHHHHHHHhC-CCccHHHHHHHHHHhCCCCCCCEeHHHHHHHHHH
Confidence            4578899999999999999999999998773 4456789999999999999999999999998876

>d1xk4a1 a.39.1.2 (A:1-87) Calcyclin (S100) {Human (Homo sapiens), calgranulin s100a8, MRP8 [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), calgranulin s100a8, MRP8 [TaxId: 9606]

Probab=98.67  E-value=1.2e-08  Score=73.11  Aligned_cols=67  Identities=16%  Similarity=0.122  Sum_probs=55.2

Q ss_pred             HHHHHHHHhh-cCCCCCcc-cHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         334 KEVVDAFKAA-DTTKSGKL-SFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       334 ~~~~~~f~~~-D~d~~g~i-~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      +.+..+|+.| |.||+|.+ +.+||++++..........+.++++++..|.|+||.|+++||..++..+
T Consensus        10 ~~ii~~F~kya~~dG~~~~l~~~Elk~ll~~e~~~~~~~~~v~~i~~~~D~n~DG~IdF~EF~~l~~~l   78 (87)
T d1xk4a1          10 NSIIDVYHKYSLIKGNFHAVYRDDLKKLLETESPQYIRKKGADVWFKELDINTDGAVNFQEFLILVIKM   78 (87)
T ss_dssp             HHHHHHHHHHHTSSSCTTCBCHHHHHHHHHHHSCHHHHTTCHHHHHHHHCTTCSSSBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccCCCCCccCHHHHHHHHHHhcCCccchHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence            4577888888 89999865 9999999997654433334578999999999999999999999999764

>d1qjta_ a.39.1.6 (A:) Eps15 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Eps15
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.64  E-value=2.5e-08  Score=73.54  Aligned_cols=62  Identities=11%  Similarity=0.090  Sum_probs=55.6

Q ss_pred             HHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy2947         334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLV  398 (441)
Q Consensus       334 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~  398 (441)
                      .....+|+.+|.|++|+|+.+|+++++...   ....+++..+|+.+|.|++|.|+++||..+|+
T Consensus        11 ~~y~~~F~~~D~d~~G~i~~~e~~~~l~~s---~L~~~~L~~i~~~~D~d~dG~L~~~EF~~am~   72 (99)
T d1qjta_          11 PVYEKYYRQVEAGNTGRVLALDAAAFLKKS---GLPDLILGKIWDLADTDGKGVLSKQEFFVALR   72 (99)
T ss_dssp             THHHHHHHHHCCTTSSCCCSHHHHHHHHTS---SSCHHHHHHHHHHHCCSSSSSCCSHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCCcccHHHHHHHHHHc---CCcHHHHHHHHHHHcCCCCCccCHHHHHHHHH
Confidence            457789999999999999999999998754   34578999999999999999999999999886

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.61  E-value=1.4e-07  Score=86.66  Aligned_cols=85  Identities=25%  Similarity=0.248  Sum_probs=67.8

Q ss_pred             CCCCCCCcccEEeccCCCcCcccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCchhhhcCCCCCEE
Q psy2947          55 WIPQYFSHAFLLSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIPFTLTFCKNLTHL  134 (441)
Q Consensus        55 ~~~~~l~~L~~l~l~~n~i~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L  134 (441)
                      .+|..+++|+.|++++|.|..-...+.+|+.|++++|+++.++.-   .+.|++|++++|.+.  .+|. ++.+++|++|
T Consensus        52 ~lp~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~n~l~--~lp~-~~~l~~L~~L  125 (353)
T d1jl5a_          52 SLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLE--KLPE-LQNSSFLKII  125 (353)
T ss_dssp             CCCSCCTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCS--SCCC-CTTCTTCCEE
T ss_pred             CCCCCCCCCCEEECCCCCCcccccchhhhhhhhhhhcccchhhhh---ccccccccccccccc--cccc-hhhhccceee
Confidence            456667899999999996543223356899999999999987642   256999999999998  7885 6889999999


Q ss_pred             EccCCCCCccc
Q psy2947         135 YLDNNLLDALP  145 (441)
Q Consensus       135 ~l~~n~l~~lp  145 (441)
                      ++++|.+...|
T Consensus       126 ~l~~~~~~~~~  136 (353)
T d1jl5a_         126 DVDNNSLKKLP  136 (353)
T ss_dssp             ECCSSCCSCCC
T ss_pred             ccccccccccc
Confidence            99999887655

>d2hf5a1 a.39.1.5 (A:81-113) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Human (Homo sapiens), cardiac isoform [TaxId: 9606]

Probab=98.60  E-value=1.1e-08  Score=57.28  Aligned_cols=32  Identities=34%  Similarity=0.612  Sum_probs=25.2

Q ss_pred             hHHHHHHHHHhCCCCCCcccHHHHHHHHHHhC
Q psy2947         370 PKEVVDAFKAADTTKSGTVPAKYLKHVLVNWG  401 (441)
Q Consensus       370 ~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~  401 (441)
                      +++++++|+.||+|++|+|+..|++.+|+.+|
T Consensus         2 eeel~eAF~~FDkDg~G~Is~~EL~~vm~~lG   33 (33)
T d2hf5a1           2 EEEIREAFRVFDKDGNGYISAAELRHVMTNLG   33 (33)
T ss_dssp             HHHHHHHHHHHSSSCCSCBCHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcC
Confidence            46778888888888888888888888876554

>d1k8ua_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a6 [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), s100a6 [TaxId: 9606]

Probab=98.60  E-value=3.5e-08  Score=70.75  Aligned_cols=67  Identities=13%  Similarity=0.095  Sum_probs=55.9

Q ss_pred             HHHHHHHHhh-cCCCCC-cccHHHHHHHHHhhc--cCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         334 KEVVDAFKAA-DTTKSG-KLSFPDFLKVMHTHS--KAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       334 ~~~~~~f~~~-D~d~~g-~i~~~ef~~~~~~~~--~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      ..+..+|+.| |+||+| +|+..||++++....  .....++.++.+++.+|.|+||.|+++||..++..+
T Consensus         9 ~~ii~vF~kya~~dg~~~~ls~~Elk~Ll~~e~~~~~~~~~~~~~~~~~~lD~d~Dg~IdF~EF~~l~~~l   79 (89)
T d1k8ua_           9 GLLVAIFHKYSGREGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDLDRNKDQEVNFQEYVTFLGAL   79 (89)
T ss_dssp             HHHHHHHHHHHTSSSCTTEEEHHHHHHHHHHHSCCGGGTTSHHHHHHHHHHHHTTTCEEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccCCCCCeecHHHHHHHHHHHHHhhccCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence            4577889888 999998 699999999998632  223346789999999999999999999999999764

>d2jxca1 a.39.1.6 (A:121-215) Eps15 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Eps15
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=8.2e-08  Score=70.03  Aligned_cols=61  Identities=11%  Similarity=0.083  Sum_probs=53.2

Q ss_pred             HHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy2947         334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLV  398 (441)
Q Consensus       334 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~  398 (441)
                      ..++++|+.+| +++|.|+.+|++.++...   ....++++.+|..+|.|++|.|+++||..+++
T Consensus        10 ~~y~~~F~~~D-~~~G~i~~~el~~~l~~~---gl~~~~L~~Iw~~~D~~~dG~l~~~EF~~a~~   70 (95)
T d2jxca1          10 AKYDAIFDSLS-PVNGFLSGDKVKPVLLNS---KLPVDILGRVWELSDIDHDGMLDRDEFAVAMF   70 (95)
T ss_dssp             HHHHHHHHHTC-CBTTEEEHHHHHHHHTTS---SCCHHHHHHHHHHHCTTCSSEEEHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCCCceeHHHHHHHHHHc---CCCHHHHHHHHHHhcCCCCCeEcHHHHHHHHH
Confidence            45778999999 899999999999988754   34567899999999999999999999987775

>d3cr5x1 a.39.1.2 (X:0-89) Calcyclin (S100) {Cow (Bos taurus), s100b [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Cow (Bos taurus), s100b [TaxId: 9913]

Probab=98.54  E-value=1.8e-07  Score=66.64  Aligned_cols=63  Identities=14%  Similarity=0.287  Sum_probs=45.7

Q ss_pred             HHHHHHHHh-CCCCC-CcccHHHHHHHHHH-----hCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         372 EVVDAFKAA-DTTKS-GTVPAKYLKHVLVN-----WGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       372 ~~~~~f~~~-D~~~~-G~is~~ef~~~l~~-----~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      .+..+|+.| +++|+ ++++..||++++..     ++..-....++.+++.+|.|+||.|+|+||+.++.
T Consensus        10 ~ii~vFhkYa~~~G~~~tLsk~Elk~Ll~~El~~~l~~~~d~~~~d~~m~~LD~n~Dg~vdF~EF~~li~   79 (90)
T d3cr5x1          10 ALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVA   79 (90)
T ss_dssp             HHHHHHHHHHTSSSSTTSBCHHHHHHHHHHHCTTTSCCCCSHHHHHHHHHHHCTTSSSSBCHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCCcCcCCHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHH
Confidence            455677766 45554 46888888888876     23344567788888888888888888888877764

