Psyllid ID: psy2951
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1466 | 2.2.26 [Sep-21-2011] | |||||||
| Q96NN9 | 605 | Apoptosis-inducing factor | yes | N/A | 0.327 | 0.793 | 0.414 | 1e-111 | |
| Q3TY86 | 605 | Apoptosis-inducing factor | yes | N/A | 0.327 | 0.793 | 0.406 | 1e-110 | |
| Q10499 | 611 | Apoptosis-inducing factor | yes | N/A | 0.325 | 0.780 | 0.347 | 2e-66 | |
| P16640 | 422 | Putidaredoxin reductase O | no | N/A | 0.248 | 0.862 | 0.293 | 3e-41 | |
| D5IGG6 | 414 | Ferredoxin--NAD(P)(+) red | N/A | N/A | 0.241 | 0.855 | 0.300 | 5e-34 | |
| B5Z115 | 400 | 3-phenylpropionate/cinnam | yes | N/A | 0.223 | 0.817 | 0.289 | 2e-31 | |
| Q8XA71 | 400 | 3-phenylpropionate/cinnam | N/A | N/A | 0.223 | 0.817 | 0.289 | 2e-31 | |
| P43494 | 427 | Rhodocoxin reductase OS=R | no | N/A | 0.246 | 0.847 | 0.270 | 5e-30 | |
| B1LNJ8 | 400 | 3-phenylpropionate/cinnam | yes | N/A | 0.220 | 0.807 | 0.280 | 1e-29 | |
| B7N6C9 | 400 | 3-phenylpropionate/cinnam | yes | N/A | 0.188 | 0.69 | 0.298 | 1e-29 |
| >sp|Q96NN9|AIFM3_HUMAN Apoptosis-inducing factor 3 OS=Homo sapiens GN=AIFM3 PE=1 SV=1 | Back alignment and function desciption |
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Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/490 (41%), Positives = 306/490 (62%), Gaps = 10/490 (2%)
Query: 977 NIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQN 1036
+A+G KC HYGAPLVKG L GRVRCPWHGACFNI+TGD+EDFPG+DSL ++V I+
Sbjct: 101 EFHALGHKCPHYGAPLVKGVLSRGRVRCPWHGACFNISTGDLEDFPGLDSLHKFQVKIEK 160
Query: 1037 DDSVVVQARKDELKNKKRKLPMAKLSS-----GNKDTFIVVGGGPSGATCVETLRQNGFT 1091
+ V V+A K L+ ++R MAK S + ++VG G +G C ETLRQ GF+
Sbjct: 161 E-KVYVRASKQALQLQRRTKVMAKCISPSAGYSSSTNVLIVGAGAAGLVCAETLRQEGFS 219
Query: 1092 GKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEK 1151
++ T + LPYDR KLSK LD + + + LR +EF++ I V+ ++++ ++ K
Sbjct: 220 DRIVLCTLDRHLPYDRPKLSKSLDTQPEQLALRPKEFFRAYGIEVLTEAQVVT-VDVRTK 278
Query: 1152 KIKLQDGTSIDFTKIYLATGSSPRTIS-QADGVNKVFYLRTVEDANNIAPHITPESNVVV 1210
K+ +DG ++++K+ LA GSSP+T+S + V VF +RT EDAN + + NVVV
Sbjct: 279 KVVFKDGFKLEYSKLLLAPGSSPKTLSCKGKEVENVFTIRTPEDANRVV-RLARGRNVVV 337
Query: 1211 IGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANV 1270
+G+ F+GME AA+ K SV+VV PF+ LG+ VG + K+FE+ VKF M+ V
Sbjct: 338 VGAGFLGMEVAAYLTEKAHSVSVVELEETPFRRFLGERVGRALMKMFENNRVKFYMQTEV 397
Query: 1271 SSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLE 1330
S + ++ + L + + AD+ +VGIG V T +L G+ L+ + + VN+ ++
Sbjct: 398 SEL-RGQEGKLKEVVLKSSKVVRADVCVVGIGAVPATGFLRQSGIGLDSRGFIPVNKMMQ 456
Query: 1331 TNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTM 1390
TNVPGV+A GD PL N+ +I H+Q+A GR+AA NM+ ++ +ST+P+ WT
Sbjct: 457 TNVPGVFAAGDAVTFPLAWRNNRKVNIPHWQMAHAQGRVAAQNMLAQEAEMSTVPYLWTA 516
Query: 1391 LFGVGFRFAGYAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTVGMDPLAAQFAERIKM 1450
+FG R+AGY G V I GDLE LKF A+Y+ D+V+A+ ++ DP+ ++ AE +
Sbjct: 517 MFGKSLRYAGYGEGFDDVIIQGDLEELKFVAFYTKGDEVIAVASMNYDPIVSKVAEVLAS 576
Query: 1451 QKYIQKDQIE 1460
+ I+K ++E
Sbjct: 577 GRAIRKREVE 586
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Induces apoptosis through a caspase dependent pathway. Reduces mitochondrial membrane potential. Homo sapiens (taxid: 9606) EC: 1EC: .EC: -EC: .EC: -EC: .EC: - |
| >sp|Q3TY86|AIFM3_MOUSE Apoptosis-inducing factor 3 OS=Mus musculus GN=Aifm3 PE=2 SV=1 | Back alignment and function description |
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Score = 401 bits (1030), Expect = e-110, Method: Compositional matrix adjust.
Identities = 199/490 (40%), Positives = 307/490 (62%), Gaps = 10/490 (2%)
Query: 977 NIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQN 1036
+A+G KC HYGAPLVKG L GRVRCPWHGACFNI+TGD+EDFPG+DSL ++V I+
Sbjct: 101 EFHALGHKCPHYGAPLVKGVLSRGRVRCPWHGACFNISTGDLEDFPGLDSLHKFQVKIEK 160
Query: 1037 DDSVVVQARKDELKNKKRKLPMAKL---SSGNKDT--FIVVGGGPSGATCVETLRQNGFT 1091
+ V ++A K L+ ++R MAK S+G+ + ++VG G +G C ETLRQ GF+
Sbjct: 161 E-KVTIRASKQALQLQRRTKVMAKCISPSAGHSSSTNVLIVGAGAAGLVCAETLRQEGFS 219
Query: 1092 GKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEK 1151
++ T + LPYDR KLSK LD + + + LR +EF++ I ++ ++++ ++ K
Sbjct: 220 DRIVLCTLDRHLPYDRAKLSKSLDAQPEQLALRPKEFFRAYGIEMLTEAQVVT-VDVRNK 278
Query: 1152 KIKLQDGTSIDFTKIYLATGSSPRTIS-QADGVNKVFYLRTVEDANNIAPHITPESNVVV 1210
K+ +DG ++++K+ LA GSSP+T++ + V VF +RT EDAN + + N VV
Sbjct: 279 KVVFKDGFKLEYSKLLLAPGSSPKTLTCKGKDVENVFTIRTPEDANRVL-RLARGRNAVV 337
Query: 1211 IGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANV 1270
+G+ F+GME AA+ K SV+VV PF+ LG+ VG + K+FE+ VKF M+ V
Sbjct: 338 VGAGFLGMEVAAYLTEKAHSVSVVELEETPFRRFLGERVGRALMKMFENNRVKFYMQTEV 397
Query: 1271 SSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLE 1330
S E + L + + AD+ ++GIG V T +L G+ L+ + + VN+ ++
Sbjct: 398 SELRAQE-GKLQEVVLKSSKVLRADVCVLGIGAVPATGFLRQSGIGLDSRGFIPVNKMMQ 456
Query: 1331 TNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTM 1390
TNVPGV+A GD PL N+ +I H+Q+A GR+AA NM+ ++ ++T+P+ WT
Sbjct: 457 TNVPGVFAAGDAVTFPLAWRNNRKVNIPHWQMAHAQGRVAAQNMLAQEAEINTVPYLWTA 516
Query: 1391 LFGVGFRFAGYAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTVGMDPLAAQFAERIKM 1450
+FG R+AGY G V I GDLE LKF A+Y+ +D+V+A+ ++ DP+ ++ AE +
Sbjct: 517 MFGKSLRYAGYGEGFDDVIIQGDLEELKFVAFYTKSDEVIAVASMNYDPIVSKVAEVLAS 576
Query: 1451 QKYIQKDQIE 1460
+ I+K ++E
Sbjct: 577 GRAIRKREVE 586
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Induces apoptosis through a caspase dependent pathway. Reduces mitochondrial membrane potential. Mus musculus (taxid: 10090) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|Q10499|AIF1_SCHPO Apoptosis-inducing factor 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=aif1 PE=3 SV=3 | Back alignment and function description |
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Score = 255 bits (651), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 183/527 (34%), Positives = 269/527 (51%), Gaps = 50/527 (9%)
Query: 976 RNIY-AVGTKCSHYGAPLVKGSL-GDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVT 1033
RN Y A KCSHYGAPL KG + DG + CPWHGACFN ATGD+ED P + +L + VT
Sbjct: 87 RNTYFATAGKCSHYGAPLAKGVVTSDGHIVCPWHGACFNAATGDVEDTPAIAALRTFPVT 146
Query: 1034 IQNDDSVVVQARKDELKNKK-----------RKLPMAKLSSGNKDTFI------VVGGGP 1076
+ D S+ ++ E KN R + G+ +T + ++GGG
Sbjct: 147 EEGDGSLWIEV---EDKNDNGASVLQPEGCWRNKATEVYNKGSVETEVTAPHVCIIGGGK 203
Query: 1077 SGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHV 1136
+ E LR+ F GK+ T E+ +PYDR KLSK L + LR++E+Y D DI
Sbjct: 204 GASVAAEYLREKNFKGKITIFTREDEVPYDRPKLSKSLLHDISKLALRSKEYYDDLDIS- 262
Query: 1137 IKGKKIISDSELNEKKIKL--QDGTSIDFTKIYLATGSSPRT--ISQADGVNKVFYLRTV 1192
++ +L EKKI + + +TK+ LATG P I D N V+ LR++
Sbjct: 263 FHFNTDVTKIDLAEKKIYCGSDEKPTESYTKLILATGGEPNKLPIPGLDSKN-VYLLRSI 321
Query: 1193 EDANNIAPHITP---ESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEV 1249
DA+ +A T + N+V+IGSSFIG+E A K +V+V+G ++PF++ +GKEV
Sbjct: 322 ADASKLAAVTTEAGDKKNIVIIGSSFIGLELAVVL--KDHNVSVIGMESIPFEKVMGKEV 379
Query: 1250 GERITKLFESKGVKFVMKANVSSFEKNEKNDVTAAN---LDNGTTIPADLVIVGIGTVLN 1306
G + L E G+ F ++ ++ K ND + A L +G +IPAD+VI+ G N
Sbjct: 380 GTALKALHEQNGIAFYLENSIKEV-KTSSNDSSKAEHIVLKDGQSIPADVVILAAGVKPN 438
Query: 1307 TNYLDGKGVELNGQKAVVVNEYLET-NVPGVYAGGDIAYAPL----HSFYNKNASIGHYQ 1361
YL G V L V V+E+ VYA GDIA+AP S + I H+
Sbjct: 439 LRYL-GNAVSLEKDGGVKVDEHCRVLGAEDVYAVGDIAHAPFAGLPSSGEKSHTRIEHWD 497
Query: 1362 LAQYHGRIAALNMV----EKKTSLSTIPFFWTMLFGVGFRFAG--YAAGHTQVDIVGDLE 1415
+A GR+AA +++ T+ S P+FW+ G R+ G A G V I G L
Sbjct: 498 VAGNLGRVAADHILFGNKAGYTTKSFTPYFWSAQ-GKQLRYCGNNAAEGFDDVVIQGSLS 556
Query: 1416 ALKFTAYYSNADKVLAILTVGMDPLAAQFAERIKMQKYIQKDQIENN 1462
KF +++ +KV+ + ++ DP+ +Q A K Q++ N
Sbjct: 557 DYKFACFFTKGEKVVGVCSIMKDPVVSQCARLFIKDAMPSKSQLKEN 603
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Putative FAD-dependent oxidoreductase involved in the resistance to cercosporin and other singlet oxygen-generating photosensitizers. Translocates from mitochondria to the nucleus under apoptotic conditions, where it degrades DNA and induces apoptosis. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|P16640|CAMA_PSEPU Putidaredoxin reductase OS=Pseudomonas putida GN=camA PE=1 SV=1 | Back alignment and function description |
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Score = 172 bits (435), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 111/378 (29%), Positives = 184/378 (48%), Gaps = 14/378 (3%)
Query: 44 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL---DIKADSILL 100
D ++VG G +G LR +G+ G + + D +P+ LSK A+S+ L
Sbjct: 5 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYL 64
Query: 101 RTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGV 160
RT + Y +I ++ G ++ + + + +++ L DG ++D+ ++ LATG PR + A G
Sbjct: 65 RTPDAYAAQNIQLLGGTQVTAINR-DRQQVILSDGRALDYDRLVLATGGRPRPLPVASGA 123
Query: 161 ----NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAV 216
N YLRT+EDA I + ++ +VVIG +IG+E AA VT++ A
Sbjct: 124 VGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAAR 183
Query: 217 PFQESLGKEVGERITKLFESKGVKFVMKANVSSFE-KNEKNDVTAANLDNGTTIPADLVI 275
+ V L GV V FE ++ VTA ++GT +PADLVI
Sbjct: 184 VLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVI 243
Query: 276 VGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHS-FYNKNASI 334
GIG + N G++++ +V+NE+++T+ P + A GD A HS Y++ I
Sbjct: 244 AGIGLIPNCELASAAGLQVD--NGIVINEHMQTSDPLIMAVGDCAR--FHSQLYDRWVRI 299
Query: 335 GHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLEAL 394
A R A + K P+FW+ + +G + G + G+ ++ + G L
Sbjct: 300 ESVPNALEQARKIAAILCGKVPRDEAAPWFWSDQYEIGLKMVGLSEGYDRIIVRGSLAQP 359
Query: 395 KFTAYYSNADKVLAILTV 412
F+ +Y D+VLA+ TV
Sbjct: 360 DFSVFYLQGDRVLAVDTV 377
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The oxidation of camphor by cytochrome P450-CAM requires the participation of a flavoprotein, putidaredoxin reductase, and an iron-sulfur protein, putidaredoxin, to mediate the transfer of electrons from NADH to P450 for oxygen activation. Pseudomonas putida (taxid: 303) EC: 1 EC: . EC: 1 EC: 8 EC: . EC: 1 EC: . EC: - |
| >sp|D5IGG6|FDR_SPHSX Ferredoxin--NAD(P)(+) reductase fdr OS=Sphingomonas sp. GN=fdr PE=1 SV=1 | Back alignment and function description |
|---|
Score = 147 bits (372), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 112/373 (30%), Positives = 177/373 (47%), Gaps = 19/373 (5%)
Query: 47 IVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL---DIKADSILLRTE 103
++VG G GA LRQNGF G + I E LPY+R LSK+ + + IL+R
Sbjct: 9 VIVGAGHGGAQTAIALRQNGFAGTIAIIGAEPDLPYERPPLSKEYLAAEKGFERILIRPA 68
Query: 104 EFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTK-IYLATGSSPRTISQADGVNK 162
F+ D I + G + + ++ + L DG S+ + ++ A GS+ R +
Sbjct: 69 SFWNDRHIAMHLGCAV-ERVDPTQRLVFLADGRSMGYGDLVWCAGGSARRLDCTGHDLGG 127
Query: 163 VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESL 222
V Y+RT D + +A + S VV+IG +IG+EAAA A K+VT++ L
Sbjct: 128 VHYVRTRADTDALAAELPGVSKVVIIGGGYIGLEAAAVMAKFGKNVTLI----EALDRVL 183
Query: 223 GKEVGERITKLFE----SKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 278
+ GE +++ FE S+GV ++ V + VT L++ IPADLVIVGI
Sbjct: 184 ARVAGEPLSRFFEEKHRSRGVDVRLRTKVGCL-LGQDGRVTHVELNDADPIPADLVIVGI 242
Query: 279 GTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIG--H 336
G + + L G + ++V+ T++P VYA GD A A ++SF + I
Sbjct: 243 GIIPAISPLVVAGAK--ASNGLLVDASGRTSIPHVYALGDCA-AHVNSFAPNDIPIRLES 299
Query: 337 YQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLEALKF 396
Q A + A + +P+FW+ + + + G AG+ Q + GD F
Sbjct: 300 VQNANDQAVVVARTICGTAAQYHAVPWFWSSQYDIRLQTVGLTAGYDQTFVRGDPATGSF 359
Query: 397 TAYYSNADKVLAI 409
T Y +V+A+
Sbjct: 360 TVVYGRDGRVIAL 372
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Part of the multicomponent carbazole 1,9a-dioxygenase (CARDO), that converts carbazole (CAR) into 2-aminobiphenyl-2,3-diol. Sphingomonas sp (taxid: 28214) EC: 1 EC: . EC: 1 EC: 8 EC: . EC: 1 EC: . EC: 3 |
| >sp|B5Z115|HCAD_ECO5E 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin--NAD(+) reductase component OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=hcaD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 100/346 (28%), Positives = 176/346 (50%), Gaps = 19/346 (5%)
Query: 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRT 102
+ T I+VGGG + A +LRQ GFTG+L+ +DE LPY+R LSK + ++ DS L++
Sbjct: 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDEQHLPYERPPLSKSMLLE-DSPQLQS 61
Query: 103 ---EEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADG 159
++++N++H+ G I + + +++ L +G S + ++++ATG++ R + D
Sbjct: 62 VLPAHWWQENNVHLHSGVTIKTLGR-DTRELVLANGESWHWDQLFIATGAAARPLPLLDA 120
Query: 160 V-NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF 218
+ + F LR DA + + PE +VV++G+ IG+E AA + VTV+ A
Sbjct: 121 LGERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVM 180
Query: 219 QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 278
+ V + + + GV+ ++ + EK ++T L +G T+ AD+VI GI
Sbjct: 181 GRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVDGEKVELT---LQSGETLQADVVIYGI 237
Query: 279 GTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGH-- 336
G N + L+ +V++E T P ++AGGD+A L N ++
Sbjct: 238 GISANDQL--AREANLDTTNGIVIDEACRTCDPAIFAGGDVAITRL-----DNGALHRCE 290
Query: 337 -YQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRFAGYAAG 381
++ A H +IAA M+ L P+FW+ + +F G G
Sbjct: 291 SWENANNHAQIAAAAMLGLPLPLLPPPWFWSDQYSDNLQFIGDMRG 336
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Part of the multicomponent 3-phenylpropionate dioxygenase, that converts 3-phenylpropionic acid (PP) and cinnamic acid (CI) into 3-phenylpropionate-dihydrodiol (PP-dihydrodiol) and cinnamic acid-dihydrodiol (CI-dihydrodiol), respectively. Escherichia coli O157:H7 (strain EC4115 / EHEC) (taxid: 444450) EC: 1 EC: . EC: 1 EC: 8 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q8XA71|HCAD_ECO57 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin--NAD(+) reductase component OS=Escherichia coli O157:H7 GN=hcaD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 100/346 (28%), Positives = 176/346 (50%), Gaps = 19/346 (5%)
Query: 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRT 102
+ T I+VGGG + A +LRQ GFTG+L+ +DE LPY+R LSK + ++ DS L++
Sbjct: 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDEQHLPYERPPLSKSMLLE-DSPQLQS 61
Query: 103 ---EEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADG 159
++++N++H+ G I + + +++ L +G S + ++++ATG++ R + D
Sbjct: 62 VLPAHWWQENNVHLHSGVTIKTLGR-DTRELVLANGESWHWDQLFIATGAAARPLPLLDA 120
Query: 160 V-NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF 218
+ + F LR DA + + PE +VV++G+ IG+E AA + VTV+ A
Sbjct: 121 LGERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVM 180
Query: 219 QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 278
+ V + + + GV+ ++ + EK ++T L +G T+ AD+VI GI
Sbjct: 181 GRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVDGEKVELT---LQSGETLQADVVIYGI 237
Query: 279 GTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGH-- 336
G N + L+ +V++E T P ++AGGD+A L N ++
Sbjct: 238 GISANDQL--AREANLDTTNGIVIDEACRTCDPAIFAGGDVAITRL-----DNGALHRCE 290
Query: 337 -YQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRFAGYAAG 381
++ A H +IAA M+ L P+FW+ + +F G G
Sbjct: 291 SWENANNHAQIAAAAMLGLPLPLLPPPWFWSDQYSDNLQFIGDMRG 336
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Part of the multicomponent 3-phenylpropionate dioxygenase, that converts 3-phenylpropionic acid (PP) and cinnamic acid (CI) into 3-phenylpropionate-dihydrodiol (PP-dihydrodiol) and cinnamic acid-dihydrodiol (CI-dihydrodiol), respectively. Escherichia coli O157:H7 (taxid: 83334) EC: 1 EC: . EC: 1 EC: 8 EC: . EC: 1 EC: . EC: 3 |
| >sp|P43494|THCD_RHOER Rhodocoxin reductase OS=Rhodococcus erythropolis GN=thcD PE=1 SV=2 | Back alignment and function description |
|---|
Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 101/373 (27%), Positives = 175/373 (46%), Gaps = 11/373 (2%)
Query: 45 TFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSK---QLDIKADSILLR 101
+ +++G G +G +LR +GF+G + + DE +PY R LSK D +S+ LR
Sbjct: 2 SIVIIGSGQAGFEAAVSLRSHGFSGTITLVGDEPGVPYQRPPLSKAYLHSDPDRESLALR 61
Query: 102 TEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN 161
+++ D+ I + GK ++ + + ++++L D T+I++ + LATG+ R + G N
Sbjct: 62 PAQYFDDHRITLTCGKPVVR-IDRDAQRVELIDATAIEYDHLILATGARNRLLP-VPGAN 119
Query: 162 --KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQ 219
V YLRT +A ++ + S++VVIG+ FIG+E AA K VTVV P
Sbjct: 120 LPGVHYLRTAGEAESLTSSMASCSSLVVIGAGFIGLEVAAAARKKGLDVTVVEAMDRPMA 179
Query: 220 ESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 279
+L + + GV + V + + ++G I AD V+VGIG
Sbjct: 180 RALSSVMSGYFSTAHTEHGVHMRLSTGVKTINAADGR-AAGVTTNSGDVIHADAVVVGIG 238
Query: 280 TVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQL 339
V N G+ ++ +VV+EYL T + A GD A P+ + Q
Sbjct: 239 VVPNIELAALTGLPVD--NGIVVDEYLRTPDENISAIGDCAAYPIPGKAGL-VRLESVQN 295
Query: 340 AQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLEALKFTAY 399
A R A + T ++P+FW+ + + AG AG + G +++ F+ +
Sbjct: 296 AVDQARCLAAQLTGTSTHYRSVPWFWSEQYESKLQMAGLTAGADTHVVRGSVDSGVFSIF 355
Query: 400 YSNADKVLAILTV 412
++L + +V
Sbjct: 356 CFLGTRLLGVESV 368
|
The degradation of the thiocarbamate herbicide EPTC by cytochrome CYP116 (thcB) requires the participation of a flavoprotein, rhodocoxin reductase, and an iron-sulfur protein, rhodocoxin, to mediate the transfer of electrons from NADH to P450 for oxygen activation. Rhodococcus erythropolis (taxid: 1833) EC: 1 EC: . EC: 1 EC: 8 EC: . EC: 1 EC: . EC: - |
| >sp|B1LNJ8|HCAD_ECOSM 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin--NAD(+) reductase component OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=hcaD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 96/342 (28%), Positives = 172/342 (50%), Gaps = 19/342 (5%)
Query: 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRT 102
+ T I+VGGG + A +LRQ GFTG+L+ +DE LPY+R LSK + ++ DS L++
Sbjct: 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDEQHLPYERPPLSKSMLLE-DSPQLQS 61
Query: 103 ---EEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADG 159
++++N++H+ G I + + +++ L +G S + ++++ATG++ R + D
Sbjct: 62 VLPAHWWQENNVHLHSGVTIKTLGR-DTRELVLANGESWHWDQLFIATGAAARPLPLLDA 120
Query: 160 V-NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF 218
+ + F LR DA + + PE +VV++G+ IG+E AA + VTV+ A
Sbjct: 121 LGERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRGCKVTVIELAATVM 180
Query: 219 QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 278
+ V + + + GV+ ++ + E ++T L +G T+ AD+VI GI
Sbjct: 181 GRNAPPPVQHYLLQRHQQAGVRILLNNAIEHVVDGENVELT---LQSGETLRADVVIYGI 237
Query: 279 GTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGH-- 336
G N + L+ +V++E T P ++AGGD+A L N ++
Sbjct: 238 GISANDQL--AREANLDTANGIVIDEACRTCDPAIFAGGDVAITRL-----DNGALHRCE 290
Query: 337 -YQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRFAG 377
++ A +IAA M+ P+FW+ + +F G
Sbjct: 291 SWENANNQAQIAASAMLGLPLPRLPPPWFWSDQYSDNLQFIG 332
|
Part of the multicomponent 3-phenylpropionate dioxygenase, that converts 3-phenylpropionic acid (PP) and cinnamic acid (CI) into 3-phenylpropionate-dihydrodiol (PP-dihydrodiol) and cinnamic acid-dihydrodiol (CI-dihydrodiol), respectively. Escherichia coli (strain SMS-3-5 / SECEC) (taxid: 439855) EC: 1 EC: . EC: 1 EC: 8 EC: . EC: 1 EC: . EC: 3 |
| >sp|B7N6C9|HCAD_ECOLU 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin--NAD(+) reductase component OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=hcaD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 85/285 (29%), Positives = 150/285 (52%), Gaps = 9/285 (3%)
Query: 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRT 102
+ T I+VGGG + A +LRQ GFTG+L+ +DE LPY+R LSK + ++ L +
Sbjct: 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQV 62
Query: 103 --EEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGV 160
++++N++H+ G I S + +++ L +G S + ++++ATG++ R + D +
Sbjct: 63 LPANWWQENNVHLHSGVTIKSLGR-DTRELVLTNGESWQWDQLFMATGAAARPLPLLDAL 121
Query: 161 -NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQ 219
+ F LR +DA + + PE +VV++G+ IG+E AA + VTV+ A
Sbjct: 122 GERCFTLRHADDAARLREVLQPERSVVIVGAGTIGLELAASATQRGCKVTVIELAATVMG 181
Query: 220 ESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 279
+ V + + + GV+ ++ + EK ++T L +G T+ AD+VI GIG
Sbjct: 182 RNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVDGEKVELT---LQSGETLQADVVIYGIG 238
Query: 280 TVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPL 324
N + L+ +V++E T P ++AGGD+A L
Sbjct: 239 ISANDQL--AREANLDTANGIVIDEACRTCDPAIFAGGDVAITRL 281
|
Part of the multicomponent 3-phenylpropionate dioxygenase, that converts 3-phenylpropionic acid (PP) and cinnamic acid (CI) into 3-phenylpropionate-dihydrodiol (PP-dihydrodiol) and cinnamic acid-dihydrodiol (CI-dihydrodiol), respectively. Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) (taxid: 585056) EC: 1 EC: . EC: 1 EC: 8 EC: . EC: 1 EC: . EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1466 | ||||||
| 312374349 | 576 | hypothetical protein AND_16041 [Anophele | 0.331 | 0.843 | 0.496 | 1e-139 | |
| 347970885 | 566 | AGAP003904-PB [Anopheles gambiae str. PE | 0.329 | 0.853 | 0.497 | 1e-138 | |
| 347970887 | 553 | AGAP003904-PA [Anopheles gambiae str. PE | 0.329 | 0.873 | 0.497 | 1e-138 | |
| 157128489 | 567 | disulfide oxidoreductase [Aedes aegypti] | 0.330 | 0.853 | 0.492 | 1e-138 | |
| 157128491 | 556 | disulfide oxidoreductase [Aedes aegypti] | 0.330 | 0.870 | 0.492 | 1e-137 | |
| 170058490 | 547 | disulfide oxidoreductase [Culex quinquef | 0.330 | 0.886 | 0.481 | 1e-137 | |
| 195447790 | 594 | GK25759 [Drosophila willistoni] gi|19416 | 0.331 | 0.818 | 0.489 | 1e-134 | |
| 242013339 | 562 | rubredoxin-NAD reductase, putative [Pedi | 0.324 | 0.846 | 0.496 | 1e-132 | |
| 328702451 | 564 | PREDICTED: apoptosis-inducing factor 3-l | 0.328 | 0.854 | 0.484 | 1e-132 | |
| 328702453 | 549 | PREDICTED: apoptosis-inducing factor 3-l | 0.328 | 0.877 | 0.484 | 1e-132 |
| >gi|312374349|gb|EFR21922.1| hypothetical protein AND_16041 [Anopheles darlingi] | Back alignment and taxonomy information |
|---|
Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust.
Identities = 244/491 (49%), Positives = 333/491 (67%), Gaps = 5/491 (1%)
Query: 978 IYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQND 1037
+ A+G KCSHYGA LV G+LGDGRVRCPWHGACFN+ TGDIEDFPGMDSLPCY+VT+
Sbjct: 77 LTAIGNKCSHYGAMLVTGALGDGRVRCPWHGACFNVETGDIEDFPGMDSLPCYRVTVGEG 136
Query: 1038 DSVVVQARKDELKNKKRKLPMAKL-SSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYF 1096
V V+A++ EL KR MA+ S+ ++ TF+V+GGGPSGATC ETLRQ GFTG++
Sbjct: 137 GEVRVRAKRSELATNKRTRLMARRGSASDERTFVVIGGGPSGATCAETLRQEGFTGRVVM 196
Query: 1097 ITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQ 1156
I E +LPYDR+K+SK +D+ + +LLRT+ FY +DI ++ G + + + K++ L
Sbjct: 197 INKEPYLPYDRIKVSKTMDLSVEKVLLRTQAFYDGSDIELLLGTAV-TKLDSTGKELTLD 255
Query: 1157 DGTSIDFTKIYLATGSSPRTIS-QADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSF 1215
+G I + K+Y+ATGS+PR + + V LRTV+DA ++ ++PE VV++G+SF
Sbjct: 256 NGYKIKYDKVYIATGSNPRRPPIEGANLRNVAVLRTVDDAKSVNGELSPEKQVVILGTSF 315
Query: 1216 IGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEK 1275
IG+EAAA+C KV VTV+GRGAVP +ES G +G+R+ LF KGV+FVM + + +
Sbjct: 316 IGLEAAAYCVGKVARVTVIGRGAVPLKESFGDAIGQRVMDLFHEKGVEFVMNSGIKRCIE 375
Query: 1276 NEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPG 1335
E V L +GT + AD+ I G+G+ L T +L GV LN ++ +++LET + G
Sbjct: 376 GEAGAVKQVELVDGTLLNADICIFGVGSTLYTEFLAESGVPLNRNGSINTDQHLETEMQG 435
Query: 1336 VYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVG 1395
VYAGGD+A +P+ S + A+IGHY LAQYHGRIAALNMV K T L T+PFFWT+LFG
Sbjct: 436 VYAGGDVANSPVLSNEGRPATIGHYPLAQYHGRIAALNMVGKATPLQTVPFFWTVLFGKS 495
Query: 1396 FRFAGYAAGHTQVDIVGDLEALKFTAYY-SNADKVLAILTVGMDPLAAQFAERIKMQKYI 1454
FR+ GY +V + GDLEALKF A+Y A +V+A+ + DP+ AQFAE K +
Sbjct: 496 FRYCGYGTPE-EVIVDGDLEALKFVAFYIGKAGRVIAMASCQRDPIVAQFAEFSSQGKVL 554
Query: 1455 QKDQIENNAWA 1465
K I N +
Sbjct: 555 NKSDITTNPFG 565
|
Source: Anopheles darlingi Species: Anopheles darlingi Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|347970885|ref|XP_003436656.1| AGAP003904-PB [Anopheles gambiae str. PEST] gi|333466418|gb|EGK96235.1| AGAP003904-PB [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 501 bits (1290), Expect = e-138, Method: Compositional matrix adjust.
Identities = 245/492 (49%), Positives = 329/492 (66%), Gaps = 9/492 (1%)
Query: 978 IYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQND 1037
+ A+G KCSHYGA LV G+LG+GRVRCPWHGACFN+ TGDIEDFPGMDSLPCY+VT+
Sbjct: 76 LSAIGNKCSHYGAMLVTGALGEGRVRCPWHGACFNVETGDIEDFPGMDSLPCYRVTVGEA 135
Query: 1038 DSVVVQARKDELKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFI 1097
V V+A++ EL KR MAK ++ + T++V+GGGPSGATC ETLRQ GFTG++ I
Sbjct: 136 GEVKVRAKRTELATNKRTRVMAKRAAQDARTYVVIGGGPSGATCAETLRQEGFTGRIVMI 195
Query: 1098 TDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQ 1156
E LPYDRVK+SK +D+ + +LLRT++FY +NDI V+ G + D +E + L
Sbjct: 196 NKEPCLPYDRVKVSKTMDLNLEKVLLRTQQFYDENDIEVMLGTAVTKLDGATHE--LTLD 253
Query: 1157 DGTSIDFTKIYLATGSSPRTIS-QADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSF 1215
+G I + K Y+ATGS+PR + + V LRT DA + + PE VV++G+SF
Sbjct: 254 NGYKIRYDKAYIATGSNPRRPPIEGASLGNVCVLRTAADAKQVNEQLAPEKRVVILGTSF 313
Query: 1216 IGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEK 1275
IG+EAAA+C +KV VTV+GRGAVP +ES G +G+R+ +LFE KGV+FVM + +
Sbjct: 314 IGLEAAAYCVNKVAKVTVIGRGAVPLKESFGDAIGQRVMELFEEKGVQFVMNSGIRRCIG 373
Query: 1276 NEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPG 1335
E V L +GT + AD+ I GIG+ L T +L G G+ LN ++ ++YLE+N+ G
Sbjct: 374 AE-GAVQQVELTDGTLLDADICIFGIGSTLYTEFLQGSGISLNRNGSINTDQYLESNLEG 432
Query: 1336 VYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVG 1395
VY GGDIA AP+HS + A+IGHY LAQYHGR+AALNM+ K T L +PFFWT+LFG
Sbjct: 433 VYVGGDIANAPVHSNDGQQATIGHYPLAQYHGRVAALNMIGKATPLKAVPFFWTVLFGKS 492
Query: 1396 FRFAGYAAGHTQVDIVGDLEALKFTAYY-SNADKVLAILTVGMDPLAAQFAERIKMQKYI 1454
FR+ GY +V I GDL ALKF A+Y +V+ + + DP+ AQFAE K +
Sbjct: 493 FRYCGYGQ-PDEVIIDGDLAALKFVAFYIGKGGRVIGMSSCQRDPVVAQFAEYSSQGKVL 551
Query: 1455 QKDQIENN--AW 1464
K+ + N +W
Sbjct: 552 HKEDLTPNPLSW 563
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|347970887|ref|XP_308137.4| AGAP003904-PA [Anopheles gambiae str. PEST] gi|333466417|gb|EAA03876.4| AGAP003904-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 500 bits (1288), Expect = e-138, Method: Compositional matrix adjust.
Identities = 245/492 (49%), Positives = 329/492 (66%), Gaps = 9/492 (1%)
Query: 978 IYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQND 1037
+ A+G KCSHYGA LV G+LG+GRVRCPWHGACFN+ TGDIEDFPGMDSLPCY+VT+
Sbjct: 63 LSAIGNKCSHYGAMLVTGALGEGRVRCPWHGACFNVETGDIEDFPGMDSLPCYRVTVGEA 122
Query: 1038 DSVVVQARKDELKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFI 1097
V V+A++ EL KR MAK ++ + T++V+GGGPSGATC ETLRQ GFTG++ I
Sbjct: 123 GEVKVRAKRTELATNKRTRVMAKRAAQDARTYVVIGGGPSGATCAETLRQEGFTGRIVMI 182
Query: 1098 TDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQ 1156
E LPYDRVK+SK +D+ + +LLRT++FY +NDI V+ G + D +E + L
Sbjct: 183 NKEPCLPYDRVKVSKTMDLNLEKVLLRTQQFYDENDIEVMLGTAVTKLDGATHE--LTLD 240
Query: 1157 DGTSIDFTKIYLATGSSPRTIS-QADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSF 1215
+G I + K Y+ATGS+PR + + V LRT DA + + PE VV++G+SF
Sbjct: 241 NGYKIRYDKAYIATGSNPRRPPIEGASLGNVCVLRTAADAKQVNEQLAPEKRVVILGTSF 300
Query: 1216 IGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEK 1275
IG+EAAA+C +KV VTV+GRGAVP +ES G +G+R+ +LFE KGV+FVM + +
Sbjct: 301 IGLEAAAYCVNKVAKVTVIGRGAVPLKESFGDAIGQRVMELFEEKGVQFVMNSGIRRCIG 360
Query: 1276 NEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPG 1335
E V L +GT + AD+ I GIG+ L T +L G G+ LN ++ ++YLE+N+ G
Sbjct: 361 AE-GAVQQVELTDGTLLDADICIFGIGSTLYTEFLQGSGISLNRNGSINTDQYLESNLEG 419
Query: 1336 VYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVG 1395
VY GGDIA AP+HS + A+IGHY LAQYHGR+AALNM+ K T L +PFFWT+LFG
Sbjct: 420 VYVGGDIANAPVHSNDGQQATIGHYPLAQYHGRVAALNMIGKATPLKAVPFFWTVLFGKS 479
Query: 1396 FRFAGYAAGHTQVDIVGDLEALKFTAYY-SNADKVLAILTVGMDPLAAQFAERIKMQKYI 1454
FR+ GY +V I GDL ALKF A+Y +V+ + + DP+ AQFAE K +
Sbjct: 480 FRYCGYGQ-PDEVIIDGDLAALKFVAFYIGKGGRVIGMSSCQRDPVVAQFAEYSSQGKVL 538
Query: 1455 QKDQIENN--AW 1464
K+ + N +W
Sbjct: 539 HKEDLTPNPLSW 550
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157128489|ref|XP_001661452.1| disulfide oxidoreductase [Aedes aegypti] gi|108872564|gb|EAT36789.1| AAEL011158-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 242/491 (49%), Positives = 341/491 (69%), Gaps = 7/491 (1%)
Query: 978 IYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQND 1037
+ A+G KCSHYGA L G+LG+GRVRCPWHGACFNI TGDIEDFPG DSLPC+KVT++
Sbjct: 78 LSAIGNKCSHYGALLSTGALGEGRVRCPWHGACFNIETGDIEDFPGQDSLPCFKVTVEQG 137
Query: 1038 DSVVVQARKDELKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFI 1097
V ++A++ EL++ KR M K ++ TF+V+GGGPSGA C E LRQ GFTG++ I
Sbjct: 138 -RVKIRAKRSELQSGKRTKAMVKKEKEDERTFVVIGGGPSGAICAEALRQEGFTGRVIMI 196
Query: 1098 TDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQD 1157
E LPYDR+ +SK +D + LLR E+FY +++I + G ++ S + N +++ L +
Sbjct: 197 NKEPCLPYDRILVSKTMDFDLEKKLLRDEKFYAEHEIETMIGTEVTSLNSAN-RELTLSN 255
Query: 1158 GTSIDFTKIYLATGSSPRT--ISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSF 1215
G I + K+Y+ATGS R I AD N V LR+ E + ++ ++P+ +VVV+G SF
Sbjct: 256 GYKIKYDKVYIATGSEARKAPIEGADMPN-VCVLRSNEHSKHVNGQLSPDKHVVVLGVSF 314
Query: 1216 IGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEK 1275
IG+EAAA+C +KV VTV+GRGAVP ES G++VG ++ + F+ KGV F+M + +
Sbjct: 315 IGLEAAAYCVNKVAKVTVIGRGAVPLVESFGEQVGSKVMQWFKEKGVHFIMNSGIKRCIG 374
Query: 1276 NEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPG 1335
++ +T+ L++GT + ADL I+GIG+ L T +L+G GV++N +V N +LETNVPG
Sbjct: 375 DDDRKLTSVELNDGTILKADLCIMGIGSTLFTTFLEGSGVKVNKGGSVDTNRFLETNVPG 434
Query: 1336 VYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVG 1395
+YAGGDIA+AP+ N+ A+IGHY LAQYHG++AALNMV K T L ++P+FWTMLFG G
Sbjct: 435 IYAGGDIAHAPVFCNNNEPATIGHYPLAQYHGKVAALNMVGKATELKSVPYFWTMLFGKG 494
Query: 1396 FRFAGYAAGHTQVDIVGDLEALKFTAYYSNAD-KVLAILTVGMDPLAAQFAERIKMQKYI 1454
FR+AGY H + I GDLE LKF A+Y +A+ KV+ + + G DP+ +QFAE + K
Sbjct: 495 FRYAGYGRPHETI-IEGDLEQLKFVAFYLDANGKVIGMASCGRDPVVSQFAEYLSQGKTF 553
Query: 1455 QKDQIENNAWA 1465
KDQ+ + +A
Sbjct: 554 HKDQLSPDPFA 564
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157128491|ref|XP_001661453.1| disulfide oxidoreductase [Aedes aegypti] gi|403183173|gb|EJY57905.1| AAEL011158-PB [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 498 bits (1282), Expect = e-137, Method: Compositional matrix adjust.
Identities = 242/491 (49%), Positives = 341/491 (69%), Gaps = 7/491 (1%)
Query: 978 IYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQND 1037
+ A+G KCSHYGA L G+LG+GRVRCPWHGACFNI TGDIEDFPG DSLPC+KVT++
Sbjct: 67 LSAIGNKCSHYGALLSTGALGEGRVRCPWHGACFNIETGDIEDFPGQDSLPCFKVTVEQG 126
Query: 1038 DSVVVQARKDELKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFI 1097
V ++A++ EL++ KR M K ++ TF+V+GGGPSGA C E LRQ GFTG++ I
Sbjct: 127 -RVKIRAKRSELQSGKRTKAMVKKEKEDERTFVVIGGGPSGAICAEALRQEGFTGRVIMI 185
Query: 1098 TDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQD 1157
E LPYDR+ +SK +D + LLR E+FY +++I + G ++ S + N +++ L +
Sbjct: 186 NKEPCLPYDRILVSKTMDFDLEKKLLRDEKFYAEHEIETMIGTEVTSLNSAN-RELTLSN 244
Query: 1158 GTSIDFTKIYLATGSSPRT--ISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSF 1215
G I + K+Y+ATGS R I AD N V LR+ E + ++ ++P+ +VVV+G SF
Sbjct: 245 GYKIKYDKVYIATGSEARKAPIEGADMPN-VCVLRSNEHSKHVNGQLSPDKHVVVLGVSF 303
Query: 1216 IGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEK 1275
IG+EAAA+C +KV VTV+GRGAVP ES G++VG ++ + F+ KGV F+M + +
Sbjct: 304 IGLEAAAYCVNKVAKVTVIGRGAVPLVESFGEQVGSKVMQWFKEKGVHFIMNSGIKRCIG 363
Query: 1276 NEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPG 1335
++ +T+ L++GT + ADL I+GIG+ L T +L+G GV++N +V N +LETNVPG
Sbjct: 364 DDDRKLTSVELNDGTILKADLCIMGIGSTLFTTFLEGSGVKVNKGGSVDTNRFLETNVPG 423
Query: 1336 VYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVG 1395
+YAGGDIA+AP+ N+ A+IGHY LAQYHG++AALNMV K T L ++P+FWTMLFG G
Sbjct: 424 IYAGGDIAHAPVFCNNNEPATIGHYPLAQYHGKVAALNMVGKATELKSVPYFWTMLFGKG 483
Query: 1396 FRFAGYAAGHTQVDIVGDLEALKFTAYYSNAD-KVLAILTVGMDPLAAQFAERIKMQKYI 1454
FR+AGY H + I GDLE LKF A+Y +A+ KV+ + + G DP+ +QFAE + K
Sbjct: 484 FRYAGYGRPHETI-IEGDLEQLKFVAFYLDANGKVIGMASCGRDPVVSQFAEYLSQGKTF 542
Query: 1455 QKDQIENNAWA 1465
KDQ+ + +A
Sbjct: 543 HKDQLSPDPFA 553
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|170058490|ref|XP_001864945.1| disulfide oxidoreductase [Culex quinquefasciatus] gi|167877577|gb|EDS40960.1| disulfide oxidoreductase [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 498 bits (1281), Expect = e-137, Method: Compositional matrix adjust.
Identities = 237/492 (48%), Positives = 344/492 (69%), Gaps = 7/492 (1%)
Query: 977 NIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQN 1036
+ A+G +CSHYGA L G+LGDGRVRCPWHGACFN+ TGDIEDFPG DSLPC+KVT++N
Sbjct: 54 QLSAIGNRCSHYGAMLNNGALGDGRVRCPWHGACFNVLTGDIEDFPGQDSLPCFKVTVEN 113
Query: 1037 DDSVVVQARKDELKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYF 1096
V V+A++ EL++ KR M + ++ ++ TF+VVGGGPSGA C ETLRQ GFTG++
Sbjct: 114 G-KVKVRAKRSELQSGKRTRSMVRKTNDDERTFVVVGGGPSGAICAETLRQEGFTGRVVM 172
Query: 1097 ITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQ 1156
I E LPYDR+ +SK +D + LLR E+FY+ N+I + ++ + + ++++ L
Sbjct: 173 INKEPCLPYDRILVSKTMDFELQKKLLRDEKFYEQNEIETMTSTEVTAVNS-KDRELSLS 231
Query: 1157 DGTSIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSS 1214
+G I + KIY+ATGS PR + DGV+ V+ LR+ +DA + + P+ +VVV+G S
Sbjct: 232 NGYKIRYDKIYIATGSKPRKPA-IDGVDLPSVYVLRSNDDAKAVNAELGPDKHVVVLGVS 290
Query: 1215 FIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFE 1274
FIG+EAAA+C +KV VTV+GRG+VP +ES G+EVG R+ ++F+ KGV+FVM + +
Sbjct: 291 FIGLEAAAYCVNKVAKVTVIGRGSVPLKESFGQEVGARVMEMFKEKGVEFVMNSGIKRCI 350
Query: 1275 KNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVP 1334
++ +T+ L + T + AD+ I+G+G+ L T++L+ G+ELN ++ N+YLE+NV
Sbjct: 351 GDDDKKLTSVELMDETIVKADICIMGVGSTLYTSFLENSGIELNQNGSIDTNQYLESNVA 410
Query: 1335 GVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGV 1394
G+Y GGDIA AP++ N+ A+IGHY LAQYHG+IAALNMV K+T L +P+FWTMLFG
Sbjct: 411 GIYVGGDIANAPVYCNNNELATIGHYPLAQYHGKIAALNMVGKQTELKAVPYFWTMLFGK 470
Query: 1395 GFRFAGYAAGHTQVDIVGDLEALKFTAYYSNAD-KVLAILTVGMDPLAAQFAERIKMQKY 1453
GFR+ GY H + I GDL+ L F A+Y +A+ KV+ + + G DP+ +QFAE + K
Sbjct: 471 GFRYTGYGMPHETI-IEGDLKQLSFVAFYLDAERKVIGMASCGRDPVVSQFAEFLSQGKT 529
Query: 1454 IQKDQIENNAWA 1465
+ DQ+ + +A
Sbjct: 530 LHADQLSPDPFA 541
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195447790|ref|XP_002071371.1| GK25759 [Drosophila willistoni] gi|194167456|gb|EDW82357.1| GK25759 [Drosophila willistoni] | Back alignment and taxonomy information |
|---|
Score = 488 bits (1255), Expect = e-134, Method: Compositional matrix adjust.
Identities = 244/498 (48%), Positives = 329/498 (66%), Gaps = 12/498 (2%)
Query: 977 NIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQN 1036
N+ AVG KC+HYGAPL G+LG GRVRCPWHGACFN+ TGDIEDFPG+DSLPCY V + +
Sbjct: 91 NLRAVGAKCTHYGAPLHTGALGKGRVRCPWHGACFNLETGDIEDFPGLDSLPCYNVQVSS 150
Query: 1037 DDSVVVQARKDELKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYF 1096
+ V+V+A++ +L+ KR M K + FIVVGGGPSGA C ETLRQ GFTG+L
Sbjct: 151 EGQVMVRAKRADLEKTKRLKNMVKRKPDDPRCFIVVGGGPSGAVCAETLRQEGFTGRLIL 210
Query: 1097 ITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELN--EKKIK 1154
+ EN+LPYDRVK+SK +++K D+I R E+FYK++DI V G +S +L+ +K++
Sbjct: 211 VARENYLPYDRVKISKAMNLKIDAIQFRDEKFYKEHDIEVFLG---VSADKLDTAQKELH 267
Query: 1155 LQDGTSIDFTKIYLATGSSP-RTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGS 1213
+G + + KI++ATG S R + V +R +D +I ITPE+ VV +GS
Sbjct: 268 CSNGLVVKYDKIFIATGCSAFRPAIPGIELGNVKTVREFDDCQSIMNLITPETRVVCLGS 327
Query: 1214 SFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSF 1273
SFI +EAAA SKV SVTVVGR VP + + G+++G+R+ KLFE V +M + ++
Sbjct: 328 SFIALEAAAALVSKVASVTVVGRDTVPLKAAFGEQIGQRVLKLFEDNKVTMIMSSGITQI 387
Query: 1274 EKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNV 1333
NE+N+V L + T +P DL+IVG G+ LNT +L GV LN +V V ++LE+NV
Sbjct: 388 IGNEENNVAEVQLADETRLPCDLLIVGTGSTLNTQFLANSGVRLNRNGSVDVTDFLESNV 447
Query: 1334 PGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFG 1393
P VY GGDIA A +H ++ +IGHYQLAQYHGRIAA+NM L +PFF+TM+FG
Sbjct: 448 PDVYVGGDIANAHIHGLTSERVTIGHYQLAQYHGRIAAINMSGSVKKLQAVPFFFTMIFG 507
Query: 1394 VGFRFAGYAAGHTQVDIVGDLEALKFTAYYSN-ADKVLAILTVGMDPLAAQFAERIKMQK 1452
G R+AG+ + V I G LE LKF AY+ N AD V+ + + G DP+ AQFAE + K
Sbjct: 508 KGIRYAGHGR-YKDVIIDGSLEDLKFIAYFVNEADTVIGVASCGRDPIVAQFAELLSQGK 566
Query: 1453 YIQKDQIEN----NAWAA 1466
+ + QIEN AW A
Sbjct: 567 CLGRAQIENEENRQAWTA 584
|
Source: Drosophila willistoni Species: Drosophila willistoni Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242013339|ref|XP_002427367.1| rubredoxin-NAD reductase, putative [Pediculus humanus corporis] gi|212511736|gb|EEB14629.1| rubredoxin-NAD reductase, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 480 bits (1236), Expect = e-132, Method: Compositional matrix adjust.
Identities = 242/487 (49%), Positives = 333/487 (68%), Gaps = 11/487 (2%)
Query: 978 IYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQND 1037
I A+GTKC+HYGAPLV G LGDGRVRC WHGACFNIA GDIEDFPG+DSLPCY+V + +
Sbjct: 81 ISALGTKCTHYGAPLVNGVLGDGRVRCQWHGACFNIANGDIEDFPGLDSLPCYEVEVSEE 140
Query: 1038 DSVVVQARKDELKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFI 1097
+V V+A K L+ KR P + TF+V GGG +GA CVETLRQ GF G++ F+
Sbjct: 141 GNVKVRADKQLLQANKRVKPFVRTLKAKTLTFMVAGGGAAGANCVETLRQEGFEGRIIFV 200
Query: 1098 TDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNE--KKIKL 1155
EN+LPYDR+K+SK LD+ A+ ILLR+ EFY++ +I ++ ++ +ELN K L
Sbjct: 201 IGENYLPYDRIKISKSLDVDAEKILLRSAEFYRERNIELMMNTQL---TELNPRGKLATL 257
Query: 1156 QDGTSIDFTKIYLATGSSPRTI-SQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSS 1214
+G I + KI+LATGS+PR + + + +F +RT++D I +T +S VV++G+S
Sbjct: 258 SNGQQIQYDKIFLATGSTPRKLCTTGSHLKNIFVIRTIDDGKEIMKVLTKDSKVVILGTS 317
Query: 1215 FIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFE 1274
FIGMEAAAFC+ K KSV VVGR PF+ SLG+ +G+R+ +LFE V F + + FE
Sbjct: 318 FIGMEAAAFCSGKAKSVVVVGRNK-PFKMSLGEVIGDRVMRLFEDNKVTFRLNQTIEKFE 376
Query: 1275 KNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVP 1334
E +T L +G+ + D+ I+GIG NT+YL + ++L A+ VNEYL++
Sbjct: 377 -GENGTLTGIELSDGSKLECDICIIGIGVTSNTDYLKPETMKLGKNNAIDVNEYLQSQYS 435
Query: 1335 GVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGV 1394
VYAGGDIA AP+ + A+IGH+ LA YHG IAALNM+EKK L+ +PFFWTML+G
Sbjct: 436 DVYAGGDIAIAPV---LGQKANIGHWGLANYHGHIAALNMLEKKKPLNAVPFFWTMLYGK 492
Query: 1395 GFRFAGYAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTVGMDPLAAQFAERIKMQKYI 1454
GFR+AGYA+ + V I G++E KF A+Y + + VLA+ T+G DPLAA+FAE + K +
Sbjct: 493 GFRYAGYASSYDDVVIDGNVEDFKFIAFYCSGNNVLAVTTIGRDPLAAKFAEMLYEGKKL 552
Query: 1455 QKDQIEN 1461
K++I+N
Sbjct: 553 SKNKIQN 559
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328702451|ref|XP_003241906.1| PREDICTED: apoptosis-inducing factor 3-like isoform 2 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust.
Identities = 236/487 (48%), Positives = 331/487 (67%), Gaps = 5/487 (1%)
Query: 979 YAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDD 1038
+AVG+KCSHYGAPLVKG+LG+G VRCPWHGACFN+ TGDIEDFPG+DS+P +KV++ N +
Sbjct: 69 FAVGSKCSHYGAPLVKGALGNGTVRCPWHGACFNLKTGDIEDFPGLDSIPSFKVSVTNGN 128
Query: 1039 SVVVQARKDELKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFIT 1098
V V A K L+N K P+ K + NK TFIV+G GP+G CVE LRQ G+ G+L I+
Sbjct: 129 -VKVSANKCALENAKFVKPLTKRNPENKCTFIVIGSGPAGTECVEKLRQEGYDGRLILIS 187
Query: 1099 DENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDG 1158
+ +LPYDR KLSK L+ + ILLR+ FY+ DI ++ K + + + K + L +
Sbjct: 188 KDAYLPYDRTKLSKALNSDVNGILLRSLPFYESGDIELLT-KTSVESIDTSTKVVYLSNN 246
Query: 1159 TSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGM 1218
+ F +++A+G +PR+ + + VF LRT+EDA+ I ++ + ++VV+GSSFIGM
Sbjct: 247 EQLTFDALFIASGMTPRSTPEVSKYDNVFTLRTIEDAHKIHQSLSSDCHLVVVGSSFIGM 306
Query: 1219 EAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEK 1278
E AA SKVKSV V+GR VPF+ESLGKE+GER+ +LFESKGV F MK +V ++
Sbjct: 307 ELAAATFSKVKSVHVIGRSDVPFKESLGKEIGERVQELFESKGVVFHMKTSVKNY-IGYN 365
Query: 1279 NDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVV-VNEYLETNVPGVY 1337
N ++ L +G + AD+ I+ G+ N +L G + +N + V++YLETNV G++
Sbjct: 366 NRLSEIELSDGQKLKADVCIMATGSKTNVEFLAGSNIAINSSNGTIEVDKYLETNVKGIF 425
Query: 1338 AGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFR 1397
AGGD+A AP++ N +S+GH+QLA YHG+IAAL M+ KKT + ++PFFWT LFG R
Sbjct: 426 AGGDVANAPVYP-SNIKSSLGHWQLATYHGKIAALQMLGKKTPIKSVPFFWTALFGTSIR 484
Query: 1398 FAGYAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTVGMDPLAAQFAERIKMQKYIQKD 1457
FAG+ G+T V I GDLE K YY ++V+A+ TVG DP+AAQFAE + + + K+
Sbjct: 485 FAGFNHGYTDVLINGDLENFKAVVYYCKGNEVVAVATVGSDPIAAQFAELLGSGRTLNKE 544
Query: 1458 QIENNAW 1464
Q +N W
Sbjct: 545 QAIDNKW 551
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328702453|ref|XP_001943210.2| PREDICTED: apoptosis-inducing factor 3-like isoform 1 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust.
Identities = 236/487 (48%), Positives = 331/487 (67%), Gaps = 5/487 (1%)
Query: 979 YAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDD 1038
+AVG+KCSHYGAPLVKG+LG+G VRCPWHGACFN+ TGDIEDFPG+DS+P +KV++ N +
Sbjct: 54 FAVGSKCSHYGAPLVKGALGNGTVRCPWHGACFNLKTGDIEDFPGLDSIPSFKVSVTNGN 113
Query: 1039 SVVVQARKDELKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFIT 1098
V V A K L+N K P+ K + NK TFIV+G GP+G CVE LRQ G+ G+L I+
Sbjct: 114 -VKVSANKCALENAKFVKPLTKRNPENKCTFIVIGSGPAGTECVEKLRQEGYDGRLILIS 172
Query: 1099 DENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDG 1158
+ +LPYDR KLSK L+ + ILLR+ FY+ DI ++ K + + + K + L +
Sbjct: 173 KDAYLPYDRTKLSKALNSDVNGILLRSLPFYESGDIELLT-KTSVESIDTSTKVVYLSNN 231
Query: 1159 TSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGM 1218
+ F +++A+G +PR+ + + VF LRT+EDA+ I ++ + ++VV+GSSFIGM
Sbjct: 232 EQLTFDALFIASGMTPRSTPEVSKYDNVFTLRTIEDAHKIHQSLSSDCHLVVVGSSFIGM 291
Query: 1219 EAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEK 1278
E AA SKVKSV V+GR VPF+ESLGKE+GER+ +LFESKGV F MK +V ++
Sbjct: 292 ELAAATFSKVKSVHVIGRSDVPFKESLGKEIGERVQELFESKGVVFHMKTSVKNY-IGYN 350
Query: 1279 NDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVV-VNEYLETNVPGVY 1337
N ++ L +G + AD+ I+ G+ N +L G + +N + V++YLETNV G++
Sbjct: 351 NRLSEIELSDGQKLKADVCIMATGSKTNVEFLAGSNIAINSSNGTIEVDKYLETNVKGIF 410
Query: 1338 AGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFR 1397
AGGD+A AP++ N +S+GH+QLA YHG+IAAL M+ KKT + ++PFFWT LFG R
Sbjct: 411 AGGDVANAPVYP-SNIKSSLGHWQLATYHGKIAALQMLGKKTPIKSVPFFWTALFGTSIR 469
Query: 1398 FAGYAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTVGMDPLAAQFAERIKMQKYIQKD 1457
FAG+ G+T V I GDLE K YY ++V+A+ TVG DP+AAQFAE + + + K+
Sbjct: 470 FAGFNHGYTDVLINGDLENFKAVVYYCKGNEVVAVATVGSDPIAAQFAELLGSGRTLNKE 529
Query: 1458 QIENNAW 1464
Q +N W
Sbjct: 530 QAIDNKW 536
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1466 | ||||||
| FB|FBgn0025628 | 665 | CG4199 [Drosophila melanogaste | 0.328 | 0.724 | 0.475 | 8.8e-118 | |
| UNIPROTKB|O42346 | 598 | O42346 "Nfrl" [Xenopus laevis | 0.328 | 0.806 | 0.421 | 1.2e-106 | |
| UNIPROTKB|Q96NN9 | 605 | AIFM3 "Apoptosis-inducing fact | 0.326 | 0.790 | 0.418 | 1.1e-102 | |
| MGI|MGI:1919418 | 605 | Aifm3 "apoptosis-inducing fact | 0.326 | 0.790 | 0.407 | 2.6e-101 | |
| UNIPROTKB|E1BMA9 | 598 | AIFM3 "Uncharacterized protein | 0.329 | 0.807 | 0.404 | 3.3e-101 | |
| UNIPROTKB|F1RKX7 | 604 | AIFM3 "Uncharacterized protein | 0.326 | 0.791 | 0.409 | 5.6e-100 | |
| UNIPROTKB|E1C3V0 | 551 | AIFM3 "Uncharacterized protein | 0.309 | 0.822 | 0.429 | 9.4e-100 | |
| ZFIN|ZDB-GENE-070112-2282 | 530 | zgc:158614 "zgc:158614" [Danio | 0.326 | 0.901 | 0.408 | 1.6e-99 | |
| FB|FBgn0032754 | 539 | CG10700 [Drosophila melanogast | 0.328 | 0.892 | 0.431 | 4.3e-98 | |
| UNIPROTKB|F1PQP3 | 605 | AIFM3 "Uncharacterized protein | 0.325 | 0.788 | 0.404 | 2.5e-97 |
| FB|FBgn0025628 CG4199 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1160 (413.4 bits), Expect = 8.8e-118, P = 8.8e-118
Identities = 233/490 (47%), Positives = 324/490 (66%)
Query: 978 IYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQND 1037
+ AVG KC+HYGAPL G+LG GRVRCPWHGACFN+ GDIEDFPG+DSLPCY+V + N+
Sbjct: 163 LLAVGAKCTHYGAPLQTGALGLGRVRCPWHGACFNLENGDIEDFPGLDSLPCYRVEVGNE 222
Query: 1038 DSVVVQARKDELKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFI 1097
V+++A++ +L N KR M + ++ FIVVGGGPSGA VET+RQ GFTG+L F+
Sbjct: 223 GQVMLRAKRSDLVNNKRLKNMVRRKPDDQRVFIVVGGGPSGAVAVETIRQEGFTGRLIFV 282
Query: 1098 TDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDS-ELNEKKIKLQ 1156
E++LPYDRVK+SK ++++ + + R EEFYK+ DI + +G + ++ + +K++
Sbjct: 283 CREDYLPYDRVKISKAMNLEIEQLRFRDEEFYKEYDIELWQG--VAAEKLDTAQKELHCS 340
Query: 1157 DGTSIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSS 1214
+G + + KIYLATG S GVN V +R + D I ITPES VV +GSS
Sbjct: 341 NGYVVKYDKIYLATGCSAFR-PPIPGVNLENVRTVRELADTKAILASITPESRVVCLGSS 399
Query: 1215 FIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFE 1274
FI +EAAA SKV+SVTVVGR VP + + G E+G+R+ +LFE V M++ ++
Sbjct: 400 FIALEAAAGLVSKVQSVTVVGRENVPLKAAFGAEIGQRVLQLFEDNKVVMRMESGIAEIV 459
Query: 1275 KNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVP 1334
NE V+ L + T +P DL+I+G G+ LNT +L GV++N +V V ++LE+NVP
Sbjct: 460 GNEDGKVSEVVLVDDTRLPCDLLILGTGSKLNTQFLAKSGVKVNRNGSVDVTDFLESNVP 519
Query: 1335 GVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGV 1394
VY GGDIA A +H + +IGHYQLAQYHGR+AA+NM L +PFF+T++FG
Sbjct: 520 DVYVGGDIANAHIHGLAHDRVNIGHYQLAQYHGRVAAINMCGGVKKLEAVPFFFTLIFGK 579
Query: 1395 GFRFAGYAAGHTQVDIVGDLEALKFTAYYSN-ADKVLAILTVGMDPLAAQFAERIKMQKY 1453
G R+AG+ + + V I G +E KF AY+ N AD V A+ + G DP+ AQFAE I K
Sbjct: 580 GIRYAGHGS-YKDVIIDGSMEDFKFVAYFINEADTVTAVASCGRDPIVAQFAELISQGKC 638
Query: 1454 IQKDQIENNA 1463
+ + QIE+ A
Sbjct: 639 LGRGQIEDPA 648
|
|
| UNIPROTKB|O42346 O42346 "Nfrl" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 1055 (376.4 bits), Expect = 1.2e-106, P = 1.2e-106
Identities = 208/494 (42%), Positives = 314/494 (63%)
Query: 979 YAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDD 1038
YA+G KC HYGAPLVKG L GRVRCPWHGACFNIATGDIEDFPG+D LP ++V I+ +
Sbjct: 103 YAMGHKCPHYGAPLVKGVLSKGRVRCPWHGACFNIATGDIEDFPGLDGLPKFQVKIEKE- 161
Query: 1039 SVVVQARKDELKNKKRKLPMAK-LSSGNKDTFI----VVGGGPSGATCVETLRQNGFTGK 1093
V ++A K L +++R MAK ++ N T I ++G GP+G C ETLRQ GF+ +
Sbjct: 162 RVYIRASKQALLSQRRTKVMAKCIALSNYSTAITNILIIGAGPAGLVCAETLRQEGFSDR 221
Query: 1094 LYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKI 1153
+ T E LPYDR KLSK +D +A+ I LR++EF+ DI V+ +++S N K +
Sbjct: 222 IVMCTSEKNLPYDRSKLSKSMDSQAEQIFLRSKEFFHTYDIEVLTETQVVSVDTKN-KIV 280
Query: 1154 KLQDGTSIDFTKIYLATGSSPRTIS-QADGVNKVFYLRTVEDANNIAPHITPESNVVVIG 1212
+DG +++ K+ +ATGS+P+T++ + ++ V +RT EDAN + + N V++G
Sbjct: 281 MFKDGFRMEYNKLLIATGSTPKTLTCKGKELDNVITIRTPEDANKVV-RLASSKNAVIVG 339
Query: 1213 SSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSS 1272
+SF+GME AA+ K SV+VV +PF++ LG++VG I K+FE+ VKF M+ VS
Sbjct: 340 ASFLGMEVAAYLCEKAHSVSVVELENIPFKKFLGEKVGLAIMKMFENNRVKFYMQTEVSE 399
Query: 1273 FEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETN 1332
+ E + L +G + AD+ ++GIG T +L GV L+ + + VN+ ++TN
Sbjct: 400 LREQE-GKLKEVVLKSGKVLRADVCVIGIGASPTTGFLKQSGVALDSRGYIPVNKMMQTN 458
Query: 1333 VPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLF 1392
+PGV+A GD+ PL NK ++ H+Q+A GRIAALNM+ + T ++T+P+ WT +F
Sbjct: 459 IPGVFAAGDVVTFPLAFRNNKKMNVPHWQMAHMQGRIAALNMLAQGTEINTVPYLWTAMF 518
Query: 1393 GVGFRFAGYAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTVGMDPLAAQFAERIKMQK 1452
G R+AG+ G V I GD++ LKF A+Y+ D+V+A+ ++ DP+ ++ AE + K
Sbjct: 519 GKSIRYAGHGEGFDDVIIQGDIDELKFVAFYTRNDEVIAVASMNYDPIVSKVAEIMASGK 578
Query: 1453 YIQKDQIENN--AW 1464
I+K +E +W
Sbjct: 579 TIRKRDVETGDISW 592
|
|
| UNIPROTKB|Q96NN9 AIFM3 "Apoptosis-inducing factor 3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1021 (364.5 bits), Expect = 1.1e-102, P = 1.1e-102
Identities = 204/488 (41%), Positives = 308/488 (63%)
Query: 979 YAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDD 1038
+A+G KC HYGAPLVKG L GRVRCPWHGACFNI+TGD+EDFPG+DSL ++V I+ +
Sbjct: 103 HALGHKCPHYGAPLVKGVLSRGRVRCPWHGACFNISTGDLEDFPGLDSLHKFQVKIEKE- 161
Query: 1039 SVVVQARKDELKNKKRKLPMAKL---SSG--NKDTFIVVGGGPSGATCVETLRQNGFTGK 1093
V V+A K L+ ++R MAK S+G + ++VG G +G C ETLRQ GF+ +
Sbjct: 162 KVYVRASKQALQLQRRTKVMAKCISPSAGYSSSTNVLIVGAGAAGLVCAETLRQEGFSDR 221
Query: 1094 LYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKI 1153
+ T + LPYDR KLSK LD + + + LR +EF++ I V+ ++++ ++ KK+
Sbjct: 222 IVLCTLDRHLPYDRPKLSKSLDTQPEQLALRPKEFFRAYGIEVLTEAQVVT-VDVRTKKV 280
Query: 1154 KLQDGTSIDFTKIYLATGSSPRTIS-QADGVNKVFYLRTVEDANNIAPHITPESNVVVIG 1212
+DG ++++K+ LA GSSP+T+S + V VF +RT EDAN + + NVVV+G
Sbjct: 281 VFKDGFKLEYSKLLLAPGSSPKTLSCKGKEVENVFTIRTPEDANRVV-RLARGRNVVVVG 339
Query: 1213 SSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSS 1272
+ F+GME AA+ K SV+VV PF+ LG+ VG + K+FE+ VKF M+ VS
Sbjct: 340 AGFLGMEVAAYLTEKAHSVSVVELEETPFRRFLGERVGRALMKMFENNRVKFYMQTEVSE 399
Query: 1273 FEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETN 1332
+ ++ + L + + AD+ +VGIG V T +L G+ L+ + + VN+ ++TN
Sbjct: 400 L-RGQEGKLKEVVLKSSKVVRADVCVVGIGAVPATGFLRQSGIGLDSRGFIPVNKMMQTN 458
Query: 1333 VPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLF 1392
VPGV+A GD PL N+ +I H+Q+A GR+AA NM+ ++ +ST+P+ WT +F
Sbjct: 459 VPGVFAAGDAVTFPLAWRNNRKVNIPHWQMAHAQGRVAAQNMLAQEAEMSTVPYLWTAMF 518
Query: 1393 GVGFRFAGYAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTVGMDPLAAQFAERIKMQK 1452
G R+AGY G V I GDLE LKF A+Y+ D+V+A+ ++ DP+ ++ AE + +
Sbjct: 519 GKSLRYAGYGEGFDDVIIQGDLEELKFVAFYTKGDEVIAVASMNYDPIVSKVAEVLASGR 578
Query: 1453 YIQKDQIE 1460
I+K ++E
Sbjct: 579 AIRKREVE 586
|
|
| MGI|MGI:1919418 Aifm3 "apoptosis-inducing factor, mitochondrion-associated 3" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1009 (360.2 bits), Expect = 2.6e-101, P = 2.6e-101
Identities = 199/488 (40%), Positives = 307/488 (62%)
Query: 979 YAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDD 1038
+A+G KC HYGAPLVKG L GRVRCPWHGACFNI+TGD+EDFPG+DSL ++V I+ +
Sbjct: 103 HALGHKCPHYGAPLVKGVLSRGRVRCPWHGACFNISTGDLEDFPGLDSLHKFQVKIEKE- 161
Query: 1039 SVVVQARKDELKNKKRKLPMAKL---SSGNKDT--FIVVGGGPSGATCVETLRQNGFTGK 1093
V ++A K L+ ++R MAK S+G+ + ++VG G +G C ETLRQ GF+ +
Sbjct: 162 KVTIRASKQALQLQRRTKVMAKCISPSAGHSSSTNVLIVGAGAAGLVCAETLRQEGFSDR 221
Query: 1094 LYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKI 1153
+ T + LPYDR KLSK LD + + + LR +EF++ I ++ ++++ ++ KK+
Sbjct: 222 IVLCTLDRHLPYDRAKLSKSLDAQPEQLALRPKEFFRAYGIEMLTEAQVVT-VDVRNKKV 280
Query: 1154 KLQDGTSIDFTKIYLATGSSPRTIS-QADGVNKVFYLRTVEDANNIAPHITPESNVVVIG 1212
+DG ++++K+ LA GSSP+T++ + V VF +RT EDAN + + N VV+G
Sbjct: 281 VFKDGFKLEYSKLLLAPGSSPKTLTCKGKDVENVFTIRTPEDANRVL-RLARGRNAVVVG 339
Query: 1213 SSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSS 1272
+ F+GME AA+ K SV+VV PF+ LG+ VG + K+FE+ VKF M+ VS
Sbjct: 340 AGFLGMEVAAYLTEKAHSVSVVELEETPFRRFLGERVGRALMKMFENNRVKFYMQTEVSE 399
Query: 1273 FEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETN 1332
E + L + + AD+ ++GIG V T +L G+ L+ + + VN+ ++TN
Sbjct: 400 LRAQE-GKLQEVVLKSSKVLRADVCVLGIGAVPATGFLRQSGIGLDSRGFIPVNKMMQTN 458
Query: 1333 VPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLF 1392
VPGV+A GD PL N+ +I H+Q+A GR+AA NM+ ++ ++T+P+ WT +F
Sbjct: 459 VPGVFAAGDAVTFPLAWRNNRKVNIPHWQMAHAQGRVAAQNMLAQEAEINTVPYLWTAMF 518
Query: 1393 GVGFRFAGYAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTVGMDPLAAQFAERIKMQK 1452
G R+AGY G V I GDLE LKF A+Y+ +D+V+A+ ++ DP+ ++ AE + +
Sbjct: 519 GKSLRYAGYGEGFDDVIIQGDLEELKFVAFYTKSDEVIAVASMNYDPIVSKVAEVLASGR 578
Query: 1453 YIQKDQIE 1460
I+K ++E
Sbjct: 579 AIRKREVE 586
|
|
| UNIPROTKB|E1BMA9 AIFM3 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1008 (359.9 bits), Expect = 3.3e-101, P = 3.3e-101
Identities = 200/495 (40%), Positives = 306/495 (61%)
Query: 978 IYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQND 1037
++A+G KC HYGAPLVKG L GRVRCPWHGACFN++TGD+EDFPG+DSL ++V I+ +
Sbjct: 102 LHALGHKCPHYGAPLVKGVLSRGRVRCPWHGACFNVSTGDLEDFPGLDSLHKFQVKIEKE 161
Query: 1038 DSVVVQARKDELKNKKRKLPMAKL---SSG--NKDTFIVVGGGPSGATCVETLRQNGFTG 1092
V ++A K L+ ++R MA S+G ++VG G +G C ETLRQ GF+
Sbjct: 162 -KVYIRASKQALQLQRRTKVMATCISPSAGYSGSTNVLIVGAGAAGLVCAETLRQEGFSD 220
Query: 1093 KLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKK 1152
++ T + LPYDR KLSK LD + + + LR +EF++ + I V+ ++++ ++ KK
Sbjct: 221 RIVLCTLDRHLPYDRPKLSKSLDAQPEQLALRPKEFFRAHGIEVLTEAQVVT-VDVRNKK 279
Query: 1153 IKLQDGTSIDFTKIYLATGSSPRTIS-QADGVNKVFYLRTVEDANNIAPHITPESNVVVI 1211
+DG ++++K+ LA GSSP+T+S + V VF +RT EDAN + + N VV+
Sbjct: 280 AVFKDGFKLEYSKLLLAPGSSPKTLSCKGKDVENVFTIRTPEDANRVV-RLARGRNAVVV 338
Query: 1212 GSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVS 1271
G+ F+GME AA+ K SV+VV PF+ LG+ VG + K+FE+ VKF M+ VS
Sbjct: 339 GAGFLGMEVAAYLTEKAHSVSVVEVEETPFRRFLGERVGHTLMKMFENNRVKFYMQTEVS 398
Query: 1272 SFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLET 1331
E + L + + AD+ +VGIG V T +L G+ L+ + + VN+ ++T
Sbjct: 399 ELRAQE-GKLKEVVLKSSKVVRADVCVVGIGAVPATGFLRQSGISLDSRGFIPVNKMMQT 457
Query: 1332 NVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTML 1391
N+PGV+A GD PL N+ +I H+Q+A GR+AA NM+ ++ +ST+PF WT +
Sbjct: 458 NIPGVFAAGDAVTFPLAWRNNRKVNIPHWQMAHAQGRVAAQNMLAQEAEISTVPFLWTAM 517
Query: 1392 FGVGFRFAGYAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTVGMDPLAAQFAERIKMQ 1451
FG R+AGY G V I GDL+ LKF A+Y+ D+V+++ ++ DP+ ++ AE +
Sbjct: 518 FGKSLRYAGYGEGFDDVIIQGDLDELKFVAFYTKGDEVISVASMNYDPIVSKVAEVLASG 577
Query: 1452 KYIQKDQIENN--AW 1464
+ I+K ++E +W
Sbjct: 578 RTIRKREVETGDMSW 592
|
|
| UNIPROTKB|F1RKX7 AIFM3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 997 (356.0 bits), Expect = 5.6e-100, P = 5.6e-100
Identities = 200/488 (40%), Positives = 303/488 (62%)
Query: 979 YAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDD 1038
+A+G KC HYGAPLVKG L GRVRCPWHGACFNI+TGD+EDFPG+DSL ++V I+ +
Sbjct: 102 HALGHKCPHYGAPLVKGVLSRGRVRCPWHGACFNISTGDLEDFPGLDSLHKFQVKIEKE- 160
Query: 1039 SVVVQARKDELKNKKRKLPMAKL---SSGNKDT--FIVVGGGPSGATCVETLRQNGFTGK 1093
V V+A K L+ ++R MA S+G+ + ++VG G +G C ETLRQ GF+ +
Sbjct: 161 KVYVRASKQALQLQRRTKVMATCISPSAGHSGSTNVLIVGAGAAGLVCAETLRQEGFSDR 220
Query: 1094 LYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKI 1153
+ T + LPYDR KLSK LD + + + LR +EF++ + I V+ ++++ ++ KK
Sbjct: 221 IVLCTLDRHLPYDRPKLSKSLDTQPEQLALRPKEFFRAHGIEVLTEAQVVT-VDVRNKKA 279
Query: 1154 KLQDGTSIDFTKIYLATGSSPRTIS-QADGVNKVFYLRTVEDANNIAPHITPESNVVVIG 1212
+DG ++++K+ LA GSSP+T+S + V VF +RT EDAN + + N VV+G
Sbjct: 280 VFKDGFKLEYSKLLLAPGSSPKTLSCKGKEVENVFTIRTPEDANRVV-RLARGRNAVVVG 338
Query: 1213 SSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSS 1272
+ F+GME AA+ K SV+VV PF+ LG+ VG + K+FE+ VKF M+ V
Sbjct: 339 AGFLGMEVAAYLTEKAHSVSVVELEETPFRRLLGERVGRALMKMFENNRVKFYMQTEVLE 398
Query: 1273 FEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETN 1332
E + L + + AD+ +VGIG V T +L G+ L+ + + VN+ ++TN
Sbjct: 399 LRAQE-GKLKEVVLKSSKVVRADVCVVGIGAVPATGFLRQSGIGLDSRGFIPVNKMMQTN 457
Query: 1333 VPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLF 1392
VPGV+A GD PL N+ +I H+Q+A GR+AA NM+ ++ +ST+P+ WT +F
Sbjct: 458 VPGVFAAGDAVTFPLAWRNNRKVNIPHWQMAHAQGRVAAQNMLAQEAEISTVPYLWTAMF 517
Query: 1393 GVGFRFAGYAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTVGMDPLAAQFAERIKMQK 1452
G R+AGY G V I GDL LKF A+Y+ D+V+++ ++ DP+ ++ AE + +
Sbjct: 518 GKSLRYAGYGEGFDDVVIQGDLHELKFVAFYTKGDEVISVASMNYDPIVSKVAEVLASGR 577
Query: 1453 YIQKDQIE 1460
I+K ++E
Sbjct: 578 SIRKREVE 585
|
|
| UNIPROTKB|E1C3V0 AIFM3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 995 (355.3 bits), Expect = 9.4e-100, P = 9.4e-100
Identities = 199/463 (42%), Positives = 288/463 (62%)
Query: 497 KTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSL 556
K L YA+G KC HYGAPLVKG L GRVRCPWHGACFNI TGDIEDFPG+DSL
Sbjct: 92 KALLIKEGGEFYAMGHKCPHYGAPLVKGVLSKGRVRCPWHGACFNIGTGDIEDFPGLDSL 151
Query: 557 PCYKVTIQNDDSVVVQARKDELKNKKRKLPMAK---LSSGNKDT--FIVVGGGPSGATCV 611
P ++V I+ + V ++A K L+ ++R MAK LS+ N + +++G G +G C
Sbjct: 152 PRFQVKIEKE-KVYIRASKQALQTQRRTKMMAKCISLSNYNLSSTNVLIIGAGAAGLVCA 210
Query: 612 ETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKI 671
ETLRQ GF+ ++ T + LPYDR KLSK +D + I LR +EF++ DI V+ +
Sbjct: 211 ETLRQEGFSDRIVMCTMDRHLPYDRPKLSKSMDSHPEQIALRPKEFFRTYDIEVLTEMQA 270
Query: 672 ISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTIS-QADGVNKVFYLRTVEDANNIAPH 730
+ ++ K +DG +++ K+ +ATG++P+ +S + V VF +RT EDAN +
Sbjct: 271 AA-VDIKNKTAVFKDGFKMEYNKLLIATGNTPKALSCKGKEVENVFNIRTPEDANRVVKL 329
Query: 731 ITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKG 790
T + NVV++G+SF+GME AA+ + SV+VV VPF++ G+ VG + K+FES
Sbjct: 330 ATSK-NVVIVGASFLGMEVAAYLTERAHSVSVVELEEVPFKKFFGERVGRAVMKMFESHR 388
Query: 791 VKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQK 850
VKF M+ VS + E + L +G + AD+ +VGIG V T +L G+ ++ +
Sbjct: 389 VKFYMQTEVSELREQESK-LKEVVLKSGKVLRADVCVVGIGAVPATGFLKQSGINIDSKG 447
Query: 851 AVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSL 910
+VVN+ ++TN+PGV+A GD PL NK ++ H+Q+A HGRIAALNM+ T +
Sbjct: 448 FIVVNKMMQTNIPGVFAAGDAVTFPLALRNNKKVNVPHWQMAHMHGRIAALNMLAHGTEI 507
Query: 911 STIPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLEALKFTAYYS 953
ST+P+ WT +FG R+AG+ G V I GDL+ LKF A+Y+
Sbjct: 508 STVPYLWTAMFGKSIRYAGHGEGFDDVVIQGDLDELKFVAFYT 550
|
|
| ZFIN|ZDB-GENE-070112-2282 zgc:158614 "zgc:158614" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 993 (354.6 bits), Expect = 1.6e-99, P = 1.6e-99
Identities = 200/489 (40%), Positives = 297/489 (60%)
Query: 980 AVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDS 1039
AVG CSHYGAPL+KG+L RVRCP+HGACFN TGDIE+FPG+D LP +KV + D
Sbjct: 45 AVGGLCSHYGAPLIKGTLIGDRVRCPFHGACFNTKTGDIEEFPGLDCLPKFKVKV---DG 101
Query: 1040 VVVQARKDELKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITD 1099
V D+ KKR M+ G T +++GGGP+ C ETLRQN + G++ +T
Sbjct: 102 GKVYVTSDQKNLKKRVKKMSSRVPGVNHTVVLIGGGPASLQCAETLRQNDYGGRIVMVTK 161
Query: 1100 ENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGT 1159
+ LP D+ KLSK ++I+ + +LLR +F + I V KK + + + K + QDGT
Sbjct: 162 DEQLPLDKTKLSKAMNIEIEKVLLRQSDFLQQYGIEVWT-KKEVKSVDTDAKTVTFQDGT 220
Query: 1160 SIDFTKIYLATGSSPRTISQADG--VNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIG 1217
++ ++ ++TG R + + G + V L+T EDA+ I I+ V++G+SFIG
Sbjct: 221 LQNYDQLLISTGGRARPL-ECPGAELENVKLLQTYEDASEIH-RISAGKKAVIVGTSFIG 278
Query: 1218 MEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNE 1277
ME AA+ + K SVTV+G PFQ SLG ++G+ ++ E K VKF V+ + E
Sbjct: 279 MEVAAYLSDKAASVTVIGTSKFPFQASLGSDIGKMTMQMLEEKNVKFYTSNGVAEI-RGE 337
Query: 1278 KNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVY 1337
V L NG +PAD++I GIG + N+++L VE++ KAVVV+++++TN+P V+
Sbjct: 338 NGKVKEVVLKNGEVLPADIIIAGIGVIPNSDFLKETLVEIDSHKAVVVDKFMKTNIPDVF 397
Query: 1338 AGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFR 1397
A GD+ PL +K +IGH+QLAQ HGRIA L+M+ ++ ++T+P+FWTML G R
Sbjct: 398 AAGDVVSFPLTLVGHKRVNIGHWQLAQAHGRIAGLSMLNRQVEINTVPYFWTMLLGKSIR 457
Query: 1398 FAGYAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTVGMDPLAAQFAERIKMQKYIQKD 1457
+ GY G+T++ G E KF A+Y ++V+A ++ DP A+ AE + M K I K
Sbjct: 458 YTGYGEGYTEIVFKGSTEERKFLAFYIKDEEVVAAASLNFDPAVARLAEMLLMGKRITKA 517
Query: 1458 QIE--NNAW 1464
Q + N +W
Sbjct: 518 QAQSDNLSW 526
|
|
| FB|FBgn0032754 CG10700 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 980 (350.0 bits), Expect = 4.3e-98, P = 4.3e-98
Identities = 210/487 (43%), Positives = 287/487 (58%)
Query: 492 ASSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFP 551
AS P L + + AVG C H GAPL KG L RVRCPWHG CFN+ TGDIE+FP
Sbjct: 28 ASGIPSILLVKQSGILRAVGAMCPHRGAPLAKGVLSRNRVRCPWHGVCFNLETGDIENFP 87
Query: 552 GMDSLPCYKVTIQNDDSVVVQARKDELKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCV 611
G+DSLPC++V + + V+VQ ++ L R MA + ++ F+VVGGGPSGA CV
Sbjct: 88 GLDSLPCHRVNVDSRGQVLVQVKRSYLLRHARIKSMACRNWQDQRHFVVVGGGPSGAVCV 147
Query: 612 ETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKI 671
ETLRQ GFTG+L + E LPYDR ++ L+ ++ LR E+FYKD I + G
Sbjct: 148 ETLRQEGFTGRLTLVCGEKHLPYDRTRIMNLLNTYTKNLALREEQFYKDYGIEMQLGVSA 207
Query: 672 ISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAP 729
+ N + +G + + KIY+ATG S T GV+ V +R + DA +I
Sbjct: 208 -ERLDTNCNTLHCTNGKTFPYDKIYIATGYSAVT-PNIPGVHLKNVKVIRNIGDARSIFK 265
Query: 730 HITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESK 789
+ + VV +GSSF+ +EA A S+ +SVT+V R VPF+ +LG+ +G+RI KL E
Sbjct: 266 MVDKSTQVVCLGSSFMAVEATANLVSRARSVTLVARQNVPFKSTLGELIGQRILKLLEEN 325
Query: 790 GVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQ 849
V M + + N + +V A L + + IP +L+I+G G NT++L G+ +N
Sbjct: 326 KVDLRMSSGIIRILGNSRGEVVAVKLLDNSRIPCNLLILGTGCQCNTDFLQRSGININPN 385
Query: 850 KAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS 909
+V VN++L+T V VY GGDIA A + + +I HY LAQYHGRIAALNM
Sbjct: 386 GSVDVNDFLQTKVRNVYVGGDIANAYILGGFPDRVNISHYGLAQYHGRIAALNMSGHIAK 445
Query: 910 LSTIPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLEALKFTAYY-SNADKVLAILTVGMDP 968
L IPFF+T++FG FR AGY V I G LE L+F AY+ + DKV A+ + G DP
Sbjct: 446 LEAIPFFYTVIFGRAFRSAGYGP-FKDVVIDGSLEDLQFVAYFFDDYDKVTAVASCGRDP 504
Query: 969 LAAQFAE 975
+ AQFAE
Sbjct: 505 MVAQFAE 511
|
|
| UNIPROTKB|F1PQP3 AIFM3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 973 (347.6 bits), Expect = 2.5e-97, P = 2.5e-97
Identities = 198/489 (40%), Positives = 299/489 (61%)
Query: 979 YAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDD 1038
+A+G KC HYGAPLVKG L GRVRCPWHGACFNI TGD+EDFPG+DSL ++V I+
Sbjct: 103 HALGHKCPHYGAPLVKGVLSRGRVRCPWHGACFNIGTGDLEDFPGLDSLHKFQVKIERVK 162
Query: 1039 SVVVQARKDELKNKKRKLPMAKL---SSGNKDT--FIVVGGGPSGATCVETLRQNGFTGK 1093
V+ L+ ++R MAK S+G+ + ++VG G +G C ETLRQ GF+ +
Sbjct: 163 GYVLSGHPQALQLQRRTKVMAKCISPSAGHSSSTNVLIVGAGAAGLVCAETLRQEGFSDR 222
Query: 1094 LYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKI 1153
+ T + LPYDR KLSK LD + + + LR +EF++ I V+ ++++ ++ KK+
Sbjct: 223 IVLCTLDRHLPYDRPKLSKSLDAQPEQLALRPKEFFRAYGIEVLTEAQVVT-VDVRNKKV 281
Query: 1154 KLQDGTSIDFTKIYLATGSSPRTIS-QADGVNKVFYLRTVEDANNIAPHITPESNVVVIG 1212
+DG ++++K+ LA GSSP+T+S + V VF +RT EDAN + + N VV+G
Sbjct: 282 VFKDGFKLEYSKLLLAPGSSPKTLSCKGKEVENVFTIRTPEDANRVV-RLARGRNAVVVG 340
Query: 1213 SSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSS 1272
+ F+GME AA+ K SV+VV PF+ LG+ VG + K+FE+ VKF M+ VS
Sbjct: 341 AGFLGMEVAAYLTEKAHSVSVVELEETPFRRFLGERVGRALMKMFENNRVKFYMQTEVSE 400
Query: 1273 FEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY-LDGKGVELNGQKAVVVNEYLET 1331
E + L + + AD+ +VGIG + + L G GV ++ +++ ++T
Sbjct: 401 LRAQE-GKLKEVVLKSSKVVRADVCVVGIGEWVGRHGGLRGSGVR--AERTGPLHKMMQT 457
Query: 1332 NVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTML 1391
NVPGV+A GD PL N+ +I H+Q+A GR+AA NM+ ++ +ST+P+ WT +
Sbjct: 458 NVPGVFAAGDAVTFPLAWRNNRKVNIPHWQMAHAQGRVAAQNMLAQEAEISTVPYLWTAM 517
Query: 1392 FGVGFRFAGYAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTVGMDPLAAQFAERIKMQ 1451
FG R+AGY G V I GDLE LKF A+Y+ D+V+A+ ++ DP+ ++ AE +
Sbjct: 518 FGKSLRYAGYGEGFDDVIIQGDLEDLKFVAFYTKGDEVIAVASMNYDPIVSKVAEVLASG 577
Query: 1452 KYIQKDQIE 1460
+ I+K ++E
Sbjct: 578 RAIRKREVE 586
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1466 | |||
| pfam07992 | 283 | pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp | 1e-50 | |
| pfam07992 | 283 | pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp | 1e-50 | |
| pfam07992 | 283 | pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp | 1e-50 | |
| COG0446 | 415 | COG0446, HcaD, Uncharacterized NAD(FAD)-dependent | 3e-43 | |
| COG0446 | 415 | COG0446, HcaD, Uncharacterized NAD(FAD)-dependent | 3e-43 | |
| COG0446 | 415 | COG0446, HcaD, Uncharacterized NAD(FAD)-dependent | 3e-43 | |
| PRK09754 | 396 | PRK09754, PRK09754, phenylpropionate dioxygenase f | 1e-42 | |
| PRK09754 | 396 | PRK09754, PRK09754, phenylpropionate dioxygenase f | 1e-42 | |
| PRK09754 | 396 | PRK09754, PRK09754, phenylpropionate dioxygenase f | 1e-42 | |
| cd03478 | 95 | cd03478, Rieske_AIFL_N, AIFL (apoptosis-inducing f | 2e-36 | |
| cd03478 | 95 | cd03478, Rieske_AIFL_N, AIFL (apoptosis-inducing f | 2e-36 | |
| COG1251 | 793 | COG1251, NirB, NAD(P)H-nitrite reductase [Energy p | 2e-31 | |
| COG1251 | 793 | COG1251, NirB, NAD(P)H-nitrite reductase [Energy p | 2e-31 | |
| COG1251 | 793 | COG1251, NirB, NAD(P)H-nitrite reductase [Energy p | 2e-31 | |
| COG1249 | 454 | COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas | 1e-29 | |
| COG1249 | 454 | COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas | 1e-29 | |
| COG1249 | 454 | COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas | 1e-29 | |
| TIGR01350 | 460 | TIGR01350, lipoamide_DH, dihydrolipoamide dehydrog | 5e-27 | |
| TIGR01350 | 460 | TIGR01350, lipoamide_DH, dihydrolipoamide dehydrog | 5e-27 | |
| TIGR01350 | 460 | TIGR01350, lipoamide_DH, dihydrolipoamide dehydrog | 5e-27 | |
| TIGR03385 | 427 | TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase | 5e-24 | |
| TIGR03385 | 427 | TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase | 5e-24 | |
| TIGR03385 | 427 | TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase | 5e-24 | |
| TIGR02053 | 463 | TIGR02053, MerA, mercuric reductase | 1e-22 | |
| TIGR02053 | 463 | TIGR02053, MerA, mercuric reductase | 1e-22 | |
| TIGR02053 | 463 | TIGR02053, MerA, mercuric reductase | 1e-22 | |
| PRK06292 | 460 | PRK06292, PRK06292, dihydrolipoamide dehydrogenase | 8e-22 | |
| PRK06292 | 460 | PRK06292, PRK06292, dihydrolipoamide dehydrogenase | 8e-22 | |
| PRK06292 | 460 | PRK06292, PRK06292, dihydrolipoamide dehydrogenase | 8e-22 | |
| PRK06370 | 463 | PRK06370, PRK06370, mercuric reductase; Validated | 2e-21 | |
| PRK06370 | 463 | PRK06370, PRK06370, mercuric reductase; Validated | 2e-21 | |
| PRK06370 | 463 | PRK06370, PRK06370, mercuric reductase; Validated | 2e-21 | |
| PRK09564 | 444 | PRK09564, PRK09564, coenzyme A disulfide reductase | 7e-21 | |
| PRK09564 | 444 | PRK09564, PRK09564, coenzyme A disulfide reductase | 7e-21 | |
| PRK09564 | 444 | PRK09564, PRK09564, coenzyme A disulfide reductase | 7e-21 | |
| PRK06416 | 462 | PRK06416, PRK06416, dihydrolipoamide dehydrogenase | 8e-20 | |
| PRK06416 | 462 | PRK06416, PRK06416, dihydrolipoamide dehydrogenase | 8e-20 | |
| PRK06416 | 462 | PRK06416, PRK06416, dihydrolipoamide dehydrogenase | 8e-20 | |
| TIGR02374 | 785 | TIGR02374, nitri_red_nirB, nitrite reductase [NAD( | 8e-20 | |
| TIGR02374 | 785 | TIGR02374, nitri_red_nirB, nitrite reductase [NAD( | 8e-20 | |
| TIGR02374 | 785 | TIGR02374, nitri_red_nirB, nitrite reductase [NAD( | 8e-20 | |
| PRK07846 | 451 | PRK07846, PRK07846, mycothione reductase; Reviewed | 3e-19 | |
| PRK07846 | 451 | PRK07846, PRK07846, mycothione reductase; Reviewed | 3e-19 | |
| PRK07846 | 451 | PRK07846, PRK07846, mycothione reductase; Reviewed | 3e-19 | |
| PRK14727 | 479 | PRK14727, PRK14727, putative mercuric reductase; P | 2e-18 | |
| PRK14727 | 479 | PRK14727, PRK14727, putative mercuric reductase; P | 2e-18 | |
| PRK14727 | 479 | PRK14727, PRK14727, putative mercuric reductase; P | 2e-18 | |
| cd03467 | 98 | cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster | 6e-18 | |
| cd03467 | 98 | cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster | 9e-17 | |
| PRK06327 | 475 | PRK06327, PRK06327, dihydrolipoamide dehydrogenase | 2e-16 | |
| PRK06327 | 475 | PRK06327, PRK06327, dihydrolipoamide dehydrogenase | 2e-16 | |
| PRK06327 | 475 | PRK06327, PRK06327, dihydrolipoamide dehydrogenase | 2e-16 | |
| COG1252 | 405 | COG1252, Ndh, NADH dehydrogenase, FAD-containing s | 1e-15 | |
| COG1252 | 405 | COG1252, Ndh, NADH dehydrogenase, FAD-containing s | 1e-15 | |
| COG1252 | 405 | COG1252, Ndh, NADH dehydrogenase, FAD-containing s | 1e-15 | |
| TIGR03452 | 452 | TIGR03452, mycothione_red, mycothione reductase | 1e-15 | |
| TIGR03452 | 452 | TIGR03452, mycothione_red, mycothione reductase | 1e-15 | |
| TIGR03452 | 452 | TIGR03452, mycothione_red, mycothione reductase | 1e-15 | |
| COG0492 | 305 | COG0492, TrxB, Thioredoxin reductase [Posttranslat | 2e-15 | |
| COG0492 | 305 | COG0492, TrxB, Thioredoxin reductase [Posttranslat | 2e-15 | |
| COG0492 | 305 | COG0492, TrxB, Thioredoxin reductase [Posttranslat | 2e-15 | |
| PRK13748 | 561 | PRK13748, PRK13748, putative mercuric reductase; P | 2e-15 | |
| PRK13748 | 561 | PRK13748, PRK13748, putative mercuric reductase; P | 2e-15 | |
| PRK13748 | 561 | PRK13748, PRK13748, putative mercuric reductase; P | 2e-15 | |
| PRK06116 | 450 | PRK06116, PRK06116, glutathione reductase; Validat | 6e-15 | |
| PRK06116 | 450 | PRK06116, PRK06116, glutathione reductase; Validat | 6e-15 | |
| PRK06116 | 450 | PRK06116, PRK06116, glutathione reductase; Validat | 6e-15 | |
| PRK09853 | 1019 | PRK09853, PRK09853, putative selenate reductase su | 9e-15 | |
| PRK09853 | 1019 | PRK09853, PRK09853, putative selenate reductase su | 9e-15 | |
| PRK09853 | 1019 | PRK09853, PRK09853, putative selenate reductase su | 9e-15 | |
| PRK13512 | 438 | PRK13512, PRK13512, coenzyme A disulfide reductase | 1e-14 | |
| PRK13512 | 438 | PRK13512, PRK13512, coenzyme A disulfide reductase | 1e-14 | |
| PRK13512 | 438 | PRK13512, PRK13512, coenzyme A disulfide reductase | 1e-14 | |
| TIGR01424 | 446 | TIGR01424, gluta_reduc_2, glutathione-disulfide re | 2e-14 | |
| TIGR01424 | 446 | TIGR01424, gluta_reduc_2, glutathione-disulfide re | 2e-14 | |
| TIGR01424 | 446 | TIGR01424, gluta_reduc_2, glutathione-disulfide re | 2e-14 | |
| PRK11749 | 457 | PRK11749, PRK11749, dihydropyrimidine dehydrogenas | 3e-14 | |
| PRK11749 | 457 | PRK11749, PRK11749, dihydropyrimidine dehydrogenas | 3e-14 | |
| PRK11749 | 457 | PRK11749, PRK11749, dihydropyrimidine dehydrogenas | 3e-14 | |
| pfam00355 | 99 | pfam00355, Rieske, Rieske [2Fe-2S] domain | 1e-13 | |
| pfam00355 | 99 | pfam00355, Rieske, Rieske [2Fe-2S] domain | 1e-13 | |
| PRK05249 | 461 | PRK05249, PRK05249, soluble pyridine nucleotide tr | 3e-13 | |
| PRK05249 | 461 | PRK05249, PRK05249, soluble pyridine nucleotide tr | 3e-13 | |
| PRK05249 | 461 | PRK05249, PRK05249, soluble pyridine nucleotide tr | 3e-13 | |
| PRK07818 | 466 | PRK07818, PRK07818, dihydrolipoamide dehydrogenase | 4e-13 | |
| PRK07818 | 466 | PRK07818, PRK07818, dihydrolipoamide dehydrogenase | 4e-13 | |
| PRK07818 | 466 | PRK07818, PRK07818, dihydrolipoamide dehydrogenase | 4e-13 | |
| PRK04965 | 377 | PRK04965, PRK04965, NADH:flavorubredoxin oxidoredu | 7e-13 | |
| PRK04965 | 377 | PRK04965, PRK04965, NADH:flavorubredoxin oxidoredu | 7e-13 | |
| PRK04965 | 377 | PRK04965, PRK04965, NADH:flavorubredoxin oxidoredu | 7e-13 | |
| PRK14694 | 468 | PRK14694, PRK14694, putative mercuric reductase; P | 7e-13 | |
| PRK14694 | 468 | PRK14694, PRK14694, putative mercuric reductase; P | 7e-13 | |
| PRK14694 | 468 | PRK14694, PRK14694, putative mercuric reductase; P | 7e-13 | |
| PRK14989 | 847 | PRK14989, PRK14989, nitrite reductase subunit NirD | 2e-12 | |
| PRK14989 | 847 | PRK14989, PRK14989, nitrite reductase subunit NirD | 2e-12 | |
| PRK14989 | 847 | PRK14989, PRK14989, nitrite reductase subunit NirD | 2e-12 | |
| pfam00070 | 82 | pfam00070, Pyr_redox, Pyridine nucleotide-disulphi | 4e-12 | |
| pfam00070 | 82 | pfam00070, Pyr_redox, Pyridine nucleotide-disulphi | 4e-12 | |
| pfam00070 | 82 | pfam00070, Pyr_redox, Pyridine nucleotide-disulphi | 4e-12 | |
| TIGR03315 | 1012 | TIGR03315, Se_ygfK, putative selenate reductase, Y | 7e-12 | |
| TIGR03315 | 1012 | TIGR03315, Se_ygfK, putative selenate reductase, Y | 7e-12 | |
| TIGR03315 | 1012 | TIGR03315, Se_ygfK, putative selenate reductase, Y | 7e-12 | |
| cd03528 | 98 | cd03528, Rieske_RO_ferredoxin, Rieske non-heme iro | 8e-12 | |
| COG2146 | 106 | COG2146, {NirD}, Ferredoxin subunits of nitrite re | 8e-12 | |
| cd03528 | 98 | cd03528, Rieske_RO_ferredoxin, Rieske non-heme iro | 2e-11 | |
| COG2146 | 106 | COG2146, {NirD}, Ferredoxin subunits of nitrite re | 2e-11 | |
| PRK05976 | 472 | PRK05976, PRK05976, dihydrolipoamide dehydrogenase | 2e-11 | |
| PRK05976 | 472 | PRK05976, PRK05976, dihydrolipoamide dehydrogenase | 2e-11 | |
| PRK05976 | 472 | PRK05976, PRK05976, dihydrolipoamide dehydrogenase | 2e-11 | |
| TIGR01423 | 486 | TIGR01423, trypano_reduc, trypanothione-disulfide | 5e-11 | |
| TIGR01423 | 486 | TIGR01423, trypano_reduc, trypanothione-disulfide | 5e-11 | |
| TIGR01423 | 486 | TIGR01423, trypano_reduc, trypanothione-disulfide | 5e-11 | |
| COG3634 | 520 | COG3634, AhpF, Alkyl hydroperoxide reductase, larg | 2e-10 | |
| COG3634 | 520 | COG3634, AhpF, Alkyl hydroperoxide reductase, larg | 2e-10 | |
| COG3634 | 520 | COG3634, AhpF, Alkyl hydroperoxide reductase, larg | 2e-10 | |
| PRK12778 | 752 | PRK12778, PRK12778, putative bifunctional 2-polypr | 6e-10 | |
| PRK12778 | 752 | PRK12778, PRK12778, putative bifunctional 2-polypr | 6e-10 | |
| PRK12778 | 752 | PRK12778, PRK12778, putative bifunctional 2-polypr | 6e-10 | |
| TIGR01421 | 450 | TIGR01421, gluta_reduc_1, glutathione-disulfide re | 6e-10 | |
| TIGR01421 | 450 | TIGR01421, gluta_reduc_1, glutathione-disulfide re | 6e-10 | |
| TIGR01421 | 450 | TIGR01421, gluta_reduc_1, glutathione-disulfide re | 6e-10 | |
| PRK15317 | 517 | PRK15317, PRK15317, alkyl hydroperoxide reductase | 2e-09 | |
| PRK15317 | 517 | PRK15317, PRK15317, alkyl hydroperoxide reductase | 2e-09 | |
| PRK15317 | 517 | PRK15317, PRK15317, alkyl hydroperoxide reductase | 2e-09 | |
| PRK07845 | 466 | PRK07845, PRK07845, flavoprotein disulfide reducta | 4e-09 | |
| PRK07845 | 466 | PRK07845, PRK07845, flavoprotein disulfide reducta | 4e-09 | |
| PRK07845 | 466 | PRK07845, PRK07845, flavoprotein disulfide reducta | 4e-09 | |
| PRK07251 | 438 | PRK07251, PRK07251, pyridine nucleotide-disulfide | 2e-08 | |
| PRK07251 | 438 | PRK07251, PRK07251, pyridine nucleotide-disulfide | 2e-08 | |
| PRK07251 | 438 | PRK07251, PRK07251, pyridine nucleotide-disulfide | 2e-08 | |
| PLN02507 | 499 | PLN02507, PLN02507, glutathione reductase | 2e-08 | |
| PLN02507 | 499 | PLN02507, PLN02507, glutathione reductase | 2e-08 | |
| PLN02507 | 499 | PLN02507, PLN02507, glutathione reductase | 2e-08 | |
| PRK12771 | 564 | PRK12771, PRK12771, putative glutamate synthase (N | 3e-08 | |
| PRK12771 | 564 | PRK12771, PRK12771, putative glutamate synthase (N | 3e-08 | |
| PRK12771 | 564 | PRK12771, PRK12771, putative glutamate synthase (N | 3e-08 | |
| PRK09965 | 106 | PRK09965, PRK09965, 3-phenylpropionate dioxygenase | 5e-08 | |
| PRK06912 | 458 | PRK06912, acoL, dihydrolipoamide dehydrogenase; Va | 5e-08 | |
| PRK06912 | 458 | PRK06912, acoL, dihydrolipoamide dehydrogenase; Va | 5e-08 | |
| PRK06912 | 458 | PRK06912, acoL, dihydrolipoamide dehydrogenase; Va | 5e-08 | |
| TIGR01292 | 299 | TIGR01292, TRX_reduct, thioredoxin-disulfide reduc | 1e-07 | |
| TIGR01292 | 299 | TIGR01292, TRX_reduct, thioredoxin-disulfide reduc | 1e-07 | |
| TIGR01292 | 299 | TIGR01292, TRX_reduct, thioredoxin-disulfide reduc | 1e-07 | |
| TIGR01316 | 449 | TIGR01316, gltA, glutamate synthase (NADPH), homot | 1e-07 | |
| TIGR01316 | 449 | TIGR01316, gltA, glutamate synthase (NADPH), homot | 1e-07 | |
| TIGR01316 | 449 | TIGR01316, gltA, glutamate synthase (NADPH), homot | 1e-07 | |
| TIGR03140 | 515 | TIGR03140, AhpF, alkyl hydroperoxide reductase sub | 2e-07 | |
| TIGR03140 | 515 | TIGR03140, AhpF, alkyl hydroperoxide reductase sub | 2e-07 | |
| TIGR03140 | 515 | TIGR03140, AhpF, alkyl hydroperoxide reductase sub | 2e-07 | |
| PTZ00058 | 561 | PTZ00058, PTZ00058, glutathione reductase; Provisi | 2e-07 | |
| PTZ00058 | 561 | PTZ00058, PTZ00058, glutathione reductase; Provisi | 2e-07 | |
| PTZ00058 | 561 | PTZ00058, PTZ00058, glutathione reductase; Provisi | 2e-07 | |
| PRK06115 | 466 | PRK06115, PRK06115, dihydrolipoamide dehydrogenase | 3e-07 | |
| PRK06115 | 466 | PRK06115, PRK06115, dihydrolipoamide dehydrogenase | 3e-07 | |
| PRK06115 | 466 | PRK06115, PRK06115, dihydrolipoamide dehydrogenase | 3e-07 | |
| TIGR01438 | 484 | TIGR01438, TGR, thioredoxin and glutathione reduct | 3e-07 | |
| TIGR01438 | 484 | TIGR01438, TGR, thioredoxin and glutathione reduct | 3e-07 | |
| TIGR01438 | 484 | TIGR01438, TGR, thioredoxin and glutathione reduct | 3e-07 | |
| TIGR03143 | 555 | TIGR03143, AhpF_homolog, putative alkyl hydroperox | 3e-07 | |
| TIGR03143 | 555 | TIGR03143, AhpF_homolog, putative alkyl hydroperox | 3e-07 | |
| TIGR03143 | 555 | TIGR03143, AhpF_homolog, putative alkyl hydroperox | 3e-07 | |
| PRK09965 | 106 | PRK09965, PRK09965, 3-phenylpropionate dioxygenase | 4e-07 | |
| PRK08010 | 441 | PRK08010, PRK08010, pyridine nucleotide-disulfide | 8e-07 | |
| PRK08010 | 441 | PRK08010, PRK08010, pyridine nucleotide-disulfide | 8e-07 | |
| PRK08010 | 441 | PRK08010, PRK08010, pyridine nucleotide-disulfide | 8e-07 | |
| TIGR03169 | 364 | TIGR03169, Nterm_to_SelD, pyridine nucleotide-disu | 9e-07 | |
| TIGR03169 | 364 | TIGR03169, Nterm_to_SelD, pyridine nucleotide-disu | 9e-07 | |
| TIGR03169 | 364 | TIGR03169, Nterm_to_SelD, pyridine nucleotide-disu | 9e-07 | |
| TIGR04018 | 316 | TIGR04018, Bthiol_YpdA, putative bacillithiol syst | 3e-06 | |
| TIGR04018 | 316 | TIGR04018, Bthiol_YpdA, putative bacillithiol syst | 3e-06 | |
| TIGR04018 | 316 | TIGR04018, Bthiol_YpdA, putative bacillithiol syst | 3e-06 | |
| PRK12810 | 471 | PRK12810, gltD, glutamate synthase subunit beta; R | 4e-06 | |
| PRK12810 | 471 | PRK12810, gltD, glutamate synthase subunit beta; R | 4e-06 | |
| PRK12810 | 471 | PRK12810, gltD, glutamate synthase subunit beta; R | 4e-06 | |
| PRK06467 | 471 | PRK06467, PRK06467, dihydrolipoamide dehydrogenase | 5e-06 | |
| PRK06467 | 471 | PRK06467, PRK06467, dihydrolipoamide dehydrogenase | 5e-06 | |
| PRK06467 | 471 | PRK06467, PRK06467, dihydrolipoamide dehydrogenase | 5e-06 | |
| cd03532 | 116 | cd03532, Rieske_RO_Alpha_VanA_DdmC, Rieske non-hem | 1e-05 | |
| cd03532 | 116 | cd03532, Rieske_RO_Alpha_VanA_DdmC, Rieske non-hem | 1e-05 | |
| PRK12831 | 464 | PRK12831, PRK12831, putative oxidoreductase; Provi | 1e-05 | |
| PRK12831 | 464 | PRK12831, PRK12831, putative oxidoreductase; Provi | 1e-05 | |
| PRK12831 | 464 | PRK12831, PRK12831, putative oxidoreductase; Provi | 1e-05 | |
| PTZ00052 | 499 | PTZ00052, PTZ00052, thioredoxin reductase; Provisi | 2e-05 | |
| PTZ00052 | 499 | PTZ00052, PTZ00052, thioredoxin reductase; Provisi | 2e-05 | |
| PTZ00052 | 499 | PTZ00052, PTZ00052, thioredoxin reductase; Provisi | 2e-05 | |
| PTZ00318 | 424 | PTZ00318, PTZ00318, NADH dehydrogenase-like protei | 3e-05 | |
| PTZ00318 | 424 | PTZ00318, PTZ00318, NADH dehydrogenase-like protei | 3e-05 | |
| PTZ00318 | 424 | PTZ00318, PTZ00318, NADH dehydrogenase-like protei | 3e-05 | |
| COG0493 | 457 | COG0493, GltD, NADPH-dependent glutamate synthase | 5e-05 | |
| COG0493 | 457 | COG0493, GltD, NADPH-dependent glutamate synthase | 5e-05 | |
| COG0493 | 457 | COG0493, GltD, NADPH-dependent glutamate synthase | 5e-05 | |
| cd03530 | 98 | cd03530, Rieske_NirD_small_Bacillus, Small subunit | 8e-05 | |
| cd03530 | 98 | cd03530, Rieske_NirD_small_Bacillus, Small subunit | 8e-05 | |
| cd04337 | 129 | cd04337, Rieske_RO_Alpha_Cao, Cao (chlorophyll a o | 2e-04 | |
| cd04337 | 129 | cd04337, Rieske_RO_Alpha_Cao, Cao (chlorophyll a o | 2e-04 | |
| cd03469 | 118 | cd03469, Rieske_RO_Alpha_N, Rieske non-heme iron o | 4e-04 | |
| cd03469 | 118 | cd03469, Rieske_RO_Alpha_N, Rieske non-heme iron o | 4e-04 | |
| PRK12814 | 652 | PRK12814, PRK12814, putative NADPH-dependent gluta | 5e-04 | |
| PRK12814 | 652 | PRK12814, PRK12814, putative NADPH-dependent gluta | 5e-04 | |
| PRK12814 | 652 | PRK12814, PRK12814, putative NADPH-dependent gluta | 5e-04 | |
| pfam07992 | 283 | pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp | 8e-04 | |
| pfam07992 | 283 | pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp | 8e-04 | |
| pfam07992 | 283 | pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp | 8e-04 | |
| pfam13738 | 202 | pfam13738, Pyr_redox_3, Pyridine nucleotide-disulp | 0.001 | |
| pfam13738 | 202 | pfam13738, Pyr_redox_3, Pyridine nucleotide-disulp | 0.001 | |
| pfam13738 | 202 | pfam13738, Pyr_redox_3, Pyridine nucleotide-disulp | 0.001 | |
| PRK13984 | 604 | PRK13984, PRK13984, putative oxidoreductase; Provi | 0.001 | |
| PRK13984 | 604 | PRK13984, PRK13984, putative oxidoreductase; Provi | 0.001 | |
| PRK13984 | 604 | PRK13984, PRK13984, putative oxidoreductase; Provi | 0.001 | |
| TIGR02377 | 101 | TIGR02377, MocE_fam_FeS, Rieske [2Fe-2S] domain pr | 0.002 | |
| cd03537 | 123 | cd03537, Rieske_RO_Alpha_PrnD, This alignment mode | 0.002 | |
| cd03537 | 123 | cd03537, Rieske_RO_Alpha_PrnD, This alignment mode | 0.002 | |
| TIGR02377 | 101 | TIGR02377, MocE_fam_FeS, Rieske [2Fe-2S] domain pr | 0.003 |
| >gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase | Back alignment and domain information |
|---|
Score = 181 bits (460), Expect = 1e-50
Identities = 94/283 (33%), Positives = 140/283 (49%), Gaps = 15/283 (5%)
Query: 47 IVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKAD------SILL 100
+++GGGP+G L + G K+ I E Y+R L K+L ++ L
Sbjct: 3 VIIGGGPAGLAAAIRLARLG--LKVALIEREGGTCYNRGCLPKKLLLEVAEGLELAIGLA 60
Query: 101 RTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQD---GTSIDFTKIYLATGSSPRTISQA 157
EE YK+ + V+ G +++ D + EK + L+D G I + K+ +ATG+ PR
Sbjct: 61 LPEEVYKEFGVEVLLGTEVV-DIDRGEKTVVLKDVETGREITYDKLIIATGARPRIP-GI 118
Query: 158 DGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP 217
GV V LR V D++ I + VVV+G +IG+E AA A K VTVV R
Sbjct: 119 PGVE-VATLRGVIDSDEILELLELPKRVVVVGGGYIGLELAAALAKLGKEVTVVERRDRL 177
Query: 218 FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVG 277
+ + + KL + V+ V K V L +G + AD+V+V
Sbjct: 178 LARADDEISAALLEKLEKLLLGVTVLLVVVVV-VKVGDGKVVEVKLGDGEELDADVVLVA 236
Query: 278 IGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA 320
IG NT L+ GVEL+ + +VV+EYL T+VPG+YA GD+A
Sbjct: 237 IGRRPNTELLEQAGVELDERGYIVVDEYLRTSVPGIYAAGDVA 279
|
This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283 |
| >gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase | Back alignment and domain information |
|---|
Score = 181 bits (460), Expect = 1e-50
Identities = 94/283 (33%), Positives = 140/283 (49%), Gaps = 15/283 (5%)
Query: 599 IVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKAD------SILL 652
+++GGGP+G L + G K+ I E Y+R L K+L ++ L
Sbjct: 3 VIIGGGPAGLAAAIRLARLG--LKVALIEREGGTCYNRGCLPKKLLLEVAEGLELAIGLA 60
Query: 653 RTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQD---GTSIDFTKIYLATGSSPRTISQA 709
EE YK+ + V+ G +++ D + EK + L+D G I + K+ +ATG+ PR
Sbjct: 61 LPEEVYKEFGVEVLLGTEVV-DIDRGEKTVVLKDVETGREITYDKLIIATGARPRIP-GI 118
Query: 710 DGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP 769
GV V LR V D++ I + VVV+G +IG+E AA A K VTVV R
Sbjct: 119 PGVE-VATLRGVIDSDEILELLELPKRVVVVGGGYIGLELAAALAKLGKEVTVVERRDRL 177
Query: 770 FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVG 829
+ + + KL + V+ V K V L +G + AD+V+V
Sbjct: 178 LARADDEISAALLEKLEKLLLGVTVLLVVVVV-VKVGDGKVVEVKLGDGEELDADVVLVA 236
Query: 830 IGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA 872
IG NT L+ GVEL+ + +VV+EYL T+VPG+YA GD+A
Sbjct: 237 IGRRPNTELLEQAGVELDERGYIVVDEYLRTSVPGIYAAGDVA 279
|
This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283 |
| >gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase | Back alignment and domain information |
|---|
Score = 181 bits (460), Expect = 1e-50
Identities = 94/283 (33%), Positives = 140/283 (49%), Gaps = 15/283 (5%)
Query: 1070 IVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKAD------SILL 1123
+++GGGP+G L + G K+ I E Y+R L K+L ++ L
Sbjct: 3 VIIGGGPAGLAAAIRLARLG--LKVALIEREGGTCYNRGCLPKKLLLEVAEGLELAIGLA 60
Query: 1124 RTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQD---GTSIDFTKIYLATGSSPRTISQA 1180
EE YK+ + V+ G +++ D + EK + L+D G I + K+ +ATG+ PR
Sbjct: 61 LPEEVYKEFGVEVLLGTEVV-DIDRGEKTVVLKDVETGREITYDKLIIATGARPRIP-GI 118
Query: 1181 DGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP 1240
GV V LR V D++ I + VVV+G +IG+E AA A K VTVV R
Sbjct: 119 PGVE-VATLRGVIDSDEILELLELPKRVVVVGGGYIGLELAAALAKLGKEVTVVERRDRL 177
Query: 1241 FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVG 1300
+ + + KL + V+ V K V L +G + AD+V+V
Sbjct: 178 LARADDEISAALLEKLEKLLLGVTVLLVVVVV-VKVGDGKVVEVKLGDGEELDADVVLVA 236
Query: 1301 IGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA 1343
IG NT L+ GVEL+ + +VV+EYL T+VPG+YA GD+A
Sbjct: 237 IGRRPNTELLEQAGVELDERGYIVVDEYLRTSVPGIYAAGDVA 279
|
This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283 |
| >gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Score = 163 bits (414), Expect = 3e-43
Identities = 102/342 (29%), Positives = 147/342 (42%), Gaps = 11/342 (3%)
Query: 46 FIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSK--QLDIKADSILLRTE 103
++VGGG +G + TLR+ ++ I E Y R LS I + L
Sbjct: 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPP 60
Query: 104 EFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNK 162
F + I V G ++ S D E K + L DG I++ + LATG+ PR +D
Sbjct: 61 RFNRATGIDVRTGTEVTSIDPE--NKVVLLDDG-EIEYDYLVLATGARPRPPPISDW-EG 116
Query: 163 VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESL 222
V LR EDA + P +VVV+G+ IG+EAA A + K VT++ + L
Sbjct: 117 VVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL 176
Query: 223 GKEVGERITKLFESKGVKFVMKANVSSFE-KNEKNDVTAANLDNGTTIPADLVIVGIGTV 281
EV E + +L E GV+ ++ V E K V +G I ADLVI+G G
Sbjct: 177 DPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGER 236
Query: 282 LNTNYLDGKGVELNGQ-KAVVVNEYLET-NVPGVYAGGDIAYAPLHSFYNKNASIGHYQL 339
N + L AV+V+E T P VYA GD+A P + K I + +
Sbjct: 237 PNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIP-AAETGKGGRIALWAI 295
Query: 340 AQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRFAGYAAG 381
A GRIAA N+ + + + + G G
Sbjct: 296 AVAAGRIAAENIAGALRIPGLLGTVISDVGDLCAASTGLTEG 337
|
Length = 415 |
| >gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Score = 163 bits (414), Expect = 3e-43
Identities = 102/342 (29%), Positives = 147/342 (42%), Gaps = 11/342 (3%)
Query: 598 FIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSK--QLDIKADSILLRTE 655
++VGGG +G + TLR+ ++ I E Y R LS I + L
Sbjct: 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPP 60
Query: 656 EFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNK 714
F + I V G ++ S D E K + L DG I++ + LATG+ PR +D
Sbjct: 61 RFNRATGIDVRTGTEVTSIDPE--NKVVLLDDG-EIEYDYLVLATGARPRPPPISDW-EG 116
Query: 715 VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESL 774
V LR EDA + P +VVV+G+ IG+EAA A + K VT++ + L
Sbjct: 117 VVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL 176
Query: 775 GKEVGERITKLFESKGVKFVMKANVSSFE-KNEKNDVTAANLDNGTTIPADLVIVGIGTV 833
EV E + +L E GV+ ++ V E K V +G I ADLVI+G G
Sbjct: 177 DPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGER 236
Query: 834 LNTNYLDGKGVELNGQ-KAVVVNEYLET-NVPGVYAGGDIAYAPLHSFYNKNASIGHYQL 891
N + L AV+V+E T P VYA GD+A P + K I + +
Sbjct: 237 PNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIP-AAETGKGGRIALWAI 295
Query: 892 AQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRFAGYAAG 933
A GRIAA N+ + + + + G G
Sbjct: 296 AVAAGRIAAENIAGALRIPGLLGTVISDVGDLCAASTGLTEG 337
|
Length = 415 |
| >gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Score = 163 bits (414), Expect = 3e-43
Identities = 102/342 (29%), Positives = 147/342 (42%), Gaps = 11/342 (3%)
Query: 1069 FIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSK--QLDIKADSILLRTE 1126
++VGGG +G + TLR+ ++ I E Y R LS I + L
Sbjct: 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPP 60
Query: 1127 EFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNK 1185
F + I V G ++ S D E K + L DG I++ + LATG+ PR +D
Sbjct: 61 RFNRATGIDVRTGTEVTSIDPE--NKVVLLDDG-EIEYDYLVLATGARPRPPPISDW-EG 116
Query: 1186 VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESL 1245
V LR EDA + P +VVV+G+ IG+EAA A + K VT++ + L
Sbjct: 117 VVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL 176
Query: 1246 GKEVGERITKLFESKGVKFVMKANVSSFE-KNEKNDVTAANLDNGTTIPADLVIVGIGTV 1304
EV E + +L E GV+ ++ V E K V +G I ADLVI+G G
Sbjct: 177 DPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGER 236
Query: 1305 LNTNYLDGKGVELNGQ-KAVVVNEYLET-NVPGVYAGGDIAYAPLHSFYNKNASIGHYQL 1362
N + L AV+V+E T P VYA GD+A P + K I + +
Sbjct: 237 PNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIP-AAETGKGGRIALWAI 295
Query: 1363 AQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRFAGYAAG 1404
A GRIAA N+ + + + + G G
Sbjct: 296 AVAAGRIAAENIAGALRIPGLLGTVISDVGDLCAASTGLTEG 337
|
Length = 415 |
| >gnl|CDD|170080 PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Score = 161 bits (408), Expect = 1e-42
Identities = 100/363 (27%), Positives = 175/363 (48%), Gaps = 30/363 (8%)
Query: 45 TFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSIL--LRT 102
T I+VGGG + A +LRQ GFTG+L+ +DE LPY+R LSK + ++ L +
Sbjct: 5 TIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLP 64
Query: 103 EEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNK 162
++++N++H+ G I + +++ L +G S + ++++ATG++ R + D + +
Sbjct: 65 ANWWQENNVHLHSG-VTIKTLGRDTRELVLTNGESWHWDQLFIATGAAARPLPLLDALGE 123
Query: 163 -VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVV-------GRG 214
F LR DA + + PE +VV++G+ IG+E AA + VTV+ GR
Sbjct: 124 RCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRN 183
Query: 215 AVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLV 274
A P V + + + GV+ ++ + EK ++T L +G T+ AD+V
Sbjct: 184 APPP-------VQRYLLQRHQQAGVRILLNNAIEHVVDGEKVELT---LQSGETLQADVV 233
Query: 275 IVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYA--PLHSFYNKNA 332
I GIG N ++ +V++E T P ++AGGD+A + + +
Sbjct: 234 IYGIGISANDQLAREANLDTAN--GIVIDEACRTCDPAIFAGGDVAITRLDNGALHRCES 291
Query: 333 SIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLE 392
++ A +IAA M+ L P+FW+ + +F G G + G+ E
Sbjct: 292 ----WENANNQAQIAAAAMLGLPLPLLPPPWFWSDQYSDNLQFIGDMRGDDWL-CRGNPE 346
Query: 393 ALK 395
K
Sbjct: 347 TQK 349
|
Length = 396 |
| >gnl|CDD|170080 PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Score = 161 bits (408), Expect = 1e-42
Identities = 100/363 (27%), Positives = 175/363 (48%), Gaps = 30/363 (8%)
Query: 597 TFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSIL--LRT 654
T I+VGGG + A +LRQ GFTG+L+ +DE LPY+R LSK + ++ L +
Sbjct: 5 TIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLP 64
Query: 655 EEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNK 714
++++N++H+ G I + +++ L +G S + ++++ATG++ R + D + +
Sbjct: 65 ANWWQENNVHLHSG-VTIKTLGRDTRELVLTNGESWHWDQLFIATGAAARPLPLLDALGE 123
Query: 715 -VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVV-------GRG 766
F LR DA + + PE +VV++G+ IG+E AA + VTV+ GR
Sbjct: 124 RCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRN 183
Query: 767 AVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLV 826
A P V + + + GV+ ++ + EK ++T L +G T+ AD+V
Sbjct: 184 APPP-------VQRYLLQRHQQAGVRILLNNAIEHVVDGEKVELT---LQSGETLQADVV 233
Query: 827 IVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYA--PLHSFYNKNA 884
I GIG N ++ +V++E T P ++AGGD+A + + +
Sbjct: 234 IYGIGISANDQLAREANLDTAN--GIVIDEACRTCDPAIFAGGDVAITRLDNGALHRCES 291
Query: 885 SIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLE 944
++ A +IAA M+ L P+FW+ + +F G G + G+ E
Sbjct: 292 ----WENANNQAQIAAAAMLGLPLPLLPPPWFWSDQYSDNLQFIGDMRGDDWL-CRGNPE 346
Query: 945 ALK 947
K
Sbjct: 347 TQK 349
|
Length = 396 |
| >gnl|CDD|170080 PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Score = 161 bits (408), Expect = 1e-42
Identities = 100/363 (27%), Positives = 175/363 (48%), Gaps = 30/363 (8%)
Query: 1068 TFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSIL--LRT 1125
T I+VGGG + A +LRQ GFTG+L+ +DE LPY+R LSK + ++ L +
Sbjct: 5 TIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLP 64
Query: 1126 EEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNK 1185
++++N++H+ G I + +++ L +G S + ++++ATG++ R + D + +
Sbjct: 65 ANWWQENNVHLHSG-VTIKTLGRDTRELVLTNGESWHWDQLFIATGAAARPLPLLDALGE 123
Query: 1186 -VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVV-------GRG 1237
F LR DA + + PE +VV++G+ IG+E AA + VTV+ GR
Sbjct: 124 RCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRN 183
Query: 1238 AVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLV 1297
A P V + + + GV+ ++ + EK ++T L +G T+ AD+V
Sbjct: 184 APPP-------VQRYLLQRHQQAGVRILLNNAIEHVVDGEKVELT---LQSGETLQADVV 233
Query: 1298 IVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYA--PLHSFYNKNA 1355
I GIG N ++ +V++E T P ++AGGD+A + + +
Sbjct: 234 IYGIGISANDQLAREANLDTAN--GIVIDEACRTCDPAIFAGGDVAITRLDNGALHRCES 291
Query: 1356 SIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLE 1415
++ A +IAA M+ L P+FW+ + +F G G + G+ E
Sbjct: 292 ----WENANNQAQIAAAAMLGLPLPLLPPPWFWSDQYSDNLQFIGDMRGDDWL-CRGNPE 346
Query: 1416 ALK 1418
K
Sbjct: 347 TQK 349
|
Length = 396 |
| >gnl|CDD|239560 cd03478, Rieske_AIFL_N, AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox) | Back alignment and domain information |
|---|
Score = 132 bits (335), Expect = 2e-36
Identities = 40/61 (65%), Positives = 50/61 (81%)
Query: 506 NIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQN 565
++A+G KC HYGAPL KG L DGR+RCPWHGACFN+ TGDIED P +DSLPCY+V +++
Sbjct: 32 EVHAIGAKCPHYGAPLAKGVLTDGRIRCPWHGACFNLRTGDIEDAPALDSLPCYEVEVED 91
Query: 566 D 566
Sbjct: 92 G 92
|
The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner. Length = 95 |
| >gnl|CDD|239560 cd03478, Rieske_AIFL_N, AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox) | Back alignment and domain information |
|---|
Score = 132 bits (335), Expect = 2e-36
Identities = 40/61 (65%), Positives = 50/61 (81%)
Query: 977 NIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQN 1036
++A+G KC HYGAPL KG L DGR+RCPWHGACFN+ TGDIED P +DSLPCY+V +++
Sbjct: 32 EVHAIGAKCPHYGAPLAKGVLTDGRIRCPWHGACFNLRTGDIEDAPALDSLPCYEVEVED 91
Query: 1037 D 1037
Sbjct: 92 G 92
|
The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner. Length = 95 |
| >gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 2e-31
Identities = 81/281 (28%), Positives = 137/281 (48%), Gaps = 15/281 (5%)
Query: 47 IVVGGGPSGATCVETLRQNGFTGKLYFIT---DENFLPYDRVKLSKQL--DIKADSILLR 101
+++G G +G +E L ++ LY IT +E Y+R+ LS L + A+ I L
Sbjct: 7 VIIGNGMAGHRTIEELLESA--PDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLN 64
Query: 102 TEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN 161
++Y++N I + G+K+I + K + G ++ + K+ +ATGS P I G +
Sbjct: 65 RNDWYEENGITLYTGEKVIQ-IDRANKVVTTDAGRTVSYDKLIIATGSYP-FILPIPGSD 122
Query: 162 K--VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQ 219
VF RT++D + + VVIG +G+EAA VTVV +
Sbjct: 123 LPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLME 182
Query: 220 ESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 279
L + G + + E G+K +++ N +K V +GT IPADLV++ +G
Sbjct: 183 RQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVGEDK--VEGVRFADGTEIPADLVVMAVG 240
Query: 280 TVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA 320
N G+ +N + +VVN+Y++T+ P +YA G+ A
Sbjct: 241 IRPNDELAKEAGLAVN--RGIVVNDYMQTSDPDIYAVGECA 279
|
Length = 793 |
| >gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 2e-31
Identities = 81/281 (28%), Positives = 137/281 (48%), Gaps = 15/281 (5%)
Query: 599 IVVGGGPSGATCVETLRQNGFTGKLYFIT---DENFLPYDRVKLSKQL--DIKADSILLR 653
+++G G +G +E L ++ LY IT +E Y+R+ LS L + A+ I L
Sbjct: 7 VIIGNGMAGHRTIEELLESA--PDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLN 64
Query: 654 TEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN 713
++Y++N I + G+K+I + K + G ++ + K+ +ATGS P I G +
Sbjct: 65 RNDWYEENGITLYTGEKVIQ-IDRANKVVTTDAGRTVSYDKLIIATGSYP-FILPIPGSD 122
Query: 714 K--VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQ 771
VF RT++D + + VVIG +G+EAA VTVV +
Sbjct: 123 LPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLME 182
Query: 772 ESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 831
L + G + + E G+K +++ N +K V +GT IPADLV++ +G
Sbjct: 183 RQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVGEDK--VEGVRFADGTEIPADLVVMAVG 240
Query: 832 TVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA 872
N G+ +N + +VVN+Y++T+ P +YA G+ A
Sbjct: 241 IRPNDELAKEAGLAVN--RGIVVNDYMQTSDPDIYAVGECA 279
|
Length = 793 |
| >gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 2e-31
Identities = 81/281 (28%), Positives = 137/281 (48%), Gaps = 15/281 (5%)
Query: 1070 IVVGGGPSGATCVETLRQNGFTGKLYFIT---DENFLPYDRVKLSKQL--DIKADSILLR 1124
+++G G +G +E L ++ LY IT +E Y+R+ LS L + A+ I L
Sbjct: 7 VIIGNGMAGHRTIEELLESA--PDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLN 64
Query: 1125 TEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN 1184
++Y++N I + G+K+I + K + G ++ + K+ +ATGS P I G +
Sbjct: 65 RNDWYEENGITLYTGEKVIQ-IDRANKVVTTDAGRTVSYDKLIIATGSYP-FILPIPGSD 122
Query: 1185 K--VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQ 1242
VF RT++D + + VVIG +G+EAA VTVV +
Sbjct: 123 LPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLME 182
Query: 1243 ESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 1302
L + G + + E G+K +++ N +K V +GT IPADLV++ +G
Sbjct: 183 RQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVGEDK--VEGVRFADGTEIPADLVVMAVG 240
Query: 1303 TVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA 1343
N G+ +N + +VVN+Y++T+ P +YA G+ A
Sbjct: 241 IRPNDELAKEAGLAVN--RGIVVNDYMQTSDPDIYAVGECA 279
|
Length = 793 |
| >gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 1e-29
Identities = 86/273 (31%), Positives = 131/273 (47%), Gaps = 38/273 (13%)
Query: 103 EEFYKDNDIHVIKGK-KIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN 161
E K N + VI+G+ + + + ++ +D +I I +ATGS PR G++
Sbjct: 101 EGLLKKNGVDVIRGEARFVDPHTV---EVTGEDKETITADNIIIATGSRPRIPPGP-GID 156
Query: 162 KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA-AFCASKVKSVTVVGRGA--VPF 218
L DA + P+S +V++G +IG+E A F A K VTVV RG +P
Sbjct: 157 GARIL-DSSDALF-LLEL-PKS-LVIVGGGYIGLEFASVFAALGSK-VTVVERGDRILPG 211
Query: 219 QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 278
++ E+ + +TK E GVK ++ V++ EK + + G TI AD V+V I
Sbjct: 212 ED---PEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAI 268
Query: 279 GTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGH 336
G NT+ L+ GVEL+ + + V++ + TNVPG+YA GD+ IG
Sbjct: 269 GRKPNTDGLGLENAGVELDDRGFIKVDDQMTTNVPGIYAIGDV--------------IGG 314
Query: 337 YQL---AQYHGRIAALNMVEKKTSLS---TIPF 363
L A GRIAA N+ K + IP
Sbjct: 315 PMLAHVAMAEGRIAAENIAGGKRTPIDYRLIPS 347
|
Length = 454 |
| >gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 1e-29
Identities = 86/273 (31%), Positives = 131/273 (47%), Gaps = 38/273 (13%)
Query: 655 EEFYKDNDIHVIKGK-KIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN 713
E K N + VI+G+ + + + ++ +D +I I +ATGS PR G++
Sbjct: 101 EGLLKKNGVDVIRGEARFVDPHTV---EVTGEDKETITADNIIIATGSRPRIPPGP-GID 156
Query: 714 KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA-AFCASKVKSVTVVGRGA--VPF 770
L DA + P+S +V++G +IG+E A F A K VTVV RG +P
Sbjct: 157 GARIL-DSSDALF-LLEL-PKS-LVIVGGGYIGLEFASVFAALGSK-VTVVERGDRILPG 211
Query: 771 QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 830
++ E+ + +TK E GVK ++ V++ EK + + G TI AD V+V I
Sbjct: 212 ED---PEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAI 268
Query: 831 GTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGH 888
G NT+ L+ GVEL+ + + V++ + TNVPG+YA GD+ IG
Sbjct: 269 GRKPNTDGLGLENAGVELDDRGFIKVDDQMTTNVPGIYAIGDV--------------IGG 314
Query: 889 YQL---AQYHGRIAALNMVEKKTSLS---TIPF 915
L A GRIAA N+ K + IP
Sbjct: 315 PMLAHVAMAEGRIAAENIAGGKRTPIDYRLIPS 347
|
Length = 454 |
| >gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 1e-29
Identities = 86/273 (31%), Positives = 131/273 (47%), Gaps = 38/273 (13%)
Query: 1126 EEFYKDNDIHVIKGK-KIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN 1184
E K N + VI+G+ + + + ++ +D +I I +ATGS PR G++
Sbjct: 101 EGLLKKNGVDVIRGEARFVDPHTV---EVTGEDKETITADNIIIATGSRPRIPPGP-GID 156
Query: 1185 KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA-AFCASKVKSVTVVGRGA--VPF 1241
L DA + P+S +V++G +IG+E A F A K VTVV RG +P
Sbjct: 157 GARIL-DSSDALF-LLEL-PKS-LVIVGGGYIGLEFASVFAALGSK-VTVVERGDRILPG 211
Query: 1242 QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 1301
++ E+ + +TK E GVK ++ V++ EK + + G TI AD V+V I
Sbjct: 212 ED---PEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAI 268
Query: 1302 GTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGH 1359
G NT+ L+ GVEL+ + + V++ + TNVPG+YA GD+ IG
Sbjct: 269 GRKPNTDGLGLENAGVELDDRGFIKVDDQMTTNVPGIYAIGDV--------------IGG 314
Query: 1360 YQL---AQYHGRIAALNMVEKKTSLS---TIPF 1386
L A GRIAA N+ K + IP
Sbjct: 315 PMLAHVAMAEGRIAAENIAGGKRTPIDYRLIPS 347
|
Length = 454 |
| >gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 5e-27
Identities = 93/364 (25%), Positives = 145/364 (39%), Gaps = 73/364 (20%)
Query: 47 IVVGGGPSGATCVETLRQNGFTGKLYFITDENF---------LP----------YDRVKL 87
IV+GGGP G Q G K+ + E +P YD +K
Sbjct: 5 IVIGGGPGGYVAAIRAAQLGL--KVALVEKEYLGGTCLNVGCIPTKALLHSAEVYDEIKH 62
Query: 88 SKQLDIKADSILLRTEE------------------FYKDNDIHVIKGKKIISDSELNEKK 129
+K L I+ +++ + E+ K N + VIKG+ D
Sbjct: 63 AKDLGIEVENVSVDWEKMQKRKNKVVKKLVGGVSGLLKKNKVTVIKGEAKFLDP----GT 118
Query: 130 IKLQDGT---SIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVV 186
+ + +++ I +ATGS PR++ + + T A + PES +V
Sbjct: 119 VSVTGENGEETLEAKNIIIATGSRPRSLPGPFDFDGKVVI-TSTGA--LNLEEVPES-LV 174
Query: 187 VIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKAN 246
+IG IG+E A+ AS VTV+ EV + + K + KGVK +
Sbjct: 175 IIGGGVIGVEFASIFASLGSKVTVI-EMLDRILPGEDAEVSKVLQKALKKKGVKILTNTK 233
Query: 247 VSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNE 304
V++ EKN+ T+ + V+V +G NT L+ GVEL+ + +VV+E
Sbjct: 234 VTAVEKNDDQVTYENKGGETETLTGEKVLVAVGRKPNTEGLGLEKLGVELDERGRIVVDE 293
Query: 305 YLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQ---YHGRIAA---LNMVEKKTSL 358
Y+ TNVPG+YA GD+ IG LA + G +AA
Sbjct: 294 YMRTNVPGIYAIGDV--------------IGGPMLAHVASHEGIVAAENIAGKEPAHIDY 339
Query: 359 STIP 362
+P
Sbjct: 340 DAVP 343
|
This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. Length = 460 |
| >gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 5e-27
Identities = 93/364 (25%), Positives = 145/364 (39%), Gaps = 73/364 (20%)
Query: 599 IVVGGGPSGATCVETLRQNGFTGKLYFITDENF---------LP----------YDRVKL 639
IV+GGGP G Q G K+ + E +P YD +K
Sbjct: 5 IVIGGGPGGYVAAIRAAQLGL--KVALVEKEYLGGTCLNVGCIPTKALLHSAEVYDEIKH 62
Query: 640 SKQLDIKADSILLRTEE------------------FYKDNDIHVIKGKKIISDSELNEKK 681
+K L I+ +++ + E+ K N + VIKG+ D
Sbjct: 63 AKDLGIEVENVSVDWEKMQKRKNKVVKKLVGGVSGLLKKNKVTVIKGEAKFLDP----GT 118
Query: 682 IKLQDGT---SIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVV 738
+ + +++ I +ATGS PR++ + + T A + PES +V
Sbjct: 119 VSVTGENGEETLEAKNIIIATGSRPRSLPGPFDFDGKVVI-TSTGA--LNLEEVPES-LV 174
Query: 739 VIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKAN 798
+IG IG+E A+ AS VTV+ EV + + K + KGVK +
Sbjct: 175 IIGGGVIGVEFASIFASLGSKVTVI-EMLDRILPGEDAEVSKVLQKALKKKGVKILTNTK 233
Query: 799 VSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNE 856
V++ EKN+ T+ + V+V +G NT L+ GVEL+ + +VV+E
Sbjct: 234 VTAVEKNDDQVTYENKGGETETLTGEKVLVAVGRKPNTEGLGLEKLGVELDERGRIVVDE 293
Query: 857 YLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQ---YHGRIAA---LNMVEKKTSL 910
Y+ TNVPG+YA GD+ IG LA + G +AA
Sbjct: 294 YMRTNVPGIYAIGDV--------------IGGPMLAHVASHEGIVAAENIAGKEPAHIDY 339
Query: 911 STIP 914
+P
Sbjct: 340 DAVP 343
|
This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. Length = 460 |
| >gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 5e-27
Identities = 93/364 (25%), Positives = 145/364 (39%), Gaps = 73/364 (20%)
Query: 1070 IVVGGGPSGATCVETLRQNGFTGKLYFITDENF---------LP----------YDRVKL 1110
IV+GGGP G Q G K+ + E +P YD +K
Sbjct: 5 IVIGGGPGGYVAAIRAAQLGL--KVALVEKEYLGGTCLNVGCIPTKALLHSAEVYDEIKH 62
Query: 1111 SKQLDIKADSILLRTEE------------------FYKDNDIHVIKGKKIISDSELNEKK 1152
+K L I+ +++ + E+ K N + VIKG+ D
Sbjct: 63 AKDLGIEVENVSVDWEKMQKRKNKVVKKLVGGVSGLLKKNKVTVIKGEAKFLDP----GT 118
Query: 1153 IKLQDGT---SIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVV 1209
+ + +++ I +ATGS PR++ + + T A + PES +V
Sbjct: 119 VSVTGENGEETLEAKNIIIATGSRPRSLPGPFDFDGKVVI-TSTGA--LNLEEVPES-LV 174
Query: 1210 VIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKAN 1269
+IG IG+E A+ AS VTV+ EV + + K + KGVK +
Sbjct: 175 IIGGGVIGVEFASIFASLGSKVTVI-EMLDRILPGEDAEVSKVLQKALKKKGVKILTNTK 233
Query: 1270 VSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNE 1327
V++ EKN+ T+ + V+V +G NT L+ GVEL+ + +VV+E
Sbjct: 234 VTAVEKNDDQVTYENKGGETETLTGEKVLVAVGRKPNTEGLGLEKLGVELDERGRIVVDE 293
Query: 1328 YLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQ---YHGRIAA---LNMVEKKTSL 1381
Y+ TNVPG+YA GD+ IG LA + G +AA
Sbjct: 294 YMRTNVPGIYAIGDV--------------IGGPMLAHVASHEGIVAAENIAGKEPAHIDY 339
Query: 1382 STIP 1385
+P
Sbjct: 340 DAVP 343
|
This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. Length = 460 |
| >gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 5e-24
Identities = 70/257 (27%), Positives = 120/257 (46%), Gaps = 14/257 (5%)
Query: 103 EEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIY----LATGSSPRTISQAD 158
E F K I V ++I ++ + + + T+ + + Y L+ G+SP + +
Sbjct: 51 EVFIKKRGIDVKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGASPIVPN-IE 109
Query: 159 GVNK--VFYLRTVEDANNIAPHITPES--NVVVIGSSFIGMEAAAFCASKVKSVTVVGRG 214
G+N VF LR +ED + I +I NVV+IG +IG+E A + K+VT++ R
Sbjct: 110 GINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRS 169
Query: 215 AVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLV 274
+ +E+ + + + + + + V S E E+ V +G AD+V
Sbjct: 170 ERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGEERVKV----FTSGGVYQADMV 225
Query: 275 IVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASI 334
I+ G N+ G++L A+ VNE +T+VP +YA GD+A + + K A +
Sbjct: 226 ILATGIKPNSELAKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAES-HNIITKKPAWV 284
Query: 335 GHYQLAQYHGRIAALNM 351
A GRIA N+
Sbjct: 285 PLAWGANKMGRIAGENI 301
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol [Cellular processes, Detoxification]. Length = 427 |
| >gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 5e-24
Identities = 70/257 (27%), Positives = 120/257 (46%), Gaps = 14/257 (5%)
Query: 655 EEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIY----LATGSSPRTISQAD 710
E F K I V ++I ++ + + + T+ + + Y L+ G+SP + +
Sbjct: 51 EVFIKKRGIDVKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGASPIVPN-IE 109
Query: 711 GVNK--VFYLRTVEDANNIAPHITPES--NVVVIGSSFIGMEAAAFCASKVKSVTVVGRG 766
G+N VF LR +ED + I +I NVV+IG +IG+E A + K+VT++ R
Sbjct: 110 GINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRS 169
Query: 767 AVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLV 826
+ +E+ + + + + + + V S E E+ V +G AD+V
Sbjct: 170 ERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGEERVKV----FTSGGVYQADMV 225
Query: 827 IVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASI 886
I+ G N+ G++L A+ VNE +T+VP +YA GD+A + + K A +
Sbjct: 226 ILATGIKPNSELAKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAES-HNIITKKPAWV 284
Query: 887 GHYQLAQYHGRIAALNM 903
A GRIA N+
Sbjct: 285 PLAWGANKMGRIAGENI 301
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol [Cellular processes, Detoxification]. Length = 427 |
| >gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 5e-24
Identities = 70/257 (27%), Positives = 120/257 (46%), Gaps = 14/257 (5%)
Query: 1126 EEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIY----LATGSSPRTISQAD 1181
E F K I V ++I ++ + + + T+ + + Y L+ G+SP + +
Sbjct: 51 EVFIKKRGIDVKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGASPIVPN-IE 109
Query: 1182 GVNK--VFYLRTVEDANNIAPHITPES--NVVVIGSSFIGMEAAAFCASKVKSVTVVGRG 1237
G+N VF LR +ED + I +I NVV+IG +IG+E A + K+VT++ R
Sbjct: 110 GINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRS 169
Query: 1238 AVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLV 1297
+ +E+ + + + + + + V S E E+ V +G AD+V
Sbjct: 170 ERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGEERVKV----FTSGGVYQADMV 225
Query: 1298 IVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASI 1357
I+ G N+ G++L A+ VNE +T+VP +YA GD+A + + K A +
Sbjct: 226 ILATGIKPNSELAKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAES-HNIITKKPAWV 284
Query: 1358 GHYQLAQYHGRIAALNM 1374
A GRIA N+
Sbjct: 285 PLAWGANKMGRIAGENI 301
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol [Cellular processes, Detoxification]. Length = 427 |
| >gnl|CDD|233700 TIGR02053, MerA, mercuric reductase | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 1e-22
Identities = 85/340 (25%), Positives = 138/340 (40%), Gaps = 52/340 (15%)
Query: 48 VVGGGPSGATCV-------ETLRQNG----FTGKLYFITDENFLPYDRVKLSKQLDIKAD 96
+V GP G TCV + L + + K F + D +L + +
Sbjct: 28 MVERGPLGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELLEGKREVVE 87
Query: 97 SILLRTEEF---YKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYL-ATGSSPR 152
LR E++ + ++G+ D K +K+ G + K +L ATG+ P
Sbjct: 88 E--LRHEKYEDVLSSYGVDYLRGRARFKD----PKTVKVDLGREVRGAKRFLIATGARPA 141
Query: 153 TISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVG 212
I G+ + YL + E +A PES + VIG IG+E A A VT++
Sbjct: 142 -IPPIPGLKEAGYLTSEE---ALALDRIPES-LAVIGGGAIGVELAQAFARLGSEVTILQ 196
Query: 213 R-GAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKN-EKNDVTAANLDNGTTIP 270
R + +E E+ + + +G++ V A V + +T +
Sbjct: 197 RSDRLLPREE--PEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVE 254
Query: 271 ADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFY 328
AD ++V G NT+ L+ GV+L+ + ++V+E L T+ PG+YA GD+
Sbjct: 255 ADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRTSNPGIYAAGDV--------- 305
Query: 329 NKNASIGHYQL---AQYHGRIAALNMV---EKKTSLSTIP 362
G QL A G +AA N + K L IP
Sbjct: 306 -----TGGLQLEYVAAKEGVVAAENALGGANAKLDLLVIP 340
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH [Cellular processes, Detoxification]. Length = 463 |
| >gnl|CDD|233700 TIGR02053, MerA, mercuric reductase | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 1e-22
Identities = 85/340 (25%), Positives = 138/340 (40%), Gaps = 52/340 (15%)
Query: 600 VVGGGPSGATCV-------ETLRQNG----FTGKLYFITDENFLPYDRVKLSKQLDIKAD 648
+V GP G TCV + L + + K F + D +L + +
Sbjct: 28 MVERGPLGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELLEGKREVVE 87
Query: 649 SILLRTEEF---YKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYL-ATGSSPR 704
LR E++ + ++G+ D K +K+ G + K +L ATG+ P
Sbjct: 88 E--LRHEKYEDVLSSYGVDYLRGRARFKD----PKTVKVDLGREVRGAKRFLIATGARPA 141
Query: 705 TISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVG 764
I G+ + YL + E +A PES + VIG IG+E A A VT++
Sbjct: 142 -IPPIPGLKEAGYLTSEE---ALALDRIPES-LAVIGGGAIGVELAQAFARLGSEVTILQ 196
Query: 765 R-GAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKN-EKNDVTAANLDNGTTIP 822
R + +E E+ + + +G++ V A V + +T +
Sbjct: 197 RSDRLLPREE--PEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVE 254
Query: 823 ADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFY 880
AD ++V G NT+ L+ GV+L+ + ++V+E L T+ PG+YA GD+
Sbjct: 255 ADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRTSNPGIYAAGDV--------- 305
Query: 881 NKNASIGHYQL---AQYHGRIAALNMV---EKKTSLSTIP 914
G QL A G +AA N + K L IP
Sbjct: 306 -----TGGLQLEYVAAKEGVVAAENALGGANAKLDLLVIP 340
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH [Cellular processes, Detoxification]. Length = 463 |
| >gnl|CDD|233700 TIGR02053, MerA, mercuric reductase | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 1e-22
Identities = 85/340 (25%), Positives = 138/340 (40%), Gaps = 52/340 (15%)
Query: 1071 VVGGGPSGATCV-------ETLRQNG----FTGKLYFITDENFLPYDRVKLSKQLDIKAD 1119
+V GP G TCV + L + + K F + D +L + +
Sbjct: 28 MVERGPLGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELLEGKREVVE 87
Query: 1120 SILLRTEEF---YKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYL-ATGSSPR 1175
LR E++ + ++G+ D K +K+ G + K +L ATG+ P
Sbjct: 88 E--LRHEKYEDVLSSYGVDYLRGRARFKD----PKTVKVDLGREVRGAKRFLIATGARPA 141
Query: 1176 TISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVG 1235
I G+ + YL + E +A PES + VIG IG+E A A VT++
Sbjct: 142 -IPPIPGLKEAGYLTSEE---ALALDRIPES-LAVIGGGAIGVELAQAFARLGSEVTILQ 196
Query: 1236 R-GAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKN-EKNDVTAANLDNGTTIP 1293
R + +E E+ + + +G++ V A V + +T +
Sbjct: 197 RSDRLLPREE--PEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVE 254
Query: 1294 ADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFY 1351
AD ++V G NT+ L+ GV+L+ + ++V+E L T+ PG+YA GD+
Sbjct: 255 ADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRTSNPGIYAAGDV--------- 305
Query: 1352 NKNASIGHYQL---AQYHGRIAALNMV---EKKTSLSTIP 1385
G QL A G +AA N + K L IP
Sbjct: 306 -----TGGLQLEYVAAKEGVVAAENALGGANAKLDLLVIP 340
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH [Cellular processes, Detoxification]. Length = 463 |
| >gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 8e-22
Identities = 78/266 (29%), Positives = 113/266 (42%), Gaps = 53/266 (19%)
Query: 107 KDNDIHVIKGK-KIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTI---SQADGV-- 160
K I IKG + + +++ +G I+ I +ATGS I G
Sbjct: 103 KKPKIDKIKGTARFVDP-----NTVEV-NGERIEAKNIVIATGSRVPPIPGVWLILGDRL 156
Query: 161 ---NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCASKVKSVTVVGRGA- 215
+ F L + P+S + VIG IG+E A VK VTV RG
Sbjct: 157 LTSDDAFELDKL-----------PKS-LAVIGGGVIGLELGQALSRLGVK-VTVFERGDR 203
Query: 216 -VPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGT-TIPADL 273
+P ++ EV ++ K+ + K + A V+S EK+ V T TI AD
Sbjct: 204 ILPLED---PEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADY 259
Query: 274 VIVGIGTVLNTNYLDGK--GVELNGQKAVVVNEYLETNVPGVYAGGDI-AYAPL-HSFYN 329
V+V G NT+ L + G+EL+ + VV+E+ +T+VPG+YA GD+ PL H
Sbjct: 260 VLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVPGIYAAGDVNGKPPLLHE--- 316
Query: 330 KNASIGHYQLAQYHGRIAALNMVEKK 355
A GRIAA N
Sbjct: 317 ----------AADEGRIAAENAAGDV 332
|
Length = 460 |
| >gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 8e-22
Identities = 78/266 (29%), Positives = 113/266 (42%), Gaps = 53/266 (19%)
Query: 659 KDNDIHVIKGK-KIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTI---SQADGV-- 712
K I IKG + + +++ +G I+ I +ATGS I G
Sbjct: 103 KKPKIDKIKGTARFVDP-----NTVEV-NGERIEAKNIVIATGSRVPPIPGVWLILGDRL 156
Query: 713 ---NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCASKVKSVTVVGRGA- 767
+ F L + P+S + VIG IG+E A VK VTV RG
Sbjct: 157 LTSDDAFELDKL-----------PKS-LAVIGGGVIGLELGQALSRLGVK-VTVFERGDR 203
Query: 768 -VPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGT-TIPADL 825
+P ++ EV ++ K+ + K + A V+S EK+ V T TI AD
Sbjct: 204 ILPLED---PEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADY 259
Query: 826 VIVGIGTVLNTNYLDGK--GVELNGQKAVVVNEYLETNVPGVYAGGDI-AYAPL-HSFYN 881
V+V G NT+ L + G+EL+ + VV+E+ +T+VPG+YA GD+ PL H
Sbjct: 260 VLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVPGIYAAGDVNGKPPLLHE--- 316
Query: 882 KNASIGHYQLAQYHGRIAALNMVEKK 907
A GRIAA N
Sbjct: 317 ----------AADEGRIAAENAAGDV 332
|
Length = 460 |
| >gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 8e-22
Identities = 78/266 (29%), Positives = 113/266 (42%), Gaps = 53/266 (19%)
Query: 1130 KDNDIHVIKGK-KIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTI---SQADGV-- 1183
K I IKG + + +++ +G I+ I +ATGS I G
Sbjct: 103 KKPKIDKIKGTARFVDP-----NTVEV-NGERIEAKNIVIATGSRVPPIPGVWLILGDRL 156
Query: 1184 ---NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCASKVKSVTVVGRGA- 1238
+ F L + P+S + VIG IG+E A VK VTV RG
Sbjct: 157 LTSDDAFELDKL-----------PKS-LAVIGGGVIGLELGQALSRLGVK-VTVFERGDR 203
Query: 1239 -VPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGT-TIPADL 1296
+P ++ EV ++ K+ + K + A V+S EK+ V T TI AD
Sbjct: 204 ILPLED---PEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADY 259
Query: 1297 VIVGIGTVLNTNYLDGK--GVELNGQKAVVVNEYLETNVPGVYAGGDI-AYAPL-HSFYN 1352
V+V G NT+ L + G+EL+ + VV+E+ +T+VPG+YA GD+ PL H
Sbjct: 260 VLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVPGIYAAGDVNGKPPLLHE--- 316
Query: 1353 KNASIGHYQLAQYHGRIAALNMVEKK 1378
A GRIAA N
Sbjct: 317 ----------AADEGRIAAENAAGDV 332
|
Length = 460 |
| >gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated | Back alignment and domain information |
|---|
Score = 99.1 bits (248), Expect = 2e-21
Identities = 61/248 (24%), Positives = 107/248 (43%), Gaps = 41/248 (16%)
Query: 134 DGTSIDFTKIYLATGSSPRTISQADGVNKVFYL--RTVEDANNIAPHITPESNVVVIGSS 191
G ++ +I++ TG+ I G+++V YL T+ + + H+ V+IG
Sbjct: 128 GGETLRAKRIFINTGARAA-IPPIPGLDEVGYLTNETIFSLDELPEHL------VIIGGG 180
Query: 192 FIGME-AAAFC--ASKVKSVTVVGRGAVPFQESLGKE---VGERITKLFESKGVKFVMKA 245
+IG+E A F S+V TV+ RG L +E V + ++ E +G+ + A
Sbjct: 181 YIGLEFAQMFRRFGSEV---TVIERGP----RLLPREDEDVAAAVREILEREGIDVRLNA 233
Query: 246 NVSSFEKN-EKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVV 302
E++ + V I ++V +G V NT+ L+ GVE + + + V
Sbjct: 234 ECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKV 293
Query: 303 NEYLETNVPGVYAGGDI--AYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEK-KTSLS 359
++ L T PG+YA GD A H+ YN RI A N+++ + +S
Sbjct: 294 DDQLRTTNPGIYAAGDCNGRGAFTHTAYND-------------ARIVAANLLDGGRRKVS 340
Query: 360 TIPFFWTM 367
+
Sbjct: 341 DRIVPYAT 348
|
Length = 463 |
| >gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated | Back alignment and domain information |
|---|
Score = 99.1 bits (248), Expect = 2e-21
Identities = 61/248 (24%), Positives = 107/248 (43%), Gaps = 41/248 (16%)
Query: 686 DGTSIDFTKIYLATGSSPRTISQADGVNKVFYL--RTVEDANNIAPHITPESNVVVIGSS 743
G ++ +I++ TG+ I G+++V YL T+ + + H+ V+IG
Sbjct: 128 GGETLRAKRIFINTGARAA-IPPIPGLDEVGYLTNETIFSLDELPEHL------VIIGGG 180
Query: 744 FIGME-AAAFC--ASKVKSVTVVGRGAVPFQESLGKE---VGERITKLFESKGVKFVMKA 797
+IG+E A F S+V TV+ RG L +E V + ++ E +G+ + A
Sbjct: 181 YIGLEFAQMFRRFGSEV---TVIERGP----RLLPREDEDVAAAVREILEREGIDVRLNA 233
Query: 798 NVSSFEKN-EKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVV 854
E++ + V I ++V +G V NT+ L+ GVE + + + V
Sbjct: 234 ECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKV 293
Query: 855 NEYLETNVPGVYAGGDI--AYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEK-KTSLS 911
++ L T PG+YA GD A H+ YN RI A N+++ + +S
Sbjct: 294 DDQLRTTNPGIYAAGDCNGRGAFTHTAYND-------------ARIVAANLLDGGRRKVS 340
Query: 912 TIPFFWTM 919
+
Sbjct: 341 DRIVPYAT 348
|
Length = 463 |
| >gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated | Back alignment and domain information |
|---|
Score = 99.1 bits (248), Expect = 2e-21
Identities = 61/248 (24%), Positives = 107/248 (43%), Gaps = 41/248 (16%)
Query: 1157 DGTSIDFTKIYLATGSSPRTISQADGVNKVFYL--RTVEDANNIAPHITPESNVVVIGSS 1214
G ++ +I++ TG+ I G+++V YL T+ + + H+ V+IG
Sbjct: 128 GGETLRAKRIFINTGARAA-IPPIPGLDEVGYLTNETIFSLDELPEHL------VIIGGG 180
Query: 1215 FIGME-AAAFC--ASKVKSVTVVGRGAVPFQESLGKE---VGERITKLFESKGVKFVMKA 1268
+IG+E A F S+V TV+ RG L +E V + ++ E +G+ + A
Sbjct: 181 YIGLEFAQMFRRFGSEV---TVIERGP----RLLPREDEDVAAAVREILEREGIDVRLNA 233
Query: 1269 NVSSFEKN-EKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVV 1325
E++ + V I ++V +G V NT+ L+ GVE + + + V
Sbjct: 234 ECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKV 293
Query: 1326 NEYLETNVPGVYAGGDI--AYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEK-KTSLS 1382
++ L T PG+YA GD A H+ YN RI A N+++ + +S
Sbjct: 294 DDQLRTTNPGIYAAGDCNGRGAFTHTAYND-------------ARIVAANLLDGGRRKVS 340
Query: 1383 TIPFFWTM 1390
+
Sbjct: 341 DRIVPYAT 348
|
Length = 463 |
| >gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 7e-21
Identities = 72/268 (26%), Positives = 121/268 (45%), Gaps = 15/268 (5%)
Query: 101 RTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQD-GTSIDFTKIY----LATGSSPRTIS 155
RT E + + I V +++ + K I +++ T F Y +ATG+ P I
Sbjct: 61 RTPEEFIKSGIDVKTEHEVVK-VDAKNKTITVKNLKTGSIFNDTYDKLMIATGARP-IIP 118
Query: 156 QADGVN--KVFYLRTVEDANNIAPHITPES--NVVVIGSSFIGMEAAAFCASKVKSVTVV 211
+N V+ L+++ED + + E N+V+IG+ FIG+EA K+V ++
Sbjct: 119 PIKNINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRII 178
Query: 212 GRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPA 271
+S KE+ + + + GV+ + V S +K V D G A
Sbjct: 179 QLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIGEDK--VEGVVTDKGE-YEA 235
Query: 272 DLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKN 331
D+VIV G NT +L+ G++ A++V+EY ET++ +YA GD A + NKN
Sbjct: 236 DVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYGETSIENIYAAGDCA-TIYNIVSNKN 294
Query: 332 ASIGHYQLAQYHGRIAALNMVEKKTSLS 359
+ A GR+ N+ + S
Sbjct: 295 VYVPLATTANKLGRMVGENLAGRHVSFK 322
|
Length = 444 |
| >gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 7e-21
Identities = 72/268 (26%), Positives = 121/268 (45%), Gaps = 15/268 (5%)
Query: 653 RTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQD-GTSIDFTKIY----LATGSSPRTIS 707
RT E + + I V +++ + K I +++ T F Y +ATG+ P I
Sbjct: 61 RTPEEFIKSGIDVKTEHEVVK-VDAKNKTITVKNLKTGSIFNDTYDKLMIATGARP-IIP 118
Query: 708 QADGVN--KVFYLRTVEDANNIAPHITPES--NVVVIGSSFIGMEAAAFCASKVKSVTVV 763
+N V+ L+++ED + + E N+V+IG+ FIG+EA K+V ++
Sbjct: 119 PIKNINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRII 178
Query: 764 GRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPA 823
+S KE+ + + + GV+ + V S +K V D G A
Sbjct: 179 QLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIGEDK--VEGVVTDKGE-YEA 235
Query: 824 DLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKN 883
D+VIV G NT +L+ G++ A++V+EY ET++ +YA GD A + NKN
Sbjct: 236 DVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYGETSIENIYAAGDCA-TIYNIVSNKN 294
Query: 884 ASIGHYQLAQYHGRIAALNMVEKKTSLS 911
+ A GR+ N+ + S
Sbjct: 295 VYVPLATTANKLGRMVGENLAGRHVSFK 322
|
Length = 444 |
| >gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 7e-21
Identities = 72/268 (26%), Positives = 121/268 (45%), Gaps = 15/268 (5%)
Query: 1124 RTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQD-GTSIDFTKIY----LATGSSPRTIS 1178
RT E + + I V +++ + K I +++ T F Y +ATG+ P I
Sbjct: 61 RTPEEFIKSGIDVKTEHEVVK-VDAKNKTITVKNLKTGSIFNDTYDKLMIATGARP-IIP 118
Query: 1179 QADGVN--KVFYLRTVEDANNIAPHITPES--NVVVIGSSFIGMEAAAFCASKVKSVTVV 1234
+N V+ L+++ED + + E N+V+IG+ FIG+EA K+V ++
Sbjct: 119 PIKNINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRII 178
Query: 1235 GRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPA 1294
+S KE+ + + + GV+ + V S +K V D G A
Sbjct: 179 QLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIGEDK--VEGVVTDKGE-YEA 235
Query: 1295 DLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKN 1354
D+VIV G NT +L+ G++ A++V+EY ET++ +YA GD A + NKN
Sbjct: 236 DVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYGETSIENIYAAGDCA-TIYNIVSNKN 294
Query: 1355 ASIGHYQLAQYHGRIAALNMVEKKTSLS 1382
+ A GR+ N+ + S
Sbjct: 295 VYVPLATTANKLGRMVGENLAGRHVSFK 322
|
Length = 444 |
| >gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 94.1 bits (235), Expect = 8e-20
Identities = 76/267 (28%), Positives = 116/267 (43%), Gaps = 60/267 (22%)
Query: 107 KDNDIHVIKGK-KIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTIS--QADGVNKV 163
K N + +I+G+ K++ + + + I LATGS PR + + DG +
Sbjct: 103 KKNKVDIIRGEAKLVDPNTVRVMTED--GEQTYTAKNIILATGSRPRELPGIEIDG-RVI 159
Query: 164 FYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLG 223
+ T ++A N+ + P+S +VVIG +IG+E A+ AS VT+V
Sbjct: 160 W---TSDEALNL-DEV-PKS-LVVIGGGYIGVEFASAYASLGAEVTIV------------ 201
Query: 224 KEVGER--------ITKL----FESKGVKFVMKANVSSFEKNEKNDVTAANLDNG--TTI 269
E R I+KL + +G+K A E+ + + VT D G T+
Sbjct: 202 -EALPRILPGEDKEISKLAERALKKRGIKIKTGAKAKKVEQTD-DGVTVTLEDGGKEETL 259
Query: 270 PADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSF 327
AD V+V +G NT L+ GV+ + + V+E L TNVP +YA GDI P
Sbjct: 260 EADYVLVAVGRRPNTENLGLEELGVKTDR-GFIEVDEQLRTNVPNIYAIGDIVGGP---- 314
Query: 328 YNKNASIGHYQLAQ---YHGRIAALNM 351
LA G IAA +
Sbjct: 315 ----------MLAHKASAEGIIAAEAI 331
|
Length = 462 |
| >gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 94.1 bits (235), Expect = 8e-20
Identities = 76/267 (28%), Positives = 116/267 (43%), Gaps = 60/267 (22%)
Query: 659 KDNDIHVIKGK-KIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTIS--QADGVNKV 715
K N + +I+G+ K++ + + + I LATGS PR + + DG +
Sbjct: 103 KKNKVDIIRGEAKLVDPNTVRVMTED--GEQTYTAKNIILATGSRPRELPGIEIDG-RVI 159
Query: 716 FYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLG 775
+ T ++A N+ + P+S +VVIG +IG+E A+ AS VT+V
Sbjct: 160 W---TSDEALNL-DEV-PKS-LVVIGGGYIGVEFASAYASLGAEVTIV------------ 201
Query: 776 KEVGER--------ITKL----FESKGVKFVMKANVSSFEKNEKNDVTAANLDNG--TTI 821
E R I+KL + +G+K A E+ + + VT D G T+
Sbjct: 202 -EALPRILPGEDKEISKLAERALKKRGIKIKTGAKAKKVEQTD-DGVTVTLEDGGKEETL 259
Query: 822 PADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSF 879
AD V+V +G NT L+ GV+ + + V+E L TNVP +YA GDI P
Sbjct: 260 EADYVLVAVGRRPNTENLGLEELGVKTDR-GFIEVDEQLRTNVPNIYAIGDIVGGP---- 314
Query: 880 YNKNASIGHYQLAQ---YHGRIAALNM 903
LA G IAA +
Sbjct: 315 ----------MLAHKASAEGIIAAEAI 331
|
Length = 462 |
| >gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 94.1 bits (235), Expect = 8e-20
Identities = 76/267 (28%), Positives = 116/267 (43%), Gaps = 60/267 (22%)
Query: 1130 KDNDIHVIKGK-KIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTIS--QADGVNKV 1186
K N + +I+G+ K++ + + + I LATGS PR + + DG +
Sbjct: 103 KKNKVDIIRGEAKLVDPNTVRVMTED--GEQTYTAKNIILATGSRPRELPGIEIDG-RVI 159
Query: 1187 FYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLG 1246
+ T ++A N+ + P+S +VVIG +IG+E A+ AS VT+V
Sbjct: 160 W---TSDEALNL-DEV-PKS-LVVIGGGYIGVEFASAYASLGAEVTIV------------ 201
Query: 1247 KEVGER--------ITKL----FESKGVKFVMKANVSSFEKNEKNDVTAANLDNG--TTI 1292
E R I+KL + +G+K A E+ + + VT D G T+
Sbjct: 202 -EALPRILPGEDKEISKLAERALKKRGIKIKTGAKAKKVEQTD-DGVTVTLEDGGKEETL 259
Query: 1293 PADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSF 1350
AD V+V +G NT L+ GV+ + + V+E L TNVP +YA GDI P
Sbjct: 260 EADYVLVAVGRRPNTENLGLEELGVKTDR-GFIEVDEQLRTNVPNIYAIGDIVGGP---- 314
Query: 1351 YNKNASIGHYQLAQ---YHGRIAALNM 1374
LA G IAA +
Sbjct: 315 ----------MLAHKASAEGIIAAEAI 331
|
Length = 462 |
| >gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Score = 95.7 bits (238), Expect = 8e-20
Identities = 72/280 (25%), Positives = 138/280 (49%), Gaps = 13/280 (4%)
Query: 47 IVVGGGPSGATCVETLRQ-NGFTGKLYFITDENFLPYDRVKLSK--QLDIKADSILLRTE 103
++VG G +G C+E + + N ++ +E Y+R+ LS Q + D I L ++
Sbjct: 2 VLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSK 61
Query: 104 EFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNK 162
++Y+ + I + G+ +I D++ +K++ G ++ + K+ LATGS P I G +K
Sbjct: 62 DWYEKHGITLYTGETVIQIDTD--QKQVITDAGRTLSYDKLILATGSYPF-ILPIPGADK 118
Query: 163 --VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQE 220
V+ RT+ED + I VIG +G+EAA + V+V+ +
Sbjct: 119 KGVYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAK 178
Query: 221 SLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGT 280
L + G + + E KG+ F+++ + K D +G+++ ADL+++ G
Sbjct: 179 QLDQTAGRLLQRELEQKGLTFLLEKDTVEIVGATKAD--RIRFKDGSSLEADLIVMAAGI 236
Query: 281 VLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA 320
N G+++N ++VN+ ++T+ P +YA G+ A
Sbjct: 237 RPNDELAVSAGIKVNR--GIIVNDSMQTSDPDIYAVGECA 274
|
[Central intermediary metabolism, Nitrogen metabolism]. Length = 785 |
| >gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Score = 95.7 bits (238), Expect = 8e-20
Identities = 72/280 (25%), Positives = 138/280 (49%), Gaps = 13/280 (4%)
Query: 599 IVVGGGPSGATCVETLRQ-NGFTGKLYFITDENFLPYDRVKLSK--QLDIKADSILLRTE 655
++VG G +G C+E + + N ++ +E Y+R+ LS Q + D I L ++
Sbjct: 2 VLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSK 61
Query: 656 EFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNK 714
++Y+ + I + G+ +I D++ +K++ G ++ + K+ LATGS P I G +K
Sbjct: 62 DWYEKHGITLYTGETVIQIDTD--QKQVITDAGRTLSYDKLILATGSYPF-ILPIPGADK 118
Query: 715 --VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQE 772
V+ RT+ED + I VIG +G+EAA + V+V+ +
Sbjct: 119 KGVYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAK 178
Query: 773 SLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGT 832
L + G + + E KG+ F+++ + K D +G+++ ADL+++ G
Sbjct: 179 QLDQTAGRLLQRELEQKGLTFLLEKDTVEIVGATKAD--RIRFKDGSSLEADLIVMAAGI 236
Query: 833 VLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA 872
N G+++N ++VN+ ++T+ P +YA G+ A
Sbjct: 237 RPNDELAVSAGIKVNR--GIIVNDSMQTSDPDIYAVGECA 274
|
[Central intermediary metabolism, Nitrogen metabolism]. Length = 785 |
| >gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Score = 95.7 bits (238), Expect = 8e-20
Identities = 72/280 (25%), Positives = 138/280 (49%), Gaps = 13/280 (4%)
Query: 1070 IVVGGGPSGATCVETLRQ-NGFTGKLYFITDENFLPYDRVKLSK--QLDIKADSILLRTE 1126
++VG G +G C+E + + N ++ +E Y+R+ LS Q + D I L ++
Sbjct: 2 VLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSK 61
Query: 1127 EFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNK 1185
++Y+ + I + G+ +I D++ +K++ G ++ + K+ LATGS P I G +K
Sbjct: 62 DWYEKHGITLYTGETVIQIDTD--QKQVITDAGRTLSYDKLILATGSYPF-ILPIPGADK 118
Query: 1186 --VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQE 1243
V+ RT+ED + I VIG +G+EAA + V+V+ +
Sbjct: 119 KGVYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAK 178
Query: 1244 SLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGT 1303
L + G + + E KG+ F+++ + K D +G+++ ADL+++ G
Sbjct: 179 QLDQTAGRLLQRELEQKGLTFLLEKDTVEIVGATKAD--RIRFKDGSSLEADLIVMAAGI 236
Query: 1304 VLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA 1343
N G+++N ++VN+ ++T+ P +YA G+ A
Sbjct: 237 RPNDELAVSAGIKVNR--GIIVNDSMQTSDPDIYAVGECA 274
|
[Central intermediary metabolism, Nitrogen metabolism]. Length = 785 |
| >gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 3e-19
Identities = 58/195 (29%), Positives = 92/195 (47%), Gaps = 11/195 (5%)
Query: 127 EKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVV 186
K ++ DG I ++ +A GS P I + V Y T + + PES +V
Sbjct: 116 PKTLRTGDGEEITADQVVIAAGSRPV-IPPVIADSGVRY-HTSDTIMRLPE--LPES-LV 170
Query: 187 VIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKAN 246
++G FI E A ++ VTVV R + L ++ ER T+L + + N
Sbjct: 171 IVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLR-HLDDDISERFTELASKR-WDVRLGRN 228
Query: 247 VSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGK--GVELNGQKAVVVNE 304
V + LD+G+T+ AD+++V G V N + LD GV+++ VVV+E
Sbjct: 229 VVGVS--QDGSGVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDE 286
Query: 305 YLETNVPGVYAGGDI 319
Y T+ GV+A GD+
Sbjct: 287 YQRTSAEGVFALGDV 301
|
Length = 451 |
| >gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 3e-19
Identities = 58/195 (29%), Positives = 92/195 (47%), Gaps = 11/195 (5%)
Query: 679 EKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVV 738
K ++ DG I ++ +A GS P I + V Y T + + PES +V
Sbjct: 116 PKTLRTGDGEEITADQVVIAAGSRPV-IPPVIADSGVRY-HTSDTIMRLPE--LPES-LV 170
Query: 739 VIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKAN 798
++G FI E A ++ VTVV R + L ++ ER T+L + + N
Sbjct: 171 IVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLR-HLDDDISERFTELASKR-WDVRLGRN 228
Query: 799 VSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGK--GVELNGQKAVVVNE 856
V + LD+G+T+ AD+++V G V N + LD GV+++ VVV+E
Sbjct: 229 VVGVS--QDGSGVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDE 286
Query: 857 YLETNVPGVYAGGDI 871
Y T+ GV+A GD+
Sbjct: 287 YQRTSAEGVFALGDV 301
|
Length = 451 |
| >gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 3e-19
Identities = 58/195 (29%), Positives = 92/195 (47%), Gaps = 11/195 (5%)
Query: 1150 EKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVV 1209
K ++ DG I ++ +A GS P I + V Y T + + PES +V
Sbjct: 116 PKTLRTGDGEEITADQVVIAAGSRPV-IPPVIADSGVRY-HTSDTIMRLPE--LPES-LV 170
Query: 1210 VIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKAN 1269
++G FI E A ++ VTVV R + L ++ ER T+L + + N
Sbjct: 171 IVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLR-HLDDDISERFTELASKR-WDVRLGRN 228
Query: 1270 VSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGK--GVELNGQKAVVVNE 1327
V + LD+G+T+ AD+++V G V N + LD GV+++ VVV+E
Sbjct: 229 VVGVS--QDGSGVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDE 286
Query: 1328 YLETNVPGVYAGGDI 1342
Y T+ GV+A GD+
Sbjct: 287 YQRTSAEGVFALGDV 301
|
Length = 451 |
| >gnl|CDD|237806 PRK14727, PRK14727, putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Score = 90.0 bits (223), Expect = 2e-18
Identities = 87/344 (25%), Positives = 135/344 (39%), Gaps = 59/344 (17%)
Query: 47 IVVGGGPSGATCVET-----------------LRQNGFTGKLYFITDENFLP-YDRVKLS 88
I+ G G CV R N F G E P DR L
Sbjct: 44 IIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGV------EAVAPSIDRGLLL 97
Query: 89 KQLDIKADSILLRTEEFYK--DND--IHVIKGKKIISDSELNEKKIKLQDGTSID--FTK 142
Q + + LR ++ D + + ++KG D N ++L DG +
Sbjct: 98 HQQQARVEE--LRHAKYQSILDGNPALTLLKGYARFKDG--NTLVVRLHDGGERVLAADR 153
Query: 143 IYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCA 202
+ATGS+P TI G+ Y + E + P S + VIGSS + E A A
Sbjct: 154 CLIATGSTP-TIPPIPGLMDTPYWTSTEALFSDE---LPAS-LTVIGSSVVAAEIAQAYA 208
Query: 203 SKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAAN 262
VT++ R + F+E +GE +T FE +G++ + S E ++ V
Sbjct: 209 RLGSRVTILARSTLLFRED--PLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTG 266
Query: 263 LDNGTTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA 320
+G A+ +++ G NT+ L + GV + A+VVN +ET+ P +YA GD +
Sbjct: 267 --HGELR-AEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMETSAPDIYAAGDCS 323
Query: 321 YAPLHSFYNKNASIGHYQLAQYHGRIAALNMV--EKKTSLSTIP 362
P + +A G A +NM LS +P
Sbjct: 324 DLPQFVY-----------VAAAAGSRAGINMTGGNATLDLSAMP 356
|
Length = 479 |
| >gnl|CDD|237806 PRK14727, PRK14727, putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Score = 90.0 bits (223), Expect = 2e-18
Identities = 87/344 (25%), Positives = 135/344 (39%), Gaps = 59/344 (17%)
Query: 599 IVVGGGPSGATCVET-----------------LRQNGFTGKLYFITDENFLP-YDRVKLS 640
I+ G G CV R N F G E P DR L
Sbjct: 44 IIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGV------EAVAPSIDRGLLL 97
Query: 641 KQLDIKADSILLRTEEFYK--DND--IHVIKGKKIISDSELNEKKIKLQDGTSID--FTK 694
Q + + LR ++ D + + ++KG D N ++L DG +
Sbjct: 98 HQQQARVEE--LRHAKYQSILDGNPALTLLKGYARFKDG--NTLVVRLHDGGERVLAADR 153
Query: 695 IYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCA 754
+ATGS+P TI G+ Y + E + P S + VIGSS + E A A
Sbjct: 154 CLIATGSTP-TIPPIPGLMDTPYWTSTEALFSDE---LPAS-LTVIGSSVVAAEIAQAYA 208
Query: 755 SKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAAN 814
VT++ R + F+E +GE +T FE +G++ + S E ++ V
Sbjct: 209 RLGSRVTILARSTLLFRED--PLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTG 266
Query: 815 LDNGTTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA 872
+G A+ +++ G NT+ L + GV + A+VVN +ET+ P +YA GD +
Sbjct: 267 --HGELR-AEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMETSAPDIYAAGDCS 323
Query: 873 YAPLHSFYNKNASIGHYQLAQYHGRIAALNMV--EKKTSLSTIP 914
P + +A G A +NM LS +P
Sbjct: 324 DLPQFVY-----------VAAAAGSRAGINMTGGNATLDLSAMP 356
|
Length = 479 |
| >gnl|CDD|237806 PRK14727, PRK14727, putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Score = 90.0 bits (223), Expect = 2e-18
Identities = 87/344 (25%), Positives = 135/344 (39%), Gaps = 59/344 (17%)
Query: 1070 IVVGGGPSGATCVET-----------------LRQNGFTGKLYFITDENFLP-YDRVKLS 1111
I+ G G CV R N F G E P DR L
Sbjct: 44 IIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGV------EAVAPSIDRGLLL 97
Query: 1112 KQLDIKADSILLRTEEFYK--DND--IHVIKGKKIISDSELNEKKIKLQDGTSID--FTK 1165
Q + + LR ++ D + + ++KG D N ++L DG +
Sbjct: 98 HQQQARVEE--LRHAKYQSILDGNPALTLLKGYARFKDG--NTLVVRLHDGGERVLAADR 153
Query: 1166 IYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCA 1225
+ATGS+P TI G+ Y + E + P S + VIGSS + E A A
Sbjct: 154 CLIATGSTP-TIPPIPGLMDTPYWTSTEALFSDE---LPAS-LTVIGSSVVAAEIAQAYA 208
Query: 1226 SKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAAN 1285
VT++ R + F+E +GE +T FE +G++ + S E ++ V
Sbjct: 209 RLGSRVTILARSTLLFRED--PLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTG 266
Query: 1286 LDNGTTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA 1343
+G A+ +++ G NT+ L + GV + A+VVN +ET+ P +YA GD +
Sbjct: 267 --HGELR-AEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMETSAPDIYAAGDCS 323
Query: 1344 YAPLHSFYNKNASIGHYQLAQYHGRIAALNMV--EKKTSLSTIP 1385
P + +A G A +NM LS +P
Sbjct: 324 DLPQFVY-----------VAAAAGSRAGINMTGGNATLDLSAMP 356
|
Length = 479 |
| >gnl|CDD|239550 cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 6e-18
Identities = 25/88 (28%), Positives = 42/88 (47%)
Query: 954 NADKVLAILTVGMDPLAAQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNI 1013
++ G + + +YA+ +C+H G PL +G DG + CP HG+ F++
Sbjct: 11 PPGGGRVVVVGGGPVVVVRREGGEVYALSNRCTHQGCPLSEGEGEDGCIVCPCHGSRFDL 70
Query: 1014 ATGDIEDFPGMDSLPCYKVTIQNDDSVV 1041
TG++ P LP Y V ++ D V
Sbjct: 71 RTGEVVSGPAPRPLPKYPVKVEGDGVVW 98
|
The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis. Length = 98 |
| >gnl|CDD|239550 cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 9e-17
Identities = 24/64 (37%), Positives = 37/64 (57%)
Query: 507 IYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQND 566
+YA+ +C+H G PL +G DG + CP HG+ F++ TG++ P LP Y V ++ D
Sbjct: 35 VYALSNRCTHQGCPLSEGEGEDGCIVCPCHGSRFDLRTGEVVSGPAPRPLPKYPVKVEGD 94
Query: 567 DSVV 570
V
Sbjct: 95 GVVW 98
|
The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis. Length = 98 |
| >gnl|CDD|235779 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 2e-16
Identities = 61/226 (26%), Positives = 106/226 (46%), Gaps = 14/226 (6%)
Query: 106 YKDNDIHVIKGK-KIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKV 163
+K N I V+KG+ + E K+ +D T I + +ATGS PR + NK
Sbjct: 110 FKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPRHLPGVPFDNK- 168
Query: 164 FYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP-FQESL 222
+++ + P+ + VIG+ IG+E + VT++ A+P F +
Sbjct: 169 ---IILDNTGALNFTEVPK-KLAVIGAGVIGLELGSVWRRLGAEVTILE--ALPAFLAAA 222
Query: 223 GKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGT--TIPADLVIVGIGT 280
++V + K F +G+ + + + K A +G T+ D +IV IG
Sbjct: 223 DEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGR 282
Query: 281 VLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPL 324
V NT+ L + G++L+ + + V+++ TNVP VYA GD+ P+
Sbjct: 283 VPNTDGLGLEAVGLKLDERGFIPVDDHCRTNVPNVYAIGDVVRGPM 328
|
Length = 475 |
| >gnl|CDD|235779 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 2e-16
Identities = 61/226 (26%), Positives = 106/226 (46%), Gaps = 14/226 (6%)
Query: 658 YKDNDIHVIKGK-KIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKV 715
+K N I V+KG+ + E K+ +D T I + +ATGS PR + NK
Sbjct: 110 FKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPRHLPGVPFDNK- 168
Query: 716 FYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP-FQESL 774
+++ + P+ + VIG+ IG+E + VT++ A+P F +
Sbjct: 169 ---IILDNTGALNFTEVPK-KLAVIGAGVIGLELGSVWRRLGAEVTILE--ALPAFLAAA 222
Query: 775 GKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGT--TIPADLVIVGIGT 832
++V + K F +G+ + + + K A +G T+ D +IV IG
Sbjct: 223 DEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGR 282
Query: 833 VLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPL 876
V NT+ L + G++L+ + + V+++ TNVP VYA GD+ P+
Sbjct: 283 VPNTDGLGLEAVGLKLDERGFIPVDDHCRTNVPNVYAIGDVVRGPM 328
|
Length = 475 |
| >gnl|CDD|235779 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 2e-16
Identities = 61/226 (26%), Positives = 106/226 (46%), Gaps = 14/226 (6%)
Query: 1129 YKDNDIHVIKGK-KIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKV 1186
+K N I V+KG+ + E K+ +D T I + +ATGS PR + NK
Sbjct: 110 FKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPRHLPGVPFDNK- 168
Query: 1187 FYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP-FQESL 1245
+++ + P+ + VIG+ IG+E + VT++ A+P F +
Sbjct: 169 ---IILDNTGALNFTEVPK-KLAVIGAGVIGLELGSVWRRLGAEVTILE--ALPAFLAAA 222
Query: 1246 GKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGT--TIPADLVIVGIGT 1303
++V + K F +G+ + + + K A +G T+ D +IV IG
Sbjct: 223 DEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGR 282
Query: 1304 VLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPL 1347
V NT+ L + G++L+ + + V+++ TNVP VYA GD+ P+
Sbjct: 283 VPNTDGLGLEAVGLKLDERGFIPVDDHCRTNVPNVYAIGDVVRGPM 328
|
Length = 475 |
| >gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 1e-15
Identities = 69/329 (20%), Positives = 121/329 (36%), Gaps = 54/329 (16%)
Query: 93 IKADSILLRTEEFYKDND-IHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSP 151
+ I + + + + ++G+ ++D + + KK+ L D I + + +A GS
Sbjct: 54 LSESEIAIPLRALLRKSGNVQFVQGE--VTDIDRDAKKVTLADLGEISYDYLVVALGSET 111
Query: 152 RTISQADGVNK-VFYLRTVEDANNIAPHI--------TPES-----NVVVIGSSFIGMEA 197
G + F L+T+EDA + H+ E +V++G G+E
Sbjct: 112 NYFG-IPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVEL 170
Query: 198 AAFCASKVKS-------------VTVVGRGA---VPFQESLGKEVGERITKLFESKGVKF 241
A A ++ V +V G F L K + E GV+
Sbjct: 171 AGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYA----ERALEKLGVEV 226
Query: 242 VMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVV 301
++ V+ + VT D IPAD V+ G + D G+E + + +V
Sbjct: 227 LLGTPVTEVTPDG---VTLK--DGEEEIPADTVVWAAGVRASPLLKDLSGLETDRRGRLV 281
Query: 302 VNEYLE-TNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGR--IAALNMVEKKT-- 356
VN L+ P ++A GD A A H Q +Y + A L K
Sbjct: 282 VNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQAAH-QQGEYAAKNIKARLKGKPLKPFK 340
Query: 357 -----SLSTIPFFWTMLFGVGFRFAGYAA 380
+L+++ F + G + G+ A
Sbjct: 341 YKDKGTLASLGDFSAVADLGGVKLKGFLA 369
|
Length = 405 |
| >gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 1e-15
Identities = 69/329 (20%), Positives = 121/329 (36%), Gaps = 54/329 (16%)
Query: 645 IKADSILLRTEEFYKDND-IHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSP 703
+ I + + + + ++G+ ++D + + KK+ L D I + + +A GS
Sbjct: 54 LSESEIAIPLRALLRKSGNVQFVQGE--VTDIDRDAKKVTLADLGEISYDYLVVALGSET 111
Query: 704 RTISQADGVNK-VFYLRTVEDANNIAPHI--------TPES-----NVVVIGSSFIGMEA 749
G + F L+T+EDA + H+ E +V++G G+E
Sbjct: 112 NYFG-IPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVEL 170
Query: 750 AAFCASKVKS-------------VTVVGRGA---VPFQESLGKEVGERITKLFESKGVKF 793
A A ++ V +V G F L K + E GV+
Sbjct: 171 AGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYA----ERALEKLGVEV 226
Query: 794 VMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVV 853
++ V+ + VT D IPAD V+ G + D G+E + + +V
Sbjct: 227 LLGTPVTEVTPDG---VTLK--DGEEEIPADTVVWAAGVRASPLLKDLSGLETDRRGRLV 281
Query: 854 VNEYLE-TNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGR--IAALNMVEKKT-- 908
VN L+ P ++A GD A A H Q +Y + A L K
Sbjct: 282 VNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQAAH-QQGEYAAKNIKARLKGKPLKPFK 340
Query: 909 -----SLSTIPFFWTMLFGVGFRFAGYAA 932
+L+++ F + G + G+ A
Sbjct: 341 YKDKGTLASLGDFSAVADLGGVKLKGFLA 369
|
Length = 405 |
| >gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 1e-15
Identities = 69/329 (20%), Positives = 121/329 (36%), Gaps = 54/329 (16%)
Query: 1116 IKADSILLRTEEFYKDND-IHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSP 1174
+ I + + + + ++G+ ++D + + KK+ L D I + + +A GS
Sbjct: 54 LSESEIAIPLRALLRKSGNVQFVQGE--VTDIDRDAKKVTLADLGEISYDYLVVALGSET 111
Query: 1175 RTISQADGVNK-VFYLRTVEDANNIAPHI--------TPES-----NVVVIGSSFIGMEA 1220
G + F L+T+EDA + H+ E +V++G G+E
Sbjct: 112 NYFG-IPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVEL 170
Query: 1221 AAFCASKVKS-------------VTVVGRGA---VPFQESLGKEVGERITKLFESKGVKF 1264
A A ++ V +V G F L K + E GV+
Sbjct: 171 AGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYA----ERALEKLGVEV 226
Query: 1265 VMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVV 1324
++ V+ + VT D IPAD V+ G + D G+E + + +V
Sbjct: 227 LLGTPVTEVTPDG---VTLK--DGEEEIPADTVVWAAGVRASPLLKDLSGLETDRRGRLV 281
Query: 1325 VNEYLE-TNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGR--IAALNMVEKKT-- 1379
VN L+ P ++A GD A A H Q +Y + A L K
Sbjct: 282 VNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQAAH-QQGEYAAKNIKARLKGKPLKPFK 340
Query: 1380 -----SLSTIPFFWTMLFGVGFRFAGYAA 1403
+L+++ F + G + G+ A
Sbjct: 341 YKDKGTLASLGDFSAVADLGGVKLKGFLA 369
|
Length = 405 |
| >gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 1e-15
Identities = 61/197 (30%), Positives = 101/197 (51%), Gaps = 13/197 (6%)
Query: 127 EKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVV 186
+ ++ DG I +I +A GS P I A + V Y T ED + PES +V
Sbjct: 119 PRTLRTGDGEEITGDQIVIAAGSRPY-IPPAIADSGVRY-HTNEDIMRLPE--LPES-LV 173
Query: 187 VIGSSFIGME-AAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKA 245
++G +I E A F A + VT+V R + L +++ +R T++ K +
Sbjct: 174 IVGGGYIAAEFAHVFSALGTR-VTIVNRSTKLLRH-LDEDISDRFTEI-AKKKWDIRLGR 230
Query: 246 NVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGK--GVELNGQKAVVVN 303
NV++ E + D LD+G+T+ AD+++V G V N + LD + GVE++ + V+
Sbjct: 231 NVTAVE--QDGDGVTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVD 288
Query: 304 EYLETNVPGVYAGGDIA 320
EY T+ GV+A GD++
Sbjct: 289 EYGRTSARGVWALGDVS 305
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. Length = 452 |
| >gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 1e-15
Identities = 61/197 (30%), Positives = 101/197 (51%), Gaps = 13/197 (6%)
Query: 679 EKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVV 738
+ ++ DG I +I +A GS P I A + V Y T ED + PES +V
Sbjct: 119 PRTLRTGDGEEITGDQIVIAAGSRPY-IPPAIADSGVRY-HTNEDIMRLPE--LPES-LV 173
Query: 739 VIGSSFIGME-AAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKA 797
++G +I E A F A + VT+V R + L +++ +R T++ K +
Sbjct: 174 IVGGGYIAAEFAHVFSALGTR-VTIVNRSTKLLRH-LDEDISDRFTEI-AKKKWDIRLGR 230
Query: 798 NVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGK--GVELNGQKAVVVN 855
NV++ E + D LD+G+T+ AD+++V G V N + LD + GVE++ + V+
Sbjct: 231 NVTAVE--QDGDGVTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVD 288
Query: 856 EYLETNVPGVYAGGDIA 872
EY T+ GV+A GD++
Sbjct: 289 EYGRTSARGVWALGDVS 305
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. Length = 452 |
| >gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 1e-15
Identities = 61/197 (30%), Positives = 101/197 (51%), Gaps = 13/197 (6%)
Query: 1150 EKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVV 1209
+ ++ DG I +I +A GS P I A + V Y T ED + PES +V
Sbjct: 119 PRTLRTGDGEEITGDQIVIAAGSRPY-IPPAIADSGVRY-HTNEDIMRLPE--LPES-LV 173
Query: 1210 VIGSSFIGME-AAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKA 1268
++G +I E A F A + VT+V R + L +++ +R T++ K +
Sbjct: 174 IVGGGYIAAEFAHVFSALGTR-VTIVNRSTKLLRH-LDEDISDRFTEI-AKKKWDIRLGR 230
Query: 1269 NVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGK--GVELNGQKAVVVN 1326
NV++ E + D LD+G+T+ AD+++V G V N + LD + GVE++ + V+
Sbjct: 231 NVTAVE--QDGDGVTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVD 288
Query: 1327 EYLETNVPGVYAGGDIA 1343
EY T+ GV+A GD++
Sbjct: 289 EYGRTSARGVWALGDVS 305
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. Length = 452 |
| >gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 2e-15
Identities = 76/329 (23%), Positives = 130/329 (39%), Gaps = 49/329 (14%)
Query: 47 IVVGGGPSGATC-------------VETLRQNGFTGKLYFITD-ENFLPYDRVKLSKQLD 92
I++GGGP+G T + + G G+L TD EN+ +
Sbjct: 7 IIIGGGPAGLTAAIYAARAGLKVVLILEGGEPG--GQLTKTTDVENYPGFPG-------G 57
Query: 93 IKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPR 152
I ++ + +E + + +++ + + E K+K GT + + +ATG+ R
Sbjct: 58 ILGPELMEQMKEQAEKFGVEIVEDEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGAR 116
Query: 153 TISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVG 212
+ F + V +VVVIG +E A + + K VT+V
Sbjct: 117 KLGVPGEEE--FEGKGVS-YCATCDGFFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVH 173
Query: 213 RGAVPFQESLGKEVGERI--TKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGT-TI 269
R + E I +L ++ ++ + V ++ V N+ +
Sbjct: 174 RR--------DEFRAEEILVERLKKNVKIEVLTNTVVKEILGDDVEGVVLKNVKGEEKEL 225
Query: 270 PADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYN 329
P D V + IG + NT L G GV +VV+E +ET+VPG++A GD+A
Sbjct: 226 PVDGVFIAIGHLPNTELLKGLGVLDENGY-IVVDEEMETSVPGIFAAGDVADKN-----G 279
Query: 330 KNASIGHYQLAQYHGRIAALNMVEKKTSL 358
+ + A G IAAL+ SL
Sbjct: 280 RQIAT-----AAGDGAIAALSAERYLESL 303
|
Length = 305 |
| >gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 2e-15
Identities = 76/329 (23%), Positives = 130/329 (39%), Gaps = 49/329 (14%)
Query: 599 IVVGGGPSGATC-------------VETLRQNGFTGKLYFITD-ENFLPYDRVKLSKQLD 644
I++GGGP+G T + + G G+L TD EN+ +
Sbjct: 7 IIIGGGPAGLTAAIYAARAGLKVVLILEGGEPG--GQLTKTTDVENYPGFPG-------G 57
Query: 645 IKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPR 704
I ++ + +E + + +++ + + E K+K GT + + +ATG+ R
Sbjct: 58 ILGPELMEQMKEQAEKFGVEIVEDEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGAR 116
Query: 705 TISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVG 764
+ F + V +VVVIG +E A + + K VT+V
Sbjct: 117 KLGVPGEEE--FEGKGVS-YCATCDGFFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVH 173
Query: 765 RGAVPFQESLGKEVGERI--TKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGT-TI 821
R + E I +L ++ ++ + V ++ V N+ +
Sbjct: 174 RR--------DEFRAEEILVERLKKNVKIEVLTNTVVKEILGDDVEGVVLKNVKGEEKEL 225
Query: 822 PADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYN 881
P D V + IG + NT L G GV +VV+E +ET+VPG++A GD+A
Sbjct: 226 PVDGVFIAIGHLPNTELLKGLGVLDENGY-IVVDEEMETSVPGIFAAGDVADKN-----G 279
Query: 882 KNASIGHYQLAQYHGRIAALNMVEKKTSL 910
+ + A G IAAL+ SL
Sbjct: 280 RQIAT-----AAGDGAIAALSAERYLESL 303
|
Length = 305 |
| >gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 2e-15
Identities = 76/329 (23%), Positives = 130/329 (39%), Gaps = 49/329 (14%)
Query: 1070 IVVGGGPSGATC-------------VETLRQNGFTGKLYFITD-ENFLPYDRVKLSKQLD 1115
I++GGGP+G T + + G G+L TD EN+ +
Sbjct: 7 IIIGGGPAGLTAAIYAARAGLKVVLILEGGEPG--GQLTKTTDVENYPGFPG-------G 57
Query: 1116 IKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPR 1175
I ++ + +E + + +++ + + E K+K GT + + +ATG+ R
Sbjct: 58 ILGPELMEQMKEQAEKFGVEIVEDEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGAR 116
Query: 1176 TISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVG 1235
+ F + V +VVVIG +E A + + K VT+V
Sbjct: 117 KLGVPGEEE--FEGKGVS-YCATCDGFFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVH 173
Query: 1236 RGAVPFQESLGKEVGERI--TKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGT-TI 1292
R + E I +L ++ ++ + V ++ V N+ +
Sbjct: 174 RR--------DEFRAEEILVERLKKNVKIEVLTNTVVKEILGDDVEGVVLKNVKGEEKEL 225
Query: 1293 PADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYN 1352
P D V + IG + NT L G GV +VV+E +ET+VPG++A GD+A
Sbjct: 226 PVDGVFIAIGHLPNTELLKGLGVLDENGY-IVVDEEMETSVPGIFAAGDVADKN-----G 279
Query: 1353 KNASIGHYQLAQYHGRIAALNMVEKKTSL 1381
+ + A G IAAL+ SL
Sbjct: 280 RQIAT-----AAGDGAIAALSAERYLESL 303
|
Length = 305 |
| >gnl|CDD|184298 PRK13748, PRK13748, putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 2e-15
Identities = 69/260 (26%), Positives = 114/260 (43%), Gaps = 33/260 (12%)
Query: 111 IHVIKGKKIISDSELNEKKIKLQDGTS--IDFTKIYLATGSSPRTISQADGVNKVFYLRT 168
I V+ G+ D ++L DG + F + +ATG+SP + G+ + Y +
Sbjct: 204 ITVLHGEARFKDD--QTLIVRLNDGGERVVAFDRCLIATGASP-AVPPIPGLKETPYWTS 260
Query: 169 VEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGE 228
E + PE + VIGSS + +E A A VT++ R + F+E +GE
Sbjct: 261 TE---ALVSDTIPE-RLAVIGSSVVALELAQAFARLGSKVTILARSTLFFRED--PAIGE 314
Query: 229 RITKLFESKGVKFVMKANVS--SFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY 286
+T F ++G++ + S + E T + AD ++V G NT
Sbjct: 315 AVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHG-----ELRADKLLVATGRAPNTRS 369
Query: 287 L--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHG 344
L D GV +N Q A+V+++ + T+VP +YA GD P + +A G
Sbjct: 370 LALDAAGVTVNAQGAIVIDQGMRTSVPHIYAAGDCTDQPQFVY-----------VAAAAG 418
Query: 345 RIAALNMV--EKKTSLSTIP 362
AA+NM + L+ +P
Sbjct: 419 TRAAINMTGGDAALDLTAMP 438
|
Length = 561 |
| >gnl|CDD|184298 PRK13748, PRK13748, putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 2e-15
Identities = 69/260 (26%), Positives = 114/260 (43%), Gaps = 33/260 (12%)
Query: 663 IHVIKGKKIISDSELNEKKIKLQDGTS--IDFTKIYLATGSSPRTISQADGVNKVFYLRT 720
I V+ G+ D ++L DG + F + +ATG+SP + G+ + Y +
Sbjct: 204 ITVLHGEARFKDD--QTLIVRLNDGGERVVAFDRCLIATGASP-AVPPIPGLKETPYWTS 260
Query: 721 VEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGE 780
E + PE + VIGSS + +E A A VT++ R + F+E +GE
Sbjct: 261 TE---ALVSDTIPE-RLAVIGSSVVALELAQAFARLGSKVTILARSTLFFRED--PAIGE 314
Query: 781 RITKLFESKGVKFVMKANVS--SFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY 838
+T F ++G++ + S + E T + AD ++V G NT
Sbjct: 315 AVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHG-----ELRADKLLVATGRAPNTRS 369
Query: 839 L--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHG 896
L D GV +N Q A+V+++ + T+VP +YA GD P + +A G
Sbjct: 370 LALDAAGVTVNAQGAIVIDQGMRTSVPHIYAAGDCTDQPQFVY-----------VAAAAG 418
Query: 897 RIAALNMV--EKKTSLSTIP 914
AA+NM + L+ +P
Sbjct: 419 TRAAINMTGGDAALDLTAMP 438
|
Length = 561 |
| >gnl|CDD|184298 PRK13748, PRK13748, putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 2e-15
Identities = 69/260 (26%), Positives = 114/260 (43%), Gaps = 33/260 (12%)
Query: 1134 IHVIKGKKIISDSELNEKKIKLQDGTS--IDFTKIYLATGSSPRTISQADGVNKVFYLRT 1191
I V+ G+ D ++L DG + F + +ATG+SP + G+ + Y +
Sbjct: 204 ITVLHGEARFKDD--QTLIVRLNDGGERVVAFDRCLIATGASP-AVPPIPGLKETPYWTS 260
Query: 1192 VEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGE 1251
E + PE + VIGSS + +E A A VT++ R + F+E +GE
Sbjct: 261 TE---ALVSDTIPE-RLAVIGSSVVALELAQAFARLGSKVTILARSTLFFRED--PAIGE 314
Query: 1252 RITKLFESKGVKFVMKANVS--SFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY 1309
+T F ++G++ + S + E T + AD ++V G NT
Sbjct: 315 AVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHG-----ELRADKLLVATGRAPNTRS 369
Query: 1310 L--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHG 1367
L D GV +N Q A+V+++ + T+VP +YA GD P + +A G
Sbjct: 370 LALDAAGVTVNAQGAIVIDQGMRTSVPHIYAAGDCTDQPQFVY-----------VAAAAG 418
Query: 1368 RIAALNMV--EKKTSLSTIP 1385
AA+NM + L+ +P
Sbjct: 419 TRAAINMTGGDAALDLTAMP 438
|
Length = 561 |
| >gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated | Back alignment and domain information |
|---|
Score = 78.7 bits (195), Expect = 6e-15
Identities = 63/234 (26%), Positives = 105/234 (44%), Gaps = 38/234 (16%)
Query: 101 RTEEFYK----DNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPR--TI 154
R Y+ +N + +I+G D +++ +G I +ATG P I
Sbjct: 94 RLHGSYRNGLENNGVDLIEGFARFVD----AHTVEV-NGERYTADHILIATGGRPSIPDI 148
Query: 155 SQAD-GV--NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCASKVKSVTV 210
A+ G+ + F L + P+ V V+G+ +I +E A + +
Sbjct: 149 PGAEYGITSDGFFALEEL-----------PKR-VAVVGAGYIAVEFAGVLNGLGSE-THL 195
Query: 211 VGRGAVP---FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGT 267
RG P F + + + E + K KG++ A + EKN +T L++G
Sbjct: 196 FVRGDAPLRGFDPDIRETLVEEMEK----KGIRLHTNAVPKAVEKNADGSLTL-TLEDGE 250
Query: 268 TIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 319
T+ D +I IG NT+ L+ GV+LN + ++V+EY TNVPG+YA GD+
Sbjct: 251 TLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNTNVPGIYAVGDV 304
|
Length = 450 |
| >gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated | Back alignment and domain information |
|---|
Score = 78.7 bits (195), Expect = 6e-15
Identities = 63/234 (26%), Positives = 105/234 (44%), Gaps = 38/234 (16%)
Query: 653 RTEEFYK----DNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPR--TI 706
R Y+ +N + +I+G D +++ +G I +ATG P I
Sbjct: 94 RLHGSYRNGLENNGVDLIEGFARFVD----AHTVEV-NGERYTADHILIATGGRPSIPDI 148
Query: 707 SQAD-GV--NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCASKVKSVTV 762
A+ G+ + F L + P+ V V+G+ +I +E A + +
Sbjct: 149 PGAEYGITSDGFFALEEL-----------PKR-VAVVGAGYIAVEFAGVLNGLGSE-THL 195
Query: 763 VGRGAVP---FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGT 819
RG P F + + + E + K KG++ A + EKN +T L++G
Sbjct: 196 FVRGDAPLRGFDPDIRETLVEEMEK----KGIRLHTNAVPKAVEKNADGSLTL-TLEDGE 250
Query: 820 TIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 871
T+ D +I IG NT+ L+ GV+LN + ++V+EY TNVPG+YA GD+
Sbjct: 251 TLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNTNVPGIYAVGDV 304
|
Length = 450 |
| >gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated | Back alignment and domain information |
|---|
Score = 78.7 bits (195), Expect = 6e-15
Identities = 63/234 (26%), Positives = 105/234 (44%), Gaps = 38/234 (16%)
Query: 1124 RTEEFYK----DNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPR--TI 1177
R Y+ +N + +I+G D +++ +G I +ATG P I
Sbjct: 94 RLHGSYRNGLENNGVDLIEGFARFVD----AHTVEV-NGERYTADHILIATGGRPSIPDI 148
Query: 1178 SQAD-GV--NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCASKVKSVTV 1233
A+ G+ + F L + P+ V V+G+ +I +E A + +
Sbjct: 149 PGAEYGITSDGFFALEEL-----------PKR-VAVVGAGYIAVEFAGVLNGLGSE-THL 195
Query: 1234 VGRGAVP---FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGT 1290
RG P F + + + E + K KG++ A + EKN +T L++G
Sbjct: 196 FVRGDAPLRGFDPDIRETLVEEMEK----KGIRLHTNAVPKAVEKNADGSLTL-TLEDGE 250
Query: 1291 TIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 1342
T+ D +I IG NT+ L+ GV+LN + ++V+EY TNVPG+YA GD+
Sbjct: 251 TLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNTNVPGIYAVGDV 304
|
Length = 450 |
| >gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 9e-15
Identities = 76/344 (22%), Positives = 124/344 (36%), Gaps = 61/344 (17%)
Query: 9 VTIQNDDSVVVQARKDELKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFT 68
V I+ V ++ DE K + K G++ V+G GP+G L + G
Sbjct: 509 VNIRELKKVALEKGWDEYKQRWHK----PAGIGSRKKVAVIGAGPAGLAAAYFLARAGHP 564
Query: 69 GKLYFITDENFLPYDRVK-LSKQLDIKADSILLRTEEFYKDNDIHVIK--GKKIISDSEL 125
++ + VK + Q I A+ I +DI +K G K
Sbjct: 565 VTVFEREEN---AGGVVKNIIPQFRIPAELI---------QHDIEFVKAHGVKFEFGCSP 612
Query: 126 NEKKIKLQDGTSIDFTKIYLATGSS-PRTISQADGVNKVF-YLRTVEDANNIAPHITPES 183
+ +L+ + + + +A G+ + G V L +E+ N +
Sbjct: 613 DLTVEQLK---NEGYDYVVVAIGADKNGGLKLEGGNQNVIKALPFLEEYKN-----KGTA 664
Query: 184 -----NVVVIGSSFIGMEAA--AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFES 236
+VVV+G M+AA A V+ VTVV R + +E +
Sbjct: 665 LKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPAWREEY-----EEALE 719
Query: 237 KGVKFVMKANVSSFEKNEK-----------------NDVTAANLDNGTTIPADLVIVGIG 279
GV+F N SF+ + V T+ AD VI IG
Sbjct: 720 DGVEFKELLNPESFDADGTLTCRVMKLGEPDESGRRRPVETGET---VTLEADTVITAIG 776
Query: 280 TVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 323
++T L G+ L+ + VV+ ET++ VY GD+ P
Sbjct: 777 EQVDTELLKANGIPLDKKGWPVVDANGETSLTNVYMIGDVQRGP 820
|
Length = 1019 |
| >gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 9e-15
Identities = 76/344 (22%), Positives = 124/344 (36%), Gaps = 61/344 (17%)
Query: 561 VTIQNDDSVVVQARKDELKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFT 620
V I+ V ++ DE K + K G++ V+G GP+G L + G
Sbjct: 509 VNIRELKKVALEKGWDEYKQRWHK----PAGIGSRKKVAVIGAGPAGLAAAYFLARAGHP 564
Query: 621 GKLYFITDENFLPYDRVK-LSKQLDIKADSILLRTEEFYKDNDIHVIK--GKKIISDSEL 677
++ + VK + Q I A+ I +DI +K G K
Sbjct: 565 VTVFEREEN---AGGVVKNIIPQFRIPAELI---------QHDIEFVKAHGVKFEFGCSP 612
Query: 678 NEKKIKLQDGTSIDFTKIYLATGSS-PRTISQADGVNKVF-YLRTVEDANNIAPHITPES 735
+ +L+ + + + +A G+ + G V L +E+ N +
Sbjct: 613 DLTVEQLK---NEGYDYVVVAIGADKNGGLKLEGGNQNVIKALPFLEEYKN-----KGTA 664
Query: 736 -----NVVVIGSSFIGMEAA--AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFES 788
+VVV+G M+AA A V+ VTVV R + +E +
Sbjct: 665 LKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPAWREEY-----EEALE 719
Query: 789 KGVKFVMKANVSSFEKNEK-----------------NDVTAANLDNGTTIPADLVIVGIG 831
GV+F N SF+ + V T+ AD VI IG
Sbjct: 720 DGVEFKELLNPESFDADGTLTCRVMKLGEPDESGRRRPVETGET---VTLEADTVITAIG 776
Query: 832 TVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 875
++T L G+ L+ + VV+ ET++ VY GD+ P
Sbjct: 777 EQVDTELLKANGIPLDKKGWPVVDANGETSLTNVYMIGDVQRGP 820
|
Length = 1019 |
| >gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 9e-15
Identities = 76/344 (22%), Positives = 124/344 (36%), Gaps = 61/344 (17%)
Query: 1032 VTIQNDDSVVVQARKDELKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFT 1091
V I+ V ++ DE K + K G++ V+G GP+G L + G
Sbjct: 509 VNIRELKKVALEKGWDEYKQRWHK----PAGIGSRKKVAVIGAGPAGLAAAYFLARAGHP 564
Query: 1092 GKLYFITDENFLPYDRVK-LSKQLDIKADSILLRTEEFYKDNDIHVIK--GKKIISDSEL 1148
++ + VK + Q I A+ I +DI +K G K
Sbjct: 565 VTVFEREEN---AGGVVKNIIPQFRIPAELI---------QHDIEFVKAHGVKFEFGCSP 612
Query: 1149 NEKKIKLQDGTSIDFTKIYLATGSS-PRTISQADGVNKVF-YLRTVEDANNIAPHITPES 1206
+ +L+ + + + +A G+ + G V L +E+ N +
Sbjct: 613 DLTVEQLK---NEGYDYVVVAIGADKNGGLKLEGGNQNVIKALPFLEEYKN-----KGTA 664
Query: 1207 -----NVVVIGSSFIGMEAA--AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFES 1259
+VVV+G M+AA A V+ VTVV R + +E +
Sbjct: 665 LKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPAWREEY-----EEALE 719
Query: 1260 KGVKFVMKANVSSFEKNEK-----------------NDVTAANLDNGTTIPADLVIVGIG 1302
GV+F N SF+ + V T+ AD VI IG
Sbjct: 720 DGVEFKELLNPESFDADGTLTCRVMKLGEPDESGRRRPVETGET---VTLEADTVITAIG 776
Query: 1303 TVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 1346
++T L G+ L+ + VV+ ET++ VY GD+ P
Sbjct: 777 EQVDTELLKANGIPLDKKGWPVVDANGETSLTNVYMIGDVQRGP 820
|
Length = 1019 |
| >gnl|CDD|184103 PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 1e-14
Identities = 72/319 (22%), Positives = 134/319 (42%), Gaps = 32/319 (10%)
Query: 47 IVVGGGPSGATCVETLRQNGFTGKL-YFITDENF------LPYDRVKLSKQLDIKADSIL 99
IVVG GATC +R+ + F D + LPY + + ++ + ++
Sbjct: 5 IVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPY---YIGEVVEDRKYALA 61
Query: 100 LRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIY--LATGSSPRTISQA 157
E+FY I V ++I+ ++ + L T+ F + Y L S
Sbjct: 62 YTPEKFYDRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLG 121
Query: 158 DGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGA 215
+ F LR +ED + I I +V+G+ +I +E + T++ R +
Sbjct: 122 FESDITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHR-S 180
Query: 216 VPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVI 275
+ + ++ + I + + + + + + + NE VT +G D++I
Sbjct: 181 DKINKLMDADMNQPILDELDKREIPYRLNEEIDAINGNE---VT---FKSGKVEHYDMII 234
Query: 276 VGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI-----------AYAPL 324
G+GT N+ +++ ++L+ + + VN+ ETNVP +YA GDI A PL
Sbjct: 235 EGVGTHPNSKFIESSNIKLDDKGFIPVNDKFETNVPNIYAIGDIITSHYRHVDLPASVPL 294
Query: 325 HSFYNKNASIGHYQLAQYH 343
++ ASI Q+A
Sbjct: 295 AWGAHRAASIVAEQIAGND 313
|
Length = 438 |
| >gnl|CDD|184103 PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 1e-14
Identities = 72/319 (22%), Positives = 134/319 (42%), Gaps = 32/319 (10%)
Query: 599 IVVGGGPSGATCVETLRQNGFTGKL-YFITDENF------LPYDRVKLSKQLDIKADSIL 651
IVVG GATC +R+ + F D + LPY + + ++ + ++
Sbjct: 5 IVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPY---YIGEVVEDRKYALA 61
Query: 652 LRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIY--LATGSSPRTISQA 709
E+FY I V ++I+ ++ + L T+ F + Y L S
Sbjct: 62 YTPEKFYDRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLG 121
Query: 710 DGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGA 767
+ F LR +ED + I I +V+G+ +I +E + T++ R +
Sbjct: 122 FESDITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHR-S 180
Query: 768 VPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVI 827
+ + ++ + I + + + + + + + NE VT +G D++I
Sbjct: 181 DKINKLMDADMNQPILDELDKREIPYRLNEEIDAINGNE---VT---FKSGKVEHYDMII 234
Query: 828 VGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI-----------AYAPL 876
G+GT N+ +++ ++L+ + + VN+ ETNVP +YA GDI A PL
Sbjct: 235 EGVGTHPNSKFIESSNIKLDDKGFIPVNDKFETNVPNIYAIGDIITSHYRHVDLPASVPL 294
Query: 877 HSFYNKNASIGHYQLAQYH 895
++ ASI Q+A
Sbjct: 295 AWGAHRAASIVAEQIAGND 313
|
Length = 438 |
| >gnl|CDD|184103 PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 1e-14
Identities = 72/319 (22%), Positives = 134/319 (42%), Gaps = 32/319 (10%)
Query: 1070 IVVGGGPSGATCVETLRQNGFTGKL-YFITDENF------LPYDRVKLSKQLDIKADSIL 1122
IVVG GATC +R+ + F D + LPY + + ++ + ++
Sbjct: 5 IVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPY---YIGEVVEDRKYALA 61
Query: 1123 LRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIY--LATGSSPRTISQA 1180
E+FY I V ++I+ ++ + L T+ F + Y L S
Sbjct: 62 YTPEKFYDRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLG 121
Query: 1181 DGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGA 1238
+ F LR +ED + I I +V+G+ +I +E + T++ R +
Sbjct: 122 FESDITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHR-S 180
Query: 1239 VPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVI 1298
+ + ++ + I + + + + + + + NE VT +G D++I
Sbjct: 181 DKINKLMDADMNQPILDELDKREIPYRLNEEIDAINGNE---VT---FKSGKVEHYDMII 234
Query: 1299 VGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI-----------AYAPL 1347
G+GT N+ +++ ++L+ + + VN+ ETNVP +YA GDI A PL
Sbjct: 235 EGVGTHPNSKFIESSNIKLDDKGFIPVNDKFETNVPNIYAIGDIITSHYRHVDLPASVPL 294
Query: 1348 HSFYNKNASIGHYQLAQYH 1366
++ ASI Q+A
Sbjct: 295 AWGAHRAASIVAEQIAGND 313
|
Length = 438 |
| >gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 2e-14
Identities = 56/245 (22%), Positives = 103/245 (42%), Gaps = 34/245 (13%)
Query: 89 KQLDIKADSILLRTEEFYKDN----DIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIY 144
K+L D + R Y+ ++ G+ + N ++ L G + KI
Sbjct: 79 KKLLAAKDQEIARLSGLYRKGLANAGAELLDGRAELVGP--NTVEV-LASGKTYTAEKIL 135
Query: 145 LATGSSPRT-----ISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAA 199
+A G P N+ F+L T+ P+S +++ G +I +E A
Sbjct: 136 IAVGGRPPKPALPGHELGITSNEAFHLPTL-----------PKS-ILIAGGGYIAVEFAG 183
Query: 200 FCASKVKSVTVVGRGAVP---FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKN 256
T++ RG F + + + + + + +G++ + + +++S K++
Sbjct: 184 IFRGLGVQTTLIYRGKEILRGFDDDMRRGLAAALEE----RGIRILPEDSITSISKDDDG 239
Query: 257 DVTAANLDNGTTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVY 314
+ A L I AD+V+ G NTN L + GV LN A+ V+EY T+ P +Y
Sbjct: 240 RLKAT-LSKHEEIVADVVLFATGRSPNTNGLGLEAAGVRLNDLGAIAVDEYSRTSTPSIY 298
Query: 315 AGGDI 319
A GD+
Sbjct: 299 AVGDV 303
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria [Energy metabolism, Electron transport]. Length = 446 |
| >gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 2e-14
Identities = 56/245 (22%), Positives = 103/245 (42%), Gaps = 34/245 (13%)
Query: 641 KQLDIKADSILLRTEEFYKDN----DIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIY 696
K+L D + R Y+ ++ G+ + N ++ L G + KI
Sbjct: 79 KKLLAAKDQEIARLSGLYRKGLANAGAELLDGRAELVGP--NTVEV-LASGKTYTAEKIL 135
Query: 697 LATGSSPRT-----ISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAA 751
+A G P N+ F+L T+ P+S +++ G +I +E A
Sbjct: 136 IAVGGRPPKPALPGHELGITSNEAFHLPTL-----------PKS-ILIAGGGYIAVEFAG 183
Query: 752 FCASKVKSVTVVGRGAVP---FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKN 808
T++ RG F + + + + + + +G++ + + +++S K++
Sbjct: 184 IFRGLGVQTTLIYRGKEILRGFDDDMRRGLAAALEE----RGIRILPEDSITSISKDDDG 239
Query: 809 DVTAANLDNGTTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVY 866
+ A L I AD+V+ G NTN L + GV LN A+ V+EY T+ P +Y
Sbjct: 240 RLKAT-LSKHEEIVADVVLFATGRSPNTNGLGLEAAGVRLNDLGAIAVDEYSRTSTPSIY 298
Query: 867 AGGDI 871
A GD+
Sbjct: 299 AVGDV 303
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria [Energy metabolism, Electron transport]. Length = 446 |
| >gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 2e-14
Identities = 56/245 (22%), Positives = 103/245 (42%), Gaps = 34/245 (13%)
Query: 1112 KQLDIKADSILLRTEEFYKDN----DIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIY 1167
K+L D + R Y+ ++ G+ + N ++ L G + KI
Sbjct: 79 KKLLAAKDQEIARLSGLYRKGLANAGAELLDGRAELVGP--NTVEV-LASGKTYTAEKIL 135
Query: 1168 LATGSSPRT-----ISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAA 1222
+A G P N+ F+L T+ P+S +++ G +I +E A
Sbjct: 136 IAVGGRPPKPALPGHELGITSNEAFHLPTL-----------PKS-ILIAGGGYIAVEFAG 183
Query: 1223 FCASKVKSVTVVGRGAVP---FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKN 1279
T++ RG F + + + + + + +G++ + + +++S K++
Sbjct: 184 IFRGLGVQTTLIYRGKEILRGFDDDMRRGLAAALEE----RGIRILPEDSITSISKDDDG 239
Query: 1280 DVTAANLDNGTTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVY 1337
+ A L I AD+V+ G NTN L + GV LN A+ V+EY T+ P +Y
Sbjct: 240 RLKAT-LSKHEEIVADVVLFATGRSPNTNGLGLEAAGVRLNDLGAIAVDEYSRTSTPSIY 298
Query: 1338 AGGDI 1342
A GD+
Sbjct: 299 AVGDV 303
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria [Energy metabolism, Electron transport]. Length = 446 |
| >gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 3e-14
Identities = 78/313 (24%), Positives = 122/313 (38%), Gaps = 70/313 (22%)
Query: 48 VVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV-----------KLSKQLDIKAD 96
V+G GP+G T L + G+ ++ + D+ +L K
Sbjct: 145 VIGAGPAGLTAAHRLARKGYDVTIF---EA----RDKAGGLLRYGIPEFRLPK------- 190
Query: 97 SILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATG-SSPRTI- 154
I+ R E + + ++ D L+E L+ G + +++ TG PR +
Sbjct: 191 DIVDREVERLLKLGVEIRTNTEVGRDITLDE----LRAG----YDAVFIGTGAGLPRFLG 242
Query: 155 ---SQADGVNK-VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASK--VKSV 208
GV V +L V A + VVVIG M+AA A + +SV
Sbjct: 243 IPGENLGGVYSAVDFLTRVNQAVADYDLPVGK-RVVVIGGGNTAMDAAR-TAKRLGAESV 300
Query: 209 TVVGR-GAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEK--NDVTAANLDN 265
T+V R G S +EV + + +GV+F A +E V ++
Sbjct: 301 TIVYRRGREEMPAS-EEEV-----EHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMEL 354
Query: 266 G----------------TTIPADLVIVGIGTVLNTNYLDG-KGVELNGQKAVVVNE-YLE 307
G T+PADLVI IG N L G+ELN ++ ++
Sbjct: 355 GEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDETGR 414
Query: 308 TNVPGVYAGGDIA 320
T++PGV+AGGDI
Sbjct: 415 TSLPGVFAGGDIV 427
|
Length = 457 |
| >gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 3e-14
Identities = 78/313 (24%), Positives = 122/313 (38%), Gaps = 70/313 (22%)
Query: 600 VVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV-----------KLSKQLDIKAD 648
V+G GP+G T L + G+ ++ + D+ +L K
Sbjct: 145 VIGAGPAGLTAAHRLARKGYDVTIF---EA----RDKAGGLLRYGIPEFRLPK------- 190
Query: 649 SILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATG-SSPRTI- 706
I+ R E + + ++ D L+E L+ G + +++ TG PR +
Sbjct: 191 DIVDREVERLLKLGVEIRTNTEVGRDITLDE----LRAG----YDAVFIGTGAGLPRFLG 242
Query: 707 ---SQADGVNK-VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASK--VKSV 760
GV V +L V A + VVVIG M+AA A + +SV
Sbjct: 243 IPGENLGGVYSAVDFLTRVNQAVADYDLPVGK-RVVVIGGGNTAMDAAR-TAKRLGAESV 300
Query: 761 TVVGR-GAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEK--NDVTAANLDN 817
T+V R G S +EV + + +GV+F A +E V ++
Sbjct: 301 TIVYRRGREEMPAS-EEEV-----EHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMEL 354
Query: 818 G----------------TTIPADLVIVGIGTVLNTNYLDG-KGVELNGQKAVVVNE-YLE 859
G T+PADLVI IG N L G+ELN ++ ++
Sbjct: 355 GEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDETGR 414
Query: 860 TNVPGVYAGGDIA 872
T++PGV+AGGDI
Sbjct: 415 TSLPGVFAGGDIV 427
|
Length = 457 |
| >gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 3e-14
Identities = 78/313 (24%), Positives = 122/313 (38%), Gaps = 70/313 (22%)