>d1psra_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), psoriasin s100a7 [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), psoriasin s100a7 [TaxId: 9606]

Probab=98.54  E-value=3e-08  Score=73.17  Aligned_cols=66  Identities=15%  Similarity=0.258  Sum_probs=52.7

Q ss_pred             HHHHHHHHhhcCCCCCcccHHHHHHHHHhhcc------CCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         334 KEVVDAFKAADTTKSGKLSFPDFLKVMHTHSK------AEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       334 ~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~------~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      ..+..+|+.|| +++|.|+..||++++.....      .......+..+|+.+|.|+||.|+++||..++..+
T Consensus        10 ~~l~~~F~~y~-~~dG~i~~~El~~ll~~~~~~~~~~~~~~~~~~v~~~~~~~D~n~DG~I~F~EF~~li~~l   81 (100)
T d1psra_          10 IGMIDMFHKYT-RRDDKIDKPSLLTMMKENFPNFLSACDKKGTNYLADVFEKKDKNEDKKIDFSEFLSLLGDI   81 (100)
T ss_dssp             HHHHHHHHHTC-CTTSCBCHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHCTTCSSCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHc-CCCCcccHHHHHHHHHHHccccccccccCCHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHH
Confidence            34667788887 78999999999999986531      11223467889999999999999999999999775

>d1iq3a_ a.39.1.6 (A:) Pob1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Pob1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=4.7e-08  Score=73.40  Aligned_cols=64  Identities=11%  Similarity=0.045  Sum_probs=55.3

Q ss_pred             CHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy2947         332 IPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLV  398 (441)
Q Consensus       332 ~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~  398 (441)
                      ..+.+..+|+.+|.|++|+|+.+|++.++...   ....+.+..+|+.+|.|++|+|+++||..+|+
T Consensus        20 e~~~y~~lF~~~D~d~~G~Is~~e~~~~l~~s---~L~~~~L~~Iw~l~D~d~dG~l~~~EF~~am~   83 (110)
T d1iq3a_          20 QREYYVNQFRSLQPDPSSFISGSVAKNFFTKS---KLSIPELSYIWELSDADCDGALTLPEFCAAFH   83 (110)
T ss_dssp             SHHHHHHHHHHHCCSSSSEEEHHHHHHHCCSS---SCSSCCHHHHHHHHCSSSCSEEEHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcccchhHHHHHHHHHhh---ccchHHHHHHHHHhccCCCCeECHHHHHHHHH
Confidence            35678899999999999999999999987543   24456789999999999999999999998875

>d1e8aa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), calgranulin C, s100a12 [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), calgranulin C, s100a12 [TaxId: 9606]

Probab=98.49  E-value=3.2e-07  Score=65.15  Aligned_cols=67  Identities=12%  Similarity=0.098  Sum_probs=54.4

Q ss_pred             HHHHHHHHhh-cCCCCC-cccHHHHHHHHHhhc----cCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         334 KEVVDAFKAA-DTTKSG-KLSFPDFLKVMHTHS----KAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       334 ~~~~~~f~~~-D~d~~g-~i~~~ef~~~~~~~~----~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      +.+..+|+.| +.+|++ +|+.+||++++....    ......+.++.+++..|.|+||.|+++||..++..+
T Consensus         8 ~~li~vF~kya~~~g~~~~Lsk~Elk~ll~~e~~~~~~~~~~~~~v~~~~~~lD~n~Dg~idF~EF~~li~~l   80 (87)
T d1e8aa_           8 EGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAIA   80 (87)
T ss_dssp             HHHHHHHHHHHTSSSSTTEECHHHHHHHHHHHSTTTSTTTTSHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccCCCCCeEcHHHHHHHHHHHccccccCCCCHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence            4577889888 556554 699999999998643    334456889999999999999999999999998764

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=1.2e-08  Score=91.53  Aligned_cols=103  Identities=17%  Similarity=0.191  Sum_probs=62.4

Q ss_pred             CCcccEEeccCCCcC-----cccCCCCCCCEEEccCCCCC-cCCcCccCCCCCcEEEccCC-cCCCCCCchhhhcCCCCC
Q psy2947          60 FSHAFLLSLSYTPIG-----RRIFKCDTVEVLSLKSNSLT-SLPPDIGRLTNLRVLCLTDN-CLQNASIPFTLTFCKNLT  132 (441)
Q Consensus        60 l~~L~~l~l~~n~i~-----~~~~~l~~L~~L~l~~n~l~-~lp~~~~~l~~L~~L~l~~n-~l~~~~~p~~~~~l~~L~  132 (441)
                      ..+|+.|+++++.+.     ..+..+++|++|+|+++.++ ..+..++.+++|++|+++++ .++...+..-...+++|+
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            456778888877443     33456778888888888776 44555777778888888774 343101222235677788


Q ss_pred             EEEccCC-CCC--ccchhhcC-CCCCCEEEccCC
Q psy2947         133 HLYLDNN-LLD--ALPGFLLS-MPQLDTVYRHGN  162 (441)
Q Consensus       133 ~L~l~~n-~l~--~lp~~~~~-l~~L~~L~l~~N  162 (441)
                      +|+++++ .++  .++..+.. .++|+.|+++++
T Consensus       125 ~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~  158 (284)
T d2astb2         125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY  158 (284)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred             ccccccccccccccchhhhcccccccchhhhccc
Confidence            8888775 343  22222322 356777777654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=5.9e-09  Score=85.05  Aligned_cols=101  Identities=20%  Similarity=0.121  Sum_probs=64.8

Q ss_pred             ccEEeccCCCcCcccCCCCCCCEEEccCCCCCcCCcCccCCCCCcEEEccCCcCCCCCCc---hhhhcCCCCCEEEccCC
Q psy2947          63 AFLLSLSYTPIGRRIFKCDTVEVLSLKSNSLTSLPPDIGRLTNLRVLCLTDNCLQNASIP---FTLTFCKNLTHLYLDNN  139 (441)
Q Consensus        63 L~~l~l~~n~i~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~p---~~~~~l~~L~~L~l~~n  139 (441)
                      .+.|+++.......+..+..+..++...+.+..++..+..+++|++|++++|+|+  .++   ..+..+++|+.|+|++|
T Consensus        24 ~~~Ldls~l~~~~~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~--~l~~~~~~~~~l~~L~~L~Ls~N  101 (162)
T d1koha1          24 QQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLY--RLDDMSSIVQKAPNLKILNLSGN  101 (162)
T ss_dssp             SCCBCCCCCSSCTTTTTTTCCCCTTSHHHHHHHHHHHHHHCTTCCCCCCCSSCCC--CCSGGGTHHHHSTTCCCCCCTTS
T ss_pred             hCeeecccCCCCchhhhccchhhcchhhhHhhhhHHHHHhCCCCCEeeCCCcccc--CCchhHHHHhhCCcccccccccC
Confidence            3445565554444444444444444444444444333456788888888888887  443   34577888888889888


Q ss_pred             CCCccch-hhcCCCCCCEEEccCCcCc
Q psy2947         140 LLDALPG-FLLSMPQLDTVYRHGNHNY  165 (441)
Q Consensus       140 ~l~~lp~-~~~~l~~L~~L~l~~N~~~  165 (441)
                      .|+.++. .......|+.|++++|++.
T Consensus       102 ~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1         102 ELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             CCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             ccccchhhhhhhccccceeecCCCCcC
Confidence            8888873 2334457888888888863

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=9.1e-08  Score=85.53  Aligned_cols=153  Identities=14%  Similarity=0.109  Sum_probs=100.9

Q ss_pred             CCCCCcccEEeccCCCcC----cccCCCCCCCEEEccCC-CCC--cCCcCccCCCCCcEEEccCCc-CCCCCCchhhhc-
Q psy2947          57 PQYFSHAFLLSLSYTPIG----RRIFKCDTVEVLSLKSN-SLT--SLPPDIGRLTNLRVLCLTDNC-LQNASIPFTLTF-  127 (441)
Q Consensus        57 ~~~l~~L~~l~l~~n~i~----~~~~~l~~L~~L~l~~n-~l~--~lp~~~~~l~~L~~L~l~~n~-l~~~~~p~~~~~-  127 (441)
                      ...+++|+.|+++++.+.    ..+..+++|+.|+++++ .++  .+..-...+++|++|+++++. ++...++..+.. 
T Consensus        67 ~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~  146 (284)
T d2astb2          67 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV  146 (284)
T ss_dssp             HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred             HHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhccc
Confidence            345789999999999653    55778899999999985 676  233324568999999999863 431112233433 


Q ss_pred             CCCCCEEEccCC--CCC--ccchhhcCCCCCCEEEccCCcCccCcccccccccccccccccchhHHH-Hhhc-ccc-cCC
Q psy2947         128 CKNLTHLYLDNN--LLD--ALPGFLLSMPQLDTVYRHGNHNYFKSTFMWYHSDIHARIRSTSTRDEV-LRKQ-KKL-HQP  200 (441)
Q Consensus       128 l~~L~~L~l~~n--~l~--~lp~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~~l~~~~~~-l~~~-~~~-~~p  200 (441)
                      .++|+.|+++++  .++  .+...+.++++|++|++++|.....        ..+..+..++.+..+ +.++ .++ ...
T Consensus       147 ~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd--------~~~~~l~~~~~L~~L~L~~C~~i~~~~l  218 (284)
T d2astb2         147 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN--------DCFQEFFQLNYLQHLSLSRCYDIIPETL  218 (284)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG--------GGGGGGGGCTTCCEEECTTCTTCCGGGG
T ss_pred             ccccchhhhcccccccccccccccccccccccccccccccCCCc--------hhhhhhcccCcCCEEECCCCCCCChHHH
Confidence            468999999865  343  3444456789999999998764322        233445555555555 5542 232 223


Q ss_pred             chhhhhhhhcccccccc
Q psy2947         201 SRLQDLAVQSVIASKEN  217 (441)
Q Consensus       201 ~~l~~l~~l~~l~l~~n  217 (441)
                      ..+..+++|+.|++.++
T Consensus       219 ~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         219 LELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGGGGCTTCCEEECTTS
T ss_pred             HHHhcCCCCCEEeeeCC
Confidence            45777888999988876

>d1qlsa_ a.39.1.2 (A:) Calcyclin (S100) {Pig (Sus scrofa), calgizzarin s100c (s100a11) [TaxId: 9823]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Pig (Sus scrofa), calgizzarin s100c (s100a11) [TaxId: 9823]

Probab=98.38  E-value=2.4e-07  Score=66.64  Aligned_cols=62  Identities=5%  Similarity=0.230  Sum_probs=35.6

Q ss_pred             HHHHHHHh-CCCCC-CcccHHHHHHHHHH-----hCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         373 VVDAFKAA-DTTKS-GTVPAKYLKHVLVN-----WGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       373 ~~~~f~~~-D~~~~-G~is~~ef~~~l~~-----~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      +..+|+.| .++|+ ++++..||+.++..     ++..-..+.++.+++.+|.|+||.|+|+||+.++.
T Consensus        11 ii~vFhkYa~~~G~~~tLsk~Elk~Ll~~El~~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~li~   79 (95)
T d1qlsa_          11 LIAIFQKHAGRDGNNTKISKTEFLIFMNTELAAFTQNQKDPGVLDRMMKKLDLDSDGQLDFQEFLNLIG   79 (95)
T ss_dssp             HHHHHHHHHTTSSCTTCBCHHHHHHHHTTTSHHHHHHCCCTHHHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred             HHHHHHHHhCcCCCcCcCCHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCCCCcCcHHHHHHHHH
Confidence            34455544 34443 45666666666653     22333455566667777766677777777666553

>d1j55a_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100p [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), s100p [TaxId: 9606]

Probab=98.27  E-value=9.3e-07  Score=63.39  Aligned_cols=63  Identities=17%  Similarity=0.381  Sum_probs=41.4

Q ss_pred             HHHHHHHHh-CCCCC-CcccHHHHHHHHHH-----hCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         372 EVVDAFKAA-DTTKS-GTVPAKYLKHVLVN-----WGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       372 ~~~~~f~~~-D~~~~-G~is~~ef~~~l~~-----~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      .+..+|+.| ..+|+ ++++..||+.++..     ++.+.+++.++.+++.+|.|+||.|+|+||+.++.
T Consensus        10 ~ii~vFhkYa~~~g~~~tLsk~Elk~Ll~~El~~~l~~~~d~~~vd~~m~~LD~n~Dg~vdF~EF~~li~   79 (94)
T d1j55a_          10 MIIDVFSRYSGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKDLDANGDAQVDFSEFIVFVA   79 (94)
T ss_dssp             HHHHHHHHHTTSSSCTTEECHHHHHHHHHHHSTTCC------CHHHHHHHHHCSSSSSSEEHHHHHHHHH
T ss_pred             HHHHHHHHHcccCCCcccCCHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHH
Confidence            445567766 34443 47888888888876     22233455688888888888888888888887764

>d2hf5a1 a.39.1.5 (A:81-113) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Human (Homo sapiens), cardiac isoform [TaxId: 9606]

Probab=98.23  E-value=4.6e-07  Score=50.54  Aligned_cols=32  Identities=25%  Similarity=0.391  Sum_probs=28.5

Q ss_pred             CHHHHHHHHHhhcCCCCCcccHHHHHHHHHhh
Q psy2947         332 IPKEVVDAFKAADTTKSGKLSFPDFLKVMHTH  363 (441)
Q Consensus       332 ~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~  363 (441)
                      ++++++++|+.||+|++|+|+..|++.+|..+
T Consensus         1 seeel~eAF~~FDkDg~G~Is~~EL~~vm~~l   32 (33)
T d2hf5a1           1 SEEEIREAFRVFDKDGNGYISAAELRHVMTNL   32 (33)
T ss_dssp             CHHHHHHHHHHHSSSCCSCBCHHHHHHHTTSC
T ss_pred             CHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHc
Confidence            35789999999999999999999999988654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=1.9e-07  Score=88.89  Aligned_cols=105  Identities=19%  Similarity=0.168  Sum_probs=80.2

Q ss_pred             CcccEEeccCCCcC-----cccCCCCCCCEEEccCCCCC-----cCCcCccCCCCCcEEEccCCcCCCC---CCchhhh-
Q psy2947          61 SHAFLLSLSYTPIG-----RRIFKCDTVEVLSLKSNSLT-----SLPPDIGRLTNLRVLCLTDNCLQNA---SIPFTLT-  126 (441)
Q Consensus        61 ~~L~~l~l~~n~i~-----~~~~~l~~L~~L~l~~n~l~-----~lp~~~~~l~~L~~L~l~~n~l~~~---~~p~~~~-  126 (441)
                      .+|+.|++++|.|.     .-+..++++++|+|++|.++     .++..+..+++|++|+|++|.|+..   .+...+. 
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            36899999999775     33556789999999999988     3455678899999999999988510   0111221 


Q ss_pred             cCCCCCEEEccCCCCCc-----cchhhcCCCCCCEEEccCCcCc
Q psy2947         127 FCKNLTHLYLDNNLLDA-----LPGFLLSMPQLDTVYRHGNHNY  165 (441)
Q Consensus       127 ~l~~L~~L~l~~n~l~~-----lp~~~~~l~~L~~L~l~~N~~~  165 (441)
                      ...+|++|+|++|+++.     ++..+..+++|++|++++|.+.
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            23579999999999964     4567788999999999999863

>d3cr5x1 a.39.1.2 (X:0-89) Calcyclin (S100) {Cow (Bos taurus), s100b [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Cow (Bos taurus), s100b [TaxId: 9913]

Probab=98.21  E-value=4.5e-06  Score=59.22  Aligned_cols=67  Identities=10%  Similarity=0.143  Sum_probs=53.4

Q ss_pred             HHHHHHHHhhc-CCCC-CcccHHHHHHHHHhh----ccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         334 KEVVDAFKAAD-TTKS-GKLSFPDFLKVMHTH----SKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       334 ~~~~~~f~~~D-~d~~-g~i~~~ef~~~~~~~----~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      ..+..+|+.|. .+|+ ++++..||++++...    .......+.++.+|+..|.|+||.|+++||..++..+
T Consensus         9 ~~ii~vFhkYa~~~G~~~tLsk~Elk~Ll~~El~~~l~~~~d~~~~d~~m~~LD~n~Dg~vdF~EF~~li~~l   81 (90)
T d3cr5x1           9 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMI   81 (90)
T ss_dssp             HHHHHHHHHHHTSSSSTTSBCHHHHHHHHHHHCTTTSCCCCSHHHHHHHHHHHCTTSSSSBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCcCcCCHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence            45778888874 5554 579999999999863    2344456789999999999999999999999988764

>d1xk4c1 a.39.1.2 (C:4-86) Calcyclin (S100) {Human (Homo sapiens), s100a9 (mrp14) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), s100a9 (mrp14) [TaxId: 9606]

Probab=98.18  E-value=3.8e-06  Score=58.54  Aligned_cols=63  Identities=11%  Similarity=0.337  Sum_probs=46.2