Query: 1071 VVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV-----------KLSKQLDIKAD 1119
V+G GP+G T L + G+ ++ + D+ +L K
Sbjct: 145 VIGAGPAGLTAAHRLARKGYDVTIF---EA----RDKAGGLLRYGIPEFRLPK------- 190
Query: 1120 SILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATG-SSPRTI- 1177
I+ R E + + ++ D L+E L+ G + +++ TG PR +
Sbjct: 191 DIVDREVERLLKLGVEIRTNTEVGRDITLDE----LRAG----YDAVFIGTGAGLPRFLG 242
Query: 1178 ---SQADGVNK-VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASK--VKSV 1231
GV V +L V A + VVVIG M+AA A + +SV
Sbjct: 243 IPGENLGGVYSAVDFLTRVNQAVADYDLPVGK-RVVVIGGGNTAMDAAR-TAKRLGAESV 300
Query: 1232 TVVGR-GAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEK--NDVTAANLDN 1288
T+V R G S +EV + + +GV+F A +E V ++
Sbjct: 301 TIVYRRGREEMPAS-EEEV-----EHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMEL 354
Query: 1289 G----------------TTIPADLVIVGIGTVLNTNYLDG-KGVELNGQKAVVVNE-YLE 1330
G T+PADLVI IG N L G+ELN ++ ++
Sbjct: 355 GEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDETGR 414
Query: 1331 TNVPGVYAGGDIA 1343
T++PGV+AGGDI
Sbjct: 415 TSLPGVFAGGDIV 427
|
Length = 457 |
| >gnl|CDD|215875 pfam00355, Rieske, Rieske [2Fe-2S] domain | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 1e-13
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 506 NIYAVGTKCSHYGAPLVKGSLG--DGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTI 563
+ A+ C+H GAPL +G +G G CP+HG F+++TG + P L Y V
Sbjct: 37 EVRALSNVCTHRGAPLSRGGVGNEKGGFECPYHGWRFDLSTGKLVGGPAPRPLKTYPVLE 96
Query: 564 QND 566
+
Sbjct: 97 EVG 99
|
The rieske domain has a [2Fe-2S] centre. Two conserved cysteines that one Fe ion while the other Fe ion is coordinated by two conserved histidines. Length = 99 |
| >gnl|CDD|215875 pfam00355, Rieske, Rieske [2Fe-2S] domain | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 1e-13
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 977 NIYAVGTKCSHYGAPLVKGSLG--DGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTI 1034
+ A+ C+H GAPL +G +G G CP+HG F+++TG + P L Y V
Sbjct: 37 EVRALSNVCTHRGAPLSRGGVGNEKGGFECPYHGWRFDLSTGKLVGGPAPRPLKTYPVLE 96
Query: 1035 QND 1037
+
Sbjct: 97 EVG 99
|
The rieske domain has a [2Fe-2S] centre. Two conserved cysteines that one Fe ion while the other Fe ion is coordinated by two conserved histidines. Length = 99 |
| >gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 3e-13
Identities = 71/265 (26%), Positives = 114/265 (43%), Gaps = 45/265 (16%)
Query: 103 EEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTS--IDFTKIYLATGSSPRTISQADGV 160
Y+ N + +I+G+ D + +++ DG + KI +ATGS P D
Sbjct: 101 RGQYERNRVDLIQGRARFVDP--HTVEVECPDGEVETLTADKIVIATGSRPYRPPDVD-- 156
Query: 161 NKVFYLRTVEDANNI--APHITPESNVVVIGSSFIGME-AAAFCASKVKSVTVVGRGA-- 215
F + D+++I H P S +++ G+ IG E A+ F A VK VT++
Sbjct: 157 ---FDHPRIYDSDSILSLDH-LPRS-LIIYGAGVIGCEYASIFAALGVK-VTLINTRDRL 210
Query: 216 VPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVI 275
+ F L E+ + ++ GV V E + + +L +G I AD ++
Sbjct: 211 LSF---LDDEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIV--HLKSGKKIKADCLL 265
Query: 276 VGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNAS 333
G NT+ L + G+E + + + VNE +T VP +YA GD+
Sbjct: 266 YANGRTGNTDGLNLENAGLEADSRGQLKVNENYQTAVPHIYAVGDV-------------- 311
Query: 334 IGHYQLA-----QYHGRIAALNMVE 353
IG LA Q GRIAA + V
Sbjct: 312 IGFPSLASASMDQ--GRIAAQHAVG 334
|
Length = 461 |
| >gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 3e-13
Identities = 71/265 (26%), Positives = 114/265 (43%), Gaps = 45/265 (16%)
Query: 655 EEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTS--IDFTKIYLATGSSPRTISQADGV 712
Y+ N + +I+G+ D + +++ DG + KI +ATGS P D
Sbjct: 101 RGQYERNRVDLIQGRARFVDP--HTVEVECPDGEVETLTADKIVIATGSRPYRPPDVD-- 156
Query: 713 NKVFYLRTVEDANNI--APHITPESNVVVIGSSFIGME-AAAFCASKVKSVTVVGRGA-- 767
F + D+++I H P S +++ G+ IG E A+ F A VK VT++
Sbjct: 157 ---FDHPRIYDSDSILSLDH-LPRS-LIIYGAGVIGCEYASIFAALGVK-VTLINTRDRL 210
Query: 768 VPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVI 827
+ F L E+ + ++ GV V E + + +L +G I AD ++
Sbjct: 211 LSF---LDDEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIV--HLKSGKKIKADCLL 265
Query: 828 VGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNAS 885
G NT+ L + G+E + + + VNE +T VP +YA GD+
Sbjct: 266 YANGRTGNTDGLNLENAGLEADSRGQLKVNENYQTAVPHIYAVGDV-------------- 311
Query: 886 IGHYQLA-----QYHGRIAALNMVE 905
IG LA Q GRIAA + V
Sbjct: 312 IGFPSLASASMDQ--GRIAAQHAVG 334
|
Length = 461 |
| >gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 3e-13
Identities = 71/265 (26%), Positives = 114/265 (43%), Gaps = 45/265 (16%)
Query: 1126 EEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTS--IDFTKIYLATGSSPRTISQADGV 1183
Y+ N + +I+G+ D + +++ DG + KI +ATGS P D
Sbjct: 101 RGQYERNRVDLIQGRARFVDP--HTVEVECPDGEVETLTADKIVIATGSRPYRPPDVD-- 156
Query: 1184 NKVFYLRTVEDANNI--APHITPESNVVVIGSSFIGME-AAAFCASKVKSVTVVGRGA-- 1238
F + D+++I H P S +++ G+ IG E A+ F A VK VT++
Sbjct: 157 ---FDHPRIYDSDSILSLDH-LPRS-LIIYGAGVIGCEYASIFAALGVK-VTLINTRDRL 210
Query: 1239 VPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVI 1298
+ F L E+ + ++ GV V E + + +L +G I AD ++
Sbjct: 211 LSF---LDDEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIV--HLKSGKKIKADCLL 265
Query: 1299 VGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNAS 1356
G NT+ L + G+E + + + VNE +T VP +YA GD+
Sbjct: 266 YANGRTGNTDGLNLENAGLEADSRGQLKVNENYQTAVPHIYAVGDV-------------- 311
Query: 1357 IGHYQLA-----QYHGRIAALNMVE 1376
IG LA Q GRIAA + V
Sbjct: 312 IGFPSLASASMDQ--GRIAAQHAVG 334
|
Length = 461 |
| >gnl|CDD|236106 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 4e-13
Identities = 70/222 (31%), Positives = 107/222 (48%), Gaps = 21/222 (9%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDGT--SIDFTKIYLATGSSPRTISQADGVNKVF 164
K N I I G +D+ N ++ L DG ++ F +ATGSS R + G +
Sbjct: 103 KKNKITEIHGYGTFTDA--NTLEVDLNDGGTETVTFDNAIIATGSSTRLLP---GTSLSE 157
Query: 165 YLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVV---GRGAVPFQES 221
+ T E+ I P+S +V+ G+ IGME A + VT+V R A+P ++
Sbjct: 158 NVVTYEE--QILSRELPKS-IVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDR-ALPNED- 212
Query: 222 LGKEVGERITKLFESKGVKFVMKANVSSFEKN-EKNDVTAANLDNGT-TIPADLVIVGIG 279
EV + I K ++ GVK + V S + N K VT + D + AD V+ IG
Sbjct: 213 --AEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIG 270
Query: 280 TVLNTN-Y-LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 319
Y L+ GV L + A+ +++Y+ TNVP +YA GD+
Sbjct: 271 FAPRVEGYGLEKTGVALTDRGAIAIDDYMRTNVPHIYAIGDV 312
|
Length = 466 |
| >gnl|CDD|236106 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 4e-13
Identities = 70/222 (31%), Positives = 107/222 (48%), Gaps = 21/222 (9%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDGT--SIDFTKIYLATGSSPRTISQADGVNKVF 716
K N I I G +D+ N ++ L DG ++ F +ATGSS R + G +
Sbjct: 103 KKNKITEIHGYGTFTDA--NTLEVDLNDGGTETVTFDNAIIATGSSTRLLP---GTSLSE 157
Query: 717 YLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVV---GRGAVPFQES 773
+ T E+ I P+S +V+ G+ IGME A + VT+V R A+P ++
Sbjct: 158 NVVTYEE--QILSRELPKS-IVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDR-ALPNED- 212
Query: 774 LGKEVGERITKLFESKGVKFVMKANVSSFEKN-EKNDVTAANLDNGT-TIPADLVIVGIG 831
EV + I K ++ GVK + V S + N K VT + D + AD V+ IG
Sbjct: 213 --AEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIG 270
Query: 832 TVLNTN-Y-LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 871
Y L+ GV L + A+ +++Y+ TNVP +YA GD+
Sbjct: 271 FAPRVEGYGLEKTGVALTDRGAIAIDDYMRTNVPHIYAIGDV 312
|
Length = 466 |
| >gnl|CDD|236106 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 4e-13
Identities = 70/222 (31%), Positives = 107/222 (48%), Gaps = 21/222 (9%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDGT--SIDFTKIYLATGSSPRTISQADGVNKVF 1187
K N I I G +D+ N ++ L DG ++ F +ATGSS R + G +
Sbjct: 103 KKNKITEIHGYGTFTDA--NTLEVDLNDGGTETVTFDNAIIATGSSTRLLP---GTSLSE 157
Query: 1188 YLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVV---GRGAVPFQES 1244
+ T E+ I P+S +V+ G+ IGME A + VT+V R A+P ++
Sbjct: 158 NVVTYEE--QILSRELPKS-IVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDR-ALPNED- 212
Query: 1245 LGKEVGERITKLFESKGVKFVMKANVSSFEKN-EKNDVTAANLDNGT-TIPADLVIVGIG 1302
EV + I K ++ GVK + V S + N K VT + D + AD V+ IG
Sbjct: 213 --AEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIG 270
Query: 1303 TVLNTN-Y-LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 1342
Y L+ GV L + A+ +++Y+ TNVP +YA GD+
Sbjct: 271 FAPRVEGYGLEKTGVALTDRGAIAIDDYMRTNVPHIYAIGDV 312
|
Length = 466 |
| >gnl|CDD|179902 PRK04965, PRK04965, NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 7e-13
Identities = 68/279 (24%), Positives = 119/279 (42%), Gaps = 14/279 (5%)
Query: 47 IVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLS-----KQLDIKADSILLR 101
+++G G + V+ +R+ + IT ++ Y++ LS Q D
Sbjct: 6 VIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQR--ADDLTRQS 63
Query: 102 TEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN 161
EF + ++ + ++D + + +K Q + K+ LATG+S + G
Sbjct: 64 AGEFAEQFNL-RLFPHTWVTDIDAEAQVVKSQGNQ-WQYDKLVLATGASA-FVPPIPGRE 120
Query: 162 KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQES 221
+ L + ++ + V+V+G IG E A K+VT+V A
Sbjct: 121 LMLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASL 180
Query: 222 LGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTV 281
+ EV R+ GV ++K+ + EK + A LD+G +I D VI G
Sbjct: 181 MPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTD--SGIRATLDSGRSIEVDAVIAAAGLR 238
Query: 282 LNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA 320
NT G+ +N + +VV+ YL+T+ P +YA GD A
Sbjct: 239 PNTALARRAGLAVN--RGIVVDSYLQTSAPDIYALGDCA 275
|
Length = 377 |
| >gnl|CDD|179902 PRK04965, PRK04965, NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 7e-13
Identities = 68/279 (24%), Positives = 119/279 (42%), Gaps = 14/279 (5%)
Query: 599 IVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLS-----KQLDIKADSILLR 653
+++G G + V+ +R+ + IT ++ Y++ LS Q D
Sbjct: 6 VIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQR--ADDLTRQS 63
Query: 654 TEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN 713
EF + ++ + ++D + + +K Q + K+ LATG+S + G
Sbjct: 64 AGEFAEQFNL-RLFPHTWVTDIDAEAQVVKSQGNQ-WQYDKLVLATGASA-FVPPIPGRE 120
Query: 714 KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQES 773
+ L + ++ + V+V+G IG E A K+VT+V A
Sbjct: 121 LMLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASL 180
Query: 774 LGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTV 833
+ EV R+ GV ++K+ + EK + A LD+G +I D VI G
Sbjct: 181 MPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTD--SGIRATLDSGRSIEVDAVIAAAGLR 238
Query: 834 LNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA 872
NT G+ +N + +VV+ YL+T+ P +YA GD A
Sbjct: 239 PNTALARRAGLAVN--RGIVVDSYLQTSAPDIYALGDCA 275
|
Length = 377 |
| >gnl|CDD|179902 PRK04965, PRK04965, NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 7e-13
Identities = 68/279 (24%), Positives = 119/279 (42%), Gaps = 14/279 (5%)
Query: 1070 IVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLS-----KQLDIKADSILLR 1124
+++G G + V+ +R+ + IT ++ Y++ LS Q D
Sbjct: 6 VIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQR--ADDLTRQS 63
Query: 1125 TEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN 1184
EF + ++ + ++D + + +K Q + K+ LATG+S + G
Sbjct: 64 AGEFAEQFNL-RLFPHTWVTDIDAEAQVVKSQGNQ-WQYDKLVLATGASA-FVPPIPGRE 120
Query: 1185 KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQES 1244
+ L + ++ + V+V+G IG E A K+VT+V A
Sbjct: 121 LMLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASL 180
Query: 1245 LGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTV 1304
+ EV R+ GV ++K+ + EK + A LD+G +I D VI G
Sbjct: 181 MPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTD--SGIRATLDSGRSIEVDAVIAAAGLR 238
Query: 1305 LNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA 1343
NT G+ +N + +VV+ YL+T+ P +YA GD A
Sbjct: 239 PNTALARRAGLAVN--RGIVVDSYLQTSAPDIYALGDCA 275
|
Length = 377 |
| >gnl|CDD|237790 PRK14694, PRK14694, putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Score = 72.3 bits (177), Expect = 7e-13
Identities = 82/337 (24%), Positives = 140/337 (41%), Gaps = 44/337 (13%)
Query: 83 DRVKLSKQLDIKADSIL-LRTEEFYKDN-DIHVIKGKKIISDSELNEKKIKLQDG--TSI 138
DR L Q + + + + + ++N I V+ G+ D + L DG ++
Sbjct: 82 DRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDE--RTLTVTLNDGGEQTV 139
Query: 139 DFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA 198
F + ++ TG+ P G+ + YL + + + PE ++VIG+S + +E A
Sbjct: 140 HFDRAFIGTGARPAE-PPVPGLAETPYLTS---TSALELDHIPER-LLVIGASVVALELA 194
Query: 199 AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDV 258
A VTV+ R V QE VGE I F +G++ + + S + N + +
Sbjct: 195 QAFARLGSRVTVLARSRVLSQED--PAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFI 252
Query: 259 TAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQK-AVVVNEYLETNVPGVYAGG 317
N T+ A+ ++V G NT L+ + + + ++ A+ ++E+L+T V G+YA G
Sbjct: 253 LETN---AGTLRAEQLLVATGRTPNTENLNLESIGVETERGAIRIDEHLQTTVSGIYAAG 309
Query: 318 DIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMV--EKKTSLSTIPFFWTMLFGVGFRF 375
D P + +A G AA+NM + LS +P V F
Sbjct: 310 DCTDQPQFVY-----------VAAAGGSRAAINMTGGDASLDLSAMP-------EVIFT- 350
Query: 376 AGYAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTV 412
QV VG EA Y + L + V
Sbjct: 351 ------DPQVATVGLSEAEAQAQGYDTDSRTLDLENV 381
|
Length = 468 |
| >gnl|CDD|237790 PRK14694, PRK14694, putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Score = 72.3 bits (177), Expect = 7e-13
Identities = 82/337 (24%), Positives = 140/337 (41%), Gaps = 44/337 (13%)
Query: 635 DRVKLSKQLDIKADSIL-LRTEEFYKDN-DIHVIKGKKIISDSELNEKKIKLQDG--TSI 690
DR L Q + + + + + ++N I V+ G+ D + L DG ++
Sbjct: 82 DRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDE--RTLTVTLNDGGEQTV 139
Query: 691 DFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA 750
F + ++ TG+ P G+ + YL + + + PE ++VIG+S + +E A
Sbjct: 140 HFDRAFIGTGARPAE-PPVPGLAETPYLTS---TSALELDHIPER-LLVIGASVVALELA 194
Query: 751 AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDV 810
A VTV+ R V QE VGE I F +G++ + + S + N + +
Sbjct: 195 QAFARLGSRVTVLARSRVLSQED--PAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFI 252
Query: 811 TAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQK-AVVVNEYLETNVPGVYAGG 869
N T+ A+ ++V G NT L+ + + + ++ A+ ++E+L+T V G+YA G
Sbjct: 253 LETN---AGTLRAEQLLVATGRTPNTENLNLESIGVETERGAIRIDEHLQTTVSGIYAAG 309
Query: 870 DIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMV--EKKTSLSTIPFFWTMLFGVGFRF 927
D P + +A G AA+NM + LS +P V F
Sbjct: 310 DCTDQPQFVY-----------VAAAGGSRAAINMTGGDASLDLSAMP-------EVIFT- 350
Query: 928 AGYAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTV 964
QV VG EA Y + L + V
Sbjct: 351 ------DPQVATVGLSEAEAQAQGYDTDSRTLDLENV 381
|
Length = 468 |
| >gnl|CDD|237790 PRK14694, PRK14694, putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Score = 72.3 bits (177), Expect = 7e-13
Identities = 82/337 (24%), Positives = 140/337 (41%), Gaps = 44/337 (13%)
Query: 1106 DRVKLSKQLDIKADSIL-LRTEEFYKDN-DIHVIKGKKIISDSELNEKKIKLQDG--TSI 1161
DR L Q + + + + + ++N I V+ G+ D + L DG ++
Sbjct: 82 DRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDE--RTLTVTLNDGGEQTV 139
Query: 1162 DFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA 1221
F + ++ TG+ P G+ + YL + + + PE ++VIG+S + +E A
Sbjct: 140 HFDRAFIGTGARPAE-PPVPGLAETPYLTS---TSALELDHIPER-LLVIGASVVALELA 194
Query: 1222 AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDV 1281
A VTV+ R V QE VGE I F +G++ + + S + N + +
Sbjct: 195 QAFARLGSRVTVLARSRVLSQED--PAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFI 252
Query: 1282 TAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQK-AVVVNEYLETNVPGVYAGG 1340
N T+ A+ ++V G NT L+ + + + ++ A+ ++E+L+T V G+YA G
Sbjct: 253 LETN---AGTLRAEQLLVATGRTPNTENLNLESIGVETERGAIRIDEHLQTTVSGIYAAG 309
Query: 1341 DIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMV--EKKTSLSTIPFFWTMLFGVGFRF 1398
D P + +A G AA+NM + LS +P V F
Sbjct: 310 DCTDQPQFVY-----------VAAAGGSRAAINMTGGDASLDLSAMP-------EVIFT- 350
Query: 1399 AGYAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTV 1435
QV VG EA Y + L + V
Sbjct: 351 ------DPQVATVGLSEAEAQAQGYDTDSRTLDLENV 381
|
Length = 468 |
| >gnl|CDD|184951 PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 2e-12
Identities = 73/287 (25%), Positives = 123/287 (42%), Gaps = 13/287 (4%)
Query: 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFIT---DENFLPYDRVKLSKQLDI-KADS 97
+K ++G G G +E L + IT +E + YDRV LS A+
Sbjct: 2 SKVRLAIIGNGMVGHRFIEDLLDKADAAN-FDITVFCEEPRIAYDRVHLSSYFSHHTAEE 60
Query: 98 ILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSP--RTIS 155
+ L E FY+ + I V+ G++ I+ + EK I G ++ + K+ +ATGS P I
Sbjct: 61 LSLVREGFYEKHGIKVLVGERAITINR-QEKVIHSSAGRTVFYDKLIMATGSYPWIPPIK 119
Query: 156 QADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVT--VVGR 213
++ F RT+ED N I V+G +G+EAA A K V V+
Sbjct: 120 GSET-QDCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAG--ALKNLGVETHVIEF 176
Query: 214 GAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADL 273
+ E L + GE++ + ES GV+ N + +G+ + D
Sbjct: 177 APMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDF 236
Query: 274 VIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA 320
++ G G+ + + +V+N+ +T+ P +YA G+ A
Sbjct: 237 IVFSTGIRPQDKLATQCGLAVAPRGGIVINDSCQTSDPDIYAIGECA 283
|
Length = 847 |
| >gnl|CDD|184951 PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 2e-12
Identities = 73/287 (25%), Positives = 123/287 (42%), Gaps = 13/287 (4%)
Query: 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFIT---DENFLPYDRVKLSKQLDI-KADS 649
+K ++G G G +E L + IT +E + YDRV LS A+
Sbjct: 2 SKVRLAIIGNGMVGHRFIEDLLDKADAAN-FDITVFCEEPRIAYDRVHLSSYFSHHTAEE 60
Query: 650 ILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSP--RTIS 707
+ L E FY+ + I V+ G++ I+ + EK I G ++ + K+ +ATGS P I
Sbjct: 61 LSLVREGFYEKHGIKVLVGERAITINR-QEKVIHSSAGRTVFYDKLIMATGSYPWIPPIK 119
Query: 708 QADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVT--VVGR 765
++ F RT+ED N I V+G +G+EAA A K V V+
Sbjct: 120 GSET-QDCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAG--ALKNLGVETHVIEF 176
Query: 766 GAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADL 825
+ E L + GE++ + ES GV+ N + +G+ + D
Sbjct: 177 APMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDF 236
Query: 826 VIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA 872
++ G G+ + + +V+N+ +T+ P +YA G+ A
Sbjct: 237 IVFSTGIRPQDKLATQCGLAVAPRGGIVINDSCQTSDPDIYAIGECA 283
|
Length = 847 |
| >gnl|CDD|184951 PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 2e-12
Identities = 73/287 (25%), Positives = 123/287 (42%), Gaps = 13/287 (4%)
Query: 1065 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFIT---DENFLPYDRVKLSKQLDI-KADS 1120
+K ++G G G +E L + IT +E + YDRV LS A+
Sbjct: 2 SKVRLAIIGNGMVGHRFIEDLLDKADAAN-FDITVFCEEPRIAYDRVHLSSYFSHHTAEE 60
Query: 1121 ILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSP--RTIS 1178
+ L E FY+ + I V+ G++ I+ + EK I G ++ + K+ +ATGS P I
Sbjct: 61 LSLVREGFYEKHGIKVLVGERAITINR-QEKVIHSSAGRTVFYDKLIMATGSYPWIPPIK 119
Query: 1179 QADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVT--VVGR 1236
++ F RT+ED N I V+G +G+EAA A K V V+
Sbjct: 120 GSET-QDCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAG--ALKNLGVETHVIEF 176
Query: 1237 GAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADL 1296
+ E L + GE++ + ES GV+ N + +G+ + D
Sbjct: 177 APMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDF 236
Query: 1297 VIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA 1343
++ G G+ + + +V+N+ +T+ P +YA G+ A
Sbjct: 237 IVFSTGIRPQDKLATQCGLAVAPRGGIVINDSCQTSDPDIYAIGECA 283
|
Length = 847 |
| >gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 4e-12
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 184 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVM 243
VVV+G +IG+E A+ A VTVV R +E+ + + + E G++ ++
Sbjct: 1 RVVVVGGGYIGLEFASALAKLGSKVTVVERRDRLL-RGFDEEIAKILQEKLEKNGIEVLL 59
Query: 244 KANVSSFEKNEKNDVTAANLDNG 266
V E N V +G
Sbjct: 60 NTTVEEIEGNGDGVVVKLKTGDG 82
|
This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 82 |
| >gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 4e-12
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 736 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVM 795
VVV+G +IG+E A+ A VTVV R +E+ + + + E G++ ++
Sbjct: 1 RVVVVGGGYIGLEFASALAKLGSKVTVVERRDRLL-RGFDEEIAKILQEKLEKNGIEVLL 59
Query: 796 KANVSSFEKNEKNDVTAANLDNG 818
V E N V +G
Sbjct: 60 NTTVEEIEGNGDGVVVKLKTGDG 82
|
This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 82 |
| >gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 4e-12
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 1207 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVM 1266
VVV+G +IG+E A+ A VTVV R +E+ + + + E G++ ++
Sbjct: 1 RVVVVGGGYIGLEFASALAKLGSKVTVVERRDRLL-RGFDEEIAKILQEKLEKNGIEVLL 59
Query: 1267 KANVSSFEKNEKNDVTAANLDNG 1289
V E N V +G
Sbjct: 60 NTTVEEIEGNGDGVVVKLKTGDG 82
|
This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 82 |
| >gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 7e-12
Identities = 81/366 (22%), Positives = 130/366 (35%), Gaps = 48/366 (13%)
Query: 40 SGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK-LSKQLDIKADSI 98
+ V+G GP+G + L + G F E P VK + + I A+SI
Sbjct: 534 KSSAHKVAVIGAGPAGLSAGYFLARAGH-PVTVFEKKEK--PGGVVKNIIPEFRISAESI 590
Query: 99 LLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGS-SPRTISQA 157
+ E K + + G +L ++K Q + + LA G+ +
Sbjct: 591 Q-KDIELVKFHGVEFKYG----CSPDLTVAELKNQG-----YKYVILAIGAWKHGPLRLE 640
Query: 158 DGVNKVF-YLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA--AFCASKVKSVTVVGRG 214
G +V L + +VVV+G M+AA A V+ VTVV R
Sbjct: 641 GGGERVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRR 700
Query: 215 AVPFQESLGKEVGERITKLFESKGVKFVMKANVSSF-------------EKNEKNDVTAA 261
+ + +E+ E + GV F + SF E +
Sbjct: 701 TKRYMPASREELEEALED-----GVDFKELLSPESFEDGTLTCEVMKLGEPDASGRRRPV 755
Query: 262 NLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVN-EYLETNVPGVYAGGDIA 320
+PAD VI +G ++T+ L G+ L+ VVN ETN+ V+ GD
Sbjct: 756 GTGETVDLPADTVIAAVGEQVDTDLLQKNGIPLDEYGWPVVNQATGETNITNVFVIGDAN 815
Query: 321 YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRFAGYAA 380
P A+I A GR AA ++ ++ S + + + V
Sbjct: 816 RGP--------ATIVE---AIADGRKAANAILSREGLNSDVDKVFPINEEVRLAEVYQKK 864
Query: 381 GHTQVD 386
G +D
Sbjct: 865 GILVID 870
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. Length = 1012 |
| >gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 7e-12
Identities = 81/366 (22%), Positives = 130/366 (35%), Gaps = 48/366 (13%)
Query: 592 SGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK-LSKQLDIKADSI 650
+ V+G GP+G + L + G F E P VK + + I A+SI
Sbjct: 534 KSSAHKVAVIGAGPAGLSAGYFLARAGH-PVTVFEKKEK--PGGVVKNIIPEFRISAESI 590
Query: 651 LLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGS-SPRTISQA 709
+ E K + + G +L ++K Q + + LA G+ +
Sbjct: 591 Q-KDIELVKFHGVEFKYG----CSPDLTVAELKNQG-----YKYVILAIGAWKHGPLRLE 640
Query: 710 DGVNKVF-YLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA--AFCASKVKSVTVVGRG 766
G +V L + +VVV+G M+AA A V+ VTVV R
Sbjct: 641 GGGERVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRR 700
Query: 767 AVPFQESLGKEVGERITKLFESKGVKFVMKANVSSF-------------EKNEKNDVTAA 813
+ + +E+ E + GV F + SF E +
Sbjct: 701 TKRYMPASREELEEALED-----GVDFKELLSPESFEDGTLTCEVMKLGEPDASGRRRPV 755
Query: 814 NLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVN-EYLETNVPGVYAGGDIA 872
+PAD VI +G ++T+ L G+ L+ VVN ETN+ V+ GD
Sbjct: 756 GTGETVDLPADTVIAAVGEQVDTDLLQKNGIPLDEYGWPVVNQATGETNITNVFVIGDAN 815
Query: 873 YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRFAGYAA 932
P A+I A GR AA ++ ++ S + + + V
Sbjct: 816 RGP--------ATIVE---AIADGRKAANAILSREGLNSDVDKVFPINEEVRLAEVYQKK 864
Query: 933 GHTQVD 938
G +D
Sbjct: 865 GILVID 870
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. Length = 1012 |
| >gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 7e-12
Identities = 81/366 (22%), Positives = 130/366 (35%), Gaps = 48/366 (13%)
Query: 1063 SGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK-LSKQLDIKADSI 1121
+ V+G GP+G + L + G F E P VK + + I A+SI
Sbjct: 534 KSSAHKVAVIGAGPAGLSAGYFLARAGH-PVTVFEKKEK--PGGVVKNIIPEFRISAESI 590
Query: 1122 LLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGS-SPRTISQA 1180
+ E K + + G +L ++K Q + + LA G+ +
Sbjct: 591 Q-KDIELVKFHGVEFKYG----CSPDLTVAELKNQG-----YKYVILAIGAWKHGPLRLE 640
Query: 1181 DGVNKVF-YLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA--AFCASKVKSVTVVGRG 1237
G +V L + +VVV+G M+AA A V+ VTVV R
Sbjct: 641 GGGERVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRR 700
Query: 1238 AVPFQESLGKEVGERITKLFESKGVKFVMKANVSSF-------------EKNEKNDVTAA 1284
+ + +E+ E + GV F + SF E +
Sbjct: 701 TKRYMPASREELEEALED-----GVDFKELLSPESFEDGTLTCEVMKLGEPDASGRRRPV 755
Query: 1285 NLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVN-EYLETNVPGVYAGGDIA 1343
+PAD VI +G ++T+ L G+ L+ VVN ETN+ V+ GD
Sbjct: 756 GTGETVDLPADTVIAAVGEQVDTDLLQKNGIPLDEYGWPVVNQATGETNITNVFVIGDAN 815
Query: 1344 YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRFAGYAA 1403
P A+I A GR AA ++ ++ S + + + V
Sbjct: 816 RGP--------ATIVE---AIADGRKAANAILSREGLNSDVDKVFPINEEVRLAEVYQKK 864
Query: 1404 GHTQVD 1409
G +D
Sbjct: 865 GILVID 870
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. Length = 1012 |
| >gnl|CDD|239604 cd03528, Rieske_RO_ferredoxin, Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO) | Back alignment and domain information |
|---|
Score = 62.5 bits (153), Expect = 8e-12
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 956 DKVLAILTVGMDPLAAQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIAT 1015
+ + VG P+A + YA C+H A L +G + G + CP HG F++ T
Sbjct: 13 GEPKRV-DVGGRPIAVYRVDGEFYATDDLCTHGDASLSEGYVEGGVIECPLHGGRFDLRT 71
Query: 1016 GDIEDFPGMDSLPCYKVTIQNDD 1038
G P + L Y V +++ D
Sbjct: 72 GKALSLPATEPLKTYPVKVEDGD 94
|
The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the insertions that give other Rieske proteins unique structural features are missing. CARDO catalyzes dihydroxylation at the C1 and C9a positions of carbazole. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes. Length = 98 |
| >gnl|CDD|225057 COG2146, {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 8e-12
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 974 AERNIYAVGTKCSHYGAPLVKGSL-GDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKV 1032
A+ ++A+ +C H GAPL +G + GD V CP HGA F++ TG+ + P +L Y V
Sbjct: 35 ADGEVFAIDNRCPHAGAPLSRGLVEGDETVVCPLHGARFDLRTGECLEPPAGKTLKTYPV 94
Query: 1033 TIQNDDSVVVQ 1043
+ V V
Sbjct: 95 RV-EGGRVFVD 104
|
Length = 106 |
| >gnl|CDD|239604 cd03528, Rieske_RO_ferredoxin, Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO) | Back alignment and domain information |
|---|
Score = 61.7 bits (151), Expect = 2e-11
Identities = 20/62 (32%), Positives = 30/62 (48%)
Query: 506 NIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQN 565
YA C+H A L +G + G + CP HG F++ TG P + L Y V +++
Sbjct: 33 EFYATDDLCTHGDASLSEGYVEGGVIECPLHGGRFDLRTGKALSLPATEPLKTYPVKVED 92
Query: 566 DD 567
D
Sbjct: 93 GD 94
|
The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the insertions that give other Rieske proteins unique structural features are missing. CARDO catalyzes dihydroxylation at the C1 and C9a positions of carbazole. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes. Length = 98 |
| >gnl|CDD|225057 COG2146, {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 2e-11
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 507 IYAVGTKCSHYGAPLVKGSL-GDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQN 565
++A+ +C H GAPL +G + GD V CP HGA F++ TG+ + P +L Y V +
Sbjct: 39 VFAIDNRCPHAGAPLSRGLVEGDETVVCPLHGARFDLRTGECLEPPAGKTLKTYPVRV-E 97
Query: 566 DDSVVVQ 572
V V
Sbjct: 98 GGRVFVD 104
|
Length = 106 |
| >gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 2e-11
Identities = 51/198 (25%), Positives = 85/198 (42%), Gaps = 47/198 (23%)
Query: 145 LATGSSPRTIS--QADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFC 201
+ATGS P + DG Y+ + ++A ++ P+S +V++G IG+E A+
Sbjct: 148 IATGSRPVELPGLPFDGE----YVISSDEA--LSLETLPKS-LVIVGGGVIGLEWASMLA 200
Query: 202 ASKVKSVTVVGRGAVPFQESLGKEVGERI------------TKLFESKGVKFVMKANVSS 249
V+ VTVV E +RI +L + GV+ V A V
Sbjct: 201 DFGVE-VTVV-------------EAADRILPTEDAELSKEVARLLKKLGVRVVTGAKVLG 246
Query: 250 FEKNEKNDVTAANLDNG--TTIPADLVIVGIGTVLNTNYLDGKGVE-----LNGQKAVVV 302
+ V NG T+ AD V+V +G NT +G G+E + G + +
Sbjct: 247 LTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNT---EGIGLENTDIDVEG-GFIQI 302
Query: 303 NEYLETNVPGVYAGGDIA 320
+++ +T +YA GD+
Sbjct: 303 DDFCQTKERHIYAIGDVI 320
|
Length = 472 |
| >gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 2e-11
Identities = 51/198 (25%), Positives = 85/198 (42%), Gaps = 47/198 (23%)
Query: 697 LATGSSPRTIS--QADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFC 753
+ATGS P + DG Y+ + ++A ++ P+S +V++G IG+E A+
Sbjct: 148 IATGSRPVELPGLPFDGE----YVISSDEA--LSLETLPKS-LVIVGGGVIGLEWASMLA 200
Query: 754 ASKVKSVTVVGRGAVPFQESLGKEVGERI------------TKLFESKGVKFVMKANVSS 801
V+ VTVV E +RI +L + GV+ V A V
Sbjct: 201 DFGVE-VTVV-------------EAADRILPTEDAELSKEVARLLKKLGVRVVTGAKVLG 246
Query: 802 FEKNEKNDVTAANLDNG--TTIPADLVIVGIGTVLNTNYLDGKGVE-----LNGQKAVVV 854
+ V NG T+ AD V+V +G NT +G G+E + G + +
Sbjct: 247 LTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNT---EGIGLENTDIDVEG-GFIQI 302
Query: 855 NEYLETNVPGVYAGGDIA 872
+++ +T +YA GD+
Sbjct: 303 DDFCQTKERHIYAIGDVI 320
|
Length = 472 |
| >gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 2e-11
Identities = 51/198 (25%), Positives = 85/198 (42%), Gaps = 47/198 (23%)
Query: 1168 LATGSSPRTIS--QADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFC 1224
+ATGS P + DG Y+ + ++A ++ P+S +V++G IG+E A+
Sbjct: 148 IATGSRPVELPGLPFDGE----YVISSDEA--LSLETLPKS-LVIVGGGVIGLEWASMLA 200
Query: 1225 ASKVKSVTVVGRGAVPFQESLGKEVGERI------------TKLFESKGVKFVMKANVSS 1272
V+ VTVV E +RI +L + GV+ V A V
Sbjct: 201 DFGVE-VTVV-------------EAADRILPTEDAELSKEVARLLKKLGVRVVTGAKVLG 246
Query: 1273 FEKNEKNDVTAANLDNG--TTIPADLVIVGIGTVLNTNYLDGKGVE-----LNGQKAVVV 1325
+ V NG T+ AD V+V +G NT +G G+E + G + +
Sbjct: 247 LTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNT---EGIGLENTDIDVEG-GFIQI 302
Query: 1326 NEYLETNVPGVYAGGDIA 1343
+++ +T +YA GD+
Sbjct: 303 DDFCQTKERHIYAIGDVI 320
|
Length = 472 |
| >gnl|CDD|200098 TIGR01423, trypano_reduc, trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Score = 66.5 bits (162), Expect = 5e-11
Identities = 55/192 (28%), Positives = 83/192 (43%), Gaps = 24/192 (12%)
Query: 138 IDFTKIYLATGSSPRT-----ISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSF 192
+ I LATGS P+ I N+ FYL P V+ +G F
Sbjct: 150 LQAEHILLATGSWPQMLGIPGIEHCISSNEAFYLDE------------PPRRVLTVGGGF 197
Query: 193 IGME-AAAFCASKVK--SVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSS 249
I +E A F A K + VT+ R + + +TK + G+ + N +
Sbjct: 198 ISVEFAGIFNAYKPRGGKVTLCYRNN-MILRGFDSTLRKELTKQLRANGINIMTNENPAK 256
Query: 250 FEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLE 307
N + ++G T+ D+V++ IG V T L D GVEL + A+ V+E+
Sbjct: 257 VTLN-ADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFSR 315
Query: 308 TNVPGVYAGGDI 319
TNVP +YA GD+
Sbjct: 316 TNVPNIYAIGDV 327
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. Length = 486 |
| >gnl|CDD|200098 TIGR01423, trypano_reduc, trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Score = 66.5 bits (162), Expect = 5e-11
Identities = 55/192 (28%), Positives = 83/192 (43%), Gaps = 24/192 (12%)
Query: 690 IDFTKIYLATGSSPRT-----ISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSF 744
+ I LATGS P+ I N+ FYL P V+ +G F
Sbjct: 150 LQAEHILLATGSWPQMLGIPGIEHCISSNEAFYLDE------------PPRRVLTVGGGF 197
Query: 745 IGME-AAAFCASKVK--SVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSS 801
I +E A F A K + VT+ R + + +TK + G+ + N +
Sbjct: 198 ISVEFAGIFNAYKPRGGKVTLCYRNN-MILRGFDSTLRKELTKQLRANGINIMTNENPAK 256
Query: 802 FEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLE 859
N + ++G T+ D+V++ IG V T L D GVEL + A+ V+E+
Sbjct: 257 VTLN-ADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFSR 315
Query: 860 TNVPGVYAGGDI 871
TNVP +YA GD+
Sbjct: 316 TNVPNIYAIGDV 327
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. Length = 486 |
| >gnl|CDD|200098 TIGR01423, trypano_reduc, trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Score = 66.5 bits (162), Expect = 5e-11
Identities = 55/192 (28%), Positives = 83/192 (43%), Gaps = 24/192 (12%)
Query: 1161 IDFTKIYLATGSSPRT-----ISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSF 1215
+ I LATGS P+ I N+ FYL P V+ +G F
Sbjct: 150 LQAEHILLATGSWPQMLGIPGIEHCISSNEAFYLDE------------PPRRVLTVGGGF 197
Query: 1216 IGME-AAAFCASKVK--SVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSS 1272
I +E A F A K + VT+ R + + +TK + G+ + N +
Sbjct: 198 ISVEFAGIFNAYKPRGGKVTLCYRNN-MILRGFDSTLRKELTKQLRANGINIMTNENPAK 256
Query: 1273 FEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLE 1330
N + ++G T+ D+V++ IG V T L D GVEL + A+ V+E+
Sbjct: 257 VTLN-ADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFSR 315
Query: 1331 TNVPGVYAGGDI 1342
TNVP +YA GD+
Sbjct: 316 TNVPNIYAIGDV 327
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. Length = 486 |
| >gnl|CDD|226160 COG3634, AhpF, Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 2e-10
Identities = 89/332 (26%), Positives = 135/332 (40%), Gaps = 73/332 (21%)
Query: 35 MAKLSSG----------NKDTF--IVVGGGPSGATC-VETLRQNGFTG---------KLY 72
+AK+ +G KD + +VVGGGP+GA + R+ TG L
Sbjct: 191 LAKIDTGAAKRDAEEFNAKDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLD 250
Query: 73 FITDENFL--PY-DRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKK 129
+ ENF+ P + KL+ L E K D+ V+ ++ +
Sbjct: 251 TMGIENFISVPETEGPKLAAAL-----------EAHVKQYDVDVMNLQRASKLEPAAVEG 299
Query: 130 ----IKLQDGTSIDFTKIYLATGSSPRTIS---QADGVNK-VFYLRTVEDANNIAPH--- 178
++L +G + + LATG+ R ++ + + NK V Y PH
Sbjct: 300 GLIEVELANGAVLKARTVILATGARWRNMNVPGEDEYRNKGVAY----------CPHCDG 349
Query: 179 -ITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESL-GKEVGERITKLFES 236
+ V VIG G+EAA A V+ VT++ F L V + KL
Sbjct: 350 PLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLL-----EFAPELKADAVLQD--KLRSL 402
Query: 237 KGVKFVMKANVSSFEKNEKNDVTAANL---DNGTTIPADL--VIVGIGTVLNTNYLDGKG 291
V + A + K + + VT +G +L V V IG + NT +L G
Sbjct: 403 PNVTIITNAQTTEV-KGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGA- 460
Query: 292 VELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 323
VELN + ++V+ ETNVPGV+A GD P
Sbjct: 461 VELNRRGEIIVDARGETNVPGVFAAGDCTTVP 492
|
Length = 520 |
| >gnl|CDD|226160 COG3634, AhpF, Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 2e-10
Identities = 89/332 (26%), Positives = 135/332 (40%), Gaps = 73/332 (21%)
Query: 587 MAKLSSG----------NKDTF--IVVGGGPSGATC-VETLRQNGFTG---------KLY 624
+AK+ +G KD + +VVGGGP+GA + R+ TG L
Sbjct: 191 LAKIDTGAAKRDAEEFNAKDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLD 250
Query: 625 FITDENFL--PY-DRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKK 681
+ ENF+ P + KL+ L E K D+ V+ ++ +
Sbjct: 251 TMGIENFISVPETEGPKLAAAL-----------EAHVKQYDVDVMNLQRASKLEPAAVEG 299
Query: 682 ----IKLQDGTSIDFTKIYLATGSSPRTIS---QADGVNK-VFYLRTVEDANNIAPH--- 730
++L +G + + LATG+ R ++ + + NK V Y PH
Sbjct: 300 GLIEVELANGAVLKARTVILATGARWRNMNVPGEDEYRNKGVAY----------CPHCDG 349
Query: 731 -ITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESL-GKEVGERITKLFES 788
+ V VIG G+EAA A V+ VT++ F L V + KL
Sbjct: 350 PLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLL-----EFAPELKADAVLQD--KLRSL 402
Query: 789 KGVKFVMKANVSSFEKNEKNDVTAANL---DNGTTIPADL--VIVGIGTVLNTNYLDGKG 843
V + A + K + + VT +G +L V V IG + NT +L G
Sbjct: 403 PNVTIITNAQTTEV-KGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGA- 460
Query: 844 VELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 875
VELN + ++V+ ETNVPGV+A GD P
Sbjct: 461 VELNRRGEIIVDARGETNVPGVFAAGDCTTVP 492
|
Length = 520 |
| >gnl|CDD|226160 COG3634, AhpF, Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 2e-10
Identities = 89/332 (26%), Positives = 135/332 (40%), Gaps = 73/332 (21%)
Query: 1058 MAKLSSG----------NKDTF--IVVGGGPSGATC-VETLRQNGFTG---------KLY 1095
+AK+ +G KD + +VVGGGP+GA + R+ TG L
Sbjct: 191 LAKIDTGAAKRDAEEFNAKDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLD 250
Query: 1096 FITDENFL--PY-DRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKK 1152
+ ENF+ P + KL+ L E K D+ V+ ++ +
Sbjct: 251 TMGIENFISVPETEGPKLAAAL-----------EAHVKQYDVDVMNLQRASKLEPAAVEG 299
Query: 1153 ----IKLQDGTSIDFTKIYLATGSSPRTIS---QADGVNK-VFYLRTVEDANNIAPH--- 1201
++L +G + + LATG+ R ++ + + NK V Y PH
Sbjct: 300 GLIEVELANGAVLKARTVILATGARWRNMNVPGEDEYRNKGVAY----------CPHCDG 349
Query: 1202 -ITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESL-GKEVGERITKLFES 1259
+ V VIG G+EAA A V+ VT++ F L V + KL
Sbjct: 350 PLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLL-----EFAPELKADAVLQD--KLRSL 402
Query: 1260 KGVKFVMKANVSSFEKNEKNDVTAANL---DNGTTIPADL--VIVGIGTVLNTNYLDGKG 1314
V + A + K + + VT +G +L V V IG + NT +L G
Sbjct: 403 PNVTIITNAQTTEV-KGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGA- 460
Query: 1315 VELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 1346
VELN + ++V+ ETNVPGV+A GD P
Sbjct: 461 VELNRRGEIIVDARGETNVPGVFAAGDCTTVP 492
|
Length = 520 |
| >gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 6e-10
Identities = 84/341 (24%), Positives = 142/341 (41%), Gaps = 77/341 (22%)
Query: 25 ELKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFT-----------GKLYF 73
E ++ +P +G K V+G GP+G + L + G+ G L +
Sbjct: 415 ERESGNISVPEVAEKNGKK--VAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKY 472
Query: 74 ITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQ 133
E LP V D++ +++ +F D VI GK I + EL E+
Sbjct: 473 GIPEFRLPKKIV------DVEIENLKKLGVKFETD----VIVGKTITIE-ELEEEG---- 517
Query: 134 DGTSIDFTKIYLATGSS-PRTIS-QADGVNKVF----YLRTVE--DANN--IAPHITPES 183
F I++A+G+ P ++ + N V YL V DA + I
Sbjct: 518 ------FKGIFIASGAGLPNFMNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGK 571
Query: 184 NVVVIGSSFIGMEAAAFCASKVKS--VTVVGRGAVPFQESLGKEVGERITKLFESK--GV 239
V V+G M++A A ++ + VT+V R + +E+ R+ ++ +K G+
Sbjct: 572 KVAVVGGGNTAMDSAR-TAKRLGAERVTIVYRRS-------EEEMPARLEEVKHAKEEGI 623
Query: 240 KFVMKANVSSFEKNEKNDVTAANLD--------------------NGTTIPADLVIVGIG 279
+F+ N + +EK V L + T+ DLVIV +G
Sbjct: 624 EFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVG 683
Query: 280 TVLNTNYLDG-KGVELNGQKAVVVNEYLETNVPGVYAGGDI 319
N G+ELN + +VV+E +++++PG+YAGGDI
Sbjct: 684 VSPNPLVPSSIPGLELNRKGTIVVDEEMQSSIPGIYAGGDI 724
|
Length = 752 |
| >gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 6e-10
Identities = 84/341 (24%), Positives = 142/341 (41%), Gaps = 77/341 (22%)
Query: 577 ELKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFT-----------GKLYF 625
E ++ +P +G K V+G GP+G + L + G+ G L +
Sbjct: 415 ERESGNISVPEVAEKNGKK--VAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKY 472
Query: 626 ITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQ 685
E LP V D++ +++ +F D VI GK I + EL E+
Sbjct: 473 GIPEFRLPKKIV------DVEIENLKKLGVKFETD----VIVGKTITIE-ELEEEG---- 517
Query: 686 DGTSIDFTKIYLATGSS-PRTIS-QADGVNKVF----YLRTVE--DANN--IAPHITPES 735
F I++A+G+ P ++ + N V YL V DA + I
Sbjct: 518 ------FKGIFIASGAGLPNFMNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGK 571
Query: 736 NVVVIGSSFIGMEAAAFCASKVKS--VTVVGRGAVPFQESLGKEVGERITKLFESK--GV 791
V V+G M++A A ++ + VT+V R + +E+ R+ ++ +K G+
Sbjct: 572 KVAVVGGGNTAMDSAR-TAKRLGAERVTIVYRRS-------EEEMPARLEEVKHAKEEGI 623
Query: 792 KFVMKANVSSFEKNEKNDVTAANLD--------------------NGTTIPADLVIVGIG 831
+F+ N + +EK V L + T+ DLVIV +G
Sbjct: 624 EFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVG 683
Query: 832 TVLNTNYLDG-KGVELNGQKAVVVNEYLETNVPGVYAGGDI 871
N G+ELN + +VV+E +++++PG+YAGGDI
Sbjct: 684 VSPNPLVPSSIPGLELNRKGTIVVDEEMQSSIPGIYAGGDI 724
|
Length = 752 |
| >gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 6e-10
Identities = 84/341 (24%), Positives = 142/341 (41%), Gaps = 77/341 (22%)
Query: 1048 ELKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFT-----------GKLYF 1096
E ++ +P +G K V+G GP+G + L + G+ G L +
Sbjct: 415 ERESGNISVPEVAEKNGKK--VAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKY 472
Query: 1097 ITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQ 1156
E LP V D++ +++ +F D VI GK I + EL E+
Sbjct: 473 GIPEFRLPKKIV------DVEIENLKKLGVKFETD----VIVGKTITIE-ELEEEG---- 517
Query: 1157 DGTSIDFTKIYLATGSS-PRTIS-QADGVNKVF----YLRTVE--DANN--IAPHITPES 1206
F I++A+G+ P ++ + N V YL V DA + I
Sbjct: 518 ------FKGIFIASGAGLPNFMNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGK 571
Query: 1207 NVVVIGSSFIGMEAAAFCASKVKS--VTVVGRGAVPFQESLGKEVGERITKLFESK--GV 1262
V V+G M++A A ++ + VT+V R + +E+ R+ ++ +K G+
Sbjct: 572 KVAVVGGGNTAMDSAR-TAKRLGAERVTIVYRRS-------EEEMPARLEEVKHAKEEGI 623
Query: 1263 KFVMKANVSSFEKNEKNDVTAANLD--------------------NGTTIPADLVIVGIG 1302
+F+ N + +EK V L + T+ DLVIV +G
Sbjct: 624 EFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVG 683
Query: 1303 TVLNTNYLDG-KGVELNGQKAVVVNEYLETNVPGVYAGGDI 1342
N G+ELN + +VV+E +++++PG+YAGGDI
Sbjct: 684 VSPNPLVPSSIPGLELNRKGTIVVDEEMQSSIPGIYAGGDI 724
|
Length = 752 |
| >gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 6e-10
Identities = 54/222 (24%), Positives = 94/222 (42%), Gaps = 28/222 (12%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGV------ 160
+ N + VI G + + +++ G I +ATG P G
Sbjct: 102 EKNKVDVIFGHARFTK----DGTVEVN-GRDYTAPHILIATGGKPSFPENIPGAELGTDS 156
Query: 161 NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQE 220
+ F L + P+ VV++G+ +I +E A +V R +
Sbjct: 157 DGFFALEEL-----------PKR-VVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR- 203
Query: 221 SLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIP-ADLVIVGIG 279
S + E IT+ +E +G+ + EK + + + ++G +I D +I IG
Sbjct: 204 SFDSMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVI-HFEDGKSIDDVDELIWAIG 262
Query: 280 TVLNTN--YLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 319
NT L+ G++LN + ++V+EY TNVPG+YA GD+
Sbjct: 263 RKPNTKGLGLENVGIKLNEKGQIIVDEYQNTNVPGIYALGDV 304
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria [Energy metabolism, Electron transport]. Length = 450 |
| >gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 6e-10
Identities = 54/222 (24%), Positives = 94/222 (42%), Gaps = 28/222 (12%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGV------ 712
+ N + VI G + + +++ G I +ATG P G
Sbjct: 102 EKNKVDVIFGHARFTK----DGTVEVN-GRDYTAPHILIATGGKPSFPENIPGAELGTDS 156
Query: 713 NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQE 772
+ F L + P+ VV++G+ +I +E A +V R +
Sbjct: 157 DGFFALEEL-----------PKR-VVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR- 203
Query: 773 SLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIP-ADLVIVGIG 831
S + E IT+ +E +G+ + EK + + + ++G +I D +I IG
Sbjct: 204 SFDSMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVI-HFEDGKSIDDVDELIWAIG 262
Query: 832 TVLNTN--YLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 871
NT L+ G++LN + ++V+EY TNVPG+YA GD+
Sbjct: 263 RKPNTKGLGLENVGIKLNEKGQIIVDEYQNTNVPGIYALGDV 304
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria [Energy metabolism, Electron transport]. Length = 450 |
| >gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 6e-10
Identities = 54/222 (24%), Positives = 94/222 (42%), Gaps = 28/222 (12%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGV------ 1183
+ N + VI G + + +++ G I +ATG P G
Sbjct: 102 EKNKVDVIFGHARFTK----DGTVEVN-GRDYTAPHILIATGGKPSFPENIPGAELGTDS 156
Query: 1184 NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQE 1243
+ F L + P+ VV++G+ +I +E A +V R +
Sbjct: 157 DGFFALEEL-----------PKR-VVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR- 203
Query: 1244 SLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIP-ADLVIVGIG 1302
S + E IT+ +E +G+ + EK + + + ++G +I D +I IG
Sbjct: 204 SFDSMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVI-HFEDGKSIDDVDELIWAIG 262
Query: 1303 TVLNTN--YLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 1342
NT L+ G++LN + ++V+EY TNVPG+YA GD+
Sbjct: 263 RKPNTKGLGLENVGIKLNEKGQIIVDEYQNTNVPGIYALGDV 304
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria [Energy metabolism, Electron transport]. Length = 450 |
| >gnl|CDD|237942 PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (151), Expect = 2e-09
Identities = 92/332 (27%), Positives = 133/332 (40%), Gaps = 88/332 (26%)
Query: 36 AKLSSG----------NKDTF--IVVGGGPSGAT-CVETLRQNGFTGKLYFITD------ 76
AKL +G KD + +VVGGGP+GA + R+ TG + +
Sbjct: 192 AKLDTGAAARAAEELNAKDPYDVLVVGGGPAGAAAAIYAARKGIRTG---IVAERFGGQV 248
Query: 77 ------ENF--LPY-DRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKG---KKIISDSE 124
ENF +P + KL+ L EE K+ D+ ++ K+ +
Sbjct: 249 LDTMGIENFISVPETEGPKLAAAL-----------EEHVKEYDVDIMNLQRASKLEPAAG 297
Query: 125 LNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGV-------NK-VFYLRTVEDANNIA 176
L E ++L +G + + LATG+ R + V NK V Y
Sbjct: 298 LIE--VELANGAVLKAKTVILATGARWRNM----NVPGEDEYRNKGVAY----------C 341
Query: 177 PH----ITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESL-GKEVGERIT 231
PH + V VIG G+EAA A VK VTV+ F L +V +
Sbjct: 342 PHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVL-----EFAPELKADQVLQD-- 394
Query: 232 KLFESKGVKFVMKANVSSFEKNEKNDVTAANL-DNGT----TIPADLVIVGIGTVLNTNY 286
KL V + A + + VT D T + + V V IG V NT +
Sbjct: 395 KLRSLPNVTIITNAQTTEVTGDGDK-VTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEW 453
Query: 287 LDGKGVELNGQKAVVVNEYLETNVPGVYAGGD 318
L G VELN + ++V+ T+VPGV+A GD
Sbjct: 454 LKGT-VELNRRGEIIVDARGATSVPGVFAAGD 484
|
Length = 517 |
| >gnl|CDD|237942 PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (151), Expect = 2e-09
Identities = 92/332 (27%), Positives = 133/332 (40%), Gaps = 88/332 (26%)
Query: 588 AKLSSG----------NKDTF--IVVGGGPSGAT-CVETLRQNGFTGKLYFITD------ 628
AKL +G KD + +VVGGGP+GA + R+ TG + +
Sbjct: 192 AKLDTGAAARAAEELNAKDPYDVLVVGGGPAGAAAAIYAARKGIRTG---IVAERFGGQV 248
Query: 629 ------ENF--LPY-DRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKG---KKIISDSE 676
ENF +P + KL+ L EE K+ D+ ++ K+ +
Sbjct: 249 LDTMGIENFISVPETEGPKLAAAL-----------EEHVKEYDVDIMNLQRASKLEPAAG 297
Query: 677 LNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGV-------NK-VFYLRTVEDANNIA 728
L E ++L +G + + LATG+ R + V NK V Y
Sbjct: 298 LIE--VELANGAVLKAKTVILATGARWRNM----NVPGEDEYRNKGVAY----------C 341
Query: 729 PH----ITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESL-GKEVGERIT 783
PH + V VIG G+EAA A VK VTV+ F L +V +
Sbjct: 342 PHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVL-----EFAPELKADQVLQD-- 394
Query: 784 KLFESKGVKFVMKANVSSFEKNEKNDVTAANL-DNGT----TIPADLVIVGIGTVLNTNY 838
KL V + A + + VT D T + + V V IG V NT +
Sbjct: 395 KLRSLPNVTIITNAQTTEVTGDGDK-VTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEW 453
Query: 839 LDGKGVELNGQKAVVVNEYLETNVPGVYAGGD 870
L G VELN + ++V+ T+VPGV+A GD
Sbjct: 454 LKGT-VELNRRGEIIVDARGATSVPGVFAAGD 484
|
Length = 517 |
| >gnl|CDD|237942 PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (151), Expect = 2e-09
Identities = 92/332 (27%), Positives = 133/332 (40%), Gaps = 88/332 (26%)
Query: 1059 AKLSSG----------NKDTF--IVVGGGPSGAT-CVETLRQNGFTGKLYFITD------ 1099
AKL +G KD + +VVGGGP+GA + R+ TG + +
Sbjct: 192 AKLDTGAAARAAEELNAKDPYDVLVVGGGPAGAAAAIYAARKGIRTG---IVAERFGGQV 248
Query: 1100 ------ENF--LPY-DRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKG---KKIISDSE 1147
ENF +P + KL+ L EE K+ D+ ++ K+ +
Sbjct: 249 LDTMGIENFISVPETEGPKLAAAL-----------EEHVKEYDVDIMNLQRASKLEPAAG 297
Query: 1148 LNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGV-------NK-VFYLRTVEDANNIA 1199
L E ++L +G + + LATG+ R + V NK V Y
Sbjct: 298 LIE--VELANGAVLKAKTVILATGARWRNM----NVPGEDEYRNKGVAY----------C 341
Query: 1200 PH----ITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESL-GKEVGERIT 1254
PH + V VIG G+EAA A VK VTV+ F L +V +
Sbjct: 342 PHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVL-----EFAPELKADQVLQD-- 394
Query: 1255 KLFESKGVKFVMKANVSSFEKNEKNDVTAANL-DNGT----TIPADLVIVGIGTVLNTNY 1309
KL V + A + + VT D T + + V V IG V NT +
Sbjct: 395 KLRSLPNVTIITNAQTTEVTGDGDK-VTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEW 453
Query: 1310 LDGKGVELNGQKAVVVNEYLETNVPGVYAGGD 1341
L G VELN + ++V+ T+VPGV+A GD
Sbjct: 454 LKGT-VELNRRGEIIVDARGATSVPGVFAAGD 484
|
Length = 517 |
| >gnl|CDD|236112 PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 4e-09
Identities = 63/219 (28%), Positives = 107/219 (48%), Gaps = 24/219 (10%)
Query: 111 IHVIKGKKIISDSELNEKKIKLQDGT----SIDFTKIYLATGSSPRTISQA--DGVNKVF 164
+ VI G+ + D L ++K+ ++D + +ATG+SPR + A DG ++
Sbjct: 107 VRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILPTAEPDG-ERIL 165
Query: 165 YLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCASKVKSVTVVG-RGAV-PFQES 221
R + D + + H+ +V+GS G E A+A+ VK VT+V R V P +++
Sbjct: 166 TWRQLYDLDELPEHL------IVVGSGVTGAEFASAYTELGVK-VTLVSSRDRVLPGEDA 218
Query: 222 LGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTV 281
EV E + F +G+ + ++ S E+ D L +G T+ ++ +G+V
Sbjct: 219 DAAEVLEEV---FARRGMTVLKRSRAESVERTG--DGVVVTLTDGRTVEGSHALMAVGSV 273
Query: 282 LNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGD 318
NT L+ GVEL + V+ T+VPG+YA GD
Sbjct: 274 PNTAGLGLEEAGVELTPSGHITVDRVSRTSVPGIYAAGD 312
|
Length = 466 |
| >gnl|CDD|236112 PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 4e-09
Identities = 63/219 (28%), Positives = 107/219 (48%), Gaps = 24/219 (10%)
Query: 663 IHVIKGKKIISDSELNEKKIKLQDGT----SIDFTKIYLATGSSPRTISQA--DGVNKVF 716
+ VI G+ + D L ++K+ ++D + +ATG+SPR + A DG ++
Sbjct: 107 VRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILPTAEPDG-ERIL 165
Query: 717 YLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCASKVKSVTVVG-RGAV-PFQES 773
R + D + + H+ +V+GS G E A+A+ VK VT+V R V P +++
Sbjct: 166 TWRQLYDLDELPEHL------IVVGSGVTGAEFASAYTELGVK-VTLVSSRDRVLPGEDA 218
Query: 774 LGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTV 833
EV E + F +G+ + ++ S E+ D L +G T+ ++ +G+V
Sbjct: 219 DAAEVLEEV---FARRGMTVLKRSRAESVERTG--DGVVVTLTDGRTVEGSHALMAVGSV 273
Query: 834 LNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGD 870
NT L+ GVEL + V+ T+VPG+YA GD
Sbjct: 274 PNTAGLGLEEAGVELTPSGHITVDRVSRTSVPGIYAAGD 312
|
Length = 466 |
| >gnl|CDD|236112 PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 4e-09
Identities = 63/219 (28%), Positives = 107/219 (48%), Gaps = 24/219 (10%)
Query: 1134 IHVIKGKKIISDSELNEKKIKLQDGT----SIDFTKIYLATGSSPRTISQA--DGVNKVF 1187
+ VI G+ + D L ++K+ ++D + +ATG+SPR + A DG ++
Sbjct: 107 VRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILPTAEPDG-ERIL 165
Query: 1188 YLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCASKVKSVTVVG-RGAV-PFQES 1244
R + D + + H+ +V+GS G E A+A+ VK VT+V R V P +++
Sbjct: 166 TWRQLYDLDELPEHL------IVVGSGVTGAEFASAYTELGVK-VTLVSSRDRVLPGEDA 218
Query: 1245 LGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTV 1304
EV E + F +G+ + ++ S E+ D L +G T+ ++ +G+V
Sbjct: 219 DAAEVLEEV---FARRGMTVLKRSRAESVERTG--DGVVVTLTDGRTVEGSHALMAVGSV 273
Query: 1305 LNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGD 1341
NT L+ GVEL + V+ T+VPG+YA GD
Sbjct: 274 PNTAGLGLEEAGVELTPSGHITVDRVSRTSVPGIYAAGD 312
|
Length = 466 |
| >gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 2e-08
Identities = 44/168 (26%), Positives = 69/168 (41%), Gaps = 19/168 (11%)
Query: 187 VIGSSFIGMEAAAFCASKVKSVTV--VGRGAVPFQESLGKEVGERITKLFESKGVKFVMK 244
+IG IG+E A VTV +P +E V + E G+ F++
Sbjct: 162 IIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREE---PSVAALAKQYMEEDGITFLLN 218
Query: 245 ANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTN--YLDGKGVELNGQKAVVV 302
A+ + KN+ + V T D ++ G NT L+ +EL + A+ V
Sbjct: 219 AHTTEV-KNDGDQVLVVT--EDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKV 275
Query: 303 NEYLETNVPGVYAGGDI------AYAPLHSF---YNKNASIGHYQLAQ 341
++Y +T+VPGV+A GD+ Y L F + G Y L
Sbjct: 276 DDYCQTSVPGVFAVGDVNGGPQFTYISLDDFRIVFGYLTGDGSYTLED 323
|
Length = 438 |
| >gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 2e-08
Identities = 44/168 (26%), Positives = 69/168 (41%), Gaps = 19/168 (11%)
Query: 739 VIGSSFIGMEAAAFCASKVKSVTV--VGRGAVPFQESLGKEVGERITKLFESKGVKFVMK 796
+IG IG+E A VTV +P +E V + E G+ F++
Sbjct: 162 IIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREE---PSVAALAKQYMEEDGITFLLN 218
Query: 797 ANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTN--YLDGKGVELNGQKAVVV 854
A+ + KN+ + V T D ++ G NT L+ +EL + A+ V
Sbjct: 219 AHTTEV-KNDGDQVLVVT--EDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKV 275
Query: 855 NEYLETNVPGVYAGGDI------AYAPLHSF---YNKNASIGHYQLAQ 893
++Y +T+VPGV+A GD+ Y L F + G Y L
Sbjct: 276 DDYCQTSVPGVFAVGDVNGGPQFTYISLDDFRIVFGYLTGDGSYTLED 323
|
Length = 438 |
| >gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 2e-08
Identities = 44/168 (26%), Positives = 69/168 (41%), Gaps = 19/168 (11%)
Query: 1210 VIGSSFIGMEAAAFCASKVKSVTV--VGRGAVPFQESLGKEVGERITKLFESKGVKFVMK 1267
+IG IG+E A VTV +P +E V + E G+ F++
Sbjct: 162 IIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREE---PSVAALAKQYMEEDGITFLLN 218
Query: 1268 ANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTN--YLDGKGVELNGQKAVVV 1325
A+ + KN+ + V T D ++ G NT L+ +EL + A+ V
Sbjct: 219 AHTTEV-KNDGDQVLVVT--EDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKV 275
Query: 1326 NEYLETNVPGVYAGGDI------AYAPLHSF---YNKNASIGHYQLAQ 1364
++Y +T+VPGV+A GD+ Y L F + G Y L
Sbjct: 276 DDYCQTSVPGVFAVGDVNGGPQFTYISLDDFRIVFGYLTGDGSYTLED 323
|
Length = 438 |
| >gnl|CDD|215281 PLN02507, PLN02507, glutathione reductase | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 2e-08
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 5/137 (3%)
Query: 185 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMK 244
VV+G +I +E A+ +V + R +P + E+ + + E +G+ +
Sbjct: 206 AVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLR-GFDDEMRAVVARNLEGRGINLHPR 264
Query: 245 ANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVV 302
N++ K E D+G AD+V+ G NT L+ GVEL+ AV V
Sbjct: 265 TNLTQLTKTE--GGIKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKV 322
Query: 303 NEYLETNVPGVYAGGDI 319
+EY TN+P ++A GD+
Sbjct: 323 DEYSRTNIPSIWAIGDV 339
|
Length = 499 |
| >gnl|CDD|215281 PLN02507, PLN02507, glutathione reductase | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 2e-08
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 5/137 (3%)
Query: 737 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMK 796
VV+G +I +E A+ +V + R +P + E+ + + E +G+ +
Sbjct: 206 AVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLR-GFDDEMRAVVARNLEGRGINLHPR 264
Query: 797 ANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVV 854
N++ K E D+G AD+V+ G NT L+ GVEL+ AV V
Sbjct: 265 TNLTQLTKTE--GGIKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKV 322
Query: 855 NEYLETNVPGVYAGGDI 871
+EY TN+P ++A GD+
Sbjct: 323 DEYSRTNIPSIWAIGDV 339
|
Length = 499 |
| >gnl|CDD|215281 PLN02507, PLN02507, glutathione reductase | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 2e-08
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 5/137 (3%)
Query: 1208 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMK 1267
VV+G +I +E A+ +V + R +P + E+ + + E +G+ +
Sbjct: 206 AVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLR-GFDDEMRAVVARNLEGRGINLHPR 264
Query: 1268 ANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVV 1325
N++ K E D+G AD+V+ G NT L+ GVEL+ AV V
Sbjct: 265 TNLTQLTKTE--GGIKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKV 322
Query: 1326 NEYLETNVPGVYAGGDI 1342
+EY TN+P ++A GD+
Sbjct: 323 DEYSRTNIPSIWAIGDV 339
|
Length = 499 |
| >gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 3e-08
Identities = 86/383 (22%), Positives = 147/383 (38%), Gaps = 94/383 (24%)
Query: 14 DDSVVVQARK----DELKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTG 69
DD+V + A + D K P +G + V+GGGP+G + LR+ G
Sbjct: 106 DDAVGINAVERFLGDYAIANGWKFPAPAPDTGKR--VAVIGGGPAGLSAAYHLRRMGHAV 163
Query: 70 KLYFITDEN--------F------LPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIK 115
++ + + LP + LD + IL D + V
Sbjct: 164 TIF---EAGPKLGGMMRYGIPAYRLPREV------LDAEIQRIL--------DLGVEVRL 206
Query: 116 GKKIISDSELNEKKIKLQDGTSIDFTKIYLATG-SSPRTI----SQADGV-NKVFYLRTV 169
G ++ D L + +G +F +++A G + + A GV + V +LR V
Sbjct: 207 GVRVGEDITLEQ-----LEG---EFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAV 258
Query: 170 EDANNIAPHITPESNVVVIGSSFIGMEAAAFCASK---VKSVTVVGRGAVPFQESLGKEV 226
+ P + VVVIG M+AA ++ + VT+V R + +E+
Sbjct: 259 GEGE--PPFLG--KRVVVIGGGNTAMDAAR--TARRLGAEEVTIVYRRTREDMPAHDEEI 312
Query: 227 GERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANL--------DNGT---------TI 269
E +GV+ E +E + ++G T+
Sbjct: 313 EEA-----LREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETL 367
Query: 270 PADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNE-YLETNVPGVYAGGDIAYAPLHSFY 328
ADLV++ IG +++ L+ G+ V V+ ++ T PGV+AGGD+ P +
Sbjct: 368 EADLVVLAIGQDIDSAGLESVPGVEVGRGVVQVDPNFMMTGRPGVFAGGDMVPGP-RTV- 425
Query: 329 NKNASIGHYQLAQYHGRIAALNM 351
+IG HG+ AA N+
Sbjct: 426 --TTAIG-------HGKKAARNI 439
|
Length = 564 |
| >gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 3e-08
Identities = 86/383 (22%), Positives = 147/383 (38%), Gaps = 94/383 (24%)
Query: 566 DDSVVVQARK----DELKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTG 621
DD+V + A + D K P +G + V+GGGP+G + LR+ G
Sbjct: 106 DDAVGINAVERFLGDYAIANGWKFPAPAPDTGKR--VAVIGGGPAGLSAAYHLRRMGHAV 163
Query: 622 KLYFITDEN--------F------LPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIK 667
++ + + LP + LD + IL D + V
Sbjct: 164 TIF---EAGPKLGGMMRYGIPAYRLPREV------LDAEIQRIL--------DLGVEVRL 206
Query: 668 GKKIISDSELNEKKIKLQDGTSIDFTKIYLATG-SSPRTI----SQADGV-NKVFYLRTV 721
G ++ D L + +G +F +++A G + + A GV + V +LR V
Sbjct: 207 GVRVGEDITLEQ-----LEG---EFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAV 258
Query: 722 EDANNIAPHITPESNVVVIGSSFIGMEAAAFCASK---VKSVTVVGRGAVPFQESLGKEV 778
+ P + VVVIG M+AA ++ + VT+V R + +E+
Sbjct: 259 GEGE--PPFLG--KRVVVIGGGNTAMDAAR--TARRLGAEEVTIVYRRTREDMPAHDEEI 312
Query: 779 GERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANL--------DNGT---------TI 821
E +GV+ E +E + ++G T+
Sbjct: 313 EEA-----LREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETL 367
Query: 822 PADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNE-YLETNVPGVYAGGDIAYAPLHSFY 880
ADLV++ IG +++ L+ G+ V V+ ++ T PGV+AGGD+ P +
Sbjct: 368 EADLVVLAIGQDIDSAGLESVPGVEVGRGVVQVDPNFMMTGRPGVFAGGDMVPGP-RTV- 425
Query: 881 NKNASIGHYQLAQYHGRIAALNM 903
+IG HG+ AA N+
Sbjct: 426 --TTAIG-------HGKKAARNI 439
|
Length = 564 |
| >gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 3e-08
Identities = 86/383 (22%), Positives = 147/383 (38%), Gaps = 94/383 (24%)
Query: 1037 DDSVVVQARK----DELKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTG 1092
DD+V + A + D K P +G + V+GGGP+G + LR+ G
Sbjct: 106 DDAVGINAVERFLGDYAIANGWKFPAPAPDTGKR--VAVIGGGPAGLSAAYHLRRMGHAV 163
Query: 1093 KLYFITDEN--------F------LPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIK 1138
++ + + LP + LD + IL D + V
Sbjct: 164 TIF---EAGPKLGGMMRYGIPAYRLPREV------LDAEIQRIL--------DLGVEVRL 206
Query: 1139 GKKIISDSELNEKKIKLQDGTSIDFTKIYLATG-SSPRTI----SQADGV-NKVFYLRTV 1192
G ++ D L + +G +F +++A G + + A GV + V +LR V
Sbjct: 207 GVRVGEDITLEQ-----LEG---EFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAV 258
Query: 1193 EDANNIAPHITPESNVVVIGSSFIGMEAAAFCASK---VKSVTVVGRGAVPFQESLGKEV 1249
+ P + VVVIG M+AA ++ + VT+V R + +E+
Sbjct: 259 GEGE--PPFLG--KRVVVIGGGNTAMDAAR--TARRLGAEEVTIVYRRTREDMPAHDEEI 312
Query: 1250 GERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANL--------DNGT---------TI 1292
E +GV+ E +E + ++G T+
Sbjct: 313 EEA-----LREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETL 367
Query: 1293 PADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNE-YLETNVPGVYAGGDIAYAPLHSFY 1351
ADLV++ IG +++ L+ G+ V V+ ++ T PGV+AGGD+ P +
Sbjct: 368 EADLVVLAIGQDIDSAGLESVPGVEVGRGVVQVDPNFMMTGRPGVFAGGDMVPGP-RTV- 425
Query: 1352 NKNASIGHYQLAQYHGRIAALNM 1374
+IG HG+ AA N+
Sbjct: 426 --TTAIG-------HGKKAARNI 439
|
Length = 564 |
| >gnl|CDD|170182 PRK09965, PRK09965, 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 5e-08
Identities = 29/82 (35%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 962 LTVGMDPLAAQF-AERNIYAVGTKCSHYGAPLVKGSL-GDGRVRCPWHGACFNIATGDIE 1019
L V P+ A F YA+ +CSH A L +G L D V CP H A F + TG
Sbjct: 18 LRVDTSPVIALFNVGGEFYAIDDRCSHGNASLSEGYLEDDATVECPLHAASFCLRTGKAL 77
Query: 1020 DFPGMDSLPCYKVTIQNDDSVV 1041
P D L Y V ++ D +
Sbjct: 78 CLPATDPLRTYPVHVEGGDIFI 99
|
Length = 106 |
| >gnl|CDD|180743 PRK06912, acoL, dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 5e-08
Identities = 69/256 (26%), Positives = 109/256 (42%), Gaps = 44/256 (17%)
Query: 107 KDNDIHVIKGK-KIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQA--DGVNKV 163
K N I VI+GK +D + + ++ +D + +A GS P + A DG
Sbjct: 101 KKNKIKVIQGKASFETDHRVRVEYGDKEE--VVDAEQFIIAAGSEPTELPFAPFDGK--- 155
Query: 164 FYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLG 223
++ + A ++ P I P S ++++G IG E A+ + VT+V L
Sbjct: 156 -WIINSKHAMSL-PSI-PSS-LLIVGGGVIGCEFASIYSRLGTKVTIVEMA-----PQLL 206
Query: 224 KEVGERITKLF----ESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 279
E I + E+ GVK A + + K + + A+ V+V +G
Sbjct: 207 PGEDEDIAHILREKLENDGVKIFTGAALKGLN-SYKKQALFEYEGSIQEVNAEFVLVSVG 265
Query: 280 ---TVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGH 336
V N L+ GV+ K + VNE+++TNVP +YA GD+ IG
Sbjct: 266 RKPRVQQLN-LEKAGVQF-SNKGISVNEHMQTNVPHIYACGDV--------------IGG 309
Query: 337 YQLAQ--YH-GRIAAL 349
QLA +H G AAL
Sbjct: 310 IQLAHVAFHEGTTAAL 325
|
Length = 458 |
| >gnl|CDD|180743 PRK06912, acoL, dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 5e-08
Identities = 69/256 (26%), Positives = 109/256 (42%), Gaps = 44/256 (17%)
Query: 659 KDNDIHVIKGK-KIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQA--DGVNKV 715
K N I VI+GK +D + + ++ +D + +A GS P + A DG
Sbjct: 101 KKNKIKVIQGKASFETDHRVRVEYGDKEE--VVDAEQFIIAAGSEPTELPFAPFDGK--- 155
Query: 716 FYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLG 775
++ + A ++ P I P S ++++G IG E A+ + VT+V L
Sbjct: 156 -WIINSKHAMSL-PSI-PSS-LLIVGGGVIGCEFASIYSRLGTKVTIVEMA-----PQLL 206
Query: 776 KEVGERITKLF----ESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 831
E I + E+ GVK A + + K + + A+ V+V +G
Sbjct: 207 PGEDEDIAHILREKLENDGVKIFTGAALKGLN-SYKKQALFEYEGSIQEVNAEFVLVSVG 265
Query: 832 ---TVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGH 888
V N L+ GV+ K + VNE+++TNVP +YA GD+ IG
Sbjct: 266 RKPRVQQLN-LEKAGVQF-SNKGISVNEHMQTNVPHIYACGDV--------------IGG 309
Query: 889 YQLAQ--YH-GRIAAL 901
QLA +H G AAL
Sbjct: 310 IQLAHVAFHEGTTAAL 325
|
Length = 458 |
| >gnl|CDD|180743 PRK06912, acoL, dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 5e-08
Identities = 69/256 (26%), Positives = 109/256 (42%), Gaps = 44/256 (17%)
Query: 1130 KDNDIHVIKGK-KIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQA--DGVNKV 1186
K N I VI+GK +D + + ++ +D + +A GS P + A DG
Sbjct: 101 KKNKIKVIQGKASFETDHRVRVEYGDKEE--VVDAEQFIIAAGSEPTELPFAPFDGK--- 155
Query: 1187 FYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLG 1246
++ + A ++ P I P S ++++G IG E A+ + VT+V L
Sbjct: 156 -WIINSKHAMSL-PSI-PSS-LLIVGGGVIGCEFASIYSRLGTKVTIVEMA-----PQLL 206
Query: 1247 KEVGERITKLF----ESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 1302
E I + E+ GVK A + + K + + A+ V+V +G
Sbjct: 207 PGEDEDIAHILREKLENDGVKIFTGAALKGLN-SYKKQALFEYEGSIQEVNAEFVLVSVG 265
Query: 1303 ---TVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGH 1359
V N L+ GV+ K + VNE+++TNVP +YA GD+ IG
Sbjct: 266 RKPRVQQLN-LEKAGVQF-SNKGISVNEHMQTNVPHIYACGDV--------------IGG 309
Query: 1360 YQLAQ--YH-GRIAAL 1372
QLA +H G AAL
Sbjct: 310 IQLAHVAFHEGTTAAL 325
|
Length = 458 |
| >gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 1e-07
Identities = 73/301 (24%), Positives = 114/301 (37%), Gaps = 58/301 (19%)
Query: 47 IVVGGGPSGATC-VETLRQN-------GFT--GKLYFITD-ENFLPYDRVKLSKQL--DI 93
I++G GP+G T + R N G G+L T+ EN+ + +L +
Sbjct: 3 IIIGAGPAGLTAAIYAARANLKPLLIEGGEPGGQLTTTTEVENYPGFPEGISGPELMEKM 62
Query: 94 KADSILLRTEEFYKDNDIHVIKGKKIISDSELNE-KKIKLQDGTSIDFTKIYLATGSSPR 152
K ++ E Y++ +I + K+ DG + +ATG+S R
Sbjct: 63 KEQAVKFGAEIIYEE----------VIKVDKSGRPFKVYTGDGKEYTAKAVIIATGASAR 112
Query: 153 TISQADGV--NKVFYLRTVE-----DANNIAPHITPESNVVVIGSSFIGMEAAAFCASKV 205
+ G+ F+ R V D V V+G +E A +
Sbjct: 113 KL----GIPGEDEFWGRGVSYCATCDG-----PFFKNKEVAVVGGGDSAIEEALYLTRIA 163
Query: 206 KSVTVVGRG----AVPF-QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTA 260
K VT+V R A + L K +I L+ S + V V V
Sbjct: 164 KKVTLVHRRDKFRAEKILLDRLKKN--PKIEFLWNSTVKEIVGDNKVEG--------VKI 213
Query: 261 ANLDNG--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGD 318
N G + D V + IG NT L G +EL+ +V +E + T+VPGV+A GD
Sbjct: 214 KNTVTGEEEELEVDGVFIAIGHEPNTELLKGL-LELDENGYIVTDEGMRTSVPGVFAAGD 272
Query: 319 I 319
+
Sbjct: 273 V 273
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070) [Energy metabolism, Electron transport]. Length = 299 |
| >gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 1e-07
Identities = 73/301 (24%), Positives = 114/301 (37%), Gaps = 58/301 (19%)
Query: 599 IVVGGGPSGATC-VETLRQN-------GFT--GKLYFITD-ENFLPYDRVKLSKQL--DI 645
I++G GP+G T + R N G G+L T+ EN+ + +L +
Sbjct: 3 IIIGAGPAGLTAAIYAARANLKPLLIEGGEPGGQLTTTTEVENYPGFPEGISGPELMEKM 62
Query: 646 KADSILLRTEEFYKDNDIHVIKGKKIISDSELNE-KKIKLQDGTSIDFTKIYLATGSSPR 704
K ++ E Y++ +I + K+ DG + +ATG+S R
Sbjct: 63 KEQAVKFGAEIIYEE----------VIKVDKSGRPFKVYTGDGKEYTAKAVIIATGASAR 112
Query: 705 TISQADGV--NKVFYLRTVE-----DANNIAPHITPESNVVVIGSSFIGMEAAAFCASKV 757
+ G+ F+ R V D V V+G +E A +
Sbjct: 113 KL----GIPGEDEFWGRGVSYCATCDG-----PFFKNKEVAVVGGGDSAIEEALYLTRIA 163
Query: 758 KSVTVVGRG----AVPF-QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTA 812
K VT+V R A + L K +I L+ S + V V V
Sbjct: 164 KKVTLVHRRDKFRAEKILLDRLKKN--PKIEFLWNSTVKEIVGDNKVEG--------VKI 213
Query: 813 ANLDNG--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGD 870
N G + D V + IG NT L G +EL+ +V +E + T+VPGV+A GD
Sbjct: 214 KNTVTGEEEELEVDGVFIAIGHEPNTELLKGL-LELDENGYIVTDEGMRTSVPGVFAAGD 272
Query: 871 I 871
+
Sbjct: 273 V 273
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070) [Energy metabolism, Electron transport]. Length = 299 |
| >gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 1e-07
Identities = 73/301 (24%), Positives = 114/301 (37%), Gaps = 58/301 (19%)
Query: 1070 IVVGGGPSGATC-VETLRQN-------GFT--GKLYFITD-ENFLPYDRVKLSKQL--DI 1116
I++G GP+G T + R N G G+L T+ EN+ + +L +
Sbjct: 3 IIIGAGPAGLTAAIYAARANLKPLLIEGGEPGGQLTTTTEVENYPGFPEGISGPELMEKM 62
Query: 1117 KADSILLRTEEFYKDNDIHVIKGKKIISDSELNE-KKIKLQDGTSIDFTKIYLATGSSPR 1175
K ++ E Y++ +I + K+ DG + +ATG+S R
Sbjct: 63 KEQAVKFGAEIIYEE----------VIKVDKSGRPFKVYTGDGKEYTAKAVIIATGASAR 112
Query: 1176 TISQADGV--NKVFYLRTVE-----DANNIAPHITPESNVVVIGSSFIGMEAAAFCASKV 1228
+ G+ F+ R V D V V+G +E A +
Sbjct: 113 KL----GIPGEDEFWGRGVSYCATCDG-----PFFKNKEVAVVGGGDSAIEEALYLTRIA 163
Query: 1229 KSVTVVGRG----AVPF-QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTA 1283
K VT+V R A + L K +I L+ S + V V V
Sbjct: 164 KKVTLVHRRDKFRAEKILLDRLKKN--PKIEFLWNSTVKEIVGDNKVEG--------VKI 213
Query: 1284 ANLDNG--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGD 1341
N G + D V + IG NT L G +EL+ +V +E + T+VPGV+A GD
Sbjct: 214 KNTVTGEEEELEVDGVFIAIGHEPNTELLKGL-LELDENGYIVTDEGMRTSVPGVFAAGD 272
Query: 1342 I 1342
+
Sbjct: 273 V 273
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070) [Energy metabolism, Electron transport]. Length = 299 |
| >gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 1e-07
Identities = 69/318 (21%), Positives = 116/318 (36%), Gaps = 77/318 (24%)
Query: 48 VVGGGPSGATCVETLRQNGFT-----------GKLYFITDENFLPYD----RVKLSKQLD 92
V+G GP+G C L + G + G + + E LP + +K K+L
Sbjct: 138 VIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLG 197
Query: 93 IKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGS-SP 151
+ F + ++ GK + EL + + +++ TG+ P
Sbjct: 198 VT----------FRMN---FLV-GKTATLE-ELFSQ-----------YDAVFIGTGAGLP 231
Query: 152 RTIS----QADGV---NKVFYLRTVEDANNIAPHITP---ESNVVVIGSSFIGMEAAAFC 201
+ ++ + GV N + A TP +VVVIG +++A
Sbjct: 232 KLMNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTA 291
Query: 202 ASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAA 261
V + R +E + V E E +GVKF +E+ +V A
Sbjct: 292 LRLGAEVHCLYRRT---REDMTARVEE--IAHAEEEGVKFHFLCQPVEIIGDEEGNVRAV 346
Query: 262 NL--------------------DNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVV 301
D + AD VIV IG N + ++ + + +V
Sbjct: 347 KFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRLKTSERGTIV 406
Query: 302 VNEYLETNVPGVYAGGDI 319
V+E T++PGV+AGGDI
Sbjct: 407 VDEDQRTSIPGVFAGGDI 424
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH [Amino acid biosynthesis, Glutamate family]. Length = 449 |
| >gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 1e-07
Identities = 69/318 (21%), Positives = 116/318 (36%), Gaps = 77/318 (24%)
Query: 600 VVGGGPSGATCVETLRQNGFT-----------GKLYFITDENFLPYD----RVKLSKQLD 644
V+G GP+G C L + G + G + + E LP + +K K+L
Sbjct: 138 VIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLG 197
Query: 645 IKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGS-SP 703
+ F + ++ GK + EL + + +++ TG+ P
Sbjct: 198 VT----------FRMN---FLV-GKTATLE-ELFSQ-----------YDAVFIGTGAGLP 231
Query: 704 RTIS----QADGV---NKVFYLRTVEDANNIAPHITP---ESNVVVIGSSFIGMEAAAFC 753
+ ++ + GV N + A TP +VVVIG +++A
Sbjct: 232 KLMNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTA 291
Query: 754 ASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAA 813
V + R +E + V E E +GVKF +E+ +V A
Sbjct: 292 LRLGAEVHCLYRRT---REDMTARVEE--IAHAEEEGVKFHFLCQPVEIIGDEEGNVRAV 346
Query: 814 NL--------------------DNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVV 853
D + AD VIV IG N + ++ + + +V
Sbjct: 347 KFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRLKTSERGTIV 406
Query: 854 VNEYLETNVPGVYAGGDI 871
V+E T++PGV+AGGDI
Sbjct: 407 VDEDQRTSIPGVFAGGDI 424
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH [Amino acid biosynthesis, Glutamate family]. Length = 449 |
| >gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 1e-07
Identities = 69/318 (21%), Positives = 116/318 (36%), Gaps = 77/318 (24%)
Query: 1071 VVGGGPSGATCVETLRQNGFT-----------GKLYFITDENFLPYD----RVKLSKQLD 1115
V+G GP+G C L + G + G + + E LP + +K K+L
Sbjct: 138 VIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLG 197
Query: 1116 IKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGS-SP 1174
+ F + ++ GK + EL + + +++ TG+ P
Sbjct: 198 VT----------FRMN---FLV-GKTATLE-ELFSQ-----------YDAVFIGTGAGLP 231
Query: 1175 RTIS----QADGV---NKVFYLRTVEDANNIAPHITP---ESNVVVIGSSFIGMEAAAFC 1224
+ ++ + GV N + A TP +VVVIG +++A
Sbjct: 232 KLMNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTA 291
Query: 1225 ASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAA 1284
V + R +E + V E E +GVKF +E+ +V A
Sbjct: 292 LRLGAEVHCLYRRT---REDMTARVEE--IAHAEEEGVKFHFLCQPVEIIGDEEGNVRAV 346
Query: 1285 NL--------------------DNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVV 1324
D + AD VIV IG N + ++ + + +V
Sbjct: 347 KFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRLKTSERGTIV 406
Query: 1325 VNEYLETNVPGVYAGGDI 1342
V+E T++PGV+AGGDI
Sbjct: 407 VDEDQRTSIPGVFAGGDI 424
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH [Amino acid biosynthesis, Glutamate family]. Length = 449 |
| >gnl|CDD|234119 TIGR03140, AhpF, alkyl hydroperoxide reductase subunit F | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 2e-07
Identities = 80/309 (25%), Positives = 125/309 (40%), Gaps = 66/309 (21%)
Query: 47 IVVGGGPSG-ATCVETLRQNGFTGKLYFITD------------ENFL--PYDR-VKLSKQ 90
+VVGGGP+G A + R+ T + + EN + PY +L+
Sbjct: 216 LVVGGGPAGAAAAIYAARKGLRTA---MVAERIGGQVKDTVGIENLISVPYTTGSQLAAN 272
Query: 91 LDIKADSILLRTEEFYKDNDIHVIKG---KKIISDSELNEKKIKLQDGTSIDFTKIYLAT 147
L EE K I +++ KKI ++ L + L+ G + + +AT
Sbjct: 273 L-----------EEHIKQYPIDLMENQRAKKIETEDGL--IVVTLESGEVLKAKSVIVAT 319
Query: 148 GSSPRTIS---QADGVNK-VFYLRTVEDANNIAPH----ITPESNVVVIGSSFIGMEAAA 199
G+ R + + + + K V Y PH +V VIG G+EAA
Sbjct: 320 GARWRKLGVPGEKEYIGKGVAY----------CPHCDGPFFKGKDVAVIGGGNSGIEAAI 369
Query: 200 FCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVT 259
A V+ VTV+ F + L K KL V + A + + + VT
Sbjct: 370 DLAGIVRHVTVL-----EFADEL-KADKVLQDKLKSLPNVDILTSAQTTEI-VGDGDKVT 422
Query: 260 AANLDNGTT-----IPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVY 314
+ + + D V V IG V NT +L VELN + +V++E T+VPG++
Sbjct: 423 GIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDA-VELNRRGEIVIDERGRTSVPGIF 481
Query: 315 AGGDIAYAP 323
A GD+ P
Sbjct: 482 AAGDVTTVP 490
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions]. Length = 515 |
| >gnl|CDD|234119 TIGR03140, AhpF, alkyl hydroperoxide reductase subunit F | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 2e-07
Identities = 80/309 (25%), Positives = 125/309 (40%), Gaps = 66/309 (21%)
Query: 599 IVVGGGPSG-ATCVETLRQNGFTGKLYFITD------------ENFL--PYDR-VKLSKQ 642
+VVGGGP+G A + R+ T + + EN + PY +L+
Sbjct: 216 LVVGGGPAGAAAAIYAARKGLRTA---MVAERIGGQVKDTVGIENLISVPYTTGSQLAAN 272
Query: 643 LDIKADSILLRTEEFYKDNDIHVIKG---KKIISDSELNEKKIKLQDGTSIDFTKIYLAT 699
L EE K I +++ KKI ++ L + L+ G + + +AT
Sbjct: 273 L-----------EEHIKQYPIDLMENQRAKKIETEDGL--IVVTLESGEVLKAKSVIVAT 319
Query: 700 GSSPRTIS---QADGVNK-VFYLRTVEDANNIAPH----ITPESNVVVIGSSFIGMEAAA 751
G+ R + + + + K V Y PH +V VIG G+EAA
Sbjct: 320 GARWRKLGVPGEKEYIGKGVAY----------CPHCDGPFFKGKDVAVIGGGNSGIEAAI 369
Query: 752 FCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVT 811
A V+ VTV+ F + L K KL V + A + + + VT
Sbjct: 370 DLAGIVRHVTVL-----EFADEL-KADKVLQDKLKSLPNVDILTSAQTTEI-VGDGDKVT 422
Query: 812 AANLDNGTT-----IPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVY 866
+ + + D V V IG V NT +L VELN + +V++E T+VPG++
Sbjct: 423 GIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDA-VELNRRGEIVIDERGRTSVPGIF 481
Query: 867 AGGDIAYAP 875
A GD+ P
Sbjct: 482 AAGDVTTVP 490
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions]. Length = 515 |
| >gnl|CDD|234119 TIGR03140, AhpF, alkyl hydroperoxide reductase subunit F | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 2e-07
Identities = 80/309 (25%), Positives = 125/309 (40%), Gaps = 66/309 (21%)
Query: 1070 IVVGGGPSG-ATCVETLRQNGFTGKLYFITD------------ENFL--PYDR-VKLSKQ 1113
+VVGGGP+G A + R+ T + + EN + PY +L+
Sbjct: 216 LVVGGGPAGAAAAIYAARKGLRTA---MVAERIGGQVKDTVGIENLISVPYTTGSQLAAN 272
Query: 1114 LDIKADSILLRTEEFYKDNDIHVIKG---KKIISDSELNEKKIKLQDGTSIDFTKIYLAT 1170
L EE K I +++ KKI ++ L + L+ G + + +AT
Sbjct: 273 L-----------EEHIKQYPIDLMENQRAKKIETEDGL--IVVTLESGEVLKAKSVIVAT 319
Query: 1171 GSSPRTIS---QADGVNK-VFYLRTVEDANNIAPH----ITPESNVVVIGSSFIGMEAAA 1222
G+ R + + + + K V Y PH +V VIG G+EAA
Sbjct: 320 GARWRKLGVPGEKEYIGKGVAY----------CPHCDGPFFKGKDVAVIGGGNSGIEAAI 369
Query: 1223 FCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVT 1282
A V+ VTV+ F + L K KL V + A + + + VT
Sbjct: 370 DLAGIVRHVTVL-----EFADEL-KADKVLQDKLKSLPNVDILTSAQTTEI-VGDGDKVT 422
Query: 1283 AANLDNGTT-----IPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVY 1337
+ + + D V V IG V NT +L VELN + +V++E T+VPG++
Sbjct: 423 GIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDA-VELNRRGEIVIDERGRTSVPGIF 481
Query: 1338 AGGDIAYAP 1346
A GD+ P
Sbjct: 482 AAGDVTTVP 490
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions]. Length = 515 |
| >gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (133), Expect = 2e-07
Identities = 60/298 (20%), Positives = 110/298 (36%), Gaps = 56/298 (18%)
Query: 54 SGATCVETLRQNGFTGKLYFITDENF-LPYDRVKLSKQLDIKADSILLRTEEFYKDN--- 109
+ A+ + L + G F T +F LP L + D + R + Y+ N
Sbjct: 99 NAASIHDILENSRHYG---FDTQFSFNLPL--------LVERRDKYIRRLNDIYRQNLKK 147
Query: 110 -DIHVIKGK-KIISDSELNEKKIK-----------------------LQDGTSIDFTKIY 144
++ +GK ++S++++ KK+ L DG I+ I
Sbjct: 148 DNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEGKNIL 207
Query: 145 LATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASK 204
+A G+ P G +++ + + + GS +I +E
Sbjct: 208 IAVGNKPIF-PDVKGKEFTI------SSDDFFKIKEAKR-IGIAGSGYIAVELINVVNRL 259
Query: 205 VKSVTVVGRGAV---PFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAA 261
+ RG F E++ E+ + K + + ANV EK ++ ++T
Sbjct: 260 GAESYIFARGNRLLRKFDETIINELENDMKK----NNINIITHANVEEIEKVKEKNLTIY 315
Query: 262 NLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKA-VVVNEYLETNVPGVYAGGD 318
D D VI +G NT L+ K + + K + V++ T+V +YA GD
Sbjct: 316 LSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIKTPKGYIKVDDNQRTSVKHIYAVGD 373
|
Length = 561 |
| >gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (133), Expect = 2e-07
Identities = 60/298 (20%), Positives = 110/298 (36%), Gaps = 56/298 (18%)
Query: 606 SGATCVETLRQNGFTGKLYFITDENF-LPYDRVKLSKQLDIKADSILLRTEEFYKDN--- 661
+ A+ + L + G F T +F LP L + D + R + Y+ N
Sbjct: 99 NAASIHDILENSRHYG---FDTQFSFNLPL--------LVERRDKYIRRLNDIYRQNLKK 147
Query: 662 -DIHVIKGK-KIISDSELNEKKIK-----------------------LQDGTSIDFTKIY 696
++ +GK ++S++++ KK+ L DG I+ I
Sbjct: 148 DNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEGKNIL 207
Query: 697 LATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASK 756
+A G+ P G +++ + + + GS +I +E
Sbjct: 208 IAVGNKPIF-PDVKGKEFTI------SSDDFFKIKEAKR-IGIAGSGYIAVELINVVNRL 259
Query: 757 VKSVTVVGRGAV---PFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAA 813
+ RG F E++ E+ + K + + ANV EK ++ ++T
Sbjct: 260 GAESYIFARGNRLLRKFDETIINELENDMKK----NNINIITHANVEEIEKVKEKNLTIY 315
Query: 814 NLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKA-VVVNEYLETNVPGVYAGGD 870
D D VI +G NT L+ K + + K + V++ T+V +YA GD
Sbjct: 316 LSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIKTPKGYIKVDDNQRTSVKHIYAVGD 373
|
Length = 561 |
| >gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (133), Expect = 2e-07
Identities = 60/298 (20%), Positives = 110/298 (36%), Gaps = 56/298 (18%)
Query: 1077 SGATCVETLRQNGFTGKLYFITDENF-LPYDRVKLSKQLDIKADSILLRTEEFYKDN--- 1132
+ A+ + L + G F T +F LP L + D + R + Y+ N
Sbjct: 99 NAASIHDILENSRHYG---FDTQFSFNLPL--------LVERRDKYIRRLNDIYRQNLKK 147
Query: 1133 -DIHVIKGK-KIISDSELNEKKIK-----------------------LQDGTSIDFTKIY 1167
++ +GK ++S++++ KK+ L DG I+ I
Sbjct: 148 DNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEGKNIL 207
Query: 1168 LATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASK 1227
+A G+ P G +++ + + + GS +I +E
Sbjct: 208 IAVGNKPIF-PDVKGKEFTI------SSDDFFKIKEAKR-IGIAGSGYIAVELINVVNRL 259
Query: 1228 VKSVTVVGRGAV---PFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAA 1284
+ RG F E++ E+ + K + + ANV EK ++ ++T
Sbjct: 260 GAESYIFARGNRLLRKFDETIINELENDMKK----NNINIITHANVEEIEKVKEKNLTIY 315
Query: 1285 NLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKA-VVVNEYLETNVPGVYAGGD 1341
D D VI +G NT L+ K + + K + V++ T+V +YA GD
Sbjct: 316 LSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIKTPKGYIKVDDNQRTSVKHIYAVGD 373
|
Length = 561 |
| >gnl|CDD|180409 PRK06115, PRK06115, dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 3e-07
Identities = 64/261 (24%), Positives = 112/261 (42%), Gaps = 45/261 (17%)
Query: 87 LSKQLDIKADSI--LLRTEEF-YKDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFT 141
L++ + K +S+ L + EF ++ N + IKG + + +K +DG T ++
Sbjct: 81 LAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDGV--GKVVVKAEDGSETQLEAK 138
Query: 142 KIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFC 201
I +ATGS P + N+ R ++ ++ P+ +VVIG+ IG+E +
Sbjct: 139 DIVIATGSEPTPLPGVTIDNQ----RIIDSTGALSLPEVPKH-LVVIGAGVIGLELGSVW 193
Query: 202 ASKVKSVTVV-----------GRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSF 250
VTVV A Q++L K+ G+KF + + V+
Sbjct: 194 RRLGAQVTVVEYLDRICPGTDTETAKTLQKALTKQ------------GMKFKLGSKVTGA 241
Query: 251 EKNEKN---DVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNG----QKAVVVN 303
+ A T+ AD V+V IG Y G G+E G ++ ++ N
Sbjct: 242 TAGADGVSLTLEPAAGGAAETLQADYVLVAIG---RRPYTQGLGLETVGLETDKRGMLAN 298
Query: 304 EYLETNVPGVYAGGDIAYAPL 324
++ T+VPGV+ GD+ P+
Sbjct: 299 DHHRTSVPGVWVIGDVTSGPM 319
|
Length = 466 |
| >gnl|CDD|180409 PRK06115, PRK06115, dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 3e-07
Identities = 64/261 (24%), Positives = 112/261 (42%), Gaps = 45/261 (17%)
Query: 639 LSKQLDIKADSI--LLRTEEF-YKDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFT 693
L++ + K +S+ L + EF ++ N + IKG + + +K +DG T ++
Sbjct: 81 LAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDGV--GKVVVKAEDGSETQLEAK 138
Query: 694 KIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFC 753
I +ATGS P + N+ R ++ ++ P+ +VVIG+ IG+E +
Sbjct: 139 DIVIATGSEPTPLPGVTIDNQ----RIIDSTGALSLPEVPKH-LVVIGAGVIGLELGSVW 193
Query: 754 ASKVKSVTVV-----------GRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSF 802
VTVV A Q++L K+ G+KF + + V+
Sbjct: 194 RRLGAQVTVVEYLDRICPGTDTETAKTLQKALTKQ------------GMKFKLGSKVTGA 241
Query: 803 EKNEKN---DVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNG----QKAVVVN 855
+ A T+ AD V+V IG Y G G+E G ++ ++ N
Sbjct: 242 TAGADGVSLTLEPAAGGAAETLQADYVLVAIG---RRPYTQGLGLETVGLETDKRGMLAN 298
Query: 856 EYLETNVPGVYAGGDIAYAPL 876
++ T+VPGV+ GD+ P+
Sbjct: 299 DHHRTSVPGVWVIGDVTSGPM 319
|
Length = 466 |
| >gnl|CDD|180409 PRK06115, PRK06115, dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 3e-07
Identities = 64/261 (24%), Positives = 112/261 (42%), Gaps = 45/261 (17%)
Query: 1110 LSKQLDIKADSI--LLRTEEF-YKDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFT 1164
L++ + K +S+ L + EF ++ N + IKG + + +K +DG T ++
Sbjct: 81 LAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDGV--GKVVVKAEDGSETQLEAK 138
Query: 1165 KIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFC 1224
I +ATGS P + N+ R ++ ++ P+ +VVIG+ IG+E +
Sbjct: 139 DIVIATGSEPTPLPGVTIDNQ----RIIDSTGALSLPEVPKH-LVVIGAGVIGLELGSVW 193
Query: 1225 ASKVKSVTVV-----------GRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSF 1273
VTVV A Q++L K+ G+KF + + V+
Sbjct: 194 RRLGAQVTVVEYLDRICPGTDTETAKTLQKALTKQ------------GMKFKLGSKVTGA 241
Query: 1274 EKNEKN---DVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNG----QKAVVVN 1326
+ A T+ AD V+V IG Y G G+E G ++ ++ N
Sbjct: 242 TAGADGVSLTLEPAAGGAAETLQADYVLVAIG---RRPYTQGLGLETVGLETDKRGMLAN 298
Query: 1327 EYLETNVPGVYAGGDIAYAPL 1347
++ T+VPGV+ GD+ P+
Sbjct: 299 DHHRTSVPGVWVIGDVTSGPM 319
|
Length = 466 |
| >gnl|CDD|233412 TIGR01438, TGR, thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 3e-07
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 10/141 (7%)
Query: 186 VVIGSSFIGMEAAAFCASKVKSVTVVGRGAV--PFQESLGKEVGERITKLFESKGVKFVM 243
+V+G+S++ +E A F A VTV+ R + F + +VGE + E GVKF
Sbjct: 184 LVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDCANKVGEHM----EEHGVKFKR 239
Query: 244 KANVSSFEKNE-KNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKA- 299
+ E+ E K V + NG D V++ IG T L+ GV++N +
Sbjct: 240 QFVPIKVEQIEAKVLVEFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGK 299
Query: 300 VVVNEYLETNVPGVYAGGDIA 320
+ +E +TNVP +YA GDI
Sbjct: 300 IPADEEEQTNVPYIYAVGDIL 320
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. Length = 484 |
| >gnl|CDD|233412 TIGR01438, TGR, thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 3e-07
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 10/141 (7%)
Query: 738 VVIGSSFIGMEAAAFCASKVKSVTVVGRGAV--PFQESLGKEVGERITKLFESKGVKFVM 795
+V+G+S++ +E A F A VTV+ R + F + +VGE + E GVKF
Sbjct: 184 LVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDCANKVGEHM----EEHGVKFKR 239
Query: 796 KANVSSFEKNE-KNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKA- 851
+ E+ E K V + NG D V++ IG T L+ GV++N +
Sbjct: 240 QFVPIKVEQIEAKVLVEFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGK 299
Query: 852 VVVNEYLETNVPGVYAGGDIA 872
+ +E +TNVP +YA GDI
Sbjct: 300 IPADEEEQTNVPYIYAVGDIL 320
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. Length = 484 |
| >gnl|CDD|233412 TIGR01438, TGR, thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 3e-07
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 10/141 (7%)
Query: 1209 VVIGSSFIGMEAAAFCASKVKSVTVVGRGAV--PFQESLGKEVGERITKLFESKGVKFVM 1266
+V+G+S++ +E A F A VTV+ R + F + +VGE + E GVKF
Sbjct: 184 LVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDCANKVGEHM----EEHGVKFKR 239
Query: 1267 KANVSSFEKNE-KNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKA- 1322
+ E+ E K V + NG D V++ IG T L+ GV++N +
Sbjct: 240 QFVPIKVEQIEAKVLVEFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGK 299
Query: 1323 VVVNEYLETNVPGVYAGGDIA 1343
+ +E +TNVP +YA GDI
Sbjct: 300 IPADEEEQTNVPYIYAVGDIL 320
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. Length = 484 |
| >gnl|CDD|132187 TIGR03143, AhpF_homolog, putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 3e-07
Identities = 46/148 (31%), Positives = 64/148 (43%), Gaps = 24/148 (16%)
Query: 185 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERI-----------TKL 233
V VIG F E A F VTV+ R + K + E++ T+L
Sbjct: 146 VFVIGGGFAAAEEAVFLTRYASKVTVIVREP---DFTCAKLIAEKVKNHPKIEVKFNTEL 202
Query: 234 FESKGVKFVMKANVSSFEKNEKNDVTA--ANLDNGTTIPADLVIVGIGTVLNTNYLDGKG 291
E+ G + A F N ++T A D GT V V +G ++ G
Sbjct: 203 KEATGDDGLRYA---KFVNNVTGEITEYKAPKDAGTF----GVFVFVGYAPSSELFKGV- 254
Query: 292 VELNGQKAVVVNEYLETNVPGVYAGGDI 319
VEL+ + + NE +ETNVPGVYA GD+
Sbjct: 255 VELDKRGYIPTNEDMETNVPGVYAAGDL 282
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). Length = 555 |
| >gnl|CDD|132187 TIGR03143, AhpF_homolog, putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 3e-07
Identities = 46/148 (31%), Positives = 64/148 (43%), Gaps = 24/148 (16%)
Query: 737 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERI-----------TKL 785
V VIG F E A F VTV+ R + K + E++ T+L
Sbjct: 146 VFVIGGGFAAAEEAVFLTRYASKVTVIVREP---DFTCAKLIAEKVKNHPKIEVKFNTEL 202
Query: 786 FESKGVKFVMKANVSSFEKNEKNDVTA--ANLDNGTTIPADLVIVGIGTVLNTNYLDGKG 843
E+ G + A F N ++T A D GT V V +G ++ G
Sbjct: 203 KEATGDDGLRYA---KFVNNVTGEITEYKAPKDAGTF----GVFVFVGYAPSSELFKGV- 254
Query: 844 VELNGQKAVVVNEYLETNVPGVYAGGDI 871
VEL+ + + NE +ETNVPGVYA GD+
Sbjct: 255 VELDKRGYIPTNEDMETNVPGVYAAGDL 282
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). Length = 555 |
| >gnl|CDD|132187 TIGR03143, AhpF_homolog, putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 3e-07
Identities = 46/148 (31%), Positives = 64/148 (43%), Gaps = 24/148 (16%)
Query: 1208 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERI-----------TKL 1256
V VIG F E A F VTV+ R + K + E++ T+L
Sbjct: 146 VFVIGGGFAAAEEAVFLTRYASKVTVIVREP---DFTCAKLIAEKVKNHPKIEVKFNTEL 202
Query: 1257 FESKGVKFVMKANVSSFEKNEKNDVTA--ANLDNGTTIPADLVIVGIGTVLNTNYLDGKG 1314
E+ G + A F N ++T A D GT V V +G ++ G
Sbjct: 203 KEATGDDGLRYA---KFVNNVTGEITEYKAPKDAGTF----GVFVFVGYAPSSELFKGV- 254
Query: 1315 VELNGQKAVVVNEYLETNVPGVYAGGDI 1342
VEL+ + + NE +ETNVPGVYA GD+
Sbjct: 255 VELDKRGYIPTNEDMETNVPGVYAAGDL 282
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). Length = 555 |
| >gnl|CDD|170182 PRK09965, PRK09965, 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 4e-07
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 508 YAVGTKCSHYGAPLVKGSL-GDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQND 566
YA+ +CSH A L +G L D V CP H A F + TG P D L Y V ++
Sbjct: 36 YAIDDRCSHGNASLSEGYLEDDATVECPLHAASFCLRTGKALCLPATDPLRTYPVHVEGG 95
Query: 567 DSVV 570
D +
Sbjct: 96 DIFI 99
|
Length = 106 |
| >gnl|CDD|181196 PRK08010, PRK08010, pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 8e-07
Identities = 32/133 (24%), Positives = 65/133 (48%), Gaps = 2/133 (1%)
Query: 187 VIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKAN 246
++G +IG+E A+ A+ VT++ A F +++ + I + +GV ++ A+
Sbjct: 163 ILGGGYIGVEFASMFANFGSKVTIL-EAASLFLPREDRDIADNIATILRDQGVDIILNAH 221
Query: 247 VSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYL 306
V +E N V + + A L+ G + + + G+ +N + A+VV++YL
Sbjct: 222 VERISHHE-NQVQVHSEHAQLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYL 280
Query: 307 ETNVPGVYAGGDI 319
T ++A GD+
Sbjct: 281 HTTADNIWAMGDV 293
|
Length = 441 |
| >gnl|CDD|181196 PRK08010, PRK08010, pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 8e-07
Identities = 32/133 (24%), Positives = 65/133 (48%), Gaps = 2/133 (1%)
Query: 739 VIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKAN 798
++G +IG+E A+ A+ VT++ A F +++ + I + +GV ++ A+
Sbjct: 163 ILGGGYIGVEFASMFANFGSKVTIL-EAASLFLPREDRDIADNIATILRDQGVDIILNAH 221
Query: 799 VSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYL 858
V +E N V + + A L+ G + + + G+ +N + A+VV++YL
Sbjct: 222 VERISHHE-NQVQVHSEHAQLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYL 280
Query: 859 ETNVPGVYAGGDI 871
T ++A GD+
Sbjct: 281 HTTADNIWAMGDV 293
|
Length = 441 |
| >gnl|CDD|181196 PRK08010, PRK08010, pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 8e-07
Identities = 32/133 (24%), Positives = 65/133 (48%), Gaps = 2/133 (1%)
Query: 1210 VIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKAN 1269
++G +IG+E A+ A+ VT++ A F +++ + I + +GV ++ A+
Sbjct: 163 ILGGGYIGVEFASMFANFGSKVTIL-EAASLFLPREDRDIADNIATILRDQGVDIILNAH 221
Query: 1270 VSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYL 1329
V +E N V + + A L+ G + + + G+ +N + A+VV++YL
Sbjct: 222 VERISHHE-NQVQVHSEHAQLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYL 280
Query: 1330 ETNVPGVYAGGDI 1342
T ++A GD+
Sbjct: 281 HTTADNIWAMGDV 293
|
Length = 441 |
| >gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 9e-07
Identities = 42/212 (19%), Positives = 79/212 (37%), Gaps = 23/212 (10%)
Query: 124 ELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-KVF-------YLRTVEDANNI 175
+ + +K+ L + + + + L GS+ +S +G +L E
Sbjct: 80 DPDRRKVLLANRPPLSYDVLSLDVGSTT-PLSGVEGAADLAVPVKPIENFLARWEALLES 138
Query: 176 APHITPESNVVVIGSSFIGMEAA-----AFCASKVKSVTVVGRGAVPFQESLGKEVGERI 230
A + V+G G+E A ++ + GA K V +
Sbjct: 139 ADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAGASLLPGFPAK-VRRLV 197
Query: 231 TKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGK 290
+L +G++ A V+ A L +G T+PAD ++ G +L
Sbjct: 198 LRLLARRGIEVHEGAPVTRGPDG------ALILADGRTLPADAILWATGAR-APPWLAES 250
Query: 291 GVELNGQKAVVVNEYLET-NVPGVYAGGDIAY 321
G+ L+ + V+ L++ + P V+A GD A
Sbjct: 251 GLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAV 282
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. Length = 364 |
| >gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 9e-07
Identities = 42/212 (19%), Positives = 79/212 (37%), Gaps = 23/212 (10%)
Query: 676 ELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-KVF-------YLRTVEDANNI 727
+ + +K+ L + + + + L GS+ +S +G +L E
Sbjct: 80 DPDRRKVLLANRPPLSYDVLSLDVGSTT-PLSGVEGAADLAVPVKPIENFLARWEALLES 138
Query: 728 APHITPESNVVVIGSSFIGMEAA-----AFCASKVKSVTVVGRGAVPFQESLGKEVGERI 782
A + V+G G+E A ++ + GA K V +
Sbjct: 139 ADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAGASLLPGFPAK-VRRLV 197
Query: 783 TKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGK 842
+L +G++ A V+ A L +G T+PAD ++ G +L
Sbjct: 198 LRLLARRGIEVHEGAPVTRGPDG------ALILADGRTLPADAILWATGAR-APPWLAES 250
Query: 843 GVELNGQKAVVVNEYLET-NVPGVYAGGDIAY 873
G+ L+ + V+ L++ + P V+A GD A
Sbjct: 251 GLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAV 282
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. Length = 364 |
| >gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 9e-07
Identities = 42/212 (19%), Positives = 79/212 (37%), Gaps = 23/212 (10%)
Query: 1147 ELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-KVF-------YLRTVEDANNI 1198
+ + +K+ L + + + + L GS+ +S +G +L E
Sbjct: 80 DPDRRKVLLANRPPLSYDVLSLDVGSTT-PLSGVEGAADLAVPVKPIENFLARWEALLES 138
Query: 1199 APHITPESNVVVIGSSFIGMEAA-----AFCASKVKSVTVVGRGAVPFQESLGKEVGERI 1253
A + V+G G+E A ++ + GA K V +
Sbjct: 139 ADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAGASLLPGFPAK-VRRLV 197
Query: 1254 TKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGK 1313
+L +G++ A V+ A L +G T+PAD ++ G +L
Sbjct: 198 LRLLARRGIEVHEGAPVTRGPDG------ALILADGRTLPADAILWATGAR-APPWLAES 250
Query: 1314 GVELNGQKAVVVNEYLET-NVPGVYAGGDIAY 1344
G+ L+ + V+ L++ + P V+A GD A
Sbjct: 251 GLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAV 282
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. Length = 364 |
| >gnl|CDD|188533 TIGR04018, Bthiol_YpdA, putative bacillithiol system oxidoreductase, YpdA family | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 3e-06
Identities = 45/146 (30%), Positives = 65/146 (44%), Gaps = 17/146 (11%)
Query: 184 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFES---KG-V 239
VVV+G S ++AA K VT+V RG + + V + E+ +G +
Sbjct: 154 KVVVVGGSNSAVDAALELYRKGAEVTMVHRG-----DEVSSSVKYWVRPDIENRIKEGSI 208
Query: 240 KFVMKANVSSFEKNEKNDVTAANLDNGT--TIPADLVIVGIGTVLNTNYLDGKGVELNGQ 297
K + V ++ VT D G TIP D V G + +L+ GVEL+
Sbjct: 209 KAYFNSRVKEITEDS---VTLETPD-GEVHTIPNDFVFALTGYRPDFEFLESLGVELDED 264
Query: 298 KAVVV--NEYLETNVPGVYAGGDIAY 321
+ V E +ETNVPG+Y G IA
Sbjct: 265 TGIPVYNPETMETNVPGLYLAGVIAA 290
|
Members of this protein family, including YpdA from Bacillus subtilis, are apparent oxidoreductases present only in species with an active bacillithiol system. They have been suggested actually to be thiol disulfide oxidoreductases (TDOR), although the evidence is incomplete [Unknown function, Enzymes of unknown specificity]. Length = 316 |
| >gnl|CDD|188533 TIGR04018, Bthiol_YpdA, putative bacillithiol system oxidoreductase, YpdA family | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 3e-06
Identities = 45/146 (30%), Positives = 65/146 (44%), Gaps = 17/146 (11%)
Query: 736 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFES---KG-V 791
VVV+G S ++AA K VT+V RG + + V + E+ +G +
Sbjct: 154 KVVVVGGSNSAVDAALELYRKGAEVTMVHRG-----DEVSSSVKYWVRPDIENRIKEGSI 208
Query: 792 KFVMKANVSSFEKNEKNDVTAANLDNGT--TIPADLVIVGIGTVLNTNYLDGKGVELNGQ 849
K + V ++ VT D G TIP D V G + +L+ GVEL+
Sbjct: 209 KAYFNSRVKEITEDS---VTLETPD-GEVHTIPNDFVFALTGYRPDFEFLESLGVELDED 264
Query: 850 KAVVV--NEYLETNVPGVYAGGDIAY 873
+ V E +ETNVPG+Y G IA
Sbjct: 265 TGIPVYNPETMETNVPGLYLAGVIAA 290
|
Members of this protein family, including YpdA from Bacillus subtilis, are apparent oxidoreductases present only in species with an active bacillithiol system. They have been suggested actually to be thiol disulfide oxidoreductases (TDOR), although the evidence is incomplete [Unknown function, Enzymes of unknown specificity]. Length = 316 |
| >gnl|CDD|188533 TIGR04018, Bthiol_YpdA, putative bacillithiol system oxidoreductase, YpdA family | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 3e-06
Identities = 45/146 (30%), Positives = 65/146 (44%), Gaps = 17/146 (11%)
Query: 1207 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFES---KG-V 1262
VVV+G S ++AA K VT+V RG + + V + E+ +G +
Sbjct: 154 KVVVVGGSNSAVDAALELYRKGAEVTMVHRG-----DEVSSSVKYWVRPDIENRIKEGSI 208
Query: 1263 KFVMKANVSSFEKNEKNDVTAANLDNGT--TIPADLVIVGIGTVLNTNYLDGKGVELNGQ 1320
K + V ++ VT D G TIP D V G + +L+ GVEL+
Sbjct: 209 KAYFNSRVKEITEDS---VTLETPD-GEVHTIPNDFVFALTGYRPDFEFLESLGVELDED 264
Query: 1321 KAVVV--NEYLETNVPGVYAGGDIAY 1344
+ V E +ETNVPG+Y G IA
Sbjct: 265 TGIPVYNPETMETNVPGLYLAGVIAA 290
|
Members of this protein family, including YpdA from Bacillus subtilis, are apparent oxidoreductases present only in species with an active bacillithiol system. They have been suggested actually to be thiol disulfide oxidoreductases (TDOR), although the evidence is incomplete [Unknown function, Enzymes of unknown specificity]. Length = 316 |
| >gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 4e-06
Identities = 85/333 (25%), Positives = 128/333 (38%), Gaps = 104/333 (31%)
Query: 48 VVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV-----------KLSKQ-----L 91
VVG GP+G + L + G ++ E DR+ KL K+ +
Sbjct: 148 VVGSGPAGLAAADQLARAGHKVTVF----ER---ADRIGGLLRYGIPDFKLEKEVIDRRI 200
Query: 92 DI-KADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSS 150
++ +A+ I RT ++ V GK I + EL ++ ++L TG+
Sbjct: 201 ELMEAEGIEFRT-------NVEV--GKDI-TAEELLA-----------EYDAVFLGTGAY 239
Query: 151 -PRTIS----QADGV-NKVFYL----RTVEDANNIAPHITPES-NVVVIGSSFIGMEAAA 199
PR + DGV + +L R V + P I+ + +VVVIG GM+
Sbjct: 240 KPRDLGIPGRDLDGVHFAMDFLIQNTRRVLG-DETEPFISAKGKHVVVIGGGDTGMDCVG 298
Query: 200 FCASK---VKSVTVVGRGAVP----------------FQESLGKEVG-ERI----TKLFE 235
+ KSVT +P + S E G ER TK FE
Sbjct: 299 --TAIRQGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFE 356
Query: 236 S-----KGVKFV-MKANVSSFEKNEKNDVTAANLDNGT--TIPADLVIVGIG-TVLNTNY 286
GVK V + FE E G+ +PADLV++ +G T
Sbjct: 357 GENGKVTGVKVVRTELGEGDFEPVE-----------GSEFVLPADLVLLAMGFTGPEAGL 405
Query: 287 LDGKGVELNGQKAVVVNEY-LETNVPGVYAGGD 318
L GVEL+ + V + +T+ P V+A GD
Sbjct: 406 LAQFGVELDERGRVAAPDNAYQTSNPKVFAAGD 438
|
Length = 471 |
| >gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 4e-06
Identities = 85/333 (25%), Positives = 128/333 (38%), Gaps = 104/333 (31%)
Query: 600 VVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV-----------KLSKQ-----L 643
VVG GP+G + L + G ++ E DR+ KL K+ +
Sbjct: 148 VVGSGPAGLAAADQLARAGHKVTVF----ER---ADRIGGLLRYGIPDFKLEKEVIDRRI 200
Query: 644 DI-KADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSS 702
++ +A+ I RT ++ V GK I + EL ++ ++L TG+
Sbjct: 201 ELMEAEGIEFRT-------NVEV--GKDI-TAEELLA-----------EYDAVFLGTGAY 239
Query: 703 -PRTIS----QADGV-NKVFYL----RTVEDANNIAPHITPES-NVVVIGSSFIGMEAAA 751
PR + DGV + +L R V + P I+ + +VVVIG GM+
Sbjct: 240 KPRDLGIPGRDLDGVHFAMDFLIQNTRRVLG-DETEPFISAKGKHVVVIGGGDTGMDCVG 298
Query: 752 FCASK---VKSVTVVGRGAVP----------------FQESLGKEVG-ERI----TKLFE 787
+ KSVT +P + S E G ER TK FE
Sbjct: 299 --TAIRQGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFE 356
Query: 788 S-----KGVKFV-MKANVSSFEKNEKNDVTAANLDNGT--TIPADLVIVGIG-TVLNTNY 838
GVK V + FE E G+ +PADLV++ +G T
Sbjct: 357 GENGKVTGVKVVRTELGEGDFEPVE-----------GSEFVLPADLVLLAMGFTGPEAGL 405
Query: 839 LDGKGVELNGQKAVVVNEY-LETNVPGVYAGGD 870
L GVEL+ + V + +T+ P V+A GD
Sbjct: 406 LAQFGVELDERGRVAAPDNAYQTSNPKVFAAGD 438
|
Length = 471 |
| >gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 4e-06
Identities = 85/333 (25%), Positives = 128/333 (38%), Gaps = 104/333 (31%)
Query: 1071 VVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV-----------KLSKQ-----L 1114
VVG GP+G + L + G ++ E DR+ KL K+ +
Sbjct: 148 VVGSGPAGLAAADQLARAGHKVTVF----ER---ADRIGGLLRYGIPDFKLEKEVIDRRI 200
Query: 1115 DI-KADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSS 1173
++ +A+ I RT ++ V GK I + EL ++ ++L TG+
Sbjct: 201 ELMEAEGIEFRT-------NVEV--GKDI-TAEELLA-----------EYDAVFLGTGAY 239
Query: 1174 -PRTIS----QADGV-NKVFYL----RTVEDANNIAPHITPES-NVVVIGSSFIGMEAAA 1222
PR + DGV + +L R V + P I+ + +VVVIG GM+
Sbjct: 240 KPRDLGIPGRDLDGVHFAMDFLIQNTRRVLG-DETEPFISAKGKHVVVIGGGDTGMDCVG 298
Query: 1223 FCASK---VKSVTVVGRGAVP----------------FQESLGKEVG-ERI----TKLFE 1258
+ KSVT +P + S E G ER TK FE
Sbjct: 299 --TAIRQGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFE 356
Query: 1259 S-----KGVKFV-MKANVSSFEKNEKNDVTAANLDNGT--TIPADLVIVGIG-TVLNTNY 1309
GVK V + FE E G+ +PADLV++ +G T
Sbjct: 357 GENGKVTGVKVVRTELGEGDFEPVE-----------GSEFVLPADLVLLAMGFTGPEAGL 405
Query: 1310 LDGKGVELNGQKAVVVNEY-LETNVPGVYAGGD 1341
L GVEL+ + V + +T+ P V+A GD
Sbjct: 406 LAQFGVELDERGRVAAPDNAYQTSNPKVFAAGD 438
|
Length = 471 |
| >gnl|CDD|180579 PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 5e-06
Identities = 56/229 (24%), Positives = 93/229 (40%), Gaps = 25/229 (10%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQADGVNKVF 164
K + V+ G + N ++ +DG T I+F +A GS P + +
Sbjct: 104 KGRKVTVVNGLGKFTGG--NTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPHDDPRI 161
Query: 165 YLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGR-----GAVPFQ 219
+ T DA + P+ ++V+G IG+E V VV A
Sbjct: 162 WDST--DALELKE--VPK-RLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAA--D 214
Query: 220 ESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPA--DLVIVG 277
+ + K +RI K F +++ V++ E E P D V+V
Sbjct: 215 KDIVKVFTKRIKKQF-----NIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVA 269
Query: 278 IGTVLNTNYLDGK--GVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPL 324
+G V N LD + GVE++ + + V++ TNVP ++A GDI P+
Sbjct: 270 VGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRTNVPHIFAIGDIVGQPM 318
|
Length = 471 |
| >gnl|CDD|180579 PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 5e-06
Identities = 56/229 (24%), Positives = 93/229 (40%), Gaps = 25/229 (10%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQADGVNKVF 716
K + V+ G + N ++ +DG T I+F +A GS P + +
Sbjct: 104 KGRKVTVVNGLGKFTGG--NTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPHDDPRI 161
Query: 717 YLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGR-----GAVPFQ 771
+ T DA + P+ ++V+G IG+E V VV A
Sbjct: 162 WDST--DALELKE--VPK-RLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAA--D 214
Query: 772 ESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPA--DLVIVG 829
+ + K +RI K F +++ V++ E E P D V+V
Sbjct: 215 KDIVKVFTKRIKKQF-----NIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVA 269
Query: 830 IGTVLNTNYLDGK--GVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPL 876
+G V N LD + GVE++ + + V++ TNVP ++A GDI P+
Sbjct: 270 VGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRTNVPHIFAIGDIVGQPM 318
|
Length = 471 |
| >gnl|CDD|180579 PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 5e-06
Identities = 56/229 (24%), Positives = 93/229 (40%), Gaps = 25/229 (10%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQADGVNKVF 1187
K + V+ G + N ++ +DG T I+F +A GS P + +
Sbjct: 104 KGRKVTVVNGLGKFTGG--NTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPHDDPRI 161
Query: 1188 YLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGR-----GAVPFQ 1242
+ T DA + P+ ++V+G IG+E V VV A
Sbjct: 162 WDST--DALELKE--VPK-RLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAA--D 214
Query: 1243 ESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPA--DLVIVG 1300
+ + K +RI K F +++ V++ E E P D V+V
Sbjct: 215 KDIVKVFTKRIKKQF-----NIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVA 269
Query: 1301 IGTVLNTNYLDGK--GVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPL 1347
+G V N LD + GVE++ + + V++ TNVP ++A GDI P+
Sbjct: 270 VGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRTNVPHIFAIGDIVGQPM 318
|
Length = 471 |
| >gnl|CDD|239608 cd03532, Rieske_RO_Alpha_VanA_DdmC, Rieske non-heme iron oxygenase (RO) family, Vanillate-O-demethylase oxygenase (VanA) and dicamba O-demethylase oxygenase (DdmC) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 1e-05
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 509 AVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFN 541
A+ +C H APL KGS+ G + C +HG F+
Sbjct: 41 ALEDRCPHRSAPLSKGSVEGGGLVCGYHGLEFD 73
|
The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Vanillate-O-demethylase is a heterodimeric enzyme consisting of a terminal oxygenase (VanA) and reductase (VanB) components. This enzyme reductively catalyzes the conversion of vanillate into protocatechuate and formaldehyde. Protocatechuate and vanillate are important intermediate metabolites in the degradation pathway of lignin-derived compounds such as ferulic acid and vanillin by soil microbes. DDmC is the oxygenase component of a three-component dicamba O-demethylase found in Pseudomonas maltophila, that catalyzes the conversion of a widely used herbicide called herbicide dicamba (2-methoxy-3,6-dichlorobenzoic acid) to DCSA (3,6-dichlorosalicylic acid). Length = 116 |
| >gnl|CDD|239608 cd03532, Rieske_RO_Alpha_VanA_DdmC, Rieske non-heme iron oxygenase (RO) family, Vanillate-O-demethylase oxygenase (VanA) and dicamba O-demethylase oxygenase (DdmC) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 1e-05
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 980 AVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFN 1012
A+ +C H APL KGS+ G + C +HG F+
Sbjct: 41 ALEDRCPHRSAPLSKGSVEGGGLVCGYHGLEFD 73
|
The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Vanillate-O-demethylase is a heterodimeric enzyme consisting of a terminal oxygenase (VanA) and reductase (VanB) components. This enzyme reductively catalyzes the conversion of vanillate into protocatechuate and formaldehyde. Protocatechuate and vanillate are important intermediate metabolites in the degradation pathway of lignin-derived compounds such as ferulic acid and vanillin by soil microbes. DDmC is the oxygenase component of a three-component dicamba O-demethylase found in Pseudomonas maltophila, that catalyzes the conversion of a widely used herbicide called herbicide dicamba (2-methoxy-3,6-dichlorobenzoic acid) to DCSA (3,6-dichlorosalicylic acid). Length = 116 |
| >gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-05
Identities = 72/341 (21%), Positives = 126/341 (36%), Gaps = 81/341 (23%)
Query: 29 KKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFT-----------GKLYFITDE 77
++ + +++ V+G GP+G TC L + G+ G L + E
Sbjct: 126 RENGIDLSETEEKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPE 185
Query: 78 NFLPYDRVKLSKQLD-IKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGT 136
LP + V + K+++ IK + + T +V+ GK + D L E+
Sbjct: 186 FRLPKETV-VKKEIENIKKLGVKIET---------NVVVGKTVTIDELLEEEG------- 228
Query: 137 SIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDAN------NIAPHITPESN------ 184
F +++ +G+ G N L V AN N+ PE +
Sbjct: 229 ---FDAVFIGSGAGLPKFMGIPGEN----LNGVFSANEFLTRVNLMKAYKPEYDTPIKVG 281
Query: 185 --VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESK--GVK 240
V V+G + M+AA V +V R + +E+ R+ ++ +K GV
Sbjct: 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSE-------EELPARVEEVHHAKEEGVI 334
Query: 241 FVMKANVSSFEKNEKNDVTAANL--------------------DNGTTIPADLVIVGIGT 280
F + N +E V + + D VI+ +GT
Sbjct: 335 FDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGT 394
Query: 281 VLNTNYLDG-KGVELNGQKAVVVNE-YLETNVPGVYAGGDI 319
N KG+++N + +V +E T+ GV+AGGD
Sbjct: 395 SPNPLISSTTKGLKINKRGCIVADEETGLTSKEGVFAGGDA 435
|
Length = 464 |
| >gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-05
Identities = 72/341 (21%), Positives = 126/341 (36%), Gaps = 81/341 (23%)
Query: 581 KKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFT-----------GKLYFITDE 629
++ + +++ V+G GP+G TC L + G+ G L + E
Sbjct: 126 RENGIDLSETEEKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPE 185
Query: 630 NFLPYDRVKLSKQLD-IKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGT 688
LP + V + K+++ IK + + T +V+ GK + D L E+
Sbjct: 186 FRLPKETV-VKKEIENIKKLGVKIET---------NVVVGKTVTIDELLEEEG------- 228
Query: 689 SIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDAN------NIAPHITPESN------ 736
F +++ +G+ G N L V AN N+ PE +
Sbjct: 229 ---FDAVFIGSGAGLPKFMGIPGEN----LNGVFSANEFLTRVNLMKAYKPEYDTPIKVG 281
Query: 737 --VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESK--GVK 792
V V+G + M+AA V +V R + +E+ R+ ++ +K GV
Sbjct: 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSE-------EELPARVEEVHHAKEEGVI 334
Query: 793 FVMKANVSSFEKNEKNDVTAANL--------------------DNGTTIPADLVIVGIGT 832
F + N +E V + + D VI+ +GT
Sbjct: 335 FDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGT 394
Query: 833 VLNTNYLDG-KGVELNGQKAVVVNE-YLETNVPGVYAGGDI 871
N KG+++N + +V +E T+ GV+AGGD
Sbjct: 395 SPNPLISSTTKGLKINKRGCIVADEETGLTSKEGVFAGGDA 435
|
Length = 464 |
| >gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-05
Identities = 72/341 (21%), Positives = 126/341 (36%), Gaps = 81/341 (23%)
Query: 1052 KKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFT-----------GKLYFITDE 1100
++ + +++ V+G GP+G TC L + G+ G L + E
Sbjct: 126 RENGIDLSETEEKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPE 185
Query: 1101 NFLPYDRVKLSKQLD-IKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGT 1159
LP + V + K+++ IK + + T +V+ GK + D L E+
Sbjct: 186 FRLPKETV-VKKEIENIKKLGVKIET---------NVVVGKTVTIDELLEEEG------- 228
Query: 1160 SIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDAN------NIAPHITPESN------ 1207
F +++ +G+ G N L V AN N+ PE +
Sbjct: 229 ---FDAVFIGSGAGLPKFMGIPGEN----LNGVFSANEFLTRVNLMKAYKPEYDTPIKVG 281
Query: 1208 --VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESK--GVK 1263
V V+G + M+AA V +V R + +E+ R+ ++ +K GV
Sbjct: 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSE-------EELPARVEEVHHAKEEGVI 334
Query: 1264 FVMKANVSSFEKNEKNDVTAANL--------------------DNGTTIPADLVIVGIGT 1303
F + N +E V + + D VI+ +GT
Sbjct: 335 FDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGT 394
Query: 1304 VLNTNYLDG-KGVELNGQKAVVVNE-YLETNVPGVYAGGDI 1342
N KG+++N + +V +E T+ GV+AGGD
Sbjct: 395 SPNPLISSTTKGLKINKRGCIVADEETGLTSKEGVFAGGDA 435
|
Length = 464 |
| >gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 2e-05
Identities = 45/181 (24%), Positives = 77/181 (42%), Gaps = 14/181 (7%)
Query: 143 IYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCA 202
I +ATG P G + Y T +D I +++G+S+IG+E A F
Sbjct: 148 ILIATGGRPSIPEDVPGAKE--YSITSDD---IFSLSKDPGKTLIVGASYIGLETAGFLN 202
Query: 203 SKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAAN 262
VTV R ++P + ++ E++ + + +G F V + +D
Sbjct: 203 ELGFDVTVAVR-SIPLR-GFDRQCSEKVVEYMKEQGTLF--LEGVVPINIEKMDDKIKVL 258
Query: 263 LDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELN-GQKAVVVNEYLETNVPGVYAGGDI 319
+GTT D V+ G + L+ GV +N K + N+ TN+P ++A GD+
Sbjct: 259 FSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND--CTNIPNIFAVGDV 316
Query: 320 A 320
Sbjct: 317 V 317
|
Length = 499 |
| >gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 2e-05
Identities = 45/181 (24%), Positives = 77/181 (42%), Gaps = 14/181 (7%)
Query: 695 IYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCA 754
I +ATG P G + Y T +D I +++G+S+IG+E A F
Sbjct: 148 ILIATGGRPSIPEDVPGAKE--YSITSDD---IFSLSKDPGKTLIVGASYIGLETAGFLN 202
Query: 755 SKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAAN 814
VTV R ++P + ++ E++ + + +G F V + +D
Sbjct: 203 ELGFDVTVAVR-SIPLR-GFDRQCSEKVVEYMKEQGTLF--LEGVVPINIEKMDDKIKVL 258
Query: 815 LDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELN-GQKAVVVNEYLETNVPGVYAGGDI 871
+GTT D V+ G + L+ GV +N K + N+ TN+P ++A GD+
Sbjct: 259 FSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND--CTNIPNIFAVGDV 316
Query: 872 A 872
Sbjct: 317 V 317
|
Length = 499 |
| >gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 2e-05
Identities = 45/181 (24%), Positives = 77/181 (42%), Gaps = 14/181 (7%)
Query: 1166 IYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCA 1225
I +ATG P G + Y T +D I +++G+S+IG+E A F
Sbjct: 148 ILIATGGRPSIPEDVPGAKE--YSITSDD---IFSLSKDPGKTLIVGASYIGLETAGFLN 202
Query: 1226 SKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAAN 1285
VTV R ++P + ++ E++ + + +G F V + +D
Sbjct: 203 ELGFDVTVAVR-SIPLR-GFDRQCSEKVVEYMKEQGTLF--LEGVVPINIEKMDDKIKVL 258
Query: 1286 LDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELN-GQKAVVVNEYLETNVPGVYAGGDI 1342
+GTT D V+ G + L+ GV +N K + N+ TN+P ++A GD+
Sbjct: 259 FSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND--CTNIPNIFAVGDV 316
Query: 1343 A 1343
Sbjct: 317 V 317
|
Length = 499 |
| >gnl|CDD|185553 PTZ00318, PTZ00318, NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 3e-05
Identities = 52/219 (23%), Positives = 84/219 (38%), Gaps = 44/219 (20%)
Query: 136 TSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHIT--------PESNV-- 185
S+ + K+ +A G+ P T + + F+L+ V A I I P ++V
Sbjct: 110 FSVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPTTSVEE 169
Query: 186 -------VVIGSSFIGMEAAAFCASKVK--------------SVTVVGRGAVPFQESLGK 224
VV+G G+E AA A + VTV+ G+ S +
Sbjct: 170 RKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLG-SFDQ 228
Query: 225 EVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVI--VGIGTVL 282
+ + + GV K V E +K V +G IP LV+ G+G
Sbjct: 229 ALRKYGQRRLRRLGVDIRTKTAVK--EVLDKEVVL----KDGEVIPTGLVVWSTGVGPGP 282
Query: 283 NTNYLDGKGVELNGQKAVVVNEYLET-NVPGVYAGGDIA 320
T L V+ + + V+++L +P V+A GD A
Sbjct: 283 LTKQLK---VDKTSRGRISVDDHLRVKPIPNVFALGDCA 318
|
Length = 424 |
| >gnl|CDD|185553 PTZ00318, PTZ00318, NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 3e-05
Identities = 52/219 (23%), Positives = 84/219 (38%), Gaps = 44/219 (20%)
Query: 688 TSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHIT--------PESNV-- 737
S+ + K+ +A G+ P T + + F+L+ V A I I P ++V
Sbjct: 110 FSVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPTTSVEE 169
Query: 738 -------VVIGSSFIGMEAAAFCASKVK--------------SVTVVGRGAVPFQESLGK 776
VV+G G+E AA A + VTV+ G+ S +
Sbjct: 170 RKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLG-SFDQ 228
Query: 777 EVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVI--VGIGTVL 834
+ + + GV K V E +K V +G IP LV+ G+G
Sbjct: 229 ALRKYGQRRLRRLGVDIRTKTAVK--EVLDKEVVL----KDGEVIPTGLVVWSTGVGPGP 282
Query: 835 NTNYLDGKGVELNGQKAVVVNEYLET-NVPGVYAGGDIA 872
T L V+ + + V+++L +P V+A GD A
Sbjct: 283 LTKQLK---VDKTSRGRISVDDHLRVKPIPNVFALGDCA 318
|
Length = 424 |
| >gnl|CDD|185553 PTZ00318, PTZ00318, NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 3e-05
Identities = 52/219 (23%), Positives = 84/219 (38%), Gaps = 44/219 (20%)
Query: 1159 TSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHIT--------PESNV-- 1208
S+ + K+ +A G+ P T + + F+L+ V A I I P ++V
Sbjct: 110 FSVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPTTSVEE 169
Query: 1209 -------VVIGSSFIGMEAAAFCASKVK--------------SVTVVGRGAVPFQESLGK 1247
VV+G G+E AA A + VTV+ G+ S +
Sbjct: 170 RKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLG-SFDQ 228
Query: 1248 EVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVI--VGIGTVL 1305
+ + + GV K V E +K V +G IP LV+ G+G
Sbjct: 229 ALRKYGQRRLRRLGVDIRTKTAVK--EVLDKEVVL----KDGEVIPTGLVVWSTGVGPGP 282
Query: 1306 NTNYLDGKGVELNGQKAVVVNEYLET-NVPGVYAGGDIA 1343
T L V+ + + V+++L +P V+A GD A
Sbjct: 283 LTKQLK---VDKTSRGRISVDDHLRVKPIPNVFALGDCA 318
|
Length = 424 |
| >gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 5e-05
Identities = 76/353 (21%), Positives = 126/353 (35%), Gaps = 89/353 (25%)
Query: 48 VVGGGPSGATCVETLRQNG-----------FTGKLYFITDENFLPYDRVKLSKQLDIKAD 96
V+G GP+G + L + G G L + + LP D +
Sbjct: 128 VIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDIL----------- 176
Query: 97 SILLRTEEFYKDNDIHVIK--GKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSS-PRT 153
D + +++ G + + + + I L++ ++ ++LATG+ PR
Sbjct: 177 -----------DRRLELLERSGVEFKLNVRVG-RDITLEE-LLKEYDAVFLATGAGKPRP 223
Query: 154 I----SQADGVNKVF-YLRTV--EDANNIAPHITPES---NVVVIGSSFIGMEAAAFCAS 203
+ A GV +L + E + A TP + VVVIG M+ A +
Sbjct: 224 LDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAG--TA 281
Query: 204 KV---KSVTVVGR-------GAVPFQ--ESLGKEVGER-ITKLFESKGVKFVMKAN---- 246
KSVT R P + + GE + +L + F+
Sbjct: 282 LRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRVT 341
Query: 247 VSSFEKNEKNDVTAANLDNGT--------TIPADLVIVGIGTVLNTNYLDGK--GVELNG 296
F + E + G T AD VI+ IG + G++L+
Sbjct: 342 GVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDK 401
Query: 297 QKAVVVNEYL-ETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAA 348
+ + V+E L +T++PGV+AGGD A + A GR AA
Sbjct: 402 RGRIKVDENLQQTSIPGVFAGGDA--------VRGAALVVW---AIAEGREAA 443
|
Length = 457 |
| >gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 5e-05
Identities = 76/353 (21%), Positives = 126/353 (35%), Gaps = 89/353 (25%)
Query: 600 VVGGGPSGATCVETLRQNG-----------FTGKLYFITDENFLPYDRVKLSKQLDIKAD 648
V+G GP+G + L + G G L + + LP D +
Sbjct: 128 VIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDIL----------- 176
Query: 649 SILLRTEEFYKDNDIHVIK--GKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSS-PRT 705
D + +++ G + + + + I L++ ++ ++LATG+ PR
Sbjct: 177 -----------DRRLELLERSGVEFKLNVRVG-RDITLEE-LLKEYDAVFLATGAGKPRP 223
Query: 706 I----SQADGVNKVF-YLRTV--EDANNIAPHITPES---NVVVIGSSFIGMEAAAFCAS 755
+ A GV +L + E + A TP + VVVIG M+ A +
Sbjct: 224 LDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAG--TA 281
Query: 756 KV---KSVTVVGR-------GAVPFQ--ESLGKEVGER-ITKLFESKGVKFVMKAN---- 798
KSVT R P + + GE + +L + F+
Sbjct: 282 LRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRVT 341
Query: 799 VSSFEKNEKNDVTAANLDNGT--------TIPADLVIVGIGTVLNTNYLDGK--GVELNG 848
F + E + G T AD VI+ IG + G++L+
Sbjct: 342 GVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDK 401
Query: 849 QKAVVVNEYL-ETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAA 900
+ + V+E L +T++PGV+AGGD A + A GR AA
Sbjct: 402 RGRIKVDENLQQTSIPGVFAGGDA--------VRGAALVVW---AIAEGREAA 443
|
Length = 457 |
| >gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 5e-05
Identities = 76/353 (21%), Positives = 126/353 (35%), Gaps = 89/353 (25%)
Query: 1071 VVGGGPSGATCVETLRQNG-----------FTGKLYFITDENFLPYDRVKLSKQLDIKAD 1119
V+G GP+G + L + G G L + + LP D +
Sbjct: 128 VIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDIL----------- 176
Query: 1120 SILLRTEEFYKDNDIHVIK--GKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSS-PRT 1176
D + +++ G + + + + I L++ ++ ++LATG+ PR
Sbjct: 177 -----------DRRLELLERSGVEFKLNVRVG-RDITLEE-LLKEYDAVFLATGAGKPRP 223
Query: 1177 I----SQADGVNKVF-YLRTV--EDANNIAPHITPES---NVVVIGSSFIGMEAAAFCAS 1226
+ A GV +L + E + A TP + VVVIG M+ A +
Sbjct: 224 LDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAG--TA 281
Query: 1227 KV---KSVTVVGR-------GAVPFQ--ESLGKEVGER-ITKLFESKGVKFVMKAN---- 1269
KSVT R P + + GE + +L + F+
Sbjct: 282 LRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRVT 341
Query: 1270 VSSFEKNEKNDVTAANLDNGT--------TIPADLVIVGIGTVLNTNYLDGK--GVELNG 1319
F + E + G T AD VI+ IG + G++L+
Sbjct: 342 GVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDK 401
Query: 1320 QKAVVVNEYL-ETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAA 1371
+ + V+E L +T++PGV+AGGD A + A GR AA
Sbjct: 402 RGRIKVDENLQQTSIPGVFAGGDA--------VRGAALVVW---AIAEGREAA 443
|
Length = 457 |
| >gnl|CDD|239606 cd03530, Rieske_NirD_small_Bacillus, Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 8e-05
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 507 IYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQND 566
++A+ +C H G PL +G + V CP H ++ TG+ + P + + V +++
Sbjct: 35 VFALENRCPHKGGPLSEGIVHGEYVTCPLHNWVIDLETGEAQG-PDEGCVRTFPVKVEDG 93
Query: 567 D 567
Sbjct: 94 R 94
|
The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium. Length = 98 |
| >gnl|CDD|239606 cd03530, Rieske_NirD_small_Bacillus, Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 8e-05
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 978 IYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQND 1037
++A+ +C H G PL +G + V CP H ++ TG+ + P + + V +++
Sbjct: 35 VFALENRCPHKGGPLSEGIVHGEYVTCPLHNWVIDLETGEAQG-PDEGCVRTFPVKVEDG 93
Query: 1038 D 1038
Sbjct: 94 R 94
|
The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium. Length = 98 |
| >gnl|CDD|239829 cd04337, Rieske_RO_Alpha_Cao, Cao (chlorophyll a oxygenase) is a rieske non-heme iron-sulfur protein located within the plastid-envelope inner and thylakoid membranes, that catalyzes the conversion of chlorophyllide a to chlorophyllide b | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 2e-04
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 8/52 (15%)
Query: 514 CSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFP-------GMDSLPC 558
C+H PL G + +GR++CP+HG ++ G+ P G+ +LPC
Sbjct: 59 CAHRACPLSLGKVIEGRIQCPYHGWEYD-GDGECTKMPSTKCLNVGIAALPC 109
|
CAO is found not only in plants but also in chlorophytes and prochlorophytes. This domain represents the N-terminal rieske domain of the oxygenase alpha subunit. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Cao is closely related to several other plant RO's including Tic 55, a 55 kDa protein associated with protein transport through the inner chloroplast membrane; Ptc 52, a novel 52 kDa protein isolated from chloroplasts; and LLS1/Pao (Lethal-leaf spot 1/pheophorbide a oxygenase). Length = 129 |
| >gnl|CDD|239829 cd04337, Rieske_RO_Alpha_Cao, Cao (chlorophyll a oxygenase) is a rieske non-heme iron-sulfur protein located within the plastid-envelope inner and thylakoid membranes, that catalyzes the conversion of chlorophyllide a to chlorophyllide b | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 2e-04
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 8/52 (15%)
Query: 985 CSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFP-------GMDSLPC 1029
C+H PL G + +GR++CP+HG ++ G+ P G+ +LPC
Sbjct: 59 CAHRACPLSLGKVIEGRIQCPYHGWEYD-GDGECTKMPSTKCLNVGIAALPC 109
|
CAO is found not only in plants but also in chlorophytes and prochlorophytes. This domain represents the N-terminal rieske domain of the oxygenase alpha subunit. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Cao is closely related to several other plant RO's including Tic 55, a 55 kDa protein associated with protein transport through the inner chloroplast membrane; Ptc 52, a novel 52 kDa protein isolated from chloroplasts; and LLS1/Pao (Lethal-leaf spot 1/pheophorbide a oxygenase). Length = 129 |
| >gnl|CDD|239551 cd03469, Rieske_RO_Alpha_N, Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 4e-04
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 10/63 (15%)
Query: 514 CSHYGAPLVKGSLG-DGRVRCPWHGACFN-----IATGDIEDFPGMD----SLPCYKVTI 563
C H GA L +G G GR+ CP+HG ++ + E FPG D L V
Sbjct: 43 CPHRGARLCEGRGGNAGRLVCPYHGWTYDLDGKLVGVPREEGFPGFDKEKLGLRTVPVEE 102
Query: 564 QND 566
Sbjct: 103 WGG 105
|
These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The oxygenase component may contain alpha and beta subunits, with the beta subunit having a purely structural function. Some oxygenase components contain only an alpha subunit. The oxygenase alpha subunit has two domains, an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from the reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Reduced pyridine nucleotide is used as the initial source of two electrons for dioxygen activation. Length = 118 |
| >gnl|CDD|239551 cd03469, Rieske_RO_Alpha_N, Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 4e-04
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 10/63 (15%)
Query: 985 CSHYGAPLVKGSLG-DGRVRCPWHGACFN-----IATGDIEDFPGMD----SLPCYKVTI 1034
C H GA L +G G GR+ CP+HG ++ + E FPG D L V
Sbjct: 43 CPHRGARLCEGRGGNAGRLVCPYHGWTYDLDGKLVGVPREEGFPGFDKEKLGLRTVPVEE 102
Query: 1035 QND 1037
Sbjct: 103 WGG 105
|
These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The oxygenase component may contain alpha and beta subunits, with the beta subunit having a purely structural function. Some oxygenase components contain only an alpha subunit. The oxygenase alpha subunit has two domains, an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from the reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Reduced pyridine nucleotide is used as the initial source of two electrons for dioxygen activation. Length = 118 |
| >gnl|CDD|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 5e-04
Identities = 56/210 (26%), Positives = 90/210 (42%), Gaps = 43/210 (20%)
Query: 139 DFTKIYLATGSSPRTI-----SQADGV-NKVFYLRTVEDANNIAPHITPESNVVVIGSSF 192
+F + LA G+ + + GV + + +LR V A H P VVVIG
Sbjct: 278 EFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGT--ALH--PGKKVVVIGGGN 333
Query: 193 IGMEAA--AFCASKVKSVTVV---GRGAVPFQESLGKEVGERITKLFESKGVKFVMKANV 247
++AA A +SVT++ R +P + E+ E + ++GV A
Sbjct: 334 TAIDAARTALRLG-AESVTILYRRTREEMPANRA---EIEEAL-----AEGVSLRELAAP 384
Query: 248 SSFEKNEKN-DVTAANLDNGT-----------------TIPADLVIVGIGTVLNTNYLDG 289
S E++E ++TA + G T+ AD VI IG ++ +
Sbjct: 385 VSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIAEA 444
Query: 290 KGVELNGQKAVVVN-EYLETNVPGVYAGGD 318
G+ + V V+ E L+T+V GV+AGGD
Sbjct: 445 AGIGTSRNGTVKVDPETLQTSVAGVFAGGD 474
|
Length = 652 |
| >gnl|CDD|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 5e-04
Identities = 56/210 (26%), Positives = 90/210 (42%), Gaps = 43/210 (20%)
Query: 691 DFTKIYLATGSSPRTI-----SQADGV-NKVFYLRTVEDANNIAPHITPESNVVVIGSSF 744
+F + LA G+ + + GV + + +LR V A H P VVVIG
Sbjct: 278 EFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGT--ALH--PGKKVVVIGGGN 333
Query: 745 IGMEAA--AFCASKVKSVTVV---GRGAVPFQESLGKEVGERITKLFESKGVKFVMKANV 799
++AA A +SVT++ R +P + E+ E + ++GV A
Sbjct: 334 TAIDAARTALRLG-AESVTILYRRTREEMPANRA---EIEEAL-----AEGVSLRELAAP 384
Query: 800 SSFEKNEKN-DVTAANLDNGT-----------------TIPADLVIVGIGTVLNTNYLDG 841
S E++E ++TA + G T+ AD VI IG ++ +
Sbjct: 385 VSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIAEA 444
Query: 842 KGVELNGQKAVVVN-EYLETNVPGVYAGGD 870
G+ + V V+ E L+T+V GV+AGGD
Sbjct: 445 AGIGTSRNGTVKVDPETLQTSVAGVFAGGD 474
|
Length = 652 |
| >gnl|CDD|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 5e-04
Identities = 56/210 (26%), Positives = 90/210 (42%), Gaps = 43/210 (20%)
Query: 1162 DFTKIYLATGSSPRTI-----SQADGV-NKVFYLRTVEDANNIAPHITPESNVVVIGSSF 1215
+F + LA G+ + + GV + + +LR V A H P VVVIG
Sbjct: 278 EFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGT--ALH--PGKKVVVIGGGN 333
Query: 1216 IGMEAA--AFCASKVKSVTVV---GRGAVPFQESLGKEVGERITKLFESKGVKFVMKANV 1270
++AA A +SVT++ R +P + E+ E + ++GV A
Sbjct: 334 TAIDAARTALRLG-AESVTILYRRTREEMPANRA---EIEEAL-----AEGVSLRELAAP 384
Query: 1271 SSFEKNEKN-DVTAANLDNGT-----------------TIPADLVIVGIGTVLNTNYLDG 1312
S E++E ++TA + G T+ AD VI IG ++ +
Sbjct: 385 VSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIAEA 444
Query: 1313 KGVELNGQKAVVVN-EYLETNVPGVYAGGD 1341
G+ + V V+ E L+T+V GV+AGGD
Sbjct: 445 AGIGTSRNGTVKVDPETLQTSVAGVFAGGD 474
|
Length = 652 |
| >gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 8e-04
Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 20/129 (15%)
Query: 184 NVVVIGSSFIGMEAAAFCASKVKSVTVVG--------RGAVPFQESLGKEVGERIT---- 231
+VV+IG G+ AA A V ++ RG +P + L EV E +
Sbjct: 1 DVVIIGGGPAGLAAAIRLARLGLKVALIEREGGTCYNRGCLP--KKLLLEVAEGLELAIG 58
Query: 232 -----KLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY 286
++++ GV+ ++ V ++ EK V +++ G I D +I+ G
Sbjct: 59 LALPEEVYKEFGVEVLLGTEVVDIDRGEK-TVVLKDVETGREITYDKLIIATGARPRIPG 117
Query: 287 LDGKGVELN 295
+ G V
Sbjct: 118 IPGVEVATL 126
|
This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283 |
| >gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 8e-04
Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 20/129 (15%)
Query: 736 NVVVIGSSFIGMEAAAFCASKVKSVTVVG--------RGAVPFQESLGKEVGERIT---- 783
+VV+IG G+ AA A V ++ RG +P + L EV E +
Sbjct: 1 DVVIIGGGPAGLAAAIRLARLGLKVALIEREGGTCYNRGCLP--KKLLLEVAEGLELAIG 58
Query: 784 -----KLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY 838
++++ GV+ ++ V ++ EK V +++ G I D +I+ G
Sbjct: 59 LALPEEVYKEFGVEVLLGTEVVDIDRGEK-TVVLKDVETGREITYDKLIIATGARPRIPG 117
Query: 839 LDGKGVELN 847
+ G V
Sbjct: 118 IPGVEVATL 126
|
This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283 |
| >gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 8e-04
Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 20/129 (15%)
Query: 1207 NVVVIGSSFIGMEAAAFCASKVKSVTVVG--------RGAVPFQESLGKEVGERIT---- 1254
+VV+IG G+ AA A V ++ RG +P + L EV E +
Sbjct: 1 DVVIIGGGPAGLAAAIRLARLGLKVALIEREGGTCYNRGCLP--KKLLLEVAEGLELAIG 58
Query: 1255 -----KLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY 1309
++++ GV+ ++ V ++ EK V +++ G I D +I+ G
Sbjct: 59 LALPEEVYKEFGVEVLLGTEVVDIDRGEK-TVVLKDVETGREITYDKLIIATGARPRIPG 117
Query: 1310 LDGKGVELN 1318
+ G V
Sbjct: 118 IPGVEVATL 126
|
This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283 |
| >gnl|CDD|222355 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 7/86 (8%)
Query: 130 IKLQDGTSIDFTKIYLATG--SSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVV 187
++L DG ++ + ATG S P+ + +L V + ++ V V
Sbjct: 117 VRLTDGETVRADYVVDATGAFSVPKPPGFPGADAEGVHLVDVLERIDLKG-----KTVAV 171
Query: 188 IGSSFIGMEAAAFCASKVKSVTVVGR 213
IG ++AA K VT + R
Sbjct: 172 IGGGHTAIDAALNLLDLGKDVTWITR 197
|
Length = 202 |
| >gnl|CDD|222355 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 7/86 (8%)
Query: 682 IKLQDGTSIDFTKIYLATG--SSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVV 739
++L DG ++ + ATG S P+ + +L V + ++ V V
Sbjct: 117 VRLTDGETVRADYVVDATGAFSVPKPPGFPGADAEGVHLVDVLERIDLKG-----KTVAV 171
Query: 740 IGSSFIGMEAAAFCASKVKSVTVVGR 765
IG ++AA K VT + R
Sbjct: 172 IGGGHTAIDAALNLLDLGKDVTWITR 197
|
Length = 202 |
| >gnl|CDD|222355 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 7/86 (8%)
Query: 1153 IKLQDGTSIDFTKIYLATG--SSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVV 1210
++L DG ++ + ATG S P+ + +L V + ++ V V
Sbjct: 117 VRLTDGETVRADYVVDATGAFSVPKPPGFPGADAEGVHLVDVLERIDLKG-----KTVAV 171
Query: 1211 IGSSFIGMEAAAFCASKVKSVTVVGR 1236
IG ++AA K VT + R
Sbjct: 172 IGGGHTAIDAALNLLDLGKDVTWITR 197
|
Length = 202 |
| >gnl|CDD|172486 PRK13984, PRK13984, putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.001
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 11/94 (11%)
Query: 235 ESKGVKFVMKANVSSFEKNEKNDVTAANLD--NGTTIPADLVIVGIGTVLNTNYLD---G 289
+ KGVKF K V F++ + D + + AD+V+ IG + +YL
Sbjct: 494 KVKGVKF--KKCVEVFDEEGR---FNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELK 548
Query: 290 KGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 323
+E + ++ NEY +T++P ++AGGDI + P
Sbjct: 549 SKLEFVRGR-ILTNEYGQTSIPWLFAGGDIVHGP 581
|
Length = 604 |
| >gnl|CDD|172486 PRK13984, PRK13984, putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.001
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 11/94 (11%)
Query: 787 ESKGVKFVMKANVSSFEKNEKNDVTAANLD--NGTTIPADLVIVGIGTVLNTNYLD---G 841
+ KGVKF K V F++ + D + + AD+V+ IG + +YL
Sbjct: 494 KVKGVKF--KKCVEVFDEEGR---FNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELK 548
Query: 842 KGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 875
+E + ++ NEY +T++P ++AGGDI + P
Sbjct: 549 SKLEFVRGR-ILTNEYGQTSIPWLFAGGDIVHGP 581
|
Length = 604 |
| >gnl|CDD|172486 PRK13984, PRK13984, putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.001
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 11/94 (11%)
Query: 1258 ESKGVKFVMKANVSSFEKNEKNDVTAANLD--NGTTIPADLVIVGIGTVLNTNYLD---G 1312
+ KGVKF K V F++ + D + + AD+V+ IG + +YL
Sbjct: 494 KVKGVKF--KKCVEVFDEEGR---FNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELK 548
Query: 1313 KGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 1346
+E + ++ NEY +T++P ++AGGDI + P
Sbjct: 549 SKLEFVRGR-ILTNEYGQTSIPWLFAGGDIVHGP 581
|
Length = 604 |
| >gnl|CDD|131430 TIGR02377, MocE_fam_FeS, Rieske [2Fe-2S] domain protein, MocE subfamily | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 0.002
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 974 AERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVT 1033
+ YA C+H A L G + D V CP H CF+ TG+ + P +L Y V
Sbjct: 32 PDDQYYATDGLCTHEYAHLADGLVMDTTVECPKHAGCFDYRTGEALNPPVCVNLKTYPVK 91
Query: 1034 IQNDDSVVVQ 1043
+ D +V V
Sbjct: 92 V-VDGAVYVD 100
|
This model describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members of this family are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H]. Length = 101 |
| >gnl|CDD|239611 cd03537, Rieske_RO_Alpha_PrnD, This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit of aminopyrrolnitrin oxygenase (PrnD) | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.002
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 10/90 (11%)
Query: 948 FTAYYSNA--DKVLAILTVGMDPLAAQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCP 1005
+ A S+ DK + G +A + A + CSH GA L G + DG ++CP
Sbjct: 5 YVAMRSDDLKDKPTELTLFGRPCVAWRGATGRAVVMDRHCSHLGANLADGRVKDGCIQCP 64
Query: 1006 WH-------GACFNIATGDIEDFPGMDSLP 1028
+H G C +I G ++ +P
Sbjct: 65 FHHWRYDEQGQCVHIP-GHSTAVRRLEPVP 93
|
PrnD is a novel Rieske N-oxygenase that catalyzes the final step in the pyrrolnitrin biosynthetic pathway, the oxidation of the amino group in aminopyrrolnitrin to a nitro group, forming the antibiotic pyrrolnitrin. The biosynthesis of pyrrolnitrin is one of the best examples of enzyme-catalyzed arylamine oxidation. Although arylamine oxygenases are widely distributed within the microbial world and used in a variety of metabolic reactions, PrnD represents one of only two known examples of arylamine oxygenases or N-oxygenases involved in arylnitro group formation, the other being AurF involved in aureothin biosynthesis. Length = 123 |
| >gnl|CDD|239611 cd03537, Rieske_RO_Alpha_PrnD, This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit of aminopyrrolnitrin oxygenase (PrnD) | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.002
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 514 CSHYGAPLVKGSLGDGRVRCPWH-------GACFNIATGDIEDFPGMDSLP 557
CSH GA L G + DG ++CP+H G C +I G ++ +P
Sbjct: 44 CSHLGANLADGRVKDGCIQCPFHHWRYDEQGQCVHIP-GHSTAVRRLEPVP 93
|
PrnD is a novel Rieske N-oxygenase that catalyzes the final step in the pyrrolnitrin biosynthetic pathway, the oxidation of the amino group in aminopyrrolnitrin to a nitro group, forming the antibiotic pyrrolnitrin. The biosynthesis of pyrrolnitrin is one of the best examples of enzyme-catalyzed arylamine oxidation. Although arylamine oxygenases are widely distributed within the microbial world and used in a variety of metabolic reactions, PrnD represents one of only two known examples of arylamine oxygenases or N-oxygenases involved in arylnitro group formation, the other being AurF involved in aureothin biosynthesis. Length = 123 |
| >gnl|CDD|131430 TIGR02377, MocE_fam_FeS, Rieske [2Fe-2S] domain protein, MocE subfamily | Back alignment and domain information |
|---|
Score = 38.3 bits (89), Expect = 0.003
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 507 IYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQND 566
YA C+H A L G + D V CP H CF+ TG+ + P +L Y V + D
Sbjct: 36 YYATDGLCTHEYAHLADGLVMDTTVECPKHAGCFDYRTGEALNPPVCVNLKTYPVKV-VD 94
Query: 567 DSVVVQ 572
+V V
Sbjct: 95 GAVYVD 100
|
This model describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members of this family are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H]. Length = 101 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1466 | |||
| KOG1336|consensus | 478 | 100.0 | ||
| PRK09754 | 396 | phenylpropionate dioxygenase ferredoxin reductase | 100.0 | |
| KOG1336|consensus | 478 | 100.0 | ||
| PRK09754 | 396 | phenylpropionate dioxygenase ferredoxin reductase | 100.0 | |
| TIGR02374 | 785 | nitri_red_nirB nitrite reductase [NAD(P)H], large | 100.0 | |
| PRK14989 | 847 | nitrite reductase subunit NirD; Provisional | 100.0 | |
| PRK04965 | 377 | NADH:flavorubredoxin oxidoreductase; Provisional | 100.0 | |
| COG1251 | 793 | NirB NAD(P)H-nitrite reductase [Energy production | 100.0 | |
| COG1249 | 454 | Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, | 100.0 | |
| PRK14989 | 847 | nitrite reductase subunit NirD; Provisional | 100.0 | |
| KOG1346|consensus | 659 | 100.0 | ||
| PRK04965 | 377 | NADH:flavorubredoxin oxidoreductase; Provisional | 100.0 | |
| TIGR02374 | 785 | nitri_red_nirB nitrite reductase [NAD(P)H], large | 100.0 | |
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 100.0 | |
| PRK09564 | 444 | coenzyme A disulfide reductase; Reviewed | 100.0 | |
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 100.0 | |
| PRK09564 | 444 | coenzyme A disulfide reductase; Reviewed | 100.0 | |
| TIGR01421 | 450 | gluta_reduc_1 glutathione-disulfide reductase, ani | 100.0 | |
| KOG1335|consensus | 506 | 100.0 | ||
| COG1249 | 454 | Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, | 100.0 | |
| PLN02507 | 499 | glutathione reductase | 100.0 | |
| PRK06116 | 450 | glutathione reductase; Validated | 100.0 | |
| PRK06467 | 471 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| PLN02546 | 558 | glutathione reductase | 100.0 | |
| PRK06370 | 463 | mercuric reductase; Validated | 100.0 | |
| TIGR01423 | 486 | trypano_reduc trypanothione-disulfide reductase. T | 100.0 | |
| COG1251 | 793 | NirB NAD(P)H-nitrite reductase [Energy production | 100.0 | |
| TIGR01424 | 446 | gluta_reduc_2 glutathione-disulfide reductase, pla | 100.0 | |
| PTZ00058 | 561 | glutathione reductase; Provisional | 100.0 | |
| PRK05249 | 461 | soluble pyridine nucleotide transhydrogenase; Prov | 100.0 | |
| COG1252 | 405 | Ndh NADH dehydrogenase, FAD-containing subunit [En | 100.0 | |
| PRK07818 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| PRK06115 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| PRK06416 | 462 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| PRK07845 | 466 | flavoprotein disulfide reductase; Reviewed | 100.0 | |
| COG1252 | 405 | Ndh NADH dehydrogenase, FAD-containing subunit [En | 100.0 | |
| TIGR03385 | 427 | CoA_CoA_reduc CoA-disulfide reductase. Members of | 100.0 | |
| PRK14694 | 468 | putative mercuric reductase; Provisional | 100.0 | |
| PLN02507 | 499 | glutathione reductase | 100.0 | |
| PRK08010 | 441 | pyridine nucleotide-disulfide oxidoreductase; Prov | 100.0 | |
| TIGR01421 | 450 | gluta_reduc_1 glutathione-disulfide reductase, ani | 100.0 | |
| PRK07846 | 451 | mycothione reductase; Reviewed | 100.0 | |
| PRK07251 | 438 | pyridine nucleotide-disulfide oxidoreductase; Prov | 100.0 | |
| PRK06327 | 475 | dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| PRK06116 | 450 | glutathione reductase; Validated | 100.0 | |
| TIGR01424 | 446 | gluta_reduc_2 glutathione-disulfide reductase, pla | 100.0 | |
| PTZ00318 | 424 | NADH dehydrogenase-like protein; Provisional | 100.0 | |
| PRK05976 | 472 | dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| TIGR02053 | 463 | MerA mercuric reductase. This model represents the | 100.0 | |
| PRK14727 | 479 | putative mercuric reductase; Provisional | 100.0 | |
| PRK06467 | 471 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| PRK06370 | 463 | mercuric reductase; Validated | 100.0 | |
| PRK13748 | 561 | putative mercuric reductase; Provisional | 100.0 | |
| PRK05249 | 461 | soluble pyridine nucleotide transhydrogenase; Prov | 100.0 | |
| PLN02546 | 558 | glutathione reductase | 100.0 | |
| PRK08010 | 441 | pyridine nucleotide-disulfide oxidoreductase; Prov | 100.0 | |
| TIGR01438 | 484 | TGR thioredoxin and glutathione reductase selenopr | 100.0 | |
| PTZ00052 | 499 | thioredoxin reductase; Provisional | 100.0 | |
| PTZ00058 | 561 | glutathione reductase; Provisional | 100.0 | |
| PTZ00153 | 659 | lipoamide dehydrogenase; Provisional | 100.0 | |
| PRK06416 | 462 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| TIGR03452 | 452 | mycothione_red mycothione reductase. Mycothiol, a | 100.0 | |
| PRK14694 | 468 | putative mercuric reductase; Provisional | 100.0 | |
| TIGR02053 | 463 | MerA mercuric reductase. This model represents the | 100.0 | |
| PRK06912 | 458 | acoL dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| PTZ00318 | 424 | NADH dehydrogenase-like protein; Provisional | 100.0 | |
| PRK07845 | 466 | flavoprotein disulfide reductase; Reviewed | 100.0 | |
| TIGR01423 | 486 | trypano_reduc trypanothione-disulfide reductase. T | 100.0 | |
| PRK06292 | 460 | dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| KOG0405|consensus | 478 | 100.0 | ||
| PRK07846 | 451 | mycothione reductase; Reviewed | 100.0 | |
| PRK13748 | 561 | putative mercuric reductase; Provisional | 100.0 | |
| TIGR03385 | 427 | CoA_CoA_reduc CoA-disulfide reductase. Members of | 100.0 | |
| PRK07251 | 438 | pyridine nucleotide-disulfide oxidoreductase; Prov | 100.0 | |
| PRK14727 | 479 | putative mercuric reductase; Provisional | 100.0 | |
| PRK09853 | 1019 | putative selenate reductase subunit YgfK; Provisio | 100.0 | |
| KOG0405|consensus | 478 | 100.0 | ||
| TIGR01350 | 461 | lipoamide_DH dihydrolipoamide dehydrogenase. The m | 100.0 | |
| PRK05976 | 472 | dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| PRK06115 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| TIGR03169 | 364 | Nterm_to_SelD pyridine nucleotide-disulfide oxidor | 100.0 | |
| PRK07818 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| TIGR01438 | 484 | TGR thioredoxin and glutathione reductase selenopr | 100.0 | |
| PRK06912 | 458 | acoL dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| TIGR03452 | 452 | mycothione_red mycothione reductase. Mycothiol, a | 100.0 | |
| TIGR01350 | 461 | lipoamide_DH dihydrolipoamide dehydrogenase. The m | 100.0 | |
| TIGR03169 | 364 | Nterm_to_SelD pyridine nucleotide-disulfide oxidor | 100.0 | |
| PRK12831 | 464 | putative oxidoreductase; Provisional | 100.0 | |
| PTZ00153 | 659 | lipoamide dehydrogenase; Provisional | 100.0 | |
| PRK06327 | 475 | dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 100.0 | |
| PTZ00052 | 499 | thioredoxin reductase; Provisional | 100.0 | |
| PRK06292 | 460 | dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| KOG1346|consensus | 659 | 99.97 | ||
| KOG1335|consensus | 506 | 99.97 | ||
| COG0446 | 415 | HcaD Uncharacterized NAD(FAD)-dependent dehydrogen | 99.97 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 99.97 | |
| PRK09853 | 1019 | putative selenate reductase subunit YgfK; Provisio | 99.97 | |
| TIGR03315 | 1012 | Se_ygfK putative selenate reductase, YgfK subunit. | 99.97 | |
| TIGR01292 | 300 | TRX_reduct thioredoxin-disulfide reductase. This m | 99.97 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 99.97 | |
| PRK10262 | 321 | thioredoxin reductase; Provisional | 99.97 | |
| PRK12831 | 464 | putative oxidoreductase; Provisional | 99.97 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 99.97 | |
| COG0492 | 305 | TrxB Thioredoxin reductase [Posttranslational modi | 99.97 | |
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 99.97 | |
| COG0492 | 305 | TrxB Thioredoxin reductase [Posttranslational modi | 99.97 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 99.97 | |
| PRK12778 | 752 | putative bifunctional 2-polyprenylphenol hydroxyla | 99.96 | |
| PRK11749 | 457 | dihydropyrimidine dehydrogenase subunit A; Provisi | 99.96 | |
| KOG4716|consensus | 503 | 99.96 | ||
| TIGR01292 | 300 | TRX_reduct thioredoxin-disulfide reductase. This m | 99.96 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 99.96 | |
| PRK10262 | 321 | thioredoxin reductase; Provisional | 99.96 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 99.96 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 99.96 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 99.96 | |
| TIGR03315 | 1012 | Se_ygfK putative selenate reductase, YgfK subunit. | 99.96 | |
| KOG4716|consensus | 503 | 99.96 | ||
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 99.96 | |
| PRK12770 | 352 | putative glutamate synthase subunit beta; Provisio | 99.95 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 99.95 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 99.95 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 99.95 | |
| PRK12770 | 352 | putative glutamate synthase subunit beta; Provisio | 99.95 | |
| PRK11749 | 457 | dihydropyrimidine dehydrogenase subunit A; Provisi | 99.95 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 99.95 | |
| PRK12778 | 752 | putative bifunctional 2-polyprenylphenol hydroxyla | 99.95 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 99.95 | |
| KOG2495|consensus | 491 | 99.94 | ||
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 99.94 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 99.94 | |
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 99.94 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 99.94 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 99.94 | |
| COG3634 | 520 | AhpF Alkyl hydroperoxide reductase, large subunit | 99.94 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 99.94 | |
| COG0446 | 415 | HcaD Uncharacterized NAD(FAD)-dependent dehydrogen | 99.94 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 99.94 | |
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 99.93 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 99.93 | |
| KOG2495|consensus | 491 | 99.93 | ||
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 99.93 | |
| KOG0404|consensus | 322 | 99.92 | ||
| COG3634 | 520 | AhpF Alkyl hydroperoxide reductase, large subunit | 99.92 | |
| KOG0404|consensus | 322 | 99.92 | ||
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 99.92 | |
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 99.92 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 99.92 | |
| TIGR01372 | 985 | soxA sarcosine oxidase, alpha subunit family, hete | 99.91 | |
| TIGR01372 | 985 | soxA sarcosine oxidase, alpha subunit family, hete | 99.9 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 99.88 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 99.87 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 99.87 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 99.86 | |
| KOG0399|consensus | 2142 | 99.84 | ||
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 99.84 | |
| KOG3851|consensus | 446 | 99.82 | ||
| KOG2755|consensus | 334 | 99.81 | ||
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 99.8 | |
| COG1148 | 622 | HdrA Heterodisulfide reductase, subunit A and rela | 99.8 | |
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 99.79 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 99.76 | |
| KOG2755|consensus | 334 | 99.76 | ||
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 99.76 | |
| PF07992 | 201 | Pyr_redox_2: Pyridine nucleotide-disulphide oxidor | 99.75 | |
| PF07992 | 201 | Pyr_redox_2: Pyridine nucleotide-disulphide oxidor | 99.75 | |
| COG1148 | 622 | HdrA Heterodisulfide reductase, subunit A and rela | 99.75 | |
| KOG3851|consensus | 446 | 99.75 | ||
| KOG0399|consensus | 2142 | 99.72 | ||
| TIGR02377 | 101 | MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE | 99.62 | |
| PF14759 | 85 | Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LX | 99.61 | |
| cd03478 | 95 | Rieske_AIFL_N AIFL (apoptosis-inducing factor like | 99.61 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 99.6 | |
| PRK09965 | 106 | 3-phenylpropionate dioxygenase ferredoxin subunit; | 99.58 | |
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 99.57 | |
| cd03528 | 98 | Rieske_RO_ferredoxin Rieske non-heme iron oxygenas | 99.56 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 99.56 | |
| COG2146 | 106 | {NirD} Ferredoxin subunits of nitrite reductase an | 99.55 | |
| cd03530 | 98 | Rieske_NirD_small_Bacillus Small subunit of nitrit | 99.55 | |
| KOG1800|consensus | 468 | 99.55 | ||
| KOG1800|consensus | 468 | 99.55 | ||
| PRK09511 | 108 | nirD nitrite reductase small subunit; Provisional | 99.53 | |
| KOG1399|consensus | 448 | 99.52 | ||
| PF00355 | 97 | Rieske: Rieske [2Fe-2S] domain; InterPro: IPR01794 | 99.51 | |
| COG2072 | 443 | TrkA Predicted flavoprotein involved in K+ transpo | 99.5 | |
| cd03474 | 108 | Rieske_T4moC Toluene-4-monooxygenase effector prot | 99.49 | |
| KOG1399|consensus | 448 | 99.49 | ||
| cd04337 | 129 | Rieske_RO_Alpha_Cao Cao (chlorophyll a oxygenase) | 99.49 | |
| cd03531 | 115 | Rieske_RO_Alpha_KSH The alignment model represents | 99.48 | |
| COG2072 | 443 | TrkA Predicted flavoprotein involved in K+ transpo | 99.48 | |
| cd04338 | 134 | Rieske_RO_Alpha_Tic55 Tic55 is a 55kDa LLS1-relate | 99.48 | |
| PF13434 | 341 | K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi | 99.47 | |
| cd03529 | 103 | Rieske_NirD Assimilatory nitrite reductase (NirD) | 99.47 | |
| PF13434 | 341 | K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi | 99.46 | |
| PF13806 | 104 | Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A | 99.46 | |
| TIGR02378 | 105 | nirD_assim_sml nitrite reductase [NAD(P)H], small | 99.46 | |
| cd03537 | 123 | Rieske_RO_Alpha_PrnD This alignment model represen | 99.46 | |
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 99.46 | |
| cd03532 | 116 | Rieske_RO_Alpha_VanA_DdmC Rieske non-heme iron oxy | 99.46 | |
| cd03476 | 126 | Rieske_ArOX_small Small subunit of Arsenite oxidas | 99.45 | |
| cd03473 | 107 | Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophospha | 99.44 | |
| TIGR02377 | 101 | MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE | 99.43 | |
| cd03480 | 138 | Rieske_RO_Alpha_PaO Rieske non-heme iron oxygenase | 99.43 | |
| cd03471 | 126 | Rieske_cytochrome_b6f Iron-sulfur protein (ISP) co | 99.43 | |
| cd03479 | 144 | Rieske_RO_Alpha_PhDO_like Rieske non-heme iron oxy | 99.41 | |
| cd03469 | 118 | Rieske_RO_Alpha_N Rieske non-heme iron oxygenase ( | 99.41 | |
| COG3486 | 436 | IucD Lysine/ornithine N-monooxygenase [Secondary m | 99.4 | |
| cd03467 | 98 | Rieske Rieske domain; a [2Fe-2S] cluster binding d | 99.4 | |
| TIGR02694 | 129 | arsenite_ox_S arsenite oxidase, small subunit. Thi | 99.39 | |
| PRK05329 | 422 | anaerobic glycerol-3-phosphate dehydrogenase subun | 99.38 | |
| cd03548 | 136 | Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxy | 99.38 | |
| cd03477 | 91 | Rieske_YhfW_C YhfW family, C-terminal Rieske domai | 99.38 | |
| PRK05329 | 422 | anaerobic glycerol-3-phosphate dehydrogenase subun | 99.36 | |
| COG3486 | 436 | IucD Lysine/ornithine N-monooxygenase [Secondary m | 99.35 | |
| cd03478 | 95 | Rieske_AIFL_N AIFL (apoptosis-inducing factor like | 99.33 | |
| PRK09965 | 106 | 3-phenylpropionate dioxygenase ferredoxin subunit; | 99.33 | |
| PRK09511 | 108 | nirD nitrite reductase small subunit; Provisional | 99.32 | |
| PLN02281 | 536 | chlorophyllide a oxygenase | 99.31 | |
| cd03531 | 115 | Rieske_RO_Alpha_KSH The alignment model represents | 99.28 | |
| cd03528 | 98 | Rieske_RO_ferredoxin Rieske non-heme iron oxygenas | 99.26 | |
| COG2146 | 106 | {NirD} Ferredoxin subunits of nitrite reductase an | 99.25 | |
| PRK13474 | 178 | cytochrome b6-f complex iron-sulfur subunit; Provi | 99.23 | |
| cd03530 | 98 | Rieske_NirD_small_Bacillus Small subunit of nitrit | 99.23 | |
| cd03529 | 103 | Rieske_NirD Assimilatory nitrite reductase (NirD) | 99.23 | |
| cd03474 | 108 | Rieske_T4moC Toluene-4-monooxygenase effector prot | 99.22 | |
| cd04338 | 134 | Rieske_RO_Alpha_Tic55 Tic55 is a 55kDa LLS1-relate | 99.22 | |
| cd04337 | 129 | Rieske_RO_Alpha_Cao Cao (chlorophyll a oxygenase) | 99.21 | |
| PLN00095 | 394 | chlorophyllide a oxygenase; Provisional | 99.2 | |
| PF13806 | 104 | Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A | 99.19 | |
| cd03470 | 126 | Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) co | 99.19 | |
| cd03532 | 116 | Rieske_RO_Alpha_VanA_DdmC Rieske non-heme iron oxy | 99.19 | |
| TIGR02378 | 105 | nirD_assim_sml nitrite reductase [NAD(P)H], small | 99.18 | |
| cd03536 | 123 | Rieske_RO_Alpha_DTDO This alignment model represen | 99.18 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 99.18 | |
| cd03535 | 123 | Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase | 99.17 | |
| cd03541 | 118 | Rieske_RO_Alpha_CMO Rieske non-heme iron oxygenase | 99.17 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 99.17 | |
| PF00355 | 97 | Rieske: Rieske [2Fe-2S] domain; InterPro: IPR01794 | 99.16 | |
| cd03545 | 150 | Rieske_RO_Alpha_OHBDO_like Rieske non-heme iron ox | 99.14 | |
| cd03472 | 128 | Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxy | 99.14 | |
| cd03476 | 126 | Rieske_ArOX_small Small subunit of Arsenite oxidas | 99.13 | |
| cd03537 | 123 | Rieske_RO_Alpha_PrnD This alignment model represen | 99.12 | |
| cd03539 | 129 | Rieske_RO_Alpha_S5H This alignment model represent | 99.12 | |
| cd03469 | 118 | Rieske_RO_Alpha_N Rieske non-heme iron oxygenase ( | 99.11 | |
| cd03480 | 138 | Rieske_RO_Alpha_PaO Rieske non-heme iron oxygenase | 99.1 | |
| COG2081 | 408 | Predicted flavoproteins [General function predicti | 99.1 | |
| TIGR02694 | 129 | arsenite_ox_S arsenite oxidase, small subunit. Thi | 99.08 | |
| cd03473 | 107 | Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophospha | 99.08 | |
| cd03467 | 98 | Rieske Rieske domain; a [2Fe-2S] cluster binding d | 99.08 | |
| cd03479 | 144 | Rieske_RO_Alpha_PhDO_like Rieske non-heme iron oxy | 99.06 | |
| cd03548 | 136 | Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxy | 99.05 | |
| PLN02518 | 539 | pheophorbide a oxygenase | 99.03 | |
| cd03471 | 126 | Rieske_cytochrome_b6f Iron-sulfur protein (ISP) co | 99.03 | |
| cd03542 | 123 | Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenas | 99.01 | |
| cd03477 | 91 | Rieske_YhfW_C YhfW family, C-terminal Rieske domai | 99.01 | |
| cd03475 | 171 | Rieske_SoxF_SoxL SoxF and SoxL family, Rieske doma | 98.99 | |
| COG4529 | 474 | Uncharacterized protein conserved in bacteria [Fun | 98.98 | |
| cd03538 | 146 | Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygena | 98.95 | |
| PLN00095 | 394 | chlorophyllide a oxygenase; Provisional | 98.86 | |
| PLN02281 | 536 | chlorophyllide a oxygenase | 98.86 | |
| TIGR03378 | 419 | glycerol3P_GlpB glycerol-3-phosphate dehydrogenase | 98.81 | |
| cd03470 | 126 | Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) co | 98.8 | |
| COG2081 | 408 | Predicted flavoproteins [General function predicti | 98.78 | |
| COG4638 | 367 | HcaE Phenylpropionate dioxygenase and related ring | 98.78 | |
| cd03535 | 123 | Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase | 98.76 | |
| PRK13474 | 178 | cytochrome b6-f complex iron-sulfur subunit; Provi | 98.76 | |
| cd03541 | 118 | Rieske_RO_Alpha_CMO Rieske non-heme iron oxygenase | 98.76 | |
| COG4529 | 474 | Uncharacterized protein conserved in bacteria [Fun | 98.74 | |
| TIGR01416 | 174 | Rieske_proteo ubiquinol-cytochrome c reductase, ir | 98.73 | |
| cd03545 | 150 | Rieske_RO_Alpha_OHBDO_like Rieske non-heme iron ox | 98.71 | |
| cd03536 | 123 | Rieske_RO_Alpha_DTDO This alignment model represen | 98.7 | |
| PRK09897 | 534 | hypothetical protein; Provisional | 98.7 | |
| cd03472 | 128 | Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxy | 98.68 | |
| COG3075 | 421 | GlpB Anaerobic glycerol-3-phosphate dehydrogenase | 98.66 | |
| PRK09897 | 534 | hypothetical protein; Provisional | 98.63 | |
| TIGR03378 | 419 | glycerol3P_GlpB glycerol-3-phosphate dehydrogenase | 98.63 | |
| cd03539 | 129 | Rieske_RO_Alpha_S5H This alignment model represent | 98.62 | |
| COG0723 | 177 | QcrA Rieske Fe-S protein [Energy production and co | 98.61 | |
| cd03542 | 123 | Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenas | 98.55 | |
| PLN02518 | 539 | pheophorbide a oxygenase | 98.54 | |
| TIGR03228 | 438 | anthran_1_2_A anthranilate 1,2-dioxygenase, large | 98.53 | |
| PF03486 | 409 | HI0933_like: HI0933-like protein; InterPro: IPR004 | 98.52 | |
| cd03475 | 171 | Rieske_SoxF_SoxL SoxF and SoxL family, Rieske doma | 98.5 | |
| TIGR03229 | 433 | benzo_1_2_benA benzoate 1,2-dioxygenase, large sub | 98.47 | |
| cd03538 | 146 | Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygena | 98.46 | |
| COG3075 | 421 | GlpB Anaerobic glycerol-3-phosphate dehydrogenase | 98.33 | |
| PRK08401 | 466 | L-aspartate oxidase; Provisional | 98.28 | |
| TIGR00551 | 488 | nadB L-aspartate oxidase. L-aspartate oxidase is t | 98.25 | |
| PRK07804 | 541 | L-aspartate oxidase; Provisional | 98.24 | |
| PRK08401 | 466 | L-aspartate oxidase; Provisional | 98.24 | |
| PRK12842 | 574 | putative succinate dehydrogenase; Reviewed | 98.23 | |
| PRK04176 | 257 | ribulose-1,5-biphosphate synthetase; Provisional | 98.23 | |
| TIGR03171 | 321 | soxL2 Rieske iron-sulfur protein SoxL2. This iron- | 98.23 | |
| PF14721 | 133 | AIF_C: Apoptosis-inducing factor, mitochondrion-as | 98.22 | |
| PLN02463 | 447 | lycopene beta cyclase | 98.22 | |
| COG0029 | 518 | NadB Aspartate oxidase [Coenzyme metabolism] | 98.21 | |
| TIGR00551 | 488 | nadB L-aspartate oxidase. L-aspartate oxidase is t | 98.21 | |
| TIGR01416 | 174 | Rieske_proteo ubiquinol-cytochrome c reductase, ir | 98.2 | |
| PLN02463 | 447 | lycopene beta cyclase | 98.19 | |
| PRK07804 | 541 | L-aspartate oxidase; Provisional | 98.18 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 98.16 | |
| PRK09231 | 582 | fumarate reductase flavoprotein subunit; Validated | 98.13 | |
| PF01266 | 358 | DAO: FAD dependent oxidoreductase; InterPro: IPR00 | 98.12 | |
| TIGR02032 | 295 | GG-red-SF geranylgeranyl reductase family. This mo | 98.12 | |
| COG4638 | 367 | HcaE Phenylpropionate dioxygenase and related ring | 98.11 | |
| TIGR01176 | 580 | fum_red_Fp fumarate reductase, flavoprotein subuni | 98.1 | |
| PRK06175 | 433 | L-aspartate oxidase; Provisional | 98.1 | |
| PF14759 | 85 | Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LX | 98.09 | |
| COG0029 | 518 | NadB Aspartate oxidase [Coenzyme metabolism] | 98.09 | |
| TIGR01812 | 566 | sdhA_frdA_Gneg succinate dehydrogenase or fumarate | 98.08 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 98.06 | |
| PRK10157 | 428 | putative oxidoreductase FixC; Provisional | 98.06 | |
| PRK04176 | 257 | ribulose-1,5-biphosphate synthetase; Provisional | 98.05 | |
| COG0579 | 429 | Predicted dehydrogenase [General function predicti | 98.05 | |
| TIGR00292 | 254 | thiazole biosynthesis enzyme. This enzyme is invol | 98.04 | |
| PRK05945 | 575 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.04 | |
| PRK06263 | 543 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.03 | |
| COG0644 | 396 | FixC Dehydrogenases (flavoproteins) [Energy produc | 98.02 | |
| PRK08275 | 554 | putative oxidoreductase; Provisional | 98.02 | |
| PRK06175 | 433 | L-aspartate oxidase; Provisional | 98.01 | |
| TIGR03329 | 460 | Phn_aa_oxid putative aminophosphonate oxidoreducta | 98.01 | |
| PRK12842 | 574 | putative succinate dehydrogenase; Reviewed | 98.01 | |
| COG0644 | 396 | FixC Dehydrogenases (flavoproteins) [Energy produc | 98.0 | |
| PRK09231 | 582 | fumarate reductase flavoprotein subunit; Validated | 98.0 | |
| COG1233 | 487 | Phytoene dehydrogenase and related proteins [Secon | 98.0 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 98.0 | |
| PRK06263 | 543 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.99 | |
| PRK10157 | 428 | putative oxidoreductase FixC; Provisional | 97.99 | |
| PRK09077 | 536 | L-aspartate oxidase; Provisional | 97.99 | |
| COG0579 | 429 | Predicted dehydrogenase [General function predicti | 97.99 | |
| PRK10015 | 429 | oxidoreductase; Provisional | 97.98 | |
| PRK05945 | 575 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.98 | |
| PF04820 | 454 | Trp_halogenase: Tryptophan halogenase; InterPro: I | 97.97 | |
| PRK08275 | 554 | putative oxidoreductase; Provisional | 97.97 | |
| COG1635 | 262 | THI4 Ribulose 1,5-bisphosphate synthetase, convert | 97.97 | |
| PRK13977 | 576 | myosin-cross-reactive antigen; Provisional | 97.95 | |
| PF03486 | 409 | HI0933_like: HI0933-like protein; InterPro: IPR004 | 97.95 | |
| COG0723 | 177 | QcrA Rieske Fe-S protein [Energy production and co | 97.95 | |
| TIGR01176 | 580 | fum_red_Fp fumarate reductase, flavoprotein subuni | 97.95 | |
| TIGR01812 | 566 | sdhA_frdA_Gneg succinate dehydrogenase or fumarate | 97.94 | |
| TIGR02734 | 502 | crtI_fam phytoene desaturase. Phytoene is converte | 97.94 | |
| PRK06834 | 488 | hypothetical protein; Provisional | 97.94 | |
| PRK06452 | 566 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.94 | |
| PRK13977 | 576 | myosin-cross-reactive antigen; Provisional | 97.94 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 97.94 | |
| TIGR02032 | 295 | GG-red-SF geranylgeranyl reductase family. This mo | 97.94 | |
| PRK06069 | 577 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.93 | |
| PF01266 | 358 | DAO: FAD dependent oxidoreductase; InterPro: IPR00 | 97.93 | |
| PRK06854 | 608 | adenylylsulfate reductase subunit alpha; Validated | 97.92 | |
| PRK07843 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 97.92 | |
| PRK08205 | 583 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.91 | |
| PRK10015 | 429 | oxidoreductase; Provisional | 97.9 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 97.9 | |
| PRK11728 | 393 | hydroxyglutarate oxidase; Provisional | 97.9 | |
| COG2509 | 486 | Uncharacterized FAD-dependent dehydrogenases [Gene | 97.9 | |
| PRK06069 | 577 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.9 | |
| PF01134 | 392 | GIDA: Glucose inhibited division protein A; InterP | 97.9 | |
| PLN02697 | 529 | lycopene epsilon cyclase | 97.9 | |
| PRK07395 | 553 | L-aspartate oxidase; Provisional | 97.89 | |
| PRK07395 | 553 | L-aspartate oxidase; Provisional | 97.89 | |
| COG3380 | 331 | Predicted NAD/FAD-dependent oxidoreductase [Genera | 97.89 | |
| TIGR01790 | 388 | carotene-cycl lycopene cyclase family protein. Thi | 97.88 | |
| PRK06834 | 488 | hypothetical protein; Provisional | 97.88 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 97.87 | |
| PLN02697 | 529 | lycopene epsilon cyclase | 97.87 | |
| PRK08071 | 510 | L-aspartate oxidase; Provisional | 97.87 | |
| PLN02815 | 594 | L-aspartate oxidase | 97.86 | |
| PRK09077 | 536 | L-aspartate oxidase; Provisional | 97.86 | |
| PRK08071 | 510 | L-aspartate oxidase; Provisional | 97.86 | |
| PRK06452 | 566 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.86 | |
| PLN02815 | 594 | L-aspartate oxidase | 97.85 | |
| PRK07190 | 487 | hypothetical protein; Provisional | 97.85 | |
| PRK07190 | 487 | hypothetical protein; Provisional | 97.85 | |
| TIGR00292 | 254 | thiazole biosynthesis enzyme. This enzyme is invol | 97.85 | |
| TIGR01790 | 388 | carotene-cycl lycopene cyclase family protein. Thi | 97.85 | |
| PRK06854 | 608 | adenylylsulfate reductase subunit alpha; Validated | 97.85 | |
| PRK06184 | 502 | hypothetical protein; Provisional | 97.84 | |
| TIGR02061 | 614 | aprA adenosine phosphosulphate reductase, alpha su | 97.84 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 97.83 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 97.83 | |
| PRK06184 | 502 | hypothetical protein; Provisional | 97.83 | |
| PRK07843 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 97.83 | |
| PRK08205 | 583 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.82 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 97.82 | |
| PRK07333 | 403 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 97.82 | |
| PF13454 | 156 | NAD_binding_9: FAD-NAD(P)-binding | 97.81 | |
| TIGR01373 | 407 | soxB sarcosine oxidase, beta subunit family, heter | 97.81 | |
| TIGR03229 | 433 | benzo_1_2_benA benzoate 1,2-dioxygenase, large sub | 97.8 | |
| PRK06134 | 581 | putative FAD-binding dehydrogenase; Reviewed | 97.79 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 97.79 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 97.78 | |
| PF04820 | 454 | Trp_halogenase: Tryptophan halogenase; InterPro: I | 97.78 | |
| PRK05192 | 618 | tRNA uridine 5-carboxymethylaminomethyl modificati | 97.77 | |
| TIGR01373 | 407 | soxB sarcosine oxidase, beta subunit family, heter | 97.77 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 97.76 | |
| PRK05192 | 618 | tRNA uridine 5-carboxymethylaminomethyl modificati | 97.76 | |
| PTZ00383 | 497 | malate:quinone oxidoreductase; Provisional | 97.76 | |
| PRK11728 | 393 | hydroxyglutarate oxidase; Provisional | 97.76 | |
| PRK07608 | 388 | ubiquinone biosynthesis hydroxylase family protein | 97.75 | |
| COG1233 | 487 | Phytoene dehydrogenase and related proteins [Secon | 97.75 | |
| PLN00128 | 635 | Succinate dehydrogenase [ubiquinone] flavoprotein | 97.75 | |
| TIGR00275 | 400 | flavoprotein, HI0933 family. The model when search | 97.74 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 97.74 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 97.73 | |
| PRK05714 | 405 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 97.72 | |
| TIGR03228 | 438 | anthran_1_2_A anthranilate 1,2-dioxygenase, large | 97.72 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 97.71 | |
| COG2509 | 486 | Uncharacterized FAD-dependent dehydrogenases [Gene | 97.7 | |
| PRK07512 | 513 | L-aspartate oxidase; Provisional | 97.7 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 97.7 | |
| PF01946 | 230 | Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K. | 97.69 | |
| PRK07512 | 513 | L-aspartate oxidase; Provisional | 97.69 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 97.69 | |
| PLN00093 | 450 | geranylgeranyl diphosphate reductase; Provisional | 97.69 | |
| COG1635 | 262 | THI4 Ribulose 1,5-bisphosphate synthetase, convert | 97.68 | |
| PRK06134 | 581 | putative FAD-binding dehydrogenase; Reviewed | 97.67 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 97.67 | |
| PRK08244 | 493 | hypothetical protein; Provisional | 97.66 | |
| PRK07608 | 388 | ubiquinone biosynthesis hydroxylase family protein | 97.66 | |
| TIGR02023 | 388 | BchP-ChlP geranylgeranyl reductase. This model rep | 97.65 | |
| TIGR01984 | 382 | UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T | 97.65 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 97.64 | |
| TIGR03329 | 460 | Phn_aa_oxid putative aminophosphonate oxidoreducta | 97.64 | |
| PRK08020 | 391 | ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin | 97.64 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 97.63 | |
| TIGR02028 | 398 | ChlP geranylgeranyl reductase. This model represen | 97.63 | |
| TIGR02023 | 388 | BchP-ChlP geranylgeranyl reductase. This model rep | 97.63 | |
| PF12831 | 428 | FAD_oxidored: FAD dependent oxidoreductase; PDB: 3 | 97.63 | |
| PF01134 | 392 | GIDA: Glucose inhibited division protein A; InterP | 97.62 | |
| COG1232 | 444 | HemY Protoporphyrinogen oxidase [Coenzyme metaboli | 97.62 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 97.62 | |
| PLN00093 | 450 | geranylgeranyl diphosphate reductase; Provisional | 97.62 | |
| PF05834 | 374 | Lycopene_cycl: Lycopene cyclase protein; InterPro: | 97.61 | |
| PRK05868 | 372 | hypothetical protein; Validated | 97.61 | |
| PRK05868 | 372 | hypothetical protein; Validated | 97.61 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 97.61 | |
| TIGR01377 | 380 | soxA_mon sarcosine oxidase, monomeric form. Sarcos | 97.61 | |
| TIGR00275 | 400 | flavoprotein, HI0933 family. The model when search | 97.6 | |
| COG1232 | 444 | HemY Protoporphyrinogen oxidase [Coenzyme metaboli | 97.59 | |
| PLN02612 | 567 | phytoene desaturase | 97.59 | |
| PRK08020 | 391 | ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin | 97.59 | |
| TIGR01789 | 370 | lycopene_cycl lycopene cyclase. This model represe | 97.59 | |
| KOG2415|consensus | 621 | 97.59 | ||
| PRK06753 | 373 | hypothetical protein; Provisional | 97.58 | |
| TIGR01789 | 370 | lycopene_cycl lycopene cyclase. This model represe | 97.57 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 97.57 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 97.56 | |
| PRK06185 | 407 | hypothetical protein; Provisional | 97.56 | |
| TIGR03171 | 321 | soxL2 Rieske iron-sulfur protein SoxL2. This iron- | 97.56 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 97.56 | |
| TIGR01988 | 385 | Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub | 97.55 | |
| PRK08274 | 466 | tricarballylate dehydrogenase; Validated | 97.54 | |
| PRK06481 | 506 | fumarate reductase flavoprotein subunit; Validated | 97.53 | |
| TIGR02734 | 502 | crtI_fam phytoene desaturase. Phytoene is converte | 97.53 | |
| KOG2820|consensus | 399 | 97.52 | ||
| TIGR01377 | 380 | soxA_mon sarcosine oxidase, monomeric form. Sarcos | 97.51 | |
| PF13454 | 156 | NAD_binding_9: FAD-NAD(P)-binding | 97.51 | |
| PRK08013 | 400 | oxidoreductase; Provisional | 97.51 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 97.51 | |
| PLN02661 | 357 | Putative thiazole synthesis | 97.51 | |
| PRK11445 | 351 | putative oxidoreductase; Provisional | 97.5 | |
| KOG1671|consensus | 210 | 97.5 | ||
| PRK06185 | 407 | hypothetical protein; Provisional | 97.49 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 97.48 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 97.48 | |
| PRK06183 | 538 | mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va | 97.47 | |
| PF05834 | 374 | Lycopene_cycl: Lycopene cyclase protein; InterPro: | 97.47 | |
| COG3380 | 331 | Predicted NAD/FAD-dependent oxidoreductase [Genera | 97.46 | |
| PLN02612 | 567 | phytoene desaturase | 97.45 | |
| PRK08132 | 547 | FAD-dependent oxidoreductase; Provisional | 97.45 | |
| PRK06617 | 374 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 97.45 | |
| PRK11259 | 376 | solA N-methyltryptophan oxidase; Provisional | 97.44 | |
| TIGR02028 | 398 | ChlP geranylgeranyl reductase. This model represen | 97.44 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 97.43 | |
| TIGR01320 | 483 | mal_quin_oxido malate:quinone-oxidoreductase. This | 97.42 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 97.42 | |
| TIGR02731 | 453 | phytoene_desat phytoene desaturase. Plants and cya | 97.41 | |
| PRK11259 | 376 | solA N-methyltryptophan oxidase; Provisional | 97.41 | |
| TIGR02731 | 453 | phytoene_desat phytoene desaturase. Plants and cya | 97.41 | |
| PRK08243 | 392 | 4-hydroxybenzoate 3-monooxygenase; Validated | 97.4 | |
| PRK08274 | 466 | tricarballylate dehydrogenase; Validated | 97.4 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 97.4 | |
| PF00890 | 417 | FAD_binding_2: FAD binding domain of the Pfam fami | 97.4 | |
| PRK06183 | 538 | mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va | 97.4 | |
| TIGR03364 | 365 | HpnW_proposed FAD dependent oxidoreductase TIGR033 | 97.39 | |
| PRK13339 | 497 | malate:quinone oxidoreductase; Reviewed | 97.39 | |
| PRK06481 | 506 | fumarate reductase flavoprotein subunit; Validated | 97.39 | |
| TIGR03364 | 365 | HpnW_proposed FAD dependent oxidoreductase TIGR033 | 97.38 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 97.38 | |
| PTZ00383 | 497 | malate:quinone oxidoreductase; Provisional | 97.38 | |
| PRK06126 | 545 | hypothetical protein; Provisional | 97.37 | |
| PRK05257 | 494 | malate:quinone oxidoreductase; Validated | 97.36 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 97.36 | |
| PRK08850 | 405 | 2-octaprenyl-6-methoxyphenol hydroxylase; Validate | 97.36 | |
| PRK05257 | 494 | malate:quinone oxidoreductase; Validated | 97.35 | |
| COG0445 | 621 | GidA Flavin-dependent tRNA uridine 5-carboxymethyl | 97.33 | |
| COG2907 | 447 | Predicted NAD/FAD-binding protein [General functio | 97.32 | |
| PRK11445 | 351 | putative oxidoreductase; Provisional | 97.3 | |
| PRK06996 | 398 | hypothetical protein; Provisional | 97.3 |
| >KOG1336|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-64 Score=557.49 Aligned_cols=466 Identities=41% Similarity=0.705 Sum_probs=419.2
Q ss_pred CCCccccceeecCCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEEEcchhhhhccccCCCccccCCCCC
Q psy2951 987 HYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQARKDELKNKKRKLPMAKLSSGNK 1066 (1466)
Q Consensus 987 h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 1066 (1466)
|+|+||.+|.+..+++.|||||+|||+.+|++++.|++++| +.+.+++++++.................+. ...