Q ss_pred             HHHHHHHHhC-CCC-CCcccHHHHHHHHHH-hCC----C-CCHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy2947         372 EVVDAFKAAD-TTK-SGTVPAKYLKHVLVN-WGE----G-LSSKEVDQIFREANVTMNSKVRYEDFVKIAC  434 (441)
Q Consensus       372 ~~~~~f~~~D-~~~-~G~is~~ef~~~l~~-~~~----~-l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l~  434 (441)
                      .+..+|+.|. ++| .++++..||+.++.. ++.    . -.+..++.+++.+|.|+||.|+|+||+.++.
T Consensus        11 ~ii~vFhkYa~~~G~~~tLsk~Elk~Ll~~El~~~l~~~~~d~~~vd~~m~~LD~n~Dg~vdF~EF~~li~   81 (83)
T d1xk4c1          11 TIINTFHQYSVKLGHPDTLNQGEFKELVRKDLQNFLKKENKNEKVIEHIMEDLDTNADKQLSFEEFIMLMA   81 (83)
T ss_dssp             HHHHHHHHHHTTSSSTTSBCHHHHHHHHHHHTTTTTTTGGGCHHHHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred             HHHHHHHHHhCcCCCcccCCHHHHHHHHHHHhHHHhcCCCCCHHHHHHHHHHhcCCCCCcCcHHHHHHHHh
Confidence            4556777763 444 368999999999887 322    1 2345578899999999999999999988775

>d1ctda_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.16  E-value=1.2e-06  Score=46.47  Aligned_cols=30  Identities=23%  Similarity=0.398  Sum_probs=17.4

Q ss_pred             hHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         370 PKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       370 ~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      ++++.+.|+.||+++||+|+.+||..+++.
T Consensus         3 EeELae~FRifDkNaDGyiD~eEl~~ilr~   32 (34)
T d1ctda_           3 EEELANAFRIFDKNADGYIDIEELGEILRA   32 (34)
T ss_dssp             HHHHHHHHHTTCCSSSSCBCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCCcccccHHHHHHHHHh
Confidence            345555666666666666666666655554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.15  E-value=3.8e-07  Score=83.74  Aligned_cols=104  Identities=18%  Similarity=0.184  Sum_probs=61.4

Q ss_pred             CCcccEEeccCC--------CcCc---------ccCCCCCCCEEEccCCCCC-----cCCcCccCCCCCcEEEccCCcCC
Q psy2947          60 FSHAFLLSLSYT--------PIGR---------RIFKCDTVEVLSLKSNSLT-----SLPPDIGRLTNLRVLCLTDNCLQ  117 (441)
Q Consensus        60 l~~L~~l~l~~n--------~i~~---------~~~~l~~L~~L~l~~n~l~-----~lp~~~~~l~~L~~L~l~~n~l~  117 (441)
                      .++|+.|++++|        .+..         .....+.|+.|.+++|.++     .+...+....+|+.|++++|.+.
T Consensus       120 ~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  199 (344)
T d2ca6a1         120 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIR  199 (344)
T ss_dssp             CTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCC
T ss_pred             cccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhccccccccccc
Confidence            566777777766        1111         1124456777777777665     23333455667777777777764


Q ss_pred             CCC-----CchhhhcCCCCCEEEccCCCCCc-----cchhhcCCCCCCEEEccCCcC
Q psy2947         118 NAS-----IPFTLTFCKNLTHLYLDNNLLDA-----LPGFLLSMPQLDTVYRHGNHN  164 (441)
Q Consensus       118 ~~~-----~p~~~~~l~~L~~L~l~~n~l~~-----lp~~~~~l~~L~~L~l~~N~~  164 (441)
                       ..     +...+..+++|+.|+|++|.++.     +...+..+++|++|++++|.+
T Consensus       200 -~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i  255 (344)
T d2ca6a1         200 -PEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL  255 (344)
T ss_dssp             -HHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred             -ccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCcc
Confidence             10     12234556677777777777642     334556667777777777764

>d1ctda_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.10  E-value=1.5e-06  Score=46.11  Aligned_cols=31  Identities=16%  Similarity=0.409  Sum_probs=27.8

Q ss_pred             CHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q psy2947         332 IPKEVVDAFKAADTTKSGKLSFPDFLKVMHT  362 (441)
Q Consensus       332 ~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~  362 (441)
                      +++++.+.|+.||+|+||+|+.+||..+++.
T Consensus         2 sEeELae~FRifDkNaDGyiD~eEl~~ilr~   32 (34)
T d1ctda_           2 SEEELANAFRIFDKNADGYIDIEELGEILRA   32 (34)
T ss_dssp             HHHHHHHHHHTTCCSSSSCBCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHccCCcccccHHHHHHHHHh
Confidence            4678999999999999999999999988764

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=3.9e-07  Score=73.89  Aligned_cols=80  Identities=25%  Similarity=0.212  Sum_probs=63.0

Q ss_pred             cCCCCCCCEEEccCCCCCcCC---cCccCCCCCcEEEccCCcCCCCCCch-hhhcCCCCCEEEccCCCCCccc-------
Q psy2947          77 IFKCDTVEVLSLKSNSLTSLP---PDIGRLTNLRVLCLTDNCLQNASIPF-TLTFCKNLTHLYLDNNLLDALP-------  145 (441)
Q Consensus        77 ~~~l~~L~~L~l~~n~l~~lp---~~~~~l~~L~~L~l~~n~l~~~~~p~-~~~~l~~L~~L~l~~n~l~~lp-------  145 (441)
                      ...+++|++|+|++|+|+.++   ..+..+++|+.|++++|.|+  .++. ......+|+.|++++|++....       
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~--~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~  138 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK--SERELDKIKGLKLEELWLDGNSLSDTFRDQSTYI  138 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC--CGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHH
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc--cchhhhhhhccccceeecCCCCcCcCcccchhHH
Confidence            346889999999999999764   33778999999999999998  7765 3344567999999999996442       


Q ss_pred             -hhhcCCCCCCEEE
Q psy2947         146 -GFLLSMPQLDTVY  158 (441)
Q Consensus       146 -~~~~~l~~L~~L~  158 (441)
                       ..+..+|+|+.||
T Consensus       139 ~~i~~~~P~L~~LD  152 (162)
T d1koha1         139 SAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHTTSTTCCEET
T ss_pred             HHHHHHCCCCCEEC
Confidence             2356789999874

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.04  E-value=1.5e-06  Score=79.55  Aligned_cols=144  Identities=15%  Similarity=0.137  Sum_probs=93.2

Q ss_pred             CCCcccEEeccCCCcC--------cccCCCCCCCEEEccCCCCCc------CCcCccCCCCCcEEEccCCcCCC---CCC
Q psy2947          59 YFSHAFLLSLSYTPIG--------RRIFKCDTVEVLSLKSNSLTS------LPPDIGRLTNLRVLCLTDNCLQN---ASI  121 (441)
Q Consensus        59 ~l~~L~~l~l~~n~i~--------~~~~~l~~L~~L~l~~n~l~~------lp~~~~~l~~L~~L~l~~n~l~~---~~~  121 (441)
                      ..+.|+.+.++.|.+.        ..+...++|+.|+|++|+|+.      +...+..+++|+.|++++|.++.   ..+
T Consensus       156 ~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L  235 (344)
T d2ca6a1         156 NAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL  235 (344)
T ss_dssp             TCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred             cCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccc
Confidence            3567888999988664        224456889999999999872      34457788899999999998751   013


Q ss_pred             chhhhcCCCCCEEEccCCCCCcc-----chhhcC--CCCCCEEEccCCcCccCccccccccccccccc-ccchhHHH-Hh
Q psy2947         122 PFTLTFCKNLTHLYLDNNLLDAL-----PGFLLS--MPQLDTVYRHGNHNYFKSTFMWYHSDIHARIR-STSTRDEV-LR  192 (441)
Q Consensus       122 p~~~~~l~~L~~L~l~~n~l~~l-----p~~~~~--l~~L~~L~l~~N~~~~~~~~~~~~~~~p~~l~-~l~~~~~~-l~  192 (441)
                      ...+..+++|++|+|++|.|+..     -..+..  .+.|+.|++++|.+.... +    ..+...+. ..+.+..+ ++
T Consensus       236 ~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~-~----~~l~~~l~~~~~~L~~L~l~  310 (344)
T d2ca6a1         236 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA-V----RTLKTVIDEKMPDLLFLELN  310 (344)
T ss_dssp             HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHH-H----HHHHHHHHHHCTTCCEEECT
T ss_pred             cccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHH-H----HHHHHHHHccCCCCCEEECC
Confidence            34567788999999999998643     233433  367999999999853321 1    11222222 23333444 67


Q ss_pred             hcccccCCchhhhhh
Q psy2947         193 KQKKLHQPSRLQDLA  207 (441)
Q Consensus       193 ~~~~~~~p~~l~~l~  207 (441)
                      +|.+......+..+.
T Consensus       311 ~N~~~~~~~~~~~l~  325 (344)
T d2ca6a1         311 GNRFSEEDDVVDEIR  325 (344)
T ss_dssp             TSBSCTTSHHHHHHH
T ss_pred             CCcCCCcchHHHHHH
Confidence            777765554554444

>d1qlsa_ a.39.1.2 (A:) Calcyclin (S100) {Pig (Sus scrofa), calgizzarin s100c (s100a11) [TaxId: 9823]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Pig (Sus scrofa), calgizzarin s100c (s100a11) [TaxId: 9823]

Probab=97.97  E-value=1.1e-05  Score=57.67  Aligned_cols=67  Identities=16%  Similarity=0.265  Sum_probs=52.1

Q ss_pred             HHHHHHHHhhc-CCCC-CcccHHHHHHHHHhh----ccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         334 KEVVDAFKAAD-TTKS-GKLSFPDFLKVMHTH----SKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       334 ~~~~~~f~~~D-~d~~-g~i~~~ef~~~~~~~----~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      ..+..+|+.|. .+|+ ++++..||++++...    .......+.++.+|+..|.|+||.|+++||..++..+
T Consensus         9 ~~ii~vFhkYa~~~G~~~tLsk~Elk~Ll~~El~~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~li~~l   81 (95)
T d1qlsa_           9 ESLIAIFQKHAGRDGNNTKISKTEFLIFMNTELAAFTQNQKDPGVLDRMMKKLDLDSDGQLDFQEFLNLIGGL   81 (95)
T ss_dssp             HHHHHHHHHHHTTSSCTTCBCHHHHHHHHTTTSHHHHHHCCCTHHHHHHHHHHCTTCSSSBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcCCCcCcCCHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHH
Confidence            45677887774 4554 679999999988752    1233446789999999999999999999999988764

>d1tuza_ a.39.1.7 (A:) Diacylglycerol kinase alpha, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: Diacylglycerol kinase alpha, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=5.6e-05  Score=56.71  Aligned_cols=84  Identities=15%  Similarity=0.144  Sum_probs=51.9

Q ss_pred             CCcccHHHHHHHHHhhccCCCChHHHHHHHHHhC------CCCCCcccHHHHHHHHHHhCC--CCCHHHHHHHHHHhCCC
Q psy2947         348 SGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAAD------TTKSGTVPAKYLKHVLVNWGE--GLSSKEVDQIFREANVT  419 (441)
Q Consensus       348 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D------~~~~G~is~~ef~~~l~~~~~--~l~~~~~~~l~~~~d~d  419 (441)
                      .+.++.+++.++...-.-..   .+++.+++.|.      .+.+|.|+.++|+.++.....  ..++.-++.+|+.+|.+
T Consensus         5 ~s~l~p~~l~~L~~~T~fs~---~ei~~l~~~Fk~~~~~~~~p~g~i~~~~F~~~~~~~f~~~~~~~~l~~rlF~~FD~~   81 (118)
T d1tuza_           5 RGLISPSDFAQLQKYMEYST---KKVSDVLKLFEDGEMAKYVQGDAIGYEGFQQFLKIYLEVDNVPRHLSLALFQSFETG   81 (118)
T ss_dssp             CSCSCHHHHHHHHHHHHHCC---CCHHHHHHHHHTSGGGGGEETTEECHHHHHHHHHHHTTCSSCCHHHHHHHHHHSCCC
T ss_pred             cCCCCHHHHHHHHHHcCCCH---HHHHHHHHHHhccccccCCcccccCHHHHHHHHHHhCCCCCchHHHHHHHHHHHccc
Confidence            34466666665554332222   23334443331      245788888888888876542  23566777888888877


Q ss_pred             CC--------CceeHHHHHHHHh
Q psy2947         420 MN--------SKVRYEDFVKIAC  434 (441)
Q Consensus       420 ~d--------g~i~~~ef~~~l~  434 (441)
                      ++        |.|++.||+.+|.
T Consensus        82 ~d~~~~~~~~g~I~f~efv~~LS  104 (118)
T d1tuza_          82 HCLNETNVTKDVVCLNDVSCYFS  104 (118)
T ss_dssp             CCTTCCCCCSCCEEHHHHHHHHH
T ss_pred             cccccccCCCceeeHHHHHHHHH
Confidence            65        7899999998773

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.81  E-value=1e-05  Score=65.58  Aligned_cols=104  Identities=15%  Similarity=0.092  Sum_probs=69.7

Q ss_pred             CCcccEEeccCC-CcC--------cccCCCCCCCEEEccCCCCC-----cCCcCccCCCCCcEEEccCCcCCCC---CCc
Q psy2947          60 FSHAFLLSLSYT-PIG--------RRIFKCDTVEVLSLKSNSLT-----SLPPDIGRLTNLRVLCLTDNCLQNA---SIP  122 (441)
Q Consensus        60 l~~L~~l~l~~n-~i~--------~~~~~l~~L~~L~l~~n~l~-----~lp~~~~~l~~L~~L~l~~n~l~~~---~~p  122 (441)
                      .++|+.|+|+++ .|+        ..+...++|+.|+|++|.++     .+...+...+.|++|++++|.+...   .+-
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            467888899864 454        23556678899999988887     2333355678888888888888610   012


Q ss_pred             hhhhcCCCCCEEEccCCCCCcc--------chhhcCCCCCCEEEccCCc
Q psy2947         123 FTLTFCKNLTHLYLDNNLLDAL--------PGFLLSMPQLDTVYRHGNH  163 (441)
Q Consensus       123 ~~~~~l~~L~~L~l~~n~l~~l--------p~~~~~l~~L~~L~l~~N~  163 (441)
                      ..+...++|++|++++|.+..+        ...+...++|+.|+++.+.
T Consensus        94 ~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            2345567788888888865433        2445556788888876654

>d1j55a_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100p [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), s100p [TaxId: 9606]

Probab=97.79  E-value=3.2e-05  Score=55.14  Aligned_cols=67  Identities=13%  Similarity=0.121  Sum_probs=49.8

Q ss_pred             HHHHHHHHhhc-CCCC-CcccHHHHHHHHHhhc----cCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         334 KEVVDAFKAAD-TTKS-GKLSFPDFLKVMHTHS----KAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       334 ~~~~~~f~~~D-~d~~-g~i~~~ef~~~~~~~~----~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      ..+..+|+.|. .+|+ ++++..||++++....    ......+.+..+++..|.|+||.|+++||..++..+
T Consensus         9 ~~ii~vFhkYa~~~g~~~tLsk~Elk~Ll~~El~~~l~~~~d~~~vd~~m~~LD~n~Dg~vdF~EF~~li~~l   81 (94)
T d1j55a_           9 GMIIDVFSRYSGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKDLDANGDAQVDFSEFIVFVAAI   81 (94)
T ss_dssp             HHHHHHHHHHTTSSSCTTEECHHHHHHHHHHHSTTCC------CHHHHHHHHHCSSSSSSEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccCCCcccCCHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence            45677888875 4443 5899999999998633    223334579999999999999999999999988664

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=1.7e-06  Score=82.00  Aligned_cols=84  Identities=18%  Similarity=0.161  Sum_probs=63.4

Q ss_pred             CCCEEEccCCCCCc--CCcCccCCCCCcEEEccCCcCCC---CCCchhhhcCCCCCEEEccCCCCCcc-----chhhc-C
Q psy2947          82 TVEVLSLKSNSLTS--LPPDIGRLTNLRVLCLTDNCLQN---ASIPFTLTFCKNLTHLYLDNNLLDAL-----PGFLL-S  150 (441)
Q Consensus        82 ~L~~L~l~~n~l~~--lp~~~~~l~~L~~L~l~~n~l~~---~~~p~~~~~l~~L~~L~l~~n~l~~l-----p~~~~-~  150 (441)
                      +|+.|++++|+++.  +..-+..+++|+.|+|++|.++.   ..++..+..+++|++|+|++|+|+..     ...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            68999999999983  33346678999999999998861   02344567889999999999999632     23333 2


Q ss_pred             CCCCCEEEccCCcCc
Q psy2947         151 MPQLDTVYRHGNHNY  165 (441)
Q Consensus       151 l~~L~~L~l~~N~~~  165 (441)
                      ..+|+.|++++|++.
T Consensus        83 ~~~L~~L~L~~n~it   97 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLT   97 (460)
T ss_dssp             TCCCCEEECTTSCCB
T ss_pred             CCCCCEEECCCCCcc
Confidence            357999999999863

>d1xk4c1 a.39.1.2 (C:4-86) Calcyclin (S100) {Human (Homo sapiens), s100a9 (mrp14) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Human (Homo sapiens), s100a9 (mrp14) [TaxId: 9606]