T Consensus 1 hygapl~~g~~s~g~v~cpwhgacfn~~~gdiedfP~~~sl--~~v~~~~~~~~m~~~~~~~~~~~~~~~~~g----~~a 74 (478)
T KOG1336|consen 1 HYGAPLAKGVLSRGRVRCPWHGACFNLSTGDIEDFPGLDSL--SRVVVDNDGQVMQEEKRFKLVIVGGGVAAG----YAA 74 (478)
T ss_pred CCCcchhhccccCCcccccccceeecCCcCchhhCcCccce--eeEEecCccceeeeccceeeeeeccccccc----ccc
Confidence 89999999999999999999999999999999999999998 777777788777643332222221111111 345
Q ss_pred CcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhccCcccccccChhhhccCCcEEEcCCeEEEee
Q psy2951 1067 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDS 1146 (1466)
Q Consensus 1067 ~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~ 1146 (1466)
++++|||+|++|..|+.+||+.++..+++|+.++.++||+|+.|++......+.+..+..+||++.+|++++++.|+.+
T Consensus 75 r~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~v~~~- 153 (478)
T KOG1336|consen 75 RHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRARLSKFLLTVGEGLAKRTPEFYKEKGIELILGTSVVKA- 153 (478)
T ss_pred ceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchhcccceeeccccccccChhhHhhcCceEEEcceeEEe-
Confidence 7899999999999999999999999999999999999999999999998788888899999999999999999999999
Q ss_pred cCCCCeEEecCCcEEecCeEEEecCCCCCcCCCCCCCC--cEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHHH
Q psy2951 1147 ELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFC 1224 (1466)
Q Consensus 1147 d~~~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~--~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l 1224 (1466)
|...++|.+.+|+.+.|++|+||||+.++.+++| |.+ +++++|..+|+.++...+..+++|+++|+|++|+|+|++|
T Consensus 154 D~~~K~l~~~~Ge~~kys~LilATGs~~~~l~~p-G~~~~nv~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l 232 (478)
T KOG1336|consen 154 DLASKTLVLGNGETLKYSKLIIATGSSAKTLDIP-GVELKNVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAAL 232 (478)
T ss_pred eccccEEEeCCCceeecceEEEeecCccccCCCC-CccccceeeeccHHHHHHHHHHhccCceEEEECchHHHHHHHHHH
Confidence 9999999999999999999999999999999999 988 9999999999999998888899999999999999999999
Q ss_pred hcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccc
Q psy2951 1225 ASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTV 1304 (1466)
Q Consensus 1225 ~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~ 1304 (1466)
+..+.+||++++.+.++.+.+++.+.+.+...++++||+|++++.+.+++...+|++..|.+.||++++||+||+++|..
T Consensus 233 ~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~ 312 (478)
T KOG1336|consen 233 VSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIK 312 (478)
T ss_pred HhcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccc
Confidence 99999999999999999999999999999999999999999999999998556689999999999999999999999999
Q ss_pred cCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHH--hcCCCCCCC
Q psy2951 1305 LNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALN--MVEKKTSLS 1382 (1466)
Q Consensus 1305 p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~--i~g~~~~~~ 1382 (1466)
|++.+++. |..++..|+|.||+++||++|+|||+||++++|...+ +...+++||+.|+.+|+.|... +..... +.
T Consensus 313 p~t~~~~~-g~~~~~~G~i~V~~~f~t~~~~VyAiGDva~fp~~~~-~~~~~v~H~~~A~~~g~~av~ai~~~~~~~-~~ 389 (478)
T KOG1336|consen 313 PNTSFLEK-GILLDSKGGIKVDEFFQTSVPNVYAIGDVATFPLKGY-GEDRRVEHVDHARASGRQAVKAIKMAPQDA-YD 389 (478)
T ss_pred cccccccc-cceecccCCEeehhceeeccCCcccccceeecccccc-cccccchHHHHHHHHHHhhhhhhhccCccc-cc
Confidence 99999997 8888999999999999999999999999999998774 4444599999999999955444 444333 78
Q ss_pred CCccceeccccccEEEEeeCCCCceEEEcCCcCCceEEEEEEeCCEEEEEEEecCcHHHHHHHHHHHcCCCCChhcc---
Q psy2951 1383 TIPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTVGMDPLAAQFAERIKMQKYIQKDQI--- 1459 (1466)
Q Consensus 1383 ~~p~~w~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 1459 (1466)
.+|||||..|+..+|+.|++ +.++++.|+.+...|+.||++.+++..++..|.+....++.+++++++.+..-++
T Consensus 390 ~lPyf~t~~f~~~~~~~G~g--~~~~v~~G~~e~~~f~ay~~k~~~v~a~~~~g~~~~~~~~a~l~~~~~~v~~~~~~~~ 467 (478)
T KOG1336|consen 390 YLPYFYTRFFSLSWRFAGDG--VGDVVLFGDLEPGSFGAYWIKGDKVGAVAEGGRDEEVSQFAKLARQGPEVTSLKLLSK 467 (478)
T ss_pred ccchHHHHHhhhhccccCcC--ccceeeecccccccceeeEeeccEEEEEeccCCChHHHHHHHHHhcCCcchhhhhccc
Confidence 99999999999999999998 6888999999988999999997788888889999999999999999999988444
Q ss_pred -cccCcC
Q psy2951 1460 -ENNAWA 1465 (1466)
Q Consensus 1460 -~~~~~~ 1465 (1466)
.++.|+
T Consensus 468 ~~~~~~~ 474 (478)
T KOG1336|consen 468 SGDSFWL 474 (478)
T ss_pred cchhhHH
Confidence 666664
|
|
| >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-56 Score=530.55 Aligned_cols=388 Identities=25% Similarity=0.415 Sum_probs=351.2
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhc--cCcccccccChhhhccCCcEEEcCCeEE
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD--IKADSILLRTEEFYKDNDIHVIKGKKII 1143 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 1143 (1466)
.++|||||||+||++||..||+.+++++|+||+++++.||.++++++.+. ...+...+...+++.+.+|+++.+++|.
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~ 82 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK 82 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence 45899999999999999999999999999999999999999999998653 2223334556678888999999999999
Q ss_pred EeecCCCCeEEecCCcEEecCeEEEecCCCCCcCCCCCCCC--cEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHH
Q psy2951 1144 SDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA 1221 (1466)
Q Consensus 1144 ~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~--~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a 1221 (1466)
.+ |+..+.|.+++|.++.||+||||||++|+.++++ +.. +++++++.+|+.++++.+..+++++|||+|++|+|+|
T Consensus 83 ~i-d~~~~~v~~~~g~~~~yd~LViATGs~~~~~p~~-~~~~~~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A 160 (396)
T PRK09754 83 TL-GRDTRELVLTNGESWHWDQLFIATGAAARPLPLL-DALGERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELA 160 (396)
T ss_pred EE-ECCCCEEEECCCCEEEcCEEEEccCCCCCCCCCC-CcCCCCEEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHH
Confidence 99 9999999999999999999999999999888776 543 7999999999999998888899999999999999999
Q ss_pred HHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEee
Q psy2951 1222 AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 1301 (1466)
Q Consensus 1222 ~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~ 1301 (1466)
..|++.|.+||++++.+.++.+.+++.+.+.+.+.++++||++++++++++++ . + ....+.+.+|+++++|+||+++
T Consensus 161 ~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~-~-~-~~~~v~l~~g~~i~aD~Vv~a~ 237 (396)
T PRK09754 161 ASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVV-D-G-EKVELTLQSGETLQADVVIYGI 237 (396)
T ss_pred HHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEE-c-C-CEEEEEECCCCEEECCEEEECC
Confidence 99999999999999999988877889999999999999999999999999998 3 2 3345788999999999999999
Q ss_pred ccccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCCCCCC
Q psy2951 1302 GTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSL 1381 (1466)
Q Consensus 1302 G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~~~~ 1381 (1466)
|..|+++|++.+|+..+ ++|.||++++|++|+|||+|||+.++.. .|...+.++|++|..||++||+||+|...+|
T Consensus 238 G~~pn~~l~~~~gl~~~--~gi~vd~~~~ts~~~IyA~GD~a~~~~~--~g~~~~~~~~~~A~~qg~~aa~ni~g~~~~~ 313 (396)
T PRK09754 238 GISANDQLAREANLDTA--NGIVIDEACRTCDPAIFAGGDVAITRLD--NGALHRCESWENANNQAQIAAAAMLGLPLPL 313 (396)
T ss_pred CCChhhHHHHhcCCCcC--CCEEECCCCccCCCCEEEccceEeeeCC--CCCEEEECcHHHHHHHHHHHHHHhcCCCCCC
Confidence 99999999888888764 4599999999999999999999988765 4777899999999999999999999998899
Q ss_pred CCCccceeccccccEEEEeeCCCCceEEEcCCcCCceEEEEEEeCCEEEEEEEecCcHHHHHHHHHHHcCCCCChhcccc
Q psy2951 1382 STIPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTVGMDPLAAQFAERIKMQKYIQKDQIEN 1461 (1466)
Q Consensus 1382 ~~~p~~w~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1461 (1466)
..+|||||+|||.++|++|.... ++++++|+++...|+.||+++|+|+|++++|+++++..++++|+++.+++++.|+|
T Consensus 314 ~~~p~~~~~~~~~~~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (396)
T PRK09754 314 LPPPWFWSDQYSDNLQFIGDMRG-DDWLCRGNPETQKAIWFNLQNGVLIGAVTLNQGREIRPIRKWIQSGKTFDAKLLID 392 (396)
T ss_pred CCCCceEEEeCCccEEEeeCCCC-CEEEEecCCCCceEEEEEeeCCEEEEEEEECCHHHHHHHHHHHHCCCCCCHHHhcC
Confidence 99999999999999999998764 78888998888889999999999999999999999999999999999999999977
Q ss_pred cC
Q psy2951 1462 NA 1463 (1466)
Q Consensus 1462 ~~ 1463 (1466)
..
T Consensus 393 ~~ 394 (396)
T PRK09754 393 EN 394 (396)
T ss_pred cc
Confidence 64
|
|
| >KOG1336|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-51 Score=456.45 Aligned_cols=445 Identities=42% Similarity=0.720 Sum_probs=389.6
Q ss_pred CCCcccCCceecCCEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCeEEEEEcccchhccccccccccccCCCCC
Q psy2951 516 HYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQARKDELKNKKRKLPMAKLSSGNK 595 (1466)
Q Consensus 516 H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (1466)
|.|+||..|.+..++++|||||.+|+.++|.+.+-|+...| ..+..+++..+.............+.. ......
T Consensus 1 hygapl~~g~~s~g~v~cpwhgacfn~~~gdiedfP~~~sl--~~v~~~~~~~~m~~~~~~~~~~~~~~~----~~g~~a 74 (478)
T KOG1336|consen 1 HYGAPLAKGVLSRGRVRCPWHGACFNLSTGDIEDFPGLDSL--SRVVVDNDGQVMQEEKRFKLVIVGGGV----AAGYAA 74 (478)
T ss_pred CCCcchhhccccCCcccccccceeecCCcCchhhCcCccce--eeEEecCccceeeeccceeeeeecccc----cccccc
Confidence 89999999999999999999999999999999999999998 555555555544322211111111111 111446
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcccCcccccccCHhHhhhCCcEEEEceEEEEec
Q psy2951 596 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDS 675 (1466)
Q Consensus 596 ~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~ 675 (1466)
+.++|||||++|..|+.++++.|+...++++.++.++||.++.+++........+..+..+++++.+|+++++++|+.+
T Consensus 75 r~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~v~~~- 153 (478)
T KOG1336|consen 75 RHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRARLSKFLLTVGEGLAKRTPEFYKEKGIELILGTSVVKA- 153 (478)
T ss_pred ceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchhcccceeeccccccccChhhHhhcCceEEEcceeEEe-
Confidence 8999999999999999999999999999999999999999999998888888888899999999999999999999999
Q ss_pred cccccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCC--cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHH
Q psy2951 676 ELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFC 753 (1466)
Q Consensus 676 ~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l 753 (1466)
|...+++.+.+|+.+.|++++||||+.++.|++| |.+ ++.++++++++..+...+..+++|+++|+|++|+|+|..|
T Consensus 154 D~~~K~l~~~~Ge~~kys~LilATGs~~~~l~~p-G~~~~nv~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l 232 (478)
T KOG1336|consen 154 DLASKTLVLGNGETLKYSKLIIATGSSAKTLDIP-GVELKNVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAAL 232 (478)
T ss_pred eccccEEEeCCCceeecceEEEeecCccccCCCC-CccccceeeeccHHHHHHHHHHhccCceEEEECchHHHHHHHHHH
Confidence 9999999999999999999999999999999999 887 9999999999998888888899999999999999999999
Q ss_pred hccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccc
Q psy2951 754 ASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTV 833 (1466)
Q Consensus 754 ~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 833 (1466)
...+++||++++.+.++.+.+.+.+.+.++++++++||+++.++.+.+++...++++..|.+.+++++++|+||+.+|.+
T Consensus 233 ~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~ 312 (478)
T KOG1336|consen 233 VSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIK 312 (478)
T ss_pred HhcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccc
Confidence 99999999999999999889999999999999999999999999999999888889999999999999999999999999
Q ss_pred cCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhc--cCCCcCc
Q psy2951 834 LNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMV--EKKTSLS 911 (1466)
Q Consensus 834 p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~--~~~~~~~ 911 (1466)
|++.+++. +..+++.|+|.||+.+||++|+|||+||++++|...+..... ++|++.|+.+|+.+...|. .... +.
T Consensus 313 p~t~~~~~-g~~~~~~G~i~V~~~f~t~~~~VyAiGDva~fp~~~~~~~~~-v~H~~~A~~~g~~av~ai~~~~~~~-~~ 389 (478)
T KOG1336|consen 313 PNTSFLEK-GILLDSKGGIKVDEFFQTSVPNVYAIGDVATFPLKGYGEDRR-VEHVDHARASGRQAVKAIKMAPQDA-YD 389 (478)
T ss_pred cccccccc-cceecccCCEeehhceeeccCCcccccceeeccccccccccc-chHHHHHHHHHHhhhhhhhccCccc-cc
Confidence 99999987 888999999999999999999999999999999987665555 8999999999997666554 3333 77
Q ss_pred ccCeeeeeecCceeEEeeccCCCCceeEecccccceEEEEEecCCeEEEEEeecCchhhhhh
Q psy2951 912 TIPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTVGMDPLAAQF 973 (1466)
Q Consensus 912 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~g~~~~~~~~ 973 (1466)
.+||||+..|+..+++.|.+ +.+....++.+...|..|+.+.+++......+.+.....+
T Consensus 390 ~lPyf~t~~f~~~~~~~G~g--~~~~v~~G~~e~~~f~ay~~k~~~v~a~~~~g~~~~~~~~ 449 (478)
T KOG1336|consen 390 YLPYFYTRFFSLSWRFAGDG--VGDVVLFGDLEPGSFGAYWIKGDKVGAVAEGGRDEEVSQF 449 (478)
T ss_pred ccchHHHHHhhhhccccCcC--ccceeeecccccccceeeEeeccEEEEEeccCCChHHHHH
Confidence 99999999999998998887 6778888888888899999996666666666666555444
|
|
| >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=424.41 Aligned_cols=368 Identities=26% Similarity=0.427 Sum_probs=315.3
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhc-c-cCcccccccCHhHhhhCCcEEEEceEEE
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL-D-IKADSILLRTEEFYKDNDIHVIKGKKII 672 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~gv~~~~~~~v~ 672 (1466)
.++|||||||+||++||..|+++|++.+|++++++++.+|.++.+++.+ . ...+.......+++.+.+|+++.++.|.
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~ 82 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK 82 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence 4689999999999999999999999999999999999999887776533 2 1222223334567788899999998899
Q ss_pred EeccccccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCC--cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHH
Q psy2951 673 SDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA 750 (1466)
Q Consensus 673 ~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A 750 (1466)
.+ |...+.+.++++.++.||+||||||++|+.++++ +.. +++++++.+++..+.+.+..+++++|||+|++|+|+|
T Consensus 83 ~i-d~~~~~v~~~~g~~~~yd~LViATGs~~~~~p~~-~~~~~~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A 160 (396)
T PRK09754 83 TL-GRDTRELVLTNGESWHWDQLFIATGAAARPLPLL-DALGERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELA 160 (396)
T ss_pred EE-ECCCCEEEECCCCEEEcCEEEEccCCCCCCCCCC-CcCCCCEEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHH
Confidence 99 8888999998899999999999999999888776 432 7888889999988887777789999999999999999
Q ss_pred HHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEcc
Q psy2951 751 AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 830 (1466)
Q Consensus 751 ~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~ 830 (1466)
..|++.|.+||++++.+.++...++++..+.+.+.++++||++++++++++++. ++ ...+.+.+|+++++|.||+++
T Consensus 161 ~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~--~~-~~~v~l~~g~~i~aD~Vv~a~ 237 (396)
T PRK09754 161 ASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVD--GE-KVELTLQSGETLQADVVIYGI 237 (396)
T ss_pred HHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEc--CC-EEEEEECCCCEEECCEEEECC
Confidence 999999999999999998876667888889999999999999999999999983 22 235678889999999999999
Q ss_pred ccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCCcC
Q psy2951 831 GTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSL 910 (1466)
Q Consensus 831 G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~~~ 910 (1466)
|.+|++.+++..|+..+ +.|.||++++|+.|+|||+|||+..+.. .+...++++|+.|..||++||+||++...++
T Consensus 238 G~~pn~~l~~~~gl~~~--~gi~vd~~~~ts~~~IyA~GD~a~~~~~--~g~~~~~~~~~~A~~qg~~aa~ni~g~~~~~ 313 (396)
T PRK09754 238 GISANDQLAREANLDTA--NGIVIDEACRTCDPAIFAGGDVAITRLD--NGALHRCESWENANNQAQIAAAAMLGLPLPL 313 (396)
T ss_pred CCChhhHHHHhcCCCcC--CCEEECCCCccCCCCEEEccceEeeeCC--CCCEEEECcHHHHHHHHHHHHHHhcCCCCCC
Confidence 99999988888888764 5699999999999999999999987654 4666778999999999999999999998889
Q ss_pred cccCeeeeeecCceeEEeeccCCCCceeEecccccceEEEEEecCCeEEEEEeecCchhhhh
Q psy2951 911 STIPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTVGMDPLAAQ 972 (1466)
Q Consensus 911 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~g~~~~~~~ 972 (1466)
+.+||||+.+|+.++++.|.... ++....++.+...|..++.++|+++|+..+|.......
T Consensus 314 ~~~p~~~~~~~~~~~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 374 (396)
T PRK09754 314 LPPPWFWSDQYSDNLQFIGDMRG-DDWLCRGNPETQKAIWFNLQNGVLIGAVTLNQGREIRP 374 (396)
T ss_pred CCCCceEEEeCCccEEEeeCCCC-CEEEEecCCCCceEEEEEeeCCEEEEEEEECCHHHHHH
Confidence 99999999999999999997654 55556666666778888888999999999998765443
|
|
| >TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=452.86 Aligned_cols=374 Identities=22% Similarity=0.354 Sum_probs=327.2
Q ss_pred EEEECCchHHHHHHHHHHhcC-CCCcEEEEcCCCCCCCCCCCCchhhc--cCcccccccChhhhccCCcEEEcCCeEEEe
Q psy2951 1069 FIVVGGGPSGATCVETLRQNG-FTGKLYFITDENFLPYDRVKLSKQLD--IKADSILLRTEEFYKDNDIHVIKGKKIISD 1145 (1466)
Q Consensus 1069 vvIVG~G~aGl~aA~~L~~~g-~~~~i~li~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i 1145 (1466)
|||||+|+||+++|.+|++.+ ...+||||+++++++|.|+.|+..+. .+.+++.+...+++++++|+++++++|+.|
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I 80 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI 80 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence 699999999999999999876 34599999999999999999998765 355667777888999999999999999999
Q ss_pred ecCCCCeEEecCCcEEecCeEEEecCCCCCcCCCCCCCC--cEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHH
Q psy2951 1146 SELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAF 1223 (1466)
Q Consensus 1146 ~d~~~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~--~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~ 1223 (1466)
|+.+++|.+.+|.++.||+||||||+.|+.|++| |.+ +++++++++|+.++++.+..+++++|||+|++|+|+|..
T Consensus 81 -d~~~k~V~~~~g~~~~yD~LVlATGs~p~~p~ip-G~~~~~v~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~ 158 (785)
T TIGR02374 81 -DTDQKQVITDAGRTLSYDKLILATGSYPFILPIP-GADKKGVYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVG 158 (785)
T ss_pred -ECCCCEEEECCCcEeeCCEEEECCCCCcCCCCCC-CCCCCCEEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHH
Confidence 9999999999999999999999999999999999 877 899999999999999888889999999999999999999
Q ss_pred HhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeecc
Q psy2951 1224 CASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGT 1303 (1466)
Q Consensus 1224 l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~ 1303 (1466)
|++.|.+|+++++.+.++.+.+++..++.+.+.++++||+++++..++++. .++....|.+.||+++++|+||+++|.
T Consensus 159 L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~--~~~~~~~v~~~dG~~i~~D~Vi~a~G~ 236 (785)
T TIGR02374 159 LQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIV--GATKADRIRFKDGSSLEADLIVMAAGI 236 (785)
T ss_pred HHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEE--cCCceEEEEECCCCEEEcCEEEECCCC
Confidence 999999999999999999888999999999999999999999999999997 344677789999999999999999999
Q ss_pred ccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCCC-CCCC
Q psy2951 1304 VLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK-TSLS 1382 (1466)
Q Consensus 1304 ~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~-~~~~ 1382 (1466)
.|++++++.+|+.++ |+|+||++|+|++|+|||+|||+.++... ...|..|..||++||.||+|.. .+|.
T Consensus 237 ~Pn~~la~~~gl~~~--ggI~Vd~~~~Ts~p~IyA~GD~a~~~~~~-------~gl~~~a~~qa~vaA~ni~g~~~~~~~ 307 (785)
T TIGR02374 237 RPNDELAVSAGIKVN--RGIIVNDSMQTSDPDIYAVGECAEHNGRV-------YGLVAPLYEQAKVLADHICGVECEEYE 307 (785)
T ss_pred CcCcHHHHhcCCccC--CCEEECCCcccCCCCEEEeeecceeCCcc-------cccHHHHHHHHHHHHHHhcCCCCcCCC
Confidence 999999998999876 46999999999999999999999887643 2357889999999999999987 6777
Q ss_pred CCccce-eccccccEEEEeeCCCCc--eEEEcCCcCCceEEEEEEeCCEEEEEEEecCcHHHHHHHHHHHcCCCCC
Q psy2951 1383 TIPFFW-TMLFGVGFRFAGYAAGHT--QVDIVGDLEALKFTAYYSNADKVLAILTVGMDPLAAQFAERIKMQKYIQ 1455 (1466)
Q Consensus 1383 ~~p~~w-~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1455 (1466)
..+... ...+|..+-..|.....+ +.+...+..+..|.++++++|+|+|++++|+..+...++.+++++..++
T Consensus 308 ~~~~~~~lk~~g~~v~s~G~~~~~~~~~~~~~~d~~~~~y~kl~~~~~rLlGavlvgd~~~~~~L~~li~~~~~l~ 383 (785)
T TIGR02374 308 GSDLSAKLKLLGVDVWSAGDAQETERTTSIKIYDEQKGIYKKLVLSDDKLLGAVLFGDTSDYGRLLDMVLKQADIS 383 (785)
T ss_pred CCccceEEEECCcceEecccCCCCCCcEEEEEEcCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHcCCCCC
Confidence 666443 346777777777543222 2222235556779999999999999999999999999999999886554
|
|
| >PRK14989 nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-43 Score=443.57 Aligned_cols=379 Identities=21% Similarity=0.296 Sum_probs=321.0
Q ss_pred CcEEEECCchHHHHHHHHHHhcCC--CCcEEEEcCCCCCCCCCCCCchhhc-cCcccccccChhhhccCCcEEEcCCeEE
Q psy2951 1067 DTFIVVGGGPSGATCVETLRQNGF--TGKLYFITDENFLPYDRVKLSKQLD-IKADSILLRTEEFYKDNDIHVIKGKKII 1143 (1466)
Q Consensus 1067 ~~vvIVG~G~aGl~aA~~L~~~g~--~~~i~li~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 1143 (1466)
++|||||+|+||+.+|..|++.+. ..+||||+++++++|+|..|+..+. ...+++.....+++++++|+++.+++|+
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V~ 83 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERAI 83 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEEE
Confidence 489999999999999999987642 3599999999999999999999876 4556666777789999999999999999
Q ss_pred EeecCCCCeEEecCCcEEecCeEEEecCCCCCcCCCCCCCC--cEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHH
Q psy2951 1144 SDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA 1221 (1466)
Q Consensus 1144 ~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~--~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a 1221 (1466)
.| |+..+.|.+.+|.++.||+||||||+.|+.|++| |.+ +++++++++++.++++....+++++|||+|++|+|+|
T Consensus 84 ~I-d~~~~~V~~~~G~~i~yD~LVIATGs~p~~p~ip-G~~~~~v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A 161 (847)
T PRK14989 84 TI-NRQEKVIHSSAGRTVFYDKLIMATGSYPWIPPIK-GSETQDCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAA 161 (847)
T ss_pred EE-eCCCcEEEECCCcEEECCEEEECCCCCcCCCCCC-CCCCCCeEEECCHHHHHHHHHHHhcCCeEEEECCCHHHHHHH
Confidence 99 9999999999999999999999999999999999 877 7999999999999988888899999999999999999
Q ss_pred HHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEee
Q psy2951 1222 AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 1301 (1466)
Q Consensus 1222 ~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~ 1301 (1466)
..|++.|.+|+++++.++++++.++++.++.+.+.++++||+++++..++++...+.+....+.+.||+++++|+||+++
T Consensus 162 ~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~ 241 (847)
T PRK14989 162 GALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFST 241 (847)
T ss_pred HHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECC
Confidence 99999999999999999988888999999999999999999999999999997222234667889999999999999999
Q ss_pred ccccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCCCCCC
Q psy2951 1302 GTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSL 1381 (1466)
Q Consensus 1302 G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~~~~ 1381 (1466)
|.+|++++++.+|+.++.+|+|.||++|+|++|+|||+|||+.++... ...|..|..||++||.||+|...+|
T Consensus 242 G~rPn~~L~~~~Gl~~~~~G~I~VD~~l~Ts~p~IYAiGD~a~~~~~~-------~gl~~~a~~~a~vaa~~i~g~~~~~ 314 (847)
T PRK14989 242 GIRPQDKLATQCGLAVAPRGGIVINDSCQTSDPDIYAIGECASWNNRV-------FGLVAPGYKMAQVAVDHLLGSENAF 314 (847)
T ss_pred CcccCchHHhhcCccCCCCCcEEECCCCcCCCCCEEEeecceeEcCcc-------cccHHHHHHHHHHHHHHhcCCCcCC
Confidence 999999999999999998899999999999999999999999886543 2357899999999999999987666
Q ss_pred CCCccc-eeccccccEEEEeeCCCCc----eEEEcCCcCCceEEEEEEe--CCEEEEEEEecCcHHHHHHHHHHHcCCCC
Q psy2951 1382 STIPFF-WTMLFGVGFRFAGYAAGHT----QVDIVGDLEALKFTAYYSN--ADKVLAILTVGMDPLAAQFAERIKMQKYI 1454 (1466)
Q Consensus 1382 ~~~p~~-w~~~~~~~~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1454 (1466)
...... -...+|..+-..|...+.+ ..... +.....|.+++++ +++|+|+.++|+..+...+..++..+..+
T Consensus 315 ~g~~~~~~lk~~G~~v~s~G~~~~~~~~~~~~~~~-~~~~~~y~Klv~~~~~~~LlGa~lvGd~~~~~~l~~~~~~~~~l 393 (847)
T PRK14989 315 EGADLSAKLKLLGVDVGGIGDAHGRTPGARSYVYL-DESKEIYKRLIVSEDNKTLLGAVLVGDTSDYGNLLQLVLNAIEL 393 (847)
T ss_pred CCcccceEEEECCcceEecccccCCCCCceeEEEE-cCCCCEEEEEEEECCCCEEEEEEEECCHHHHHHHHHHHHcCCCC
Confidence 543222 2235566555555322221 22222 2235667777775 46999999999999889989988777555
Q ss_pred C
Q psy2951 1455 Q 1455 (1466)
Q Consensus 1455 ~ 1455 (1466)
+
T Consensus 394 ~ 394 (847)
T PRK14989 394 P 394 (847)
T ss_pred c
Confidence 3
|
|
| >PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-43 Score=414.38 Aligned_cols=358 Identities=22% Similarity=0.296 Sum_probs=306.6
Q ss_pred CcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhc--cCccccccc-ChhhhccCCcEEEcCCeEE
Q psy2951 1067 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD--IKADSILLR-TEEFYKDNDIHVIKGKKII 1143 (1466)
Q Consensus 1067 ~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~--~~~~~~~~~-~~~~~~~~~v~~~~~~~v~ 1143 (1466)
++|||||||+||+++|..||+.+.+.+||||+++++.+|.+|.++..+. ...+++... ..+++++++++++.+++|+
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 82 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWVT 82 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEEE
Confidence 5899999999999999999999888999999999999999998887765 233444333 3467788899999999999
Q ss_pred EeecCCCCeEEecCCcEEecCeEEEecCCCCCcCCCCCCCCcEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHH
Q psy2951 1144 SDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAF 1223 (1466)
Q Consensus 1144 ~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~ 1223 (1466)
.+ |++.+.|.+ ++..+.||+||||||++|+.|+++ |.+.++.+++++++.++++.+..+++++|||+|++|+|+|..
T Consensus 83 ~i-d~~~~~v~~-~~~~~~yd~LVlATG~~~~~p~i~-G~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~ 159 (377)
T PRK04965 83 DI-DAEAQVVKS-QGNQWQYDKLVLATGASAFVPPIP-GRELMLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMD 159 (377)
T ss_pred EE-ECCCCEEEE-CCeEEeCCEEEECCCCCCCCCCCC-CCceEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHH
Confidence 99 999888887 566899999999999999999999 877788889999998888888788999999999999999999
Q ss_pred HhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeecc
Q psy2951 1224 CASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGT 1303 (1466)
Q Consensus 1224 l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~ 1303 (1466)
|++.|.+|+++++.+.++.+.+++.+...+.+.+++.||++++++++++++ .++ ....+.+.+|+++++|+||+|+|.
T Consensus 160 L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~-~~~-~~~~v~~~~g~~i~~D~vI~a~G~ 237 (377)
T PRK04965 160 LCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLE-KTD-SGIRATLDSGRSIEVDAVIAAAGL 237 (377)
T ss_pred HHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEE-ccC-CEEEEEEcCCcEEECCEEEECcCC
Confidence 999999999999999888877888999999999999999999999999998 333 344578899999999999999999
Q ss_pred ccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCCCCCCCC
Q psy2951 1304 VLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSLST 1383 (1466)
Q Consensus 1304 ~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~~~~~~ 1383 (1466)
.|++++++.+|+..+ +| +.||++++|+.|+|||+|||+..+.. ....|..|..||++||+||+|...+|..
T Consensus 238 ~p~~~l~~~~gl~~~-~g-i~vd~~l~ts~~~VyA~GD~a~~~~~-------~~~~~~~a~~~g~~~a~n~~g~~~~~~~ 308 (377)
T PRK04965 238 RPNTALARRAGLAVN-RG-IVVDSYLQTSAPDIYALGDCAEINGQ-------VLPFLQPIQLSAMALAKNLLGQNTPLKL 308 (377)
T ss_pred CcchHHHHHCCCCcC-CC-EEECCCcccCCCCEEEeeecEeECCc-------eeehHHHHHHHHHHHHHHhcCCCccccc
Confidence 999999998999876 44 99999999999999999999987542 2456888999999999999998888887
Q ss_pred Ccccee-ccccccEEEEeeCCCCc-eEEEcCCcCCceEEEEEEeCCEEEEEEEecCcH
Q psy2951 1384 IPFFWT-MLFGVGFRFAGYAAGHT-QVDIVGDLEALKFTAYYSNADKVLAILTVGMDP 1439 (1466)
Q Consensus 1384 ~p~~w~-~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1439 (1466)
.+..++ ..++..+..+|.....+ .+.+. +.+++.|.+++++||+|+|++++|+..
T Consensus 309 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~g~~~~g~~~ 365 (377)
T PRK04965 309 PAMLVKVKTPELPLQLAGETQRQDLRWQIN-AESQGMVAKGVDEAGQLRAFVVSEDRM 365 (377)
T ss_pred CCccEEEecCceeeEECCCCCCCCceEEEE-eCCCCeEEEEEccCCcEEEEEEEChhH
Confidence 665544 47899999999865333 23332 234567888888999999999999854
|
|
| >COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=400.55 Aligned_cols=379 Identities=23% Similarity=0.357 Sum_probs=335.8
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCC-CCcEEEEcCCCCCCCCCCCCchhhc--cCcccccccChhhhccCCcEEEcCCeE
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGF-TGKLYFITDENFLPYDRVKLSKQLD--IKADSILLRTEEFYKDNDIHVIKGKKI 1142 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~-~~~i~li~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~v 1142 (1466)
..++||||.|+||..+...|.+... .-+||++..|+++.|+|..|+..+. .+.+++.+...+||++++|+++.+.+|
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v 82 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKV 82 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCee
Confidence 4689999999999999999988432 2499999999999999999999986 678888899999999999999999999
Q ss_pred EEeecCCCCeEEecCCcEEecCeEEEecCCCCCcCCCCCCCC--cEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHH
Q psy2951 1143 ISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEA 1220 (1466)
Q Consensus 1143 ~~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~--~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~ 1220 (1466)
+.| |+.+|.|.++.|..+.||+||+||||.|+.+|+| |.+ +++.+|+.+|..++.+..+..++.+|||+|..|+|+
T Consensus 83 ~~i-dr~~k~V~t~~g~~~~YDkLilATGS~pfi~PiP-G~~~~~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEa 160 (793)
T COG1251 83 IQI-DRANKVVTTDAGRTVSYDKLIIATGSYPFILPIP-GSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEA 160 (793)
T ss_pred EEe-ccCcceEEccCCcEeecceeEEecCccccccCCC-CCCCCCeeEEecHHHHHHHHHHHhccCCcEEEccchhhhHH
Confidence 999 9999999999999999999999999999999999 988 999999999999998886667888999999999999
Q ss_pred HHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEe
Q psy2951 1221 AAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVG 1300 (1466)
Q Consensus 1221 a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a 1300 (1466)
|..|...|.+++++.-.+.+|++++++..++.|++.+++.|++++++...+++. + .+++..++++||+.+++|+||+|
T Consensus 161 A~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~-g-~~~~~~vr~~DG~~i~ad~VV~a 238 (793)
T COG1251 161 ARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIV-G-EDKVEGVRFADGTEIPADLVVMA 238 (793)
T ss_pred HHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhh-c-CcceeeEeecCCCcccceeEEEe
Confidence 999999999999999999999999999999999999999999999999999987 3 66889999999999999999999
Q ss_pred eccccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCCCC-
Q psy2951 1301 IGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT- 1379 (1466)
Q Consensus 1301 ~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~~- 1379 (1466)
+|++||.+++..+|++++. +|+||++|+||+|+|||+|+|+.+.... +.....+.+||+++|.++++...
T Consensus 239 ~GIrPn~ela~~aGlavnr--GIvvnd~mqTsdpdIYAvGEcae~~g~~-------yGLVaP~yeq~~v~a~hl~~~~~~ 309 (793)
T COG1251 239 VGIRPNDELAKEAGLAVNR--GIVVNDYMQTSDPDIYAVGECAEHRGKV-------YGLVAPLYEQAKVLADHLCGGEAE 309 (793)
T ss_pred cccccccHhHHhcCcCcCC--CeeecccccccCCCeeehhhHHHhcCcc-------ceehhHHHHHHHHHHHHhccCccc
Confidence 9999999999999999996 4999999999999999999999986543 33447899999999999999755
Q ss_pred CCC-CCccceeccccccEEEEeeCC--CCceEEEcCCcCCceEEEEEEeCCEEEEEEEecCcHHHHHHHHHHHcCCCCCh
Q psy2951 1380 SLS-TIPFFWTMLFGVGFRFAGYAA--GHTQVDIVGDLEALKFTAYYSNADKVLAILTVGMDPLAAQFAERIKMQKYIQK 1456 (1466)
Q Consensus 1380 ~~~-~~p~~w~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1456 (1466)
.|. .++..--+..|.++--+|.-+ ...+.++--|+....|.+..++||+++|++++|+..+-..+.++|.++..++.
T Consensus 310 ~y~gsv~stkLKv~Gvdl~S~GD~~e~~~~~~iv~~D~~~~iYKrlvL~dd~IvgavL~GDt~d~~~l~~li~~~~~~se 389 (793)
T COG1251 310 AYEGSVTSTKLKVSGVDVFSAGDFQETEGAESIVFRDEQRGIYKKLVLKDDKIVGAVLYGDTSDGGWLLDLILKGADISE 389 (793)
T ss_pred ccccccchhhhcccccceeeccchhhcCCCceEEEecccccceeEEEEeCCeEEEEEEEeecccchHHHHHHhcCCCccc
Confidence 454 344333346677777777643 22333444566778899999999999999999999999999999999987754
Q ss_pred h
Q psy2951 1457 D 1457 (1466)
Q Consensus 1457 ~ 1457 (1466)
.
T Consensus 390 ~ 390 (793)
T COG1251 390 I 390 (793)
T ss_pred c
Confidence 3
|
|
| >COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=385.97 Aligned_cols=379 Identities=28% Similarity=0.390 Sum_probs=281.7
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCC-C--CCCCCCCccchhc-----------------c-------c
Q psy2951 41 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE-N--FLPYDRVKLSKQL-----------------D-------I 93 (1466)
Q Consensus 41 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~-~--~~~~~~~~~~~~~-----------------~-------~ 93 (1466)
+.+||++|||+||||..||.++++.|.++.++|.... . ++.+ -+-.++.+ + .
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~-GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~i 80 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNV-GCIPSKALLHAAEVIEEARHAAKEYGISAEVPKI 80 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEee-CccccHHHHHHHHHHHHHhhcccccceecCCCCc
Confidence 3479999999999999999999999999555554421 0 0000 00001110 0 0
Q ss_pred Cc-----------ccccccChhhhhcCCeEEEeCceEEEeccccccEEEecC--CcEEecCEEEEccCCCCCCCCCCCCC
Q psy2951 94 KA-----------DSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQD--GTSIDFTKIYLATGSSPRTISQADGV 160 (1466)
Q Consensus 94 ~~-----------~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~--~~~~~~d~lviAtG~~~~~~~~~~~~ 160 (1466)
+. +........++++.+|+++.|+..+.+ .+++.+.. .++++++++|||||++|+.+|.++ .
T Consensus 81 d~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~----~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~~~~-~ 155 (454)
T COG1249 81 DFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVD----PHTVEVTGEDKETITADNIIIATGSRPRIPPGPG-I 155 (454)
T ss_pred CHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECC----CCEEEEcCCCceEEEeCEEEEcCCCCCcCCCCCC-C
Confidence 11 111223345566779999999988764 36777766 478999999999999999877443 3
Q ss_pred CcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcE
Q psy2951 161 NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVK 240 (1466)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~ 240 (1466)
+....+ +..+...+. .-+++++|||||++|+|+|..++++|.+||++++.+.++ +.+++++.+.+.+.|++.|++
T Consensus 156 ~~~~~~-~s~~~l~~~---~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL-p~~D~ei~~~~~~~l~~~gv~ 230 (454)
T COG1249 156 DGARIL-DSSDALFLL---ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL-PGEDPEISKELTKQLEKGGVK 230 (454)
T ss_pred CCCeEE-echhhcccc---cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-CcCCHHHHHHHHHHHHhCCeE
Confidence 332222 223333333 235799999999999999999999999999999999887 589999999999999999999
Q ss_pred EEcCceEEEEEecCCCCeEEEEcCCCc--EEeccEEEEeeccccCcc--ccccCCceecCCccEEECCCCCcCCCCEEEe
Q psy2951 241 FVMKANVSSFEKNEKNDVTAANLDNGT--TIPADLVIVGIGTVLNTN--YLDGKGVELNGQKAVVVNEYLETNVPGVYAG 316 (1466)
Q Consensus 241 i~~~~~v~~i~~~~~~~~~~v~~~~g~--~i~~D~Vi~a~G~~p~~~--~l~~~gl~~~~~g~i~vd~~~~t~~~~iya~ 316 (1466)
+++++.+++++.++++ ..+.++++. ++.+|.|++|+|++||++ .|++.|++++++|+|.||+.++|++|||||+
T Consensus 231 i~~~~~v~~~~~~~~~--v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~Tnvp~IyA~ 308 (454)
T COG1249 231 ILLNTKVTAVEKKDDG--VLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTTNVPGIYAI 308 (454)
T ss_pred EEccceEEEEEecCCe--EEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCccccCCCCEEEe
Confidence 9999999999876533 446666665 789999999999999999 3789999999999999998888999999999
Q ss_pred cccccccCccCCCCcceeccHHHHHHHHHHHHHHhcC-CC--CCCCCCC---cccccccceeeEEEEeecCC-----ceE
Q psy2951 317 GDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVE-KK--TSLSTIP---FFWTMLFGVGFRFAGYAAGH-----TQV 385 (1466)
Q Consensus 317 GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~-~~--~~~~~~p---~~~s~~~~~~~~~~G~~~~~-----~~~ 385 (1466)
|||++.+++ ...|..||++|++|+++ .. .++..+| |..|+...+|+......... ...
T Consensus 309 GDV~~~~~L-----------ah~A~~eg~iaa~~i~g~~~~~~d~~~iP~~ift~Peia~VGlte~ea~~~g~~~~~~~~ 377 (454)
T COG1249 309 GDVIGGPML-----------AHVAMAEGRIAAENIAGGKRTPIDYRLIPSVVFTDPEIASVGLTEEEAKEAGIDYKVGKF 377 (454)
T ss_pred eccCCCccc-----------HhHHHHHHHHHHHHHhCCCCCcCcccCCCEEEECCCcceeeeCCHHHHHhcCCceEEEEe
Confidence 999887754 44799999999999997 32 2567788 46666666664100000000 011
Q ss_pred EEe------cccCCCeEEEEEEcC--CEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 386 DIV------GDLEALKFTAYYSNA--DKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 386 ~~~------g~~~~~~~~~~~~~~--~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
.+. -.-+..+|.+.+.+. ++|+|++++|. +++++.++ .+|+++.+. ++|.|||++|.+
T Consensus 378 ~f~~~~ra~~~~~~~G~~Klv~d~~t~~IlGahivg~~A~ElI~~~~-~a~~~g~t~~~~~~~i~~HPT~sE~~ 450 (454)
T COG1249 378 PFAANGRAITMGETDGFVKLVVDKETGRILGAHIVGPGASELINEIA-LAIEMGATAEDLALTIHAHPTLSEAL 450 (454)
T ss_pred ecccchhHHhccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHH-HHHHCCCcHHHHhcCCCCCCChHHHH
Confidence 111 111467999999884 89999999999 56777777 999999865 899999999987
|
|
| >PRK14989 nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=412.65 Aligned_cols=368 Identities=22% Similarity=0.311 Sum_probs=306.5
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcC--CCccEEEEcCCCCCCCCCCccchhcc-cCcccccccCHhHhhhCCcEEEEceEE
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNG--FTGKLYFITDENFLPYDRVKLSKQLD-IKADSILLRTEEFYKDNDIHVIKGKKI 671 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g--~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~~~~~~~v 671 (1466)
+++|||||||+||+++|..|++++ ...+|++++++++++|.++.++..+. ...+++......++++.||+++.++.|
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V 82 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERA 82 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEE
Confidence 468999999999999999998864 34679999999999999988887765 445566677778889999999999989
Q ss_pred EEeccccccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCC--cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHH
Q psy2951 672 ISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEA 749 (1466)
Q Consensus 672 ~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~ 749 (1466)
..+ |.+.+.|.+.++.++.||+||||||+.|+.|++| |.+ +++.+++++++..+......+++++|||+|++|+|+
T Consensus 83 ~~I-d~~~~~V~~~~G~~i~yD~LVIATGs~p~~p~ip-G~~~~~v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~ 160 (847)
T PRK14989 83 ITI-NRQEKVIHSSAGRTVFYDKLIMATGSYPWIPPIK-GSETQDCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEA 160 (847)
T ss_pred EEE-eCCCcEEEECCCcEEECCEEEECCCCCcCCCCCC-CCCCCCeEEECCHHHHHHHHHHHhcCCeEEEECCCHHHHHH
Confidence 999 8888899888888999999999999999999999 876 688899999998887777778999999999999999
Q ss_pred HHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEc
Q psy2951 750 AAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVG 829 (1466)
Q Consensus 750 A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a 829 (1466)
|..|+++|.+|+++++.+.++...++++..+.+.+.|+++||+++++..+++|....++....+.+++|+++++|+||+|
T Consensus 161 A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A 240 (847)
T PRK14989 161 AGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFS 240 (847)
T ss_pred HHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEEC
Confidence 99999999999999999988877799999999999999999999999999999743334456788899999999999999
Q ss_pred cccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCCc
Q psy2951 830 IGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS 909 (1466)
Q Consensus 830 ~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~~ 909 (1466)
+|.+|++++++++|++++++|+|.||++++|++|+|||+|||+..+... .+.+..|..||++||.||+|....
T Consensus 241 ~G~rPn~~L~~~~Gl~~~~~G~I~VD~~l~Ts~p~IYAiGD~a~~~~~~-------~gl~~~a~~~a~vaa~~i~g~~~~ 313 (847)
T PRK14989 241 TGIRPQDKLATQCGLAVAPRGGIVINDSCQTSDPDIYAIGECASWNNRV-------FGLVAPGYKMAQVAVDHLLGSENA 313 (847)
T ss_pred CCcccCchHHhhcCccCCCCCcEEECCCCcCCCCCEEEeecceeEcCcc-------cccHHHHHHHHHHHHHHhcCCCcC
Confidence 9999999999999999999999999999999999999999999875533 236678999999999999997765
Q ss_pred CcccCee-eeeecCceeEEeeccCCCC---ceeEecccccceEEEEEec--CCeEEEEEeecCchhhh
Q psy2951 910 LSTIPFF-WTMLFGVGFRFAGYAAGHT---QVDIVGDLEALKFTAYYSN--ADKVLAILTVGMDPLAA 971 (1466)
Q Consensus 910 ~~~~~~~-~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~i~g~~~~g~~~~~~ 971 (1466)
++..... ....++..+...|...+.. ......+.....|.|++++ +++++|++++|......
T Consensus 314 ~~g~~~~~~lk~~G~~v~s~G~~~~~~~~~~~~~~~~~~~~~y~Klv~~~~~~~LlGa~lvGd~~~~~ 381 (847)
T PRK14989 314 FEGADLSAKLKLLGVDVGGIGDAHGRTPGARSYVYLDESKEIYKRLIVSEDNKTLLGAVLVGDTSDYG 381 (847)
T ss_pred CCCcccceEEEECCcceEecccccCCCCCceeEEEEcCCCCEEEEEEEECCCCEEEEEEEECCHHHHH
Confidence 5443222 2236676666666432221 1222122234568888883 56899999999765333
|
|
| >KOG1346|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=356.31 Aligned_cols=382 Identities=24% Similarity=0.381 Sum_probs=316.9
Q ss_pred CcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhccC-----------------cccccccChhhh
Q psy2951 1067 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIK-----------------ADSILLRTEEFY 1129 (1466)
Q Consensus 1067 ~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~~~-----------------~~~~~~~~~~~~ 1129 (1466)
-..+|||+|.+..+++.+.+....+..+.+|+.++.+||.||||||.+... ...+++.+..||
T Consensus 179 vp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd~Ff 258 (659)
T KOG1346|consen 179 VPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPDGFF 258 (659)
T ss_pred CceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecCCcce
Confidence 458999999999999999998888889999999999999999999987411 112222222232
Q ss_pred c---------cCCcEEEcCCeEEEeecCCCCeEEecCCcEEecCeEEEecCCCCCcCCCCC--CCC---cEEEecCHHHH
Q psy2951 1130 K---------DNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQAD--GVN---KVFYLRTVEDA 1195 (1466)
Q Consensus 1130 ~---------~~~v~~~~~~~v~~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~--g~~---~v~~~~~~~~~ 1195 (1466)
- .-||.+..+..|..| |...+.|++.||.+|.||+++||||.+|+.++.-. +.+ .+.++|...|+
T Consensus 259 vspeDLp~~~nGGvAvl~G~kvvki-d~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A~~evk~kit~fr~p~DF 337 (659)
T KOG1346|consen 259 VSPEDLPKAVNGGVAVLRGRKVVKI-DEEDKKVILNDGTTIGYDKCLIATGVRPKKLQVFEEASEEVKQKITYFRYPADF 337 (659)
T ss_pred eChhHCcccccCceEEEeccceEEe-ecccCeEEecCCcEeehhheeeecCcCcccchhhhhcCHHhhhheeEEecchHH
Confidence 2 238899999999999 99999999999999999999999999999876431 111 68899999999
Q ss_pred HhhhcccCCCCeEEEEcCCHHHHHHHHHHhcC----CCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEE
Q psy2951 1196 NNIAPHITPESNVVVIGSSFIGMEAAAFCASK----VKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVS 1271 (1466)
Q Consensus 1196 ~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~~----g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~ 1271 (1466)
.++...+..-++|.|||+|++|.|+|..|.+. |.+|+-+.....+|...|++-+++|-.+.+++.||.++.+..|.
T Consensus 338 ~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~ 417 (659)
T KOG1346|consen 338 KRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVE 417 (659)
T ss_pred HHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccchhhh
Confidence 99999888889999999999999999988765 78999999999999999999999999999999999999999999
Q ss_pred EEEecCCCcEEEEEcCCCCeeecCEEEEeeccccCccccccCCceeeCC-CeEEeCCCccccCCCEEEecccccCCCccC
Q psy2951 1272 SFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQ-KAVVVNEYLETNVPGVYAGGDIAYAPLHSF 1350 (1466)
Q Consensus 1272 ~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~~-G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~ 1350 (1466)
++. ...++ ..+.|+||.++..|+||+|+|..||+++++.+||++|.+ |++.||..++.. .|||++||++.|.+..
T Consensus 418 sv~-~~~~n-l~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgLeiD~~lGGfrvnaeL~ar-~NvwvAGdaacF~D~~- 493 (659)
T KOG1346|consen 418 SVR-KCCKN-LVLKLSDGSELRTDLVVVAVGEEPNSELAEASGLEIDEKLGGFRVNAELKAR-ENVWVAGDAACFEDGV- 493 (659)
T ss_pred hhh-hhccc-eEEEecCCCeeeeeeEEEEecCCCchhhcccccceeecccCcEEeeheeecc-cceeeecchhhhhccc-
Confidence 987 33333 448899999999999999999999999999999999976 789999998875 8999999999998876
Q ss_pred CCceeeeecHHHHHHHHHHHHHHhcCCCCCCCCCccceeccccccEEE--EeeCC-------------CCceE---EEc-
Q psy2951 1351 YNKNASIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRF--AGYAA-------------GHTQV---DIV- 1411 (1466)
Q Consensus 1351 ~~~~~~~~~~~~A~~qa~~aa~~i~g~~~~~~~~p~~w~~~~~~~~~~--~g~~~-------------~~~~~---~~~- 1411 (1466)
-++.|++||.+|.-.||.|+.||.|...||...-+|||+ .+..+.| +|.-. +.+++ --.
T Consensus 494 -LGrRRVehhdhavvSGRLAGENMtgAakpy~hqsmFWsd-lgP~igyeaIGlvDSSLpTVgVfA~p~s~~~~~~~se~s 571 (659)
T KOG1346|consen 494 -LGRRRVEHHDHAVVSGRLAGENMTGAAKPYKHQSMFWSD-LGPEIGYEAIGLVDSSLPTVGVFALPSSATRVDQLSESS 571 (659)
T ss_pred -ccceeccccccceeeceecccccccccCCccccceeeec-cCcccccceeeecccCCCcceeeeccccccchhhhhhcc
Confidence 356799999999999999999999999999988899997 4444433 33211 00000 000
Q ss_pred ---------------------------CCcCC----ceEEEEEEeCCEEEEEEEecCcHHHHHHHHHHHcCCCCC
Q psy2951 1412 ---------------------------GDLEA----LKFTAYYSNADKVLAILTVGMDPLAAQFAERIKMQKYIQ 1455 (1466)
Q Consensus 1412 ---------------------------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1455 (1466)
-+|.+ ++-+.||++|+.+||++++|--..+..+|++|.++...+
T Consensus 572 dt~v~~~s~s~s~ss~~~~~~s~~~v~~~P~e~~~ygKgViFYl~d~~iVGilLwN~Fnr~~~AR~II~d~kk~d 646 (659)
T KOG1346|consen 572 DTDVPETSTSSSQSSKSDAGASQDGVTCDPDEAGNYGKGVIFYLKDDKIVGILLWNLFNRIGLARTIINDNKKYD 646 (659)
T ss_pred CCCCccccccccccccccCCcCCCCCccCcccccccCceEEEEecCCcEEEEEehhhhccchhhHHHhccccchh
Confidence 01221 245789999999999999999999999999999886554
|
|
| >PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-39 Score=380.84 Aligned_cols=368 Identities=21% Similarity=0.274 Sum_probs=299.2
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcc--cCccccccc-CHhHhhhCCcEEEEceEE
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD--IKADSILLR-TEEFYKDNDIHVIKGKKI 671 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~gv~~~~~~~v 671 (1466)
+++|||||||+||+++|..|++++.+.+|+++++++..+|..+.++..+. ...+++... ..+++++.|++++.+++|
T Consensus 2 ~~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V 81 (377)
T PRK04965 2 SNGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWV 81 (377)
T ss_pred CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEE
Confidence 36899999999999999999999999999999999988888777655543 334444443 445677889999999889
Q ss_pred EEeccccccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHH
Q psy2951 672 ISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAA 751 (1466)
Q Consensus 672 ~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~ 751 (1466)
+.+ +.+++.+.+ ++..+.||+||||||++|+.|+++ |.+.++.++++.++..+...+..+++|+|||+|++|+|+|.
T Consensus 82 ~~i-d~~~~~v~~-~~~~~~yd~LVlATG~~~~~p~i~-G~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~ 158 (377)
T PRK04965 82 TDI-DAEAQVVKS-QGNQWQYDKLVLATGASAFVPPIP-GRELMLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAM 158 (377)
T ss_pred EEE-ECCCCEEEE-CCeEEeCCEEEECCCCCCCCCCCC-CCceEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHH
Confidence 999 888888876 567899999999999999999999 87778888898888877777677899999999999999999
Q ss_pred HHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccc
Q psy2951 752 FCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 831 (1466)
Q Consensus 752 ~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G 831 (1466)
.|++.+.+|+++++.+.++...++++....+.+.+++.||++++++++++++.. ++ ...+.+.+|+++++|.||+|+|
T Consensus 159 ~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~-~~~v~~~~g~~i~~D~vI~a~G 236 (377)
T PRK04965 159 DLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKT-DS-GIRATLDSGRSIEVDAVIAAAG 236 (377)
T ss_pred HHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEcc-CC-EEEEEEcCCcEEECCEEEECcC
Confidence 999999999999999887766678889999999999999999999999999843 22 3357788999999999999999
Q ss_pred cccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCCcCc
Q psy2951 832 TVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSLS 911 (1466)
Q Consensus 832 ~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~~~~ 911 (1466)
.+|++.+++..|++.+. | +.||++++|+.|+|||+|||+..+... .+.+..|..||+.+|+||+|....|.
T Consensus 237 ~~p~~~l~~~~gl~~~~-g-i~vd~~l~ts~~~VyA~GD~a~~~~~~-------~~~~~~a~~~g~~~a~n~~g~~~~~~ 307 (377)
T PRK04965 237 LRPNTALARRAGLAVNR-G-IVVDSYLQTSAPDIYALGDCAEINGQV-------LPFLQPIQLSAMALAKNLLGQNTPLK 307 (377)
T ss_pred CCcchHHHHHCCCCcCC-C-EEECCCcccCCCCEEEeeecEeECCce-------eehHHHHHHHHHHHHHHhcCCCcccc
Confidence 99999998888988753 4 999999999999999999999865321 24567799999999999999887776
Q ss_pred ccCeeee-eecCceeEEeeccCCCCceeEecccccceEEEEEecCCeEEEEEeecCchhhhhhhhh
Q psy2951 912 TIPFFWT-MLFGVGFRFAGYAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTVGMDPLAAQFAER 976 (1466)
Q Consensus 912 ~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~g~~~~~~~~~~g 976 (1466)
..+...+ ..++.++.+.|...+....+...+.+...|.+++.++++++|+..+|..........+
T Consensus 308 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~g~~~~~~~~~~~ 373 (377)
T PRK04965 308 LPAMLVKVKTPELPLQLAGETQRQDLRWQINAESQGMVAKGVDEAGQLRAFVVSEDRMKEAFPLLK 373 (377)
T ss_pred cCCccEEEecCceeeEECCCCCCCCceEEEEeCCCCeEEEEEccCCcEEEEEEEChhHHHHHHHHH
Confidence 5443333 2677788888875432212211122345577888899999999999887655444333
|
|
| >TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-39 Score=408.83 Aligned_cols=363 Identities=22% Similarity=0.362 Sum_probs=306.1
Q ss_pred EEEEcCchHHHHHHHHHHHcC-CCccEEEEcCCCCCCCCCCccchhcc--cCcccccccCHhHhhhCCcEEEEceEEEEe
Q psy2951 598 FIVVGGGPSGATCVETLRQNG-FTGKLYFITDENFLPYDRVKLSKQLD--IKADSILLRTEEFYKDNDIHVIKGKKIISD 674 (1466)
Q Consensus 598 vvVIGgG~AGl~aA~~l~~~g-~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i 674 (1466)
|||||||+||++||..|++++ ...+|++++++++++|.++.++..+. .+.+++.....+++++.+|+++++++|+.+
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I 80 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI 80 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence 689999999999999999876 45679999999999999888876654 455667777888999999999999989999
Q ss_pred ccccccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCC--cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHH
Q psy2951 675 SELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAF 752 (1466)
Q Consensus 675 ~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~ 752 (1466)
|...+.|.+.++.++.||+||||||+.|+.|++| |.+ +++.+++++++..+.+....+++++|||+|++|+|+|..
T Consensus 81 -d~~~k~V~~~~g~~~~yD~LVlATGs~p~~p~ip-G~~~~~v~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~ 158 (785)
T TIGR02374 81 -DTDQKQVITDAGRTLSYDKLILATGSYPFILPIP-GADKKGVYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVG 158 (785)
T ss_pred -ECCCCEEEECCCcEeeCCEEEECCCCCcCCCCCC-CCCCCCEEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHH
Confidence 8889999999999999999999999999999999 876 789999999998887777778999999999999999999
Q ss_pred HhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEcccc
Q psy2951 753 CASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGT 832 (1466)
Q Consensus 753 l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 832 (1466)
|+++|.+|+++++.+.++...+++.....+.+.++++||+++++..++++.. ++....+.+++|+++++|+||+++|.
T Consensus 159 L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~--~~~~~~v~~~dG~~i~~D~Vi~a~G~ 236 (785)
T TIGR02374 159 LQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVG--ATKADRIRFKDGSSLEADLIVMAAGI 236 (785)
T ss_pred HHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEc--CCceEEEEECCCCEEEcCEEEECCCC
Confidence 9999999999999998887778999999999999999999999999999973 34566788899999999999999999
Q ss_pred ccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCC-CcCc
Q psy2951 833 VLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK-TSLS 911 (1466)
Q Consensus 833 ~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~-~~~~ 911 (1466)
+|++++++.+|++++ |.|.||+++||++|+|||+|||+..+... .+.+..|..||+++|.||+|.. .+++
T Consensus 237 ~Pn~~la~~~gl~~~--ggI~Vd~~~~Ts~p~IyA~GD~a~~~~~~-------~gl~~~a~~qa~vaA~ni~g~~~~~~~ 307 (785)
T TIGR02374 237 RPNDELAVSAGIKVN--RGIIVNDSMQTSDPDIYAVGECAEHNGRV-------YGLVAPLYEQAKVLADHICGVECEEYE 307 (785)
T ss_pred CcCcHHHHhcCCccC--CCEEECCCcccCCCCEEEeeecceeCCcc-------cccHHHHHHHHHHHHHHhcCCCCcCCC
Confidence 999999988888876 56999999999999999999999876543 1356789999999999999877 5666
Q ss_pred ccCeee-eeecCceeEEeeccCCCC--ceeEecccccceEEEEEecCCeEEEEEeecCchhhhhh
Q psy2951 912 TIPFFW-TMLFGVGFRFAGYAAGHT--QVDIVGDLEALKFTAYYSNADKVLAILTVGMDPLAAQF 973 (1466)
Q Consensus 912 ~~~~~~-~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~g~~~~g~~~~~~~~ 973 (1466)
..+... ..+|+..+...|...... +.....+.....|.++++++++++|++.++......++
T Consensus 308 ~~~~~~~lk~~g~~v~s~G~~~~~~~~~~~~~~d~~~~~y~kl~~~~~rLlGavlvgd~~~~~~L 372 (785)
T TIGR02374 308 GSDLSAKLKLLGVDVWSAGDAQETERTTSIKIYDEQKGIYKKLVLSDDKLLGAVLFGDTSDYGRL 372 (785)
T ss_pred CCccceEEEECCcceEecccCCCCCCcEEEEEEcCCCCEEEEEEEECCEEEEEEEECCHHHHHHH
Confidence 555433 337888777777543222 12222233445688888889999999999987644433
|
|
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=383.49 Aligned_cols=383 Identities=19% Similarity=0.315 Sum_probs=295.8
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhc---cCcc-cccccChhhhccCCcEEEcCCe
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD---IKAD-SILLRTEEFYKDNDIHVIKGKK 1141 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~---~~~~-~~~~~~~~~~~~~~v~~~~~~~ 1141 (1466)
|.+|||||||+||++||.+|++.+.+.+|+|||++++++|.++.++.... ...+ .+.+....++++.+++++.+++
T Consensus 1 m~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~ 80 (438)
T PRK13512 1 MPKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHE 80 (438)
T ss_pred CCeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCE
Confidence 35899999999999999999998777899999999999998765555442 1112 2233334566778999999999
Q ss_pred EEEeecCCCCeEEecCCc-----EEecCeEEEecCCCCCcCCCCCCCCcEEEecCHHHHHhhhcccC--CCCeEEEEcCC
Q psy2951 1142 IISDSELNEKKIKLQDGT-----SIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHIT--PESNVVVIGSS 1214 (1466)
Q Consensus 1142 v~~i~d~~~~~v~~~~g~-----~~~yd~lvlAtG~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~--~~~~vvVvG~g 1214 (1466)
|+.| |+++++|.+.++. ++.||+||||||++|+.|+++ + ++++.+++++++.++++.+. .+++++|||+|
T Consensus 81 V~~I-d~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~~~-~-~~~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG 157 (438)
T PRK13512 81 VIAI-NDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLGFE-S-DITFTLRNLEDTDAIDQFIKANQVDKALVVGAG 157 (438)
T ss_pred EEEE-ECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCCCCCC-C-CCeEEecCHHHHHHHHHHHhhcCCCEEEEECCC
Confidence 9999 9999999987542 478999999999999887654 2 37888888999988876653 36899999999
Q ss_pred HHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeec
Q psy2951 1215 FIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPA 1294 (1466)
Q Consensus 1215 ~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~ 1294 (1466)
++|+|+|..|++.|.+|+++++.++++. .+++++.+.+.+.++++||+++++.++++++ . . .+.+.+|+++++
T Consensus 158 ~ig~E~A~~l~~~g~~Vtli~~~~~l~~-~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~-~-~----~v~~~~g~~~~~ 230 (438)
T PRK13512 158 YISLEVLENLYERGLHPTLIHRSDKINK-LMDADMNQPILDELDKREIPYRLNEEIDAIN-G-N----EVTFKSGKVEHY 230 (438)
T ss_pred HHHHHHHHHHHhCCCcEEEEecccccch-hcCHHHHHHHHHHHHhcCCEEEECCeEEEEe-C-C----EEEECCCCEEEe
Confidence 9999999999999999999999887664 6788999999999999999999999999997 2 2 367788889999
Q ss_pred CEEEEeeccccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHh
Q psy2951 1295 DLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNM 1374 (1466)
Q Consensus 1295 D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i 1374 (1466)
|.|++++|..|++++++..|+.++++|+|.||+++||++|+|||+|||+..+... .+.+.....++.|..||+++|+||
T Consensus 231 D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~-~~~~~~~~la~~A~~~a~~~a~ni 309 (438)
T PRK13512 231 DMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKFETNVPNIYAIGDIITSHYRH-VDLPASVPLAWGAHRAASIVAEQI 309 (438)
T ss_pred CEEEECcCCCcChHHHHhcCcccCCCCcEEECCCcccCCCCEEEeeeeEEeeecc-CCCceecccchHHHHHHHHHHHHh
Confidence 9999999999999999999999988889999999999999999999999754332 233334455677999999999999
Q ss_pred cCCCC-CC-CCCccceeccccccEEEEeeCC----CC--ceEEEcC-------CcCCceEEEEEEe--CCEEEEEEEecC
Q psy2951 1375 VEKKT-SL-STIPFFWTMLFGVGFRFAGYAA----GH--TQVDIVG-------DLEALKFTAYYSN--ADKVLAILTVGM 1437 (1466)
Q Consensus 1375 ~g~~~-~~-~~~p~~w~~~~~~~~~~~g~~~----~~--~~~~~~~-------~~~~~~~~~~~~~--~~~~~~~~~~~~ 1437 (1466)
+|... ++ ...+..|...++..+-.+|..+ .. ....... .-++..|++++++ +++++|+..+|.
T Consensus 310 ~g~~~~~~~~~~~~~~~~~~~~~ia~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilGa~~~g~ 389 (438)
T PRK13512 310 AGNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQFDYKMVEVTQGAHANYYPGNSPLHLRVYYDTSNRKILRAAAVGK 389 (438)
T ss_pred cCCCccccCCcccceEEEEcCceEEeecCCHHHHccCCcEEEEEecCCcCCCcCCCceEEEEEEEECCCCeEEEEEEEcc
Confidence 98643 33 2223334555677777777743 11 1111111 0123457777763 689999999998
Q ss_pred c--H-HHHHHHHHHHcCCCCChhcccc
Q psy2951 1438 D--P-LAAQFAERIKMQKYIQKDQIEN 1461 (1466)
Q Consensus 1438 ~--~-~~~~~~~~~~~~~~~~~~~~~~ 1461 (1466)
. . .+..+.-+|+.+ ++.++|.+
T Consensus 390 ~~a~e~i~~~~~ai~~~--~t~~~l~~ 414 (438)
T PRK13512 390 EGADKRIDVLSMAMMNQ--LTVDELTE 414 (438)
T ss_pred ccHHHHHHHHHHHHHcC--CcHHHHhh
Confidence 5 2 234555567666 44555543
|
|
| >PRK09564 coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=387.93 Aligned_cols=384 Identities=21% Similarity=0.328 Sum_probs=303.0
Q ss_pred cEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhc---cCcccccccChhhhccCCcEEEcCCeEEE
Q psy2951 1068 TFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD---IKADSILLRTEEFYKDNDIHVIKGKKIIS 1144 (1466)
Q Consensus 1068 ~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 1144 (1466)
+|||||||+||+++|..|++.+...+|+|||+++++.|.++.+..... .....+..+..+.+.+.+++++.+++|+.
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~ 81 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVVK 81 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEEE
Confidence 699999999999999999998776799999999988877654443222 12223344555667788999999999999
Q ss_pred eecCCCCeEEecC---CcEEe--cCeEEEecCCCCCcCCCCCCCC--cEEEecCHHHHHhhhcccC--CCCeEEEEcCCH
Q psy2951 1145 DSELNEKKIKLQD---GTSID--FTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHIT--PESNVVVIGSSF 1215 (1466)
Q Consensus 1145 i~d~~~~~v~~~~---g~~~~--yd~lvlAtG~~~~~~~~~~g~~--~v~~~~~~~~~~~l~~~~~--~~~~vvVvG~g~ 1215 (1466)
| |++.+.|.+.+ +..+. ||+||||||++|+.|+++ |++ +++++++++++.++++.+. .+++|+|||+|+
T Consensus 82 i-d~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~-g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~ 159 (444)
T PRK09564 82 V-DAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPPIK-NINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGF 159 (444)
T ss_pred E-ECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCCCCC-CcCCCCEEEECCHHHHHHHHHHHhhcCCCEEEEECCCH
Confidence 9 99999998864 56677 999999999999999998 876 7888889999988887664 368999999999
Q ss_pred HHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecC
Q psy2951 1216 IGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPAD 1295 (1466)
Q Consensus 1216 ~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D 1295 (1466)
+|+|+|..+++.|.+|+++++.++++...+++++.+.+.+.++++||+++++++++++. . ++++..+.++ +.++++|
T Consensus 160 ~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~-~-~~~~~~v~~~-~~~i~~d 236 (444)
T PRK09564 160 IGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLI-G-EDKVEGVVTD-KGEYEAD 236 (444)
T ss_pred HHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEe-c-CCcEEEEEeC-CCEEEcC
Confidence 99999999999999999999998888767889999999999999999999999999997 3 4455555554 4579999
Q ss_pred EEEEeeccccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhc
Q psy2951 1296 LVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMV 1375 (1466)
Q Consensus 1296 ~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~ 1375 (1466)
.|++|+|..|++++++.+|+.++.+|+|.||++++|+.|||||+|||+..+... .+.+.....|+.|..||+++|+||+
T Consensus 237 ~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~-~~~~~~~~~~~~A~~qg~~~a~ni~ 315 (444)
T PRK09564 237 VVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYGETSIENIYAAGDCATIYNIV-SNKNVYVPLATTANKLGRMVGENLA 315 (444)
T ss_pred EEEECcCCCcCHHHHHhcCccccCCCCEEECCCcccCCCCEEEeeeEEEEEecc-CCCeeeccchHHHHHHHHHHHHHhc
Confidence 999999999999999999999887889999999999999999999999887654 3555667789999999999999999
Q ss_pred CCCCCCC-CCccceeccccccEEEEeeCC------CCceEE--Ec-CC------cCCceEEEEEE--eCCEEEEEEEecC
Q psy2951 1376 EKKTSLS-TIPFFWTMLFGVGFRFAGYAA------GHTQVD--IV-GD------LEALKFTAYYS--NADKVLAILTVGM 1437 (1466)
Q Consensus 1376 g~~~~~~-~~p~~w~~~~~~~~~~~g~~~------~~~~~~--~~-~~------~~~~~~~~~~~--~~~~~~~~~~~~~ 1437 (1466)
|...++. ..+..+...++..+-.+|..+ +.+-.+ .. .+ -.+..|++..+ ++++++|+..+|.
T Consensus 316 g~~~~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~ 395 (444)
T PRK09564 316 GRHVSFKGTLGSACIKVLDLEAARTGLTEEEAKKLGIDYKTVFIKDKNHTNYYPGQEDLYVKLIYEADTKVILGGQIIGK 395 (444)
T ss_pred CCCCCCCCcccceEEEECCEEEEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEEEEEEECCCCeEEeEEEEcC
Confidence 9765442 122123335677777778642 122111 11 00 01245776666 4789999999997
Q ss_pred c---HHHHHHHHHHHcCCCCChhcc
Q psy2951 1438 D---PLAAQFAERIKMQKYIQKDQI 1459 (1466)
Q Consensus 1438 ~---~~~~~~~~~~~~~~~~~~~~~ 1459 (1466)
. ..+..+.-+|+.+ ++.++|
T Consensus 396 ~~~~~~i~~~~~~i~~~--~~~~~~ 418 (444)
T PRK09564 396 KGAVLRIDALAVAIYAK--LTTQEL 418 (444)
T ss_pred ccHHHHHHHHHHHHHCC--CCHHHH
Confidence 4 3344556677777 444544
|
|
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=375.63 Aligned_cols=362 Identities=19% Similarity=0.321 Sum_probs=284.2
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcc---cCcccccccCH-hHhhhCCcEEEEceE
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD---IKADSILLRTE-EFYKDNDIHVIKGKK 670 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~gv~~~~~~~ 670 (1466)
+++|||||||+||++||..|++++.+.+|+++++++++.|..+.+..... ...++...... .+.++.|++++.+++
T Consensus 1 m~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~ 80 (438)
T PRK13512 1 MPKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHE 80 (438)
T ss_pred CCeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCE
Confidence 46899999999999999999998877889999999988888766554432 11222333333 344667999999888
Q ss_pred EEEeccccccEEEccCC---C--EEecCEEEEcCCCCCCcCCCCCCCCcEEEecCHHHHHhhcccCC--CCCcEEEECCC
Q psy2951 671 IISDSELNEKKIKLQDG---T--SIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHIT--PESNVVVIGSS 743 (1466)
Q Consensus 671 v~~i~~~~~~~v~~~~~---~--~~~~d~lviAtG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~vvVvG~G 743 (1466)
|..+ |.+++.|.+.++ . +++||+||||||++|+.|+++ + ++++..+++.++..+.+.+. .+++++|||+|
T Consensus 81 V~~I-d~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~~~-~-~~~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG 157 (438)
T PRK13512 81 VIAI-NDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLGFE-S-DITFTLRNLEDTDAIDQFIKANQVDKALVVGAG 157 (438)
T ss_pred EEEE-ECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCCCCCC-C-CCeEEecCHHHHHHHHHHHhhcCCCEEEEECCC
Confidence 9999 998888887653 2 478999999999999888765 3 35777888888776654432 37899999999
Q ss_pred hHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEec
Q psy2951 744 FIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPA 823 (1466)
Q Consensus 744 ~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~ 823 (1466)
++|+|+|..|++.|.+|+++++.++++ +.+++++.+.+.+.|+++||++++++++++++. . .+.+++|+++++
T Consensus 158 ~ig~E~A~~l~~~g~~Vtli~~~~~l~-~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~--~----~v~~~~g~~~~~ 230 (438)
T PRK13512 158 YISLEVLENLYERGLHPTLIHRSDKIN-KLMDADMNQPILDELDKREIPYRLNEEIDAING--N----EVTFKSGKVEHY 230 (438)
T ss_pred HHHHHHHHHHHhCCCcEEEEecccccc-hhcCHHHHHHHHHHHHhcCCEEEECCeEEEEeC--C----EEEECCCCEEEe
Confidence 999999999999999999999998765 578899999999999999999999999999972 1 456677889999
Q ss_pred CEEEEccccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHh
Q psy2951 824 DLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNM 903 (1466)
Q Consensus 824 D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i 903 (1466)
|.|++|+|++|+++++++.|++++++|+|.||+++||+.|+|||+|||+..+... .+.+..++.++.|.+||+++|+||
T Consensus 231 D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~-~~~~~~~~la~~A~~~a~~~a~ni 309 (438)
T PRK13512 231 DMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKFETNVPNIYAIGDIITSHYRH-VDLPASVPLAWGAHRAASIVAEQI 309 (438)
T ss_pred CEEEECcCCCcChHHHHhcCcccCCCCcEEECCCcccCCCCEEEeeeeEEeeecc-CCCceecccchHHHHHHHHHHHHh
Confidence 9999999999999999999999988899999999999999999999999754322 233445567788999999999999
Q ss_pred ccCCC-cC-cccCeeeeeecCceeEEeeccCCCCc------eeEec-------ccccceEEEEEe--cCCeEEEEEeecC
Q psy2951 904 VEKKT-SL-STIPFFWTMLFGVGFRFAGYAAGHTQ------VDIVG-------DLEALKFTAYYS--NADKVLAILTVGM 966 (1466)
Q Consensus 904 ~~~~~-~~-~~~~~~~~~~~~~~~~~~g~~~~~~~------~~~~~-------~~~~~~~~~~~~--~~~~i~g~~~~g~ 966 (1466)
+|... .+ ...+..+..+++..+..+|+++...+ ..... .-++.+|.|+++ ++++++|++++|.
T Consensus 310 ~g~~~~~~~~~~~~~~~~~~~~~ia~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilGa~~~g~ 389 (438)
T PRK13512 310 AGNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQFDYKMVEVTQGAHANYYPGNSPLHLRVYYDTSNRKILRAAAVGK 389 (438)
T ss_pred cCCCccccCCcccceEEEEcCceEEeecCCHHHHccCCcEEEEEecCCcCCCcCCCceEEEEEEEECCCCeEEEEEEEcc
Confidence 98542 22 22222334467777888887653111 11100 113456889888 4689999999998
Q ss_pred c
Q psy2951 967 D 967 (1466)
Q Consensus 967 ~ 967 (1466)
+
T Consensus 390 ~ 390 (438)
T PRK13512 390 E 390 (438)
T ss_pred c
Confidence 6
|
|
| >PRK09564 coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-37 Score=375.95 Aligned_cols=366 Identities=21% Similarity=0.322 Sum_probs=290.2
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcc---cCcccccccCHhHhhhCCcEEEEceEEE
Q psy2951 596 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD---IKADSILLRTEEFYKDNDIHVIKGKKII 672 (1466)
Q Consensus 596 ~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~gv~~~~~~~v~ 672 (1466)
++|||||||+||+++|..|++++.+.+|+++++++++.|..+.+..... ....++..+..+.+++.|++++.+++|+
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 80 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVV 80 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEE
Confidence 4799999999999999999999887889999999887776554443222 2233455666777888899999998899
Q ss_pred EeccccccEEEccC---CCEEe--cCEEEEcCCCCCCcCCCCCCCC--cEEEecCHHHHHhhcccCC--CCCcEEEECCC
Q psy2951 673 SDSELNEKKIKLQD---GTSID--FTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHIT--PESNVVVIGSS 743 (1466)
Q Consensus 673 ~i~~~~~~~v~~~~---~~~~~--~d~lviAtG~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~--~~~~vvVvG~G 743 (1466)
.+ +.+.+.+.+.+ +..+. ||+||||||++|..|+++ |.+ +++.++++.++.++.+.+. .+++|+|||+|
T Consensus 81 ~i-d~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~-g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG 158 (444)
T PRK09564 81 KV-DAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPPIK-NINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAG 158 (444)
T ss_pred EE-ECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCCCCC-CcCCCCEEEECCHHHHHHHHHHHhhcCCCEEEEECCC
Confidence 99 88888887754 55666 999999999999999998 865 6888888887777665442 47999999999
Q ss_pred hHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEec
Q psy2951 744 FIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPA 823 (1466)
Q Consensus 744 ~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~ 823 (1466)
++|+|+|..|++.|.+|+++++.++++...+++++.+.+.+.+++.||++++++++++++. ++.+..+.++ +.++++
T Consensus 159 ~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~v~~~-~~~i~~ 235 (444)
T PRK09564 159 FIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIG--EDKVEGVVTD-KGEYEA 235 (444)
T ss_pred HHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEec--CCcEEEEEeC-CCEEEc
Confidence 9999999999999999999999887776568899999999999999999999999999973 3344445554 457999
Q ss_pred CEEEEccccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHh
Q psy2951 824 DLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNM 903 (1466)
Q Consensus 824 D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i 903 (1466)
|.+|+|+|++|+++++++.|++++++|+|.||++++|+.|||||+|||+..+... .+.+..+++++.|.+||+++|+||
T Consensus 236 d~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~-~~~~~~~~~~~~A~~qg~~~a~ni 314 (444)
T PRK09564 236 DVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYGETSIENIYAAGDCATIYNIV-SNKNVYVPLATTANKLGRMVGENL 314 (444)
T ss_pred CEEEECcCCCcCHHHHHhcCccccCCCCEEECCCcccCCCCEEEeeeEEEEEecc-CCCeeeccchHHHHHHHHHHHHHh
Confidence 9999999999999999999999888899999999999999999999999876543 344555678899999999999999
Q ss_pred ccCCCcCcc-cCeeeeeecCceeEEeeccCC------CC--ceeEe-c------ccccceEEEEEe--cCCeEEEEEeec
Q psy2951 904 VEKKTSLST-IPFFWTMLFGVGFRFAGYAAG------HT--QVDIV-G------DLEALKFTAYYS--NADKVLAILTVG 965 (1466)
Q Consensus 904 ~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~------~~--~~~~~-~------~~~~~~~~~~~~--~~~~i~g~~~~g 965 (1466)
++....++. .+.....+++..+.++|+++. .+ ..... . .-+...|.|+++ ++++++|+++++
T Consensus 315 ~g~~~~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g 394 (444)
T PRK09564 315 AGRHVSFKGTLGSACIKVLDLEAARTGLTEEEAKKLGIDYKTVFIKDKNHTNYYPGQEDLYVKLIYEADTKVILGGQIIG 394 (444)
T ss_pred cCCCCCCCCcccceEEEECCEEEEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEEEEEEECCCCeEEeEEEEc
Confidence 987554432 111122356777888887642 11 01111 0 012356888888 579999999999
Q ss_pred Cc
Q psy2951 966 MD 967 (1466)
Q Consensus 966 ~~ 967 (1466)
..
T Consensus 395 ~~ 396 (444)
T PRK09564 395 KK 396 (444)
T ss_pred Cc
Confidence 85
|
|
| >TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-37 Score=369.67 Aligned_cols=373 Identities=20% Similarity=0.265 Sum_probs=272.0
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCC-CCCccch----------------hccc--------Ccc
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY-DRVKLSK----------------QLDI--------KAD 96 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~-~~~~~~~----------------~~~~--------~~~ 96 (1466)
+++||+||||||||++||..|++.|++|.|++.+.-...-. ..+..++ .+.. +..
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAKKLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNWP 80 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEecccccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCHH
Confidence 46899999999999999999999999999877532111000 0011111 0000 000
Q ss_pred -----------cccccChhhhhcCCeEEEeCceEEEeccccccEEEecCCcEEecCEEEEccCCCCCCCCCCCCCCcEEE
Q psy2951 97 -----------SILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFY 165 (1466)
Q Consensus 97 -----------~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~~~~~~~~ 165 (1466)
.+...+...+++.+++++.++.++.. ..++.+ ++..+.||+||||||++|+.++.+++.+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~----~~~v~v-~~~~~~~d~vIiAtGs~p~~p~~i~g~~~~~- 154 (450)
T TIGR01421 81 ELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTK----DGTVEV-NGRDYTAPHILIATGGKPSFPENIPGAELGT- 154 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcc----CCEEEE-CCEEEEeCEEEEecCCCCCCCCCCCCCceeE-
Confidence 11112344566779999999876532 356665 4567999999999999998653456554221
Q ss_pred ecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEEcCc
Q psy2951 166 LRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKA 245 (1466)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~ 245 (1466)
+.++...+. ..+++++|||||++|+|+|..|++.|.+||++++.+.++ +.+++++.+.+.+.|+++||++++++
T Consensus 155 --~~~~~~~~~---~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il-~~~d~~~~~~~~~~l~~~gI~i~~~~ 228 (450)
T TIGR01421 155 --DSDGFFALE---ELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL-RSFDSMISETITEEYEKEGINVHKLS 228 (450)
T ss_pred --cHHHhhCcc---ccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-cccCHHHHHHHHHHHHHcCCEEEcCC
Confidence 334433332 235799999999999999999999999999999988776 56899999999999999999999999
Q ss_pred eEEEEEecCCCCeEEEEcCCC-cEEeccEEEEeeccccCccc--cccCCceecCCccEEECCCCCcCCCCEEEecccccc
Q psy2951 246 NVSSFEKNEKNDVTAANLDNG-TTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYA 322 (1466)
Q Consensus 246 ~v~~i~~~~~~~~~~v~~~~g-~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD~~~~ 322 (1466)
.+++++.++++ ...+.++++ +.+++|.||+|+|++||+++ ++..+++++++|+|.||+++||+.|+|||+|||++.
T Consensus 229 ~v~~i~~~~~~-~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T~~p~IyAiGD~~~~ 307 (450)
T TIGR01421 229 KPVKVEKTVEG-KLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNTNVPGIYALGDVVGK 307 (450)
T ss_pred EEEEEEEeCCc-eEEEEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCCcCCCCCEEEEEecCCC
Confidence 99999865332 234566667 57999999999999999986 577889999999999999999999999999999875
Q ss_pred cCccCCCCcceeccHHHHHHHHHHHHHHhcCCC----CCCCCCC---cccccccceeeEEEEeecC-------CceEE--
Q psy2951 323 PLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK----TSLSTIP---FFWTMLFGVGFRFAGYAAG-------HTQVD-- 386 (1466)
Q Consensus 323 ~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~----~~~~~~p---~~~s~~~~~~~~~~G~~~~-------~~~~~-- 386 (1466)
+ ..+..|..||+.+++||++.. ..+..+| |+.+....+| .+.. .+.+.
T Consensus 308 ~-----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~f~~p~ia~vG-----lte~~a~~~~g~~~~~~~ 371 (450)
T TIGR01421 308 V-----------ELTPVAIAAGRKLSERLFNGKTDDKLDYNNVPTVVFSHPPIGTIG-----LTEKEAIEKYGKENIKVY 371 (450)
T ss_pred c-----------ccHHHHHHHHHHHHHHHhcCCCCCccCcccCCeEEeCCCceEEEe-----CCHHHHHhhcCCCCEEEE
Confidence 4 235679999999999998642 2345566 3444444444 3221 01011
Q ss_pred ---Eec------ccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 387 ---IVG------DLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 387 ---~~g------~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
+.. .-+..+|.+++.+ +++|+|++++|. +++++.++ .+|+++.+. ++++|||++|.+
T Consensus 372 ~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~-~ai~~~~t~~~l~~~~~~hPt~~e~~ 446 (450)
T TIGR01421 372 NSSFTPMYYAMTSEKQKCRMKLVCAGKEEKVVGLHGIGDGVDEMLQGFA-VAIKMGATKADFDNTVAIHPTSSEEL 446 (450)
T ss_pred EEEcChhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhhcccCCCChHHHH
Confidence 100 1135688888876 589999999998 55666777 999999876 799999999976
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria. |
| >KOG1335|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=327.56 Aligned_cols=383 Identities=22% Similarity=0.307 Sum_probs=287.0
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCC--------CCC---------CCCCccc---hhccc--------
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN--------FLP---------YDRVKLS---KQLDI-------- 93 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~--------~~~---------~~~~~~~---~~~~~-------- 93 (1466)
..+||+|||+||+|..||..+++.|++...++....- ..| +.+.... +..+.
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~d 117 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLD 117 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecC
Confidence 5799999999999999999999999998887653321 011 0000000 00000
Q ss_pred ----------CcccccccChhhhhcCCeEEEeCceEEEeccccccEEEecCC--cEEecCEEEEccCCCCCCCCCCCCCC
Q psy2951 94 ----------KADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQADGVN 161 (1466)
Q Consensus 94 ----------~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~--~~~~~d~lviAtG~~~~~~~~~~~~~ 161 (1466)
...++...+...+++.+++++.|...+. ++...++...++ ..+.++++||||||.-.++|.+.-.+
T Consensus 118 l~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~--~p~~V~v~k~dg~~~ii~aKnIiiATGSeV~~~PGI~IDe 195 (506)
T KOG1335|consen 118 LQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFL--DPNKVSVKKIDGEDQIIKAKNIIIATGSEVTPFPGITIDE 195 (506)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeec--CCceEEEeccCCCceEEeeeeEEEEeCCccCCCCCeEecC
Confidence 1122333456677888999999987765 445555555555 46899999999999655455554333
Q ss_pred cEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEE
Q psy2951 162 KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKF 241 (1466)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i 241 (1466)
... -+.+.++.+.. -+++++|||+|++|+|++..+.++|.+||+++-.+...+ .+|.++++..++.|.++|+++
T Consensus 196 kkI--VSStgALsL~~---vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~-~mD~Eisk~~qr~L~kQgikF 269 (506)
T KOG1335|consen 196 KKI--VSSTGALSLKE---VPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGG-VMDGEISKAFQRVLQKQGIKF 269 (506)
T ss_pred ceE--EecCCccchhh---CcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhcc-ccCHHHHHHHHHHHHhcCcee
Confidence 322 13445555543 357999999999999999999999999999998877664 589999999999999999999
Q ss_pred EcCceEEEEEecCCCCeEEEE----cCCCcEEeccEEEEeeccccCccc--cccCCceecCCccEEECCCCCcCCCCEEE
Q psy2951 242 VMKANVSSFEKNEKNDVTAAN----LDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYA 315 (1466)
Q Consensus 242 ~~~~~v~~i~~~~~~~~~~v~----~~~g~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~~~iya 315 (1466)
+++++|...+.+.++.+.... ....++++||.+++++|++|.+.. ++..|++.|.+|++.+|..++|.+|+||+
T Consensus 270 ~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~t~vP~i~~ 349 (506)
T KOG1335|consen 270 KLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQTKVPHIYA 349 (506)
T ss_pred EeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceeccccccccCCceEE
Confidence 999999999988766443221 122357999999999999999885 47788999999999999999999999999
Q ss_pred ecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCC--CCCCCCC---cccccccceeeE-----EEEeecCCceE
Q psy2951 316 GGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK--TSLSTIP---FFWTMLFGVGFR-----FAGYAAGHTQV 385 (1466)
Q Consensus 316 ~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~--~~~~~~p---~~~s~~~~~~~~-----~~G~~~~~~~~ 385 (1466)
+||++..||+.| .|..||..+.+.|.+.. -.|..+| |++|+..++|.. -.|.......+
T Consensus 350 IGDv~~gpMLAh-----------kAeeegI~~VE~i~g~~~hv~ynciP~v~ythPEvawVG~TEeqlkeegi~y~vgkf 418 (506)
T KOG1335|consen 350 IGDVTLGPMLAH-----------KAEEEGIAAVEGIAGGHGHVDYNCIPSVVYTHPEVAWVGKTEEQLKEEGIKYKVGKF 418 (506)
T ss_pred ecccCCcchhhh-----------hhhhhchhheeeecccCcccccCCCCceeecccceeeeccchhhHHhcCcceEeeec
Confidence 999999988754 68889999999999874 4666677 888888777742 11221111112
Q ss_pred EE------ecccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 386 DI------VGDLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 386 ~~------~g~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
++ .-..+..+|.+.+.+ +++|+|++++|. .+++++.. .+|+.+.+. .||+|||++|.+
T Consensus 419 pF~aNsRaktn~d~eg~vKvl~d~~tdkiLGvHiigp~AgEli~EA~-lAieyGasaeDvarvchaHPTlSEa~ 491 (506)
T KOG1335|consen 419 PFSANSRAKTNNDTEGFVKVLADKETDKILGVHIIGPNAGELIHEAS-LAIEYGASAEDVARVCHAHPTLSEAF 491 (506)
T ss_pred cccccchhhccCCccceeEEEecCCCCcEEEEEEecCCHHHHHHHHH-HHHHhCccHHHHhhccCCCCcHHHHH
Confidence 22 223357899999887 489999999999 56777777 999999886 799999999999
|
|
| >COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-37 Score=356.23 Aligned_cols=348 Identities=28% Similarity=0.416 Sum_probs=264.8
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCC----Cccch-----------------hcc-------c
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR----VKLSK-----------------QLD-------I 645 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~----~~~~~-----------------~~~-------~ 645 (1466)
..+|++||||||||..||.+++++|.+ +.++|+...+++.- |-.++ .++ .
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~k--valvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~i 80 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLK--VALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKI 80 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCC--EEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCc
Confidence 469999999999999999999999999 88888874222100 00000 000 1
Q ss_pred Ccccccc-----------cCHhHhhhCCcEEEEceEEEEeccccccEEEccC--CCEEecCEEEEcCCCCCCcCCCCCCC
Q psy2951 646 KADSILL-----------RTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQD--GTSIDFTKIYLATGSSPRTISQADGV 712 (1466)
Q Consensus 646 ~~~~~~~-----------~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~--~~~~~~d~lviAtG~~~~~~~~~~g~ 712 (1466)
+..++.. ....+++..+|+++.++ ...+ + .++|.+.. .++++++++|||||++|+.|+++ +.
T Consensus 81 d~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~-a~f~-~--~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~~~-~~ 155 (454)
T COG1249 81 DFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGE-ARFV-D--PHTVEVTGEDKETITADNIIIATGSRPRIPPGP-GI 155 (454)
T ss_pred CHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEE-EEEC-C--CCEEEEcCCCceEEEeCEEEEcCCCCCcCCCCC-CC
Confidence 1111111 11234556699999999 6666 5 45555544 47999999999999999999999 88
Q ss_pred CcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcE
Q psy2951 713 NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVK 792 (1466)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~ 792 (1466)
++...+.+ ++...+. ..+++++|||||++|+|+|..++++|.+|||+++.++++ +.+|+++++.+.+.|++.|++
T Consensus 156 ~~~~~~~s-~~~l~~~---~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL-p~~D~ei~~~~~~~l~~~gv~ 230 (454)
T COG1249 156 DGARILDS-SDALFLL---ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL-PGEDPEISKELTKQLEKGGVK 230 (454)
T ss_pred CCCeEEec-hhhcccc---cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-CcCCHHHHHHHHHHHHhCCeE
Confidence 75443322 2322222 349999999999999999999999999999999999988 689999999999999999999
Q ss_pred EEccceEEEEEecCCCceEEEECCCCc--EEecCEEEEccccccCcc--ccccCCceeeCCCcEEeCCCCCCCCCCeEEe
Q psy2951 793 FVMKANVSSFEKNEKNDVTAANLDNGT--TIPADLVIVGIGTVLNTN--YLDGKGVELNGQKAVVVNEYLETNVPGVYAG 868 (1466)
Q Consensus 793 ~~~~~~v~~i~~~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~~~--~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~ 868 (1466)
++++..+++++..+++ ..+.+++++ ++++|.|++|+|++||++ -+++.|++++++|+|.||++++|++|+|||+
T Consensus 231 i~~~~~v~~~~~~~~~--v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~Tnvp~IyA~ 308 (454)
T COG1249 231 ILLNTKVTAVEKKDDG--VLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTTNVPGIYAI 308 (454)
T ss_pred EEccceEEEEEecCCe--EEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCccccCCCCEEEe
Confidence 9999999999854443 467777766 799999999999999998 3799999999999999998888889999999
Q ss_pred ccccccCCcccCCceeeeccHHHHHHHHHHHHHHhcc-CCC--cCcccCeeeeeecCceeEEeeccCCCC-----ceeEe
Q psy2951 869 GDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVE-KKT--SLSTIPFFWTMLFGVGFRFAGYAAGHT-----QVDIV 940 (1466)
Q Consensus 869 GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~-~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~ 940 (1466)
|||+..+... +.|..||++||.||++ ... .+..+|+.. +....+.++|+++... +..+.
T Consensus 309 GDV~~~~~La-----------h~A~~eg~iaa~~i~g~~~~~~d~~~iP~~i--ft~Peia~VGlte~ea~~~g~~~~~~ 375 (454)
T COG1249 309 GDVIGGPMLA-----------HVAMAEGRIAAENIAGGKRTPIDYRLIPSVV--FTDPEIASVGLTEEEAKEAGIDYKVG 375 (454)
T ss_pred eccCCCcccH-----------hHHHHHHHHHHHHHhCCCCCcCcccCCCEEE--ECCCcceeeeCCHHHHHhcCCceEEE
Confidence 9998877643 7999999999999997 322 366788543 3445577888765211 11000
Q ss_pred -----------cccccceEEEEEe--cCCeEEEEEeecCch
Q psy2951 941 -----------GDLEALKFTAYYS--NADKVLAILTVGMDP 968 (1466)
Q Consensus 941 -----------~~~~~~~~~~~~~--~~~~i~g~~~~g~~~ 968 (1466)
..-+..+|.|+++ ++++++|+++++...
T Consensus 376 ~~~f~~~~ra~~~~~~~G~~Klv~d~~t~~IlGahivg~~A 416 (454)
T COG1249 376 KFPFAANGRAITMGETDGFVKLVVDKETGRILGAHIVGPGA 416 (454)
T ss_pred EeecccchhHHhccCCceEEEEEEECCCCeEEEEEEECCCH
Confidence 0123578999999 468999999999984
|
|
| >PLN02507 glutathione reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=366.51 Aligned_cols=375 Identities=21% Similarity=0.254 Sum_probs=273.3
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcC-------CCCCCC---C-CCccchhc----------------cc
Q psy2951 41 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITD-------ENFLPY---D-RVKLSKQL----------------DI 93 (1466)
Q Consensus 41 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~-------~~~~~~---~-~~~~~~~~----------------~~ 93 (1466)
..++||+||||||||++||..++++|.+|.|++... ...+.. . .+..++.+ +.
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~ 102 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGW 102 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCc
Confidence 446899999999999999999999999999988411 110100 0 01111111 01
Q ss_pred C--------ccccc-----------ccChhhhhcCCeEEEeCceEEEeccccccEEEecCCc--EEecCEEEEccCCCCC
Q psy2951 94 K--------ADSIL-----------LRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGT--SIDFTKIYLATGSSPR 152 (1466)
Q Consensus 94 ~--------~~~~~-----------~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~--~~~~d~lviAtG~~~~ 152 (1466)
. ..++. ..+...+++.+++++.+..... +....++++.+++ .+.||+||||||++|.
T Consensus 103 ~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~v--d~~~v~V~~~~g~~~~~~~d~LIIATGs~p~ 180 (499)
T PLN02507 103 EINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIV--GPNEVEVTQLDGTKLRYTAKHILIATGSRAQ 180 (499)
T ss_pred ccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEe--cCCEEEEEeCCCcEEEEEcCEEEEecCCCCC
Confidence 0 00111 1123445567999999976554 4455667766765 5889999999999997
Q ss_pred CCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHH
Q psy2951 153 TISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITK 232 (1466)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~ 232 (1466)
.++ +++.+.. .+.++...+.. .+++++|||+|++|+|+|..+++.|.+|+++++.+.++ +.+++++.+.+.+
T Consensus 181 ~p~-ipG~~~~---~~~~~~~~l~~---~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l-~~~d~~~~~~l~~ 252 (499)
T PLN02507 181 RPN-IPGKELA---ITSDEALSLEE---LPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL-RGFDDEMRAVVAR 252 (499)
T ss_pred CCC-CCCccce---echHHhhhhhh---cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC-cccCHHHHHHHHH
Confidence 554 5554332 24455554432 35799999999999999999999999999999988766 4588999999999
Q ss_pred HHHhCCcEEEcCceEEEEEecCCCCeEEEEcCCCcEEeccEEEEeeccccCccc--cccCCceecCCccEEECCCCCcCC
Q psy2951 233 LFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNV 310 (1466)
Q Consensus 233 ~l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~ 310 (1466)
.|+++||+++++++|++++..++ . ..+.+.+|+++++|.|++++|++||+++ ++..+++++++|+|.||+++||+.
T Consensus 253 ~l~~~GI~i~~~~~V~~i~~~~~-~-~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~~Ts~ 330 (499)
T PLN02507 253 NLEGRGINLHPRTNLTQLTKTEG-G-IKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYSRTNI 330 (499)
T ss_pred HHHhCCCEEEeCCEEEEEEEeCC-e-EEEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCCcCCC
Confidence 99999999999999999986432 2 3456677888999999999999999987 567889999889999999999999
Q ss_pred CCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCCC---CCCCCC---cccccccceeeEEEEeecC---
Q psy2951 311 PGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT---SLSTIP---FFWTMLFGVGFRFAGYAAG--- 381 (1466)
Q Consensus 311 ~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~---~~~~~p---~~~s~~~~~~~~~~G~~~~--- 381 (1466)
|||||+|||++.+. .+..|..||++++.||++... .+..+| |.++....+|+ +..
T Consensus 331 p~IyAiGDv~~~~~-----------l~~~A~~qg~~aa~ni~g~~~~~~~~~~~p~~if~~p~ia~vGl-----te~ea~ 394 (499)
T PLN02507 331 PSIWAIGDVTNRIN-----------LTPVALMEGTCFAKTVFGGQPTKPDYENVACAVFCIPPLSVVGL-----SEEEAV 394 (499)
T ss_pred CCEEEeeEcCCCCc-----------cHHHHHHHHHHHHHHHcCCCCCcCCCCCCCeEEECCCccEEEeC-----CHHHHH
Confidence 99999999987532 456899999999999987532 334455 33444444443 210
Q ss_pred ---CceE-----EEec------ccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCc
Q psy2951 382 ---HTQV-----DIVG------DLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHR 438 (1466)
Q Consensus 382 ---~~~~-----~~~g------~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p 438 (1466)
...+ .+.. .....+|.+++.+ +++|+|++++|. +++++.++ .+|+.+.+. ++++||
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~ilG~~~vg~~a~e~i~~~~-~ai~~~~t~~~l~~~~~~hP 473 (499)
T PLN02507 395 EQAKGDILVFTSSFNPMKNTISGRQEKTVMKLIVDAETDKVLGASMCGPDAPEIMQGIA-VALKCGATKAQFDSTVGIHP 473 (499)
T ss_pred hccCCCEEEEEeecCccccccccCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhhcCcCCC
Confidence 0001 1110 1124579988886 489999999998 45666666 899988876 899999
Q ss_pred ccchhh
Q psy2951 439 CLGVVL 444 (1466)
Q Consensus 439 ~~~e~~ 444 (1466)
|++|.+
T Consensus 474 t~~E~~ 479 (499)
T PLN02507 474 SAAEEF 479 (499)
T ss_pred ChHHHH
Confidence 999998
|
|
| >PRK06116 glutathione reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=367.89 Aligned_cols=372 Identities=21% Similarity=0.295 Sum_probs=271.1
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCC-Cccch-----------------hcccC-------cc
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR-VKLSK-----------------QLDIK-------AD 96 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~~-~~~~~-----------------~~~~~-------~~ 96 (1466)
.++||+||||||||++||..|+++|++|.|++...-....... +..++ .+... ..
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 82 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAKRLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDWA 82 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccchhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCHH
Confidence 3689999999999999999999999999988753110000000 00000 00000 00
Q ss_pred -----------cccccChhhhhcCCeEEEeCceEEEeccccccEEEecCCcEEecCEEEEccCCCCCCCCCCCCCCcEEE
Q psy2951 97 -----------SILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFY 165 (1466)
Q Consensus 97 -----------~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~~~~~~~~ 165 (1466)
.+...+.+.+++.+++++.++.... + .+++++ +++++.||+||||||++|+.++ +++.+..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v--~--~~~v~~-~g~~~~~d~lViATGs~p~~p~-i~g~~~~~- 155 (450)
T PRK06116 83 KLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFV--D--AHTVEV-NGERYTADHILIATGGRPSIPD-IPGAEYGI- 155 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEc--c--CCEEEE-CCEEEEeCEEEEecCCCCCCCC-CCCcceeE-
Confidence 1112233445668999999876543 2 356777 6678999999999999997554 55554332
Q ss_pred ecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEEcCc
Q psy2951 166 LRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKA 245 (1466)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~ 245 (1466)
+..+...+. ..+++++|||+|++|+|+|..+++.|.+|+++++.+.++ +.+++++.+.+.+.|+++||++++++
T Consensus 156 --~~~~~~~~~---~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-~~~~~~~~~~l~~~L~~~GV~i~~~~ 229 (450)
T PRK06116 156 --TSDGFFALE---ELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL-RGFDPDIRETLVEEMEKKGIRLHTNA 229 (450)
T ss_pred --chhHhhCcc---ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc-cccCHHHHHHHHHHHHHCCcEEECCC
Confidence 223333222 235799999999999999999999999999999987665 46789999999999999999999999
Q ss_pred eEEEEEecCCCCeEEEEcCCCcEEeccEEEEeeccccCccc--cccCCceecCCccEEECCCCCcCCCCEEEeccccccc
Q psy2951 246 NVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 323 (1466)
Q Consensus 246 ~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~ 323 (1466)
+|.+++.++++.+ .+.+.+|+++++|.||+|+|++|+++. ++..+++++++|+|.||+++||++|+|||+|||++.+
T Consensus 230 ~V~~i~~~~~g~~-~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~ 308 (450)
T PRK06116 230 VPKAVEKNADGSL-TLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNTNVPGIYAVGDVTGRV 308 (450)
T ss_pred EEEEEEEcCCceE-EEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCCcCCCCEEEEeecCCCc
Confidence 9999987543323 466678889999999999999999985 5678899998999999999999999999999998643
Q ss_pred CccCCCCcceeccHHHHHHHHHHHHHHhcCCCC----CCCCCCc---ccccccceeeEEEEeecC------Cc---e---
Q psy2951 324 LHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT----SLSTIPF---FWTMLFGVGFRFAGYAAG------HT---Q--- 384 (1466)
Q Consensus 324 ~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~----~~~~~p~---~~s~~~~~~~~~~G~~~~------~~---~--- 384 (1466)
..+..|+.||+.+|+||++... .+..+|+ ..|....+ |.+.. .+ .
T Consensus 309 -----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~if~~p~~a~v-----Glte~~a~~~~~~~~~~~~~ 372 (450)
T PRK06116 309 -----------ELTPVAIAAGRRLSERLFNNKPDEKLDYSNIPTVVFSHPPIGTV-----GLTEEEAREQYGEDNVKVYR 372 (450)
T ss_pred -----------CcHHHHHHHHHHHHHHHhCCCCCCcCCcCCCCeEEeCCCccEEe-----eCCHHHHHHhCCCCcEEEEE
Confidence 3456899999999999997432 3456663 33333333 43220 11 0
Q ss_pred EEEe--c----ccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 385 VDIV--G----DLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 385 ~~~~--g----~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
..+. + .-+..+|.+++.+ +++|+|++++|. +++++.++ .+|+.+.+. ++++|||++|.+
T Consensus 373 ~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~-~ai~~~~t~~~l~~~~~~hPt~~e~~ 446 (450)
T PRK06116 373 SSFTPMYTALTGHRQPCLMKLVVVGKEEKVVGLHGIGFGADEMIQGFA-VAIKMGATKADFDNTVAIHPTAAEEF 446 (450)
T ss_pred EecchhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhcccccCCChHHHH
Confidence 1111 0 1135789999886 489999999998 45666776 899988876 799999999987
|
|
| >PRK06467 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-36 Score=363.73 Aligned_cols=391 Identities=21% Similarity=0.271 Sum_probs=276.6
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCC-CCCCCC-Cccchhc----------------cc-------Ccc
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN-FLPYDR-VKLSKQL----------------DI-------KAD 96 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~-~~~~~~-~~~~~~~----------------~~-------~~~ 96 (1466)
.++||+||||||||++||..|+++|.+|.|++..+.- ...... +..++.+ .. +..
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 82 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDID 82 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHH
Confidence 4699999999999999999999999999987753211 000000 1111110 00 011
Q ss_pred ccc-----------ccChhhhhcCCeEEEeCceEEEeccccccEEEecCC--cEEecCEEEEccCCCCCCCCCCCCCC-c
Q psy2951 97 SIL-----------LRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQADGVN-K 162 (1466)
Q Consensus 97 ~~~-----------~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~--~~~~~d~lviAtG~~~~~~~~~~~~~-~ 162 (1466)
.+. ......+++.+++++.++..+. +....++...++ .++.||+||||||++|+.+|.+++.. .
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~--~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~~~~~ 160 (471)
T PRK06467 83 KMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFT--GGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPHDDPR 160 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEc--cCCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCCCCCCCCc
Confidence 111 1122345677999999987654 332333444455 47999999999999998666555432 2
Q ss_pred EEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEE
Q psy2951 163 VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFV 242 (1466)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~ 242 (1466)
++ +..+...+. ..+++++|||+|++|+|+|..++++|.+||++++.+.+++ .+++++.+.+.+.|+++ |+++
T Consensus 161 v~---~~~~~~~~~---~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~-~~d~~~~~~~~~~l~~~-v~i~ 232 (471)
T PRK06467 161 IW---DSTDALELK---EVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIP-AADKDIVKVFTKRIKKQ-FNIM 232 (471)
T ss_pred EE---ChHHhhccc---cCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCC-cCCHHHHHHHHHHHhhc-eEEE
Confidence 22 344554443 2357999999999999999999999999999999887764 58899999999999988 9999
Q ss_pred cCceEEEEEecCCCCeEEEEcCC--C--cEEeccEEEEeeccccCccc--cccCCceecCCccEEECCCCCcCCCCEEEe
Q psy2951 243 MKANVSSFEKNEKNDVTAANLDN--G--TTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAG 316 (1466)
Q Consensus 243 ~~~~v~~i~~~~~~~~~~v~~~~--g--~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~~~iya~ 316 (1466)
+++++++++.+++ .+ .+.+.+ + +++++|.||+|+|++||+++ ++..+++++++|+|.||+++||+.|+|||+
T Consensus 233 ~~~~v~~i~~~~~-~~-~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t~~p~VyAi 310 (471)
T PRK06467 233 LETKVTAVEAKED-GI-YVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRTNVPHIFAI 310 (471)
T ss_pred cCCEEEEEEEcCC-EE-EEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCcccCCCCEEEe
Confidence 9999999986532 22 233322 2 46999999999999999985 467789999999999999999999999999
Q ss_pred cccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCCCC--CCCCCcccccccceeeEEEEeecCC------c----e
Q psy2951 317 GDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS--LSTIPFFWTMLFGVGFRFAGYAAGH------T----Q 384 (1466)
Q Consensus 317 GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~--~~~~p~~~s~~~~~~~~~~G~~~~~------~----~ 384 (1466)
|||++.+ ..+..|..||+.++.||++.... +..+|+. -.....+.++|.+... + .
T Consensus 311 GDv~~~~-----------~la~~A~~eG~~aa~~i~g~~~~~~~~~~p~~--~~~~p~ia~vGlte~ea~~~g~~~~~~~ 377 (471)
T PRK06467 311 GDIVGQP-----------MLAHKGVHEGHVAAEVIAGKKHYFDPKVIPSI--AYTEPEVAWVGLTEKEAKEEGIEYETAT 377 (471)
T ss_pred hhhcCCc-----------ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeE--EECCCceeEEECCHHHHHhcCCCeEEEE
Confidence 9998654 24568999999999999976543 3455532 1222334444543210 0 1
Q ss_pred EEEec------ccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh--ccc
Q psy2951 385 VDIVG------DLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL--GKL 447 (1466)
Q Consensus 385 ~~~~g------~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~--~~~ 447 (1466)
..+.. .-+..+|.+++.+ +++|+|++++|. +++++.++ .+|+.+.+. +++.|||++|.+ ++.
T Consensus 378 ~~~~~~~~~~~~~~~~g~~kli~d~~t~~ilG~~~vg~~a~e~i~~~a-~ai~~~~t~~~l~~~~~~hPt~~e~~~~a~~ 456 (471)
T PRK06467 378 FPWAASGRAIASDCADGMTKLIFDKETHRVLGGAIVGTNAGELLGEIG-LAIEMGCDAEDIALTIHAHPTLHESVGLAAE 456 (471)
T ss_pred EecCcchhhhhCCCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhhcccCCCChHHHHHHHHH
Confidence 11110 1135789988886 489999999998 45666666 899998875 789999999988 444
Q ss_pred CCCCccccCCC
Q psy2951 448 DYHGTITISPN 458 (1466)
Q Consensus 448 ~~~~~~~~~~~ 458 (1466)
.+.++.+|.|.
T Consensus 457 ~~~~~~~~~~~ 467 (471)
T PRK06467 457 AFEGSITDLPN 467 (471)
T ss_pred hhcCCcccCCC
Confidence 55666677654
|
|
| >PLN02546 glutathione reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-36 Score=363.54 Aligned_cols=376 Identities=18% Similarity=0.257 Sum_probs=271.5
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEc------CC-CCCC----CCCCccchh----------------ccc--
Q psy2951 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFIT------DE-NFLP----YDRVKLSKQ----------------LDI-- 93 (1466)
Q Consensus 43 ~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~------~~-~~~~----~~~~~~~~~----------------~~~-- 93 (1466)
+|||+||||||||+.||..++++|.+|.|+|.. ++ ..+. ..-+..++. +..
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~~ 158 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWKY 158 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCccc
Confidence 589999999999999999999999999998841 00 1000 000000111 000
Q ss_pred -----------------CcccccccChhhhhcCCeEEEeCceEEEeccccccEEEecCCcEEecCEEEEccCCCCCCCCC
Q psy2951 94 -----------------KADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQ 156 (1466)
Q Consensus 94 -----------------~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~ 156 (1466)
...++...+...+++.+++++.+.....+ . .++.+ +++.+.||+||||||++|..+ .
T Consensus 159 ~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd--~--~~V~v-~G~~~~~D~LVIATGs~p~~P-~ 232 (558)
T PLN02546 159 ETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVD--P--HTVDV-DGKLYTARNILIAVGGRPFIP-D 232 (558)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEcc--C--CEEEE-CCEEEECCEEEEeCCCCCCCC-C
Confidence 01112233455567789999998876543 2 45655 567899999999999999754 4
Q ss_pred CCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHh
Q psy2951 157 ADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFES 236 (1466)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~ 236 (1466)
+++.+.++ +.+++..+. ..+++++|||+|++|+|+|..|++.|.+|+++++.+.++ +.+++++.+.+.+.|++
T Consensus 233 IpG~~~v~---~~~~~l~~~---~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il-~~~d~~~~~~l~~~L~~ 305 (558)
T PLN02546 233 IPGIEHAI---DSDAALDLP---SKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVL-RGFDEEVRDFVAEQMSL 305 (558)
T ss_pred CCChhhcc---CHHHHHhcc---ccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccc-cccCHHHHHHHHHHHHH
Confidence 56654322 344444332 246899999999999999999999999999999987766 46889999999999999
Q ss_pred CCcEEEcCceEEEEEecCCCCeEEEEcCCCcEEeccEEEEeeccccCccc--cccCCceecCCccEEECCCCCcCCCCEE
Q psy2951 237 KGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVY 314 (1466)
Q Consensus 237 ~GV~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~~~iy 314 (1466)
+||++++++.+.+++..+++.+ .+.+++++...+|.||+++|++||+++ ++..|++++++|+|.||+++||++|+||
T Consensus 306 ~GV~i~~~~~v~~i~~~~~g~v-~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~Ts~p~IY 384 (558)
T PLN02546 306 RGIEFHTEESPQAIIKSADGSL-SLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRTSVPSIW 384 (558)
T ss_pred CCcEEEeCCEEEEEEEcCCCEE-EEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCceeCCCCEE
Confidence 9999999999999976433333 355555555568999999999999986 5778899988899999999999999999
Q ss_pred EecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCCC---CCCCCC---cccccccceeeEE-----EEeecCCc
Q psy2951 315 AGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT---SLSTIP---FFWTMLFGVGFRF-----AGYAAGHT 383 (1466)
Q Consensus 315 a~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~---~~~~~p---~~~s~~~~~~~~~-----~G~~~~~~ 383 (1466)
|+|||++.+ ..+..|..||+.+|.||++... .+..+| |.++....+|+.. .|......
T Consensus 385 AaGDv~~~~-----------~l~~~A~~~g~~~a~~i~g~~~~~~~~~~vp~~vft~Peia~VGlte~eA~~~g~~~~~~ 453 (558)
T PLN02546 385 AVGDVTDRI-----------NLTPVALMEGGALAKTLFGNEPTKPDYRAVPSAVFSQPPIGQVGLTEEQAIEEYGDVDVF 453 (558)
T ss_pred EeeccCCCc-----------ccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEeCCchHhhccCCHHHHHHcCCCeEEE
Confidence 999998754 3456899999999999997542 345666 3444544444310 00000000
Q ss_pred eEEEe------cccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 384 QVDIV------GDLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 384 ~~~~~------g~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
...+. -.....+|.+++.+ +++|+|++++|. +++++.++ .+|+++.+. ++++|||++|.+
T Consensus 454 ~~~~~~~~~~~~~~~~~g~~Klv~d~~t~~ILGa~ivG~~a~elI~~~a-~ai~~~~t~~dl~~~~~~hPT~~E~~ 528 (558)
T PLN02546 454 TANFRPLKATLSGLPDRVFMKLIVCAKTNKVLGVHMCGEDAPEIIQGFA-VAVKAGLTKADFDATVGIHPTAAEEF 528 (558)
T ss_pred EEecccchhhhhCCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhhcccCCCChHHHH
Confidence 00111 11134689988875 489999999998 55667777 999999876 799999999998
|
|
| >PRK06370 mercuric reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=361.08 Aligned_cols=378 Identities=20% Similarity=0.317 Sum_probs=268.9
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCC-Cccchh----------------cc--------cCcc
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR-VKLSKQ----------------LD--------IKAD 96 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~~-~~~~~~----------------~~--------~~~~ 96 (1466)
.++||+||||||||++||..|++.|+++.|++...-...-... +..++. ++ .+..
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 83 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVDFK 83 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccCHH
Confidence 4699999999999999999999999999988754211100000 000110 00 1111
Q ss_pred cc-----------cccChhhhhcC-CeEEEeCceEEEeccccccEEEecCCcEEecCEEEEccCCCCCCCCCCCCCCcEE
Q psy2951 97 SI-----------LLRTEEFYKDN-DIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVF 164 (1466)
Q Consensus 97 ~~-----------~~~~~~~~~~~-~v~~~~~~~v~~~~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~~~~~~~ 164 (1466)
.+ ...+..++++. +++++.++.++. +.+++.+ ++.++.||+||||||++|+.++ +++.+...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~----~~~~v~v-~~~~~~~d~lViATGs~p~~p~-i~G~~~~~ 157 (463)
T PRK06370 84 AVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFE----SPNTVRV-GGETLRAKRIFINTGARAAIPP-IPGLDEVG 157 (463)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEc----cCCEEEE-CcEEEEeCEEEEcCCCCCCCCC-CCCCCcCc
Confidence 11 12334556666 999999987653 2356666 4567999999999999998654 55554322
Q ss_pred EecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEEcC
Q psy2951 165 YLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMK 244 (1466)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~ 244 (1466)
.+ +..+...+. ..+++++|||+|++|+|+|..+++.|.+|+++++.+.+++ .+++++.+.+.+.|++.||+++++
T Consensus 158 ~~-~~~~~~~~~---~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~-~~~~~~~~~l~~~l~~~GV~i~~~ 232 (463)
T PRK06370 158 YL-TNETIFSLD---ELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLP-REDEDVAAAVREILEREGIDVRLN 232 (463)
T ss_pred eE-cchHhhCcc---ccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCc-ccCHHHHHHHHHHHHhCCCEEEeC
Confidence 22 223333222 2358999999999999999999999999999999887664 568889999999999999999999
Q ss_pred ceEEEEEecCCCCeEEEEc-CCCcEEeccEEEEeeccccCcc-c-cccCCceecCCccEEECCCCCcCCCCEEEeccccc
Q psy2951 245 ANVSSFEKNEKNDVTAANL-DNGTTIPADLVIVGIGTVLNTN-Y-LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAY 321 (1466)
Q Consensus 245 ~~v~~i~~~~~~~~~~v~~-~~g~~i~~D~Vi~a~G~~p~~~-~-l~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD~~~ 321 (1466)
++|.+++.++++....+.. +++.++++|.||+|+|++||++ + ++..|++++++|+|.||+++||+.|+|||+|||+.
T Consensus 233 ~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l~t~~~~IyAiGD~~~ 312 (463)
T PRK06370 233 AECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLRTTNPGIYAAGDCNG 312 (463)
T ss_pred CEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCCcCCCCCEEEeeecCC
Confidence 9999998654222122222 3346799999999999999998 4 57788999999999999999999999999999986
Q ss_pred ccCccCCCCcceeccHHHHHHHHHHHHHHhcCC-CC--CCCCCCcccccccceeeEEEEeecC-----CceE-----EEe
Q psy2951 322 APLHSFYNKNASIGHYQLAQYHGRIAALNMVEK-KT--SLSTIPFFWTMLFGVGFRFAGYAAG-----HTQV-----DIV 388 (1466)
Q Consensus 322 ~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~-~~--~~~~~p~~~s~~~~~~~~~~G~~~~-----~~~~-----~~~ 388 (1466)
.+. ....|..||+++++||++. .. .+..+|+. -.....+.++|.+.. ..++ .+.
T Consensus 313 ~~~-----------~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~~--~~~~p~ia~vG~te~~a~~~g~~~~~~~~~~~ 379 (463)
T PRK06370 313 RGA-----------FTHTAYNDARIVAANLLDGGRRKVSDRIVPYA--TYTDPPLARVGMTEAEARKSGRRVLVGTRPMT 379 (463)
T ss_pred Ccc-----------cHHHHHHHHHHHHHHHhCCCCCCcccccCCeE--EEcCCCcEeeeCCHHHHHHcCCCeEEEEEecC
Confidence 542 3457999999999999875 22 23344431 111223444454321 0011 111
Q ss_pred ------cccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 389 ------GDLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 389 ------g~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
-.-+..+|.+++.+ +++|+|++++|. +++++.++ .+|+.+.+. ++++|||++|.+
T Consensus 380 ~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~-~ai~~~~t~~~l~~~~~~hPt~~e~~ 449 (463)
T PRK06370 380 RVGRAVEKGETQGFMKVVVDADTDRILGATILGVHGDEMIHEIL-DAMYAGAPYTTLSRAIHIHPTVSELI 449 (463)
T ss_pred cchhHHhcCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhcCcccCCChHHHH
Confidence 01135789999887 489999999998 55666666 999998876 899999999988
|
|
| >TIGR01423 trypano_reduc trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=358.08 Aligned_cols=373 Identities=20% Similarity=0.269 Sum_probs=269.1
Q ss_pred CCCcEEEECCchHHHHHHHHHHhc-CCCCcEEEEcC------CCCCC----CCCCccchhc----------------cc-
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQN-GFTGKLYFITD------ENFLP----YDRVKLSKQL----------------DI- 93 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~-g~~v~i~~~~~------~~~~~----~~~~~~~~~~----------------~~- 93 (1466)
+++||+||||||||+.||..++++ |.+|.|++.+. +..+. ..-+..++.+ ..
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~ 81 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE 81 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence 579999999999999999999997 89999987530 01010 0001111110 00
Q ss_pred --------Ccc-----------cccccChhhhhc-CCeEEEeCceEEEeccccccEEEecC--------CcEEecCEEEE
Q psy2951 94 --------KAD-----------SILLRTEEFYKD-NDIHVIKGKKIISDSELNEKKIKLQD--------GTSIDFTKIYL 145 (1466)
Q Consensus 94 --------~~~-----------~~~~~~~~~~~~-~~v~~~~~~~v~~~~~~~~~~v~~~~--------~~~~~~d~lvi 145 (1466)
+.. .+.....+++++ .+++++.|...+.+ .+++.+.. .+.+.||+|||
T Consensus 82 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~----~~~v~V~~~~~~~~~~~~~~~~d~lII 157 (486)
T TIGR01423 82 FDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALED----KNVVLVRESADPKSAVKERLQAEHILL 157 (486)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcc----CCEEEEeeccCCCCCcceEEECCEEEE
Confidence 000 111122334555 49999999977653 24555531 24799999999
Q ss_pred ccCCCCCCCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhC---CCEEEEEeecCccccccc
Q psy2951 146 ATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASK---VKSVTVVGRGAVPFQESL 222 (1466)
Q Consensus 146 AtG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~---g~~Vtlv~~~~~~~~~~~ 222 (1466)
|||++|..++ +++.+.++ +.++...+. ..+++++|||||++|+|+|..+..+ |.+||++++.+.++ +.+
T Consensus 158 ATGs~p~~p~-i~G~~~~~---~~~~~~~~~---~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il-~~~ 229 (486)
T TIGR01423 158 ATGSWPQMLG-IPGIEHCI---SSNEAFYLD---EPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL-RGF 229 (486)
T ss_pred ecCCCCCCCC-CCChhhee---chhhhhccc---cCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc-ccc
Confidence 9999997554 56654433 334444333 2468999999999999999877655 99999999988776 568
Q ss_pred CHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCCeEEEEcCCCcEEeccEEEEeeccccCcccc--ccCCceecCCccE
Q psy2951 223 GKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAV 300 (1466)
Q Consensus 223 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~l--~~~gl~~~~~g~i 300 (1466)
++++.+.+.+.|+++||++++++.+++++.++++ ...+.+.+++++++|.|++|+|++||++++ +..+++++++|+|
T Consensus 230 d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~-~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I 308 (486)
T TIGR01423 230 DSTLRKELTKQLRANGINIMTNENPAKVTLNADG-SKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAI 308 (486)
T ss_pred CHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCc-eEEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCE
Confidence 9999999999999999999999999999865332 334566678899999999999999999864 6788999989999
Q ss_pred EECCCCCcCCCCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCCC---CCCCCC---cccccccceeeE
Q psy2951 301 VVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT---SLSTIP---FFWTMLFGVGFR 374 (1466)
Q Consensus 301 ~vd~~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~---~~~~~p---~~~s~~~~~~~~ 374 (1466)
.||+++||+.|||||+|||++.++ .+..|..||+.+++||++... .+..+| |..+....+|+
T Consensus 309 ~Vd~~l~Ts~~~IyA~GDv~~~~~-----------l~~~A~~qG~~aa~ni~g~~~~~~~~~~vp~~vft~peia~vGl- 376 (486)
T TIGR01423 309 QVDEFSRTNVPNIYAIGDVTDRVM-----------LTPVAINEGAAFVDTVFGNKPRKTDHTRVASAVFSIPPIGTCGL- 376 (486)
T ss_pred ecCCCCcCCCCCEEEeeecCCCcc-----------cHHHHHHHHHHHHHHHhCCCCcccCCCCCCEEEeCCCceEEeeC-
Confidence 999999999999999999987543 345799999999999997532 344566 33444444443
Q ss_pred EEEeecC-----Cce-----EE-------EecccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-
Q psy2951 375 FAGYAAG-----HTQ-----VD-------IVGDLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS- 432 (1466)
Q Consensus 375 ~~G~~~~-----~~~-----~~-------~~g~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~- 432 (1466)
+.. ... .. +.+.....+|.+++.+ +++|+|++++|. ++++..++ .+|+.+.+.
T Consensus 377 ----te~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~~~~iLGa~ivg~~a~elI~~~~-~ai~~~~t~~ 451 (486)
T TIGR01423 377 ----VEEDAAKKFEKVAVYESSFTPLMHNISGSKYKKFVAKIVTNHADGTVLGVHLLGDSSPEIIQAVG-ICLKLNAKIS 451 (486)
T ss_pred ----CHHHHHhcCCceEEEEEeeCchhhhhccCccCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHcCCCHH
Confidence 221 000 00 1111123578888886 489999999998 55667777 999988775
Q ss_pred ----ccccCcccchhh
Q psy2951 433 ----LPHSHRCLGVVL 444 (1466)
Q Consensus 433 ----~~~~~p~~~e~~ 444 (1466)
++|+|||++|.+
T Consensus 452 dl~~~~~~hPt~sE~~ 467 (486)
T TIGR01423 452 DFYNTIGVHPTSAEEL 467 (486)
T ss_pred HHhhcccCCCCcHHHH
Confidence 799999999988
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. |
| >COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=347.36 Aligned_cols=410 Identities=23% Similarity=0.350 Sum_probs=336.6
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCC-CccEEEEcCCCCCCCCCCccchhcc--cCcccccccCHhHhhhCCcEEEEceEE
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGF-TGKLYFITDENFLPYDRVKLSKQLD--IKADSILLRTEEFYKDNDIHVIKGKKI 671 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~-~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~gv~~~~~~~v 671 (1466)
+.+++|||.|+||..+...+.+... ...|+++..+++..|++..++..+. .+.+++.....+|++++||+++.++.|
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v 82 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKV 82 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCee
Confidence 5789999999999999999888433 4679999999999999999998876 577888888999999999999999999
Q ss_pred EEeccccccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCC--cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHH
Q psy2951 672 ISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEA 749 (1466)
Q Consensus 672 ~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~ 749 (1466)
+.+ |+.++.|+++.|.++.||+|||||||.|+.+++| |.+ +++.+++++|+..+.......++.+|||||..|+|+
T Consensus 83 ~~i-dr~~k~V~t~~g~~~~YDkLilATGS~pfi~PiP-G~~~~~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEa 160 (793)
T COG1251 83 IQI-DRANKVVTTDAGRTVSYDKLIIATGSYPFILPIP-GSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEA 160 (793)
T ss_pred EEe-ccCcceEEccCCcEeecceeEEecCccccccCCC-CCCCCCeeEEecHHHHHHHHHHHhccCCcEEEccchhhhHH
Confidence 999 9999999999999999999999999999999999 888 999999999998887776667778999999999999
Q ss_pred HHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEc
Q psy2951 750 AAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVG 829 (1466)
Q Consensus 750 A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a 829 (1466)
|..|...|.++++++..+.++.+++++.....|++.++++|++++++...+++.. .+.+..+.++||..+++|.||+|
T Consensus 161 A~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g--~~~~~~vr~~DG~~i~ad~VV~a 238 (793)
T COG1251 161 ARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVG--EDKVEGVRFADGTEIPADLVVMA 238 (793)
T ss_pred HHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhhc--CcceeeEeecCCCcccceeEEEe
Confidence 9999999999999999999999999999999999999999999999999988872 66788999999999999999999
Q ss_pred cccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCC-
Q psy2951 830 IGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT- 908 (1466)
Q Consensus 830 ~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~- 908 (1466)
+|.+||.++..++|+.+++ .|.||++|||++|+|||+|+|+......+ ++...+..|++++|+++++...
T Consensus 239 ~GIrPn~ela~~aGlavnr--GIvvnd~mqTsdpdIYAvGEcae~~g~~y-------GLVaP~yeq~~v~a~hl~~~~~~ 309 (793)
T COG1251 239 VGIRPNDELAKEAGLAVNR--GIVVNDYMQTSDPDIYAVGECAEHRGKVY-------GLVAPLYEQAKVLADHLCGGEAE 309 (793)
T ss_pred cccccccHhHHhcCcCcCC--CeeecccccccCCCeeehhhHHHhcCccc-------eehhHHHHHHHHHHHHhccCccc
Confidence 9999999999999999988 59999999999999999999998866552 4667899999999999998755
Q ss_pred cCc-ccCeeeeeecCceeEEeeccC--CCCceeEecccccceEEEEEecCCeEEEEEeecCchhhhhhhhh----hhhhh
Q psy2951 909 SLS-TIPFFWTMLFGVGFRFAGYAA--GHTQVDIVGDLEALKFTAYYSNADKVLAILTVGMDPLAAQFAER----NIYAV 981 (1466)
Q Consensus 909 ~~~-~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~g~~~~~~~~~~g----~~~a~ 981 (1466)
.|. .+++....+.|..+-..|.-+ .-.+.+.-.|.....|.++++++|+++|+...|....--++.+- .-...
T Consensus 310 ~y~gsv~stkLKv~Gvdl~S~GD~~e~~~~~~iv~~D~~~~iYKrlvL~dd~IvgavL~GDt~d~~~l~~li~~~~~~se 389 (793)
T COG1251 310 AYEGSVTSTKLKVSGVDVFSAGDFQETEGAESIVFRDEQRGIYKKLVLKDDKIVGAVLYGDTSDGGWLLDLILKGADISE 389 (793)
T ss_pred ccccccchhhhcccccceeeccchhhcCCCceEEEecccccceeEEEEeCCeEEEEEEEeecccchHHHHHHhcCCCccc
Confidence 343 333332234455554555332 12233444455566789999999999999999987655554321 00000
Q ss_pred ---cCCCCCC-CccccceeecCCEEEcCCCCceeecCCCccccC
Q psy2951 982 ---GTKCSHY-GAPLVKGSLGDGRVRCPWHGACFNIATGDIEDF 1021 (1466)
Q Consensus 982 ---~~~C~h~-g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~ 1021 (1466)
...-|+. ..++.-..+.++...|. |+++..|+++..
T Consensus 390 ~r~~li~~~~~~~~~~v~~lpd~~~IC~----Cn~VtKG~I~~a 429 (793)
T COG1251 390 IRDTLILPQGSAPSLGVAALPDSAQICG----CNGVTKGAIIGA 429 (793)
T ss_pred cchhhccccccCCccchhhCCCCCeeec----CCCccHHHHHHH
Confidence 0011221 33344455667888896 555678888764
|
|
| >TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=360.71 Aligned_cols=372 Identities=19% Similarity=0.254 Sum_probs=268.8
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCC-CCCCccchh----------------cccC-----------
Q psy2951 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP-YDRVKLSKQ----------------LDIK----------- 94 (1466)
Q Consensus 43 ~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~-~~~~~~~~~----------------~~~~----------- 94 (1466)
++||+||||||||++||..++++|++|.|++.+.-...- ...+..++. +...
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 81 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEPRVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWKKL 81 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHHHH
Confidence 589999999999999999999999999998753211000 000111110 0000
Q ss_pred -------cccccccChhhhhcCCeEEEeCceEEEeccccccEEEecCCcEEecCEEEEccCCCCCCCCCCCCCCcEEEec
Q psy2951 95 -------ADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLR 167 (1466)
Q Consensus 95 -------~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~~~~~~~~~~ 167 (1466)
...+...+...+++.+++++.++.... +.....+. .++..+.||+||||||++|..++ +++.+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v--~~~~v~v~-~~g~~~~~d~lIiATGs~p~~p~-i~G~~~~~--- 154 (446)
T TIGR01424 82 LQKKDDEIARLSGLYKRLLANAGVELLEGRARLV--GPNTVEVL-QDGTTYTAKKILIAVGGRPQKPN-LPGHELGI--- 154 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEe--cCCEEEEe-cCCeEEEcCEEEEecCCcCCCCC-CCCcccee---
Confidence 011222344556778999999875443 33323332 35678999999999999997554 55544322
Q ss_pred CHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEEcCceE
Q psy2951 168 TVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANV 247 (1466)
Q Consensus 168 ~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v 247 (1466)
+..+...+. ..+++++|||+|++|+|+|..+++.|.+|+++++.+.++ +.+++++.+.+.+.|++.||++++++++
T Consensus 155 ~~~~~~~l~---~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l-~~~d~~~~~~l~~~l~~~gV~i~~~~~v 230 (446)
T TIGR01424 155 TSNEAFHLP---TLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL-RGFDDDMRALLARNMEGRGIRIHPQTSL 230 (446)
T ss_pred chHHhhccc---ccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC-cccCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence 334444333 236799999999999999999999999999999988765 4578899999999999999999999999
Q ss_pred EEEEecCCCCeEEEEcCCCcEEeccEEEEeeccccCccc--cccCCceecCCccEEECCCCCcCCCCEEEecccccccCc
Q psy2951 248 SSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLH 325 (1466)
Q Consensus 248 ~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~ 325 (1466)
.+++..+++ ..+.+.+++++++|.||+|+|++||++. ++..+++++++|+|.||+++||+.|||||+|||++.+
T Consensus 231 ~~i~~~~~~--~~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~-- 306 (446)
T TIGR01424 231 TSITKTDDG--LKVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSRTSIPSIYAVGDVTDRI-- 306 (446)
T ss_pred EEEEEcCCe--EEEEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCccCCCCEEEeeccCCCc--
Confidence 999764322 3455667889999999999999999985 5778899988899999999999999999999998643
Q ss_pred cCCCCcceeccHHHHHHHHHHHHHHhcCCC---CCCCCCCc---ccccccceeeEEEEeecC------CceE-----EEe
Q psy2951 326 SFYNKNASIGHYQLAQYHGRIAALNMVEKK---TSLSTIPF---FWTMLFGVGFRFAGYAAG------HTQV-----DIV 388 (1466)
Q Consensus 326 ~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~---~~~~~~p~---~~s~~~~~~~~~~G~~~~------~~~~-----~~~ 388 (1466)
..+..|..||++++.|+++.. ..+..+|+ ..++.. ++|.+.. ...+ .+.
T Consensus 307 ---------~l~~~A~~~g~~~a~~i~~~~~~~~~~~~~p~~if~~p~ia-----~vG~te~~a~~~~~~~~~~~~~~~~ 372 (446)
T TIGR01424 307 ---------NLTPVAIMEATCFANTEFGNNPTKFDHDLIATAVFSQPPLG-----TVGLTEEEAREKFTGDILVYRAGFR 372 (446)
T ss_pred ---------cchhHHHHHHHHHHHHHhcCCCCccCcCCCCeEEeCCchhE-----EEECCHHHHHhhcCCCEEEEEEecC
Confidence 345689999999999999743 23345663 333333 3343220 0111 110
Q ss_pred c------ccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 389 G------DLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 389 g------~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
. .-+..+|.+++.+ +++|+|++++|. +++++.++ .+|+.+.+. ++|+|||++|.+
T Consensus 373 ~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~-~ai~~~~t~~~l~~~~~~hPt~~e~~ 442 (446)
T TIGR01424 373 PMKNTFSGRQEKTLMKLVVDEKDDKVLGAHMVGPDAAEIIQGIA-IALKMGATKADFDSTVGIHPSSAEEF 442 (446)
T ss_pred chHhHhhcCCCceEEEEEEeCCCCEEEEEEEECCCHHHHHHHHH-HHHHcCCCHHHHhhccccCCChHHHH
Confidence 0 1134689998886 489999999998 55666666 999999876 899999999987
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. |
| >PTZ00058 glutathione reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=357.22 Aligned_cols=388 Identities=18% Similarity=0.214 Sum_probs=269.9
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCC-CCccchh----------------ccc------Ccc-
Q psy2951 41 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD-RVKLSKQ----------------LDI------KAD- 96 (1466)
Q Consensus 41 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~-~~~~~~~----------------~~~------~~~- 96 (1466)
..++||+||||||||++||..+++.|.+|.|+|.+.-...-.. .+..++. ++. +..
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~~~ 125 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDYLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNLPL 125 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEecccccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCHHH
Confidence 4578999999999999999999999999988875421100000 0000000 000 000
Q ss_pred ----------cccccChhhhhcCCeEEEeCceEEEeccc------------------cccEE------EecCCcEEecCE
Q psy2951 97 ----------SILLRTEEFYKDNDIHVIKGKKIISDSEL------------------NEKKI------KLQDGTSIDFTK 142 (1466)
Q Consensus 97 ----------~~~~~~~~~~~~~~v~~~~~~~v~~~~~~------------------~~~~v------~~~~~~~~~~d~ 142 (1466)
.+...+.+.+++.+|+++.|+..+..... ...++ .++++.+++||+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~i~ad~ 205 (561)
T PTZ00058 126 LVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEGKN 205 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCCcEEECCE
Confidence 11122344566789999999986653210 01112 124567899999
Q ss_pred EEEccCCCCCCCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCccccccc
Q psy2951 143 IYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESL 222 (1466)
Q Consensus 143 lviAtG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~ 222 (1466)
||||||++|+.+ .+++.+.++ +.++...+. .+++++|||+|++|+|+|..++++|.+||++++.+.++ +.+
T Consensus 206 lVIATGS~P~~P-~IpG~~~v~---ts~~~~~l~----~pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il-~~~ 276 (561)
T PTZ00058 206 ILIAVGNKPIFP-DVKGKEFTI---SSDDFFKIK----EAKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL-RKF 276 (561)
T ss_pred EEEecCCCCCCC-CCCCceeEE---EHHHHhhcc----CCCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc-ccC
Confidence 999999999754 456554322 334444332 26899999999999999999999999999999988766 568
Q ss_pred CHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCCeEEEEcCCCcEEeccEEEEeeccccCccccccC--CceecCCccE
Q psy2951 223 GKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGK--GVELNGQKAV 300 (1466)
Q Consensus 223 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~l~~~--gl~~~~~g~i 300 (1466)
++++.+.+.+.|+++||++++++.+.++++++++.+..+..++++++++|.|++|+|++||++++... ++. +++|+|
T Consensus 277 d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~-~~~G~I 355 (561)
T PTZ00058 277 DETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIK-TPKGYI 355 (561)
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCccccCcccccee-cCCCeE
Confidence 89999999999999999999999999998654333433333444579999999999999999976433 333 457899
Q ss_pred EECCCCCcCCCCEEEecccccccC------------------cc----CCCCcc-eeccHHHHHHHHHHHHHHhcCCC--
Q psy2951 301 VVNEYLETNVPGVYAGGDIAYAPL------------------HS----FYNKNA-SIGHYQLAQYHGRIAALNMVEKK-- 355 (1466)
Q Consensus 301 ~vd~~~~t~~~~iya~GD~~~~~~------------------~~----~~g~~~-~~~~~~~A~~~g~~aa~~i~~~~-- 355 (1466)
.||+++||+.|+|||+|||+..+. +. ..+.+. .+..+..|..||++++.||++..
T Consensus 356 ~VDe~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g~~~~ 435 (561)
T PTZ00058 356 KVDDNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGPFSR 435 (561)
T ss_pred EECcCCccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999998321 11 112222 36778889999999999999752
Q ss_pred -CCCCCCC---cccccccceeeEEEEeecC-------CceE-----EEe--------cc--cCCCeEEEEEEc--CCEEE
Q psy2951 356 -TSLSTIP---FFWTMLFGVGFRFAGYAAG-------HTQV-----DIV--------GD--LEALKFTAYYSN--ADKVL 407 (1466)
Q Consensus 356 -~~~~~~p---~~~s~~~~~~~~~~G~~~~-------~~~~-----~~~--------g~--~~~~~~~~~~~~--~~~i~ 407 (1466)
.++..+| |..++...+|+ +.. .+.+ .+. .. ....+|.+++.+ +++|+
T Consensus 436 ~~~~~~ip~~vft~peiA~vGl-----te~eA~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~t~~IL 510 (561)
T PTZ00058 436 TTNYKLIPSVIFSHPPIGTIGL-----SEQEAIDIYGKENVKIYESRFTNLFFSVYDMDPAQKEKTYLKLVCVGKEELIK 510 (561)
T ss_pred ccCCCCCCeEEeCCchheeeeC-----CHHHHHHhcCCCcEEEEEeecchhhhhhhcccccCCCCeEEEEEEECCCCEEE
Confidence 2344566 33444444443 221 0111 110 00 124688888876 48999
Q ss_pred EEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 408 AILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 408 g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
|++++|. +++++.++ .+|+++.+. +++.|||++|.+
T Consensus 511 G~~ivG~~a~elI~~~a-~ai~~~~t~~dl~~~~~~hPt~~e~~ 553 (561)
T PTZ00058 511 GLHIVGLNADEILQGFA-VALKMNATKADFDETIPIHPTAAEEF 553 (561)
T ss_pred EEEEECCCHHHHHHHHH-HHHHcCCCHHHHhhcccCCCChHHHH
Confidence 9999998 45666666 999988775 899999999987
|
|
| >PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=360.43 Aligned_cols=374 Identities=20% Similarity=0.262 Sum_probs=271.6
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCC--CCCCCCccchhc-----------------------ccCc
Q psy2951 41 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENF--LPYDRVKLSKQL-----------------------DIKA 95 (1466)
Q Consensus 41 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~--~~~~~~~~~~~~-----------------------~~~~ 95 (1466)
+.++||+||||||||++||+.|++.|+++.|++....-. .....+..++.+ ..+.
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITF 82 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCH
Confidence 456999999999999999999999999998877532210 001111111110 0001
Q ss_pred ccc-----------cccChhhhhcCCeEEEeCceEEEeccccccEEEecCCc--EEecCEEEEccCCCCCCCCCCCCC-C
Q psy2951 96 DSI-----------LLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGT--SIDFTKIYLATGSSPRTISQADGV-N 161 (1466)
Q Consensus 96 ~~~-----------~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~--~~~~d~lviAtG~~~~~~~~~~~~-~ 161 (1466)
.++ ...+.+++++.+++++.++.... +....++...++. .+.||+||||||++|..++..+.. .
T Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~--~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p~~~~~~~~ 160 (461)
T PRK05249 83 ADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFV--DPHTVEVECPDGEVETLTADKIVIATGSRPYRPPDVDFDHP 160 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEe--cCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCCCC
Confidence 111 11233456678999999886543 3344555555554 699999999999999866544322 2
Q ss_pred cEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEE
Q psy2951 162 KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKF 241 (1466)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i 241 (1466)
.++ +..+...+. ..+++++|||+|++|+|+|..+++.|.+|+++++.+.++ +.+++++.+.+.+.++++||++
T Consensus 161 ~v~---~~~~~~~~~---~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-~~~d~~~~~~l~~~l~~~gI~v 233 (461)
T PRK05249 161 RIY---DSDSILSLD---HLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL-SFLDDEISDALSYHLRDSGVTI 233 (461)
T ss_pred eEE---cHHHhhchh---hcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC-CcCCHHHHHHHHHHHHHcCCEE
Confidence 222 333333332 246899999999999999999999999999999988776 4688999999999999999999
Q ss_pred EcCceEEEEEecCCCCeEEEEcCCCcEEeccEEEEeeccccCccc--cccCCceecCCccEEECCCCCcCCCCEEEeccc
Q psy2951 242 VMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 319 (1466)
Q Consensus 242 ~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD~ 319 (1466)
++++.+++++.+++ . ..+.+.+++++++|.|++|+|++||+++ ++..+++++++|+|.||+++||+.|+|||+|||
T Consensus 234 ~~~~~v~~i~~~~~-~-~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyAiGD~ 311 (461)
T PRK05249 234 RHNEEVEKVEGGDD-G-VIVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQTAVPHIYAVGDV 311 (461)
T ss_pred EECCEEEEEEEeCC-e-EEEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCcccCCCCEEEeeec
Confidence 99999999986432 2 3355677888999999999999999985 567889999889999999999999999999999
Q ss_pred ccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCCC--CCCCCCc---ccccccceeeEEEEeecC------C------
Q psy2951 320 AYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT--SLSTIPF---FWTMLFGVGFRFAGYAAG------H------ 382 (1466)
Q Consensus 320 ~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~--~~~~~p~---~~s~~~~~~~~~~G~~~~------~------ 382 (1466)
++.+ ..+..|..||+.+|.||++... .+..+|. ..++...+| .+.. .
T Consensus 312 ~~~~-----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~i~~~p~ia~vG-----~te~~a~~~g~~~~~~~ 375 (461)
T PRK05249 312 IGFP-----------SLASASMDQGRIAAQHAVGEATAHLIEDIPTGIYTIPEISSVG-----KTEQELTAAKVPYEVGR 375 (461)
T ss_pred CCCc-----------ccHhHHHHHHHHHHHHHcCCCcccccCCCCeEEECCCcceEec-----CCHHHHHHcCCCeEEEE
Confidence 8654 2456799999999999997543 3445563 233333333 3220 0
Q ss_pred ------ceEEEecccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 383 ------TQVDIVGDLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 383 ------~~~~~~g~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
.+..+. .+..+|.+++.+ +++|+|++++|. +++++.++ .+|+.+.+. ++++|||++|.+
T Consensus 376 ~~~~~~~~~~~~--~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~-~ai~~~~t~~~l~~~~~~~Pt~~e~~ 449 (461)
T PRK05249 376 ARFKELARAQIA--GDNVGMLKILFHRETLEILGVHCFGERATEIIHIGQ-AIMEQKGTIEYFVNTTFNYPTMAEAY 449 (461)
T ss_pred Eccccccceeec--CCCCcEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhcCccCCCCHHHHH
Confidence 011111 135689988886 489999999998 45666666 999988876 899999999987
|
|
| >COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=341.16 Aligned_cols=308 Identities=21% Similarity=0.351 Sum_probs=261.9
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcc-cCcccccccCHhHhhhC-CcEEEEceEE
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD-IKADSILLRTEEFYKDN-DIHVIKGKKI 671 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-gv~~~~~~~v 671 (1466)
.+++|||||||++|+.+|..|.+...+++|+++++.+++.+.+.......+ .+..++...+...++.. ++++++++ |
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~~-V 80 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQGE-V 80 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEEE-E
Confidence 368999999999999999999997425779999999998887655444444 66778888888888855 59999999 9
Q ss_pred EEeccccccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCC-cEEEecCHHHHHhhcccCC--------CC-----CcE
Q psy2951 672 ISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-KVFYLRTVEDANNIAPHIT--------PE-----SNV 737 (1466)
Q Consensus 672 ~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~--------~~-----~~v 737 (1466)
+.| |.++++|++.++..+.||+||||+|+++..+.+| |.. ..+.+++++++.+++.++. .. .++
T Consensus 81 ~~I-D~~~k~V~~~~~~~i~YD~LVvalGs~~~~fgi~-G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti 158 (405)
T COG1252 81 TDI-DRDAKKVTLADLGEISYDYLVVALGSETNYFGIP-GAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTI 158 (405)
T ss_pred EEE-cccCCEEEeCCCccccccEEEEecCCcCCcCCCC-CHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEE
Confidence 999 9999999999888999999999999999999999 854 8889999999988765542 12 269
Q ss_pred EEECCChHHHHHHHHHhccC-------------CeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEe
Q psy2951 738 VVIGSSFIGMEAAAFCASKV-------------KSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEK 804 (1466)
Q Consensus 738 vVvG~G~~g~e~A~~l~~~g-------------~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~ 804 (1466)
+|+|||++|+|+|.+|+++- .+|+|+++.++.+ +.++++++.+.++.|+++||++++++.|+++++
T Consensus 159 ~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL-p~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~ 237 (405)
T COG1252 159 VIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL-PMFPPKLSKYAERALEKLGVEVLLGTPVTEVTP 237 (405)
T ss_pred EEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc-cCCCHHHHHHHHHHHHHCCCEEEcCCceEEECC
Confidence 99999999999998887542 3899999999988 689999999999999999999999999999994
Q ss_pred cCCCceEEEECCCCc-EEecCEEEEccccccCcccccc-CCceeeCCCcEEeCCCCCC-CCCCeEEeccccccCCcccCC
Q psy2951 805 NEKNDVTAANLDNGT-TIPADLVIVGIGTVLNTNYLDG-KGVELNGQKAVVVNEYLET-NVPGVYAGGDIAYAPLHSFYN 881 (1466)
Q Consensus 805 ~~~~~~~~v~~~~g~-~i~~D~vi~a~G~~p~~~~~~~-~gl~~~~~G~i~vd~~~~t-~~~~iya~GD~~~~~~~~~~~ 881 (1466)
+ .+.+++|. +|++|++||++|.+++ +++++ .+++.|+.|++.||++|++ ++|+|||+|||+..+..
T Consensus 238 ~------~v~~~~g~~~I~~~tvvWaaGv~a~-~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~---- 306 (405)
T COG1252 238 D------GVTLKDGEEEIPADTVVWAAGVRAS-PLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDP---- 306 (405)
T ss_pred C------cEEEccCCeeEecCEEEEcCCCcCC-hhhhhcChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCC----
Confidence 3 57788887 4999999999999998 57776 4788899999999999996 69999999999988763
Q ss_pred ceeeeccHHHHHHHHHHHHHHhccCCCcCcccCeee
Q psy2951 882 KNASIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFW 917 (1466)
Q Consensus 882 ~~~~~~~~~~A~~~g~~aA~~i~~~~~~~~~~~~~~ 917 (1466)
.+.++.++.|.+||+.+|.||.......+..||-+
T Consensus 307 -~p~P~tAQ~A~Qqg~~~a~ni~~~l~g~~l~~f~y 341 (405)
T COG1252 307 -RPVPPTAQAAHQQGEYAAKNIKARLKGKPLKPFKY 341 (405)
T ss_pred -CCCCChhHHHHHHHHHHHHHHHHHhcCCCCCCCcc
Confidence 23457889999999999999987665555566433
|
|
| >PRK07818 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=356.76 Aligned_cols=374 Identities=24% Similarity=0.315 Sum_probs=260.3
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCC-Cccchhc-----------------ccC------cccc
Q psy2951 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR-VKLSKQL-----------------DIK------ADSI 98 (1466)
Q Consensus 43 ~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~~-~~~~~~~-----------------~~~------~~~~ 98 (1466)
++||+||||||||++||.+|++.|.+|.|++.+.-....... +..++.+ ... ...+
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~ 83 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISGEVTFDYGAA 83 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCcCcccCHHHH
Confidence 589999999999999999999999999988743211000000 0001100 000 0000
Q ss_pred c-----------ccChhhhhcCCeEEEeCceEEEeccccccEEEecCC--cEEecCEEEEccCCCCCCCCCCCCCCcEEE
Q psy2951 99 L-----------LRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQADGVNKVFY 165 (1466)
Q Consensus 99 ~-----------~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~--~~~~~d~lviAtG~~~~~~~~~~~~~~~~~ 165 (1466)
. ......++..+++.+.+...+. +....++...++ .++.||+||||||++|+.+|..+....++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~--~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~pg~~~~~~v~- 160 (466)
T PRK07818 84 FDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFT--DANTLEVDLNDGGTETVTFDNAIIATGSSTRLLPGTSLSENVV- 160 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEc--CCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCCCCCCCCCcEE-
Confidence 0 0011223345788877765543 222223333344 36899999999999998665433222233
Q ss_pred ecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEEcCc
Q psy2951 166 LRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKA 245 (1466)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~ 245 (1466)
+..+..... ..+++++|||+|++|+|+|..++++|.+|+++++.+.+++ .+++++.+.+.+.|+++||++++++
T Consensus 161 --~~~~~~~~~---~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~-~~d~~~~~~l~~~l~~~gV~i~~~~ 234 (466)
T PRK07818 161 --TYEEQILSR---ELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALP-NEDAEVSKEIAKQYKKLGVKILTGT 234 (466)
T ss_pred --chHHHhccc---cCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCC-ccCHHHHHHHHHHHHHCCCEEEECC
Confidence 223222111 2357999999999999999999999999999999887764 5688999999999999999999999
Q ss_pred eEEEEEecCCCCeEEEEc--CCC--cEEeccEEEEeeccccCccc--cccCCceecCCccEEECCCCCcCCCCEEEeccc
Q psy2951 246 NVSSFEKNEKNDVTAANL--DNG--TTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 319 (1466)
Q Consensus 246 ~v~~i~~~~~~~~~~v~~--~~g--~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD~ 319 (1466)
+|++++.++ +.+ .+.+ .+| +++++|.||+|+|++||+++ ++..|++++++|+|.||+++||+.|+|||+|||
T Consensus 235 ~v~~i~~~~-~~~-~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~p~IyAiGD~ 312 (466)
T PRK07818 235 KVESIDDNG-SKV-TVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRTNVPHIYAIGDV 312 (466)
T ss_pred EEEEEEEeC-CeE-EEEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCcccCCCCEEEEeec
Confidence 999998643 222 2332 245 47999999999999999986 577889998889999999999999999999999
Q ss_pred ccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCCC----CCCCCC---cccccccceeeEEEEeecC------Cc---
Q psy2951 320 AYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT----SLSTIP---FFWTMLFGVGFRFAGYAAG------HT--- 383 (1466)
Q Consensus 320 ~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~----~~~~~p---~~~s~~~~~~~~~~G~~~~------~~--- 383 (1466)
+..+ ..+..|+.||+.||.||++... .+..+| |+.+... ++|.+.. .+
T Consensus 313 ~~~~-----------~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~~~~~p~~a-----~vGlte~~a~~~g~~~~~ 376 (466)
T PRK07818 313 TAKL-----------QLAHVAEAQGVVAAETIAGAETLELGDYRMMPRATFCQPQVA-----SFGLTEEQAREEGYDVKV 376 (466)
T ss_pred CCCc-----------ccHhHHHHHHHHHHHHHcCCCCCccCccCCCCeEEECCCCeE-----EEeCCHHHHHhCCCcEEE
Confidence 8643 3567899999999999997542 344555 3333333 3443221 00
Q ss_pred -eEEEe------cccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 384 -QVDIV------GDLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 384 -~~~~~------g~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
...+. ...+..+|.+++.+ +++|+|++++|. ++++..++ .+|+.+.+. ++|+|||++|.+
T Consensus 377 ~~~~~~~~~~~~~~~~~~g~~Klv~~~~~~~ilG~~~vg~~a~e~i~~~~-~ai~~~~t~~~l~~~~~~hPt~~e~~ 452 (466)
T PRK07818 377 AKFPFTANGKAHGLGDPTGFVKLVADAKYGELLGGHLIGPDVSELLPELT-LAQKWDLTAEELARNVHTHPTLSEAL 452 (466)
T ss_pred EEEECCccchhhhcCCCCeEEEEEEECCCCeEEEEEEECCCHHHHHHHHH-HHHHcCCCHHHHhcCccCCCchHHHH
Confidence 00000 01235789998886 489999999998 45666666 899988775 799999999988
|
|
| >PRK06115 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=354.47 Aligned_cols=377 Identities=22% Similarity=0.288 Sum_probs=262.9
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCC-CCC-CCCCCccchhc------------------cc------Cc
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE-NFL-PYDRVKLSKQL------------------DI------KA 95 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~-~~~-~~~~~~~~~~~------------------~~------~~ 95 (1466)
+++||+||||||||++||..+++.|++|.|++.... ... ....+..++.+ .. +.