Probab=97.74  E-value=7.1e-05  Score=51.87  Aligned_cols=66  Identities=11%  Similarity=0.203  Sum_probs=50.0

Q ss_pred             HHHHHHHHhhcC-CC-CCcccHHHHHHHHHhhcc----CC-CChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         334 KEVVDAFKAADT-TK-SGKLSFPDFLKVMHTHSK----AE-DIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       334 ~~~~~~f~~~D~-d~-~g~i~~~ef~~~~~~~~~----~~-~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      ..+..+|+.|.. +| .++++..||++++.....    .. .....+..+|+..|.|+||.|+++||..++..
T Consensus        10 ~~ii~vFhkYa~~~G~~~tLsk~Elk~Ll~~El~~~l~~~~~d~~~vd~~m~~LD~n~Dg~vdF~EF~~li~~   82 (83)
T d1xk4c1          10 ETIINTFHQYSVKLGHPDTLNQGEFKELVRKDLQNFLKKENKNEKVIEHIMEDLDTNADKQLSFEEFIMLMAR   82 (83)
T ss_dssp             HHHHHHHHHHHTTSSSTTSBCHHHHHHHHHHHTTTTTTTGGGCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcCCCcccCCHHHHHHHHHHHhHHHhcCCCCCHHHHHHHHHHhcCCCCCcCcHHHHHHHHhh
Confidence            456778888863 33 368999999999986432    22 23456899999999999999999999988754

>d1tuza_ a.39.1.7 (A:) Diacylglycerol kinase alpha, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: Diacylglycerol kinase alpha, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=0.0001  Score=55.25  Aligned_cols=90  Identities=11%  Similarity=0.181  Sum_probs=56.9

Q ss_pred             CCcccHHHHHHHHHhhcCCCCCHHHHHHHHHhhc---CCCCCcccHHHHHHHHHhhccCCC-ChHHHHHHHHHhCCCCC-
Q psy2947         311 GGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAAD---TTKSGKLSFPDFLKVMHTHSKAED-IPKEVVDAFKAADTTKS-  385 (441)
Q Consensus       311 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D---~d~~g~i~~~ef~~~~~~~~~~~~-~~~~~~~~f~~~D~~~~-  385 (441)
                      .+.++.+++.++.....-.......|-+.|+...   ...+|.|++++|+.++........ ...-.+.+|+.||++++ 
T Consensus         5 ~s~l~p~~l~~L~~~T~fs~~ei~~l~~~Fk~~~~~~~~p~g~i~~~~F~~~~~~~f~~~~~~~~l~~rlF~~FD~~~d~   84 (118)
T d1tuza_           5 RGLISPSDFAQLQKYMEYSTKKVSDVLKLFEDGEMAKYVQGDAIGYEGFQQFLKIYLEVDNVPRHLSLALFQSFETGHCL   84 (118)
T ss_dssp             CSCSCHHHHHHHHHHHHHCCCCHHHHHHHHHTSGGGGGEETTEECHHHHHHHHHHHTTCSSCCHHHHHHHHHHSCCCCCT
T ss_pred             cCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhccccccCCcccccCHHHHHHHHHHhCCCCCchHHHHHHHHHHHcccccc
Confidence            4456666666655543322223333333343221   245788999999888876644333 24567788999998876 


Q ss_pred             -------CcccHHHHHHHHHHh
Q psy2947         386 -------GTVPAKYLKHVLVNW  400 (441)
Q Consensus       386 -------G~is~~ef~~~l~~~  400 (441)
                             |.|++.||..+|.-+
T Consensus        85 ~~~~~~~g~I~f~efv~~LS~l  106 (118)
T d1tuza_          85 NETNVTKDVVCLNDVSCYFSLL  106 (118)
T ss_dssp             TCCCCCSCCEEHHHHHHHHHHH
T ss_pred             ccccCCCceeeHHHHHHHHHHH
Confidence                   889999999988653

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.44  E-value=6.7e-05  Score=60.50  Aligned_cols=86  Identities=10%  Similarity=0.146  Sum_probs=66.2

Q ss_pred             CCCCCCEEEccCC-CCC-----cCCcCccCCCCCcEEEccCCcCCC---CCCchhhhcCCCCCEEEccCCCCCc-----c
Q psy2947          79 KCDTVEVLSLKSN-SLT-----SLPPDIGRLTNLRVLCLTDNCLQN---ASIPFTLTFCKNLTHLYLDNNLLDA-----L  144 (441)
Q Consensus        79 ~l~~L~~L~l~~n-~l~-----~lp~~~~~l~~L~~L~l~~n~l~~---~~~p~~~~~l~~L~~L~l~~n~l~~-----l  144 (441)
                      +.++|+.|+|+++ .++     .+-..+...++|+.|++++|.+..   ..+...+...+.|++|+|++|.|+.     +
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            4688999999974 576     234457778899999999998861   1233345667899999999999963     2


Q ss_pred             chhhcCCCCCCEEEccCCcC
Q psy2947         145 PGFLLSMPQLDTVYRHGNHN  164 (441)
Q Consensus       145 p~~~~~l~~L~~L~l~~N~~  164 (441)
                      -.++...++|++|++++|.+
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSS
T ss_pred             HHHHHhCCcCCEEECCCCcC
Confidence            35677889999999999974

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.24  E-value=8.4e-05  Score=59.81  Aligned_cols=104  Identities=14%  Similarity=0.095  Sum_probs=74.3

Q ss_pred             CCcccEEeccC-CCcC--------cccCCCCCCCEEEccCCCCC-----cCCcCccCCCCCcEEEccCCcCCCC---CCc
Q psy2947          60 FSHAFLLSLSY-TPIG--------RRIFKCDTVEVLSLKSNSLT-----SLPPDIGRLTNLRVLCLTDNCLQNA---SIP  122 (441)
Q Consensus        60 l~~L~~l~l~~-n~i~--------~~~~~l~~L~~L~l~~n~l~-----~lp~~~~~l~~L~~L~l~~n~l~~~---~~p  122 (441)
                      .+.|+.|+|++ +.|.        ..+...++|+.|+|++|.++     .+-..+...++++.|++++|.+...   .+-
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~   95 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV   95 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHH
Confidence            46788999987 4554        34457789999999999987     2434466778999999999887510   122


Q ss_pred             hhhhcCCCCCEEEc--cCCCCCc-----cchhhcCCCCCCEEEccCCc
Q psy2947         123 FTLTFCKNLTHLYL--DNNLLDA-----LPGFLLSMPQLDTVYRHGNH  163 (441)
Q Consensus       123 ~~~~~l~~L~~L~l--~~n~l~~-----lp~~~~~l~~L~~L~l~~N~  163 (441)
                      ..+...++|+.++|  +.|.++.     +...+...++|+.|+++.+.
T Consensus        96 ~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          96 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            34566788887666  4667753     44566778899999988776

>d1qasa1 a.39.1.7 (A:205-298) Phosphoinositide-specific phospholipase C, isozyme D1 (PLC-D!) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: Phosphoinositide-specific phospholipase C, isozyme D1 (PLC-D!)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.65  E-value=0.0026  Score=45.18  Aligned_cols=68  Identities=13%  Similarity=0.110  Sum_probs=51.7

Q ss_pred             hHHHHHHHHHhCCCCCCcccHHHHHHHHHHh-C-CCCCHHHHHHHHHHhCCCC----CCceeHHHHHHHHhccCC
Q psy2947         370 PKEVVDAFKAADTTKSGTVPAKYLKHVLVNW-G-EGLSSKEVDQIFREANVTM----NSKVRYEDFVKIACAPVP  438 (441)
Q Consensus       370 ~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~-~-~~l~~~~~~~l~~~~d~d~----dg~i~~~ef~~~l~~~~~  438 (441)
                      ..+|..+|..+-. +.+.||.++|.++|... + ..++.+.++.++.++..+.    .+.++++.|..+|....+
T Consensus         7 R~ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~ii~~~e~~~~~~~~~~ls~~gF~~fL~S~~N   80 (94)
T d1qasa1           7 RAEIDRAFEEAAG-SAETLSVERLVTFLQHQQREEEAGPALALSLIERYEPSETAKAQRQMTKDGFLMYLLSADG   80 (94)
T ss_dssp             CHHHHHHHHHHHT-TSSSCBHHHHHHHHHHTSCCTTCSHHHHHHHHHHHCCCHHHHHTTBCCHHHHHHHHHSSTT
T ss_pred             cHHHHHHHHHHhC-CCCccCHHHHHHHHHHHcCCccCCHHHHHHHHHHHcccHhhhhcCCcCHHHHHHHHcCccc
Confidence            4678888888843 44679999999999874 3 3478888888999987553    367999999999976643