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~ 81 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNL 81 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCH
Confidence 358999999999999999999999999988774221 000 00000011100 00 00
Q ss_pred ccc-----------cccChhhhhcCCeEEEeCceEEEeccccccEEEecCCc--EEecCEEEEccCCCCCCCCCCCCCCc
Q psy2951 96 DSI-----------LLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGT--SIDFTKIYLATGSSPRTISQADGVNK 162 (1466)
Q Consensus 96 ~~~-----------~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~--~~~~d~lviAtG~~~~~~~~~~~~~~ 162 (1466)
.++ ......++++.+++++.+...+. +.....+...++. ++.||+||||||++|..+|..+ .++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~--~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~ipg~~-~~~ 158 (466)
T PRK06115 82 AQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLD--GVGKVVVKAEDGSETQLEAKDIVIATGSEPTPLPGVT-IDN 158 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEc--cCCEEEEEcCCCceEEEEeCEEEEeCCCCCCCCCCCC-CCC
Confidence 000 01123345566899998876543 2223344444553 6999999999999987544332 222
Q ss_pred EEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEE
Q psy2951 163 VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFV 242 (1466)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~ 242 (1466)
...+ +..+...+. ..+++++|||+|++|+|+|..++++|.+||++++.+.+++ .+++++.+.+.+.|++.||+++
T Consensus 159 ~~~~-~~~~~~~~~---~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~-~~d~~~~~~l~~~l~~~gV~i~ 233 (466)
T PRK06115 159 QRII-DSTGALSLP---EVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICP-GTDTETAKTLQKALTKQGMKFK 233 (466)
T ss_pred CeEE-CHHHHhCCc---cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCC-CCCHHHHHHHHHHHHhcCCEEE
Confidence 2333 334443332 3468999999999999999999999999999999887764 5788999999999999999999
Q ss_pred cCceEEEEEecCCCCeEEEEc---CCCcEEeccEEEEeeccccCccc--cccCCceecCCccEEECCCCCcCCCCEEEec
Q psy2951 243 MKANVSSFEKNEKNDVTAANL---DNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGG 317 (1466)
Q Consensus 243 ~~~~v~~i~~~~~~~~~~v~~---~~g~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~~~iya~G 317 (1466)
+++++++++.++++....+.. .+++++++|.|++|+|++||+++ ++..+++++++| +.+|++++|+.|+|||+|
T Consensus 234 ~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G-~~vd~~~~Ts~~~IyA~G 312 (466)
T PRK06115 234 LGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRG-MLANDHHRTSVPGVWVIG 312 (466)
T ss_pred ECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCC-EEECCCeecCCCCEEEee
Confidence 999999998653221111221 22457999999999999999985 456678887766 678999999999999999
Q ss_pred ccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCCC--CCCCCCc---ccccccceeeEEEEeecCC-----ceE--
Q psy2951 318 DIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT--SLSTIPF---FWTMLFGVGFRFAGYAAGH-----TQV-- 385 (1466)
Q Consensus 318 D~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~--~~~~~p~---~~s~~~~~~~~~~G~~~~~-----~~~-- 385 (1466)
||++.+. .+..|..||+.+++||++... ++..+|+ +.++...+| .+... .++
T Consensus 313 D~~~~~~-----------la~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~t~p~ia~vG-----lte~~a~~~g~~~~~ 376 (466)
T PRK06115 313 DVTSGPM-----------LAHKAEDEAVACIERIAGKAGEVNYGLIPGVIYTRPEVATVG-----KTEEQLKAEGRAYKV 376 (466)
T ss_pred ecCCCcc-----------cHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEECCcccEEee-----CCHHHHHHCCCCEEE
Confidence 9997542 456899999999999997643 3455663 444444444 32210 001
Q ss_pred ---EEe------cccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 386 ---DIV------GDLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 386 ---~~~------g~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
.+. -..+..+|.+++.+ +++|+|++++|. +++++.++ .+|+.+.+. ++|+|||++|.+
T Consensus 377 ~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~-~ai~~~~t~~dl~~~~~~hPt~~e~~ 452 (466)
T PRK06115 377 GKFPFTANSRAKINHETEGFAKILADARTDEVLGVHMVGPSVSEMIGEFC-VAMEFSASAEDIALTCHPHPTRSEAL 452 (466)
T ss_pred EEEecccChhhHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHcCCCHHHHhhCccCCCChHHHH
Confidence 000 01235689998886 489999999998 45666666 999988875 799999999988
|
|
| >PRK06416 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=352.68 Aligned_cols=378 Identities=25% Similarity=0.323 Sum_probs=268.7
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCC-CCCCccchh----------------ccc-------Cccc
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP-YDRVKLSKQ----------------LDI-------KADS 97 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~-~~~~~~~~~----------------~~~-------~~~~ 97 (1466)
..+||+||||||||++||..|+++|++|.|++...-.... ...+..++. +.. ...+
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 82 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEKLGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGIDFKK 82 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccCHHH
Confidence 4689999999999999999999999999887754311100 000111111 000 1111
Q ss_pred ccc-----------cChhhhhcCCeEEEeCceEEEeccccccEEEecC-CcEEecCEEEEccCCCCCCCCCCCCCCcEEE
Q psy2951 98 ILL-----------RTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQD-GTSIDFTKIYLATGSSPRTISQADGVNKVFY 165 (1466)
Q Consensus 98 ~~~-----------~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~-~~~~~~d~lviAtG~~~~~~~~~~~~~~~~~ 165 (1466)
+.. .+...+++.+++++.++.... +....++...+ +..+.||+||||||++|..+|..+. ... .
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~--~~~~~~v~~~~~~~~~~~d~lViAtGs~p~~~pg~~~-~~~-~ 158 (462)
T PRK06416 83 VQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLV--DPNTVRVMTEDGEQTYTAKNIILATGSRPRELPGIEI-DGR-V 158 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEc--cCCEEEEecCCCcEEEEeCEEEEeCCCCCCCCCCCCC-CCC-e
Confidence 111 134456678999999986653 33334444323 3679999999999999976554331 121 1
Q ss_pred ecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEEcCc
Q psy2951 166 LRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKA 245 (1466)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~ 245 (1466)
+.+..+...+. ..+++++|||+|++|+|+|..|++.|.+||++++.+.+++ .+++++.+.+.+.++++||++++++
T Consensus 159 v~~~~~~~~~~---~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-~~~~~~~~~l~~~l~~~gV~i~~~~ 234 (462)
T PRK06416 159 IWTSDEALNLD---EVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILP-GEDKEISKLAERALKKRGIKIKTGA 234 (462)
T ss_pred EEcchHhhCcc---ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCC-cCCHHHHHHHHHHHHHcCCEEEeCC
Confidence 22445554433 2357999999999999999999999999999999887764 5789999999999999999999999
Q ss_pred eEEEEEecCCCCeEEEEcCCC---cEEeccEEEEeeccccCcccc--ccCCceecCCccEEECCCCCcCCCCEEEecccc
Q psy2951 246 NVSSFEKNEKNDVTAANLDNG---TTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA 320 (1466)
Q Consensus 246 ~v~~i~~~~~~~~~~v~~~~g---~~i~~D~Vi~a~G~~p~~~~l--~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD~~ 320 (1466)
+|++++.+++ .+ .+.+.++ +++++|.||+|+|++|+++++ +..+++++ +|++.||+++||+.|+|||+|||+
T Consensus 235 ~V~~i~~~~~-~v-~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~-~g~i~vd~~~~t~~~~VyAiGD~~ 311 (462)
T PRK06416 235 KAKKVEQTDD-GV-TVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTD-RGFIEVDEQLRTNVPNIYAIGDIV 311 (462)
T ss_pred EEEEEEEeCC-EE-EEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeec-CCEEeECCCCccCCCCEEEeeecC
Confidence 9999986542 22 3444444 679999999999999999875 57788888 799999999999999999999998
Q ss_pred cccCccCCCCcceeccHHHHHHHHHHHHHHhcCCCCCC--CCCCcccccccceeeEEEEeecCC-----ceEE-----Ee
Q psy2951 321 YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSL--STIPFFWTMLFGVGFRFAGYAAGH-----TQVD-----IV 388 (1466)
Q Consensus 321 ~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~--~~~p~~~s~~~~~~~~~~G~~~~~-----~~~~-----~~ 388 (1466)
..+ ..+..|..||+.+|.||++....+ ..+|+ ....+..+..+|.+... .++. +.
T Consensus 312 ~~~-----------~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~~--~~~~~~~~a~vG~te~~a~~~g~~~~~~~~~~~ 378 (462)
T PRK06416 312 GGP-----------MLAHKASAEGIIAAEAIAGNPHPIDYRGIPA--VTYTHPEVASVGLTEAKAKEEGFDVKVVKFPFA 378 (462)
T ss_pred CCc-----------chHHHHHHHHHHHHHHHcCCCCCCCCCCCCe--EEECCCceEEEeCCHHHHHhcCCCeEEEEEecC
Confidence 643 356789999999999999865433 33342 22233344555544311 1110 00
Q ss_pred c------ccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 389 G------DLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 389 g------~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
. ..+..+|.+++.+ +++|+|++++|. +++++.++ .+|+.+.+. +++.|||++|.+
T Consensus 379 ~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~-~ai~~~~t~~~l~~~~~~hPt~~e~~ 448 (462)
T PRK06416 379 GNGKALALGETDGFVKLIFDKKDGEVLGAHMVGARASELIQEAQ-LAINWEATPEDLALTIHPHPTLSEAL 448 (462)
T ss_pred cChHhHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhhCccCCCCHHHHH
Confidence 0 1135688888875 589999999998 45666666 899988876 789999999988
|
|
| >PRK07845 flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=353.12 Aligned_cols=376 Identities=21% Similarity=0.284 Sum_probs=269.9
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCC-CCCCccchhc----------------ccC----------c
Q psy2951 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP-YDRVKLSKQL----------------DIK----------A 95 (1466)
Q Consensus 43 ~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~-~~~~~~~~~~----------------~~~----------~ 95 (1466)
++||+||||||||++||..++++|.++.+++...-.... ...+..++.+ ... .
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 80 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVDL 80 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccCH
Confidence 358999999999999999999999998888754311100 0011111110 000 0
Q ss_pred cc-----------ccccChhhhhcCCeEEEeCceEEEe--ccccccEEEecCCc--EEecCEEEEccCCCCCCCCCC-CC
Q psy2951 96 DS-----------ILLRTEEFYKDNDIHVIKGKKIISD--SELNEKKIKLQDGT--SIDFTKIYLATGSSPRTISQA-DG 159 (1466)
Q Consensus 96 ~~-----------~~~~~~~~~~~~~v~~~~~~~v~~~--~~~~~~~v~~~~~~--~~~~d~lviAtG~~~~~~~~~-~~ 159 (1466)
.. +...+.+.+++.+++++.++..... .+....++...++. ++.||+||||||++|+.+|.. ++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~~p~~~~~ 160 (466)
T PRK07845 81 PAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILPTAEPD 160 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCCCCCCCCC
Confidence 00 1123345567789999999877633 23333445555665 799999999999999866532 22
Q ss_pred CCcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCc
Q psy2951 160 VNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGV 239 (1466)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV 239 (1466)
.+.++..+. ...+. ..+++++|||+|++|+|+|..|++.|.+||++++.+.+++ .+++++.+.+.+.|+++||
T Consensus 161 ~~~v~~~~~---~~~~~---~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~-~~d~~~~~~l~~~L~~~gV 233 (466)
T PRK07845 161 GERILTWRQ---LYDLD---ELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLP-GEDADAAEVLEEVFARRGM 233 (466)
T ss_pred CceEEeehh---hhccc---ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCC-CCCHHHHHHHHHHHHHCCc
Confidence 233444332 22222 1247999999999999999999999999999999887764 4688999999999999999
Q ss_pred EEEcCceEEEEEecCCCCeEEEEcCCCcEEeccEEEEeeccccCccc--cccCCceecCCccEEECCCCCcCCCCEEEec
Q psy2951 240 KFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGG 317 (1466)
Q Consensus 240 ~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~~~iya~G 317 (1466)
++++++++.+++.++ +.+ .+.+.+|+++++|.|++++|++||+++ ++..+++++++|+|.||++++|+.|||||+|
T Consensus 234 ~i~~~~~v~~v~~~~-~~~-~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~Ts~~~IyA~G 311 (466)
T PRK07845 234 TVLKRSRAESVERTG-DGV-VVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRTSVPGIYAAG 311 (466)
T ss_pred EEEcCCEEEEEEEeC-CEE-EEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCcccCCCCEEEEe
Confidence 999999999997643 223 355667889999999999999999986 5778899998899999999999999999999
Q ss_pred ccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCCC---CCCCCCc---ccccccceeeEEEEeecC------Cc--
Q psy2951 318 DIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT---SLSTIPF---FWTMLFGVGFRFAGYAAG------HT-- 383 (1466)
Q Consensus 318 D~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~---~~~~~p~---~~s~~~~~~~~~~G~~~~------~~-- 383 (1466)
||+..+ ..+..|..||+.++.|+++... .+..+|+ ..+....+| .... .+
T Consensus 312 D~~~~~-----------~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~vf~~p~~a~vG-----lte~~a~~~g~~~~ 375 (466)
T PRK07845 312 DCTGVL-----------PLASVAAMQGRIAMYHALGEAVSPLRLKTVASNVFTRPEIATVG-----VSQAAIDSGEVPAR 375 (466)
T ss_pred eccCCc-----------cchhHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEeCCCcceeec-----CCHHHHHhCCCceE
Confidence 998753 3456899999999999997542 3345553 223333333 3220 00
Q ss_pred --eEEEec------ccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 384 --QVDIVG------DLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 384 --~~~~~g------~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
...+.. .-+..+|.+++.+ +++|+|++++|. +++++.++ .+|+.+.+. +++.|||++|.+
T Consensus 376 ~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~-~ai~~~~t~~~l~~~~~~hPt~~e~~ 452 (466)
T PRK07845 376 TVMLPLATNPRAKMSGLRDGFVKLFCRPGTGVVIGGVVVAPRASELILPIA-LAVQNRLTVDDLAQTFTVYPSLSGSI 452 (466)
T ss_pred EEEEecccCchhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHcCCCHHHHhcCcCCCCCHHHHH
Confidence 001110 1135689998886 489999999998 45666666 899988775 799999999987
|
|
| >COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=336.31 Aligned_cols=308 Identities=22% Similarity=0.346 Sum_probs=256.9
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhc--cCcccccccChhhhccCC-cEEEcCCeE
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD--IKADSILLRTEEFYKDND-IHVIKGKKI 1142 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~-v~~~~~~~v 1142 (1466)
+++|||||||++|+.+|..|.+...+.+|||||+.++++|. |.|..... .+.+.+..+..+.+...+ ++++.++ |
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~-plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~~-V 80 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFT-PLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQGE-V 80 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccc-hhhhhhhcCCCChhheeccHHHHhcccCceEEEEEE-E
Confidence 57899999999999999999987413599999999998875 44444443 456666677777777555 9999998 9
Q ss_pred EEeecCCCCeEEecCCcEEecCeEEEecCCCCCcCCCCCCCC-cEEEecCHHHHHhhhcccC--------CC-----CeE
Q psy2951 1143 ISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-KVFYLRTVEDANNIAPHIT--------PE-----SNV 1208 (1466)
Q Consensus 1143 ~~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~-~v~~~~~~~~~~~l~~~~~--------~~-----~~v 1208 (1466)
++| |+++++|.++++.+++||+||+|+|+++..+.+| |.. ..+.+++++||.++++.+. .. .++
T Consensus 81 ~~I-D~~~k~V~~~~~~~i~YD~LVvalGs~~~~fgi~-G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti 158 (405)
T COG1252 81 TDI-DRDAKKVTLADLGEISYDYLVVALGSETNYFGIP-GAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTI 158 (405)
T ss_pred EEE-cccCCEEEeCCCccccccEEEEecCCcCCcCCCC-CHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEE
Confidence 999 9999999999988999999999999999999999 866 7888999999999887653 11 269
Q ss_pred EEEcCCHHHHHHHHHHhcCC-------------CeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEe
Q psy2951 1209 VVIGSSFIGMEAAAFCASKV-------------KSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEK 1275 (1466)
Q Consensus 1209 vVvG~g~~g~e~a~~l~~~g-------------~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~ 1275 (1466)
+|+|+|++|.|+|..|+++- .+|+++++.++.++ .+++++++...+.|+++||++++++.|++++
T Consensus 159 ~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp-~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~- 236 (405)
T COG1252 159 VIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILP-MFPPKLSKYAERALEKLGVEVLLGTPVTEVT- 236 (405)
T ss_pred EEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhcc-CCCHHHHHHHHHHHHHCCCEEEcCCceEEEC-
Confidence 99999999999999876651 38999999999997 7899999999999999999999999999998
Q ss_pred cCCCcEEEEEcCCCCe-eecCEEEEeeccccCcccccc-CCceeeCCCeEEeCCCcccc-CCCEEEecccccCCCccCCC
Q psy2951 1276 NEKNDVTAANLDNGTT-IPADLVIVGIGTVLNTNYLDG-KGVELNGQKAVVVNEYLETN-VPGVYAGGDIAYAPLHSFYN 1352 (1466)
Q Consensus 1276 ~~~g~~~~v~l~~g~~-i~~D~vv~a~G~~p~~~~~~~-~gl~~~~~G~i~vd~~~~t~-~~~v~a~GD~a~~p~~~~~~ 1352 (1466)
.+ .|.+++|.+ |++|.+|+++|.+++ +++++ .|++.|.+|.++||+++++. +|+|||+||||..+..
T Consensus 237 -~~----~v~~~~g~~~I~~~tvvWaaGv~a~-~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~---- 306 (405)
T COG1252 237 -PD----GVTLKDGEEEIPADTVVWAAGVRAS-PLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDP---- 306 (405)
T ss_pred -CC----cEEEccCCeeEecCEEEEcCCCcCC-hhhhhcChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCC----
Confidence 33 288888884 999999999999998 67777 58888888999999999986 9999999999988763
Q ss_pred ceeeeecHHHHHHHHHHHHHHhcCCCCCCCCCccceec
Q psy2951 1353 KNASIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTM 1390 (1466)
Q Consensus 1353 ~~~~~~~~~~A~~qa~~aa~~i~g~~~~~~~~p~~w~~ 1390 (1466)
......-+.|.+||+.+|+||..........||-+.+
T Consensus 307 -~p~P~tAQ~A~Qqg~~~a~ni~~~l~g~~l~~f~y~~ 343 (405)
T COG1252 307 -RPVPPTAQAAHQQGEYAAKNIKARLKGKPLKPFKYKD 343 (405)
T ss_pred -CCCCChhHHHHHHHHHHHHHHHHHhcCCCCCCCcccc
Confidence 0112234899999999999999755444455554543
|
|
| >TIGR03385 CoA_CoA_reduc CoA-disulfide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=348.48 Aligned_cols=375 Identities=21% Similarity=0.294 Sum_probs=294.1
Q ss_pred HHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhcc--C-ccccccc-ChhhhccCCcEEEcCCeEEEeecCCCCeEEe
Q psy2951 1080 TCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDI--K-ADSILLR-TEEFYKDNDIHVIKGKKIISDSELNEKKIKL 1155 (1466)
Q Consensus 1080 ~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~~--~-~~~~~~~-~~~~~~~~~v~~~~~~~v~~i~d~~~~~v~~ 1155 (1466)
+||..|++.+.+.+|||||+++++.|.+..++..... . .+..... ..+++.+++++++.+++|+.+ |+..++|.+
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~i-d~~~~~v~~ 79 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVSFANCGLPYVIGGVIDDRNKLLAYTPEVFIKKRGIDVKTNHEVIEV-NDERQTVVV 79 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCceeEEcCCCCeEeccccCCHHHcccCCHHHHHHhcCCeEEecCEEEEE-ECCCCEEEE
Confidence 4789999887667999999999887765444433221 1 1222222 234558889999999999999 999998888
Q ss_pred cC---CcEEe--cCeEEEecCCCCCcCCCCCCCC--cEEEecCHHHHHhhhccc--CCCCeEEEEcCCHHHHHHHHHHhc
Q psy2951 1156 QD---GTSID--FTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHI--TPESNVVVIGSSFIGMEAAAFCAS 1226 (1466)
Q Consensus 1156 ~~---g~~~~--yd~lvlAtG~~~~~~~~~~g~~--~v~~~~~~~~~~~l~~~~--~~~~~vvVvG~g~~g~e~a~~l~~ 1226 (1466)
.+ +..+. ||+||||||++|+.+++| |++ +++..+++.++.++++.+ ..+++|+|||+|++|+|+|..|++
T Consensus 80 ~~~~~~~~~~~~yd~lIiATG~~p~~~~i~-G~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~ 158 (427)
T TIGR03385 80 RNNKTNETYEESYDYLILSPGASPIVPNIE-GINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRE 158 (427)
T ss_pred EECCCCCEEecCCCEEEECCCCCCCCCCCC-CcCCCCEEEECCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHh
Confidence 63 45677 999999999999999999 875 788899999998887776 357899999999999999999999
Q ss_pred CCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccC
Q psy2951 1227 KVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLN 1306 (1466)
Q Consensus 1227 ~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~ 1306 (1466)
.|.+|+++++.+.++.+.+++++.+.+.+.++++||++++++.+++++ . ++.+ +.+.+|+++++|.|++++|..|+
T Consensus 159 ~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~-~-~~~~--v~~~~g~~i~~D~vi~a~G~~p~ 234 (427)
T TIGR03385 159 RGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIE-G-EERV--KVFTSGGVYQADMVILATGIKPN 234 (427)
T ss_pred CCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEe-c-CCCE--EEEcCCCEEEeCEEEECCCccCC
Confidence 999999999998776557788899999999999999999999999998 3 3333 56778999999999999999999
Q ss_pred ccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCCCCCCCCC-c
Q psy2951 1307 TNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSLSTI-P 1385 (1466)
Q Consensus 1307 ~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~~~~~~~-p 1385 (1466)
+++++.+|+.++.+|+|.||++++|+.|+|||+|||+..+... .+.+.....|+.|..||++||+||+|...++... +
T Consensus 235 ~~~l~~~gl~~~~~G~i~vd~~~~t~~~~Vya~GD~~~~~~~~-~~~~~~~~~~~~A~~~g~~~a~ni~g~~~~~~~~~~ 313 (427)
T TIGR03385 235 SELAKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAESHNII-TKKPAWVPLAWGANKMGRIAGENIAGNDIEFKGVLG 313 (427)
T ss_pred HHHHHhcCcccCCCCCEEECCCcEeCCCCEEEeeeeEEeeecc-CCCceeeechHHHHHHHHHHHHHhcCCCCCCCCcce
Confidence 9999999999988899999999999999999999999887654 3555566789999999999999999976666543 3
Q ss_pred cceeccccccEEEEeeCC------CCceE--EEcCC-------cCCceEEEEEEe--CCEEEEEEEecCc---HHHHHHH
Q psy2951 1386 FFWTMLFGVGFRFAGYAA------GHTQV--DIVGD-------LEALKFTAYYSN--ADKVLAILTVGMD---PLAAQFA 1445 (1466)
Q Consensus 1386 ~~w~~~~~~~~~~~g~~~------~~~~~--~~~~~-------~~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~ 1445 (1466)
..++..++..+..+|+.+ +.+-. ...-. -.+..|++++++ +++++|+..+|.. ..+..+.
T Consensus 314 ~~~~~~~~~~~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~~a~e~i~~~~ 393 (427)
T TIGR03385 314 TNITKFFDLTIASTGVTENEAKKLNIDYKTVFVKAKTHANYYPGNSPLHLKLIYEKDTRRILGAQAVGKEGADKRIDVLA 393 (427)
T ss_pred eeEEEEcCeEEEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEEEEEEECCCCeEEEEEEEccccHHHHHHHHH
Confidence 446778899999999853 22211 11100 012347777774 6999999999986 2233455
Q ss_pred HHHHcCCCCChhcccccC
Q psy2951 1446 ERIKMQKYIQKDQIENNA 1463 (1466)
Q Consensus 1446 ~~~~~~~~~~~~~~~~~~ 1463 (1466)
-+|+.+ ++.++|++..
T Consensus 394 ~ai~~~--~t~~~l~~~~ 409 (427)
T TIGR03385 394 AAIMAG--LTVKDLFFFE 409 (427)
T ss_pred HHHHCC--CCHHHHhhcc
Confidence 567766 5555554433
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. |
| >PRK14694 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=350.61 Aligned_cols=380 Identities=22% Similarity=0.298 Sum_probs=267.9
Q ss_pred CCCCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCC-CCccchh-------------------c-----c
Q psy2951 38 LSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD-RVKLSKQ-------------------L-----D 92 (1466)
Q Consensus 38 ~~~~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~-~~~~~~~-------------------~-----~ 92 (1466)
|+...++||+||||||||++||..|++.|+++.|++...-...-.. .+..++. + .
T Consensus 1 ~~~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~ 80 (468)
T PRK14694 1 MMSDNNLHIAVIGSGGSAMAAALKATERGARVTLIERGTIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPV 80 (468)
T ss_pred CCCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCc
Confidence 4566789999999999999999999999999888775421000000 0000000 0 0
Q ss_pred cCccccc-------cc-----Chhhhhc-CCeEEEeCceEEEeccccccEEEecCCc--EEecCEEEEccCCCCCCCCCC
Q psy2951 93 IKADSIL-------LR-----TEEFYKD-NDIHVIKGKKIISDSELNEKKIKLQDGT--SIDFTKIYLATGSSPRTISQA 157 (1466)
Q Consensus 93 ~~~~~~~-------~~-----~~~~~~~-~~v~~~~~~~v~~~~~~~~~~v~~~~~~--~~~~d~lviAtG~~~~~~~~~ 157 (1466)
.+...+. .+ ....+++ .+++++.++.... +...++|++.++. +++||+||||||++|+.++ +
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~i--d~~~~~V~~~~g~~~~~~~d~lViATGs~p~~p~-i 157 (468)
T PRK14694 81 VDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFV--DERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPP-V 157 (468)
T ss_pred cCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEe--cCCEEEEEecCCCeEEEECCEEEEeCCCCCCCCC-C
Confidence 0011111 11 1222333 3899999876544 5566788877763 7999999999999998654 5
Q ss_pred CCCCcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhC
Q psy2951 158 DGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESK 237 (1466)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~ 237 (1466)
++.+...++ +..+...+. ..+++++|||+|++|+|+|..|+++|.+|+++++. .++ +.+++++.+.+.+.|+++
T Consensus 158 ~G~~~~~~~-~~~~~~~l~---~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~-~~l-~~~~~~~~~~l~~~l~~~ 231 (468)
T PRK14694 158 PGLAETPYL-TSTSALELD---HIPERLLVIGASVVALELAQAFARLGSRVTVLARS-RVL-SQEDPAVGEAIEAAFRRE 231 (468)
T ss_pred CCCCCCceE-cchhhhchh---cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEECC-CCC-CCCCHHHHHHHHHHHHhC
Confidence 554432222 223343332 23579999999999999999999999999999874 343 457889999999999999
Q ss_pred CcEEEcCceEEEEEecCCCCeEEEEcCCCcEEeccEEEEeeccccCcccc--ccCCceecCCccEEECCCCCcCCCCEEE
Q psy2951 238 GVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYA 315 (1466)
Q Consensus 238 GV~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~l--~~~gl~~~~~g~i~vd~~~~t~~~~iya 315 (1466)
||++++++.+++++.++ + ...+.+++ .++++|.||+|+|++||++++ +..+++. ++|+|.||++++|+.|+|||
T Consensus 232 GI~v~~~~~v~~i~~~~-~-~~~v~~~~-~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~-~~G~i~vd~~~~Ts~~~IyA 307 (468)
T PRK14694 232 GIEVLKQTQASEVDYNG-R-EFILETNA-GTLRAEQLLVATGRTPNTENLNLESIGVET-ERGAIRIDEHLQTTVSGIYA 307 (468)
T ss_pred CCEEEeCCEEEEEEEcC-C-EEEEEECC-CEEEeCEEEEccCCCCCcCCCCchhcCccc-CCCeEeeCCCcccCCCCEEE
Confidence 99999999999997653 2 22344444 479999999999999999875 5567775 46899999999999999999
Q ss_pred ecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCCCC--CCCCCcccccccceeeEEEEeecC------Cc----
Q psy2951 316 GGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS--LSTIPFFWTMLFGVGFRFAGYAAG------HT---- 383 (1466)
Q Consensus 316 ~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~--~~~~p~~~s~~~~~~~~~~G~~~~------~~---- 383 (1466)
+|||+..+. .+..|..||+.||.||++.... +..+|.. ...+..+.++|.+.. .+
T Consensus 308 ~GD~~~~~~-----------~~~~A~~~G~~aa~~i~~~~~~~~~~~~p~~--~~~~p~~a~vGlte~~a~~~g~~~~~~ 374 (468)
T PRK14694 308 AGDCTDQPQ-----------FVYVAAAGGSRAAINMTGGDASLDLSAMPEV--IFTDPQVATVGLSEAEAQAQGYDTDSR 374 (468)
T ss_pred EeecCCCcc-----------cHHHHHHHHHHHHHHhcCCCcccccCCCCeE--EECCCCeEEeeCCHHHHHHcCCceEEE
Confidence 999987543 3567999999999999876433 3344422 222333445554331 11
Q ss_pred eEEEe--c----ccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 384 QVDIV--G----DLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 384 ~~~~~--g----~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
...+. + ..+..+|.+++.+ +++|+|++++|. +++++.++ .+|+.+.+. ++++|||++|.+
T Consensus 375 ~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~-~ai~~~~t~~~l~~~~~~hPt~~e~~ 449 (468)
T PRK14694 375 TLDLENVPRALVNFDTGGFIKMVAERGSGRLLGVQVVAGEAGELIQTAV-MALRARMTVNEIADELFPYLTMVEGL 449 (468)
T ss_pred EEecccchhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhccccCCCchHHHH
Confidence 01111 1 1135789998886 489999999997 56776666 999999876 899999999988
|
|
| >PLN02507 glutathione reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=349.74 Aligned_cols=348 Identities=20% Similarity=0.287 Sum_probs=260.0
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCC---------CCCCCCC----Cccchhc----------------
Q psy2951 593 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE---------NFLPYDR----VKLSKQL---------------- 643 (1466)
Q Consensus 593 ~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~---------~~~~~~~----~~~~~~~---------------- 643 (1466)
...+||+||||||||+.||..++++|.+ |.++|+. ..+++.- +-.++.+
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~--V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~ 100 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAK--VGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNY 100 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCe--EEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhc
Confidence 4468999999999999999999999998 6777741 1122110 0011110
Q ss_pred c--------cCccccccc-----------CHhHhhhCCcEEEEceEEEEeccccccEEEccCCC--EEecCEEEEcCCCC
Q psy2951 644 D--------IKADSILLR-----------TEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGT--SIDFTKIYLATGSS 702 (1466)
Q Consensus 644 ~--------~~~~~~~~~-----------~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~--~~~~d~lviAtG~~ 702 (1466)
+ .+...+..+ +...+.+.+|+++.++ +..+ +.....+.+.+|+ ++.||+||||||++
T Consensus 101 G~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~-a~~v-d~~~v~V~~~~g~~~~~~~d~LIIATGs~ 178 (499)
T PLN02507 101 GWEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGE-GKIV-GPNEVEVTQLDGTKLRYTAKHILIATGSR 178 (499)
T ss_pred CcccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEE-EEEe-cCCEEEEEeCCCcEEEEEcCEEEEecCCC
Confidence 0 011111111 1233455799999997 7778 8877888877775 58899999999999
Q ss_pred CCcCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHH
Q psy2951 703 PRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERI 782 (1466)
Q Consensus 703 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~ 782 (1466)
|..|++| |.+.. .+.+++..+.. .+++++|||+|++|+|+|..|++.|.+|+|+++.++++ +.+++++.+.+
T Consensus 179 p~~p~ip-G~~~~---~~~~~~~~l~~---~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l-~~~d~~~~~~l 250 (499)
T PLN02507 179 AQRPNIP-GKELA---ITSDEALSLEE---LPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL-RGFDDEMRAVV 250 (499)
T ss_pred CCCCCCC-Cccce---echHHhhhhhh---cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC-cccCHHHHHHH
Confidence 9999999 86532 24455544432 37899999999999999999999999999999998776 45899999999
Q ss_pred HHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCccc--cccCCceeeCCCcEEeCCCCCC
Q psy2951 783 TKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLET 860 (1466)
Q Consensus 783 ~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t 860 (1466)
.+.|+++||++++++++++++.. ++. ..+.+.+|+++++|.|++++|++|++++ ++..|++++++|+|.||+++||
T Consensus 251 ~~~l~~~GI~i~~~~~V~~i~~~-~~~-~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~~T 328 (499)
T PLN02507 251 ARNLEGRGINLHPRTNLTQLTKT-EGG-IKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYSRT 328 (499)
T ss_pred HHHHHhCCCEEEeCCEEEEEEEe-CCe-EEEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCCcC
Confidence 99999999999999999999843 223 3466778889999999999999999986 5788999999999999999999
Q ss_pred CCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCCc---CcccCeeeeeecCc-eeEEeeccCC---
Q psy2951 861 NVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS---LSTIPFFWTMLFGV-GFRFAGYAAG--- 933 (1466)
Q Consensus 861 ~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~~---~~~~~~~~~~~~~~-~~~~~g~~~~--- 933 (1466)
+.|+|||+|||+..+. .++.|.+||+++|+||++.... +..+| ..+|.. .+..+|+++.
T Consensus 329 s~p~IyAiGDv~~~~~-----------l~~~A~~qg~~aa~ni~g~~~~~~~~~~~p---~~if~~p~ia~vGlte~ea~ 394 (499)
T PLN02507 329 NIPSIWAIGDVTNRIN-----------LTPVALMEGTCFAKTVFGGQPTKPDYENVA---CAVFCIPPLSVVGLSEEEAV 394 (499)
T ss_pred CCCCEEEeeEcCCCCc-----------cHHHHHHHHHHHHHHHcCCCCCcCCCCCCC---eEEECCCccEEEeCCHHHHH
Confidence 9999999999987543 3478999999999999975432 33444 334554 5777887642
Q ss_pred ---CCceeEe--c---------ccccceEEEEEe--cCCeEEEEEeecCch
Q psy2951 934 ---HTQVDIV--G---------DLEALKFTAYYS--NADKVLAILTVGMDP 968 (1466)
Q Consensus 934 ---~~~~~~~--~---------~~~~~~~~~~~~--~~~~i~g~~~~g~~~ 968 (1466)
..+.... . ...+..|.|+++ ++++++|++++|.+.
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~ilG~~~vg~~a 445 (499)
T PLN02507 395 EQAKGDILVFTSSFNPMKNTISGRQEKTVMKLIVDAETDKVLGASMCGPDA 445 (499)
T ss_pred hccCCCEEEEEeecCccccccccCCCCEEEEEEEECCCCEEEEEEEECCCH
Confidence 1111100 0 012356889888 478999999999763
|
|
| >PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=347.36 Aligned_cols=373 Identities=18% Similarity=0.279 Sum_probs=263.3
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCC--CCC-Cccchhcc------cCcc-------cccccC---
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP--YDR-VKLSKQLD------IKAD-------SILLRT--- 102 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~--~~~-~~~~~~~~------~~~~-------~~~~~~--- 102 (1466)
+++||+||||||||++||..|+++|+++.|++..+..... ... +..++.+. .... .+..++
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRNK 81 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence 3689999999999999999999999998886654321100 000 01111110 0000 000111
Q ss_pred --hhhhhcCCeEEEeCceEEEeccccccEEEecCCc-EEecCEEEEccCCCCCCCCCCCCCC---cEEEecCHHHHHhhc
Q psy2951 103 --EEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGT-SIDFTKIYLATGSSPRTISQADGVN---KVFYLRTVEDANNIA 176 (1466)
Q Consensus 103 --~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~-~~~~d~lviAtG~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 176 (1466)
.++.+..+++++.++.... +....++...++. ++.||+||||||++|..++ +++.+ .++ +..+...+.
T Consensus 82 ~~~~~~~~~gv~~~~g~~~~i--~~~~~~v~~~~g~~~~~~d~lviATGs~p~~p~-i~G~~~~~~v~---~~~~~~~~~ 155 (441)
T PRK08010 82 NFHNLADMPNIDVIDGQAEFI--NNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPP-IPGITTTPGVY---DSTGLLNLK 155 (441)
T ss_pred HHHHHhhcCCcEEEEEEEEEe--cCCEEEEEeCCCeEEEEeCEEEEcCCCcCCCCC-CCCccCCCCEE---ChhHhhccc
Confidence 1222334899998876543 3445556666664 6999999999999997554 55532 233 223333222
Q ss_pred ccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCC
Q psy2951 177 PHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKN 256 (1466)
Q Consensus 177 ~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~ 256 (1466)
..+++++|||+|++|+|+|..+++.|.+|+++++.+.++ +.+++++.+.+.+.|+++||++++++.+++++.++ +
T Consensus 156 ---~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-~~~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~-~ 230 (441)
T PRK08010 156 ---ELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL-PREDRDIADNIATILRDQGVDIILNAHVERISHHE-N 230 (441)
T ss_pred ---ccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC-CCcCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-C
Confidence 345799999999999999999999999999999987665 45688999999999999999999999999998653 2
Q ss_pred CeEEEEcCCCcEEeccEEEEeeccccCccc--cccCCceecCCccEEECCCCCcCCCCEEEecccccccCccCCCCccee
Q psy2951 257 DVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASI 334 (1466)
Q Consensus 257 ~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~g~~~~~ 334 (1466)
.+ .+.++++ ++++|.|++|+|++||+++ ++..|++++++|+|.||+++||+.|||||+|||++.+.
T Consensus 231 ~v-~v~~~~g-~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~---------- 298 (441)
T PRK08010 231 QV-QVHSEHA-QLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHTTADNIWAMGDVTGGLQ---------- 298 (441)
T ss_pred EE-EEEEcCC-eEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCcc----------
Confidence 22 3444444 5899999999999999986 45778899888999999999999999999999997653
Q ss_pred ccHHHHHHHHHHHHHHhcCC-CC---CCCCCC---cccccccceeeEEEEeecC------Cc----eEEEe------ccc
Q psy2951 335 GHYQLAQYHGRIAALNMVEK-KT---SLSTIP---FFWTMLFGVGFRFAGYAAG------HT----QVDIV------GDL 391 (1466)
Q Consensus 335 ~~~~~A~~~g~~aa~~i~~~-~~---~~~~~p---~~~s~~~~~~~~~~G~~~~------~~----~~~~~------g~~ 391 (1466)
....|..+|+.++.|+++. .. .+..+| |+.+....+| .+.. .+ ...+. -..
T Consensus 299 -~~~~a~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~p~ia~vG-----lte~~a~~~g~~~~~~~~~~~~~~~~~~~~ 372 (441)
T PRK08010 299 -FTYISLDDYRIVRDELLGEGKRSTDDRKNVPYSVFMTPPLSRVG-----MTEEQARESGADIQVVTLPVAAIPRARVMN 372 (441)
T ss_pred -chhHHHHHHHHHHHHHcCCCCcccCccCCCCEEEECCCCceeee-----CCHHHHHHcCCCeEEEEEecCcChhhhhcC
Confidence 3446889999999999974 21 334555 3344444444 3221 00 00000 012
Q ss_pred CCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 392 EALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 392 ~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
+..+|.+++.+ +++|+|++++|. +++++.++ .+|+++.+. .++.|||++|.+
T Consensus 373 ~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~-~ai~~~~t~~~l~~~~~~hPt~~e~~ 433 (441)
T PRK08010 373 DTRGVLKAIVDNKTQRILGASLLCVDSHEMINIVK-MVMDAGLPYSILRDQIFTHPSMSESL 433 (441)
T ss_pred CCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhhccccCCchHHHH
Confidence 35678888886 589999999998 45666666 999998876 799999999987
|
|
| >TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=349.22 Aligned_cols=343 Identities=20% Similarity=0.283 Sum_probs=254.0
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCC----Cccch----------------hcc--------cC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR----VKLSK----------------QLD--------IK 646 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~----~~~~~----------------~~~--------~~ 646 (1466)
.+||+||||||||++||..|+++|++ |+++|++. +++.. +-.++ .++ .+
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~--V~liE~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 78 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAK--ALLVEAKK-LGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFN 78 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCc--EEEecccc-cccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccC
Confidence 58999999999999999999999998 77888753 22110 00010 000 01
Q ss_pred cccc-----------cccCHhHhhhCCcEEEEceEEEEeccccccEEEccCCCEEecCEEEEcCCCCCCcC-CCCCCCCc
Q psy2951 647 ADSI-----------LLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTI-SQADGVNK 714 (1466)
Q Consensus 647 ~~~~-----------~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~-~~~~g~~~ 714 (1466)
...+ ...+...+++.||+++.++.+ .. + .+++.+ ++..+.||+||||||++|+.| ++| |.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~-~~-~--~~~v~v-~~~~~~~d~vIiAtGs~p~~p~~i~-g~~~ 152 (450)
T TIGR01421 79 WPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHAR-FT-K--DGTVEV-NGRDYTAPHILIATGGKPSFPENIP-GAEL 152 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-Ec-c--CCEEEE-CCEEEEeCEEEEecCCCCCCCCCCC-CCce
Confidence 1111 111334466679999999843 33 3 345555 466899999999999999999 888 7652
Q ss_pred EEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEE
Q psy2951 715 VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFV 794 (1466)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~ 794 (1466)
. .+.++...+. ..+++++|||+|++|+|+|..|++.|.+||++++.++++ +.+++++.+.+.+.|+++||+++
T Consensus 153 ~---~~~~~~~~~~---~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il-~~~d~~~~~~~~~~l~~~gI~i~ 225 (450)
T TIGR01421 153 G---TDSDGFFALE---ELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL-RSFDSMISETITEEYEKEGINVH 225 (450)
T ss_pred e---EcHHHhhCcc---ccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-cccCHHHHHHHHHHHHHcCCEEE
Confidence 2 2333433222 247999999999999999999999999999999998877 67899999999999999999999
Q ss_pred ccceEEEEEecCCCceEEEECCCC-cEEecCEEEEccccccCccc--cccCCceeeCCCcEEeCCCCCCCCCCeEEeccc
Q psy2951 795 MKANVSSFEKNEKNDVTAANLDNG-TTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 871 (1466)
Q Consensus 795 ~~~~v~~i~~~~~~~~~~v~~~~g-~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~ 871 (1466)
+++.+++++...++ ...+.++++ +.+++|.|++++|++|++++ ++..+++++++|++.||+++||+.|+|||+|||
T Consensus 226 ~~~~v~~i~~~~~~-~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T~~p~IyAiGD~ 304 (450)
T TIGR01421 226 KLSKPVKVEKTVEG-KLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNTNVPGIYALGDV 304 (450)
T ss_pred cCCEEEEEEEeCCc-eEEEEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCCcCCCCCEEEEEec
Confidence 99999999843332 235666777 57999999999999999985 578899999999999999999999999999999
Q ss_pred cccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCC----cCcccCeeeeeecCceeEEeeccCCC-------Ccee--
Q psy2951 872 AYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT----SLSTIPFFWTMLFGVGFRFAGYAAGH-------TQVD-- 938 (1466)
Q Consensus 872 ~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~-- 938 (1466)
+..+. .++.|.+||+.+|+||++... .+..+|.. .++.+.+..+|+++.. ....
T Consensus 305 ~~~~~-----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~--~f~~p~ia~vGlte~~a~~~~g~~~~~~~ 371 (450)
T TIGR01421 305 VGKVE-----------LTPVAIAAGRKLSERLFNGKTDDKLDYNNVPTV--VFSHPPIGTIGLTEKEAIEKYGKENIKVY 371 (450)
T ss_pred CCCcc-----------cHHHHHHHHHHHHHHHhcCCCCCccCcccCCeE--EeCCCceEEEeCCHHHHHhhcCCCCEEEE
Confidence 97554 347899999999999996432 24456532 2344567788876521 1111
Q ss_pred Eec---------ccccceEEEEEe--cCCeEEEEEeecCc
Q psy2951 939 IVG---------DLEALKFTAYYS--NADKVLAILTVGMD 967 (1466)
Q Consensus 939 ~~~---------~~~~~~~~~~~~--~~~~i~g~~~~g~~ 967 (1466)
... .-.+..|+|+++ ++++++|+++++.+
T Consensus 372 ~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~ 411 (450)
T TIGR01421 372 NSSFTPMYYAMTSEKQKCRMKLVCAGKEEKVVGLHGIGDG 411 (450)
T ss_pred EEEcChhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCC
Confidence 000 013456888888 47999999999965
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria. |
| >PRK07846 mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=344.39 Aligned_cols=373 Identities=21% Similarity=0.276 Sum_probs=265.6
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCC-Cccchh----------------ccc-------Cc---
Q psy2951 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR-VKLSKQ----------------LDI-------KA--- 95 (1466)
Q Consensus 43 ~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~~-~~~~~~----------------~~~-------~~--- 95 (1466)
++|++||||||||.+||.. +.|.+|.|+|.+.-...-..+ +..++. +.. +.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 78 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWPDI 78 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHHHH
Confidence 3899999999999999876 469999887743211000000 111110 000 00
Q ss_pred --------cccccc-Chhh-hhcCCeEEEeCceEEEeccccccEEEecCCcEEecCEEEEccCCCCCCCCCCCCCCcEEE
Q psy2951 96 --------DSILLR-TEEF-YKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFY 165 (1466)
Q Consensus 96 --------~~~~~~-~~~~-~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~~~~~~~~ 165 (1466)
+++... .... ++..+++++.++..+. +.++|++.+++.+.||+||||||++|+.++ +++.+...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~----~~~~V~v~~g~~~~~d~lViATGs~p~~p~-i~g~~~~~- 152 (451)
T PRK07846 79 VSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFI----GPKTLRTGDGEEITADQVVIAAGSRPVIPP-VIADSGVR- 152 (451)
T ss_pred HHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEe----cCCEEEECCCCEEEeCEEEEcCCCCCCCCC-CCCcCCcc-
Confidence 111111 2233 6678999999987765 357888888888999999999999998654 44443322
Q ss_pred ecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEEcCc
Q psy2951 166 LRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKA 245 (1466)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~ 245 (1466)
+.+.++...+.. .+++++|||+|++|+|+|..++++|.+|+++++.+.++ +.+++++.+.+.+.+ +.||++++++
T Consensus 153 ~~~~~~~~~l~~---~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll-~~~d~~~~~~l~~l~-~~~v~i~~~~ 227 (451)
T PRK07846 153 YHTSDTIMRLPE---LPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL-RHLDDDISERFTELA-SKRWDVRLGR 227 (451)
T ss_pred EEchHHHhhhhh---cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc-cccCHHHHHHHHHHH-hcCeEEEeCC
Confidence 235555555442 35799999999999999999999999999999988766 567888888877655 5689999999
Q ss_pred eEEEEEecCCCCeEEEEcCCCcEEeccEEEEeeccccCcccc--ccCCceecCCccEEECCCCCcCCCCEEEeccccccc
Q psy2951 246 NVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 323 (1466)
Q Consensus 246 ~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~l--~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~ 323 (1466)
++++++.++ +. ..+.+.+++++++|.|++|+|++||++++ +..+++++++|+|.||+++||+.|+|||+|||+..+
T Consensus 228 ~v~~i~~~~-~~-v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~Ts~p~IyA~GD~~~~~ 305 (451)
T PRK07846 228 NVVGVSQDG-SG-VTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRTSAEGVFALGDVSSPY 305 (451)
T ss_pred EEEEEEEcC-CE-EEEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCcccCCCCEEEEeecCCCc
Confidence 999998653 22 33566778899999999999999999985 577899998999999999999999999999999754
Q ss_pred CccCCCCcceeccHHHHHHHHHHHHHHhcCCC----CCCCCCCcccccccceeeEEEEeecCC-----ceE-----EEe-
Q psy2951 324 LHSFYNKNASIGHYQLAQYHGRIAALNMVEKK----TSLSTIPFFWTMLFGVGFRFAGYAAGH-----TQV-----DIV- 388 (1466)
Q Consensus 324 ~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~----~~~~~~p~~~s~~~~~~~~~~G~~~~~-----~~~-----~~~- 388 (1466)
. ....|.+||++++.|+++.. ..+..+|+..-. ...+.++|.+... .++ .+.
T Consensus 306 ~-----------l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~if~--~p~ia~vGlte~~a~~~g~~~~~~~~~~~~ 372 (451)
T PRK07846 306 Q-----------LKHVANHEARVVQHNLLHPDDLIASDHRFVPAAVFT--HPQIASVGLTENEARAAGLDITVKVQNYGD 372 (451)
T ss_pred c-----------ChhHHHHHHHHHHHHHcCCCCccccCCCCCCeEEEC--CCCcEeEeCCHHHHHhcCCCEEEEEEecCc
Confidence 2 34579999999999998652 234566642111 1223334433210 001 100
Q ss_pred -c----ccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----c-cccCcccchhh
Q psy2951 389 -G----DLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----L-PHSHRCLGVVL 444 (1466)
Q Consensus 389 -g----~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~-~~~~p~~~e~~ 444 (1466)
+ ..+..+|.+++.+ +++|+|++++|. +++++.++ .+|+++.+. + .+.|||++|.+
T Consensus 373 ~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~-~ai~~~~t~~~l~~~~~~~hPt~~e~~ 442 (451)
T PRK07846 373 VAYGWAMEDTTGFVKLIADRDTGRLLGAHIIGPQASTLIQPLI-QAMSFGLDAREMARGQYWIHPALPEVV 442 (451)
T ss_pred chhhhhCCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHcCCCHHHHhhCCCccCCcHHHHH
Confidence 1 1235689998886 489999999998 45666666 999999875 3 47999999987
|
|
| >PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=346.72 Aligned_cols=374 Identities=17% Similarity=0.241 Sum_probs=262.6
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCC--CCC-Cccchhc------ccCccc-----------cccc
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP--YDR-VKLSKQL------DIKADS-----------ILLR 101 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~--~~~-~~~~~~~------~~~~~~-----------~~~~ 101 (1466)
+++||+||||||||++||..|+++|++|.|++.++..... ... +..++.+ ..+..+ +...
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRGK 81 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999998887754321000 000 0011111 001111 1122
Q ss_pred ChhhhhcCCeEEEeCceEEEeccccccEEEecC---CcEEecCEEEEccCCCCCCCCCCCCCC---cEEEecCHHHHHhh
Q psy2951 102 TEEFYKDNDIHVIKGKKIISDSELNEKKIKLQD---GTSIDFTKIYLATGSSPRTISQADGVN---KVFYLRTVEDANNI 175 (1466)
Q Consensus 102 ~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~---~~~~~~d~lviAtG~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 175 (1466)
..+.+.+.+++++.++..+. +.+++.+.. ..++.||+||||||++|+.++ +++.. .++ +..+...+
T Consensus 82 ~~~~~~~~gV~~~~g~~~~~----~~~~v~v~~~~~~~~~~~d~vViATGs~~~~p~-i~G~~~~~~v~---~~~~~~~~ 153 (438)
T PRK07251 82 NYAMLAGSGVDLYDAEAHFV----SNKVIEVQAGDEKIELTAETIVINTGAVSNVLP-IPGLADSKHVY---DSTGIQSL 153 (438)
T ss_pred HHHHHHhCCCEEEEEEEEEc----cCCEEEEeeCCCcEEEEcCEEEEeCCCCCCCCC-CCCcCCCCcEE---chHHHhcc
Confidence 33456778999998886543 235666543 246899999999999998654 44432 233 23333333
Q ss_pred cccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCC
Q psy2951 176 APHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEK 255 (1466)
Q Consensus 176 ~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~ 255 (1466)
. ..+++++|||+|++|+|+|..+++.|.+|+++++.+.+++ ..++++.+.+.+.++++||++++++++++++.++
T Consensus 154 ~---~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~-~~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~- 228 (438)
T PRK07251 154 E---TLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILP-REEPSVAALAKQYMEEDGITFLLNAHTTEVKNDG- 228 (438)
T ss_pred h---hcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCC-CCCHHHHHHHHHHHHHcCCEEEcCCEEEEEEecC-
Confidence 2 2467999999999999999999999999999999887764 4578888899999999999999999999998643
Q ss_pred CCeEEEEcCCCcEEeccEEEEeeccccCcccc--ccCCceecCCccEEECCCCCcCCCCEEEecccccccCccCCCCcce
Q psy2951 256 NDVTAANLDNGTTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNAS 333 (1466)
Q Consensus 256 ~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~l--~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~g~~~~ 333 (1466)
+.+ .+. .+++++++|.||+|+|++|+++.+ +..++.++++|++.||+++||+.|+|||+|||++.+.+
T Consensus 229 ~~v-~v~-~~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~~t~~~~IyaiGD~~~~~~~-------- 298 (438)
T PRK07251 229 DQV-LVV-TEDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQTSVPGVFAVGDVNGGPQF-------- 298 (438)
T ss_pred CEE-EEE-ECCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCccc--------
Confidence 222 233 356789999999999999998864 45677888889999999999999999999999875432
Q ss_pred eccHHHHHHHHHHHHHHhcCCCC----CCCCCCcccccccceeeEEEEeecCC-----ce-----EEEe--c----ccCC
Q psy2951 334 IGHYQLAQYHGRIAALNMVEKKT----SLSTIPFFWTMLFGVGFRFAGYAAGH-----TQ-----VDIV--G----DLEA 393 (1466)
Q Consensus 334 ~~~~~~A~~~g~~aa~~i~~~~~----~~~~~p~~~s~~~~~~~~~~G~~~~~-----~~-----~~~~--g----~~~~ 393 (1466)
...|..+|+.++.++++... .+..+|+. -..+..+..+|..... .+ ..+. + ..+.
T Consensus 299 ---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~ 373 (438)
T PRK07251 299 ---TYISLDDFRIVFGYLTGDGSYTLEDRGNVPTT--MFITPPLSQVGLTEKEAKEAGLPYAVKELLVAAMPRAHVNNDL 373 (438)
T ss_pred ---HhHHHHHHHHHHHHHcCCCCccccccCCCCEE--EECCCceEeeeCCHHHHHhcCCCeEEEEEECCcchhhhhcCCC
Confidence 34688899999999986532 23345532 1112223333332210 00 0110 0 1134
Q ss_pred CeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 394 LKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 394 ~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
.+|.+++.+ +++|+|++++|. +++++.++ .+|+.+.+. +++.|||++|.+
T Consensus 374 ~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~-~ai~~~~t~~~l~~~~~~hPt~~e~~ 432 (438)
T PRK07251 374 RGAFKVVVNTETKEILGATLFGEGSQEIINLIT-MAMDNKIPYTYFKKQIFTHPTMAENL 432 (438)
T ss_pred cEEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhcccccCCChHHHH
Confidence 678888886 489999999998 55666766 999998875 799999999987
|
|
| >PRK06327 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-34 Score=347.02 Aligned_cols=380 Identities=25% Similarity=0.344 Sum_probs=268.3
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEc-----CCC----CCCCCCCccchh-----------------cccCc
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFIT-----DEN----FLPYDRVKLSKQ-----------------LDIKA 95 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~-----~~~----~~~~~~~~~~~~-----------------~~~~~ 95 (1466)
..+|++||||||||++||.++++.|.++.|++.. ... ...+.-. .++. ++...
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~-P~k~l~~~a~~~~~~~~~~~~~G~~~ 81 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCI-PSKALLASSEEFENAGHHFADHGIHV 81 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCcccccccc-HHHHHHHHHHHHHHHHhhHHhcCccC
Confidence 3689999999999999999999999998887751 010 0000000 0100 00110
Q ss_pred c-------ccc-----------ccChhhhhcCCeEEEeCceEEEeccccccEEEecC--CcEEecCEEEEccCCCCCCCC
Q psy2951 96 D-------SIL-----------LRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQD--GTSIDFTKIYLATGSSPRTIS 155 (1466)
Q Consensus 96 ~-------~~~-----------~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~--~~~~~~d~lviAtG~~~~~~~ 155 (1466)
. ++. .....+++..+++++.++..+.......+++.+.. +.+++||+||||||++|+.+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p~~~p 161 (475)
T PRK06327 82 DGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPRHLP 161 (475)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCCCCCC
Confidence 0 001 12233455679999999876654444467777643 457999999999999997665
Q ss_pred CCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHH
Q psy2951 156 QADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFE 235 (1466)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~ 235 (1466)
.++.... ..+ +.++...+. ..+++++|||+|++|+|+|..++++|.+|+++++.+.++ +.+++++.+.+.+.|+
T Consensus 162 ~~~~~~~-~~~-~~~~~~~~~---~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-~~~d~~~~~~~~~~l~ 235 (475)
T PRK06327 162 GVPFDNK-IIL-DNTGALNFT---EVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFL-AAADEQVAKEAAKAFT 235 (475)
T ss_pred CCCCCCc-eEE-CcHHHhccc---ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccC-CcCCHHHHHHHHHHHH
Confidence 5442221 122 333333332 235899999999999999999999999999999988665 3578899999999999
Q ss_pred hCCcEEEcCceEEEEEecCCCCeEEEEcCC--C--cEEeccEEEEeeccccCccc--cccCCceecCCccEEECCCCCcC
Q psy2951 236 SKGVKFVMKANVSSFEKNEKNDVTAANLDN--G--TTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETN 309 (1466)
Q Consensus 236 ~~GV~i~~~~~v~~i~~~~~~~~~~v~~~~--g--~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~ 309 (1466)
++||+++++++|++++.+++ .+ .+.+.+ | +++++|.|++|+|++|++++ ++..+++++++|+|.||++++|+
T Consensus 236 ~~gi~i~~~~~v~~i~~~~~-~v-~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~Ts 313 (475)
T PRK06327 236 KQGLDIHLGVKIGEIKTGGK-GV-SVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCRTN 313 (475)
T ss_pred HcCcEEEeCcEEEEEEEcCC-EE-EEEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCCCccC
Confidence 99999999999999986542 23 233332 3 47999999999999999984 46678899999999999999999
Q ss_pred CCCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCCC--CCCCCCcccccccceeeEEEEeecCC-----
Q psy2951 310 VPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT--SLSTIPFFWTMLFGVGFRFAGYAAGH----- 382 (1466)
Q Consensus 310 ~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~--~~~~~p~~~s~~~~~~~~~~G~~~~~----- 382 (1466)
.|+|||+|||+..+ ..+..|..||+.+|.|+++... .+..+|+.. ..+..+..+|.....
T Consensus 314 ~~~VyA~GD~~~~~-----------~~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~~~--~~~pe~a~vGlte~~a~~~g 380 (475)
T PRK06327 314 VPNVYAIGDVVRGP-----------MLAHKAEEEGVAVAERIAGQKGHIDYNTIPWVI--YTSPEIAWVGKTEQQLKAEG 380 (475)
T ss_pred CCCEEEEEeccCCc-----------chHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEE--eCCcceEEEeCCHHHHHHcC
Confidence 99999999998643 2456899999999999997653 344555321 111223333432210
Q ss_pred c-----eEEEec------ccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccch
Q psy2951 383 T-----QVDIVG------DLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGV 442 (1466)
Q Consensus 383 ~-----~~~~~g------~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e 442 (1466)
. ...+.. ..+..+|.+++.+ +++|+|++++|. +++++.++ .+|+.+.+. +++.|||++|
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilG~~~~g~~a~e~i~~~~-~ai~~~~t~~~l~~~~~~hPt~~e 459 (475)
T PRK06327 381 VEYKAGKFPFMANGRALAMGEPDGFVKIIADAKTDEILGVHVIGPNASELIAEAV-VAMEFKASSEDIARICHAHPTLSE 459 (475)
T ss_pred CCEEEEEEcccccchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhcCCcCCCChHH
Confidence 0 011110 1235789999886 489999999998 44566666 999999876 7999999999
Q ss_pred hh
Q psy2951 443 VL 444 (1466)
Q Consensus 443 ~~ 444 (1466)
.+
T Consensus 460 ~~ 461 (475)
T PRK06327 460 VW 461 (475)
T ss_pred HH
Confidence 88
|
|
| >PRK06116 glutathione reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=349.00 Aligned_cols=342 Identities=22% Similarity=0.321 Sum_probs=256.1
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCC----Cccch-----------------hcc-------cC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR----VKLSK-----------------QLD-------IK 646 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~----~~~~~-----------------~~~-------~~ 646 (1466)
.+||+||||||||++||..|+++|++ |+++|+.. +++.. +..++ .++ .+
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~--V~liE~~~-~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~ 80 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAK--VALIEAKR-LGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFD 80 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCe--EEEEeccc-hhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcC
Confidence 58999999999999999999999998 77787752 22110 00000 000 01
Q ss_pred cccc-----------cccCHhHhhhCCcEEEEceEEEEeccccccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCCcE
Q psy2951 647 ADSI-----------LLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKV 715 (1466)
Q Consensus 647 ~~~~-----------~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~~~ 715 (1466)
...+ .....+.+++.||+++.++ +..+ +. +++.+ ++.++.||+||||||++|+.|+++ |.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~-~~~v-~~--~~v~~-~g~~~~~d~lViATGs~p~~p~i~-g~~~~ 154 (450)
T PRK06116 81 WAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGF-ARFV-DA--HTVEV-NGERYTADHILIATGGRPSIPDIP-GAEYG 154 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEc-cC--CEEEE-CCEEEEeCEEEEecCCCCCCCCCC-Cccee
Confidence 1111 1112334566799999998 6666 43 46666 677899999999999999999998 87643
Q ss_pred EEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEc
Q psy2951 716 FYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVM 795 (1466)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~ 795 (1466)
+ +..+...+ ...+++|+|||+|++|+|+|..|++.|.+|+++++.+.++ +.+++++...+.+.|+++||++++
T Consensus 155 ~---~~~~~~~~---~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-~~~~~~~~~~l~~~L~~~GV~i~~ 227 (450)
T PRK06116 155 I---TSDGFFAL---EELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL-RGFDPDIRETLVEEMEKKGIRLHT 227 (450)
T ss_pred E---chhHhhCc---cccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc-cccCHHHHHHHHHHHHHCCcEEEC
Confidence 3 22333222 2247999999999999999999999999999999988766 568899999999999999999999
Q ss_pred cceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCccc--cccCCceeeCCCcEEeCCCCCCCCCCeEEeccccc
Q psy2951 796 KANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAY 873 (1466)
Q Consensus 796 ~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~ 873 (1466)
++++.+++..+++. ..+.+.+|+++++|.||+|+|++|+++. ++..+++++++|+|.||+++||++|+|||+|||+.
T Consensus 228 ~~~V~~i~~~~~g~-~~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~ 306 (450)
T PRK06116 228 NAVPKAVEKNADGS-LTLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNTNVPGIYAVGDVTG 306 (450)
T ss_pred CCEEEEEEEcCCce-EEEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCCcCCCCEEEEeecCC
Confidence 99999998543332 3467778889999999999999999885 57789999999999999999999999999999986
Q ss_pred cCCcccCCceeeeccHHHHHHHHHHHHHHhccCCC----cCcccCeeeeeecCc-eeEEeeccCC------CC--ceeEe
Q psy2951 874 APLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT----SLSTIPFFWTMLFGV-GFRFAGYAAG------HT--QVDIV 940 (1466)
Q Consensus 874 ~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~----~~~~~~~~~~~~~~~-~~~~~g~~~~------~~--~~~~~ 940 (1466)
.+. .+..|+.||+.||+||++... .+..+|. .+|.. .+..+|+++. .+ .....
T Consensus 307 ~~~-----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~---~if~~p~~a~vGlte~~a~~~~~~~~~~~~~ 372 (450)
T PRK06116 307 RVE-----------LTPVAIAAGRRLSERLFNNKPDEKLDYSNIPT---VVFSHPPIGTVGLTEEEAREQYGEDNVKVYR 372 (450)
T ss_pred CcC-----------cHHHHHHHHHHHHHHHhCCCCCCcCCcCCCCe---EEeCCCccEEeeCCHHHHHHhCCCCcEEEEE
Confidence 433 347899999999999998543 2345553 34554 6778887652 11 11111
Q ss_pred c----------ccccceEEEEEe--cCCeEEEEEeecCc
Q psy2951 941 G----------DLEALKFTAYYS--NADKVLAILTVGMD 967 (1466)
Q Consensus 941 ~----------~~~~~~~~~~~~--~~~~i~g~~~~g~~ 967 (1466)
. .-++..|.|+++ ++++++|+++++.+
T Consensus 373 ~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~ 411 (450)
T PRK06116 373 SSFTPMYTALTGHRQPCLMKLVVVGKEEKVVGLHGIGFG 411 (450)
T ss_pred EecchhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCC
Confidence 0 013467899988 46899999999966
|
|
| >TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=346.60 Aligned_cols=343 Identities=21% Similarity=0.303 Sum_probs=256.0
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCC----ccchh----------------cc-------cCc
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV----KLSKQ----------------LD-------IKA 647 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~----~~~~~----------------~~-------~~~ 647 (1466)
.+||+||||||||++||..++++|++ |+++|+. .+++.-. ..++. ++ .+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~--V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 78 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAK--VAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDW 78 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCc--EEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCH
Confidence 58999999999999999999999998 7777774 2222110 00110 00 000
Q ss_pred -----------ccccccCHhHhhhCCcEEEEceEEEEeccccccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCCcEE
Q psy2951 648 -----------DSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVF 716 (1466)
Q Consensus 648 -----------~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~~~~ 716 (1466)
..+...+...+++.|++++.++ +..+ +.....+. .++.++.||+||||||++|..|++| |.+...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~-~~~v-~~~~v~v~-~~g~~~~~d~lIiATGs~p~~p~i~-G~~~~~ 154 (446)
T TIGR01424 79 KKLLQKKDDEIARLSGLYKRLLANAGVELLEGR-ARLV-GPNTVEVL-QDGTTYTAKKILIAVGGRPQKPNLP-GHELGI 154 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEE-EEEe-cCCEEEEe-cCCeEEEcCEEEEecCCcCCCCCCC-Ccccee
Confidence 1122233445667899999986 7777 66544443 3567899999999999999999998 865322
Q ss_pred EecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEcc
Q psy2951 717 YLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMK 796 (1466)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~ 796 (1466)
+.+++..+. ..+++++|||+|++|+|+|..+++.|.+|+++++.+.++ +.+++++.+.+.+.|+++||+++++
T Consensus 155 ---~~~~~~~l~---~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l-~~~d~~~~~~l~~~l~~~gV~i~~~ 227 (446)
T TIGR01424 155 ---TSNEAFHLP---TLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL-RGFDDDMRALLARNMEGRGIRIHPQ 227 (446)
T ss_pred ---chHHhhccc---ccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC-cccCHHHHHHHHHHHHHCCCEEEeC
Confidence 334443332 248999999999999999999999999999999998766 4588999999999999999999999
Q ss_pred ceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCccc--cccCCceeeCCCcEEeCCCCCCCCCCeEEecccccc
Q psy2951 797 ANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYA 874 (1466)
Q Consensus 797 ~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~ 874 (1466)
+++++++..+++ ..+.+.+++++++|.||+|+|++|++++ ++..|++++++|+|.||+++||+.|+|||+|||+..
T Consensus 228 ~~v~~i~~~~~~--~~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~ 305 (446)
T TIGR01424 228 TSLTSITKTDDG--LKVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSRTSIPSIYAVGDVTDR 305 (446)
T ss_pred CEEEEEEEcCCe--EEEEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCccCCCCEEEeeccCCC
Confidence 999999843332 3466678889999999999999999885 578899999999999999999999999999999865
Q ss_pred CCcccCCceeeeccHHHHHHHHHHHHHHhccCC-CcC--cccCeeeeeecCc-eeEEeeccCC-------CCceeE-e--
Q psy2951 875 PLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK-TSL--STIPFFWTMLFGV-GFRFAGYAAG-------HTQVDI-V-- 940 (1466)
Q Consensus 875 ~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~-~~~--~~~~~~~~~~~~~-~~~~~g~~~~-------~~~~~~-~-- 940 (1466)
+. .++.|.+||+++|+||++.. .++ ..+|. .+|.. .+..+|+++. .+-... .
T Consensus 306 ~~-----------l~~~A~~~g~~~a~~i~~~~~~~~~~~~~p~---~if~~p~ia~vG~te~~a~~~~~~~~~~~~~~~ 371 (446)
T TIGR01424 306 IN-----------LTPVAIMEATCFANTEFGNNPTKFDHDLIAT---AVFSQPPLGTVGLTEEEAREKFTGDILVYRAGF 371 (446)
T ss_pred cc-----------chhHHHHHHHHHHHHHhcCCCCccCcCCCCe---EEeCCchhEEEECCHHHHHhhcCCCEEEEEEec
Confidence 43 34789999999999999743 222 34553 34543 5777887642 110001 0
Q ss_pred -c------ccccceEEEEEe--cCCeEEEEEeecCc
Q psy2951 941 -G------DLEALKFTAYYS--NADKVLAILTVGMD 967 (1466)
Q Consensus 941 -~------~~~~~~~~~~~~--~~~~i~g~~~~g~~ 967 (1466)
. .-.+..|.|+++ ++++++|+++++.+
T Consensus 372 ~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~ 407 (446)
T TIGR01424 372 RPMKNTFSGRQEKTLMKLVVDEKDDKVLGAHMVGPD 407 (446)
T ss_pred CchHhHhhcCCCceEEEEEEeCCCCEEEEEEEECCC
Confidence 0 012457899988 47999999999976
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. |
| >PTZ00318 NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=352.05 Aligned_cols=307 Identities=22% Similarity=0.309 Sum_probs=249.5
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhc--cCcccccccChhhhccCCcEEEcCCe
Q psy2951 1064 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD--IKADSILLRTEEFYKDNDIHVIKGKK 1141 (1466)
Q Consensus 1064 ~~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~ 1141 (1466)
..+++|||||||+||+.+|..|+..+. +|||||+++++.|. |.+..... .+.+.+..+....+...+++++.+.
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~--~ItlI~~~~~~~~~-~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~- 83 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKY--NITVISPRNHMLFT-PLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRAV- 83 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCC--eEEEEcCCCCcchh-hhHHHhcccCCChHHhHHHHHHHhccCCeEEEEEE-
Confidence 346789999999999999999976555 99999999988874 44444332 2233333333455666788988775
Q ss_pred EEEeecCCCCeEEe----------cCCcEEecCeEEEecCCCCCcCCCCCCCC-cEEEecCHHHHHhhhcccC-------
Q psy2951 1142 IISDSELNEKKIKL----------QDGTSIDFTKIYLATGSSPRTISQADGVN-KVFYLRTVEDANNIAPHIT------- 1203 (1466)
Q Consensus 1142 v~~i~d~~~~~v~~----------~~g~~~~yd~lvlAtG~~~~~~~~~~g~~-~v~~~~~~~~~~~l~~~~~------- 1203 (1466)
|+.| |++++.|.+ +++.+++||+||||||++++.+++| |.+ +++.+++++++.++++.+.
T Consensus 84 V~~I-d~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~ip-G~~e~~~~~~~~~~a~~~~~~l~~~~~~~~ 161 (424)
T PTZ00318 84 VYDV-DFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFNIP-GVEERAFFLKEVNHARGIRKRIVQCIERAS 161 (424)
T ss_pred EEEE-EcCCCEEEEecccccccccCCceEecCCEEEECCCcccCCCCCC-CHHHcCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999 999999988 4677899999999999999999999 876 6778889999888765431
Q ss_pred ----------CCCeEEEEcCCHHHHHHHHHHhc--------------CCCeEEEEcCCCcCCcccccHHHHHHHHHHHHh
Q psy2951 1204 ----------PESNVVVIGSSFIGMEAAAFCAS--------------KVKSVTVVGRGAVPFQESLGKEVGERITKLFES 1259 (1466)
Q Consensus 1204 ----------~~~~vvVvG~g~~g~e~a~~l~~--------------~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~ 1259 (1466)
..++++|||+|++|+|+|..|+. .+.+|+++++.+++++ .+++++.+.+.+.+++
T Consensus 162 ~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~-~~~~~~~~~~~~~L~~ 240 (424)
T PTZ00318 162 LPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLG-SFDQALRKYGQRRLRR 240 (424)
T ss_pred CCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccc-cCCHHHHHHHHHHHHH
Confidence 12489999999999999998875 3789999999988886 6889999999999999
Q ss_pred CCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccCccccccCCceeeCCCeEEeCCCcc-ccCCCEEE
Q psy2951 1260 KGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLE-TNVPGVYA 1338 (1466)
Q Consensus 1260 ~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~-t~~~~v~a 1338 (1466)
+||+++++++|+++. .+ .|.++||+++++|.+|+++|..|+ ++++.++++++++|+|.||+++| +++|+|||
T Consensus 241 ~gV~v~~~~~v~~v~-~~-----~v~~~~g~~i~~d~vi~~~G~~~~-~~~~~~~l~~~~~G~I~Vd~~l~~~~~~~IfA 313 (424)
T PTZ00318 241 LGVDIRTKTAVKEVL-DK-----EVVLKDGEVIPTGLVVWSTGVGPG-PLTKQLKVDKTSRGRISVDDHLRVKPIPNVFA 313 (424)
T ss_pred CCCEEEeCCeEEEEe-CC-----EEEECCCCEEEccEEEEccCCCCc-chhhhcCCcccCCCcEEeCCCcccCCCCCEEE
Confidence 999999999999997 32 377899999999999999999998 68888899888889999999999 57999999
Q ss_pred ecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCCCCCC-CCCccceec
Q psy2951 1339 GGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSL-STIPFFWTM 1390 (1466)
Q Consensus 1339 ~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~~~~-~~~p~~w~~ 1390 (1466)
+|||+..+... ....+..|..||+.+|+||.+....- ...||.|+.
T Consensus 314 iGD~a~~~~~~------~~~~~~~A~~qg~~~A~ni~~~l~g~~~~~~~~~~~ 360 (424)
T PTZ00318 314 LGDCAANEERP------LPTLAQVASQQGVYLAKEFNNELKGKPMSKPFVYRS 360 (424)
T ss_pred EeccccCCCCC------CCCchHHHHHHHHHHHHHHHHHhcCCCCCCCCeecC
Confidence 99999875321 12356889999999999998643221 456777754
|
|
| >PRK05976 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-34 Score=347.33 Aligned_cols=382 Identities=21% Similarity=0.291 Sum_probs=263.9
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCC-Cccchh----------------ccc-------Cccc
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR-VKLSKQ----------------LDI-------KADS 97 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~~-~~~~~~----------------~~~-------~~~~ 97 (1466)
..+||+||||||||++||..|+++|++|.|++...-....... +..++. +.. +...
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 82 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGKLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDFAK 82 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCHHH
Confidence 4699999999999999999999999999998753211000000 000110 000 0000
Q ss_pred -----------ccccChhhhhcCCeEEEeCceEEEecc-----ccccEEEecCC--cEEecCEEEEccCCCCCCCCCCCC
Q psy2951 98 -----------ILLRTEEFYKDNDIHVIKGKKIISDSE-----LNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQADG 159 (1466)
Q Consensus 98 -----------~~~~~~~~~~~~~v~~~~~~~v~~~~~-----~~~~~v~~~~~--~~~~~d~lviAtG~~~~~~~~~~~ 159 (1466)
+......++++.+++++.++....+.. ....++.+.++ .++.||+||||||++|+.+|..+.
T Consensus 83 ~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~ 162 (472)
T PRK05976 83 VQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVELPGLPF 162 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCCCCCCCC
Confidence 111223455677999999987654321 11455666666 479999999999999976654432
Q ss_pred CCcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCc
Q psy2951 160 VNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGV 239 (1466)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV 239 (1466)
...+.+ +..+...+.. .+++++|||||++|+|+|..|++.|.+|+++++.+.++ +.+++++.+.+.+.|+++||
T Consensus 163 -~~~~~~-~~~~~~~~~~---~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il-~~~~~~~~~~l~~~l~~~gI 236 (472)
T PRK05976 163 -DGEYVI-SSDEALSLET---LPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL-PTEDAELSKEVARLLKKLGV 236 (472)
T ss_pred -CCceEE-cchHhhCccc---cCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC-CcCCHHHHHHHHHHHHhcCC
Confidence 222222 3344444322 35799999999999999999999999999999988765 45788999999999999999
Q ss_pred EEEcCceEEEEEecCCCCeEEEEcCCC--cEEeccEEEEeeccccCcccc--ccCCceecCCccEEECCCCCcCCCCEEE
Q psy2951 240 KFVMKANVSSFEKNEKNDVTAANLDNG--TTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYA 315 (1466)
Q Consensus 240 ~i~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~Vi~a~G~~p~~~~l--~~~gl~~~~~g~i~vd~~~~t~~~~iya 315 (1466)
++++++++++++..+++.+..+.+.+| +++++|.||+|+|++|+++.+ +..++.. .+|++.||++++|+.|+|||
T Consensus 237 ~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~g~i~Vd~~l~ts~~~IyA 315 (472)
T PRK05976 237 RVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDV-EGGFIQIDDFCQTKERHIYA 315 (472)
T ss_pred EEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCcee-cCCEEEECCCcccCCCCEEE
Confidence 999999999997521233444444555 469999999999999999754 4555554 46899999999999999999
Q ss_pred ecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCC-CC--CCCCCcccccccceeeEEEEeecC------Cc---
Q psy2951 316 GGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK-TS--LSTIPFFWTMLFGVGFRFAGYAAG------HT--- 383 (1466)
Q Consensus 316 ~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~-~~--~~~~p~~~s~~~~~~~~~~G~~~~------~~--- 383 (1466)
+|||+..+ ..+..|..||+.++.|+.+.. .. +..+|. ....+..+..+|.... .+
T Consensus 316 iGD~~~~~-----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~--~~~~~p~~a~vG~te~~a~~~g~~~~~ 382 (472)
T PRK05976 316 IGDVIGEP-----------QLAHVAMAEGEMAAEHIAGKKPRPFDYAAIPA--CCYTDPEVASVGLTEEEAKEAGYDVKV 382 (472)
T ss_pred eeecCCCc-----------ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCE--EEECcCceEEEeCCHHHHHHcCCCEEE
Confidence 99998643 346689999999999998764 22 233442 1111222333333221 00
Q ss_pred -eEEEec------ccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 384 -QVDIVG------DLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 384 -~~~~~g------~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
...+.. ..+..+|.+++.+ +++|+|++++|. ++++..++ .+|+.+.+. ++++|||++|.+
T Consensus 383 ~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~-~ai~~~~t~~~l~~~~~~hPt~~e~~ 458 (472)
T PRK05976 383 GKFPFAANGKALTYGESDGFVKVVADRDTHDILGVQAVGPHVTELISEFA-LALELGARLWEVAGTIHPHPTLSEAI 458 (472)
T ss_pred EEEECCcchhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhhCcccCCChHHHH
Confidence 001100 1235789888886 489999999998 44566666 899988876 799999999988
|
|
| >TIGR02053 MerA mercuric reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=345.03 Aligned_cols=375 Identities=19% Similarity=0.271 Sum_probs=266.8
Q ss_pred CcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCC-Cccchh---------------c-------ccCc-----
Q psy2951 44 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR-VKLSKQ---------------L-------DIKA----- 95 (1466)
Q Consensus 44 ~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~~-~~~~~~---------------~-------~~~~----- 95 (1466)
+||+||||||||++||..|+++|+++.|++.+.-...-..+ +..++. + ..+.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 80 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGPLGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELLE 80 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCcccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHHH
Confidence 69999999999999999999999998887743211100000 000000 0 0000
Q ss_pred --ccccc-----cChhhhhcCCeEEEeCceEEEeccccccEEEecCCc-EEecCEEEEccCCCCCCCCCCCCCCcEEEec
Q psy2951 96 --DSILL-----RTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGT-SIDFTKIYLATGSSPRTISQADGVNKVFYLR 167 (1466)
Q Consensus 96 --~~~~~-----~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~-~~~~d~lviAtG~~~~~~~~~~~~~~~~~~~ 167 (1466)
+++.. .+..++++.+++++.++..+. +.+++.+.++. .+.||+||||||++|+.++ +++.+....+
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~----~~~~v~v~~g~~~~~~~~lIiATGs~p~~p~-i~G~~~~~~~- 154 (463)
T TIGR02053 81 GKREVVEELRHEKYEDVLSSYGVDYLRGRARFK----DPKTVKVDLGREVRGAKRFLIATGARPAIPP-IPGLKEAGYL- 154 (463)
T ss_pred HHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEc----cCCEEEEcCCeEEEEeCEEEEcCCCCCCCCC-CCCcccCceE-
Confidence 11111 133556778999999887653 24677776653 6899999999999997553 5554332222
Q ss_pred CHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEEcCceE
Q psy2951 168 TVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANV 247 (1466)
Q Consensus 168 ~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v 247 (1466)
+..+...+. ..+++++|||+|++|+|+|..|++.|.+|+++++.+.+++ .+++++...+.+.+++.||+++++++|
T Consensus 155 ~~~~~~~~~---~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-~~d~~~~~~l~~~l~~~gV~i~~~~~V 230 (463)
T TIGR02053 155 TSEEALALD---RIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLP-REEPEISAAVEEALAEEGIEVVTSAQV 230 (463)
T ss_pred CchhhhCcc---cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCC-ccCHHHHHHHHHHHHHcCCEEEcCcEE
Confidence 333433332 2347999999999999999999999999999999887664 578899999999999999999999999
Q ss_pred EEEEecCCCCeEEEEcC---CCcEEeccEEEEeeccccCcc-c-cccCCceecCCccEEECCCCCcCCCCEEEecccccc
Q psy2951 248 SSFEKNEKNDVTAANLD---NGTTIPADLVIVGIGTVLNTN-Y-LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYA 322 (1466)
Q Consensus 248 ~~i~~~~~~~~~~v~~~---~g~~i~~D~Vi~a~G~~p~~~-~-l~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD~~~~ 322 (1466)
++++.+++ ...+.+. +++++++|.||+|+|++|+++ + ++..+++++++|+|.||+++||+.|+|||+|||+..
T Consensus 231 ~~i~~~~~--~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~VyAiGD~~~~ 308 (463)
T TIGR02053 231 KAVSVRGG--GKIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRTSNPGIYAAGDVTGG 308 (463)
T ss_pred EEEEEcCC--EEEEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCccCCCCCEEEeeecCCC
Confidence 99986532 2223322 346899999999999999998 4 677889999899999999999999999999999875
Q ss_pred cCccCCCCcceeccHHHHHHHHHHHHHHhcCC-CCC--CCCCCcccccccceeeEEEEeecCC-----ceE-----EEec
Q psy2951 323 PLHSFYNKNASIGHYQLAQYHGRIAALNMVEK-KTS--LSTIPFFWTMLFGVGFRFAGYAAGH-----TQV-----DIVG 389 (1466)
Q Consensus 323 ~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~-~~~--~~~~p~~~s~~~~~~~~~~G~~~~~-----~~~-----~~~g 389 (1466)
+ ..+..|..||+.+|.|+++. ... +..+|+ .-.....+..+|.+... .++ .+..
T Consensus 309 ~-----------~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~--~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~ 375 (463)
T TIGR02053 309 L-----------QLEYVAAKEGVVAAENALGGANAKLDLLVIPR--VVFTDPAVASVGLTEAEAQKAGIECDCRTLPLTN 375 (463)
T ss_pred c-----------ccHhHHHHHHHHHHHHhcCCCCCccCcCCCCe--EEeccCceEEEeCCHHHHHhcCCCeEEEEEeccc
Confidence 3 24568999999999999975 332 234442 22222334445543210 011 1110
Q ss_pred ------ccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 390 ------DLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 390 ------~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
..+..+|.+++.+ +++|+|++++|. ++++..++ .+|+.+.+. ++++|||++|.+
T Consensus 376 ~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~-~ai~~~~t~~~l~~~~~~~pt~~e~~ 444 (463)
T TIGR02053 376 VPRARINRDTRGFIKLVAEPGTGKVLGVQVVAPEAAEVINEAA-LAIRAGMTVDDLIDTLHPFPTMAEGL 444 (463)
T ss_pred chHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhhCcccCCChHHHH
Confidence 1135789988886 489999999998 45666666 899988875 688999999988
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH. |
| >PRK14727 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=344.99 Aligned_cols=376 Identities=20% Similarity=0.268 Sum_probs=263.2
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCC---CCCCCCCccchh----------------ccc-------Cc
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN---FLPYDRVKLSKQ----------------LDI-------KA 95 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~---~~~~~~~~~~~~----------------~~~-------~~ 95 (1466)
.++|++||||||||+++|..|++.|.++.+++..+.- +... .+..++. ... +.
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~-GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 93 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNV-GCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSIDR 93 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccc-cccccHHHHHHHHHHHHHhhccccCcccCCCccCH
Confidence 3689999999999999999999999998887654210 0000 0000000 000 00
Q ss_pred ccc-------cc-----cChhhhhcC-CeEEEeCceEEEeccccccEEEecCCc--EEecCEEEEccCCCCCCCCCCCCC
Q psy2951 96 DSI-------LL-----RTEEFYKDN-DIHVIKGKKIISDSELNEKKIKLQDGT--SIDFTKIYLATGSSPRTISQADGV 160 (1466)
Q Consensus 96 ~~~-------~~-----~~~~~~~~~-~v~~~~~~~v~~~~~~~~~~v~~~~~~--~~~~d~lviAtG~~~~~~~~~~~~ 160 (1466)
..+ .. .+...++.. +++++.|...+.+ .....+.+.++. ++.||+||||||++|+.++ +++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~--~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~-i~G~ 170 (479)
T PRK14727 94 GLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKD--GNTLVVRLHDGGERVLAADRCLIATGSTPTIPP-IPGL 170 (479)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEec--CCEEEEEeCCCceEEEEeCEEEEecCCCCCCCC-CCCc
Confidence 000 00 122334433 8999998876653 334555555653 6999999999999998654 5554
Q ss_pred CcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcE
Q psy2951 161 NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVK 240 (1466)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~ 240 (1466)
.....+.. .+.... . ..+++++|||+|++|+|+|..+++.|.+|+++++. ..+ +.+++++.+.+.+.|++.||+
T Consensus 171 ~~~~~~~~-~~~l~~--~-~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~-~~l-~~~d~~~~~~l~~~L~~~GV~ 244 (479)
T PRK14727 171 MDTPYWTS-TEALFS--D-ELPASLTVIGSSVVAAEIAQAYARLGSRVTILARS-TLL-FREDPLLGETLTACFEKEGIE 244 (479)
T ss_pred Cccceecc-hHHhcc--c-cCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC-CCC-CcchHHHHHHHHHHHHhCCCE
Confidence 32222222 222221 1 23579999999999999999999999999999885 333 457889999999999999999
Q ss_pred EEcCceEEEEEecCCCCeEEEEcCCCcEEeccEEEEeeccccCccc--cccCCceecCCccEEECCCCCcCCCCEEEecc
Q psy2951 241 FVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGD 318 (1466)
Q Consensus 241 i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD 318 (1466)
+++++++++++.+++ . ..+.++++ ++++|.||+|+|+.||+.+ ++..|++++++|+|.||+++||+.|+|||+||
T Consensus 245 i~~~~~V~~i~~~~~-~-~~v~~~~g-~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~Ts~~~IyA~GD 321 (479)
T PRK14727 245 VLNNTQASLVEHDDN-G-FVLTTGHG-ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMETSAPDIYAAGD 321 (479)
T ss_pred EEcCcEEEEEEEeCC-E-EEEEEcCC-eEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCeecCCCCEEEeee
Confidence 999999999976432 2 23444444 6999999999999999986 46678999988999999999999999999999
Q ss_pred cccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCCCC--CCCCCcccccccceeeEEEEeecCC------c----eEE
Q psy2951 319 IAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS--LSTIPFFWTMLFGVGFRFAGYAAGH------T----QVD 386 (1466)
Q Consensus 319 ~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~--~~~~p~~~s~~~~~~~~~~G~~~~~------~----~~~ 386 (1466)
|+..+. ....|..||+.+|.||++.... +..+|+. -.....+..+|.+... + ...
T Consensus 322 ~~~~~~-----------~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~~--~~~~p~ia~vGlte~~a~~~g~~~~~~~~~ 388 (479)
T PRK14727 322 CSDLPQ-----------FVYVAAAAGSRAGINMTGGNATLDLSAMPAV--IFTDPQVATVGLSEAKAHLSGIETISRVLT 388 (479)
T ss_pred cCCcch-----------hhhHHHHHHHHHHHHHcCCCcccccccCCcE--EEecCceeeeeCCHHHHHHcCCceEEEEEE
Confidence 997553 3457999999999999976443 3444521 1222234444443211 0 001
Q ss_pred E------ecccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 387 I------VGDLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 387 ~------~g~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
+ ...-+..+|.+++.+ +++|+|++++|. +++++.++ .+|+.+.+. ++++|||++|.+
T Consensus 389 ~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~-~ai~~~~t~~~l~~~~~~hPt~~E~~ 460 (479)
T PRK14727 389 MENVPRALANFETDGFIKLVAEEGTRKLIGAQILAHEGGELIQSAA-LAIHNRMTVEELADQLFPYLTMVEGL 460 (479)
T ss_pred cccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHcCCCHHHHhcCCccCCChHHHH
Confidence 1 011125689988886 489999999998 45666666 899998876 799999999988
|
|
| >PRK06467 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-34 Score=345.00 Aligned_cols=348 Identities=22% Similarity=0.273 Sum_probs=253.4
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCC----Cccchh----------------cc-------cC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR----VKLSKQ----------------LD-------IK 646 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~----~~~~~~----------------~~-------~~ 646 (1466)
.++||+||||||||++||..|+++|.+ |+++|+.+.+++.- +..++. ++ .+
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~--V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 80 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLE--TVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKID 80 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCc--EEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcC
Confidence 468999999999999999999999988 78888754332211 000000 00 11
Q ss_pred cccccccC-----------HhHhhhCCcEEEEceEEEEeccccccEEEccCC--CEEecCEEEEcCCCCCCcCCCCCCCC
Q psy2951 647 ADSILLRT-----------EEFYKDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQADGVN 713 (1466)
Q Consensus 647 ~~~~~~~~-----------~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~--~~~~~d~lviAtG~~~~~~~~~~g~~ 713 (1466)
...+..+. ...+++.||+++.++ +..+ +.....+...++ .++.||+||||||++|+.++..++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~-a~~~-~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~~~ 158 (471)
T PRK06467 81 IDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGL-GKFT-GGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPHDD 158 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEc-cCCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCCCCCCC
Confidence 11121111 133556799999998 6665 555445555455 47999999999999998544331432
Q ss_pred -cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcE
Q psy2951 714 -KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVK 792 (1466)
Q Consensus 714 -~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~ 792 (1466)
.++ +..++..+. ..+++++|||+|++|+|+|..|++.|.+||++++.++++ +.+++++...+.+.|+++ |+
T Consensus 159 ~~v~---~~~~~~~~~---~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il-~~~d~~~~~~~~~~l~~~-v~ 230 (471)
T PRK06467 159 PRIW---DSTDALELK---EVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI-PAADKDIVKVFTKRIKKQ-FN 230 (471)
T ss_pred CcEE---ChHHhhccc---cCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC-CcCCHHHHHHHHHHHhhc-eE
Confidence 232 344444433 347999999999999999999999999999999998877 468999999999999998 99
Q ss_pred EEccceEEEEEecCCCceEEEECCC--C--cEEecCEEEEccccccCccc--cccCCceeeCCCcEEeCCCCCCCCCCeE
Q psy2951 793 FVMKANVSSFEKNEKNDVTAANLDN--G--TTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVY 866 (1466)
Q Consensus 793 ~~~~~~v~~i~~~~~~~~~~v~~~~--g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t~~~~iy 866 (1466)
+++++++++++..++ .+ .+.+.+ + +++++|.||+++|++|++++ ++..|++++++|+|.||+++||+.|+||
T Consensus 231 i~~~~~v~~i~~~~~-~~-~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t~~p~Vy 308 (471)
T PRK06467 231 IMLETKVTAVEAKED-GI-YVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRTNVPHIF 308 (471)
T ss_pred EEcCCEEEEEEEcCC-EE-EEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCcccCCCCEE
Confidence 999999999984333 22 344333 2 46999999999999999985 4678899999999999999999999999
Q ss_pred EeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCCcC--cccCeeeeeecCceeEEeeccCC------CC--c
Q psy2951 867 AGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSL--STIPFFWTMLFGVGFRFAGYAAG------HT--Q 936 (1466)
Q Consensus 867 a~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~------~~--~ 936 (1466)
|+|||+..+. .++.|.+||+.||.+|++....+ ..+|. ..++.+.+..+|+++. .+ .
T Consensus 309 AiGDv~~~~~-----------la~~A~~eG~~aa~~i~g~~~~~~~~~~p~--~~~~~p~ia~vGlte~ea~~~g~~~~~ 375 (471)
T PRK06467 309 AIGDIVGQPM-----------LAHKGVHEGHVAAEVIAGKKHYFDPKVIPS--IAYTEPEVAWVGLTEKEAKEEGIEYET 375 (471)
T ss_pred EehhhcCCcc-----------cHHHHHHHHHHHHHHHcCCCCCCCCCCCCe--EEECCCceeEEECCHHHHHhcCCCeEE
Confidence 9999986543 34789999999999999865544 34553 3366777888888652 11 0
Q ss_pred eeEec--------ccccceEEEEEe--cCCeEEEEEeecCch
Q psy2951 937 VDIVG--------DLEALKFTAYYS--NADKVLAILTVGMDP 968 (1466)
Q Consensus 937 ~~~~~--------~~~~~~~~~~~~--~~~~i~g~~~~g~~~ 968 (1466)
..... .-+...|+|+++ ++++++|++++|.+.
T Consensus 376 ~~~~~~~~~~~~~~~~~~g~~kli~d~~t~~ilG~~~vg~~a 417 (471)
T PRK06467 376 ATFPWAASGRAIASDCADGMTKLIFDKETHRVLGGAIVGTNA 417 (471)
T ss_pred EEEecCcchhhhhCCCCceEEEEEEECCCCeEEEEEEECCCH
Confidence 01110 112466899888 468999999999874
|
|
| >PRK06370 mercuric reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-34 Score=346.60 Aligned_cols=347 Identities=20% Similarity=0.345 Sum_probs=253.0
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCC----Cccch----------------hc--------cc
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR----VKLSK----------------QL--------DI 645 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~----~~~~~----------------~~--------~~ 645 (1466)
.++||+||||||||++||..|+++|++ |+++|+... ++.. +-.++ .+ ..
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~~G~~--v~lie~~~~-GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 80 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAGLGMK--VALIERGLL-GGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSV 80 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCe--EEEEecCcc-CCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCcc
Confidence 358999999999999999999999998 777777531 1110 00000 00 11
Q ss_pred Cccccc-----------ccCHhHhhhC-CcEEEEceEEEEeccccccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCC
Q psy2951 646 KADSIL-----------LRTEEFYKDN-DIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN 713 (1466)
Q Consensus 646 ~~~~~~-----------~~~~~~~~~~-gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~ 713 (1466)
+...+. .....++++. ||+++.++.+ .+ +.+++.+ ++.++.||+||||||++|+.|++| |.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~-~~---~~~~v~v-~~~~~~~d~lViATGs~p~~p~i~-G~~ 154 (463)
T PRK06370 81 DFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHAR-FE---SPNTVRV-GGETLRAKRIFINTGARAAIPPIP-GLD 154 (463)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEE-Ec---cCCEEEE-CcEEEEeCEEEEcCCCCCCCCCCC-CCC
Confidence 111111 1233455666 9999999843 33 3455655 456899999999999999999999 876
Q ss_pred cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEE
Q psy2951 714 KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKF 793 (1466)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~ 793 (1466)
....+ +..+.... ...+++|+|||+|++|+|+|..|++.|.+|+++++.+.++ +.+++++.+.+.+.|+++||++
T Consensus 155 ~~~~~-~~~~~~~~---~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l-~~~~~~~~~~l~~~l~~~GV~i 229 (463)
T PRK06370 155 EVGYL-TNETIFSL---DELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLL-PREDEDVAAAVREILEREGIDV 229 (463)
T ss_pred cCceE-cchHhhCc---cccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCC-cccCHHHHHHHHHHHHhCCCEE
Confidence 32222 22333222 2347999999999999999999999999999999998776 4578889999999999999999
Q ss_pred EccceEEEEEecCCCceEEEEC-CCCcEEecCEEEEccccccCcc-c-cccCCceeeCCCcEEeCCCCCCCCCCeEEecc
Q psy2951 794 VMKANVSSFEKNEKNDVTAANL-DNGTTIPADLVIVGIGTVLNTN-Y-LDGKGVELNGQKAVVVNEYLETNVPGVYAGGD 870 (1466)
Q Consensus 794 ~~~~~v~~i~~~~~~~~~~v~~-~~g~~i~~D~vi~a~G~~p~~~-~-~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD 870 (1466)
++++++.+++..+++....+.. .++.++++|.||+|+|++|+++ + ++..|++++++|+|.||+++||+.|+|||+||
T Consensus 230 ~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l~t~~~~IyAiGD 309 (463)
T PRK06370 230 RLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLRTTNPGIYAAGD 309 (463)
T ss_pred EeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCCcCCCCCEEEeee
Confidence 9999999998543322222332 3345899999999999999988 4 67889999999999999999999999999999
Q ss_pred ccccCCcccCCceeeeccHHHHHHHHHHHHHHhccC-CCcC--cccCeeeeeecCceeEEeeccCC------CC--ceeE
Q psy2951 871 IAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEK-KTSL--STIPFFWTMLFGVGFRFAGYAAG------HT--QVDI 939 (1466)
Q Consensus 871 ~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~-~~~~--~~~~~~~~~~~~~~~~~~g~~~~------~~--~~~~ 939 (1466)
|+..+.. .+.|..||++||+||++. ...+ ..+|+ ..+++..+.++|+++. ++ ....
T Consensus 310 ~~~~~~~-----------~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~--~~~~~p~ia~vG~te~~a~~~g~~~~~~~~ 376 (463)
T PRK06370 310 CNGRGAF-----------THTAYNDARIVAANLLDGGRRKVSDRIVPY--ATYTDPPLARVGMTEAEARKSGRRVLVGTR 376 (463)
T ss_pred cCCCccc-----------HHHHHHHHHHHHHHHhCCCCCCcccccCCe--EEEcCCCcEeeeCCHHHHHHcCCCeEEEEE
Confidence 9876543 368999999999999975 3332 34443 3356667888887652 11 0111
Q ss_pred ec--------ccccceEEEEEe--cCCeEEEEEeecCc
Q psy2951 940 VG--------DLEALKFTAYYS--NADKVLAILTVGMD 967 (1466)
Q Consensus 940 ~~--------~~~~~~~~~~~~--~~~~i~g~~~~g~~ 967 (1466)
.. .-+...|+|+++ ++++++|++++|.+
T Consensus 377 ~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~ 414 (463)
T PRK06370 377 PMTRVGRAVEKGETQGFMKVVVDADTDRILGATILGVH 414 (463)
T ss_pred ecCcchhHHhcCCCCEEEEEEEECCCCEEEEEEEECCC
Confidence 00 112467899988 47999999999987
|
|
| >PRK13748 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=351.71 Aligned_cols=377 Identities=22% Similarity=0.304 Sum_probs=264.1
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCC-Cccchh---------------c--cc-------Ccc
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR-VKLSKQ---------------L--DI-------KAD 96 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~~-~~~~~~---------------~--~~-------~~~ 96 (1466)
..+||+||||||||++||..|++.|.++.|++.+.-...-..+ +..++. + .. ...
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 176 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDRS 176 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCcceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCHH
Confidence 3699999999999999999999999999887754210000000 000000 0 00 011
Q ss_pred cccc------------cChhhhhcC-CeEEEeCceEEEeccccccEEEecCCc--EEecCEEEEccCCCCCCCCCCCCCC
Q psy2951 97 SILL------------RTEEFYKDN-DIHVIKGKKIISDSELNEKKIKLQDGT--SIDFTKIYLATGSSPRTISQADGVN 161 (1466)
Q Consensus 97 ~~~~------------~~~~~~~~~-~v~~~~~~~v~~~~~~~~~~v~~~~~~--~~~~d~lviAtG~~~~~~~~~~~~~ 161 (1466)
.+.. .+...+++. +++++.+...+. +.....+.+.++. ++.||+||||||++|..++ +++.+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~--~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~-i~g~~ 253 (561)
T PRK13748 177 RLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFK--DDQTLIVRLNDGGERVVAFDRCLIATGASPAVPP-IPGLK 253 (561)
T ss_pred HHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEe--cCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCC-CCCCC
Confidence 1111 122334444 799999876654 3444555555553 6999999999999997554 55554
Q ss_pred cEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEE
Q psy2951 162 KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKF 241 (1466)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i 241 (1466)
...++.+ .+..... ..+++++|||+|++|+|+|..|+++|.+|+++++.. .+ +.+++++.+.+.+.|++.||++
T Consensus 254 ~~~~~~~-~~~~~~~---~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~-~l-~~~d~~~~~~l~~~l~~~gI~i 327 (561)
T PRK13748 254 ETPYWTS-TEALVSD---TIPERLAVIGSSVVALELAQAFARLGSKVTILARST-LF-FREDPAIGEAVTAAFRAEGIEV 327 (561)
T ss_pred ccceEcc-HHHhhcc---cCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc-cc-cccCHHHHHHHHHHHHHCCCEE
Confidence 3223322 2222211 235799999999999999999999999999999854 33 3478999999999999999999
Q ss_pred EcCceEEEEEecCCCCeEEEEcCCCcEEeccEEEEeeccccCccc--cccCCceecCCccEEECCCCCcCCCCEEEeccc
Q psy2951 242 VMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 319 (1466)
Q Consensus 242 ~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD~ 319 (1466)
++++.+++++.++ +. ..+.++++ ++++|.|++|+|++||+.+ ++..|++++++|+|.||+++||+.|||||+|||
T Consensus 328 ~~~~~v~~i~~~~-~~-~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~~~IyA~GD~ 404 (561)
T PRK13748 328 LEHTQASQVAHVD-GE-FVLTTGHG-ELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRTSVPHIYAAGDC 404 (561)
T ss_pred EcCCEEEEEEecC-CE-EEEEecCC-eEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCcccCCCCEEEeeec
Confidence 9999999997643 22 23444444 6999999999999999986 467899999899999999999999999999999
Q ss_pred ccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCCCC--CCCCCcccccccceeeEEEEeecC------Cc----eEEE
Q psy2951 320 AYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS--LSTIPFFWTMLFGVGFRFAGYAAG------HT----QVDI 387 (1466)
Q Consensus 320 ~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~--~~~~p~~~s~~~~~~~~~~G~~~~------~~----~~~~ 387 (1466)
+..+. ....|..||+.++.||++.... +..+|+ ....+..+..+|.... .+ .+.+
T Consensus 405 ~~~~~-----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~--~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~ 471 (561)
T PRK13748 405 TDQPQ-----------FVYVAAAAGTRAAINMTGGDAALDLTAMPA--VVFTDPQVATVGYSEAEAHHDGIETDSRTLTL 471 (561)
T ss_pred CCCcc-----------chhHHHHHHHHHHHHHcCCCcccCCCCCCe--EEEccCCceeeeCCHHHHHHcCCCeEEEEEec
Confidence 87653 3457899999999999976533 334442 1122233444454331 11 0111
Q ss_pred e------cccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 388 V------GDLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 388 ~------g~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
. ...+..+|.+++.+ +++|+|++++|. ++++..++ .+|+.+.+. ++++|||++|.+
T Consensus 472 ~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~-~ai~~~~t~~~l~~~~~~~Pt~~e~~ 542 (561)
T PRK13748 472 DNVPRALANFDTRGFIKLVIEEGSGRLIGVQAVAPEAGELIQTAA-LAIRNRMTVQELADQLFPYLTMVEGL 542 (561)
T ss_pred ccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHcCCCHHHHhcccccCCchHHHH
Confidence 1 01135789998886 589999999998 45666666 899988876 799999999988
|
|
| >PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=345.90 Aligned_cols=346 Identities=21% Similarity=0.288 Sum_probs=257.4
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCc----cchhc-----------------------ccC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK----LSKQL-----------------------DIK 646 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~----~~~~~-----------------------~~~ 646 (1466)
..+||+||||||||++||..|+++|++ |+++|+.+.+++.... .++.+ ..+
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~--v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKR--VAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRIT 81 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCE--EEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccC
Confidence 358999999999999999999999987 7888875433322111 11100 001
Q ss_pred ccccc-----------ccCHhHhhhCCcEEEEceEEEEeccccccEEEccCCC--EEecCEEEEcCCCCCCcCCCCCCCC
Q psy2951 647 ADSIL-----------LRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGT--SIDFTKIYLATGSSPRTISQADGVN 713 (1466)
Q Consensus 647 ~~~~~-----------~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~--~~~~d~lviAtG~~~~~~~~~~g~~ 713 (1466)
..++. ....+++++.+++++.++ +..+ +....++...++. ++.||+||||||++|+.|+++ +.+
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~-~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p~~~-~~~ 158 (461)
T PRK05249 82 FADLLARADHVINKQVEVRRGQYERNRVDLIQGR-ARFV-DPHTVEVECPDGEVETLTADKIVIATGSRPYRPPDV-DFD 158 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE-EEEe-cCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCC-CCC
Confidence 11111 112334567799999998 6666 6666666666664 799999999999999999877 554
Q ss_pred --cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCc
Q psy2951 714 --KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGV 791 (1466)
Q Consensus 714 --~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv 791 (1466)
.++ +.++...+ ...+++++|||+|++|+|+|..|++.|.+|+++++.++++ +.+++++.+.+.+.++++||
T Consensus 159 ~~~v~---~~~~~~~~---~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-~~~d~~~~~~l~~~l~~~gI 231 (461)
T PRK05249 159 HPRIY---DSDSILSL---DHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL-SFLDDEISDALSYHLRDSGV 231 (461)
T ss_pred CCeEE---cHHHhhch---hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC-CcCCHHHHHHHHHHHHHcCC
Confidence 233 33333333 2348999999999999999999999999999999998876 46899999999999999999
Q ss_pred EEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCccc--cccCCceeeCCCcEEeCCCCCCCCCCeEEec
Q psy2951 792 KFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGG 869 (1466)
Q Consensus 792 ~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t~~~~iya~G 869 (1466)
++++++++++++..++ . ..+.+.+|+++++|.|++|+|++|++++ ++..+++++++|++.||+++||+.|+|||+|
T Consensus 232 ~v~~~~~v~~i~~~~~-~-~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyAiG 309 (461)
T PRK05249 232 TIRHNEEVEKVEGGDD-G-VIVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQTAVPHIYAVG 309 (461)
T ss_pred EEEECCEEEEEEEeCC-e-EEEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCcccCCCCEEEee
Confidence 9999999999984332 2 3456677889999999999999999885 5778999999999999999999999999999
Q ss_pred cccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCCc--CcccCeeeeeecC-ceeEEeeccCC------CCceeEe
Q psy2951 870 DIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS--LSTIPFFWTMLFG-VGFRFAGYAAG------HTQVDIV 940 (1466)
Q Consensus 870 D~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~~--~~~~~~~~~~~~~-~~~~~~g~~~~------~~~~~~~ 940 (1466)
||+..+. .+..|..||+.||.+|++.... ++.+|.. .|. ..+..+|+++. .+-....
T Consensus 310 D~~~~~~-----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~---i~~~p~ia~vG~te~~a~~~g~~~~~~~ 375 (461)
T PRK05249 310 DVIGFPS-----------LASASMDQGRIAAQHAVGEATAHLIEDIPTG---IYTIPEISSVGKTEQELTAAKVPYEVGR 375 (461)
T ss_pred ecCCCcc-----------cHhHHHHHHHHHHHHHcCCCcccccCCCCeE---EECCCcceEecCCHHHHHHcCCCeEEEE
Confidence 9986544 3468999999999999976432 3455533 233 34667776642 1100000
Q ss_pred ----c------ccccceEEEEEe--cCCeEEEEEeecCc
Q psy2951 941 ----G------DLEALKFTAYYS--NADKVLAILTVGMD 967 (1466)
Q Consensus 941 ----~------~~~~~~~~~~~~--~~~~i~g~~~~g~~ 967 (1466)
. .-++..|.|+++ ++++++|++++|..
T Consensus 376 ~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~ 414 (461)
T PRK05249 376 ARFKELARAQIAGDNVGMLKILFHRETLEILGVHCFGER 414 (461)
T ss_pred EccccccceeecCCCCcEEEEEEECCCCEEEEEEEECCC
Confidence 0 113456899988 46899999999975
|
|
| >PLN02546 glutathione reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-34 Score=345.73 Aligned_cols=344 Identities=18% Similarity=0.262 Sum_probs=255.3
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCC---------CCCCCCCCc-----cchh----------------
Q psy2951 593 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE---------NFLPYDRVK-----LSKQ---------------- 642 (1466)
Q Consensus 593 ~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~---------~~~~~~~~~-----~~~~---------------- 642 (1466)
...+||+||||||||+.||..++++|.+ |.++|+. ..+++ .|. .++.
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~--V~liE~~~~~~~~~~~~~~GG-tC~n~GCiPsK~l~~aa~~~~~~~~~~~ 153 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGAS--AAVCELPFATISSDTLGGVGG-TCVLRGCVPKKLLVYASKYSHEFEESRG 153 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCe--EEEEeccccccccccCCCccC-cccCcchHHHHHHHHHHHHHHHHHhhhh
Confidence 3468999999999999999999999998 6777741 11110 000 0000
Q ss_pred cc--------cC-----------cccccccCHhHhhhCCcEEEEceEEEEeccccccEEEccCCCEEecCEEEEcCCCCC
Q psy2951 643 LD--------IK-----------ADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSP 703 (1466)
Q Consensus 643 ~~--------~~-----------~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~ 703 (1466)
++ .+ ...+...+...+++.||+++.++ ++.+ +.. ++.+ +|+++.||+||||||++|
T Consensus 154 ~g~~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~-a~~v-d~~--~V~v-~G~~~~~D~LVIATGs~p 228 (558)
T PLN02546 154 FGWKYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGR-GKIV-DPH--TVDV-DGKLYTARNILIAVGGRP 228 (558)
T ss_pred cCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEc-cCC--EEEE-CCEEEECCEEEEeCCCCC
Confidence 00 01 11112233345667899999988 6666 553 4554 577899999999999999
Q ss_pred CcCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHH
Q psy2951 704 RTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERIT 783 (1466)
Q Consensus 704 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~ 783 (1466)
..|++| |.+.++ +.+++..+ ...+++|+|||+|++|+|+|..|++.+.+|+++++.+.++ +.+++++...+.
T Consensus 229 ~~P~Ip-G~~~v~---~~~~~l~~---~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il-~~~d~~~~~~l~ 300 (558)
T PLN02546 229 FIPDIP-GIEHAI---DSDAALDL---PSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVL-RGFDEEVRDFVA 300 (558)
T ss_pred CCCCCC-Chhhcc---CHHHHHhc---cccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccc-cccCHHHHHHHH
Confidence 999999 876332 44444333 2358999999999999999999999999999999998776 578999999999
Q ss_pred HHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCccc--cccCCceeeCCCcEEeCCCCCCC
Q psy2951 784 KLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETN 861 (1466)
Q Consensus 784 ~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t~ 861 (1466)
+.|+++||+++++.++.+++..+++.+ .+.+++++.+.+|.|++++|++|++++ +++.|++++++|+|.||+++||+
T Consensus 301 ~~L~~~GV~i~~~~~v~~i~~~~~g~v-~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~Ts 379 (558)
T PLN02546 301 EQMSLRGIEFHTEESPQAIIKSADGSL-SLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRTS 379 (558)
T ss_pred HHHHHCCcEEEeCCEEEEEEEcCCCEE-EEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCceeC
Confidence 999999999999999999975434333 455556555569999999999999985 57889999989999999999999
Q ss_pred CCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCC---cCcccCeeeeeecCc-eeEEeeccCCCC--
Q psy2951 862 VPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT---SLSTIPFFWTMLFGV-GFRFAGYAAGHT-- 935 (1466)
Q Consensus 862 ~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~---~~~~~~~~~~~~~~~-~~~~~g~~~~~~-- 935 (1466)
+|+|||+|||+..+. .++.|..||+++|.||++... .+..+|. .+|.. .+..+|+++...
T Consensus 380 ~p~IYAaGDv~~~~~-----------l~~~A~~~g~~~a~~i~g~~~~~~~~~~vp~---~vft~Peia~VGlte~eA~~ 445 (558)
T PLN02546 380 VPSIWAVGDVTDRIN-----------LTPVALMEGGALAKTLFGNEPTKPDYRAVPS---AVFSQPPIGQVGLTEEQAIE 445 (558)
T ss_pred CCCEEEeeccCCCcc-----------cHHHHHHHHHHHHHHHcCCCCCcCCCCCCCE---EEeCCchHhhccCCHHHHHH
Confidence 999999999987543 347899999999999998543 2455663 35654 567777765211
Q ss_pred ---ce-eEec----------ccccceEEEEEe--cCCeEEEEEeecCc
Q psy2951 936 ---QV-DIVG----------DLEALKFTAYYS--NADKVLAILTVGMD 967 (1466)
Q Consensus 936 ---~~-~~~~----------~~~~~~~~~~~~--~~~~i~g~~~~g~~ 967 (1466)
+. .... ...+..|+|+++ ++++++|++++|.+
T Consensus 446 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~t~~ILGa~ivG~~ 493 (558)
T PLN02546 446 EYGDVDVFTANFRPLKATLSGLPDRVFMKLIVCAKTNKVLGVHMCGED 493 (558)
T ss_pred cCCCeEEEEEecccchhhhhCCCCcEEEEEEEECCCCEEEEEEEECCC
Confidence 11 0000 012356899988 57899999999986
|
|
| >PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=342.75 Aligned_cols=346 Identities=18% Similarity=0.276 Sum_probs=255.3
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCc----c-chhcc------cCcc-------cccccC--
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK----L-SKQLD------IKAD-------SILLRT-- 654 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~----~-~~~~~------~~~~-------~~~~~~-- 654 (1466)
.+||+||||||||++||..|+++|++ |+++|+.+...+..+. . .+.+. .+.. .+...+
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~--V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWR--VALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRN 80 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCe--EEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999988 8888876432111111 0 11100 0110 111111
Q ss_pred --HhHh-hhCCcEEEEceEEEEeccccccEEEccCCC-EEecCEEEEcCCCCCCcCCCCCCCC---cEEEecCHHHHHhh
Q psy2951 655 --EEFY-KDNDIHVIKGKKIISDSELNEKKIKLQDGT-SIDFTKIYLATGSSPRTISQADGVN---KVFYLRTVEDANNI 727 (1466)
Q Consensus 655 --~~~~-~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~-~~~~d~lviAtG~~~~~~~~~~g~~---~~~~~~~~~~~~~~ 727 (1466)
...+ +..+++++.++ +..+ +.....+.+.++. ++.||+||||||++|..|++| |.+ +++ +..+...
T Consensus 81 ~~~~~~~~~~gv~~~~g~-~~~i-~~~~~~v~~~~g~~~~~~d~lviATGs~p~~p~i~-G~~~~~~v~---~~~~~~~- 153 (441)
T PRK08010 81 KNFHNLADMPNIDVIDGQ-AEFI-NNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPIP-GITTTPGVY---DSTGLLN- 153 (441)
T ss_pred hHHHHHhhcCCcEEEEEE-EEEe-cCCEEEEEeCCCeEEEEeCEEEEcCCCcCCCCCCC-CccCCCCEE---ChhHhhc-
Confidence 1122 23499999987 7777 7666777766664 699999999999999999999 864 333 2333322
Q ss_pred cccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCC
Q psy2951 728 APHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEK 807 (1466)
Q Consensus 728 ~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~ 807 (1466)
....+++++|||+|++|+|+|..|++.|.+|+++++.+.++ +.+++++.+.+.+.|+++||++++++++++++.. +
T Consensus 154 --~~~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-~~~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~-~ 229 (441)
T PRK08010 154 --LKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL-PREDRDIADNIATILRDQGVDIILNAHVERISHH-E 229 (441)
T ss_pred --ccccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC-CCcCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-C
Confidence 22357899999999999999999999999999999988766 4568899999999999999999999999999843 3
Q ss_pred CceEEEECCCCcEEecCEEEEccccccCccc--cccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceee
Q psy2951 808 NDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNAS 885 (1466)
Q Consensus 808 ~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~ 885 (1466)
+.+ .+.++++ ++++|.|++|+|++|++++ ++..|++++++|+|.||+++||+.|+|||+|||+..+..
T Consensus 230 ~~v-~v~~~~g-~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~~-------- 299 (441)
T PRK08010 230 NQV-QVHSEHA-QLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHTTADNIWAMGDVTGGLQF-------- 299 (441)
T ss_pred CEE-EEEEcCC-eEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCccc--------
Confidence 322 4444444 6899999999999999886 467789999899999999999999999999999986543
Q ss_pred eccHHHHHHHHHHHHHHhccC-CC---cCcccCeeeeeecCceeEEeeccCC------CCceeEec----------cccc
Q psy2951 886 IGHYQLAQYHGRIAALNMVEK-KT---SLSTIPFFWTMLFGVGFRFAGYAAG------HTQVDIVG----------DLEA 945 (1466)
Q Consensus 886 ~~~~~~A~~~g~~aA~~i~~~-~~---~~~~~~~~~~~~~~~~~~~~g~~~~------~~~~~~~~----------~~~~ 945 (1466)
.+.|..||++++.||+++ .. .+..+| +..++++.+..+|+++. ++-..... ..+.
T Consensus 300 ---~~~a~~~~~~~~~~~~g~~~~~~~~~~~~p--~~~~~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~ 374 (441)
T PRK08010 300 ---TYISLDDYRIVRDELLGEGKRSTDDRKNVP--YSVFMTPPLSRVGMTEEQARESGADIQVVTLPVAAIPRARVMNDT 374 (441)
T ss_pred ---hhHHHHHHHHHHHHHcCCCCcccCccCCCC--EEEECCCCceeeeCCHHHHHHcCCCeEEEEEecCcChhhhhcCCC
Confidence 368999999999999985 22 223455 33366777888888752 11111110 1123
Q ss_pred ceEEEEEe--cCCeEEEEEeecCch
Q psy2951 946 LKFTAYYS--NADKVLAILTVGMDP 968 (1466)
Q Consensus 946 ~~~~~~~~--~~~~i~g~~~~g~~~ 968 (1466)
.+|.|+++ ++++++|++++|.+.
T Consensus 375 ~g~~kli~d~~~~~ilG~~~~g~~a 399 (441)
T PRK08010 375 RGVLKAIVDNKTQRILGASLLCVDS 399 (441)
T ss_pred ceEEEEEEECCCCEEEEEEEECCCH
Confidence 56888888 479999999999763
|
|
| >TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-34 Score=344.17 Aligned_cols=372 Identities=20% Similarity=0.267 Sum_probs=262.8
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCC---C---CCCC---C-CCccchh----------------cccCcc
Q psy2951 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE---N---FLPY---D-RVKLSKQ----------------LDIKAD 96 (1466)
Q Consensus 43 ~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~---~---~~~~---~-~~~~~~~----------------~~~~~~ 96 (1466)
++|++||||||||+.||..+++.|.++.+++.... . .... . -+..++. +.....
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~ 81 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE 81 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence 58999999999999999999999999999874210 0 0000 0 0001111 011100
Q ss_pred -------------------cccccChhhhhcCCeEEEeCceEEEeccccccEEEec--CC--cEEecCEEEEccCCCCCC
Q psy2951 97 -------------------SILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQ--DG--TSIDFTKIYLATGSSPRT 153 (1466)
Q Consensus 97 -------------------~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~--~~--~~~~~d~lviAtG~~~~~ 153 (1466)
.+......+++..+++++.|...+.+. .++.+. ++ ..+.||+||||||++|+.
T Consensus 82 ~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~----~~v~v~~~~g~~~~~~~d~lVIATGs~p~~ 157 (484)
T TIGR01438 82 ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDK----HRIKATNKKGKEKIYSAERFLIATGERPRY 157 (484)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCC----CEEEEeccCCCceEEEeCEEEEecCCCCCC
Confidence 011123345677899999999876532 345443 33 369999999999999976
Q ss_pred CCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHH
Q psy2951 154 ISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKL 233 (1466)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~ 233 (1466)
++ +++.+... .+.++...+. ...++++|||||++|+|+|..|+++|.+||++++. .++ +.+++++.+.+.+.
T Consensus 158 p~-ipG~~~~~--~~~~~~~~~~---~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l-~~~d~~~~~~l~~~ 229 (484)
T TIGR01438 158 PG-IPGAKELC--ITSDDLFSLP---YCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILL-RGFDQDCANKVGEH 229 (484)
T ss_pred CC-CCCcccee--ecHHHhhccc---ccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-ccc-cccCHHHHHHHHHH
Confidence 54 55543221 1334444332 23468999999999999999999999999999974 443 67899999999999
Q ss_pred HHhCCcEEEcCceEEEEEecCCCCeEEEEcCCC---cEEeccEEEEeeccccCccc--cccCCceecC-CccEEECCCCC
Q psy2951 234 FESKGVKFVMKANVSSFEKNEKNDVTAANLDNG---TTIPADLVIVGIGTVLNTNY--LDGKGVELNG-QKAVVVNEYLE 307 (1466)
Q Consensus 234 l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~~~g---~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~-~g~i~vd~~~~ 307 (1466)
|+++||++++++.+.+++..++ . ..+.+.++ +++++|.||+|+|++||+++ ++..|+++++ +|+|.||+++|
T Consensus 230 L~~~gV~i~~~~~v~~v~~~~~-~-~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~~ 307 (484)
T TIGR01438 230 MEEHGVKFKRQFVPIKVEQIEA-K-VKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEEQ 307 (484)
T ss_pred HHHcCCEEEeCceEEEEEEcCC-e-EEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCCCcc
Confidence 9999999999999999876432 2 23444444 47999999999999999987 4678888875 48999999999
Q ss_pred cCCCCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCC---CCCCCCC---cccccccceeeEEEEeecC
Q psy2951 308 TNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK---TSLSTIP---FFWTMLFGVGFRFAGYAAG 381 (1466)
Q Consensus 308 t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~---~~~~~~p---~~~s~~~~~~~~~~G~~~~ 381 (1466)
|+.|+|||+|||+... ...+..|..||+.+++||++.. ..+..+| |+.+....+ |.+..
T Consensus 308 Ts~p~IyA~GDv~~~~----------~~l~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~i~~~p~ia~v-----Glte~ 372 (484)
T TIGR01438 308 TNVPYIYAVGDILEDK----------QELTPVAIQAGRLLAQRLFSGSTVICDYENVPTTVFTPLEYGAC-----GLSEE 372 (484)
T ss_pred cCCCCEEEEEEecCCC----------ccchHHHHHHHHHHHHHHhcCCCcccccccCCeEEeCCCceeee-----cCCHH
Confidence 9999999999998531 1345679999999999998643 2345555 334443333 33221
Q ss_pred -------CceEE-----Ee--------cccCCCeEEEEEE-c--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc----
Q psy2951 382 -------HTQVD-----IV--------GDLEALKFTAYYS-N--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS---- 432 (1466)
Q Consensus 382 -------~~~~~-----~~--------g~~~~~~~~~~~~-~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~---- 432 (1466)
...+. +. ++....+|.+++. + +++|+|++++|. +++++.++ .+|+++.+.
T Consensus 373 ~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~t~~ILG~~ivg~~a~e~I~~~a-~ai~~~~t~~dl~ 451 (484)
T TIGR01438 373 KAVEKFGEENIEVFHSYFWPLEWTIPSRDNSNKCYAKAVCNRKENERVVGFHVVGPNAGEVTQGFA-AALRCGLTKKDLD 451 (484)
T ss_pred HHHHhcCCCcEEEEEeecchhhhHhhCCCccCCcEEEEEEecCCCCeEEEEEEECCCHHHHHHHHH-HHHHcCCCHHHHh
Confidence 00111 00 0111457888775 3 589999999998 55667777 899998876
Q ss_pred -ccccCcccchhh
Q psy2951 433 -LPHSHRCLGVVL 444 (1466)
Q Consensus 433 -~~~~~p~~~e~~ 444 (1466)
+++.|||++|.+
T Consensus 452 ~~~~~hPt~sE~~ 464 (484)
T TIGR01438 452 NTIGIHPVCAEVF 464 (484)
T ss_pred hhhcCCCChHHHH
Confidence 799999999988
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. |
| >PTZ00052 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=342.25 Aligned_cols=372 Identities=19% Similarity=0.288 Sum_probs=262.8
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcC----CC--CCCC---CC-Cccch-----------------hcc---
Q psy2951 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITD----EN--FLPY---DR-VKLSK-----------------QLD--- 92 (1466)
Q Consensus 43 ~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~----~~--~~~~---~~-~~~~~-----------------~~~--- 92 (1466)
++||+||||||||++||..|+++|.+|.|++..+ .. .+.. .. +..++ .+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~~ 84 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWKT 84 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCCC
Confidence 5899999999999999999999999999987421 10 0000 00 00010 000
Q ss_pred ---cCcccccccC-----------hhhhhcCCeEEEeCceEEEeccccccEEEecC---CcEEecCEEEEccCCCCCCCC
Q psy2951 93 ---IKADSILLRT-----------EEFYKDNDIHVIKGKKIISDSELNEKKIKLQD---GTSIDFTKIYLATGSSPRTIS 155 (1466)
Q Consensus 93 ---~~~~~~~~~~-----------~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~---~~~~~~d~lviAtG~~~~~~~ 155 (1466)
.+..++..+. ...++..+|+++.+...+. +.+++.+.+ +..++||+||||||++|+.++
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~----~~~~v~v~~~~~~~~i~~d~lIIATGs~p~~p~ 160 (499)
T PTZ00052 85 SSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLK----DEHTVSYGDNSQEETITAKYILIATGGRPSIPE 160 (499)
T ss_pred CCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEc----cCCEEEEeeCCCceEEECCEEEEecCCCCCCCC
Confidence 1111221111 2223346788888876543 235565532 347999999999999998654
Q ss_pred CCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHH
Q psy2951 156 QADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFE 235 (1466)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~ 235 (1466)
.+++.... . .+.++...+. ..+++++|||+|++|+|+|..|+++|.+||++++. .++ +.+++++.+.+.+.|+
T Consensus 161 ~i~G~~~~-~-~~~~~~~~~~---~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l-~~~d~~~~~~l~~~l~ 233 (499)
T PTZ00052 161 DVPGAKEY-S-ITSDDIFSLS---KDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS-IPL-RGFDRQCSEKVVEYMK 233 (499)
T ss_pred CCCCccce-e-ecHHHHhhhh---cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-ccc-ccCCHHHHHHHHHHHH
Confidence 46654432 1 2444444433 23569999999999999999999999999999874 444 6788999999999999
Q ss_pred hCCcEEEcCceEEEEEecCCCCeEEEEcCCCcEEeccEEEEeeccccCcccc--ccCCceecCCccEEECCCCCcCCCCE
Q psy2951 236 SKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGV 313 (1466)
Q Consensus 236 ~~GV~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~l--~~~gl~~~~~g~i~vd~~~~t~~~~i 313 (1466)
++||++++++.+++++..+ +. ..+.+.+|+++++|.|++|+|++||++++ +..+++++++|++.+++. +|+.|+|
T Consensus 234 ~~GV~i~~~~~v~~v~~~~-~~-~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~-~Ts~p~I 310 (499)
T PTZ00052 234 EQGTLFLEGVVPINIEKMD-DK-IKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND-CTNIPNI 310 (499)
T ss_pred HcCCEEEcCCeEEEEEEcC-Ce-EEEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC-cCCCCCE
Confidence 9999999999999997643 22 33566778889999999999999999975 578899998898777777 9999999
Q ss_pred EEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCCC---CCCCCCc---ccccccceeeEEEEeecC------
Q psy2951 314 YAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT---SLSTIPF---FWTMLFGVGFRFAGYAAG------ 381 (1466)
Q Consensus 314 ya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~---~~~~~p~---~~s~~~~~~~~~~G~~~~------ 381 (1466)
||+|||+... +..+..|+.||+.++.||++... ++..+|+ +.+....+ |.+..
T Consensus 311 yAiGDv~~~~----------~~l~~~A~~~g~~aa~ni~g~~~~~~~~~~~p~~ift~p~ia~v-----Glte~~A~~~~ 375 (499)
T PTZ00052 311 FAVGDVVEGR----------PELTPVAIKAGILLARRLFKQSNEFIDYTFIPTTIFTPIEYGAC-----GYSSEAAIAKY 375 (499)
T ss_pred EEEEEecCCC----------cccHHHHHHHHHHHHHHHhCCCCCcCccccCCeEEecCCcceee-----cCCHHHHHHhc
Confidence 9999998521 23567899999999999987532 3445553 33333333 33221
Q ss_pred -CceE-----EE-------ecc--------------cCCCeEEEEEEc---CCEEEEEEEECC--CHHHHHHHHHHhcCC
Q psy2951 382 -HTQV-----DI-------VGD--------------LEALKFTAYYSN---ADKVLAILTVGM--DPLAAQFAEQVLEFP 429 (1466)
Q Consensus 382 -~~~~-----~~-------~g~--------------~~~~~~~~~~~~---~~~i~g~~~~~~--~~~~~~~~~~~i~~~ 429 (1466)
...+ .+ ... .+..+|.+++.+ +++|+|++++|. +++++.++ .+|+.+
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~~IlG~~ivg~~A~elI~~~~-~ai~~~ 454 (499)
T PTZ00052 376 GEDDIEEYLQEFNTLEIAAVHREKHERARKDEYDFDVSSNCLAKLVCVKSEDNKVVGFHFVGPNAGEITQGFS-LALKLG 454 (499)
T ss_pred CCCCEEEEEeecccchhhccccccccccccccccccccCCceEEEEEecCCCCEEEEEEEECCCHHHHHHHHH-HHHHCC
Confidence 0000 00 000 025789988775 489999999998 55677777 999988
Q ss_pred Ccc-----ccccCcccchhh
Q psy2951 430 YSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 430 ~~~-----~~~~~p~~~e~~ 444 (1466)
.+. +++.|||++|.+
T Consensus 455 ~t~~~l~~~~~~hPt~sE~~ 474 (499)
T PTZ00052 455 AKKSDFDSMIGIHPTDAEVF 474 (499)
T ss_pred CCHHHHhcccccCCCCchhh
Confidence 775 799999999988
|
|
| >PTZ00058 glutathione reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=340.39 Aligned_cols=358 Identities=18% Similarity=0.243 Sum_probs=252.5
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC---------CCCCCCCc----cc------hhcc------cCc
Q psy2951 593 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN---------FLPYDRVK----LS------KQLD------IKA 647 (1466)
Q Consensus 593 ~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~---------~~~~~~~~----~~------~~~~------~~~ 647 (1466)
...+||+||||||||++||..+++.|.+ |.++|++. |+|-.... .. ..++ .+.
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~--ValIEk~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~ 123 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKAK--VALVEKDYLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNL 123 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCe--EEEEecccccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCH
Confidence 3568999999999999999999999988 77787752 11110000 00 0000 011
Q ss_pred ccc-----------cccCHhHhhhCCcEEEEceEEEEecccccc--------------------EE------EccCCCEE
Q psy2951 648 DSI-----------LLRTEEFYKDNDIHVIKGKKIISDSELNEK--------------------KI------KLQDGTSI 690 (1466)
Q Consensus 648 ~~~-----------~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~--------------------~v------~~~~~~~~ 690 (1466)
..+ .....+.+++.||+++.++ .... +...- ++ ...++.++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~-a~f~-~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~i 201 (561)
T PTZ00058 124 PLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGK-GSLL-SENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVI 201 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEE-EEEe-cCCEEEeeccccccccccccccccceeeeccceecCCCcEE
Confidence 111 1112234566799999998 4333 32211 12 12456789
Q ss_pred ecCEEEEcCCCCCCcCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccC
Q psy2951 691 DFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF 770 (1466)
Q Consensus 691 ~~d~lviAtG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~ 770 (1466)
+||+||||||++|..|+++ |.+.++ +.++...+. .+++|+|||+|++|+|+|..|++.|.+||++++.++++
T Consensus 202 ~ad~lVIATGS~P~~P~Ip-G~~~v~---ts~~~~~l~----~pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il 273 (561)
T PTZ00058 202 EGKNILIAVGNKPIFPDVK-GKEFTI---SSDDFFKIK----EAKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL 273 (561)
T ss_pred ECCEEEEecCCCCCCCCCC-CceeEE---EHHHHhhcc----CCCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc
Confidence 9999999999999999999 865332 334443322 38999999999999999999999999999999998776
Q ss_pred ccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCcccccc--CCceeeC
Q psy2951 771 QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDG--KGVELNG 848 (1466)
Q Consensus 771 ~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~--~gl~~~~ 848 (1466)
+.+++++.+.+.+.|+++||+++++..+.+++..+++.+.....++++++++|.|++|+|++|+++++.. .++. ++
T Consensus 274 -~~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~-~~ 351 (561)
T PTZ00058 274 -RKFDETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIK-TP 351 (561)
T ss_pred -ccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCccccCcccccee-cC
Confidence 5789999999999999999999999999999854333343222334457999999999999999987643 3343 45
Q ss_pred CCcEEeCCCCCCCCCCeEEeccccccCCc----------------------ccCCcee-eeccHHHHHHHHHHHHHHhcc
Q psy2951 849 QKAVVVNEYLETNVPGVYAGGDIAYAPLH----------------------SFYNKNA-SIGHYQLAQYHGRIAALNMVE 905 (1466)
Q Consensus 849 ~G~i~vd~~~~t~~~~iya~GD~~~~~~~----------------------~~~~~~~-~~~~~~~A~~~g~~aA~~i~~ 905 (1466)
+|+|.||+++||+.|+|||+|||+..+.. ..++.+. .+++++.|..||+++|.||++
T Consensus 352 ~G~I~VDe~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g 431 (561)
T PTZ00058 352 KGYIKVDDNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFG 431 (561)
T ss_pred CCeEEECcCCccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHhC
Confidence 79999999999999999999999984321 1123333 367889999999999999997
Q ss_pred CCC---cCcccCeeeeeecC-ceeEEeeccCC-------CCceeEe--c-------------ccccceEEEEEe--cCCe
Q psy2951 906 KKT---SLSTIPFFWTMLFG-VGFRFAGYAAG-------HTQVDIV--G-------------DLEALKFTAYYS--NADK 957 (1466)
Q Consensus 906 ~~~---~~~~~~~~~~~~~~-~~~~~~g~~~~-------~~~~~~~--~-------------~~~~~~~~~~~~--~~~~ 957 (1466)
... .++.+|. .+|. +.+..+|+++. ....... . ..++..+.|+++ ++++
T Consensus 432 ~~~~~~~~~~ip~---~vft~peiA~vGlte~eA~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~t~~ 508 (561)
T PTZ00058 432 PFSRTTNYKLIPS---VIFSHPPIGTIGLSEQEAIDIYGKENVKIYESRFTNLFFSVYDMDPAQKEKTYLKLVCVGKEEL 508 (561)
T ss_pred CCCcccCCCCCCe---EEeCCchheeeeCCHHHHHHhcCCCcEEEEEeecchhhhhhhcccccCCCCeEEEEEEECCCCE
Confidence 532 2344553 3455 46778887652 1111110 0 012457888888 4789
Q ss_pred EEEEEeecCc
Q psy2951 958 VLAILTVGMD 967 (1466)
Q Consensus 958 i~g~~~~g~~ 967 (1466)
++|++++|.+
T Consensus 509 ILG~~ivG~~ 518 (561)
T PTZ00058 509 IKGLHIVGLN 518 (561)
T ss_pred EEEEEEECCC
Confidence 9999999966
|
|
| >PTZ00153 lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=343.43 Aligned_cols=373 Identities=18% Similarity=0.224 Sum_probs=260.2
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCC---------CCCC-------------C------CCccc------
Q psy2951 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN---------FLPY-------------D------RVKLS------ 88 (1466)
Q Consensus 43 ~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~---------~~~~-------------~------~~~~~------ 88 (1466)
+|||+|||+||||+.||..++++|.+|.|++.++.. ..|- . ...+.
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~~~ 195 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAFKN 195 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeeccccc
Confidence 689999999999999999999999999998754211 1110 0 00000
Q ss_pred -------------hhcccCccc-----------ccccChhhhhcC-------CeEEEeCceEEEeccccccEEEec-CCc
Q psy2951 89 -------------KQLDIKADS-----------ILLRTEEFYKDN-------DIHVIKGKKIISDSELNEKKIKLQ-DGT 136 (1466)
Q Consensus 89 -------------~~~~~~~~~-----------~~~~~~~~~~~~-------~v~~~~~~~v~~~~~~~~~~v~~~-~~~ 136 (1466)
.....+... +...+...+++. +++++.+...+... .++.+. ++.
T Consensus 196 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~----~~v~v~~~g~ 271 (659)
T PTZ00153 196 GKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDK----NTIKSEKSGK 271 (659)
T ss_pred cccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecC----CeEEEccCCE
Confidence 000001011 111122334444 47888888766532 445443 566
Q ss_pred EEecCEEEEccCCCCCCCCCCCCC-CcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecC
Q psy2951 137 SIDFTKIYLATGSSPRTISQADGV-NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGA 215 (1466)
Q Consensus 137 ~~~~d~lviAtG~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 215 (1466)
++.||+||||||++|..++..+.. ..++ +.+++..+.. .+++++|||+|++|+|+|..++++|.+||++++.+
T Consensus 272 ~i~ad~lIIATGS~P~~P~~~~~~~~~V~---ts~d~~~l~~---lpk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~ 345 (659)
T PTZ00153 272 EFKVKNIIIATGSTPNIPDNIEVDQKSVF---TSDTAVKLEG---LQNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSP 345 (659)
T ss_pred EEECCEEEEcCCCCCCCCCCCCCCCCcEE---ehHHhhhhhh---cCCceEEECCCHHHHHHHHHHHhCCCeEEEEeccC
Confidence 899999999999999865433211 2233 3455555432 25799999999999999999999999999999988
Q ss_pred cccccccCHHHHHHHHHHH-HhCCcEEEcCceEEEEEecCCCCeEEEEcC-------CC--------cEEeccEEEEeec
Q psy2951 216 VPFQESLGKEVGERITKLF-ESKGVKFVMKANVSSFEKNEKNDVTAANLD-------NG--------TTIPADLVIVGIG 279 (1466)
Q Consensus 216 ~~~~~~~~~~~~~~l~~~l-~~~GV~i~~~~~v~~i~~~~~~~~~~v~~~-------~g--------~~i~~D~Vi~a~G 279 (1466)
.+++ .+++++.+.+.+.+ +++||++++++.|++++.++++....+.+. ++ +++++|.||+|+|
T Consensus 346 ~ll~-~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtG 424 (659)
T PTZ00153 346 QLLP-LLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATG 424 (659)
T ss_pred cccc-cCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEEC
Confidence 7764 68899999888875 679999999999999986543222223221 11 3799999999999
Q ss_pred cccCcccc--ccCCceecCCccEEECCCCCcC------CCCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHh
Q psy2951 280 TVLNTNYL--DGKGVELNGQKAVVVNEYLETN------VPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNM 351 (1466)
Q Consensus 280 ~~p~~~~l--~~~gl~~~~~g~i~vd~~~~t~------~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i 351 (1466)
++||++++ +..+++++. |+|.||++|||+ +|+|||+|||++.+ ..+..|..||+.+++||
T Consensus 425 r~Pnt~~L~l~~~gi~~~~-G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~-----------~La~~A~~qg~~aa~ni 492 (659)
T PTZ00153 425 RKPNTNNLGLDKLKIQMKR-GFVSVDEHLRVLREDQEVYDNIFCIGDANGKQ-----------MLAHTASHQALKVVDWI 492 (659)
T ss_pred cccCCccCCchhcCCcccC-CEEeECCCCCcCCCCCCCCCCEEEEEecCCCc-----------cCHHHHHHHHHHHHHHH
Confidence 99999874 677787764 899999999997 69999999998654 24568999999999999
Q ss_pred cCCC-------------C--CCCCCC---cccccccceeeEEEEeecCC-------ce-----EEEe--------cc---
Q psy2951 352 VEKK-------------T--SLSTIP---FFWTMLFGVGFRFAGYAAGH-------TQ-----VDIV--------GD--- 390 (1466)
Q Consensus 352 ~~~~-------------~--~~~~~p---~~~s~~~~~~~~~~G~~~~~-------~~-----~~~~--------g~--- 390 (1466)
.+.. . .+..+| |+.+....+|+ +... .+ ..+. ++
T Consensus 493 ~g~~~~~~~~~~~~~~~~~~~~~~iP~~ift~PeiA~VGl-----TE~eA~~~g~~~~v~v~~~~~~~~~ra~~~~~~~~ 567 (659)
T PTZ00153 493 EGKGKENVNINVENWASKPIIYKNIPSVCYTTPELAFIGL-----TEKEAKELYPPDNVGVEISFYKANSKVLCENNISF 567 (659)
T ss_pred cCCCccccccccccccccccccCcCCEEEECcCceEEeeC-----CHHHHHhcCCCcceEEEEEEecccchhhhcccccc
Confidence 8752 1 234555 33444444443 2210 00 0111 00
Q ss_pred -----------------cCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 391 -----------------LEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 391 -----------------~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
.+..+|.+++.+ +++|+|++++|. +++++.++ .+|+.+.+. ++++|||++|.+
T Consensus 568 p~~~~~~~y~~g~~~~~~~~~G~vKli~d~~t~rILGa~ivG~~A~elI~~~a-~aI~~~~tv~dl~~~~~~hPT~sE~~ 646 (659)
T PTZ00153 568 PNNSKNNSYNKGKYNTVDNTEGMVKIVYLKDTKEILGMFIVGSYASILIHEGV-LAINLKLSVKDLAHMVHSHPTISEVL 646 (659)
T ss_pred ccccccccccccccccccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhhCcCCCCChHHHH
Confidence 015789988885 589999999998 55666666 999999876 799999999988
|
|
| >PRK06416 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=341.94 Aligned_cols=347 Identities=26% Similarity=0.327 Sum_probs=255.2
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCC----Cccchh----------------cc-------cC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR----VKLSKQ----------------LD-------IK 646 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~----~~~~~~----------------~~-------~~ 646 (1466)
..+||+||||||||++||..|+++|++ |+++|++. +++.. +..++. ++ .+
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~--V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 79 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLK--VAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGID 79 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCc--EEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccC
Confidence 458999999999999999999999998 78888764 22211 000000 00 01
Q ss_pred ccccccc-----------CHhHhhhCCcEEEEceEEEEeccccccEEEccC-CCEEecCEEEEcCCCCCCcCCCCCCCC-
Q psy2951 647 ADSILLR-----------TEEFYKDNDIHVIKGKKIISDSELNEKKIKLQD-GTSIDFTKIYLATGSSPRTISQADGVN- 713 (1466)
Q Consensus 647 ~~~~~~~-----------~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~-~~~~~~d~lviAtG~~~~~~~~~~g~~- 713 (1466)
..++..+ +...+++.||+++.++ +..+ +....++...+ +.++.||+||||||++|..|+ |.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~~-~~~~~~v~~~~~~~~~~~d~lViAtGs~p~~~p---g~~~ 154 (462)
T PRK06416 80 FKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGE-AKLV-DPNTVRVMTEDGEQTYTAKNIILATGSRPRELP---GIEI 154 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEc-cCCEEEEecCCCcEEEEeCEEEEeCCCCCCCCC---CCCC
Confidence 1112222 2334567899999998 6666 66666665433 368999999999999997653 433
Q ss_pred -cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcE
Q psy2951 714 -KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVK 792 (1466)
Q Consensus 714 -~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~ 792 (1466)
+. ...+.+++..+. ..+++++|||+|++|+|+|..|++.|.+||++++.++++ +.+++++.+.+.+.|+++||+
T Consensus 155 ~~~-~v~~~~~~~~~~---~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-~~~~~~~~~~l~~~l~~~gV~ 229 (462)
T PRK06416 155 DGR-VIWTSDEALNLD---EVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL-PGEDKEISKLAERALKKRGIK 229 (462)
T ss_pred CCC-eEEcchHhhCcc---ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC-CcCCHHHHHHHHHHHHHcCCE
Confidence 22 222445544333 247999999999999999999999999999999998876 468899999999999999999
Q ss_pred EEccceEEEEEecCCCceEEEECCCC---cEEecCEEEEccccccCcccc--ccCCceeeCCCcEEeCCCCCCCCCCeEE
Q psy2951 793 FVMKANVSSFEKNEKNDVTAANLDNG---TTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYA 867 (1466)
Q Consensus 793 ~~~~~~v~~i~~~~~~~~~~v~~~~g---~~i~~D~vi~a~G~~p~~~~~--~~~gl~~~~~G~i~vd~~~~t~~~~iya 867 (1466)
+++++++++++..++ .+ .+.+.++ +++++|.||+|+|.+|+++++ +..|++++ +|++.+|+++||+.|+|||
T Consensus 230 i~~~~~V~~i~~~~~-~v-~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~-~g~i~vd~~~~t~~~~VyA 306 (462)
T PRK06416 230 IKTGAKAKKVEQTDD-GV-TVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTD-RGFIEVDEQLRTNVPNIYA 306 (462)
T ss_pred EEeCCEEEEEEEeCC-EE-EEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeec-CCEEeECCCCccCCCCEEE
Confidence 999999999984332 23 4555555 679999999999999999874 67889888 8999999999999999999
Q ss_pred eccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCCcCcccCeeeeeecCceeEEeeccCC------CCceeEec
Q psy2951 868 GGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRFAGYAAG------HTQVDIVG 941 (1466)
Q Consensus 868 ~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~------~~~~~~~~ 941 (1466)
+|||+..+. .+..|..||+.+|.||++....++.....+..+++..+..+|+++. .+-.....
T Consensus 307 iGD~~~~~~-----------~~~~A~~~g~~aa~ni~~~~~~~~~~~~~~~~~~~~~~a~vG~te~~a~~~g~~~~~~~~ 375 (462)
T PRK06416 307 IGDIVGGPM-----------LAHKASAEGIIAAEAIAGNPHPIDYRGIPAVTYTHPEVASVGLTEAKAKEEGFDVKVVKF 375 (462)
T ss_pred eeecCCCcc-----------hHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEECCCceEEEeCCHHHHHhcCCCeEEEEE
Confidence 999986433 4578999999999999986554432222234467778888888752 11000100
Q ss_pred ----------ccccceEEEEEe--cCCeEEEEEeecCc
Q psy2951 942 ----------DLEALKFTAYYS--NADKVLAILTVGMD 967 (1466)
Q Consensus 942 ----------~~~~~~~~~~~~--~~~~i~g~~~~g~~ 967 (1466)
...+..+.|+++ ++++++|++++|.+
T Consensus 376 ~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~ 413 (462)
T PRK06416 376 PFAGNGKALALGETDGFVKLIFDKKDGEVLGAHMVGAR 413 (462)
T ss_pred ecCcChHhHhcCCCceEEEEEEECCCCEEEEEEEECCC
Confidence 113456889888 57999999999976
|
|
| >TIGR03452 mycothione_red mycothione reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=337.10 Aligned_cols=370 Identities=21% Similarity=0.314 Sum_probs=262.9
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCC-------CCCCC----------------CCccc-hhcccCc---
Q psy2951 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN-------FLPYD----------------RVKLS-KQLDIKA--- 95 (1466)
Q Consensus 43 ~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~-------~~~~~----------------~~~~~-~~~~~~~--- 95 (1466)
++|++|||+||||+.||.. ..|.+|.++|.+.-. ..|-. ...+. .....+.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~ 79 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRWPDI 79 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCCCCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCHHHH
Confidence 5899999999999998654 479999988743211 11100 00000 0000000
Q ss_pred --------c-cccccChhh-h--hcCCeEEEeCceEEEeccccccEEEecCCcEEecCEEEEccCCCCCCCCCCCCCCcE
Q psy2951 96 --------D-SILLRTEEF-Y--KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKV 163 (1466)
Q Consensus 96 --------~-~~~~~~~~~-~--~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~~~~~~ 163 (1466)
. .+....... + ++.+++++.++.++. +.++|.+.++.++.||+||||||++|..++..+. ...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~----~~~~V~~~~g~~~~~d~lIiATGs~p~~p~~~~~-~~~ 154 (452)
T TIGR03452 80 VSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFV----GPRTLRTGDGEEITGDQIVIAAGSRPYIPPAIAD-SGV 154 (452)
T ss_pred HHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEe----cCCEEEECCCcEEEeCEEEEEECCCCCCCCCCCC-CCC
Confidence 0 011111111 1 237999999998766 3477888788889999999999999986653332 222
Q ss_pred EEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEEc
Q psy2951 164 FYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVM 243 (1466)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~ 243 (1466)
. +.+.++...+.. .+++++|||+|++|+|+|..|++.|.+|+++++.+.++ +.+++++.+.+.+.+ +.||++++
T Consensus 155 ~-~~~~~~~~~l~~---~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll-~~~d~~~~~~l~~~~-~~gI~i~~ 228 (452)
T TIGR03452 155 R-YHTNEDIMRLPE---LPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLL-RHLDEDISDRFTEIA-KKKWDIRL 228 (452)
T ss_pred E-EEcHHHHHhhhh---cCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccc-cccCHHHHHHHHHHH-hcCCEEEe
Confidence 2 346666666543 35799999999999999999999999999999987765 457888888877655 46899999
Q ss_pred CceEEEEEecCCCCeEEEEcCCCcEEeccEEEEeeccccCcccc--ccCCceecCCccEEECCCCCcCCCCEEEeccccc
Q psy2951 244 KANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAY 321 (1466)
Q Consensus 244 ~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~l--~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD~~~ 321 (1466)
++.|++++.+++ .+ .+.+.+|+++++|.|++|+|++||++++ +..|++++++|+|.||+++||+.|+|||+|||+.
T Consensus 229 ~~~V~~i~~~~~-~v-~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~ 306 (452)
T TIGR03452 229 GRNVTAVEQDGD-GV-TLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRTSARGVWALGDVSS 306 (452)
T ss_pred CCEEEEEEEcCC-eE-EEEEcCCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCcccCCCCEEEeecccC
Confidence 999999986532 23 3556678889999999999999999984 5678999888999999999999999999999987
Q ss_pred ccCccCCCCcceeccHHHHHHHHHHHHHHhcCCC----CCCCCCCc---ccccccceeeEEEEeecCC-----ceEEE--
Q psy2951 322 APLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK----TSLSTIPF---FWTMLFGVGFRFAGYAAGH-----TQVDI-- 387 (1466)
Q Consensus 322 ~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~----~~~~~~p~---~~s~~~~~~~~~~G~~~~~-----~~~~~-- 387 (1466)
.+. ....|.+||+++++|+++.. ..+..+|+ +.+... ++|.+... .++..
T Consensus 307 ~~~-----------l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~i~t~p~ia-----~vGlte~ea~~~g~~~~~~~ 370 (452)
T TIGR03452 307 PYQ-----------LKHVANAEARVVKHNLLHPNDLRKMPHDFVPSAVFTHPQIA-----TVGLTEQEAREAGHDITVKI 370 (452)
T ss_pred ccc-----------ChhHHHHHHHHHHHHhcCCCCcccCCCCCCCeEEECCCCee-----eeeCCHHHHHhcCCCeEEEE
Confidence 542 24579999999999999753 23455663 233333 33332210 01100
Q ss_pred -----ec----ccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----c-cccCcccchhh
Q psy2951 388 -----VG----DLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----L-PHSHRCLGVVL 444 (1466)
Q Consensus 388 -----~g----~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~-~~~~p~~~e~~ 444 (1466)
.+ ..+..+|.+++.+ +++|+|++++|. +++++.++ .+|+.+.+. + .++|||++|.+
T Consensus 371 ~~~~~~~~~~~~~~~~g~~Klv~d~~t~~ilG~~~vg~~a~e~i~~~~-~ai~~~~t~~~l~~~~~~~hPt~~e~~ 445 (452)
T TIGR03452 371 QNYGDVAYGWAMEDTTGFCKLIADRDTGKLLGAHIIGPQASSLIQPLI-TAMAFGLDAREMARKQYWIHPALPEVV 445 (452)
T ss_pred ecCCchhhHhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHcCCCHHHHhhCCcccCCchHHHH
Confidence 00 1245789998886 589999999998 44666666 899998875 3 67999999987
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. |
| >PRK14694 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-33 Score=338.97 Aligned_cols=348 Identities=24% Similarity=0.359 Sum_probs=254.8
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCC---------CCCCCC-----------------ccc-hhcc
Q psy2951 592 SGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENF---------LPYDRV-----------------KLS-KQLD 644 (1466)
Q Consensus 592 ~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~---------~~~~~~-----------------~~~-~~~~ 644 (1466)
....+||+||||||||++||..|+++|.+ |+++|++.. .|-... .+. ....
T Consensus 3 ~~~~~dviVIGaG~aG~~aA~~l~~~g~~--v~lie~~~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~ 80 (468)
T PRK14694 3 SDNNLHIAVIGSGGSAMAAALKATERGAR--VTLIERGTIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPV 80 (468)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCc--EEEEEccccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCc
Confidence 34678999999999999999999999997 777777531 110000 000 0000
Q ss_pred cCcccccccC------------HhHhhhC-CcEEEEceEEEEeccccccEEEccCC--CEEecCEEEEcCCCCCCcCCCC
Q psy2951 645 IKADSILLRT------------EEFYKDN-DIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQA 709 (1466)
Q Consensus 645 ~~~~~~~~~~------------~~~~~~~-gv~~~~~~~v~~i~~~~~~~v~~~~~--~~~~~d~lviAtG~~~~~~~~~ 709 (1466)
.+...+..+. ...+++. +++++.++ +..+ +...+.|++.++ .+++||+||||||++|+.|++|
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~-v~~i-d~~~~~V~~~~g~~~~~~~d~lViATGs~p~~p~i~ 158 (468)
T PRK14694 81 VDRSALLAQQQARVEELRESKYQSILRENAAITVLNGE-ARFV-DERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPPVP 158 (468)
T ss_pred cCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEE-EEEe-cCCEEEEEecCCCeEEEECCEEEEeCCCCCCCCCCC
Confidence 1111221111 1223333 89999998 8888 888888888776 3799999999999999999999
Q ss_pred CCCCcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhc
Q psy2951 710 DGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESK 789 (1466)
Q Consensus 710 ~g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~ 789 (1466)
|.+...++ +..+...+. ..+++++|||+|++|+|+|..|+++|.+|+++.+. +.+ +.+++++.+.+.+.|+++
T Consensus 159 -G~~~~~~~-~~~~~~~l~---~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~-~~l-~~~~~~~~~~l~~~l~~~ 231 (468)
T PRK14694 159 -GLAETPYL-TSTSALELD---HIPERLLVIGASVVALELAQAFARLGSRVTVLARS-RVL-SQEDPAVGEAIEAAFRRE 231 (468)
T ss_pred -CCCCCceE-cchhhhchh---cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEECC-CCC-CCCCHHHHHHHHHHHHhC
Confidence 87632222 223333332 23789999999999999999999999999999874 444 467899999999999999
Q ss_pred CcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCcccc--ccCCceeeCCCcEEeCCCCCCCCCCeEE
Q psy2951 790 GVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYA 867 (1466)
Q Consensus 790 gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~--~~~gl~~~~~G~i~vd~~~~t~~~~iya 867 (1466)
||+++++..+++++.. ++ ...+.+++ .++++|.||+|+|.+|+++++ +.++++. ++|+|.+|++++|+.|+|||
T Consensus 232 GI~v~~~~~v~~i~~~-~~-~~~v~~~~-~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~-~~G~i~vd~~~~Ts~~~IyA 307 (468)
T PRK14694 232 GIEVLKQTQASEVDYN-GR-EFILETNA-GTLRAEQLLVATGRTPNTENLNLESIGVET-ERGAIRIDEHLQTTVSGIYA 307 (468)
T ss_pred CCEEEeCCEEEEEEEc-CC-EEEEEECC-CEEEeCEEEEccCCCCCcCCCCchhcCccc-CCCeEeeCCCcccCCCCEEE
Confidence 9999999999999843 22 23345444 479999999999999999874 5677775 57899999999999999999
Q ss_pred eccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCCcC--cccCeeeeeecCceeEEeeccCC------CCc--e
Q psy2951 868 GGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSL--STIPFFWTMLFGVGFRFAGYAAG------HTQ--V 937 (1466)
Q Consensus 868 ~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~------~~~--~ 937 (1466)
+|||+..+.. .+.|..||++||.||++....+ ..+|. ..++++.+..+|+++. ++- .
T Consensus 308 ~GD~~~~~~~-----------~~~A~~~G~~aa~~i~~~~~~~~~~~~p~--~~~~~p~~a~vGlte~~a~~~g~~~~~~ 374 (468)
T PRK14694 308 AGDCTDQPQF-----------VYVAAAGGSRAAINMTGGDASLDLSAMPE--VIFTDPQVATVGLSEAEAQAQGYDTDSR 374 (468)
T ss_pred EeecCCCccc-----------HHHHHHHHHHHHHHhcCCCcccccCCCCe--EEECCCCeEEeeCCHHHHHHcCCceEEE
Confidence 9999976553 3689999999999999765433 33443 3467778888888752 111 1
Q ss_pred eEec--------ccccceEEEEEe--cCCeEEEEEeecCc
Q psy2951 938 DIVG--------DLEALKFTAYYS--NADKVLAILTVGMD 967 (1466)
Q Consensus 938 ~~~~--------~~~~~~~~~~~~--~~~~i~g~~~~g~~ 967 (1466)
.... ..+...|+|+++ ++++++|++++|.+
T Consensus 375 ~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~ 414 (468)
T PRK14694 375 TLDLENVPRALVNFDTGGFIKMVAERGSGRLLGVQVVAGE 414 (468)
T ss_pred EEecccchhhhhcCCCceEEEEEEECCCCEEEEEEEECCC
Confidence 1110 112466899988 57999999999987
|
|
| >TIGR02053 MerA mercuric reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=341.11 Aligned_cols=344 Identities=20% Similarity=0.290 Sum_probs=253.5
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCc----cchh---------------c-------ccCc--
Q psy2951 596 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK----LSKQ---------------L-------DIKA-- 647 (1466)
Q Consensus 596 ~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~----~~~~---------------~-------~~~~-- 647 (1466)
+||+||||||||++||..|+++|++ |+++|++. +++.... .++. + ..+.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~--v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 77 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGAS--VAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGE 77 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCe--EEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHH
Confidence 5899999999999999999999998 77888764 2221100 0000 0 0011
Q ss_pred -----ccccc-----cCHhHhhhCCcEEEEceEEEEeccccccEEEccCC-CEEecCEEEEcCCCCCCcCCCCCCCCcEE
Q psy2951 648 -----DSILL-----RTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDG-TSIDFTKIYLATGSSPRTISQADGVNKVF 716 (1466)
Q Consensus 648 -----~~~~~-----~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~-~~~~~d~lviAtG~~~~~~~~~~g~~~~~ 716 (1466)
+++.. .....+++.+++++.++ +..+ + .+++.+.++ ..+.||+||||||++|+.|++| |.+...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~-~~~~-~--~~~v~v~~g~~~~~~~~lIiATGs~p~~p~i~-G~~~~~ 152 (463)
T TIGR02053 78 LLEGKREVVEELRHEKYEDVLSSYGVDYLRGR-ARFK-D--PKTVKVDLGREVRGAKRFLIATGARPAIPPIP-GLKEAG 152 (463)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHhCCcEEEEEE-EEEc-c--CCEEEEcCCeEEEEeCEEEEcCCCCCCCCCCC-CcccCc
Confidence 11111 12345677899999988 5554 3 456776654 3689999999999999999999 876321
Q ss_pred EecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEcc
Q psy2951 717 YLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMK 796 (1466)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~ 796 (1466)
+.+..++.... ..+++++|||+|++|+|+|..|+++|.+|+++++.++++ +.+++++...+.+.+++.||+++++
T Consensus 153 -~~~~~~~~~~~---~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-~~~d~~~~~~l~~~l~~~gV~i~~~ 227 (463)
T TIGR02053 153 -YLTSEEALALD---RIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL-PREEPEISAAVEEALAEEGIEVVTS 227 (463)
T ss_pred -eECchhhhCcc---cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC-CccCHHHHHHHHHHHHHcCCEEEcC
Confidence 12333333222 236999999999999999999999999999999998876 4578999999999999999999999
Q ss_pred ceEEEEEecCCCceEEEECC---CCcEEecCEEEEccccccCcc-c-cccCCceeeCCCcEEeCCCCCCCCCCeEEeccc
Q psy2951 797 ANVSSFEKNEKNDVTAANLD---NGTTIPADLVIVGIGTVLNTN-Y-LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 871 (1466)
Q Consensus 797 ~~v~~i~~~~~~~~~~v~~~---~g~~i~~D~vi~a~G~~p~~~-~-~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~ 871 (1466)
+++++++..++. ..+.+. +++++++|.||+|+|++|+++ + ++..+++++++|+|.||+++||+.|+|||+|||
T Consensus 228 ~~V~~i~~~~~~--~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~VyAiGD~ 305 (463)
T TIGR02053 228 AQVKAVSVRGGG--KIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRTSNPGIYAAGDV 305 (463)
T ss_pred cEEEEEEEcCCE--EEEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCccCCCCCEEEeeec
Confidence 999999843222 233332 346899999999999999988 5 678899999999999999999999999999999
Q ss_pred cccCCcccCCceeeeccHHHHHHHHHHHHHHhccC-CCcC--cccCeeeeeecCceeEEeeccCC------CCceeE--e
Q psy2951 872 AYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEK-KTSL--STIPFFWTMLFGVGFRFAGYAAG------HTQVDI--V 940 (1466)
Q Consensus 872 ~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~-~~~~--~~~~~~~~~~~~~~~~~~g~~~~------~~~~~~--~ 940 (1466)
+..+. .++.|..||++||.||++. ...+ ..+| +..+++..+..+|+++. ++-... .
T Consensus 306 ~~~~~-----------~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p--~~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~ 372 (463)
T TIGR02053 306 TGGLQ-----------LEYVAAKEGVVAAENALGGANAKLDLLVIP--RVVFTDPAVASVGLTEAEAQKAGIECDCRTLP 372 (463)
T ss_pred CCCcc-----------cHhHHHHHHHHHHHHhcCCCCCccCcCCCC--eEEeccCceEEEeCCHHHHHhcCCCeEEEEEe
Confidence 97643 3478999999999999986 4433 3344 33456677888887652 110000 0
Q ss_pred --c------ccccceEEEEEe--cCCeEEEEEeecCc
Q psy2951 941 --G------DLEALKFTAYYS--NADKVLAILTVGMD 967 (1466)
Q Consensus 941 --~------~~~~~~~~~~~~--~~~~i~g~~~~g~~ 967 (1466)
. ..+...|.|+++ ++++++|++++|.+
T Consensus 373 ~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~ 409 (463)
T TIGR02053 373 LTNVPRARINRDTRGFIKLVAEPGTGKVLGVQVVAPE 409 (463)
T ss_pred cccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCC
Confidence 0 112467899888 47999999999987
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH. |
| >PRK06912 acoL dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=338.42 Aligned_cols=372 Identities=20% Similarity=0.288 Sum_probs=260.3
Q ss_pred cEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCC-Cccchh----------------ccc---------Ccccc
Q psy2951 45 TFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR-VKLSKQ----------------LDI---------KADSI 98 (1466)
Q Consensus 45 dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~~-~~~~~~----------------~~~---------~~~~~ 98 (1466)
+|+||||||||++||..|++.|.++.|++.+.-......+ +..++. ++. +...+
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 81 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWKQM 81 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHHHH
Confidence 7999999999999999999999998887743311000000 000111 011 11111
Q ss_pred c-----------ccChhhhhcCCeEEEeCceEEEeccccccEEEecCC-cEEecCEEEEccCCCCCCCCCCCCCCcEEEe
Q psy2951 99 L-----------LRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDG-TSIDFTKIYLATGSSPRTISQADGVNKVFYL 166 (1466)
Q Consensus 99 ~-----------~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~-~~~~~d~lviAtG~~~~~~~~~~~~~~~~~~ 166 (1466)
. ......+++.+++++.++..+. +....++..+++ .+++||+||||||++|+.+|. ++......+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~--~~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p~-~~~~~~~v~ 158 (458)
T PRK06912 82 QARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFE--TDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELPF-APFDGKWII 158 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEc--cCCEEEEeeCCCcEEEECCEEEEeCCCCCCCCCC-CCCCCCeEE
Confidence 1 1223345567899999987654 333334444444 369999999999999986653 332222222
Q ss_pred cCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEEcCce
Q psy2951 167 RTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKAN 246 (1466)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~ 246 (1466)
+..++..+. ..+++++|||+|++|+|+|..+.+.|.+|+++++.+.+++ .+++++.+.+.+.|++.||+++++++
T Consensus 159 -~~~~~~~~~---~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~-~~d~e~~~~l~~~L~~~GI~i~~~~~ 233 (458)
T PRK06912 159 -NSKHAMSLP---SIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP-GEDEDIAHILREKLENDGVKIFTGAA 233 (458)
T ss_pred -cchHHhCcc---ccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc-cccHHHHHHHHHHHHHCCCEEEECCE
Confidence 334444433 2357999999999999999999999999999999887764 56889999999999999999999999
Q ss_pred EEEEEecCCCCeEEEEcCCC-cEEeccEEEEeeccccCcccc--ccCCceecCCccEEECCCCCcCCCCEEEeccccccc
Q psy2951 247 VSSFEKNEKNDVTAANLDNG-TTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 323 (1466)
Q Consensus 247 v~~i~~~~~~~~~~v~~~~g-~~i~~D~Vi~a~G~~p~~~~l--~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~ 323 (1466)
+++++.++ . ...+..+++ .++++|.|++|+|++||++++ +..+++++++| +.||+++||+.|+|||+|||+..+
T Consensus 234 V~~i~~~~-~-~v~~~~~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~g-i~Vd~~~~ts~~~VyA~GD~~~~~ 310 (458)
T PRK06912 234 LKGLNSYK-K-QALFEYEGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKG-ISVNEHMQTNVPHIYACGDVIGGI 310 (458)
T ss_pred EEEEEEcC-C-EEEEEECCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCC-EEeCCCeecCCCCEEEEeecCCCc
Confidence 99997643 2 222332222 369999999999999999854 56788887766 999999999999999999998643
Q ss_pred CccCCCCcceeccHHHHHHHHHHHHHHhcCCCCC--CCCCCc---ccccccceeeEEEEeecCC-----ceE-----EEe
Q psy2951 324 LHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS--LSTIPF---FWTMLFGVGFRFAGYAAGH-----TQV-----DIV 388 (1466)
Q Consensus 324 ~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~--~~~~p~---~~s~~~~~~~~~~G~~~~~-----~~~-----~~~ 388 (1466)
..+..|..||+.++.|+++.... +..+|. +.++...+| .+... .++ .+.
T Consensus 311 -----------~la~~A~~~g~~aa~~~~g~~~~~~~~~~p~~v~~~p~~a~vG-----lte~~a~~~g~~~~~~~~~~~ 374 (458)
T PRK06912 311 -----------QLAHVAFHEGTTAALHASGEDVKVNYHAVPRCIYTSPEIASVG-----LTEKQAREQYGDIRIGEFPFT 374 (458)
T ss_pred -----------ccHHHHHHHHHHHHHHHcCCCCCCCcCCCCeEEecCchhEEee-----CCHHHHHHCCCCeEEEEEecC
Confidence 34568999999999999976433 345553 233333333 32210 000 011
Q ss_pred ------cccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 389 ------GDLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 389 ------g~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
-..+..+|.+++.+ +++|+|++++|. +++++.++ .+|+.+.+. ++++|||++|.+
T Consensus 375 ~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~-~ai~~~~t~~~l~~~~~~hPt~~e~~ 444 (458)
T PRK06912 375 ANGKALIIGEQTGKVKVIVEPKYQEIVGISIIGPRATELIGQGT-VMIHTEVTADIMEDFIAAHPTLSEAI 444 (458)
T ss_pred cchhHhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhhCcccCCCHHHHH
Confidence 01135789999886 489999999998 45666666 899988875 799999999988
|
|
| >PTZ00318 NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-34 Score=342.38 Aligned_cols=305 Identities=23% Similarity=0.306 Sum_probs=244.9
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcc--cCcccccccCHhHhhhCCcEEEEceE
Q psy2951 593 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD--IKADSILLRTEEFYKDNDIHVIKGKK 670 (1466)
Q Consensus 593 ~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~gv~~~~~~~ 670 (1466)
..+++|||||||+||+++|..|.+.+ .+|+++++++++.|... +..... .+.+++...+...+...+++++.++
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~--~~ItlI~~~~~~~~~~~-l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~- 83 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKK--YNITVISPRNHMLFTPL-LPQTTTGTLEFRSICEPVRPALAKLPNRYLRAV- 83 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCC--CeEEEEcCCCCcchhhh-HHHhcccCCChHHhHHHHHHHhccCCeEEEEEE-
Confidence 45689999999999999999997554 45999999988777543 222221 3344555555666777889998887
Q ss_pred EEEeccccccEEEc----------cCCCEEecCEEEEcCCCCCCcCCCCCCCC-cEEEecCHHHHHhhcccC--------
Q psy2951 671 IISDSELNEKKIKL----------QDGTSIDFTKIYLATGSSPRTISQADGVN-KVFYLRTVEDANNIAPHI-------- 731 (1466)
Q Consensus 671 v~~i~~~~~~~v~~----------~~~~~~~~d~lviAtG~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~-------- 731 (1466)
|+.+ |.+++.+.+ .++.+++||+||||||+++..+++| |.+ .++.++++.++..+.+.+
T Consensus 84 V~~I-d~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~ip-G~~e~~~~~~~~~~a~~~~~~l~~~~~~~~ 161 (424)
T PTZ00318 84 VYDV-DFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFNIP-GVEERAFFLKEVNHARGIRKRIVQCIERAS 161 (424)
T ss_pred EEEE-EcCCCEEEEecccccccccCCceEecCCEEEECCCcccCCCCCC-CHHHcCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999 998888887 4567899999999999999999999 876 566778888776654322
Q ss_pred ---------CCCCcEEEECCChHHHHHHHHHhc--------------cCCeEEEEeecCccCccccCHHHHHHHHHHHHh
Q psy2951 732 ---------TPESNVVVIGSSFIGMEAAAFCAS--------------KVKSVTVVGRGAVPFQESLGKEVGERITKLFES 788 (1466)
Q Consensus 732 ---------~~~~~vvVvG~G~~g~e~A~~l~~--------------~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~ 788 (1466)
.+.++++|||+|++|+|+|..|++ .+.+|+++++.++++ +.+++++.+.+.+.|++
T Consensus 162 ~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll-~~~~~~~~~~~~~~L~~ 240 (424)
T PTZ00318 162 LPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL-GSFDQALRKYGQRRLRR 240 (424)
T ss_pred CCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc-ccCCHHHHHHHHHHHHH
Confidence 112589999999999999998875 368999999998877 47889999999999999
Q ss_pred cCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCccccccCCceeeCCCcEEeCCCCC-CCCCCeEE
Q psy2951 789 KGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLE-TNVPGVYA 867 (1466)
Q Consensus 789 ~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~-t~~~~iya 867 (1466)
+||+++++++++++..+ .+.+++|+++++|++|+++|.+|+ ++++.++++++++|+|.||+++| +++|||||
T Consensus 241 ~gV~v~~~~~v~~v~~~------~v~~~~g~~i~~d~vi~~~G~~~~-~~~~~~~l~~~~~G~I~Vd~~l~~~~~~~IfA 313 (424)
T PTZ00318 241 LGVDIRTKTAVKEVLDK------EVVLKDGEVIPTGLVVWSTGVGPG-PLTKQLKVDKTSRGRISVDDHLRVKPIPNVFA 313 (424)
T ss_pred CCCEEEeCCeEEEEeCC------EEEECCCCEEEccEEEEccCCCCc-chhhhcCCcccCCCcEEeCCCcccCCCCCEEE
Confidence 99999999999999832 466889999999999999999998 58888889888899999999999 58999999
Q ss_pred eccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCCcC-cccCeee
Q psy2951 868 GGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSL-STIPFFW 917 (1466)
Q Consensus 868 ~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~~~-~~~~~~~ 917 (1466)
+|||+..+.. ..++.++.|++||..+|.||....... +..||.+
T Consensus 314 iGD~a~~~~~------~~~~~~~~A~~qg~~~A~ni~~~l~g~~~~~~~~~ 358 (424)
T PTZ00318 314 LGDCAANEER------PLPTLAQVASQQGVYLAKEFNNELKGKPMSKPFVY 358 (424)
T ss_pred EeccccCCCC------CCCCchHHHHHHHHHHHHHHHHHhcCCCCCCCCee
Confidence 9999986432 123467899999999999998654333 3455544
|
|
| >PRK07845 flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=339.36 Aligned_cols=347 Identities=21% Similarity=0.336 Sum_probs=253.3
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC---------CCCCCCCccch----------hccc----------
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN---------FLPYDRVKLSK----------QLDI---------- 645 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~---------~~~~~~~~~~~----------~~~~---------- 645 (1466)
+++|+||||||||+.||..++++|.+ |++++++. |.|........ .++.
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g~~--v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 78 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLGAD--VTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARV 78 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCe--EEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCccccc
Confidence 46899999999999999999999988 77777754 22211000000 0000
Q ss_pred Ccccc-----------cccCHhHhhhCCcEEEEceEEEEe---ccccccEEEccCCC--EEecCEEEEcCCCCCCcCCCC
Q psy2951 646 KADSI-----------LLRTEEFYKDNDIHVIKGKKIISD---SELNEKKIKLQDGT--SIDFTKIYLATGSSPRTISQA 709 (1466)
Q Consensus 646 ~~~~~-----------~~~~~~~~~~~gv~~~~~~~v~~i---~~~~~~~v~~~~~~--~~~~d~lviAtG~~~~~~~~~ 709 (1466)
+...+ .....+.+++.+|+++.++ +..+ .+.....+.+.+|. ++.||+||||||++|..|+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~-~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~~p~~ 157 (466)
T PRK07845 79 DLPAVNARVKALAAAQSADIRARLEREGVRVIAGR-GRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILPTA 157 (466)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE-EEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCCCCCC
Confidence 00011 1123345667899999998 6552 14444556555665 799999999999999877654
Q ss_pred CCCC--cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHH
Q psy2951 710 DGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFE 787 (1466)
Q Consensus 710 ~g~~--~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~ 787 (1466)
+.+ .++...++. .+. ..+++++|||+|++|+|+|..|++.|.+||++++.++++ +.+++++.+.+.+.|+
T Consensus 158 -~~~~~~v~~~~~~~---~~~---~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l-~~~d~~~~~~l~~~L~ 229 (466)
T PRK07845 158 -EPDGERILTWRQLY---DLD---ELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVL-PGEDADAAEVLEEVFA 229 (466)
T ss_pred -CCCCceEEeehhhh---ccc---ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCC-CCCCHHHHHHHHHHHH
Confidence 333 454433322 222 237899999999999999999999999999999998777 4578999999999999
Q ss_pred hcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCccc--cccCCceeeCCCcEEeCCCCCCCCCCe
Q psy2951 788 SKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGV 865 (1466)
Q Consensus 788 ~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t~~~~i 865 (1466)
++||++++++++.+++..+ +.+ .+.+.+|+++++|.|++++|++|++++ +++.|++++++|+|.||+++||+.|+|
T Consensus 230 ~~gV~i~~~~~v~~v~~~~-~~~-~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~Ts~~~I 307 (466)
T PRK07845 230 RRGMTVLKRSRAESVERTG-DGV-VVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRTSVPGI 307 (466)
T ss_pred HCCcEEEcCCEEEEEEEeC-CEE-EEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCcccCCCCE
Confidence 9999999999999997432 233 466678889999999999999999885 578899999999999999999999999
Q ss_pred EEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCC---cCcccCeeeeeec-CceeEEeeccCC------CC
Q psy2951 866 YAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT---SLSTIPFFWTMLF-GVGFRFAGYAAG------HT 935 (1466)
Q Consensus 866 ya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~---~~~~~~~~~~~~~-~~~~~~~g~~~~------~~ 935 (1466)
||+|||+..+. .++.|..||++||.||++... .+..+| +.+| ...+..+|+++. ++
T Consensus 308 yA~GD~~~~~~-----------l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p---~~vf~~p~~a~vGlte~~a~~~g~~ 373 (466)
T PRK07845 308 YAAGDCTGVLP-----------LASVAAMQGRIAMYHALGEAVSPLRLKTVA---SNVFTRPEIATVGVSQAAIDSGEVP 373 (466)
T ss_pred EEEeeccCCcc-----------chhHHHHHHHHHHHHHcCCCCCcCCCCCCC---EEEeCCCcceeecCCHHHHHhCCCc
Confidence 99999987543 457999999999999997542 223444 2345 456777787642 11
Q ss_pred ceeEe--c--------ccccceEEEEEe--cCCeEEEEEeecCch
Q psy2951 936 QVDIV--G--------DLEALKFTAYYS--NADKVLAILTVGMDP 968 (1466)
Q Consensus 936 ~~~~~--~--------~~~~~~~~~~~~--~~~~i~g~~~~g~~~ 968 (1466)
-.... . .-....|+|+++ ++++++|++++|.+.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a 418 (466)
T PRK07845 374 ARTVMLPLATNPRAKMSGLRDGFVKLFCRPGTGVVIGGVVVAPRA 418 (466)
T ss_pred eEEEEEecccCchhhhcCCCceEEEEEEECCCCEEEEEEEECCCH
Confidence 00000 0 012457899988 478999999999763
|
|
| >TIGR01423 trypano_reduc trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=336.01 Aligned_cols=345 Identities=20% Similarity=0.286 Sum_probs=250.1
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHc-CCCccEEEEcCC--------CCCCCC----CCccchh----------------cc
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQN-GFTGKLYFITDE--------NFLPYD----RVKLSKQ----------------LD 644 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~-g~~~~v~~~~~~--------~~~~~~----~~~~~~~----------------~~ 644 (1466)
+.+||+||||||||+.||..++++ |.+ |.++|++ ..+++. -|-.++. ++
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~--V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~g 79 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKR--VAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFG 79 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCE--EEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccC
Confidence 468999999999999999999997 888 7777752 111110 0000000 00
Q ss_pred ---------cCcccccc-----------cCHhHhhh-CCcEEEEceEEEEeccccccEEEccC--------CCEEecCEE
Q psy2951 645 ---------IKADSILL-----------RTEEFYKD-NDIHVIKGKKIISDSELNEKKIKLQD--------GTSIDFTKI 695 (1466)
Q Consensus 645 ---------~~~~~~~~-----------~~~~~~~~-~gv~~~~~~~v~~i~~~~~~~v~~~~--------~~~~~~d~l 695 (1466)
.+...+.. ...+.+++ .|++++.+. ...+ +. ++|.+.. ..++.||+|
T Consensus 80 i~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~-a~f~-~~--~~v~V~~~~~~~~~~~~~~~~d~l 155 (486)
T TIGR01423 80 WEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGW-GALE-DK--NVVLVRESADPKSAVKERLQAEHI 155 (486)
T ss_pred eeccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEE-EEEc-cC--CEEEEeeccCCCCCcceEEECCEE
Confidence 01111111 11223555 499999998 5554 43 4444321 247999999
Q ss_pred EEcCCCCCCcCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhcc---CCeEEEEeecCccCcc
Q psy2951 696 YLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASK---VKSVTVVGRGAVPFQE 772 (1466)
Q Consensus 696 viAtG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~---g~~V~lv~~~~~~~~~ 772 (1466)
|||||++|..|+++ |.+.++ +.++...+. ..+++++|||+|++|+|+|..+..+ |.+|||+++.++++ +
T Consensus 156 IIATGs~p~~p~i~-G~~~~~---~~~~~~~~~---~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il-~ 227 (486)
T TIGR01423 156 LLATGSWPQMLGIP-GIEHCI---SSNEAFYLD---EPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL-R 227 (486)
T ss_pred EEecCCCCCCCCCC-Chhhee---chhhhhccc---cCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc-c
Confidence 99999999999999 876443 344443332 3479999999999999999877654 99999999998877 5
Q ss_pred ccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCccc--cccCCceeeCCC
Q psy2951 773 SLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQK 850 (1466)
Q Consensus 773 ~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~~G 850 (1466)
.+++++.+.+.+.|+++||++++++.+++++..++ ....+.+.+++++++|.|++|+|++|++++ ++..+++++++|
T Consensus 228 ~~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~-~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G 306 (486)
T TIGR01423 228 GFDSTLRKELTKQLRANGINIMTNENPAKVTLNAD-GSKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKG 306 (486)
T ss_pred ccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCC-ceEEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceECCCC
Confidence 78999999999999999999999999999984433 334566677889999999999999999886 467899999999
Q ss_pred cEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCC---cCcccCeeeeeecC-ceeE
Q psy2951 851 AVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT---SLSTIPFFWTMLFG-VGFR 926 (1466)
Q Consensus 851 ~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~---~~~~~~~~~~~~~~-~~~~ 926 (1466)
+|.||+++||+.|+|||+|||+..+.. ++.|.+||+++|+||++... .+..+|. .+|. +.+.
T Consensus 307 ~I~Vd~~l~Ts~~~IyA~GDv~~~~~l-----------~~~A~~qG~~aa~ni~g~~~~~~~~~~vp~---~vft~peia 372 (486)
T TIGR01423 307 AIQVDEFSRTNVPNIYAIGDVTDRVML-----------TPVAINEGAAFVDTVFGNKPRKTDHTRVAS---AVFSIPPIG 372 (486)
T ss_pred CEecCCCCcCCCCCEEEeeecCCCccc-----------HHHHHHHHHHHHHHHhCCCCcccCCCCCCE---EEeCCCceE
Confidence 999999999999999999999876543 36899999999999997542 2334552 3444 3577
Q ss_pred EeeccCCC-----Ccee--Eec----------ccccceEEEEEe--cCCeEEEEEeecCc
Q psy2951 927 FAGYAAGH-----TQVD--IVG----------DLEALKFTAYYS--NADKVLAILTVGMD 967 (1466)
Q Consensus 927 ~~g~~~~~-----~~~~--~~~----------~~~~~~~~~~~~--~~~~i~g~~~~g~~ 967 (1466)
.+|+++.. .... ... ......|.|+++ ++++++|+++++..
T Consensus 373 ~vGlte~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~~~~iLGa~ivg~~ 432 (486)
T TIGR01423 373 TCGLVEEDAAKKFEKVAVYESSFTPLMHNISGSKYKKFVAKIVTNHADGTVLGVHLLGDS 432 (486)
T ss_pred EeeCCHHHHHhcCCceEEEEEeeCchhhhhccCccCceEEEEEEECCCCEEEEEEEECCC
Confidence 78876521 1110 000 001246888888 46899999999966
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. |
| >PRK06292 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=343.02 Aligned_cols=376 Identities=26% Similarity=0.309 Sum_probs=258.2
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCC-CCCCccch----------------hcc-------cCccc
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP-YDRVKLSK----------------QLD-------IKADS 97 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~-~~~~~~~~----------------~~~-------~~~~~ 97 (1466)
.++||+||||||||++||..|++.|.++.|++.+.-.... ...+..++ .+. .+..+
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~~~~ 81 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKGPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKIDFKK 81 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCCccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccCHHH
Confidence 4689999999999999999999999998887652110000 00000010 000 01111
Q ss_pred cccc-----------C-hhhhhcCCeEEEeCceEEEeccccccEEEecCCcEEecCEEEEccCCC-CCCCCCCCCCCcEE
Q psy2951 98 ILLR-----------T-EEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSS-PRTISQADGVNKVF 164 (1466)
Q Consensus 98 ~~~~-----------~-~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~~~~~d~lviAtG~~-~~~~~~~~~~~~~~ 164 (1466)
+..+ . ...++..+++++.+..... +.+++.+ ++.++.||+||||||++ |.. |.........
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~----~~~~v~v-~~~~~~~d~lIiATGs~~p~i-pg~~~~~~~~ 155 (460)
T PRK06292 82 VMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFV----DPNTVEV-NGERIEAKNIVIATGSRVPPI-PGVWLILGDR 155 (460)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEc----cCCEEEE-CcEEEEeCEEEEeCCCCCCCC-CCCcccCCCc
Confidence 1111 1 2234556788887765433 2245555 56789999999999998 432 2221101111
Q ss_pred EecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEEcC
Q psy2951 165 YLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMK 244 (1466)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~ 244 (1466)
+.+..+...+. ..+++++|||+|++|+|+|..|+++|.+|+++++.+.++ +.+++++.+.+.+.|+++ |+++++
T Consensus 156 -~~~~~~~~~~~---~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-~~~d~~~~~~~~~~l~~~-I~i~~~ 229 (460)
T PRK06292 156 -LLTSDDAFELD---KLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRIL-PLEDPEVSKQAQKILSKE-FKIKLG 229 (460)
T ss_pred -EECchHHhCcc---ccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC-cchhHHHHHHHHHHHhhc-cEEEcC
Confidence 11334443332 245899999999999999999999999999999988766 467889999999999999 999999
Q ss_pred ceEEEEEecCCCCeEEEEc--CCCcEEeccEEEEeeccccCccc--cccCCceecCCccEEECCCCCcCCCCEEEecccc
Q psy2951 245 ANVSSFEKNEKNDVTAANL--DNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA 320 (1466)
Q Consensus 245 ~~v~~i~~~~~~~~~~v~~--~~g~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD~~ 320 (1466)
+++.+++.+++..+. +.+ .+++++++|.|++|+|++||+++ ++..+++++++|+|.||+++||+.|+|||+|||+
T Consensus 230 ~~v~~i~~~~~~~v~-~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~ts~~~IyA~GD~~ 308 (460)
T PRK06292 230 AKVTSVEKSGDEKVE-ELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVPGIYAAGDVN 308 (460)
T ss_pred CEEEEEEEcCCceEE-EEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCcccCCCCEEEEEecC
Confidence 999999865321222 222 33357999999999999999985 5678899988899999999999999999999998
Q ss_pred cccCccCCCCcceeccHHHHHHHHHHHHHHhcCC-CC--CCCCCCcccccccceeeEEEEeecCC-----ceE-----EE
Q psy2951 321 YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEK-KT--SLSTIPFFWTMLFGVGFRFAGYAAGH-----TQV-----DI 387 (1466)
Q Consensus 321 ~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~-~~--~~~~~p~~~s~~~~~~~~~~G~~~~~-----~~~-----~~ 387 (1466)
..+ ..+..|..||+.+|.||++. .. .+..+|+.. .....+..+|.+... .++ .+
T Consensus 309 ~~~-----------~~~~~A~~qg~~aa~~i~~~~~~~~~~~~~p~~~--~~~~~~a~vG~te~~a~~~g~~~~~~~~~~ 375 (460)
T PRK06292 309 GKP-----------PLLHEAADEGRIAAENAAGDVAGGVRYHPIPSVV--FTDPQIASVGLTEEELKAAGIDYVVGEVPF 375 (460)
T ss_pred CCc-----------cchhHHHHHHHHHHHHhcCCCCCCcCCCCCCeEE--ECCCccEEeECCHHHHHhcCCCeEEEEEec
Confidence 754 23567999999999999974 22 234555321 111223344433210 011 11
Q ss_pred e--c----ccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 388 V--G----DLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 388 ~--g----~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
. . ..+..+|.+++.+ +++|+|++++|. ++++..++ .+|+.+.+. ++++|||++|.+
T Consensus 376 ~~~~~~~~~~~~~g~~klv~d~~~~~ilG~~~vg~~a~e~i~~~~-~ai~~~~t~~~l~~~~~~hPt~~e~~ 446 (460)
T PRK06292 376 EAQGRARVMGKNDGFVKVYADKKTGRLLGAHIIGPDAEHLIHLLA-WAMQQGLTVEDLLRMPFYHPTLSEGL 446 (460)
T ss_pred ccchHHHhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhhCccCCCCHHHHH
Confidence 1 0 1135789988886 489999999998 45666666 999988875 799999999988
|
|
| >KOG0405|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=293.21 Aligned_cols=381 Identities=21% Similarity=0.289 Sum_probs=281.7
Q ss_pred CCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCC--------CCCC---------------------CCCCcc---
Q psy2951 40 SGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE--------NFLP---------------------YDRVKL--- 87 (1466)
Q Consensus 40 ~~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~--------~~~~---------------------~~~~~~--- 87 (1466)
..+.+|.+|||||-+|+.+|+++++.|.++.|+|..-. ...| |.....
T Consensus 17 ~~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~f 96 (478)
T KOG0405|consen 17 DVKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSF 96 (478)
T ss_pred cccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCC
Confidence 34589999999999999999999999999999876511 0111 111000
Q ss_pred -chhcccCcccccccC----hhhhhcCCeEEEeCceEEEeccccccEEEecCCc--EEecCEEEEccCCCCCCCCCCCCC
Q psy2951 88 -SKQLDIKADSILLRT----EEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGT--SIDFTKIYLATGSSPRTISQADGV 160 (1466)
Q Consensus 88 -~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~--~~~~d~lviAtG~~~~~~~~~~~~ 160 (1466)
++.+....+....++ +..+.+.+++++.|...+. ++.+.+|...++. .+++++++||||++|..| .+|+.
T Consensus 97 dW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~--~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~P-nIpG~ 173 (478)
T KOG0405|consen 97 DWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFV--SPGEVEVEVNDGTKIVYTAKHILIATGGRPIIP-NIPGA 173 (478)
T ss_pred cHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEc--CCCceEEEecCCeeEEEecceEEEEeCCccCCC-CCCch
Confidence 001111223333343 3344566899999998765 4455667776774 378999999999999854 78877
Q ss_pred CcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcE
Q psy2951 161 NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVK 240 (1466)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~ 240 (1466)
+... +.+.+..+.. .++|++|+|+|++++|+|..++.+|.+++++-|.+..+ +.|++.+++.+.+.|+.+||+
T Consensus 174 E~gi---dSDgff~Lee---~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvL-R~FD~~i~~~v~~~~~~~gin 246 (478)
T KOG0405|consen 174 ELGI---DSDGFFDLEE---QPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVL-RGFDEMISDLVTEHLEGRGIN 246 (478)
T ss_pred hhcc---ccccccchhh---cCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhh-cchhHHHHHHHHHHhhhccee
Confidence 6433 3344444432 35799999999999999999999999999999988776 789999999999999999999
Q ss_pred EEcCceEEEEEecCCCCeEEEEcCCCcEEeccEEEEeeccccCccc--cccCCceecCCccEEECCCCCcCCCCEEEecc
Q psy2951 241 FVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGD 318 (1466)
Q Consensus 241 i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD 318 (1466)
+|.++.++++.+..++.. .+....+....+|.++||+|+.||+.- ++..|++++++|.|.||++.+||+|+||++||
T Consensus 247 vh~~s~~~~v~K~~~g~~-~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~Tnvp~I~avGD 325 (478)
T KOG0405|consen 247 VHKNSSVTKVIKTDDGLE-LVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNTNVPSIWAVGD 325 (478)
T ss_pred ecccccceeeeecCCCce-EEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccCCCCceEEecc
Confidence 999999999988765433 344555666669999999999999874 58889999999999999999999999999999
Q ss_pred cccccCccCCCCcceeccHHHHHHHHHHHHHHhcCC----CCCCCCCC---cccccccceeeEE------EE-----eec
Q psy2951 319 IAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEK----KTSLSTIP---FFWTMLFGVGFRF------AG-----YAA 380 (1466)
Q Consensus 319 ~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~----~~~~~~~p---~~~s~~~~~~~~~------~G-----~~~ 380 (1466)
+++.- ...+.|.+.|+..+..+.+. ..+|..+| |+.|....+|+.. .| ...
T Consensus 326 v~gk~-----------~LTPVAiaagr~la~rlF~~~~~~kldY~nVp~vVFshP~igtVGLtE~EAiekyg~~~i~vy~ 394 (478)
T KOG0405|consen 326 VTGKI-----------NLTPVAIAAGRKLANRLFGGGKDTKLDYENVPCVVFSHPPIGTVGLTEEEAIEKYGKGDIKVYT 394 (478)
T ss_pred ccCcE-----------ecchHHHhhhhhHHHHhhcCCCCCccccccCceEEEecCCcccccCCHHHHHHHhCccceEEEe
Confidence 98753 44467999999999998873 34677887 5677776666511 01 011
Q ss_pred CCceE---EEecccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 381 GHTQV---DIVGDLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 381 ~~~~~---~~~g~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
+.++. ...+..+ ..+.++++. ..+++|+++.|. ++..+.++ -++.|+.++ ++..|||.+|.+
T Consensus 395 s~F~pm~~a~~~~k~-kt~mKlvc~~~~eKVvG~hm~G~~s~EilQGf~-VAvKmGaTKadFD~tVaIHPTSAEEl 468 (478)
T KOG0405|consen 395 SKFNPMKYAMSGRKE-KTLMKLVCAGKSEKVVGVHMCGDDSAEILQGFA-VAVKMGATKADFDSTVAIHPTSAEEL 468 (478)
T ss_pred cCCchhHhHhhcCCc-ceEEEEEEecCCCcEEEEEEecCCcHHHHhhhh-hheecCcchhhhccceeecCCCHHHh
Confidence 11111 1223322 344555555 389999999999 45666777 899999987 899999999988
|
|
| >PRK07846 mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-33 Score=333.40 Aligned_cols=343 Identities=21% Similarity=0.286 Sum_probs=250.4
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC---------CCCCCC----------------Cccc-hhcccCccc
Q psy2951 596 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN---------FLPYDR----------------VKLS-KQLDIKADS 649 (1466)
Q Consensus 596 ~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~---------~~~~~~----------------~~~~-~~~~~~~~~ 649 (1466)
+|++||||||||.+||.. ..|.+ |.++|++. |.|-.. ..+. .....+..+
T Consensus 2 yD~vVIG~G~~g~~aa~~--~~G~~--V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 77 (451)
T PRK07846 2 YDLIIIGTGSGNSILDER--FADKR--IAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWPD 77 (451)
T ss_pred CCEEEECCCHHHHHHHHH--HCCCe--EEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHHH
Confidence 799999999999999876 45877 77888753 222100 0000 000011111
Q ss_pred c-------ccc-----CHhH-hhhCCcEEEEceEEEEeccccccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCCcEE
Q psy2951 650 I-------LLR-----TEEF-YKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVF 716 (1466)
Q Consensus 650 ~-------~~~-----~~~~-~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~~~~ 716 (1466)
+ ..+ .... ++..|++++.++ ...+ +.++|++.++++++||+||||||++|+.|+++ |.+...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a~~~---~~~~V~v~~g~~~~~d~lViATGs~p~~p~i~-g~~~~~ 152 (451)
T PRK07846 78 IVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGH-ARFI---GPKTLRTGDGEEITADQVVIAAGSRPVIPPVI-ADSGVR 152 (451)
T ss_pred HHHHHHHHHHHHhccchhhhhhhhCCcEEEEEE-EEEe---cCCEEEECCCCEEEeCEEEEcCCCCCCCCCCC-CcCCcc
Confidence 1 111 1122 556799999998 5555 46778777778899999999999999999999 765332
Q ss_pred EecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEcc
Q psy2951 717 YLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMK 796 (1466)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~ 796 (1466)
+.+.++...+.. .+++++|||+|++|+|+|..|+++|.+|+++++.++++ +.+++++.+.+.+.+ +.||+++++
T Consensus 153 -~~~~~~~~~l~~---~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll-~~~d~~~~~~l~~l~-~~~v~i~~~ 226 (451)
T PRK07846 153 -YHTSDTIMRLPE---LPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL-RHLDDDISERFTELA-SKRWDVRLG 226 (451)
T ss_pred -EEchHHHhhhhh---cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc-cccCHHHHHHHHHHH-hcCeEEEeC
Confidence 235555544432 37999999999999999999999999999999998876 568888888877654 578999999
Q ss_pred ceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCcccc--ccCCceeeCCCcEEeCCCCCCCCCCeEEecccccc
Q psy2951 797 ANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYA 874 (1466)
Q Consensus 797 ~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~--~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~ 874 (1466)
+++++++.. ++. ..+.+.+|+++++|.|++|+|++|+++++ +..+++++++|+|.||+++||+.|+|||+|||+..
T Consensus 227 ~~v~~i~~~-~~~-v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~Ts~p~IyA~GD~~~~ 304 (451)
T PRK07846 227 RNVVGVSQD-GSG-VTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRTSAEGVFALGDVSSP 304 (451)
T ss_pred CEEEEEEEc-CCE-EEEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCcccCCCCEEEEeecCCC
Confidence 999999843 322 34667788899999999999999999885 67899999999999999999999999999999976
Q ss_pred CCcccCCceeeeccHHHHHHHHHHHHHHhccCCC----cCcccCeeeeeecCceeEEeeccCC------CC--ceeEec-
Q psy2951 875 PLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT----SLSTIPFFWTMLFGVGFRFAGYAAG------HT--QVDIVG- 941 (1466)
Q Consensus 875 ~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~------~~--~~~~~~- 941 (1466)
+. ..+.|.+||+++|+||++... .+..+|... +....+..+|+++. ++ .....-
T Consensus 305 ~~-----------l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~i--f~~p~ia~vGlte~~a~~~g~~~~~~~~~~~ 371 (451)
T PRK07846 305 YQ-----------LKHVANHEARVVQHNLLHPDDLIASDHRFVPAAV--FTHPQIASVGLTENEARAAGLDITVKVQNYG 371 (451)
T ss_pred cc-----------ChhHHHHHHHHHHHHHcCCCCccccCCCCCCeEE--ECCCCcEeEeCCHHHHHhcCCCEEEEEEecC
Confidence 54 346899999999999997521 245566432 33456777887652 11 000000
Q ss_pred -------ccccceEEEEEe--cCCeEEEEEeecCch
Q psy2951 942 -------DLEALKFTAYYS--NADKVLAILTVGMDP 968 (1466)
Q Consensus 942 -------~~~~~~~~~~~~--~~~~i~g~~~~g~~~ 968 (1466)
..+...|.|+++ ++++++|++++|.+.
T Consensus 372 ~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a 407 (451)
T PRK07846 372 DVAYGWAMEDTTGFVKLIADRDTGRLLGAHIIGPQA 407 (451)
T ss_pred cchhhhhCCCCceEEEEEEECCCCEEEEEEEECCCH
Confidence 112457899988 479999999999763
|
|
| >PRK13748 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=342.63 Aligned_cols=347 Identities=23% Similarity=0.346 Sum_probs=254.4
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCC----Cccch---------------hc--c-------c
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR----VKLSK---------------QL--D-------I 645 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~----~~~~~---------------~~--~-------~ 645 (1466)
..+||+||||||||++||..|+++|.+ |.++|++. +++.. +..++ .+ + .
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~--v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 173 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGAR--VTLIERGT-IGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTI 173 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCe--EEEEecCc-ceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCcc
Confidence 368999999999999999999999998 77777752 22110 00000 00 1 1
Q ss_pred Cccccccc------------CHhHhhhC-CcEEEEceEEEEeccccccEEEccCCC--EEecCEEEEcCCCCCCcCCCCC
Q psy2951 646 KADSILLR------------TEEFYKDN-DIHVIKGKKIISDSELNEKKIKLQDGT--SIDFTKIYLATGSSPRTISQAD 710 (1466)
Q Consensus 646 ~~~~~~~~------------~~~~~~~~-gv~~~~~~~v~~i~~~~~~~v~~~~~~--~~~~d~lviAtG~~~~~~~~~~ 710 (1466)
+.+.+..+ ....+.+. +|+++.++ +..+ +.....+.+.++. +++||+||||||++|..|+++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~-~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~- 250 (561)
T PRK13748 174 DRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHGE-ARFK-DDQTLIVRLNDGGERVVAFDRCLIATGASPAVPPIP- 250 (561)
T ss_pred CHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEE-EEEe-cCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCC-
Confidence 11111111 11223444 89999997 7777 7666677665653 699999999999999999999
Q ss_pred CCCcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcC
Q psy2951 711 GVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKG 790 (1466)
Q Consensus 711 g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~g 790 (1466)
|.+....+.+. +.... ...+++++|||+|++|+|+|..|+++|.+|+++.+.. .+ +.+++++.+.+.+.|++.|
T Consensus 251 g~~~~~~~~~~-~~~~~---~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~-~l-~~~d~~~~~~l~~~l~~~g 324 (561)
T PRK13748 251 GLKETPYWTST-EALVS---DTIPERLAVIGSSVVALELAQAFARLGSKVTILARST-LF-FREDPAIGEAVTAAFRAEG 324 (561)
T ss_pred CCCccceEccH-HHhhc---ccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc-cc-cccCHHHHHHHHHHHHHCC
Confidence 87632223222 22211 2347999999999999999999999999999999854 34 4578999999999999999
Q ss_pred cEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCccc--cccCCceeeCCCcEEeCCCCCCCCCCeEEe
Q psy2951 791 VKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAG 868 (1466)
Q Consensus 791 v~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t~~~~iya~ 868 (1466)
|++++++.+++++.. ++. ..+.++++ ++++|.||+|+|++||+.+ +++.|++++++|+|.||+++||+.|+|||+
T Consensus 325 I~i~~~~~v~~i~~~-~~~-~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~~~IyA~ 401 (561)
T PRK13748 325 IEVLEHTQASQVAHV-DGE-FVLTTGHG-ELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRTSVPHIYAA 401 (561)
T ss_pred CEEEcCCEEEEEEec-CCE-EEEEecCC-eEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCcccCCCCEEEe
Confidence 999999999999743 332 33555554 6999999999999999985 577899999999999999999999999999
Q ss_pred ccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCCcC--cccCeeeeeecCceeEEeeccCC------CCc--ee
Q psy2951 869 GDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSL--STIPFFWTMLFGVGFRFAGYAAG------HTQ--VD 938 (1466)
Q Consensus 869 GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~------~~~--~~ 938 (1466)
|||+..+... +.|..||++||.||++....+ ..+| +..+++..+..+|+++. ++- ..
T Consensus 402 GD~~~~~~~~-----------~~A~~~g~~aa~~i~g~~~~~~~~~~p--~~~~~~p~~a~vGlte~~a~~~g~~~~~~~ 468 (561)
T PRK13748 402 GDCTDQPQFV-----------YVAAAAGTRAAINMTGGDAALDLTAMP--AVVFTDPQVATVGYSEAEAHHDGIETDSRT 468 (561)
T ss_pred eecCCCccch-----------hHHHHHHHHHHHHHcCCCcccCCCCCC--eEEEccCCceeeeCCHHHHHHcCCCeEEEE
Confidence 9999766433 679999999999999865443 3344 33467777888888752 111 11
Q ss_pred Eec--------ccccceEEEEEe--cCCeEEEEEeecCch
Q psy2951 939 IVG--------DLEALKFTAYYS--NADKVLAILTVGMDP 968 (1466)
Q Consensus 939 ~~~--------~~~~~~~~~~~~--~~~~i~g~~~~g~~~ 968 (1466)
... ..+...|.|+++ ++++++|++++|...
T Consensus 469 ~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a 508 (561)
T PRK13748 469 LTLDNVPRALANFDTRGFIKLVIEEGSGRLIGVQAVAPEA 508 (561)
T ss_pred EecccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCH
Confidence 100 112467899988 479999999999763
|
|
| >TIGR03385 CoA_CoA_reduc CoA-disulfide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=331.95 Aligned_cols=352 Identities=22% Similarity=0.329 Sum_probs=278.1
Q ss_pred HHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcc--cC-cccccccCHh-HhhhCCcEEEEceEEEEeccccccEEEc
Q psy2951 609 TCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD--IK-ADSILLRTEE-FYKDNDIHVIKGKKIISDSELNEKKIKL 684 (1466)
Q Consensus 609 ~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~-~~~~~gv~~~~~~~v~~i~~~~~~~v~~ 684 (1466)
+||+.|++++.+.+|+++++++++.|....+..... .. .+++..+..+ ++.+.|++++.+++|+.+ +...+.+.+
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~i-d~~~~~v~~ 79 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVSFANCGLPYVIGGVIDDRNKLLAYTPEVFIKKRGIDVKTNHEVIEV-NDERQTVVV 79 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCceeEEcCCCCeEeccccCCHHHcccCCHHHHHHhcCCeEEecCEEEEE-ECCCCEEEE
Confidence 489999998878889999999987776654443322 11 2233444433 458889999989889999 877777776
Q ss_pred cC---CCEEe--cCEEEEcCCCCCCcCCCCCCCC--cEEEecCHHHHHhhcccC--CCCCcEEEECCChHHHHHHHHHhc
Q psy2951 685 QD---GTSID--FTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHI--TPESNVVVIGSSFIGMEAAAFCAS 755 (1466)
Q Consensus 685 ~~---~~~~~--~d~lviAtG~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~--~~~~~vvVvG~G~~g~e~A~~l~~ 755 (1466)
.+ +.++. ||+||||||++|..|+++ |.+ .++..+++.++..+...+ ..+++|+|||+|++|+|+|..|++
T Consensus 80 ~~~~~~~~~~~~yd~lIiATG~~p~~~~i~-G~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~ 158 (427)
T TIGR03385 80 RNNKTNETYEESYDYLILSPGASPIVPNIE-GINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRE 158 (427)
T ss_pred EECCCCCEEecCCCEEEECCCCCCCCCCCC-CcCCCCEEEECCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHh
Confidence 53 35677 999999999999999999 865 678888888877766554 357999999999999999999999
Q ss_pred cCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccC
Q psy2951 756 KVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLN 835 (1466)
Q Consensus 756 ~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 835 (1466)
.|.+|+++++.+.++.+.+++++.+.+.+.|++.||+++++..+++++.. +.+ +.+.+|+++++|.+|+|+|++|+
T Consensus 159 ~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~--~~~--v~~~~g~~i~~D~vi~a~G~~p~ 234 (427)
T TIGR03385 159 RGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGE--ERV--KVFTSGGVYQADMVILATGIKPN 234 (427)
T ss_pred CCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecC--CCE--EEEcCCCEEEeCEEEECCCccCC
Confidence 99999999999877556788899999999999999999999999999832 222 45667889999999999999999
Q ss_pred ccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCCcCccc-C
Q psy2951 836 TNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSLSTI-P 914 (1466)
Q Consensus 836 ~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~~~~~~-~ 914 (1466)
+++++.++++++++|+|.||++++|+.|+|||+|||+..+... .+.+..+++++.|.+||+++|+||++....++.. +
T Consensus 235 ~~~l~~~gl~~~~~G~i~vd~~~~t~~~~Vya~GD~~~~~~~~-~~~~~~~~~~~~A~~~g~~~a~ni~g~~~~~~~~~~ 313 (427)
T TIGR03385 235 SELAKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAESHNII-TKKPAWVPLAWGANKMGRIAGENIAGNDIEFKGVLG 313 (427)
T ss_pred HHHHHhcCcccCCCCCEEECCCcEeCCCCEEEeeeeEEeeecc-CCCceeeechHHHHHHHHHHHHHhcCCCCCCCCcce
Confidence 9999999999998999999999999999999999999877654 3444556788999999999999999876555433 2
Q ss_pred eeeeeecCceeEEeeccCC------CCce--eEec-------ccccceEEEEEe--cCCeEEEEEeecCc
Q psy2951 915 FFWTMLFGVGFRFAGYAAG------HTQV--DIVG-------DLEALKFTAYYS--NADKVLAILTVGMD 967 (1466)
Q Consensus 915 ~~~~~~~~~~~~~~g~~~~------~~~~--~~~~-------~~~~~~~~~~~~--~~~~i~g~~~~g~~ 967 (1466)
..+..+++.++..+|+++. .+-. .... ..++..+.|+++ ++++++|++++|..
T Consensus 314 ~~~~~~~~~~~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~ 383 (427)
T TIGR03385 314 TNITKFFDLTIASTGVTENEAKKLNIDYKTVFVKAKTHANYYPGNSPLHLKLIYEKDTRRILGAQAVGKE 383 (427)
T ss_pred eeEEEEcCeEEEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEEEEEEECCCCeEEEEEEEccc
Confidence 3345577888888887652 1111 1100 012345889888 46999999999987
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. |
| >PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=331.54 Aligned_cols=343 Identities=18% Similarity=0.263 Sum_probs=250.3
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCc----c-chhc------ccCcccc-----------cc
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK----L-SKQL------DIKADSI-----------LL 652 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~----~-~~~~------~~~~~~~-----------~~ 652 (1466)
.+||+||||||||++||..|+++|++ |+++|+++...+..+. . .+.+ ..+...+ ..
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~--V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKK--VALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRG 80 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCE--EEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999988 8888887532111111 1 1110 0111111 11
Q ss_pred cCHhHhhhCCcEEEEceEEEEeccccccEEEccC---CCEEecCEEEEcCCCCCCcCCCCCCCC---cEEEecCHHHHHh
Q psy2951 653 RTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQD---GTSIDFTKIYLATGSSPRTISQADGVN---KVFYLRTVEDANN 726 (1466)
Q Consensus 653 ~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~---~~~~~~d~lviAtG~~~~~~~~~~g~~---~~~~~~~~~~~~~ 726 (1466)
...+.+.+.+|+++.++ +..+ + .+++.+.. ..++.||+||||||++|+.|++| |.+ .++ +..++..
T Consensus 81 ~~~~~~~~~gV~~~~g~-~~~~-~--~~~v~v~~~~~~~~~~~d~vViATGs~~~~p~i~-G~~~~~~v~---~~~~~~~ 152 (438)
T PRK07251 81 KNYAMLAGSGVDLYDAE-AHFV-S--NKVIEVQAGDEKIELTAETIVINTGAVSNVLPIP-GLADSKHVY---DSTGIQS 152 (438)
T ss_pred HHHHHHHhCCCEEEEEE-EEEc-c--CCEEEEeeCCCcEEEEcCEEEEeCCCCCCCCCCC-CcCCCCcEE---chHHHhc
Confidence 22345667899999988 4444 3 44554432 24799999999999999999999 864 233 3334333
Q ss_pred hcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecC
Q psy2951 727 IAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNE 806 (1466)
Q Consensus 727 ~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~ 806 (1466)
+ ...+++|+|||+|++|+|+|..|++.|.+|+++++.+.++ +..++++.+.+.+.++++||++++++++++++..
T Consensus 153 ~---~~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-~~~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~- 227 (438)
T PRK07251 153 L---ETLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTIL-PREEPSVAALAKQYMEEDGITFLLNAHTTEVKND- 227 (438)
T ss_pred c---hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccC-CCCCHHHHHHHHHHHHHcCCEEEcCCEEEEEEec-
Confidence 3 2348899999999999999999999999999999998776 4468888889999999999999999999999843
Q ss_pred CCceEEEECCCCcEEecCEEEEccccccCccc--cccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCcee
Q psy2951 807 KNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNA 884 (1466)
Q Consensus 807 ~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~ 884 (1466)
++.+ .+. .+++++++|.||+|+|++|+++. ++..++.++++|++.+|+++||+.|+|||+|||+..+...
T Consensus 228 ~~~v-~v~-~~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~~t~~~~IyaiGD~~~~~~~~------ 299 (438)
T PRK07251 228 GDQV-LVV-TEDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQTSVPGVFAVGDVNGGPQFT------ 299 (438)
T ss_pred CCEE-EEE-ECCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCcccH------
Confidence 3222 233 45678999999999999999875 3456788888899999999999999999999998765443
Q ss_pred eeccHHHHHHHHHHHHHHhccCCC----cCcccCeeeeeecCceeEEeeccCC------CCcee--E--e--c----ccc
Q psy2951 885 SIGHYQLAQYHGRIAALNMVEKKT----SLSTIPFFWTMLFGVGFRFAGYAAG------HTQVD--I--V--G----DLE 944 (1466)
Q Consensus 885 ~~~~~~~A~~~g~~aA~~i~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~------~~~~~--~--~--~----~~~ 944 (1466)
+.|..||+.++.++++.+. .+..+|.. .+++..+..+|+++. .+-.. . . + ..+
T Consensus 300 -----~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~ 372 (438)
T PRK07251 300 -----YISLDDFRIVFGYLTGDGSYTLEDRGNVPTT--MFITPPLSQVGLTEKEAKEAGLPYAVKELLVAAMPRAHVNND 372 (438)
T ss_pred -----hHHHHHHHHHHHHHcCCCCccccccCCCCEE--EECCCceEeeeCCHHHHHhcCCCeEEEEEECCcchhhhhcCC
Confidence 6899999999999987532 23345532 357777888887642 11000 0 0 0 112
Q ss_pred cceEEEEEe--cCCeEEEEEeecCc
Q psy2951 945 ALKFTAYYS--NADKVLAILTVGMD 967 (1466)
Q Consensus 945 ~~~~~~~~~--~~~~i~g~~~~g~~ 967 (1466)
..++.|+++ ++++++|++++|..
T Consensus 373 ~~g~~kli~d~~~~~ilG~~~~g~~ 397 (438)
T PRK07251 373 LRGAFKVVVNTETKEILGATLFGEG 397 (438)
T ss_pred CcEEEEEEEECCCCEEEEEEEECCC
Confidence 355888888 46899999999975
|
|
| >PRK14727 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=333.54 Aligned_cols=347 Identities=22% Similarity=0.293 Sum_probs=251.9
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCc----cch----------------hcc-------cC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK----LSK----------------QLD-------IK 646 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~----~~~----------------~~~-------~~ 646 (1466)
.++|++||||||||+++|..|+++|.+ |+++|+...+++.... .++ .++ .+
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~--v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 92 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGAR--VTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSID 92 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCe--EEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCccC
Confidence 468999999999999999999999987 7777775322211000 000 000 01
Q ss_pred ccccc-------cc-----CHhHhhhC-CcEEEEceEEEEeccccccEEEccCCC--EEecCEEEEcCCCCCCcCCCCCC
Q psy2951 647 ADSIL-------LR-----TEEFYKDN-DIHVIKGKKIISDSELNEKKIKLQDGT--SIDFTKIYLATGSSPRTISQADG 711 (1466)
Q Consensus 647 ~~~~~-------~~-----~~~~~~~~-gv~~~~~~~v~~i~~~~~~~v~~~~~~--~~~~d~lviAtG~~~~~~~~~~g 711 (1466)
...+. .+ ....++.. +++++.++ +..+ +.....|.+.++. ++.||+||||||++|+.|+++ |
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~-a~f~-~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~i~-G 169 (479)
T PRK14727 93 RGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGY-ARFK-DGNTLVVRLHDGGERVLAADRCLIATGSTPTIPPIP-G 169 (479)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEE-EEEe-cCCEEEEEeCCCceEEEEeCEEEEecCCCCCCCCCC-C
Confidence 11110 00 12233333 89999988 6555 6655666666653 699999999999999999999 8
Q ss_pred CCcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCc
Q psy2951 712 VNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGV 791 (1466)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv 791 (1466)
.+....+.+ .+.... ...+++++|||+|++|+|+|..|++.|.+|+++.+. ..+ +.+++++.+.+.+.|++.||
T Consensus 170 ~~~~~~~~~-~~~l~~---~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~-~~l-~~~d~~~~~~l~~~L~~~GV 243 (479)
T PRK14727 170 LMDTPYWTS-TEALFS---DELPASLTVIGSSVVAAEIAQAYARLGSRVTILARS-TLL-FREDPLLGETLTACFEKEGI 243 (479)
T ss_pred cCccceecc-hHHhcc---ccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC-CCC-CcchHHHHHHHHHHHHhCCC
Confidence 752222222 222211 124799999999999999999999999999999885 444 45789999999999999999
Q ss_pred EEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCccc--cccCCceeeCCCcEEeCCCCCCCCCCeEEec
Q psy2951 792 KFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGG 869 (1466)
Q Consensus 792 ~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t~~~~iya~G 869 (1466)
++++++++++++..++ . ..+.++++ ++++|.||+|+|+.|++.+ ++..|++++++|+|.||+++||+.|+|||+|
T Consensus 244 ~i~~~~~V~~i~~~~~-~-~~v~~~~g-~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~Ts~~~IyA~G 320 (479)
T PRK14727 244 EVLNNTQASLVEHDDN-G-FVLTTGHG-ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMETSAPDIYAAG 320 (479)
T ss_pred EEEcCcEEEEEEEeCC-E-EEEEEcCC-eEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCeecCCCCEEEee
Confidence 9999999999974332 2 34455554 6999999999999999885 5677899999999999999999999999999
Q ss_pred cccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCCcC--cccCeeeeeecCceeEEeeccCC------CCc--eeE
Q psy2951 870 DIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSL--STIPFFWTMLFGVGFRFAGYAAG------HTQ--VDI 939 (1466)
Q Consensus 870 D~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~------~~~--~~~ 939 (1466)
||+..+.. .+.|..||+.||.||++....+ ..+| +..++...+..+|+++. ++- ...
T Consensus 321 D~~~~~~~-----------~~~A~~~G~~aa~~i~g~~~~~~~~~~p--~~~~~~p~ia~vGlte~~a~~~g~~~~~~~~ 387 (479)
T PRK14727 321 DCSDLPQF-----------VYVAAAAGSRAGINMTGGNATLDLSAMP--AVIFTDPQVATVGLSEAKAHLSGIETISRVL 387 (479)
T ss_pred ecCCcchh-----------hhHHHHHHHHHHHHHcCCCcccccccCC--cEEEecCceeeeeCCHHHHHHcCCceEEEEE
Confidence 99976553 3689999999999999865543 3444 33467777888888752 110 111
Q ss_pred ec--------ccccceEEEEEe--cCCeEEEEEeecCc
Q psy2951 940 VG--------DLEALKFTAYYS--NADKVLAILTVGMD 967 (1466)
Q Consensus 940 ~~--------~~~~~~~~~~~~--~~~~i~g~~~~g~~ 967 (1466)
.. .-.+..|.|+++ ++++++|++++|..
T Consensus 388 ~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~ 425 (479)
T PRK14727 388 TMENVPRALANFETDGFIKLVAEEGTRKLIGAQILAHE 425 (479)
T ss_pred EcccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCC
Confidence 10 112456899888 47999999999977
|
|
| >PRK09853 putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=352.25 Aligned_cols=378 Identities=21% Similarity=0.237 Sum_probs=258.2
Q ss_pred eCCCCCCCcccCCceecCCEEEccCCCc------------------------eEECCCCeeecCCCCCCCCeEEEEEEcC
Q psy2951 511 GTKCSHYGAPLVKGSLGDGRVRCPWHGA------------------------CFNIATGDIEDFPGMDSLPCYKVTIQND 566 (1466)
Q Consensus 511 ~~~C~H~~~~l~~g~~~~~~~~Cp~H~~------------------------~f~~~~G~~~~~p~~~~l~~~~v~i~~~ 566 (1466)
..+|++...|+..-...-..--||.|-- -|..-+|++|..||...++.-. .+
T Consensus 431 ~~~~~~~~~p~~~c~~aPC~~~CP~~~dIp~yi~li~~g~~~~A~~~I~~~nPlP~icGrVCph~Ce~~C~R~~----~d 506 (1019)
T PRK09853 431 ESRKVAEDLPLTDCYVAPCVTACPINQDIPEYIRLVGEGRYAEALELIYQRNALPAITGHICDHQCQYNCTRLD----YD 506 (1019)
T ss_pred ccccccccCCccCCCCCccccCCCCCCcHHHHHHHHHCCCHHHHHHHHHHhCChhhHhhCcCCchhHHHhcCCC----CC
Confidence 5556666655543333333445665532 4555679999989986433221 24
Q ss_pred eEEEEEcccchhccccccc---ccccc-CCCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchh
Q psy2951 567 DSVVVQARKDELKNKKRKL---PMAKL-SSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQ 642 (1466)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~ 642 (1466)
..+-+...++.+.+.+... .+..+ ...+.++|+|||||||||+||+.|+++|++ |+++|+.+.+++........
T Consensus 507 ~pV~I~~Lkr~a~d~~~~~~~~~~~~~~~~~tgKkVaIIGgGPAGLsAA~~Lar~G~~--VtV~Ek~~~~GG~lr~~IP~ 584 (1019)
T PRK09853 507 EAVNIRELKKVALEKGWDEYKQRWHKPAGIGSRKKVAVIGAGPAGLAAAYFLARAGHP--VTVFEREENAGGVVKNIIPQ 584 (1019)
T ss_pred CCeeccHHHHHHHhhHHHhcccccCCCCccCCCCcEEEECCCHHHHHHHHHHHHcCCe--EEEEecccccCcceeeeccc
Confidence 5666676777665542111 11112 235679999999999999999999999987 77888776544322111111
Q ss_pred cccCcccccccCHhHhhhCCcEEEEceEEEEeccccccEEEccCCCEEecCEEEEcCCCC-CCcCCCCCCCC-cEEEec-
Q psy2951 643 LDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSS-PRTISQADGVN-KVFYLR- 719 (1466)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~-~~~~~~~~g~~-~~~~~~- 719 (1466)
+ ..+.+++.+..+++.+.|++++.++.+ .+ .+.+.....||+||||||+. +..++++ |.+ +++...
T Consensus 585 ~-Rlp~evL~~die~l~~~GVe~~~gt~V-di--------~le~L~~~gYDaVILATGA~~~~~l~Ip-G~~~gV~sald 653 (1019)
T PRK09853 585 F-RIPAELIQHDIEFVKAHGVKFEFGCSP-DL--------TVEQLKNEGYDYVVVAIGADKNGGLKLE-GGNQNVIKALP 653 (1019)
T ss_pred c-cccHHHHHHHHHHHHHcCCEEEeCcee-EE--------EhhhheeccCCEEEECcCCCCCCCCCCC-CccCCceehHH
Confidence 1 123345556667788899999999865 22 22233456799999999987 4556677 654 343221
Q ss_pred CHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhcc-C-CeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccc
Q psy2951 720 TVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASK-V-KSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKA 797 (1466)
Q Consensus 720 ~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~-g-~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~ 797 (1466)
.+.+..........+++|+|||||++|+|+|..+.+. | .+|++++|++...++..+.+ +.+.+ ++||+++++.
T Consensus 654 fL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA~~eE----le~Al-eeGVe~~~~~ 728 (1019)
T PRK09853 654 FLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPAWREE----YEEAL-EDGVEFKELL 728 (1019)
T ss_pred HHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccccHHH----HHHHH-HcCCEEEeCC
Confidence 1222222333445699999999999999999988877 4 58999999874333433333 33333 5799999999
Q ss_pred eEEEEEecC--------------CCceEEEECCCCcEEecCEEEEccccccCccccccCCceeeCCCcEEeCCCCCCCCC
Q psy2951 798 NVSSFEKNE--------------KNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVP 863 (1466)
Q Consensus 798 ~v~~i~~~~--------------~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~ 863 (1466)
.+.++..++ +++...+..+++.++++|.||+|+|++|++++++..|++++++|++.||++++|+.|
T Consensus 729 ~p~~I~~dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntelle~~GL~ld~~G~I~VDetlqTs~p 808 (1019)
T PRK09853 729 NPESFDADGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELLKANGIPLDKKGWPVVDANGETSLT 808 (1019)
T ss_pred ceEEEEcCCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhHHHhcCccccCCCCEEeCCCcccCCC
Confidence 888886211 111122333445689999999999999999999888999999999999999999999
Q ss_pred CeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCC-cCcccCeeeeeec
Q psy2951 864 GVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT-SLSTIPFFWTMLF 921 (1466)
Q Consensus 864 ~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~-~~~~~~~~~~~~~ 921 (1466)
+|||+|||+..+.. +..|+.||+.||.+|++... .+...|+|++..+
T Consensus 809 gVFAaGD~a~Gp~t-----------vv~Ai~qGr~AA~nI~~~~~~~~~~~~~~~~~~~ 856 (1019)
T PRK09853 809 NVYMIGDVQRGPST-----------IVAAIADARRAADAILSREGIRSHQNDKYWNNVE 856 (1019)
T ss_pred CEEEEeccccCchH-----------HHHHHHHHHHHHHHHhhhcCCCcccccccccccc
Confidence 99999999876543 36899999999999998654 5667777776654
|
|
| >KOG0405|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=289.92 Aligned_cols=349 Identities=21% Similarity=0.293 Sum_probs=262.1
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCC----------CCCC-------------------CCCCc---cc
Q psy2951 593 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE----------NFLP-------------------YDRVK---LS 640 (1466)
Q Consensus 593 ~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~----------~~~~-------------------~~~~~---~~ 640 (1466)
...+|.+|||||.+|+++|++.+..|.+ +.++|.. .|.| |.... ..
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAk--v~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~ 95 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAK--VALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGS 95 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCce--EEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccC
Confidence 4479999999999999999999999988 5555543 1222 11100 00
Q ss_pred hhc---ccCcccccccCHh----HhhhCCcEEEEceEEEEeccccccEEEccCCC--EEecCEEEEcCCCCCCcCCCCCC
Q psy2951 641 KQL---DIKADSILLRTEE----FYKDNDIHVIKGKKIISDSELNEKKIKLQDGT--SIDFTKIYLATGSSPRTISQADG 711 (1466)
Q Consensus 641 ~~~---~~~~~~~~~~~~~----~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~--~~~~d~lviAtG~~~~~~~~~~g 711 (1466)
..+ ....+..+.++.. .+.+.+|+++.+. ...+ ++.+-.|...++. .+++.+++||||++|..|.|| |
T Consensus 96 fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~-a~f~-~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~PnIp-G 172 (478)
T KOG0405|consen 96 FDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGR-ARFV-SPGEVEVEVNDGTKIVYTAKHILIATGGRPIIPNIP-G 172 (478)
T ss_pred CcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeee-EEEc-CCCceEEEecCCeeEEEecceEEEEeCCccCCCCCC-c
Confidence 000 0122223333333 3445689999988 6666 7777777777764 378899999999999999999 8
Q ss_pred CCcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCc
Q psy2951 712 VNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGV 791 (1466)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv 791 (1466)
.+... +.+.+.++ ...+||++|||+|++|+|+|..++.+|.+++++.|.+..+ +.||+.++..+.+.|+..||
T Consensus 173 ~E~gi---dSDgff~L---ee~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvL-R~FD~~i~~~v~~~~~~~gi 245 (478)
T KOG0405|consen 173 AELGI---DSDGFFDL---EEQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVL-RGFDEMISDLVTEHLEGRGI 245 (478)
T ss_pred hhhcc---ccccccch---hhcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhh-cchhHHHHHHHHHHhhhcce
Confidence 77222 22232222 3359999999999999999999999999999999999888 78999999999999999999
Q ss_pred EEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCccc--cccCCceeeCCCcEEeCCCCCCCCCCeEEec
Q psy2951 792 KFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGG 869 (1466)
Q Consensus 792 ~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t~~~~iya~G 869 (1466)
++|.+++++++.+..++.. .+....+..-.+|.++||+|++|++.- ++..|++++++|.|.+|++.+||+|+||++|
T Consensus 246 nvh~~s~~~~v~K~~~g~~-~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~Tnvp~I~avG 324 (478)
T KOG0405|consen 246 NVHKNSSVTKVIKTDDGLE-LVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNTNVPSIWAVG 324 (478)
T ss_pred eecccccceeeeecCCCce-EEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccCCCCceEEec
Confidence 9999999999986655544 344445555569999999999999873 6889999999999999999999999999999
Q ss_pred cccccCCcccCCceeeeccHHHHHHHHHHHHHHhccC----CCcCcccCeeeeeecCce-eEEeeccCC-----CC--ce
Q psy2951 870 DIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEK----KTSLSTIPFFWTMLFGVG-FRFAGYAAG-----HT--QV 937 (1466)
Q Consensus 870 D~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~----~~~~~~~~~~~~~~~~~~-~~~~g~~~~-----~~--~~ 937 (1466)
|++..-. +.+.|+.+|+..|+.+++. +..|..+| +.+|..+ +..+|+++. +. ++
T Consensus 325 Dv~gk~~-----------LTPVAiaagr~la~rlF~~~~~~kldY~nVp---~vVFshP~igtVGLtE~EAiekyg~~~i 390 (478)
T KOG0405|consen 325 DVTGKIN-----------LTPVAIAAGRKLANRLFGGGKDTKLDYENVP---CVVFSHPPIGTVGLTEEEAIEKYGKGDI 390 (478)
T ss_pred cccCcEe-----------cchHHHhhhhhHHHHhhcCCCCCccccccCc---eEEEecCCcccccCCHHHHHHHhCccce
Confidence 9987644 3378999999999999973 23577888 4455543 555666542 11 11
Q ss_pred --eEe---------cccccceEEEEEe--cCCeEEEEEeecCch
Q psy2951 938 --DIV---------GDLEALKFTAYYS--NADKVLAILTVGMDP 968 (1466)
Q Consensus 938 --~~~---------~~~~~~~~~~~~~--~~~~i~g~~~~g~~~ 968 (1466)
+.+ ...++..++|++| ++++++|++++|.+.
T Consensus 391 ~vy~s~F~pm~~a~~~~k~kt~mKlvc~~~~eKVvG~hm~G~~s 434 (478)
T KOG0405|consen 391 KVYTSKFNPMKYAMSGRKEKTLMKLVCAGKSEKVVGVHMCGDDS 434 (478)
T ss_pred EEEecCCchhHhHhhcCCcceEEEEEEecCCCcEEEEEEecCCc
Confidence 111 1234667899999 789999999999985
|
|
| >TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-32 Score=332.07 Aligned_cols=379 Identities=25% Similarity=0.340 Sum_probs=264.4
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCC-Cccchh----------------cccCc-------ccc
Q psy2951 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR-VKLSKQ----------------LDIKA-------DSI 98 (1466)
Q Consensus 43 ~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~~-~~~~~~----------------~~~~~-------~~~ 98 (1466)
++||+||||||||++||..|++.|.++.|++...-....... +..++. +.... ..+
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 80 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEKEYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDWEKM 80 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCHHHH
Confidence 389999999999999999999999998887752111000000 000100 01100 000
Q ss_pred -----------cccChhhhhcCCeEEEeCceEEEeccccccEEEecCC-cEEecCEEEEccCCCCCCCCCCCCCCcEEEe
Q psy2951 99 -----------LLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDG-TSIDFTKIYLATGSSPRTISQADGVNKVFYL 166 (1466)
Q Consensus 99 -----------~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~-~~~~~d~lviAtG~~~~~~~~~~~~~~~~~~ 166 (1466)
......++++.+++++.++.... +.....+...++ .++.||+||+|||++|+.++..-+.... .+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~--~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~~~~~~~~~-~~ 157 (461)
T TIGR01350 81 QKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFL--DPGTVLVTGENGEETLTAKNIIIATGSRPRSLPGPFDFDGE-VV 157 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEc--cCCEEEEecCCCcEEEEeCEEEEcCCCCCCCCCCCCCCCCc-eE
Confidence 01112345567899999886643 333344444343 4799999999999999866532022221 22
Q ss_pred cCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEEcCce
Q psy2951 167 RTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKAN 246 (1466)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~ 246 (1466)
.+..+...+.. .+++++|||+|++|+|+|..+++.|.+|+++++.+.++ +.+++++.+.+.+.+++.||+++++++
T Consensus 158 ~~~~~~~~~~~---~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-~~~~~~~~~~~~~~l~~~gi~i~~~~~ 233 (461)
T TIGR01350 158 ITSTGALNLKE---VPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL-PGEDAEVSKVVAKALKKKGVKILTNTK 233 (461)
T ss_pred EcchHHhcccc---CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC-CCCCHHHHHHHHHHHHHcCCEEEeCCE
Confidence 34455544332 35799999999999999999999999999999988766 467889999999999999999999999
Q ss_pred EEEEEecCCCCeEEEEcCCC--cEEeccEEEEeeccccCcc--ccccCCceecCCccEEECCCCCcCCCCEEEecccccc
Q psy2951 247 VSSFEKNEKNDVTAANLDNG--TTIPADLVIVGIGTVLNTN--YLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYA 322 (1466)
Q Consensus 247 v~~i~~~~~~~~~~v~~~~g--~~i~~D~Vi~a~G~~p~~~--~l~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD~~~~ 322 (1466)
+.+++.++ +.+. +.+.+| +++++|.||+|+|++|++. +++..+++++.+|++.||++++|+.|+|||+|||+..
T Consensus 234 v~~i~~~~-~~v~-v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~IyaiGD~~~~ 311 (461)
T TIGR01350 234 VTAVEKND-DQVV-YENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYMRTNVPGIYAIGDVIGG 311 (461)
T ss_pred EEEEEEeC-CEEE-EEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCCcccCCCCEEEeeecCCC
Confidence 99997653 2333 444556 5799999999999999998 5788889999989999999999999999999999864
Q ss_pred cCccCCCCcceeccHHHHHHHHHHHHHHhcCCCC---CCCCCCcccccccceeeEEEEeecC------Cc----eEEEe-
Q psy2951 323 PLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT---SLSTIPFFWTMLFGVGFRFAGYAAG------HT----QVDIV- 388 (1466)
Q Consensus 323 ~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~---~~~~~p~~~s~~~~~~~~~~G~~~~------~~----~~~~~- 388 (1466)
+ ..+..|+.||+.+|.|+.+... ++..+|+.. ..+..+..+|.... .+ ...+.
T Consensus 312 ~-----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~--~~~~~~a~vG~~~~~a~~~g~~~~~~~~~~~~ 378 (461)
T TIGR01350 312 P-----------MLAHVASHEGIVAAENIAGKEPAPIDYDAVPSCI--YTDPEVASVGLTEEQAKEAGYDVKIGKFPFAA 378 (461)
T ss_pred c-----------ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCeEE--ecCCceEEEeCCHHHHHhCCCCeEEEEEeCcc
Confidence 3 3467899999999999997543 233444321 11122333333211 00 00100
Q ss_pred -----cccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 389 -----GDLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 389 -----g~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
-..+..+|.+++.+ +++|+|++++|. ++++..++ .+|+.+.+. +++.||+++|.+
T Consensus 379 ~~~~~~~~~~~g~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~-~ai~~~~t~~~l~~~~~~~P~~~e~~ 447 (461)
T TIGR01350 379 NGKALALGETDGFVKIIADKKTGEILGAHIIGPHATELISEAV-LAMELELTVEELAKTIHPHPTLSEAI 447 (461)
T ss_pred chHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhcCcccCCCHHHHH
Confidence 01235789988886 489999999998 44555555 899988876 788999999987
|
The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. |
| >PRK05976 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-32 Score=332.30 Aligned_cols=351 Identities=20% Similarity=0.268 Sum_probs=249.9
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCC----ccchh----------------cc-------cC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV----KLSKQ----------------LD-------IK 646 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~----~~~~~----------------~~-------~~ 646 (1466)
..+||+||||||||++||..|+++|++ |+++|+.. +++... ..++. ++ .+
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~--v~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 79 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLK--TALVEKGK-LGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALD 79 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCe--EEEEEccC-CCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccC
Confidence 468999999999999999999999998 77777752 221110 00000 00 01
Q ss_pred cccc-------cc----cCHhHhhhCCcEEEEceEEEEecccc-------ccEEEccCC--CEEecCEEEEcCCCCCCcC
Q psy2951 647 ADSI-------LL----RTEEFYKDNDIHVIKGKKIISDSELN-------EKKIKLQDG--TSIDFTKIYLATGSSPRTI 706 (1466)
Q Consensus 647 ~~~~-------~~----~~~~~~~~~gv~~~~~~~v~~i~~~~-------~~~v~~~~~--~~~~~d~lviAtG~~~~~~ 706 (1466)
...+ .. .....+++.+++++.++ +..+ +.. ...+.+.++ .++.||+||||||++|..+
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~-a~~i-~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~~ 157 (472)
T PRK05976 80 FAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGI-GRIL-GPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVEL 157 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEe-CCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCCC
Confidence 1111 11 11234566799999998 7777 766 566766666 5799999999999999765
Q ss_pred CCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHH
Q psy2951 707 SQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLF 786 (1466)
Q Consensus 707 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l 786 (1466)
+.. ..++.+.+ +..++..+. ..+++++|||+|++|+|+|..|++.|.+|+++++.++++ +.+++++.+.+.+.|
T Consensus 158 p~~-~~~~~~~~-~~~~~~~~~---~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il-~~~~~~~~~~l~~~l 231 (472)
T PRK05976 158 PGL-PFDGEYVI-SSDEALSLE---TLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL-PTEDAELSKEVARLL 231 (472)
T ss_pred CCC-CCCCceEE-cchHhhCcc---ccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC-CcCCHHHHHHHHHHH
Confidence 433 23332222 344444332 237999999999999999999999999999999998776 567899999999999
Q ss_pred HhcCcEEEccceEEEEEecCCCceEEEECCCC--cEEecCEEEEccccccCcccc--ccCCceeeCCCcEEeCCCCCCCC
Q psy2951 787 ESKGVKFVMKANVSSFEKNEKNDVTAANLDNG--TTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNV 862 (1466)
Q Consensus 787 ~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~~~~--~~~gl~~~~~G~i~vd~~~~t~~ 862 (1466)
+++||++++++++++++...++.+..+.+.+| +++++|.||+|+|.+|+++.+ +..++.. .+|++.||++++|+.
T Consensus 232 ~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~g~i~Vd~~l~ts~ 310 (472)
T PRK05976 232 KKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDV-EGGFIQIDDFCQTKE 310 (472)
T ss_pred HhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCcee-cCCEEEECCCcccCC
Confidence 99999999999999997422333444445566 379999999999999998753 4556655 468999999999999
Q ss_pred CCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCC-CcCcccCeeeeeecCceeEEeeccCC------CC
Q psy2951 863 PGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK-TSLSTIPFFWTMLFGVGFRFAGYAAG------HT 935 (1466)
Q Consensus 863 ~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~------~~ 935 (1466)
|+|||+|||+..+. .++.|..||+.+|.+|++.. ..++.....+..+++..+..+|+++. .+
T Consensus 311 ~~IyAiGD~~~~~~-----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vG~te~~a~~~g~~ 379 (472)
T PRK05976 311 RHIYAIGDVIGEPQ-----------LAHVAMAEGEMAAEHIAGKKPRPFDYAAIPACCYTDPEVASVGLTEEEAKEAGYD 379 (472)
T ss_pred CCEEEeeecCCCcc-----------cHHHHHHHHHHHHHHHcCCCCCCCCCCCCCEEEECcCceEEEeCCHHHHHHcCCC
Confidence 99999999986443 34789999999999999865 33332222233356777777777642 11
Q ss_pred --ceeEec--------ccccceEEEEEe--cCCeEEEEEeecCc
Q psy2951 936 --QVDIVG--------DLEALKFTAYYS--NADKVLAILTVGMD 967 (1466)
Q Consensus 936 --~~~~~~--------~~~~~~~~~~~~--~~~~i~g~~~~g~~ 967 (1466)
.....- ..++..|+|+++ ++++++|++++|.+
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~ 423 (472)
T PRK05976 380 VKVGKFPFAANGKALTYGESDGFVKVVADRDTHDILGVQAVGPH 423 (472)
T ss_pred EEEEEEECCcchhhhhcCCCceEEEEEEECCCCEEEEEEEECCC
Confidence 000100 112466889888 46899999999976
|
|
| >PRK06115 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-32 Score=328.17 Aligned_cols=347 Identities=23% Similarity=0.292 Sum_probs=243.6
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCC----Cccchh------------------ccc------C
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR----VKLSKQ------------------LDI------K 646 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~----~~~~~~------------------~~~------~ 646 (1466)
.+||+||||||||++||..++++|++ |+++|+...+++.- +..++. ++. +
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~--V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~ 80 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLK--VACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLN 80 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCe--EEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccC
Confidence 48999999999999999999999998 78888633222211 000000 000 0
Q ss_pred ccccc-----------ccCHhHhhhCCcEEEEceEEEEeccccccEEEccCCC--EEecCEEEEcCCCCCCcCCCCCCCC
Q psy2951 647 ADSIL-----------LRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGT--SIDFTKIYLATGSSPRTISQADGVN 713 (1466)
Q Consensus 647 ~~~~~-----------~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~--~~~~d~lviAtG~~~~~~~~~~g~~ 713 (1466)
...+. ......+++.+|+++.++ .... +.....+...++. +++||+||||||++|.. +| |.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a~~~-~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~--ip-g~~ 155 (466)
T PRK06115 81 LAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGW-GRLD-GVGKVVVKAEDGSETQLEAKDIVIATGSEPTP--LP-GVT 155 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEc-cCCEEEEEcCCCceEEEEeCEEEEeCCCCCCC--CC-CCC
Confidence 11111 111223455689999887 4333 4444445555553 69999999999999853 44 543
Q ss_pred --cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCc
Q psy2951 714 --KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGV 791 (1466)
Q Consensus 714 --~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv 791 (1466)
+...+ +..++..+ ...+++++|||+|++|+|+|..+++.|.+||++++.++++ +.+++++.+.+.+.|++.||
T Consensus 156 ~~~~~~~-~~~~~~~~---~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il-~~~d~~~~~~l~~~l~~~gV 230 (466)
T PRK06115 156 IDNQRII-DSTGALSL---PEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC-PGTDTETAKTLQKALTKQGM 230 (466)
T ss_pred CCCCeEE-CHHHHhCC---ccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC-CCCCHHHHHHHHHHHHhcCC
Confidence 33333 33444332 2358999999999999999999999999999999998877 46889999999999999999
Q ss_pred EEEccceEEEEEecCCCceEEEEC---CCCcEEecCEEEEccccccCccc--cccCCceeeCCCcEEeCCCCCCCCCCeE
Q psy2951 792 KFVMKANVSSFEKNEKNDVTAANL---DNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVY 866 (1466)
Q Consensus 792 ~~~~~~~v~~i~~~~~~~~~~v~~---~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t~~~~iy 866 (1466)
++++++++++++..+++....+.. .+++++++|.|++++|++|++++ ++..++.++++| +.+|++++|+.|+||
T Consensus 231 ~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G-~~vd~~~~Ts~~~Iy 309 (466)
T PRK06115 231 KFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRG-MLANDHHRTSVPGVW 309 (466)
T ss_pred EEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCC-EEECCCeecCCCCEE
Confidence 999999999998433322122221 22457999999999999999885 466788888777 678999999999999
Q ss_pred EeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCC--cCcccCeeeeeecCceeEEeeccCC------CCcee
Q psy2951 867 AGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT--SLSTIPFFWTMLFGVGFRFAGYAAG------HTQVD 938 (1466)
Q Consensus 867 a~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~------~~~~~ 938 (1466)
|+|||+..+. +++.|.+||+++|+||++... .++.+|.+. +....+..+|+++. .+-..
T Consensus 310 A~GD~~~~~~-----------la~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~--~t~p~ia~vGlte~~a~~~g~~~~~ 376 (466)
T PRK06115 310 VIGDVTSGPM-----------LAHKAEDEAVACIERIAGKAGEVNYGLIPGVI--YTRPEVATVGKTEEQLKAEGRAYKV 376 (466)
T ss_pred EeeecCCCcc-----------cHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEE--ECCcccEEeeCCHHHHHHCCCCEEE
Confidence 9999987543 457999999999999998643 234566432 23455677777642 11000
Q ss_pred Ee----c------ccccceEEEEEe--cCCeEEEEEeecCc
Q psy2951 939 IV----G------DLEALKFTAYYS--NADKVLAILTVGMD 967 (1466)
Q Consensus 939 ~~----~------~~~~~~~~~~~~--~~~~i~g~~~~g~~ 967 (1466)
.. . ..+...|+|+++ ++++++|++++|..
T Consensus 377 ~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~ 417 (466)
T PRK06115 377 GKFPFTANSRAKINHETEGFAKILADARTDEVLGVHMVGPS 417 (466)
T ss_pred EEEecccChhhHhcCCCceEEEEEEECCCCEEEEEEEECCC
Confidence 00 0 112457899988 46899999999975
|
|
| >TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-33 Score=328.80 Aligned_cols=291 Identities=19% Similarity=0.270 Sum_probs=237.4
Q ss_pred cEEEECCchHHHHHHHHHHhc-CCCCcEEEEcCCCCCCCCCCCCchhhc--cCcccccccChhhhccCCcEEEcCCeEEE
Q psy2951 1068 TFIVVGGGPSGATCVETLRQN-GFTGKLYFITDENFLPYDRVKLSKQLD--IKADSILLRTEEFYKDNDIHVIKGKKIIS 1144 (1466)
Q Consensus 1068 ~vvIVG~G~aGl~aA~~L~~~-g~~~~i~li~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 1144 (1466)
+|||||||+||+.+|.+|+++ ....+|+|||++++.+|.+. ++.... ...+++.....+++++.+++++.+. |+.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~-v~~ 78 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGM-LPGMIAGHYSLDEIRIDLRRLARQAGARFVIAE-ATG 78 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccch-hhHHHheeCCHHHhcccHHHHHHhcCCEEEEEE-EEE
Confidence 589999999999999999765 44569999999999888753 333322 2344555555667778899998874 999
Q ss_pred eecCCCCeEEecCCcEEecCeEEEecCCCCCcCCCCCCCC-cEEEecCHHHHHh----hhccc---CCCCeEEEEcCCHH
Q psy2951 1145 DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-KVFYLRTVEDANN----IAPHI---TPESNVVVIGSSFI 1216 (1466)
Q Consensus 1145 i~d~~~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~-~v~~~~~~~~~~~----l~~~~---~~~~~vvVvG~g~~ 1216 (1466)
| |++++.|.+++|+++.||+||||||++|+.+++| |.. +++.+++++++.+ +.+.. ..+++++|||+|++
T Consensus 79 i-d~~~~~V~~~~g~~~~yD~LviAtG~~~~~~~i~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~ 156 (364)
T TIGR03169 79 I-DPDRRKVLLANRPPLSYDVLSLDVGSTTPLSGVE-GAADLAVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAA 156 (364)
T ss_pred E-ecccCEEEECCCCcccccEEEEccCCCCCCCCCC-cccccccccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHH
Confidence 9 9999999999999999999999999999999999 855 7788888888776 33332 24679999999999
Q ss_pred HHHHHHHHhc----CC--CeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCC
Q psy2951 1217 GMEAAAFCAS----KV--KSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGT 1290 (1466)
Q Consensus 1217 g~e~a~~l~~----~g--~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~ 1290 (1466)
|+|+|..|++ +| .+|+++ +.+.++. .+++++...+.+.++++||++++++.+++++ ++ .+.+.+|+
T Consensus 157 g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~-~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~--~~----~v~~~~g~ 228 (364)
T TIGR03169 157 GVEIALALRRRLPKRGLRGQVTLI-AGASLLP-GFPAKVRRLVLRLLARRGIEVHEGAPVTRGP--DG----ALILADGR 228 (364)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEE-eCCcccc-cCCHHHHHHHHHHHHHCCCEEEeCCeeEEEc--CC----eEEeCCCC
Confidence 9999998875 34 589999 5555554 5778889999999999999999999999986 22 37788999
Q ss_pred eeecCEEEEeeccccCccccccCCceeeCCCeEEeCCCccc-cCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHH
Q psy2951 1291 TIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLET-NVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRI 1369 (1466)
Q Consensus 1291 ~i~~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t-~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~ 1369 (1466)
++++|.|++++|..|+ .++...++.++.+|++.||++++| ++|+|||+|||+..+.... ..+...|..||++
T Consensus 229 ~i~~D~vi~a~G~~p~-~~l~~~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~~------~~~~~~A~~~g~~ 301 (364)
T TIGR03169 229 TLPADAILWATGARAP-PWLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITDAPR------PKAGVYAVRQAPI 301 (364)
T ss_pred EEecCEEEEccCCChh-hHHHHcCCCcCCCCeEEECCccccCCCCCEEEeeeeeecCCCCC------CCchHHHHHhHHH
Confidence 9999999999999998 466677888888899999999998 8999999999998754211 1234679999999
Q ss_pred HHHHhcCC
Q psy2951 1370 AALNMVEK 1377 (1466)
Q Consensus 1370 aa~~i~g~ 1377 (1466)
+|+||+..
T Consensus 302 ~a~ni~~~ 309 (364)
T TIGR03169 302 LAANLRAS 309 (364)
T ss_pred HHHHHHHH
Confidence 99999853
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. |
| >PRK07818 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=327.86 Aligned_cols=344 Identities=24% Similarity=0.331 Sum_probs=243.0
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC---------CCCCCCCc----cchh-------cccC------cc
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN---------FLPYDRVK----LSKQ-------LDIK------AD 648 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~---------~~~~~~~~----~~~~-------~~~~------~~ 648 (1466)
.+||+||||||||++||..|+++|.+ |+++|++. +.|..... +... ++.. ..
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~--V~lie~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~ 81 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLK--TAVVEKKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISGEVTFDYG 81 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCe--EEEEecCCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCcCcccCHH
Confidence 48999999999999999999999988 77777752 11110000 0000 0000 00
Q ss_pred ccccc-----------CHhHhhhCCcEEEEceEEEEeccccccEEEccCC--CEEecCEEEEcCCCCCCcCCCCCCCC--
Q psy2951 649 SILLR-----------TEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQADGVN-- 713 (1466)
Q Consensus 649 ~~~~~-----------~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~--~~~~~d~lviAtG~~~~~~~~~~g~~-- 713 (1466)
.+..+ ....++..+|+.+.++ ...+ +.....+...++ .+++||+||||||++|+.| | |.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~-~~~~-~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~--p-g~~~~ 156 (466)
T PRK07818 82 AAFDRSRKVAEGRVKGVHFLMKKNKITEIHGY-GTFT-DANTLEVDLNDGGTETVTFDNAIIATGSSTRLL--P-GTSLS 156 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEc-CCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCC--C-CCCCC
Confidence 00000 0112234578887765 4444 444444544444 3799999999999999865 3 433
Q ss_pred -cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcE
Q psy2951 714 -KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVK 792 (1466)
Q Consensus 714 -~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~ 792 (1466)
.++ +..+.... ...+++++|||+|++|+|+|..|++.|.+|+++++.++++ +.+++++...+.+.|+++||+
T Consensus 157 ~~v~---~~~~~~~~---~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l-~~~d~~~~~~l~~~l~~~gV~ 229 (466)
T PRK07818 157 ENVV---TYEEQILS---RELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL-PNEDAEVSKEIAKQYKKLGVK 229 (466)
T ss_pred CcEE---chHHHhcc---ccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC-CccCHHHHHHHHHHHHHCCCE
Confidence 233 22322111 1247999999999999999999999999999999998877 457899999999999999999
Q ss_pred EEccceEEEEEecCCCceEEEEC--CCC--cEEecCEEEEccccccCccc--cccCCceeeCCCcEEeCCCCCCCCCCeE
Q psy2951 793 FVMKANVSSFEKNEKNDVTAANL--DNG--TTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVY 866 (1466)
Q Consensus 793 ~~~~~~v~~i~~~~~~~~~~v~~--~~g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t~~~~iy 866 (1466)
+++++++++++.. ++.+ .+.+ .+| +++++|.||+|+|++|++++ ++..|++++++|+|.+|+++||+.|+||
T Consensus 230 i~~~~~v~~i~~~-~~~~-~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~p~Iy 307 (466)
T PRK07818 230 ILTGTKVESIDDN-GSKV-TVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRTNVPHIY 307 (466)
T ss_pred EEECCEEEEEEEe-CCeE-EEEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCcccCCCCEE
Confidence 9999999999843 2222 3333 255 47999999999999999885 5788999988899999999999999999
Q ss_pred EeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCC----cCcccCeeeeeecCceeEEeeccCC------CC-
Q psy2951 867 AGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT----SLSTIPFFWTMLFGVGFRFAGYAAG------HT- 935 (1466)
Q Consensus 867 a~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~------~~- 935 (1466)
|+|||+..+. .++.|..||++||.||++... .+..+|.. .++++.+..+|+++. ++
T Consensus 308 AiGD~~~~~~-----------l~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~--~~~~p~~a~vGlte~~a~~~g~~~ 374 (466)
T PRK07818 308 AIGDVTAKLQ-----------LAHVAEAQGVVAAETIAGAETLELGDYRMMPRA--TFCQPQVASFGLTEEQAREEGYDV 374 (466)
T ss_pred EEeecCCCcc-----------cHhHHHHHHHHHHHHHcCCCCCccCccCCCCeE--EECCCCeEEEeCCHHHHHhCCCcE
Confidence 9999986432 457899999999999998642 23445532 245677888887652 11
Q ss_pred -ceeEe--c------ccccceEEEEEe--cCCeEEEEEeecCc
Q psy2951 936 -QVDIV--G------DLEALKFTAYYS--NADKVLAILTVGMD 967 (1466)
Q Consensus 936 -~~~~~--~------~~~~~~~~~~~~--~~~~i~g~~~~g~~ 967 (1466)
..... . ..+...|.|+++ ++++++|++++|..
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~g~~Klv~~~~~~~ilG~~~vg~~ 417 (466)
T PRK07818 375 KVAKFPFTANGKAHGLGDPTGFVKLVADAKYGELLGGHLIGPD 417 (466)
T ss_pred EEEEEECCccchhhhcCCCCeEEEEEEECCCCeEEEEEEECCC
Confidence 01110 0 112467899988 46899999999975
|
|
| >TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-32 Score=326.62 Aligned_cols=347 Identities=18% Similarity=0.259 Sum_probs=247.5
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC--------CCCCCC----Cccch----------------hcccC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN--------FLPYDR----VKLSK----------------QLDIK 646 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~--------~~~~~~----~~~~~----------------~~~~~ 646 (1466)
.+|++||||||||+.||..+++.|.+ |.++|+.. .+++.- +..++ .++..
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~--v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~ 79 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAK--VMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWN 79 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCe--EEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcc
Confidence 47999999999999999999999998 77777521 111100 00000 00111
Q ss_pred --------cccc-----------cccCHhHhhhCCcEEEEceEEEEeccccccEEEccCC--CEEecCEEEEcCCCCCCc
Q psy2951 647 --------ADSI-----------LLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRT 705 (1466)
Q Consensus 647 --------~~~~-----------~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~--~~~~~d~lviAtG~~~~~ 705 (1466)
...+ .......++..||+++.+. ...+ +.....+...++ .+++||+||||||++|+.
T Consensus 80 ~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~-a~f~-~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~ 157 (484)
T TIGR01438 80 VEETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAY-AEFV-DKHRIKATNKKGKEKIYSAERFLIATGERPRY 157 (484)
T ss_pred cCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEE-EEEc-CCCEEEEeccCCCceEEEeCEEEEecCCCCCC
Confidence 0000 1112234667799999998 6666 555444433333 379999999999999999
Q ss_pred CCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHH
Q psy2951 706 ISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKL 785 (1466)
Q Consensus 706 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~ 785 (1466)
|++| |.+.. ..+.++...+. ..+++++|||+|++|+|+|..|+++|.+||++.+. .++ +.+++++.+.+.+.
T Consensus 158 p~ip-G~~~~--~~~~~~~~~~~---~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l-~~~d~~~~~~l~~~ 229 (484)
T TIGR01438 158 PGIP-GAKEL--CITSDDLFSLP---YCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILL-RGFDQDCANKVGEH 229 (484)
T ss_pred CCCC-Cccce--eecHHHhhccc---ccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-ccc-cccCHHHHHHHHHH
Confidence 9999 86422 12344443332 24789999999999999999999999999999974 444 67899999999999
Q ss_pred HHhcCcEEEccceEEEEEecCCCceEEEECCCC---cEEecCEEEEccccccCccc--cccCCceeeC-CCcEEeCCCCC
Q psy2951 786 FESKGVKFVMKANVSSFEKNEKNDVTAANLDNG---TTIPADLVIVGIGTVLNTNY--LDGKGVELNG-QKAVVVNEYLE 859 (1466)
Q Consensus 786 l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g---~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~-~G~i~vd~~~~ 859 (1466)
|+++||+++++..+.+++..+ +. ..+.+.++ +++++|.|++|+|++||+++ ++..|+++++ +|+|.||+++|
T Consensus 230 L~~~gV~i~~~~~v~~v~~~~-~~-~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~~ 307 (484)
T TIGR01438 230 MEEHGVKFKRQFVPIKVEQIE-AK-VKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEEQ 307 (484)
T ss_pred HHHcCCEEEeCceEEEEEEcC-Ce-EEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCCCcc
Confidence 999999999999999987432 22 34555554 47999999999999999986 5688898875 48999999999
Q ss_pred CCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCC---CcCcccCeeeeeecCceeEEeeccCCC--
Q psy2951 860 TNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK---TSLSTIPFFWTMLFGVGFRFAGYAAGH-- 934 (1466)
Q Consensus 860 t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~-- 934 (1466)
|+.|+|||+|||+.... ..++.|.+||+.+|+||++.. ..++.+|.. .++.+.+..+|+++..
T Consensus 308 Ts~p~IyA~GDv~~~~~----------~l~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~--i~~~p~ia~vGlte~~a~ 375 (484)
T TIGR01438 308 TNVPYIYAVGDILEDKQ----------ELTPVAIQAGRLLAQRLFSGSTVICDYENVPTT--VFTPLEYGACGLSEEKAV 375 (484)
T ss_pred cCCCCEEEEEEecCCCc----------cchHHHHHHHHHHHHHHhcCCCcccccccCCeE--EeCCCceeeecCCHHHHH
Confidence 99999999999986321 134789999999999999743 235556643 3455667788876521
Q ss_pred -----CceeEe-cc------------cccceEEEEEe-c--CCeEEEEEeecCc
Q psy2951 935 -----TQVDIV-GD------------LEALKFTAYYS-N--ADKVLAILTVGMD 967 (1466)
Q Consensus 935 -----~~~~~~-~~------------~~~~~~~~~~~-~--~~~i~g~~~~g~~ 967 (1466)
...... .. .....|.|+++ + +++++|++++|.+
T Consensus 376 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~t~~ILG~~ivg~~ 429 (484)
T TIGR01438 376 EKFGEENIEVFHSYFWPLEWTIPSRDNSNKCYAKAVCNRKENERVVGFHVVGPN 429 (484)
T ss_pred HhcCCCcEEEEEeecchhhhHhhCCCccCCcEEEEEEecCCCCeEEEEEEECCC
Confidence 111100 00 01346888876 2 5899999999976
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. |
| >PRK06912 acoL dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=324.63 Aligned_cols=344 Identities=22% Similarity=0.329 Sum_probs=248.0
Q ss_pred eEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCC---CCCccch----------------hcc---------cCcc
Q psy2951 597 TFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY---DRVKLSK----------------QLD---------IKAD 648 (1466)
Q Consensus 597 ~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~---~~~~~~~----------------~~~---------~~~~ 648 (1466)
+|+||||||||++||..|++.|.+ |+++|++...+- .-+..++ .++ .+..
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~--V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 79 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKN--VTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWK 79 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCc--EEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHH
Confidence 899999999999999999999988 888887642110 0000000 001 1111
Q ss_pred ccccc-----------CHhHhhhCCcEEEEceEEEEeccccccEEEccCC-CEEecCEEEEcCCCCCCcCCCCCCCCcEE
Q psy2951 649 SILLR-----------TEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDG-TSIDFTKIYLATGSSPRTISQADGVNKVF 716 (1466)
Q Consensus 649 ~~~~~-----------~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~-~~~~~d~lviAtG~~~~~~~~~~g~~~~~ 716 (1466)
.+..+ ....+++.+++++.++ +..+ +.....+..+++ .+++||+||||||++|+.|+++ +.+...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a~~~-~~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p~~-~~~~~~ 156 (458)
T PRK06912 80 QMQARKSQIVTQLVQGIQYLMKKNKIKVIQGK-ASFE-TDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELPFA-PFDGKW 156 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEE-EEEc-cCCEEEEeeCCCcEEEECCEEEEeCCCCCCCCCCC-CCCCCe
Confidence 11111 1223456699999998 6666 665556655455 3799999999999999988877 655322
Q ss_pred EecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEcc
Q psy2951 717 YLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMK 796 (1466)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~ 796 (1466)
.+ +..++..+. ..+++++|||+|++|+|+|..|++.|.+|+++++.+.++ +.+++++.+.+.+.|+++||+++++
T Consensus 157 v~-~~~~~~~~~---~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll-~~~d~e~~~~l~~~L~~~GI~i~~~ 231 (458)
T PRK06912 157 II-NSKHAMSLP---SIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL-PGEDEDIAHILREKLENDGVKIFTG 231 (458)
T ss_pred EE-cchHHhCcc---ccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC-ccccHHHHHHHHHHHHHCCCEEEEC
Confidence 22 334443332 347899999999999999999999999999999998776 4578899999999999999999999
Q ss_pred ceEEEEEecCCCceEEEECCCC--cEEecCEEEEccccccCccc--cccCCceeeCCCcEEeCCCCCCCCCCeEEecccc
Q psy2951 797 ANVSSFEKNEKNDVTAANLDNG--TTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA 872 (1466)
Q Consensus 797 ~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~ 872 (1466)
+++++++.. +. ...+.. ++ .++++|.|++|+|++|++++ ++..|+.++++| +.||+++||+.|+|||+|||+
T Consensus 232 ~~V~~i~~~-~~-~v~~~~-~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~g-i~Vd~~~~ts~~~VyA~GD~~ 307 (458)
T PRK06912 232 AALKGLNSY-KK-QALFEY-EGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKG-ISVNEHMQTNVPHIYACGDVI 307 (458)
T ss_pred CEEEEEEEc-CC-EEEEEE-CCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCC-EEeCCCeecCCCCEEEEeecC
Confidence 999999843 22 222332 33 37999999999999999875 467788888776 999999999999999999998
Q ss_pred ccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCCc--CcccCeeeeeecCceeEEeeccCCCC-----ceeEe-----
Q psy2951 873 YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS--LSTIPFFWTMLFGVGFRFAGYAAGHT-----QVDIV----- 940 (1466)
Q Consensus 873 ~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~----- 940 (1466)
..+. .++.|..||++||.+|++.... +..+|... +++..+..+|+++... +....
T Consensus 308 ~~~~-----------la~~A~~~g~~aa~~~~g~~~~~~~~~~p~~v--~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~ 374 (458)
T PRK06912 308 GGIQ-----------LAHVAFHEGTTAALHASGEDVKVNYHAVPRCI--YTSPEIASVGLTEKQAREQYGDIRIGEFPFT 374 (458)
T ss_pred CCcc-----------cHHHHHHHHHHHHHHHcCCCCCCCcCCCCeEE--ecCchhEEeeCCHHHHHHCCCCeEEEEEecC
Confidence 6443 4578999999999999986543 34566322 4456677788765211 11100
Q ss_pred c------ccccceEEEEEe--cCCeEEEEEeecCc
Q psy2951 941 G------DLEALKFTAYYS--NADKVLAILTVGMD 967 (1466)
Q Consensus 941 ~------~~~~~~~~~~~~--~~~~i~g~~~~g~~ 967 (1466)
. ...+..|.|+++ ++++++|+++++.+
T Consensus 375 ~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~ 409 (458)
T PRK06912 375 ANGKALIIGEQTGKVKVIVEPKYQEIVGISIIGPR 409 (458)
T ss_pred cchhHhhcCCCceEEEEEEECCCCEEEEEEEECCC
Confidence 0 112456899988 46899999999976
|
|
| >TIGR03452 mycothione_red mycothione reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-31 Score=319.40 Aligned_cols=344 Identities=21% Similarity=0.325 Sum_probs=248.4
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC---------CCCCCC----------------Cccc-hhcccCcc
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN---------FLPYDR----------------VKLS-KQLDIKAD 648 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~---------~~~~~~----------------~~~~-~~~~~~~~ 648 (1466)
++|++|||+||||..||. +.+|.+ |.++|++. |.|-.. ..+. .....+..
T Consensus 2 ~yD~vvIG~G~~g~~aa~--~~~g~~--V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~ 77 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDP--RFADKR--IAIVEKGTFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRWP 77 (452)
T ss_pred CcCEEEECCCHHHHHHHH--HHCCCe--EEEEeCCCCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCHH
Confidence 589999999999999864 446887 77787752 222110 0000 00000111
Q ss_pred ccccc-----------C-HhHh---hhCCcEEEEceEEEEeccccccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCC
Q psy2951 649 SILLR-----------T-EEFY---KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN 713 (1466)
Q Consensus 649 ~~~~~-----------~-~~~~---~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~ 713 (1466)
.+..+ . .... ++.||+++.++. ... +.++|.+.++.+++||+||||||++|..|++. +.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~-~~~---~~~~V~~~~g~~~~~d~lIiATGs~p~~p~~~-~~~ 152 (452)
T TIGR03452 78 DIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHA-RFV---GPRTLRTGDGEEITGDQIVIAAGSRPYIPPAI-ADS 152 (452)
T ss_pred HHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEE-EEe---cCCEEEECCCcEEEeCEEEEEECCCCCCCCCC-CCC
Confidence 11111 1 1111 236999999983 333 45677777788899999999999999988755 333
Q ss_pred cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEE
Q psy2951 714 KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKF 793 (1466)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~ 793 (1466)
+.. +.+.+++..+.+ .+++++|||+|++|+|+|..|++.|.+|+++++.+.++ +.+++++.+.+.+.+ +.||++
T Consensus 153 ~~~-~~~~~~~~~l~~---~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll-~~~d~~~~~~l~~~~-~~gI~i 226 (452)
T TIGR03452 153 GVR-YHTNEDIMRLPE---LPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLL-RHLDEDISDRFTEIA-KKKWDI 226 (452)
T ss_pred CCE-EEcHHHHHhhhh---cCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccc-cccCHHHHHHHHHHH-hcCCEE
Confidence 332 346666665543 37999999999999999999999999999999998765 467888888887655 568999
Q ss_pred EccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCccc--cccCCceeeCCCcEEeCCCCCCCCCCeEEeccc
Q psy2951 794 VMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 871 (1466)
Q Consensus 794 ~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~ 871 (1466)
+++.++++++..+ +. ..+.+.+|+++++|.|++++|++|++++ ++..|++++++|+|.||+++||+.|+|||+|||
T Consensus 227 ~~~~~V~~i~~~~-~~-v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~ 304 (452)
T TIGR03452 227 RLGRNVTAVEQDG-DG-VTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRTSARGVWALGDV 304 (452)
T ss_pred EeCCEEEEEEEcC-Ce-EEEEEcCCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCcccCCCCEEEeecc
Confidence 9999999998433 23 3466677889999999999999999987 466799999999999999999999999999999
Q ss_pred cccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCC----cCcccCeeeeeecCceeEEeeccCC------CCceeEe-
Q psy2951 872 AYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT----SLSTIPFFWTMLFGVGFRFAGYAAG------HTQVDIV- 940 (1466)
Q Consensus 872 ~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~------~~~~~~~- 940 (1466)
+..+.. .+.|.+||+++|+||++... .+..+|.. .++.+.+.++|+++. ++-....
T Consensus 305 ~~~~~l-----------~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~--i~t~p~ia~vGlte~ea~~~g~~~~~~~~ 371 (452)
T TIGR03452 305 SSPYQL-----------KHVANAEARVVKHNLLHPNDLRKMPHDFVPSA--VFTHPQIATVGLTEQEAREAGHDITVKIQ 371 (452)
T ss_pred cCcccC-----------hhHHHHHHHHHHHHhcCCCCcccCCCCCCCeE--EECCCCeeeeeCCHHHHHhcCCCeEEEEe
Confidence 876533 36899999999999997532 23456633 245667788887652 1100000
Q ss_pred ---------cccccceEEEEEe--cCCeEEEEEeecCch
Q psy2951 941 ---------GDLEALKFTAYYS--NADKVLAILTVGMDP 968 (1466)
Q Consensus 941 ---------~~~~~~~~~~~~~--~~~~i~g~~~~g~~~ 968 (1466)
...+...|+|+++ ++++++|++++|.+.
T Consensus 372 ~~~~~~~~~~~~~~~g~~Klv~d~~t~~ilG~~~vg~~a 410 (452)
T TIGR03452 372 NYGDVAYGWAMEDTTGFCKLIADRDTGKLLGAHIIGPQA 410 (452)
T ss_pred cCCchhhHhhcCCCCeEEEEEEECCCCEEEEEEEECCCH
Confidence 0123467899988 579999999999863
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. |
| >TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-31 Score=324.42 Aligned_cols=348 Identities=26% Similarity=0.378 Sum_probs=251.9
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCcc----ch----------------hcccC-------c
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKL----SK----------------QLDIK-------A 647 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~----~~----------------~~~~~-------~ 647 (1466)
++||+||||||||++||..|+++|.+ |+++|+ +.+++..... ++ .++.. .
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~--v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 77 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLK--VALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDW 77 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCe--EEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCH
Confidence 37999999999999999999999987 778887 3333211000 00 00000 0
Q ss_pred ccccc-----------cCHhHhhhCCcEEEEceEEEEeccccccEEEccCC-CEEecCEEEEcCCCCCCcCCCCCCCCcE
Q psy2951 648 DSILL-----------RTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDG-TSIDFTKIYLATGSSPRTISQADGVNKV 715 (1466)
Q Consensus 648 ~~~~~-----------~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~-~~~~~d~lviAtG~~~~~~~~~~g~~~~ 715 (1466)
..+.. .....+++.+++++.++ +..+ +.....+...++ .+++||+||||||++|+.|+++-+.+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~-~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~~~~~~~~~ 155 (461)
T TIGR01350 78 EKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGE-AKFL-DPGTVLVTGENGEETLTAKNIIIATGSRPRSLPGPFDFDGE 155 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEc-cCCEEEEecCCCcEEEEeCEEEEcCCCCCCCCCCCCCCCCc
Confidence 01111 11224456789999988 5555 655555555444 4799999999999999887763022322
Q ss_pred EEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEc
Q psy2951 716 FYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVM 795 (1466)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~ 795 (1466)
...+..+...+. ..+++++|||+|++|+|+|..|++.|.+|+++++.+.++ +.+++++.+.+.+.++++||++++
T Consensus 156 -~~~~~~~~~~~~---~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-~~~~~~~~~~~~~~l~~~gi~i~~ 230 (461)
T TIGR01350 156 -VVITSTGALNLK---EVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL-PGEDAEVSKVVAKALKKKGVKILT 230 (461)
T ss_pred -eEEcchHHhccc---cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC-CCCCHHHHHHHHHHHHHcCCEEEe
Confidence 223445544332 247899999999999999999999999999999998776 468889999999999999999999
Q ss_pred cceEEEEEecCCCceEEEECCCC--cEEecCEEEEccccccCcc--ccccCCceeeCCCcEEeCCCCCCCCCCeEEeccc
Q psy2951 796 KANVSSFEKNEKNDVTAANLDNG--TTIPADLVIVGIGTVLNTN--YLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 871 (1466)
Q Consensus 796 ~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~~--~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~ 871 (1466)
++++.+++.. ++.+ .+.+.+| +++++|.||+|+|.+|++. +++..++.++++|++.+|+++||+.|+|||+|||
T Consensus 231 ~~~v~~i~~~-~~~v-~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~IyaiGD~ 308 (461)
T TIGR01350 231 NTKVTAVEKN-DDQV-VYENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYMRTNVPGIYAIGDV 308 (461)
T ss_pred CCEEEEEEEe-CCEE-EEEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCCcccCCCCEEEeeec
Confidence 9999999743 3333 3555566 5799999999999999988 5788899999999999999999999999999999
Q ss_pred cccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCC-cC--cccCeeeeeecCceeEEeeccCC------CC--ceeEe
Q psy2951 872 AYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT-SL--STIPFFWTMLFGVGFRFAGYAAG------HT--QVDIV 940 (1466)
Q Consensus 872 ~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~-~~--~~~~~~~~~~~~~~~~~~g~~~~------~~--~~~~~ 940 (1466)
+..+. .+..|..||+.+|.+|.+... .+ ..+|. ..+++..+..+|+++. .+ .....
T Consensus 309 ~~~~~-----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~--~~~~~~~~a~vG~~~~~a~~~g~~~~~~~~~ 375 (461)
T TIGR01350 309 IGGPM-----------LAHVASHEGIVAAENIAGKEPAPIDYDAVPS--CIYTDPEVASVGLTEEQAKEAGYDVKIGKFP 375 (461)
T ss_pred CCCcc-----------cHHHHHHHHHHHHHHHcCCCCCCCCCCCCCe--EEecCCceEEEeCCHHHHHhCCCCeEEEEEe
Confidence 87543 357899999999999997644 32 33443 2245666777776542 11 00000
Q ss_pred --c------ccccceEEEEEe--cCCeEEEEEeecCc
Q psy2951 941 --G------DLEALKFTAYYS--NADKVLAILTVGMD 967 (1466)
Q Consensus 941 --~------~~~~~~~~~~~~--~~~~i~g~~~~g~~ 967 (1466)
. ..++..|.|+++ ++++++|+++++.+
T Consensus 376 ~~~~~~~~~~~~~~g~~kl~~~~~~~~ilG~~~~g~~ 412 (461)
T TIGR01350 376 FAANGKALALGETDGFVKIIADKKTGEILGAHIIGPH 412 (461)
T ss_pred CccchHHHhcCCCceEEEEEEECCCCEEEEEEEECCC
Confidence 0 112466889888 46899999999976
|
The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. |
| >TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-32 Score=322.25 Aligned_cols=292 Identities=18% Similarity=0.270 Sum_probs=236.0
Q ss_pred eEEEEcCchHHHHHHHHHHHc-CCCccEEEEcCCCCCCCCCCccchhc-c-cCcccccccCHhHhhhCCcEEEEceEEEE
Q psy2951 597 TFIVVGGGPSGATCVETLRQN-GFTGKLYFITDENFLPYDRVKLSKQL-D-IKADSILLRTEEFYKDNDIHVIKGKKIIS 673 (1466)
Q Consensus 597 ~vvVIGgG~AGl~aA~~l~~~-g~~~~v~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~gv~~~~~~~v~~ 673 (1466)
+|||||||+||+.+|..|+++ ..+.+|+++++++++.|... +.... + ...+++.....+++++.+++++.++ |..
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~-v~~ 78 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGM-LPGMIAGHYSLDEIRIDLRRLARQAGARFVIAE-ATG 78 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccch-hhHHHheeCCHHHhcccHHHHHHhcCCEEEEEE-EEE
Confidence 589999999999999999765 45677999999988877654 22222 1 3455666677778888899999886 999
Q ss_pred eccccccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCC-cEEEecCHHHHHh----hcccC---CCCCcEEEECCChH
Q psy2951 674 DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-KVFYLRTVEDANN----IAPHI---TPESNVVVIGSSFI 745 (1466)
Q Consensus 674 i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~-~~~~~~~~~~~~~----~~~~~---~~~~~vvVvG~G~~ 745 (1466)
+ |.+++.|.++++++++||+||||||+++..|++| |.. +++.+++.+++.. +.+.. ..+++++|||+|++
T Consensus 79 i-d~~~~~V~~~~g~~~~yD~LviAtG~~~~~~~i~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~ 156 (364)
T TIGR03169 79 I-DPDRRKVLLANRPPLSYDVLSLDVGSTTPLSGVE-GAADLAVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAA 156 (364)
T ss_pred E-ecccCEEEECCCCcccccEEEEccCCCCCCCCCC-cccccccccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHH
Confidence 9 9888999999998999999999999999999999 744 6677777766554 22222 23679999999999
Q ss_pred HHHHHHHHhc----cC--CeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCc
Q psy2951 746 GMEAAAFCAS----KV--KSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGT 819 (1466)
Q Consensus 746 g~e~A~~l~~----~g--~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~ 819 (1466)
|+|+|..|++ .| .+|+++ +.+.++ +.+++++...+.+.|+++||++++++++++++.+ .+.+++|+
T Consensus 157 g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l-~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~------~v~~~~g~ 228 (364)
T TIGR03169 157 GVEIALALRRRLPKRGLRGQVTLI-AGASLL-PGFPAKVRRLVLRLLARRGIEVHEGAPVTRGPDG------ALILADGR 228 (364)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEE-eCCccc-ccCCHHHHHHHHHHHHHCCCEEEeCCeeEEEcCC------eEEeCCCC
Confidence 9999998875 34 589999 555544 4578888999999999999999999999998722 46677889
Q ss_pred EEecCEEEEccccccCccccccCCceeeCCCcEEeCCCCCC-CCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHH
Q psy2951 820 TIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLET-NVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRI 898 (1466)
Q Consensus 820 ~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t-~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~ 898 (1466)
++++|.+|+|+|.+|++ ++...++.++++|++.+|+++|| ++|+|||+|||+..+... .++.+..|+.||+.
T Consensus 229 ~i~~D~vi~a~G~~p~~-~l~~~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~------~~~~~~~A~~~g~~ 301 (364)
T TIGR03169 229 TLPADAILWATGARAPP-WLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITDAP------RPKAGVYAVRQAPI 301 (364)
T ss_pred EEecCEEEEccCCChhh-HHHHcCCCcCCCCeEEECCccccCCCCCEEEeeeeeecCCCC------CCCchHHHHHhHHH
Confidence 99999999999999984 55667888888899999999998 999999999999765321 12356789999999
Q ss_pred HHHHhccCC
Q psy2951 899 AALNMVEKK 907 (1466)
Q Consensus 899 aA~~i~~~~ 907 (1466)
+|+||....
T Consensus 302 ~a~ni~~~l 310 (364)
T TIGR03169 302 LAANLRASL 310 (364)
T ss_pred HHHHHHHHh
Confidence 999997543
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. |
| >PRK12831 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=331.06 Aligned_cols=337 Identities=19% Similarity=0.245 Sum_probs=239.5
Q ss_pred ceEECCCCeeecC--CCCCCCCeEEEEEEcCeEEEEEcccchhcccccccc--ccccCCCCCCeEEEEcCchHHHHHHHH
Q psy2951 538 ACFNIATGDIEDF--PGMDSLPCYKVTIQNDDSVVVQARKDELKNKKRKLP--MAKLSSGNKDTFIVVGGGPSGATCVET 613 (1466)
Q Consensus 538 ~~f~~~~G~~~~~--p~~~~l~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~vvVIGgG~AGl~aA~~ 613 (1466)
.-|..-.|++|.. ||...+..-. .+..+.+...++.+.++..... +..+.+.+.++|+|||||||||+||+.
T Consensus 83 np~p~~~grvC~~~~~Ce~~C~r~~----~~~~v~I~~l~r~~~~~~~~~~~~~~~~~~~~~~~V~IIG~GpAGl~aA~~ 158 (464)
T PRK12831 83 NALPAVCGRVCPQESQCEGKCVLGI----KGEPVAIGKLERFVADWARENGIDLSETEEKKGKKVAVIGSGPAGLTCAGD 158 (464)
T ss_pred CCchhhhhccCCCCCChHHHhcCCC----CCCCeehhHHHHHHHHHHHHcCCCCCCCcCCCCCEEEEECcCHHHHHHHHH
Confidence 3455566888876 8876422221 2556777777777766542221 223345678999999999999999999
Q ss_pred HHHcCCCccEEEEcCCCCCCCCCC-ccchhcccCcccccccCHhHhhhCCcEEEEceEEEEeccccccEEEccCC-CEEe
Q psy2951 614 LRQNGFTGKLYFITDENFLPYDRV-KLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDG-TSID 691 (1466)
Q Consensus 614 l~~~g~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~-~~~~ 691 (1466)
|+++|++ |+++|+.+.+++... .+. .+....+++..+..+++++.|+++++++.+.. .+.+++. ..+.
T Consensus 159 l~~~G~~--V~v~e~~~~~GG~l~~gip-~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~~-------~v~~~~~~~~~~ 228 (464)
T PRK12831 159 LAKMGYD--VTIFEALHEPGGVLVYGIP-EFRLPKETVVKKEIENIKKLGVKIETNVVVGK-------TVTIDELLEEEG 228 (464)
T ss_pred HHhCCCe--EEEEecCCCCCCeeeecCC-CccCCccHHHHHHHHHHHHcCCEEEcCCEECC-------cCCHHHHHhccC
Confidence 9999998 777777654332111 111 11122233556666778889999999995521 2223222 3457
Q ss_pred cCEEEEcCCC-CCCcCCCCCCCC--cEEEecCHHHHHhhc--------ccCCCCCcEEEECCChHHHHHHHHHhccCCeE
Q psy2951 692 FTKIYLATGS-SPRTISQADGVN--KVFYLRTVEDANNIA--------PHITPESNVVVIGSSFIGMEAAAFCASKVKSV 760 (1466)
Q Consensus 692 ~d~lviAtG~-~~~~~~~~~g~~--~~~~~~~~~~~~~~~--------~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V 760 (1466)
||+||||||+ .|+.+++| |.+ +++...++.....+. .....+++|+|||+|++|+|+|..+.++|.+|
T Consensus 229 ~d~viiAtGa~~~~~l~ip-G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~V 307 (464)
T PRK12831 229 FDAVFIGSGAGLPKFMGIP-GENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEV 307 (464)
T ss_pred CCEEEEeCCCCCCCCCCCC-CcCCcCcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEE
Confidence 9999999998 69999999 876 666555544432221 12346899999999999999999999999999
Q ss_pred EEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECC------------------CCc--E
Q psy2951 761 TVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLD------------------NGT--T 820 (1466)
Q Consensus 761 ~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~------------------~g~--~ 820 (1466)
++++|.+...++....+ + +.+.+.||+++++..+.++..++++++..+.+. +|+ +
T Consensus 308 tlv~r~~~~~m~a~~~e----~-~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~ 382 (464)
T PRK12831 308 HIVYRRSEEELPARVEE----V-HHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFV 382 (464)
T ss_pred EEEeecCcccCCCCHHH----H-HHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEE
Confidence 99998764222221111 1 345678999999999999975455555444331 222 6
Q ss_pred EecCEEEEccccccCcccccc-CCceeeCCCcEEeCCC-CCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHH
Q psy2951 821 IPADLVIVGIGTVLNTNYLDG-KGVELNGQKAVVVNEY-LETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRI 898 (1466)
Q Consensus 821 i~~D~vi~a~G~~p~~~~~~~-~gl~~~~~G~i~vd~~-~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~ 898 (1466)
+++|+||+|+|+.|++.++.. .|++++++|+|.+|++ ++|+.|+|||+|||+..+. .+..|+.+|+.
T Consensus 383 i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~g~~-----------~v~~Ai~~G~~ 451 (464)
T PRK12831 383 LEVDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEETGLTSKEGVFAGGDAVTGAA-----------TVILAMGAGKK 451 (464)
T ss_pred EECCEEEECCCCCCChhhhcccCCceECCCCcEEECCCCCccCCCCEEEeCCCCCCch-----------HHHHHHHHHHH
Confidence 999999999999999988876 7899998999999987 9999999999999987543 34789999999
Q ss_pred HHHHhcc
Q psy2951 899 AALNMVE 905 (1466)
Q Consensus 899 aA~~i~~ 905 (1466)
||.+|..
T Consensus 452 AA~~I~~ 458 (464)
T PRK12831 452 AAKAIDE 458 (464)
T ss_pred HHHHHHH
Confidence 9999853
|
|
| >PTZ00153 lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-31 Score=324.56 Aligned_cols=281 Identities=19% Similarity=0.231 Sum_probs=207.6
Q ss_pred CcEEEEceEEEEeccccccEEEc-cCCCEEecCEEEEcCCCCCCcCCCCCCCC--cEEEecCHHHHHhhcccCCCCCcEE
Q psy2951 662 DIHVIKGKKIISDSELNEKKIKL-QDGTSIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHITPESNVV 738 (1466)
Q Consensus 662 gv~~~~~~~v~~i~~~~~~~v~~-~~~~~~~~d~lviAtG~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~vv 738 (1466)
+++++.+. ...+ +.. ++.+ .+++++.||+||||||++|..|+++ +.+ .++ +.+++..+.. .+++|+
T Consensus 248 ~v~vi~G~-a~f~-~~~--~v~v~~~g~~i~ad~lIIATGS~P~~P~~~-~~~~~~V~---ts~d~~~l~~---lpk~Vv 316 (659)
T PTZ00153 248 HVQVIYER-GHIV-DKN--TIKSEKSGKEFKVKNIIIATGSTPNIPDNI-EVDQKSVF---TSDTAVKLEG---LQNYMG 316 (659)
T ss_pred ceEEEEeE-EEEe-cCC--eEEEccCCEEEECCEEEEcCCCCCCCCCCC-CCCCCcEE---ehHHhhhhhh---cCCceE
Confidence 37888877 4343 433 3333 3567899999999999999988866 554 344 4455544432 378999
Q ss_pred EECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHH-HhcCcEEEccceEEEEEecCCCceEEEECC-
Q psy2951 739 VIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLF-ESKGVKFVMKANVSSFEKNEKNDVTAANLD- 816 (1466)
Q Consensus 739 VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l-~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~- 816 (1466)
|||+|++|+|+|..|+++|.+||++++.++++ +.+++++.+.+.+.+ +++||++++++.+++++..+++....+.+.
T Consensus 317 IVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll-~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~ 395 (659)
T PTZ00153 317 IVGMGIIGLEFMDIYTALGSEVVSFEYSPQLL-PLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSE 395 (659)
T ss_pred EECCCHHHHHHHHHHHhCCCeEEEEeccCccc-ccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEec
Confidence 99999999999999999999999999999877 468999999888875 679999999999999985433222233322
Q ss_pred ------CC--------cEEecCEEEEccccccCcccc--ccCCceeeCCCcEEeCCCCCCC------CCCeEEecccccc
Q psy2951 817 ------NG--------TTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETN------VPGVYAGGDIAYA 874 (1466)
Q Consensus 817 ------~g--------~~i~~D~vi~a~G~~p~~~~~--~~~gl~~~~~G~i~vd~~~~t~------~~~iya~GD~~~~ 874 (1466)
++ +++++|.|++|+|++||++++ +..++++++ |+|.||++|||+ +|+|||+|||+..
T Consensus 396 ~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~~gi~~~~-G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~ 474 (659)
T PTZ00153 396 RQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLDKLKIQMKR-GFVSVDEHLRVLREDQEVYDNIFCIGDANGK 474 (659)
T ss_pred cccccccccccccccceEEEcCEEEEEECcccCCccCCchhcCCcccC-CEEeECCCCCcCCCCCCCCCCEEEEEecCCC
Confidence 11 379999999999999999864 677888764 899999999997 6999999999865
Q ss_pred CCcccCCceeeeccHHHHHHHHHHHHHHhccCC-------------C--cCcccCeeeeeecCceeEEeeccCCCC----
Q psy2951 875 PLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK-------------T--SLSTIPFFWTMLFGVGFRFAGYAAGHT---- 935 (1466)
Q Consensus 875 ~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~-------------~--~~~~~~~~~~~~~~~~~~~~g~~~~~~---- 935 (1466)
+. .++.|.+||+.+|++|++.. . .+..+|. ..++.+.+.++|+++...
T Consensus 475 ~~-----------La~~A~~qg~~aa~ni~g~~~~~~~~~~~~~~~~~~~~~~iP~--~ift~PeiA~VGlTE~eA~~~g 541 (659)
T PTZ00153 475 QM-----------LAHTASHQALKVVDWIEGKGKENVNINVENWASKPIIYKNIPS--VCYTTPELAFIGLTEKEAKELY 541 (659)
T ss_pred cc-----------CHHHHHHHHHHHHHHHcCCCccccccccccccccccccCcCCE--EEECcCceEEeeCCHHHHHhcC
Confidence 43 45799999999999999862 1 1334442 235566678888765210
Q ss_pred ---ce-----eEec--------c--------------------cccceEEEEEe--cCCeEEEEEeecCch
Q psy2951 936 ---QV-----DIVG--------D--------------------LEALKFTAYYS--NADKVLAILTVGMDP 968 (1466)
Q Consensus 936 ---~~-----~~~~--------~--------------------~~~~~~~~~~~--~~~~i~g~~~~g~~~ 968 (1466)
+. .... + .++..|+|+++ ++++++|++++|...
T Consensus 542 ~~~~v~v~~~~~~~~~ra~~~~~~~~p~~~~~~~y~~g~~~~~~~~~G~vKli~d~~t~rILGa~ivG~~A 612 (659)
T PTZ00153 542 PPDNVGVEISFYKANSKVLCENNISFPNNSKNNSYNKGKYNTVDNTEGMVKIVYLKDTKEILGMFIVGSYA 612 (659)
T ss_pred CCcceEEEEEEecccchhhhccccccccccccccccccccccccCCceEEEEEEECCCCeEEEEEEECCCH
Confidence 00 0000 0 01467899988 578999999999984
|
|
| >PRK06327 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-30 Score=319.18 Aligned_cols=348 Identities=24% Similarity=0.342 Sum_probs=247.6
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcC------CCCCCCCC----Cccch-----------------hcccC-
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITD------ENFLPYDR----VKLSK-----------------QLDIK- 646 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~------~~~~~~~~----~~~~~-----------------~~~~~- 646 (1466)
.+|++||||||||++||.++++.|.+ |+++|+ ...+++.. +..++ .++..
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~--v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~ 81 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLK--VACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHV 81 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCe--EEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccC
Confidence 58999999999999999999999988 777776 11111100 00000 00000
Q ss_pred ------cccccc-----------cCHhHhhhCCcEEEEceEEEEecc--ccccEEEcc--CCCEEecCEEEEcCCCCCCc
Q psy2951 647 ------ADSILL-----------RTEEFYKDNDIHVIKGKKIISDSE--LNEKKIKLQ--DGTSIDFTKIYLATGSSPRT 705 (1466)
Q Consensus 647 ------~~~~~~-----------~~~~~~~~~gv~~~~~~~v~~i~~--~~~~~v~~~--~~~~~~~d~lviAtG~~~~~ 705 (1466)
...+.. .....++..+|+++.++ +..+ + ...++|.+. ++.+++||+||||||++|+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~-~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p~~ 159 (475)
T PRK06327 82 DGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGR-GSFV-GKTDAGYEIKVTGEDETVITAKHVIIATGSEPRH 159 (475)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEe-cCCCCCCEEEEecCCCeEEEeCEEEEeCCCCCCC
Confidence 001111 11233455699999988 6555 3 235566654 34589999999999999976
Q ss_pred CCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHH
Q psy2951 706 ISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKL 785 (1466)
Q Consensus 706 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~ 785 (1466)
++.. +.+....+ +.++...+ ...+++|+|||+|++|+|+|..|++.|.+||++++.+.++ +.+++++...+.+.
T Consensus 160 ~p~~-~~~~~~~~-~~~~~~~~---~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-~~~d~~~~~~~~~~ 233 (475)
T PRK06327 160 LPGV-PFDNKIIL-DNTGALNF---TEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFL-AAADEQVAKEAAKA 233 (475)
T ss_pred CCCC-CCCCceEE-CcHHHhcc---cccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccC-CcCCHHHHHHHHHH
Confidence 5543 22222112 33333322 2347999999999999999999999999999999998776 45788999999999
Q ss_pred HHhcCcEEEccceEEEEEecCCCceEEEECCC--C--cEEecCEEEEccccccCccc--cccCCceeeCCCcEEeCCCCC
Q psy2951 786 FESKGVKFVMKANVSSFEKNEKNDVTAANLDN--G--TTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLE 859 (1466)
Q Consensus 786 l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~--g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~ 859 (1466)
|+++||++++++++++++..+ +.+ .+.+.+ | +++++|.|++++|++|++++ ++..+++++++|+|.+|++++
T Consensus 234 l~~~gi~i~~~~~v~~i~~~~-~~v-~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~ 311 (475)
T PRK06327 234 FTKQGLDIHLGVKIGEIKTGG-KGV-SVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCR 311 (475)
T ss_pred HHHcCcEEEeCcEEEEEEEcC-CEE-EEEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCCCc
Confidence 999999999999999998433 223 344433 3 47999999999999999884 567889999999999999999
Q ss_pred CCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCC--cCcccCeeeeeecCceeEEeeccCCC---
Q psy2951 860 TNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT--SLSTIPFFWTMLFGVGFRFAGYAAGH--- 934 (1466)
Q Consensus 860 t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~--- 934 (1466)
|+.|+|||+|||+..+. .++.|..||+.||.+|++... .++.+|... ++++.+..+|+++..
T Consensus 312 Ts~~~VyA~GD~~~~~~-----------~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~~~--~~~pe~a~vGlte~~a~~ 378 (475)
T PRK06327 312 TNVPNVYAIGDVVRGPM-----------LAHKAEEEGVAVAERIAGQKGHIDYNTIPWVI--YTSPEIAWVGKTEQQLKA 378 (475)
T ss_pred cCCCCEEEEEeccCCcc-----------hHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEE--eCCcceEEEeCCHHHHHH
Confidence 99999999999987543 347899999999999998653 244555432 456677788876521
Q ss_pred ---Ccee--E--ec------ccccceEEEEEe--cCCeEEEEEeecCc
Q psy2951 935 ---TQVD--I--VG------DLEALKFTAYYS--NADKVLAILTVGMD 967 (1466)
Q Consensus 935 ---~~~~--~--~~------~~~~~~~~~~~~--~~~~i~g~~~~g~~ 967 (1466)
+-.. . .. ..+...|+|+++ ++++++|++++|.+
T Consensus 379 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilG~~~~g~~ 426 (475)
T PRK06327 379 EGVEYKAGKFPFMANGRALAMGEPDGFVKIIADAKTDEILGVHVIGPN 426 (475)
T ss_pred cCCCEEEEEEcccccchhhhcCCCCeEEEEEEECCCCEEEEEEEECCC
Confidence 1000 0 00 113467899988 47999999999976
|
|
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=330.13 Aligned_cols=339 Identities=19% Similarity=0.217 Sum_probs=236.2
Q ss_pred eEECCCCeeecC--CCCCCCCeEEEEEEcCeEEEEEcccchhccccc---cccccccCCCCCCeEEEEcCchHHHHHHHH
Q psy2951 539 CFNIATGDIEDF--PGMDSLPCYKVTIQNDDSVVVQARKDELKNKKR---KLPMAKLSSGNKDTFIVVGGGPSGATCVET 613 (1466)
Q Consensus 539 ~f~~~~G~~~~~--p~~~~l~~~~v~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~vvVIGgG~AGl~aA~~ 613 (1466)
-|..-.|++|.. ||...+..-..+...++.+-+...++.+.+... +...+.+.+.+.++|+|||||||||+||..
T Consensus 72 p~p~~~grvC~~~~~Ce~~C~~~~~~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~IIG~G~aGl~aA~~ 151 (449)
T TIGR01316 72 LLPAICGRVCPQERQCEGQCTVGKMFKDVGKPVSIGALERFVADWERQHGIETEPEKAPSTHKKVAVIGAGPAGLACASE 151 (449)
T ss_pred ChhHHhccCCCCccchHhhCcCCCcCCCCCCCccHHHHHHHHHhHHHhcCCCcCCCCCCCCCCEEEEECcCHHHHHHHHH
Confidence 344456777776 777532221111113455555666665554332 111122334567899999999999999999
Q ss_pred HHHcCCCccEEEEcCCCCCCCCCCccchhcccCcccccccCHhHhhhCCcEEEEceEEEEeccccccEEEccCCCEEecC
Q psy2951 614 LRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFT 693 (1466)
Q Consensus 614 l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~d 693 (1466)
|++.|++ |+++++.+.+++.. .+.........++.....+.+++.|++++.++.+. +.+++.+. ...||
T Consensus 152 l~~~G~~--V~vie~~~~~GG~l-~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~-------~~v~~~~~-~~~yd 220 (449)
T TIGR01316 152 LAKAGHS--VTVFEALHKPGGVV-TYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVG-------KTATLEEL-FSQYD 220 (449)
T ss_pred HHHCCCc--EEEEecCCCCCcEe-eecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccC-------CcCCHHHH-HhhCC
Confidence 9999988 77787765433211 11100001223445555667788899999998431 22333322 34799
Q ss_pred EEEEcCCC-CCCcCCCCCCCC--cEEEecCHHHHHhhcc---------cCCCCCcEEEECCChHHHHHHHHHhccCCeEE
Q psy2951 694 KIYLATGS-SPRTISQADGVN--KVFYLRTVEDANNIAP---------HITPESNVVVIGSSFIGMEAAAFCASKVKSVT 761 (1466)
Q Consensus 694 ~lviAtG~-~~~~~~~~~g~~--~~~~~~~~~~~~~~~~---------~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~ 761 (1466)
+||||||+ .|+.|++| |.+ +++...++.....+.. ....+++|+|||+|++|+|+|..+.++|.+||
T Consensus 221 ~viiAtGa~~p~~~~ip-G~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vt 299 (449)
T TIGR01316 221 AVFIGTGAGLPKLMNIP-GEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVH 299 (449)
T ss_pred EEEEeCCCCCCCcCCCC-CCCCCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEE
Confidence 99999998 79999998 866 5665544433322211 12357999999999999999999999999999
Q ss_pred EEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECC---------CC-----------cEE
Q psy2951 762 VVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLD---------NG-----------TTI 821 (1466)
Q Consensus 762 lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~---------~g-----------~~i 821 (1466)
++++.++..++.. ....+.++++||+++++..++++..++++++..+.+. +| .++
T Consensus 300 lv~~~~~~~~~~~-----~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i 374 (449)
T TIGR01316 300 CLYRRTREDMTAR-----VEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKL 374 (449)
T ss_pred EEeecCcccCCCC-----HHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEE
Confidence 9999864322211 2223567889999999999999975445555555432 22 369
Q ss_pred ecCEEEEccccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHH
Q psy2951 822 PADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAAL 901 (1466)
Q Consensus 822 ~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~ 901 (1466)
++|.||+|+|+.|++.+++..+++++++|+|.+|++++|+.|+|||+|||+..+. ++..|+.||+.||.
T Consensus 375 ~~D~Vi~AiG~~p~~~~l~~~gl~~~~~G~i~vd~~~~Ts~~~VfA~GD~~~g~~-----------~v~~Ai~~G~~AA~ 443 (449)
T TIGR01316 375 EADAVIVAIGNGSNPIMAETTRLKTSERGTIVVDEDQRTSIPGVFAGGDIILGAA-----------TVIRAMGQGKRAAK 443 (449)
T ss_pred ECCEEEECCCCCCCchhhhccCcccCCCCeEEeCCCCccCCCCEEEecCCCCCcH-----------HHHHHHHHHHHHHH
Confidence 9999999999999998888889999989999999999999999999999986543 34789999999999
Q ss_pred Hhcc
Q psy2951 902 NMVE 905 (1466)
Q Consensus 902 ~i~~ 905 (1466)
+|..
T Consensus 444 ~I~~ 447 (449)
T TIGR01316 444 SINE 447 (449)
T ss_pred HHHh
Confidence 9853
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
| >PTZ00052 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-31 Score=320.32 Aligned_cols=344 Identities=19% Similarity=0.293 Sum_probs=244.4
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC--------CCCCCC----Cccch-----------------hcc-
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN--------FLPYDR----VKLSK-----------------QLD- 644 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~--------~~~~~~----~~~~~-----------------~~~- 644 (1466)
.+||+||||||||++||..|+++|.+ |+++|+.. .+++.- +..++ .++
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~--V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~ 82 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKK--VALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGW 82 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCe--EEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCC
Confidence 58999999999999999999999998 77777421 112110 00000 000
Q ss_pred -----cCcccccccCHh-----------HhhhCCcEEEEceEEEEeccccccEEEccC---CCEEecCEEEEcCCCCCCc
Q psy2951 645 -----IKADSILLRTEE-----------FYKDNDIHVIKGKKIISDSELNEKKIKLQD---GTSIDFTKIYLATGSSPRT 705 (1466)
Q Consensus 645 -----~~~~~~~~~~~~-----------~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~---~~~~~~d~lviAtG~~~~~ 705 (1466)
.+..++..+... .++..+|+++.++ +... +. ++|.+.+ +..++||+||||||++|+.
T Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~-a~~~-~~--~~v~v~~~~~~~~i~~d~lIIATGs~p~~ 158 (499)
T PTZ00052 83 KTSSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGL-AKLK-DE--HTVSYGDNSQEETITAKYILIATGGRPSI 158 (499)
T ss_pred CCCCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEE-EEEc-cC--CEEEEeeCCCceEEECCEEEEecCCCCCC
Confidence 111222222222 2233588888877 4444 33 4444432 3579999999999999998
Q ss_pred CC-CCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHH
Q psy2951 706 IS-QADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITK 784 (1466)
Q Consensus 706 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~ 784 (1466)
|+ +| |.+.. ..+.++...+. ..+++++|||+|++|+|+|..|+++|.+||++.+. .++ +.+++++.+.+.+
T Consensus 159 p~~i~-G~~~~--~~~~~~~~~~~---~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l-~~~d~~~~~~l~~ 230 (499)
T PTZ00052 159 PEDVP-GAKEY--SITSDDIFSLS---KDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS-IPL-RGFDRQCSEKVVE 230 (499)
T ss_pred CCCCC-Cccce--eecHHHHhhhh---cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-ccc-ccCCHHHHHHHHH
Confidence 85 78 76522 12444443332 24789999999999999999999999999999874 444 6789999999999
Q ss_pred HHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCcccc--ccCCceeeCCCcEEeCCCCCCCC
Q psy2951 785 LFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNV 862 (1466)
Q Consensus 785 ~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~--~~~gl~~~~~G~i~vd~~~~t~~ 862 (1466)
.|+++||+++++..+.+++..+ +. ..+.+.+|+++++|.|++++|++||++++ +..+++++++|++.+++. +|+.
T Consensus 231 ~l~~~GV~i~~~~~v~~v~~~~-~~-~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~-~Ts~ 307 (499)
T PTZ00052 231 YMKEQGTLFLEGVVPINIEKMD-DK-IKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND-CTNI 307 (499)
T ss_pred HHHHcCCEEEcCCeEEEEEEcC-Ce-EEEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC-cCCC
Confidence 9999999999999999997432 22 35667788899999999999999999875 678899999998777776 9999
Q ss_pred CCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCCc---CcccCeeeeeecCceeEEeeccCCC-----
Q psy2951 863 PGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS---LSTIPFFWTMLFGVGFRFAGYAAGH----- 934 (1466)
Q Consensus 863 ~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~~----- 934 (1466)
|+|||+|||+.... ..++.|.+||+.+|+||++.... +..+|+.. +..+.+..+|+++..
T Consensus 308 p~IyAiGDv~~~~~----------~l~~~A~~~g~~aa~ni~g~~~~~~~~~~~p~~i--ft~p~ia~vGlte~~A~~~~ 375 (499)
T PTZ00052 308 PNIFAVGDVVEGRP----------ELTPVAIKAGILLARRLFKQSNEFIDYTFIPTTI--FTPIEYGACGYSSEAAIAKY 375 (499)
T ss_pred CCEEEEEEecCCCc----------ccHHHHHHHHHHHHHHHhCCCCCcCccccCCeEE--ecCCcceeecCCHHHHHHhc
Confidence 99999999985321 24579999999999999975432 34455322 335667788876421
Q ss_pred --CceeEe-------------cc-------------cccceEEEEEec---CCeEEEEEeecCc
Q psy2951 935 --TQVDIV-------------GD-------------LEALKFTAYYSN---ADKVLAILTVGMD 967 (1466)
Q Consensus 935 --~~~~~~-------------~~-------------~~~~~~~~~~~~---~~~i~g~~~~g~~ 967 (1466)
.+.... .. ....+|.|++++ +++++|++++|.+
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~~IlG~~ivg~~ 439 (499)
T PTZ00052 376 GEDDIEEYLQEFNTLEIAAVHREKHERARKDEYDFDVSSNCLAKLVCVKSEDNKVVGFHFVGPN 439 (499)
T ss_pred CCCCEEEEEeecccchhhccccccccccccccccccccCCceEEEEEecCCCCEEEEEEEECCC
Confidence 111000 00 014568999873 5999999999976
|
|
| >PRK06292 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-31 Score=320.87 Aligned_cols=343 Identities=27% Similarity=0.334 Sum_probs=243.0
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCc----cch----------------hc-------ccCc
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK----LSK----------------QL-------DIKA 647 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~----~~~----------------~~-------~~~~ 647 (1466)
.+||+||||||||++||..|++.|.+ |+++|++ .+++.... .++ .+ ..+.
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~~--v~lie~~-~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~~ 79 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGKK--VALIEKG-PLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKIDF 79 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCe--EEEEeCC-ccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccCH
Confidence 58999999999999999999999988 7788874 22221110 000 00 0111
Q ss_pred ccccccC------------HhHhhhCCcEEEEceEEEEeccccccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCCc-
Q psy2951 648 DSILLRT------------EEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNK- 714 (1466)
Q Consensus 648 ~~~~~~~------------~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~~- 714 (1466)
.++..+. ...++..+++++.++ +..+ +. +.+.+ ++.++.||+||||||++ .|++| |.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~-~~--~~v~v-~~~~~~~d~lIiATGs~--~p~ip-g~~~~ 151 (460)
T PRK06292 80 KKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGT-ARFV-DP--NTVEV-NGERIEAKNIVIATGSR--VPPIP-GVWLI 151 (460)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEE-EEEc-cC--CEEEE-CcEEEEeCEEEEeCCCC--CCCCC-CCccc
Confidence 1221111 122345588888776 5554 33 34444 56789999999999998 45555 5420
Q ss_pred -EEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEE
Q psy2951 715 -VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKF 793 (1466)
Q Consensus 715 -~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~ 793 (1466)
.....+..+...+. ..+++++|||+|++|+|+|..|+++|.+|+++++.+.++ +.+++++...+.+.|+++ |++
T Consensus 152 ~~~~~~~~~~~~~~~---~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-~~~d~~~~~~~~~~l~~~-I~i 226 (460)
T PRK06292 152 LGDRLLTSDDAFELD---KLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRIL-PLEDPEVSKQAQKILSKE-FKI 226 (460)
T ss_pred CCCcEECchHHhCcc---ccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC-cchhHHHHHHHHHHHhhc-cEE
Confidence 01112334433222 348999999999999999999999999999999998776 468899999999999999 999
Q ss_pred EccceEEEEEecCCCceEEEEC--CCCcEEecCEEEEccccccCccc--cccCCceeeCCCcEEeCCCCCCCCCCeEEec
Q psy2951 794 VMKANVSSFEKNEKNDVTAANL--DNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGG 869 (1466)
Q Consensus 794 ~~~~~v~~i~~~~~~~~~~v~~--~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t~~~~iya~G 869 (1466)
++++++++++..++..+ .+.+ .+++++++|.|++++|++|++++ ++..+++++++|+|.||+++||+.|+|||+|
T Consensus 227 ~~~~~v~~i~~~~~~~v-~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~ts~~~IyA~G 305 (460)
T PRK06292 227 KLGAKVTSVEKSGDEKV-EELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVPGIYAAG 305 (460)
T ss_pred EcCCEEEEEEEcCCceE-EEEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCcccCCCCEEEEE
Confidence 99999999984332122 2323 23357999999999999999984 5778999999999999999999999999999
Q ss_pred cccccCCcccCCceeeeccHHHHHHHHHHHHHHhccC-CCc--CcccCeeeeeecCceeEEeeccCC------CCc--ee
Q psy2951 870 DIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEK-KTS--LSTIPFFWTMLFGVGFRFAGYAAG------HTQ--VD 938 (1466)
Q Consensus 870 D~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~-~~~--~~~~~~~~~~~~~~~~~~~g~~~~------~~~--~~ 938 (1466)
||+..+. .+..|..||+.||.||++. ... +..+|+ ..+++.++..+|+++. .+- ..
T Consensus 306 D~~~~~~-----------~~~~A~~qg~~aa~~i~~~~~~~~~~~~~p~--~~~~~~~~a~vG~te~~a~~~g~~~~~~~ 372 (460)
T PRK06292 306 DVNGKPP-----------LLHEAADEGRIAAENAAGDVAGGVRYHPIPS--VVFTDPQIASVGLTEEELKAAGIDYVVGE 372 (460)
T ss_pred ecCCCcc-----------chhHHHHHHHHHHHHhcCCCCCCcCCCCCCe--EEECCCccEEeECCHHHHHhcCCCeEEEE
Confidence 9987543 3468999999999999974 222 344553 2244667778887652 110 00
Q ss_pred Eec--------ccccceEEEEEe--cCCeEEEEEeecCc
Q psy2951 939 IVG--------DLEALKFTAYYS--NADKVLAILTVGMD 967 (1466)
Q Consensus 939 ~~~--------~~~~~~~~~~~~--~~~~i~g~~~~g~~ 967 (1466)
... .-++..|.|+++ ++++++|++++|.+
T Consensus 373 ~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilG~~~vg~~ 411 (460)
T PRK06292 373 VPFEAQGRARVMGKNDGFVKVYADKKTGRLLGAHIIGPD 411 (460)
T ss_pred EecccchHHHhcCCCCeEEEEEEECCCCEEEEEEEECCC
Confidence 000 112567899988 46899999999986
|
|
| >KOG1346|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=276.45 Aligned_cols=332 Identities=25% Similarity=0.426 Sum_probs=272.8
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCccchhcccCcc-----------------cccccCh
Q psy2951 41 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKAD-----------------SILLRTE 103 (1466)
Q Consensus 41 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~ 103 (1466)
.++...+|||||.|..+++...+.+.....+..++.++.+||.++++++++....+ +++....
T Consensus 176 p~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd 255 (659)
T KOG1346|consen 176 PKHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPD 255 (659)
T ss_pred cccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecCC
Confidence 44667899999999999999888888888888999999999999999998743221 2222222
Q ss_pred hhh---------hcCCeEEEeCceEEEeccccccEEEecCCcEEecCEEEEccCCCCCCCCCCCC-----CCcEEEecCH
Q psy2951 104 EFY---------KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADG-----VNKVFYLRTV 169 (1466)
Q Consensus 104 ~~~---------~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~~-----~~~~~~~~~~ 169 (1466)
.++ .+-||.+..|..++. ++..++.|++.+|.+|.||+++||||.+|+.++.+.. .+.+.+++..
T Consensus 256 ~FfvspeDLp~~~nGGvAvl~G~kvvk-id~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A~~evk~kit~fr~p 334 (659)
T KOG1346|consen 256 GFFVSPEDLPKAVNGGVAVLRGRKVVK-IDEEDKKVILNDGTTIGYDKCLIATGVRPKKLQVFEEASEEVKQKITYFRYP 334 (659)
T ss_pred cceeChhHCcccccCceEEEeccceEE-eecccCeEEecCCcEeehhheeeecCcCcccchhhhhcCHHhhhheeEEecc
Confidence 221 134788999998875 5677899999999999999999999999998876543 3457788899
Q ss_pred HHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhC----CCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEEcCc
Q psy2951 170 EDANNIAPHITPESNVVVIGSSFIGMEAAAFCASK----VKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKA 245 (1466)
Q Consensus 170 ~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~----g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~ 245 (1466)
.+...+...+...++|.|||+|++|.|+|..|.+. |.+|+-+......+...++..++++-.+.+++.||.++.+.
T Consensus 335 ~DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna 414 (659)
T KOG1346|consen 335 ADFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNA 414 (659)
T ss_pred hHHHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccch
Confidence 99999888777778999999999999999998764 56787776655666666777788888899999999999999
Q ss_pred eEEEEEecCCCCeEEEEcCCCcEEeccEEEEeeccccCccccccCCceecCC-ccEEECCCCCcCCCCEEEecccccccC
Q psy2951 246 NVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQ-KAVVVNEYLETNVPGVYAGGDIAYAPL 324 (1466)
Q Consensus 246 ~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~l~~~gl~~~~~-g~i~vd~~~~t~~~~iya~GD~~~~~~ 324 (1466)
.|.++.... ....+++.||.++..|+|++|+|-.||+++++..|+++|.. |.+.||..++. ..|||++||++.+..
T Consensus 415 ~v~sv~~~~--~nl~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgLeiD~~lGGfrvnaeL~a-r~NvwvAGdaacF~D 491 (659)
T KOG1346|consen 415 KVESVRKCC--KNLVLKLSDGSELRTDLVVVAVGEEPNSELAEASGLEIDEKLGGFRVNAELKA-RENVWVAGDAACFED 491 (659)
T ss_pred hhhhhhhhc--cceEEEecCCCeeeeeeEEEEecCCCchhhcccccceeecccCcEEeeheeec-ccceeeecchhhhhc
Confidence 999887643 23457899999999999999999999999999999999987 78999998886 369999999998764
Q ss_pred ccCCCCcceeccHHHHHHHHHHHHHHhcCCCCCCCCCCccccccc-ceeeEEEEe
Q psy2951 325 HSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLF-GVGFRFAGY 378 (1466)
Q Consensus 325 ~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~p~~~s~~~-~~~~~~~G~ 378 (1466)
. ..| ..|.+|+.+|+-+|+.|++||.+...+|.....||++.. .+++..+|.
T Consensus 492 ~-~LG-rRRVehhdhavvSGRLAGENMtgAakpy~hqsmFWsdlgP~igyeaIGl 544 (659)
T KOG1346|consen 492 G-VLG-RRRVEHHDHAVVSGRLAGENMTGAAKPYKHQSMFWSDLGPEIGYEAIGL 544 (659)
T ss_pred c-ccc-ceeccccccceeeceecccccccccCCccccceeeeccCcccccceeee
Confidence 3 333 567999999999999999999999999999999999874 356655554
|
|
| >KOG1335|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-30 Score=274.90 Aligned_cols=347 Identities=22% Similarity=0.352 Sum_probs=251.4
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCC----------C----------CCcc--chhcc-------
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY----------D----------RVKL--SKQLD------- 644 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~----------~----------~~~~--~~~~~------- 644 (1466)
..+|++|||+||+|..||...+++|.+ -..+|++..+++ . ...- ....+
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlk--TacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~ 115 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLK--TACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVS 115 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcce--eEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCcccccee
Confidence 579999999999999999999999998 445566432221 0 0000 00000
Q ss_pred cC-----------cccccccCHhHhhhCCcEEEEceEEEEeccccccEEEccCC--CEEecCEEEEcCCCC-CCcCCCCC
Q psy2951 645 IK-----------ADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSS-PRTISQAD 710 (1466)
Q Consensus 645 ~~-----------~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~--~~~~~d~lviAtG~~-~~~~~~~~ 710 (1466)
.+ ..++..-+...+++.+|+++.+. -..+ ++..-.+...++ ..++++++||||||. +..|.+.
T Consensus 116 ~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~-gsf~-~p~~V~v~k~dg~~~ii~aKnIiiATGSeV~~~PGI~- 192 (506)
T KOG1335|consen 116 LDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGF-GSFL-DPNKVSVKKIDGEDQIIKAKNIIIATGSEVTPFPGIT- 192 (506)
T ss_pred cCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeee-Eeec-CCceEEEeccCCCceEEeeeeEEEEeCCccCCCCCeE-
Confidence 01 11111222345667789998888 4444 777777766666 478999999999984 4333322
Q ss_pred CCC--cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHh
Q psy2951 711 GVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFES 788 (1466)
Q Consensus 711 g~~--~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~ 788 (1466)
+| .+. +...+..+. +-+++++|||+|++|+|++..+.++|.+||+++-.+... +.+|.+++...++.|.+
T Consensus 193 -IDekkIV---SStgALsL~---~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~-~~mD~Eisk~~qr~L~k 264 (506)
T KOG1335|consen 193 -IDEKKIV---SSTGALSLK---EVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIG-GVMDGEISKAFQRVLQK 264 (506)
T ss_pred -ecCceEE---ecCCccchh---hCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhc-cccCHHHHHHHHHHHHh
Confidence 12 222 223333333 248999999999999999999999999999999998777 45999999999999999
Q ss_pred cCcEEEccceEEEEEecCCCceEEEECC---CC--cEEecCEEEEccccccCccc--cccCCceeeCCCcEEeCCCCCCC
Q psy2951 789 KGVKFVMKANVSSFEKNEKNDVTAANLD---NG--TTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETN 861 (1466)
Q Consensus 789 ~gv~~~~~~~v~~i~~~~~~~~~~v~~~---~g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t~ 861 (1466)
+|++|++++++...+.+.++.+ .+.+. ++ ++++||.+++++|++|-+.- ++..|++.|..|.+.+|..++|.
T Consensus 265 QgikF~l~tkv~~a~~~~dg~v-~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~t~ 343 (506)
T KOG1335|consen 265 QGIKFKLGTKVTSATRNGDGPV-EIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQTK 343 (506)
T ss_pred cCceeEeccEEEEeeccCCCce-EEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceecccccccc
Confidence 9999999999999997777644 34332 22 47999999999999999874 57789999999999999999999
Q ss_pred CCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCC--CcCcccCeeeeeecC-ceeEEeeccCCCC---
Q psy2951 862 VPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK--TSLSTIPFFWTMLFG-VGFRFAGYAAGHT--- 935 (1466)
Q Consensus 862 ~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~--~~~~~~~~~~~~~~~-~~~~~~g~~~~~~--- 935 (1466)
+|+||++||+...|+.. +.|..||-.+.+.|.+.. -.|..+| +.+|. ..+..+|.++...
T Consensus 344 vP~i~~IGDv~~gpMLA-----------hkAeeegI~~VE~i~g~~~hv~ynciP---~v~ythPEvawVG~TEeqlkee 409 (506)
T KOG1335|consen 344 VPHIYAIGDVTLGPMLA-----------HKAEEEGIAAVEGIAGGHGHVDYNCIP---SVVYTHPEVAWVGKTEEQLKEE 409 (506)
T ss_pred CCceEEecccCCcchhh-----------hhhhhhchhheeeecccCcccccCCCC---ceeecccceeeeccchhhHHhc
Confidence 99999999999888755 789999999999998764 3455555 22222 2244555543210
Q ss_pred -------------ceeEecccccceEEEEEe--cCCeEEEEEeecCch
Q psy2951 936 -------------QVDIVGDLEALKFTAYYS--NADKVLAILTVGMDP 968 (1466)
Q Consensus 936 -------------~~~~~~~~~~~~~~~~~~--~~~~i~g~~~~g~~~ 968 (1466)
......+.+..+|+|... ++++++|++++|++.
T Consensus 410 gi~y~vgkfpF~aNsRaktn~d~eg~vKvl~d~~tdkiLGvHiigp~A 457 (506)
T KOG1335|consen 410 GIKYKVGKFPFSANSRAKTNNDTEGFVKVLADKETDKILGVHIIGPNA 457 (506)
T ss_pred CcceEeeeccccccchhhccCCccceeEEEecCCCCcEEEEEEecCCH
Confidence 001111334567888887 789999999999984
|
|
| >COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-29 Score=306.56 Aligned_cols=363 Identities=28% Similarity=0.339 Sum_probs=297.5
Q ss_pred EEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhcc---CcccccccChhhhccCCcEEEcCCeEEEe
Q psy2951 1069 FIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDI---KADSILLRTEEFYKDNDIHVIKGKKIISD 1145 (1466)
Q Consensus 1069 vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~v~~i 1145 (1466)
++|||+|++|+++|..|++...+.+|+++.++++.+|.+++++..+.. ..+.+..... +....+++++.+++|+++
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~v~~i 79 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPR-FNRATGIDVRTGTEVTSI 79 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccch-hHHhhCCEEeeCCEEEEe
Confidence 589999999999999999999889999999999999999999988762 2333333333 334668999999999999
Q ss_pred ecCCCCeEEecCCcEEecCeEEEecCCCCCcCCCCCCCCcEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHHHh
Q psy2951 1146 SELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCA 1225 (1466)
Q Consensus 1146 ~d~~~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~ 1225 (1466)
|+.++.|.+.++ ++.||+|++|||++|+.++.. ...++++++..+++.+++......++++|+|+|++|+++|..++
T Consensus 80 -d~~~~~v~~~~g-~~~yd~LvlatGa~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~gle~A~~~~ 156 (415)
T COG0446 80 -DPENKVVLLDDG-EIEYDYLVLATGARPRPPPIS-DWEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAA 156 (415)
T ss_pred -cCCCCEEEECCC-cccccEEEEcCCCcccCCCcc-ccCceEEECCHHHHHHHHHHHhccCeEEEECCcHHHHHHHHHHH
Confidence 999999999999 899999999999999988722 34489999999999999877776799999999999999999999
Q ss_pred cCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEE--EEcCCCCeeecCEEEEeecc
Q psy2951 1226 SKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTA--ANLDNGTTIPADLVIVGIGT 1303 (1466)
Q Consensus 1226 ~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~--v~l~~g~~i~~D~vv~a~G~ 1303 (1466)
++|++|++++..++++.+.+.+++.+.+.+.++++||+++++..+.+++ ...+.... +...++.++++|++++++|.
T Consensus 157 ~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~ 235 (415)
T COG0446 157 KRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVE-GKGNTLVVERVVGIDGEEIKADLVIIGPGE 235 (415)
T ss_pred HcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEE-cccCcceeeEEEEeCCcEEEeeEEEEeecc
Confidence 9999999999999888754438899999999999999999999999998 33333333 67788999999999999999
Q ss_pred ccCccccccCCc-eeeCCCeEEeCCCcccc-CCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCCCCCC
Q psy2951 1304 VLNTNYLDGKGV-ELNGQKAVVVNEYLETN-VPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSL 1381 (1466)
Q Consensus 1304 ~p~~~~~~~~gl-~~~~~G~i~vd~~~~t~-~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~~~~ 1381 (1466)
.|++.++.+.+. ....+|++.||++++|+ +++|||+|||+..+.... +...+..+|+.|..|++.++.++.+. ..+
T Consensus 236 ~p~~~l~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~~~~-~~~~~~~~~~~a~~~~~i~~~~~~~~-~~~ 313 (415)
T COG0446 236 RPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAET-GKGGRIALWAIAVAAGRIAAENIAGA-LRI 313 (415)
T ss_pred cccHHHHhhCccceeccCCCEEEccccccCCCCCEEeccceEeeecccC-CceeeeechhhHhhhhHHHHHHhccc-ccc
Confidence 999888887652 34556789999999998 999999999999987652 56678999999999999999999988 444
Q ss_pred -CCCccceeccccccEEEEeeCCCCceEEEc---CCcCCceEEEEEEeCCEEEEEEEecCcH
Q psy2951 1382 -STIPFFWTMLFGVGFRFAGYAAGHTQVDIV---GDLEALKFTAYYSNADKVLAILTVGMDP 1439 (1466)
Q Consensus 1382 -~~~p~~w~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1439 (1466)
..++++|.++++......|.... .+..+. ..........+++.+...++.-..+...
T Consensus 314 ~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (415)
T COG0446 314 PGLLGTVISDVGDLCAASTGLTEG-KERGIDVVLVVSGGKDPRAHLYPGAELVGIKLVGDAD 374 (415)
T ss_pred ccccCceEEEEcCeEEEEecCCcc-cccceeeeEEEeccCcccccccCCCCeEEEEEEEcCc
Confidence 67889999999999999998774 322221 0111222234445566666666655543
|
|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-30 Score=331.91 Aligned_cols=349 Identities=21% Similarity=0.187 Sum_probs=239.3
Q ss_pred eEECCCCeeecC--CCCCCCCeEEEEEEcCeEEEEEcccchhccccc---------cccc-cccCCCCCCeEEEEcCchH
Q psy2951 539 CFNIATGDIEDF--PGMDSLPCYKVTIQNDDSVVVQARKDELKNKKR---------KLPM-AKLSSGNKDTFIVVGGGPS 606 (1466)
Q Consensus 539 ~f~~~~G~~~~~--p~~~~l~~~~v~i~~~~~~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~~~vvVIGgG~A 606 (1466)
-|..-+|++|.. ||...+.. .++.+.+...++.+.+... +.+. .+..+.+.++|+|||||||
T Consensus 244 p~p~~~GrVCp~~~~CE~~C~~------~~~pV~I~~ler~i~d~~~~~~~~~~~~~~~~~~~~~~~~gkkVaVIGsGPA 317 (944)
T PRK12779 244 PLPNVTGRVCPQELQCQGVCTH------TKRPIEIGQLEWYLPQHEKLVNPNANERFAGRISPWAAAVKPPIAVVGSGPS 317 (944)
T ss_pred ChhHHhcCcCCCccCHHHhccC------CCcCcchhHHHHHHHHHHHhhchhhhhcccccccccccCCCCeEEEECCCHH
Confidence 455567898877 57763221 1346666666665554311 1100 1112346899999999999
Q ss_pred HHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcccCcccccccCHhHhhhCCcEEEEceEEEEeccccccEEEccC
Q psy2951 607 GATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQD 686 (1466)
Q Consensus 607 Gl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~ 686 (1466)
||+||+.|+++|++ |+++|+...+++.. .....-...+.+++.+..+.+++.|++|+.++.+. +.+++++
T Consensus 318 GLsaA~~Lar~G~~--VtVfE~~~~~GG~l-~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG-------~dit~~~ 387 (944)
T PRK12779 318 GLINAYLLAVEGFP--VTVFEAFHDLGGVL-RYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVG-------KTATLED 387 (944)
T ss_pred HHHHHHHHHHCCCe--EEEEeeCCCCCceE-EccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEec-------cEEeHHH
Confidence 99999999999998 77777765444321 11111112345667777788889999999998542 2355655
Q ss_pred CCEEecCEEEEcCCC-CCCcCCCCCCCC--cEEEecCHHHHHhhcc----------cCCCCCcEEEECCChHHHHHHHHH
Q psy2951 687 GTSIDFTKIYLATGS-SPRTISQADGVN--KVFYLRTVEDANNIAP----------HITPESNVVVIGSSFIGMEAAAFC 753 (1466)
Q Consensus 687 ~~~~~~d~lviAtG~-~~~~~~~~~g~~--~~~~~~~~~~~~~~~~----------~~~~~~~vvVvG~G~~g~e~A~~l 753 (1466)
.....||+||||||+ .|+.+++| |.+ +++...++........ ....+|+|+|||||++|+|+|..+
T Consensus 388 l~~~~yDAV~LAtGA~~pr~l~Ip-G~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta 466 (944)
T PRK12779 388 LKAAGFWKIFVGTGAGLPTFMNVP-GEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTA 466 (944)
T ss_pred hccccCCEEEEeCCCCCCCcCCCC-CCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHH
Confidence 556689999999998 59999999 876 6665554443322211 012589999999999999999999
Q ss_pred hccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCC-CceEEEEC---------C-------
Q psy2951 754 ASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEK-NDVTAANL---------D------- 816 (1466)
Q Consensus 754 ~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~-~~~~~v~~---------~------- 816 (1466)
.+.|.+|+++++++....+... +.+.. ..+.||+++++..+++|..+++ +.+..+.+ .
T Consensus 467 ~R~Ga~Vtlv~rr~~~~mpa~~----~e~~~-a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~ 541 (944)
T PRK12779 467 KRLGGNVTIVYRRTKSEMPARV----EELHH-ALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPK 541 (944)
T ss_pred HHcCCEEEEEEecCcccccccH----HHHHH-HHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeee
Confidence 9999999999988642222211 22233 3467999999999999974322 23433321 1
Q ss_pred -CC--cEEecCEEEEccccccCcccc-ccCCceeeCCCcEEeCC-CCCCCCCCeEEeccccccCCcccCCceeeeccHHH
Q psy2951 817 -NG--TTIPADLVIVGIGTVLNTNYL-DGKGVELNGQKAVVVNE-YLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQL 891 (1466)
Q Consensus 817 -~g--~~i~~D~vi~a~G~~p~~~~~-~~~gl~~~~~G~i~vd~-~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~ 891 (1466)
+| .+++||.||+|+|+.|+..+. ...+++++++|.|.+|+ +++|+.|+|||+|||+..+.. +..
T Consensus 542 ~~G~e~~i~aD~VI~AiG~~p~~~l~~~~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G~~~-----------vv~ 610 (944)
T PRK12779 542 PTGEIERVPVDLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARGGST-----------AIR 610 (944)
T ss_pred cCCceEEEECCEEEEcCCcCCChhhhhcccCceECCCCCEEECCCCCccCCCCEEEEEcCCCChHH-----------HHH
Confidence 12 369999999999999997543 33578889899999996 589999999999999976543 368
Q ss_pred HHHHHHHHHHHhccCCCcCcccCeeeeeecCc
Q psy2951 892 AQYHGRIAALNMVEKKTSLSTIPFFWTMLFGV 923 (1466)
Q Consensus 892 A~~~g~~aA~~i~~~~~~~~~~~~~~~~~~~~ 923 (1466)
|+.+|+.||.+|..... + -|.+|...|..
T Consensus 611 Ai~eGr~AA~~I~~~L~-~--~~~~~~~~~~~ 639 (944)
T PRK12779 611 AAGDGQAAAKEIVGEIP-F--TPAEIKDRVER 639 (944)
T ss_pred HHHHHHHHHHHHHHHhc-c--cccchhhhcch
Confidence 99999999999975322 2 14455444443
|
|
| >PRK09853 putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-30 Score=319.51 Aligned_cols=336 Identities=21% Similarity=0.264 Sum_probs=230.7
Q ss_pred Ccceeeecc--CcchhhhhhhhhhhcccCcc---cc-ccCCCCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCC
Q psy2951 5 PCYKVTIQN--DDSVVVQARKDELKNKKRKL---PM-AKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 78 (1466)
Q Consensus 5 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~ 78 (1466)
||...+.++ ++|+.|..++++........ .. .+....+.++|+||||||||++||+.|++.|++++|++..+..
T Consensus 495 ~Ce~~C~R~~~d~pV~I~~Lkr~a~d~~~~~~~~~~~~~~~~~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~ 574 (1019)
T PRK09853 495 QCQYNCTRLDYDEAVNIRELKKVALEKGWDEYKQRWHKPAGIGSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENA 574 (1019)
T ss_pred hhHHHhcCCCCCCCeeccHHHHHHHhhHHHhcccccCCCCccCCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc
Confidence 454444443 89999999999887542211 11 1112345679999999999999999999999998887654432
Q ss_pred CCCCCCCc-cchhcccCcccccccChhhhhcCCeEEEeCceEEEeccccccEEEecCCcEEecCEEEEccCCCCCCCCCC
Q psy2951 79 FLPYDRVK-LSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQA 157 (1466)
Q Consensus 79 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~ 157 (1466)
. .... ....+. .+.++..+..+++.+.+++++.++.+. +.+.+.....||+||||||+++...+.+
T Consensus 575 G---G~lr~~IP~~R-lp~evL~~die~l~~~GVe~~~gt~Vd---------i~le~L~~~gYDaVILATGA~~~~~l~I 641 (1019)
T PRK09853 575 G---GVVKNIIPQFR-IPAELIQHDIEFVKAHGVKFEFGCSPD---------LTVEQLKNEGYDYVVVAIGADKNGGLKL 641 (1019)
T ss_pred C---cceeeeccccc-ccHHHHHHHHHHHHHcCCEEEeCceeE---------EEhhhheeccCCEEEECcCCCCCCCCCC
Confidence 1 1110 000111 122333444567778899999988651 2222333456999999999985443344
Q ss_pred CCCC-cEEE-ecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhC-C-CEEEEEeecCcccccccCHHHHHHHHHH
Q psy2951 158 DGVN-KVFY-LRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASK-V-KSVTVVGRGAVPFQESLGKEVGERITKL 233 (1466)
Q Consensus 158 ~~~~-~~~~-~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~-g-~~Vtlv~~~~~~~~~~~~~~~~~~l~~~ 233 (1466)
++.. +++. +..+.+..........+++|+|||||++|+|+|..+.+. | .+|++++|.+....+..+ +.+.+.
T Consensus 642 pG~~~gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA~~----eEle~A 717 (1019)
T PRK09853 642 EGGNQNVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPAWR----EEYEEA 717 (1019)
T ss_pred CCccCCceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccccH----HHHHHH
Confidence 4432 3332 111222212233345689999999999999999988887 4 589999987643323332 333444
Q ss_pred HHhCCcEEEcCceEEEEEecC--------------CCCeEEEEcCCCcEEeccEEEEeeccccCccccccCCceecCCcc
Q psy2951 234 FESKGVKFVMKANVSSFEKNE--------------KNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKA 299 (1466)
Q Consensus 234 l~~~GV~i~~~~~v~~i~~~~--------------~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~l~~~gl~~~~~g~ 299 (1466)
+ +.||++++++.+.++..++ .++...+.++++.++++|.||+|+|..|++++++..|++++++|+
T Consensus 718 l-eeGVe~~~~~~p~~I~~dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntelle~~GL~ld~~G~ 796 (1019)
T PRK09853 718 L-EDGVEFKELLNPESFDADGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELLKANGIPLDKKGW 796 (1019)
T ss_pred H-HcCCEEEeCCceEEEEcCCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhHHHhcCccccCCCC
Confidence 3 4699999998888886321 111222334455689999999999999999999888999888899
Q ss_pred EEECCCCCcCCCCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCCC-CCCCCCccccccc
Q psy2951 300 VVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT-SLSTIPFFWTMLF 369 (1466)
Q Consensus 300 i~vd~~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~-~~~~~p~~~s~~~ 369 (1466)
+.||++++|+.|+|||+|||+..+ .++..|+.+|+.||.+|++... .+...|++|+...
T Consensus 797 I~VDetlqTs~pgVFAaGD~a~Gp-----------~tvv~Ai~qGr~AA~nI~~~~~~~~~~~~~~~~~~~ 856 (1019)
T PRK09853 797 PVVDANGETSLTNVYMIGDVQRGP-----------STIVAAIADARRAADAILSREGIRSHQNDKYWNNVE 856 (1019)
T ss_pred EEeCCCcccCCCCEEEEeccccCc-----------hHHHHHHHHHHHHHHHHhhhcCCCcccccccccccc
Confidence 999999999999999999998644 3567899999999999998654 6677788887753
|
|
| >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-30 Score=324.16 Aligned_cols=333 Identities=21% Similarity=0.234 Sum_probs=227.2
Q ss_pred eEECCCCeeecCCCCCCCCeEEEEEEcCeEEEEEcccchhccccccc---ccc-ccCCCCCCeEEEEcCchHHHHHHHHH
Q psy2951 539 CFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQARKDELKNKKRKL---PMA-KLSSGNKDTFIVVGGGPSGATCVETL 614 (1466)
Q Consensus 539 ~f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~vvVIGgG~AGl~aA~~l 614 (1466)
-|..-+|++|..||...++.-. -+..+-+...++.+.+++... .+. +.++.+.++|+|||||||||+||+.|
T Consensus 481 Plp~icGrVC~h~Ce~~C~R~~----~d~pV~I~~Lkr~a~d~~~~~~~~~~~~~~~~~~~kkVaIIGGGPAGLSAA~~L 556 (1012)
T TIGR03315 481 PLPAITGTICDHQCQYKCTRLD----YDESVNIREMKKVAAEKGYDEYKTRWHKPQGKSSAHKVAVIGAGPAGLSAGYFL 556 (1012)
T ss_pred ChhhHhhCcCCcchHHHhcCCC----CCCCCcccHHHHHHHhhHHHhcCccCCCCCCCCCCCcEEEECCCHHHHHHHHHH
Confidence 4455678998889986433221 245666666777666543111 111 12234578999999999999999999
Q ss_pred HHcCCCccEEEEcCCCCCCCCCCccchhcccCcccccccCHhHhhhCCcEEEEceEEEEeccccccEEEccCCCEEecCE
Q psy2951 615 RQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTK 694 (1466)
Q Consensus 615 ~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~d~ 694 (1466)
+++|++ |+++|+++.+++......... ..+.+.+.+..+++.+.||++++++.. . +.+.+.....||+
T Consensus 557 Ar~G~~--VTV~Ek~~~lGG~l~~~IP~~-rlp~e~l~~~ie~l~~~GVe~~~g~~~-d--------~~ve~l~~~gYDa 624 (1012)
T TIGR03315 557 ARAGHP--VTVFEKKEKPGGVVKNIIPEF-RISAESIQKDIELVKFHGVEFKYGCSP-D--------LTVAELKNQGYKY 624 (1012)
T ss_pred HHCCCe--EEEEecccccCceeeeccccc-CCCHHHHHHHHHHHHhcCcEEEEeccc-c--------eEhhhhhcccccE
Confidence 999988 888888765443321111111 122344555567778889999988521 1 1222334567999
Q ss_pred EEEcCCCCC-CcCCCCCCCC-cEEEecCHHHHHhhc---ccCCCCCcEEEECCChHHHHHHHHHhcc-C-CeEEEEeecC
Q psy2951 695 IYLATGSSP-RTISQADGVN-KVFYLRTVEDANNIA---PHITPESNVVVIGSSFIGMEAAAFCASK-V-KSVTVVGRGA 767 (1466)
Q Consensus 695 lviAtG~~~-~~~~~~~g~~-~~~~~~~~~~~~~~~---~~~~~~~~vvVvG~G~~g~e~A~~l~~~-g-~~V~lv~~~~ 767 (1466)
||||||+.+ ..+.++ |.+ .++ ..++....+. .....+++|+|||||++|+|+|..+.+. | .+|++++|..
T Consensus 625 VIIATGA~~~~~l~I~-G~~~~v~--~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 625 VILAIGAWKHGPLRLE-GGGERVL--KSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 701 (1012)
T ss_pred EEECCCCCCCCCCCcC-CCCccee--eHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 999999874 455666 543 332 2333333322 1234599999999999999999998876 6 4899999987
Q ss_pred ccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCC--------------CceEEEECCCCcEEecCEEEEccccc
Q psy2951 768 VPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEK--------------NDVTAANLDNGTTIPADLVIVGIGTV 833 (1466)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~--------------~~~~~v~~~~g~~i~~D~vi~a~G~~ 833 (1466)
...++....+ +.+. .++||+++++..+.+++ ++. ++...+...+..++++|+||+|+|+.
T Consensus 702 ~~~Mpa~~eE----l~~a-leeGVe~~~~~~p~~I~-~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~ 775 (1012)
T TIGR03315 702 KRYMPASREE----LEEA-LEDGVDFKELLSPESFE-DGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQ 775 (1012)
T ss_pred ccccccCHHH----HHHH-HHcCCEEEeCCceEEEE-CCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCc
Confidence 4333333333 3333 35799999998888886 211 11111111222378999999999999
Q ss_pred cCccccccCCceeeCCCcEEeCCC-CCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCC
Q psy2951 834 LNTNYLDGKGVELNGQKAVVVNEY-LETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK 907 (1466)
Q Consensus 834 p~~~~~~~~gl~~~~~G~i~vd~~-~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~ 907 (1466)
|++++++..|++++++|++.+|++ ++|+.|+|||+|||+..|.. +..|+.||+.||.+|++..
T Consensus 776 Pnt~lle~~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~GP~t-----------Vv~AIaqGr~AA~nIl~~~ 839 (1012)
T TIGR03315 776 VDTDLLQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGPAT-----------IVEAIADGRKAANAILSRE 839 (1012)
T ss_pred CChHHHHhcCcccCCCCCEEeCCCCCccCCCCEEEEeCcCCCccH-----------HHHHHHHHHHHHHHHhccc
Confidence 999999889999999999999985 89999999999999866543 4689999999999998754
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. |
| >TIGR01292 TRX_reduct thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=295.48 Aligned_cols=278 Identities=23% Similarity=0.315 Sum_probs=210.2
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCc------cchhc-ccCcccccccCHhHhhhCCcEEEEc
Q psy2951 596 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK------LSKQL-DIKADSILLRTEEFYKDNDIHVIKG 668 (1466)
Q Consensus 596 ~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~gv~~~~~ 668 (1466)
+||+|||||+|||+||..|++.|++ |+++|+... ++.... ++... .....++..++.+.+++.++++++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~--v~lie~~~~-gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~- 76 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLK--TLIIEGMEP-GGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY- 76 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCC--EEEEeccCC-CcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-
Confidence 5899999999999999999999988 778887641 111100 00000 022345566777778889999999
Q ss_pred eEEEEeccccc--cEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCC-----cEEEecCHHHHHhhcccCCCCCcEEEEC
Q psy2951 669 KKIISDSELNE--KKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-----KVFYLRTVEDANNIAPHITPESNVVVIG 741 (1466)
Q Consensus 669 ~~v~~i~~~~~--~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~vvVvG 741 (1466)
++|..+ +... ..+.+.++.++.||+||+|||+.|..|++| |.+ .++..... .....++++|+|||
T Consensus 77 ~~v~~v-~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~i~-g~~~~~~~~~~~~~~~------~~~~~~~~~v~ViG 148 (300)
T TIGR01292 77 EEVIKV-DLSDRPFKVKTGDGKEYTAKAVIIATGASARKLGIP-GEDEFLGRGVSYCATC------DGPFFKNKEVAVVG 148 (300)
T ss_pred EEEEEE-EecCCeeEEEeCCCCEEEeCEEEECCCCCcccCCCC-ChhhcCCccEEEeeec------ChhhcCCCEEEEEC
Confidence 668888 5544 356666778999999999999999988888 754 22222111 11223589999999
Q ss_pred CChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhc-CcEEEccceEEEEEecCCCceEEEEC-----
Q psy2951 742 SSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESK-GVKFVMKANVSSFEKNEKNDVTAANL----- 815 (1466)
Q Consensus 742 ~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~-gv~~~~~~~v~~i~~~~~~~~~~v~~----- 815 (1466)
+|++|+|+|..|++.+.+|+++.+.+... ....+.+.++++ ||++++++++++++.. +++..+.+
T Consensus 149 ~G~~~~e~a~~l~~~~~~V~~v~~~~~~~-------~~~~~~~~l~~~~gv~~~~~~~v~~i~~~--~~~~~v~~~~~~~ 219 (300)
T TIGR01292 149 GGDSAIEEALYLTRIAKKVTLVHRRDKFR-------AEKILLDRLRKNPNIEFLWNSTVKEIVGD--NKVEGVKIKNTVT 219 (300)
T ss_pred CChHHHHHHHHHHhhcCEEEEEEeCcccC-------cCHHHHHHHHhCCCeEEEeccEEEEEEcc--CcEEEEEEEecCC
Confidence 99999999999999999999999987542 123456667777 9999999999999843 24444443
Q ss_pred CCCcEEecCEEEEccccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHH
Q psy2951 816 DNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYH 895 (1466)
Q Consensus 816 ~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~ 895 (1466)
.+++++++|.+|+|+|++|+.++++.. ++++++|++.+|++++|++|+||++|||+.... ..+..|+.|
T Consensus 220 g~~~~i~~D~vi~a~G~~~~~~~l~~~-~~~~~~g~i~v~~~~~t~~~~vya~GD~~~~~~----------~~~~~A~~~ 288 (300)
T TIGR01292 220 GEEEELKVDGVFIAIGHEPNTELLKGL-LELDEGGYIVTDEGMRTSVPGVFAAGDVRDKGY----------RQAVTAAGD 288 (300)
T ss_pred CceEEEEccEEEEeeCCCCChHHHHHh-heecCCCcEEECCCCccCCCCEEEeecccCcch----------hhhhhhhhh
Confidence 223579999999999999999888877 778888999999999999999999999997311 235689999
Q ss_pred HHHHHHHhcc
Q psy2951 896 GRIAALNMVE 905 (1466)
Q Consensus 896 g~~aA~~i~~ 905 (1466)
|+.||.+|..
T Consensus 289 g~~aa~~i~~ 298 (300)
T TIGR01292 289 GCIAALSAER 298 (300)
T ss_pred HHHHHHHHHh
Confidence 9999999853
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). |
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-30 Score=315.03 Aligned_cols=282 Identities=25% Similarity=0.347 Sum_probs=214.5
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCC---ccchhc---ccCcccccccCHhHhhhCCcEEE
Q psy2951 593 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV---KLSKQL---DIKADSILLRTEEFYKDNDIHVI 666 (1466)
Q Consensus 593 ~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~gv~~~ 666 (1466)
...+||+|||||||||+||..|++.|++ ++++++. +++... .+.... .....++...+.+.+++.+++++
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~--v~li~~~--~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~ 285 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLR--TAMVAER--IGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLM 285 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCc--EEEEecC--CCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEE
Confidence 4579999999999999999999999998 5555542 222111 111111 12334555666777888899999
Q ss_pred EceEEEEecccc--ccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCC-----cEEEecCHHHHHhhcccCCCCCcEEE
Q psy2951 667 KGKKIISDSELN--EKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-----KVFYLRTVEDANNIAPHITPESNVVV 739 (1466)
Q Consensus 667 ~~~~v~~i~~~~--~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~vvV 739 (1466)
.+++|..+ +.. ...+.++++..+.||++|+|||+.|+.|++| |.+ .++.... +......+++|+|
T Consensus 286 ~~~~V~~I-~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~~~ip-G~~~~~~~~v~~~~~------~~~~~~~~k~VvV 357 (515)
T TIGR03140 286 ENQRAKKI-ETEDGLIVVTLESGEVLKAKSVIVATGARWRKLGVP-GEKEYIGKGVAYCPH------CDGPFFKGKDVAV 357 (515)
T ss_pred cCCEEEEE-EecCCeEEEEECCCCEEEeCEEEECCCCCcCCCCCC-CHHHcCCCeEEEeec------cChhhcCCCEEEE
Confidence 99989888 443 3566677788899999999999999999888 753 2222211 1122335899999
Q ss_pred ECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHh-cCcEEEccceEEEEEecCCCceEEEECCC-
Q psy2951 740 IGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFES-KGVKFVMKANVSSFEKNEKNDVTAANLDN- 817 (1466)
Q Consensus 740 vG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~-~gv~~~~~~~v~~i~~~~~~~~~~v~~~~- 817 (1466)
||+|++|+|+|..|++.+.+||++++.+.+.. ...+.+.+++ +||++++++.+++++ ++++++..+.+.+
T Consensus 358 iGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~-------~~~l~~~l~~~~gV~i~~~~~v~~i~-~~~~~v~~v~~~~~ 429 (515)
T TIGR03140 358 IGGGNSGIEAAIDLAGIVRHVTVLEFADELKA-------DKVLQDKLKSLPNVDILTSAQTTEIV-GDGDKVTGIRYQDR 429 (515)
T ss_pred ECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh-------hHHHHHHHhcCCCCEEEECCeeEEEE-cCCCEEEEEEEEEC
Confidence 99999999999999999999999998875431 2345666766 699999999999998 3344555565543
Q ss_pred --C--cEEecCEEEEccccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHH
Q psy2951 818 --G--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQ 893 (1466)
Q Consensus 818 --g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~ 893 (1466)
+ +++++|.|++++|++|++++++.. ++++++|+|.+|+++||++|+|||+|||+..+... +..|+
T Consensus 430 ~~~~~~~i~~D~vi~a~G~~Pn~~~l~~~-~~~~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~~~----------~~~A~ 498 (515)
T TIGR03140 430 NSGEEKQLDLDGVFVQIGLVPNTEWLKDA-VELNRRGEIVIDERGRTSVPGIFAAGDVTTVPYKQ----------IIIAM 498 (515)
T ss_pred CCCcEEEEEcCEEEEEeCCcCCchHHhhh-cccCCCCeEEECCCCCCCCCCEEEcccccCCccce----------EEEEE
Confidence 2 479999999999999999998876 88888899999999999999999999999865421 13699
Q ss_pred HHHHHHHHHhcc
Q psy2951 894 YHGRIAALNMVE 905 (1466)
Q Consensus 894 ~~g~~aA~~i~~ 905 (1466)
.+|..||.+|..
T Consensus 499 ~~G~~Aa~~i~~ 510 (515)
T TIGR03140 499 GEGAKAALSAFD 510 (515)
T ss_pred ccHHHHHHHHHH
Confidence 999999998864
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >PRK10262 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.6e-30 Score=296.30 Aligned_cols=290 Identities=20% Similarity=0.261 Sum_probs=205.8
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccch---hc----ccCcccccccCHhHhhhCCcEE
Q psy2951 593 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSK---QL----DIKADSILLRTEEFYKDNDIHV 665 (1466)
Q Consensus 593 ~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~gv~~ 665 (1466)
...++|+|||||||||+||..|+++|++ +++++.... +........ .. ..+...+..++.+....+++++
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~--~~~ie~~~~-gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQ--PVLITGMEK-GGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEI 80 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCC--eEEEEeecC-CCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEE
Confidence 4578999999999999999999999998 555553321 111000000 00 1223334555566667778888
Q ss_pred EEceEEEEeccccccEEEcc-CCCEEecCEEEEcCCCCCCcCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCCh
Q psy2951 666 IKGKKIISDSELNEKKIKLQ-DGTSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSF 744 (1466)
Q Consensus 666 ~~~~~v~~i~~~~~~~v~~~-~~~~~~~d~lviAtG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~ 744 (1466)
+.++ |..+ +.....+.+. +...+.||+||||||+.|+.|++| |.+. +..+.+..+..+......+++|+|||+|+
T Consensus 81 ~~~~-v~~v-~~~~~~~~v~~~~~~~~~d~vilAtG~~~~~~~i~-g~~~-~~~~~v~~~~~~~~~~~~g~~vvVvGgG~ 156 (321)
T PRK10262 81 IFDH-INKV-DLQNRPFRLTGDSGEYTCDALIIATGASARYLGLP-SEEA-FKGRGVSACATCDGFFYRNQKVAVIGGGN 156 (321)
T ss_pred EeeE-EEEE-EecCCeEEEEecCCEEEECEEEECCCCCCCCCCCC-CHHH-cCCCcEEEeecCCHHHcCCCEEEEECCCH
Confidence 7775 6666 5444443322 234789999999999999999998 7541 11111111111222233589999999999
Q ss_pred HHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCC------C
Q psy2951 745 IGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDN------G 818 (1466)
Q Consensus 745 ~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~------g 818 (1466)
+|+|+|..|++.+++|+++++.+... .++.+.+.+.+.|++.||++++++.+++++. ++..+..+.+.+ .
T Consensus 157 ~g~e~A~~l~~~~~~Vtlv~~~~~~~---~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~-~~~~~~~v~~~~~~~~~~~ 232 (321)
T PRK10262 157 TAVEEALYLSNIASEVHLIHRRDGFR---AEKILIKRLMDKVENGNIILHTNRTLEEVTG-DQMGVTGVRLRDTQNSDNI 232 (321)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCccC---CCHHHHHHHHhhccCCCeEEEeCCEEEEEEc-CCccEEEEEEEEcCCCCeE
Confidence 99999999999999999999987542 3466778888889999999999999999984 333444455433 2
Q ss_pred cEEecCEEEEccccccCccccccCCceeeCCCcEEeCC-----CCCCCCCCeEEeccccccCCcccCCceeeeccHHHHH
Q psy2951 819 TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNE-----YLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQ 893 (1466)
Q Consensus 819 ~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~-----~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~ 893 (1466)
+++++|.|++++|++|+..+++. ++.++ +|+|.+|+ +++|++|+|||+|||+..+... ...|+
T Consensus 233 ~~i~~D~vv~a~G~~p~~~l~~~-~l~~~-~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~~~~----------~~~A~ 300 (321)
T PRK10262 233 ESLDVAGLFVAIGHSPNTAIFEG-QLELE-NGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQ----------AITSA 300 (321)
T ss_pred EEEECCEEEEEeCCccChhHhhc-ccccc-CCEEEECCCCcccccccCCCCEEECeeccCCCcce----------EEEEe
Confidence 47999999999999999987764 56654 58899997 6899999999999999654321 12588
Q ss_pred HHHHHHHHHhcc
Q psy2951 894 YHGRIAALNMVE 905 (1466)
Q Consensus 894 ~~g~~aA~~i~~ 905 (1466)
.+|..||..|..
T Consensus 301 ~~g~~Aa~~~~~ 312 (321)
T PRK10262 301 GTGCMAALDAER 312 (321)
T ss_pred hhHHHHHHHHHH
Confidence 999999988753
|
|
| >PRK12831 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=304.83 Aligned_cols=284 Identities=23% Similarity=0.313 Sum_probs=211.4
Q ss_pred CCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCC----CCCCCCchhhccCcccccccChhhhccCCcEEEc
Q psy2951 1063 SGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP----YDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIK 1138 (1466)
Q Consensus 1063 ~~~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1138 (1466)
....++|+|||||+||++||..|++.|+ +|+|||+++.++ |..|. +..+.+.+.....+++++.|+++++
T Consensus 137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G~--~V~v~e~~~~~GG~l~~gip~----~~l~~~~~~~~~~~~~~~~gv~i~~ 210 (464)
T PRK12831 137 EKKGKKVAVIGSGPAGLTCAGDLAKMGY--DVTIFEALHEPGGVLVYGIPE----FRLPKETVVKKEIENIKKLGVKIET 210 (464)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCCC--eEEEEecCCCCCCeeeecCCC----ccCCccHHHHHHHHHHHHcCCEEEc
Confidence 3456899999999999999999999999 999999877543 22121 0111122323334567788999999
Q ss_pred CCeEEEeecCCCCeEEecCC-cEEecCeEEEecCC-CCCcCCCCCCCC--cEEEecCHHHHHhhhc--------ccCCCC
Q psy2951 1139 GKKIISDSELNEKKIKLQDG-TSIDFTKIYLATGS-SPRTISQADGVN--KVFYLRTVEDANNIAP--------HITPES 1206 (1466)
Q Consensus 1139 ~~~v~~i~d~~~~~v~~~~g-~~~~yd~lvlAtG~-~~~~~~~~~g~~--~v~~~~~~~~~~~l~~--------~~~~~~ 1206 (1466)
++.+. +.+.+++. ..+.||+||||||+ .|+.+++| |.+ +++...++.+...+.. ....++
T Consensus 211 ~~~v~-------~~v~~~~~~~~~~~d~viiAtGa~~~~~l~ip-G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk 282 (464)
T PRK12831 211 NVVVG-------KTVTIDELLEEEGFDAVFIGSGAGLPKFMGIP-GENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGK 282 (464)
T ss_pred CCEEC-------CcCCHHHHHhccCCCEEEEeCCCCCCCCCCCC-CcCCcCcEEHHHHHHHHHhcccccccccCcccCCC
Confidence 98442 12333332 34579999999998 79999999 876 7877665554433221 234589
Q ss_pred eEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEc
Q psy2951 1207 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANL 1286 (1466)
Q Consensus 1207 ~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l 1286 (1466)
+|+|||+|++|+|+|..+.+.|.+|+++++..... ++.... .+ +.+++.||+++++..+.++...++|++..|++
T Consensus 283 ~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~---m~a~~~-e~-~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~ 357 (464)
T PRK12831 283 KVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEE---LPARVE-EV-HHAKEEGVIFDLLTNPVEILGDENGWVKGMKC 357 (464)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCEEEEEeecCccc---CCCCHH-HH-HHHHHcCCEEEecccceEEEecCCCeEEEEEE
Confidence 99999999999999999999999999999875321 111111 12 23567899999999999997334566665554
Q ss_pred C------------------CCC--eeecCEEEEeeccccCcccccc-CCceeeCCCeEEeCCC-ccccCCCEEEeccccc
Q psy2951 1287 D------------------NGT--TIPADLVIVGIGTVLNTNYLDG-KGVELNGQKAVVVNEY-LETNVPGVYAGGDIAY 1344 (1466)
Q Consensus 1287 ~------------------~g~--~i~~D~vv~a~G~~p~~~~~~~-~gl~~~~~G~i~vd~~-~~t~~~~v~a~GD~a~ 1344 (1466)
. +|+ ++++|.||+|+|..|++.++.. .|+.++.+|+|.||++ ++|+.|+|||+|||+.
T Consensus 358 ~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~ 437 (464)
T PRK12831 358 IKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEETGLTSKEGVFAGGDAVT 437 (464)
T ss_pred EEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCChhhhcccCCceECCCCcEEECCCCCccCCCCEEEeCCCCC
Confidence 2 232 6899999999999999988876 7899988899999987 9999999999999987
Q ss_pred CCCccCCCceeeeecHHHHHHHHHHHHHHhcC
Q psy2951 1345 APLHSFYNKNASIGHYQLAQYHGRIAALNMVE 1376 (1466)
Q Consensus 1345 ~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g 1376 (1466)
.+.. +..|+.+|+.||.+|..
T Consensus 438 g~~~-----------v~~Ai~~G~~AA~~I~~ 458 (464)
T PRK12831 438 GAAT-----------VILAMGAGKKAAKAIDE 458 (464)
T ss_pred CchH-----------HHHHHHHHHHHHHHHHH
Confidence 5543 37899999999999863
|
|
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=306.99 Aligned_cols=280 Identities=21% Similarity=0.287 Sum_probs=211.6
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCC----CCCCCchhhccCcccccccChhhhccCCcEEEcC
Q psy2951 1064 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY----DRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKG 1139 (1466)
Q Consensus 1064 ~~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 1139 (1466)
...++|+|||||+||++||..|++.|+ +|+|||+++.++. ..+. + ....++.....+++.+.+++++.+
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~--~V~vie~~~~~GG~l~~gip~----~-~~~~~~~~~~~~~l~~~gv~~~~~ 203 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGH--SVTVFEALHKPGGVVTYGIPE----F-RLPKEIVVTEIKTLKKLGVTFRMN 203 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCC--cEEEEecCCCCCcEeeecCCC----c-cCCHHHHHHHHHHHHhCCcEEEeC
Confidence 346799999999999999999999998 9999999875432 1111 0 011122222334567789999988
Q ss_pred CeEEEeecCCCCeEEecCCcEEecCeEEEecCC-CCCcCCCCCCCC--cEEEecCHHHHHhhhc---------ccCCCCe
Q psy2951 1140 KKIISDSELNEKKIKLQDGTSIDFTKIYLATGS-SPRTISQADGVN--KVFYLRTVEDANNIAP---------HITPESN 1207 (1466)
Q Consensus 1140 ~~v~~i~d~~~~~v~~~~g~~~~yd~lvlAtG~-~~~~~~~~~g~~--~v~~~~~~~~~~~l~~---------~~~~~~~ 1207 (1466)
+.+ . +.+.+++. ...||+||||||+ .|+.+++| |.+ +++...++.+...+.. ....+++
T Consensus 204 ~~v-~------~~v~~~~~-~~~yd~viiAtGa~~p~~~~ip-G~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~ 274 (449)
T TIGR01316 204 FLV-G------KTATLEEL-FSQYDAVFIGTGAGLPKLMNIP-GEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKS 274 (449)
T ss_pred Ccc-C------CcCCHHHH-HhhCCEEEEeCCCCCCCcCCCC-CCCCCCcEEHHHHHHHHhhcccccccccCCcccCCCe
Confidence 733 1 23444433 3579999999998 79999999 876 7777665544333321 1235799
Q ss_pred EEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcC
Q psy2951 1208 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLD 1287 (1466)
Q Consensus 1208 vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~ 1287 (1466)
|+|||+|++|+|+|..+++.|.+||++++.++..... .....+.+++.||+|+++..++++...+++++..|++.
T Consensus 275 VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~-----~~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~ 349 (449)
T TIGR01316 275 VVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTA-----RVEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFR 349 (449)
T ss_pred EEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCC-----CHHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEE
Confidence 9999999999999999999999999999876422111 12233557889999999999999973344666666553
Q ss_pred ---------CC-----------CeeecCEEEEeeccccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCC
Q psy2951 1288 ---------NG-----------TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPL 1347 (1466)
Q Consensus 1288 ---------~g-----------~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~ 1347 (1466)
+| .++++|.||+|+|..|++.+++..|+.++.+|+|.||++++|+.|+|||+|||+..+.
T Consensus 350 ~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~gl~~~~~G~i~vd~~~~Ts~~~VfA~GD~~~g~~ 429 (449)
T TIGR01316 350 KMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRLKTSERGTIVVDEDQRTSIPGVFAGGDIILGAA 429 (449)
T ss_pred EEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchhhhccCcccCCCCeEEeCCCCccCCCCEEEecCCCCCcH
Confidence 33 2689999999999999999999889999888999999999999999999999986544
Q ss_pred ccCCCceeeeecHHHHHHHHHHHHHHhc
Q psy2951 1348 HSFYNKNASIGHYQLAQYHGRIAALNMV 1375 (1466)
Q Consensus 1348 ~~~~~~~~~~~~~~~A~~qa~~aa~~i~ 1375 (1466)
.+..|+.||+.||.+|.
T Consensus 430 -----------~v~~Ai~~G~~AA~~I~ 446 (449)
T TIGR01316 430 -----------TVIRAMGQGKRAAKSIN 446 (449)
T ss_pred -----------HHHHHHHHHHHHHHHHH
Confidence 34789999999999985
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
| >COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=282.19 Aligned_cols=284 Identities=24% Similarity=0.325 Sum_probs=215.2
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCC---ccchhcc----cCcccccccCHhHhhhCCcEEE
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV---KLSKQLD----IKADSILLRTEEFYKDNDIHVI 666 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~---~~~~~~~----~~~~~~~~~~~~~~~~~gv~~~ 666 (1466)
..+||+|||||||||+||.++++.+.++.| +++.... ++... ....+++ ....++..+..++....++++.
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~l-i~~~~~~-gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~ 79 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVL-ILEGGEP-GGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIV 79 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEE-EEecCCc-CCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEE
Confidence 368999999999999999999999987433 3333211 11111 1111111 4556677777778888899999
Q ss_pred EceEEEEecccc-ccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCChH
Q psy2951 667 KGKKIISDSELN-EKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFI 745 (1466)
Q Consensus 667 ~~~~v~~i~~~~-~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~ 745 (1466)
..+ |..+.... .+.|+++++. +++++||||||..++.|.+| |.. -+..+.+..+..+.. +.++|+|+|||||++
T Consensus 80 ~~~-v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~~~~-~e~-e~~g~gv~yc~~cdg-~~~~k~v~ViGgG~s 154 (305)
T COG0492 80 EDE-VEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARKLGVP-GEE-EFEGKGVSYCATCDG-FFKGKDVVVIGGGDS 154 (305)
T ss_pred EEE-EEEEeecCceEEEEECCCe-EEEeEEEECcCCcccCCCCC-cch-hhcCCceEEeeecCc-cccCCeEEEEcCCHH
Confidence 844 88883334 5778887776 99999999999999999888 644 222233333333444 456899999999999
Q ss_pred HHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhc-CcEEEccceEEEEEecCCCceEEEECCCC----cE
Q psy2951 746 GMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESK-GVKFVMKANVSSFEKNEKNDVTAANLDNG----TT 820 (1466)
Q Consensus 746 g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~-gv~~~~~~~v~~i~~~~~~~~~~v~~~~g----~~ 820 (1466)
|+|-|.+|.+.+++||+++|.+.... .+.+.+.++++ +|++++++.+.++.. ++ +..+.+.+. ++
T Consensus 155 Ave~Al~L~~~a~~Vtlv~r~~~~ra-------~~~~~~~l~~~~~i~~~~~~~i~ei~G-~~--v~~v~l~~~~~~~~~ 224 (305)
T COG0492 155 AVEEALYLSKIAKKVTLVHRRDEFRA-------EEILVERLKKNVKIEVLTNTVVKEILG-DD--VEGVVLKNVKGEEKE 224 (305)
T ss_pred HHHHHHHHHHhcCeEEEEecCcccCc-------CHHHHHHHHhcCCeEEEeCCceeEEec-Cc--cceEEEEecCCceEE
Confidence 99999999999999999999985432 34455666665 899999999999983 22 455665553 37
Q ss_pred EecCEEEEccccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHH
Q psy2951 821 IPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAA 900 (1466)
Q Consensus 821 i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA 900 (1466)
+++|.+++++|..|++++++..++ ++++|+|.+|+.++||+|+|||+||++..+... +..|..+|.+||
T Consensus 225 ~~~~gvf~~iG~~p~~~~~~~~~~-~~~~g~I~v~~~~~TsvpGifAaGDv~~~~~rq----------i~ta~~~G~~Aa 293 (305)
T COG0492 225 LPVDGVFIAIGHLPNTELLKGLGV-LDENGYIVVDEEMETSVPGIFAAGDVADKNGRQ----------IATAAGDGAIAA 293 (305)
T ss_pred EEeceEEEecCCCCchHHHhhccc-cCCCCcEEcCCCcccCCCCEEEeEeeccCcccE----------EeehhhhHHHHH
Confidence 899999999999999999998877 889999999999999999999999999876531 246888888888
Q ss_pred HHhcc
Q psy2951 901 LNMVE 905 (1466)
Q Consensus 901 ~~i~~ 905 (1466)
.++..
T Consensus 294 ~~a~~ 298 (305)
T COG0492 294 LSAER 298 (305)
T ss_pred HHHHH
Confidence 87643
|
|
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=328.67 Aligned_cols=336 Identities=19% Similarity=0.239 Sum_probs=236.7
Q ss_pred eEECCCCeeecC--CCCCCCCeEEEEEEcCeEEEEEcccchhcccccccccc-ccCCCCCCeEEEEcCchHHHHHHHHHH
Q psy2951 539 CFNIATGDIEDF--PGMDSLPCYKVTIQNDDSVVVQARKDELKNKKRKLPMA-KLSSGNKDTFIVVGGGPSGATCVETLR 615 (1466)
Q Consensus 539 ~f~~~~G~~~~~--p~~~~l~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~vvVIGgG~AGl~aA~~l~ 615 (1466)
-|..-+|++|.. ||...+.. . ..++.+.+...++.+.+......+. +..+.+.++|+|||||||||+||..|+
T Consensus 375 p~p~~~grvCp~~~~Ce~~C~~--~--~~~~pv~I~~ler~~~d~~~~~~~~~~~~~~~~~kVaIIG~GPAGLsaA~~La 450 (1006)
T PRK12775 375 IFPSICGRVCPQETQCEAQCII--A--KKHESVGIGRLERFVGDNARAKPVKPPRFSKKLGKVAICGSGPAGLAAAADLV 450 (1006)
T ss_pred ChHHHhcCcCCCCCCHHHhCcC--C--CCCCCeeecHHHHHHHHHHHHcCCCCCCCCCCCCEEEEECCCHHHHHHHHHHH
Confidence 455567888886 78763222 1 1356777888888777664322222 122345789999999999999999999
Q ss_pred HcCCCccEEEEcCCCCCCCCCCccchhcccCcccccccCHhHhhhCCcEEEEceEEEEeccccccEEEccCC-CEEecCE
Q psy2951 616 QNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDG-TSIDFTK 694 (1466)
Q Consensus 616 ~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~-~~~~~d~ 694 (1466)
++|++ |+++++.+.+++.. .........+.+++.+..+++++.|++++.++.+ .. .+++.+. ....||+
T Consensus 451 ~~G~~--VtV~E~~~~~GG~l-~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~v-g~------~~~~~~l~~~~~yDa 520 (1006)
T PRK12775 451 KYGVD--VTVYEALHVVGGVL-QYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVI-GK------TFTVPQLMNDKGFDA 520 (1006)
T ss_pred HcCCc--EEEEecCCCCccee-eccCCccCCCHHHHHHHHHHHHHCCCEEEeCCcc-CC------ccCHHHHhhccCCCE
Confidence 99998 77777765543221 1111111234566777788889999999999743 21 1222211 1346999
Q ss_pred EEEcCCC-CCCcCCCCCCCC--cEEEecCHHHHHhhc---------ccCCCCCcEEEECCChHHHHHHHHHhccCC-eEE
Q psy2951 695 IYLATGS-SPRTISQADGVN--KVFYLRTVEDANNIA---------PHITPESNVVVIGSSFIGMEAAAFCASKVK-SVT 761 (1466)
Q Consensus 695 lviAtG~-~~~~~~~~~g~~--~~~~~~~~~~~~~~~---------~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~-~V~ 761 (1466)
||||||+ .|+.+++| |.+ +++...++....++. .....+|+|+|||||++|+++|..+.++|. .|+
T Consensus 521 ViIATGa~~pr~l~Ip-G~~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vt 599 (1006)
T PRK12775 521 VFLGVGAGAPTFLGIP-GEFAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVR 599 (1006)
T ss_pred EEEecCCCCCCCCCCC-CcCCCCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEE
Confidence 9999998 58999999 865 666554444333221 112368999999999999999999999986 588
Q ss_pred EEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECC-----------------CC--cEEe
Q psy2951 762 VVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLD-----------------NG--TTIP 822 (1466)
Q Consensus 762 lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~-----------------~g--~~i~ 822 (1466)
+++|.....++....+ .+.+++.||+++++..+.++..++++++..+.+. +| .+++
T Consensus 600 iv~rr~~~em~a~~~e-----~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~ 674 (1006)
T PRK12775 600 CVYRRSEAEAPARIEE-----IRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLE 674 (1006)
T ss_pred EEeecCcccCCCCHHH-----HHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEE
Confidence 8988754322211111 2456788999999999999975556666554331 12 2699
Q ss_pred cCEEEEccccccCcccccc-CCceeeCCCcEEeCC-----CCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHH
Q psy2951 823 ADLVIVGIGTVLNTNYLDG-KGVELNGQKAVVVNE-----YLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHG 896 (1466)
Q Consensus 823 ~D~vi~a~G~~p~~~~~~~-~gl~~~~~G~i~vd~-----~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g 896 (1466)
+|.||+|+|+.|++.++.. .++.++++|.|.+|+ +++|+.|+|||+||++..+. ++..|+.+|
T Consensus 675 ~D~Vi~AiG~~p~~~~~~~~~gl~l~~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~~G~~-----------~vv~Ai~~G 743 (1006)
T PRK12775 675 CDTVIYALGTKANPIITQSTPGLALNKWGNIAADDGKLESTQSTNLPGVFAGGDIVTGGA-----------TVILAMGAG 743 (1006)
T ss_pred cCEEEECCCcCCChhhhhccCCcccCCCCcEEeCCCccccCcCCCCCCEEEecCcCCCcc-----------HHHHHHHHH
Confidence 9999999999999877654 478888889999996 78999999999999987654 346899999
Q ss_pred HHHHHHhcc
Q psy2951 897 RIAALNMVE 905 (1466)
Q Consensus 897 ~~aA~~i~~ 905 (1466)
+.||.+|..
T Consensus 744 r~AA~~I~~ 752 (1006)
T PRK12775 744 RRAARSIAT 752 (1006)
T ss_pred HHHHHHHHH
Confidence 999999864
|
|
| >COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-29 Score=279.30 Aligned_cols=286 Identities=24% Similarity=0.316 Sum_probs=211.4
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCccchhc-----ccCcccccccChhhhhcCCeEEEeC
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL-----DIKADSILLRTEEFYKDNDIHVIKG 116 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (1466)
+++||+|||||||||+||.++++.+.++.|++-......-.......+.+ .....++.....++....++++...
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~~ 81 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVED 81 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEEE
Confidence 46899999999999999999999999855544332221100111111111 2345566777777888889998884
Q ss_pred ceEEEecccc-ccEEEecCCcEEecCEEEEccCCCCCCCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHH
Q psy2951 117 KKIISDSELN-EKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGM 195 (1466)
Q Consensus 117 ~~v~~~~~~~-~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~ 195 (1466)
... ...... .++|+++++. +++++||||||..++.+. .++.. -+..+.+..+..++. ++++|+|+|||||++++
T Consensus 82 ~v~-~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~~-~~~e~-e~~g~gv~yc~~cdg-~~~~k~v~ViGgG~sAv 156 (305)
T COG0492 82 EVE-KVELEGGPFKVKTDKGT-YEAKAVIIATGAGARKLG-VPGEE-EFEGKGVSYCATCDG-FFKGKDVVVIGGGDSAV 156 (305)
T ss_pred EEE-EEeecCceEEEEECCCe-EEEeEEEECcCCcccCCC-CCcch-hhcCCceEEeeecCc-cccCCeEEEEcCCHHHH
Confidence 333 322333 6788887777 999999999999988654 32322 233345555555566 67789999999999999
Q ss_pred HHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhC-CcEEEcCceEEEEEecCCCCeEEEEcCCC----cEEe
Q psy2951 196 EAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESK-GVKFVMKANVSSFEKNEKNDVTAANLDNG----TTIP 270 (1466)
Q Consensus 196 e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~-GV~i~~~~~v~~i~~~~~~~~~~v~~~~g----~~i~ 270 (1466)
|.|..|.+.+++||+++|.+.... .+.+.+.++++ +|++++++.+.++.+++ +..+.+.+. +.+.
T Consensus 157 e~Al~L~~~a~~Vtlv~r~~~~ra-------~~~~~~~l~~~~~i~~~~~~~i~ei~G~~---v~~v~l~~~~~~~~~~~ 226 (305)
T COG0492 157 EEALYLSKIAKKVTLVHRRDEFRA-------EEILVERLKKNVKIEVLTNTVVKEILGDD---VEGVVLKNVKGEEKELP 226 (305)
T ss_pred HHHHHHHHhcCeEEEEecCcccCc-------CHHHHHHHHhcCCeEEEeCCceeEEecCc---cceEEEEecCCceEEEE
Confidence 999999999999999999865432 23445555655 89999999999998753 334444432 3789
Q ss_pred ccEEEEeeccccCccccccCCceecCCccEEECCCCCcCCCCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHH
Q psy2951 271 ADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALN 350 (1466)
Q Consensus 271 ~D~Vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~ 350 (1466)
+|-+++++|..|++++++..++ ++++|+|.+|+.++||+|+|||+||++..+. .++..|..+|.+||.+
T Consensus 227 ~~gvf~~iG~~p~~~~~~~~~~-~~~~g~I~v~~~~~TsvpGifAaGDv~~~~~----------rqi~ta~~~G~~Aa~~ 295 (305)
T COG0492 227 VDGVFIAIGHLPNTELLKGLGV-LDENGYIVVDEEMETSVPGIFAAGDVADKNG----------RQIATAAGDGAIAALS 295 (305)
T ss_pred eceEEEecCCCCchHHHhhccc-cCCCCcEEcCCCcccCCCCEEEeEeeccCcc----------cEEeehhhhHHHHHHH
Confidence 9999999999999999988777 8889999999999999999999999987642 1455688888888887
Q ss_pred hcC
Q psy2951 351 MVE 353 (1466)
Q Consensus 351 i~~ 353 (1466)
+..
T Consensus 296 a~~ 298 (305)
T COG0492 296 AER 298 (305)
T ss_pred HHH
Confidence 654
|
|
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-29 Score=307.70 Aligned_cols=282 Identities=26% Similarity=0.354 Sum_probs=215.8
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCC---ccch---hcccCcccccccCHhHhhhCCcEEE
Q psy2951 593 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV---KLSK---QLDIKADSILLRTEEFYKDNDIHVI 666 (1466)
Q Consensus 593 ~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~gv~~~ 666 (1466)
...+||+||||||||++||.+|+++|++ ++++++. +++... .... .......++...+.+.+++++++++
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~--v~li~~~--~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~ 284 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIR--TGIVAER--FGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIM 284 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCc--EEEEecC--CCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEE
Confidence 4468999999999999999999999998 5666543 121110 0110 1113444566677778888999999
Q ss_pred EceEEEEecccc--ccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCC-----cEEEecCHHHHHhhcccCCCCCcEEE
Q psy2951 667 KGKKIISDSELN--EKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-----KVFYLRTVEDANNIAPHITPESNVVV 739 (1466)
Q Consensus 667 ~~~~v~~i~~~~--~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~vvV 739 (1466)
.+++|..+ +.. .+.+.+.++.++.||+||+|||++|+.+++| |.+ .+++... +.....++|+|+|
T Consensus 285 ~~~~V~~I-~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~~~ip-G~~~~~~~~v~~~~~------~~~~~~~gk~VvV 356 (517)
T PRK15317 285 NLQRASKL-EPAAGLIEVELANGAVLKAKTVILATGARWRNMNVP-GEDEYRNKGVAYCPH------CDGPLFKGKRVAV 356 (517)
T ss_pred cCCEEEEE-EecCCeEEEEECCCCEEEcCEEEECCCCCcCCCCCC-CHHHhcCceEEEeec------cCchhcCCCEEEE
Confidence 99889888 443 4567777788999999999999999999888 753 2222211 1122335899999
Q ss_pred ECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHh-cCcEEEccceEEEEEecCCCceEEEECC--
Q psy2951 740 IGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFES-KGVKFVMKANVSSFEKNEKNDVTAANLD-- 816 (1466)
Q Consensus 740 vG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~-~gv~~~~~~~v~~i~~~~~~~~~~v~~~-- 816 (1466)
||+|++|+|+|..|+..+++|+++.+.+.+.. ...+.+.+.+ .||++++++.++++.. +++++..+.+.
T Consensus 357 VGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~-------~~~l~~~l~~~~gI~i~~~~~v~~i~~-~~g~v~~v~~~~~ 428 (517)
T PRK15317 357 IGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA-------DQVLQDKLRSLPNVTIITNAQTTEVTG-DGDKVTGLTYKDR 428 (517)
T ss_pred ECCCHHHHHHHHHHHhcCCEEEEEEECccccc-------cHHHHHHHhcCCCcEEEECcEEEEEEc-CCCcEEEEEEEEC
Confidence 99999999999999999999999999875431 2345555665 6999999999999983 34555555543
Q ss_pred -CC--cEEecCEEEEccccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHH
Q psy2951 817 -NG--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQ 893 (1466)
Q Consensus 817 -~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~ 893 (1466)
++ +++++|.+++++|++|++++++.. +.++++|+|.+|+++||+.|+|||+|||+..+... ...|+
T Consensus 429 ~~g~~~~i~~D~v~~~~G~~p~~~~l~~~-v~~~~~g~i~vd~~l~Ts~p~IyAaGDv~~~~~k~----------~~~A~ 497 (517)
T PRK15317 429 TTGEEHHLELEGVFVQIGLVPNTEWLKGT-VELNRRGEIIVDARGATSVPGVFAAGDCTTVPYKQ----------IIIAM 497 (517)
T ss_pred CCCcEEEEEcCEEEEeECCccCchHHhhh-eeeCCCCcEEECcCCCCCCCCEEECccccCCCCCE----------EEEhh
Confidence 23 369999999999999999998876 88888899999999999999999999999865432 24799
Q ss_pred HHHHHHHHHhcc
Q psy2951 894 YHGRIAALNMVE 905 (1466)
Q Consensus 894 ~~g~~aA~~i~~ 905 (1466)
.+|..||.+++.
T Consensus 498 ~eG~~Aa~~~~~ 509 (517)
T PRK15317 498 GEGAKAALSAFD 509 (517)
T ss_pred hhHHHHHHHHHH
Confidence 999999988864
|
|
| >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-29 Score=324.12 Aligned_cols=336 Identities=23% Similarity=0.284 Sum_probs=233.1
Q ss_pred eEECCCCeeecC--CCCCCCCeEEEEEEcC-eEEEEEcccchhcccccc---ccccccCCCCCCeEEEEcCchHHHHHHH
Q psy2951 539 CFNIATGDIEDF--PGMDSLPCYKVTIQND-DSVVVQARKDELKNKKRK---LPMAKLSSGNKDTFIVVGGGPSGATCVE 612 (1466)
Q Consensus 539 ~f~~~~G~~~~~--p~~~~l~~~~v~i~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~vvVIGgG~AGl~aA~ 612 (1466)
-|..-.|++|.. ||... |.... .+ ..+.+...++...+.... ...+.+.+.+.++|+|||||||||+||.
T Consensus 373 p~p~~~grvC~~~~~Ce~~--c~~~~--~~~~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~~~V~IIGaGpAGl~aA~ 448 (752)
T PRK12778 373 ALPAVCGRVCPQEKQCESK--CIHGK--MGEEAVAIGYLERFVADYERESGNISVPEVAEKNGKKVAVIGSGPAGLSFAG 448 (752)
T ss_pred CchhHhcCcCCCcCchHHh--cccCC--CCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCCCCCCEEEEECcCHHHHHHHH
Confidence 344456887764 67643 22221 23 455555555555543211 1122223456789999999999999999
Q ss_pred HHHHcCCCccEEEEcCCCCCCCCCCccchhcccCcccccccCHhHhhhCCcEEEEceEEEEeccccccEEEccCCCEEec
Q psy2951 613 TLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDF 692 (1466)
Q Consensus 613 ~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~ 692 (1466)
.|+++|++ |+++++.+.+++.. .........+.++..+..+++++.|++++.++.+. +.+++++.....|
T Consensus 449 ~l~~~G~~--V~v~e~~~~~GG~l-~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~-------~~v~~~~l~~~~y 518 (752)
T PRK12778 449 DLAKRGYD--VTVFEALHEIGGVL-KYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVG-------KTITIEELEEEGF 518 (752)
T ss_pred HHHHCCCe--EEEEecCCCCCCee-eecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEEC-------CcCCHHHHhhcCC
Confidence 99999998 77888765433211 11100001223455566677888999999988541 2233444445679
Q ss_pred CEEEEcCCC-CCCcCCCCCCCC--cEEEecCHHHHHhhc--------ccCCCCCcEEEECCChHHHHHHHHHhccCCe-E
Q psy2951 693 TKIYLATGS-SPRTISQADGVN--KVFYLRTVEDANNIA--------PHITPESNVVVIGSSFIGMEAAAFCASKVKS-V 760 (1466)
Q Consensus 693 d~lviAtG~-~~~~~~~~~g~~--~~~~~~~~~~~~~~~--------~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~-V 760 (1466)
|+||||||+ .|+.+++| |.+ ++++..++....... .....+++|+|||+|++|+|+|..+.++|.+ |
T Consensus 519 davvlAtGa~~~~~l~ip-G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~V 597 (752)
T PRK12778 519 KGIFIASGAGLPNFMNIP-GENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERV 597 (752)
T ss_pred CEEEEeCCCCCCCCCCCC-CCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeE
Confidence 999999998 59999999 876 566555444332211 1123589999999999999999999999987 9
Q ss_pred EEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECC---------CC-----------cE
Q psy2951 761 TVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLD---------NG-----------TT 820 (1466)
Q Consensus 761 ~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~---------~g-----------~~ 820 (1466)
|++++.+....+....+ .+.++++||+++++..+.++..++++++..+.+. +| .+
T Consensus 598 tlv~r~~~~~~~~~~~e-----~~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~ 672 (752)
T PRK12778 598 TIVYRRSEEEMPARLEE-----VKHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFT 672 (752)
T ss_pred EEeeecCcccCCCCHHH-----HHHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEE
Confidence 99998764322221111 1346788999999999999975455555554431 12 26
Q ss_pred EecCEEEEccccccCccccccC-CceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHH
Q psy2951 821 IPADLVIVGIGTVLNTNYLDGK-GVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIA 899 (1466)
Q Consensus 821 i~~D~vi~a~G~~p~~~~~~~~-gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~a 899 (1466)
+++|.||+|+|++|+..++... +++++++|+|.+|++++|+.|+|||+|||+..+. .+..|+.+|+.|
T Consensus 673 i~~D~Vi~A~G~~p~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~gVfA~GD~~~g~~-----------~vv~Av~~G~~A 741 (752)
T PRK12778 673 VDVDLVIVSVGVSPNPLVPSSIPGLELNRKGTIVVDEEMQSSIPGIYAGGDIVRGGA-----------TVILAMGDGKRA 741 (752)
T ss_pred EECCEEEECcCCCCCccccccccCceECCCCCEEeCCCCCCCCCCEEEeCCccCCcH-----------HHHHHHHHHHHH
Confidence 9999999999999998776654 8889989999999999999999999999987543 346899999999
Q ss_pred HHHhcc
Q psy2951 900 ALNMVE 905 (1466)
Q Consensus 900 A~~i~~ 905 (1466)
|.+|..
T Consensus 742 A~~I~~ 747 (752)
T PRK12778 742 AAAIDE 747 (752)
T ss_pred HHHHHH
Confidence 999864
|
|
| >PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-29 Score=306.22 Aligned_cols=287 Identities=25% Similarity=0.292 Sum_probs=207.0
Q ss_pred cCCCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcccCcccccccCHhHhhhCCcEEEEce
Q psy2951 590 LSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGK 669 (1466)
Q Consensus 590 ~~~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~ 669 (1466)
+++...++|+|||||||||++|..|+++|++ |+++++.+.+++... ..........++..+..+++++.|++++.++
T Consensus 135 ~~~~~~~~VvIIGgGpaGl~aA~~l~~~g~~--V~lie~~~~~gG~l~-~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~ 211 (457)
T PRK11749 135 RAPKTGKKVAVIGAGPAGLTAAHRLARKGYD--VTIFEARDKAGGLLR-YGIPEFRLPKDIVDREVERLLKLGVEIRTNT 211 (457)
T ss_pred CCccCCCcEEEECCCHHHHHHHHHHHhCCCe--EEEEccCCCCCcEee-ccCCCccCCHHHHHHHHHHHHHcCCEEEeCC
Confidence 3445678999999999999999999999987 888888765432111 0000001233555666677888999999998
Q ss_pred EEEEeccccccEEEccCCCEEecCEEEEcCCCC-CCcCCCCCCCC--cEEEecCHHHHHhhc---ccCCCCCcEEEECCC
Q psy2951 670 KIISDSELNEKKIKLQDGTSIDFTKIYLATGSS-PRTISQADGVN--KVFYLRTVEDANNIA---PHITPESNVVVIGSS 743 (1466)
Q Consensus 670 ~v~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~-~~~~~~~~g~~--~~~~~~~~~~~~~~~---~~~~~~~~vvVvG~G 743 (1466)
.+.. .+.+.+. .+.||+||||||+. ++.++++ |.+ +++............ ..+..+++|+|||+|
T Consensus 212 ~v~~-------~v~~~~~-~~~~d~vvlAtGa~~~~~~~i~-G~~~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG 282 (457)
T PRK11749 212 EVGR-------DITLDEL-RAGYDAVFIGTGAGLPRFLGIP-GENLGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGG 282 (457)
T ss_pred EECC-------ccCHHHH-HhhCCEEEEccCCCCCCCCCCC-CccCCCcEEHHHHHHHHhhccccccCCCCCeEEEECCC
Confidence 5421 1222222 36899999999985 7777888 765 444332222222211 122358999999999
Q ss_pred hHHHHHHHHHhccCC-eEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEEC-------
Q psy2951 744 FIGMEAAAFCASKVK-SVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANL------- 815 (1466)
Q Consensus 744 ~~g~e~A~~l~~~g~-~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~------- 815 (1466)
++|+|+|..+.+.|. +|+++++.+...++.. ....+.+++.||+++++..+.++..+ ++.+..+.+
T Consensus 283 ~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~-----~~~~~~~~~~GV~i~~~~~v~~i~~~-~~~~~~v~~~~~~~~~ 356 (457)
T PRK11749 283 NTAMDAARTAKRLGAESVTIVYRRGREEMPAS-----EEEVEHAKEEGVEFEWLAAPVEILGD-EGRVTGVEFVRMELGE 356 (457)
T ss_pred HHHHHHHHHHHHcCCCeEEEeeecCcccCCCC-----HHHHHHHHHCCCEEEecCCcEEEEec-CCceEEEEEEEEEecC
Confidence 999999999999987 8999998764322221 12346678899999999999999843 322222322
Q ss_pred ------------CCCcEEecCEEEEccccccCccccc-cCCceeeCCCcEEeCC-CCCCCCCCeEEeccccccCCcccCC
Q psy2951 816 ------------DNGTTIPADLVIVGIGTVLNTNYLD-GKGVELNGQKAVVVNE-YLETNVPGVYAGGDIAYAPLHSFYN 881 (1466)
Q Consensus 816 ------------~~g~~i~~D~vi~a~G~~p~~~~~~-~~gl~~~~~G~i~vd~-~~~t~~~~iya~GD~~~~~~~~~~~ 881 (1466)
.+++++++|.||+++|++|+..++. ..++.++++|++.+|+ +++|+.|+|||+|||+..+.
T Consensus 357 ~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~~~----- 431 (457)
T PRK11749 357 PDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDETGRTSLPGVFAGGDIVTGAA----- 431 (457)
T ss_pred cCCCCCcccCCCCceEEEECCEEEECccCCCCchhhccccCccCCCCCCEEeCCCCCccCCCCEEEeCCcCCCch-----
Confidence 1334799999999999999987764 5678888899999998 89999999999999985432
Q ss_pred ceeeeccHHHHHHHHHHHHHHhcc
Q psy2951 882 KNASIGHYQLAQYHGRIAALNMVE 905 (1466)
Q Consensus 882 ~~~~~~~~~~A~~~g~~aA~~i~~ 905 (1466)
.+..|+.||+.||.+|..
T Consensus 432 ------~~~~A~~~G~~aA~~I~~ 449 (457)
T PRK11749 432 ------TVVWAVGDGKDAAEAIHE 449 (457)
T ss_pred ------HHHHHHHHHHHHHHHHHH
Confidence 347899999999999864
|
|
| >KOG4716|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.2e-29 Score=257.10 Aligned_cols=390 Identities=22% Similarity=0.295 Sum_probs=261.0
Q ss_pred cccccCCCCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCC--CCC-------Cccchh-------------
Q psy2951 33 LPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP--YDR-------VKLSKQ------------- 90 (1466)
Q Consensus 33 ~~~~~~~~~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~--~~~-------~~~~~~------------- 90 (1466)
.++.+...+..+|++|||||-+||+||.++++.|.+|.++..-...... +.. ....+.
T Consensus 9 ~~l~~~~~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~ 88 (503)
T KOG4716|consen 9 LPLARLFSSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALH 88 (503)
T ss_pred cchhhhcccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHH
Confidence 3444556667899999999999999999999999999888754432111 000 000000
Q ss_pred ----cccCccc--ccccChh------------------hhhcCCeEEEeCceEEEeccccccEEEe--cCC--cEEecCE
Q psy2951 91 ----LDIKADS--ILLRTEE------------------FYKDNDIHVIKGKKIISDSELNEKKIKL--QDG--TSIDFTK 142 (1466)
Q Consensus 91 ----~~~~~~~--~~~~~~~------------------~~~~~~v~~~~~~~v~~~~~~~~~~v~~--~~~--~~~~~d~ 142 (1466)
++...++ +...... .+++..+.++.....+. +..++.. ..+ +.+++++
T Consensus 89 da~kyGW~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv----~~h~I~at~~~gk~~~~ta~~ 164 (503)
T KOG4716|consen 89 DARKYGWNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFV----DPHKIKATNKKGKERFLTAEN 164 (503)
T ss_pred HHHhhCCCCccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeec----ccceEEEecCCCceEEeecce
Confidence 0111111 1111111 11222333333332222 1233333 233 3589999
Q ss_pred EEEccCCCCCCCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCccccccc
Q psy2951 143 IYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESL 222 (1466)
Q Consensus 143 lviAtG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~ 222 (1466)
++||||.+|+.| .+|+... +.-+.+|...+.. .|+ +.+|||+|++++|+|..|+.+|.+||+..|+- +.+.|
T Consensus 165 fvIatG~RPrYp-~IpG~~E--y~ITSDDlFsl~~--~PG-kTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI--~LrGF 236 (503)
T KOG4716|consen 165 FVIATGLRPRYP-DIPGAKE--YGITSDDLFSLPY--EPG-KTLVVGAGYVALECAGFLKGFGYDVTVMVRSI--LLRGF 236 (503)
T ss_pred EEEEecCCCCCC-CCCCcee--eeecccccccccC--CCC-ceEEEccceeeeehhhhHhhcCCCcEEEEEEe--ecccc
Confidence 999999999965 4665432 2224566555542 355 67899999999999999999999999999974 34789
Q ss_pred CHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCCeEEE--EcCCC--cEEeccEEEEeeccccCccc--cccCCceecC
Q psy2951 223 GKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAA--NLDNG--TTIPADLVIVGIGTVLNTNY--LDGKGVELNG 296 (1466)
Q Consensus 223 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~v--~~~~g--~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~ 296 (1466)
+.++.+.+.+.|+++||++...+.+..++..++++.... .+..+ .+-++|.|+||+|+.+.+.- |+..|++.|+
T Consensus 237 Dqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ 316 (503)
T KOG4716|consen 237 DQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNE 316 (503)
T ss_pred cHHHHHHHHHHHHHhCCceeecccceeeeeccCCcEEEEeecccccccccchhhhhhhhhccccchhhcCCCccceeecc
Confidence 999999999999999999999888888887666653322 22222 34579999999999998763 5778888865
Q ss_pred C-ccEEECCCCCcCCCCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCC---CCCCCCCc--cccccc-
Q psy2951 297 Q-KAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK---TSLSTIPF--FWTMLF- 369 (1466)
Q Consensus 297 ~-g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~---~~~~~~p~--~~s~~~- 369 (1466)
+ |.|.+|+.-+|++|+|||+||+... +++....|++.|+..|+.+.+.. .+|..+|- |-|-.+
T Consensus 317 ks~KI~v~~~e~t~vp~vyAvGDIl~~----------kpELTPvAIqsGrlLa~Rlf~gs~q~~dy~~V~TTVFTPLEy~ 386 (503)
T KOG4716|consen 317 KSGKIPVDDEEATNVPYVYAVGDILED----------KPELTPVAIQSGRLLARRLFAGSTQLMDYDDVATTVFTPLEYG 386 (503)
T ss_pred cCCccccChHHhcCCCceEEecceecC----------CcccchhhhhhchHHHHHHhcCcceeeeccCCceeeecchhcc
Confidence 4 7999999999999999999999753 35666789999999999988643 35666663 222221
Q ss_pred ceeeEEEE--eecCCc------------eEEEecccCCCeEEEEEEc---CCEEEEEEEECC--CHHHHHHHHHHhcCCC
Q psy2951 370 GVGFRFAG--YAAGHT------------QVDIVGDLEALKFTAYYSN---ADKVLAILTVGM--DPLAAQFAEQVLEFPY 430 (1466)
Q Consensus 370 ~~~~~~~G--~~~~~~------------~~~~~g~~~~~~~~~~~~~---~~~i~g~~~~~~--~~~~~~~~~~~i~~~~ 430 (1466)
.+|+..-- ...+.+ ++..-.......+.+.++. +.+|+|++.+|. .++++.++ .++..+.