>d1sraa_ a.39.1.3 (A:) C-terminal (EC) domain of BM-40/SPARC/osteonectin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Osteonectin
domain: C-terminal (EC) domain of BM-40/SPARC/osteonectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.00053  Score=52.79  Aligned_cols=57  Identities=9%  Similarity=0.090  Sum_probs=30.2

Q ss_pred             HHHHHhCCC-CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy2947         375 DAFKAADTT-KSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA  433 (441)
Q Consensus       375 ~~f~~~D~~-~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l  433 (441)
                      -.|...|.| .||.|+..|++.+.+.+.  ..+..++..++..|.|+||.|++.|+..++
T Consensus        81 W~F~~LD~n~~D~~L~~~EL~~l~~~L~--~~e~C~~~F~~~CD~n~D~~Is~~EW~~Cf  138 (151)
T d1sraa_          81 WQFGQLDQHPIDGYLSHTELAPLRAPLI--PMEHCTTRFFETCDLDNDKYIALDEWAGCF  138 (151)
T ss_dssp             HHHHHHCCTTCSSEECTTTTGGGGSTTS--TTGGGHHHHHHHHCTTCSSSEEHHHHHHHT
T ss_pred             eehhhcCCCCCCCccCHHHHHHHHHhhc--CCchHHHHHHHHhcCCCCCcCCHHHHHHHc
Confidence            345556665 356666666555432221  223345556666666666666666665554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.09  E-value=0.0022  Score=51.02  Aligned_cols=84  Identities=14%  Similarity=0.162  Sum_probs=61.7

Q ss_pred             CCCCCCCEEEccC-CCCC-----cCCcCccCCCCCcEEEccCCcCCCC---CCchhhhcCCCCCEEEccCCCCC-----c
Q psy2947          78 FKCDTVEVLSLKS-NSLT-----SLPPDIGRLTNLRVLCLTDNCLQNA---SIPFTLTFCKNLTHLYLDNNLLD-----A  143 (441)
Q Consensus        78 ~~l~~L~~L~l~~-n~l~-----~lp~~~~~l~~L~~L~l~~n~l~~~---~~p~~~~~l~~L~~L~l~~n~l~-----~  143 (441)
                      .+.+.|+.|+|++ +.++     .+-..+...++|++|++++|.+...   .+-..+...++|+.+++++|.++     .
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            4568999999997 5676     2444567889999999999988610   12223456789999999999985     2


Q ss_pred             cchhhcCCCCCCEEEccC
Q psy2947         144 LPGFLLSMPQLDTVYRHG  161 (441)
Q Consensus       144 lp~~~~~l~~L~~L~l~~  161 (441)
                      +-..+...++|+.++|+.
T Consensus        94 l~~~l~~~~~L~~l~L~l  111 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDN  111 (166)
T ss_dssp             HHHGGGGCSSCCEEECCC
T ss_pred             HHHHHHhCccccEEeecc
Confidence            336677788999877754

>d1sraa_ a.39.1.3 (A:) C-terminal (EC) domain of BM-40/SPARC/osteonectin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Osteonectin
domain: C-terminal (EC) domain of BM-40/SPARC/osteonectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.82  E-value=0.0017  Score=49.91  Aligned_cols=61  Identities=13%  Similarity=0.087  Sum_probs=48.3

Q ss_pred             HHHHHHHHhhcCC-CCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy2947         334 KEVVDAFKAADTT-KSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVL  397 (441)
Q Consensus       334 ~~~~~~f~~~D~d-~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l  397 (441)
                      ..+...|...|.| .||.++..|+..+.+.+.   ..+.-++..|+.+|.|+||.||..|+..-+
T Consensus        77 ~~v~W~F~~LD~n~~D~~L~~~EL~~l~~~L~---~~e~C~~~F~~~CD~n~D~~Is~~EW~~Cf  138 (151)
T d1sraa_          77 FPVHWQFGQLDQHPIDGYLSHTELAPLRAPLI---PMEHCTTRFFETCDLDNDKYIALDEWAGCF  138 (151)
T ss_dssp             HHHHHHHHHHCCTTCSSEECTTTTGGGGSTTS---TTGGGHHHHHHHHCTTCSSSEEHHHHHHHT
T ss_pred             ccceeehhhcCCCCCCCccCHHHHHHHHHhhc---CCchHHHHHHHHhcCCCCCcCCHHHHHHHc
Confidence            3577889999999 599999999877543331   223457788999999999999999988776

>d1qasa1 a.39.1.7 (A:205-298) Phosphoinositide-specific phospholipase C, isozyme D1 (PLC-D!) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: Phosphoinositide-specific phospholipase C, isozyme D1 (PLC-D!)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.20  E-value=0.03  Score=39.40  Aligned_cols=67  Identities=13%  Similarity=0.209  Sum_probs=52.7

Q ss_pred             CHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhccCC-CChHHHHHHHHHhCCCC----CCcccHHHHHHHHHH
Q psy2947         332 IPKEVVDAFKAADTTKSGKLSFPDFLKVMHTHSKAE-DIPKEVVDAFKAADTTK----SGTVPAKYLKHVLVN  399 (441)
Q Consensus       332 ~~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~-~~~~~~~~~f~~~D~~~----~G~is~~ef~~~l~~  399 (441)
                      ...++..+|..+-.+ .+.++.++|..++...++.. ...+.+..+|+.+.++.    .|.+|.++|..+|..
T Consensus         6 ~R~ei~~if~~ys~~-~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~ii~~~e~~~~~~~~~~ls~~gF~~fL~S   77 (94)
T d1qasa1           6 QRAEIDRAFEEAAGS-AETLSVERLVTFLQHQQREEEAGPALALSLIERYEPSETAKAQRQMTKDGFLMYLLS   77 (94)
T ss_dssp             CCHHHHHHHHHHHTT-SSSCBHHHHHHHHHHTSCCTTCSHHHHHHHHHHHCCCHHHHHTTBCCHHHHHHHHHS
T ss_pred             ccHHHHHHHHHHhCC-CCccCHHHHHHHHHHHcCCccCCHHHHHHHHHHHcccHhhhhcCCcCHHHHHHHHcC
Confidence            346788888888654 46799999999999877653 45667889999997664    478999999999865

>d1h8ba_ a.39.1.7 (A:) alpha-Actinin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: alpha-Actinin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.77  E-value=0.21  Score=32.43  Aligned_cols=61  Identities=13%  Similarity=0.284  Sum_probs=48.0

Q ss_pred             CCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCC-----CCCCceeHHHHHHHHhc
Q psy2947         367 EDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANV-----TMNSKVRYEDFVKIACA  435 (441)
Q Consensus       367 ~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~-----d~dg~i~~~ef~~~l~~  435 (441)
                      ..+.+.+...|+.. .++..+||.+|+++.|       +.++++-++.++-.     ...|..+|..|++.+..
T Consensus         4 ~~TaEqv~~aFr~l-A~~KpyVT~~dL~~~L-------~peqaeyc~~~M~~y~~~~~~~~ayDY~sF~~~l~g   69 (73)
T d1h8ba_           4 TDTAEQVIASFRIL-ASDKPYILAEELRREL-------PPDQAQYCIKRMPAYSGPGSVPGALDYAAFSSALYG   69 (73)
T ss_dssp             CSTHHHHHHHHHHH-TTSCSSBCHHHHHHHS-------CHHHHHHHHHHSCSCCCSSCCTTCBCHHHHHHHHTC
T ss_pred             cccHHHHHHHHHHH-hCCCCeeCHHHHHhhc-------CHHHHHHHHHHCcccCCCCCCCCcccHHHHHHHHhc
Confidence            34568889999998 5779999999998765       56788888888853     13567999999998754

>d1j7qa_ a.39.1.5 (A:) Calcium vector protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium vector protein
species: Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]

Probab=93.03  E-value=0.22  Score=30.99  Aligned_cols=67  Identities=16%  Similarity=0.292  Sum_probs=53.9

Q ss_pred             hHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCC-CC-CCceeHHHHHHHHhcc
Q psy2947         370 PKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANV-TM-NSKVRYEDFVKIACAP  436 (441)
Q Consensus       370 ~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~~~~l~~~~~~~l~~~~d~-d~-dg~i~~~ef~~~l~~~  436 (441)
                      .++.-.+|..||.+....-...+-..++.++|...+..+.++++++.-. .| ...|.-+|++...+++
T Consensus        13 kdecmkifdifdrnaeniapvsdtmdmltklgqtytkreteaimkeargpkgdkknigpeewltlcskw   81 (86)
T d1j7qa_          13 KDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQTYTKRETEAIMKEARGPKGDKKNIGPEEWLTLCSKW   81 (86)
T ss_dssp             HHHHHHHHHHHSTTTTSCBCHHHHHHHHHHTSCCCSHHHHHHHHHHHHCSSCSSCCBCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccCCcchHHHHHHHhhhHHhHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHH
Confidence            4567788999999999999999999999999999999999999998742 12 2347778888766554