T Consensus 387 c~GlsEE~Ai~k~g~dnievfH~~f~P~E~~ipqrd~~~CY~K~vc~r~~~qkv~G~H~lgPnAgEV~QGfa-aAlk~gl 465 (503)
T KOG4716|consen 387 CVGLSEEDAIEKYGEDNIEVFHSYFKPLEYTIPQRDVRHCYLKAVCERDEDQKVLGLHILGPNAGEVIQGFA-AALKCGL 465 (503)
T ss_pred ccCCCHHHHHHHhCcccEEEeeccccceEEEcccccCCceEEEEeecccCCceEEEEEEecCchhHHHHHHH-HHHHhcc
Confidence 22220000 000111 1122222234556666655 479999999999 67888888 7888887
Q ss_pred cc-----ccccCcccchhhc
Q psy2951 431 SS-----LPHSHRCLGVVLG 445 (1466)
Q Consensus 431 ~~-----~~~~~p~~~e~~~ 445 (1466)
+. ++.+||+.+|.|.
T Consensus 466 t~~~l~ntigIHPt~aE~Ft 485 (503)
T KOG4716|consen 466 TKKDLDNTIGIHPTTAEEFT 485 (503)
T ss_pred cHHHHhhcccccccchhhee
Confidence 75 8999999999983
|
|
| >TIGR01292 TRX_reduct thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-28 Score=284.76 Aligned_cols=275 Identities=24% Similarity=0.353 Sum_probs=209.6
Q ss_pred CcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCC---------CCCCchhhccCcccccccChhhhccCCcEEE
Q psy2951 1067 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD---------RVKLSKQLDIKADSILLRTEEFYKDNDIHVI 1137 (1466)
Q Consensus 1067 ~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~---------~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1137 (1466)
++|+|||||+||++||..|++.|. +|+|||+++. +.. .|.+... .....+.....+++++++++++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~--~v~lie~~~~-gg~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~gv~~~ 75 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANL--KTLIIEGMEP-GGQLTTTTEVENYPGFPEG--ISGPELMEKMKEQAVKFGAEII 75 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCC--CEEEEeccCC-CcceeecccccccCCCCCC--CChHHHHHHHHHHHHHcCCeEE
Confidence 479999999999999999999998 8999998762 110 0111100 0112222333456677899998
Q ss_pred cCCeEEEeecCCCC--eEEecCCcEEecCeEEEecCCCCCcCCCCCCCC-----cEEEecCHHHHHhhhcccCCCCeEEE
Q psy2951 1138 KGKKIISDSELNEK--KIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-----KVFYLRTVEDANNIAPHITPESNVVV 1210 (1466)
Q Consensus 1138 ~~~~v~~i~d~~~~--~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~-----~v~~~~~~~~~~~l~~~~~~~~~vvV 1210 (1466)
. ++|+.+ ++..+ .|.+.++..+.||+||+|||+.|+.+++| |.+ ++++....+. ....+++|+|
T Consensus 76 ~-~~v~~v-~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~i~-g~~~~~~~~~~~~~~~~~------~~~~~~~v~V 146 (300)
T TIGR01292 76 Y-EEVIKV-DLSDRPFKVKTGDGKEYTAKAVIIATGASARKLGIP-GEDEFLGRGVSYCATCDG------PFFKNKEVAV 146 (300)
T ss_pred E-EEEEEE-EecCCeeEEEeCCCCEEEeCEEEECCCCCcccCCCC-ChhhcCCccEEEeeecCh------hhcCCCEEEE
Confidence 8 679999 87665 56667778999999999999999988888 754 3433322221 1224789999
Q ss_pred EcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhC-CcEEEcCceEEEEEecCCCcEEEEEcC--
Q psy2951 1211 IGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESK-GVKFVMKANVSSFEKNEKNDVTAANLD-- 1287 (1466)
Q Consensus 1211 vG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~-gv~~~~~~~v~~i~~~~~g~~~~v~l~-- 1287 (1466)
||+|.+|+|+|..|++.+.+|+++.+.+... ....+.+.++++ ||++++++.+++++ .+ +++..+++.
T Consensus 147 iG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~-------~~~~~~~~l~~~~gv~~~~~~~v~~i~-~~-~~~~~v~~~~~ 217 (300)
T TIGR01292 147 VGGGDSAIEEALYLTRIAKKVTLVHRRDKFR-------AEKILLDRLRKNPNIEFLWNSTVKEIV-GD-NKVEGVKIKNT 217 (300)
T ss_pred ECCChHHHHHHHHHHhhcCEEEEEEeCcccC-------cCHHHHHHHHhCCCeEEEeccEEEEEE-cc-CcEEEEEEEec
Confidence 9999999999999999999999999986432 123455666777 99999999999998 33 355455542
Q ss_pred -CC--CeeecCEEEEeeccccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHH
Q psy2951 1288 -NG--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQ 1364 (1466)
Q Consensus 1288 -~g--~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~ 1364 (1466)
+| .++++|.|++++|..|+.++++.. +.++.+|++.||++++|++|+||++|||+..+. .+|..|.
T Consensus 218 ~~g~~~~i~~D~vi~a~G~~~~~~~l~~~-~~~~~~g~i~v~~~~~t~~~~vya~GD~~~~~~----------~~~~~A~ 286 (300)
T TIGR01292 218 VTGEEEELKVDGVFIAIGHEPNTELLKGL-LELDEGGYIVTDEGMRTSVPGVFAAGDVRDKGY----------RQAVTAA 286 (300)
T ss_pred CCCceEEEEccEEEEeeCCCCChHHHHHh-heecCCCcEEECCCCccCCCCEEEeecccCcch----------hhhhhhh
Confidence 23 579999999999999999988877 777888999999999999999999999997421 2347899
Q ss_pred HHHHHHHHHhc
Q psy2951 1365 YHGRIAALNMV 1375 (1466)
Q Consensus 1365 ~qa~~aa~~i~ 1375 (1466)
.||+.||.+|.
T Consensus 287 ~~g~~aa~~i~ 297 (300)
T TIGR01292 287 GDGCIAALSAE 297 (300)
T ss_pred hhHHHHHHHHH
Confidence 99999999986
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). |
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=302.86 Aligned_cols=284 Identities=25% Similarity=0.357 Sum_probs=215.5
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCC-CCCCCCCCchhhc---cCcccccccChhhhccCCcEEEcC
Q psy2951 1064 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENF-LPYDRVKLSKQLD---IKADSILLRTEEFYKDNDIHVIKG 1139 (1466)
Q Consensus 1064 ~~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~-~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~ 1139 (1466)
...++|+|||||+||++||..|++.|. +++||++... .+.....+..... ....++.....+++++++++++.+
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~--~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~ 287 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGL--RTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMEN 287 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCC--cEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcC
Confidence 346899999999999999999999999 9999975311 1111111111110 112222223345566779999999
Q ss_pred CeEEEeecCCC--CeEEecCCcEEecCeEEEecCCCCCcCCCCCCCC-----cEEEecCHHHHHhhhcccCCCCeEEEEc
Q psy2951 1140 KKIISDSELNE--KKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-----KVFYLRTVEDANNIAPHITPESNVVVIG 1212 (1466)
Q Consensus 1140 ~~v~~i~d~~~--~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~-----~v~~~~~~~~~~~l~~~~~~~~~vvVvG 1212 (1466)
++|..+ +... ..+.+.+|..+.||+||+|||+.|+.+++| |.+ ++++....+. .+..+++|+|||
T Consensus 288 ~~V~~I-~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~~~ip-G~~~~~~~~v~~~~~~~~------~~~~~k~VvViG 359 (515)
T TIGR03140 288 QRAKKI-ETEDGLIVVTLESGEVLKAKSVIVATGARWRKLGVP-GEKEYIGKGVAYCPHCDG------PFFKGKDVAVIG 359 (515)
T ss_pred CEEEEE-EecCCeEEEEECCCCEEEeCEEEECCCCCcCCCCCC-CHHHcCCCeEEEeeccCh------hhcCCCEEEEEC
Confidence 999999 7654 456777888999999999999999988888 753 3444332221 223489999999
Q ss_pred CCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHh-CCcEEEcCceEEEEEecCCCcEEEEEcCCC--
Q psy2951 1213 SSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFES-KGVKFVMKANVSSFEKNEKNDVTAANLDNG-- 1289 (1466)
Q Consensus 1213 ~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~-~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g-- 1289 (1466)
+|++|+|+|..|++.+.+|+++++.+.+.. ...+.+.+++ +||++++++.++++. ++++++..|.+.++
T Consensus 360 gG~~g~E~A~~L~~~g~~Vtli~~~~~l~~-------~~~l~~~l~~~~gV~i~~~~~v~~i~-~~~~~v~~v~~~~~~~ 431 (515)
T TIGR03140 360 GGNSGIEAAIDLAGIVRHVTVLEFADELKA-------DKVLQDKLKSLPNVDILTSAQTTEIV-GDGDKVTGIRYQDRNS 431 (515)
T ss_pred CcHHHHHHHHHHHhcCcEEEEEEeCCcCCh-------hHHHHHHHhcCCCCEEEECCeeEEEE-cCCCEEEEEEEEECCC
Confidence 999999999999999999999998775432 2345566665 699999999999998 45456666776542
Q ss_pred ---CeeecCEEEEeeccccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHH
Q psy2951 1290 ---TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYH 1366 (1466)
Q Consensus 1290 ---~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~q 1366 (1466)
+++++|.|++++|..|++++++.. +.++.+|+|.||++++|++|+|||+|||+..|... +..|+.|
T Consensus 432 ~~~~~i~~D~vi~a~G~~Pn~~~l~~~-~~~~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~~~----------~~~A~~~ 500 (515)
T TIGR03140 432 GEEKQLDLDGVFVQIGLVPNTEWLKDA-VELNRRGEIVIDERGRTSVPGIFAAGDVTTVPYKQ----------IIIAMGE 500 (515)
T ss_pred CcEEEEEcCEEEEEeCCcCCchHHhhh-cccCCCCeEEECCCCCCCCCCEEEcccccCCccce----------EEEEEcc
Confidence 468999999999999999999876 77887899999999999999999999999876532 1468999
Q ss_pred HHHHHHHhcC
Q psy2951 1367 GRIAALNMVE 1376 (1466)
Q Consensus 1367 a~~aa~~i~g 1376 (1466)
|..||.++.+
T Consensus 501 G~~Aa~~i~~ 510 (515)
T TIGR03140 501 GAKAALSAFD 510 (515)
T ss_pred HHHHHHHHHH
Confidence 9999998764
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >PRK10262 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=287.36 Aligned_cols=295 Identities=18% Similarity=0.218 Sum_probs=200.8
Q ss_pred CCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCcc---ch-hcccCcccccccChhhhhcCCeEEEe
Q psy2951 40 SGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKL---SK-QLDIKADSILLRTEEFYKDNDIHVIK 115 (1466)
Q Consensus 40 ~~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (1466)
+...+||+|||||||||+||..|+++|+++.+++.............. .. ........+..++.+....+++++..
T Consensus 3 ~~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (321)
T PRK10262 3 TTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIF 82 (321)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEe
Confidence 356789999999999999999999999998887643221100000000 00 00122233445556666667777766
Q ss_pred CceEEEeccccccEEEecCCcEEecCEEEEccCCCCCCCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHH
Q psy2951 116 GKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGM 195 (1466)
Q Consensus 116 ~~~v~~~~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~ 195 (1466)
+...........+++..+ ...+.||+||+|||+.|+.++ +++.+. +..+.+..+..+......+++++|||+|++|+
T Consensus 83 ~~v~~v~~~~~~~~v~~~-~~~~~~d~vilAtG~~~~~~~-i~g~~~-~~~~~v~~~~~~~~~~~~g~~vvVvGgG~~g~ 159 (321)
T PRK10262 83 DHINKVDLQNRPFRLTGD-SGEYTCDALIIATGASARYLG-LPSEEA-FKGRGVSACATCDGFFYRNQKVAVIGGGNTAV 159 (321)
T ss_pred eEEEEEEecCCeEEEEec-CCEEEECEEEECCCCCCCCCC-CCCHHH-cCCCcEEEeecCCHHHcCCCEEEEECCCHHHH
Confidence 543222222222334332 347899999999999997553 554321 11111111222222234678999999999999
Q ss_pred HHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCCeEEEEcCC------CcEE
Q psy2951 196 EAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDN------GTTI 269 (1466)
Q Consensus 196 e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~~~------g~~i 269 (1466)
|+|..|++.+++|+++++.+... .++.+.+.+.+.|++.||++++++.+++++.++ ..+..+.+.+ .+++
T Consensus 160 e~A~~l~~~~~~Vtlv~~~~~~~---~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~-~~~~~v~~~~~~~~~~~~~i 235 (321)
T PRK10262 160 EEALYLSNIASEVHLIHRRDGFR---AEKILIKRLMDKVENGNIILHTNRTLEEVTGDQ-MGVTGVRLRDTQNSDNIESL 235 (321)
T ss_pred HHHHHHHhhCCEEEEEEECCccC---CCHHHHHHHHhhccCCCeEEEeCCEEEEEEcCC-ccEEEEEEEEcCCCCeEEEE
Confidence 99999999999999999976432 246677888889999999999999999998653 2344444332 2479
Q ss_pred eccEEEEeeccccCccccccCCceecCCccEEECC-----CCCcCCCCEEEecccccccCccCCCCcceeccHHHHHHHH
Q psy2951 270 PADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNE-----YLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHG 344 (1466)
Q Consensus 270 ~~D~Vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~-----~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g 344 (1466)
++|.||+++|++||..++.. ++.++ +|+|.||+ +++|++|+|||+|||++.+. .++..|+.+|
T Consensus 236 ~~D~vv~a~G~~p~~~l~~~-~l~~~-~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~~----------~~~~~A~~~g 303 (321)
T PRK10262 236 DVAGLFVAIGHSPNTAIFEG-QLELE-NGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIY----------RQAITSAGTG 303 (321)
T ss_pred ECCEEEEEeCCccChhHhhc-ccccc-CCEEEECCCCcccccccCCCCEEECeeccCCCc----------ceEEEEehhH
Confidence 99999999999999997754 46654 58999997 68999999999999986432 2233488899
Q ss_pred HHHHHHhcC
Q psy2951 345 RIAALNMVE 353 (1466)
Q Consensus 345 ~~aa~~i~~ 353 (1466)
..||..+..
T Consensus 304 ~~Aa~~~~~ 312 (321)
T PRK10262 304 CMAALDAER 312 (321)
T ss_pred HHHHHHHHH
Confidence 998888764
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=5e-29 Score=303.34 Aligned_cols=338 Identities=20% Similarity=0.225 Sum_probs=229.7
Q ss_pred EECCCCeeecCCCCCCCCeEEEEEEcCeEEEEEcccchhccccccccc---cccCCCCCCeEEEEcCchHHHHHHHHHHH
Q psy2951 540 FNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQARKDELKNKKRKLPM---AKLSSGNKDTFIVVGGGPSGATCVETLRQ 616 (1466)
Q Consensus 540 f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~vvVIGgG~AGl~aA~~l~~ 616 (1466)
|..-.|++|..||...+..-. .++.+-+...++.+.+......+ ..+.....++|+||||||||++||..|++
T Consensus 89 ~~~~~g~vC~~~Ce~~C~~~~----~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~VvIIGaGpAGl~aA~~l~~ 164 (471)
T PRK12810 89 FPEFTGRVCPAPCEGACTLNI----NFGPVTIKNIERYIIDKAFEEGWVKPDPPVKRTGKKVAVVGSGPAGLAAADQLAR 164 (471)
T ss_pred hhHHhcCcCCchhHHhccCCC----CCCCccHHHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECcCHHHHHHHHHHHh
Confidence 444568888888876422221 24566666666666654322211 12334457899999999999999999999
Q ss_pred cCCCccEEEEcCCCCCCCCCCccchhcccCcccccccCHhHhhhCCcEEEEceEEEEeccccccEEEccCCCEEecCEEE
Q psy2951 617 NGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIY 696 (1466)
Q Consensus 617 ~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~d~lv 696 (1466)
+|++ |+++++.+.+++... ..........++.....+++.+.|++++.++.+. . +... +.....||+||
T Consensus 165 ~G~~--V~vie~~~~~GG~l~-~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~-~-~~~~------~~~~~~~d~vv 233 (471)
T PRK12810 165 AGHK--VTVFERADRIGGLLR-YGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVG-K-DITA------EELLAEYDAVF 233 (471)
T ss_pred CCCc--EEEEecCCCCCceee-ecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEEC-C-cCCH------HHHHhhCCEEE
Confidence 9988 888888765432111 1000001223344555667888999999999552 2 1111 11135799999
Q ss_pred EcCCCC-CCcCCCCCCCC--cEEEecCHHHHH--hhc------ccCCCCCcEEEECCChHHHHHHHHHhccCC-eEEEEe
Q psy2951 697 LATGSS-PRTISQADGVN--KVFYLRTVEDAN--NIA------PHITPESNVVVIGSSFIGMEAAAFCASKVK-SVTVVG 764 (1466)
Q Consensus 697 iAtG~~-~~~~~~~~g~~--~~~~~~~~~~~~--~~~------~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~-~V~lv~ 764 (1466)
+|||+. ++.++++ |.+ ++++..++.... .+. .....+++|+|||+|++|+|+|..+.++|. +|+++.
T Consensus 234 lAtGa~~~~~l~ip-G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~ 312 (471)
T PRK12810 234 LGTGAYKPRDLGIP-GRDLDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRD 312 (471)
T ss_pred EecCCCCCCcCCCC-CccCCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEcc
Confidence 999997 7788888 765 555432221110 011 112358999999999999999998888874 799776
Q ss_pred ecCccCccccCH----HH-HHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEEC-----CCC---------cEEecCE
Q psy2951 765 RGAVPFQESLGK----EV-GERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANL-----DNG---------TTIPADL 825 (1466)
Q Consensus 765 ~~~~~~~~~~~~----~~-~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~-----~~g---------~~i~~D~ 825 (1466)
+.+.+.....+. .. .....+.+++.||+++++..+++|. ++++++..+++ .+| +++++|.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~-~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~ 391 (471)
T PRK12810 313 IMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFE-GENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADL 391 (471)
T ss_pred ccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEE-ccCCEEEEEEEEEEEecCCCccccCCceEEEECCE
Confidence 655433211110 00 1113456778899999999999997 34556654432 222 4799999
Q ss_pred EEEccccccCc-cccccCCceeeCCCcEEeC-CCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHh
Q psy2951 826 VIVGIGTVLNT-NYLDGKGVELNGQKAVVVN-EYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNM 903 (1466)
Q Consensus 826 vi~a~G~~p~~-~~~~~~gl~~~~~G~i~vd-~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i 903 (1466)
||+|+|++|+. .+++..+++++++|++.+| ++++|+.|+|||+|||+..+. .+..|+.||+.||.+|
T Consensus 392 VI~A~G~~p~~~~l~~~~gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD~~~g~~-----------~~~~Av~~G~~AA~~i 460 (471)
T PRK12810 392 VLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNAYQTSNPKVFAAGDMRRGQS-----------LVVWAIAEGRQAARAI 460 (471)
T ss_pred EEECcCcCCCchhhccccCcccCCCCCEEeCCCcccCCCCCEEEccccCCCch-----------hHHHHHHHHHHHHHHH
Confidence 99999999985 5888889999989999998 799999999999999987543 2468999999999998
Q ss_pred cc
Q psy2951 904 VE 905 (1466)
Q Consensus 904 ~~ 905 (1466)
..
T Consensus 461 ~~ 462 (471)
T PRK12810 461 DA 462 (471)
T ss_pred HH
Confidence 64
|
|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-28 Score=306.91 Aligned_cols=333 Identities=20% Similarity=0.216 Sum_probs=222.3
Q ss_pred EECCCCeeecCCCCCCCCeEEEEEEcCeEEEEEcccchhccccc---cccccccCCCCCCeEEEEcCchHHHHHHHHHHH
Q psy2951 540 FNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQARKDELKNKKR---KLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQ 616 (1466)
Q Consensus 540 f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~vvVIGgG~AGl~aA~~l~~ 616 (1466)
|..-.|+++..||...+. ... .++.+.+...++...+... +...+.+.+...++|+|||||||||+||+.|++
T Consensus 139 ~p~~~grvC~~~Ce~~C~--r~~--~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~k~VaIIGaGpAGl~aA~~La~ 214 (652)
T PRK12814 139 LPGILGRICPAPCEEACR--RHG--VDEPVSICALKRYAADRDMESAERYIPERAPKSGKKVAIIGAGPAGLTAAYYLLR 214 (652)
T ss_pred ccceeeCCcCchhhHHHc--CCC--CCCCcchhHHHHHHHHHHHhcCcccCCCCCCCCCCEEEEECCCHHHHHHHHHHHH
Confidence 444457777777764211 111 1233333444444443321 111222334567899999999999999999999
Q ss_pred cCCCccEEEEcCCCCCCCCCCccchhcccCcccccccCHhHhhhCCcEEEEceEEEEeccccccEEEccCCCEEecCEEE
Q psy2951 617 NGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIY 696 (1466)
Q Consensus 617 ~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~d~lv 696 (1466)
.|++ |++++++..+++... ........+.++..+..+.+.+.|+++++++.+ .. + +++.+. ...||+||
T Consensus 215 ~G~~--Vtv~e~~~~~GG~l~-~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v-~~-d-----v~~~~~-~~~~DaVi 283 (652)
T PRK12814 215 KGHD--VTIFDANEQAGGMMR-YGIPRFRLPESVIDADIAPLRAMGAEFRFNTVF-GR-D-----ITLEEL-QKEFDAVL 283 (652)
T ss_pred CCCc--EEEEecCCCCCceee-ecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcc-cC-c-----cCHHHH-HhhcCEEE
Confidence 9998 778887765432211 100000123344555566778889999999843 22 1 112111 23599999
Q ss_pred EcCCCCC-CcCCCCCCCC--cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCC-eEEEEeecCccCcc
Q psy2951 697 LATGSSP-RTISQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVK-SVTVVGRGAVPFQE 772 (1466)
Q Consensus 697 iAtG~~~-~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~-~V~lv~~~~~~~~~ 772 (1466)
||||+.+ ..+++| |.+ +++...++............+++|+|||+|++|+|+|..+.+.|. +|+++++.+...++
T Consensus 284 lAtGa~~~~~~~ip-G~~~~gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mp 362 (652)
T PRK12814 284 LAVGAQKASKMGIP-GEELPGVISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMP 362 (652)
T ss_pred EEcCCCCCCCCCCC-CcCcCCcEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCC
Confidence 9999875 567788 765 444332222221122234568999999999999999999999985 69999998753333
Q ss_pred ccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCce--EEEECC---------------CCc--EEecCEEEEccccc
Q psy2951 773 SLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDV--TAANLD---------------NGT--TIPADLVIVGIGTV 833 (1466)
Q Consensus 773 ~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~--~~v~~~---------------~g~--~i~~D~vi~a~G~~ 833 (1466)
..+.+ +.+. .+.||+|+++..+.++... ++.+ ..+.+. +|+ ++++|.||+|+|+.
T Consensus 363 a~~~e----i~~a-~~eGV~i~~~~~~~~i~~~-~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~ 436 (652)
T PRK12814 363 ANRAE----IEEA-LAEGVSLRELAAPVSIERS-EGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQ 436 (652)
T ss_pred CCHHH----HHHH-HHcCCcEEeccCcEEEEec-CCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCc
Confidence 33333 2333 3679999999999998743 2222 222111 122 68999999999999
Q ss_pred cCccccccCCceeeCCCcEEeCC-CCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhcc
Q psy2951 834 LNTNYLDGKGVELNGQKAVVVNE-YLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVE 905 (1466)
Q Consensus 834 p~~~~~~~~gl~~~~~G~i~vd~-~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~ 905 (1466)
|++++++..|++++.+|++.+|+ +++|+.|+|||+||++..+. .+..|+.||+.||.+|..
T Consensus 437 p~~~ll~~~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~~g~~-----------~v~~Ai~~G~~AA~~I~~ 498 (652)
T PRK12814 437 VDPPIAEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDCVTGAD-----------IAINAVEQGKRAAHAIDL 498 (652)
T ss_pred CCcccccccCccccCCCcEeeCCCCCcCCCCCEEEcCCcCCCch-----------HHHHHHHHHHHHHHHHHH
Confidence 99999988899999899999996 68999999999999987654 346899999999999863
|
|
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.6e-28 Score=298.46 Aligned_cols=279 Identities=24% Similarity=0.323 Sum_probs=202.4
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCc---cchhcc---cCcccccccCHhHhhhCCcEEEE
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK---LSKQLD---IKADSILLRTEEFYKDNDIHVIK 667 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~gv~~~~ 667 (1466)
..+||+|||||||||+||..|+++|++ |+++|++.. ++.... ...... ....++..++.+.+++.+++++.
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~--V~liE~~~~-GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~~ 79 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLD--TLIIEKDDF-GGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFLQ 79 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCC--EEEEecCCC-CceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEec
Confidence 358999999999999999999999988 788887642 221111 100011 22334555666677788999874
Q ss_pred ceEEEEeccccc--cEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCC-----cEEEecCHHHHHhhcccCCCCCcEEEE
Q psy2951 668 GKKIISDSELNE--KKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-----KVFYLRTVEDANNIAPHITPESNVVVI 740 (1466)
Q Consensus 668 ~~~v~~i~~~~~--~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~vvVv 740 (1466)
++|..+ +... ..+.+.+ ..+.|++||||||+.|+.|+++ |.+ .+++....+ .....+++|+||
T Consensus 80 -~~V~~i-~~~~~~~~V~~~~-g~~~a~~lVlATGa~p~~~~ip-G~~~~~~~~v~~~~~~~------~~~~~g~~VvVI 149 (555)
T TIGR03143 80 -AEVLDV-DFDGDIKTIKTAR-GDYKTLAVLIATGASPRKLGFP-GEEEFTGRGVAYCATCD------GEFFTGMDVFVI 149 (555)
T ss_pred -cEEEEE-EecCCEEEEEecC-CEEEEeEEEECCCCccCCCCCC-CHHHhCCceEEEEeecC------hhhcCCCEEEEE
Confidence 448777 5443 3455544 4689999999999999999999 754 233322211 123358999999
Q ss_pred CCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEE---CCC
Q psy2951 741 GSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAAN---LDN 817 (1466)
Q Consensus 741 G~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~---~~~ 817 (1466)
|||++|+|+|..|++.|.+|+++++.+.... ... ...+.+..+||++++++.++++.. ++.+..+. ..+
T Consensus 150 GgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~---~~~---~~~~~~~~~gV~i~~~~~V~~i~~--~~~v~~v~~~~~~~ 221 (555)
T TIGR03143 150 GGGFAAAEEAVFLTRYASKVTVIVREPDFTC---AKL---IAEKVKNHPKIEVKFNTELKEATG--DDGLRYAKFVNNVT 221 (555)
T ss_pred CCCHHHHHHHHHHHccCCEEEEEEeCCcccc---CHH---HHHHHHhCCCcEEEeCCEEEEEEc--CCcEEEEEEEECCC
Confidence 9999999999999999999999999875421 222 223334557999999999999983 23333332 345
Q ss_pred CcE----EecCE----EEEccccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccH
Q psy2951 818 GTT----IPADL----VIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHY 889 (1466)
Q Consensus 818 g~~----i~~D~----vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~ 889 (1466)
|+. +++|. |++++|++|++.+++. +++++++|+|.||++++|+.|+|||+|||+.... ..+
T Consensus 222 G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~-~l~l~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~----------~~v 290 (555)
T TIGR03143 222 GEITEYKAPKDAGTFGVFVFVGYAPSSELFKG-VVELDKRGYIPTNEDMETNVPGVYAAGDLRPKEL----------RQV 290 (555)
T ss_pred CCEEEEeccccccceEEEEEeCCCCChhHHhh-hcccCCCCeEEeCCccccCCCCEEEceeccCCCc----------chh
Confidence 653 23676 9999999999998876 5788888999999999999999999999974321 123
Q ss_pred HHHHHHHHHHHHHhc
Q psy2951 890 QLAQYHGRIAALNMV 904 (1466)
Q Consensus 890 ~~A~~~g~~aA~~i~ 904 (1466)
..|+.||+.||.+|.
T Consensus 291 ~~A~~~G~~Aa~~i~ 305 (555)
T TIGR03143 291 VTAVADGAIAATSAE 305 (555)
T ss_pred eeHHhhHHHHHHHHH
Confidence 579999999999985
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=301.12 Aligned_cols=323 Identities=20% Similarity=0.236 Sum_probs=215.2
Q ss_pred Ccceeeecc--CcchhhhhhhhhhhcccCcc---cc-ccCCCCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCC
Q psy2951 5 PCYKVTIQN--DDSVVVQARKDELKNKKRKL---PM-AKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 78 (1466)
Q Consensus 5 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~ 78 (1466)
||...+.+. ++|+.|..++++........ +. .+......++|+|||||||||+||+.|++.|++|+|++..+..
T Consensus 493 ~Ce~~C~R~~~d~pV~I~~Lkr~a~d~~~~~~~~~~~~~~~~~~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~l 572 (1012)
T TIGR03315 493 QCQYKCTRLDYDESVNIREMKKVAAEKGYDEYKTRWHKPQGKSSAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKP 572 (1012)
T ss_pred chHHHhcCCCCCCCCcccHHHHHHHhhHHHhcCccCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccccc
Confidence 454444443 89999999999887642211 11 1122345689999999999999999999999998887654432
Q ss_pred CCCCCCCccchhcccCcccccccChhhhhcCCeEEEeCceEEEeccccccEEEecCCcEEecCEEEEccCCCCCCCCCCC
Q psy2951 79 FLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQAD 158 (1466)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~ 158 (1466)
...... ...... .+.+...+..+++.+.+++++.++... +.+.+.....||+||||||+++..++.++
T Consensus 573 GG~l~~--~IP~~r-lp~e~l~~~ie~l~~~GVe~~~g~~~d---------~~ve~l~~~gYDaVIIATGA~~~~~l~I~ 640 (1012)
T TIGR03315 573 GGVVKN--IIPEFR-ISAESIQKDIELVKFHGVEFKYGCSPD---------LTVAELKNQGYKYVILAIGAWKHGPLRLE 640 (1012)
T ss_pred Cceeee--cccccC-CCHHHHHHHHHHHHhcCcEEEEecccc---------eEhhhhhcccccEEEECCCCCCCCCCCcC
Confidence 111000 000011 112333444566677899998874211 12223334569999999999865444444
Q ss_pred CCCcEEEecCHHHHHhhcc---cCCCCCcEEEECCCHhHHHHHHHHhhC-C-CEEEEEeecCcccccccCHHHHHHHHHH
Q psy2951 159 GVNKVFYLRTVEDANNIAP---HITPESNVVVIGSSFIGMEAAAFCASK-V-KSVTVVGRGAVPFQESLGKEVGERITKL 233 (1466)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~---~~~~~~~vvVvGgG~~g~e~A~~l~~~-g-~~Vtlv~~~~~~~~~~~~~~~~~~l~~~ 233 (1466)
+... ..+..++....+.. ....+++|+|||||++|+|+|..+.+. | .+|+++++......+.... .+.+.
T Consensus 641 G~~~-~v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa~~e----El~~a 715 (1012)
T TIGR03315 641 GGGE-RVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPASRE----ELEEA 715 (1012)
T ss_pred CCCc-ceeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCccccccCHH----HHHHH
Confidence 4321 12223333333321 234689999999999999999988876 7 4899999876422222223 33333
Q ss_pred HHhCCcEEEcCceEEEEEecC-------------CCCeEEEEcCCCcEEeccEEEEeeccccCccccccCCceecCCccE
Q psy2951 234 FESKGVKFVMKANVSSFEKNE-------------KNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAV 300 (1466)
Q Consensus 234 l~~~GV~i~~~~~v~~i~~~~-------------~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~l~~~gl~~~~~g~i 300 (1466)
+ +.||+++++..+.+++... +++...+..++..++++|.||+|+|+.|+.++++..+++++.+|++
T Consensus 716 l-eeGVe~~~~~~p~~I~~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~lle~~GL~ld~~G~I 794 (1012)
T TIGR03315 716 L-EDGVDFKELLSPESFEDGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDLLQKNGIPLDEYGWP 794 (1012)
T ss_pred H-HcCCEEEeCCceEEEECCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChHHHHhcCcccCCCCCE
Confidence 3 4699999988888776210 0111111122224689999999999999999998889999888999
Q ss_pred EECCC-CCcCCCCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCCC
Q psy2951 301 VVNEY-LETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 356 (1466)
Q Consensus 301 ~vd~~-~~t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~ 356 (1466)
.||++ ++|+.|+|||+|||+..| .++..|+.+|+.||.+|++...
T Consensus 795 ~VD~~~~~Ts~pgVFAaGD~a~GP-----------~tVv~AIaqGr~AA~nIl~~~~ 840 (1012)
T TIGR03315 795 VVNQATGETNITNVFVIGDANRGP-----------ATIVEAIADGRKAANAILSREG 840 (1012)
T ss_pred EeCCCCCccCCCCEEEEeCcCCCc-----------cHHHHHHHHHHHHHHHHhcccc
Confidence 99986 899999999999998643 3567899999999999987543
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. |
| >KOG4716|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=248.97 Aligned_cols=362 Identities=22% Similarity=0.288 Sum_probs=241.1
Q ss_pred ccccccCCCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC----------------CCCCCCCc----cch---
Q psy2951 585 LPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN----------------FLPYDRVK----LSK--- 641 (1466)
Q Consensus 585 ~~~~~~~~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~----------------~~~~~~~~----~~~--- 641 (1466)
.++.....+..+|++|||||.+||+||..++..|.++.++.+-+.. ++|-..+. +..
T Consensus 9 ~~l~~~~~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~ 88 (503)
T KOG4716|consen 9 LPLARLFSSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALH 88 (503)
T ss_pred cchhhhcccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHH
Confidence 3444455677899999999999999999999999996555443321 11100000 000
Q ss_pred ---hcccCcc--cccccCH-------hHhhhC--CcEEEEce-EE-------EEeccccccEEEccCC--CEEecCEEEE
Q psy2951 642 ---QLDIKAD--SILLRTE-------EFYKDN--DIHVIKGK-KI-------ISDSELNEKKIKLQDG--TSIDFTKIYL 697 (1466)
Q Consensus 642 ---~~~~~~~--~~~~~~~-------~~~~~~--gv~~~~~~-~v-------~~i~~~~~~~v~~~~~--~~~~~d~lvi 697 (1466)
.++...+ .+...+. ...+.. +.++-+.. +| ..+ ++.....+..++ +.++++.++|
T Consensus 89 da~kyGW~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv-~~h~I~at~~~gk~~~~ta~~fvI 167 (503)
T KOG4716|consen 89 DARKYGWNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFV-DPHKIKATNKKGKERFLTAENFVI 167 (503)
T ss_pred HHHhhCCCCccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeec-ccceEEEecCCCceEEeecceEEE
Confidence 0011111 1211111 111111 22221111 12 222 333333333334 4688999999
Q ss_pred cCCCCCCcCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHH
Q psy2951 698 ATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKE 777 (1466)
Q Consensus 698 AtG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~ 777 (1466)
|||.+|+.|+|| |.. -+.-+.+|...+ ...+.+-+|||+|++++|||..|+..|.+||+..|+- +.+.|+.+
T Consensus 168 atG~RPrYp~Ip-G~~--Ey~ITSDDlFsl---~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI--~LrGFDqd 239 (503)
T KOG4716|consen 168 ATGLRPRYPDIP-GAK--EYGITSDDLFSL---PYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSI--LLRGFDQD 239 (503)
T ss_pred EecCCCCCCCCC-Cce--eeeecccccccc---cCCCCceEEEccceeeeehhhhHhhcCCCcEEEEEEe--ecccccHH
Confidence 999999999999 743 112234443322 3347788999999999999999999999999999984 44789999
Q ss_pred HHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEEC---CCCc--EEecCEEEEccccccCcc--ccccCCceeeC-C
Q psy2951 778 VGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANL---DNGT--TIPADLVIVGIGTVLNTN--YLDGKGVELNG-Q 849 (1466)
Q Consensus 778 ~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~---~~g~--~i~~D~vi~a~G~~p~~~--~~~~~gl~~~~-~ 849 (1466)
+.+.+.+.|+++||+|+....+.+++.-++++. .|.. ..++ +-++|+|+||+|+++.++ -++..|+..|+ .
T Consensus 240 mae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l-~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks 318 (503)
T KOG4716|consen 240 MAELVAEHMEERGIKFLRKTVPERVEQIDDGKL-RVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKS 318 (503)
T ss_pred HHHHHHHHHHHhCCceeecccceeeeeccCCcE-EEEeecccccccccchhhhhhhhhccccchhhcCCCccceeecccC
Confidence 999999999999999999988888886666653 2322 2222 457999999999999876 36888999864 5
Q ss_pred CcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCC---cCcccCeeeeeecCceeE
Q psy2951 850 KAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT---SLSTIPFFWTMLFGVGFR 926 (1466)
Q Consensus 850 G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~---~~~~~~~~~~~~~~~~~~ 926 (1466)
|.|.+|+.-+|+.|+|||+||+..... ++.+.|++.|+..|+.+++... .|..+|..- +..+...
T Consensus 319 ~KI~v~~~e~t~vp~vyAvGDIl~~kp----------ELTPvAIqsGrlLa~Rlf~gs~q~~dy~~V~TTV--FTPLEy~ 386 (503)
T KOG4716|consen 319 GKIPVDDEEATNVPYVYAVGDILEDKP----------ELTPVAIQSGRLLARRLFAGSTQLMDYDDVATTV--FTPLEYG 386 (503)
T ss_pred CccccChHHhcCCCceEEecceecCCc----------ccchhhhhhchHHHHHHhcCcceeeeccCCceee--ecchhcc
Confidence 899999999999999999999976432 3457899999999999997543 466666321 2222333
Q ss_pred EeeccCC-------CC------------ceeEecccccceEEEEEe---cCCeEEEEEeecCch
Q psy2951 927 FAGYAAG-------HT------------QVDIVGDLEALKFTAYYS---NADKVLAILTVGMDP 968 (1466)
Q Consensus 927 ~~g~~~~-------~~------------~~~~~~~~~~~~~~~~~~---~~~~i~g~~~~g~~~ 968 (1466)
..|++++ .+ +..+........|.|.+| ++.+++|.+++|++.
T Consensus 387 c~GlsEE~Ai~k~g~dnievfH~~f~P~E~~ipqrd~~~CY~K~vc~r~~~qkv~G~H~lgPnA 450 (503)
T KOG4716|consen 387 CVGLSEEDAIEKYGEDNIEVFHSYFKPLEYTIPQRDVRHCYLKAVCERDEDQKVLGLHILGPNA 450 (503)
T ss_pred ccCCCHHHHHHHhCcccEEEeeccccceEEEcccccCCceEEEEeecccCCceEEEEEEecCch
Confidence 4454431 01 111222222345788888 689999999999984
|
|
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-27 Score=291.97 Aligned_cols=282 Identities=26% Similarity=0.373 Sum_probs=215.4
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCC---CCCchhh---ccCcccccccChhhhccCCcEEE
Q psy2951 1064 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR---VKLSKQL---DIKADSILLRTEEFYKDNDIHVI 1137 (1466)
Q Consensus 1064 ~~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~---~~l~~~~---~~~~~~~~~~~~~~~~~~~v~~~ 1137 (1466)
...++++|||||+||++||..|++.|. +++||++. ++... ..+.... .....++.....+.+++++++++
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~--~v~li~~~--~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~ 284 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGI--RTGIVAER--FGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIM 284 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCC--cEEEEecC--CCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEE
Confidence 346799999999999999999999998 99999764 11111 0000000 01222333333456677899999
Q ss_pred cCCeEEEeecCC--CCeEEecCCcEEecCeEEEecCCCCCcCCCCCCCC-----cEEEecCHHHHHhhhcccCCCCeEEE
Q psy2951 1138 KGKKIISDSELN--EKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-----KVFYLRTVEDANNIAPHITPESNVVV 1210 (1466)
Q Consensus 1138 ~~~~v~~i~d~~--~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~-----~v~~~~~~~~~~~l~~~~~~~~~vvV 1210 (1466)
.+++|..+ +.. .+.|.+.++..+.||.||+|||++++.+++| |.+ ++++....+. ....+++|+|
T Consensus 285 ~~~~V~~I-~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~~~ip-G~~~~~~~~v~~~~~~~~------~~~~gk~VvV 356 (517)
T PRK15317 285 NLQRASKL-EPAAGLIEVELANGAVLKAKTVILATGARWRNMNVP-GEDEYRNKGVAYCPHCDG------PLFKGKRVAV 356 (517)
T ss_pred cCCEEEEE-EecCCeEEEEECCCCEEEcCEEEECCCCCcCCCCCC-CHHHhcCceEEEeeccCc------hhcCCCEEEE
Confidence 99999999 775 4467778888999999999999999998888 753 4444322221 1235899999
Q ss_pred EcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHh-CCcEEEcCceEEEEEecCCCcEEEEEcCC-
Q psy2951 1211 IGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFES-KGVKFVMKANVSSFEKNEKNDVTAANLDN- 1288 (1466)
Q Consensus 1211 vG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~-~gv~~~~~~~v~~i~~~~~g~~~~v~l~~- 1288 (1466)
||+|++|+|+|..|+..+.+|+++++.+.+.. ...+.+.+.+ .||++++++.++++. .+++++..+.+.+
T Consensus 357 VGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~-------~~~l~~~l~~~~gI~i~~~~~v~~i~-~~~g~v~~v~~~~~ 428 (517)
T PRK15317 357 IGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA-------DQVLQDKLRSLPNVTIITNAQTTEVT-GDGDKVTGLTYKDR 428 (517)
T ss_pred ECCCHHHHHHHHHHHhcCCEEEEEEECccccc-------cHHHHHHHhcCCCcEEEECcEEEEEE-cCCCcEEEEEEEEC
Confidence 99999999999999999999999998875432 1344555554 699999999999998 5556776676643
Q ss_pred --C--CeeecCEEEEeeccccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHH
Q psy2951 1289 --G--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQ 1364 (1466)
Q Consensus 1289 --g--~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~ 1364 (1466)
| +++++|.|++++|..|+++|++.. +.++.+|+|.+|++++|++|+|||+|||+..+... +..|+
T Consensus 429 ~~g~~~~i~~D~v~~~~G~~p~~~~l~~~-v~~~~~g~i~vd~~l~Ts~p~IyAaGDv~~~~~k~----------~~~A~ 497 (517)
T PRK15317 429 TTGEEHHLELEGVFVQIGLVPNTEWLKGT-VELNRRGEIIVDARGATSVPGVFAAGDCTTVPYKQ----------IIIAM 497 (517)
T ss_pred CCCcEEEEEcCEEEEeECCccCchHHhhh-eeeCCCCcEEECcCCCCCCCCEEECccccCCCCCE----------EEEhh
Confidence 3 358999999999999999999876 78888899999999999999999999999876432 15688
Q ss_pred HHHHHHHHHhcC
Q psy2951 1365 YHGRIAALNMVE 1376 (1466)
Q Consensus 1365 ~qa~~aa~~i~g 1376 (1466)
.+|..||.++..
T Consensus 498 ~eG~~Aa~~~~~ 509 (517)
T PRK15317 498 GEGAKAALSAFD 509 (517)
T ss_pred hhHHHHHHHHHH
Confidence 999999988764
|
|
| >PRK12770 putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-27 Score=279.06 Aligned_cols=286 Identities=20% Similarity=0.249 Sum_probs=202.1
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcccCcccccccCHhHhhhCCcEEEEceEEEE
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIIS 673 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~ 673 (1466)
..++|+|||||+||+++|..|++.|++ |+++++.+.+.+............ .+......+.+.+.+++++.++.+..
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~--v~lie~~~~~gg~~~~~~~~~~~~-~~~~~~~~~~l~~~~i~~~~~~~v~~ 93 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYE--VHVYDKLPEPGGLMLFGIPEFRIP-IERVREGVKELEEAGVVFHTRTKVCC 93 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCc--EEEEeCCCCCCceeeecCcccccC-HHHHHHHHHHHHhCCeEEecCcEEee
Confidence 468999999999999999999999987 888888765442211100000011 12223334456667999999987754
Q ss_pred eccc-----cc----cEEEccCCCEEecCEEEEcCCC-CCCcCCCCCCCC--cEEEecCHHHHHhhcc---------c--
Q psy2951 674 DSEL-----NE----KKIKLQDGTSIDFTKIYLATGS-SPRTISQADGVN--KVFYLRTVEDANNIAP---------H-- 730 (1466)
Q Consensus 674 i~~~-----~~----~~v~~~~~~~~~~d~lviAtG~-~~~~~~~~~g~~--~~~~~~~~~~~~~~~~---------~-- 730 (1466)
+ +. .. ..+..+ +..+.||+||||||+ .++.|++| |.+ +++.. .+....+.. .
T Consensus 94 ~-~~~~~~~~~~~~~~~~~~~-~~~~~~d~lviAtGs~~~~~~~ip-g~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~ 168 (352)
T PRK12770 94 G-EPLHEEEGDEFVERIVSLE-ELVKKYDAVLIATGTWKSRKLGIP-GEDLPGVYSA--LEYLFRIRAAKLGYLPWEKVP 168 (352)
T ss_pred c-cccccccccccccccCCHH-HHHhhCCEEEEEeCCCCCCcCCCC-CccccCceeH--HHHHHHhhhcccccccccccc
Confidence 4 21 01 111111 224789999999999 58888888 766 34332 222221111 0
Q ss_pred CCCCCcEEEECCChHHHHHHHHHhccCCe-EEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCc
Q psy2951 731 ITPESNVVVIGSSFIGMEAAAFCASKVKS-VTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKND 809 (1466)
Q Consensus 731 ~~~~~~vvVvG~G~~g~e~A~~l~~~g~~-V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~ 809 (1466)
...+++++|||+|++|+|+|..|.+.|.+ |+++.+.+.... .. .....+.|+++||+++++..+++++. + ++
T Consensus 169 ~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~-~~----~~~~~~~l~~~gi~i~~~~~v~~i~~-~-~~ 241 (352)
T PRK12770 169 PVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEA-PA----GKYEIERLIARGVEFLELVTPVRIIG-E-GR 241 (352)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhC-CC----CHHHHHHHHHcCCEEeeccCceeeec-C-Cc
Confidence 11368999999999999999999988886 999998753211 11 13344568899999999999999873 2 33
Q ss_pred eEEEEC--------------------CCCcEEecCEEEEccccccCcccccc-CCceeeCCCcEEeCCCCCCCCCCeEEe
Q psy2951 810 VTAANL--------------------DNGTTIPADLVIVGIGTVLNTNYLDG-KGVELNGQKAVVVNEYLETNVPGVYAG 868 (1466)
Q Consensus 810 ~~~v~~--------------------~~g~~i~~D~vi~a~G~~p~~~~~~~-~gl~~~~~G~i~vd~~~~t~~~~iya~ 868 (1466)
+..+.+ .+++++++|.||+++|++|++.+... +|++++++|++.+|++++|+.|+|||+
T Consensus 242 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~~~~~~g~i~vd~~~~t~~~~vyai 321 (352)
T PRK12770 242 VEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGIELNRKGEIVVDEKHMTSREGVFAA 321 (352)
T ss_pred EeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCceecCCCcEeeCCCcccCCCCEEEE
Confidence 333321 23457999999999999999888776 889998889999999999999999999
Q ss_pred ccccccCCcccCCceeeeccHHHHHHHHHHHHHHhcc
Q psy2951 869 GDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVE 905 (1466)
Q Consensus 869 GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~ 905 (1466)
|||+..+.. +..|+.||+.||.+|..
T Consensus 322 GD~~~~~~~-----------~~~A~~~g~~aa~~i~~ 347 (352)
T PRK12770 322 GDVVTGPSK-----------IGKAIKSGLRAAQSIHE 347 (352)
T ss_pred cccccCcch-----------HHHHHHHHHHHHHHHHH
Confidence 999875442 36899999999999864
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.4e-28 Score=290.53 Aligned_cols=335 Identities=19% Similarity=0.221 Sum_probs=227.1
Q ss_pred eEECCCCeeec--CCCCCCCCeEEEEEEcCeEEEEEcccchhcccccc---ccccccCCCCCCeEEEEcCchHHHHHHHH
Q psy2951 539 CFNIATGDIED--FPGMDSLPCYKVTIQNDDSVVVQARKDELKNKKRK---LPMAKLSSGNKDTFIVVGGGPSGATCVET 613 (1466)
Q Consensus 539 ~f~~~~G~~~~--~p~~~~l~~~~v~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~vvVIGgG~AGl~aA~~ 613 (1466)
-|..-.|++|. .||...+.. .. .+..+-+...++.+.++... .+...+.+.+.++|+|||||||||++|..
T Consensus 84 p~~~~~grvC~~~~~Ce~~C~~--~~--~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~V~IIG~GpaGl~aA~~ 159 (467)
T TIGR01318 84 TLPEICGRVCPQDRLCEGACTL--ND--EFGAVTIGNLERYITDTALAMGWRPDLSHVVPTGKRVAVIGAGPAGLACADI 159 (467)
T ss_pred CchHhhcccCCCCCChHHhCcC--CC--CCCCccHHHHHHHHHHHHHHhCCCCCCCCcCCCCCeEEEECCCHHHHHHHHH
Confidence 34445577775 477753222 11 24556666666666554322 11111223467899999999999999999
Q ss_pred HHHcCCCccEEEEcCCCCCCCCCCccchhcccCcccccccCHhHhhhCCcEEEEceEEEEeccccccEEEccCCCEEecC
Q psy2951 614 LRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFT 693 (1466)
Q Consensus 614 l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~d 693 (1466)
|+++|++ |+++++.+.+++.. ...........++..+..+++++.|++++.++.+... +.+++ ....||
T Consensus 160 l~~~G~~--V~i~e~~~~~gG~l-~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-------~~~~~-~~~~~D 228 (467)
T TIGR01318 160 LARAGVQ--VVVFDRHPEIGGLL-TFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD-------ISLDD-LLEDYD 228 (467)
T ss_pred HHHcCCe--EEEEecCCCCCcee-eecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc-------cCHHH-HHhcCC
Confidence 9999988 77788776543211 1111101123345556667888899999999866321 11111 124799
Q ss_pred EEEEcCCCCC-CcCCCCCCCC--cEEEecCHHH--HHhhcc---------cCCCCCcEEEECCChHHHHHHHHHhccC-C
Q psy2951 694 KIYLATGSSP-RTISQADGVN--KVFYLRTVED--ANNIAP---------HITPESNVVVIGSSFIGMEAAAFCASKV-K 758 (1466)
Q Consensus 694 ~lviAtG~~~-~~~~~~~g~~--~~~~~~~~~~--~~~~~~---------~~~~~~~vvVvG~G~~g~e~A~~l~~~g-~ 758 (1466)
+||+|||+.+ ..++++ |.+ +++....+.. ...+.. ....+++++|||+|++|+++|..+.++| .
T Consensus 229 ~vilAtGa~~~~~~~i~-g~~~~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~ 307 (467)
T TIGR01318 229 AVFLGVGTYRSMRGGLP-GEDAPGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAA 307 (467)
T ss_pred EEEEEeCCCCCCcCCCC-CcCCCCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCC
Confidence 9999999986 456787 766 5554322111 100100 0124799999999999999999999998 4
Q ss_pred eEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEEC--------------------CCC
Q psy2951 759 SVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANL--------------------DNG 818 (1466)
Q Consensus 759 ~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~--------------------~~g 818 (1466)
+||+++|.+...++....+ .+.+++.||++++++.++++..++++++..+++ .+.
T Consensus 308 ~Vtvv~r~~~~~~~~~~~e-----~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~ 382 (467)
T TIGR01318 308 SVTCAYRRDEANMPGSRRE-----VANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSE 382 (467)
T ss_pred eEEEEEecCcccCCCCHHH-----HHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCce
Confidence 7999999775332333222 244678899999999999997444455544433 112
Q ss_pred cEEecCEEEEccccccCc-cccccCCceeeCCCcEEeC----CCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHH
Q psy2951 819 TTIPADLVIVGIGTVLNT-NYLDGKGVELNGQKAVVVN----EYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQ 893 (1466)
Q Consensus 819 ~~i~~D~vi~a~G~~p~~-~~~~~~gl~~~~~G~i~vd----~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~ 893 (1466)
.++++|.||+++|++|+. .+++..+++++++|++.+| ++++|+.|+|||+|||+..+.. +..|+
T Consensus 383 ~~i~~D~Vi~a~G~~p~~~~~~~~~gl~~~~~g~i~vd~~~~~~~~T~~~gVfa~GD~~~~~~~-----------~~~Ai 451 (467)
T TIGR01318 383 FVLPADVVIMAFGFQPHAMPWLAGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAVRGADL-----------VVTAV 451 (467)
T ss_pred EEEECCEEEECCcCCCCccccccccCccCCCCCCEEeCCccccCccCCCCCEEEECCcCCCccH-----------HHHHH
Confidence 379999999999999984 5777888999889999999 6789999999999999876543 36899
Q ss_pred HHHHHHHHHhcc
Q psy2951 894 YHGRIAALNMVE 905 (1466)
Q Consensus 894 ~~g~~aA~~i~~ 905 (1466)
.+|+.||.+|..
T Consensus 452 ~~G~~aA~~i~~ 463 (467)
T TIGR01318 452 AEGRQAAQGILD 463 (467)
T ss_pred HHHHHHHHHHHH
Confidence 999999999853
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-27 Score=301.19 Aligned_cols=335 Identities=18% Similarity=0.235 Sum_probs=229.3
Q ss_pred eEECCCCeeec--CCCCCCCCeEEEEEEcCeEEEEEcccchhccccc---cccccccCCCCCCeEEEEcCchHHHHHHHH
Q psy2951 539 CFNIATGDIED--FPGMDSLPCYKVTIQNDDSVVVQARKDELKNKKR---KLPMAKLSSGNKDTFIVVGGGPSGATCVET 613 (1466)
Q Consensus 539 ~f~~~~G~~~~--~p~~~~l~~~~v~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~vvVIGgG~AGl~aA~~ 613 (1466)
-|..-+|+++. .||..... .. ..++.+.+...++.+.+... +.+.....+.+.++|+|||||||||+||..
T Consensus 270 p~p~~~grvCp~~~~Ce~~C~--~~--~~~~~v~I~~l~r~~~d~~~~~~~~~~~~~~~~~~~~VaIIGaGpAGLsaA~~ 345 (654)
T PRK12769 270 SLPEITGRVCPQDRLCEGACT--LR--DEYGAVTIGNIERYISDQALAKGWRPDLSQVTKSDKRVAIIGAGPAGLACADV 345 (654)
T ss_pred CchhHhcccCCCCCChHHhcc--CC--CCCCCeecCHHHHHHHHHHHHhCCCCCCcccccCCCEEEEECCCHHHHHHHHH
Confidence 44555788875 36765322 11 13557777777777766543 222111223467899999999999999999
Q ss_pred HHHcCCCccEEEEcCCCCCCCCCCccchhcccCcccccccCHhHhhhCCcEEEEceEEEEeccccccEEEccCCCEEecC
Q psy2951 614 LRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFT 693 (1466)
Q Consensus 614 l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~d 693 (1466)
|++.|++ |+++|+.+.+++... ..........+++.+..+++++.|++++.++.+.. + +.+.+ ....||
T Consensus 346 L~~~G~~--V~V~E~~~~~GG~l~-~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~--~-----i~~~~-~~~~~D 414 (654)
T PRK12769 346 LARNGVA--VTVYDRHPEIGGLLT-FGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGK--D-----ISLES-LLEDYD 414 (654)
T ss_pred HHHCCCe--EEEEecCCCCCceee-ecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCC--c-----CCHHH-HHhcCC
Confidence 9999998 778887765443211 11011112334555566778888999999986531 1 11111 123699
Q ss_pred EEEEcCCCC-CCcCCCCCCCC--cEEEecCH-----HHHHhhcc------cCCCCCcEEEECCChHHHHHHHHHhccCC-
Q psy2951 694 KIYLATGSS-PRTISQADGVN--KVFYLRTV-----EDANNIAP------HITPESNVVVIGSSFIGMEAAAFCASKVK- 758 (1466)
Q Consensus 694 ~lviAtG~~-~~~~~~~~g~~--~~~~~~~~-----~~~~~~~~------~~~~~~~vvVvG~G~~g~e~A~~l~~~g~- 758 (1466)
+||+|||+. +..++++ |.+ +++..... .....+.. ....+++|+|||+|++|+++|..+.++|.
T Consensus 415 avilAtGa~~~~~l~i~-g~~~~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~ 493 (654)
T PRK12769 415 AVFVGVGTYRSMKAGLP-NEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGAS 493 (654)
T ss_pred EEEEeCCCCCCCCCCCC-CCCCCCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCC
Confidence 999999985 4466777 765 55432111 11111110 01357999999999999999998888875
Q ss_pred eEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEEC---------CCC-----------
Q psy2951 759 SVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANL---------DNG----------- 818 (1466)
Q Consensus 759 ~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~---------~~g----------- 818 (1466)
+|+++++.+...++..+. ..+.+++.||+++++..++++..++++++..+++ .+|
T Consensus 494 ~Vt~i~~~~~~~~~~~~~-----e~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~ 568 (654)
T PRK12769 494 NVTCAYRRDEANMPGSKK-----EVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSE 568 (654)
T ss_pred eEEEeEecCCCCCCCCHH-----HHHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCce
Confidence 799999876543333222 2355788999999999999997444566655543 112
Q ss_pred cEEecCEEEEccccccCc-cccccCCceeeCCCcEEeCC----CCCCCCCCeEEeccccccCCcccCCceeeeccHHHHH
Q psy2951 819 TTIPADLVIVGIGTVLNT-NYLDGKGVELNGQKAVVVNE----YLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQ 893 (1466)
Q Consensus 819 ~~i~~D~vi~a~G~~p~~-~~~~~~gl~~~~~G~i~vd~----~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~ 893 (1466)
.++++|+||+|+|+.|+. .+++..+++++++|.|.+|+ +++|+.|+|||+||++..+.. +..|+
T Consensus 569 ~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~~g~~~-----------vv~Ai 637 (654)
T PRK12769 569 FVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGADL-----------VVTAM 637 (654)
T ss_pred EEEECCEEEECccCCCCccccccccCCcCCCCCCEEeCCCcccCcccCCCCEEEcCCcCCCCcH-----------HHHHH
Confidence 269999999999999985 57888899999999999985 489999999999999876543 36899
Q ss_pred HHHHHHHHHhcc
Q psy2951 894 YHGRIAALNMVE 905 (1466)
Q Consensus 894 ~~g~~aA~~i~~ 905 (1466)
.+|+.||.+|..
T Consensus 638 ~~Gr~AA~~I~~ 649 (654)
T PRK12769 638 AEGRHAAQGIID 649 (654)
T ss_pred HHHHHHHHHHHH
Confidence 999999999853
|
|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-27 Score=302.05 Aligned_cols=283 Identities=25% Similarity=0.276 Sum_probs=207.4
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCC-CCchhhccCcccccccChhhhccCCcEEEcCCeEE
Q psy2951 1065 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV-KLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKII 1143 (1466)
Q Consensus 1065 ~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 1143 (1466)
..++|+|||||||||+||..|++.|+ +|||||+++.++.... -++. + ..+.++..+..+.++..|++|+.++.+.
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~--~VtVfE~~~~~GG~l~yGIP~-~-rlp~~vi~~~i~~l~~~Gv~f~~n~~vG 380 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGF--PVTVFEAFHDLGGVLRYGIPE-F-RLPNQLIDDVVEKIKLLGGRFVKNFVVG 380 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC--eEEEEeeCCCCCceEEccCCC-C-cChHHHHHHHHHHHHhhcCeEEEeEEec
Confidence 46899999999999999999999999 9999999875442210 0000 0 1112222333456777899999887332
Q ss_pred EeecCCCCeEEecCCcEEecCeEEEecCC-CCCcCCCCCCCC--cEEEecCHHHHHhhhcc----------cCCCCeEEE
Q psy2951 1144 SDSELNEKKIKLQDGTSIDFTKIYLATGS-SPRTISQADGVN--KVFYLRTVEDANNIAPH----------ITPESNVVV 1210 (1466)
Q Consensus 1144 ~i~d~~~~~v~~~~g~~~~yd~lvlAtG~-~~~~~~~~~g~~--~v~~~~~~~~~~~l~~~----------~~~~~~vvV 1210 (1466)
+.+++++.....||+|+||||+ .|+.+++| |.+ +|+...++.+...+... ...+|+|+|
T Consensus 381 -------~dit~~~l~~~~yDAV~LAtGA~~pr~l~Ip-G~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvV 452 (944)
T PRK12779 381 -------KTATLEDLKAAGFWKIFVGTGAGLPTFMNVP-GEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFV 452 (944)
T ss_pred -------cEEeHHHhccccCCEEEEeCCCCCCCcCCCC-CCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEE
Confidence 3367776666789999999999 69999999 876 78876555444332211 124799999
Q ss_pred EcCCHHHHHHHHHHhcCCCeEEEEcCCCc-CCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecC-C-CcEEEEEc-
Q psy2951 1211 IGSSFIGMEAAAFCASKVKSVTVVGRGAV-PFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNE-K-NDVTAANL- 1286 (1466)
Q Consensus 1211 vG~g~~g~e~a~~l~~~g~~v~vv~~~~~-~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~-~-g~~~~v~l- 1286 (1466)
||+|++|+++|..+.+.|++|+++++.+. .++ . ....+.. ..+.||+++.+..++++. ++ + +++..+++
T Consensus 453 IGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mp-a----~~~e~~~-a~eeGV~~~~~~~p~~i~-~d~~~~~V~~v~~~ 525 (944)
T PRK12779 453 IGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMP-A----RVEELHH-ALEEGINLAVLRAPREFI-GDDHTHFVTHALLD 525 (944)
T ss_pred ECCCHHHHHHHHHHHHcCCEEEEEEecCccccc-c----cHHHHHH-HHHCCCEEEeCcceEEEE-ecCCCCEEEEEEEE
Confidence 99999999999999999999999998753 222 1 1122333 346799999999999997 33 2 24544432
Q ss_pred --------C--------CC--CeeecCEEEEeeccccCccccc-cCCceeeCCCeEEeCC-CccccCCCEEEecccccCC
Q psy2951 1287 --------D--------NG--TTIPADLVIVGIGTVLNTNYLD-GKGVELNGQKAVVVNE-YLETNVPGVYAGGDIAYAP 1346 (1466)
Q Consensus 1287 --------~--------~g--~~i~~D~vv~a~G~~p~~~~~~-~~gl~~~~~G~i~vd~-~~~t~~~~v~a~GD~a~~p 1346 (1466)
. +| .+++||.||+|+|..|+..+.. ..|+..+.+|.|.||+ +++|+.|+|||+|||+..+
T Consensus 526 ~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~~~~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G~ 605 (944)
T PRK12779 526 VNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARGG 605 (944)
T ss_pred EEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChhhhhcccCceECCCCCEEECCCCCccCCCCEEEEEcCCCCh
Confidence 1 22 3589999999999999975433 3578888889999995 6899999999999998765
Q ss_pred CccCCCceeeeecHHHHHHHHHHHHHHhcCC
Q psy2951 1347 LHSFYNKNASIGHYQLAQYHGRIAALNMVEK 1377 (1466)
Q Consensus 1347 ~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~ 1377 (1466)
... ..|+.+|+.||.+|...
T Consensus 606 ~~v-----------v~Ai~eGr~AA~~I~~~ 625 (944)
T PRK12779 606 STA-----------IRAAGDGQAAAKEIVGE 625 (944)
T ss_pred HHH-----------HHHHHHHHHHHHHHHHH
Confidence 443 67999999999999863
|
|
| >PRK12770 putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-27 Score=276.75 Aligned_cols=285 Identities=20% Similarity=0.275 Sum_probs=203.8
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCC-CchhhccCcccccccChhhhccCCcEEEcCCeEE
Q psy2951 1065 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK-LSKQLDIKADSILLRTEEFYKDNDIHVIKGKKII 1143 (1466)
Q Consensus 1065 ~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 1143 (1466)
..++|+|||+|++|+++|..|++.|. +|++||+.+.+...... +... ..+.+.+ ....+.+.+.+++++.++.+.
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~--~v~lie~~~~~gg~~~~~~~~~-~~~~~~~-~~~~~~l~~~~i~~~~~~~v~ 92 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGY--EVHVYDKLPEPGGLMLFGIPEF-RIPIERV-REGVKELEEAGVVFHTRTKVC 92 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC--cEEEEeCCCCCCceeeecCccc-ccCHHHH-HHHHHHHHhCCeEEecCcEEe
Confidence 45789999999999999999999998 99999998765421100 0000 0011111 112233455699999998776
Q ss_pred EeecCC---------CCeEEecCCcEEecCeEEEecCC-CCCcCCCCCCCC--cEEEecCHHHHHhhhcc---------c
Q psy2951 1144 SDSELN---------EKKIKLQDGTSIDFTKIYLATGS-SPRTISQADGVN--KVFYLRTVEDANNIAPH---------I 1202 (1466)
Q Consensus 1144 ~i~d~~---------~~~v~~~~g~~~~yd~lvlAtG~-~~~~~~~~~g~~--~v~~~~~~~~~~~l~~~---------~ 1202 (1466)
.+ +.. .+.+..++ ..+.||+||||||+ .|+.|++| |.+ +++.. .+....+... .
T Consensus 93 ~~-~~~~~~~~~~~~~~~~~~~~-~~~~~d~lviAtGs~~~~~~~ip-g~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~ 167 (352)
T PRK12770 93 CG-EPLHEEEGDEFVERIVSLEE-LVKKYDAVLIATGTWKSRKLGIP-GEDLPGVYSA--LEYLFRIRAAKLGYLPWEKV 167 (352)
T ss_pred ec-cccccccccccccccCCHHH-HHhhCCEEEEEeCCCCCCcCCCC-CccccCceeH--HHHHHHhhhccccccccccc
Confidence 55 330 11112222 24789999999999 58888898 876 55543 2333222211 1
Q ss_pred --CCCCeEEEEcCCHHHHHHHHHHhcCCCe-EEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCC
Q psy2951 1203 --TPESNVVVIGSSFIGMEAAAFCASKVKS-VTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKN 1279 (1466)
Q Consensus 1203 --~~~~~vvVvG~g~~g~e~a~~l~~~g~~-v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g 1279 (1466)
..+++++|||+|++|+|+|..|.+.|.+ |+++++.+.... .....+.+.++++||+++++..+.+++ .+ +
T Consensus 168 ~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~-----~~~~~~~~~l~~~gi~i~~~~~v~~i~-~~-~ 240 (352)
T PRK12770 168 PPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEA-----PAGKYEIERLIARGVEFLELVTPVRII-GE-G 240 (352)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhC-----CCCHHHHHHHHHcCCEEeeccCceeee-cC-C
Confidence 1268999999999999999999988987 999998653211 111334456889999999999999997 33 3
Q ss_pred cEEEEEc--------------------CCCCeeecCEEEEeeccccCcccccc-CCceeeCCCeEEeCCCccccCCCEEE
Q psy2951 1280 DVTAANL--------------------DNGTTIPADLVIVGIGTVLNTNYLDG-KGVELNGQKAVVVNEYLETNVPGVYA 1338 (1466)
Q Consensus 1280 ~~~~v~l--------------------~~g~~i~~D~vv~a~G~~p~~~~~~~-~gl~~~~~G~i~vd~~~~t~~~~v~a 1338 (1466)
++..|++ .+++++++|.|++++|..|++.++.+ .|+.++.+|++.||++++|+.|+|||
T Consensus 241 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~~~~~~g~i~vd~~~~t~~~~vya 320 (352)
T PRK12770 241 RVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGIELNRKGEIVVDEKHMTSREGVFA 320 (352)
T ss_pred cEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCceecCCCcEeeCCCcccCCCCEEE
Confidence 4444442 12357999999999999999888776 88988888899999999999999999
Q ss_pred ecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcC
Q psy2951 1339 GGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVE 1376 (1466)
Q Consensus 1339 ~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g 1376 (1466)
+|||+..|... ..|..||+.||.+|..
T Consensus 321 iGD~~~~~~~~-----------~~A~~~g~~aa~~i~~ 347 (352)
T PRK12770 321 AGDVVTGPSKI-----------GKAIKSGLRAAQSIHE 347 (352)
T ss_pred EcccccCcchH-----------HHHHHHHHHHHHHHHH
Confidence 99998765543 7899999999999864
|
|
| >PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.1e-27 Score=285.14 Aligned_cols=318 Identities=24% Similarity=0.305 Sum_probs=214.9
Q ss_pred cce-eee-ccCcchhhhhhhhhhhcccCccccc--cCCCCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCC--
Q psy2951 6 CYK-VTI-QNDDSVVVQARKDELKNKKRKLPMA--KLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENF-- 79 (1466)
Q Consensus 6 ~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~-- 79 (1466)
|.. |.+ ..++|+.|..++++........... ...+...++|+||||||||+++|..|++.|+++.|++..+...
T Consensus 99 C~~~C~~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~ 178 (457)
T PRK11749 99 CEGACVRGKKGEPVAIGRLERYITDWAMETGWVLFKRAPKTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGL 178 (457)
T ss_pred HHHHhcCCCCCCCcchHHHHHHHHHHHHhcCCCCCCCCccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcE
Confidence 555 443 3377899998888766442221111 1223456899999999999999999999999887765443211
Q ss_pred CCCCCCccchhcccCcccccccChhhhhcCCeEEEeCceEEEeccccccEEEecCCcEEecCEEEEccCCC-CCCCCCCC
Q psy2951 80 LPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSS-PRTISQAD 158 (1466)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~~~~~d~lviAtG~~-~~~~~~~~ 158 (1466)
..+..+.. ....++..+..+++++.+++++.++.+.. .+.+.+. .+.||+||+|||+. |+.+ .++
T Consensus 179 l~~gip~~-----~~~~~~~~~~~~~l~~~gv~~~~~~~v~~-------~v~~~~~-~~~~d~vvlAtGa~~~~~~-~i~ 244 (457)
T PRK11749 179 LRYGIPEF-----RLPKDIVDREVERLLKLGVEIRTNTEVGR-------DITLDEL-RAGYDAVFIGTGAGLPRFL-GIP 244 (457)
T ss_pred eeccCCCc-----cCCHHHHHHHHHHHHHcCCEEEeCCEECC-------ccCHHHH-HhhCCEEEEccCCCCCCCC-CCC
Confidence 11111110 11234445556677888999998886521 1222222 26799999999996 5543 344
Q ss_pred CCC--cEEEecCHHHHHhh---cccCCCCCcEEEECCCHhHHHHHHHHhhCCC-EEEEEeecCcccccccCHHHHHHHHH
Q psy2951 159 GVN--KVFYLRTVEDANNI---APHITPESNVVVIGSSFIGMEAAAFCASKVK-SVTVVGRGAVPFQESLGKEVGERITK 232 (1466)
Q Consensus 159 ~~~--~~~~~~~~~~~~~~---~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~~~~~~~~~~~~~l~~ 232 (1466)
+.+ +++........... ...+..+++|+|||+|++|+|+|..+.+.|. +|+++++.+....+.. . ...+
T Consensus 245 G~~~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~-~----~~~~ 319 (457)
T PRK11749 245 GENLGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPAS-E----EEVE 319 (457)
T ss_pred CccCCCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCC-H----HHHH
Confidence 432 33332111111111 0223367899999999999999999999987 8999998653221111 1 2345
Q ss_pred HHHhCCcEEEcCceEEEEEecCCCCeEEEEc-------------------CCCcEEeccEEEEeeccccCccccc-cCCc
Q psy2951 233 LFESKGVKFVMKANVSSFEKNEKNDVTAANL-------------------DNGTTIPADLVIVGIGTVLNTNYLD-GKGV 292 (1466)
Q Consensus 233 ~l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~-------------------~~g~~i~~D~Vi~a~G~~p~~~~l~-~~gl 292 (1466)
.+++.||++++++.+.++..+++ .+..+.+ .+++++++|.||+|+|++|+..++. ..++
T Consensus 320 ~~~~~GV~i~~~~~v~~i~~~~~-~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~~~gl 398 (457)
T PRK11749 320 HAKEEGVEFEWLAAPVEILGDEG-RVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGL 398 (457)
T ss_pred HHHHCCCEEEecCCcEEEEecCC-ceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCchhhccccCc
Confidence 67889999999999999976542 2222221 2335799999999999999988764 5678
Q ss_pred eecCCccEEECC-CCCcCCCCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCC
Q psy2951 293 ELNGQKAVVVNE-YLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEK 354 (1466)
Q Consensus 293 ~~~~~g~i~vd~-~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~ 354 (1466)
+++++|+|.||+ +++|+.|+|||+|||+..+ .++..|+.+|+.||.+|...
T Consensus 399 ~~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~~-----------~~~~~A~~~G~~aA~~I~~~ 450 (457)
T PRK11749 399 ELNRWGTIIADDETGRTSLPGVFAGGDIVTGA-----------ATVVWAVGDGKDAAEAIHEY 450 (457)
T ss_pred cCCCCCCEEeCCCCCccCCCCEEEeCCcCCCc-----------hHHHHHHHHHHHHHHHHHHH
Confidence 888889999998 7899999999999998532 35678999999999998743
|
|
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=287.50 Aligned_cols=279 Identities=24% Similarity=0.341 Sum_probs=203.2
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchh--hc----cCcccccccChhhhccCCcEEEc
Q psy2951 1065 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQ--LD----IKADSILLRTEEFYKDNDIHVIK 1138 (1466)
Q Consensus 1065 ~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~--~~----~~~~~~~~~~~~~~~~~~v~~~~ 1138 (1466)
..++|+|||||+||++||..|++.|+ +|+|||++.. +......+.. +. .....+.....+..+..+++++
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~--~V~liE~~~~-GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~- 78 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKL--DTLIIEKDDF-GGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL- 78 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCC--CEEEEecCCC-CceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe-
Confidence 35799999999999999999999998 9999998643 2211100000 00 0111222222334556789986
Q ss_pred CCeEEEeecCCCC--eEEecCCcEEecCeEEEecCCCCCcCCCCCCCC-----cEEEecCHHHHHhhhcccCCCCeEEEE
Q psy2951 1139 GKKIISDSELNEK--KIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-----KVFYLRTVEDANNIAPHITPESNVVVI 1211 (1466)
Q Consensus 1139 ~~~v~~i~d~~~~--~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~-----~v~~~~~~~~~~~l~~~~~~~~~vvVv 1211 (1466)
.++|+.+ +...+ .|.+.++ .+.|++||||||+.|+.+++| |.+ ++++....+. ....+++|+||
T Consensus 79 ~~~V~~i-~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~~~ip-G~~~~~~~~v~~~~~~~~------~~~~g~~VvVI 149 (555)
T TIGR03143 79 QAEVLDV-DFDGDIKTIKTARG-DYKTLAVLIATGASPRKLGFP-GEEEFTGRGVAYCATCDG------EFFTGMDVFVI 149 (555)
T ss_pred ccEEEEE-EecCCEEEEEecCC-EEEEeEEEECCCCccCCCCCC-CHHHhCCceEEEEeecCh------hhcCCCEEEEE
Confidence 5569999 87653 4666555 689999999999999999999 854 4555433222 12248999999
Q ss_pred cCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEE---cCC
Q psy2951 1212 GSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAAN---LDN 1288 (1466)
Q Consensus 1212 G~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~---l~~ 1288 (1466)
|+|++|+|+|..|++.|.+|+++++.+.... .... ..+.++.+||++++++.|+++. ++ +.+..+. ..+
T Consensus 150 GgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~---~~~~---~~~~~~~~gV~i~~~~~V~~i~-~~-~~v~~v~~~~~~~ 221 (555)
T TIGR03143 150 GGGFAAAEEAVFLTRYASKVTVIVREPDFTC---AKLI---AEKVKNHPKIEVKFNTELKEAT-GD-DGLRYAKFVNNVT 221 (555)
T ss_pred CCCHHHHHHHHHHHccCCEEEEEEeCCcccc---CHHH---HHHHHhCCCcEEEeCCEEEEEE-cC-CcEEEEEEEECCC
Confidence 9999999999999999999999999875421 2222 2333456799999999999998 33 3443333 346
Q ss_pred CCee----ecCE----EEEeeccccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecH
Q psy2951 1289 GTTI----PADL----VIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHY 1360 (1466)
Q Consensus 1289 g~~i----~~D~----vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~ 1360 (1466)
|++. ++|. |++++|..|++++++. ++.++.+|+|.||++++|+.|+|||+|||+... ..+|
T Consensus 222 G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~-~l~l~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~----------~~~v 290 (555)
T TIGR03143 222 GEITEYKAPKDAGTFGVFVFVGYAPSSELFKG-VVELDKRGYIPTNEDMETNVPGVYAAGDLRPKE----------LRQV 290 (555)
T ss_pred CCEEEEeccccccceEEEEEeCCCCChhHHhh-hcccCCCCeEEeCCccccCCCCEEEceeccCCC----------cchh
Confidence 7543 4676 9999999999998875 688888899999999999999999999997421 1234
Q ss_pred HHHHHHHHHHHHHhc
Q psy2951 1361 QLAQYHGRIAALNMV 1375 (1466)
Q Consensus 1361 ~~A~~qa~~aa~~i~ 1375 (1466)
..|..||+.||.+|.
T Consensus 291 ~~A~~~G~~Aa~~i~ 305 (555)
T TIGR03143 291 VTAVADGAIAATSAE 305 (555)
T ss_pred eeHHhhHHHHHHHHH
Confidence 679999999999986
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-27 Score=302.23 Aligned_cols=281 Identities=26% Similarity=0.354 Sum_probs=210.1
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCC----CCCCCCchhhccCcccccccChhhhccCCcEEEcC
Q psy2951 1064 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP----YDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKG 1139 (1466)
Q Consensus 1064 ~~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 1139 (1466)
...++|+|||||+||++||..|++.|+ +|+|||+++.++ |..|.. ..+..+..+..+++.+.|++++.+
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~--~V~v~e~~~~~GG~l~~gip~~-----rlp~~~~~~~~~~l~~~gv~~~~~ 501 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGY--DVTVFEALHEIGGVLKYGIPEF-----RLPKKIVDVEIENLKKLGVKFETD 501 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCC--eEEEEecCCCCCCeeeecCCCC-----CCCHHHHHHHHHHHHHCCCEEECC
Confidence 456799999999999999999999999 999999876533 211110 011122223345677789999998
Q ss_pred CeEEEeecCCCCeEEecCCcEEecCeEEEecCC-CCCcCCCCCCCC--cEEEecCHHHHHhhhc--------ccCCCCeE
Q psy2951 1140 KKIISDSELNEKKIKLQDGTSIDFTKIYLATGS-SPRTISQADGVN--KVFYLRTVEDANNIAP--------HITPESNV 1208 (1466)
Q Consensus 1140 ~~v~~i~d~~~~~v~~~~g~~~~yd~lvlAtG~-~~~~~~~~~g~~--~v~~~~~~~~~~~l~~--------~~~~~~~v 1208 (1466)
+.+. +.+.+++.....||+||||||+ .|+.+++| |.+ ++++..++.+...+.. ....+++|
T Consensus 502 ~~v~-------~~v~~~~l~~~~ydavvlAtGa~~~~~l~ip-G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~V 573 (752)
T PRK12778 502 VIVG-------KTITIEELEEEGFKGIFIASGAGLPNFMNIP-GENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKV 573 (752)
T ss_pred CEEC-------CcCCHHHHhhcCCCEEEEeCCCCCCCCCCCC-CCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcE
Confidence 7431 2355555556779999999999 69999999 876 7777665444333221 12357999
Q ss_pred EEEcCCHHHHHHHHHHhcCCCe-EEEEcCCCcC-CcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEc
Q psy2951 1209 VVIGSSFIGMEAAAFCASKVKS-VTVVGRGAVP-FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANL 1286 (1466)
Q Consensus 1209 vVvG~g~~g~e~a~~l~~~g~~-v~vv~~~~~~-~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l 1286 (1466)
+|||+|++|+|+|..+.+.|.+ |+++++.+.. ++ ....+ + +.+++.||++++++.+.++...+++++..|++
T Consensus 574 vVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~----~~~~e-~-~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~ 647 (752)
T PRK12778 574 AVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMP----ARLEE-V-KHAKEEGIEFLTLHNPIEYLADEKGWVKQVVL 647 (752)
T ss_pred EEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCC----CCHHH-H-HHHHHcCCEEEecCcceEEEECCCCEEEEEEE
Confidence 9999999999999999999987 9999987642 22 11111 1 34678899999999999987334566666654
Q ss_pred C---------CC-----------CeeecCEEEEeeccccCcccccc-CCceeeCCCeEEeCCCccccCCCEEEecccccC
Q psy2951 1287 D---------NG-----------TTIPADLVIVGIGTVLNTNYLDG-KGVELNGQKAVVVNEYLETNVPGVYAGGDIAYA 1345 (1466)
Q Consensus 1287 ~---------~g-----------~~i~~D~vv~a~G~~p~~~~~~~-~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~ 1345 (1466)
. +| .+++||.||+|+|..|+..++.. .|+.++.+|+|.||++++|+.|+|||+|||+..
T Consensus 648 ~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~gVfA~GD~~~g 727 (752)
T PRK12778 648 QKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSIPGLELNRKGTIVVDEEMQSSIPGIYAGGDIVRG 727 (752)
T ss_pred EEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCccccccccCceECCCCCEEeCCCCCCCCCCEEEeCCccCC
Confidence 2 22 25899999999999999887765 488888889999999999999999999999876
Q ss_pred CCccCCCceeeeecHHHHHHHHHHHHHHhcC
Q psy2951 1346 PLHSFYNKNASIGHYQLAQYHGRIAALNMVE 1376 (1466)
Q Consensus 1346 p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g 1376 (1466)
+.. +..|+.||+.||.+|..
T Consensus 728 ~~~-----------vv~Av~~G~~AA~~I~~ 747 (752)
T PRK12778 728 GAT-----------VILAMGDGKRAAAAIDE 747 (752)
T ss_pred cHH-----------HHHHHHHHHHHHHHHHH
Confidence 543 37899999999999863
|
|
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-27 Score=287.55 Aligned_cols=338 Identities=21% Similarity=0.248 Sum_probs=220.8
Q ss_pred EECCCCeeecCCCCCCCCeEEEEEEcCeEEEEEcccchhccccccccc---cccCCCCCCeEEEEcCchHHHHHHHHHHH
Q psy2951 540 FNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQARKDELKNKKRKLPM---AKLSSGNKDTFIVVGGGPSGATCVETLRQ 616 (1466)
Q Consensus 540 f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~vvVIGgG~AGl~aA~~l~~ 616 (1466)
|..-.|++|..||...+..-. .+..+-+...++...+......+ ..+.+...++|+||||||||++||..|++
T Consensus 89 ~p~~~grvC~~~Ce~~C~~~~----~~~~v~I~~l~r~~~~~~~~~~~~~~~~~~~~~~~~V~IIGaG~aGl~aA~~L~~ 164 (485)
T TIGR01317 89 FPEFTGRVCPAPCEGACTLGI----SEDPVGIKSIERIIIDKGFQEGWVQPRPPSKRTGKKVAVVGSGPAGLAAADQLNR 164 (485)
T ss_pred chhHHhCcCChhhHHhccCCC----CCCCcchhHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECCcHHHHHHHHHHHH
Confidence 344567777777765322111 13344455555554443221111 11223456899999999999999999999
Q ss_pred cCCCccEEEEcCCCCCCCCCC-ccchhcccCcccccccCHhHhhhCCcEEEEceEEEEeccccccEEEccCCCEEecCEE
Q psy2951 617 NGFTGKLYFITDENFLPYDRV-KLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKI 695 (1466)
Q Consensus 617 ~g~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~d~l 695 (1466)
.|++ |+++++.+.+++... .+. .+ ....++..+..+++++.|++++.++.+.. +... +.....||+|
T Consensus 165 ~g~~--V~v~e~~~~~gG~l~~gip-~~-~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~--~~~~------~~~~~~~d~V 232 (485)
T TIGR01317 165 AGHT--VTVFEREDRCGGLLMYGIP-NM-KLDKAIVDRRIDLLSAEGIDFVTNTEIGV--DISA------DELKEQFDAV 232 (485)
T ss_pred cCCe--EEEEecCCCCCceeeccCC-Cc-cCCHHHHHHHHHHHHhCCCEEECCCEeCC--ccCH------HHHHhhCCEE
Confidence 9987 888887764332111 000 00 11223455556778889999999996631 1111 1123579999
Q ss_pred EEcCCCC-CCcCCCCCCCC--cEEEecCH-HHHHh---------hcccCCCCCcEEEECCChHHHHHHHHHhccC-CeEE
Q psy2951 696 YLATGSS-PRTISQADGVN--KVFYLRTV-EDANN---------IAPHITPESNVVVIGSSFIGMEAAAFCASKV-KSVT 761 (1466)
Q Consensus 696 viAtG~~-~~~~~~~~g~~--~~~~~~~~-~~~~~---------~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g-~~V~ 761 (1466)
|+|||+. |+.++++ |.+ ++++.... .+... +......+|+|+|||+|++|+|+|..+.+++ .+|+
T Consensus 233 ilAtGa~~~~~l~i~-G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~ 311 (485)
T TIGR01317 233 VLAGGATKPRDLPIP-GRELKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVH 311 (485)
T ss_pred EEccCCCCCCcCCCC-CcCCCCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEE
Confidence 9999997 8889999 866 56543222 11111 0111235899999999999999987777665 6899
Q ss_pred EEeecCccCcccc--------CH--HHHHHHHHHHHhcCcEE-EccceEEEEEecCCCceEEEEC--------CCC----
Q psy2951 762 VVGRGAVPFQESL--------GK--EVGERITKLFESKGVKF-VMKANVSSFEKNEKNDVTAANL--------DNG---- 818 (1466)
Q Consensus 762 lv~~~~~~~~~~~--------~~--~~~~~~~~~l~~~gv~~-~~~~~v~~i~~~~~~~~~~v~~--------~~g---- 818 (1466)
++++.+..+.... +. +....+++..+..||.+ +++..+.+|..++++++..+.+ ++|
T Consensus 312 vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p 391 (485)
T TIGR01317 312 QFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQF 391 (485)
T ss_pred EEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccc
Confidence 9998775432111 01 12223444444567654 5677788886433355555442 123
Q ss_pred -------cEEecCEEEEccccc-cCccccccCCceeeCCCcEEe-CCCCCCCCCCeEEeccccccCCcccCCceeeeccH
Q psy2951 819 -------TTIPADLVIVGIGTV-LNTNYLDGKGVELNGQKAVVV-NEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHY 889 (1466)
Q Consensus 819 -------~~i~~D~vi~a~G~~-p~~~~~~~~gl~~~~~G~i~v-d~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~ 889 (1466)
.++++|.||+|+|+. |++.+++..+++++++|++.+ |++++|+.|+|||+|||+..+.. .
T Consensus 392 ~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~gl~~~~~G~i~~~~~~~~Ts~~gVfAaGD~~~g~~~-----------~ 460 (485)
T TIGR01317 392 VEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGVKKTRRGNISAGYDDYSTSIPGVFAAGDCRRGQSL-----------I 460 (485)
T ss_pred eecCCceEEEECCEEEEccCcCCCccccccccCcccCCCCCEEecCCCceECCCCEEEeeccCCCcHH-----------H
Confidence 279999999999996 888899988999888898854 57899999999999999865432 3
Q ss_pred HHHHHHHHHHHHHhcc
Q psy2951 890 QLAQYHGRIAALNMVE 905 (1466)
Q Consensus 890 ~~A~~~g~~aA~~i~~ 905 (1466)
..|+.+|+.||.+|..
T Consensus 461 ~~Av~~G~~AA~~i~~ 476 (485)
T TIGR01317 461 VWAINEGRKAAAAVDR 476 (485)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6799999999999864
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >KOG2495|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-26 Score=252.06 Aligned_cols=296 Identities=21% Similarity=0.312 Sum_probs=235.8
Q ss_pred cCCCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcc-cCcccccccCHhHhhhC--CcEEE
Q psy2951 590 LSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD-IKADSILLRTEEFYKDN--DIHVI 666 (1466)
Q Consensus 590 ~~~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--gv~~~ 666 (1466)
+....+++|||+|.|.+|.+.+..|-..-++ |+++++.+++-|.+...+...+ ....++.+......... +++++
T Consensus 50 ~~~~kKk~vVVLGsGW~a~S~lk~ldts~Yd--V~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~ 127 (491)
T KOG2495|consen 50 KNGGKKKRVVVLGSGWGAISLLKKLDTSLYD--VTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYL 127 (491)
T ss_pred CCCCCCceEEEEcCchHHHHHHHhccccccc--eEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEE
Confidence 4456689999999999999999999887777 9999999998887766665555 56667777777666555 56666
Q ss_pred EceEEEEeccccccEEEcc----CC----CEEecCEEEEcCCCCCCcCCCCCCCC-cEEEecCHHHHHhhcccC------
Q psy2951 667 KGKKIISDSELNEKKIKLQ----DG----TSIDFTKIYLATGSSPRTISQADGVN-KVFYLRTVEDANNIAPHI------ 731 (1466)
Q Consensus 667 ~~~~v~~i~~~~~~~v~~~----~~----~~~~~d~lviAtG~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~------ 731 (1466)
... ...+ |+++++|++. ++ ..+.||+||+|+|+.+..+.+| |.. +.+.++.++++++++..+
T Consensus 128 eAe-c~~i-Dp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgip-GV~e~~~FLKEv~dAqeIR~~~~~~le~ 204 (491)
T KOG2495|consen 128 EAE-CTKI-DPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGIP-GVEENAHFLKEVEDAQEIRRKVIDNLEK 204 (491)
T ss_pred ecc-cEee-cccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCCCCC-chhhchhhhhhhhHHHHHHHHHHHHHHH
Confidence 655 6778 8988887764 33 4789999999999999999999 876 778888999998874332
Q ss_pred -----------CCCCcEEEECCChHHHHHHHHHhcc--------------CCeEEEEeecCccCccccCHHHHHHHHHHH
Q psy2951 732 -----------TPESNVVVIGSSFIGMEAAAFCASK--------------VKSVTVVGRGAVPFQESLGKEVGERITKLF 786 (1466)
Q Consensus 732 -----------~~~~~vvVvG~G~~g~e~A~~l~~~--------------g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l 786 (1466)
.+--++||||||++|+|+|.+|+.. -.+||+++..+..+ ..|+..+.++.++.+
T Consensus 205 a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL-~mFdkrl~~yae~~f 283 (491)
T KOG2495|consen 205 AELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHIL-NMFDKRLVEYAENQF 283 (491)
T ss_pred hhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHH-HHHHHHHHHHHHHHh
Confidence 0123699999999999999888642 36799999998777 689999999999999
Q ss_pred HhcCcEEEccceEEEEEecCCCceEEEECCCC--cEEecCEEEEccccccCccccccCCceeeCCC--cEEeCCCCCC-C
Q psy2951 787 ESKGVKFVMKANVSSFEKNEKNDVTAANLDNG--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQK--AVVVNEYLET-N 861 (1466)
Q Consensus 787 ~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G--~i~vd~~~~t-~ 861 (1466)
.+.||++.+++.|+.+++. + ..+...+| ++|++-+++|+||..|. ++.+.+.-.+++.| .+.+|++||. +
T Consensus 284 ~~~~I~~~~~t~Vk~V~~~-~---I~~~~~~g~~~~iPYG~lVWatG~~~r-p~~k~lm~~i~e~~rr~L~vDE~LrV~G 358 (491)
T KOG2495|consen 284 VRDGIDLDTGTMVKKVTEK-T---IHAKTKDGEIEEIPYGLLVWATGNGPR-PVIKDLMKQIDEQGRRGLAVDEWLRVKG 358 (491)
T ss_pred hhccceeecccEEEeecCc-E---EEEEcCCCceeeecceEEEecCCCCCc-hhhhhHhhcCCccCceeeeeeceeeccC
Confidence 9999999999999999732 1 24444555 48999999999999887 45555444556666 8999999996 6
Q ss_pred CCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhc
Q psy2951 862 VPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMV 904 (1466)
Q Consensus 862 ~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~ 904 (1466)
.+||||+|||+..+... ++++.|.+||.++|.++-
T Consensus 359 ~~nvfAiGDca~~~~~~--------~tAQVA~QqG~yLAk~fn 393 (491)
T KOG2495|consen 359 VKNVFAIGDCADQRGLK--------PTAQVAEQQGAYLAKNFN 393 (491)
T ss_pred cCceEEeccccccccCc--------cHHHHHHHHHHHHHHHHH
Confidence 89999999999554433 578999999999999973
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-26 Score=291.70 Aligned_cols=335 Identities=18% Similarity=0.208 Sum_probs=228.1
Q ss_pred eEECCCCeeec--CCCCCCCCeEEEEEEcCeEEEEEcccchhccccc---cccccccCCCCCCeEEEEcCchHHHHHHHH
Q psy2951 539 CFNIATGDIED--FPGMDSLPCYKVTIQNDDSVVVQARKDELKNKKR---KLPMAKLSSGNKDTFIVVGGGPSGATCVET 613 (1466)
Q Consensus 539 ~f~~~~G~~~~--~p~~~~l~~~~v~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~vvVIGgG~AGl~aA~~ 613 (1466)
-|..-+|+++. .||...... . ..++.+.+...++.+.+++. +.+..++.+++.++|+|||||||||++|..
T Consensus 253 p~p~~~grvCp~~~~Ce~~C~~--~--~~~~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~kkVaIIG~GpaGl~aA~~ 328 (639)
T PRK12809 253 SLPEICGRVCPQDRLCEGACTL--K--DHSGAVSIGNLERYITDTALAMGWRPDVSKVVPRSEKVAVIGAGPAGLGCADI 328 (639)
T ss_pred CcchhhcccCCCCCChHHhccC--C--CcCCCcChhHHHHHHHHHHHHhCCCCCCCcccCCCCEEEEECcCHHHHHHHHH
Confidence 45556788885 478753221 1 13456777777776666542 222222223467999999999999999999
Q ss_pred HHHcCCCccEEEEcCCCCCCCCCCccchhcccCcccccccCHhHhhhCCcEEEEceEEEEeccccccEEEccCCCEEecC
Q psy2951 614 LRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFT 693 (1466)
Q Consensus 614 l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~d 693 (1466)
|+++|++ |+++++.+.+++.. ...........++.....+++++.|+++++++++... +.+.+ ....||
T Consensus 329 L~~~G~~--Vtv~e~~~~~GG~l-~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-------~~~~~-l~~~~D 397 (639)
T PRK12809 329 LARAGVQ--VDVFDRHPEIGGML-TFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRD-------ITFSD-LTSEYD 397 (639)
T ss_pred HHHcCCc--EEEEeCCCCCCCee-eccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCc-------CCHHH-HHhcCC
Confidence 9999998 77888776543221 1110001122344555567788899999999865211 11111 234699
Q ss_pred EEEEcCCCC-CCcCCCCCCCC--cEEEecCHH-----HHHhhcc------cCCCCCcEEEECCChHHHHHHHHHhccC-C
Q psy2951 694 KIYLATGSS-PRTISQADGVN--KVFYLRTVE-----DANNIAP------HITPESNVVVIGSSFIGMEAAAFCASKV-K 758 (1466)
Q Consensus 694 ~lviAtG~~-~~~~~~~~g~~--~~~~~~~~~-----~~~~~~~------~~~~~~~vvVvG~G~~g~e~A~~l~~~g-~ 758 (1466)
+||+|||+. +..++++ |.+ +++....+. +...+.. ....+|+|+|||+|++++++|..+.++| .
T Consensus 398 aV~latGa~~~~~~~i~-g~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~ 476 (639)
T PRK12809 398 AVFIGVGTYGMMRADLP-HEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAA 476 (639)
T ss_pred EEEEeCCCCCCCCCCCC-CCccCCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCC
Confidence 999999986 4556777 765 444321111 1111110 1125899999999999999999888887 5
Q ss_pred eEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEEC--------------------CCC
Q psy2951 759 SVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANL--------------------DNG 818 (1466)
Q Consensus 759 ~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~--------------------~~g 818 (1466)
+||+++|.+...++....++ ..++++||+|+++..+++|..++++++..+.+ .+.
T Consensus 477 ~Vt~v~rr~~~~~~~~~~e~-----~~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~ 551 (639)
T PRK12809 477 SVTCAYRRDEVSMPGSRKEV-----VNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSE 551 (639)
T ss_pred eEEEeeecCcccCCCCHHHH-----HHHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCce
Confidence 89999998654333332322 23578899999999999997444555554422 112
Q ss_pred cEEecCEEEEccccccCc-cccccCCceeeCCCcEEeCC----CCCCCCCCeEEeccccccCCcccCCceeeeccHHHHH
Q psy2951 819 TTIPADLVIVGIGTVLNT-NYLDGKGVELNGQKAVVVNE----YLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQ 893 (1466)
Q Consensus 819 ~~i~~D~vi~a~G~~p~~-~~~~~~gl~~~~~G~i~vd~----~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~ 893 (1466)
.++++|.||+|+|+.|+. .+++..+++++++|+|.+|+ +++|+.|+|||+||++..+.. +..|+
T Consensus 552 ~~i~aD~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~~g~~~-----------vv~Ai 620 (639)
T PRK12809 552 FELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGADL-----------VVTAM 620 (639)
T ss_pred EEEECCEEEECcCCCCCccccccccCcccCCCCCEEeCCCcccCcccCCCCEEEcCCCCCCchH-----------HHHHH
Confidence 378999999999999974 57788899999999999985 489999999999999876543 36899
Q ss_pred HHHHHHHHHhcc
Q psy2951 894 YHGRIAALNMVE 905 (1466)
Q Consensus 894 ~~g~~aA~~i~~ 905 (1466)
.+|+.||.+|..
T Consensus 621 ~~Gr~AA~~i~~ 632 (639)
T PRK12809 621 AAGRQAARDMLT 632 (639)
T ss_pred HHHHHHHHHHHH
Confidence 999999999864
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-26 Score=279.07 Aligned_cols=288 Identities=21% Similarity=0.284 Sum_probs=205.1
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCC-CCCchhhccCcccccccChhhhccCCcEEEcCCeE
Q psy2951 1064 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR-VKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKI 1142 (1466)
Q Consensus 1064 ~~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 1142 (1466)
...++|+|||||+||++||..|++.|+ +|+|||+++.++... ..++.. .....+.....+++.+.|++++.++.+
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~--~V~vie~~~~~GG~l~~gip~~--~~~~~~~~~~~~~~~~~gv~~~~~~~v 216 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGH--KVTVFERADRIGGLLRYGIPDF--KLEKEVIDRRIELMEAEGIEFRTNVEV 216 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCC--cEEEEecCCCCCceeeecCCcc--cCCHHHHHHHHHHHHhCCcEEEeCCEE
Confidence 345789999999999999999999998 999999987654211 000000 011122222335677889999999844
Q ss_pred EEeecCCCCeEEecCCcEEecCeEEEecCCC-CCcCCCCCCCC--cEEEecCHH-HHH-hhhc------ccCCCCeEEEE
Q psy2951 1143 ISDSELNEKKIKLQDGTSIDFTKIYLATGSS-PRTISQADGVN--KVFYLRTVE-DAN-NIAP------HITPESNVVVI 1211 (1466)
Q Consensus 1143 ~~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~-~~~~~~~~g~~--~v~~~~~~~-~~~-~l~~------~~~~~~~vvVv 1211 (1466)
.. +... +.....||+||+|||+. ++.+++| |.+ ++++..++- .+. .+.. ....+++|+||
T Consensus 217 -~~-~~~~------~~~~~~~d~vvlAtGa~~~~~l~ip-G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVI 287 (471)
T PRK12810 217 -GK-DITA------EELLAEYDAVFLGTGAYKPRDLGIP-GRDLDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVI 287 (471)
T ss_pred -CC-cCCH------HHHHhhCCEEEEecCCCCCCcCCCC-CccCCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEE
Confidence 23 2211 11235799999999996 7888888 876 777643221 111 0111 12358999999
Q ss_pred cCCHHHHHHHHHHhcCCC-eEEEEcCCCcCCcccccH----H-HHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEE
Q psy2951 1212 GSSFIGMEAAAFCASKVK-SVTVVGRGAVPFQESLGK----E-VGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAAN 1285 (1466)
Q Consensus 1212 G~g~~g~e~a~~l~~~g~-~v~vv~~~~~~~~~~~~~----~-~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~ 1285 (1466)
|+|++|+|+|..+.+.|. +|+++++.+.+....... . ......+.+++.||+++++..++++. ++++++..|+
T Consensus 288 GgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~-~~~g~v~~V~ 366 (471)
T PRK12810 288 GGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFE-GENGKVTGVK 366 (471)
T ss_pred CCcHHHHHHHHHHHHcCCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEE-ccCCEEEEEE
Confidence 999999999998888876 799777665443322110 0 01113455778899999999999998 5567776655
Q ss_pred cC-----CC---------CeeecCEEEEeeccccCc-cccccCCceeeCCCeEEeC-CCccccCCCEEEecccccCCCcc
Q psy2951 1286 LD-----NG---------TTIPADLVIVGIGTVLNT-NYLDGKGVELNGQKAVVVN-EYLETNVPGVYAGGDIAYAPLHS 1349 (1466)
Q Consensus 1286 l~-----~g---------~~i~~D~vv~a~G~~p~~-~~~~~~gl~~~~~G~i~vd-~~~~t~~~~v~a~GD~a~~p~~~ 1349 (1466)
+. +| .++++|.||+|+|..|+. .|++..|+.++.+|++.+| ++++|+.|+|||+|||+..+..
T Consensus 367 ~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD~~~g~~~- 445 (471)
T PRK12810 367 VVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNAYQTSNPKVFAAGDMRRGQSL- 445 (471)
T ss_pred EEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhccccCcccCCCCCEEeCCCcccCCCCCEEEccccCCCchh-
Confidence 32 32 478999999999999985 5888889998888899998 7999999999999999875432
Q ss_pred CCCceeeeecHHHHHHHHHHHHHHhcC
Q psy2951 1350 FYNKNASIGHYQLAQYHGRIAALNMVE 1376 (1466)
Q Consensus 1350 ~~~~~~~~~~~~~A~~qa~~aa~~i~g 1376 (1466)
+..|..||+.||.+|..
T Consensus 446 ----------~~~Av~~G~~AA~~i~~ 462 (471)
T PRK12810 446 ----------VVWAIAEGRQAARAIDA 462 (471)
T ss_pred ----------HHHHHHHHHHHHHHHHH
Confidence 36899999999999864
|
|
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-26 Score=296.97 Aligned_cols=322 Identities=21% Similarity=0.276 Sum_probs=220.2
Q ss_pred Ccceeeecc--CcchhhhhhhhhhhcccCccccc-cCCCCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCC--
Q psy2951 5 PCYKVTIQN--DDSVVVQARKDELKNKKRKLPMA-KLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENF-- 79 (1466)
Q Consensus 5 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~-- 79 (1466)
||...++++ ++|+.|..++++......+.... +....+.++|+|||||||||+||..|++.|++++|++..+...
T Consensus 389 ~Ce~~C~~~~~~~pv~I~~ler~~~d~~~~~~~~~~~~~~~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~ 468 (1006)
T PRK12775 389 QCEAQCIIAKKHESVGIGRLERFVGDNARAKPVKPPRFSKKLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGV 468 (1006)
T ss_pred CHHHhCcCCCCCCCeeecHHHHHHHHHHHHcCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcce
Confidence 355544444 78999999999977553222111 1122346799999999999999999999999999987544321
Q ss_pred CCCCCCccchhcccCcccccccChhhhhcCCeEEEeCceEEEeccccccEEEecCCc-EEecCEEEEccCCC-CCCCCCC
Q psy2951 80 LPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGT-SIDFTKIYLATGSS-PRTISQA 157 (1466)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~-~~~~d~lviAtG~~-~~~~~~~ 157 (1466)
+.+..+.. ..+.++..+..+.+++.|++++.++.+. ..+++.+.. ...||+||||||+. |+.++ +
T Consensus 469 l~~gip~~-----rl~~e~~~~~~~~l~~~Gv~~~~~~~vg-------~~~~~~~l~~~~~yDaViIATGa~~pr~l~-I 535 (1006)
T PRK12775 469 LQYGIPSF-----RLPRDIIDREVQRLVDIGVKIETNKVIG-------KTFTVPQLMNDKGFDAVFLGVGAGAPTFLG-I 535 (1006)
T ss_pred eeccCCcc-----CCCHHHHHHHHHHHHHCCCEEEeCCccC-------CccCHHHHhhccCCCEEEEecCCCCCCCCC-C
Confidence 11211111 1234455566777888999999986541 112222111 24699999999995 66554 5
Q ss_pred CCC--CcEEEecCHHHHHhhc---------ccCCCCCcEEEECCCHhHHHHHHHHhhCCC-EEEEEeecCcccccccCHH
Q psy2951 158 DGV--NKVFYLRTVEDANNIA---------PHITPESNVVVIGSSFIGMEAAAFCASKVK-SVTVVGRGAVPFQESLGKE 225 (1466)
Q Consensus 158 ~~~--~~~~~~~~~~~~~~~~---------~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~~~~~~~~~ 225 (1466)
++. .+++....+....++. .....+++|+|||||++|+++|..+.++|. .|+++++......+..
T Consensus 536 pG~~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a~--- 612 (1006)
T PRK12775 536 PGEFAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPAR--- 612 (1006)
T ss_pred CCcCCCCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCcccCCCC---
Confidence 553 3455443333222211 112468999999999999999999999986 5888887543221111
Q ss_pred HHHHHHHHHHhCCcEEEcCceEEEEEecCCCCeEEEEcC-----------------CC--cEEeccEEEEeeccccCccc
Q psy2951 226 VGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLD-----------------NG--TTIPADLVIVGIGTVLNTNY 286 (1466)
Q Consensus 226 ~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~~-----------------~g--~~i~~D~Vi~a~G~~p~~~~ 286 (1466)
... .+.+++.||++++++.+.++..++++++..+.+. ++ .++++|.||+|+|+.|+..+
T Consensus 613 -~~e-~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~ 690 (1006)
T PRK12775 613 -IEE-IRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPII 690 (1006)
T ss_pred -HHH-HHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChhh
Confidence 111 2346778999999999999976545555544321 12 36999999999999999887
Q ss_pred ccc-CCceecCCccEEECC-----CCCcCCCCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCC
Q psy2951 287 LDG-KGVELNGQKAVVVNE-----YLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK 355 (1466)
Q Consensus 287 l~~-~gl~~~~~g~i~vd~-----~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~ 355 (1466)
+.. .+++++.+|.|.+|+ +++|++|+|||+||++..+ .++..|+.+|+.||.+|....
T Consensus 691 ~~~~~gl~l~~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~~G~-----------~~vv~Ai~~Gr~AA~~I~~~L 754 (1006)
T PRK12775 691 TQSTPGLALNKWGNIAADDGKLESTQSTNLPGVFAGGDIVTGG-----------ATVILAMGAGRRAARSIATYL 754 (1006)
T ss_pred hhccCCcccCCCCcEEeCCCccccCcCCCCCCEEEecCcCCCc-----------cHHHHHHHHHHHHHHHHHHHH
Confidence 654 478888889999996 7899999999999998643 356789999999999987543
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.9e-26 Score=274.26 Aligned_cols=319 Identities=20% Similarity=0.273 Sum_probs=216.3
Q ss_pred Ccceeeecc--CcchhhhhhhhhhhcccCcc----ccccCCCCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCC
Q psy2951 5 PCYKVTIQN--DDSVVVQARKDELKNKKRKL----PMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 78 (1466)
Q Consensus 5 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~ 78 (1466)
||...+.++ ++|+.|..++++........ .+++ .+.+.++|+||||||||++||..|++.|++++|++..+..
T Consensus 98 ~Ce~~C~~~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~-~~~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~ 176 (467)
T TIGR01318 98 LCEGACTLNDEFGAVTIGNLERYITDTALAMGWRPDLSH-VVPTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEI 176 (467)
T ss_pred ChHHhCcCCCCCCCccHHHHHHHHHHHHHHhCCCCCCCC-cCCCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 576666655 78999999999887553221 1111 1235679999999999999999999999998776544321
Q ss_pred C--CCCCCCccchhcccCcccccccChhhhhcCCeEEEeCceEEEeccccccEEEecCCcEEecCEEEEccCCCCCCCCC
Q psy2951 79 F--LPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQ 156 (1466)
Q Consensus 79 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~ 156 (1466)
. +.|..+. . ....++..+..+++++.|++++.++.+... +.+.+ ....||.||+|||+.+.....
T Consensus 177 gG~l~~gip~----~-~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-------~~~~~-~~~~~D~vilAtGa~~~~~~~ 243 (467)
T TIGR01318 177 GGLLTFGIPS----F-KLDKAVLSRRREIFTAMGIEFHLNCEVGRD-------ISLDD-LLEDYDAVFLGVGTYRSMRGG 243 (467)
T ss_pred CceeeecCcc----c-cCCHHHHHHHHHHHHHCCCEEECCCEeCCc-------cCHHH-HHhcCCEEEEEeCCCCCCcCC
Confidence 1 1111110 0 112334445567788899999998865321 11111 124699999999998754333
Q ss_pred CCCC--CcEEEecCHHH--H---Hhhc------ccCCCCCcEEEECCCHhHHHHHHHHhhCC-CEEEEEeecCccccccc
Q psy2951 157 ADGV--NKVFYLRTVED--A---NNIA------PHITPESNVVVIGSSFIGMEAAAFCASKV-KSVTVVGRGAVPFQESL 222 (1466)
Q Consensus 157 ~~~~--~~~~~~~~~~~--~---~~~~------~~~~~~~~vvVvGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~~~~~~~ 222 (1466)
+++. ++++....+.. . ..+. .....+++++|||+|++|+++|..+.++| .+||++++.+....+..
T Consensus 244 i~g~~~~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~ 323 (467)
T TIGR01318 244 LPGEDAPGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPGS 323 (467)
T ss_pred CCCcCCCCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCCC
Confidence 4443 34443211110 0 0010 01134789999999999999999999998 47999998754322222
Q ss_pred CHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCCeEEEEc--------------------CCCcEEeccEEEEeecccc
Q psy2951 223 GKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANL--------------------DNGTTIPADLVIVGIGTVL 282 (1466)
Q Consensus 223 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~--------------------~~g~~i~~D~Vi~a~G~~p 282 (1466)
..+ .+.+.+.||++++++.+.++..++++++..+++ ++..++++|.||+|+|+.|
T Consensus 324 ~~e-----~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p 398 (467)
T TIGR01318 324 RRE-----VANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQP 398 (467)
T ss_pred HHH-----HHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCC
Confidence 222 234567899999999999997644455543332 1124799999999999999
Q ss_pred Cc-cccccCCceecCCccEEEC----CCCCcCCCCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcC
Q psy2951 283 NT-NYLDGKGVELNGQKAVVVN----EYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVE 353 (1466)
Q Consensus 283 ~~-~~l~~~gl~~~~~g~i~vd----~~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~ 353 (1466)
+. .+++..+++++++|++.+| ++++|+.|+||++|||+..+ ..+..|+.+|+.||.+|..
T Consensus 399 ~~~~~~~~~gl~~~~~g~i~vd~~~~~~~~T~~~gVfa~GD~~~~~-----------~~~~~Ai~~G~~aA~~i~~ 463 (467)
T TIGR01318 399 HAMPWLAGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAVRGA-----------DLVVTAVAEGRQAAQGILD 463 (467)
T ss_pred CccccccccCccCCCCCCEEeCCccccCccCCCCCEEEECCcCCCc-----------cHHHHHHHHHHHHHHHHHH
Confidence 85 5677778888888999999 67899999999999998643 2456799999999999863
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-26 Score=289.05 Aligned_cols=333 Identities=17% Similarity=0.192 Sum_probs=217.5
Q ss_pred CceEECCCCeeecCCCCCCCCeEEEEEEcCeEEEEEcccchhccccccccc----cccCCCCCCeEEEEcCchHHHHHHH
Q psy2951 537 GACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQARKDELKNKKRKLPM----AKLSSGNKDTFIVVGGGPSGATCVE 612 (1466)
Q Consensus 537 ~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~vvVIGgG~AGl~aA~ 612 (1466)
..-|..-.|++|..||...+..- ..+..+.+...++.+.+......+ ......+.++|+|||+|+||+++|.
T Consensus 225 ~np~~~~~g~vC~~~Ce~~C~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IIGaG~aGl~aA~ 300 (604)
T PRK13984 225 TNPLSMVCGRVCTHKCETVCSIG----HRGEPIAIRWLKRYIVDNVPVEKYSEILDDEPEKKNKKVAIVGSGPAGLSAAY 300 (604)
T ss_pred cCCccchhhCcCCchHHHhhccc----CCCCCeEeCcHHHHHHhHHHHcCcccccCCCcccCCCeEEEECCCHHHHHHHH
Confidence 44455556888888887642221 123444444455444433211111 1223456789999999999999999
Q ss_pred HHHHcCCCccEEEEcCCCCCCCCCCccchhcccCcccccccCHhHhhhCCcEEEEceEEEEeccccccEEEccCCCEEec
Q psy2951 613 TLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDF 692 (1466)
Q Consensus 613 ~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~ 692 (1466)
.|+++|++ |+++++++..++... .........+++..+..+++++.|++++.++.|.. +. ..+ .....|
T Consensus 301 ~L~~~G~~--v~vie~~~~~gG~~~-~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~--~~-----~~~-~~~~~y 369 (604)
T PRK13984 301 FLATMGYE--VTVYESLSKPGGVMR-YGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGK--DI-----PLE-ELREKH 369 (604)
T ss_pred HHHHCCCe--EEEEecCCCCCceEe-ecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCC--cC-----CHH-HHHhcC
Confidence 99999987 778877765432211 10000112334445556778889999999986632 11 111 113579
Q ss_pred CEEEEcCCCC-CCcCCCCCCCC--cEEEecCHHHHHhhccc-------CCCCCcEEEECCChHHHHHHHHHhccC-----
Q psy2951 693 TKIYLATGSS-PRTISQADGVN--KVFYLRTVEDANNIAPH-------ITPESNVVVIGSSFIGMEAAAFCASKV----- 757 (1466)
Q Consensus 693 d~lviAtG~~-~~~~~~~~g~~--~~~~~~~~~~~~~~~~~-------~~~~~~vvVvG~G~~g~e~A~~l~~~g----- 757 (1466)
|+||||||+. ++.++++ |.+ +++. ..+....+... ...+++|+|||||++|+|+|..+++++
T Consensus 370 D~vilAtGa~~~r~l~i~-G~~~~gv~~--a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g 446 (604)
T PRK13984 370 DAVFLSTGFTLGRSTRIP-GTDHPDVIQ--ALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYG 446 (604)
T ss_pred CEEEEEcCcCCCccCCCC-CcCCcCeEe--HHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccC
Confidence 9999999986 6888888 866 4443 33333322211 123799999999999999999998875
Q ss_pred -CeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECC-------------------C
Q psy2951 758 -KSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLD-------------------N 817 (1466)
Q Consensus 758 -~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~-------------------~ 817 (1466)
.+|+++...... ..++.... .+.+ +.+.||+++++..++++. .+++++..+.+. +
T Consensus 447 ~~~V~v~~~~r~~--~~~~~~~~-e~~~-~~~~GV~i~~~~~~~~i~-~~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~ 521 (604)
T PRK13984 447 EVNVKVTSLERTF--EEMPADME-EIEE-GLEEGVVIYPGWGPMEVV-IENDKVKGVKFKKCVEVFDEEGRFNPKFDESD 521 (604)
T ss_pred ceEEEEeccccCc--ccCCCCHH-HHHH-HHHcCCEEEeCCCCEEEE-ccCCEEEEEEEEEEeeccCCCCCccceecCCc
Confidence 378887533111 11222221 2222 346899999999898886 344555444331 2
Q ss_pred CcEEecCEEEEccccccCcccccc---CCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHH
Q psy2951 818 GTTIPADLVIVGIGTVLNTNYLDG---KGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQY 894 (1466)
Q Consensus 818 g~~i~~D~vi~a~G~~p~~~~~~~---~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~ 894 (1466)
+.++++|.||+|+|++|+++++.. .+++. ++|+|.||++++|++|+|||+|||+..+.. ..|+.
T Consensus 522 ~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~-~~G~i~vd~~~~Ts~~gVfAaGD~~~~~~~------------v~Ai~ 588 (604)
T PRK13984 522 QIIVEADMVVEAIGQAPDYSYLPEELKSKLEF-VRGRILTNEYGQTSIPWLFAGGDIVHGPDI------------IHGVA 588 (604)
T ss_pred eEEEECCEEEEeeCCCCChhhhhhhhccCccc-cCCeEEeCCCCccCCCCEEEecCcCCchHH------------HHHHH
Confidence 247999999999999999887643 23554 468899999999999999999999976542 47999
Q ss_pred HHHHHHHHhcc
Q psy2951 895 HGRIAALNMVE 905 (1466)
Q Consensus 895 ~g~~aA~~i~~ 905 (1466)
+|+.||.+|..
T Consensus 589 ~G~~AA~~I~~ 599 (604)
T PRK13984 589 DGYWAAEGIDM 599 (604)
T ss_pred HHHHHHHHHHH
Confidence 99999999853
|
|
| >COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-27 Score=246.23 Aligned_cols=291 Identities=24% Similarity=0.326 Sum_probs=218.1
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcc---cCcccccccCHhHhhhCCcEEEEc
Q psy2951 592 SGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD---IKADSILLRTEEFYKDNDIHVIKG 668 (1466)
Q Consensus 592 ~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~gv~~~~~ 668 (1466)
....+||+||||||||-+||.+.+|.|.+.-+ +.|+-..-....+....... .....+...+.+..+++.|++...
T Consensus 208 ~k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl-~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~ 286 (520)
T COG3634 208 AKDAYDVLVVGGGPAGAAAAIYAARKGIRTGL-VAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNL 286 (520)
T ss_pred ccCCceEEEEcCCcchhHHHHHHHhhcchhhh-hhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhh
Confidence 34569999999999999999999999987332 22221111112222222222 334456666777788889988777
Q ss_pred eEEEEecc----ccccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCCh
Q psy2951 669 KKIISDSE----LNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSF 744 (1466)
Q Consensus 669 ~~v~~i~~----~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~ 744 (1466)
.+++.+.. .+...|++++|..+..+.+|||||++++...+| |.+ -+.-+.+..+..|...+.++|+|+|||||+
T Consensus 287 qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~nvP-GE~-e~rnKGVayCPHCDGPLF~gK~VAVIGGGN 364 (520)
T COG3634 287 QRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNMNVP-GED-EYRNKGVAYCPHCDGPLFKGKRVAVIGGGN 364 (520)
T ss_pred hhhhcceecCCCCccEEEEecCCceeccceEEEecCcchhcCCCC-chH-HHhhCCeeeCCCCCCcccCCceEEEECCCc
Confidence 66666622 235678999999999999999999999999999 876 122233344556777888899999999999
Q ss_pred HHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHh-cCcEEEccceEEEEEecCCCceEEEECCC---Cc-
Q psy2951 745 IGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFES-KGVKFVMKANVSSFEKNEKNDVTAANLDN---GT- 819 (1466)
Q Consensus 745 ~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~-~gv~~~~~~~v~~i~~~~~~~~~~v~~~~---g~- 819 (1466)
+|+|.|..|+-.-..||+++-.+.+- ..+.+++.|.+ .+|+++++.+-++|. ++..++..+...+ |+
T Consensus 365 SGvEAAIDLAGiv~hVtllEF~~eLk-------AD~VLq~kl~sl~Nv~ii~na~Ttei~-Gdg~kV~Gl~Y~dr~sge~ 436 (520)
T COG3634 365 SGVEAAIDLAGIVEHVTLLEFAPELK-------ADAVLQDKLRSLPNVTIITNAQTTEVK-GDGDKVTGLEYRDRVSGEE 436 (520)
T ss_pred chHHHHHhHHhhhheeeeeecchhhh-------hHHHHHHHHhcCCCcEEEecceeeEEe-cCCceecceEEEeccCCce
Confidence 99999999999999999997765432 23455666554 589999999999998 4445665555433 33
Q ss_pred -EEecCEEEEccccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHH
Q psy2951 820 -TIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRI 898 (1466)
Q Consensus 820 -~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~ 898 (1466)
.++-+-|++-+|..||++|++.. +++++.|-|.+|....||.|+|||+|||...|.... ..|+.+|..
T Consensus 437 ~~l~LeGvFVqIGL~PNT~WLkg~-vel~~rGEIivD~~g~TsvpGvFAAGD~T~~~yKQI----------IIamG~GA~ 505 (520)
T COG3634 437 HHLELEGVFVQIGLLPNTEWLKGA-VELNRRGEIIVDARGETNVPGVFAAGDCTTVPYKQI----------IIAMGEGAK 505 (520)
T ss_pred eEEEeeeeEEEEecccChhHhhch-hhcCcCccEEEecCCCcCCCceeecCcccCCccceE----------EEEecCcch
Confidence 57788999999999999999987 899999999999999999999999999999887541 246666666
Q ss_pred HHHHhc
Q psy2951 899 AALNMV 904 (1466)
Q Consensus 899 aA~~i~ 904 (1466)
|+...+
T Consensus 506 AaL~AF 511 (520)
T COG3634 506 ASLSAF 511 (520)
T ss_pred hhhhhh
Confidence 666554
|
|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.8e-26 Score=283.66 Aligned_cols=281 Identities=22% Similarity=0.257 Sum_probs=199.0
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCC-CchhhccCcccccccChhhhccCCcEEEcCCeEE
Q psy2951 1065 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK-LSKQLDIKADSILLRTEEFYKDNDIHVIKGKKII 1143 (1466)
Q Consensus 1065 ~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 1143 (1466)
..++|+|||||+||++||..|++.|+ +|+|||+++.++..... ++.. ..+..+.....+.+.+.|+++++++. .
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~--~Vtv~e~~~~~GG~l~~gip~~--~~~~~~~~~~~~~l~~~Gv~i~~~~~-v 266 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGH--DVTIFDANEQAGGMMRYGIPRF--RLPESVIDADIAPLRAMGAEFRFNTV-F 266 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC--cEEEEecCCCCCceeeecCCCC--CCCHHHHHHHHHHHHHcCCEEEeCCc-c
Confidence 45789999999999999999999998 99999998765321110 0000 01111222223456677999998883 3
Q ss_pred EeecCCCCeEEecCCcEEecCeEEEecCCCC-CcCCCCCCCC--cEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHH
Q psy2951 1144 SDSELNEKKIKLQDGTSIDFTKIYLATGSSP-RTISQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEA 1220 (1466)
Q Consensus 1144 ~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~~-~~~~~~~g~~--~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~ 1220 (1466)
.+ + +.+++. ...||+||+|||+.+ +.+++| |.+ +++...++-...........+++|+|||+|++|+|+
T Consensus 267 ~~-d-----v~~~~~-~~~~DaVilAtGa~~~~~~~ip-G~~~~gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~ 338 (652)
T PRK12814 267 GR-D-----ITLEEL-QKEFDAVLLAVGAQKASKMGIP-GEELPGVISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDA 338 (652)
T ss_pred cC-c-----cCHHHH-HhhcCEEEEEcCCCCCCCCCCC-CcCcCCcEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHH
Confidence 33 2 222222 235999999999975 567788 766 555432222211122234568999999999999999
Q ss_pred HHHHhcCCC-eEEEEcCCCc-CCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcE--EEEEcC---------
Q psy2951 1221 AAFCASKVK-SVTVVGRGAV-PFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDV--TAANLD--------- 1287 (1466)
Q Consensus 1221 a~~l~~~g~-~v~vv~~~~~-~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~--~~v~l~--------- 1287 (1466)
|..+.+.|. +|+++++... .|+ ....+ +.+. .+.||+|+++..+.++. .+++.+ ..+.+.
T Consensus 339 A~~l~~~Ga~~Vtlv~r~~~~~mp-a~~~e----i~~a-~~eGV~i~~~~~~~~i~-~~~~~~~v~~~~~~~~~~d~~G~ 411 (652)
T PRK12814 339 ARTALRLGAESVTILYRRTREEMP-ANRAE----IEEA-LAEGVSLRELAAPVSIE-RSEGGLELTAIKMQQGEPDESGR 411 (652)
T ss_pred HHHHHHcCCCeEEEeeecCcccCC-CCHHH----HHHH-HHcCCcEEeccCcEEEE-ecCCeEEEEEEEEEecccCCCCC
Confidence 999999986 6999998764 232 22222 2222 36799999999999987 334332 222221
Q ss_pred ------CCC--eeecCEEEEeeccccCccccccCCceeeCCCeEEeCC-CccccCCCEEEecccccCCCccCCCceeeee
Q psy2951 1288 ------NGT--TIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNE-YLETNVPGVYAGGDIAYAPLHSFYNKNASIG 1358 (1466)
Q Consensus 1288 ------~g~--~i~~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~-~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~ 1358 (1466)
+|+ ++++|.||+++|..|++++++..|+.++.+|+|.||+ +++|+.|+|||+||++..|..
T Consensus 412 ~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ll~~~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~~g~~~---------- 481 (652)
T PRK12814 412 RRPVPVEGSEFTLQADTVISAIGQQVDPPIAEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDCVTGADI---------- 481 (652)
T ss_pred CcceecCCceEEEECCEEEECCCCcCCcccccccCccccCCCcEeeCCCCCcCCCCCEEEcCCcCCCchH----------
Confidence 222 5899999999999999999998999998889999996 689999999999999876543
Q ss_pred cHHHHHHHHHHHHHHhcC
Q psy2951 1359 HYQLAQYHGRIAALNMVE 1376 (1466)
Q Consensus 1359 ~~~~A~~qa~~aa~~i~g 1376 (1466)
+..|+.||+.||.+|..
T Consensus 482 -v~~Ai~~G~~AA~~I~~ 498 (652)
T PRK12814 482 -AINAVEQGKRAAHAIDL 498 (652)
T ss_pred -HHHHHHHHHHHHHHHHH
Confidence 37899999999999873
|
|
| >COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=266.40 Aligned_cols=329 Identities=29% Similarity=0.376 Sum_probs=270.0
Q ss_pred EEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcc---cCcccccccCHhHhhhCCcEEEEceEEEEe
Q psy2951 598 FIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD---IKADSILLRTEEFYKDNDIHVIKGKKIISD 674 (1466)
Q Consensus 598 vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i 674 (1466)
++|||+|+||+++|..|++......++++..+...+|..+.+..... ...+.+..... ...+.++++..+++|..+
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~v~~i 79 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPR-FNRATGIDVRTGTEVTSI 79 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccch-hHHhhCCEEeeCCEEEEe
Confidence 58999999999999999999888889888888877887777766554 22233333333 234669999999999999
Q ss_pred ccccccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHh
Q psy2951 675 SELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCA 754 (1466)
Q Consensus 675 ~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~ 754 (1466)
|...+.+.+.++ ++.||++++|||++|..++.. ....++..+...+...+.......++++|+|+|.+|+|+|..++
T Consensus 80 -d~~~~~v~~~~g-~~~yd~LvlatGa~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~gle~A~~~~ 156 (415)
T COG0446 80 -DPENKVVLLDDG-EIEYDYLVLATGARPRPPPIS-DWEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAA 156 (415)
T ss_pred -cCCCCEEEECCC-cccccEEEEcCCCcccCCCcc-ccCceEEECCHHHHHHHHHHHhccCeEEEECCcHHHHHHHHHHH
Confidence 999999999888 899999999999999988722 44478899999999888776655789999999999999999999
Q ss_pred ccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEE--EECCCCcEEecCEEEEcccc
Q psy2951 755 SKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTA--ANLDNGTTIPADLVIVGIGT 832 (1466)
Q Consensus 755 ~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~--v~~~~g~~i~~D~vi~a~G~ 832 (1466)
++|++|++++..++++...+.+++.+.+.+.++++||+++++..+.+|+...+ .... +...++..+++|.+++++|.
T Consensus 157 ~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~g~ 235 (415)
T COG0446 157 KRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGN-TLVVERVVGIDGEEIKADLVIIGPGE 235 (415)
T ss_pred HcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccC-cceeeEEEEeCCcEEEeeEEEEeecc
Confidence 99999999999998874322278899999999999999999999999994433 2222 57778889999999999999
Q ss_pred ccCccccccCCc-eeeCCCcEEeCCCCCCC-CCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCCcC
Q psy2951 833 VLNTNYLDGKGV-ELNGQKAVVVNEYLETN-VPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSL 910 (1466)
Q Consensus 833 ~p~~~~~~~~gl-~~~~~G~i~vd~~~~t~-~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~~~ 910 (1466)
+|+..+.++.+. ....+|++.||+.++|+ .++|||+|||+..+... ++.....++++.|..+++.++.++.+. ..+
T Consensus 236 ~p~~~l~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~~~-~~~~~~~~~~~~a~~~~~i~~~~~~~~-~~~ 313 (415)
T COG0446 236 RPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAE-TGKGGRIALWAIAVAAGRIAAENIAGA-LRI 313 (415)
T ss_pred cccHHHHhhCccceeccCCCEEEccccccCCCCCEEeccceEeeeccc-CCceeeeechhhHhhhhHHHHHHhccc-ccc
Confidence 999777777652 45667899999999998 99999999999987765 245566889999999999999999877 443
Q ss_pred -cccCeeeeeecCceeEEeeccCC
Q psy2951 911 -STIPFFWTMLFGVGFRFAGYAAG 933 (1466)
Q Consensus 911 -~~~~~~~~~~~~~~~~~~g~~~~ 933 (1466)
..++.++...++......|....
T Consensus 314 ~~~~~~~~~~~~~~~~~~~g~~~~ 337 (415)
T COG0446 314 PGLLGTVISDVGDLCAASTGLTEG 337 (415)
T ss_pred ccccCceEEEEcCeEEEEecCCcc
Confidence 56666777777777777776653
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-25 Score=281.37 Aligned_cols=320 Identities=19% Similarity=0.275 Sum_probs=215.0
Q ss_pred Ccceeeecc--CcchhhhhhhhhhhcccCccccc---cCCCCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCC-
Q psy2951 5 PCYKVTIQN--DDSVVVQARKDELKNKKRKLPMA---KLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN- 78 (1466)
Q Consensus 5 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~- 78 (1466)
||...+.++ ++|+.|..++++..+........ .....+.++|+|||||||||+||..|++.|++++|++..+..
T Consensus 284 ~Ce~~C~~~~~~~~v~I~~l~r~~~d~~~~~~~~~~~~~~~~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~G 363 (654)
T PRK12769 284 LCEGACTLRDEYGAVTIGNIERYISDQALAKGWRPDLSQVTKSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIG 363 (654)
T ss_pred ChHHhccCCCCCCCeecCHHHHHHHHHHHHhCCCCCCcccccCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 465555544 78999999999887654322111 111234679999999999999999999999998887654321
Q ss_pred -CCCCCCCccchhcccCcccccccChhhhhcCCeEEEeCceEEEeccccccEEEecCCcEEecCEEEEccCCCCCCCCCC
Q psy2951 79 -FLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQA 157 (1466)
Q Consensus 79 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~ 157 (1466)
.+.|..+.. ....++..+..+++++.|++++.++.+..+. .+.+ ....||.|++|||+.......+
T Consensus 364 G~l~~gip~~-----~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~i-------~~~~-~~~~~DavilAtGa~~~~~l~i 430 (654)
T PRK12769 364 GLLTFGIPAF-----KLDKSLLARRREIFSAMGIEFELNCEVGKDI-------SLES-LLEDYDAVFVGVGTYRSMKAGL 430 (654)
T ss_pred ceeeecCCCc-----cCCHHHHHHHHHHHHHCCeEEECCCEeCCcC-------CHHH-HHhcCCEEEEeCCCCCCCCCCC
Confidence 111111110 1122334445567778899999888653211 1111 1136999999999865432234
Q ss_pred CCC--CcEEEecC-----HHHHHhhcc------cCCCCCcEEEECCCHhHHHHHHHHhhCCC-EEEEEeecCcccccccC
Q psy2951 158 DGV--NKVFYLRT-----VEDANNIAP------HITPESNVVVIGSSFIGMEAAAFCASKVK-SVTVVGRGAVPFQESLG 223 (1466)
Q Consensus 158 ~~~--~~~~~~~~-----~~~~~~~~~------~~~~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~~~~~~~ 223 (1466)
++. .+++.... ......+.. ....+++|+|||||++|+|+|..+.+.|. +|+++++.+....+..+
T Consensus 431 ~g~~~~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~ 510 (654)
T PRK12769 431 PNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSK 510 (654)
T ss_pred CCCCCCCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCCH
Confidence 432 33432110 011111110 01357899999999999999998888885 79999986543222222
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCCeEEEEc---------CCC-----------cEEeccEEEEeeccccC
Q psy2951 224 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANL---------DNG-----------TTIPADLVIVGIGTVLN 283 (1466)
Q Consensus 224 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~---------~~g-----------~~i~~D~Vi~a~G~~p~ 283 (1466)
. ..+.+++.||++++++.++++..++++++..+++ .+| .++++|.||+|+|+.|+
T Consensus 511 ~-----e~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~ 585 (654)
T PRK12769 511 K-----EVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPH 585 (654)
T ss_pred H-----HHHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCC
Confidence 2 2345678899999999999997544455544432 112 26999999999999998
Q ss_pred c-cccccCCceecCCccEEECC----CCCcCCCCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcC
Q psy2951 284 T-NYLDGKGVELNGQKAVVVNE----YLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVE 353 (1466)
Q Consensus 284 ~-~~l~~~gl~~~~~g~i~vd~----~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~ 353 (1466)
. .+++..+++++.+|.|.+|+ +++|+.|+|||+||++..+ ..+..|+.+|+.||.+|..
T Consensus 586 ~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~~g~-----------~~vv~Ai~~Gr~AA~~I~~ 649 (654)
T PRK12769 586 GMPWLESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGA-----------DLVVTAMAEGRHAAQGIID 649 (654)
T ss_pred ccccccccCCcCCCCCCEEeCCCcccCcccCCCCEEEcCCcCCCC-----------cHHHHHHHHHHHHHHHHHH
Confidence 5 57788889999999999986 4899999999999998654 2456899999999999864
|
|
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.6e-25 Score=260.07 Aligned_cols=293 Identities=19% Similarity=0.261 Sum_probs=198.7
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHH--cCCCccEEEEcCCCCCCCCCCccchhcc-cCcccccccCHhHhhhCCcEEEEc
Q psy2951 592 SGNKDTFIVVGGGPSGATCVETLRQ--NGFTGKLYFITDENFLPYDRVKLSKQLD-IKADSILLRTEEFYKDNDIHVIKG 668 (1466)
Q Consensus 592 ~~~~~~vvVIGgG~AGl~aA~~l~~--~g~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~~~~~ 668 (1466)
...+++|+|||||||||+||+.|++ .|++ |+++|+.+.+ |.......... .....+...+...+...+++++.+
T Consensus 23 ~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~--Vtv~E~~p~p-gGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~n 99 (491)
T PLN02852 23 TSEPLHVCVVGSGPAGFYTADKLLKAHDGAR--VDIIERLPTP-FGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGN 99 (491)
T ss_pred CCCCCcEEEECccHHHHHHHHHHHhhCCCCe--EEEEecCCCC-cceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcC
Confidence 4457899999999999999999997 5666 8888888753 33333221111 222334445556677788998887
Q ss_pred eEEEEeccccccEEEccCCCEEecCEEEEcCCCCC-CcCCCCCCCC--cEEEecCHHH-------HHhhcccCCCCCcEE
Q psy2951 669 KKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSP-RTISQADGVN--KVFYLRTVED-------ANNIAPHITPESNVV 738 (1466)
Q Consensus 669 ~~v~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~-~~~~~~~g~~--~~~~~~~~~~-------~~~~~~~~~~~~~vv 738 (1466)
..+.. .+++++. ...||+||||||+.+ +.+++| |.+ +++...++.. ...+...+..+++|+
T Consensus 100 v~vg~-------dvtl~~L-~~~yDaVIlAtGa~~~~~l~Ip-G~d~~gV~~a~~fl~~~ng~~d~~~~~~~~~~gk~Vv 170 (491)
T PLN02852 100 VTLGR-------DVSLSEL-RDLYHVVVLAYGAESDRRLGIP-GEDLPGVLSAREFVWWYNGHPDCVHLPPDLKSSDTAV 170 (491)
T ss_pred EEECc-------cccHHHH-hhhCCEEEEecCCCCCCCCCCC-CCCCCCeEEHHHHHHHhhcchhhhhhhhcccCCCEEE
Confidence 75521 2333332 247999999999985 678888 866 6665544321 111111233589999
Q ss_pred EECCChHHHHHHHHHhcc--------------------C-CeEEEEeecCccCccccCHHHH------------------
Q psy2951 739 VIGSSFIGMEAAAFCASK--------------------V-KSVTVVGRGAVPFQESLGKEVG------------------ 779 (1466)
Q Consensus 739 VvG~G~~g~e~A~~l~~~--------------------g-~~V~lv~~~~~~~~~~~~~~~~------------------ 779 (1466)
|||+|++|+|+|..|.+. + .+|++++|+...-...-.+++.
T Consensus 171 VIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l~~~~~~~~~~~~~ 250 (491)
T PLN02852 171 VLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKNVRVRIKEADLT 250 (491)
T ss_pred EECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhccCCCceeechhhhc
Confidence 999999999999998764 4 5799999987321111112221
Q ss_pred -------------------HHHHHHHHh---------cCcEEEccceEEEEEec--CCCceEEEECC-------------
Q psy2951 780 -------------------ERITKLFES---------KGVKFVMKANVSSFEKN--EKNDVTAANLD------------- 816 (1466)
Q Consensus 780 -------------------~~~~~~l~~---------~gv~~~~~~~v~~i~~~--~~~~~~~v~~~------------- 816 (1466)
+.+.+...+ ++|.|++...+++|..+ +++++..+++.
T Consensus 251 ~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~ 330 (491)
T PLN02852 251 LSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQ 330 (491)
T ss_pred cccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCc
Confidence 122222222 58999999999999732 22456555442
Q ss_pred ----CCc--EEecCEEEEccccc--cCccc--cccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeee
Q psy2951 817 ----NGT--TIPADLVIVGIGTV--LNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASI 886 (1466)
Q Consensus 817 ----~g~--~i~~D~vi~a~G~~--p~~~~--~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~ 886 (1466)
+|+ +|+||.||.++|++ |...+ -...++..+.+|+|.+|+.++|+.|+|||+|||...|...
T Consensus 331 ~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv~~n~~G~V~~d~~~~T~ipGvyAaGDi~~Gp~gv-------- 402 (491)
T PLN02852 331 VAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDHKRGVVPNVHGRVLSSASGADTEPGLYVVGWLKRGPTGI-------- 402 (491)
T ss_pred ccCCCCCEEEEECCEEEEeecCCCCCCCCCccccCcCeeECCCceEEeCCCCccCCCCEEEeeeEecCCCCe--------
Confidence 122 68999999999998 55553 3444677788899999988899999999999999877632
Q ss_pred ccHHHHHHHHHHHHHHhccC
Q psy2951 887 GHYQLAQYHGRIAALNMVEK 906 (1466)
Q Consensus 887 ~~~~~A~~~g~~aA~~i~~~ 906 (1466)
...++.+|+.+|.+|+..
T Consensus 403 --I~t~~~dA~~ta~~i~~d 420 (491)
T PLN02852 403 --IGTNLTCAEETVASIAED 420 (491)
T ss_pred --eeecHhhHHHHHHHHHHH
Confidence 236888889999888743
|
|
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.2e-25 Score=267.54 Aligned_cols=285 Identities=22% Similarity=0.287 Sum_probs=200.8
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCC----CCCCCCchhhccCcccccccChhhhccCCcEEEcCC
Q psy2951 1065 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP----YDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGK 1140 (1466)
Q Consensus 1065 ~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 1140 (1466)
..++|+|||||+||+++|..|++.|+ +|+|||+++.++ |..|.. . ....+..+..+++++.|++++.++
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~--~V~v~e~~~~~gG~l~~gip~~----~-~~~~~~~~~~~~~~~~Gv~~~~~~ 214 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGH--TVTVFEREDRCGGLLMYGIPNM----K-LDKAIVDRRIDLLSAEGIDFVTNT 214 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCC--eEEEEecCCCCCceeeccCCCc----c-CCHHHHHHHHHHHHhCCCEEECCC
Confidence 34799999999999999999999998 999999988643 222211 0 011122233467788899999998
Q ss_pred eEEEeecCCCCeEEecCCcEEecCeEEEecCCC-CCcCCCCCCCC--cEEEec-CHHHHHhh---------hcccCCCCe
Q psy2951 1141 KIISDSELNEKKIKLQDGTSIDFTKIYLATGSS-PRTISQADGVN--KVFYLR-TVEDANNI---------APHITPESN 1207 (1466)
Q Consensus 1141 ~v~~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~-~~~~~~~~g~~--~v~~~~-~~~~~~~l---------~~~~~~~~~ 1207 (1466)
.+. . +... +.....||+|++|||+. |+.++++ |.+ +|++.. .+.++... ......+|+
T Consensus 215 ~v~-~-~~~~------~~~~~~~d~VilAtGa~~~~~l~i~-G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~ 285 (485)
T TIGR01317 215 EIG-V-DISA------DELKEQFDAVVLAGGATKPRDLPIP-GRELKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKK 285 (485)
T ss_pred EeC-C-ccCH------HHHHhhCCEEEEccCCCCCCcCCCC-CcCCCCcEeHHHHHHHHhhhhccccccccccccCCCCE
Confidence 653 2 2111 11235799999999997 8999999 876 777643 22332211 111235899
Q ss_pred EEEEcCCHHHHHHHHHHhcCC-CeEEEEcCCCcCCccccc--------H--HHHHHHHHHHHhCCcEE-EcCceEEEEEe
Q psy2951 1208 VVVIGSSFIGMEAAAFCASKV-KSVTVVGRGAVPFQESLG--------K--EVGERITKLFESKGVKF-VMKANVSSFEK 1275 (1466)
Q Consensus 1208 vvVvG~g~~g~e~a~~l~~~g-~~v~vv~~~~~~~~~~~~--------~--~~~~~l~~~~~~~gv~~-~~~~~v~~i~~ 1275 (1466)
|+|||+|++|+|+|..+.+.| .+|+++++.+..+..... . +....+.+..+..||.+ +++..+.++..
T Consensus 286 VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~ 365 (485)
T TIGR01317 286 VVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIG 365 (485)
T ss_pred EEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEE
Confidence 999999999999988777776 579999987765432111 0 12223444444567654 46777888872
Q ss_pred cCCCcEEEEEc--------CCCC-----------eeecCEEEEeeccc-cCccccccCCceeeCCCeEEe-CCCccccCC
Q psy2951 1276 NEKNDVTAANL--------DNGT-----------TIPADLVIVGIGTV-LNTNYLDGKGVELNGQKAVVV-NEYLETNVP 1334 (1466)
Q Consensus 1276 ~~~g~~~~v~l--------~~g~-----------~i~~D~vv~a~G~~-p~~~~~~~~gl~~~~~G~i~v-d~~~~t~~~ 1334 (1466)
.+++++..+++ ++|. ++++|.||+|+|.. |++++++..|+.++.+|++.+ |++++|+.|
T Consensus 366 ~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~gl~~~~~G~i~~~~~~~~Ts~~ 445 (485)
T TIGR01317 366 DDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGVKKTRRGNISAGYDDYSTSIP 445 (485)
T ss_pred cCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCccccccccCcccCCCCCEEecCCCceECCC
Confidence 22356666653 1342 69999999999985 888999989998887888854 588999999
Q ss_pred CEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcC
Q psy2951 1335 GVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVE 1376 (1466)
Q Consensus 1335 ~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g 1376 (1466)
+|||+|||+..+... ..|..||+.||.+|..
T Consensus 446 gVfAaGD~~~g~~~~-----------~~Av~~G~~AA~~i~~ 476 (485)
T TIGR01317 446 GVFAAGDCRRGQSLI-----------VWAINEGRKAAAAVDR 476 (485)
T ss_pred CEEEeeccCCCcHHH-----------HHHHHHHHHHHHHHHH
Confidence 999999998755432 5799999999999864
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >KOG2495|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=8e-25 Score=237.52 Aligned_cols=294 Identities=21% Similarity=0.315 Sum_probs=219.7
Q ss_pred CCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhc-cCcccccccChhhhcc--CCcEEEcC
Q psy2951 1063 SGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD-IKADSILLRTEEFYKD--NDIHVIKG 1139 (1466)
Q Consensus 1063 ~~~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~--~~v~~~~~ 1139 (1466)
...+++|||+|+|.+|.+.+..|-..-| +|++|+..+|.-|-+..-|-... .....+..+-...... .+++++..
T Consensus 52 ~~kKk~vVVLGsGW~a~S~lk~ldts~Y--dV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~eA 129 (491)
T KOG2495|consen 52 GGKKKRVVVLGSGWGAISLLKKLDTSLY--DVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLEA 129 (491)
T ss_pred CCCCceEEEEcCchHHHHHHHhcccccc--ceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEec
Confidence 3456899999999999999999999989 99999888876654322222221 1111111111112222 25565544
Q ss_pred CeEEEeecCCCCeEEec----CC----cEEecCeEEEecCCCCCcCCCCCCCC-cEEEecCHHHHHhhhcccC-------
Q psy2951 1140 KKIISDSELNEKKIKLQ----DG----TSIDFTKIYLATGSSPRTISQADGVN-KVFYLRTVEDANNIAPHIT------- 1203 (1466)
Q Consensus 1140 ~~v~~i~d~~~~~v~~~----~g----~~~~yd~lvlAtG~~~~~~~~~~g~~-~v~~~~~~~~~~~l~~~~~------- 1203 (1466)
+.+.| |++++.|.+. ++ ..+.||+||+|+|+++..+.+| |.. +.+.++..+||+++|..+-
T Consensus 130 -ec~~i-Dp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgip-GV~e~~~FLKEv~dAqeIR~~~~~~le~a~ 206 (491)
T KOG2495|consen 130 -ECTKI-DPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGIP-GVEENAHFLKEVEDAQEIRRKVIDNLEKAE 206 (491)
T ss_pred -ccEee-cccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCCCCC-chhhchhhhhhhhHHHHHHHHHHHHHHHhh
Confidence 48899 9999988764 44 4688999999999999999999 877 7888999999999865421
Q ss_pred ----------CCCeEEEEcCCHHHHHHHHHHhcC--------------CCeEEEEcCCCcCCcccccHHHHHHHHHHHHh
Q psy2951 1204 ----------PESNVVVIGSSFIGMEAAAFCASK--------------VKSVTVVGRGAVPFQESLGKEVGERITKLFES 1259 (1466)
Q Consensus 1204 ----------~~~~vvVvG~g~~g~e~a~~l~~~--------------g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~ 1259 (1466)
.--++||||||++|+|.|..|... ..+||+++..+..+. .++..+.++..+++.+
T Consensus 207 ~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~-mFdkrl~~yae~~f~~ 285 (491)
T KOG2495|consen 207 LPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILN-MFDKRLVEYAENQFVR 285 (491)
T ss_pred cCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHH-HHHHHHHHHHHHHhhh
Confidence 123699999999999999977543 358999999987775 7889999999999999
Q ss_pred CCcEEEcCceEEEEEecCCCcEEEEEcCCC--CeeecCEEEEeeccccCccccccCCceeeCCC--eEEeCCCcccc-CC
Q psy2951 1260 KGVKFVMKANVSSFEKNEKNDVTAANLDNG--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQK--AVVVNEYLETN-VP 1334 (1466)
Q Consensus 1260 ~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g--~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~~G--~i~vd~~~~t~-~~ 1334 (1466)
.||++.+++.|..++ .+ -..+...|| ++|++-++|+++|..|. ++.+...-++++.| ++.+|++||.. .+
T Consensus 286 ~~I~~~~~t~Vk~V~-~~---~I~~~~~~g~~~~iPYG~lVWatG~~~r-p~~k~lm~~i~e~~rr~L~vDE~LrV~G~~ 360 (491)
T KOG2495|consen 286 DGIDLDTGTMVKKVT-EK---TIHAKTKDGEIEEIPYGLLVWATGNGPR-PVIKDLMKQIDEQGRRGLAVDEWLRVKGVK 360 (491)
T ss_pred ccceeecccEEEeec-Cc---EEEEEcCCCceeeecceEEEecCCCCCc-hhhhhHhhcCCccCceeeeeeceeeccCcC
Confidence 999999999999987 22 233444566 68999999999998887 44443333344444 79999999986 89
Q ss_pred CEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhc
Q psy2951 1335 GVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMV 1375 (1466)
Q Consensus 1335 ~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~ 1375 (1466)
||||+|||+..+... ++-+.|.+||..+|+++-
T Consensus 361 nvfAiGDca~~~~~~--------~tAQVA~QqG~yLAk~fn 393 (491)
T KOG2495|consen 361 NVFAIGDCADQRGLK--------PTAQVAEQQGAYLAKNFN 393 (491)
T ss_pred ceEEeccccccccCc--------cHHHHHHHHHHHHHHHHH
Confidence 999999999555432 234899999999999875
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-24 Score=272.23 Aligned_cols=320 Identities=19% Similarity=0.263 Sum_probs=215.0
Q ss_pred Ccceeeecc--CcchhhhhhhhhhhcccCccc---cccCCCCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCC-
Q psy2951 5 PCYKVTIQN--DDSVVVQARKDELKNKKRKLP---MAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN- 78 (1466)
Q Consensus 5 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~- 78 (1466)
||...++++ ++|+.|..++++..+...+.. .......+.++|+|||||||||++|..|++.|++++|++..+..
T Consensus 267 ~Ce~~C~~~~~~~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~G 346 (639)
T PRK12809 267 LCEGACTLKDHSGAVSIGNLERYITDTALAMGWRPDVSKVVPRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIG 346 (639)
T ss_pred ChHHhccCCCcCCCcChhHHHHHHHHHHHHhCCCCCCCcccCCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence 466555544 789999999998886543222 11112234688999999999999999999999998887654431
Q ss_pred -CCCCCCCccchhcccCcccccccChhhhhcCCeEEEeCceEEEeccccccEEEecCCcEEecCEEEEccCCCCCCCCCC
Q psy2951 79 -FLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQA 157 (1466)
Q Consensus 79 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~ 157 (1466)
.+.|..+.. . ...++.....+++++.|++++.++.+... +.+.+ ....||.|++|||+.+.....+
T Consensus 347 G~l~~gip~~----~-l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-------~~~~~-l~~~~DaV~latGa~~~~~~~i 413 (639)
T PRK12809 347 GMLTFGIPPF----K-LDKTVLSQRREIFTAMGIDFHLNCEIGRD-------ITFSD-LTSEYDAVFIGVGTYGMMRADL 413 (639)
T ss_pred CeeeccCCcc----c-CCHHHHHHHHHHHHHCCeEEEcCCccCCc-------CCHHH-HHhcCCEEEEeCCCCCCCCCCC
Confidence 111211111 0 11233344456778889999988865321 11111 1246999999999975433334
Q ss_pred CCC--CcEEEecCH-----HHHHhhcc------cCCCCCcEEEECCCHhHHHHHHHHhhCC-CEEEEEeecCcccccccC
Q psy2951 158 DGV--NKVFYLRTV-----EDANNIAP------HITPESNVVVIGSSFIGMEAAAFCASKV-KSVTVVGRGAVPFQESLG 223 (1466)
Q Consensus 158 ~~~--~~~~~~~~~-----~~~~~~~~------~~~~~~~vvVvGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~~~~~~~~ 223 (1466)
++. .+++....+ .+...+.. ....+++++|+|+|++++++|..+.++| .+||++++.+....+...
T Consensus 414 ~g~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~~~ 493 (639)
T PRK12809 414 PHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSR 493 (639)
T ss_pred CCCccCCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCH
Confidence 443 233331000 11111110 1235789999999999999999888888 589999987543222222
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCCeEEEEc--------------------CCCcEEeccEEEEeeccccC
Q psy2951 224 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANL--------------------DNGTTIPADLVIVGIGTVLN 283 (1466)
Q Consensus 224 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~--------------------~~g~~i~~D~Vi~a~G~~p~ 283 (1466)
.++ . .+++.||++++++.+++|..++++++..+.+ ++..++++|.||+|+|+.|+
T Consensus 494 ~e~----~-~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~ 568 (639)
T PRK12809 494 KEV----V-NAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAH 568 (639)
T ss_pred HHH----H-HHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCC
Confidence 222 2 3467899999999999997654455554321 11237899999999999997
Q ss_pred c-cccccCCceecCCccEEECC----CCCcCCCCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcC
Q psy2951 284 T-NYLDGKGVELNGQKAVVVNE----YLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVE 353 (1466)
Q Consensus 284 ~-~~l~~~gl~~~~~g~i~vd~----~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~ 353 (1466)
. .+++..+++++++|+|.+|+ +++|+.|+|||+||++..+ .++..|+.+|+.||.+|..
T Consensus 569 ~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~~g~-----------~~vv~Ai~~Gr~AA~~i~~ 632 (639)
T PRK12809 569 AMPWLQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGA-----------DLVVTAMAAGRQAARDMLT 632 (639)
T ss_pred ccccccccCcccCCCCCEEeCCCcccCcccCCCCEEEcCCCCCCc-----------hHHHHHHHHHHHHHHHHHH
Confidence 4 56777889998889999985 4899999999999998643 3467899999999999874
|
|
| >KOG0404|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-24 Score=213.50 Aligned_cols=288 Identities=19% Similarity=0.235 Sum_probs=208.3
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCC-CCCCCCccc---h-----hcccCcccccccChhhhhcCCeEE
Q psy2951 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENF-LPYDRVKLS---K-----QLDIKADSILLRTEEFYKDNDIHV 113 (1466)
Q Consensus 43 ~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~-~~~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~v~~ 113 (1466)
+.+|+|||+|||+.+||+++++.-.+..++|--.-+. .|....... + .-.+...++...++++..+++.++
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i 87 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEI 87 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhccee
Confidence 4589999999999999999999988888876322111 111111000 0 012345567777888888999999
Q ss_pred EeCceEEEeccccccEEEecCCcEEecCEEEEccCCCCCCCCCCCCC-CcEEEecCHHHHHhhcccC--CCCCcEEEECC
Q psy2951 114 IKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGV-NKVFYLRTVEDANNIAPHI--TPESNVVVIGS 190 (1466)
Q Consensus 114 ~~~~~v~~~~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~vvVvGg 190 (1466)
+..+....+....-+++.+ +.+.+.+|.+|+|||+..+++. +++. +.-|+-+.+..+.-++... +++|..+||||
T Consensus 88 ~tEtVskv~~sskpF~l~t-d~~~v~~~avI~atGAsAkRl~-~pg~ge~~fWqrGiSaCAVCDGaapifrnk~laVIGG 165 (322)
T KOG0404|consen 88 ITETVSKVDLSSKPFKLWT-DARPVTADAVILATGASAKRLH-LPGEGEGEFWQRGISACAVCDGAAPIFRNKPLAVIGG 165 (322)
T ss_pred eeeehhhccccCCCeEEEe-cCCceeeeeEEEecccceeeee-cCCCCcchHHhcccchhhcccCcchhhcCCeeEEEcC
Confidence 8877544444444455544 5567899999999999887764 3333 3336677777777777654 68899999999
Q ss_pred CHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHH-HHHHhCCcEEEcCceEEEEEecCC----CCeEEEEcCC
Q psy2951 191 SFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERIT-KLFESKGVKFVMKANVSSFEKNEK----NDVTAANLDN 265 (1466)
Q Consensus 191 G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~-~~l~~~GV~i~~~~~v~~i~~~~~----~~~~~v~~~~ 265 (1466)
|.+++|.|..|.+.+++|++++|.+... .+..++ +.++..+|+++.++.+.+..++.. -++..+.+.+
T Consensus 166 GDsA~EEA~fLtkyaskVyii~Rrd~fR-------As~~Mq~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge 238 (322)
T KOG0404|consen 166 GDSAMEEALFLTKYASKVYIIHRRDHFR-------ASKIMQQRAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGE 238 (322)
T ss_pred cHHHHHHHHHHHhhccEEEEEEEhhhhh-------HHHHHHHHHhcCCCeEEEechhhhhhccCcccccceEEEecccCc
Confidence 9999999999999999999999976432 223333 344556899999998877765421 1234445555
Q ss_pred CcEEeccEEEEeeccccCccccccCCceecCCccEEEC-CCCCcCCCCEEEecccccccCccCCCCcceeccHHHHHHHH
Q psy2951 266 GTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVN-EYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHG 344 (1466)
Q Consensus 266 g~~i~~D~Vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd-~~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g 344 (1466)
.+.++.+-+++++|..|++.+++. .+++|.+|||.+- ..-.||+|++||+||+.... ..++..|...|
T Consensus 239 ~~dl~v~GlFf~IGH~Pat~~l~g-qve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~k----------yRQAvTaAgsG 307 (322)
T KOG0404|consen 239 ETDLPVSGLFFAIGHSPATKFLKG-QVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDKK----------YRQAVTAAGSG 307 (322)
T ss_pred ccccccceeEEEecCCchhhHhcC-ceeeccCceEEeccCcccccccceeeccccchHH----------HHHHHhhhccc
Confidence 578999999999999999999987 7899999999987 45678999999999997543 34455566666
Q ss_pred HHHHHH
Q psy2951 345 RIAALN 350 (1466)
Q Consensus 345 ~~aa~~ 350 (1466)
-++|..
T Consensus 308 ciaald 313 (322)
T KOG0404|consen 308 CIAALD 313 (322)
T ss_pred hhhhhh
Confidence 666543
|
|
| >COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-25 Score=234.08 Aligned_cols=288 Identities=24% Similarity=0.325 Sum_probs=206.7
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCccchhc---ccCcccccccChhhhhcCCeEEEeCc
Q psy2951 41 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL---DIKADSILLRTEEFYKDNDIHVIKGK 117 (1466)
Q Consensus 41 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~ 117 (1466)
...|||+||||||||-+||.+.++.|.+.-++ .++-.....+....-... .....++...+++..+++.++++...
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~-aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~q 287 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLV-AERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQ 287 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchhhhh-hhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhh
Confidence 34699999999999999999999999875543 222111111111111111 12344555667777788888877654
Q ss_pred eEEEecc----ccccEEEecCCcEEecCEEEEccCCCCCCCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCCHh
Q psy2951 118 KIISDSE----LNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFI 193 (1466)
Q Consensus 118 ~v~~~~~----~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~ 193 (1466)
....... .+-..|++.+|..+.++.+|+|||++.+.+. .|+.+. +.-+...+|..++..++++|+|+|||||++
T Consensus 288 ra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~n-vPGE~e-~rnKGVayCPHCDGPLF~gK~VAVIGGGNS 365 (520)
T COG3634 288 RASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNMN-VPGEDE-YRNKGVAYCPHCDGPLFKGKRVAVIGGGNS 365 (520)
T ss_pred hhhcceecCCCCccEEEEecCCceeccceEEEecCcchhcCC-CCchHH-HhhCCeeeCCCCCCcccCCceEEEECCCcc
Confidence 4332211 2346788999999999999999999988764 444321 222344556667888899999999999999
Q ss_pred HHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHh-CCcEEEcCceEEEEEecCCCCeEEEEc---CCC--c
Q psy2951 194 GMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFES-KGVKFVMKANVSSFEKNEKNDVTAANL---DNG--T 267 (1466)
Q Consensus 194 g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~-~GV~i~~~~~v~~i~~~~~~~~~~v~~---~~g--~ 267 (1466)
|+|.|..|+..-..||+++-.+.+. .-+-+++.++. .+|+++++..-++|.+++ .++..+.. .+| +
T Consensus 366 GvEAAIDLAGiv~hVtllEF~~eLk-------AD~VLq~kl~sl~Nv~ii~na~Ttei~Gdg-~kV~Gl~Y~dr~sge~~ 437 (520)
T COG3634 366 GVEAAIDLAGIVEHVTLLEFAPELK-------ADAVLQDKLRSLPNVTIITNAQTTEVKGDG-DKVTGLEYRDRVSGEEH 437 (520)
T ss_pred hHHHHHhHHhhhheeeeeecchhhh-------hHHHHHHHHhcCCCcEEEecceeeEEecCC-ceecceEEEeccCCcee
Confidence 9999999999999999997654322 12345555555 589999999999998763 34444332 233 4
Q ss_pred EEeccEEEEeeccccCccccccCCceecCCccEEECCCCCcCCCCEEEecccccccCccCCCCcceeccHHHHHHHHHHH
Q psy2951 268 TIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIA 347 (1466)
Q Consensus 268 ~i~~D~Vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~a 347 (1466)
.++-+-|++-+|..||++||+.. ++++++|-|.||....||+|+|||+|||+..|. .++..|+.+|..|
T Consensus 438 ~l~LeGvFVqIGL~PNT~WLkg~-vel~~rGEIivD~~g~TsvpGvFAAGD~T~~~y----------KQIIIamG~GA~A 506 (520)
T COG3634 438 HLELEGVFVQIGLLPNTEWLKGA-VELNRRGEIIVDARGETNVPGVFAAGDCTTVPY----------KQIIIAMGEGAKA 506 (520)
T ss_pred EEEeeeeEEEEecccChhHhhch-hhcCcCccEEEecCCCcCCCceeecCcccCCcc----------ceEEEEecCcchh
Confidence 67788999999999999999987 899999999999999999999999999998764 2333455566655
Q ss_pred HHH
Q psy2951 348 ALN 350 (1466)
Q Consensus 348 a~~ 350 (1466)
+..
T Consensus 507 aL~ 509 (520)
T COG3634 507 SLS 509 (520)
T ss_pred hhh
Confidence 544
|
|
| >KOG0404|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-24 Score=213.38 Aligned_cols=269 Identities=18% Similarity=0.261 Sum_probs=201.7
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcC-CCCCCCCCCcc-------chhc-ccCcccccccCHhHhhhCCcE
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITD-ENFLPYDRVKL-------SKQL-DIKADSILLRTEEFYKDNDIH 664 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~-~~~~~~~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~gv~ 664 (1466)
.+.+|+|||.|||+.+||.++++...+..+++--- ++..|+..... +... +....++.++++++..++|.+
T Consensus 7 h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~ 86 (322)
T KOG0404|consen 7 HNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTE 86 (322)
T ss_pred eeeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhcce
Confidence 45699999999999999999999887743332111 11111111110 0011 145567788888888999999
Q ss_pred EEEceEEEEecccccc--EEEccCCCEEecCEEEEcCCCCCCcCCCCCCC-CcEEEecCHHHHHhhcccC--CCCCcEEE
Q psy2951 665 VIKGKKIISDSELNEK--KIKLQDGTSIDFTKIYLATGSSPRTISQADGV-NKVFYLRTVEDANNIAPHI--TPESNVVV 739 (1466)
Q Consensus 665 ~~~~~~v~~i~~~~~~--~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~--~~~~~vvV 739 (1466)
++..+ |..+ +...+ .+. ++.+.+.+|++|+|||+..+++.+| |. +..|+.+.+..+.-+.... .++|..+|
T Consensus 87 i~tEt-Vskv-~~sskpF~l~-td~~~v~~~avI~atGAsAkRl~~p-g~ge~~fWqrGiSaCAVCDGaapifrnk~laV 162 (322)
T KOG0404|consen 87 IITET-VSKV-DLSSKPFKLW-TDARPVTADAVILATGASAKRLHLP-GEGEGEFWQRGISACAVCDGAAPIFRNKPLAV 162 (322)
T ss_pred eeeee-hhhc-cccCCCeEEE-ecCCceeeeeEEEecccceeeeecC-CCCcchHHhcccchhhcccCcchhhcCCeeEE
Confidence 99988 8888 65533 333 3667899999999999999999888 76 3447777777776666544 56899999
Q ss_pred ECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHH-HHHHhcCcEEEccceEEEEEecCCCc-----eEEE
Q psy2951 740 IGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERIT-KLFESKGVKFVMKANVSSFEKNEKND-----VTAA 813 (1466)
Q Consensus 740 vG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~-~~l~~~gv~~~~~~~v~~i~~~~~~~-----~~~v 813 (1466)
||||.++||-|.+|.+.+.+|++++|++... .+..++ +.++.-+|++++++.+.+.. ++.+. +..+
T Consensus 163 IGGGDsA~EEA~fLtkyaskVyii~Rrd~fR-------As~~Mq~ra~~npnI~v~~nt~~~ea~-gd~~~l~~l~ikn~ 234 (322)
T KOG0404|consen 163 IGGGDSAMEEALFLTKYASKVYIIHRRDHFR-------ASKIMQQRAEKNPNIEVLYNTVAVEAL-GDGKLLNGLRIKNV 234 (322)
T ss_pred EcCcHHHHHHHHHHHhhccEEEEEEEhhhhh-------HHHHHHHHHhcCCCeEEEechhhhhhc-cCcccccceEEEec
Confidence 9999999999999999999999999997543 223333 34556689999999887776 22222 2334
Q ss_pred ECCCCcEEecCEEEEccccccCccccccCCceeeCCCcEEeC-CCCCCCCCCeEEeccccccC
Q psy2951 814 NLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVN-EYLETNVPGVYAGGDIAYAP 875 (1466)
Q Consensus 814 ~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd-~~~~t~~~~iya~GD~~~~~ 875 (1466)
.+.+...++++-+++++|..|++.+++. .+++|.+|+|++- ..-.||+|++||+||+....
T Consensus 235 ~tge~~dl~v~GlFf~IGH~Pat~~l~g-qve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~k 296 (322)
T KOG0404|consen 235 KTGEETDLPVSGLFFAIGHSPATKFLKG-QVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDKK 296 (322)
T ss_pred ccCcccccccceeEEEecCCchhhHhcC-ceeeccCceEEeccCcccccccceeeccccchHH
Confidence 4455568999999999999999999998 7999999999997 56789999999999998654
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-24 Score=269.38 Aligned_cols=332 Identities=23% Similarity=0.260 Sum_probs=217.3
Q ss_pred eEECCCCeeecCCCCCCCCeEEEEEEcCeEEEEEcccchhccccccccc--cccCCCCCCeEEEEcCchHHHHHHHHHHH
Q psy2951 539 CFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQARKDELKNKKRKLPM--AKLSSGNKDTFIVVGGGPSGATCVETLRQ 616 (1466)
Q Consensus 539 ~f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~vvVIGgG~AGl~aA~~l~~ 616 (1466)
-|....|+++..||...+..- . .+..+.+....+...+......+ +.+.....++|+|||+||+||++|+.|++
T Consensus 83 p~~~~~grvc~~~ce~~C~r~--~--~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~g~~V~VIGaGpaGL~aA~~l~~ 158 (564)
T PRK12771 83 PFPAVMGRVCYHPCESGCNRG--Q--VDDAVGINAVERFLGDYAIANGWKFPAPAPDTGKRVAVIGGGPAGLSAAYHLRR 158 (564)
T ss_pred CcchHhhCcCCchhHHhccCC--C--CCCCcCHHHHHHHHHHHHHHcCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH
Confidence 445556888888887642221 1 13334344444433322211111 12234567899999999999999999999
Q ss_pred cCCCccEEEEcCCCCCCCCCCccchhcccCcccccccCHhHhhhCCcEEEEceEE-EEeccccccEEEccCCCEEecCEE
Q psy2951 617 NGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKI-ISDSELNEKKIKLQDGTSIDFTKI 695 (1466)
Q Consensus 617 ~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v-~~i~~~~~~~v~~~~~~~~~~d~l 695 (1466)
+|++ |+++++.+.+++.. .........+.++.....+.+.+.|++++.++.+ ..+ .... ....||+|
T Consensus 159 ~G~~--V~v~e~~~~~GG~l-~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~-~~~~--------~~~~~D~V 226 (564)
T PRK12771 159 MGHA--VTIFEAGPKLGGMM-RYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDI-TLEQ--------LEGEFDAV 226 (564)
T ss_pred CCCe--EEEEecCCCCCCee-eecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcC-CHHH--------HHhhCCEE
Confidence 9987 78888876544321 1111101122334444556677889999998855 222 1111 11259999
Q ss_pred EEcCCCCC-CcCCCCCCCC--cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccC-CeEEEEeecCccCc
Q psy2951 696 YLATGSSP-RTISQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKV-KSVTVVGRGAVPFQ 771 (1466)
Q Consensus 696 viAtG~~~-~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g-~~V~lv~~~~~~~~ 771 (1466)
|+|||+.. ..+.++ |.+ +++....+............+++|+|+|+|+++++++..+.+++ .+|++++|.+....
T Consensus 227 i~AtG~~~~~~~~i~-g~~~~gv~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~ 305 (564)
T PRK12771 227 FVAIGAQLGKRLPIP-GEDAAGVLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDM 305 (564)
T ss_pred EEeeCCCCCCcCCCC-CCccCCcEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccC
Confidence 99999864 455666 654 33322222111111112234899999999999999999888887 78999999875332
Q ss_pred cccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCce----EEEEC----CCC---------cEEecCEEEEcccccc
Q psy2951 772 ESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDV----TAANL----DNG---------TTIPADLVIVGIGTVL 834 (1466)
Q Consensus 772 ~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~----~~v~~----~~g---------~~i~~D~vi~a~G~~p 834 (1466)
+....+ + +.+.+.||+++++..+.++...+++.+ ..+.. .+| .++++|+||+|+|+.|
T Consensus 306 ~~~~~~----~-~~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p 380 (564)
T PRK12771 306 PAHDEE----I-EEALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDI 380 (564)
T ss_pred CCCHHH----H-HHHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCC
Confidence 322222 2 234568999999999999974333322 12221 112 3799999999999999
Q ss_pred Ccccccc-CCceeeCCCcEEeCC-CCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhc
Q psy2951 835 NTNYLDG-KGVELNGQKAVVVNE-YLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMV 904 (1466)
Q Consensus 835 ~~~~~~~-~gl~~~~~G~i~vd~-~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~ 904 (1466)
++.+++. .++. +++|+|.+|+ +++|+.|+|||+|||+..+. ++..|+.||+.||.+|.
T Consensus 381 ~~~~~~~~~gl~-~~~G~i~vd~~~~~ts~~~Vfa~GD~~~g~~-----------~v~~Av~~G~~aA~~i~ 440 (564)
T PRK12771 381 DSAGLESVPGVE-VGRGVVQVDPNFMMTGRPGVFAGGDMVPGPR-----------TVTTAIGHGKKAARNID 440 (564)
T ss_pred chhhhhhccCcc-cCCCCEEeCCCCccCCCCCEEeccCcCCCch-----------HHHHHHHHHHHHHHHHH
Confidence 9888875 5777 7889999997 78899999999999987543 34789999999999985
|
|
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.6e-24 Score=250.20 Aligned_cols=292 Identities=20% Similarity=0.263 Sum_probs=195.5
Q ss_pred CCCCcEEEECCchHHHHHHHHHHh--cCCCCcEEEEcCCCCCCCCCCCCchhhc-cCcccccccChhhhccCCcEEEcCC
Q psy2951 1064 GNKDTFIVVGGGPSGATCVETLRQ--NGFTGKLYFITDENFLPYDRVKLSKQLD-IKADSILLRTEEFYKDNDIHVIKGK 1140 (1466)
Q Consensus 1064 ~~~~~vvIVG~G~aGl~aA~~L~~--~g~~~~i~li~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~ 1140 (1466)
...++|+||||||||++||..|++ .|+ +|+|||+.+.++ .......... .....+......++...+++++.+.
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~--~Vtv~E~~p~pg-Glvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv 100 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGA--RVDIIERLPTPF-GLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNV 100 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCC--eEEEEecCCCCc-ceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCE
Confidence 345789999999999999999987 566 999999998543 2221111000 0111111122334556688888776
Q ss_pred eEEEeecCCCCeEEecCCcEEecCeEEEecCCCC-CcCCCCCCCC--cEEEecCHH-------HHHhhhcccCCCCeEEE
Q psy2951 1141 KIISDSELNEKKIKLQDGTSIDFTKIYLATGSSP-RTISQADGVN--KVFYLRTVE-------DANNIAPHITPESNVVV 1210 (1466)
Q Consensus 1141 ~v~~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~~-~~~~~~~g~~--~v~~~~~~~-------~~~~l~~~~~~~~~vvV 1210 (1466)
++. +.+.+++. ...||+||||||+.+ +.+++| |.+ +|+..+++. ++..+...+..+++|+|
T Consensus 101 ~vg-------~dvtl~~L-~~~yDaVIlAtGa~~~~~l~Ip-G~d~~gV~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvV 171 (491)
T PLN02852 101 TLG-------RDVSLSEL-RDLYHVVVLAYGAESDRRLGIP-GEDLPGVLSAREFVWWYNGHPDCVHLPPDLKSSDTAVV 171 (491)
T ss_pred EEC-------ccccHHHH-hhhCCEEEEecCCCCCCCCCCC-CCCCCCeEEHHHHHHHhhcchhhhhhhhcccCCCEEEE
Confidence 332 22445443 347999999999975 778898 876 788765442 22222223346899999
Q ss_pred EcCCHHHHHHHHHHhcC--------------------CC-eEEEEcCCCcCCcccccHH---------------------
Q psy2951 1211 IGSSFIGMEAAAFCASK--------------------VK-SVTVVGRGAVPFQESLGKE--------------------- 1248 (1466)
Q Consensus 1211 vG~g~~g~e~a~~l~~~--------------------g~-~v~vv~~~~~~~~~~~~~~--------------------- 1248 (1466)
||+|++|+++|..|.+. +. +|+++.|....-...-..+
T Consensus 172 IGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l~~~~~~~~~~~~~~ 251 (491)
T PLN02852 172 LGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKNVRVRIKEADLTL 251 (491)
T ss_pred ECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhccCCCceeechhhhcc
Confidence 99999999999998765 54 6999998762211010111
Q ss_pred ----------------HHHHHHHHHHh---------CCcEEEcCceEEEEEecC--CCcEEEEEcC--------------
Q psy2951 1249 ----------------VGERITKLFES---------KGVKFVMKANVSSFEKNE--KNDVTAANLD-------------- 1287 (1466)
Q Consensus 1249 ----------------~~~~l~~~~~~---------~gv~~~~~~~v~~i~~~~--~g~~~~v~l~-------------- 1287 (1466)
..+.|.+...+ ++|.|++.....+|..++ ++++..+++.
T Consensus 252 ~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~ 331 (491)
T PLN02852 252 SPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQV 331 (491)
T ss_pred ccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcc
Confidence 11223333222 579999999999997222 2567666653
Q ss_pred ---CC--CeeecCEEEEeeccc--cCccc--cccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeee
Q psy2951 1288 ---NG--TTIPADLVIVGIGTV--LNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIG 1358 (1466)
Q Consensus 1288 ---~g--~~i~~D~vv~a~G~~--p~~~~--~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~ 1358 (1466)
+| ++++||.|+.++|+. |...+ -...|+..+.+|.|.+|..++|+.|+|||+|||.+.|....
T Consensus 332 ~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv~~n~~G~V~~d~~~~T~ipGvyAaGDi~~Gp~gvI-------- 403 (491)
T PLN02852 332 AVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDHKRGVVPNVHGRVLSSASGADTEPGLYVVGWLKRGPTGII-------- 403 (491)
T ss_pred cCCCCCEEEEECCEEEEeecCCCCCCCCCccccCcCeeECCCceEEeCCCCccCCCCEEEeeeEecCCCCee--------
Confidence 23 258999999999997 66553 33456777878999999888899999999999998776331
Q ss_pred cHHHHHHHHHHHHHHhcCC
Q psy2951 1359 HYQLAQYHGRIAALNMVEK 1377 (1466)
Q Consensus 1359 ~~~~A~~qa~~aa~~i~g~ 1377 (1466)
..++.+|+.+|.+|+.+
T Consensus 404 --~t~~~dA~~ta~~i~~d 420 (491)
T PLN02852 404 --GTNLTCAEETVASIAED 420 (491)
T ss_pred --eecHhhHHHHHHHHHHH
Confidence 45777888888888753
|
|
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.4e-24 Score=268.52 Aligned_cols=279 Identities=21% Similarity=0.288 Sum_probs=194.9
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCC-CCchhhccCcccccccChhhhccCCcEEEcCCeE
Q psy2951 1064 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV-KLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKI 1142 (1466)
Q Consensus 1064 ~~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 1142 (1466)
...++|+|||+|+||+++|..|++.|+ +|+|||+++..+.... .+... ...+++..+..+++++.|++++.+++|
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~--~v~vie~~~~~gG~~~~~i~~~--~~~~~~~~~~~~~~~~~gv~~~~~~~v 356 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGY--EVTVYESLSKPGGVMRYGIPSY--RLPDEALDKDIAFIEALGVKIHLNTRV 356 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCC--eEEEEecCCCCCceEeecCCcc--cCCHHHHHHHHHHHHHCCcEEECCCEe
Confidence 456789999999999999999999998 9999999876542111 01000 111222233345778889999999855
Q ss_pred EEeecCCCCeEEecCCcEEecCeEEEecCCC-CCcCCCCCCCC--cEEEecCHHHHHhhhccc-------CCCCeEEEEc
Q psy2951 1143 ISDSELNEKKIKLQDGTSIDFTKIYLATGSS-PRTISQADGVN--KVFYLRTVEDANNIAPHI-------TPESNVVVIG 1212 (1466)
Q Consensus 1143 ~~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~-~~~~~~~~g~~--~v~~~~~~~~~~~l~~~~-------~~~~~vvVvG 1212 (1466)
. . + +.+++ ....||+||+|||+. ++.+++| |.+ +++. ..+....+...+ ..+++|+|||
T Consensus 357 ~-~-~-----~~~~~-~~~~yD~vilAtGa~~~r~l~i~-G~~~~gv~~--a~~~l~~~~~~~~~~~~~~~~~k~VvVIG 425 (604)
T PRK13984 357 G-K-D-----IPLEE-LREKHDAVFLSTGFTLGRSTRIP-GTDHPDVIQ--ALPLLREIRDYLRGEGPKPKIPRSLVVIG 425 (604)
T ss_pred C-C-c-----CCHHH-HHhcCCEEEEEcCcCCCccCCCC-CcCCcCeEe--HHHHHHHHHhhhccCCCcCCCCCcEEEEC
Confidence 2 2 2 11111 235799999999985 6888898 876 5554 233333333221 2368999999
Q ss_pred CCHHHHHHHHHHhcCCC------eEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEc
Q psy2951 1213 SSFIGMEAAAFCASKVK------SVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANL 1286 (1466)
Q Consensus 1213 ~g~~g~e~a~~l~~~g~------~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l 1286 (1466)
+|++|+|+|..+.+++. +|+++.... ... .++....+ +.+ +.+.||+++++..+.++. .+++++..|++
T Consensus 426 GG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r-~~~-~~~~~~~e-~~~-~~~~GV~i~~~~~~~~i~-~~~g~v~~v~~ 500 (604)
T PRK13984 426 GGNVAMDIARSMARLQKMEYGEVNVKVTSLER-TFE-EMPADMEE-IEE-GLEEGVVIYPGWGPMEVV-IENDKVKGVKF 500 (604)
T ss_pred CchHHHHHHHHHHhccccccCceEEEEecccc-Ccc-cCCCCHHH-HHH-HHHcCCEEEeCCCCEEEE-ccCCEEEEEEE
Confidence 99999999999988753 788874321 110 12211211 223 346899999999998887 45666666554
Q ss_pred C--------CC-----------CeeecCEEEEeeccccCcccccc---CCceeeCCCeEEeCCCccccCCCEEEeccccc
Q psy2951 1287 D--------NG-----------TTIPADLVIVGIGTVLNTNYLDG---KGVELNGQKAVVVNEYLETNVPGVYAGGDIAY 1344 (1466)
Q Consensus 1287 ~--------~g-----------~~i~~D~vv~a~G~~p~~~~~~~---~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~ 1344 (1466)
. +| .++++|.|++|+|..|+++++.. .++..+ +|+|.||++++|++|+|||+|||+.
T Consensus 501 ~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~~-~G~i~vd~~~~Ts~~gVfAaGD~~~ 579 (604)
T PRK13984 501 KKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEFV-RGRILTNEYGQTSIPWLFAGGDIVH 579 (604)
T ss_pred EEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCcccc-CCeEEeCCCCccCCCCEEEecCcCC
Confidence 2 12 36999999999999999987753 245554 6789999999999999999999997
Q ss_pred CCCccCCCceeeeecHHHHHHHHHHHHHHhc
Q psy2951 1345 APLHSFYNKNASIGHYQLAQYHGRIAALNMV 1375 (1466)
Q Consensus 1345 ~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~ 1375 (1466)
.+.. ..|+.+|+.||.+|.
T Consensus 580 ~~~~------------v~Ai~~G~~AA~~I~ 598 (604)
T PRK13984 580 GPDI------------IHGVADGYWAAEGID 598 (604)
T ss_pred chHH------------HHHHHHHHHHHHHHH
Confidence 6642 469999999999985
|
|
| >TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-23 Score=271.15 Aligned_cols=278 Identities=16% Similarity=0.120 Sum_probs=199.6
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhc-ccCcccccccCHhHhhhC-CcEEEEceEE
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL-DIKADSILLRTEEFYKDN-DIHVIKGKKI 671 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-gv~~~~~~~v 671 (1466)
..+||+|||||||||+||..|++.|++ |+++|+++.+++......... +.+..++.....+.+... +++++.+++|
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~--V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V 239 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGAR--VILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTA 239 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCc--EEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEE
Confidence 468999999999999999999999988 888888766554332111111 122333444455556656 5999999888
Q ss_pred EEeccccccEEEc----------------cCCCEEecCEEEEcCCCCCCcCCCCCCCC--cEEEecCHHHHHhhcccCCC
Q psy2951 672 ISDSELNEKKIKL----------------QDGTSIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHITP 733 (1466)
Q Consensus 672 ~~i~~~~~~~v~~----------------~~~~~~~~d~lviAtG~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~ 733 (1466)
..+ ......... +...++.||+||||||+.++.|+++ |.+ +++.........+.. ....
T Consensus 240 ~~i-~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~pip-G~~~pgV~~~~~~~~~l~~~-~~~~ 316 (985)
T TIGR01372 240 FGY-YDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLVFA-NNDRPGVMLAGAARTYLNRY-GVAP 316 (985)
T ss_pred EEE-ecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCCCC-CCCCCCcEEchHHHHHHHhh-CcCC
Confidence 877 322111000 0112689999999999999999998 866 676655544432211 1235
Q ss_pred CCcEEEECCChHHHHHHHHHhccCC-eEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEE
Q psy2951 734 ESNVVVIGSSFIGMEAAAFCASKVK-SVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTA 812 (1466)
Q Consensus 734 ~~~vvVvG~G~~g~e~A~~l~~~g~-~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~ 812 (1466)
+++|+|||+|++|+|+|..|++.|. .|+|+++.+.. ...+.+.++++||++++++.++++.. ++.+..
T Consensus 317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~---------~~~l~~~L~~~GV~i~~~~~v~~i~g--~~~v~~ 385 (985)
T TIGR01372 317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV---------SPEARAEARELGIEVLTGHVVAATEG--GKRVSG 385 (985)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch---------hHHHHHHHHHcCCEEEcCCeEEEEec--CCcEEE
Confidence 8999999999999999999999994 57888776432 23456778899999999999999983 334444
Q ss_pred EECC----CCcEEecCEEEEccccccCccccccCCceee--CC--CcEEeCCCCCCCCCCeEEeccccccCCcccCCcee
Q psy2951 813 ANLD----NGTTIPADLVIVGIGTVLNTNYLDGKGVELN--GQ--KAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNA 884 (1466)
Q Consensus 813 v~~~----~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~--~~--G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~ 884 (1466)
+.+. ++++++||.|++++|++|++++++.+++.+. +. +++. .|+.|+||++||++.....
T Consensus 386 V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~~~~~~~~~~~~~-----~t~v~gVyaaGD~~g~~~~------- 453 (985)
T TIGR01372 386 VAVARNGGAGQRLEADALAVSGGWTPVVHLFSQRGGKLAWDAAIAAFLP-----GDAVQGCILAGAANGLFGL------- 453 (985)
T ss_pred EEEEecCCceEEEECCEEEEcCCcCchhHHHHhcCCCeeeccccCceec-----CCCCCCeEEeeccCCccCH-------
Confidence 4443 5568999999999999999999888776542 21 2221 3779999999999865433
Q ss_pred eeccHHHHHHHHHHHHHHhc
Q psy2951 885 SIGHYQLAQYHGRIAALNMV 904 (1466)
Q Consensus 885 ~~~~~~~A~~~g~~aA~~i~ 904 (1466)
..|+.+|+.||..|+
T Consensus 454 -----~~A~~eG~~Aa~~i~ 468 (985)
T TIGR01372 454 -----AAALADGAAAGAAAA 468 (985)
T ss_pred -----HHHHHHHHHHHHHHH
Confidence 479999999999986
|
This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-22 Score=263.39 Aligned_cols=279 Identities=16% Similarity=0.137 Sum_probs=198.9
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhc-cCcccccccChhhhccC-CcEEEcCCeE
Q psy2951 1065 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD-IKADSILLRTEEFYKDN-DIHVIKGKKI 1142 (1466)
Q Consensus 1065 ~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~-~v~~~~~~~v 1142 (1466)
..++|+||||||||++||..|++.|. +|+|||+++.++........... .+..++.....+.+... +++++.+++|
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~--~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V 239 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGA--RVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTA 239 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCC--cEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEE
Confidence 35789999999999999999999998 99999998765532211111111 11111111222333334 5999999999
Q ss_pred EEeecCCCCeEEe-----------c-----CCcEEecCeEEEecCCCCCcCCCCCCCC--cEEEecCHHHHHhhhcccCC
Q psy2951 1143 ISDSELNEKKIKL-----------Q-----DGTSIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHITP 1204 (1466)
Q Consensus 1143 ~~i~d~~~~~v~~-----------~-----~g~~~~yd~lvlAtG~~~~~~~~~~g~~--~v~~~~~~~~~~~l~~~~~~ 1204 (1466)
..+ +.......+ . .-.++.||+||||||+.++.+++| |.+ +|++........+ ......
T Consensus 240 ~~i-~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~pip-G~~~pgV~~~~~~~~~l~-~~~~~~ 316 (985)
T TIGR01372 240 FGY-YDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLVFA-NNDRPGVMLAGAARTYLN-RYGVAP 316 (985)
T ss_pred EEE-ecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCCCC-CCCCCCcEEchHHHHHHH-hhCcCC
Confidence 888 653321111 0 011688999999999999999999 876 7887654444322 112335
Q ss_pred CCeEEEEcCCHHHHHHHHHHhcCCC-eEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEE
Q psy2951 1205 ESNVVVIGSSFIGMEAAAFCASKVK-SVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTA 1283 (1466)
Q Consensus 1205 ~~~vvVvG~g~~g~e~a~~l~~~g~-~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~ 1283 (1466)
+++|+|||+|.+++|+|..|++.|. .|+++++.+.. ...+.+.++++||++++++.++++. + ++++..
T Consensus 317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~---------~~~l~~~L~~~GV~i~~~~~v~~i~-g-~~~v~~ 385 (985)
T TIGR01372 317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV---------SPEARAEARELGIEVLTGHVVAATE-G-GKRVSG 385 (985)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch---------hHHHHHHHHHcCCEEEcCCeEEEEe-c-CCcEEE
Confidence 8999999999999999999999995 57888776522 2345677899999999999999998 3 345555
Q ss_pred EEcC----CCCeeecCEEEEeeccccCccccccCCceee--CC-CeEEeCCCccccCCCEEEecccccCCCccCCCceee
Q psy2951 1284 ANLD----NGTTIPADLVIVGIGTVLNTNYLDGKGVELN--GQ-KAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNAS 1356 (1466)
Q Consensus 1284 v~l~----~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~--~~-G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~ 1356 (1466)
|++. ++++++||.|++++|..|+++++...|..+. .. +... -.|+.|+||++||++.....
T Consensus 386 V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~~~~~~~~~~~~----~~t~v~gVyaaGD~~g~~~~-------- 453 (985)
T TIGR01372 386 VAVARNGGAGQRLEADALAVSGGWTPVVHLFSQRGGKLAWDAAIAAFL----PGDAVQGCILAGAANGLFGL-------- 453 (985)
T ss_pred EEEEecCCceEEEECCEEEEcCCcCchhHHHHhcCCCeeeccccCcee----cCCCCCCeEEeeccCCccCH--------
Confidence 6654 4578999999999999999999988775543 21 1111 13668999999998865533
Q ss_pred eecHHHHHHHHHHHHHHhc
Q psy2951 1357 IGHYQLAQYHGRIAALNMV 1375 (1466)
Q Consensus 1357 ~~~~~~A~~qa~~aa~~i~ 1375 (1466)
..|..+|+.||..++
T Consensus 454 ----~~A~~eG~~Aa~~i~ 468 (985)
T TIGR01372 454 ----AAALADGAAAGAAAA 468 (985)
T ss_pred ----HHHHHHHHHHHHHHH
Confidence 579999999998885
|
This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-21 Score=244.88 Aligned_cols=279 Identities=25% Similarity=0.315 Sum_probs=192.1
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhc--cCcccccccChhhhccCCcEEEcCCe
Q psy2951 1064 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD--IKADSILLRTEEFYKDNDIHVIKGKK 1141 (1466)
Q Consensus 1064 ~~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~ 1141 (1466)
...++|+|||+|++||++|..|++.|+ +|+++|+++.++.... ..+. ..+.++.....+.+.+.|++++.++.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~--~V~v~e~~~~~GG~l~---~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~ 209 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGH--AVTIFEAGPKLGGMMR---YGIPAYRLPREVLDAEIQRILDLGVEVRLGVR 209 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC--eEEEEecCCCCCCeee---ecCCCccCCHHHHHHHHHHHHHCCCEEEeCCE
Confidence 456789999999999999999999998 8999999876543211 0000 00111111222456678999988875
Q ss_pred E-EEeecCCCCeEEecCCcEEecCeEEEecCCC-CCcCCCCCCCC--cEEEecCHHHHHhhhcccCCCCeEEEEcCCHHH
Q psy2951 1142 I-ISDSELNEKKIKLQDGTSIDFTKIYLATGSS-PRTISQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIG 1217 (1466)
Q Consensus 1142 v-~~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~-~~~~~~~~g~~--~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g 1217 (1466)
+ ..+ .... + ...||++++|||+. +..+.++ |.+ +++..-.+-...........+++|+|+|+|..+
T Consensus 210 ~~~~~-~~~~----~----~~~~D~Vi~AtG~~~~~~~~i~-g~~~~gv~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a 279 (564)
T PRK12771 210 VGEDI-TLEQ----L----EGEFDAVFVAIGAQLGKRLPIP-GEDAAGVLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTA 279 (564)
T ss_pred ECCcC-CHHH----H----HhhCCEEEEeeCCCCCCcCCCC-CCccCCcEEHHHHHHHhhccCCcCCCCCEEEECChHHH
Confidence 4 333 2111 1 23599999999985 4555666 654 444322111111111122348999999999999
Q ss_pred HHHHHHHhcCC-CeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEE-----Ec----C
Q psy2951 1218 MEAAAFCASKV-KSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAA-----NL----D 1287 (1466)
Q Consensus 1218 ~e~a~~l~~~g-~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v-----~l----~ 1287 (1466)
++.+..+.+.+ .+|+++.+.+.........+ + +...+.||+++++..+.++. .+++....+ .+ .
T Consensus 280 ~d~a~~a~~lga~~v~ii~r~~~~~~~~~~~~----~-~~a~~~GVki~~~~~~~~i~-~~~~~~~~v~~~~~~~~~~~~ 353 (564)
T PRK12771 280 MDAARTARRLGAEEVTIVYRRTREDMPAHDEE----I-EEALREGVEINWLRTPVEIE-GDENGATGLRVITVEKMELDE 353 (564)
T ss_pred HHHHHHHHHcCCCEEEEEEecCcccCCCCHHH----H-HHHHHcCCEEEecCCcEEEE-cCCCCEEEEEEEEEEecccCC
Confidence 99999888888 67999988764321122222 2 23456899999999999997 343332222 22 2
Q ss_pred CC---------CeeecCEEEEeeccccCcccccc-CCceeeCCCeEEeCC-CccccCCCEEEecccccCCCccCCCceee
Q psy2951 1288 NG---------TTIPADLVIVGIGTVLNTNYLDG-KGVELNGQKAVVVNE-YLETNVPGVYAGGDIAYAPLHSFYNKNAS 1356 (1466)
Q Consensus 1288 ~g---------~~i~~D~vv~a~G~~p~~~~~~~-~gl~~~~~G~i~vd~-~~~t~~~~v~a~GD~a~~p~~~~~~~~~~ 1356 (1466)
+| .++++|.||+|+|..|++++++. .++. +.+|+|.+|+ +++|+.|+|||+|||+..|..
T Consensus 354 ~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~~~~gl~-~~~G~i~vd~~~~~ts~~~Vfa~GD~~~g~~~-------- 424 (564)
T PRK12771 354 DGRPSPVTGEEETLEADLVVLAIGQDIDSAGLESVPGVE-VGRGVVQVDPNFMMTGRPGVFAGGDMVPGPRT-------- 424 (564)
T ss_pred CCCeeecCCceEEEECCEEEECcCCCCchhhhhhccCcc-cCCCCEEeCCCCccCCCCCEEeccCcCCCchH--------
Confidence 22 37899999999999999888885 6787 7788999997 789999999999999875543
Q ss_pred eecHHHHHHHHHHHHHHhc
Q psy2951 1357 IGHYQLAQYHGRIAALNMV 1375 (1466)
Q Consensus 1357 ~~~~~~A~~qa~~aa~~i~ 1375 (1466)
+..|..||+.||.+|.
T Consensus 425 ---v~~Av~~G~~aA~~i~ 440 (564)
T PRK12771 425 ---VTTAIGHGKKAARNID 440 (564)
T ss_pred ---HHHHHHHHHHHHHHHH
Confidence 3789999999999985
|
|
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.2e-21 Score=228.49 Aligned_cols=279 Identities=16% Similarity=0.205 Sum_probs=186.4
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCcc--------------------------------
Q psy2951 592 SGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKL-------------------------------- 639 (1466)
Q Consensus 592 ~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~-------------------------------- 639 (1466)
....++|+|||||||||+||+.|++.|++ ++++|++...++.....
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~~G~~--v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~ 84 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRREGHT--VVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRE 84 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHhcCCe--EEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHh
Confidence 34568999999999999999999999987 77777765443221100
Q ss_pred ----chhcc--------------cCcccccccCHhHhhhCCcE--EEEceEEEEecccc--ccEEEccCC--C--EEecC
Q psy2951 640 ----SKQLD--------------IKADSILLRTEEFYKDNDIH--VIKGKKIISDSELN--EKKIKLQDG--T--SIDFT 693 (1466)
Q Consensus 640 ----~~~~~--------------~~~~~~~~~~~~~~~~~gv~--~~~~~~v~~i~~~~--~~~v~~~~~--~--~~~~d 693 (1466)
+.... ....++..++..+.+..++. ++++++|+.+ +.. .+.|++.++ . +..||
T Consensus 85 ~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V-~~~~~~w~V~~~~~~~~~~~~~~d 163 (461)
T PLN02172 85 CMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRV-EPVDGKWRVQSKNSGGFSKDEIFD 163 (461)
T ss_pred hccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEE-eecCCeEEEEEEcCCCceEEEEcC
Confidence 00000 12244566666777778888 8899999998 543 345655432 1 46799
Q ss_pred EEEEcCC--CCCCcCCCCCCCC----cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecC
Q psy2951 694 KIYLATG--SSPRTISQADGVN----KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGA 767 (1466)
Q Consensus 694 ~lviAtG--~~~~~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~ 767 (1466)
+||+||| +.|+.|+++ |.+ ...+..+..+.. ..++|+|+|||+|++|+|+|..|.+.+++|+++.|..
T Consensus 164 ~VIvAtG~~~~P~~P~ip-G~~~f~G~~iHs~~yr~~~-----~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 164 AVVVCNGHYTEPNVAHIP-GIKSWPGKQIHSHNYRVPD-----PFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred EEEEeccCCCCCcCCCCC-CcccCCceEEEecccCCcc-----ccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 9999999 789999999 875 122222222211 2358999999999999999999999999999999975
Q ss_pred ccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCccccccCC-cee
Q psy2951 768 VPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKG-VEL 846 (1466)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~g-l~~ 846 (1466)
.... .+.+.....++..+..|..+.. ++ .|.+.||+.+++|.||+|||++++.+|++..+ +.+
T Consensus 238 ~~~~-----------~~~~~~~~~~v~~~~~I~~~~~--~g---~V~f~DG~~~~~D~Ii~~TGy~~~~pfL~~~~~i~v 301 (461)
T PLN02172 238 ESDT-----------YEKLPVPQNNLWMHSEIDTAHE--DG---SIVFKNGKVVYADTIVHCTGYKYHFPFLETNGYMRI 301 (461)
T ss_pred cccc-----------cccCcCCCCceEECCcccceec--CC---eEEECCCCCccCCEEEECCcCCccccccCcccceee
Confidence 3210 0111122334455666666652 22 47889999999999999999999999987533 222
Q ss_pred eCCCcEEeCCC-CCCC-CCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCC
Q psy2951 847 NGQKAVVVNEY-LETN-VPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK 907 (1466)
Q Consensus 847 ~~~G~i~vd~~-~~t~-~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~ 907 (1466)
+++.-...-.+ +-.. .|+++.+|=.... ..+..+..|++.+|+-+.|+.
T Consensus 302 ~~~~v~~Ly~~~f~~~~~p~LafiG~~~~~------------~~f~~~E~Qa~~~a~v~sG~~ 352 (461)
T PLN02172 302 DENRVEPLYKHVFPPALAPGLSFIGLPAMG------------IQFVMFEIQSKWVAAVLSGRV 352 (461)
T ss_pred CCCcchhhHHhhcCCCCCCcEEEEeccccc------------cCchhHHHHHHHHHHHHcCCC
Confidence 22210000011 1122 4899999943211 123579999999999988864
|
|
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-21 Score=231.25 Aligned_cols=278 Identities=17% Similarity=0.243 Sum_probs=183.2
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCC-----------------------------Cchhh
Q psy2951 1064 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK-----------------------------LSKQL 1114 (1466)
Q Consensus 1064 ~~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~-----------------------------l~~~~ 1114 (1466)
...++|+|||||+|||+||..|++.|. +++++|+++..+..... +++..
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~--~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~ 85 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGH--TVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPREC 85 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCC--eEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhh
Confidence 345789999999999999999999998 99999998754421100 00000
Q ss_pred ------ccCc---------------ccccccChhhhccCCcE--EEcCCeEEEeecCCCC--eEEecCC--c--EEecCe
Q psy2951 1115 ------DIKA---------------DSILLRTEEFYKDNDIH--VIKGKKIISDSELNEK--KIKLQDG--T--SIDFTK 1165 (1466)
Q Consensus 1115 ------~~~~---------------~~~~~~~~~~~~~~~v~--~~~~~~v~~i~d~~~~--~v~~~~g--~--~~~yd~ 1165 (1466)
.... .++.....++.+.+++. ++++++|++| ++..+ .|++.++ . +..||+
T Consensus 86 m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V-~~~~~~w~V~~~~~~~~~~~~~~d~ 164 (461)
T PLN02172 86 MGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRV-EPVDGKWRVQSKNSGGFSKDEIFDA 164 (461)
T ss_pred ccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEE-eecCCeEEEEEEcCCCceEEEEcCE
Confidence 0000 00111112344456777 8899999999 87544 4555432 1 457999
Q ss_pred EEEecC--CCCCcCCCCCCCC---c-EEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCc
Q psy2951 1166 IYLATG--SSPRTISQADGVN---K-VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAV 1239 (1466)
Q Consensus 1166 lvlAtG--~~~~~~~~~~g~~---~-v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~ 1239 (1466)
||+||| +.|+.|++| |++ + ..+..++.+...+ .+|+|+|||+|.+|+|+|..|.+.+.+|+++.|...
T Consensus 165 VIvAtG~~~~P~~P~ip-G~~~f~G~~iHs~~yr~~~~~-----~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~ 238 (461)
T PLN02172 165 VVVCNGHYTEPNVAHIP-GIKSWPGKQIHSHNYRVPDPF-----KNEVVVVIGNFASGADISRDIAKVAKEVHIASRASE 238 (461)
T ss_pred EEEeccCCCCCcCCCCC-CcccCCceEEEecccCCcccc-----CCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeecc
Confidence 999999 589999999 876 2 2222223332222 389999999999999999999999999999998753
Q ss_pred CCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccCccccccCC-ceee
Q psy2951 1240 PFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKG-VELN 1318 (1466)
Q Consensus 1240 ~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~~~~~~~~g-l~~~ 1318 (1466)
... + ..+......+..+..|..+. +++ .|.+.||+++++|.||+|||+.|+.+||+..+ +.++
T Consensus 239 ~~~----------~-~~~~~~~~~v~~~~~I~~~~--~~g---~V~f~DG~~~~~D~Ii~~TGy~~~~pfL~~~~~i~v~ 302 (461)
T PLN02172 239 SDT----------Y-EKLPVPQNNLWMHSEIDTAH--EDG---SIVFKNGKVVYADTIVHCTGYKYHFPFLETNGYMRID 302 (461)
T ss_pred ccc----------c-ccCcCCCCceEECCccccee--cCC---eEEECCCCCccCCEEEECCcCCccccccCcccceeeC
Confidence 210 0 00111223445566677665 233 38899999999999999999999999987533 2222
Q ss_pred CCCeE--EeCCCcccc-CCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCCCC
Q psy2951 1319 GQKAV--VVNEYLETN-VPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 1379 (1466)
Q Consensus 1319 ~~G~i--~vd~~~~t~-~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~~ 1379 (1466)
++. + +-.+-+-.. .|+++.+|=... ...|..+..||+.+|+.+.|+..
T Consensus 303 ~~~-v~~Ly~~~f~~~~~p~LafiG~~~~------------~~~f~~~E~Qa~~~a~v~sG~~~ 353 (461)
T PLN02172 303 ENR-VEPLYKHVFPPALAPGLSFIGLPAM------------GIQFVMFEIQSKWVAAVLSGRVT 353 (461)
T ss_pred CCc-chhhHHhhcCCCCCCcEEEEecccc------------ccCchhHHHHHHHHHHHHcCCCC
Confidence 211 1 000112222 378888884311 22347899999999999999754
|
|
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.1e-22 Score=231.22 Aligned_cols=338 Identities=22% Similarity=0.247 Sum_probs=227.1
Q ss_pred EECCCCeeecCC--CCCCCCeEEEEEEcCeEEEEEcccchhcccc---ccccccccCCCCCCeEEEEcCchHHHHHHHHH
Q psy2951 540 FNIATGDIEDFP--GMDSLPCYKVTIQNDDSVVVQARKDELKNKK---RKLPMAKLSSGNKDTFIVVGGGPSGATCVETL 614 (1466)
Q Consensus 540 f~~~~G~~~~~p--~~~~l~~~~v~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~vvVIGgG~AGl~aA~~l 614 (1466)
|...+|+++..+ |... |... .++..+.+......+++.+ ++-+...+...+.++|+|||||||||++|..|
T Consensus 67 ~p~~~gRvcp~~~~ceg~--cv~~--~~~~~v~i~~le~~i~d~~~~~g~i~~~~~~~~tg~~VaviGaGPAGl~~a~~L 142 (457)
T COG0493 67 LPAITGRVCPLGNLCEGA--CVLG--IEELPVNIGALERAIGDKADREGWIPGELPGSRTGKKVAVIGAGPAGLAAADDL 142 (457)
T ss_pred CccccCccCCCCCceeee--eeec--cCCCchhhhhHHHHHhhHHHHhCCCCCCCCCCCCCCEEEEECCCchHhhhHHHH
Confidence 334456666555 4432 1111 1344455555555555544 23333333345569999999999999999999
Q ss_pred HHcCCCccEEEEcCCCCCCCCCCccchhcccCcccccccCHhHhhhCCcEEEEceEEEEeccccccEEEccCCCEEecCE
Q psy2951 615 RQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTK 694 (1466)
Q Consensus 615 ~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~d~ 694 (1466)
++.|+. |+++++.+..++ ...+...-.....++..+..+.+++.|++|+.++++-.. ++++ ...-+||+
T Consensus 143 ~~~G~~--Vtv~e~~~~~GG-ll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~-------it~~-~L~~e~Da 211 (457)
T COG0493 143 SRAGHD--VTVFERVALDGG-LLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRD-------ITLE-ELLKEYDA 211 (457)
T ss_pred HhCCCe--EEEeCCcCCCce-eEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECCc-------CCHH-HHHHhhCE
Confidence 999998 677777654332 222222222455678888899999999999999966321 1111 11235799
Q ss_pred EEEcCCC-CCCcCCCCCCCC--cEEEecCHHHHHh---hcc------cCCCCCcEEEECCChHHHHHHHHHhccCC-eEE
Q psy2951 695 IYLATGS-SPRTISQADGVN--KVFYLRTVEDANN---IAP------HITPESNVVVIGSSFIGMEAAAFCASKVK-SVT 761 (1466)
Q Consensus 695 lviAtG~-~~~~~~~~~g~~--~~~~~~~~~~~~~---~~~------~~~~~~~vvVvG~G~~g~e~A~~l~~~g~-~V~ 761 (1466)
+++|||+ .|+..+++ |.+ +++...+...... +.. ...++|+|+|||+|.++++++....+.|. +|+
T Consensus 212 v~l~~G~~~~~~l~i~-g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~ 290 (457)
T COG0493 212 VFLATGAGKPRPLDIP-GEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVT 290 (457)
T ss_pred EEEeccccCCCCCCCC-CcCCCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEE
Confidence 9999995 68888888 776 4433222221111 110 01135999999999999999988888876 788
Q ss_pred EEeecCcc-CccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCC-------------------C--c
Q psy2951 762 VVGRGAVP-FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDN-------------------G--T 819 (1466)
Q Consensus 762 lv~~~~~~-~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~-------------------g--~ 819 (1466)
.+++...- -....+........+...++|+.+.+.....++..+++|++..+.+.. | .
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~ 370 (457)
T COG0493 291 CFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEK 370 (457)
T ss_pred EeccccccccCCcccccchhhhhhhhhhcCCcccccCCceeEeecCCCcEeeeecccccccCcccccccccCccccCceE
Confidence 88643322 111122223344556778889999999999999877777776553311 2 2
Q ss_pred EEecCEEEEccccccCccc-c-ccCCceeeCCCcEEeCCCC-CCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHH
Q psy2951 820 TIPADLVIVGIGTVLNTNY-L-DGKGVELNGQKAVVVNEYL-ETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHG 896 (1466)
Q Consensus 820 ~i~~D~vi~a~G~~p~~~~-~-~~~gl~~~~~G~i~vd~~~-~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g 896 (1466)
++++|+|+.|+|+.++... . ...++..+..|.+.+++.+ +|+.|++||.||+....... ..|+.+|
T Consensus 371 ~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g~~~v-----------v~ai~eG 439 (457)
T COG0493 371 TDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGAALV-----------VWAIAEG 439 (457)
T ss_pred EehHHHHHHHhccCCCcccccccccccccCCCCceecccccccccCCCeeeCceeccchhhh-----------hhHHhhc
Confidence 5789999999999887443 2 2336788889999999988 99999999999999864433 5899999
Q ss_pred HHHHHHhc
Q psy2951 897 RIAALNMV 904 (1466)
Q Consensus 897 ~~aA~~i~ 904 (1466)
+.+|+.|-
T Consensus 440 r~aak~i~ 447 (457)
T COG0493 440 REAAKAID 447 (457)
T ss_pred hHHHHhhh
Confidence 99998874
|
|
| >KOG0399|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.5e-21 Score=225.79 Aligned_cols=363 Identities=18% Similarity=0.251 Sum_probs=221.8
Q ss_pred EEEEeCCCCCCCcccCCceecCCEEEccCC------------------------CceEECCCCeeecCCCCCCCCeEEEE
Q psy2951 507 IYAVGTKCSHYGAPLVKGSLGDGRVRCPWH------------------------GACFNIATGDIEDFPGMDSLPCYKVT 562 (1466)
Q Consensus 507 ~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H------------------------~~~f~~~~G~~~~~p~~~~l~~~~v~ 562 (1466)
+.-..++|...|.|++.+. .+ ||.- -..|.--||++|..||.+.+ +..+
T Consensus 1679 ~~~qtarcmdcgtpfc~~~-~g----cpl~n~ip~~nelvfk~~wk~al~~ll~tnnfpeftgrvcpapcegac-tlgi- 1751 (2142)
T KOG0399|consen 1679 LREQTARCMDCGTPFCQSD-SG----CPLGNIIPKFNELVFKNQWKEALEQLLETNNFPEFTGRVCPAPCEGAC-TLGI- 1751 (2142)
T ss_pred hHHHhhHHhcCCCccccCC-CC----CccccccccHHHHHHHHHHHHHHHHHHhhCCCccccCccCCCCcCcce-eeec-
Confidence 3334578888888876652 12 4432 22455568999999998752 2332
Q ss_pred EEcCeEEEEEcccchhcccc---ccccccccCCCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCcc
Q psy2951 563 IQNDDSVVVQARKDELKNKK---RKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKL 639 (1466)
Q Consensus 563 i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~ 639 (1466)
+ ...+.+...+..+.+++ +|..+.++...+.++|.|||.|||||+||-.|-+.||. |+++|+....++-...-
T Consensus 1752 i--e~pv~iksie~aiid~af~egwm~p~pp~~rtg~~vaiigsgpaglaaadqlnk~gh~--v~vyer~dr~ggll~yg 1827 (2142)
T KOG0399|consen 1752 I--EPPVGIKSIECAIIDKAFEEGWMKPCPPAFRTGKRVAIIGSGPAGLAAADQLNKAGHT--VTVYERSDRVGGLLMYG 1827 (2142)
T ss_pred c--cCCccccchhhHHHHHHHHhcCCccCCcccccCcEEEEEccCchhhhHHHHHhhcCcE--EEEEEecCCcCceeeec
Confidence 1 23344444555555544 56555666667889999999999999999999999998 66666665444221110
Q ss_pred chhcccCcccccccCHhHhhhCCcEEEEceEEEEeccccccEEEccCCCEEecCEEEEcCCC-CCCcCCCCCCCC--cEE
Q psy2951 640 SKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGS-SPRTISQADGVN--KVF 716 (1466)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~d~lviAtG~-~~~~~~~~~g~~--~~~ 716 (1466)
..... ....+..+..+.+.+.||+|+.++++..- +.+ |+-.-.+|++|+|+|+ .|+.+++| |-+ ++.
T Consensus 1828 ipnmk-ldk~vv~rrv~ll~~egi~f~tn~eigk~-------vs~-d~l~~~~daiv~a~gst~prdlpv~-grd~kgv~ 1897 (2142)
T KOG0399|consen 1828 IPNMK-LDKFVVQRRVDLLEQEGIRFVTNTEIGKH-------VSL-DELKKENDAIVLATGSTTPRDLPVP-GRDLKGVH 1897 (2142)
T ss_pred CCccc-hhHHHHHHHHHHHHhhCceEEeecccccc-------ccH-HHHhhccCeEEEEeCCCCCcCCCCC-CccccccH
Confidence 01111 12235667778889999999999965321 322 3445579999999996 59999999 877 332
Q ss_pred EecCHHHHH--hh-------cccCCCCCcEEEECCChHHHHHHHHHhccCCe-EEEEeecCccCc--------cccC---
Q psy2951 717 YLRTVEDAN--NI-------APHITPESNVVVIGSSFIGMEAAAFCASKVKS-VTVVGRGAVPFQ--------ESLG--- 775 (1466)
Q Consensus 717 ~~~~~~~~~--~~-------~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~-V~lv~~~~~~~~--------~~~~--- 775 (1466)
+.-.+.+.. .+ ...-.++|+|+|||||.+|-+|-..-.++|.+ |.-++--|.+.. ++.+
T Consensus 1898 fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~ellp~pp~~ra~~npwpqwprvf 1977 (2142)
T KOG0399|consen 1898 FAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFELLPQPPPERAPDNPWPQWPRVF 1977 (2142)
T ss_pred HHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccccccchhhccceecceeecCCCCcccCCCCCCccCceEE
Confidence 211111100 00 00113689999999999999998777777643 332322221100 1111
Q ss_pred -HHHH-HHHHHHHHhcCcEEEccc-----------------eEEEE--EecCCCceEEEECCC-CcEEecCEEEEccccc
Q psy2951 776 -KEVG-ERITKLFESKGVKFVMKA-----------------NVSSF--EKNEKNDVTAANLDN-GTTIPADLVIVGIGTV 833 (1466)
Q Consensus 776 -~~~~-~~~~~~l~~~gv~~~~~~-----------------~v~~i--~~~~~~~~~~v~~~~-g~~i~~D~vi~a~G~~ 833 (1466)
-+.. +...+. .|-...+.+ +.+++ ++++.+.-.-++..+ .+.++||+||+|.|+.
T Consensus 1978 rvdygh~e~~~~---~g~dpr~y~vltk~f~~~~~g~v~gl~~vrvew~k~~~g~w~~~ei~~see~~eadlv~lamgf~ 2054 (2142)
T KOG0399|consen 1978 RVDYGHAEAKEH---YGSDPRTYSVLTKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFV 2054 (2142)
T ss_pred EeecchHHHHHH---hCCCcceeeeeeeeeeccCCCceeeEEEEEEEEEecCCCceEEEEcCCcceeeecceeeeecccc
Confidence 0000 111111 122221111 12222 122223222223322 3478999999999997
Q ss_pred cC-ccccccCCceeeCCCcEEeC-CCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhc
Q psy2951 834 LN-TNYLDGKGVELNGQKAVVVN-EYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMV 904 (1466)
Q Consensus 834 p~-~~~~~~~gl~~~~~G~i~vd-~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~ 904 (1466)
.. ....++++++.|+++.|.+. +.+.|++++|||+|||....... ..|+++|+.+|+.+-
T Consensus 2055 gpe~~~~~~~~~~~d~rsni~t~~~~y~t~v~~vfaagdcrrgqslv-----------vwai~egrq~a~~vd 2116 (2142)
T KOG0399|consen 2055 GPEKSVIEQLNLKTDPRSNILTPKDSYSTDVAKVFAAGDCRRGQSLV-----------VWAIQEGRQAARQVD 2116 (2142)
T ss_pred CcchhhhhhcCcccCccccccCCCccccccccceeecccccCCceEE-----------EEEehhhhHHHHHHH
Confidence 54 44678889999988777664 66899999999999998776554 469999999998873
|
|
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-20 Score=229.68 Aligned_cols=267 Identities=15% Similarity=0.145 Sum_probs=165.9
Q ss_pred CCCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCC--C-------------------------CCccchhc
Q psy2951 591 SSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY--D-------------------------RVKLSKQL 643 (1466)
Q Consensus 591 ~~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~--~-------------------------~~~~~~~~ 643 (1466)
.+.+.++|+|||||||||+||++|++.|++ |+++|+....+. . ...+....
T Consensus 379 ~~~tgKKVaVVGaGPAGLsAA~~La~~Gh~--Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGIp~ 456 (1028)
T PRK06567 379 KEPTNYNILVTGLGPAGFSLSYYLLRSGHN--VTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGITV 456 (1028)
T ss_pred CCCCCCeEEEECcCHHHHHHHHHHHhCCCe--EEEEccccccccccccccccchhhhhccchhhhccccCCcccccCccc
Confidence 345789999999999999999999999999 777776432111 1 00010000
Q ss_pred ccCcccccccCHhHhhhC--CcEEEEceEEEEeccccccEEEccCCCEEecCEEEEcCCC-CCCcCCCCCCCC--cEEEe
Q psy2951 644 DIKADSILLRTEEFYKDN--DIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGS-SPRTISQADGVN--KVFYL 718 (1466)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~--gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~d~lviAtG~-~~~~~~~~~g~~--~~~~~ 718 (1466)
.. +.+.... ...+.+. +++++.|..+. . .++.++-....||+||||||+ +|+.+++| |.+ +++..
T Consensus 457 R~-~k~~l~~-i~~il~~g~~v~~~~gv~lG-~------dit~edl~~~gyDAV~IATGA~kpr~L~IP-Geda~GV~sA 526 (1028)
T PRK06567 457 RW-DKNNLDI-LRLILERNNNFKYYDGVALD-F------NITKEQAFDLGFDHIAFCIGAGQPKVLDIE-NFEAKGVKTA 526 (1028)
T ss_pred cc-hHHHHHH-HHHHHhcCCceEEECCeEEC-c------cCCHHHHhhcCCCEEEEeCCCCCCCCCCCC-CccCCCeEEH
Confidence 00 1111111 1122223 46666676431 1 122222234679999999999 79999999 876 55544
Q ss_pred cCHHHHHhhcc--------cCCCCCcEEEECCChHHHHHHHHHhc-----------------------------------
Q psy2951 719 RTVEDANNIAP--------HITPESNVVVIGSSFIGMEAAAFCAS----------------------------------- 755 (1466)
Q Consensus 719 ~~~~~~~~~~~--------~~~~~~~vvVvG~G~~g~e~A~~l~~----------------------------------- 755 (1466)
.++....+... ....+++|+|||||++|+|+|.....
T Consensus 527 ~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~eia~~f~~h~r~ 606 (1028)
T PRK06567 527 SDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEFIAHAKL 606 (1028)
T ss_pred HHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccHHHHHHHHHHHHh
Confidence 33222211111 01236899999999999999983221
Q ss_pred ----------------cCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECC---
Q psy2951 756 ----------------KVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLD--- 816 (1466)
Q Consensus 756 ----------------~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~--- 816 (1466)
.|. |++++|....-++....+ .+.+ +...+.||+|+.+..+.+|..++++++..+++.
T Consensus 607 ~g~~~~~~~v~~l~~~~G~-VtIvYRr~~~empA~~~~-~eEv-~~A~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~ 683 (1028)
T PRK06567 607 FKEAKNNEELRKVFNKLGG-ATVYYRGRLQDSPAYKLN-HEEL-IYALALGVDFKENMQPLRINVDKYGHVESVEFENRN 683 (1028)
T ss_pred hcchhccchhhhhhccCCc-eEEEecCChhhCCCCCCC-HHHH-HHHHHcCcEEEecCCcEEEEecCCCeEEEEEEEEEe
Confidence 222 999999875444432101 1222 234567999999999999975556666644332
Q ss_pred ---------------------------CCcEEecCEEEEccccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEec
Q psy2951 817 ---------------------------NGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGG 869 (1466)
Q Consensus 817 ---------------------------~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~G 869 (1466)
...+|+||.||+|+|..||+.+.. .+..+-++.+++|+.
T Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~~~-------------~~~s~~~d~~~~f~G- 749 (1028)
T PRK06567 684 RHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQFDE-------------DKYSYFGDCNPKYSG- 749 (1028)
T ss_pred cccccccccccccccccCCcCcccCCCccccccCCEEEEecccCCcccccc-------------cccccccCCCCcccc-
Confidence 114789999999999999987631 111233455666665
Q ss_pred cccccCCcccCCceeeeccHHHHHHHHHHHHHHhc
Q psy2951 870 DIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMV 904 (1466)
Q Consensus 870 D~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~ 904 (1466)
+...|+.+|+.++.+|.
T Consensus 750 ------------------tvv~A~as~k~~~~~i~ 766 (1028)
T PRK06567 750 ------------------SVVKALASSKEGYDAIN 766 (1028)
T ss_pred ------------------HHHHHHHHHHhHHHHHH
Confidence 23589999999999995
|
|
| >KOG3851|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.7e-20 Score=193.23 Aligned_cols=295 Identities=15% Similarity=0.161 Sum_probs=204.7
Q ss_pred CCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhc-cCcccccccChhhhccCCcEEEcCCe
Q psy2951 1063 SGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD-IKADSILLRTEEFYKDNDIHVIKGKK 1141 (1466)
Q Consensus 1063 ~~~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~ 1141 (1466)
.+...+++|||||.+|+++|..+.++-..++|-++|.+.++.|++...-.-.. .+.+. ..+....+-..+..++.. +
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~-srr~~a~liP~~a~wi~e-k 113 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDS-SRRKQASLIPKGATWIKE-K 113 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhh-ccCcccccccCCcHHHHH-H
Confidence 34567899999999999999999776556899999999998888654211111 11111 111111222235555553 4
Q ss_pred EEEeecCCCCeEEecCCcEEecCeEEEecCCCCCcCCCCCCCC------cEEEecCHHHHHh---hhcccCCCCeEEEEc
Q psy2951 1142 IISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN------KVFYLRTVEDANN---IAPHITPESNVVVIG 1212 (1466)
Q Consensus 1142 v~~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~------~v~~~~~~~~~~~---l~~~~~~~~~vvVvG 1212 (1466)
|..+ +|++.+|.+++|++|+||+||||+|..-+...|+ |+. +|....+....++ .....+.|..+.---
T Consensus 114 v~~f-~P~~N~v~t~gg~eIsYdylviA~Giql~y~~Ik-Gl~Eal~tP~VcSnYSpkyvdk~y~~~~~fk~GNAIfTfP 191 (446)
T KOG3851|consen 114 VKEF-NPDKNTVVTRGGEEISYDYLVIAMGIQLDYGKIK-GLVEALDTPGVCSNYSPKYVDKVYKELMNFKKGNAIFTFP 191 (446)
T ss_pred HHhc-CCCcCeEEccCCcEEeeeeEeeeeeceeccchhc-ChHhhccCCCcccccChHHHHHHHHHHHhccCCceEEecC
Confidence 8899 9999999999999999999999999987777776 654 5554444444333 333445566666666
Q ss_pred CCHHHHH---------HHHHHhcCCC--eEEEEcCCCcCCccccc-HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCc
Q psy2951 1213 SSFIGME---------AAAFCASKVK--SVTVVGRGAVPFQESLG-KEVGERITKLFESKGVKFVMKANVSSFEKNEKND 1280 (1466)
Q Consensus 1213 ~g~~g~e---------~a~~l~~~g~--~v~vv~~~~~~~~~~~~-~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~ 1280 (1466)
++.+-|. .-..+|++|. ++.+++... |+..++ ...++.|.+..++++|++.+.....++. ..+..
T Consensus 192 ntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Ts--l~~iFgVk~Y~~AL~k~~~~rni~vn~krnLiEV~-~~~~~ 268 (446)
T KOG3851|consen 192 NTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNTS--LPTIFGVKHYADALEKVIQERNITVNYKRNLIEVR-TNDRK 268 (446)
T ss_pred CCccccCCCchhhhhhhHHHHHHhCccccccEEEecC--ccceecHHHHHHHHHHHHHhcceEeeeccceEEEe-ccchh
Confidence 6555443 2246788876 466666544 334556 6678889999999999999999999987 44433
Q ss_pred EEEEEcCC-C--CeeecCEEEEeeccccCccccccCCceeeCCCeEEeC-CCcccc-CCCEEEecccccCCCccCCCcee
Q psy2951 1281 VTAANLDN-G--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVN-EYLETN-VPGVYAGGDIAYAPLHSFYNKNA 1355 (1466)
Q Consensus 1281 ~~~v~l~~-g--~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd-~~~~t~-~~~v~a~GD~a~~p~~~~~~~~~ 1355 (1466)
.+.-.|++ | ++++++++.+.....+. +.++.+.+. |.-||+.|| .++|+. +||||++|||...|+..+.
T Consensus 269 AvFe~L~kPG~t~ei~yslLHv~Ppms~p-e~l~~s~~a-dktGfvdVD~~TlQs~kypNVFgiGDc~n~PnsKTa---- 342 (446)
T KOG3851|consen 269 AVFENLDKPGVTEEIEYSLLHVTPPMSTP-EVLANSDLA-DKTGFVDVDQSTLQSKKYPNVFGIGDCMNLPNSKTA---- 342 (446)
T ss_pred hHHHhcCCCCceeEEeeeeeeccCCCCCh-hhhhcCccc-CcccceecChhhhccccCCCceeeccccCCCchhhH----
Confidence 32223444 5 57899999987666555 567777764 667999999 678875 9999999999999987632
Q ss_pred eeecHHHHHHHHHHHHHHhc
Q psy2951 1356 SIGHYQLAQYHGRIAALNMV 1375 (1466)
Q Consensus 1356 ~~~~~~~A~~qa~~aa~~i~ 1375 (1466)
..+..|..++-+|+.
T Consensus 343 -----AAvaaq~~vv~~nl~ 357 (446)
T KOG3851|consen 343 -----AAVAAQSPVVDKNLT 357 (446)
T ss_pred -----HHHHhcCchhhhhHH
Confidence 455667777777766
|
|
| >KOG2755|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-19 Score=183.73 Aligned_cols=267 Identities=21% Similarity=0.351 Sum_probs=182.7
Q ss_pred cEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCC--CCCCCCchhhccCcccccccCh---hhhccCCcEEEcCCeE
Q psy2951 1068 TFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP--YDRVKLSKQLDIKADSILLRTE---EFYKDNDIHVIKGKKI 1142 (1466)
Q Consensus 1068 ~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~v 1142 (1466)
+.+|||||+||.++|..|+..-...+|.|+...+..- -..-+.++++. .+..+.. +...+.. + ..+. |
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vksvtn~~~i~~yle----kfdv~eq~~~elg~~f~-~-~~~~-v 73 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNYQKIGQYLE----KFDVKEQNCHELGPDFR-R-FLND-V 73 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhHHHHHHHHH----hcCccccchhhhcccHH-H-HHHh-h
Confidence 3689999999999999999998888999998765311 00011222221 1111110 1111111 1 2233 6
Q ss_pred EEeecCCCCeEEecCCcEEecCeEEEecCCCCCcCCCCCCCC-cEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHH
Q psy2951 1143 ISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA 1221 (1466)
Q Consensus 1143 ~~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~-~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a 1221 (1466)
..+ +...+.+.+.+|..+.|++|+++||.+|...- . |.+ .+...|+.+.++.++..+.+.|+|+|+|.|-+++|++
T Consensus 74 ~~~-~s~ehci~t~~g~~~ky~kKOG~tg~kPklq~-E-~~n~~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~El~ 150 (334)
T KOG2755|consen 74 VTW-DSSEHCIHTQNGEKLKYFKLCLCTGYKPKLQV-E-GINPKIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELT 150 (334)
T ss_pred hhh-ccccceEEecCCceeeEEEEEEecCCCcceee-c-CCCceEEEEecCcHHHHHHHHHhhcceEEEEecCchhHHHH
Confidence 777 88889999999999999999999999998752 2 334 6777889999999999999999999999999999999
Q ss_pred HHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCC----------------------------------------
Q psy2951 1222 AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKG---------------------------------------- 1261 (1466)
Q Consensus 1222 ~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~g---------------------------------------- 1261 (1466)
..+. +.+|++....+......+++.+.+++...++..+
T Consensus 151 yElk--~~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~q~iea~pk~~~n~vg~algpDw~s~~dl~g 228 (334)
T KOG2755|consen 151 YELK--ILNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHFQYIEAFPKCEENNVGPALGPDWHSQIDLQG 228 (334)
T ss_pred HHhh--cceeEEEecchhhhhcccCccHHHHhHhhhhcccccchhhhhhhhhhhhcCcccccCcccccCcchhhhccccc
Confidence 9885 5688888777766665666666655544441100
Q ss_pred --------cEEEcCceEEEEEecCCCcEEEEEcCCC--CeeecCEEEEeeccccCccccccCCceeeCCCeEEeCCCccc
Q psy2951 1262 --------VKFVMKANVSSFEKNEKNDVTAANLDNG--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLET 1331 (1466)
Q Consensus 1262 --------v~~~~~~~v~~i~~~~~g~~~~v~l~~g--~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t 1331 (1466)
+.+..+.-+....+.+...+.......| .++.||.++.|+|+.||.+|+-..-++...+|++.||+.|+|
T Consensus 229 ~~eseer~l~~l~~~~~~~~d~~d~~sv~~~~~ek~~~~qlt~d~ivSatgvtpn~e~~~~~~lq~~edggikvdd~m~t 308 (334)
T KOG2755|consen 229 ISESENRSLTYLRNCVITSTDTSDNLSVHYMDKEKMADNQLTCDFIVSATGVTPNSEWAMNKMLQITEDGGIKVDDAMET 308 (334)
T ss_pred chhhhhhhhHHhhhheeeeccchhhcccccccccccccceeeeeEEEeccccCcCceEEecChhhhccccCeeehhhccc
Confidence 0000011111111011111111111112 367899999999999999987777788888889999999999
Q ss_pred cCCCEEEecccccCC
Q psy2951 1332 NVPGVYAGGDIAYAP 1346 (1466)
Q Consensus 1332 ~~~~v~a~GD~a~~p 1346 (1466)
+.|++||+||++...
T Consensus 309 slpdvFa~gDvctt~ 323 (334)
T KOG2755|consen 309 SLPDVFAAGDVCTTT 323 (334)
T ss_pred cccceeeecceeccC
Confidence 999999999988743
|
|
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.6e-19 Score=214.03 Aligned_cols=283 Identities=17% Similarity=0.264 Sum_probs=159.6
Q ss_pred CcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCC------------------CCchhhccCcccccc-----
Q psy2951 1067 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV------------------KLSKQLDIKADSILL----- 1123 (1466)
Q Consensus 1067 ~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~------------------~l~~~~~~~~~~~~~----- 1123 (1466)
++|+|||||++||++|+.|++.|+ +++++|+++..+.-.. ..++... ...+++.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~--~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~-~fsdfp~p~~~p 78 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGL--EVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMM-AFSDFPFPEDYP 78 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT---EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGS-CCTTS-HCCCCS
T ss_pred CEEEEECccHHHHHHHHHHHHCCC--CCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHh-cCCCcCCCCCCC
Confidence 689999999999999999999999 9999999987652211 1222221 0111111
Q ss_pred ----------cChhhhccCCc--EEEcCCeEEEeecCC-------CCeEEecC-Cc--EEecCeEEEecCC--CCCcCC-
Q psy2951 1124 ----------RTEEFYKDNDI--HVIKGKKIISDSELN-------EKKIKLQD-GT--SIDFTKIYLATGS--SPRTIS- 1178 (1466)
Q Consensus 1124 ----------~~~~~~~~~~v--~~~~~~~v~~i~d~~-------~~~v~~~~-g~--~~~yd~lvlAtG~--~~~~~~- 1178 (1466)
....+.+.+++ .++++++|+++ ... ...|++.+ |. +..||+||+|||. .|+.|.
T Consensus 79 ~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v-~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~ 157 (531)
T PF00743_consen 79 DFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSV-ERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEP 157 (531)
T ss_dssp SSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEE-EEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB---
T ss_pred CCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEe-eeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChh
Confidence 11224444555 58899999999 532 23566653 32 3569999999996 788774
Q ss_pred -CCCCCC----cEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcC-Cccc--------
Q psy2951 1179 -QADGVN----KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP-FQES-------- 1244 (1466)
Q Consensus 1179 -~~~g~~----~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~-~~~~-------- 1244 (1466)
+| |++ .+.+.+++.+...++ +|+|+|||+|.+|+++|..+.+...+|++..|.... +++.
T Consensus 158 ~~~-G~e~F~G~i~HS~~yr~~~~f~-----gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~D 231 (531)
T PF00743_consen 158 SFP-GLEKFKGEIIHSKDYRDPEPFK-----GKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPFD 231 (531)
T ss_dssp --C-TGGGHCSEEEEGGG--TGGGGT-----TSEEEEESSSHHHHHHHHHHTTTSCCEEEECC-----------------
T ss_pred hhh-hhhcCCeeEEccccCcChhhcC-----CCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccccccccccccccccc
Confidence 78 887 466666666655444 999999999999999999999999999998877522 1111
Q ss_pred --------------ccHHHHHHHH---------------------------------HHHHhCCcEEEcCceEEEEEecC
Q psy2951 1245 --------------LGKEVGERIT---------------------------------KLFESKGVKFVMKANVSSFEKNE 1277 (1466)
Q Consensus 1245 --------------~~~~~~~~l~---------------------------------~~~~~~gv~~~~~~~v~~i~~~~ 1277 (1466)
++..+.+++. ..+....|++. ..|.+++ +
T Consensus 232 ~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk--~~I~~~~--~ 307 (531)
T PF00743_consen 232 MVFSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVK--PDIKRFT--E 307 (531)
T ss_dssp -------------------------------------------------------------------E--E-EEEE---S
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccc--c
Confidence 1111111111 11111112221 2355554 2
Q ss_pred CCcEEEEEcCCCCee-ecCEEEEeeccccCccccccCCceeeCCCeEEeCCC-ccc--cCCCEEEecccccCCCccCCCc
Q psy2951 1278 KNDVTAANLDNGTTI-PADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEY-LET--NVPGVYAGGDIAYAPLHSFYNK 1353 (1466)
Q Consensus 1278 ~g~~~~v~l~~g~~i-~~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~-~~t--~~~~v~a~GD~a~~p~~~~~~~ 1353 (1466)
+ +|.+.||+++ ++|.||+|||+....+||.+.-+....+ .+..-.+ +-. .+|.+..+|=+... .
T Consensus 308 ~----~v~F~DGs~~e~vD~II~~TGY~~~fpFL~~~~~~~~~~-~~~LYk~vfp~~~~~ptLafIG~~~~~-g------ 375 (531)
T PF00743_consen 308 N----SVIFEDGSTEEDVDVIIFCTGYKFSFPFLDESLIKVDDN-RVRLYKHVFPPNLDHPTLAFIGLVQPF-G------ 375 (531)
T ss_dssp S----EEEETTSEEEEE-SEEEE---EE---TTB-TTTT-S-SS-SSSEETTTEETETTSTTEEESS-SBSS-S------
T ss_pred c----ccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccc-c------
Confidence 2 4789999876 7999999999999999998765544432 1211122 211 35788888854321 1
Q ss_pred eeeeecHHHHHHHHHHHHHHhcCCCC
Q psy2951 1354 NASIGHYQLAQYHGRIAALNMVEKKT 1379 (1466)
Q Consensus 1354 ~~~~~~~~~A~~qa~~aa~~i~g~~~ 1379 (1466)
..+..+..||+.+|+-+.|...
T Consensus 376 ----~~fp~~ElQArw~a~v~sG~~~ 397 (531)
T PF00743_consen 376 ----SIFPIFELQARWAARVFSGRVK 397 (531)
T ss_dssp -----HHHHHHHHHHHHHHHHTTSS-
T ss_pred ----cccccccccccccccccccccc
Confidence 1247899999999999998654
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.3e-19 Score=193.81 Aligned_cols=359 Identities=20% Similarity=0.281 Sum_probs=227.9
Q ss_pred eCCCCCCCcccCCceec--CCEEEcc----CCCceEECCCCeeecCCCCCCCCeEEEEEEcCeEEEEEcccch-------
Q psy2951 511 GTKCSHYGAPLVKGSLG--DGRVRCP----WHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQARKDE------- 577 (1466)
Q Consensus 511 ~~~C~H~~~~l~~g~~~--~~~~~Cp----~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~~~~~~~~~------- 577 (1466)
.-.|...|..+....+. +..++-. .|...|.+. +...--..++++..|++..+..+
T Consensus 36 ~~~CSd~gqe~i~~dikeldrvVvaACsPr~he~~Frln-----------~y~~E~aniREqcswvH~~dAtekA~dllr 104 (622)
T COG1148 36 PYMCSDPGQEMIKKDIKELDRVVVAACSPRLHEPTFRLN-----------PYYLEIANIREQCSWVHMDDATEKAKDLLR 104 (622)
T ss_pred eeccCchhHHHHHHHHHHhhheEEEecCCcccCCceeeC-----------HHHhhhhhHhhcceeeccchHHHHHHHHHH
Confidence 34588888877554443 3344433 377777621 11122233566788888766221
Q ss_pred --hccccccccccccCCCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcccC---cccccc
Q psy2951 578 --LKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIK---ADSILL 652 (1466)
Q Consensus 578 --~~~~~~~~~~~~~~~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 652 (1466)
+.+.+..+++........++++|||||+||++||+.|++.|++ ++++|+++.+++....+.+.+... ..-+..
T Consensus 105 ~avakar~le~le~~~~~v~~svLVIGGGvAGitAAl~La~~G~~--v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP 182 (622)
T COG1148 105 MAVAKARKLEPLEEIKVEVSKSVLVIGGGVAGITAALELADMGFK--VYLVEKEPSIGGRMAKLNKTFPTNDCSICILAP 182 (622)
T ss_pred HHHHHHhhcCChhhHHHhhccceEEEcCcHHHHHHHHHHHHcCCe--EEEEecCCcccccHHhhhccCCCcccchhhccc
Confidence 1111133344444455679999999999999999999999998 999999999998877777666522 222333
Q ss_pred cCHhHhhhCCcEEEEceEEEEeccc-cccEEE------------------------------------------------
Q psy2951 653 RTEEFYKDNDIHVIKGKKIISDSEL-NEKKIK------------------------------------------------ 683 (1466)
Q Consensus 653 ~~~~~~~~~gv~~~~~~~v~~i~~~-~~~~v~------------------------------------------------ 683 (1466)
.+.+.....+|++++.++|..+... .+++|+
T Consensus 183 ~m~~v~~hp~i~l~TyaeV~ev~G~vGnF~vki~kkpryVdd~CtgCg~C~~vCPve~~nefn~Gl~~~kAiy~p~~qaV 262 (622)
T COG1148 183 KMVEVSNHPNIELITYAEVEEVSGSVGNFTVKIEKKPRYVDDKCTGCGACSEVCPVEVPNEFNEGLGKRKAIYIPFPQAV 262 (622)
T ss_pred hhhhhccCCceeeeeeeeeeeecccccceEEEEecccccccccccccccccccCCcccCcccccccccceeeeccchhhc
Confidence 3444444558888888888775210 011111
Q ss_pred ---------------------------ccC-C--CEEecCEEEEcCCCCCCcCCCCC--CCC---cEEEecCHHHHHhhc
Q psy2951 684 ---------------------------LQD-G--TSIDFTKIYLATGSSPRTISQAD--GVN---KVFYLRTVEDANNIA 728 (1466)
Q Consensus 684 ---------------------------~~~-~--~~~~~d~lviAtG~~~~~~~~~~--g~~---~~~~~~~~~~~~~~~ 728 (1466)
.+. + -+++..++|+|||-+++.+.-.. |.. ++.+. .+.+++.
T Consensus 263 p~~~~Id~~~c~~c~~C~~ac~~~av~~~q~~e~ve~~vGaIIvAtGy~~~Da~~k~EyGYG~~~nVIT~---lElErml 339 (622)
T COG1148 263 PLNYNIDPKHCIECGLCEKACPNEAVDLNQEPEEVELEVGAIIVATGYKPFDATRKEEYGYGKYPNVITN---LELERML 339 (622)
T ss_pred ccccccChhhhccchhhhhcCCccccccCCCCcEEEEEeceEEEEccccccCcchhhhcCCCCCcchhhH---HHHHHHh
Confidence 011 1 15778899999998877654221 322 44332 2223222
Q ss_pred cc-------------CCCCCcEEEE---CCCh--------------HHHHHHHHHhcc--CCeEEEEeecCccCccccCH
Q psy2951 729 PH-------------ITPESNVVVI---GSSF--------------IGMEAAAFCASK--VKSVTVVGRGAVPFQESLGK 776 (1466)
Q Consensus 729 ~~-------------~~~~~~vvVv---G~G~--------------~g~e~A~~l~~~--g~~V~lv~~~~~~~~~~~~~ 776 (1466)
.. -.++|+|+.| |+-. .++..|..++++ ..+|++.+.+-+. ++.
T Consensus 340 ~~~GPT~GkvlrpSdg~~pKrVaFIqCVGSRD~~~~n~YCSrvCCm~slKqA~~Ike~~Pd~~v~I~YmDiRa----fG~ 415 (622)
T COG1148 340 NPNGPTGGKVLRPSDGKPPKRVAFIQCVGSRDFQVGNPYCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDIRA----FGK 415 (622)
T ss_pred ccCCCCCceEEecCCCCCCceEEEEEEecCcCcccCChhhHHHHHHHHHhhhhhhhhcCCCcceeEEEEEeec----cCc
Confidence 10 1357888886 5543 234455566655 5789999988643 445
Q ss_pred HHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCC---C--cEEecCEEEEccccccCcc---ccccCCceeeC
Q psy2951 777 EVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDN---G--TTIPADLVIVGIGTVLNTN---YLDGKGVELNG 848 (1466)
Q Consensus 777 ~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~---g--~~i~~D~vi~a~G~~p~~~---~~~~~gl~~~~ 848 (1466)
...+++.+.-++.||+|+.+. +.+|.+.++++ ..|...| | .++++|+|++++|+.|... +.+.+||+.++
T Consensus 416 ~yEefY~~~Q~~~gV~fIRGr-vaei~e~p~~~-l~V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~ 493 (622)
T COG1148 416 DYEEFYVRSQEDYGVRFIRGR-VAEIAEFPKKK-LIVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDE 493 (622)
T ss_pred cHHHHHHhhhhhhchhhhcCC-hHHheeCCCCe-eEEEEEeccCccceecccceEEEeeccccCcchHHHHHhcCcccCC
Confidence 555666666668899999765 66676555555 2343333 3 3789999999999998643 56778999999
Q ss_pred CCcEEeC-CCC---CCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHh
Q psy2951 849 QKAVVVN-EYL---ETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNM 903 (1466)
Q Consensus 849 ~G~i~vd-~~~---~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i 903 (1466)
+||+... +.+ +|+.++||.+| |+..|... +.++.||..||...
T Consensus 494 ~gF~k~~hPkl~pv~s~~~GIflAG-~aqgPkdI-----------~~siaqa~aAA~kA 540 (622)
T COG1148 494 DGFLKEAHPKLRPVDSNRDGIFLAG-AAQGPKDI-----------ADSIAQAKAAAAKA 540 (622)
T ss_pred CCccccCCCCcccccccCCcEEEee-cccCCccH-----------HHHHHHhHHHHHHH
Confidence 9999886 444 46899999999 44444433 47888888777654
|
|
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-18 Score=209.06 Aligned_cols=287 Identities=17% Similarity=0.241 Sum_probs=161.1
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCc------------------cchhc--------c----
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK------------------LSKQL--------D---- 644 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~------------------~~~~~--------~---- 644 (1466)
+++|+|||||++||++|..|.+.|++ ++++|+++.+++.... .++.. .
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~--~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p 78 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLE--VTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYP 78 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-E--EEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCC--CeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCC
Confidence 47999999999999999999999987 7788887665533210 00000 0
Q ss_pred --cCcccccccCHhHhhhCCc--EEEEceEEEEeccc------cccEEEccCC---CEEecCEEEEcCC--CCCCcCC--
Q psy2951 645 --IKADSILLRTEEFYKDNDI--HVIKGKKIISDSEL------NEKKIKLQDG---TSIDFTKIYLATG--SSPRTIS-- 707 (1466)
Q Consensus 645 --~~~~~~~~~~~~~~~~~gv--~~~~~~~v~~i~~~------~~~~v~~~~~---~~~~~d~lviAtG--~~~~~~~-- 707 (1466)
....++..++..+.+++++ .++++++|.++... ..+.|++.++ ++..||+||+||| +.|+.|.
T Consensus 79 ~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~ 158 (531)
T PF00743_consen 79 DFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPS 158 (531)
T ss_dssp SSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB----
T ss_pred CCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhh
Confidence 1234566667777777777 48889999988321 2356766543 2456999999999 5788885
Q ss_pred CCCCCC----cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccC--------
Q psy2951 708 QADGVN----KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLG-------- 775 (1466)
Q Consensus 708 ~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~-------- 775 (1466)
+| |++ .+++.++..+... .++|+|+|||+|++|+|+|..|++.+++|++..|+.....+...
T Consensus 159 ~~-G~e~F~G~i~HS~~yr~~~~-----f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~D~ 232 (531)
T PF00743_consen 159 FP-GLEKFKGEIIHSKDYRDPEP-----FKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPFDM 232 (531)
T ss_dssp -C-TGGGHCSEEEEGGG--TGGG-----GTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC------------------
T ss_pred hh-hhhcCCeeEEccccCcChhh-----cCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecccccccccccccccccc
Confidence 77 876 4555555544332 24999999999999999999999999999999888643222111
Q ss_pred ---------------HHHHHHH-HHHHH------hcCcEEE------------------------ccceEEEEEecCCCc
Q psy2951 776 ---------------KEVGERI-TKLFE------SKGVKFV------------------------MKANVSSFEKNEKND 809 (1466)
Q Consensus 776 ---------------~~~~~~~-~~~l~------~~gv~~~------------------------~~~~v~~i~~~~~~~ 809 (1466)
..+...+ .+.+. ..|+.-. ....|.++++
T Consensus 233 ~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk~~I~~~~~----- 307 (531)
T PF00743_consen 233 VFSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVKPDIKRFTE----- 307 (531)
T ss_dssp ------------------------------------------------------------------EE-EEEE-S-----
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----
Confidence 0000110 00110 0111000 0112333331
Q ss_pred eEEEECCCCcEE-ecCEEEEccccccCccccccCCceeeCCCcEEeCCCC---CCCCCCeEEeccccccCCcccCCceee
Q psy2951 810 VTAANLDNGTTI-PADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYL---ETNVPGVYAGGDIAYAPLHSFYNKNAS 885 (1466)
Q Consensus 810 ~~~v~~~~g~~i-~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~---~t~~~~iya~GD~~~~~~~~~~~~~~~ 885 (1466)
..+.+.||+++ ++|.||+|||++...+++++.-+...++ .+..-.++ ....|.+..+|=+.. ..
T Consensus 308 -~~v~F~DGs~~e~vD~II~~TGY~~~fpFL~~~~~~~~~~-~~~LYk~vfp~~~~~ptLafIG~~~~-~g--------- 375 (531)
T PF00743_consen 308 -NSVIFEDGSTEEDVDVIIFCTGYKFSFPFLDESLIKVDDN-RVRLYKHVFPPNLDHPTLAFIGLVQP-FG--------- 375 (531)
T ss_dssp -SEEEETTSEEEEE-SEEEE---EE---TTB-TTTT-S-SS-SSSEETTTEETETTSTTEEESS-SBS-SS---------
T ss_pred -cccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccc-cc---------
Confidence 15678899875 6999999999999988887654443322 22121221 123578999984421 11
Q ss_pred eccHHHHHHHHHHHHHHhccCC
Q psy2951 886 IGHYQLAQYHGRIAALNMVEKK 907 (1466)
Q Consensus 886 ~~~~~~A~~~g~~aA~~i~~~~ 907 (1466)
.....+..|++.+|+-+.|+.
T Consensus 376 -~~fp~~ElQArw~a~v~sG~~ 396 (531)
T PF00743_consen 376 -SIFPIFELQARWAARVFSGRV 396 (531)
T ss_dssp --HHHHHHHHHHHHHHHHTTSS
T ss_pred -ccccccccccccccccccccc
Confidence 123579999999999988764
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.5e-18 Score=200.77 Aligned_cols=320 Identities=23% Similarity=0.265 Sum_probs=211.1
Q ss_pred eeeec-cCcchhhhhhhhhhhcccCcc---ccccCCCCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCC--CC
Q psy2951 8 KVTIQ-NDDSVVVQARKDELKNKKRKL---PMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENF--LP 81 (1466)
Q Consensus 8 ~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~--~~ 81 (1466)
.|+.. ++.|++|..+.++......++ +..+..+.+.++|+|||||||||+||..|++.|++|++++..+... +.
T Consensus 84 ~cv~~~~~~~v~i~~le~~i~d~~~~~g~i~~~~~~~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~ 163 (457)
T COG0493 84 ACVLGIEELPVNIGALERAIGDKADREGWIPGELPGSRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLL 163 (457)
T ss_pred eeeeccCCCchhhhhHHHHHhhHHHHhCCCCCCCCCCCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEE
Confidence 34443 689999999999888764432 2222223344899999999999999999999999999976555421 12
Q ss_pred CCCCccchhcccCcccccccChhhhhcCCeEEEeCceEEEeccccccEEEecCCcEEecCEEEEccCCC-CCCCCCCCCC
Q psy2951 82 YDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSS-PRTISQADGV 160 (1466)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~~~~~d~lviAtG~~-~~~~~~~~~~ 160 (1466)
|..+.+ ....++..+..+.+++.|++|+.+..+-... +++.- .-.||.++++||+. |+.+ .+++.
T Consensus 164 yGIP~~-----kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~i-------t~~~L-~~e~Dav~l~~G~~~~~~l-~i~g~ 229 (457)
T COG0493 164 YGIPDF-----KLPKDILDRRLELLERSGVEFKLNVRVGRDI-------TLEEL-LKEYDAVFLATGAGKPRPL-DIPGE 229 (457)
T ss_pred ecCchh-----hccchHHHHHHHHHHHcCeEEEEcceECCcC-------CHHHH-HHhhCEEEEeccccCCCCC-CCCCc
Confidence 222211 2234566677788889999999998764222 11111 23479999999985 4433 34443
Q ss_pred C--cEEEecCHHHHH---hhc------ccCCCCCcEEEECCCHhHHHHHHHHhhCCC-EEEEEeecCcc-cccccCHHHH
Q psy2951 161 N--KVFYLRTVEDAN---NIA------PHITPESNVVVIGSSFIGMEAAAFCASKVK-SVTVVGRGAVP-FQESLGKEVG 227 (1466)
Q Consensus 161 ~--~~~~~~~~~~~~---~~~------~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~-~~~~~~~~~~ 227 (1466)
+ ++.......... .+. .....+|+|+|||+|.++++++....+.|. .|+.+++...- -....+....
T Consensus 230 d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~~~ 309 (457)
T COG0493 230 DAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWAA 309 (457)
T ss_pred CCCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEeccccccccCCcccccch
Confidence 2 332211111111 111 011134899999999999999999889886 68877532211 0001111122
Q ss_pred HHHHHHHHhCCcEEEcCceEEEEEecCCCCeEEEEcC-------------------CC--cEEeccEEEEeeccccCccc
Q psy2951 228 ERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLD-------------------NG--TTIPADLVIVGIGTVLNTNY 286 (1466)
Q Consensus 228 ~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~~-------------------~g--~~i~~D~Vi~a~G~~p~~~~ 286 (1466)
....+...+.|+.........++..+++|++..+.+. .| ..+++|+|+.|+|+.++...
T Consensus 310 ~~~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~ 389 (457)
T COG0493 310 QLEVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATD 389 (457)
T ss_pred hhhhhhhhhcCCcccccCCceeEeecCCCcEeeeecccccccCcccccccccCccccCceEEehHHHHHHHhccCCCccc
Confidence 3344556677888888888888887666766544321 12 35789999999999887543
Q ss_pred -c-ccCCceecCCccEEECCCC-CcCCCCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhc
Q psy2951 287 -L-DGKGVELNGQKAVVVNEYL-ETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMV 352 (1466)
Q Consensus 287 -l-~~~gl~~~~~g~i~vd~~~-~t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 352 (1466)
. ...++..+..|.+.+++.+ +|+.|++||.||+.... ..+..|+.+|+.+|+.+-
T Consensus 390 ~~~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g~-----------~~vv~ai~eGr~aak~i~ 447 (457)
T COG0493 390 GLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGA-----------ALVVWAIAEGREAAKAID 447 (457)
T ss_pred ccccccccccCCCCceecccccccccCCCeeeCceeccch-----------hhhhhHHhhchHHHHhhh
Confidence 2 2335778888999999998 89999999999998743 345679999999998775
|
|
| >KOG2755|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-18 Score=175.00 Aligned_cols=263 Identities=21% Similarity=0.338 Sum_probs=178.3
Q ss_pred eEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCC--Cccc---hhcc---cCcccccccCHhHhhhCCcEEEEc
Q psy2951 597 TFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR--VKLS---KQLD---IKADSILLRTEEFYKDNDIHVIKG 668 (1466)
Q Consensus 597 ~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~--~~~~---~~~~---~~~~~~~~~~~~~~~~~gv~~~~~ 668 (1466)
+.+|||||.||.+||..|+.+-++.+|+++...+...--. .... ..+. .+..++....+.++ +
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vksvtn~~~i~~ylekfdv~eq~~~elg~~f~~~~---------~ 71 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNYQKIGQYLEKFDVKEQNCHELGPDFRRFL---------N 71 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhHHHHHHHHHhcCccccchhhhcccHHHHH---------H
Confidence 4689999999999999999999988999998875432100 0011 1111 01111112222111 1
Q ss_pred eEEEEeccccccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCC-cEEEecCHHHHHhhcccCCCCCcEEEECCChHHH
Q psy2951 669 KKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGM 747 (1466)
Q Consensus 669 ~~v~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~ 747 (1466)
. |... +...+.+.+.+|..+.|++|+++||++|..-.- |.+ .+...++.+.+..++..+.+.|+|.|+|.|-+++
T Consensus 72 ~-v~~~-~s~ehci~t~~g~~~ky~kKOG~tg~kPklq~E--~~n~~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~ 147 (334)
T KOG2755|consen 72 D-VVTW-DSSEHCIHTQNGEKLKYFKLCLCTGYKPKLQVE--GINPKIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAM 147 (334)
T ss_pred h-hhhh-ccccceEEecCCceeeEEEEEEecCCCcceeec--CCCceEEEEecCcHHHHHHHHHhhcceEEEEecCchhH
Confidence 2 3344 667788999999999999999999999986532 333 6777778888888888888999999999999999
Q ss_pred HHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcC------------cEEEccc------------------
Q psy2951 748 EAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKG------------VKFVMKA------------------ 797 (1466)
Q Consensus 748 e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~g------------v~~~~~~------------------ 797 (1466)
|++.++. +.+|++....+......+++.+.+.+...|...+ ++...++
T Consensus 148 El~yElk--~~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~q~iea~pk~~~n~vg~algpDw~s~~d 225 (334)
T KOG2755|consen 148 ELTYELK--ILNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHFQYIEAFPKCEENNVGPALGPDWHSQID 225 (334)
T ss_pred HHHHHhh--cceeEEEecchhhhhcccCccHHHHhHhhhhcccccchhhhhhhhhhhhcCcccccCcccccCcchhhhcc
Confidence 9999884 5678888887766666677777766665552111 1011100
Q ss_pred -----------------eEEEEE-ecCCCceEEEECCCC--cEEecCEEEEccccccCccccccCCceeeCCCcEEeCCC
Q psy2951 798 -----------------NVSSFE-KNEKNDVTAANLDNG--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEY 857 (1466)
Q Consensus 798 -----------------~v~~i~-~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~ 857 (1466)
++..+. +.+...+.......+ ..+.||.+++|+|..||.+++-...+.+.++|.+.+|+.
T Consensus 226 l~g~~eseer~l~~l~~~~~~~~d~~d~~sv~~~~~ek~~~~qlt~d~ivSatgvtpn~e~~~~~~lq~~edggikvdd~ 305 (334)
T KOG2755|consen 226 LQGISESENRSLTYLRNCVITSTDTSDNLSVHYMDKEKMADNQLTCDFIVSATGVTPNSEWAMNKMLQITEDGGIKVDDA 305 (334)
T ss_pred cccchhhhhhhhHHhhhheeeeccchhhcccccccccccccceeeeeEEEeccccCcCceEEecChhhhccccCeeehhh
Confidence 000000 000001111111111 268899999999999999976665677788899999999
Q ss_pred CCCCCCCeEEecccccc
Q psy2951 858 LETNVPGVYAGGDIAYA 874 (1466)
Q Consensus 858 ~~t~~~~iya~GD~~~~ 874 (1466)
|+|+.|++||+||++..
T Consensus 306 m~tslpdvFa~gDvctt 322 (334)
T KOG2755|consen 306 METSLPDVFAAGDVCTT 322 (334)
T ss_pred ccccccceeeecceecc
Confidence 99999999999999874
|
|
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.8e-17 Score=202.88 Aligned_cols=300 Identities=17% Similarity=0.195 Sum_probs=174.1
Q ss_pred eeeccCcchhhhhhhhhhhccc--------------Cccc---c-ccCCCCCCCcEEEECCchHHHHHHHHHHhcCCCCc
Q psy2951 9 VTIQNDDSVVVQARKDELKNKK--------------RKLP---M-AKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGK 70 (1466)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~--------------~~~~---~-~~~~~~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~ 70 (1466)
|++..++|+.|..++++..+.. ++.+ . +...+.+.++|+|||||||||+||+.|++.|++|+
T Consensus 331 C~r~~dePV~I~~ler~i~d~~~~~~~~~e~y~~~~~~~~~~~~~~~~~~~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vt 410 (1028)
T PRK06567 331 CIYQKQDPVNIPLIESNILEETLKLPYGLEIYLLLTRWNPLNIYAPLPKEPTNYNILVTGLGPAGFSLSYYLLRSGHNVT 410 (1028)
T ss_pred hcCCCCCCeehhHHHHHHhhhhhhhcccccccccccccccccccCCCCCCCCCCeEEEECcCHHHHHHHHHHHhCCCeEE
Confidence 3344588999999999765420 1111 1 11123456899999999999999999999999999
Q ss_pred EEEEcCCCCCCCC-----------------CCc--cch--hcccCc---ccccccChhhhh-cCCeEEEeCceEEEeccc
Q psy2951 71 LYFITDENFLPYD-----------------RVK--LSK--QLDIKA---DSILLRTEEFYK-DNDIHVIKGKKIISDSEL 125 (1466)
Q Consensus 71 i~~~~~~~~~~~~-----------------~~~--~~~--~~~~~~---~~~~~~~~~~~~-~~~v~~~~~~~v~~~~~~ 125 (1466)
+++..+....++. +.+ ... .+++.. .+........++ ..+++++.+..+-.
T Consensus 411 v~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGIp~R~~k~~l~~i~~il~~g~~v~~~~gv~lG~---- 486 (1028)
T PRK06567 411 AIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGITVRWDKNNLDILRLILERNNNFKYYDGVALDF---- 486 (1028)
T ss_pred EEccccccccccccccccchhhhhccchhhhccccCCcccccCccccchHHHHHHHHHHHhcCCceEEECCeEECc----
Confidence 9875432111111 000 000 011110 000111111121 12466666655322
Q ss_pred cccEEEecCCcEEecCEEEEccCC-CCCCCCCCCCCC--cEEEecCHHHHHhhcc----------cCCCCCcEEEECCCH
Q psy2951 126 NEKKIKLQDGTSIDFTKIYLATGS-SPRTISQADGVN--KVFYLRTVEDANNIAP----------HITPESNVVVIGSSF 192 (1466)
Q Consensus 126 ~~~~v~~~~~~~~~~d~lviAtG~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----------~~~~~~~vvVvGgG~ 192 (1466)
+++.++-....||.|+||||+ .|+.++ +++.+ +++....+ ...+.. .+..+++|+|||||+
T Consensus 487 ---dit~edl~~~gyDAV~IATGA~kpr~L~-IPGeda~GV~sA~Df--L~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGn 560 (1028)
T PRK06567 487 ---NITKEQAFDLGFDHIAFCIGAGQPKVLD-IENFEAKGVKTASDF--LMTLQSGGAFLKNSNTNMVIRMPIAVIGGGL 560 (1028)
T ss_pred ---cCCHHHHhhcCCCEEEEeCCCCCCCCCC-CCCccCCCeEEHHHH--HHHHhhcccccccccCcccCCCCEEEEcCcH
Confidence 122222224569999999999 577654 45543 34432221 222110 112367999999999
Q ss_pred hHHHHHHHHhh---------------------------------------------------CCCEEEEEeecCcccccc
Q psy2951 193 IGMEAAAFCAS---------------------------------------------------KVKSVTVVGRGAVPFQES 221 (1466)
Q Consensus 193 ~g~e~A~~l~~---------------------------------------------------~g~~Vtlv~~~~~~~~~~ 221 (1466)
+|+|+|..... .|. |++++|....-.+.
T Consensus 561 TAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~eia~~f~~h~r~~g~~~~~~~v~~l~~~~G~-VtIvYRr~~~empA 639 (1028)
T PRK06567 561 TSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEFIAHAKLFKEAKNNEELRKVFNKLGG-ATVYYRGRLQDSPA 639 (1028)
T ss_pred HHHHHHHHHHhhccchhhHHHHhhhhhhcccccHHHHHHHHHHHHhhcchhccchhhhhhccCCc-eEEEecCChhhCCC
Confidence 99999983332 233 99998875433222
Q ss_pred cCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCCeEEEEcC------------------------------CCcEEec
Q psy2951 222 LGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLD------------------------------NGTTIPA 271 (1466)
Q Consensus 222 ~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~~------------------------------~g~~i~~ 271 (1466)
.. ...+.+.+.+ +.||+++++..+.++..++.+++..+++. ...+++|
T Consensus 640 ~~-~~~eEv~~A~-eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 717 (1028)
T PRK06567 640 YK-LNHEELIYAL-ALGVDFKENMQPLRINVDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKT 717 (1028)
T ss_pred CC-CCHHHHHHHH-HcCcEEEecCCcEEEEecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccC
Confidence 10 0123344444 56999999999999976555555543221 1256899
Q ss_pred cEEEEeeccccCccccccCCceecCCccEEECCCCCcCCCCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHh
Q psy2951 272 DLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNM 351 (1466)
Q Consensus 272 D~Vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i 351 (1466)
|.||+|+|..||+.+... +..+-++.+++| .|++..|+++|+.++.+|
T Consensus 718 ~~vi~A~G~~~~~~~~~~-------------~~s~~~d~~~~f-------------------~Gtvv~A~as~k~~~~~i 765 (1028)
T PRK06567 718 KTVIMAIGIENNTQFDED-------------KYSYFGDCNPKY-------------------SGSVVKALASSKEGYDAI 765 (1028)
T ss_pred CEEEEecccCCccccccc-------------ccccccCCCCcc-------------------ccHHHHHHHHHHhHHHHH
Confidence 999999999999976310 011222334444 245678999999999998
Q ss_pred cC
Q psy2951 352 VE 353 (1466)
Q Consensus 352 ~~ 353 (1466)
..
T Consensus 766 ~~ 767 (1028)
T PRK06567 766 NK 767 (1028)
T ss_pred HH
Confidence 53
|
|
| >PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-19 Score=195.57 Aligned_cols=181 Identities=30% Similarity=0.523 Sum_probs=141.5
Q ss_pred cEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhccCc---ccccc-----cChhhhccCCcEEEcC
Q psy2951 1068 TFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKA---DSILL-----RTEEFYKDNDIHVIKG 1139 (1466)
Q Consensus 1068 ~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~~~~---~~~~~-----~~~~~~~~~~v~~~~~ 1139 (1466)
+|||||||+||++||..|++.+. +|+||++.+..+|....++....... ..... ...+.+...+++++.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~--~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 78 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGA--KVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLN 78 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS--EEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCC--eEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeec
Confidence 68999999999999999999888 99999998877776666555543111 10111 1122235679999888
Q ss_pred CeEEEeecCCCCeE----------EecCCcEEecCeEEEecCCCCCcCCCCCCCCcEEEecCHHHHHhhhcccCCCCeEE
Q psy2951 1140 KKIISDSELNEKKI----------KLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVV 1209 (1466)
Q Consensus 1140 ~~v~~i~d~~~~~v----------~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~~vv 1209 (1466)
+++.++ +...+.+ ...++.++.||+||+|||+.|+.+++| |.+..+..++..++..+...+...++|+
T Consensus 79 ~~v~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~-g~~~~~~~~~~~~~~~~~~~~~~~~~v~ 156 (201)
T PF07992_consen 79 AKVVSI-DPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIP-GEEVAYFLRGVDDAQRFLELLESPKRVA 156 (201)
T ss_dssp HTEEEE-EESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESST-TTTTECBTTSEEHHHHHHTHSSTTSEEE
T ss_pred cccccc-cccccccccCcccceeeccCCceEecCCeeeecCccccceeecC-CCcccccccccccccccccccccccccc
Confidence 999999 9887742 234567899999999999999999999 8753444567778888888877777999
Q ss_pred EEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCC
Q psy2951 1210 VIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG 1289 (1466)
Q Consensus 1210 VvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g 1289 (1466)
|||
T Consensus 157 VvG----------------------------------------------------------------------------- 159 (201)
T PF07992_consen 157 VVG----------------------------------------------------------------------------- 159 (201)
T ss_dssp EES-----------------------------------------------------------------------------
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 999
Q ss_pred CeeecCEEEEeeccccCcccc-ccCCceeeCCCeEEeCCCccccCCCEEEecccccCC
Q psy2951 1290 TTIPADLVIVGIGTVLNTNYL-DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 1346 (1466)
Q Consensus 1290 ~~i~~D~vv~a~G~~p~~~~~-~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p 1346 (1466)
+++| +..+++++.+|++.||++++|+.|+|||+|||+..+
T Consensus 160 -----------------~~~l~~~~~~~~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~ 200 (201)
T PF07992_consen 160 -----------------TEFLAEKLGVELDENGFIKVDENLQTSVPGIYAAGDCAGIY 200 (201)
T ss_dssp -----------------TTTSTHHTTSTBTTTSSBEEBTTSBBSSTTEEE-GGGBEES
T ss_pred -----------------ccccccccccccccccccccccccccccccccccccccccC
Confidence 4566 778999988999999999999999999999999865
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E .... |
| >PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.8e-19 Score=193.02 Aligned_cols=181 Identities=29% Similarity=0.523 Sum_probs=134.8
Q ss_pred eEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhccc---C-ccccc----ccCHhHhhhCCcEEEEc
Q psy2951 597 TFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDI---K-ADSIL----LRTEEFYKDNDIHVIKG 668 (1466)
Q Consensus 597 ~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~----~~~~~~~~~~gv~~~~~ 668 (1466)
||+||||||||++||..|++.+.+ ++++++.+..++....+...... . ..... ....+.+...+++++.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~--v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 78 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAK--VLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLN 78 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSE--EEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCe--EEEEecccccccccccccccccccccccccccccccccccccccccceEEEeec
Confidence 799999999999999999998887 88888876544433333332221 1 11111 03333456789999888
Q ss_pred eEEEEeccccccEE----------EccCCCEEecCEEEEcCCCCCCcCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEE
Q psy2951 669 KKIISDSELNEKKI----------KLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVV 738 (1466)
Q Consensus 669 ~~v~~i~~~~~~~v----------~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~vv 738 (1466)
+++..+ +...+.+ ...++.++.||+||||||+.|+.|+++ |.+.....++..++..+......+++|+
T Consensus 79 ~~v~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~-g~~~~~~~~~~~~~~~~~~~~~~~~~v~ 156 (201)
T PF07992_consen 79 AKVVSI-DPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIP-GEEVAYFLRGVDDAQRFLELLESPKRVA 156 (201)
T ss_dssp HTEEEE-EESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESST-TTTTECBTTSEEHHHHHHTHSSTTSEEE
T ss_pred cccccc-cccccccccCcccceeeccCCceEecCCeeeecCccccceeecC-CCcccccccccccccccccccccccccc
Confidence 889888 6665532 234567899999999999999999999 8753344456667777777766677999
Q ss_pred EECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCC
Q psy2951 739 VIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG 818 (1466)
Q Consensus 739 VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g 818 (1466)
|||
T Consensus 157 VvG----------------------------------------------------------------------------- 159 (201)
T PF07992_consen 157 VVG----------------------------------------------------------------------------- 159 (201)
T ss_dssp EES-----------------------------------------------------------------------------
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 999
Q ss_pred cEEecCEEEEccccccCcccc-ccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccC
Q psy2951 819 TTIPADLVIVGIGTVLNTNYL-DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 875 (1466)
Q Consensus 819 ~~i~~D~vi~a~G~~p~~~~~-~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~ 875 (1466)
++++ +..+++++++|++.+|+++||+.|+|||+|||+..+
T Consensus 160 -----------------~~~l~~~~~~~~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~ 200 (201)
T PF07992_consen 160 -----------------TEFLAEKLGVELDENGFIKVDENLQTSVPGIYAAGDCAGIY 200 (201)
T ss_dssp -----------------TTTSTHHTTSTBTTTSSBEEBTTSBBSSTTEEE-GGGBEES
T ss_pred -----------------ccccccccccccccccccccccccccccccccccccccccC
Confidence 4555 788999999999999999999999999999999764
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E .... |
| >COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.7e-17 Score=178.62 Aligned_cols=356 Identities=20% Similarity=0.314 Sum_probs=222.9
Q ss_pred cCCCCCCCccccceeec--CCEEE--c--CCCCceeecCCCccccCCCCCCCCeEEEEE--EcCCEEEEEcch-------
Q psy2951 982 GTKCSHYGAPLVKGSLG--DGRVR--C--PWHGACFNIATGDIEDFPGMDSLPCYKVTI--QNDDSVVVQARK------- 1046 (1466)
Q Consensus 982 ~~~C~h~g~~l~~g~~~--~~~~~--c--p~h~~~f~~~~g~~~~~p~~~~l~~~~v~~--~~~~~~~~~~~~------- 1046 (1466)
.-.|+..|..+.+..+. +..+. | ..|...|. |..|-+++ ...+..|++...
T Consensus 36 ~~~CSd~gqe~i~~dikeldrvVvaACsPr~he~~Fr--------------ln~y~~E~aniREqcswvH~~dAtekA~d 101 (622)
T COG1148 36 PYMCSDPGQEMIKKDIKELDRVVVAACSPRLHEPTFR--------------LNPYYLEIANIREQCSWVHMDDATEKAKD 101 (622)
T ss_pred eeccCchhHHHHHHHHHHhhheEEEecCCcccCCcee--------------eCHHHhhhhhHhhcceeeccchHHHHHHH
Confidence 34688888776665443 22222 4 25666665 23333322 234444553322
Q ss_pred ---hhhhccccCCCccccCCCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhccC-ccccc
Q psy2951 1047 ---DELKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIK-ADSIL 1122 (1466)
Q Consensus 1047 ---~~l~~~~~~~~~~~~~~~~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~~~-~~~~~ 1122 (1466)
.++.++...+++........++++|||||+||++||..|++.|+ ++.|+|+++.++..+..+.+.++.. ..-..
T Consensus 102 llr~avakar~le~le~~~~~v~~svLVIGGGvAGitAAl~La~~G~--~v~LVEKepsiGGrmak~~k~FP~~dcs~C~ 179 (622)
T COG1148 102 LLRMAVAKARKLEPLEEIKVEVSKSVLVIGGGVAGITAALELADMGF--KVYLVEKEPSIGGRMAKLNKTFPTNDCSICI 179 (622)
T ss_pred HHHHHHHHHhhcCChhhHHHhhccceEEEcCcHHHHHHHHHHHHcCC--eEEEEecCCcccccHHhhhccCCCcccchhh
Confidence 22233445566666566667899999999999999999999999 9999999999998877777777522 11111
Q ss_pred ccC--hhhhccCCcEEEcCCeEEEeecCC--CCe----------------------------------------------
Q psy2951 1123 LRT--EEFYKDNDIHVIKGKKIISDSELN--EKK---------------------------------------------- 1152 (1466)
Q Consensus 1123 ~~~--~~~~~~~~v~~~~~~~v~~i~d~~--~~~---------------------------------------------- 1152 (1466)
+.+ .+.....+|++++.++|..| +.. +.+
T Consensus 180 LaP~m~~v~~hp~i~l~TyaeV~ev-~G~vGnF~vki~kkpryVdd~CtgCg~C~~vCPve~~nefn~Gl~~~kAiy~p~ 258 (622)
T COG1148 180 LAPKMVEVSNHPNIELITYAEVEEV-SGSVGNFTVKIEKKPRYVDDKCTGCGACSEVCPVEVPNEFNEGLGKRKAIYIPF 258 (622)
T ss_pred ccchhhhhccCCceeeeeeeeeeee-cccccceEEEEecccccccccccccccccccCCcccCcccccccccceeeeccc
Confidence 222 23344456777777777665 321 111
Q ss_pred -----------------------------EEecCCc---EEecCeEEEecCCCCCcCCCCC--CCC---cEEEecCHHHH
Q psy2951 1153 -----------------------------IKLQDGT---SIDFTKIYLATGSSPRTISQAD--GVN---KVFYLRTVEDA 1195 (1466)
Q Consensus 1153 -----------------------------v~~~~g~---~~~yd~lvlAtG~~~~~~~~~~--g~~---~v~~~~~~~~~ 1195 (1466)
|.++... ++...++|+|||-+++...-.. |.. +|.+. + +.
T Consensus 259 ~qaVp~~~~Id~~~c~~c~~C~~ac~~~av~~~q~~e~ve~~vGaIIvAtGy~~~Da~~k~EyGYG~~~nVIT~--l-El 335 (622)
T COG1148 259 PQAVPLNYNIDPKHCIECGLCEKACPNEAVDLNQEPEEVELEVGAIIVATGYKPFDATRKEEYGYGKYPNVITN--L-EL 335 (622)
T ss_pred hhhcccccccChhhhccchhhhhcCCccccccCCCCcEEEEEeceEEEEccccccCcchhhhcCCCCCcchhhH--H-HH
Confidence 1122111 4667899999998776654221 332 44432 2 23
Q ss_pred Hhhhc-c-------c-----CCCCeEEEEc---CC--------------HHHHHHHHHHhcC--CCeEEEEcCCCcCCcc
Q psy2951 1196 NNIAP-H-------I-----TPESNVVVIG---SS--------------FIGMEAAAFCASK--VKSVTVVGRGAVPFQE 1243 (1466)
Q Consensus 1196 ~~l~~-~-------~-----~~~~~vvVvG---~g--------------~~g~e~a~~l~~~--g~~v~vv~~~~~~~~~ 1243 (1466)
.++.. . + .+.|+|+.|- +- ..++..|...+++ ..+|++.+.+-+
T Consensus 336 Erml~~~GPT~GkvlrpSdg~~pKrVaFIqCVGSRD~~~~n~YCSrvCCm~slKqA~~Ike~~Pd~~v~I~YmDiR---- 411 (622)
T COG1148 336 ERMLNPNGPTGGKVLRPSDGKPPKRVAFIQCVGSRDFQVGNPYCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDIR---- 411 (622)
T ss_pred HHHhccCCCCCceEEecCCCCCCceEEEEEEecCcCcccCChhhHHHHHHHHHhhhhhhhhcCCCcceeEEEEEee----
Confidence 33332 1 1 2357887763 21 2345556666665 468999888763
Q ss_pred cccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCC-----CeeecCEEEEeeccccCcc---ccccCCc
Q psy2951 1244 SLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG-----TTIPADLVIVGIGTVLNTN---YLDGKGV 1315 (1466)
Q Consensus 1244 ~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g-----~~i~~D~vv~a~G~~p~~~---~~~~~gl 1315 (1466)
.++....+++.+.-++.||+|+.+. +.+|...++++ ..|...|. .++++|+||+++|+.|... +.+..||
T Consensus 412 afG~~yEefY~~~Q~~~gV~fIRGr-vaei~e~p~~~-l~V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL 489 (622)
T COG1148 412 AFGKDYEEFYVRSQEDYGVRFIRGR-VAEIAEFPKKK-LIVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGL 489 (622)
T ss_pred ccCccHHHHHHhhhhhhchhhhcCC-hHHheeCCCCe-eEEEEEeccCccceecccceEEEeeccccCcchHHHHHhcCc
Confidence 4455666777777779999999775 44444244444 34554443 5789999999999999654 5666899
Q ss_pred eeeCCCeEEeC-CCc---cccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhc
Q psy2951 1316 ELNGQKAVVVN-EYL---ETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMV 1375 (1466)
Q Consensus 1316 ~~~~~G~i~vd-~~~---~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~ 1375 (1466)
+.+++||+... ..+ +|+.++||.+| +++.|.-. +.+..||..||...+
T Consensus 490 ~~~~~gF~k~~hPkl~pv~s~~~GIflAG-~aqgPkdI-----------~~siaqa~aAA~kA~ 541 (622)
T COG1148 490 SQDEDGFLKEAHPKLRPVDSNRDGIFLAG-AAQGPKDI-----------ADSIAQAKAAAAKAA 541 (622)
T ss_pred ccCCCCccccCCCCcccccccCCcEEEee-cccCCccH-----------HHHHHHhHHHHHHHH
Confidence 99999988776 334 45689999999 67777654 677788877765544
|
|
| >KOG3851|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.6e-18 Score=174.84 Aligned_cols=297 Identities=15% Similarity=0.185 Sum_probs=195.0
Q ss_pred CCCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcccCcccccccCHhHhhhCCcEEEEceE
Q psy2951 591 SSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKK 670 (1466)
Q Consensus 591 ~~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~ 670 (1466)
...+..+|+|||||.+|++.|..+.+.-.+..|-++|+...+.|++......-+...-+-..+....+-..+.+.+...
T Consensus 35 ~~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~a~wi~ek- 113 (446)
T KOG3851|consen 35 FARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKGATWIKEK- 113 (446)
T ss_pred hcccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhccCcccccccCCcHHHHHH-
Confidence 3456799999999999999999999876677899999988777765543322221111111111122223344444433
Q ss_pred EEEeccccccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCC------cEEEecCHHHHHhhccc---CCCCCcEEEE-
Q psy2951 671 IISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN------KVFYLRTVEDANNIAPH---ITPESNVVVI- 740 (1466)
Q Consensus 671 v~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~------~~~~~~~~~~~~~~~~~---~~~~~~vvVv- 740 (1466)
|... ++++.+|.+.+|++|+||++|||+|..-+.-.|+ |+. ++...++....+...+. .++|.-+--.
T Consensus 114 v~~f-~P~~N~v~t~gg~eIsYdylviA~Giql~y~~Ik-Gl~Eal~tP~VcSnYSpkyvdk~y~~~~~fk~GNAIfTfP 191 (446)
T KOG3851|consen 114 VKEF-NPDKNTVVTRGGEEISYDYLVIAMGIQLDYGKIK-GLVEALDTPGVCSNYSPKYVDKVYKELMNFKKGNAIFTFP 191 (446)
T ss_pred HHhc-CCCcCeEEccCCcEEeeeeEeeeeeceeccchhc-ChHhhccCCCcccccChHHHHHHHHHHHhccCCceEEecC
Confidence 7778 8999999999999999999999999876665565 432 55555565555443322 2333333222
Q ss_pred -------CCChHHHHHH-HHHhccC--CeEEEEeecCccCccccC-HHHHHHHHHHHHhcCcEEEccceEEEEEecCCCc
Q psy2951 741 -------GSSFIGMEAA-AFCASKV--KSVTVVGRGAVPFQESLG-KEVGERITKLFESKGVKFVMKANVSSFEKNEKND 809 (1466)
Q Consensus 741 -------G~G~~g~e~A-~~l~~~g--~~V~lv~~~~~~~~~~~~-~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~ 809 (1466)
|+---.|-++ ..++++| .++.+++....+ ..|+ +...+.+++..++++|++.+.....++..++...
T Consensus 192 ntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~--~iFgVk~Y~~AL~k~~~~rni~vn~krnLiEV~~~~~~A 269 (446)
T KOG3851|consen 192 NTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNTSLP--TIFGVKHYADALEKVIQERNITVNYKRNLIEVRTNDRKA 269 (446)
T ss_pred CCccccCCCchhhhhhhHHHHHHhCccccccEEEecCcc--ceecHHHHHHHHHHHHHhcceEeeeccceEEEeccchhh
Confidence 3333334444 3566666 346666655422 2233 5667889999999999999999999998433221
Q ss_pred eEEEECCC-C--cEEecCEEEEccccccCccccccCCceeeCCCcEEeC-CCCCC-CCCCeEEeccccccCCcccCCcee
Q psy2951 810 VTAANLDN-G--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVN-EYLET-NVPGVYAGGDIAYAPLHSFYNKNA 884 (1466)
Q Consensus 810 ~~~v~~~~-g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd-~~~~t-~~~~iya~GD~~~~~~~~~~~~~~ 884 (1466)
+ --.+++ | ++++++++-+....++. +.+..+.+ .|..||+.|| .++|. .+||||++|||...|+..
T Consensus 270 v-Fe~L~kPG~t~ei~yslLHv~Ppms~p-e~l~~s~~-adktGfvdVD~~TlQs~kypNVFgiGDc~n~PnsK------ 340 (446)
T KOG3851|consen 270 V-FENLDKPGVTEEIEYSLLHVTPPMSTP-EVLANSDL-ADKTGFVDVDQSTLQSKKYPNVFGIGDCMNLPNSK------ 340 (446)
T ss_pred H-HHhcCCCCceeEEeeeeeeccCCCCCh-hhhhcCcc-cCcccceecChhhhccccCCCceeeccccCCCchh------
Confidence 1 112222 4 37899999998887766 45555553 5778999999 56775 699999999999998876
Q ss_pred eeccHHHHHHHHHHHHHHhc
Q psy2951 885 SIGHYQLAQYHGRIAALNMV 904 (1466)
Q Consensus 885 ~~~~~~~A~~~g~~aA~~i~ 904 (1466)
++..+..|..++-.|+.
T Consensus 341 ---TaAAvaaq~~vv~~nl~ 357 (446)
T KOG3851|consen 341 ---TAAAVAAQSPVVDKNLT 357 (446)
T ss_pred ---hHHHHHhcCchhhhhHH
Confidence 34445566677777764
|
|
| >KOG0399|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.5e-17 Score=194.73 Aligned_cols=316 Identities=20% Similarity=0.264 Sum_probs=193.2
Q ss_pred CcchhhhhhhhhhhcccC---ccccccCCCCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCC--CCCCCCccc
Q psy2951 14 DDSVVVQARKDELKNKKR---KLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENF--LPYDRVKLS 88 (1466)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~--~~~~~~~~~ 88 (1466)
+.|++|.++.+..++... ++.+-+....+-++|.|||+|||||+||-+|-+.|+.|+|++..++.. +-|..+.+.
T Consensus 1753 e~pv~iksie~aiid~af~egwm~p~pp~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmk 1832 (2142)
T KOG0399|consen 1753 EPPVGIKSIECAIIDKAFEEGWMKPCPPAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMK 1832 (2142)
T ss_pred cCCccccchhhHHHHHHHHhcCCccCCcccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccc
Confidence 889999999999887754 333333344556899999999999999999999999999998777532 223333321
Q ss_pred hhcccCcccccccChhhhhcCCeEEEeCceEEEeccccccEEEecCCcEEecCEEEEccCCC-CCCCCCCCC-CCcEEEe
Q psy2951 89 KQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSS-PRTISQADG-VNKVFYL 166 (1466)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~~~~~d~lviAtG~~-~~~~~~~~~-~~~~~~~ 166 (1466)
- ...+..+-.+++.+.||+|+.++.+-.. +.+ +.-.-.+|.+|+|+|+. |+.+|.... ..++++.
T Consensus 1833 l-----dk~vv~rrv~ll~~egi~f~tn~eigk~-------vs~-d~l~~~~daiv~a~gst~prdlpv~grd~kgv~fa 1899 (2142)
T KOG0399|consen 1833 L-----DKFVVQRRVDLLEQEGIRFVTNTEIGKH-------VSL-DELKKENDAIVLATGSTTPRDLPVPGRDLKGVHFA 1899 (2142)
T ss_pred h-----hHHHHHHHHHHHHhhCceEEeecccccc-------ccH-HHHhhccCeEEEEeCCCCCcCCCCCCccccccHHH
Confidence 0 0113445566788899999988765332 222 22234689999999985 787774432 2333321
Q ss_pred cCHHHHH---hhccc------CCCCCcEEEECCCHhHHHHHHHHhhCCCE-EEEEeecCcccc------------cccCH
Q psy2951 167 RTVEDAN---NIAPH------ITPESNVVVIGSSFIGMEAAAFCASKVKS-VTVVGRGAVPFQ------------ESLGK 224 (1466)
Q Consensus 167 ~~~~~~~---~~~~~------~~~~~~vvVvGgG~~g~e~A~~l~~~g~~-Vtlv~~~~~~~~------------~~~~~ 224 (1466)
-.+.+.. .++.. -.++|+|+|||||.+|-++...-.+.|.+ |.-++-.+.|.. +.|--
T Consensus 1900 me~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~ellp~pp~~ra~~npwpqwprvfrv 1979 (2142)
T KOG0399|consen 1900 MEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFELLPQPPPERAPDNPWPQWPRVFRV 1979 (2142)
T ss_pred HHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccccccchhhccceecceeecCCCCcccCCCCCCccCceEEEe
Confidence 1100000 01111 13679999999999999988877787754 443433222211 11111
Q ss_pred HHHHHHHHHHHhCCcE--------EE-------cCceEEE--EEecCCCCeEEEEcCC-CcEEeccEEEEeecccc-Ccc
Q psy2951 225 EVGERITKLFESKGVK--------FV-------MKANVSS--FEKNEKNDVTAANLDN-GTTIPADLVIVGIGTVL-NTN 285 (1466)
Q Consensus 225 ~~~~~l~~~l~~~GV~--------i~-------~~~~v~~--i~~~~~~~~~~v~~~~-g~~i~~D~Vi~a~G~~p-~~~ 285 (1466)
++...-.+..-...-+ ++ ++-...+ .++++.++...++..+ .+.++||+||+|.|+.- ...
T Consensus 1980 dygh~e~~~~~g~dpr~y~vltk~f~~~~~g~v~gl~~vrvew~k~~~g~w~~~ei~~see~~eadlv~lamgf~gpe~~ 2059 (2142)
T KOG0399|consen 1980 DYGHAEAKEHYGSDPRTYSVLTKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFVGPEKS 2059 (2142)
T ss_pred ecchHHHHHHhCCCcceeeeeeeeeeccCCCceeeEEEEEEEEEecCCCceEEEEcCCcceeeecceeeeeccccCcchh
Confidence 1111111111111111 00 0111111 1233334444333333 35789999999999874 455
Q ss_pred ccccCCceecCCccEEE-CCCCCcCCCCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcC
Q psy2951 286 YLDGKGVELNGQKAVVV-NEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVE 353 (1466)
Q Consensus 286 ~l~~~gl~~~~~g~i~v-d~~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~ 353 (1466)
..++.+++.|+++.|.+ ++.+.|+++++||+|||-....+ +..|+++|+.+|+.+-.
T Consensus 2060 ~~~~~~~~~d~rsni~t~~~~y~t~v~~vfaagdcrrgqsl-----------vvwai~egrq~a~~vd~ 2117 (2142)
T KOG0399|consen 2060 VIEQLNLKTDPRSNILTPKDSYSTDVAKVFAAGDCRRGQSL-----------VVWAIQEGRQAARQVDE 2117 (2142)
T ss_pred hhhhcCcccCccccccCCCccccccccceeecccccCCceE-----------EEEEehhhhHHHHHHHH
Confidence 66888899998887765 45588899999999999876543 33588899999988653
|
|
| >TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-15 Score=140.79 Aligned_cols=76 Identities=28% Similarity=0.424 Sum_probs=67.9
Q ss_pred CCEEEEEe-eCCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCeEEE
Q psy2951 495 TPKTLAQS-TTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVV 570 (1466)
Q Consensus 495 ~~~~~~~~-~~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~~ 570 (1466)
+..+++++ .+|++||+++.|||++++|+.|.++++.|.||||+|+|+++||++...|+..+|+.|+++++++.+++
T Consensus 23 g~~i~l~r~~~g~~~A~~~~CpH~g~~L~~G~~~~~~i~CP~Hg~~Fdl~tG~~~~~p~~~~l~~y~v~v~~g~v~V 99 (101)
T TIGR02377 23 GRTFAIYRTPDDQYYATDGLCTHEYAHLADGLVMDTTVECPKHAGCFDYRTGEALNPPVCVNLKTYPVKVVDGAVYV 99 (101)
T ss_pred CeEEEEEEeCCCEEEEEcCcCCCCCCCCCCCEEcCCEEECCccCCEEECCCCcccCCCccCCcceEeEEEECCEEEE
Confidence 34455555 58999999999999999999999999999999999999999999999998889999999998887764
|
This model describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members of this family are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H]. |
| >PF14759 Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LXD_A 2YVG_A 2GR1_A 2GQW_A 2GR3_A 2YVF_A 1F3P_A 2GR0_A 2GR2_A | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-15 Score=134.93 Aligned_cols=79 Identities=23% Similarity=0.418 Sum_probs=71.1
Q ss_pred cceeccccccEEEEeeCCCCceEEEcCCcCCceEEEEEEeCCEEEEEEEecCcHHHHHHHHHHHcCCCCChhcccccCc
Q psy2951 1386 FFWTMLFGVGFRFAGYAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTVGMDPLAAQFAERIKMQKYIQKDQIENNAW 1464 (1466)
Q Consensus 1386 ~~w~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1464 (1466)
||||+|||.+||++|.+..+++++++|++++..|++||+++|+|+|++++|.+++++.+|++|+++..+++++|+|.+.
T Consensus 1 ~FWSdQ~~~~iq~~G~~~~~~~~v~rg~~~~~~~~~~y~~~g~lva~~~vn~~~~~~~~rrli~~~~~~~~~~l~d~~~ 79 (85)
T PF14759_consen 1 WFWSDQYGVRIQIAGLPGGADEVVVRGDPESGKFVAFYLRDGRLVAAVSVNRPRDLRAARRLIAAGARVDPARLADPSV 79 (85)
T ss_dssp EEEEEETTEEEEEEE-STTSSEEEEEEETTTTEEEEEEEETTEEEEEEEES-HHHHHHHHHHHHTT-B--HHHHHSTTS
T ss_pred CeecccCCCeEEEEECCCCCCEEEEEccCCCCcEEEEEEcCCEEEEEEecCCHHHHHHHHHHHHCCCCcCHHHhcCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999987653
|
... |
| >cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox) | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.3e-15 Score=138.94 Aligned_cols=75 Identities=56% Similarity=1.137 Sum_probs=68.2
Q ss_pred CCEEEEEeeCCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCeEE
Q psy2951 495 TPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSV 569 (1466)
Q Consensus 495 ~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~ 569 (1466)
+..+++++.+|+++|++|.|||++++|.+|.+.++.|.||||+|+|++++|++...|+..+|+.|+++++++.+|
T Consensus 21 ~~~v~v~r~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~CP~Hg~~Fdl~tG~~~~~p~~~~l~~~~v~~~~g~i~ 95 (95)
T cd03478 21 DGKVLLVRQGGEVHAIGAKCPHYGAPLAKGVLTDGRIRCPWHGACFNLRTGDIEDAPALDSLPCYEVEVEDGRVY 95 (95)
T ss_pred CcEEEEEEECCEEEEEcCcCcCCCCccCCCeEeCCEEEcCCCCCEEECCCCcCcCCCccCCcceEEEEEECCEEC
Confidence 555666677999999999999999999999999999999999999999999999999988999999999877664
|
The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner. |
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.7e-15 Score=161.00 Aligned_cols=163 Identities=20% Similarity=0.263 Sum_probs=102.9
Q ss_pred EEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCC-----------Cc-------cch--hc-------------cc
Q psy2951 599 IVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR-----------VK-------LSK--QL-------------DI 645 (1466)
Q Consensus 599 vVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~-----------~~-------~~~--~~-------------~~ 645 (1466)
+|||||||||++|..|.++|.+ .++++|++..++... +. +.. .+ ..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~-~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGID-PVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFP 79 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT----EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSE
T ss_pred CEECcCHHHHHHHHHHHhCCCC-cEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccC
Confidence 6999999999999999999985 377788764332100 00 000 00 02
Q ss_pred CcccccccCHhHhhhCCcEEEEceEEEEecc-ccccEEEccCCCEEecCEEEEcCCC--CCCcCCCCCC-CC-cEEEecC
Q psy2951 646 KADSILLRTEEFYKDNDIHVIKGKKIISDSE-LNEKKIKLQDGTSIDFTKIYLATGS--SPRTISQADG-VN-KVFYLRT 720 (1466)
Q Consensus 646 ~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~-~~~~~v~~~~~~~~~~d~lviAtG~--~~~~~~~~~g-~~-~~~~~~~ 720 (1466)
..+++..++..+.++++++++++++|+++.. .+.+.|+++++.++.+|+||+|||. .|+.|+++ | .+ ..++...
T Consensus 80 ~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~~-g~~~~~~~h~~~ 158 (203)
T PF13738_consen 80 SGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDIP-GSAFRPIIHSAD 158 (203)
T ss_dssp BHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---S-T-TGGCSEEEEGGG
T ss_pred CHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCccccc-cccccceEehhh
Confidence 3344555666777888999999999998832 2346788888889999999999994 89999988 7 33 3443332
Q ss_pred HHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCc
Q psy2951 721 VEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAV 768 (1466)
Q Consensus 721 ~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~ 768 (1466)
..+.. ..++|+|+|||+|.+|+++|..|.+.|.+|+++.|++.
T Consensus 159 ~~~~~-----~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 159 WRDPE-----DFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp -STTG-----GCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred cCChh-----hcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 22221 23589999999999999999999999999999999873
|
... |
| >PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.1e-15 Score=137.37 Aligned_cols=77 Identities=32% Similarity=0.565 Sum_probs=69.3
Q ss_pred CEEEEEeeCCeEEEEeCCCCCCCcccCCceecC-CEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCeEEEEE
Q psy2951 496 PKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGD-GRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQ 572 (1466)
Q Consensus 496 ~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~~-~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~~~~ 572 (1466)
..+++++.+|++||++|.|||++++|+.|.+++ +.|+||||+|+|+++||++...|+..+|+.|+++++++.+++-.
T Consensus 24 ~~i~v~~~~g~~~A~~~~CpH~g~~L~~G~~~~~~~i~Cp~Hg~~Fd~~tG~~~~~p~~~~l~~y~v~v~~g~v~v~~ 101 (106)
T PRK09965 24 PVIALFNVGGEFYAIDDRCSHGNASLSEGYLEDDATVECPLHAASFCLRTGKALCLPATDPLRTYPVHVEGGDIFIDL 101 (106)
T ss_pred CeEEEEEECCEEEEEeCcCCCCCCCCCceEECCCCEEEcCCCCCEEEcCCCCeeCCCCCCCcceEeEEEECCEEEEEc
Confidence 556677789999999999999999999999988 79999999999999999999888878999999999888777643
|
|
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.1e-14 Score=161.81 Aligned_cols=267 Identities=12% Similarity=0.212 Sum_probs=152.8
Q ss_pred CCCCeEEEEcCchHHHHHHHHHH-HcCCCccEEEEcCCCCCCCCCCccchhcc-cCcccccccCHhHhhhCCcEEEEceE
Q psy2951 593 GNKDTFIVVGGGPSGATCVETLR-QNGFTGKLYFITDENFLPYDRVKLSKQLD-IKADSILLRTEEFYKDNDIHVIKGKK 670 (1466)
Q Consensus 593 ~~~~~vvVIGgG~AGl~aA~~l~-~~g~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~~~~~~~ 670 (1466)
...++|+|||||||||+||..|. +.|++ |+++|+.+.+. .......... .....+...+...+...+++++.+.+
T Consensus 37 ~~~krVAIVGaGPAGlyaA~~Ll~~~g~~--VtlfEk~p~pg-GLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~ 113 (506)
T PTZ00188 37 AKPFKVGIIGAGPSALYCCKHLLKHERVK--VDIFEKLPNPY-GLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVH 113 (506)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhcCCe--EEEEecCCCCc-cEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeE
Confidence 35689999999999999999765 66877 77777776543 3322221111 12223333444445567888876554
Q ss_pred EEEeccccccEEEccCCCEEecCEEEEcCCCCCCcCCCCC------------------CCC----cEEEecCHHHHH---
Q psy2951 671 IISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQAD------------------GVN----KVFYLRTVEDAN--- 725 (1466)
Q Consensus 671 v~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~------------------g~~----~~~~~~~~~~~~--- 725 (1466)
+.. .++.++- .-.||+||+|||+.+..++++. |.- .+.++....+..
T Consensus 114 VG~-------Dvt~eeL-~~~YDAVIlAtGA~~l~ipi~~~~~~~~~~GGe~~~~~l~Gvf~A~dfV~WYNg~p~~~~~~ 185 (506)
T PTZ00188 114 VGV-------DLKMEEL-RNHYNCVIFCCGASEVSIPIGQQDEDKAVSGGETNPRKQNGIFHARDLIYFYNNMYNDVRCK 185 (506)
T ss_pred ecC-------ccCHHHH-HhcCCEEEEEcCCCCCCCCcccccceeeeccccccccccCcEEehheEEEeecCCCCccccc
Confidence 321 1222222 2379999999998876555210 211 122222221111
Q ss_pred hhccc---CCCCCcEEEECCChHHHHHHHHHh--------------------cc-CCeEEEEeecCcc------------
Q psy2951 726 NIAPH---ITPESNVVVIGSSFIGMEAAAFCA--------------------SK-VKSVTVVGRGAVP------------ 769 (1466)
Q Consensus 726 ~~~~~---~~~~~~vvVvG~G~~g~e~A~~l~--------------------~~-g~~V~lv~~~~~~------------ 769 (1466)
....+ +...++++|||.|++|+++|..|. +. -.+|+|+.|+...
T Consensus 186 ~~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~L~~s~v~~V~ivgRRGp~qaaFT~kElrEL 265 (506)
T PTZ00188 186 AVDNYLNSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKVIKRHNIKHIYIVGRRGFWQSSFTNAELREL 265 (506)
T ss_pred cccccccccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHHHHhCCCcEEEEEEecCHHHhCCCHHHHHHH
Confidence 11111 124689999999999999998753 22 2468888877420
Q ss_pred --Cc--------ccc------CH--H-----------HHHHHHHHHH----------hcCcEEEccceEEEEEecCCCce
Q psy2951 770 --FQ--------ESL------GK--E-----------VGERITKLFE----------SKGVKFVMKANVSSFEKNEKNDV 810 (1466)
Q Consensus 770 --~~--------~~~------~~--~-----------~~~~~~~~l~----------~~gv~~~~~~~v~~i~~~~~~~~ 810 (1466)
+. ..+ +. + ..+.+.+... .+-+.+++...+.+|.. .++++
T Consensus 266 ~~l~~~~v~v~~~d~~~~~~~~~~~~~~r~~~r~~~~~~~~l~~~~~~~~~~~~~~~~r~i~l~F~~sP~ei~~-~~~~v 344 (506)
T PTZ00188 266 ISLENTKVILSKKNYDLCCHLKSDEENTNMKKRQHEIFQKMVKNYEEVEKNKEFYKTYKIIEFIFYFEIRQIRP-IDGAM 344 (506)
T ss_pred hcCCCCeEEEChhhhcccccccchhhhhhhhhhhhhHHHHHHHHHHhhccCccCCCCceEEEEEccCCceEEEC-CCCcE
Confidence 00 000 00 0 1112222221 13467778888888873 23566
Q ss_pred EEEECC-----------CC--cEEecCEEEEccccccCccccccCCceeeCCCcEEeCCCCC--CCCCCeEEeccccccC
Q psy2951 811 TAANLD-----------NG--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLE--TNVPGVYAGGDIAYAP 875 (1466)
Q Consensus 811 ~~v~~~-----------~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~--t~~~~iya~GD~~~~~ 875 (1466)
..+++. .| ++++||+|+-|+|++... + .|+++|.. +... ..+ ...|++|++|.+-..|
T Consensus 345 ~~v~~~~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~p-~---~g~pFd~~--~~n~-~grv~~~~~g~Y~~GWiKrGP 417 (506)
T PTZ00188 345 KNVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKSN-F---AENLYNQS--VQMF-KEDIGQHKFAIFKAGWFDKGP 417 (506)
T ss_pred eEEEEEEeecccCccCCCCeeEEEEcCEEEEcccccCCC-C---CCCCcccc--CCCC-CCcccCCCCCcEEeeecCcCC
Confidence 666554 23 268999999999998652 2 13555522 2221 112 1379999999998877
Q ss_pred Ccc
Q psy2951 876 LHS 878 (1466)
Q Consensus 876 ~~~ 878 (1466)
.-.
T Consensus 418 ~Gv 420 (506)
T PTZ00188 418 KGN 420 (506)
T ss_pred Cce
Confidence 644
|
|
| >cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO) | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-14 Score=135.29 Aligned_cols=76 Identities=28% Similarity=0.557 Sum_probs=69.0
Q ss_pred CCEEEEEeeCCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCeEEE
Q psy2951 495 TPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVV 570 (1466)
Q Consensus 495 ~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~~ 570 (1466)
+..+++++.+|+++|++|.|||+|++|..|...++.|.||||||+|++++|++..+|+..+|+.|+++++++.+++
T Consensus 22 g~~~~v~r~~~~~~a~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~fd~~~G~~~~~p~~~~L~~~~v~~~~g~v~v 97 (98)
T cd03528 22 GRPIAVYRVDGEFYATDDLCTHGDASLSEGYVEGGVIECPLHGGRFDLRTGKALSLPATEPLKTYPVKVEDGDVYV 97 (98)
T ss_pred CeEEEEEEECCEEEEECCcCCCCCCCCCCCeEeCCEEEeCCcCCEEECCCCcccCCCCCCCcceEeEEEECCEEEE
Confidence 4566667778899999999999999999999888899999999999999999999999889999999998887764
|
The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in |
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-14 Score=157.13 Aligned_cols=161 Identities=22% Similarity=0.353 Sum_probs=100.0
Q ss_pred EEECCchHHHHHHHHHHhcCCCCc-EEEEcCCCCCC--------CCCC---C-Cchhhc---------------------
Q psy2951 1070 IVVGGGPSGATCVETLRQNGFTGK-LYFITDENFLP--------YDRV---K-LSKQLD--------------------- 1115 (1466)
Q Consensus 1070 vIVG~G~aGl~aA~~L~~~g~~~~-i~li~~~~~~~--------~~~~---~-l~~~~~--------------------- 1115 (1466)
+|||||+|||++|..|++.|. + ++|||+++.++ +.+. . ....+.
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~--~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGI--DPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDF 78 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT-----EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSS
T ss_pred CEECcCHHHHHHHHHHHhCCC--CcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCccc
Confidence 799999999999999999999 6 99999985433 1000 0 000000
Q ss_pred cCcccccccChhhhccCCcEEEcCCeEEEeecCC--CCeEEecCCcEEecCeEEEecCC--CCCcCCCCCC-CC-cEEEe
Q psy2951 1116 IKADSILLRTEEFYKDNDIHVIKGKKIISDSELN--EKKIKLQDGTSIDFTKIYLATGS--SPRTISQADG-VN-KVFYL 1189 (1466)
Q Consensus 1116 ~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~d~~--~~~v~~~~g~~~~yd~lvlAtG~--~~~~~~~~~g-~~-~v~~~ 1189 (1466)
.+.+++......+.++++++++++++|+++ ... ...|+++++.++.+|+||+|||. .|+.|+++ | .+ ..++.
T Consensus 79 ~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v-~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~~-g~~~~~~~h~ 156 (203)
T PF13738_consen 79 PSGEEVLDYLQEYAERFGLEIRFNTRVESV-RRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDIP-GSAFRPIIHS 156 (203)
T ss_dssp EBHHHHHHHHHHHHHHTTGGEETS--EEEE-EEETTTEEEEETTS-EEEEEEEEE---SSCSB---S-T-TGGCSEEEEG
T ss_pred CCHHHHHHHHHHHHhhcCcccccCCEEEEE-EEeccEEEEEEEecceeeeeeEEEeeeccCCCCccccc-cccccceEeh
Confidence 001111111123566678899999999999 543 35788888889999999999996 88888888 7 33 34444
Q ss_pred cCHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCc
Q psy2951 1190 RTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAV 1239 (1466)
Q Consensus 1190 ~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~ 1239 (1466)
..+.+...+ .+++|+|||+|.+|++++..|.+.|.+|+++.|.+.
T Consensus 157 ~~~~~~~~~-----~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 157 ADWRDPEDF-----KGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp GG-STTGGC-----TTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred hhcCChhhc-----CCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 333333222 379999999999999999999999999999999873
|
... |
| >COG2146 {NirD} Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-14 Score=134.20 Aligned_cols=78 Identities=29% Similarity=0.595 Sum_probs=70.2
Q ss_pred CCCCEEEEEeeCCeEEEEeCCCCCCCcccCCceecCC-EEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCeEEE
Q psy2951 493 SSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGDG-RVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVV 570 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~~~-~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~~ 570 (1466)
.++..+++++.+|++||++|.|||.++||+.|.+++. .|.||+|+|+|+++||++++.|+...|+.|+++++++.+++
T Consensus 25 ~~~~~~~~~~~~g~v~A~~n~CpH~~~~l~~g~v~~~~~i~Cp~H~a~Fdl~tG~~~~~p~~~~l~~y~vrve~g~v~v 103 (106)
T COG2146 25 GGGRFALVVRADGEVFAIDNRCPHAGAPLSRGLVEGDETVVCPLHGARFDLRTGECLEPPAGKTLKTYPVRVEGGRVFV 103 (106)
T ss_pred cCCEEEEEEecCCEEEEEeCcCCCCCCcccccEeCCCCEEECCccCCEEEcCCCceecCCCCCceeEEeEEEECCEEEE
Confidence 4458899999999999999999999999999999986 59999999999999999999998644899999998776665
|
|
| >cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-14 Score=134.85 Aligned_cols=78 Identities=19% Similarity=0.470 Sum_probs=66.7
Q ss_pred CCCCEEEEEeeCCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCeEEEE
Q psy2951 493 SSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVV 571 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~~~ 571 (1466)
++..++++++.+|+++|++|.|||++++|++|.++++.|.||||||+|++++|++. .|+..+|+.|+++++++.++++
T Consensus 21 ~g~~i~l~r~~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~~G~~~-~p~~~~l~~y~v~v~~g~v~v~ 98 (98)
T cd03530 21 GGGEIAVFRTADDEVFALENRCPHKGGPLSEGIVHGEYVTCPLHNWVIDLETGEAQ-GPDEGCVRTFPVKVEDGRVYLG 98 (98)
T ss_pred CCEEEEEEEeCCCCEEEEcCcCCCCCCCccCCEEcCCEEECCCCCCEEECCCCCCC-CCCCCccceEeEEEECCEEEEC
Confidence 33445555455699999999999999999999999999999999999999999985 5666789999999998888764
|
The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium. |
| >KOG1800|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.4e-14 Score=151.74 Aligned_cols=288 Identities=20% Similarity=0.284 Sum_probs=165.2
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhcc-CcccccccChhhhccCCcEEEcCCeE
Q psy2951 1064 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDI-KADSILLRTEEFYKDNDIHVIKGKKI 1142 (1466)
Q Consensus 1064 ~~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~v 1142 (1466)
.+.++|.|||+||||+.+|..|.++.....|+|+|+.|. ||.....+..... ......-.....++.....|..+.+|
T Consensus 18 s~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~Pv-PFGLvRyGVAPDHpEvKnvintFt~~aE~~rfsf~gNv~v 96 (468)
T KOG1800|consen 18 SSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPV-PFGLVRYGVAPDHPEVKNVINTFTKTAEHERFSFFGNVKV 96 (468)
T ss_pred cCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCc-ccceeeeccCCCCcchhhHHHHHHHHhhccceEEEeccee
Confidence 445699999999999999999988755569999999984 3332222221110 00001111223344456666666544
Q ss_pred EEeecCCCCeEEecCCcEEecCeEEEecCC-CCCcCCCCCCCC--cEEEecCHHHH-------HhhhcccCCCCeEEEEc
Q psy2951 1143 ISDSELNEKKIKLQDGTSIDFTKIYLATGS-SPRTISQADGVN--KVFYLRTVEDA-------NNIAPHITPESNVVVIG 1212 (1466)
Q Consensus 1143 ~~i~d~~~~~v~~~~g~~~~yd~lvlAtG~-~~~~~~~~~g~~--~v~~~~~~~~~-------~~l~~~~~~~~~vvVvG 1212 (1466)
-.- +.+.+ -+-.||++|||.|+ .++.+.+| |.+ +|+..|..-.. +++--.+. +.+|+|||
T Consensus 97 G~d-------vsl~e-L~~~ydavvLaYGa~~dR~L~IP-Ge~l~~V~Sarefv~Wyng~P~~~~le~dls-~~~vvIvG 166 (468)
T KOG1800|consen 97 GRD-------VSLKE-LTDNYDAVVLAYGADGDRRLDIP-GEELSGVISAREFVGWYNGLPENQNLEPDLS-GRKVVIVG 166 (468)
T ss_pred ccc-------ccHHH-HhhcccEEEEEecCCCCcccCCC-CcccccceehhhhhhhccCCCcccccCcccc-cceEEEEc
Confidence 111 33322 24569999999998 78999999 876 77765533222 11222233 78999999
Q ss_pred CCHHHHHHHHHHhcC----------------------CCeEEEEcCCCcC--------------Cc-------c-cc---
Q psy2951 1213 SSFIGMEAAAFCASK----------------------VKSVTVVGRGAVP--------------FQ-------E-SL--- 1245 (1466)
Q Consensus 1213 ~g~~g~e~a~~l~~~----------------------g~~v~vv~~~~~~--------------~~-------~-~~--- 1245 (1466)
.|++++++|.-|... -.+|+++.|..-. ++ . .+
T Consensus 167 ~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRgp~~~aFTiKELRE~~~l~~~~~r~~~~~~~~~ 246 (468)
T KOG1800|consen 167 NGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRGPLQVAFTIKELREVLELPGARPRLDPVDFSGK 246 (468)
T ss_pred cCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCCcceEEEEeccCccceeeeHHHHHHHhCCCCcccccCchhccce
Confidence 999999999865332 1258888876311 00 0 00
Q ss_pred ------------cHHHHHHHHHHHHhCC---------cE---EEcCceEEEEEecCCCcEE-------------EEEcCC
Q psy2951 1246 ------------GKEVGERITKLFESKG---------VK---FVMKANVSSFEKNEKNDVT-------------AANLDN 1288 (1466)
Q Consensus 1246 ------------~~~~~~~l~~~~~~~g---------v~---~~~~~~v~~i~~~~~g~~~-------------~v~l~~ 1288 (1466)
-.++.+.+.+.++++- .+ +++......|.+++++ +. .+...+
T Consensus 247 ~~~~~~~~~~RpRkrl~ell~k~~~e~~~~~~~~~~~~k~w~~~f~r~P~~i~~~~~~-v~~~~~~~t~l~~~~~~~tg~ 325 (468)
T KOG1800|consen 247 WMDESETPQHRPRKRLTELLLKWAREHRAKASEEAGGSKQWHLRFFRTPGAILPGADG-VSGVRFQVTILEGTQAVPTGA 325 (468)
T ss_pred eCCcccccccCchhHHHHHHHHHHHhhhhccccccCccchhHHHHhcCHHHhccCccc-ccceEEEeeeehhhcccccCc
Confidence 0233444444444311 00 0011111122211111 11 112223
Q ss_pred CCeeecCEEEEeeccccCccccccCCceeeCCCeEEeCCCcccc----CCCEEEecccccCCCccCCCceeeeecHHHHH
Q psy2951 1289 GTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETN----VPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQ 1364 (1466)
Q Consensus 1289 g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~----~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~ 1364 (1466)
-++++|++++.++|+.... + ..|+..|...+++-+..++.. .|++|+.|-|.+.|.... ..++
T Consensus 326 ~e~~p~~l~i~sIGYks~p-v--~~gipFd~~kgvv~n~~GrV~~s~~~pglY~sGW~k~GP~GvI----------attm 392 (468)
T KOG1800|consen 326 FETLPCGLLIRSIGYKSVP-V--DSGIPFDDKKGVVPNVNGRVLVSGCSPGLYASGWVKHGPTGVI----------ATTM 392 (468)
T ss_pred eEeeccceeEeeeeecccc-c--CCCCCcccccCcccCCCceEEeeccCCceEEEeeeccCCccee----------eehh
Confidence 3679999999999986541 1 125666655445555555543 599999999998876431 4577
Q ss_pred HHHHHHHHHhcC
Q psy2951 1365 YHGRIAALNMVE 1376 (1466)
Q Consensus 1365 ~qa~~aa~~i~g 1376 (1466)
++|..+|..|+.
T Consensus 393 ~dAf~v~d~I~q 404 (468)
T KOG1800|consen 393 QDAFEVADTIVQ 404 (468)
T ss_pred hhHHHHHHHHHH
Confidence 777777777764
|
|
| >KOG1800|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.9e-14 Score=152.17 Aligned_cols=289 Identities=19% Similarity=0.268 Sum_probs=168.9
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcc-cCcccccccCHhHhhhCCcEEEEceEE
Q psy2951 593 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD-IKADSILLRTEEFYKDNDIHVIKGKKI 671 (1466)
Q Consensus 593 ~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~~~~~~~v 671 (1466)
+..++|.|||+||||+.+|..|.++-....|.++|+.+. ||...++..... .....+...+.+.++.....+..|.+|
T Consensus 18 s~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~Pv-PFGLvRyGVAPDHpEvKnvintFt~~aE~~rfsf~gNv~v 96 (468)
T KOG1800|consen 18 SSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPV-PFGLVRYGVAPDHPEVKNVINTFTKTAEHERFSFFGNVKV 96 (468)
T ss_pred cCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCc-ccceeeeccCCCCcchhhHHHHHHHHhhccceEEEeccee
Confidence 445699999999999999999999755567888888754 554444433332 222333444555566667888877755
Q ss_pred EEeccccccEEEccCCCEEecCEEEEcCCCC-CCcCCCCCCCC--cEEEecCHH-------HHHhhcccCCCCCcEEEEC
Q psy2951 672 ISDSELNEKKIKLQDGTSIDFTKIYLATGSS-PRTISQADGVN--KVFYLRTVE-------DANNIAPHITPESNVVVIG 741 (1466)
Q Consensus 672 ~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~-~~~~~~~~g~~--~~~~~~~~~-------~~~~~~~~~~~~~~vvVvG 741 (1466)
... +++. .-+-.||+||||+|+. ++.++|| |.+ +++..+... +..++.-.+. +.+|+|||
T Consensus 97 G~d-------vsl~-eL~~~ydavvLaYGa~~dR~L~IP-Ge~l~~V~Sarefv~Wyng~P~~~~le~dls-~~~vvIvG 166 (468)
T KOG1800|consen 97 GRD-------VSLK-ELTDNYDAVVLAYGADGDRRLDIP-GEELSGVISAREFVGWYNGLPENQNLEPDLS-GRKVVIVG 166 (468)
T ss_pred ccc-------ccHH-HHhhcccEEEEEecCCCCcccCCC-CcccccceehhhhhhhccCCCcccccCcccc-cceEEEEc
Confidence 221 2221 2245799999999974 8889999 875 555433322 2222222223 88999999
Q ss_pred CChHHHHHHHHHhcc----------------------CCeEEEEeecCccCcc---------------------------
Q psy2951 742 SSFIGMEAAAFCASK----------------------VKSVTVVGRGAVPFQE--------------------------- 772 (1466)
Q Consensus 742 ~G~~g~e~A~~l~~~----------------------g~~V~lv~~~~~~~~~--------------------------- 772 (1466)
.|++++++|..|... -++|+|+.|+...-..
T Consensus 167 ~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRgp~~~aFTiKELRE~~~l~~~~~r~~~~~~~~~ 246 (468)
T KOG1800|consen 167 NGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRGPLQVAFTIKELREVLELPGARPRLDPVDFSGK 246 (468)
T ss_pred cCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCCcceEEEEeccCccceeeeHHHHHHHhCCCCcccccCchhccce
Confidence 999999999876421 2578898877531000
Q ss_pred ----------ccCHHHHHHHHHHHHhc---------Cc---EEEccceEEEEEecCCC----ceE--------EEECCCC
Q psy2951 773 ----------SLGKEVGERITKLFESK---------GV---KFVMKANVSSFEKNEKN----DVT--------AANLDNG 818 (1466)
Q Consensus 773 ----------~~~~~~~~~~~~~l~~~---------gv---~~~~~~~v~~i~~~~~~----~~~--------~v~~~~g 818 (1466)
.--+++.+.+.+.+.++ +. .+.+...+.+|.++.++ .+. .+.+.+-
T Consensus 247 ~~~~~~~~~~RpRkrl~ell~k~~~e~~~~~~~~~~~~k~w~~~f~r~P~~i~~~~~~v~~~~~~~t~l~~~~~~~tg~~ 326 (468)
T KOG1800|consen 247 WMDESETPQHRPRKRLTELLLKWAREHRAKASEEAGGSKQWHLRFFRTPGAILPGADGVSGVRFQVTILEGTQAVPTGAF 326 (468)
T ss_pred eCCcccccccCchhHHHHHHHHHHHhhhhccccccCccchhHHHHhcCHHHhccCcccccceEEEeeeehhhcccccCce
Confidence 00022333333333331 11 11112223333322111 000 1122233
Q ss_pred cEEecCEEEEccccccCccccccCCceeeCCCcEEeCCCCCC----CCCCeEEeccccccCCcccCCceeeeccHHHHHH
Q psy2951 819 TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLET----NVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQY 894 (1466)
Q Consensus 819 ~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t----~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~ 894 (1466)
++++|++++.++|++... +- .|+.+|....+..|...+. -.|++|++|-|...|.-. ...+++
T Consensus 327 e~~p~~l~i~sIGYks~p-v~--~gipFd~~kgvv~n~~GrV~~s~~~pglY~sGW~k~GP~Gv----------Iattm~ 393 (468)
T KOG1800|consen 327 ETLPCGLLIRSIGYKSVP-VD--SGIPFDDKKGVVPNVNGRVLVSGCSPGLYASGWVKHGPTGV----------IATTMQ 393 (468)
T ss_pred EeeccceeEeeeeecccc-cC--CCCCcccccCcccCCCceEEeeccCCceEEEeeeccCCcce----------eeehhh
Confidence 579999999999997542 11 1455554433333333322 259999999998877533 135677
Q ss_pred HHHHHHHHhcc
Q psy2951 895 HGRIAALNMVE 905 (1466)
Q Consensus 895 ~g~~aA~~i~~ 905 (1466)
++..+|..|..
T Consensus 394 dAf~v~d~I~q 404 (468)
T KOG1800|consen 394 DAFEVADTIVQ 404 (468)
T ss_pred hHHHHHHHHHH
Confidence 77777777753
|
|
| >PRK09511 nirD nitrite reductase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.3e-14 Score=132.85 Aligned_cols=75 Identities=15% Similarity=0.259 Sum_probs=63.6
Q ss_pred CCEEEEEe--eCCeEEEEeCCCCCCCcc-cCCceecC--C--EEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCe
Q psy2951 495 TPKTLAQS--TTSNIYAVGTKCSHYGAP-LVKGSLGD--G--RVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDD 567 (1466)
Q Consensus 495 ~~~~~~~~--~~g~~~a~~~~C~H~~~~-l~~g~~~~--~--~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~ 567 (1466)
++.+++++ .+|++||++|.|||++++ |+.|.+.+ + .|.||||+|+|+++||++...|+ .+|++|+++++++.
T Consensus 25 g~~i~l~~~~~~g~~~A~~n~CpH~~~~~L~~G~~~~~~g~~~V~CP~H~~~Fdl~TG~~~~~~~-~~l~typV~ve~g~ 103 (108)
T PRK09511 25 DEQVAIFRPYHDEQVFAISNIDPFFQASVLSRGLIAEHQGELWVASPLKKQRFRLSDGLCMEDEQ-FSVKHYDARVKDGV 103 (108)
T ss_pred CEEEEEEEECCCCEEEEEeCcCCCCCCcccCCceEccCCCeEEEECCCCCCEEECCCcccCCCCC-ccEeeEeEEEECCE
Confidence 44555555 589999999999999986 99999842 2 49999999999999999998776 48999999998888
Q ss_pred EEE
Q psy2951 568 SVV 570 (1466)
Q Consensus 568 ~~~ 570 (1466)
+++
T Consensus 104 V~v 106 (108)
T PRK09511 104 VQL 106 (108)
T ss_pred EEE
Confidence 765
|
|
| >KOG1399|consensus | Back alignment and domain information |
|---|
Probab=99.52 E-value=8e-14 Score=163.09 Aligned_cols=230 Identities=16% Similarity=0.236 Sum_probs=143.9
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCC----------------CCc--------------cchh-
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD----------------RVK--------------LSKQ- 642 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~----------------~~~--------------~~~~- 642 (1466)
.+++|+|||||||||.+|+.|.+.|++ ++++|+.+.+++. ... ....
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~--v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~ 82 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHE--VVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERD 82 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCC--ceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccC
Confidence 478999999999999999999999999 5555555433311 100 0000
Q ss_pred cc--cCcccccccCHhHhhhCCc--EEEEceEEEEeccc--cccEEEccCC----CEEecCEEEEcCCCC--CCcCCCCC
Q psy2951 643 LD--IKADSILLRTEEFYKDNDI--HVIKGKKIISDSEL--NEKKIKLQDG----TSIDFTKIYLATGSS--PRTISQAD 710 (1466)
Q Consensus 643 ~~--~~~~~~~~~~~~~~~~~gv--~~~~~~~v~~i~~~--~~~~v~~~~~----~~~~~d~lviAtG~~--~~~~~~~~ 710 (1466)
.. .+..++..++..+.+..++ .+.++++|..+... ..+.|.+.+. .+.-||.|++|||-. |+.|.++
T Consensus 83 ~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~- 161 (448)
T KOG1399|consen 83 PRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIP- 161 (448)
T ss_pred cccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCC-
Confidence 00 2333566677777777776 47778866666333 3566766544 477899999999954 8888888
Q ss_pred CCC-cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhc
Q psy2951 711 GVN-KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESK 789 (1466)
Q Consensus 711 g~~-~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~ 789 (1466)
|.. ..+...-++....-......+|+|+|||+|++|+|++..+++..++|++..+ ..... ... ... .-.
T Consensus 162 g~~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~-~~~~~----~~~----~~~-~~~ 231 (448)
T KOG1399|consen 162 GPGIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVV-SPKVH----VEP----PEI-LGE 231 (448)
T ss_pred CCchhhcCCcceehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeee-ccccc----ccc----cce-eec
Confidence 632 1111111111111122234589999999999999999999999999988865 10000 000 000 011
Q ss_pred CcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCccccccCC
Q psy2951 790 GVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKG 843 (1466)
Q Consensus 790 gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~g 843 (1466)
++..+. .|..++ +++ .+.++++....+|.+|+|||+.-...+++..+
T Consensus 232 ~~~~~~--~i~~~~--e~~---~~~~~~~~~~~~D~ii~ctgy~y~fPfl~~~~ 278 (448)
T KOG1399|consen 232 NLWQVP--SIKSFT--EDG---SVFEKGGPVERVDRIIFCTGYKYKFPFLETLG 278 (448)
T ss_pred ceEEcc--cccccc--Ccc---eEEEcCceeEEeeeEEEeeeeEeecceeccCC
Confidence 222221 144444 221 35566777888999999999998888777654
|
|
| >PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.3e-14 Score=131.68 Aligned_cols=73 Identities=34% Similarity=0.669 Sum_probs=65.4
Q ss_pred CCCEEEEEeeCCeEEEEeCCCCCCCcccCCc--eecCCEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcC
Q psy2951 494 STPKTLAQSTTSNIYAVGTKCSHYGAPLVKG--SLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQND 566 (1466)
Q Consensus 494 ~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g--~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~ 566 (1466)
++..+++++.+|+++|++|.|||++++|.+| ..+++.|+||||||+|+++||++..+|+..+++.|+++++++
T Consensus 23 ~~~~v~~~~~~g~~~A~~~~CpH~g~~l~~~~~~~~~~~i~Cp~Hg~~Fd~~tG~~~~~p~~~~l~~~~v~ve~~ 97 (97)
T PF00355_consen 23 GGKLVLVRRSDGEIYAFSNRCPHQGCPLSEGPFSEDGGVIVCPCHGWRFDLDTGECVGGPAPRPLPLYPVKVEGD 97 (97)
T ss_dssp TTEEEEEEETTTEEEEEESB-TTTSBBGGCSSEETTTTEEEETTTTEEEETTTSBEEESTTCSBSTEEEEEEETT
T ss_pred CCcEEEEEeCCCCEEEEEccCCccceeEcceecccccCEEEeCCcCCEEeCCCceEecCCCCCCcCCCCeEEeCC
Confidence 5778888889999999999999999999999 345679999999999999999999999999999999998754
|
Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B .... |
| >COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-13 Score=165.40 Aligned_cols=171 Identities=17% Similarity=0.236 Sum_probs=115.7
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCC-------CCccc--h--------hc----c-cCccc
Q psy2951 592 SGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD-------RVKLS--K--------QL----D-IKADS 649 (1466)
Q Consensus 592 ~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~-------~~~~~--~--------~~----~-~~~~~ 649 (1466)
.....+|+|||||++||++|+.|+++|..- ++++|++...+.. ...+. . .+ . .....
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~-~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~ 83 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPD-FVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAE 83 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCc-EEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCccc
Confidence 345799999999999999999999999874 6677776432211 10000 0 00 0 11122
Q ss_pred ccccCHhHhhhCCcE--EEEceEEEEe---ccccccEEEccCCCE--EecCEEEEcCC--CCCCcCCCCCCCC----cEE
Q psy2951 650 ILLRTEEFYKDNDIH--VIKGKKIISD---SELNEKKIKLQDGTS--IDFTKIYLATG--SSPRTISQADGVN----KVF 716 (1466)
Q Consensus 650 ~~~~~~~~~~~~gv~--~~~~~~v~~i---~~~~~~~v~~~~~~~--~~~d~lviAtG--~~~~~~~~~~g~~----~~~ 716 (1466)
+..+...+++++++. +..++.|..+ .+...++|+++++.+ +.+|+||+||| +.|+.|+++ |.+ .++
T Consensus 84 ~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~-G~~~f~g~~~ 162 (443)
T COG2072 84 IKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFA-GLDEFKGRIL 162 (443)
T ss_pred HHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCC-CccCCCceEE
Confidence 444555666666544 3334444333 122356788877765 45999999999 789999999 877 233
Q ss_pred EecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCcc
Q psy2951 717 YLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP 769 (1466)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~ 769 (1466)
+.....+. ...+||+|+|||+|++|++++..|.+.|.+||++.|++..
T Consensus 163 HS~~~~~~-----~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~ 210 (443)
T COG2072 163 HSADWPNP-----EDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPH 210 (443)
T ss_pred chhcCCCc-----cccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCc
Confidence 22222222 2235999999999999999999999999999999999854
|
|
| >cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.2e-14 Score=132.19 Aligned_cols=78 Identities=24% Similarity=0.356 Sum_probs=68.6
Q ss_pred CCCCEEEEEeeCCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCeEEEE
Q psy2951 493 SSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVV 571 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~~~ 571 (1466)
++...+++++.+|+++|++|.|||++++|..|.++++.|.||||||+|++++|++.. |...+|+.|+++++++.+++-
T Consensus 21 ~~~~~~~~~~~~g~~~A~~n~CpH~g~~L~~g~~~g~~i~CP~Hg~~Fdl~~G~~~~-~~~~~L~~~~v~v~~g~v~v~ 98 (108)
T cd03474 21 DGEEVLLVAPEGGEFRAFQGICPHQEIPLAEGGFDGGVLTCRAHLWQFDADTGEGLN-PRDCRLARYPVKVEGGDILVD 98 (108)
T ss_pred CCeEEEEEEccCCeEEEEcCcCCCCCCCcccCcccCCEEEeCCcCCEEECCCccccC-CCCCccceEeEEEECCEEEEe
Confidence 346677888889999999999999999999999988899999999999999999875 555689999999987777653
|
T4mo is a four-protein complex that catalyzes the NADH- and O2-dependent hydroxylation of toluene to form p-cresol. T4mo consists of an NADH oxidoreductase (T4moF), a diiron hydroxylase (T4moH), a catalytic effector protein (T4moD), and a Rieske ferredoxin (T4moC). T4moC contains a Rieske domain and functions as an obligate electron carrier between T4moF and T4moH. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes. |
| >KOG1399|consensus | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.3e-13 Score=157.91 Aligned_cols=231 Identities=18% Similarity=0.264 Sum_probs=146.7
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCC-------------C-CCCCc--cchhc---------------
Q psy2951 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFL-------------P-YDRVK--LSKQL--------------- 91 (1466)
Q Consensus 43 ~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~-------------~-~~~~~--~~~~~--------------- 91 (1466)
.++|+|||||||||.+|+.|.+.|++++++|.++.-.. + |.+.. +.++.
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~~ 85 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPRY 85 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCccc
Confidence 57899999999999999999999999999987664211 1 21111 11111
Q ss_pred ccCcccccccChhhhhcCCe--EEEeCceEEEeccc--cccEEEecCC----cEEecCEEEEccCCC--CCCCCCCCCCC
Q psy2951 92 DIKADSILLRTEEFYKDNDI--HVIKGKKIISDSEL--NEKKIKLQDG----TSIDFTKIYLATGSS--PRTISQADGVN 161 (1466)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~v--~~~~~~~v~~~~~~--~~~~v~~~~~----~~~~~d~lviAtG~~--~~~~~~~~~~~ 161 (1466)
-.+..++..++..+.+++++ .+..++.+...... +.+.|...+. +...||.|++|||-. |+ +|.+++..
T Consensus 86 ~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~-~P~~~g~~ 164 (448)
T KOG1399|consen 86 FPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPR-IPQIPGPG 164 (448)
T ss_pred CCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCC-CCcCCCCc
Confidence 11233566677778888875 46666654443333 4677777554 467899999999976 44 34444421
Q ss_pred -cEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcE
Q psy2951 162 -KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVK 240 (1466)
Q Consensus 162 -~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~ 240 (1466)
..+..+.++...........+|+|+|||.|++|+|++..+++..++|++..+ ........ + .. ...++.
T Consensus 165 ~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~-~~~~~~~~-~-------~~-~~~~~~ 234 (448)
T KOG1399|consen 165 IESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVV-SPKVHVEP-P-------EI-LGENLW 234 (448)
T ss_pred hhhcCCcceehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeee-cccccccc-c-------ce-eecceE
Confidence 1233333344444455667789999999999999999999999988888754 10000000 0 00 011222
Q ss_pred EEcCceEEEEEecCCCCeEEEEcCCCcEEeccEEEEeeccccCccccccCC
Q psy2951 241 FVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKG 291 (1466)
Q Consensus 241 i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~l~~~g 291 (1466)
.+. .|..+++++ .+.+.++....+|.||+|||+.-...+++..+
T Consensus 235 ~~~--~i~~~~e~~-----~~~~~~~~~~~~D~ii~ctgy~y~fPfl~~~~ 278 (448)
T KOG1399|consen 235 QVP--SIKSFTEDG-----SVFEKGGPVERVDRIIFCTGYKYKFPFLETLG 278 (448)
T ss_pred Ecc--ccccccCcc-----eEEEcCceeEEeeeEEEeeeeEeecceeccCC
Confidence 221 155554432 24456677888999999999998888876543
|
|
| >cd04337 Rieske_RO_Alpha_Cao Cao (chlorophyll a oxygenase) is a rieske non-heme iron-sulfur protein located within the plastid-envelope inner and thylakoid membranes, that catalyzes the conversion of chlorophyllide a to chlorophyllide b | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.5e-14 Score=135.04 Aligned_cols=80 Identities=21% Similarity=0.444 Sum_probs=69.7
Q ss_pred CCCCEEEEEeeCCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCCC----CCCeEEEEEEcCeE
Q psy2951 493 SSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMD----SLPCYKVTIQNDDS 568 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~----~l~~~~v~i~~~~~ 568 (1466)
.+..++++++.+|+++|++|.|||+|++|+.|.++++.|+||||||+|+ .+|++...|... +++.|+++++++.+
T Consensus 38 ~g~~l~l~r~~~g~v~A~~n~CpH~g~~L~~G~~~~~~i~CP~Hgw~Fd-~tG~~~~~P~~~~~~~~l~~y~v~v~~g~V 116 (129)
T cd04337 38 FGQPWVLFRDEDGTPGCIRDECAHRACPLSLGKVIEGRIQCPYHGWEYD-GDGECTKMPSTKCLNVGIAALPCMEQDGMI 116 (129)
T ss_pred CCcEEEEEECCCCcEEEEeCcCCCCcCCcccCcEeCCEEEeCCCCCEEC-CCCCEEeCCcCCCccCCcceEeEEEECCEE
Confidence 4466666666789999999999999999999999988999999999999 799999988653 79999999988888
Q ss_pred EEEEc
Q psy2951 569 VVVQA 573 (1466)
Q Consensus 569 ~~~~~ 573 (1466)
|+...
T Consensus 117 ~V~~~ 121 (129)
T cd04337 117 WVWPG 121 (129)
T ss_pred EEEcC
Confidence 77553
|
CAO is found not only in plants but also in chlorophytes and prochlorophytes. This domain represents the N-terminal rieske domain of the oxygenase alpha subunit. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Cao is closely related to several other plant RO's including Tic 55, a 55 kDa protein associated with protein transport through the inner |
| >cd03531 Rieske_RO_Alpha_KSH The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH) | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.7e-14 Score=132.45 Aligned_cols=79 Identities=16% Similarity=0.340 Sum_probs=67.1
Q ss_pred CCCCEEEEEeeCCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCC------CCCCCeEEEEEEcC
Q psy2951 493 SSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPG------MDSLPCYKVTIQND 566 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~------~~~l~~~~v~i~~~ 566 (1466)
.+..++++++.+|+++|++|.|||+|++|+.|.++++.|+||||||+|+. +|++...|+ ..+++.|+++++++
T Consensus 22 ~g~~i~l~r~~~g~~~a~~n~CpH~ga~L~~G~~~~~~i~CP~Hg~~fd~-~G~~~~~p~~~~~p~~~~l~~ypv~~~~g 100 (115)
T cd03531 22 FGTKLVVFADSDGALNVLDAYCRHMGGDLSQGTVKGDEIACPFHDWRWGG-DGRCKAIPYARRVPPLARTRAWPTLERNG 100 (115)
T ss_pred CCeEEEEEECCCCCEEEEcCcCCCCCCCCccCcccCCEEECCCCCCEECC-CCCEEECCcccCCCcccccceEeEEEECC
Confidence 34566666566999999999999999999999999999999999999999 899998764 34688999999887
Q ss_pred eEEEEE
Q psy2951 567 DSVVVQ 572 (1466)
Q Consensus 567 ~~~~~~ 572 (1466)
.+|+..
T Consensus 101 ~v~v~~ 106 (115)
T cd03531 101 QLFVWH 106 (115)
T ss_pred EEEEEC
Confidence 776643
|
The terminal oxygenase component of KSH is a key enzyme in the microbial steroid degradation pathway, catalyzing the 9 alpha-hydroxylation of 4-androstene-3,17-dione (AD) and 1,4-androstadiene-3,17-dione (ADD). KSH is a two-component class IA monooxygenase, with terminal oxygenase (KshA) and oxygenase reductase (KshB) components. KSH activity has been found in many actino- and proteo- bacterial genera including Rhodococcus, Nocardia, Arthrobacter, Mycobacterium, and Burkholderia. |
| >COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.9e-13 Score=163.73 Aligned_cols=167 Identities=17% Similarity=0.274 Sum_probs=114.1
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCC-------CC--CCCCchhhc----cCc---ccc------
Q psy2951 1064 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP-------YD--RVKLSKQLD----IKA---DSI------ 1121 (1466)
Q Consensus 1064 ~~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~-------~~--~~~l~~~~~----~~~---~~~------ 1121 (1466)
....+|+|||||++|+++|.+|+++|.+. ++++|++...+ |+ +...++... .+. ...
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~-~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~ 84 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPD-FVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEI 84 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCc-EEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccH
Confidence 34678999999999999999999999943 99999996433 11 111111111 000 011
Q ss_pred cccChhhhccCCc--EEEcCCeEEEeecCC----CCeEEecCCcEE--ecCeEEEecCC--CCCcCCCCCCCC----cEE
Q psy2951 1122 LLRTEEFYKDNDI--HVIKGKKIISDSELN----EKKIKLQDGTSI--DFTKIYLATGS--SPRTISQADGVN----KVF 1187 (1466)
Q Consensus 1122 ~~~~~~~~~~~~v--~~~~~~~v~~i~d~~----~~~v~~~~g~~~--~yd~lvlAtG~--~~~~~~~~~g~~----~v~ 1187 (1466)
.....++++++++ .+..++.|..+ +.. ..+|+++++... .+|+||+|||. .|+.|+++ |.+ .++
T Consensus 85 ~~y~~~~~~~y~~~~~i~~~~~v~~~-~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~-G~~~f~g~~~ 162 (443)
T COG2072 85 KDYIKDYLEKYGLRFQIRFNTRVEVA-DWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFA-GLDEFKGRIL 162 (443)
T ss_pred HHHHHHHHHHcCceeEEEcccceEEE-EecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCC-CccCCCceEE
Confidence 1111234444433 23344444444 332 346888877664 49999999996 89999999 887 344
Q ss_pred EecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCC
Q psy2951 1188 YLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGA 1238 (1466)
Q Consensus 1188 ~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~ 1238 (1466)
+..++.+...++ +|+|+|||+|.+|++++..|.+.|.+||++.|.+
T Consensus 163 HS~~~~~~~~~~-----GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~ 208 (443)
T COG2072 163 HSADWPNPEDLR-----GKRVLVIGAGASAVDIAPELAEVGASVTLSQRSP 208 (443)
T ss_pred chhcCCCccccC-----CCeEEEECCCccHHHHHHHHHhcCCeeEEEecCC
Confidence 444455554454 9999999999999999999999999999999886
|
|
| >cd04338 Rieske_RO_Alpha_Tic55 Tic55 is a 55kDa LLS1-related non-heme iron oxygenase associated with protein transport through the plant inner chloroplast membrane | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.3e-13 Score=134.96 Aligned_cols=82 Identities=22% Similarity=0.387 Sum_probs=68.9
Q ss_pred CCCCCEEEEEeeCCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCC---------CCCCeEEEE
Q psy2951 492 ASSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGM---------DSLPCYKVT 562 (1466)
Q Consensus 492 ~~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~---------~~l~~~~v~ 562 (1466)
..+..++++++.+|+++|++|.|||+|++|+.|.+.++.|+||||+|+|+. +|++...|.. .+|+.|+++
T Consensus 37 v~g~~ivl~r~~~G~v~A~~n~CpHrga~L~~G~~~~~~i~CP~Hgw~Fd~-~G~~~~~P~~~~~~~~~~~~~l~~y~v~ 115 (134)
T cd04338 37 VYDEPFVLFRDQNGQLRCLEDRCPHRLAKLSEGQLIDGKLECLYHGWQFGG-EGKCVKIPQLPADAKIPKNACVKSYEVR 115 (134)
T ss_pred ECCceEEEEEcCCCCEEEEcCcCCCCcCcccCCeecCCEEEccCCCCEECC-CCCEEECCCCCccCCCCcccCcceEeEE
Confidence 344555555557899999999999999999999999999999999999996 8999877643 468999999
Q ss_pred EEcCeEEEEEcc
Q psy2951 563 IQNDDSVVVQAR 574 (1466)
Q Consensus 563 i~~~~~~~~~~~ 574 (1466)
++++.+|+....
T Consensus 116 ~~~G~V~V~~~~ 127 (134)
T cd04338 116 DSQGVVWMWMSE 127 (134)
T ss_pred EECCEEEEEcCC
Confidence 998888876543
|
This domain represents the N-terminal Rieske domain of the Tic55 oxygenase alpha subunit. Tic55 is closely related to the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO), Ptc52, and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. |
| >PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.6e-13 Score=155.12 Aligned_cols=233 Identities=20% Similarity=0.196 Sum_probs=129.1
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcc------------------------------
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD------------------------------ 644 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~------------------------------ 644 (1466)
.+|+++||.||++|+.|..|...+ ..++..+|+.+.+.++...+.....
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~-~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~r 80 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHG-DLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGR 80 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH----EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcC-CCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCC
Confidence 368999999999999999999988 4458888877544332211110000
Q ss_pred -----------cCcccccccCHhHhhhCCcEEEEceEEEEeccccc------cEEEcc----CCCEEecCEEEEcCCCCC
Q psy2951 645 -----------IKADSILLRTEEFYKDNDIHVIKGKKIISDSELNE------KKIKLQ----DGTSIDFTKIYLATGSSP 703 (1466)
Q Consensus 645 -----------~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~------~~v~~~----~~~~~~~d~lviAtG~~~ 703 (1466)
....++..++.-..++..-.+.++++|+.| +... ..|.+. ++..+.++.||||||..|
T Consensus 81 l~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I-~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P 159 (341)
T PF13434_consen 81 LYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSI-EPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQP 159 (341)
T ss_dssp HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEE-EEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE
T ss_pred hhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEE-EEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCC
Confidence 011111112212222345448889999998 3322 466663 356899999999999999
Q ss_pred CcCCCCCCC---CcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCC--eEEEEeecCccCc-------
Q psy2951 704 RTISQADGV---NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVK--SVTVVGRGAVPFQ------- 771 (1466)
Q Consensus 704 ~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~--~V~lv~~~~~~~~------- 771 (1466)
..|+..... ..+++......... ....+++|+|||||.+|.|++..|.+.+. +|+++.|++....
T Consensus 160 ~iP~~~~~~~~~~~v~Hss~~~~~~~---~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ 236 (341)
T PF13434_consen 160 RIPEWFQDLPGSPRVFHSSEYLSRID---QSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFV 236 (341)
T ss_dssp ---GGGGGGTT-TTEEEGGGHHHHHT--------EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCH
T ss_pred CCCcchhhcCCCCCEEEehHhhhccc---cccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccch
Confidence 988765332 35666554443321 14458999999999999999999998864 8999999875221
Q ss_pred -cccCHH-------------------------------HHHHHHHHH------HhcCcEEEccceEEEEEecCCCceEEE
Q psy2951 772 -ESLGKE-------------------------------VGERITKLF------ESKGVKFVMKANVSSFEKNEKNDVTAA 813 (1466)
Q Consensus 772 -~~~~~~-------------------------------~~~~~~~~l------~~~gv~~~~~~~v~~i~~~~~~~~~~v 813 (1466)
..++++ +.+.+.+.+ .+..+.++.+++|+.++..+++.+ .+
T Consensus 237 ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~-~l 315 (341)
T PF13434_consen 237 NEIFSPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGV-RL 315 (341)
T ss_dssp HGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSE-EE
T ss_pred hhhcCchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEE-EE
Confidence 122222 222222222 233578999999999986654433 34
Q ss_pred ECCC-----CcEEecCEEEEccccc
Q psy2951 814 NLDN-----GTTIPADLVIVGIGTV 833 (1466)
Q Consensus 814 ~~~~-----g~~i~~D~vi~a~G~~ 833 (1466)
.+.+ ..++++|.||+|||++
T Consensus 316 ~~~~~~~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 316 TLRHRQTGEEETLEVDAVILATGYR 340 (341)
T ss_dssp EEEETTT--EEEEEESEEEE---EE
T ss_pred EEEECCCCCeEEEecCEEEEcCCcc
Confidence 3332 2478999999999985
|
|
| >cd03529 Rieske_NirD Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.7e-13 Score=128.26 Aligned_cols=77 Identities=22% Similarity=0.339 Sum_probs=62.5
Q ss_pred CCCCEEEEEeeCCeEEEEeCCCCCCCcc-cCCceec----CCEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCe
Q psy2951 493 SSTPKTLAQSTTSNIYAVGTKCSHYGAP-LVKGSLG----DGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDD 567 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~~a~~~~C~H~~~~-l~~g~~~----~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~ 567 (1466)
++..+++++..+|++||++|.|||++++ |+.|.+. +..|+||||+|+|+++||+|...|+. +|+.|+++++++.
T Consensus 21 ~g~~i~l~r~~~g~~~A~~~~CpH~g~~ll~~G~~~~~~~~~~i~Cp~Hg~~Fdl~tG~~~~~p~~-~l~~y~v~~~~g~ 99 (103)
T cd03529 21 GDTQIAIFRLPGREVYAVQNMDPHSRANVLSRGIVGDIGGEPVVASPLYKQHFSLKTGRCLEDEDV-SVATFPVRVEDGE 99 (103)
T ss_pred CCEEEEEEEeCCCeEEEEeCcCCCCCCcccCCceEcccCCCeEEECCCCCCEEEcCCCCccCCCCc-cEeeEeEEEECCE
Confidence 3344444444445999999999999997 7888874 24899999999999999999988865 7999999998777
Q ss_pred EEE
Q psy2951 568 SVV 570 (1466)
Q Consensus 568 ~~~ 570 (1466)
+++
T Consensus 100 v~v 102 (103)
T cd03529 100 VYV 102 (103)
T ss_pred EEE
Confidence 764
|
Members include bacterial and fungal proteins. The bacterial NirD contains a single Rieske domain while fungal proteins have a C-terminal Rieske domain in addition to several other domains. The fungal NirD is involved in nutrient acquisition, functioning at the soil/fungus interface to control nutrient exchange between the fungus and the host plant. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The Rieske [2Fe-2S] cluster is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In this family, only a few members contain these residues. Other members may have lost the ability to bind the Rieske [2Fe-2S] cluster. |
| >PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.8e-13 Score=156.04 Aligned_cols=235 Identities=20% Similarity=0.194 Sum_probs=123.0
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCccch----------hc---------------------
Q psy2951 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSK----------QL--------------------- 91 (1466)
Q Consensus 43 ~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~~~~~~~----------~~--------------------- 91 (1466)
.+|+++||.||++|+.|..|.+.+ ...+..+++.+...+....+.. .+
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~-~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~r 80 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHG-DLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGR 80 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH----EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcC-CCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCC
Confidence 479999999999999999999887 3444445544322111111000 00
Q ss_pred ----------ccCcccccccChhhhhcCCeEEEeCceEEEecccc-----ccEEEec----CCcEEecCEEEEccCCCCC
Q psy2951 92 ----------DIKADSILLRTEEFYKDNDIHVIKGKKIISDSELN-----EKKIKLQ----DGTSIDFTKIYLATGSSPR 152 (1466)
Q Consensus 92 ----------~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~-----~~~v~~~----~~~~~~~d~lviAtG~~~~ 152 (1466)
.....++..++....++..-.+..+..|....... .++|.+. ++..+.++.||+|||..|.
T Consensus 81 l~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~ 160 (341)
T PF13434_consen 81 LYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPR 160 (341)
T ss_dssp HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE-
T ss_pred hhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCC
Confidence 00111222233333444554477777766532222 2567763 3468999999999999888
Q ss_pred CCCCCCCC---CcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCC--EEEEEeecCcccc--------
Q psy2951 153 TISQADGV---NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVK--SVTVVGRGAVPFQ-------- 219 (1466)
Q Consensus 153 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~--~Vtlv~~~~~~~~-------- 219 (1466)
.|...... +.++. +.+....... ..+.++|+|||||.+|.|++..|.+.+. +|+++.|++...+
T Consensus 161 iP~~~~~~~~~~~v~H--ss~~~~~~~~-~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~n 237 (341)
T PF13434_consen 161 IPEWFQDLPGSPRVFH--SSEYLSRIDQ-SLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVN 237 (341)
T ss_dssp --GGGGGGTT-TTEEE--GGGHHHHHT------EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHH
T ss_pred CCcchhhcCCCCCEEE--ehHhhhcccc-ccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchh
Confidence 66544432 44554 3333333322 4567899999999999999999988764 8999999754332
Q ss_pred cccCHHHH-------------------------------HHHHH-----HH-HhCCcEEEcCceEEEEEecCCCCeEE-E
Q psy2951 220 ESLGKEVG-------------------------------ERITK-----LF-ESKGVKFVMKANVSSFEKNEKNDVTA-A 261 (1466)
Q Consensus 220 ~~~~~~~~-------------------------------~~l~~-----~l-~~~GV~i~~~~~v~~i~~~~~~~~~~-v 261 (1466)
..++|++. +.+.+ .+ .+..++++.++.|++++..+++.+.. +
T Consensus 238 e~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l~~ 317 (341)
T PF13434_consen 238 EIFSPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRLTL 317 (341)
T ss_dssp GGGSHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEEEEE
T ss_pred hhcCchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEEEE
Confidence 12233322 22211 11 23357899999999998876433331 1
Q ss_pred -EcCCC--cEEeccEEEEeeccc
Q psy2951 262 -NLDNG--TTIPADLVIVGIGTV 281 (1466)
Q Consensus 262 -~~~~g--~~i~~D~Vi~a~G~~ 281 (1466)
....+ .++++|.||+|||++
T Consensus 318 ~~~~~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 318 RHRQTGEEETLEVDAVILATGYR 340 (341)
T ss_dssp EETTT--EEEEEESEEEE---EE
T ss_pred EECCCCCeEEEecCEEEEcCCcc
Confidence 22222 478999999999985
|
|
| >PF13806 Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A 3C0D_A 3D89_A 2JZA_A | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-13 Score=127.66 Aligned_cols=76 Identities=30% Similarity=0.587 Sum_probs=66.6
Q ss_pred CCCEEEEEee-CCeEEEEeCCCCC-CCcccCCceecCC----EEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCe
Q psy2951 494 STPKTLAQST-TSNIYAVGTKCSH-YGAPLVKGSLGDG----RVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDD 567 (1466)
Q Consensus 494 ~~~~~~~~~~-~g~~~a~~~~C~H-~~~~l~~g~~~~~----~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~ 567 (1466)
+++.+++++. +|++||++|.||| ++.+|+.|.+++. .|.||+|+|+|+++||+|.+.+. .++++|+++++++.
T Consensus 22 ~g~~Ialf~~~~~~vyAi~n~Cph~~~~~Ls~G~i~~~~g~~~V~CPlH~~~f~L~tG~~~~~~~-~~l~~ypvrv~~g~ 100 (104)
T PF13806_consen 22 DGRQIALFRVRDGEVYAIDNRCPHSQAGPLSDGLIGDGNGEPCVACPLHKWRFDLRTGECLEDPD-VSLRTYPVRVEDGQ 100 (104)
T ss_dssp TTEEEEEEEESTTEEEEEESBETTTTSSCGCGSEEEECTTEEEEEETTTTEEEETTTTEESSECS-EBSBEEEEEECTTE
T ss_pred CCeEEEEEEeCCCCEEEEeccCCccCCcccceeEEccCCCCEEEECCCCCCeEECCCcCcCCCCC-CcEEeEEEEEECCE
Confidence 3556666666 9999999999999 7999999999876 89999999999999999998766 68999999998777
Q ss_pred EEE
Q psy2951 568 SVV 570 (1466)
Q Consensus 568 ~~~ 570 (1466)
+++
T Consensus 101 V~V 103 (104)
T PF13806_consen 101 VYV 103 (104)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
|
|
| >TIGR02378 nirD_assim_sml nitrite reductase [NAD(P)H], small subunit | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.6e-13 Score=129.35 Aligned_cols=77 Identities=23% Similarity=0.460 Sum_probs=64.9
Q ss_pred CCCCEEEEEeeCCeEEEEeCCCCCC-CcccCCceecCCE----EEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCe
Q psy2951 493 SSTPKTLAQSTTSNIYAVGTKCSHY-GAPLVKGSLGDGR----VRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDD 567 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~~a~~~~C~H~-~~~l~~g~~~~~~----~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~ 567 (1466)
++..+++++..+|++||++|.|||+ +.+|+.|.+.++. |+||||+|+|+++||++..+|+. +|+.|+++++++.
T Consensus 22 ~g~~l~v~r~~~~~~~a~~~~CpH~g~~~L~~g~~~~~~~~~~i~Cp~Hg~~Fdl~tG~~~~~~~~-~L~~y~v~v~~g~ 100 (105)
T TIGR02378 22 GDTQIAIFRVPGDQVFAIQNMCPHKRAFVLSRGIVGDAQGELWVACPLHKRNFRLEDGRCLEDDSG-SVRTYEVRVEDGR 100 (105)
T ss_pred CCEEEEEEEeCCCcEEEEeCcCCCCCCccccceEEccCCCcEEEECCcCCCEEEcCCccccCCCCc-cEeeEeEEEECCE
Confidence 3344555544578999999999999 8999999887665 99999999999999999987765 8999999998887
Q ss_pred EEE
Q psy2951 568 SVV 570 (1466)
Q Consensus 568 ~~~ 570 (1466)
+|+
T Consensus 101 v~v 103 (105)
T TIGR02378 101 VYV 103 (105)
T ss_pred EEE
Confidence 765
|
This model describes NirD, the small subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirB, the large subunit (TIGR02374). In a few bacteria such as Klebsiella pneumoniae and in Fungi, the two regions are fused. |
| >cd03537 Rieske_RO_Alpha_PrnD This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit of aminopyrrolnitrin oxygenase (PrnD) | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.2e-13 Score=129.79 Aligned_cols=82 Identities=23% Similarity=0.400 Sum_probs=69.5
Q ss_pred CCCCEEEEEeeCCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCC-------------CCCCeE
Q psy2951 493 SSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGM-------------DSLPCY 559 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~-------------~~l~~~ 559 (1466)
.+..++++++.+|+++|++|+|||++++|+.|.++++.|+||||||+|+ .+|+|...|.. .+++.|
T Consensus 23 ~g~~ivl~r~~~g~v~a~~n~CpHrg~~Ls~G~v~~~~l~CpyHGw~Fd-~~G~~~~iP~~~~~~~~~~~~p~~~~~~~~ 101 (123)
T cd03537 23 FGRPCVAWRGATGRAVVMDRHCSHLGANLADGRVKDGCIQCPFHHWRYD-EQGQCVHIPGHSTAVRRLEPVPRGARQPTL 101 (123)
T ss_pred CCeEEEEEEccCCEEEEEcCCCCCCCCCccCCEEeCCEEECCCCCCEEC-CCCCEEECCCCcccccccccCCcccccccE
Confidence 3466777777789999999999999999999999999999999999999 78999877642 357899
Q ss_pred EEEEEcCeEEEEEccc
Q psy2951 560 KVTIQNDDSVVVQARK 575 (1466)
Q Consensus 560 ~v~i~~~~~~~~~~~~ 575 (1466)
++++.+|-+|+....+
T Consensus 102 pv~e~~G~Vwv~~g~~ 117 (123)
T cd03537 102 VTAERYGYVWVWYGSP 117 (123)
T ss_pred eEEEECCEEEEEcCCC
Confidence 9999888888766443
|
PrnD is a novel Rieske N-oxygenase that catalyzes the final step in the pyrrolnitrin biosynthetic pathway, the oxidation of the amino group in aminopyrrolnitrin to a nitro group, forming the antibiotic pyrrolnitrin. The biosynthesis of pyrrolnitrin is one of the best examples of enzyme-catalyzed arylamine oxidation. Although arylamine oxygenases are widely distributed within the microbial world and used in a variety of metabolic reactions, PrnD represents one of only two known examples of arylamine oxygenases or N-oxygenases involved in arylnitro group formation, the other being AurF involved in aureothin biosynthesis. |
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-12 Score=152.01 Aligned_cols=266 Identities=15% Similarity=0.208 Sum_probs=149.9
Q ss_pred CCCcEEEECCchHHHHHHHHHH-hcCCCCcEEEEcCCCCCCCCCCCCchhhc-cCcccccccChhhhccCCcEEEcCCeE
Q psy2951 1065 NKDTFIVVGGGPSGATCVETLR-QNGFTGKLYFITDENFLPYDRVKLSKQLD-IKADSILLRTEEFYKDNDIHVIKGKKI 1142 (1466)
Q Consensus 1065 ~~~~vvIVG~G~aGl~aA~~L~-~~g~~~~i~li~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~v 1142 (1466)
..++|+||||||||+.||..|. +.|. +|+|+|+.+.++. ......... .....+.......+...++++..+.++
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~--~VtlfEk~p~pgG-LvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~V 114 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERV--KVDIFEKLPNPYG-LIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHV 114 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCC--eEEEEecCCCCcc-EEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEe
Confidence 3568999999999999999864 5677 8999999986541 111110000 000111111112234456777644322
Q ss_pred EEeecCCCCeEEecCCcEEecCeEEEecCCCCCcCCCCC---------C------CCcEEEec-------CHHHHH---h
Q psy2951 1143 ISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQAD---------G------VNKVFYLR-------TVEDAN---N 1197 (1466)
Q Consensus 1143 ~~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~---------g------~~~v~~~~-------~~~~~~---~ 1197 (1466)
. +.+..++- ...||+||+|||+.+..++++. | +.|+|..+ ..-++. .
T Consensus 115 G-------~Dvt~eeL-~~~YDAVIlAtGA~~l~ipi~~~~~~~~~~GGe~~~~~l~Gvf~A~dfV~WYNg~p~~~~~~~ 186 (506)
T PTZ00188 115 G-------VDLKMEEL-RNHYNCVIFCCGASEVSIPIGQQDEDKAVSGGETNPRKQNGIFHARDLIYFYNNMYNDVRCKA 186 (506)
T ss_pred c-------CccCHHHH-HhcCCEEEEEcCCCCCCCCcccccceeeeccccccccccCcEEehheEEEeecCCCCcccccc
Confidence 1 11333322 2379999999999776655210 1 12333221 111110 1
Q ss_pred hhcc---cCCCCeEEEEcCCHHHHHHHHHH--------------------hcCCC-eEEEEcCCCcC-------------
Q psy2951 1198 IAPH---ITPESNVVVIGSSFIGMEAAAFC--------------------ASKVK-SVTVVGRGAVP------------- 1240 (1466)
Q Consensus 1198 l~~~---~~~~~~vvVvG~g~~g~e~a~~l--------------------~~~g~-~v~vv~~~~~~------------- 1240 (1466)
+... +...++++|||+|++++++|..| ++.+. +|+++.|....
T Consensus 187 ~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~L~~s~v~~V~ivgRRGp~qaaFT~kElrEL~ 266 (506)
T PTZ00188 187 VDNYLNSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKVIKRHNIKHIYIVGRRGFWQSSFTNAELRELI 266 (506)
T ss_pred ccccccccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHHHHhCCCcEEEEEEecCHHHhCCCHHHHHHHh
Confidence 1111 22467999999999999999964 33232 68888876411
Q ss_pred -Ccc---cc-cHH-----------------------HHHHHHHHHH----------hCCcEEEcCceEEEEEecCCCcEE
Q psy2951 1241 -FQE---SL-GKE-----------------------VGERITKLFE----------SKGVKFVMKANVSSFEKNEKNDVT 1282 (1466)
Q Consensus 1241 -~~~---~~-~~~-----------------------~~~~l~~~~~----------~~gv~~~~~~~v~~i~~~~~g~~~ 1282 (1466)
++. .+ +.+ ..+.+.+... .+-+.|++.....+|. +.++++.
T Consensus 267 ~l~~~~v~v~~~d~~~~~~~~~~~~~~r~~~r~~~~~~~~l~~~~~~~~~~~~~~~~r~i~l~F~~sP~ei~-~~~~~v~ 345 (506)
T PTZ00188 267 SLENTKVILSKKNYDLCCHLKSDEENTNMKKRQHEIFQKMVKNYEEVEKNKEFYKTYKIIEFIFYFEIRQIR-PIDGAMK 345 (506)
T ss_pred cCCCCeEEEChhhhcccccccchhhhhhhhhhhhhHHHHHHHHHHhhccCccCCCCceEEEEEccCCceEEE-CCCCcEe
Confidence 000 00 000 1122333221 1346677777888887 3346777
Q ss_pred EEEcC-----------CC--CeeecCEEEEeeccccCccccccCCceeeCCCeEEeCCCccc--cCCCEEEecccccCCC
Q psy2951 1283 AANLD-----------NG--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLET--NVPGVYAGGDIAYAPL 1347 (1466)
Q Consensus 1283 ~v~l~-----------~g--~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t--~~~~v~a~GD~a~~p~ 1347 (1466)
.+++. +| ++++||+|+-++|+... ++ .|++.| +. +..+ ..+. ..|++|++|.+.+.|.
T Consensus 346 ~v~~~~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~-p~---~g~pFd-~~-~~n~-~grv~~~~~g~Y~~GWiKrGP~ 418 (506)
T PTZ00188 346 NVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKS-NF---AENLYN-QS-VQMF-KEDIGQHKFAIFKAGWFDKGPK 418 (506)
T ss_pred EEEEEEeecccCccCCCCeeEEEEcCEEEEcccccCC-CC---CCCCcc-cc-CCCC-CCcccCCCCCcEEeeecCcCCC
Confidence 77765 33 36899999999999765 21 245555 22 2211 1222 2699999999999887
Q ss_pred cc
Q psy2951 1348 HS 1349 (1466)
Q Consensus 1348 ~~ 1349 (1466)
..
T Consensus 419 Gv 420 (506)
T PTZ00188 419 GN 420 (506)
T ss_pred ce
Confidence 54
|
|
| >cd03532 Rieske_RO_Alpha_VanA_DdmC Rieske non-heme iron oxygenase (RO) family, Vanillate-O-demethylase oxygenase (VanA) and dicamba O-demethylase oxygenase (DdmC) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.5e-13 Score=131.58 Aligned_cols=80 Identities=26% Similarity=0.511 Sum_probs=69.5
Q ss_pred CCCCEEEEEeeCCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCCC------CCCeEEEEEEcC
Q psy2951 493 SSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMD------SLPCYKVTIQND 566 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~------~l~~~~v~i~~~ 566 (1466)
.+.+++++++.+|+++|++|.|||++++|+.|.+.++.|+||||||+|+ .+|++...|+.. +|+.|+++++++
T Consensus 25 ~g~~i~l~r~~~g~~~a~~n~CpH~g~~L~~G~~~~~~i~Cp~Hg~~fd-~~G~~~~~p~~~~~~~~~~l~~~~v~~~~g 103 (116)
T cd03532 25 LGEPVVLYRTQDGRVAALEDRCPHRSAPLSKGSVEGGGLVCGYHGLEFD-SDGRCVHMPGQERVPAKACVRSYPVVERDA 103 (116)
T ss_pred CCceEEEEECCCCCEEEeCCcCCCCCCCccCCcccCCEEEeCCCCcEEc-CCCCEEeCCCCCCCCCccccccCCEEEECC
Confidence 3466666666799999999999999999999999999999999999999 689999888754 799999999888
Q ss_pred eEEEEEc
Q psy2951 567 DSVVVQA 573 (1466)
Q Consensus 567 ~~~~~~~ 573 (1466)
.+|+...
T Consensus 104 ~v~v~~~ 110 (116)
T cd03532 104 LIWIWMG 110 (116)
T ss_pred EEEEEcC
Confidence 8877553
|
The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Vanillate-O-demethylase is a heterodimeric enzyme consisting of a terminal oxygenase (VanA) and reductase (VanB) components. This enzyme reductively catalyzes the conversion of vanillate into protocatechuate and formaldehyde. Protocatechuate and vanillate are important intermediate metabolites in the degrad |
| >cd03476 Rieske_ArOX_small Small subunit of Arsenite oxidase (ArOX) family, Rieske domain; ArOX is a molybdenum/iron protein involved in the detoxification of arsenic, oxidizing it to arsenate | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.7e-13 Score=127.31 Aligned_cols=69 Identities=25% Similarity=0.422 Sum_probs=62.4
Q ss_pred CCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECC-CCeeecCCCCCCCCeEEEEEE--cCeEEEEEc
Q psy2951 504 TSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIA-TGDIEDFPGMDSLPCYKVTIQ--NDDSVVVQA 573 (1466)
Q Consensus 504 ~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~-~G~~~~~p~~~~l~~~~v~i~--~~~~~~~~~ 573 (1466)
+|+++|+++.|||++++|.++. +++.+.||||+|+|+++ +|++..+|+..+|++|+++++ ++.+++..+
T Consensus 45 ~g~~~A~~~~CpH~g~~L~~g~-~~~~v~CP~Hg~~Fdl~tgG~~~~gPa~~~L~~ypv~ve~~~g~V~~~~~ 116 (126)
T cd03476 45 DNDIVAFSALCTHMGCPLTYDP-SNKTFVCPCHFSQFDPARGGQMVSGQATQNLPQIVLEYDEASGDIYAVGV 116 (126)
T ss_pred CCEEEEEeCcCCCCCccccccc-cCCEEEccCcCCEEeCCCCCeEEcCCCCCCCCeEEEEEECCCCEEEEEEe
Confidence 6999999999999999999977 77899999999999997 679999999899999999998 777877653
|
It consists of two subunits, a large subunit similar to members of the DMSO reductase family of molybdenum enzymes and a small subunit with a Rieske-type [2Fe-2S] cluster. The large subunit of ArOX contains the molybdenum site at which the oxidation of arsenite occurs. The small subunit contains a domain homologous to the Rieske domains of the cytochrome bc(1) and cytochrome b6f complexes as well as naphthalene 1,2-dioxygenase. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. |
| >cd03473 Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophosphate-N-acetylneuraminic acid (CMP Neu5Ac) hydroxylase family, N-terminal Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.3e-13 Score=120.73 Aligned_cols=61 Identities=23% Similarity=0.341 Sum_probs=53.6
Q ss_pred CCEEEEEeeCCeEEEEeCCCCCCCcccCC--ceecCCEEEccCCCceEECCCCeeecCCCCCC
Q psy2951 495 TPKTLAQSTTSNIYAVGTKCSHYGAPLVK--GSLGDGRVRCPWHGACFNIATGDIEDFPGMDS 555 (1466)
Q Consensus 495 ~~~~~~~~~~g~~~a~~~~C~H~~~~l~~--g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~~ 555 (1466)
++.+++++.+|++||++|.|||++++|.. |.++++.|.||||+|+||++||++...|...+
T Consensus 30 g~~I~V~~~~G~~~A~~n~CpH~g~pL~~g~g~~~g~~V~CP~Hg~~FDLrTG~~~~~p~~~~ 92 (107)
T cd03473 30 GKKYIIYKSKSELKACKNQCKHQGGLFIKDIEDLDGRTVRCTKHNWKLDVSTMKYVNPPDSFC 92 (107)
T ss_pred CcEEEEEEECCEEEEEcCCCCCCCccccCCcceEeCCEEEeCCCCCEEEcCCCCCccCCcccc
Confidence 45666677899999999999999999998 56889899999999999999999998776544
|
CMP Neu5Ac hydroxylase is the key enzyme for the synthesis of N-glycolylneuraminic acid (NeuGc) from N-acetylneuraminic acid (Neu5Ac), NeuGc and Neu5Ac are members of a family of cell surface sugars called sialic acids. All mammals except humans have both NeuGc variants on their cell surfaces. In humans, the gene encoding CMP Neu5Ac hydroxylase has a mutation within its coding region that abolishes NeuGc production. |
| >TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.5e-13 Score=127.74 Aligned_cols=72 Identities=32% Similarity=0.520 Sum_probs=65.4
Q ss_pred hhhhhhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEEE
Q psy2951 971 AQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQ 1043 (1466)
Q Consensus 971 ~~~~~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~~ 1043 (1466)
++..+|+++|+++.|||.+.+|..|.+.++.+.||||+|+|+++||++...|...+|++|++++ +++.++++
T Consensus 29 ~r~~~g~~~A~~~~CpH~g~~L~~G~~~~~~i~CP~Hg~~Fdl~tG~~~~~p~~~~l~~y~v~v-~~g~v~V~ 100 (101)
T TIGR02377 29 YRTPDDQYYATDGLCTHEYAHLADGLVMDTTVECPKHAGCFDYRTGEALNPPVCVNLKTYPVKV-VDGAVYVD 100 (101)
T ss_pred EEeCCCEEEEEcCcCCCCCCCCCCCEEcCCEEECCccCCEEECCCCcccCCCccCCcceEeEEE-ECCEEEEe
Confidence 3334789999999999999999999999999999999999999999999999888999999999 67777774
|
This model describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members of this family are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H]. |
| >cd03480 Rieske_RO_Alpha_PaO Rieske non-heme iron oxygenase (RO) family, Pheophorbide a oxygenase (PaO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO) and ACD1 (accelerated cell death 1) | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.8e-13 Score=130.97 Aligned_cols=82 Identities=20% Similarity=0.406 Sum_probs=66.9
Q ss_pred CCCCEEEEEee-CCeEEEEeCCCCCCCcccCCceec-CCEEEccCCCceEECCCCeeecCCCC-----------CCCCeE
Q psy2951 493 SSTPKTLAQST-TSNIYAVGTKCSHYGAPLVKGSLG-DGRVRCPWHGACFNIATGDIEDFPGM-----------DSLPCY 559 (1466)
Q Consensus 493 ~~~~~~~~~~~-~g~~~a~~~~C~H~~~~l~~g~~~-~~~~~Cp~H~~~f~~~~G~~~~~p~~-----------~~l~~~ 559 (1466)
.+..++++++. +|+++|++|.|||+|++|+.|.+. ++.|+||||||+|+ .+|+|...|.. .+|+.|
T Consensus 38 ~g~~i~v~r~~~dG~~~A~~n~CpHrga~L~~G~~~~~~~i~CP~Hgw~Fd-~tG~~~~~P~~~~~g~~~~~~~~~l~~y 116 (138)
T cd03480 38 LGRDLVIWWDRNSQQWRAFDDQCPHRLAPLSEGRIDEEGCLECPYHGWSFD-GSGSCQRIPQAAEGGKAHTSPRACVASL 116 (138)
T ss_pred CCeeEEEEEECCCCEEEEEcCCCcCCcCccccceEcCCCEEEeCCCCCEEC-CCCCEEECCCCccccccCCCcccccceE
Confidence 44566666654 999999999999999999999875 56999999999999 58999987643 468899
Q ss_pred EEEEEcCeEEEEEccc
Q psy2951 560 KVTIQNDDSVVVQARK 575 (1466)
Q Consensus 560 ~v~i~~~~~~~~~~~~ 575 (1466)
+++++++.+|+....+
T Consensus 117 pv~v~~g~V~V~~~~~ 132 (138)
T cd03480 117 PTAVRQGLLFVWPGEP 132 (138)
T ss_pred eEEEECCEEEEecCCh
Confidence 9999888777655433
|
ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PaO expression increases upon physical wounding of plant leaves and is thought to catalyze a key step in chlorophyll degradation. The |
| >cd03471 Rieske_cytochrome_b6f Iron-sulfur protein (ISP) component of the b6f complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.3e-13 Score=124.94 Aligned_cols=76 Identities=26% Similarity=0.531 Sum_probs=67.5
Q ss_pred CCCEEEEEeeCCeE--EEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCeEEEE
Q psy2951 494 STPKTLAQSTTSNI--YAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVV 571 (1466)
Q Consensus 494 ~~~~~~~~~~~g~~--~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~~~ 571 (1466)
++..+++++.+|++ ||+++.|||+||+|.++.. ++.+.||||+|+|+ .+|++..+|+..+|+.|+++++++.+++.
T Consensus 33 ~~~~Ilv~~~dg~i~~~A~~~~CpH~G~~l~~~~~-~~~i~CP~Hg~~Fd-~tG~~~~gPa~~~L~~y~V~vedg~I~V~ 110 (126)
T cd03471 33 GDPTYLIVEEDKTIANYGINAVCTHLGCVVPWNAA-ENKFKCPCHGSQYD-ATGKVVRGPAPLSLALVHATVDDDKVVLS 110 (126)
T ss_pred CCeEEEEEeCCCeEEEEEecCCCcCCCCCcCccCC-CCEEEcCCCCCEEC-CCCCEecCCCCCCCceEeEEEECCEEEEE
Confidence 47888888889977 8999999999999988754 45999999999999 78999999998999999999988887764
|
The cytochrome b6f complex from Mastigocladus laminosus, a thermophilic cyanobacterium, contains four large subunits, including cytochrome f, cytochrome b6, the Rieske ISP, and subunit IV; as well as four small hydrophobic subunits, PetG, PetL, PetM, and PetN. Rieske ISP, one of the large subunits of the cytochrome bc-type complexes, is involved in respiratory and photosynthetic electron transfer. The core of the chloroplast b6f complex is similar to the analogous respiratory cytochrome bc(1) complex, but the domain arrangement outside the core and the complement of prosthetic groups are strikingly different. |
| >cd03479 Rieske_RO_Alpha_PhDO_like Rieske non-heme iron oxygenase (RO) family, Phthalate 4,5-dioxygenase (PhDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of PhDO and similar proteins including 3-chlorobenzoate 3,4-dioxygenase (CBDO), phenoxybenzoate dioxygenase (POB-dioxygenase) and 3-nitrobenzoate oxygenase (MnbA) | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.3e-13 Score=132.18 Aligned_cols=81 Identities=22% Similarity=0.381 Sum_probs=68.6
Q ss_pred CCCCEEEEEeeCCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCCC---------CCCeEEEEE
Q psy2951 493 SSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMD---------SLPCYKVTI 563 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~---------~l~~~~v~i 563 (1466)
.+..++++++.+|+++|++|.|||+|++|++|.+.++.++||||||+|+. +|+|...|+.. +|+.|++++
T Consensus 43 ~g~~i~v~r~~~G~v~A~~n~CpHrG~~L~~G~~~~~~i~CP~Hgw~F~~-~G~~~~~P~~~~~~~~~~~~~l~~~~v~~ 121 (144)
T cd03479 43 LGEDLVAFRDTSGRVGLLDEHCPHRGASLVFGRVEECGLRCCYHGWKFDV-DGQCLEMPSEPPDSQLKQKVRQPAYPVRE 121 (144)
T ss_pred CCcEEEEEEeCCCCEEEEcCcCCCCCCcccCCcccCCEEEccCCCcEECC-CCCEEECCCCccccCCccccCcceEeEEE
Confidence 44555555557999999999999999999999998889999999999997 79999888643 579999999
Q ss_pred EcCeEEEEEcc
Q psy2951 564 QNDDSVVVQAR 574 (1466)
Q Consensus 564 ~~~~~~~~~~~ 574 (1466)
+++.+|+....
T Consensus 122 ~~G~I~V~~~~ 132 (144)
T cd03479 122 RGGLVWAYMGP 132 (144)
T ss_pred ECCEEEEECCC
Confidence 88888876543
|
ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PhDO and CBDO are two-component RO systems, containing oxygenase and reductase components. PhDO catalyzes the dihydroxylation of phthalate to form th |
| >cd03469 Rieske_RO_Alpha_N Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.2e-13 Score=129.63 Aligned_cols=78 Identities=26% Similarity=0.460 Sum_probs=66.6
Q ss_pred CCCEEEEEeeCCeEEEEeCCCCCCCcccCCcee-cCCEEEccCCCceEECCCCeeecCCCCC----------CCCeEEEE
Q psy2951 494 STPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSL-GDGRVRCPWHGACFNIATGDIEDFPGMD----------SLPCYKVT 562 (1466)
Q Consensus 494 ~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~-~~~~~~Cp~H~~~f~~~~G~~~~~p~~~----------~l~~~~v~ 562 (1466)
+..+++++..+|+++|++|.|||++++|.+|.+ +++.|+||||+|+|+.+ |++...|+.. +|+.|+++
T Consensus 23 ~~~i~v~r~~~g~~~a~~n~CpH~g~~L~~g~~~~~~~i~Cp~Hg~~Fd~~-G~~~~~P~~~~~~~~~~~~~~L~~~~v~ 101 (118)
T cd03469 23 GEPLVLVRDRDGEVRAFHNVCPHRGARLCEGRGGNAGRLVCPYHGWTYDLD-GKLVGVPREEGFPGFDKEKLGLRTVPVE 101 (118)
T ss_pred CccEEEEECCCCCEEEEEEeCCCCCCEeeeccCCCCCEEECCCCCCEECCC-CcEEeCCcccccCCCCHHHCCCeEEEEE
Confidence 345555544699999999999999999999998 78899999999999998 9999998865 48999999
Q ss_pred EEcCeEEEEE
Q psy2951 563 IQNDDSVVVQ 572 (1466)
Q Consensus 563 i~~~~~~~~~ 572 (1466)
++++.+|+..
T Consensus 102 ~~~g~v~v~~ 111 (118)
T cd03469 102 EWGGLIFVNL 111 (118)
T ss_pred EECCEEEEEc
Confidence 9888777643
|
These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The oxygenase component may contain alpha and beta subunits, with the beta subunit having a purely structural function. Some oxygenase components contain only an alpha subunit. The oxygenase alpha subunit has two domains, an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from the reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Reduced pyridine nucleotide is used as the i |
| >COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.6e-11 Score=133.46 Aligned_cols=276 Identities=14% Similarity=0.110 Sum_probs=164.6
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCccchhc--c--------------------------
Q psy2951 41 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL--D-------------------------- 92 (1466)
Q Consensus 41 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~~~~~~~~~--~-------------------------- 92 (1466)
+...|++.||-||+.|+.|..|.+.+. .....+++.+...+....+.+.- .
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~-~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h 81 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSG-LKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEH 81 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccC-cceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHHHc
Confidence 456899999999999999999998775 33333555543332222111110 0
Q ss_pred -------------cCcccccccChhhhhcCCeEEEeCceEEEe--cccc-cc--EEEecCCcEEecCEEEEccCCCCCCC
Q psy2951 93 -------------IKADSILLRTEEFYKDNDIHVIKGKKIISD--SELN-EK--KIKLQDGTSIDFTKIYLATGSSPRTI 154 (1466)
Q Consensus 93 -------------~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~--~~~~-~~--~v~~~~~~~~~~d~lviAtG~~~~~~ 154 (1466)
+...++..+ -.|....--.+..++.|... .+.+ .. .+.+.++..++++.|||++|.+|..|
T Consensus 82 ~RLy~Fl~~e~f~i~R~Ey~dY-~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~IP 160 (436)
T COG3486 82 GRLYEFLNYETFHIPRREYNDY-CQWAASQLPSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQPYIP 160 (436)
T ss_pred chHhhhhhhhcccccHHHHHHH-HHHHHhhCCccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCCcCCC
Confidence 000011111 22222223456666666521 1111 12 25556667899999999999999987
Q ss_pred CCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhC----CCEEEEEeecCccccc--------cc
Q psy2951 155 SQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASK----VKSVTVVGRGAVPFQE--------SL 222 (1466)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~----g~~Vtlv~~~~~~~~~--------~~ 222 (1466)
+.......-..+++.+.... ...+...++|.|||+|.+|.|+-..|... ..++.|+.|+...++- .+
T Consensus 161 ~~f~~l~~~~vfHss~~~~~-~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~Skf~~e~F 239 (436)
T COG3486 161 PCFRSLIGERVFHSSEYLER-HPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYSKFGLEYF 239 (436)
T ss_pred hHHhCcCccceeehHHHHHh-hHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccchhhhhhc
Confidence 76554443222234443332 22233344599999999999999887643 3458889998654431 12
Q ss_pred CHHHHHH------------------------------H-----HHHHH--hCCcEEEcCceEEEEEecCCCCeE----EE
Q psy2951 223 GKEVGER------------------------------I-----TKLFE--SKGVKFVMKANVSSFEKNEKNDVT----AA 261 (1466)
Q Consensus 223 ~~~~~~~------------------------------l-----~~~l~--~~GV~i~~~~~v~~i~~~~~~~~~----~v 261 (1466)
.|++.+. + ++.+. +..|+++.++.+..++..++|.+. ..
T Consensus 240 ~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~ 319 (436)
T COG3486 240 SPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRYRLTLRHH 319 (436)
T ss_pred CchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCceEEEEEeec
Confidence 2332222 1 11111 346889999999999987665422 11
Q ss_pred EcCCCcEEeccEEEEeeccccCcc-ccccC--CceecCCccEEECCCCCcC----C-CCEEEeccc
Q psy2951 262 NLDNGTTIPADLVIVGIGTVLNTN-YLDGK--GVELNGQKAVVVNEYLETN----V-PGVYAGGDI 319 (1466)
Q Consensus 262 ~~~~g~~i~~D~Vi~a~G~~p~~~-~l~~~--gl~~~~~g~i~vd~~~~t~----~-~~iya~GD~ 319 (1466)
.+++.++++.|.||+|||++...+ |++.. .+..++.|...++..++.. . -.||+.|=.
T Consensus 320 ~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e 385 (436)
T COG3486 320 ETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAE 385 (436)
T ss_pred cCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeecCCCCcceEEEeccc
Confidence 233446889999999999985544 66543 2566788888898876542 1 269988844
|
|
| >cd03467 Rieske Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes | Back alignment and domain information |
|---|
Probab=99.40 E-value=1e-12 Score=122.58 Aligned_cols=73 Identities=32% Similarity=0.710 Sum_probs=65.3
Q ss_pred CCCCEEEEEeeCCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEc
Q psy2951 493 SSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQN 565 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~ 565 (1466)
.+...+++++.+|+++|+++.|||++++|.++..++..+.||||+|+|++++|++..+|+..++..|++++.+
T Consensus 21 ~~~~~~v~~~~~~~~~a~~~~CpH~g~~l~~~~~~~~~i~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~~~~ 93 (98)
T cd03467 21 GGGPVVVVRREGGEVYALSNRCTHQGCPLSEGEGEDGCIVCPCHGSRFDLRTGEVVSGPAPRPLPKYPVKVEG 93 (98)
T ss_pred CCeEEEEEEeCCCEEEEEcCcCCCCCccCCcCccCCCEEEeCCCCCEEeCCCccCcCCCCCCCcCEEEEEEeC
Confidence 3456666666678999999999999999999988888999999999999999999999998899999998864
|
The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis. |
| >TIGR02694 arsenite_ox_S arsenite oxidase, small subunit | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.2e-12 Score=123.28 Aligned_cols=68 Identities=22% Similarity=0.395 Sum_probs=60.4
Q ss_pred eCCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCC-CeeecCCCCCCCCeEEEEEEc-CeEEEE
Q psy2951 503 TTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIAT-GDIEDFPGMDSLPCYKVTIQN-DDSVVV 571 (1466)
Q Consensus 503 ~~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~-G~~~~~p~~~~l~~~~v~i~~-~~~~~~ 571 (1466)
.+|++||+++.|||++++|.++. ++..+.||||+|+|+++| |++..+|+..+|+.|++++++ +.+|.+
T Consensus 47 ~~G~~~A~~~~CpH~g~~L~~~~-~~~~i~CP~Hga~Fdl~tgG~~~~gP~~~~L~~y~v~v~~~G~V~~~ 116 (129)
T TIGR02694 47 PDGDIVAFSTLCTHMGCPVSYSA-DNKTFNCPCHFSVFDPEKGGQQVWGQATQNLPQIVLRVADNGDIFAE 116 (129)
T ss_pred cCCEEEEEeCcCCCCCccccccc-CCCEEEcCCCCCEECCCCCCcEECCCCCCCCCeeEEEEECCCeEEEE
Confidence 58999999999999999999875 677999999999999997 599989998999999999975 566643
|
This model represents the small subunit of an arsenite oxidase complex. It is a Rieske protein and appears to rely on the Tat (twin-arginine translocation) system to cross the membrane. Although this enzyme could run in the direction of arsenate reduction to arsenite in principle, the relevant biological function is arsenite oxidation for energy metabolism, not arsenic resistance. Homologs to both large (TIGR02693) and small subunits that score in the gray zone between the set trusted and noise bit score cutoffs for the respective models are found in Aeropyrum pernix K1 and in Sulfolobus tokodaii str. 7. |
| >PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.9e-12 Score=146.58 Aligned_cols=159 Identities=16% Similarity=0.123 Sum_probs=114.2
Q ss_pred EEECCCHhHHHHH-HHHh----hCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCCeEE
Q psy2951 186 VVIGSSFIGMEAA-AFCA----SKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTA 260 (1466)
Q Consensus 186 vVvGgG~~g~e~A-~~l~----~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~ 260 (1466)
+|++.+.+|+|.+ ..++ ++|.+|+++.+.+..++. .++.+.+.+.+++.|++++++++|.+++.++ +.+..
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG---~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~-~~V~~ 294 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPG---LRLQNALRRAFERLGGRIMPGDEVLGAEFEG-GRVTA 294 (422)
T ss_pred EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCch---HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC-CEEEE
Confidence 6788999999998 5554 579999999887765532 4788889999999999999999999998654 44555
Q ss_pred EEcCCC--cEEeccEEEEeeccccCcccc-----------------------------------ccCCceecCCccEEEC
Q psy2951 261 ANLDNG--TTIPADLVIVGIGTVLNTNYL-----------------------------------DGKGVELNGQKAVVVN 303 (1466)
Q Consensus 261 v~~~~g--~~i~~D~Vi~a~G~~p~~~~l-----------------------------------~~~gl~~~~~g~i~vd 303 (1466)
+...++ ..+.+|.||+|+|+.++..+. ...|+.+|++ ...+|
T Consensus 295 v~~~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~-~~p~~ 373 (422)
T PRK05329 295 VWTRNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDAT-LRPLD 373 (422)
T ss_pred EEeeCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCC-cCccc
Confidence 544444 358999999999987655431 1223333332 22334
Q ss_pred CCCCcCCCCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCC
Q psy2951 304 EYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEK 354 (1466)
Q Consensus 304 ~~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~ 354 (1466)
...++..+|+||+|++.+.+.....| .|. -.|+..|..|+++++..
T Consensus 374 ~~g~~~~~nl~a~G~vl~g~d~~~~~----~g~-Gva~~ta~~a~~~~~~~ 419 (422)
T PRK05329 374 SQGGPVIENLYAAGAVLGGYDPIREG----CGS-GVALATALHAAEQIAEE 419 (422)
T ss_pred CCCCeeccceEEeeehhcCCchHHhC----CCc-hhHHHHHHHHHHHHHHh
Confidence 44455689999999999887654433 222 24888999999998754
|
|
| >cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.1e-12 Score=127.22 Aligned_cols=79 Identities=24% Similarity=0.486 Sum_probs=65.3
Q ss_pred CCEEEEEeeCCeEEEEeCCCCCCCcccCCce--ecCCEEEccCCCceEECCCCeeecC---CC-----CCCCCeEEEEEE
Q psy2951 495 TPKTLAQSTTSNIYAVGTKCSHYGAPLVKGS--LGDGRVRCPWHGACFNIATGDIEDF---PG-----MDSLPCYKVTIQ 564 (1466)
Q Consensus 495 ~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~--~~~~~~~Cp~H~~~f~~~~G~~~~~---p~-----~~~l~~~~v~i~ 564 (1466)
+..+++++.+|+++|++|.|||+|++|+.|. .+++.|+||||||+|++++|+|... |+ ..+|+.|++++.
T Consensus 36 g~~i~l~r~~g~v~A~~n~CpHrg~~L~~g~~~~~~~~i~Cp~Hgw~Fdl~tG~~~~~~~~p~~~~~~~~~L~~ypv~~~ 115 (136)
T cd03548 36 GEPILLRRVDGKVYALKDRCLHRGVPLSKKPECFTKGTITCWYHGWTYRLDDGKLVTILANPDDPLIGRTGLKTYPVEEA 115 (136)
T ss_pred CcEEEEEecCCEEEEEeCcCcCCCCccccCcccccCCEEEecCCccEEeCCCccEEEcccCCCccccccCCCceEeEEEE
Confidence 4456666789999999999999999999885 5678999999999999999999853 32 346899999998
Q ss_pred cCeEEEEEc
Q psy2951 565 NDDSVVVQA 573 (1466)
Q Consensus 565 ~~~~~~~~~ 573 (1466)
++.+|+...
T Consensus 116 ~g~V~v~~~ 124 (136)
T cd03548 116 KGMIFVFVG 124 (136)
T ss_pred CCEEEEEeC
Confidence 887776543
|
The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the |
| >cd03477 Rieske_YhfW_C YhfW family, C-terminal Rieske domain; YhfW is a protein of unknown function with an N-terminal DadA-like (glycine/D-amino acid dehydrogenase) domain and a C-terminal Rieske domain | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.1e-12 Score=118.17 Aligned_cols=70 Identities=17% Similarity=0.320 Sum_probs=59.2
Q ss_pred CCCCEEEEEeeCCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEE
Q psy2951 493 SSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQ 564 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~ 564 (1466)
++..+++++..+|+++|+++.|||+|++|.+|.. +..+.||||+|+|+ .+|+++..|+..+|..|+++..
T Consensus 19 ~g~~v~v~r~~~g~~~A~~~~CpH~g~~l~~g~~-~~~i~CP~Hg~~Fd-~~G~~~~~Pa~~~l~~y~v~~~ 88 (91)
T cd03477 19 GGKRLAVYRDEDGVLHTVSATCTHLGCIVHWNDA-EKSWDCPCHGSRFS-YDGEVIEGPAVSGLKPADDAPI 88 (91)
T ss_pred CCEEEEEEECCCCCEEEEcCcCCCCCCCCcccCC-CCEEECCCCCCEEC-CCCcEeeCCCCCCCCeeEeecc
Confidence 3344444444699999999999999999998865 45999999999999 6899999999999999999653
|
The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. It is commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. YhfW is found in bacteria, some eukaryotes and archaea. |
| >PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.4e-12 Score=147.77 Aligned_cols=160 Identities=16% Similarity=0.117 Sum_probs=114.8
Q ss_pred EEEECCChHHHHHH-HHHh----ccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceE
Q psy2951 737 VVVIGSSFIGMEAA-AFCA----SKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVT 811 (1466)
Q Consensus 737 vvVvG~G~~g~e~A-~~l~----~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~ 811 (1466)
=.|++.+.+|+|.+ ..++ ++|.+|+++.+.+..+.. .++.+.+.+.+++.|+++++++++.+++.. ++.+.
T Consensus 218 ~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG---~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~-~~~V~ 293 (422)
T PRK05329 218 EAVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPG---LRLQNALRRAFERLGGRIMPGDEVLGAEFE-GGRVT 293 (422)
T ss_pred CEEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCch---HHHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEE
Confidence 37789999999998 6665 469999999888765532 478888999999999999999999999843 44455
Q ss_pred EEECCCCc--EEecCEEEEccccccCcccc-----------------------------------ccCCceeeCCCcEEe
Q psy2951 812 AANLDNGT--TIPADLVIVGIGTVLNTNYL-----------------------------------DGKGVELNGQKAVVV 854 (1466)
Q Consensus 812 ~v~~~~g~--~i~~D~vi~a~G~~p~~~~~-----------------------------------~~~gl~~~~~G~i~v 854 (1466)
.+...+++ .+++|.||+|+|..+...+. ..+|+.+|+. +..+
T Consensus 294 ~v~~~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~-~~p~ 372 (422)
T PRK05329 294 AVWTRNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDAT-LRPL 372 (422)
T ss_pred EEEeeCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCC-cCcc
Confidence 55544553 58999999999987665441 1233443333 3334
Q ss_pred CCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccC
Q psy2951 855 NEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEK 906 (1466)
Q Consensus 855 d~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~ 906 (1466)
|...++..+|+||+|++...++....+ .+. -.|+..|..||++|+..