>d2cclb1 a.139.1.1 (B:1-59) Endo-1,4-beta-xylanase Y {Clostridium thermocellum [TaxId: 1515]}

class: All alpha proteins
fold: Type I dockerin domain
superfamily: Type I dockerin domain
family: Type I dockerin domain
domain: Endo-1,4-beta-xylanase Y
species: Clostridium thermocellum [TaxId: 1515]

Probab=92.90  E-value=0.22  Score=31.19  Aligned_cols=53  Identities=21%  Similarity=0.241  Sum_probs=36.2

Q ss_pred             cCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         344 DTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       344 D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      |.|++|.|+.-++..+...........+   .-|...|.++||.|+..++..+.+.
T Consensus         2 DvN~Dg~vni~D~~~l~~~il~~~~~~~---~~~~aaDvn~Dg~i~i~D~~~l~~~   54 (59)
T d2cclb1           2 DVNGDGTINSTDLTMLKRSVLRAITLTD---DAKARADVDKNGSINAADVLLLSRY   54 (59)
T ss_dssp             CTTCSSSCCHHHHHHHHHHHTTSSCCCH---HHHHHHCTTCSSCCSHHHHHHHHHH
T ss_pred             CCCCCCCCcHHHHHHHHHHHhCCCCCCh---hhhhccccCCCCCCCHHHHHHHHHH
Confidence            5678888888888777765543332222   2466778888888888888777665

>d1pula1 a.39.1.11 (A:18-120) Hypothetical protein c32e8.3 {Caenorhabditis elegans [TaxId: 6239]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: p25-alpha
domain: Hypothetical protein c32e8.3
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.25  E-value=0.46  Score=33.34  Aligned_cols=46  Identities=13%  Similarity=0.252  Sum_probs=24.2

Q ss_pred             cccHHHHHHHHHHhC----CCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy2947         387 TVPAKYLKHVLVNWG----EGLSSKEVDQIFREANVTMNSKVRYEDFVKIA  433 (441)
Q Consensus       387 ~is~~ef~~~l~~~~----~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l  433 (441)
                      .++-..|..+|+..+    ..++..+++-+|.++- ....+|+|++|..+|
T Consensus        24 em~~~~f~Kl~kdc~lid~K~~T~tdvDIiF~K~k-~k~~ri~f~~F~~aL   73 (103)
T d1pula1          24 EMTGKNFDKWLKDAGVLDNKAITGTMTGIAFSKVT-GPKKKATFDETKKVL   73 (103)
T ss_dssp             CCCHHHHHHHHHHHTSCCSSSSCHHHHHHHHHHHT-CSSSCCCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHcCCCcCCCCCccchhhhhHhhc-CCCCCcCHHHHHHHH
Confidence            455566666665532    2355555555665553 223345666665555

>d1wlma1 a.39.1.11 (A:8-145) Protein cgi-38 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: p25-alpha
domain: Protein cgi-38
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.91  E-value=0.6  Score=34.77  Aligned_cols=49  Identities=10%  Similarity=0.112  Sum_probs=26.1

Q ss_pred             ccHHHHHHHHHhhc--c-CCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         351 LSFPDFLKVMHTHS--K-AEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       351 i~~~ef~~~~~~~~--~-~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      ++-..|..++....  . ...+...+..+|..+-.-+...|++++|.++|..
T Consensus        30 m~~~~f~K~~kd~~lid~K~~T~t~~diiF~k~k~k~~r~i~f~~F~~aL~~   81 (138)
T d1wlma1          30 MNGKNWAKLCKDCKVADGKAVTGTDVDIVFSKVKAKSARVINYEEFKKALEE   81 (138)
T ss_dssp             EEHHHHHHHHHHTSCCCSSSSCHHHHHHHHHHHSCSSCSEEEHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCCcCCccchhhHHHHHHHhhcCCCcccCHHHHHHHHHH
Confidence            56666666665432  1 1233445555666654444555666666666543

>d1dava_ a.139.1.1 (A:) Cellulosome endoglucanase SS {Clostridium thermocellum [TaxId: 1515]}

class: All alpha proteins
fold: Type I dockerin domain
superfamily: Type I dockerin domain
family: Type I dockerin domain
domain: Cellulosome endoglucanase SS
species: Clostridium thermocellum [TaxId: 1515]

Probab=86.66  E-value=0.21  Score=32.67  Aligned_cols=52  Identities=17%  Similarity=0.116  Sum_probs=36.5

Q ss_pred             cCCCCCcccHHHHHHHHHhhccCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q psy2947         344 DTTKSGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW  400 (441)
Q Consensus       344 D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~~  400 (441)
                      |.|++|.|+..+...++..........     -+..+|.++||.|+..++..+.+.+
T Consensus         8 DvN~DG~Vd~~D~~~~~~~i~~~~~~~-----~~~~aDvn~DG~Id~~D~~~l~~~i   59 (71)
T d1dava_           8 DVNDDGKVNSTDAVALKRYVLRSGISI-----NTDNADLNEDGRVNSTDLGILKRYI   59 (71)
T ss_dssp             CSSSSSBSSGGGHHHHHHHHHCSCSCC-----CGGGTCSSSSSSCSSHHHHHHHHHT
T ss_pred             ccCCCCCCcHHHHHHHHHHHcCCCCcC-----CCcceecCCCCCcCHHHHHHHHHHH
Confidence            678888888888877776653322111     1335789999999999988887764

>d1eg3a2 a.39.1.7 (A:210-306) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: Dystrophin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.24  E-value=3.6  Score=28.09  Aligned_cols=64  Identities=14%  Similarity=0.139  Sum_probs=39.5

Q ss_pred             HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhc------------cCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q psy2947         333 PKEVVDAFKAADTTKSGKLSFPDFLKVMHTHS------------KAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN  399 (441)
Q Consensus       333 ~~~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~------------~~~~~~~~~~~~f~~~D~~~~G~is~~ef~~~l~~  399 (441)
                      +++.+.+|+.+ .|.+|.++..-|..+++...            +....+..++..|+..  .+...|+.++|..+|..
T Consensus         3 ~dKyRYlF~qi-sd~~g~~~~~kl~~lL~d~lqlP~~vgE~~sFG~s~ie~sv~sCF~~~--~~~~~i~~~~FL~wl~~   78 (97)
T d1eg3a2           3 EDKYRYLFKQV-ASSTGFCDQRRLGLLLHDSIQIPRQLGEVASFGGSNIEPSVRSCFQFA--NNKPEIEAALFLDWMRL   78 (97)
T ss_dssp             HHHHHHHHHHH-SCTTSCBCHHHHHHHHHHHHHHHHHTTCGGGGTCSCCHHHHHHHHHHT--TTCSCBCHHHHHHHHHT
T ss_pred             HHHHHHHHHHH-hCCCCCCcHHHHHHHHHHHHHHHHHhCcccccCCCcchHHHHHHHhcc--CCCCcccHHHHHHHHHh
Confidence            35677777777 47778888777776665431            1122245666777554  23445777777777753

>d2cclb1 a.139.1.1 (B:1-59) Endo-1,4-beta-xylanase Y {Clostridium thermocellum [TaxId: 1515]}

class: All alpha proteins
fold: Type I dockerin domain
superfamily: Type I dockerin domain
family: Type I dockerin domain
domain: Endo-1,4-beta-xylanase Y
species: Clostridium thermocellum [TaxId: 1515]

Probab=83.60  E-value=1.3  Score=27.39  Aligned_cols=49  Identities=18%  Similarity=0.218  Sum_probs=38.1

Q ss_pred             CCCCCCcccHHHHHHHHHHh-C-CCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy2947         381 DTTKSGTVPAKYLKHVLVNW-G-EGLSSKEVDQIFREANVTMNSKVRYEDFVKIA  433 (441)
Q Consensus       381 D~~~~G~is~~ef~~~l~~~-~-~~l~~~~~~~l~~~~d~d~dg~i~~~ef~~~l  433 (441)
                      |.++||.|+..++..+...+ + ..+++.+    +...|.++||.|+..++...+
T Consensus         2 DvN~Dg~vni~D~~~l~~~il~~~~~~~~~----~~aaDvn~Dg~i~i~D~~~l~   52 (59)
T d2cclb1           2 DVNGDGTINSTDLTMLKRSVLRAITLTDDA----KARADVDKNGSINAADVLLLS   52 (59)
T ss_dssp             CTTCSSSCCHHHHHHHHHHHTTSSCCCHHH----HHHHCTTCSSCCSHHHHHHHH
T ss_pred             CCCCCCCCcHHHHHHHHHHHhCCCCCChhh----hhccccCCCCCCCHHHHHHHH
Confidence            67999999999999988764 3 2344443    567899999999999887654