T Consensus 373 ~~~g~~~~~nl~a~G~vl~g~d~~~~~----~g~-Gva~~ta~~a~~~~~~~ 419 (422)
T PRK05329 373 DSQGGPVIENLYAAGAVLGGYDPIREG----CGS-GVALATALHAAEQIAEE 419 (422)
T ss_pred cCCCCeeccceEEeeehhcCCchHHhC----CCc-hhHHHHHHHHHHHHHHh
Confidence 444555689999999999887654211 111 47889999999988753
|
|
| >COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-10 Score=127.53 Aligned_cols=277 Identities=16% Similarity=0.156 Sum_probs=171.3
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcc------------c-------------Cc
Q psy2951 593 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD------------I-------------KA 647 (1466)
Q Consensus 593 ~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~------------~-------------~~ 647 (1466)
....|++.||-||+-|+.|..|...+. .....+|+.+.+.++...+...-. . ..
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~-~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h 81 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSG-LKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEH 81 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccC-cceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHHHc
Confidence 356899999999999999999998874 346777877654433322211100 0 00
Q ss_pred ccc---------------cccCHhHhhhCCcEEEEceEEEEec--cccc---cEEEccCCCEEecCEEEEcCCCCCCcCC
Q psy2951 648 DSI---------------LLRTEEFYKDNDIHVIKGKKIISDS--ELNE---KKIKLQDGTSIDFTKIYLATGSSPRTIS 707 (1466)
Q Consensus 648 ~~~---------------~~~~~~~~~~~gv~~~~~~~v~~i~--~~~~---~~v~~~~~~~~~~d~lviAtG~~~~~~~ 707 (1466)
..+ ...+-.|....--.++++++|+.|. +.+. ..+.+.++..+.+..|||++|.+|+.|+
T Consensus 82 ~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~IP~ 161 (436)
T COG3486 82 GRLYEFLNYETFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQPYIPP 161 (436)
T ss_pred chHhhhhhhhcccccHHHHHHHHHHHHhhCCccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCCcCCCh
Confidence 000 1111233334445678899888441 3222 2256667779999999999999999997
Q ss_pred CCCCCC--cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhcc----CCeEEEEeecCccCcc--------c
Q psy2951 708 QADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASK----VKSVTVVGRGAVPFQE--------S 773 (1466)
Q Consensus 708 ~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~----g~~V~lv~~~~~~~~~--------~ 773 (1466)
....+. .+++ +.+..... ..+...++|.|||||-+|.|+-..|... ..++.++.|+...++. .
T Consensus 162 ~f~~l~~~~vfH--ss~~~~~~-~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~Skf~~e~ 238 (436)
T COG3486 162 CFRSLIGERVFH--SSEYLERH-PELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYSKFGLEY 238 (436)
T ss_pred HHhCcCccceee--hHHHHHhh-HHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccchhhhhh
Confidence 442333 3443 33332222 2222344599999999999999888654 3457889888753321 1
Q ss_pred cCHHHH------------------------------HHHHHHH-------HhcCcEEEccceEEEEEecCCCceEEEEC-
Q psy2951 774 LGKEVG------------------------------ERITKLF-------ESKGVKFVMKANVSSFEKNEKNDVTAANL- 815 (1466)
Q Consensus 774 ~~~~~~------------------------------~~~~~~l-------~~~gv~~~~~~~v~~i~~~~~~~~~~v~~- 815 (1466)
+.++.. +.+.+.| .+..|.++.++++..++...+|+ ..+.+
T Consensus 239 F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~-~~l~~~ 317 (436)
T COG3486 239 FSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGR-YRLTLR 317 (436)
T ss_pred cCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCce-EEEEEe
Confidence 112211 2222221 13467888999999999665553 23332
Q ss_pred ----CCCcEEecCEEEEccccccCcc-ccccCC--ceeeCCCcEEeCCCCCCC-----CCCeEEecccccc
Q psy2951 816 ----DNGTTIPADLVIVGIGTVLNTN-YLDGKG--VELNGQKAVVVNEYLETN-----VPGVYAGGDIAYA 874 (1466)
Q Consensus 816 ----~~g~~i~~D~vi~a~G~~p~~~-~~~~~g--l~~~~~G~i~vd~~~~t~-----~~~iya~GD~~~~ 874 (1466)
++.++++.|.||+|||++...+ |++.+. +..+++|...++..++.. .-.||+.|-+...
T Consensus 318 ~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~ht 388 (436)
T COG3486 318 HHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELHT 388 (436)
T ss_pred eccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeecCCCCcceEEEecccccc
Confidence 3345889999999999985544 665543 556788889998776532 2369999865443
|
|
| >cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox) | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-12 Score=120.67 Aligned_cols=66 Identities=64% Similarity=1.308 Sum_probs=61.1
Q ss_pred hhhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEE
Q psy2951 974 AERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSV 1040 (1466)
Q Consensus 974 ~~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~ 1040 (1466)
.+|+++|+.+.|||.+++|..|.+.++.+.||||+|.|++++|++...|...+|++|++++ +++.+
T Consensus 29 ~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~CP~Hg~~Fdl~tG~~~~~p~~~~l~~~~v~~-~~g~i 94 (95)
T cd03478 29 QGGEVHAIGAKCPHYGAPLAKGVLTDGRIRCPWHGACFNLRTGDIEDAPALDSLPCYEVEV-EDGRV 94 (95)
T ss_pred ECCEEEEEcCcCcCCCCccCCCeEeCCEEEcCCCCCEEECCCCcCcCCCccCCcceEEEEE-ECCEE
Confidence 3789999999999999999999999999999999999999999999999988999999999 45554
|
The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner. |
| >PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.7e-12 Score=121.99 Aligned_cols=71 Identities=32% Similarity=0.615 Sum_probs=65.1
Q ss_pred hhhhhhhhcCCCCCCCccccceeecC-CEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEEEcc
Q psy2951 974 AERNIYAVGTKCSHYGAPLVKGSLGD-GRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQAR 1045 (1466)
Q Consensus 974 ~~g~~~a~~~~C~h~g~~l~~g~~~~-~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~~~~ 1045 (1466)
.+|+++|+++.|||.+++|..|.+.+ +.+.||||+|+||++||++...|...+|+.|++++ +++.+++..+
T Consensus 31 ~~g~~~A~~~~CpH~g~~L~~G~~~~~~~i~Cp~Hg~~Fd~~tG~~~~~p~~~~l~~y~v~v-~~g~v~v~~~ 102 (106)
T PRK09965 31 VGGEFYAIDDRCSHGNASLSEGYLEDDATVECPLHAASFCLRTGKALCLPATDPLRTYPVHV-EGGDIFIDLP 102 (106)
T ss_pred ECCEEEEEeCcCCCCCCCCCceEECCCCEEEcCCCCCEEEcCCCCeeCCCCCCCcceEeEEE-ECCEEEEEcc
Confidence 37899999999999999999999988 79999999999999999999888888999999999 6888888654
|
|
| >PRK09511 nirD nitrite reductase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-12 Score=121.82 Aligned_cols=68 Identities=19% Similarity=0.363 Sum_probs=59.2
Q ss_pred hhhhhhhhcCCCCCCCcc-ccceeecC--C--EEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEEE
Q psy2951 974 AERNIYAVGTKCSHYGAP-LVKGSLGD--G--RVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQ 1043 (1466)
Q Consensus 974 ~~g~~~a~~~~C~h~g~~-l~~g~~~~--~--~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~~ 1043 (1466)
.+|++||+++.|||.+++ |..|.+.+ + .+.||||+|+||++||++...|. .+|++|+|++ +++.+++.
T Consensus 35 ~~g~~~A~~n~CpH~~~~~L~~G~~~~~~g~~~V~CP~H~~~Fdl~TG~~~~~~~-~~l~typV~v-e~g~V~v~ 107 (108)
T PRK09511 35 HDEQVFAISNIDPFFQASVLSRGLIAEHQGELWVASPLKKQRFRLSDGLCMEDEQ-FSVKHYDARV-KDGVVQLR 107 (108)
T ss_pred CCCEEEEEeCcCCCCCCcccCCceEccCCCeEEEECCCCCCEEECCCcccCCCCC-ccEeeEeEEE-ECCEEEEe
Confidence 368999999999999985 99999842 2 49999999999999999998776 4899999999 68888774
|
|
| >PLN02281 chlorophyllide a oxygenase | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.2e-12 Score=145.34 Aligned_cols=81 Identities=20% Similarity=0.419 Sum_probs=70.5
Q ss_pred CCCCEEEEEeeCCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCC----CCCCeEEEEEEcCeE
Q psy2951 493 SSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGM----DSLPCYKVTIQNDDS 568 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~----~~l~~~~v~i~~~~~ 568 (1466)
.+..++++++.+|+++|++|+|||+++||+.|.++++.|+||||||+|+ .+|+|...|+. .+++.|+++++++.+
T Consensus 241 lG~~IVL~R~~dG~v~A~~D~CPHRgaPLs~G~v~g~~L~CPYHGW~FD-~dG~cv~iP~~~~~~~~l~sYPV~e~~GlV 319 (536)
T PLN02281 241 FEQPWVIFRGEDGKPGCVRNTCAHRACPLDLGTVNEGRIQCPYHGWEYS-TDGECKKMPSTKLLKVKIKSLPCLEQEGMI 319 (536)
T ss_pred CCEEEEEEECCCCeEEEEeCcCcCCCCccccceeeCCEEEeCCCCCEEC-CCCCEeeCCCCccccCCcceEeEEEECCEE
Confidence 3466666666789999999999999999999999999999999999999 68999999875 368899999988888
Q ss_pred EEEEcc
Q psy2951 569 VVVQAR 574 (1466)
Q Consensus 569 ~~~~~~ 574 (1466)
|+....
T Consensus 320 wV~lgd 325 (536)
T PLN02281 320 WIWPGD 325 (536)
T ss_pred EEEeCC
Confidence 876643
|
|
| >cd03531 Rieske_RO_Alpha_KSH The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH) | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.9e-12 Score=121.17 Aligned_cols=90 Identities=14% Similarity=0.302 Sum_probs=72.8
Q ss_pred CCeEEEEEeecCchhhhhhhhhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCC------CCCCC
Q psy2951 955 ADKVLAILTVGMDPLAAQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPG------MDSLP 1028 (1466)
Q Consensus 955 ~~~i~g~~~~g~~~~~~~~~~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~------~~~l~ 1028 (1466)
++++..+.+.+...++++..+|+++|+.+.|||.+++|..|.++++.+.||||||+|++ +|++...|. ...|+
T Consensus 13 ~g~~~~~~~~g~~i~l~r~~~g~~~a~~n~CpH~ga~L~~G~~~~~~i~CP~Hg~~fd~-~G~~~~~p~~~~~p~~~~l~ 91 (115)
T cd03531 13 DGKPHGVEAFGTKLVVFADSDGALNVLDAYCRHMGGDLSQGTVKGDEIACPFHDWRWGG-DGRCKAIPYARRVPPLARTR 91 (115)
T ss_pred CCCeEEEEECCeEEEEEECCCCCEEEEcCcCCCCCCCCccCcccCCEEECCCCCCEECC-CCCEEECCcccCCCcccccc
Confidence 34444445455555555556899999999999999999999999999999999999998 999987653 45689
Q ss_pred eEEEEEEcCCEEEEEcch
Q psy2951 1029 CYKVTIQNDDSVVVQARK 1046 (1466)
Q Consensus 1029 ~~~v~~~~~~~~~~~~~~ 1046 (1466)
.|++++ +++.+++....
T Consensus 92 ~ypv~~-~~g~v~v~~~~ 108 (115)
T cd03531 92 AWPTLE-RNGQLFVWHDP 108 (115)
T ss_pred eEeEEE-ECCEEEEECCC
Confidence 999998 78888886543
|
The terminal oxygenase component of KSH is a key enzyme in the microbial steroid degradation pathway, catalyzing the 9 alpha-hydroxylation of 4-androstene-3,17-dione (AD) and 1,4-androstadiene-3,17-dione (ADD). KSH is a two-component class IA monooxygenase, with terminal oxygenase (KshA) and oxygenase reductase (KshB) components. KSH activity has been found in many actino- and proteo- bacterial genera including Rhodococcus, Nocardia, Arthrobacter, Mycobacterium, and Burkholderia. |
| >cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO) | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.5e-12 Score=117.21 Aligned_cols=67 Identities=33% Similarity=0.678 Sum_probs=62.2
Q ss_pred hhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEE
Q psy2951 975 ERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVV 1042 (1466)
Q Consensus 975 ~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~ 1042 (1466)
+++++|+.+.|||.+++|..|.+.++.+.||||||+|++++|++...|+..+|+.|++++ .++.+++
T Consensus 31 ~~~~~a~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~fd~~~G~~~~~p~~~~L~~~~v~~-~~g~v~v 97 (98)
T cd03528 31 DGEFYATDDLCTHGDASLSEGYVEGGVIECPLHGGRFDLRTGKALSLPATEPLKTYPVKV-EDGDVYV 97 (98)
T ss_pred CCEEEEECCcCCCCCCCCCCCeEeCCEEEeCCcCCEEECCCCcccCCCCCCCcceEeEEE-ECCEEEE
Confidence 568999999999999999999999999999999999999999999999988999999999 6777766
|
The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in |
| >COG2146 {NirD} Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.9e-12 Score=116.18 Aligned_cols=74 Identities=32% Similarity=0.636 Sum_probs=65.0
Q ss_pred hhhhhhhhhhhhcCCCCCCCccccceeecCC-EEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEEEc
Q psy2951 970 AAQFAERNIYAVGTKCSHYGAPLVKGSLGDG-RVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQA 1044 (1466)
Q Consensus 970 ~~~~~~g~~~a~~~~C~h~g~~l~~g~~~~~-~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~~~ 1044 (1466)
+++..+|++||+.+.|||.+++|..|.+.+. .+.||+|+++||++||++++.|....|++|++++ +++.++++.
T Consensus 31 ~~~~~~g~v~A~~n~CpH~~~~l~~g~v~~~~~i~Cp~H~a~Fdl~tG~~~~~p~~~~l~~y~vrv-e~g~v~v~~ 105 (106)
T COG2146 31 LVVRADGEVFAIDNRCPHAGAPLSRGLVEGDETVVCPLHGARFDLRTGECLEPPAGKTLKTYPVRV-EGGRVFVDL 105 (106)
T ss_pred EEEecCCEEEEEeCcCCCCCCcccccEeCCCCEEECCccCCEEEcCCCceecCCCCCceeEEeEEE-ECCEEEEec
Confidence 3445688999999999999999999999986 5999999999999999999988754499999999 588888753
|
|
| >PRK13474 cytochrome b6-f complex iron-sulfur subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.2e-11 Score=123.07 Aligned_cols=77 Identities=27% Similarity=0.503 Sum_probs=67.2
Q ss_pred CCCCEEEEEeeCCeE--EEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCeEEE
Q psy2951 493 SSTPKTLAQSTTSNI--YAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVV 570 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~--~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~~ 570 (1466)
.+...+++++.+|++ ||+++.|||+||+|.++..+ +.+.||||+++|+ .+|.+..+|+..+|+.|+++++++.+++
T Consensus 84 ~g~~~~lv~~~~g~~~~~a~~~~CtH~gc~l~~~~~~-~~~~CP~Hgs~Fd-~tG~~~~gPa~~~L~~y~v~v~~g~v~v 161 (178)
T PRK13474 84 KGDPTYLVVEEDGTIASYGINAVCTHLGCVVPWNSGE-NKFQCPCHGSQYD-ATGKVVRGPAPLSLALVHVTVEDDKVLF 161 (178)
T ss_pred CCCeEEEEEeCCCEEEEEEecCCCCCCCCccccccCC-CEEEecCcCCEEC-CCCCCccCCCCCCCCeEeEEEECCEEEE
Confidence 445557888889999 78899999999999988755 4999999999999 7899999999999999999998887765
Q ss_pred E
Q psy2951 571 V 571 (1466)
Q Consensus 571 ~ 571 (1466)
-
T Consensus 162 ~ 162 (178)
T PRK13474 162 S 162 (178)
T ss_pred E
Confidence 3
|
|
| >cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-11 Score=115.29 Aligned_cols=70 Identities=26% Similarity=0.596 Sum_probs=61.2
Q ss_pred hhhhhhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEE
Q psy2951 971 AQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVV 1042 (1466)
Q Consensus 971 ~~~~~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~ 1042 (1466)
++..+|+++|+.+.|||.+++|..|.+.++.+.||||||+|++++|++.. |...+|+.|++++ +++.+++
T Consensus 28 ~r~~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~~G~~~~-p~~~~l~~y~v~v-~~g~v~v 97 (98)
T cd03530 28 FRTADDEVFALENRCPHKGGPLSEGIVHGEYVTCPLHNWVIDLETGEAQG-PDEGCVRTFPVKV-EDGRVYL 97 (98)
T ss_pred EEeCCCCEEEEcCcCCCCCCCccCCEEcCCEEECCCCCCEEECCCCCCCC-CCCCccceEeEEE-ECCEEEE
Confidence 44446899999999999999999999999999999999999999999876 5556899999999 5777765
|
The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium. |
| >cd03529 Rieske_NirD Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.6e-12 Score=116.83 Aligned_cols=71 Identities=27% Similarity=0.404 Sum_probs=59.7
Q ss_pred hhhhhhhhhhhhcCCCCCCCcc-ccceeec----CCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEE
Q psy2951 970 AAQFAERNIYAVGTKCSHYGAP-LVKGSLG----DGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVV 1042 (1466)
Q Consensus 970 ~~~~~~g~~~a~~~~C~h~g~~-l~~g~~~----~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~ 1042 (1466)
+++..+|++||+.+.|||.+++ |..|.+. +..+.||||+|.|+++||++...|.. +|+.|++++ +++.+++
T Consensus 27 l~r~~~g~~~A~~~~CpH~g~~ll~~G~~~~~~~~~~i~Cp~Hg~~Fdl~tG~~~~~p~~-~l~~y~v~~-~~g~v~v 102 (103)
T cd03529 27 IFRLPGREVYAVQNMDPHSRANVLSRGIVGDIGGEPVVASPLYKQHFSLKTGRCLEDEDV-SVATFPVRV-EDGEVYV 102 (103)
T ss_pred EEEeCCCeEEEEeCcCCCCCCcccCCceEcccCCCeEEECCCCCCEEEcCCCCccCCCCc-cEeeEeEEE-ECCEEEE
Confidence 3444455999999999999997 7888874 24899999999999999999998865 799999999 5777776
|
Members include bacterial and fungal proteins. The bacterial NirD contains a single Rieske domain while fungal proteins have a C-terminal Rieske domain in addition to several other domains. The fungal NirD is involved in nutrient acquisition, functioning at the soil/fungus interface to control nutrient exchange between the fungus and the host plant. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The Rieske [2Fe-2S] cluster is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In this family, only a few members contain these residues. Other members may have lost the ability to bind the Rieske [2Fe-2S] cluster. |
| >cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.2e-11 Score=117.48 Aligned_cols=73 Identities=23% Similarity=0.371 Sum_probs=64.7
Q ss_pred hhhhhhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEEEcc
Q psy2951 971 AQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQAR 1045 (1466)
Q Consensus 971 ~~~~~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~~~~ 1045 (1466)
++..+|+++|+.+.|||.+++|..|.++++.+.||||||+|++++|++.. |...+|+.|++++ .++.+++...
T Consensus 28 ~~~~~g~~~A~~n~CpH~g~~L~~g~~~g~~i~CP~Hg~~Fdl~~G~~~~-~~~~~L~~~~v~v-~~g~v~v~~~ 100 (108)
T cd03474 28 VAPEGGEFRAFQGICPHQEIPLAEGGFDGGVLTCRAHLWQFDADTGEGLN-PRDCRLARYPVKV-EGGDILVDTE 100 (108)
T ss_pred EEccCCeEEEEcCcCCCCCCCcccCcccCCEEEeCCcCCEEECCCccccC-CCCCccceEeEEE-ECCEEEEeCC
Confidence 34457899999999999999999999998999999999999999999986 5567899999999 7888888654
|
T4mo is a four-protein complex that catalyzes the NADH- and O2-dependent hydroxylation of toluene to form p-cresol. T4mo consists of an NADH oxidoreductase (T4moF), a diiron hydroxylase (T4moH), a catalytic effector protein (T4moD), and a Rieske ferredoxin (T4moC). T4moC contains a Rieske domain and functions as an obligate electron carrier between T4moF and T4moH. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes. |
| >cd04338 Rieske_RO_Alpha_Tic55 Tic55 is a 55kDa LLS1-related non-heme iron oxygenase associated with protein transport through the plant inner chloroplast membrane | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.2e-11 Score=121.08 Aligned_cols=84 Identities=20% Similarity=0.348 Sum_probs=68.7
Q ss_pred EEeecCchhhhhhhhhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCCC---------CCCCeEE
Q psy2951 961 ILTVGMDPLAAQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGM---------DSLPCYK 1031 (1466)
Q Consensus 961 ~~~~g~~~~~~~~~~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~---------~~l~~~~ 1031 (1466)
+.+.+...++.+..+|+++|+.+.|||.+++|..|.+.++.+.||||+|+|| .+|++...|.. ..|++|+
T Consensus 35 ~~v~g~~ivl~r~~~G~v~A~~n~CpHrga~L~~G~~~~~~i~CP~Hgw~Fd-~~G~~~~~P~~~~~~~~~~~~~l~~y~ 113 (134)
T cd04338 35 LSVYDEPFVLFRDQNGQLRCLEDRCPHRLAKLSEGQLIDGKLECLYHGWQFG-GEGKCVKIPQLPADAKIPKNACVKSYE 113 (134)
T ss_pred EEECCceEEEEEcCCCCEEEEcCcCCCCcCcccCCeecCCEEEccCCCCEEC-CCCCEEECCCCCccCCCCcccCcceEe
Confidence 3334444444555688999999999999999999999999999999999999 59999876543 4589999
Q ss_pred EEEEcCCEEEEEcch
Q psy2951 1032 VTIQNDDSVVVQARK 1046 (1466)
Q Consensus 1032 v~~~~~~~~~~~~~~ 1046 (1466)
+++ .++.+++....
T Consensus 114 v~~-~~G~V~V~~~~ 127 (134)
T cd04338 114 VRD-SQGVVWMWMSE 127 (134)
T ss_pred EEE-ECCEEEEEcCC
Confidence 998 78888887643
|
This domain represents the N-terminal Rieske domain of the Tic55 oxygenase alpha subunit. Tic55 is closely related to the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO), Ptc52, and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. |
| >cd04337 Rieske_RO_Alpha_Cao Cao (chlorophyll a oxygenase) is a rieske non-heme iron-sulfur protein located within the plastid-envelope inner and thylakoid membranes, that catalyzes the conversion of chlorophyllide a to chlorophyllide b | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-11 Score=119.61 Aligned_cols=86 Identities=19% Similarity=0.404 Sum_probs=71.3
Q ss_pred EEEEEeecCchhhhhhhhhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCCCC----CCCeEEEE
Q psy2951 958 VLAILTVGMDPLAAQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMD----SLPCYKVT 1033 (1466)
Q Consensus 958 i~g~~~~g~~~~~~~~~~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~----~l~~~~v~ 1033 (1466)
...+.+.+...++++..+|+++|+.+.|||.+++|..|.+.++.+.||||||+|| .+|++...|... .|++|+++
T Consensus 32 ~~~~~v~g~~l~l~r~~~g~v~A~~n~CpH~g~~L~~G~~~~~~i~CP~Hgw~Fd-~tG~~~~~P~~~~~~~~l~~y~v~ 110 (129)
T cd04337 32 MVPFELFGQPWVLFRDEDGTPGCIRDECAHRACPLSLGKVIEGRIQCPYHGWEYD-GDGECTKMPSTKCLNVGIAALPCM 110 (129)
T ss_pred eEEEEECCcEEEEEECCCCcEEEEeCcCCCCcCCcccCcEeCCEEEeCCCCCEEC-CCCCEEeCCcCCCccCCcceEeEE
Confidence 3333444444445555688999999999999999999999999999999999999 999999988764 79999999
Q ss_pred EEcCCEEEEEcc
Q psy2951 1034 IQNDDSVVVQAR 1045 (1466)
Q Consensus 1034 ~~~~~~~~~~~~ 1045 (1466)
+ +++.++++..
T Consensus 111 v-~~g~V~V~~~ 121 (129)
T cd04337 111 E-QDGMIWVWPG 121 (129)
T ss_pred E-ECCEEEEEcC
Confidence 8 7888888753
|
CAO is found not only in plants but also in chlorophytes and prochlorophytes. This domain represents the N-terminal rieske domain of the oxygenase alpha subunit. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Cao is closely related to several other plant RO's including Tic 55, a 55 kDa protein associated with protein transport through the inner |
| >PLN00095 chlorophyllide a oxygenase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=3e-11 Score=133.45 Aligned_cols=80 Identities=21% Similarity=0.394 Sum_probs=68.3
Q ss_pred CCCCEEEEEeeCCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCC------CCCCeEEEEEEcC
Q psy2951 493 SSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGM------DSLPCYKVTIQND 566 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~------~~l~~~~v~i~~~ 566 (1466)
.+..++++++.+|+++|++|.|||++++|+.|.++++.|.||||||+|+. +|+|...|.. .+++.|++++++|
T Consensus 94 ~GepIVL~Rd~dGqv~Af~N~CPHRGapLSeG~v~~g~L~CPYHGW~FD~-~G~C~~iP~~~~~~~~~~v~tYPV~e~dG 172 (394)
T PLN00095 94 FNVPWVLFRDADGEAGCIKDECAHRACPLSLGKLVDGKAQCPYHGWEYET-GGECAKMPSCKKFLKGVFADAAPVIERDG 172 (394)
T ss_pred CCEEEEEEECCCCCEEEEeccCCCCCCccccCcccCCEEEecCCCcEECC-CCCEeeCCCccccccccccceEEEEEECC
Confidence 34666666667899999999999999999999999999999999999998 7999988854 2467999999888
Q ss_pred eEEEEEc
Q psy2951 567 DSVVVQA 573 (1466)
Q Consensus 567 ~~~~~~~ 573 (1466)
.+|+-..
T Consensus 173 lVwVw~G 179 (394)
T PLN00095 173 FIFLWAG 179 (394)
T ss_pred EEEEEeC
Confidence 8876543
|
|
| >PF13806 Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A 3C0D_A 3D89_A 2JZA_A | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-11 Score=114.48 Aligned_cols=71 Identities=35% Similarity=0.688 Sum_probs=62.8
Q ss_pred hhhhhhhhhhhcCCCCC-CCccccceeecCC----EEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEEE
Q psy2951 971 AQFAERNIYAVGTKCSH-YGAPLVKGSLGDG----RVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQ 1043 (1466)
Q Consensus 971 ~~~~~g~~~a~~~~C~h-~g~~l~~g~~~~~----~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~~ 1043 (1466)
++..++++||+++.||| .+.+|+.|.+.+. .+.||+|++.|+++||++++.+. .+|++|+|++ +++.++++
T Consensus 29 f~~~~~~vyAi~n~Cph~~~~~Ls~G~i~~~~g~~~V~CPlH~~~f~L~tG~~~~~~~-~~l~~ypvrv-~~g~V~V~ 104 (104)
T PF13806_consen 29 FRVRDGEVYAIDNRCPHSQAGPLSDGLIGDGNGEPCVACPLHKWRFDLRTGECLEDPD-VSLRTYPVRV-EDGQVYVE 104 (104)
T ss_dssp EEESTTEEEEEESBETTTTSSCGCGSEEEECTTEEEEEETTTTEEEETTTTEESSECS-EBSBEEEEEE-CTTEEEEE
T ss_pred EEeCCCCEEEEeccCCccCCcccceeEEccCCCCEEEECCCCCCeEECCCcCcCCCCC-CcEEeEEEEE-ECCEEEEC
Confidence 33347899999999999 7999999999876 89999999999999999998766 6789999999 68888773
|
|
| >cd03470 Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) component of the bc(1) complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.6e-11 Score=113.23 Aligned_cols=66 Identities=23% Similarity=0.351 Sum_probs=58.9
Q ss_pred CCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCeEEE
Q psy2951 504 TSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVV 570 (1466)
Q Consensus 504 ~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~~ 570 (1466)
+++++|+++.|||.||.+.++...++.+.||||||+|++. |+...+|+..+|+.|+++++++..++
T Consensus 59 ~~~~~a~~~~CtH~gc~~~~~~~~~~~~~CPcHgs~Fdl~-G~~~~gPa~~~L~~~p~~~~~~~~l~ 124 (126)
T cd03470 59 KPEWLVVIGICTHLGCVPTYRAGDYGGFFCPCHGSHYDAS-GRIRKGPAPLNLEVPPYKFLSDTTIV 124 (126)
T ss_pred CCcEEEEeCcCCCCCCeeccccCCCCEEEecCcCCEECCC-CeEecCCCCCCCCeeeEEEecCCEEE
Confidence 7799999999999999998877677899999999999995 99999999999999999997755443
|
The bc(1) complex is a multisubunit enzyme found in many different organisms including uni- and multi-cellular eukaryotes, plants (in their mitochondria) and bacteria. The cytochrome bc(1) and b6f complexes are central components of the respiratory and photosynthetic electron transport chains, respectively, which carry out similar core electron and proton transfer steps. The bc(1) and b6f complexes share a common core structure of three catalytic subunits: cyt b, the Rieske ISP, and either a cyt c1 in the bc(1) complex or cyt f in the b6f complex, which are arranged in an integral membrane-bound dimeric complex. While the core of the b6f complex is similar to that of the bc(1) complex, the domain arrangement outside the core and the complement of prosthetic groups are strikingly different. |
| >cd03532 Rieske_RO_Alpha_VanA_DdmC Rieske non-heme iron oxygenase (RO) family, Vanillate-O-demethylase oxygenase (VanA) and dicamba O-demethylase oxygenase (DdmC) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.4e-11 Score=117.94 Aligned_cols=79 Identities=27% Similarity=0.513 Sum_probs=67.2
Q ss_pred cCchhhhhhhhhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCCCC------CCCeEEEEEEcCC
Q psy2951 965 GMDPLAAQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMD------SLPCYKVTIQNDD 1038 (1466)
Q Consensus 965 g~~~~~~~~~~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~------~l~~~~v~~~~~~ 1038 (1466)
+....+.+..+|+++|+.+.|||.+++|..|.+.++.+.||||||+|+ .+|++...|... +|++|++++ .++
T Consensus 26 g~~i~l~r~~~g~~~a~~n~CpH~g~~L~~G~~~~~~i~Cp~Hg~~fd-~~G~~~~~p~~~~~~~~~~l~~~~v~~-~~g 103 (116)
T cd03532 26 GEPVVLYRTQDGRVAALEDRCPHRSAPLSKGSVEGGGLVCGYHGLEFD-SDGRCVHMPGQERVPAKACVRSYPVVE-RDA 103 (116)
T ss_pred CceEEEEECCCCCEEEeCCcCCCCCCCccCCcccCCEEEeCCCCcEEc-CCCCEEeCCCCCCCCCccccccCCEEE-ECC
Confidence 333334445678999999999999999999999999999999999999 799999887654 699999998 788
Q ss_pred EEEEEcc
Q psy2951 1039 SVVVQAR 1045 (1466)
Q Consensus 1039 ~~~~~~~ 1045 (1466)
.+++...
T Consensus 104 ~v~v~~~ 110 (116)
T cd03532 104 LIWIWMG 110 (116)
T ss_pred EEEEEcC
Confidence 8888754
|
The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Vanillate-O-demethylase is a heterodimeric enzyme consisting of a terminal oxygenase (VanA) and reductase (VanB) components. This enzyme reductively catalyzes the conversion of vanillate into protocatechuate and formaldehyde. Protocatechuate and vanillate are important intermediate metabolites in the degrad |
| >TIGR02378 nirD_assim_sml nitrite reductase [NAD(P)H], small subunit | Back alignment and domain information |
|---|
Probab=99.18 E-value=2e-11 Score=115.10 Aligned_cols=72 Identities=26% Similarity=0.499 Sum_probs=61.9
Q ss_pred hhhhhhhhhhhhcCCCCCC-CccccceeecCCE----EEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEEE
Q psy2951 970 AAQFAERNIYAVGTKCSHY-GAPLVKGSLGDGR----VRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQ 1043 (1466)
Q Consensus 970 ~~~~~~g~~~a~~~~C~h~-g~~l~~g~~~~~~----~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~~ 1043 (1466)
+++..+++++|+.+.|||. +.+|..|.+.++. +.||||+|+|+++||++...|.. +|++|++++ +++.+++.
T Consensus 28 v~r~~~~~~~a~~~~CpH~g~~~L~~g~~~~~~~~~~i~Cp~Hg~~Fdl~tG~~~~~~~~-~L~~y~v~v-~~g~v~v~ 104 (105)
T TIGR02378 28 IFRVPGDQVFAIQNMCPHKRAFVLSRGIVGDAQGELWVACPLHKRNFRLEDGRCLEDDSG-SVRTYEVRV-EDGRVYVA 104 (105)
T ss_pred EEEeCCCcEEEEeCcCCCCCCccccceEEccCCCcEEEECCcCCCEEEcCCccccCCCCc-cEeeEeEEE-ECCEEEEe
Confidence 3444467899999999999 8889999888766 99999999999999999987764 799999999 67788774
|
This model describes NirD, the small subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirB, the large subunit (TIGR02374). In a few bacteria such as Klebsiella pneumoniae and in Fungi, the two regions are fused. |
| >cd03536 Rieske_RO_Alpha_DTDO This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit (DitA) of diterpenoid dioxygenase (DTDO) | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.4e-11 Score=113.97 Aligned_cols=81 Identities=21% Similarity=0.231 Sum_probs=62.5
Q ss_pred CCCCCEEEEEeeCCeEEEEeCCCCCCCcccCCceecC-CEEEccCCCceEECCCCeeecCCCC-------------CCCC
Q psy2951 492 ASSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGD-GRVRCPWHGACFNIATGDIEDFPGM-------------DSLP 557 (1466)
Q Consensus 492 ~~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~~-~~~~Cp~H~~~f~~~~G~~~~~p~~-------------~~l~ 557 (1466)
.++..++++++.+|+++|++|.|||++++|+++...+ ..++||||||+|+. +|++...|.. .+|+
T Consensus 21 ~~~~~i~v~r~~~g~v~A~~n~CpH~g~~L~~~~~~~~~~i~Cp~Hgw~fd~-~G~~~~~p~~~~~~~~~~~~~~~~~L~ 99 (123)
T cd03536 21 MGSDSVIVARDKDGEIHVSLNVCPHRGMRISTTDGGNTQIHVCIYHGWAFRP-NGDFIGAPVEKECMHGKMRTKAELGLH 99 (123)
T ss_pred ECCceEEEEECCCCCEEEEeeeCCCCCCCcccccCCCcCEEECCcCCCEECC-CCcEEECCccccccccCCCCHHHCCCc
Confidence 3434444555569999999999999999999877653 47999999999996 6988877642 4588
Q ss_pred eEEEEEEcCeEEEEEc
Q psy2951 558 CYKVTIQNDDSVVVQA 573 (1466)
Q Consensus 558 ~~~v~i~~~~~~~~~~ 573 (1466)
.|++.+.++-+|+...
T Consensus 100 ~~~v~~~~g~Ifv~~~ 115 (123)
T cd03536 100 KARVTLYGGLIFATWN 115 (123)
T ss_pred ceeEEEECCEEEEEeC
Confidence 9999887777766443
|
DTDO is a novel aromatic-ring-hydroxylating dioxygenase found in Pseudomonas and other proteobacteria that degrades dehydroabietic acid (DhA). Specifically, DitA hydroxylates 7-oxodehydroabietic acid to 7-oxo-11,12-dihydroxy-8, 13-abietadien acid. The ditA1 and ditA2 genes encode the alpha and beta subunits of the oxygenase component of DTDO while the ditA3 gene encodes the ferredoxin component of DTDO. The organization of the genes encoding the various diterpenoid dioxygenase components, the phylogenetic distinctiveness of both the alpha subunit and the ferredoxin component, and the unusual iron-sulfur cluster of the ferredoxin all suggest that this enzyme belongs to a new class of aromatic ring-hydroxylating dioxygenases. |
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.6e-10 Score=102.93 Aligned_cols=80 Identities=29% Similarity=0.471 Sum_probs=74.1
Q ss_pred cEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEEC
Q psy2951 736 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANL 815 (1466)
Q Consensus 736 ~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~ 815 (1466)
+++|||||++|+|+|..|+++|++||++++.+.++ +.+++++.+.+.+.|+++||++++++.+++++.++++ +. |.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~-~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~-V~~ 77 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL-PGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VE-VTL 77 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS-TTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EE-EEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh-hhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EE-EEE
Confidence 68999999999999999999999999999999988 8899999999999999999999999999999976665 65 888
Q ss_pred CCC
Q psy2951 816 DNG 818 (1466)
Q Consensus 816 ~~g 818 (1466)
+||
T Consensus 78 ~~g 80 (80)
T PF00070_consen 78 EDG 80 (80)
T ss_dssp ETS
T ss_pred ecC
Confidence 775
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >cd03535 Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase (RO) family, Nathphalene 1,2-dioxygenase (NDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.1e-11 Score=114.09 Aligned_cols=59 Identities=24% Similarity=0.583 Sum_probs=50.5
Q ss_pred CCCCEEEEEeeCCeEEEEeCCCCCCCcccCCceecC-CEEEccCCCceEECCCCeeecCCC
Q psy2951 493 SSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGD-GRVRCPWHGACFNIATGDIEDFPG 552 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~~-~~~~Cp~H~~~f~~~~G~~~~~p~ 552 (1466)
++..++++++.+|+++|++|.|||+|++|..|...+ ..+.||||+|+|+ .+|++...|.
T Consensus 24 ~~~~iiv~r~~~g~~~A~~n~CpHrg~~L~~g~~~~~~~i~Cp~Hgw~Fd-~tG~~~~~p~ 83 (123)
T cd03535 24 GDDSFIVCRDEDGEIRAMFNSCRHRGMQVCRAEMGNTSHFRCPYHGWTYR-NTGRLVGVPA 83 (123)
T ss_pred CCeEEEEEECCCCCEEEEcccCccCCCEeeccccCCCCEEECCcCCCEEC-CCcCEeeCCC
Confidence 445566666679999999999999999999988775 6899999999999 7999998765
|
The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. NDO is a three-component RO system consisting of a reductase, a ferredoxin, and a hetero-hexameric alpha-beta subunit oxygenase component. NDO catalyzes the oxidation of naphthalene to cis-(1R,2S)-dihydroxy-1,2-dihydronaphthalene (naphthalene cis-dihydrodiol) with the consumption of O2 and NAD(P)H. NDO has a relaxed substrate specificity and can oxidize almost 1 |
| >cd03541 Rieske_RO_Alpha_CMO Rieske non-heme iron oxygenase (RO) family, Choline monooxygenase (CMO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth | Back alignment and domain information |
|---|
Probab=99.17 E-value=1e-10 Score=111.02 Aligned_cols=77 Identities=18% Similarity=0.300 Sum_probs=61.1
Q ss_pred CCCCEEEEEeeCCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCCC----------CCCeEEEE
Q psy2951 493 SSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMD----------SLPCYKVT 562 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~----------~l~~~~v~ 562 (1466)
++..++++++.+|+++|++|.|||++++|+.|..+++.++||||||+|+. +|++...|... .|..+++.
T Consensus 23 ~g~~i~v~r~~dg~v~A~~n~C~Hrg~~L~~g~~~~~~i~CP~Hgw~f~l-~G~l~~~P~~~~~~~~~~~~~~L~~~~~~ 101 (118)
T cd03541 23 GNVEYVVCRDGNGKLHAFHNVCTHRASILACGSGKKSCFVCPYHGWVYGL-DGSLTKATQATGIQNFNPKELGLVPLKVA 101 (118)
T ss_pred CCeEEEEEECCCCCEEEEeCCCCCCcCCccCCccccCEEEeCCCCCEEcC-CCeEEeCCCcccccCCCHHHCCCceEeEE
Confidence 44566666667899999999999999999999999889999999999999 59999887643 35566665
Q ss_pred EEcCeEEE
Q psy2951 563 IQNDDSVV 570 (1466)
Q Consensus 563 i~~~~~~~ 570 (1466)
+..+-+|+
T Consensus 102 ~~~g~vfv 109 (118)
T cd03541 102 EWGPFVLI 109 (118)
T ss_pred EECCEEEE
Confidence 54444444
|
The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. CMO is a novel RO found in certain plants which catalyzes the first step in betaine synthesis. CMO is not found in animals or bacteria. In these organisms, the first step in betaine synthesis is catalyzed by either the membrane-bound choline dehydrogenase (CDH) or the soluble choline oxidase (COX). |
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.2e-10 Score=102.05 Aligned_cols=80 Identities=29% Similarity=0.471 Sum_probs=73.9
Q ss_pred cEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCCeEEEEc
Q psy2951 184 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANL 263 (1466)
Q Consensus 184 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~ 263 (1466)
+++|||||++|+|+|..|+++|.+||++++.+.++ +.+++++.+.+.+.+++.||++++++.+++++.++++ +. |.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~-~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~-V~~ 77 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL-PGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VE-VTL 77 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS-TTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EE-EEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh-hhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EE-EEE
Confidence 58999999999999999999999999999999888 8899999999999999999999999999999987755 66 777
Q ss_pred CCC
Q psy2951 264 DNG 266 (1466)
Q Consensus 264 ~~g 266 (1466)
+||
T Consensus 78 ~~g 80 (80)
T PF00070_consen 78 EDG 80 (80)
T ss_dssp ETS
T ss_pred ecC
Confidence 765
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.1e-11 Score=112.48 Aligned_cols=68 Identities=35% Similarity=0.699 Sum_probs=59.3
Q ss_pred hhhhhhhhhhhhcCCCCCCCccccce--eecCCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcC
Q psy2951 970 AAQFAERNIYAVGTKCSHYGAPLVKG--SLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQND 1037 (1466)
Q Consensus 970 ~~~~~~g~~~a~~~~C~h~g~~l~~g--~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~ 1037 (1466)
+++..+|+++|+.+.|||.+++|..| ...++.+.||||||.|++.||++...|+..+|+.|+++++.|
T Consensus 28 ~~~~~~g~~~A~~~~CpH~g~~l~~~~~~~~~~~i~Cp~Hg~~Fd~~tG~~~~~p~~~~l~~~~v~ve~~ 97 (97)
T PF00355_consen 28 LVRRSDGEIYAFSNRCPHQGCPLSEGPFSEDGGVIVCPCHGWRFDLDTGECVGGPAPRPLPLYPVKVEGD 97 (97)
T ss_dssp EEEETTTEEEEEESB-TTTSBBGGCSSEETTTTEEEETTTTEEEETTTSBEEESTTCSBSTEEEEEEETT
T ss_pred EEEeCCCCEEEEEccCCccceeEcceecccccCEEEeCCcCCEEeCCCceEecCCCCCCcCCCCeEEeCC
Confidence 34446889999999999999999999 455689999999999999999999999999999999999543
|
Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B .... |
| >cd03545 Rieske_RO_Alpha_OHBDO_like Rieske non-heme iron oxygenase (RO) family, Ortho-halobenzoate-1,2-dioxygenase (OHBDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of OHBDO, salicylate 5-hydroxylase (S5H), terephthalate 1,2-dioxygenase system (TERDOS) and similar proteins | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.5e-10 Score=115.55 Aligned_cols=80 Identities=19% Similarity=0.382 Sum_probs=63.2
Q ss_pred CCCCEEEEEeeCCeEEEEeCCCCCCCcccCCcee-cCCEEEccCCCceEECCCCeeecCCCC-----------------C
Q psy2951 493 SSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSL-GDGRVRCPWHGACFNIATGDIEDFPGM-----------------D 554 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~-~~~~~~Cp~H~~~f~~~~G~~~~~p~~-----------------~ 554 (1466)
++..++++++.+|+++|++|.|||++++|+.|.. .++.++||||+|+|+++ |++...|.. .
T Consensus 47 ~g~~iiv~r~~~g~v~A~~n~CpHrg~~L~~g~~g~~~~i~CP~Hgw~Fdl~-G~~~~ip~~~~~~~~~~~~~~~~~~~~ 125 (150)
T cd03545 47 GDTPVVVTRAEDGSLHAWVNRCAHRGALVCRERRGNDGSLTCVYHQWAYDLK-GNLKGVPFRRGLKGQGGMPKDFDMKQH 125 (150)
T ss_pred CCceEEEEECCCCCEEEEcccCcCCCCEecccccCCCCEEECCCCCCEECCC-CCEEECccccccccccccccCcCHHHC
Confidence 4344555555689999999999999999998753 46799999999999996 999987642 3
Q ss_pred CCCeEEEEEEcCeEEEEEc
Q psy2951 555 SLPCYKVTIQNDDSVVVQA 573 (1466)
Q Consensus 555 ~l~~~~v~i~~~~~~~~~~ 573 (1466)
+|+.+++.+..+-+|+...
T Consensus 126 ~L~~~~v~~~~g~ifv~l~ 144 (150)
T cd03545 126 GLEKLRVETVGGLVFASFS 144 (150)
T ss_pred CCcceeEeEECCEEEEEeC
Confidence 5889999887777766543
|
ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OHBDO converts 2-chlorobenzoate (2-CBA) to catechol as well as 2,4-dCBA and 2,5-dCBA to 4-chlorocatechol, as part of the chlorobenzoate degradation pathway. Although ortho-substituted chlorobe |
| >cd03472 Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO) | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.3e-10 Score=112.47 Aligned_cols=77 Identities=16% Similarity=0.330 Sum_probs=58.4
Q ss_pred CCCCCEEEEEeeCCeEEEEeCCCCCCCcccCCceec-CCEEEccCCCceEECCCCeeecCCCCC------------CCCe
Q psy2951 492 ASSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLG-DGRVRCPWHGACFNIATGDIEDFPGMD------------SLPC 558 (1466)
Q Consensus 492 ~~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~-~~~~~Cp~H~~~f~~~~G~~~~~p~~~------------~l~~ 558 (1466)
.++..++++++.+|+++|++|.|||++++|++|... +..++||||||+|+. +|+|...|... .|+.
T Consensus 29 ~~~~~i~l~r~~~g~i~A~~n~C~Hrg~~L~~g~~g~~~~i~CP~Hgw~fd~-~G~~~~~P~~~~~~~~~~~~~~~~l~~ 107 (128)
T cd03472 29 MGEDPVIVVRQKDGSIRVFLNQCRHRGMRICRSDAGNAKAFTCTYHGWAYDT-AGNLVNVPFEKEAFCDGLDKADWGPLQ 107 (128)
T ss_pred ECCceEEEEECCCCCEEEEhhhCcCCCCeeeccCCCCcCEEECCcCCeEECC-CcCEEeccCcccccccCCCHHHCCCcc
Confidence 344445555557999999999999999999988753 358999999999995 69999888743 2566
Q ss_pred EEEEEEcCeEE
Q psy2951 559 YKVTIQNDDSV 569 (1466)
Q Consensus 559 ~~v~i~~~~~~ 569 (1466)
..+.+..+-+|
T Consensus 108 ~~v~~~~g~vf 118 (128)
T cd03472 108 ARVETYKGLIF 118 (128)
T ss_pred eeEeEECCEEE
Confidence 66665444343
|
ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. BPDO degrades biphenyls and polychlorinated biphenyls (PCB's) while CumDO degrades cumene (isopropylbenzene), an aromatic hydrocarbon that is i |
| >cd03476 Rieske_ArOX_small Small subunit of Arsenite oxidase (ArOX) family, Rieske domain; ArOX is a molybdenum/iron protein involved in the detoxification of arsenic, oxidizing it to arsenate | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.7e-11 Score=113.15 Aligned_cols=68 Identities=22% Similarity=0.425 Sum_probs=60.5
Q ss_pred hhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecC-CCccccCCCCCCCCeEEEEEEc-CCEEEEE
Q psy2951 975 ERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIA-TGDIEDFPGMDSLPCYKVTIQN-DDSVVVQ 1043 (1466)
Q Consensus 975 ~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~-~g~~~~~p~~~~l~~~~v~~~~-~~~~~~~ 1043 (1466)
+++++|+++.|||.+++|.++. +++.+.||||+|+||++ +|.++..|+..+|+.|++++++ ++.+++.
T Consensus 45 ~g~~~A~~~~CpH~g~~L~~g~-~~~~v~CP~Hg~~Fdl~tgG~~~~gPa~~~L~~ypv~ve~~~g~V~~~ 114 (126)
T cd03476 45 DNDIVAFSALCTHMGCPLTYDP-SNKTFVCPCHFSQFDPARGGQMVSGQATQNLPQIVLEYDEASGDIYAV 114 (126)
T ss_pred CCEEEEEeCcCCCCCccccccc-cCCEEEccCcCCEEeCCCCCeEEcCCCCCCCCeEEEEEECCCCEEEEE
Confidence 5789999999999999999877 78999999999999997 6799988999999999999953 7777663
|
It consists of two subunits, a large subunit similar to members of the DMSO reductase family of molybdenum enzymes and a small subunit with a Rieske-type [2Fe-2S] cluster. The large subunit of ArOX contains the molybdenum site at which the oxidation of arsenite occurs. The small subunit contains a domain homologous to the Rieske domains of the cytochrome bc(1) and cytochrome b6f complexes as well as naphthalene 1,2-dioxygenase. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. |
| >cd03537 Rieske_RO_Alpha_PrnD This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit of aminopyrrolnitrin oxygenase (PrnD) | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.2e-11 Score=113.05 Aligned_cols=84 Identities=25% Similarity=0.383 Sum_probs=69.3
Q ss_pred EEEeecCchhhhhhhhhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCCC-------------CC
Q psy2951 960 AILTVGMDPLAAQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGM-------------DS 1026 (1466)
Q Consensus 960 g~~~~g~~~~~~~~~~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~-------------~~ 1026 (1466)
.+.+.|.+.++.+..+|+++|+.+.|||.+++|..|.+.++.+.||+|||+|| .+|++...|.. ..
T Consensus 19 ~~~~~g~~ivl~r~~~g~v~a~~n~CpHrg~~Ls~G~v~~~~l~CpyHGw~Fd-~~G~~~~iP~~~~~~~~~~~~p~~~~ 97 (123)
T cd03537 19 ELTLFGRPCVAWRGATGRAVVMDRHCSHLGANLADGRVKDGCIQCPFHHWRYD-EQGQCVHIPGHSTAVRRLEPVPRGAR 97 (123)
T ss_pred EEEECCeEEEEEEccCCEEEEEcCCCCCCCCCccCCEEeCCEEECCCCCCEEC-CCCCEEECCCCcccccccccCCcccc
Confidence 33445555555666678999999999999999999999999999999999999 99998866531 34
Q ss_pred CCeEEEEEEcCCEEEEEcc
Q psy2951 1027 LPCYKVTIQNDDSVVVQAR 1045 (1466)
Q Consensus 1027 l~~~~v~~~~~~~~~~~~~ 1045 (1466)
++.|++++ .+|.+++...
T Consensus 98 ~~~~pv~e-~~G~Vwv~~g 115 (123)
T cd03537 98 QPTLVTAE-RYGYVWVWYG 115 (123)
T ss_pred cccEeEEE-ECCEEEEEcC
Confidence 88999998 8888888754
|
PrnD is a novel Rieske N-oxygenase that catalyzes the final step in the pyrrolnitrin biosynthetic pathway, the oxidation of the amino group in aminopyrrolnitrin to a nitro group, forming the antibiotic pyrrolnitrin. The biosynthesis of pyrrolnitrin is one of the best examples of enzyme-catalyzed arylamine oxidation. Although arylamine oxygenases are widely distributed within the microbial world and used in a variety of metabolic reactions, PrnD represents one of only two known examples of arylamine oxygenases or N-oxygenases involved in arylnitro group formation, the other being AurF involved in aureothin biosynthesis. |
| >cd03539 Rieske_RO_Alpha_S5H This alignment model represents the N-terminal rieske iron-sulfur domain of the oxygenase alpha subunit (NagG) of salicylate 5-hydroxylase (S5H) | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.1e-10 Score=111.35 Aligned_cols=79 Identities=19% Similarity=0.363 Sum_probs=61.1
Q ss_pred CCCCEEEEEeeCCeEEEEeCCCCCCCcccCCceec-CCEEEccCCCceEECCCCeeecCCCC------------------
Q psy2951 493 SSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLG-DGRVRCPWHGACFNIATGDIEDFPGM------------------ 553 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~-~~~~~Cp~H~~~f~~~~G~~~~~p~~------------------ 553 (1466)
++..++++++.+|+++|++|.|||++.+|+.|... .+.++||||||+|+.+ |++...|..
T Consensus 22 ~~~~v~v~r~~dg~v~A~~n~C~Hrg~~L~~g~~~~~~~l~CPyHgw~fdl~-G~l~~~p~~~~~~~~~~~~~~~~~~~~ 100 (129)
T cd03539 22 GERSVIMTRDPDGGINVVENVCAHRGMRFCRERNGNAKDFVCPYHQWNYSLK-GDLQGVPFRRGVKKDGKVNGGMPKDFK 100 (129)
T ss_pred CCcEEEEEECCCCCEEEEeccCcCCCCEeeeeccCccCEEECCCCCCEECCC-CCEeeccccccccccccccccccCCcC
Confidence 33444444557899999999999999999988654 4589999999999997 999887642
Q ss_pred ---CCCCeEEEEEEcCeEEEEE
Q psy2951 554 ---DSLPCYKVTIQNDDSVVVQ 572 (1466)
Q Consensus 554 ---~~l~~~~v~i~~~~~~~~~ 572 (1466)
..|+.+++.+..+-+|++.
T Consensus 101 ~~~~~L~~~~v~~~~g~Ifv~~ 122 (129)
T cd03539 101 TKDHGLTKLKVATRGGVVFASF 122 (129)
T ss_pred hHHCCCceeeEeEECCEEEEEe
Confidence 2477888887666666544
|
S5H converts salicylate (2-hydroxybenzoate), a metabolic intermediate of phenanthrene, to gentisate (2,5-dihydroxybenzoate) as part of an alternate pathway for naphthalene catabolism. S5H is a multicomponent enzyme made up of NagGH (the oxygenase components), NagAa (the ferredoxin reductase component), and NagAb (the ferredoxin component). The oxygenase component is made up of alpha (NagG) and beta (NagH) subunits. |
| >cd03469 Rieske_RO_Alpha_N Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.9e-11 Score=115.19 Aligned_cols=78 Identities=23% Similarity=0.419 Sum_probs=66.1
Q ss_pred CchhhhhhhhhhhhhhcCCCCCCCccccceee-cCCEEEcCCCCceeecCCCccccCCCCC----------CCCeEEEEE
Q psy2951 966 MDPLAAQFAERNIYAVGTKCSHYGAPLVKGSL-GDGRVRCPWHGACFNIATGDIEDFPGMD----------SLPCYKVTI 1034 (1466)
Q Consensus 966 ~~~~~~~~~~g~~~a~~~~C~h~g~~l~~g~~-~~~~~~cp~h~~~f~~~~g~~~~~p~~~----------~l~~~~v~~ 1034 (1466)
....+.+..+|+++|+.+.|||.+++|..|.+ .++.+.||||||+|++. |+++..|+.. .|++|++++
T Consensus 24 ~~i~v~r~~~g~~~a~~n~CpH~g~~L~~g~~~~~~~i~Cp~Hg~~Fd~~-G~~~~~P~~~~~~~~~~~~~~L~~~~v~~ 102 (118)
T cd03469 24 EPLVLVRDRDGEVRAFHNVCPHRGARLCEGRGGNAGRLVCPYHGWTYDLD-GKLVGVPREEGFPGFDKEKLGLRTVPVEE 102 (118)
T ss_pred ccEEEEECCCCCEEEEEEeCCCCCCEeeeccCCCCCEEECCCCCCEECCC-CcEEeCCcccccCCCCHHHCCCeEEEEEE
Confidence 33334444588999999999999999999998 88999999999999988 9999888754 399999998
Q ss_pred EcCCEEEEEcc
Q psy2951 1035 QNDDSVVVQAR 1045 (1466)
Q Consensus 1035 ~~~~~~~~~~~ 1045 (1466)
.++.+++...
T Consensus 103 -~~g~v~v~~~ 112 (118)
T cd03469 103 -WGGLIFVNLD 112 (118)
T ss_pred -ECCEEEEEcC
Confidence 7788888654
|
These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The oxygenase component may contain alpha and beta subunits, with the beta subunit having a purely structural function. Some oxygenase components contain only an alpha subunit. The oxygenase alpha subunit has two domains, an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from the reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Reduced pyridine nucleotide is used as the i |
| >cd03480 Rieske_RO_Alpha_PaO Rieske non-heme iron oxygenase (RO) family, Pheophorbide a oxygenase (PaO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO) and ACD1 (accelerated cell death 1) | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.8e-11 Score=115.58 Aligned_cols=86 Identities=21% Similarity=0.411 Sum_probs=67.6
Q ss_pred EEEEEeecCchhhhhhh-hhhhhhhcCCCCCCCccccceeec-CCEEEcCCCCceeecCCCccccCCCC-----------
Q psy2951 958 VLAILTVGMDPLAAQFA-ERNIYAVGTKCSHYGAPLVKGSLG-DGRVRCPWHGACFNIATGDIEDFPGM----------- 1024 (1466)
Q Consensus 958 i~g~~~~g~~~~~~~~~-~g~~~a~~~~C~h~g~~l~~g~~~-~~~~~cp~h~~~f~~~~g~~~~~p~~----------- 1024 (1466)
...+.+.+....+++.. +|+++|+.+.|||.+++|..|.+. ++.+.||||||+|| .+|++...|..
T Consensus 32 ~~~~~~~g~~i~v~r~~~dG~~~A~~n~CpHrga~L~~G~~~~~~~i~CP~Hgw~Fd-~tG~~~~~P~~~~~g~~~~~~~ 110 (138)
T cd03480 32 PTPFTLLGRDLVIWWDRNSQQWRAFDDQCPHRLAPLSEGRIDEEGCLECPYHGWSFD-GSGSCQRIPQAAEGGKAHTSPR 110 (138)
T ss_pred cEEEEECCeeEEEEEECCCCEEEEEcCCCcCCcCccccceEcCCCEEEeCCCCCEEC-CCCCEEECCCCccccccCCCcc
Confidence 33334444444445543 889999999999999999999885 57999999999999 79999987643
Q ss_pred CCCCeEEEEEEcCCEEEEEcc
Q psy2951 1025 DSLPCYKVTIQNDDSVVVQAR 1045 (1466)
Q Consensus 1025 ~~l~~~~v~~~~~~~~~~~~~ 1045 (1466)
..|++|++++ .++.+++...
T Consensus 111 ~~l~~ypv~v-~~g~V~V~~~ 130 (138)
T cd03480 111 ACVASLPTAV-RQGLLFVWPG 130 (138)
T ss_pred cccceEeEEE-ECCEEEEecC
Confidence 4589999998 7888888654
|
ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PaO expression increases upon physical wounding of plant leaves and is thought to catalyze a key step in chlorophyll degradation. The |
| >COG2081 Predicted flavoproteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.6e-09 Score=118.59 Aligned_cols=108 Identities=21% Similarity=0.316 Sum_probs=77.6
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCC-------CCCCcc--------------------chhc---
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP-------YDRVKL--------------------SKQL--- 643 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~-------~~~~~~--------------------~~~~--- 643 (1466)
..++|+|||||||||.||..++++|++ |+++|+.+.++ ..++.+ ...+
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~--V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~f 79 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRR--VLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARF 79 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCE--EEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhC
Confidence 368999999999999999999999998 77777764221 000000 0000
Q ss_pred ---------------------c------cCcccccccCHhHhhhCCcEEEEceEEEEecccc--ccEEEccCCCEEecCE
Q psy2951 644 ---------------------D------IKADSILLRTEEFYKDNDIHVIKGKKIISDSELN--EKKIKLQDGTSIDFTK 694 (1466)
Q Consensus 644 ---------------------~------~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~--~~~v~~~~~~~~~~d~ 694 (1466)
+ .....+++.+...+++.||+++++++|.++ +.. ...+.+.++.++.+|.
T Consensus 80 t~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v-~~~~~~f~l~t~~g~~i~~d~ 158 (408)
T COG2081 80 TPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSV-EKDDSGFRLDTSSGETVKCDS 158 (408)
T ss_pred CHHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeE-EecCceEEEEcCCCCEEEccE
Confidence 0 122334445556678899999999999999 544 5778888888999999
Q ss_pred EEEcCC--CCCC
Q psy2951 695 IYLATG--SSPR 704 (1466)
Q Consensus 695 lviAtG--~~~~ 704 (1466)
+||||| |.|.
T Consensus 159 lilAtGG~S~P~ 170 (408)
T COG2081 159 LILATGGKSWPK 170 (408)
T ss_pred EEEecCCcCCCC
Confidence 999999 5553
|
|
| >TIGR02694 arsenite_ox_S arsenite oxidase, small subunit | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-10 Score=111.38 Aligned_cols=68 Identities=21% Similarity=0.426 Sum_probs=60.5
Q ss_pred hhhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCC-CccccCCCCCCCCeEEEEEEcCCEEEE
Q psy2951 974 AERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIAT-GDIEDFPGMDSLPCYKVTIQNDDSVVV 1042 (1466)
Q Consensus 974 ~~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~-g~~~~~p~~~~l~~~~v~~~~~~~~~~ 1042 (1466)
.+|++||+++.|||.+++|.++. +++.+.||||+++|+++| |++...|+..+|++|++++++++.++.
T Consensus 47 ~~G~~~A~~~~CpH~g~~L~~~~-~~~~i~CP~Hga~Fdl~tgG~~~~gP~~~~L~~y~v~v~~~G~V~~ 115 (129)
T TIGR02694 47 PDGDIVAFSTLCTHMGCPVSYSA-DNKTFNCPCHFSVFDPEKGGQQVWGQATQNLPQIVLRVADNGDIFA 115 (129)
T ss_pred cCCEEEEEeCcCCCCCccccccc-CCCEEEcCCCCCEECCCCCCcEECCCCCCCCCeeEEEEECCCeEEE
Confidence 47899999999999999999875 679999999999999997 599988999999999999966666653
|
This model represents the small subunit of an arsenite oxidase complex. It is a Rieske protein and appears to rely on the Tat (twin-arginine translocation) system to cross the membrane. Although this enzyme could run in the direction of arsenate reduction to arsenite in principle, the relevant biological function is arsenite oxidation for energy metabolism, not arsenic resistance. Homologs to both large (TIGR02693) and small subunits that score in the gray zone between the set trusted and noise bit score cutoffs for the respective models are found in Aeropyrum pernix K1 and in Sulfolobus tokodaii str. 7. |
| >cd03473 Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophosphate-N-acetylneuraminic acid (CMP Neu5Ac) hydroxylase family, N-terminal Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer | Back alignment and domain information |
|---|
Probab=99.08 E-value=1e-10 Score=105.01 Aligned_cols=53 Identities=23% Similarity=0.382 Sum_probs=48.3
Q ss_pred hhhhhhhhcCCCCCCCccccc--eeecCCEEEcCCCCceeecCCCccccCCCCCC
Q psy2951 974 AERNIYAVGTKCSHYGAPLVK--GSLGDGRVRCPWHGACFNIATGDIEDFPGMDS 1026 (1466)
Q Consensus 974 ~~g~~~a~~~~C~h~g~~l~~--g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~~ 1026 (1466)
.+|++||+.+.|||.+.+|.. |.++++.+.||||+|.||++||++...|+..+
T Consensus 38 ~~G~~~A~~n~CpH~g~pL~~g~g~~~g~~V~CP~Hg~~FDLrTG~~~~~p~~~~ 92 (107)
T cd03473 38 SKSELKACKNQCKHQGGLFIKDIEDLDGRTVRCTKHNWKLDVSTMKYVNPPDSFC 92 (107)
T ss_pred ECCEEEEEcCCCCCCCccccCCcceEeCCEEEeCCCCCEEEcCCCCCccCCcccc
Confidence 478999999999999999999 56899999999999999999999998887654
|
CMP Neu5Ac hydroxylase is the key enzyme for the synthesis of N-glycolylneuraminic acid (NeuGc) from N-acetylneuraminic acid (Neu5Ac), NeuGc and Neu5Ac are members of a family of cell surface sugars called sialic acids. All mammals except humans have both NeuGc variants on their cell surfaces. In humans, the gene encoding CMP Neu5Ac hydroxylase has a mutation within its coding region that abolishes NeuGc production. |
| >cd03467 Rieske Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-10 Score=108.72 Aligned_cols=67 Identities=33% Similarity=0.717 Sum_probs=60.7
Q ss_pred hhhhhhhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEc
Q psy2951 970 AAQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQN 1036 (1466)
Q Consensus 970 ~~~~~~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~ 1036 (1466)
+.+..+++++|+.+.|||.+++|..+...+..+.||||+|.|++++|+++..|+..+|+.|++++..
T Consensus 27 v~~~~~~~~~a~~~~CpH~g~~l~~~~~~~~~i~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~~~~ 93 (98)
T cd03467 27 VVRREGGEVYALSNRCTHQGCPLSEGEGEDGCIVCPCHGSRFDLRTGEVVSGPAPRPLPKYPVKVEG 93 (98)
T ss_pred EEEeCCCEEEEEcCcCCCCCccCCcCccCCCEEEeCCCCCEEeCCCccCcCCCCCCCcCEEEEEEeC
Confidence 4444567999999999999999999988899999999999999999999999988899999999854
|
The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis. |
| >cd03479 Rieske_RO_Alpha_PhDO_like Rieske non-heme iron oxygenase (RO) family, Phthalate 4,5-dioxygenase (PhDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of PhDO and similar proteins including 3-chlorobenzoate 3,4-dioxygenase (CBDO), phenoxybenzoate dioxygenase (POB-dioxygenase) and 3-nitrobenzoate oxygenase (MnbA) | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.8e-10 Score=114.68 Aligned_cols=86 Identities=24% Similarity=0.406 Sum_probs=69.1
Q ss_pred EEEEEeecCchhhhhhhhhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCCCC---------CCC
Q psy2951 958 VLAILTVGMDPLAAQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMD---------SLP 1028 (1466)
Q Consensus 958 i~g~~~~g~~~~~~~~~~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~---------~l~ 1028 (1466)
...+.+.+....+.+..+|+++|+.+.|||.|++|..|.+.++.+.||||||+|+. +|++...|+.. .|+
T Consensus 37 ~~~~~~~g~~i~v~r~~~G~v~A~~n~CpHrG~~L~~G~~~~~~i~CP~Hgw~F~~-~G~~~~~P~~~~~~~~~~~~~l~ 115 (144)
T cd03479 37 PVRVRLLGEDLVAFRDTSGRVGLLDEHCPHRGASLVFGRVEECGLRCCYHGWKFDV-DGQCLEMPSEPPDSQLKQKVRQP 115 (144)
T ss_pred EEEEEECCcEEEEEEeCCCCEEEEcCcCCCCCCcccCCcccCCEEEccCCCcEECC-CCCEEECCCCccccCCccccCcc
Confidence 33333344444445556889999999999999999999999999999999999995 99999877543 489
Q ss_pred eEEEEEEcCCEEEEEcc
Q psy2951 1029 CYKVTIQNDDSVVVQAR 1045 (1466)
Q Consensus 1029 ~~~v~~~~~~~~~~~~~ 1045 (1466)
+|++++ .++.+++...
T Consensus 116 ~~~v~~-~~G~I~V~~~ 131 (144)
T cd03479 116 AYPVRE-RGGLVWAYMG 131 (144)
T ss_pred eEeEEE-ECCEEEEECC
Confidence 999998 8888888654
|
ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PhDO and CBDO are two-component RO systems, containing oxygenase and reductase components. PhDO catalyzes the dihydroxylation of phthalate to form th |
| >cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.3e-10 Score=112.82 Aligned_cols=82 Identities=24% Similarity=0.491 Sum_probs=64.8
Q ss_pred EeecCchhhhhhhhhhhhhhcCCCCCCCcccccee--ecCCEEEcCCCCceeecCCCccccC---CC-----CCCCCeEE
Q psy2951 962 LTVGMDPLAAQFAERNIYAVGTKCSHYGAPLVKGS--LGDGRVRCPWHGACFNIATGDIEDF---PG-----MDSLPCYK 1031 (1466)
Q Consensus 962 ~~~g~~~~~~~~~~g~~~a~~~~C~h~g~~l~~g~--~~~~~~~cp~h~~~f~~~~g~~~~~---p~-----~~~l~~~~ 1031 (1466)
.+.+...++.+ .+|+++|+.+.|||.+++|..|. ..++.+.||||||+|++++|++... |. ...|++|+
T Consensus 33 ~~~g~~i~l~r-~~g~v~A~~n~CpHrg~~L~~g~~~~~~~~i~Cp~Hgw~Fdl~tG~~~~~~~~p~~~~~~~~~L~~yp 111 (136)
T cd03548 33 QLCGEPILLRR-VDGKVYALKDRCLHRGVPLSKKPECFTKGTITCWYHGWTYRLDDGKLVTILANPDDPLIGRTGLKTYP 111 (136)
T ss_pred EECCcEEEEEe-cCCEEEEEeCcCcCCCCccccCcccccCCEEEecCCccEEeCCCccEEEcccCCCccccccCCCceEe
Confidence 33333333334 58899999999999999999885 5678999999999999999999853 22 34699999
Q ss_pred EEEEcCCEEEEEcc
Q psy2951 1032 VTIQNDDSVVVQAR 1045 (1466)
Q Consensus 1032 v~~~~~~~~~~~~~ 1045 (1466)
|++ .++.+++...
T Consensus 112 v~~-~~g~V~v~~~ 124 (136)
T cd03548 112 VEE-AKGMIFVFVG 124 (136)
T ss_pred EEE-ECCEEEEEeC
Confidence 998 7888888754
|
The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the |
| >PLN02518 pheophorbide a oxygenase | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.6e-10 Score=133.38 Aligned_cols=82 Identities=21% Similarity=0.366 Sum_probs=68.5
Q ss_pred CCCCEEEEEe-eCCeEEEEeCCCCCCCcccCCceec-CCEEEccCCCceEECCCCeeecCCCC--------------CCC
Q psy2951 493 SSTPKTLAQS-TTSNIYAVGTKCSHYGAPLVKGSLG-DGRVRCPWHGACFNIATGDIEDFPGM--------------DSL 556 (1466)
Q Consensus 493 ~~~~~~~~~~-~~g~~~a~~~~C~H~~~~l~~g~~~-~~~~~Cp~H~~~f~~~~G~~~~~p~~--------------~~l 556 (1466)
.|..++++++ .+|+++|++|.|||++++|+.|.++ ++.|+||||||+|+.+ |+|...|.. .|+
T Consensus 111 lG~~lVl~Rd~~~G~~~A~~d~CPHRgapLS~G~v~~~g~L~CpYHGW~Fd~~-G~c~~IP~~~~~~~~~~~~~~~~a~v 189 (539)
T PLN02518 111 LGRDLVLWKDPNQGEWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGC-GSCTRIPQAAPEGPEARAVKSPRACA 189 (539)
T ss_pred CCEEEEEEEECCCCeEEEEcccCcCcCCCcccceecCCCEEEcCCCCCEEcCC-CCeeecccccccccccccccCccccc
Confidence 3466777776 7899999999999999999999995 6799999999999996 999876642 257
Q ss_pred CeEEEEEEcCeEEEEEccc
Q psy2951 557 PCYKVTIQNDDSVVVQARK 575 (1466)
Q Consensus 557 ~~~~v~i~~~~~~~~~~~~ 575 (1466)
+.|++++.+|-+|+....+
T Consensus 190 ~sypv~e~~GlIwV~~~~~ 208 (539)
T PLN02518 190 IKFPTMVSQGLLFVWPDEN 208 (539)
T ss_pred ceEeEEEECCEEEEEeCCc
Confidence 8999999888888766543
|
|
| >cd03471 Rieske_cytochrome_b6f Iron-sulfur protein (ISP) component of the b6f complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.5e-10 Score=106.56 Aligned_cols=69 Identities=29% Similarity=0.597 Sum_probs=59.2
Q ss_pred hhhhhh--hhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEEEc
Q psy2951 973 FAERNI--YAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQA 1044 (1466)
Q Consensus 973 ~~~g~~--~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~~~ 1044 (1466)
..+|++ ||+++.|||.|++|..+.. ++.+.||||+++|+ .+|+++..|+..+|+.|++++ +++.+++..
T Consensus 41 ~~dg~i~~~A~~~~CpH~G~~l~~~~~-~~~i~CP~Hg~~Fd-~tG~~~~gPa~~~L~~y~V~v-edg~I~V~~ 111 (126)
T cd03471 41 EEDKTIANYGINAVCTHLGCVVPWNAA-ENKFKCPCHGSQYD-ATGKVVRGPAPLSLALVHATV-DDDKVVLSP 111 (126)
T ss_pred eCCCeEEEEEecCCCcCCCCCcCccCC-CCEEEcCCCCCEEC-CCCCEecCCCCCCCceEeEEE-ECCEEEEEE
Confidence 346655 8999999999999887643 57999999999999 999999999999999999999 667887753
|
The cytochrome b6f complex from Mastigocladus laminosus, a thermophilic cyanobacterium, contains four large subunits, including cytochrome f, cytochrome b6, the Rieske ISP, and subunit IV; as well as four small hydrophobic subunits, PetG, PetL, PetM, and PetN. Rieske ISP, one of the large subunits of the cytochrome bc-type complexes, is involved in respiratory and photosynthetic electron transfer. The core of the chloroplast b6f complex is similar to the analogous respiratory cytochrome bc(1) complex, but the domain arrangement outside the core and the complement of prosthetic groups are strikingly different. |
| >cd03542 Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenase (RO) family, 2-Halobenzoate 1,2-dioxygenase (HBDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.6e-10 Score=108.50 Aligned_cols=67 Identities=27% Similarity=0.522 Sum_probs=52.0
Q ss_pred CCCCEEEEEeeCCeEEEEeCCCCCCCcccCCceec-CCEEEccCCCceEECCCCeeecCCCCCCCCeEEE
Q psy2951 493 SSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLG-DGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKV 561 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~-~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v 561 (1466)
++..+++++..+|+++|++|.|||+|++|+.|... +..+.||||+|+|+ .+|++...|. .++..|++
T Consensus 22 ~~~~i~l~r~~~g~v~A~~n~C~Hrg~~L~~g~~~~~~~i~CP~Hg~~Fd-~~G~~~~~p~-~~~~~y~~ 89 (123)
T cd03542 22 GRQPVVITRDKDGELNAFINACSHRGAMLCRRKQGNKGTFTCPFHGWTFS-NTGKLLKVKD-PKTAGYPE 89 (123)
T ss_pred CCcEEEEEECCCCCEEEEcccCcCCCCccccccccCCCEEECcCCCCEec-CCccEEECCc-ccccCcCc
Confidence 33445555556899999999999999999988653 45899999999999 7899998774 23344444
|
The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. HBDO catalyzes the double hydroxylation of 2-halobenzoates with concomitant release of halogenide and carbon dioxide, yielding catechol. |
| >cd03477 Rieske_YhfW_C YhfW family, C-terminal Rieske domain; YhfW is a protein of unknown function with an N-terminal DadA-like (glycine/D-amino acid dehydrogenase) domain and a C-terminal Rieske domain | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.6e-10 Score=102.83 Aligned_cols=62 Identities=19% Similarity=0.350 Sum_probs=55.6
Q ss_pred hhhhhhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEE
Q psy2951 971 AQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTI 1034 (1466)
Q Consensus 971 ~~~~~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~ 1034 (1466)
++..+|+++|+.+.|||.+++|..|.. +..+.||||+|.|+ .+|+++..|+..+|+.|+++-
T Consensus 26 ~r~~~g~~~A~~~~CpH~g~~l~~g~~-~~~i~CP~Hg~~Fd-~~G~~~~~Pa~~~l~~y~v~~ 87 (91)
T cd03477 26 YRDEDGVLHTVSATCTHLGCIVHWNDA-EKSWDCPCHGSRFS-YDGEVIEGPAVSGLKPADDAP 87 (91)
T ss_pred EECCCCCEEEEcCcCCCCCCCCcccCC-CCEEECCCCCCEEC-CCCcEeeCCCCCCCCeeEeec
Confidence 334578999999999999999998764 57999999999999 899999999999999999975
|
The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. It is commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. YhfW is found in bacteria, some eukaryotes and archaea. |
| >cd03475 Rieske_SoxF_SoxL SoxF and SoxL family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.3e-09 Score=107.38 Aligned_cols=71 Identities=21% Similarity=0.321 Sum_probs=58.7
Q ss_pred CCeEEEEeCCCCCCCcccCC---------------ceecCCEEEccCCCceEECCCC-eeecCCCCCCCCeEEEEEEc--
Q psy2951 504 TSNIYAVGTKCSHYGAPLVK---------------GSLGDGRVRCPWHGACFNIATG-DIEDFPGMDSLPCYKVTIQN-- 565 (1466)
Q Consensus 504 ~g~~~a~~~~C~H~~~~l~~---------------g~~~~~~~~Cp~H~~~f~~~~G-~~~~~p~~~~l~~~~v~i~~-- 565 (1466)
+++++|+++.|||+||+|.+ |..+++.|.||||+|+||+++| .+..+|+..+|..+.++.++
T Consensus 74 ~g~IvA~S~iCpHlGc~l~~~~~y~~~~~~~~~~~g~~~~~~i~CPcHgS~FD~~tGg~v~~GPA~~pLp~~~L~~d~~~ 153 (171)
T cd03475 74 NKSIVAFSAICQHLGCQPPPIVSYPSYYPPDKAPGLASKGAVIHCCCHGSTYDPYKGGVVLTGPAPRPLPAVILEYDSST 153 (171)
T ss_pred CCEEEEEeCcCCCCCCcccccccccccccccccccccccCCEEEcCCCCCEEeCCCCCeEcCCCCCCCcCEeEEEEeCCC
Confidence 78999999999999998753 4455779999999999999877 57777999999999999874
Q ss_pred CeEEEEEcc
Q psy2951 566 DDSVVVQAR 574 (1466)
Q Consensus 566 ~~~~~~~~~ 574 (1466)
+.++.+..+
T Consensus 154 d~iyAvG~~ 162 (171)
T cd03475 154 DDLYAVGTL 162 (171)
T ss_pred CcEEEEecc
Confidence 556655443
|
SoxF is a subunit of the terminal oxidase supercomplex SoxM in the plasma membrane of Sulfolobus acidocaldarius that combines features of a cytochrome bc(1) complex and a cytochrome. The Rieske domain of SoxF has a 12 residue insertion which is not found in eukaryotic and bacterial Rieske proteins and is thought to influence the redox properties of the iron-sulfur cluster. SoxL is a Rieske protein which may be part of an archaeal bc-complex homologue whose physiological function is still unknown. SoxL has two features not seen in other Rieske proteins; (i) a significantly greater distance between the two cluster-binding sites and (ii) an unexpected Pro - Asp substitution at one of the cluster binding sites. SoxF and SoxL are found in archaea and in bacteria. |
| >COG4529 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.2e-08 Score=111.47 Aligned_cols=170 Identities=17% Similarity=0.209 Sum_probs=99.9
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCC-CcEEEEcCCCCC----CCCCCCCchh------------------h----ccC-
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFT-GKLYFITDENFL----PYDRVKLSKQ------------------L----DIK- 1117 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~-~~i~li~~~~~~----~~~~~~l~~~------------------~----~~~- 1117 (1466)
+++|+|||+|++|+.+|.+|.+.-.. ..|+|||+.+.+ +|....-... + ...
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~ 80 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQL 80 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhcc
Confidence 46899999999999999999876543 449999998653 3432210000 0 000
Q ss_pred ----------cccccccCh----h--------hhccCC---cEEEcCCeEEEeecC---CCCeEEecCCcEEecCeEEEe
Q psy2951 1118 ----------ADSILLRTE----E--------FYKDND---IHVIKGKKIISDSEL---NEKKIKLQDGTSIDFTKIYLA 1169 (1466)
Q Consensus 1118 ----------~~~~~~~~~----~--------~~~~~~---v~~~~~~~v~~i~d~---~~~~v~~~~g~~~~yd~lvlA 1169 (1466)
.+...+.+. + +.+... +.++... ++++... ....+...+|....+|-+|+|
T Consensus 81 ~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~-a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vla 159 (474)
T COG4529 81 QRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREE-ATSVRQDTNAGGYLVTTADGPSEIADIIVLA 159 (474)
T ss_pred cccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeee-eecceeccCCceEEEecCCCCeeeeeEEEEe
Confidence 000111111 0 111111 4444333 4444122 234577779999999999999
Q ss_pred cCCCCCcCCCCCCCC---cEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHHHhcCCC--eEEEEcCCC
Q psy2951 1170 TGSSPRTISQADGVN---KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVK--SVTVVGRGA 1238 (1466)
Q Consensus 1170 tG~~~~~~~~~~g~~---~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~~g~--~v~vv~~~~ 1238 (1466)
||..+-.++.- ..+ ..-+..+...+.. ...++...+|+|+|+|+...+....|+++|. +||+++|..
T Consensus 160 tgh~~~~~~~~-~~~~~~~~~~ia~~~~~~~-ld~v~~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG 231 (474)
T COG4529 160 TGHSAPPADPA-ARDLKGSPRLIADPYPANA-LDGVDADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG 231 (474)
T ss_pred ccCCCCCcchh-hhccCCCcceeccccCCcc-cccccCCCceEEecCCchhHHHHHHHhccCCccceEEEeccc
Confidence 99855443321 111 1112222223322 2334446679999999999999999999875 799998764
|
|
| >cd03538 Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygenase (RO) family, Anthranilate 1,2-dioxygenase (AntDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.4e-09 Score=106.47 Aligned_cols=60 Identities=22% Similarity=0.468 Sum_probs=48.0
Q ss_pred CCCCEEEEEeeCCeEEEEeCCCCCCCcccCCce-e-cCCEEEccCCCceEECCCCeeecCCCC
Q psy2951 493 SSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGS-L-GDGRVRCPWHGACFNIATGDIEDFPGM 553 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~-~-~~~~~~Cp~H~~~f~~~~G~~~~~p~~ 553 (1466)
++..++++++.+|+++|++|.|||+|++|..+. . ++..++||||||+|+. +|++...|..
T Consensus 44 ~g~~i~v~r~~~g~v~A~~n~CpHrg~~L~~~~~g~~~~~i~CP~Hgw~Fd~-~G~~~~~p~~ 105 (146)
T cd03538 44 GDQPVVMVRHTDGSVHVLYNRCPHKGTKIVSDGCGNTGKFFRCPYHAWSFKT-DGSLLAIPLK 105 (146)
T ss_pred CCeeEEEEECCCCCEEEEeccCcCCCCEeecccccccCCEEECCCCCCEECC-CCCEEECCch
Confidence 445555555578999999999999999996543 3 2558999999999997 8999988753
|
The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. AntDO converts anthranilate to catechol, a naturally occurring compound formed through tryptophan degradation and an important intermediate in the metabolism of many N-heterocyclic compounds such as indole, o-nitrobenzoate, carbazole, and quinaldine. |
| >PLN00095 chlorophyllide a oxygenase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.1e-09 Score=119.09 Aligned_cols=89 Identities=22% Similarity=0.396 Sum_probs=74.7
Q ss_pred CCeEEEEEeecCchhhhhhhhhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCCCCC------CC
Q psy2951 955 ADKVLAILTVGMDPLAAQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDS------LP 1028 (1466)
Q Consensus 955 ~~~i~g~~~~g~~~~~~~~~~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~~------l~ 1028 (1466)
.+....+.+.|...++++..+|+++|+.+.|||.+++|..|.+.++.+.||||||+||. +|+|...|.... ++
T Consensus 85 ~g~~~~f~L~GepIVL~Rd~dGqv~Af~N~CPHRGapLSeG~v~~g~L~CPYHGW~FD~-~G~C~~iP~~~~~~~~~~v~ 163 (394)
T PLN00095 85 EDALIAFDLFNVPWVLFRDADGEAGCIKDECAHRACPLSLGKLVDGKAQCPYHGWEYET-GGECAKMPSCKKFLKGVFAD 163 (394)
T ss_pred CCceEEEEECCEEEEEEECCCCCEEEEeccCCCCCCccccCcccCCEEEecCCCcEECC-CCCEeeCCCccccccccccc
Confidence 45556666667666667767899999999999999999999999999999999999995 999998886532 57
Q ss_pred eEEEEEEcCCEEEEEcc
Q psy2951 1029 CYKVTIQNDDSVVVQAR 1045 (1466)
Q Consensus 1029 ~~~v~~~~~~~~~~~~~ 1045 (1466)
.|++++ .+|.++++..
T Consensus 164 tYPV~e-~dGlVwVw~G 179 (394)
T PLN00095 164 AAPVIE-RDGFIFLWAG 179 (394)
T ss_pred eEEEEE-ECCEEEEEeC
Confidence 999998 7888888754
|
|
| >PLN02281 chlorophyllide a oxygenase | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.3e-09 Score=124.91 Aligned_cols=84 Identities=18% Similarity=0.385 Sum_probs=70.3
Q ss_pred EEEeecCchhhhhhhhhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCCCC----CCCeEEEEEE
Q psy2951 960 AILTVGMDPLAAQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMD----SLPCYKVTIQ 1035 (1466)
Q Consensus 960 g~~~~g~~~~~~~~~~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~----~l~~~~v~~~ 1035 (1466)
.+.+.|...++++..+|+++|+.+.|||.+++|..|.+.++.+.||||||+|+ .+|+|...|... .++.|++++
T Consensus 237 ~v~llG~~IVL~R~~dG~v~A~~D~CPHRgaPLs~G~v~g~~L~CPYHGW~FD-~dG~cv~iP~~~~~~~~l~sYPV~e- 314 (536)
T PLN02281 237 PIECFEQPWVIFRGEDGKPGCVRNTCAHRACPLDLGTVNEGRIQCPYHGWEYS-TDGECKKMPSTKLLKVKIKSLPCLE- 314 (536)
T ss_pred EEEECCEEEEEEECCCCeEEEEeCcCcCCCCccccceeeCCEEEeCCCCCEEC-CCCCEeeCCCCccccCCcceEeEEE-
Confidence 33444444445566688999999999999999999999999999999999999 899999988753 488999998
Q ss_pred cCCEEEEEcc
Q psy2951 1036 NDDSVVVQAR 1045 (1466)
Q Consensus 1036 ~~~~~~~~~~ 1045 (1466)
.++.+|++..
T Consensus 315 ~~GlVwV~lg 324 (536)
T PLN02281 315 QEGMIWIWPG 324 (536)
T ss_pred ECCEEEEEeC
Confidence 7888888754
|
|
| >TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.8e-07 Score=106.94 Aligned_cols=148 Identities=19% Similarity=0.142 Sum_probs=100.5
Q ss_pred HHHHHHhcC-CCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCC--CeeecC
Q psy2951 1219 EAAAFCASK-VKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG--TTIPAD 1295 (1466)
Q Consensus 1219 e~a~~l~~~-g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g--~~i~~D 1295 (1466)
++...|.+. |+.|.-+-..| +...+..+.+.|.+.++++|++++.+.+|.++. .+++++..|...++ .++.+|
T Consensus 237 ~~~~~L~~~~g~~v~E~ptlP---PSv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~-~~~~~v~~V~t~~g~~~~l~AD 312 (419)
T TIGR03378 237 ELLRELEQATGLTLCELPTMP---PSLLGIRLEEALKHRFEQLGGVMLPGDRVLRAE-FEGNRVTRIHTRNHRDIPLRAD 312 (419)
T ss_pred HHHHHHHHHHCCCEEeCCCCC---CCCcHHHHHHHHHHHHHHCCCEEEECcEEEEEE-eeCCeEEEEEecCCccceEECC
Confidence 444445443 66666654332 235678899999999999999999999999987 45566777776776 489999
Q ss_pred EEEEeeccccCcccccc--------CCceee-------------------CCCeEEeCCCccc-----cCCCEEEecccc
Q psy2951 1296 LVIVGIGTVLNTNYLDG--------KGVELN-------------------GQKAVVVNEYLET-----NVPGVYAGGDIA 1343 (1466)
Q Consensus 1296 ~vv~a~G~~p~~~~~~~--------~gl~~~-------------------~~G~i~vd~~~~t-----~~~~v~a~GD~a 1343 (1466)
.+|+|+|.--...|++. .+|.+. ..=+|.+|+++|. ..+|+||+|-+.
T Consensus 313 ~vVLAaGaw~S~gL~a~l~~i~Epif~L~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL 392 (419)
T TIGR03378 313 HFVLASGSFFSNGLVAEFDKIYEPIFGLDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVL 392 (419)
T ss_pred EEEEccCCCcCHHHHhhcCceeeeccCCCcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhh
Confidence 99999997733333222 222220 0114889999984 289999999988
Q ss_pred cCCCccCCCceeeeecHHHHHHHHHHHHHHhc
Q psy2951 1344 YAPLHSFYNKNASIGHYQLAQYHGRIAALNMV 1375 (1466)
Q Consensus 1344 ~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~ 1375 (1466)
...++...|- .--.|+..|-.||+.|+
T Consensus 393 ~G~d~~~~gc-----G~GVai~Ta~~aa~~i~ 419 (419)
T TIGR03378 393 GGYDPIFEGC-----GSGVAVSTALHAAEQII 419 (419)
T ss_pred cCCChHhcCC-----CchhHHHHHHHHHHhhC
Confidence 7665432110 01368888888888764
|
Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase. |
| >cd03470 Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) component of the bc(1) complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.2e-09 Score=99.74 Aligned_cols=68 Identities=22% Similarity=0.360 Sum_probs=60.0
Q ss_pred hhhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEE
Q psy2951 974 AERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVV 1042 (1466)
Q Consensus 974 ~~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~ 1042 (1466)
.+++++|+.+.|||.++.+..+...++.+.|||||+.||+ +|+....|+..+|+.|+++++.++.+++
T Consensus 58 ~~~~~~a~~~~CtH~gc~~~~~~~~~~~~~CPcHgs~Fdl-~G~~~~gPa~~~L~~~p~~~~~~~~l~i 125 (126)
T cd03470 58 GKPEWLVVIGICTHLGCVPTYRAGDYGGFFCPCHGSHYDA-SGRIRKGPAPLNLEVPPYKFLSDTTIVI 125 (126)
T ss_pred CCCcEEEEeCcCCCCCCeeccccCCCCEEEecCcCCEECC-CCeEecCCCCCCCCeeeEEEecCCEEEe
Confidence 3679999999999999988877667899999999999997 5999999999999999999967676654
|
The bc(1) complex is a multisubunit enzyme found in many different organisms including uni- and multi-cellular eukaryotes, plants (in their mitochondria) and bacteria. The cytochrome bc(1) and b6f complexes are central components of the respiratory and photosynthetic electron transport chains, respectively, which carry out similar core electron and proton transfer steps. The bc(1) and b6f complexes share a common core structure of three catalytic subunits: cyt b, the Rieske ISP, and either a cyt c1 in the bc(1) complex or cyt f in the b6f complex, which are arranged in an integral membrane-bound dimeric complex. While the core of the b6f complex is similar to that of the bc(1) complex, the domain arrangement outside the core and the complement of prosthetic groups are strikingly different. |
| >COG2081 Predicted flavoproteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.6e-08 Score=108.89 Aligned_cols=82 Identities=18% Similarity=0.231 Sum_probs=60.7
Q ss_pred HHHHHhhCCCEEEEEeecCccccc-ccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCCeEEEEcCCCcEEeccEEE
Q psy2951 197 AAAFCASKVKSVTVVGRGAVPFQE-SLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVI 275 (1466)
Q Consensus 197 ~A~~l~~~g~~Vtlv~~~~~~~~~-~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi 275 (1466)
+-..+.++|.+...-+. -+.|+. .-...+.+.+.+.+++.||+++++++|.+++.++ ....+.+.+|+++.||.+|
T Consensus 84 ~i~~~e~~Gi~~~e~~~-Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~--~~f~l~t~~g~~i~~d~li 160 (408)
T COG2081 84 FIDWVEGLGIALKEEDL-GRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD--SGFRLDTSSGETVKCDSLI 160 (408)
T ss_pred HHHHHHhcCCeeEEccC-ceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC--ceEEEEcCCCCEEEccEEE
Confidence 33445556654433322 234443 3347888999999999999999999999998864 3456888888899999999
Q ss_pred Eeeccc
Q psy2951 276 VGIGTV 281 (1466)
Q Consensus 276 ~a~G~~ 281 (1466)
+|+|-.
T Consensus 161 lAtGG~ 166 (408)
T COG2081 161 LATGGK 166 (408)
T ss_pred EecCCc
Confidence 999944
|
|
| >COG4638 HcaE Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.3e-09 Score=121.92 Aligned_cols=85 Identities=25% Similarity=0.524 Sum_probs=73.7
Q ss_pred cCCCCCEEEEEeeCCeEEEEeCCCCCCCcccCCceecC-CEEEccCCCceEECCCCeeecCC------CCC----CCCeE
Q psy2951 491 PASSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGD-GRVRCPWHGACFNIATGDIEDFP------GMD----SLPCY 559 (1466)
Q Consensus 491 ~~~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~~-~~~~Cp~H~~~f~~~~G~~~~~p------~~~----~l~~~ 559 (1466)
...++.++++++.+|+++|+.|.|||+|++|+.|.+.+ +.|+||||||+|+.+ |+|...| ... ++..+
T Consensus 46 ~i~g~~lvi~R~~dg~~~al~d~C~HRga~Ls~g~~~~~~~l~CpyHgW~y~~~-G~~~~ip~~~~~~~~~~~~~~l~~~ 124 (367)
T COG4638 46 RIGGEPLVVVRDKDGQVHALADVCPHRGARLSEGRVGGKGRLTCPYHGWTYDLD-GRLRGVPARGYPLDFDKSEHGLKRY 124 (367)
T ss_pred EEcCeEEEEEECCCCCEEEEeccCCCCCchhccccCCCCceEecCCCceEECCC-CcEecCCccccCCCCCHhhCCcccc
Confidence 34458888898999999999999999999999999998 899999999999997 9999887 222 57889
Q ss_pred EEEEEcCeEEEEEcccc
Q psy2951 560 KVTIQNDDSVVVQARKD 576 (1466)
Q Consensus 560 ~v~i~~~~~~~~~~~~~ 576 (1466)
++.+..|-+|++..++.
T Consensus 125 ~~~~~~G~Iwi~~~~~~ 141 (367)
T COG4638 125 PVEERYGFIWIWLGDPP 141 (367)
T ss_pred ceEEEccEEEEecCCCc
Confidence 99998888888776665
|
|
| >cd03535 Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase (RO) family, Nathphalene 1,2-dioxygenase (NDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth | Back alignment and domain information |
|---|
Probab=98.76 E-value=8e-09 Score=99.87 Aligned_cols=74 Identities=20% Similarity=0.398 Sum_probs=59.6
Q ss_pred hhhhhhhhhhhcCCCCCCCccccceeecC-CEEEcCCCCceeecCCCccccCCCCC------------CCCeEEEEEEcC
Q psy2951 971 AQFAERNIYAVGTKCSHYGAPLVKGSLGD-GRVRCPWHGACFNIATGDIEDFPGMD------------SLPCYKVTIQND 1037 (1466)
Q Consensus 971 ~~~~~g~~~a~~~~C~h~g~~l~~g~~~~-~~~~cp~h~~~f~~~~g~~~~~p~~~------------~l~~~~v~~~~~ 1037 (1466)
++..+|+++|+.+.|||.+++|..|...+ ..+.||||||+|+ .+|++...|... .|+.|++.....
T Consensus 31 ~r~~~g~~~A~~n~CpHrg~~L~~g~~~~~~~i~Cp~Hgw~Fd-~tG~~~~~p~~~~~~~~~~~~~~~~L~~~~~~e~~~ 109 (123)
T cd03535 31 CRDEDGEIRAMFNSCRHRGMQVCRAEMGNTSHFRCPYHGWTYR-NTGRLVGVPAQQEAYGGGFDKSQWGLRPAPNLDSYN 109 (123)
T ss_pred EECCCCCEEEEcccCccCCCEeeccccCCCCEEECCcCCCEEC-CCcCEeeCCCcccccccCcCHHHCCCccceeEEEEC
Confidence 33357899999999999999999988764 6899999999999 899999876422 378887544368
Q ss_pred CEEEEEcc
Q psy2951 1038 DSVVVQAR 1045 (1466)
Q Consensus 1038 ~~~~~~~~ 1045 (1466)
+.++++..
T Consensus 110 g~vfv~l~ 117 (123)
T cd03535 110 GLIFGSLD 117 (123)
T ss_pred CEEEEEeC
Confidence 88888654
|
The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. NDO is a three-component RO system consisting of a reductase, a ferredoxin, and a hetero-hexameric alpha-beta subunit oxygenase component. NDO catalyzes the oxidation of naphthalene to cis-(1R,2S)-dihydroxy-1,2-dihydronaphthalene (naphthalene cis-dihydrodiol) with the consumption of O2 and NAD(P)H. NDO has a relaxed substrate specificity and can oxidize almost 1 |
| >PRK13474 cytochrome b6-f complex iron-sulfur subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=9e-09 Score=105.30 Aligned_cols=68 Identities=31% Similarity=0.584 Sum_probs=59.5
Q ss_pred hhhhh--hhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEEEc
Q psy2951 974 AERNI--YAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQA 1044 (1466)
Q Consensus 974 ~~g~~--~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~~~ 1044 (1466)
.+|++ ||+++.|||.++++..+.. ++.+.|||||++|| .+|++...|+..+|+.|++++ +++.+++..
T Consensus 94 ~~g~~~~~a~~~~CtH~gc~l~~~~~-~~~~~CP~Hgs~Fd-~tG~~~~gPa~~~L~~y~v~v-~~g~v~v~~ 163 (178)
T PRK13474 94 EDGTIASYGINAVCTHLGCVVPWNSG-ENKFQCPCHGSQYD-ATGKVVRGPAPLSLALVHVTV-EDDKVLFSP 163 (178)
T ss_pred CCCEEEEEEecCCCCCCCCccccccC-CCEEEecCcCCEEC-CCCCCccCCCCCCCCeEeEEE-ECCEEEEEE
Confidence 46777 7889999999999988764 47999999999999 999999999999999999999 577777754
|
|
| >cd03541 Rieske_RO_Alpha_CMO Rieske non-heme iron oxygenase (RO) family, Choline monooxygenase (CMO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth | Back alignment and domain information |
|---|
Probab=98.76 E-value=1e-08 Score=97.48 Aligned_cols=74 Identities=20% Similarity=0.313 Sum_probs=60.2
Q ss_pred hhhhhhhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCCCCC----------CCeEEEEEEcCCE
Q psy2951 970 AAQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDS----------LPCYKVTIQNDDS 1039 (1466)
Q Consensus 970 ~~~~~~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~~----------l~~~~v~~~~~~~ 1039 (1466)
+.+..+|+++|+.+.|||.+++|..|...++.+.||||||+|++ +|++...|.... |..+.+.+ -.+.
T Consensus 29 v~r~~dg~v~A~~n~C~Hrg~~L~~g~~~~~~i~CP~Hgw~f~l-~G~l~~~P~~~~~~~~~~~~~~L~~~~~~~-~~g~ 106 (118)
T cd03541 29 VCRDGNGKLHAFHNVCTHRASILACGSGKKSCFVCPYHGWVYGL-DGSLTKATQATGIQNFNPKELGLVPLKVAE-WGPF 106 (118)
T ss_pred EEECCCCCEEEEeCCCCCCcCCccCCccccCEEEeCCCCCEEcC-CCeEEeCCCcccccCCCHHHCCCceEeEEE-ECCE
Confidence 34445789999999999999999999999999999999999996 899998776543 56666665 6777
Q ss_pred EEEEcc
Q psy2951 1040 VVVQAR 1045 (1466)
Q Consensus 1040 ~~~~~~ 1045 (1466)
++++..
T Consensus 107 vfv~~~ 112 (118)
T cd03541 107 VLISVD 112 (118)
T ss_pred EEEEeC
Confidence 777643
|
The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. CMO is a novel RO found in certain plants which catalyzes the first step in betaine synthesis. CMO is not found in animals or bacteria. In these organisms, the first step in betaine synthesis is catalyzed by either the membrane-bound choline dehydrogenase (CDH) or the soluble choline oxidase (COX). |
| >COG4529 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.74 E-value=8.1e-07 Score=101.91 Aligned_cols=170 Identities=16% Similarity=0.207 Sum_probs=98.0
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCC-ccEEEEcCCCCCC----CCCCccchhcc-------cC----cccccc------
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFT-GKLYFITDENFLP----YDRVKLSKQLD-------IK----ADSILL------ 652 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~-~~v~~~~~~~~~~----~~~~~~~~~~~-------~~----~~~~~~------ 652 (1466)
+++|+|||||++|+..|.+|.+.-.. ..|.++|+...++ |........+. .. ++++..
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~ 80 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQL 80 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhcc
Confidence 47999999999999999999986443 3388888875433 21111000000 00 000100
Q ss_pred ----------------------------cCHhHhhhCC---cEEEEceEEEEeccc---cccEEEccCCCEEecCEEEEc
Q psy2951 653 ----------------------------RTEEFYKDND---IHVIKGKKIISDSEL---NEKKIKLQDGTSIDFTKIYLA 698 (1466)
Q Consensus 653 ----------------------------~~~~~~~~~g---v~~~~~~~v~~i~~~---~~~~v~~~~~~~~~~d~lviA 698 (1466)
++..++++.. +.++... ++++... ....+...+|....+|-+|+|
T Consensus 81 ~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~-a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vla 159 (474)
T COG4529 81 QRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREE-ATSVRQDTNAGGYLVTTADGPSEIADIIVLA 159 (474)
T ss_pred cccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeee-eecceeccCCceEEEecCCCCeeeeeEEEEe
Confidence 0111122222 5555544 4444222 345677778889999999999
Q ss_pred CCCCCCcCCCCCCCC---cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccC--CeEEEEeecC
Q psy2951 699 TGSSPRTISQADGVN---KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKV--KSVTVVGRGA 767 (1466)
Q Consensus 699 tG~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g--~~V~lv~~~~ 767 (1466)
||..+..++.. ..+ ...+..+......+. .+....+|+|+|+|.+.++....|+++| .++|++.|+.
T Consensus 160 tgh~~~~~~~~-~~~~~~~~~~ia~~~~~~~ld-~v~~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG 231 (474)
T COG4529 160 TGHSAPPADPA-ARDLKGSPRLIADPYPANALD-GVDADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG 231 (474)
T ss_pred ccCCCCCcchh-hhccCCCcceeccccCCcccc-cccCCCceEEecCCchhHHHHHHHhccCCccceEEEeccc
Confidence 99654433321 111 111111222221122 2334667999999999999999999986 4689888875
|
|
| >TIGR01416 Rieske_proteo ubiquinol-cytochrome c reductase, iron-sulfur subunit | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.7e-08 Score=101.40 Aligned_cols=67 Identities=24% Similarity=0.421 Sum_probs=56.0
Q ss_pred eCCeEEEEeCCCCCCCcccCC-ceec-CCEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCeEEE
Q psy2951 503 TTSNIYAVGTKCSHYGAPLVK-GSLG-DGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVV 570 (1466)
Q Consensus 503 ~~g~~~a~~~~C~H~~~~l~~-g~~~-~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~~ 570 (1466)
.+++++|+++.|||+||.+.+ +... .+.+.|||||++||+. |++..+|+..+|..|+.++.++..+.
T Consensus 104 ~~~~~~a~~~~CtH~Gc~~~~~~~~~~~~~~~CPcHgs~Fd~~-G~~~~gpa~~~L~~~~~~~~~~~~~~ 172 (174)
T TIGR01416 104 GKPEWLVVIGICTHLGCIPTYGPEEGDKGGFFCPCHGSHYDTA-GRVRKGPAPLNLPVPPYKFLSDTTIL 172 (174)
T ss_pred cCCcEEEEEeccCCCCCccccccCCCCCCEEEeCCCCCEECCC-CcEecCCCCCCCCCCCEEEcCCCEEE
Confidence 368999999999999987754 3333 4589999999999996 99999999999999999987776543
|
Most members of this family have a recognizable twin-arginine translocation (tat) signal sequence (DeltaPh-dependent translocation in chloroplast) for transport across the membrane with the 2Fe-2S group already bound. These signal sequences include a motif resembling RRxFLK before the transmembrane helix. |
| >cd03545 Rieske_RO_Alpha_OHBDO_like Rieske non-heme iron oxygenase (RO) family, Ortho-halobenzoate-1,2-dioxygenase (OHBDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of OHBDO, salicylate 5-hydroxylase (S5H), terephthalate 1,2-dioxygenase system (TERDOS) and similar proteins | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.5e-08 Score=101.11 Aligned_cols=74 Identities=19% Similarity=0.383 Sum_probs=60.4
Q ss_pred hhhhhhhhhhhcCCCCCCCccccceee-cCCEEEcCCCCceeecCCCccccCCCC-----------------CCCCeEEE
Q psy2951 971 AQFAERNIYAVGTKCSHYGAPLVKGSL-GDGRVRCPWHGACFNIATGDIEDFPGM-----------------DSLPCYKV 1032 (1466)
Q Consensus 971 ~~~~~g~~~a~~~~C~h~g~~l~~g~~-~~~~~~cp~h~~~f~~~~g~~~~~p~~-----------------~~l~~~~v 1032 (1466)
.+..+|+++|+.+.|||.+++|..|.. .++.+.||||||+|++ +|++...|.. ..|+.|++
T Consensus 54 ~r~~~g~v~A~~n~CpHrg~~L~~g~~g~~~~i~CP~Hgw~Fdl-~G~~~~ip~~~~~~~~~~~~~~~~~~~~~L~~~~v 132 (150)
T cd03545 54 TRAEDGSLHAWVNRCAHRGALVCRERRGNDGSLTCVYHQWAYDL-KGNLKGVPFRRGLKGQGGMPKDFDMKQHGLEKLRV 132 (150)
T ss_pred EECCCCCEEEEcccCcCCCCEecccccCCCCEEECCCCCCEECC-CCCEEECccccccccccccccCcCHHHCCCcceeE
Confidence 344578999999999999999998754 4679999999999998 5999987642 24899999
Q ss_pred EEEcCCEEEEEcch
Q psy2951 1033 TIQNDDSVVVQARK 1046 (1466)
Q Consensus 1033 ~~~~~~~~~~~~~~ 1046 (1466)
.+ .++.++++...
T Consensus 133 ~~-~~g~ifv~l~~ 145 (150)
T cd03545 133 ET-VGGLVFASFSD 145 (150)
T ss_pred eE-ECCEEEEEeCC
Confidence 98 78889887543
|
ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OHBDO converts 2-chlorobenzoate (2-CBA) to catechol as well as 2,4-dCBA and 2,5-dCBA to 4-chlorocatechol, as part of the chlorobenzoate degradation pathway. Although ortho-substituted chlorobe |
| >cd03536 Rieske_RO_Alpha_DTDO This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit (DitA) of diterpenoid dioxygenase (DTDO) | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.7e-08 Score=97.56 Aligned_cols=74 Identities=22% Similarity=0.258 Sum_probs=60.4
Q ss_pred hhhhhhhhhhhcCCCCCCCccccceeecC-CEEEcCCCCceeecCCCccccCCCC-------------CCCCeEEEEEEc
Q psy2951 971 AQFAERNIYAVGTKCSHYGAPLVKGSLGD-GRVRCPWHGACFNIATGDIEDFPGM-------------DSLPCYKVTIQN 1036 (1466)
Q Consensus 971 ~~~~~g~~~a~~~~C~h~g~~l~~g~~~~-~~~~cp~h~~~f~~~~g~~~~~p~~-------------~~l~~~~v~~~~ 1036 (1466)
++..+|+++|+.+.|||.+++|..+...+ ..+.||||||+|+ .+|++...|.. ..|+.|+|++ .
T Consensus 29 ~r~~~g~v~A~~n~CpH~g~~L~~~~~~~~~~i~Cp~Hgw~fd-~~G~~~~~p~~~~~~~~~~~~~~~~~L~~~~v~~-~ 106 (123)
T cd03536 29 ARDKDGEIHVSLNVCPHRGMRISTTDGGNTQIHVCIYHGWAFR-PNGDFIGAPVEKECMHGKMRTKAELGLHKARVTL-Y 106 (123)
T ss_pred EECCCCCEEEEeeeCCCCCCCcccccCCCcCEEECCcCCCEEC-CCCcEEECCccccccccCCCCHHHCCCcceeEEE-E
Confidence 34457899999999999999999876643 5689999999999 79988876642 3489999998 8
Q ss_pred CCEEEEEcch
Q psy2951 1037 DDSVVVQARK 1046 (1466)
Q Consensus 1037 ~~~~~~~~~~ 1046 (1466)
++.++++...
T Consensus 107 ~g~Ifv~~~~ 116 (123)
T cd03536 107 GGLIFATWNI 116 (123)
T ss_pred CCEEEEEeCC
Confidence 8899887553
|
DTDO is a novel aromatic-ring-hydroxylating dioxygenase found in Pseudomonas and other proteobacteria that degrades dehydroabietic acid (DhA). Specifically, DitA hydroxylates 7-oxodehydroabietic acid to 7-oxo-11,12-dihydroxy-8, 13-abietadien acid. The ditA1 and ditA2 genes encode the alpha and beta subunits of the oxygenase component of DTDO while the ditA3 gene encodes the ferredoxin component of DTDO. The organization of the genes encoding the various diterpenoid dioxygenase components, the phylogenetic distinctiveness of both the alpha subunit and the ferredoxin component, and the unusual iron-sulfur cluster of the ferredoxin all suggest that this enzyme belongs to a new class of aromatic ring-hydroxylating dioxygenases. |
| >PRK09897 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.5e-07 Score=114.36 Aligned_cols=167 Identities=17% Similarity=0.217 Sum_probs=101.1
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCC----CCCCC--------------------CchhhccC----
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP----YDRVK--------------------LSKQLDIK---- 1117 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~----~~~~~--------------------l~~~~~~~---- 1117 (1466)
|++|+|||||++|+++|.+|.+.+...+|+|||+.+.++ |.... +..+....
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~ 80 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSH 80 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHH
Confidence 468999999999999999998876556999999975432 33210 00111000
Q ss_pred ------------cccccccC------h-------hhhccCC--cEEEcCCeEEEeecCCCC--eEEecC-CcEEecCeEE
Q psy2951 1118 ------------ADSILLRT------E-------EFYKDND--IHVIKGKKIISDSELNEK--KIKLQD-GTSIDFTKIY 1167 (1466)
Q Consensus 1118 ------------~~~~~~~~------~-------~~~~~~~--v~~~~~~~v~~i~d~~~~--~v~~~~-g~~~~yd~lv 1167 (1466)
...+.-+. . +.+...| +.++.+++|+++ +.... .|.+.+ +..+.+|+||
T Consensus 81 ~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I-~~~~~g~~V~t~~gg~~i~aD~VV 159 (534)
T PRK09897 81 LQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDL-QITNAGVMLATNQDLPSETFDLAV 159 (534)
T ss_pred HHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEE-EEeCCEEEEEECCCCeEEEcCEEE
Confidence 00010000 0 0112234 677788889999 66544 445444 4679999999
Q ss_pred EecCCCCCcCCCCCCCCcEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHHHhcCC-------------------
Q psy2951 1168 LATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKV------------------- 1228 (1466)
Q Consensus 1168 lAtG~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~~g------------------- 1228 (1466)
+|||..+..+. . +.. .++.+.-+...+ .... +.+|+|+|.|+++++++..|..+|
T Consensus 160 LAtGh~~p~~~-~-~~~--~yi~~pw~~~~~-~~i~-~~~V~I~GtGLt~iD~v~~Lt~~gG~F~~~~~~~~~l~y~~sg 233 (534)
T PRK09897 160 IATGHVWPDEE-E-ATR--TYFPSPWSGLME-AKVD-ACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVVFHRDNAS 233 (534)
T ss_pred ECCCCCCCCCC-h-hhc--cccCCCCcchhh-cCCC-CCeEEEECCCHHHHHHHHHHHhcCCceeccCCCcceeeecCCC
Confidence 99998432111 1 111 122222222212 2233 689999999999999999887552
Q ss_pred --CeEEEEcCCCc
Q psy2951 1229 --KSVTVVGRGAV 1239 (1466)
Q Consensus 1229 --~~v~vv~~~~~ 1239 (1466)
.+++.++|...
T Consensus 234 ~~~~I~a~SRrGl 246 (534)
T PRK09897 234 EKLNITLMSRTGI 246 (534)
T ss_pred CCceEEEEeCCCC
Confidence 26888887754
|
|
| >cd03472 Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO) | Back alignment and domain information |
|---|
Probab=98.68 E-value=2e-08 Score=97.46 Aligned_cols=74 Identities=15% Similarity=0.323 Sum_probs=59.4
Q ss_pred hhhhhhhhhhhcCCCCCCCccccceeec-CCEEEcCCCCceeecCCCccccCCCCC------------CCCeEEEEEEcC
Q psy2951 971 AQFAERNIYAVGTKCSHYGAPLVKGSLG-DGRVRCPWHGACFNIATGDIEDFPGMD------------SLPCYKVTIQND 1037 (1466)
Q Consensus 971 ~~~~~g~~~a~~~~C~h~g~~l~~g~~~-~~~~~cp~h~~~f~~~~g~~~~~p~~~------------~l~~~~v~~~~~ 1037 (1466)
.+..+|+++|+.+.|||.+++|..|... +..+.||||||+|+ .+|++...|... .|+...+.+ -.
T Consensus 37 ~r~~~g~i~A~~n~C~Hrg~~L~~g~~g~~~~i~CP~Hgw~fd-~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~v~~-~~ 114 (128)
T cd03472 37 VRQKDGSIRVFLNQCRHRGMRICRSDAGNAKAFTCTYHGWAYD-TAGNLVNVPFEKEAFCDGLDKADWGPLQARVET-YK 114 (128)
T ss_pred EECCCCCEEEEhhhCcCCCCeeeccCCCCcCEEECCcCCeEEC-CCcCEEeccCcccccccCCCHHHCCCcceeEeE-EC
Confidence 4445789999999999999999988753 45899999999999 899999887642 267777776 57
Q ss_pred CEEEEEcch
Q psy2951 1038 DSVVVQARK 1046 (1466)
Q Consensus 1038 ~~~~~~~~~ 1046 (1466)
+.+++....
T Consensus 115 g~vfv~~~~ 123 (128)
T cd03472 115 GLIFANWDA 123 (128)
T ss_pred CEEEEEcCC
Confidence 788886543
|
ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. BPDO degrades biphenyls and polychlorinated biphenyls (PCB's) while CumDO degrades cumene (isopropylbenzene), an aromatic hydrocarbon that is i |
| >COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.7e-07 Score=99.97 Aligned_cols=128 Identities=16% Similarity=0.176 Sum_probs=87.3
Q ss_pred cccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCe--eecCEEEEeeccccCcccccc---------
Q psy2951 1244 SLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTT--IPADLVIVGIGTVLNTNYLDG--------- 1312 (1466)
Q Consensus 1244 ~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~--i~~D~vv~a~G~~p~~~~~~~--------- 1312 (1466)
.++-.+.+.|.+.+++.|...+.+.+|...+ -.+++++.+.+.++.. +.+|..|+|+|.--...+..+
T Consensus 255 llGiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~-~~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae~d~I~EPIf 333 (421)
T COG3075 255 LLGIRLHNQLQRQFEQLGGLWMPGDEVKKAT-CKGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAERDKIYEPIF 333 (421)
T ss_pred hhhhhHHHHHHHHHHHcCceEecCCceeeee-eeCCeEEEEEecccccCCCChhHeeeeccccccccchhhhhhhhcchh
Confidence 4556788889999999999999999999998 6778899999888765 479999999996544332111
Q ss_pred -CCceeeCC-----------------CeEEeCCCcccc-----CCCEEEecccccCCCccCCCceeeeecHHHHHHHHHH
Q psy2951 1313 -KGVELNGQ-----------------KAVVVNEYLETN-----VPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRI 1369 (1466)
Q Consensus 1313 -~gl~~~~~-----------------G~i~vd~~~~t~-----~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~ 1369 (1466)
..+.-+.+ =++.+|+++|.+ ..|+||+|.+....++..-| . .-..|+..|-.
T Consensus 334 ~ldi~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGfdpi~eg----c-GsGVaivta~~ 408 (421)
T COG3075 334 DLDILQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFDPIAEG----C-GSGVAIVTALH 408 (421)
T ss_pred hcccccCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCCcHHHhc----C-CcchHHHHHHH
Confidence 00100000 147888888875 57999999988765543110 0 00346666777
Q ss_pred HHHHhcCC
Q psy2951 1370 AALNMVEK 1377 (1466)
Q Consensus 1370 aa~~i~g~ 1377 (1466)
||..|+++
T Consensus 409 aa~qi~~~ 416 (421)
T COG3075 409 AAEQIAER 416 (421)
T ss_pred HHHHHHHH
Confidence 77776643
|
|
| >PRK09897 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=3e-07 Score=111.77 Aligned_cols=155 Identities=17% Similarity=0.220 Sum_probs=91.8
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCC----CCCCc-----c---------------chhcccC----
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP----YDRVK-----L---------------SKQLDIK---- 646 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~----~~~~~-----~---------------~~~~~~~---- 646 (1466)
+++|+||||||+|+++|..|.+.+...+|+++|+...++ |.... + ..+....
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~ 80 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSH 80 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHH
Confidence 468999999999999999999987767899999865333 11100 0 0000000
Q ss_pred ------------ccccccc-------------CHhHhhhCC--cEEEEceEEEEecccc--ccEEEccC-CCEEecCEEE
Q psy2951 647 ------------ADSILLR-------------TEEFYKDND--IHVIKGKKIISDSELN--EKKIKLQD-GTSIDFTKIY 696 (1466)
Q Consensus 647 ------------~~~~~~~-------------~~~~~~~~g--v~~~~~~~v~~i~~~~--~~~v~~~~-~~~~~~d~lv 696 (1466)
...+..+ +.+.+...| +.++.+++|+.+ +.. ...+++.+ +..+.+|+||
T Consensus 81 ~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I-~~~~~g~~V~t~~gg~~i~aD~VV 159 (534)
T PRK09897 81 LQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDL-QITNAGVMLATNQDLPSETFDLAV 159 (534)
T ss_pred HHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEE-EEeCCEEEEEECCCCeEEEcCEEE
Confidence 0011111 111223344 678888789988 433 33455444 4679999999
Q ss_pred EcCCCCCCcCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhcc
Q psy2951 697 LATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASK 756 (1466)
Q Consensus 697 iAtG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~ 756 (1466)
||||..+..+ +.+.. .++.+..... ..... .+.+|+|+|.|.++++.+..|...
T Consensus 160 LAtGh~~p~~--~~~~~--~yi~~pw~~~-~~~~i-~~~~V~I~GtGLt~iD~v~~Lt~~ 213 (534)
T PRK09897 160 IATGHVWPDE--EEATR--TYFPSPWSGL-MEAKV-DACNVGIMGTSLSGLDAAMAVAIQ 213 (534)
T ss_pred ECCCCCCCCC--Chhhc--cccCCCCcch-hhcCC-CCCeEEEECCCHHHHHHHHHHHhc
Confidence 9999643211 10111 1111111111 11122 379999999999999999988755
|
|
| >TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.7e-06 Score=98.91 Aligned_cols=145 Identities=19% Similarity=0.175 Sum_probs=97.7
Q ss_pred HHHhc-cCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCC--cEEecCEEE
Q psy2951 751 AFCAS-KVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG--TTIPADLVI 827 (1466)
Q Consensus 751 ~~l~~-~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~vi 827 (1466)
..|.+ .|..|.-+-..| +...+..+.+.+.+.+++.|++++.+.+|.++.. +++++..+.+.++ ..+.+|.+|
T Consensus 240 ~~L~~~~g~~v~E~ptlP---PSv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~-~~~~v~~V~t~~g~~~~l~AD~vV 315 (419)
T TIGR03378 240 RELEQATGLTLCELPTMP---PSLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEF-EGNRVTRIHTRNHRDIPLRADHFV 315 (419)
T ss_pred HHHHHHHCCCEEeCCCCC---CCCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEe-eCCeEEEEEecCCccceEECCEEE
Confidence 34433 377777664333 2234577888899999999999999999999873 3456666776665 489999999
Q ss_pred EccccccCcccccc--------CCceee----C---------------CCcEEeCCCCCC-----CCCCeEEeccccccC
Q psy2951 828 VGIGTVLNTNYLDG--------KGVELN----G---------------QKAVVVNEYLET-----NVPGVYAGGDIAYAP 875 (1466)
Q Consensus 828 ~a~G~~p~~~~~~~--------~gl~~~----~---------------~G~i~vd~~~~t-----~~~~iya~GD~~~~~ 875 (1466)
+|+|.--...|++. +++.+. . .-.+.+|+.+|. ..+|+||+|-+....
T Consensus 316 LAaGaw~S~gL~a~l~~i~Epif~L~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~ 395 (419)
T TIGR03378 316 LASGSFFSNGLVAEFDKIYEPIFGLDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGY 395 (419)
T ss_pred EccCCCcCHHHHhhcCceeeeccCCCcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhhcCC
Confidence 99998722233222 122221 0 114778988883 389999999998776
Q ss_pred CcccCCceeeeccHHHHHHHHHHHHHHhc
Q psy2951 876 LHSFYNKNASIGHYQLAQYHGRIAALNMV 904 (1466)
Q Consensus 876 ~~~~~~~~~~~~~~~~A~~~g~~aA~~i~ 904 (1466)
+....+ .+. -.|+..|..||++|.
T Consensus 396 d~~~~g----cG~-GVai~Ta~~aa~~i~ 419 (419)
T TIGR03378 396 DPIFEG----CGS-GVAVSTALHAAEQII 419 (419)
T ss_pred ChHhcC----CCc-hhHHHHHHHHHHhhC
Confidence 654211 112 378999999998874
|
Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase. |
| >cd03539 Rieske_RO_Alpha_S5H This alignment model represents the N-terminal rieske iron-sulfur domain of the oxygenase alpha subunit (NagG) of salicylate 5-hydroxylase (S5H) | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.8e-08 Score=95.62 Aligned_cols=73 Identities=22% Similarity=0.400 Sum_probs=59.2
Q ss_pred hhhhhhhhhhcCCCCCCCccccceeec-CCEEEcCCCCceeecCCCccccCCCC---------------------CCCCe
Q psy2951 972 QFAERNIYAVGTKCSHYGAPLVKGSLG-DGRVRCPWHGACFNIATGDIEDFPGM---------------------DSLPC 1029 (1466)
Q Consensus 972 ~~~~g~~~a~~~~C~h~g~~l~~g~~~-~~~~~cp~h~~~f~~~~g~~~~~p~~---------------------~~l~~ 1029 (1466)
+..+|+++|+.+.|||.+++|..|... ...+.||||||+|++ +|++...|.. ..|..
T Consensus 30 r~~dg~v~A~~n~C~Hrg~~L~~g~~~~~~~l~CPyHgw~fdl-~G~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 108 (129)
T cd03539 30 RDPDGGINVVENVCAHRGMRFCRERNGNAKDFVCPYHQWNYSL-KGDLQGVPFRRGVKKDGKVNGGMPKDFKTKDHGLTK 108 (129)
T ss_pred ECCCCCEEEEeccCcCCCCEeeeeccCccCEEECCCCCCEECC-CCCEeeccccccccccccccccccCCcChHHCCCce
Confidence 445789999999999999999988753 468999999999995 5999876642 23888
Q ss_pred EEEEEEcCCEEEEEcch
Q psy2951 1030 YKVTIQNDDSVVVQARK 1046 (1466)
Q Consensus 1030 ~~v~~~~~~~~~~~~~~ 1046 (1466)
|++++ ..+.++++...
T Consensus 109 ~~v~~-~~g~Ifv~~~~ 124 (129)
T cd03539 109 LKVAT-RGGVVFASFDH 124 (129)
T ss_pred eeEeE-ECCEEEEEeCC
Confidence 88887 68888887553
|
S5H converts salicylate (2-hydroxybenzoate), a metabolic intermediate of phenanthrene, to gentisate (2,5-dihydroxybenzoate) as part of an alternate pathway for naphthalene catabolism. S5H is a multicomponent enzyme made up of NagGH (the oxygenase components), NagAa (the ferredoxin reductase component), and NagAb (the ferredoxin component). The oxygenase component is made up of alpha (NagG) and beta (NagH) subunits. |
| >COG0723 QcrA Rieske Fe-S protein [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.61 E-value=7.1e-08 Score=100.28 Aligned_cols=67 Identities=22% Similarity=0.433 Sum_probs=57.5
Q ss_pred eEEEEeCCCCCCCcccCC-ceecCCEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCeEEEEEc
Q psy2951 506 NIYAVGTKCSHYGAPLVK-GSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQA 573 (1466)
Q Consensus 506 ~~~a~~~~C~H~~~~l~~-g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~~~~~ 573 (1466)
++.|++..|+|+||...| +.-..+.|.|||||++|++. |++..+|+..+|+..+++.+.+..+++..
T Consensus 100 ~~~a~~~iCtHlGC~~~~~~~~~~~~~~CPCHGS~yd~~-g~vv~GPA~~~L~~~~~~~~~d~~~~~~~ 167 (177)
T COG0723 100 EIVAYSAICTHLGCTVPWNNAGAEGGFFCPCHGSRYDPD-GGVVKGPAPRPLPIPPLEYDSDKLYLIGL 167 (177)
T ss_pred cEEEEeeeccCCCCccCcccCCCCCeEEccCCCCeEcCC-CCeeCCCCCCCcCCceEEEeCCceEEEEe
Confidence 556999999999999999 45556799999999999997 66889999999999999888776666543
|
|
| >cd03542 Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenase (RO) family, 2-Halobenzoate 1,2-dioxygenase (HBDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth | Back alignment and domain information |
|---|
Probab=98.55 E-value=8.7e-08 Score=92.13 Aligned_cols=62 Identities=27% Similarity=0.493 Sum_probs=49.1
Q ss_pred hhhhhhhhhhhcCCCCCCCccccceeec-CCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEE
Q psy2951 971 AQFAERNIYAVGTKCSHYGAPLVKGSLG-DGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTI 1034 (1466)
Q Consensus 971 ~~~~~g~~~a~~~~C~h~g~~l~~g~~~-~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~ 1034 (1466)
.+..+|+++|+.+.|||.+++|..|... +..+.||+|+|+|+ .+|++...|. .++..|++.+
T Consensus 29 ~r~~~g~v~A~~n~C~Hrg~~L~~g~~~~~~~i~CP~Hg~~Fd-~~G~~~~~p~-~~~~~y~~~~ 91 (123)
T cd03542 29 TRDKDGELNAFINACSHRGAMLCRRKQGNKGTFTCPFHGWTFS-NTGKLLKVKD-PKTAGYPEGF 91 (123)
T ss_pred EECCCCCEEEEcccCcCCCCccccccccCCCEEECcCCCCEec-CCccEEECCc-ccccCcCccc
Confidence 3445789999999999999999988663 45899999999999 9999998764 2334555443
|
The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. HBDO catalyzes the double hydroxylation of 2-halobenzoates with concomitant release of halogenide and carbon dioxide, yielding catechol. |
| >PLN02518 pheophorbide a oxygenase | Back alignment and domain information |
|---|
Probab=98.54 E-value=8.4e-08 Score=115.00 Aligned_cols=89 Identities=20% Similarity=0.353 Sum_probs=73.1
Q ss_pred CCeEEEEEeecCchhhhhh-hhhhhhhhcCCCCCCCccccceeec-CCEEEcCCCCceeecCCCccccCCCC--------
Q psy2951 955 ADKVLAILTVGMDPLAAQF-AERNIYAVGTKCSHYGAPLVKGSLG-DGRVRCPWHGACFNIATGDIEDFPGM-------- 1024 (1466)
Q Consensus 955 ~~~i~g~~~~g~~~~~~~~-~~g~~~a~~~~C~h~g~~l~~g~~~-~~~~~cp~h~~~f~~~~g~~~~~p~~-------- 1024 (1466)
+++...+.+.|.+.++.+. .+|+++|+.+.|||.+++|+.|.+. ++.+.||||||+|+. +|+|...|..
T Consensus 102 ~g~p~~~~llG~~lVl~Rd~~~G~~~A~~d~CPHRgapLS~G~v~~~g~L~CpYHGW~Fd~-~G~c~~IP~~~~~~~~~~ 180 (539)
T PLN02518 102 PSVPTPFQLLGRDLVLWKDPNQGEWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDG-CGSCTRIPQAAPEGPEAR 180 (539)
T ss_pred CCCeEEEEECCEEEEEEEECCCCeEEEEcccCcCcCCCcccceecCCCEEEcCCCCCEEcC-CCCeeecccccccccccc
Confidence 4556666777777777776 6899999999999999999999996 689999999999995 6999876532
Q ss_pred ------CCCCeEEEEEEcCCEEEEEcc
Q psy2951 1025 ------DSLPCYKVTIQNDDSVVVQAR 1045 (1466)
Q Consensus 1025 ------~~l~~~~v~~~~~~~~~~~~~ 1045 (1466)
..++.|++++ .+|.+++...
T Consensus 181 ~~~~~~a~v~sypv~e-~~GlIwV~~~ 206 (539)
T PLN02518 181 AVKSPRACAIKFPTMV-SQGLLFVWPD 206 (539)
T ss_pred cccCcccccceEeEEE-ECCEEEEEeC
Confidence 2378999998 7888888764
|
|
| >TIGR03228 anthran_1_2_A anthranilate 1,2-dioxygenase, large subunit | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.5e-07 Score=110.22 Aligned_cols=80 Identities=20% Similarity=0.390 Sum_probs=60.7
Q ss_pred CCCCCEEEEEeeCCeEEEEeCCCCCCCcccCC-ceecCCEEEccCCCceEECCCCeeecCCCC-----------CCCCeE
Q psy2951 492 ASSTPKTLAQSTTSNIYAVGTKCSHYGAPLVK-GSLGDGRVRCPWHGACFNIATGDIEDFPGM-----------DSLPCY 559 (1466)
Q Consensus 492 ~~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~-g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~-----------~~l~~~ 559 (1466)
.++..++++++.+|+++|+.|.|||+|++|+. +......++||||||.|+.+ |++...|.. ..|+..
T Consensus 59 ig~~pviv~R~~dG~i~a~~N~C~HRGa~L~~~~~Gn~~~~~CPYHgW~y~~d-G~L~~vp~~~~y~~~fd~~~~~L~~~ 137 (438)
T TIGR03228 59 AGRQPMIVTRDGKGELHALVNACQHRGATLTRVGKGNQSTFTCPFHAWCYKSD-GRLVKVKAPGEYCEGFDKATRGLKKA 137 (438)
T ss_pred ECCeEEEEEECCCCCEEEEcccCCCCCCccccCCccccCEEEcCCCCCcccCC-CceeecCcccccCCCCChhhCCCcce
Confidence 34456666667899999999999999999986 66666789999999999974 999876532 135566
Q ss_pred EEEEEcCeEEEEE
Q psy2951 560 KVTIQNDDSVVVQ 572 (1466)
Q Consensus 560 ~v~i~~~~~~~~~ 572 (1466)
++....+-+|++-
T Consensus 138 rv~~y~GfIFv~l 150 (438)
T TIGR03228 138 RIASYRGFVFVSL 150 (438)
T ss_pred eEEEECCEEEEEe
Confidence 7766666555543
|
Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the large subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase large subunit, among the larger set of ring-hydroxylating dioxygenases. |
| >PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.4e-07 Score=111.13 Aligned_cols=106 Identities=20% Similarity=0.258 Sum_probs=58.7
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCC-------CCCCc--------------------cc-hhc----
Q psy2951 596 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP-------YDRVK--------------------LS-KQL---- 643 (1466)
Q Consensus 596 ~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~-------~~~~~--------------------~~-~~~---- 643 (1466)
+||+|||||||||.||+.|++.|.+ |+++|++...+ ..++. +. ..+
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~--V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~ 78 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGAR--VLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFS 78 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT----EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCC--EEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCC
Confidence 5899999999999999999999988 77888764322 00000 00 000
Q ss_pred -----------c---------------cCcccccccCHhHhhhCCcEEEEceEEEEecccc-c-cEEEccCCCEEecCEE
Q psy2951 644 -----------D---------------IKADSILLRTEEFYKDNDIHVIKGKKIISDSELN-E-KKIKLQDGTSIDFTKI 695 (1466)
Q Consensus 644 -----------~---------------~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~-~-~~v~~~~~~~~~~d~l 695 (1466)
+ ....++..-+...+++.|++++++++|.++...+ . ..|.++++..+.+|+|
T Consensus 79 ~~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~v 158 (409)
T PF03486_consen 79 PEDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAV 158 (409)
T ss_dssp HHHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEE
T ss_pred HHHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEE
Confidence 0 0122223333455667899999999999993222 2 4566667789999999
Q ss_pred EEcCCCCC
Q psy2951 696 YLATGSSP 703 (1466)
Q Consensus 696 viAtG~~~ 703 (1466)
|||||+..
T Consensus 159 ILAtGG~S 166 (409)
T PF03486_consen 159 ILATGGKS 166 (409)
T ss_dssp EE----SS
T ss_pred EEecCCCC
Confidence 99999654
|
; PDB: 2I0Z_A 3V76_A 2GQF_A. |
| >cd03475 Rieske_SoxF_SoxL SoxF and SoxL family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.5e-07 Score=93.07 Aligned_cols=62 Identities=19% Similarity=0.361 Sum_probs=53.0
Q ss_pred hhhhhhhcCCCCCCCccccc---------------eeecCCEEEcCCCCceeecCCCc-cccCCCCCCCCeEEEEEEc
Q psy2951 975 ERNIYAVGTKCSHYGAPLVK---------------GSLGDGRVRCPWHGACFNIATGD-IEDFPGMDSLPCYKVTIQN 1036 (1466)
Q Consensus 975 ~g~~~a~~~~C~h~g~~l~~---------------g~~~~~~~~cp~h~~~f~~~~g~-~~~~p~~~~l~~~~v~~~~ 1036 (1466)
+++++|+++.|||.|+++.. |...++.+.||||+++||+++|. +...|+..+|+.|.++++.
T Consensus 74 ~g~IvA~S~iCpHlGc~l~~~~~y~~~~~~~~~~~g~~~~~~i~CPcHgS~FD~~tGg~v~~GPA~~pLp~~~L~~d~ 151 (171)
T cd03475 74 NKSIVAFSAICQHLGCQPPPIVSYPSYYPPDKAPGLASKGAVIHCCCHGSTYDPYKGGVVLTGPAPRPLPAVILEYDS 151 (171)
T ss_pred CCEEEEEeCcCCCCCCcccccccccccccccccccccccCCEEEcCCCCCEEeCCCCCeEcCCCCCCCcCEeEEEEeC
Confidence 46799999999999997753 45567899999999999999884 6667999999999999964
|
SoxF is a subunit of the terminal oxidase supercomplex SoxM in the plasma membrane of Sulfolobus acidocaldarius that combines features of a cytochrome bc(1) complex and a cytochrome. The Rieske domain of SoxF has a 12 residue insertion which is not found in eukaryotic and bacterial Rieske proteins and is thought to influence the redox properties of the iron-sulfur cluster. SoxL is a Rieske protein which may be part of an archaeal bc-complex homologue whose physiological function is still unknown. SoxL has two features not seen in other Rieske proteins; (i) a significantly greater distance between the two cluster-binding sites and (ii) an unexpected Pro - Asp substitution at one of the cluster binding sites. SoxF and SoxL are found in archaea and in bacteria. |
| >TIGR03229 benzo_1_2_benA benzoate 1,2-dioxygenase, large subunit | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.6e-07 Score=107.43 Aligned_cols=60 Identities=27% Similarity=0.488 Sum_probs=49.6
Q ss_pred CCCCCEEEEEeeCCeEEEEeCCCCCCCcccCCcee-cCCEEEccCCCceEECCCCeeecCCC
Q psy2951 492 ASSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSL-GDGRVRCPWHGACFNIATGDIEDFPG 552 (1466)
Q Consensus 492 ~~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~-~~~~~~Cp~H~~~f~~~~G~~~~~p~ 552 (1466)
.++..++++++.+|+++|+.|.|||+|++|+.+.. ....++||||||+|+ .+|++...|.
T Consensus 59 ~~~~~vvv~R~~dG~i~af~N~C~HRga~L~~~~~g~~~~~~CPyHgW~f~-~~G~l~~vP~ 119 (433)
T TIGR03229 59 MGRQPIFIARNKDGELNAFINACSHRGAMLCRHKRGNKTTYTCPFHGWTFN-NSGKLLKVKD 119 (433)
T ss_pred ECCeEEEEEECCCCcEEEEeCcCCCCCCCcccccccCCCEEEcCCCCCEec-CCcceEeCCC
Confidence 34455566666799999999999999999998754 456899999999999 5799998865
|
Benzoate 1,2-dioxygenase (EC 1.14.12.10) belongs to the larger family of aromatic ring-hydroxylating dioxygenases. Members of this family all act on benzoate, but may have additional activities on various benozate analogs. This model describes the large subunit. Between the trusted and noise cutoffs are similar enzymes, likely to act on benzoate but perhaps best identified according to some other activity, such as 2-chlorobenzoate 1,2-dioxygenase (1.14.12.13). |
| >cd03538 Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygenase (RO) family, Anthranilate 1,2-dioxygenase (AntDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.7e-07 Score=93.40 Aligned_cols=75 Identities=19% Similarity=0.376 Sum_probs=56.2
Q ss_pred hhhhhhhhhhhhhcCCCCCCCcccccee-ec-CCEEEcCCCCceeecCCCccccCCCCC--------------CCCeE-E
Q psy2951 969 LAAQFAERNIYAVGTKCSHYGAPLVKGS-LG-DGRVRCPWHGACFNIATGDIEDFPGMD--------------SLPCY-K 1031 (1466)
Q Consensus 969 ~~~~~~~g~~~a~~~~C~h~g~~l~~g~-~~-~~~~~cp~h~~~f~~~~g~~~~~p~~~--------------~l~~~-~ 1031 (1466)
++.+..+|+++|+.+.|||.+++|..+. .. +..+.||+|||+|+ .+|++...|... .|+.+ .
T Consensus 49 ~v~r~~~g~v~A~~n~CpHrg~~L~~~~~g~~~~~i~CP~Hgw~Fd-~~G~~~~~p~~~~~~~~~~~~~~~~~~L~~~~~ 127 (146)
T cd03538 49 VMVRHTDGSVHVLYNRCPHKGTKIVSDGCGNTGKFFRCPYHAWSFK-TDGSLLAIPLKKGYEGTGFDPSHADKGMQRVGA 127 (146)
T ss_pred EEEECCCCCEEEEeccCcCCCCEeecccccccCCEEECCCCCCEEC-CCCCEEECCchhcCCcccCCcchhhCCCCccee
Confidence 3445557899999999999999996433 32 56899999999999 499999777422 35566 4
Q ss_pred EEEEcCCEEEEEcc
Q psy2951 1032 VTIQNDDSVVVQAR 1045 (1466)
Q Consensus 1032 v~~~~~~~~~~~~~ 1045 (1466)
+++ -.+.++++..
T Consensus 128 v~~-~~g~ifv~~~ 140 (146)
T cd03538 128 VDI-YRGFVFARLS 140 (146)
T ss_pred EEE-ECCEEEEEcC
Confidence 554 6778888654
|
The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. AntDO converts anthranilate to catechol, a naturally occurring compound formed through tryptophan degradation and an important intermediate in the metabolism of many N-heterocyclic compounds such as indole, o-nitrobenzoate, carbazole, and quinaldine. |
| >COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.33 E-value=7.5e-06 Score=87.70 Aligned_cols=127 Identities=19% Similarity=0.236 Sum_probs=85.9
Q ss_pred cCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEE--ecCEEEEccccccCcccccc--------CC
Q psy2951 774 LGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTI--PADLVIVGIGTVLNTNYLDG--------KG 843 (1466)
Q Consensus 774 ~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i--~~D~vi~a~G~~p~~~~~~~--------~g 843 (1466)
++-.....+...+++.|..+..+.+|...+ -.+++++.+.+.+...| .+|..|+|+|.--...+..+ .+
T Consensus 256 lGiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~-~~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae~d~I~EPIf~ 334 (421)
T COG3075 256 LGIRLHNQLQRQFEQLGGLWMPGDEVKKAT-CKGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAERDKIYEPIFD 334 (421)
T ss_pred hhhhHHHHHHHHHHHcCceEecCCceeeee-eeCCeEEEEEecccccCCCChhHeeeeccccccccchhhhhhhhcchhh
Confidence 445667888899999999999999999887 45678888888887654 58999999996544332111 01
Q ss_pred cee--eC-----------------CCcEEeCCCCCCC-----CCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHH
Q psy2951 844 VEL--NG-----------------QKAVVVNEYLETN-----VPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIA 899 (1466)
Q Consensus 844 l~~--~~-----------------~G~i~vd~~~~t~-----~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~a 899 (1466)
+.+ ++ .-.+.+|+++|.+ ..|+||+|.+.+..++...| -+. ..|+..|..|
T Consensus 335 ldi~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGfdpi~eg----cGs-GVaivta~~a 409 (421)
T COG3075 335 LDILQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFDPIAEG----CGS-GVAIVTALHA 409 (421)
T ss_pred cccccCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCCcHHHhc----CCc-chHHHHHHHH
Confidence 111 00 0136677777753 67899999998776654211 111 3677778888
Q ss_pred HHHhccC
Q psy2951 900 ALNMVEK 906 (1466)
Q Consensus 900 A~~i~~~ 906 (1466)
|+.|+.+
T Consensus 410 a~qi~~~ 416 (421)
T COG3075 410 AEQIAER 416 (421)
T ss_pred HHHHHHH
Confidence 8887654
|
|
| >PRK08401 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.6e-06 Score=103.01 Aligned_cols=54 Identities=19% Similarity=0.209 Sum_probs=38.2
Q ss_pred CccEEECCCCCcCCCCEEEecccccccCccCCCCcceec-cHHHHHHHHHHHHHHhcC
Q psy2951 297 QKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIG-HYQLAQYHGRIAALNMVE 353 (1466)
Q Consensus 297 ~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~-~~~~A~~~g~~aa~~i~~ 353 (1466)
.|.|.+|...||++||+||+|+|+..- ++|.....+ ....++..|+.|+++++.
T Consensus 310 ~GGi~vd~~~~t~IpGLyAaGE~a~~G---~hG~nrl~gnsl~~~~v~G~~ag~~aa~ 364 (466)
T PRK08401 310 IGGISVDTFYRTGIKNLYAIGEAASNG---FHGANRLASNSLLECIVSGLEVARTISR 364 (466)
T ss_pred CCCEEECCCCcccCCCEEECccccccC---CCCCCcchhHHHHHHHHHHHHHHHHHhh
Confidence 478999999999999999999997421 123222122 234467789999999875
|
|
| >TIGR00551 nadB L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.1e-05 Score=99.44 Aligned_cols=54 Identities=22% Similarity=0.234 Sum_probs=38.8
Q ss_pred CCcEEeCCCCCCCCCCeEEeccccc-cCCcccCCceeeeccHHHHHHHHHHHHHHhcc
Q psy2951 849 QKAVVVNEYLETNVPGVYAGGDIAY-APLHSFYNKNASIGHYQLAQYHGRIAALNMVE 905 (1466)
Q Consensus 849 ~G~i~vd~~~~t~~~~iya~GD~~~-~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~ 905 (1466)
.|.|.+|.+.||+.||+||+|+|+. ... +..+..-.....|...|+.|+++++.
T Consensus 333 ~GGi~vd~~~~t~I~GLyAaGE~a~~g~h---Ganrl~g~sl~~~~v~G~~Ag~~aa~ 387 (488)
T TIGR00551 333 CGGISVDDHGRTTVPGLYAIGEVACTGLH---GANRLASNSLLECLVFGWSAAEDISR 387 (488)
T ss_pred cCCEEECCCCcccCCCEEECccccccccC---cccccchhHHHHHHHHHHHHHHHHHh
Confidence 4789999999999999999999963 221 11111112346788889999999864
|
L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA. |
| >PRK07804 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=1e-05 Score=100.69 Aligned_cols=36 Identities=22% Similarity=0.269 Sum_probs=31.5
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcC
Q psy2951 41 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITD 76 (1466)
Q Consensus 41 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~ 76 (1466)
+.++||||||+|.|||+||..+++.|.+|.|++...
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~ 49 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAA 49 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccC
Confidence 346899999999999999999999999988876544
|
|
| >PRK08401 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=5.9e-06 Score=101.16 Aligned_cols=54 Identities=15% Similarity=0.126 Sum_probs=37.9
Q ss_pred CCcEEeCCCCCCCCCCeEEeccccc-cCCcccCCceeeeccHHHHHHHHHHHHHHhcc
Q psy2951 849 QKAVVVNEYLETNVPGVYAGGDIAY-APLHSFYNKNASIGHYQLAQYHGRIAALNMVE 905 (1466)
Q Consensus 849 ~G~i~vd~~~~t~~~~iya~GD~~~-~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~ 905 (1466)
-|.|.+|...||++|++||+|+|+. ... +..+..-.....++..|+.|++++..
T Consensus 310 ~GGi~vd~~~~t~IpGLyAaGE~a~~G~h---G~nrl~gnsl~~~~v~G~~ag~~aa~ 364 (466)
T PRK08401 310 IGGISVDTFYRTGIKNLYAIGEAASNGFH---GANRLASNSLLECIVSGLEVARTISR 364 (466)
T ss_pred CCCEEECCCCcccCCCEEECccccccCCC---CCCcchhHHHHHHHHHHHHHHHHHhh
Confidence 4789999999999999999999974 221 11111112335677889999998864
|
|
| >PRK12842 putative succinate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.1e-06 Score=110.36 Aligned_cols=102 Identities=17% Similarity=0.224 Sum_probs=74.8
Q ss_pred CCCcEEEECCCh--HHHHHHHHHhccCCeEEEEeecCccCcc-------------ccCHHHHHHHHHHHHhcCcEEEccc
Q psy2951 733 PESNVVVIGSSF--IGMEAAAFCASKVKSVTVVGRGAVPFQE-------------SLGKEVGERITKLFESKGVKFVMKA 797 (1466)
Q Consensus 733 ~~~~vvVvG~G~--~g~e~A~~l~~~g~~V~lv~~~~~~~~~-------------~~~~~~~~~~~~~l~~~gv~~~~~~ 797 (1466)
..+++.|+|+++ ++.+++..+...+..++++.+....+.. .....+.+.+.+.+++.|++++.++
T Consensus 156 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~~Gv~i~~~~ 235 (574)
T PRK12842 156 PLKTITFIGMMFNSSNADLKHFFNATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALDLGIPILTGT 235 (574)
T ss_pred CcccccccceecccchHHHHHHHhhccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHhCCCEEEeCC
Confidence 478899999998 8999999999888888776554433211 0124566677888889999999999
Q ss_pred eEEEEEecCCCceEEEECCC--Cc-EEecC-EEEEccccccC
Q psy2951 798 NVSSFEKNEKNDVTAANLDN--GT-TIPAD-LVIVGIGTVLN 835 (1466)
Q Consensus 798 ~v~~i~~~~~~~~~~v~~~~--g~-~i~~D-~vi~a~G~~p~ 835 (1466)
.++++.. +++++..+...+ ++ .+.++ .||+|+|..++
T Consensus 236 ~v~~l~~-~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 276 (574)
T PRK12842 236 PARELLT-EGGRVVGARVIDAGGERRITARRGVVLACGGFSH 276 (574)
T ss_pred EEEEEEe-eCCEEEEEEEEcCCceEEEEeCCEEEEcCCCccc
Confidence 9999874 356666665533 33 47786 79999997765
|
|
| >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.1e-06 Score=93.87 Aligned_cols=109 Identities=15% Similarity=0.168 Sum_probs=69.3
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCc---------cc-------hhcc-----------
Q psy2951 592 SGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK---------LS-------KQLD----------- 644 (1466)
Q Consensus 592 ~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~---------~~-------~~~~----------- 644 (1466)
.....||+||||||||++||+.|++.|++ |+++|+...++..... .. ..++
T Consensus 22 ~~~~~DVvIVGgGpAGl~AA~~la~~G~~--V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~ 99 (257)
T PRK04176 22 DYLEVDVAIVGAGPSGLTAAYYLAKAGLK--VAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLY 99 (257)
T ss_pred HhccCCEEEECccHHHHHHHHHHHhCCCe--EEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcce
Confidence 34468999999999999999999999988 7888877554321100 00 0000
Q ss_pred -cCcccccccCHhHhhhCCcEEEEceEEEEeccccccEE---Ecc-----------CCCEEecCEEEEcCCCC
Q psy2951 645 -IKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKI---KLQ-----------DGTSIDFTKIYLATGSS 702 (1466)
Q Consensus 645 -~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v---~~~-----------~~~~~~~d~lviAtG~~ 702 (1466)
.+..++...+.+...+.|++++.+++|..+...++..+ .+. +..++.++.||+|||..
T Consensus 100 ~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~ 172 (257)
T PRK04176 100 VADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHD 172 (257)
T ss_pred eccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCC
Confidence 11222233344455678999999998887732222111 110 22479999999999953
|
|
| >TIGR03171 soxL2 Rieske iron-sulfur protein SoxL2 | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.1e-06 Score=92.51 Aligned_cols=69 Identities=17% Similarity=0.285 Sum_probs=53.9
Q ss_pred CCeEEEEeCCCCCCCcccCCc------e-------------e-------c-----CCEEEccCCCceEECCC-CeeecCC
Q psy2951 504 TSNIYAVGTKCSHYGAPLVKG------S-------------L-------G-----DGRVRCPWHGACFNIAT-GDIEDFP 551 (1466)
Q Consensus 504 ~g~~~a~~~~C~H~~~~l~~g------~-------------~-------~-----~~~~~Cp~H~~~f~~~~-G~~~~~p 551 (1466)
++.+.|++..|+|+||++..- . + + .+.+.||||+++||+.+ |.+..+|
T Consensus 175 ~~~IVAyS~IC~H~GC~~~~~~~Ypp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CPCHgS~FD~~~gg~Vv~GP 254 (321)
T TIGR03171 175 NKSIVAYSAICQHLGCTPPYIHFYPPNYVNPSQLTAPEPDQLTAQALLAAKQANVPALIHCDCHGSTYDPYHGAAVLTGP 254 (321)
T ss_pred CCCEEEEecccCcCCCCcchhhccCcccccccccccccccccchhhhhhhhccCCCCeEECCCCCCEECCCCCCceeCCC
Confidence 578999999999999988221 0 1 1 13899999999999987 5899999
Q ss_pred CCCCCCeEEEEEEcC--eEEEEE
Q psy2951 552 GMDSLPCYKVTIQND--DSVVVQ 572 (1466)
Q Consensus 552 ~~~~l~~~~v~i~~~--~~~~~~ 572 (1466)
+..+|..++++.+.+ .++...
T Consensus 255 A~rpLp~i~l~~d~~~~~l~AvG 277 (321)
T TIGR03171 255 TVRPLPAVILEWDSSTDYLYAIG 277 (321)
T ss_pred CCCCCCcceEEEeCCCCeEEEEe
Confidence 999999999988743 344433
|
This iron-sulfur protein is found in a contiguous genomic region with subunits of cytochrome b558/566 in several archaeal species, and appears to be part of a cytochrome bc1-analogous system. |
| >PF14721 AIF_C: Apoptosis-inducing factor, mitochondrion-associated, C-term; PDB: 3GD4_A 1GV4_A 3GD3_A 1M6I_A | Back alignment and domain information |
|---|
Probab=98.22 E-value=5.2e-06 Score=75.46 Aligned_cols=81 Identities=21% Similarity=0.215 Sum_probs=50.7
Q ss_pred HHHHhcCCCCCCCCCccceeccc-cccEEEEeeCCCCc-------------------------------------eEEEc
Q psy2951 1370 AALNMVEKKTSLSTIPFFWTMLF-GVGFRFAGYAAGHT-------------------------------------QVDIV 1411 (1466)
Q Consensus 1370 aa~~i~g~~~~~~~~p~~w~~~~-~~~~~~~g~~~~~~-------------------------------------~~~~~ 1411 (1466)
|++||.|...||...|+|||+++ +..++.+|...+.- .....
T Consensus 1 AG~NM~ga~~py~hq~~fwSdlgp~vgyeAvG~~DS~L~Tv~v~a~~~~~~~~k~~~e~~~~~~~s~~~~~~~~~~~~~~ 80 (133)
T PF14721_consen 1 AGENMTGANKPYWHQSMFWSDLGPDVGYEAVGIVDSSLPTVSVWAKPSEKDTPKAAVEASGSGIRSESENEAAASSSEKE 80 (133)
T ss_dssp HHHHHTTT---S-S--EEEEESSTTEEEEEEES--TTS-EEEEEE---TTSSHHHHHHHHS-S-HHHHC-S---SEEEE-
T ss_pred CCccccCCCCcccccchhHhhcCCCcCeEEeeeccCCCceeeeeeccccccChhhhhhcccccccCccccccccccccCC
Confidence 68999999999999999999985 77788777532110 00000
Q ss_pred ---------CCcC-C---ceEEEEEEeCCEEEEEEEecCcHHHHHHHHHHHc
Q psy2951 1412 ---------GDLE-A---LKFTAYYSNADKVLAILTVGMDPLAAQFAERIKM 1450 (1466)
Q Consensus 1412 ---------~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1450 (1466)
.++. . ++-++||++|+++||++++|-...+..+|++|++
T Consensus 81 ~~~~~~~~~~~~~~~e~~~kGVVfYLrd~~VvGillWNvf~~~~~AR~ii~~ 132 (133)
T PF14721_consen 81 SSSVSAAEAKSPEEGEDYGKGVVFYLRDDRVVGILLWNVFNRMPIARKIIAE 132 (133)
T ss_dssp ----------S---GGG-SEEEEEEEETTEEEEEEEES--S-HHHHHHHHHH
T ss_pred CcccccccccCcccccccCceEEEEEcCCeEEEEEEeeccCccHHHHHHhhc
Confidence 0000 1 2347899999999999999999999999999975
|
|
| >PLN02463 lycopene beta cyclase | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.8e-06 Score=101.95 Aligned_cols=114 Identities=22% Similarity=0.262 Sum_probs=68.1
Q ss_pred CCCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCC--CCC-------Cccchhcc-----------------
Q psy2951 39 SSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP--YDR-------VKLSKQLD----------------- 92 (1466)
Q Consensus 39 ~~~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~--~~~-------~~~~~~~~----------------- 92 (1466)
.....+||+||||||||+++|..|++.|++|.|++.......+ +.. ..+...+.
T Consensus 24 ~~~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~ 103 (447)
T PLN02463 24 SKSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKD 103 (447)
T ss_pred ccccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCcc
Confidence 3445689999999999999999999999998887654322111 100 00000000
Q ss_pred -------cCcccccccChhhhhcCCeEEEeCceEEEeccccccEEEecCCcEEecCEEEEccCCCCC
Q psy2951 93 -------IKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPR 152 (1466)
Q Consensus 93 -------~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~~~~~d~lviAtG~~~~ 152 (1466)
....++...+.+.+.+.+++++.........+.+...|+++++.++.+|.||.|+|....
T Consensus 104 ~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 104 LDRPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred ccCcceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence 000011112223334568888654322222223345677888889999999999998654
|
|
| >COG0029 NadB Aspartate oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.2e-05 Score=92.22 Aligned_cols=55 Identities=24% Similarity=0.335 Sum_probs=40.0
Q ss_pred ccEEECCCCCcCCCCEEEecccccccCccCCCCc-ceeccHHHHHHHHHHHHHHhcCCC
Q psy2951 298 KAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKN-ASIGHYQLAQYHGRIAALNMVEKK 355 (1466)
Q Consensus 298 g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~g~~-~~~~~~~~A~~~g~~aa~~i~~~~ 355 (1466)
|+|.||.+.||+.|++||+|.|+..-. +|.+ .-..+--++.--|..+|++|.+..
T Consensus 342 GGI~vD~~GrTsi~gLYAiGEvA~TGl---HGANRLASNSLLE~vV~g~~aA~~i~~~~ 397 (518)
T COG0029 342 GGIAVDANGRTSIPGLYAIGEVACTGL---HGANRLASNSLLECLVFGKRAAEDIAGRL 397 (518)
T ss_pred ccEEECCCCcccCcccEEeeeeccccc---ccchhhhhhhHHHHHHHHHHHHHHhhccc
Confidence 789999999999999999999987532 2322 222233345677888888888764
|
|
| >TIGR00551 nadB L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.1e-05 Score=99.65 Aligned_cols=55 Identities=24% Similarity=0.295 Sum_probs=39.0
Q ss_pred CccEEECCCCCcCCCCEEEecccccccCccCCCCcc-eeccHHHHHHHHHHHHHHhcCC
Q psy2951 297 QKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNA-SIGHYQLAQYHGRIAALNMVEK 354 (1466)
Q Consensus 297 ~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~g~~~-~~~~~~~A~~~g~~aa~~i~~~ 354 (1466)
.|.|.+|...||++||+||+|+|+... .+ |... --.....+.-.|++|+++++..
T Consensus 333 ~GGi~vd~~~~t~I~GLyAaGE~a~~g--~h-Ganrl~g~sl~~~~v~G~~Ag~~aa~~ 388 (488)
T TIGR00551 333 CGGISVDDHGRTTVPGLYAIGEVACTG--LH-GANRLASNSLLECLVFGWSAAEDISRR 388 (488)
T ss_pred cCCEEECCCCcccCCCEEECccccccc--cC-cccccchhHHHHHHHHHHHHHHHHHhh
Confidence 478999999999999999999997421 11 2211 1123455778899999998753
|
L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA. |
| >TIGR01416 Rieske_proteo ubiquinol-cytochrome c reductase, iron-sulfur subunit | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.2e-06 Score=89.40 Aligned_cols=67 Identities=22% Similarity=0.424 Sum_probs=55.2
Q ss_pred hhhhhhhhcCCCCCCCcccc-ceeec-CCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEE
Q psy2951 974 AERNIYAVGTKCSHYGAPLV-KGSLG-DGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVV 1041 (1466)
Q Consensus 974 ~~g~~~a~~~~C~h~g~~l~-~g~~~-~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~ 1041 (1466)
.+++++++...|||.||... .+... .+.+.|||||+.||+ +|.+...|+..+|+.|++++..+..+.
T Consensus 104 ~~~~~~a~~~~CtH~Gc~~~~~~~~~~~~~~~CPcHgs~Fd~-~G~~~~gpa~~~L~~~~~~~~~~~~~~ 172 (174)
T TIGR01416 104 GKPEWLVVIGICTHLGCIPTYGPEEGDKGGFFCPCHGSHYDT-AGRVRKGPAPLNLPVPPYKFLSDTTIL 172 (174)
T ss_pred cCCcEEEEEeccCCCCCccccccCCCCCCEEEeCCCCCEECC-CCcEecCCCCCCCCCCCEEEcCCCEEE
Confidence 35789999999999998654 33333 468999999999997 599999999999999999996666554
|
Most members of this family have a recognizable twin-arginine translocation (tat) signal sequence (DeltaPh-dependent translocation in chloroplast) for transport across the membrane with the 2Fe-2S group already bound. These signal sequences include a motif resembling RRxFLK before the transmembrane helix. |
| >PLN02463 lycopene beta cyclase | Back alignment and domain information |
|---|
Probab=98.19 E-value=6.8e-06 Score=98.70 Aligned_cols=112 Identities=21% Similarity=0.280 Sum_probs=71.2
Q ss_pred cCCCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCC-----------ccchhcc--------------
Q psy2951 590 LSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV-----------KLSKQLD-------------- 644 (1466)
Q Consensus 590 ~~~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~-----------~~~~~~~-------------- 644 (1466)
++....+||+||||||||+++|..|++.|.+ |.++|+.+...+... .+...+.
T Consensus 23 ~~~~~~~DVvIVGaGpAGLalA~~La~~Gl~--V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~ 100 (447)
T PLN02463 23 PSKSRVVDLVVVGGGPAGLAVAQQVSEAGLS--VCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGK 100 (447)
T ss_pred CccccCceEEEECCCHHHHHHHHHHHHCCCe--EEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCC
Confidence 3455568999999999999999999999988 777777543221110 0000000
Q ss_pred ----------cCcccccccCHhHhhhCCcEEEEceEEEEecccc-ccEEEccCCCEEecCEEEEcCCCCCC
Q psy2951 645 ----------IKADSILLRTEEFYKDNDIHVIKGKKIISDSELN-EKKIKLQDGTSIDFTKIYLATGSSPR 704 (1466)
Q Consensus 645 ----------~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~-~~~v~~~~~~~~~~d~lviAtG~~~~ 704 (1466)
.+...+...+.+.+.+.|++++.. +|.++...+ ...|++++|.++.+|.||.|+|....
T Consensus 101 ~~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~~-~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 101 KKDLDRPYGRVNRKKLKSKMLERCIANGVQFHQA-KVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred CccccCcceeEEHHHHHHHHHHHHhhcCCEEEee-EEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence 011111122233345578998754 588773222 34577788889999999999997654
|
|
| >PRK07804 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.5e-05 Score=97.34 Aligned_cols=35 Identities=26% Similarity=0.442 Sum_probs=30.7
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 630 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~ 630 (1466)
...||||||+|.|||+||..+++.|.+ |+++++..
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~--VilleK~~ 49 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRR--VLVVTKAA 49 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCe--EEEEEccC
Confidence 468999999999999999999999987 77777754
|
|
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=7.8e-06 Score=98.24 Aligned_cols=109 Identities=16% Similarity=0.219 Sum_probs=69.3
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCC---------------ccc----------h---hcc-
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV---------------KLS----------K---QLD- 644 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~---------------~~~----------~---~~~- 644 (1466)
.+++|+||||||||+++|..|++.|++ |+++|+.+....... .+. . ...
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~--v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~ 80 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIA--VDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDP 80 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCC--EEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECC
Confidence 368999999999999999999999998 566665432110000 000 0 000
Q ss_pred -----------------------cCcccccccCHhHhhhCCcEEEEceEEEEecc-ccccEEEccCCCEEecCEEEEcCC
Q psy2951 645 -----------------------IKADSILLRTEEFYKDNDIHVIKGKKIISDSE-LNEKKIKLQDGTSIDFTKIYLATG 700 (1466)
Q Consensus 645 -----------------------~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~-~~~~~v~~~~~~~~~~d~lviAtG 700 (1466)
.....+...+.+.+.+.|++++.+++|..+.. .+...+.+.++.++.+|.||.|+|
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG 160 (375)
T PRK06847 81 DGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADG 160 (375)
T ss_pred CCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcC
Confidence 00011112223344557999999998988832 223456667888999999999999
Q ss_pred CCCC
Q psy2951 701 SSPR 704 (1466)
Q Consensus 701 ~~~~ 704 (1466)
....
T Consensus 161 ~~s~ 164 (375)
T PRK06847 161 LYSK 164 (375)
T ss_pred CCcc
Confidence 6543
|
|
| >PRK09231 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.4e-05 Score=96.79 Aligned_cols=56 Identities=18% Similarity=0.219 Sum_probs=38.5
Q ss_pred CCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhcc
Q psy2951 848 GQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVE 905 (1466)
Q Consensus 848 ~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~ 905 (1466)
-.|.|.+|.+.+|+.|++||+|+|+.... ++..+..-.....|+..|++|+++++.
T Consensus 357 t~GGi~vd~~~~t~i~GLyAaGe~~~~g~--hGanrlggnsl~~a~v~Gr~Ag~~aa~ 412 (582)
T PRK09231 357 TMGGIETDQNCETRIKGLFAVGECSSVGL--HGANRLGSNSLAELVVFGRVAGEQAAE 412 (582)
T ss_pred eCCCEEECCCCccccCCEEeccccccccc--CCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999964211 111111112335677888888888764
|
|
| >PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.1e-06 Score=105.25 Aligned_cols=67 Identities=21% Similarity=0.287 Sum_probs=52.4
Q ss_pred cHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccCccccccCCc
Q psy2951 1246 GKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGV 1315 (1466)
Q Consensus 1246 ~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~~~~~~~~gl 1315 (1466)
+..+...|.+.+++.|++++.+++|+++. .+++++..|.+.+|+ +.+|.||+|+|.... .++...++
T Consensus 146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~-~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~-~l~~~~~~ 212 (358)
T PF01266_consen 146 PRRLIQALAAEAQRAGVEIRTGTEVTSID-VDGGRVTGVRTSDGE-IRADRVVLAAGAWSP-QLLPLLGL 212 (358)
T ss_dssp HHHHHHHHHHHHHHTT-EEEESEEEEEEE-EETTEEEEEEETTEE-EEECEEEE--GGGHH-HHHHTTTT
T ss_pred ccchhhhhHHHHHHhhhhccccccccchh-hcccccccccccccc-cccceeEecccccce-eeeecccc
Confidence 46788889999999999999999999998 456677779999997 999999999997554 35555543
|
1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A .... |
| >TIGR02032 GG-red-SF geranylgeranyl reductase family | Back alignment and domain information |
|---|
Probab=98.12 E-value=7.1e-06 Score=95.02 Aligned_cols=106 Identities=18% Similarity=0.290 Sum_probs=67.1
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCcc--c----h--------------------------hc
Q psy2951 596 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKL--S----K--------------------------QL 643 (1466)
Q Consensus 596 ~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~--~----~--------------------------~~ 643 (1466)
+||+||||||||+++|+.|++.|.+ |+++|+........... . . ..
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~--v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLR--VLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEI 78 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCe--EEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEe
Confidence 5899999999999999999999987 77777765432110000 0 0 00
Q ss_pred --------ccCcccccccCHhHhhhCCcEEEEceEEEEeccc-cccEEEcc-CCCEEecCEEEEcCCCCC
Q psy2951 644 --------DIKADSILLRTEEFYKDNDIHVIKGKKIISDSEL-NEKKIKLQ-DGTSIDFTKIYLATGSSP 703 (1466)
Q Consensus 644 --------~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~-~~~~v~~~-~~~~~~~d~lviAtG~~~ 703 (1466)
..+...+...+.+.+.+.|++++.+++++.+... +...+.+. ++.++++|+||+|+|...
T Consensus 79 ~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 79 PIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred ccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcch
Confidence 0111122223344456679999999989887222 22234333 345799999999999643
|
This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. |
| >COG4638 HcaE Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.1e-06 Score=101.83 Aligned_cols=89 Identities=25% Similarity=0.477 Sum_probs=75.5
Q ss_pred eEEEEEeecCchhhhhhhhhhhhhhcCCCCCCCccccceeecC-CEEEcCCCCceeecCCCccccCC------CCC----
Q psy2951 957 KVLAILTVGMDPLAAQFAERNIYAVGTKCSHYGAPLVKGSLGD-GRVRCPWHGACFNIATGDIEDFP------GMD---- 1025 (1466)
Q Consensus 957 ~i~g~~~~g~~~~~~~~~~g~~~a~~~~C~h~g~~l~~g~~~~-~~~~cp~h~~~f~~~~g~~~~~p------~~~---- 1025 (1466)
+.++..+.+...++.+..+|++.|+.+.|+|.+++|+.|.+.+ +.+.||+|||+|+ ..|+|...| ..+
T Consensus 41 ~~~~~~i~g~~lvi~R~~dg~~~al~d~C~HRga~Ls~g~~~~~~~l~CpyHgW~y~-~~G~~~~ip~~~~~~~~~~~~~ 119 (367)
T COG4638 41 DPLTVRIGGEPLVVVRDKDGQVHALADVCPHRGARLSEGRVGGKGRLTCPYHGWTYD-LDGRLRGVPARGYPLDFDKSEH 119 (367)
T ss_pred CceeEEEcCeEEEEEECCCCCEEEEeccCCCCCchhccccCCCCceEecCCCceEEC-CCCcEecCCccccCCCCCHhhC
Confidence 6666777777777888889999999999999999999999998 8999999999999 899988776 333
Q ss_pred CCCeEEEEEEcCCEEEEEcchh
Q psy2951 1026 SLPCYKVTIQNDDSVVVQARKD 1047 (1466)
Q Consensus 1026 ~l~~~~v~~~~~~~~~~~~~~~ 1047 (1466)
.|..|++++ ..|-+|+.....
T Consensus 120 ~l~~~~~~~-~~G~Iwi~~~~~ 140 (367)
T COG4638 120 GLKRYPVEE-RYGFIWIWLGDP 140 (367)
T ss_pred CccccceEE-EccEEEEecCCC
Confidence 488899998 778888865443
|
|
| >TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.8e-05 Score=96.03 Aligned_cols=55 Identities=22% Similarity=0.209 Sum_probs=37.9
Q ss_pred CCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhcc
Q psy2951 849 QKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVE 905 (1466)
Q Consensus 849 ~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~ 905 (1466)
.|.|.+|...+|++|++||+|+|+..... +.....-.....|...|++|+++++.
T Consensus 357 ~GGi~~d~~~~t~i~GLyAaGe~a~~G~h--Ganrl~g~sl~~~~v~G~~ag~~aa~ 411 (580)
T TIGR01176 357 MGGIETDINCETRIKGLFAVGECASVGLH--GANRLGSNSLAELVVFGRRAGEAAAE 411 (580)
T ss_pred CCCeeECcCcccccCCeEeeecccccCcC--CCccccchhHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999642211 11111112335778888888888764
|
The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model. |
| >PRK06175 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.7e-05 Score=93.00 Aligned_cols=54 Identities=11% Similarity=0.078 Sum_probs=37.9
Q ss_pred CCcEEeCCCCCCCCCCeEEeccccc-cCCcccCCceeeeccHHHHHHHHHHHHHHhcc
Q psy2951 849 QKAVVVNEYLETNVPGVYAGGDIAY-APLHSFYNKNASIGHYQLAQYHGRIAALNMVE 905 (1466)
Q Consensus 849 ~G~i~vd~~~~t~~~~iya~GD~~~-~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~ 905 (1466)
.|.|.+|...||+.|++||+|.++. ... +..+..-.....+..-|++|++++..
T Consensus 331 ~GGi~vd~~~~t~i~gLYAaGE~a~~g~h---G~nrl~gnsl~~~lvfGr~Ag~~a~~ 385 (433)
T PRK06175 331 MGGIKVDLNSKTSMKNLYAFGEVSCTGVH---GANRLASNSLLEGLVFSKRGAEKINS 385 (433)
T ss_pred cCCEEECCCccccCCCeEecccccccCCC---ccccchhHHHHHHHHHHHHHHHHHHH
Confidence 4779999999999999999999964 221 11111112335778889999998854
|
|
| >PF14759 Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LXD_A 2YVG_A 2GR1_A 2GQW_A 2GR3_A 2YVF_A 1F3P_A 2GR0_A 2GR2_A | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.8e-05 Score=70.77 Aligned_cols=69 Identities=28% Similarity=0.527 Sum_probs=61.4
Q ss_pred cccccccceeeEEEEeecCCceEEEecccCCCeEEEEEEcCCEEEEEEEECCCHHHHHHHHHHhcCCCcc
Q psy2951 363 FFWTMLFGVGFRFAGYAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTVGMDPLAAQFAEQVLEFPYSS 432 (1466)
Q Consensus 363 ~~~s~~~~~~~~~~G~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~i~~~~~~ 432 (1466)
||||+|++..++++|.+...++.+..|+++...|..++..+++++|+..+|. +.....++.+|+.+..+
T Consensus 1 ~FWSdQ~~~~iq~~G~~~~~~~~v~rg~~~~~~~~~~y~~~g~lva~~~vn~-~~~~~~~rrli~~~~~~ 69 (85)
T PF14759_consen 1 WFWSDQYGVRIQIAGLPGGADEVVVRGDPESGKFVAFYLRDGRLVAAVSVNR-PRDLRAARRLIAAGARV 69 (85)
T ss_dssp EEEEEETTEEEEEEE-STTSSEEEEEEETTTTEEEEEEEETTEEEEEEEES--HHHHHHHHHHHHTT-B-
T ss_pred CeecccCCCeEEEEECCCCCCEEEEEccCCCCcEEEEEEcCCEEEEEEecCC-HHHHHHHHHHHHCCCCc
Confidence 7999999999999999999999999999999999999999999999999995 88888888999888765
|
... |
| >COG0029 NadB Aspartate oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.09 E-value=3.3e-05 Score=88.66 Aligned_cols=56 Identities=23% Similarity=0.336 Sum_probs=42.2
Q ss_pred CcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCC
Q psy2951 850 KAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK 907 (1466)
Q Consensus 850 G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~ 907 (1466)
|.|.||.+.||+.|++||+|.|+..... +..+...-+.-+++--|+.+|++|.+..
T Consensus 342 GGI~vD~~GrTsi~gLYAiGEvA~TGlH--GANRLASNSLLE~vV~g~~aA~~i~~~~ 397 (518)
T COG0029 342 GGIAVDANGRTSIPGLYAIGEVACTGLH--GANRLASNSLLECLVFGKRAAEDIAGRL 397 (518)
T ss_pred ccEEECCCCcccCcccEEeeeecccccc--cchhhhhhhHHHHHHHHHHHHHHhhccc
Confidence 7899999999999999999999865332 2223333344577888999999998764
|
|
| >TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup | Back alignment and domain information |
|---|
Probab=98.08 E-value=6.7e-05 Score=94.76 Aligned_cols=55 Identities=20% Similarity=0.160 Sum_probs=37.5
Q ss_pred CCcEEeCCCCC----CCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhcc
Q psy2951 849 QKAVVVNEYLE----TNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVE 905 (1466)
Q Consensus 849 ~G~i~vd~~~~----t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~ 905 (1466)
-|.|.+|...| |++|++||+|+|+.... ++..+..-.....|+..|++|+++++.
T Consensus 342 ~GGi~id~~~~v~~~t~I~GLyAaGe~a~~g~--hGa~rl~g~sl~~a~v~G~~Ag~~aa~ 400 (566)
T TIGR01812 342 MGGIPTDYTGRVICETIVKGLFAAGECACVSV--HGANRLGGNSLLELVVFGRIAGEAAAE 400 (566)
T ss_pred CCCeEECcCcccccCcccCCeeecccccccCc--CcccccchhhHHHHHHHHHHHHHHHHH
Confidence 47789998888 99999999999975211 111111112345788889999888764
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase. |
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.2e-05 Score=96.50 Aligned_cols=106 Identities=16% Similarity=0.238 Sum_probs=70.1
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCC---------------CCchhh-------------ccC
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV---------------KLSKQL-------------DIK 1117 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~---------------~l~~~~-------------~~~ 1117 (1466)
+.+|+|||||+||+++|..|++.|. +|+|+|+.+...-.-. -+...+ ...
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~--~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~ 81 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGI--AVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPD 81 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCC--CEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCC
Confidence 5689999999999999999999998 9999998864210000 000000 000
Q ss_pred cc---cc--------------cc-------cChhhhccCCcEEEcCCeEEEeecCCCC--eEEecCCcEEecCeEEEecC
Q psy2951 1118 AD---SI--------------LL-------RTEEFYKDNDIHVIKGKKIISDSELNEK--KIKLQDGTSIDFTKIYLATG 1171 (1466)
Q Consensus 1118 ~~---~~--------------~~-------~~~~~~~~~~v~~~~~~~v~~i~d~~~~--~v~~~~g~~~~yd~lvlAtG 1171 (1466)
.. .+ .+ ...+.+.+.+++++.+++|+.+ +.... .|.+.+|.++.+|.||.|+|
T Consensus 82 g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i-~~~~~~~~v~~~~g~~~~ad~vI~AdG 160 (375)
T PRK06847 82 GTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAI-EQDDDGVTVTFSDGTTGRYDLVVGADG 160 (375)
T ss_pred CCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEE-EEcCCEEEEEEcCCCEEEcCEEEECcC
Confidence 00 00 00 0011233458999999999999 65433 56677898999999999999
Q ss_pred CCC
Q psy2951 1172 SSP 1174 (1466)
Q Consensus 1172 ~~~ 1174 (1466)
...
T Consensus 161 ~~s 163 (375)
T PRK06847 161 LYS 163 (375)
T ss_pred CCc
Confidence 754
|
|
| >PRK10157 putative oxidoreductase FixC; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.3e-05 Score=96.98 Aligned_cols=108 Identities=20% Similarity=0.235 Sum_probs=67.7
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCC-------c-cc---h------hcc--c---------
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV-------K-LS---K------QLD--I--------- 645 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~-------~-~~---~------~~~--~--------- 645 (1466)
..+||+||||||||++||+.|+++|++ |+++|+......... . +. . .+. .
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~--V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQ--VLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMT 81 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCe--EEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEc
Confidence 358999999999999999999999998 777777644321100 0 00 0 000 0
Q ss_pred -------C-----------------cccccccCHhHhhhCCcEEEEceEEEEeccccccE-EEccCCCEEecCEEEEcCC
Q psy2951 646 -------K-----------------ADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKK-IKLQDGTSIDFTKIYLATG 700 (1466)
Q Consensus 646 -------~-----------------~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~-v~~~~~~~~~~d~lviAtG 700 (1466)
+ ...+-..+.+..++.|++++.+++|+.+...+... ....++.++.+|.||+|+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G 161 (428)
T PRK10157 82 EKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADG 161 (428)
T ss_pred CCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeC
Confidence 0 00000012233445799999999898873223332 2334677899999999999
Q ss_pred CCC
Q psy2951 701 SSP 703 (1466)
Q Consensus 701 ~~~ 703 (1466)
...
T Consensus 162 ~~s 164 (428)
T PRK10157 162 VNS 164 (428)
T ss_pred CCH
Confidence 643
|
|
| >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.7e-05 Score=82.88 Aligned_cols=166 Identities=23% Similarity=0.253 Sum_probs=107.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcc-------------------------------------cccH
Q psy2951 1205 ESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQE-------------------------------------SLGK 1247 (1466)
Q Consensus 1205 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~-------------------------------------~~~~ 1247 (1466)
..+|+|||+|+.|+-+|..|++.|.+|.++++...+-.. .-+.
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~ 104 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSV 104 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHH
Confidence 357999999999999999999999999999987543110 0013
Q ss_pred HHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcC-----------CCCeeecCEEEEeeccccCcc--cccc--
Q psy2951 1248 EVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLD-----------NGTTIPADLVIVGIGTVLNTN--YLDG-- 1312 (1466)
Q Consensus 1248 ~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~-----------~g~~i~~D~vv~a~G~~p~~~--~~~~-- 1312 (1466)
++...|.+..++.|++++.++.++++...+++++..+... +..++.|+.||.|+|...... +.+.
T Consensus 105 ~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l~~~~~ 184 (257)
T PRK04176 105 EAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVLARKGP 184 (257)
T ss_pred HHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHHHHHcC
Confidence 4556677778889999999999999873333466666543 224789999999999644322 2121
Q ss_pred -CCceeeCCCe--------EEeCCCccccCCCEEEecccccCCCccCCCceeeee-cHHHHHHHHHHHHHHhcC
Q psy2951 1313 -KGVELNGQKA--------VVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIG-HYQLAQYHGRIAALNMVE 1376 (1466)
Q Consensus 1313 -~gl~~~~~G~--------i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~-~~~~A~~qa~~aa~~i~g 1376 (1466)
.+..+...+. .+|+.+-+. +|++|++|=.+..-+ |.+ |+. .|..-...|+.||+-++.
T Consensus 185 ~~~~~~~g~~~~~~~~~e~~v~~~t~~~-~~g~~~~gm~~~~~~----~~~-rmg~~fg~m~~sg~~~a~~~~~ 252 (257)
T PRK04176 185 ELGIEVPGEKSMWAERGEKLVVENTGEV-YPGLYVAGMAANAVH----GLP-RMGPIFGGMLLSGKKVAELILE 252 (257)
T ss_pred CcccccCCccccccCchHHHHHhcCCeE-cCCEEEeehhhhhhc----CCC-ccCchhHhHHHhHHHHHHHHHH
Confidence 1111111111 122222222 799999997655322 222 232 355567788999887764
|
|
| >COG0579 Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=8.2e-05 Score=86.77 Aligned_cols=68 Identities=22% Similarity=0.344 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCCeEEEEcCCCcE-EeccEEEEeeccccCccccccCCce
Q psy2951 224 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTT-IPADLVIVGIGTVLNTNYLDGKGVE 293 (1466)
Q Consensus 224 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~~~g~~-i~~D~Vi~a~G~~p~~~~l~~~gl~ 293 (1466)
.++...+.+.+.++|+++++++.|+.|+..+++ +..+.+.+|++ +.|+.||.|.|.-. ..+++..|+.
T Consensus 153 ~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~~~~~g~~~~~ak~Vin~AGl~A-d~la~~~g~~ 221 (429)
T COG0579 153 GELTRALAEEAQANGVELRLNTEVTGIEKQSDG-VFVLNTSNGEETLEAKFVINAAGLYA-DPLAQMAGIP 221 (429)
T ss_pred HHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEEEecCCcEEEEeeEEEECCchhH-HHHHHHhCCC
Confidence 456677788888899999999999999987654 66778888876 99999999999653 3355555544
|
|
| >TIGR00292 thiazole biosynthesis enzyme | Back alignment and domain information |
|---|
Probab=98.04 E-value=6.6e-05 Score=83.03 Aligned_cols=166 Identities=19% Similarity=0.163 Sum_probs=108.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcc-------------------c------------------ccH
Q psy2951 1205 ESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQE-------------------S------------------LGK 1247 (1466)
Q Consensus 1205 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~-------------------~------------------~~~ 1247 (1466)
.-+|+|||+|..|+-+|..|++.|.+|.++++...+-.. . ...
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~ 100 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSA 100 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHH
Confidence 457999999999999999999999999999987543100 0 013
Q ss_pred HHHHHHHHHHHhCCcEEEcCceEEEEEecCCC--cEEEEEcCC-----------CCeeecCEEEEeeccccC-ccccc-c
Q psy2951 1248 EVGERITKLFESKGVKFVMKANVSSFEKNEKN--DVTAANLDN-----------GTTIPADLVIVGIGTVLN-TNYLD-G 1312 (1466)
Q Consensus 1248 ~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g--~~~~v~l~~-----------g~~i~~D~vv~a~G~~p~-~~~~~-~ 1312 (1466)
++...|.+...+.|++++.++.++++.. +++ ++.+|.+.. ..++++++||.|+|.... ..++. .
T Consensus 101 el~~~L~~~a~e~GV~I~~~t~V~dli~-~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l~~~ 179 (254)
T TIGR00292 101 EFISTLASKALQAGAKIFNGTSVEDLIT-RDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVCAKK 179 (254)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEE-eCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHHHHH
Confidence 4556677778889999999999999873 333 577776642 247899999999996543 33332 2
Q ss_pred CCceeeC-----CCeEEeC--CC---cccc--CCCEEEecccccCCCccCCCceeee-ecHHHHHHHHHHHHHHhcC
Q psy2951 1313 KGVELNG-----QKAVVVN--EY---LETN--VPGVYAGGDIAYAPLHSFYNKNASI-GHYQLAQYHGRIAALNMVE 1376 (1466)
Q Consensus 1313 ~gl~~~~-----~G~i~vd--~~---~~t~--~~~v~a~GD~a~~p~~~~~~~~~~~-~~~~~A~~qa~~aa~~i~g 1376 (1466)
.++.... .+....+ +. -.|. +|++|++|=.+.--. |.+ |+ ..|..-...|+.||+-++.
T Consensus 180 ~~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~~~g~~~~gm~~~~~~----~~~-rmgp~fg~m~~sg~~~a~~~~~ 251 (254)
T TIGR00292 180 IVLEDQVPKLGGEKSMWAEVAEVAIHENTREVVPNLYVAGMAVAAVH----GLP-RMGPIFGGMLLSGKHVAEQILE 251 (254)
T ss_pred cCcccCCcccCCchhhhhhhhHHHHHhccCcccCCEEEechhhhhhc----CCC-CcCchHHHHHHhhHHHHHHHHH
Confidence 2222211 1111111 11 1233 899999996554221 222 33 2455667788999887764
|
This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis. |
| >PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.5e-05 Score=98.21 Aligned_cols=36 Identities=14% Similarity=0.348 Sum_probs=30.2
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 630 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~ 630 (1466)
..||||||||.|||+||+.+++.|....|+++++..
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~ 38 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTH 38 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccC
Confidence 469999999999999999999886434588888863
|
|
| >PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.03 E-value=4e-05 Score=95.90 Aligned_cols=55 Identities=25% Similarity=0.320 Sum_probs=38.6
Q ss_pred CCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccC
Q psy2951 849 QKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEK 906 (1466)
Q Consensus 849 ~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~ 906 (1466)
.|.|.+|...||++|++||+|+++....- .....-.....|...|++|+++++..
T Consensus 348 ~GGi~vd~~~~t~IpGLyAaGE~~gg~hG---~~rlgG~sl~~a~v~Gr~Ag~~aa~~ 402 (543)
T PRK06263 348 MGGIRINEDCETNIPGLFACGEVAGGVHG---ANRLGGNALADTQVFGAIAGKSAAKN 402 (543)
T ss_pred cCCEEECCCCcccCCCeEeccccccCCCC---CCccchhhhhhhHHHHHHHHHHHHHH
Confidence 47799999999999999999998753221 11111112356888899999988643
|
|
| >COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.2e-05 Score=96.52 Aligned_cols=111 Identities=14% Similarity=0.150 Sum_probs=68.4
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCC-Cccc----hhcc------------------------
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR-VKLS----KQLD------------------------ 92 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~~-~~~~----~~~~------------------------ 92 (1466)
.++||+||||||||++||+.|++.|.+|.|+|...+...+... ..+. +.+.
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~ 81 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVA 81 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceE
Confidence 3689999999999999999999999888887765543221110 0000 0000
Q ss_pred cC----------cccccccChhhhhcCCeEEEeCceEEEeccccccEE-Ee-cCCcEEecCEEEEccCCCCC
Q psy2951 93 IK----------ADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKI-KL-QDGTSIDFTKIYLATGSSPR 152 (1466)
Q Consensus 93 ~~----------~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v-~~-~~~~~~~~d~lviAtG~~~~ 152 (1466)
.. ...+..++.+..++.|.+++.++.+......+...+ .+ .++.+++++++|.|+|.+..
T Consensus 82 ~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~ 153 (396)
T COG0644 82 IEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSA 153 (396)
T ss_pred EecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcchH
Confidence 00 001111234445567999999988776443332322 22 23358999999999997643
|
|
| >PRK08275 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=4.7e-05 Score=95.42 Aligned_cols=46 Identities=43% Similarity=0.481 Sum_probs=34.7
Q ss_pred ccEEECCCCCcCCCCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcC
Q psy2951 298 KAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVE 353 (1466)
Q Consensus 298 g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~ 353 (1466)
|+|.||+.++|++|++||+|||+.... .....+...|+.|+.+++.
T Consensus 357 Ggi~~d~~~~t~i~gl~a~Ge~~~~~~----------~~~~~~~~~G~~a~~~~~~ 402 (554)
T PRK08275 357 SGVWVNEKAETTVPGLYAAGDMASVPH----------NYMLGAFTYGWFAGENAAE 402 (554)
T ss_pred CcEEECCCCccCCCCEEECcccCCchh----------HHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999864221 2234567788888877653
|
|
| >PRK06175 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=6.3e-05 Score=90.99 Aligned_cols=54 Identities=11% Similarity=0.094 Sum_probs=38.5
Q ss_pred CCeEEeCCCccccCCCEEEeccccc-CCCccCCCceeeeecHHHHHHHHHHHHHHhcC
Q psy2951 1320 QKAVVVNEYLETNVPGVYAGGDIAY-APLHSFYNKNASIGHYQLAQYHGRIAALNMVE 1376 (1466)
Q Consensus 1320 ~G~i~vd~~~~t~~~~v~a~GD~a~-~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g 1376 (1466)
.|+|.+|...||+.|++||+|.++. ..+. ..+..-.+-..+.--|++||+++..
T Consensus 331 ~GGi~vd~~~~t~i~gLYAaGE~a~~g~hG---~nrl~gnsl~~~lvfGr~Ag~~a~~ 385 (433)
T PRK06175 331 MGGIKVDLNSKTSMKNLYAFGEVSCTGVHG---ANRLASNSLLEGLVFSKRGAEKINS 385 (433)
T ss_pred cCCEEECCCccccCCCeEecccccccCCCc---cccchhHHHHHHHHHHHHHHHHHHH
Confidence 5679999999999999999999874 2211 1111112346678889999999864
|
|
| >TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase | Back alignment and domain information |
|---|
Probab=98.01 E-value=5.2e-06 Score=101.88 Aligned_cols=54 Identities=13% Similarity=0.247 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCCeEEEEcCCCcEEeccEEEEeecc
Q psy2951 223 GKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGT 280 (1466)
Q Consensus 223 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~ 280 (1466)
+..+...+.+.+++.|+++++++.|.+++.. ....+.+.+| ++.+|.||+|+|.
T Consensus 182 P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~---~~~~v~t~~g-~v~A~~VV~Atga 235 (460)
T TIGR03329 182 PGLLVRGLRRVALELGVEIHENTPMTGLEEG---QPAVVRTPDG-QVTADKVVLALNA 235 (460)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEeeC---CceEEEeCCc-EEECCEEEEcccc
Confidence 3567788888889999999999999999753 2234666666 6899999999984
|
This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW. |
| >PRK12842 putative succinate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.01 E-value=5e-06 Score=104.60 Aligned_cols=102 Identities=17% Similarity=0.226 Sum_probs=76.2
Q ss_pred CCCeEEEEcCCH--HHHHHHHHHhcCCCeEEEEcCCCcCCcc-------------cccHHHHHHHHHHHHhCCcEEEcCc
Q psy2951 1204 PESNVVVIGSSF--IGMEAAAFCASKVKSVTVVGRGAVPFQE-------------SLGKEVGERITKLFESKGVKFVMKA 1268 (1466)
Q Consensus 1204 ~~~~vvVvG~g~--~g~e~a~~l~~~g~~v~vv~~~~~~~~~-------------~~~~~~~~~l~~~~~~~gv~~~~~~ 1268 (1466)
..+++.|+|+++ ++.+++..+...+.+++++.+..+.+.. .-+..+.+.|.+.+++.|+++++++
T Consensus 156 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~~Gv~i~~~~ 235 (574)
T PRK12842 156 PLKTITFIGMMFNSSNADLKHFFNATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALDLGIPILTGT 235 (574)
T ss_pred CcccccccceecccchHHHHHHHhhccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHhCCCEEEeCC
Confidence 467888999988 8999999998888888776544332211 1135577778888899999999999
Q ss_pred eEEEEEecCCCcEEEEEcCC--CC-eeecC-EEEEeeccccC
Q psy2951 1269 NVSSFEKNEKNDVTAANLDN--GT-TIPAD-LVIVGIGTVLN 1306 (1466)
Q Consensus 1269 ~v~~i~~~~~g~~~~v~l~~--g~-~i~~D-~vv~a~G~~p~ 1306 (1466)
.++++. .+++++..|...+ ++ ++.++ .||+|+|..++
T Consensus 236 ~v~~l~-~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 276 (574)
T PRK12842 236 PARELL-TEGGRVVGARVIDAGGERRITARRGVVLACGGFSH 276 (574)
T ss_pred EEEEEE-eeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCccc
Confidence 999998 4567787776644 33 46786 79999997663
|
|
| >COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.7e-05 Score=95.34 Aligned_cols=109 Identities=13% Similarity=0.171 Sum_probs=69.4
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCc---cch----hccc---------------------
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK---LSK----QLDI--------------------- 645 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~---~~~----~~~~--------------------- 645 (1466)
.++||+||||||||++||+.|++.|.+ |+++|+.+..++..+. +.. .+..
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~--VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~ 79 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLD--VLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEK 79 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCe--EEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCc
Confidence 368999999999999999999999966 8888886544322211 000 0000
Q ss_pred -------------CcccccccCHhHhhhCCcEEEEceEEEEeccccccE-EE-ccCCCEEecCEEEEcCCCCCC
Q psy2951 646 -------------KADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKK-IK-LQDGTSIDFTKIYLATGSSPR 704 (1466)
Q Consensus 646 -------------~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~-v~-~~~~~~~~~d~lviAtG~~~~ 704 (1466)
+...+-.++.+...+.|++++.++.+..+...+... +. ..++.+++++++|.|+|....
T Consensus 80 ~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~ 153 (396)
T COG0644 80 VAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSA 153 (396)
T ss_pred eEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcchH
Confidence 001111122344556799999999998883223222 22 223358999999999996543
|
|
| >PRK09231 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=98.00 E-value=5.7e-05 Score=94.81 Aligned_cols=54 Identities=20% Similarity=0.302 Sum_probs=38.7
Q ss_pred CCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeee--cHHHHHHHHHHHHHHhcC
Q psy2951 1319 GQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIG--HYQLAQYHGRIAALNMVE 1376 (1466)
Q Consensus 1319 ~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~--~~~~A~~qa~~aa~~i~g 1376 (1466)
..|+|.+|.+++|+.|++||+|+|+.... .|. -|+. +-..|...|++|+++++.
T Consensus 357 t~GGi~vd~~~~t~i~GLyAaGe~~~~g~---hGa-nrlggnsl~~a~v~Gr~Ag~~aa~ 412 (582)
T PRK09231 357 TMGGIETDQNCETRIKGLFAVGECSSVGL---HGA-NRLGSNSLAELVVFGRVAGEQAAE 412 (582)
T ss_pred eCCCEEECCCCccccCCEEeccccccccc---CCC-CCcchhHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999975221 011 1121 345677889999988875
|
|
| >COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.5e-05 Score=97.98 Aligned_cols=56 Identities=20% Similarity=0.228 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeecc
Q psy2951 1247 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGT 1303 (1466)
Q Consensus 1247 ~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~ 1303 (1466)
..+.+.|.+.+++.|++|+++++|++|. .++|+.+.+...+|+.+++|.||.....
T Consensus 224 ~al~~aL~~~~~~~Gg~I~~~~~V~~I~-v~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 224 GALVDALAELAREHGGEIRTGAEVSQIL-VEGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHcCCEEECCCceEEEE-EeCCcceEEeccccceeccceeEecCch
Confidence 5688899999999999999999999998 6677777888888878899999997665
|
|
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=5.5e-05 Score=91.95 Aligned_cols=57 Identities=19% Similarity=0.248 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCC-----CeeecCEEEEeecccc
Q psy2951 1247 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG-----TTIPADLVIVGIGTVL 1305 (1466)
Q Consensus 1247 ~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g-----~~i~~D~vv~a~G~~p 1305 (1466)
..+...|.+.+++.|++++.+++|++++ ..++.+ .+.+.++ .++.+|.||+|+|...
T Consensus 197 ~~~~~~l~~~a~~~G~~i~~~~~V~~i~-~~~~~~-~v~~~~~~~~~~~~i~a~~vV~a~G~~s 258 (410)
T PRK12409 197 HKFTTGLAAACARLGVQFRYGQEVTSIK-TDGGGV-VLTVQPSAEHPSRTLEFDGVVVCAGVGS 258 (410)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEE-EeCCEE-EEEEEcCCCCccceEecCEEEECCCcCh
Confidence 3556677888999999999999999997 333333 3433332 3789999999999653
|
|
| >PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.99 E-value=5.6e-05 Score=94.61 Aligned_cols=54 Identities=30% Similarity=0.377 Sum_probs=38.7
Q ss_pred CccEEECCCCCcCCCCEEEecccccccCccCCCCcceec-cHHHHHHHHHHHHHHhcCC
Q psy2951 297 QKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIG-HYQLAQYHGRIAALNMVEK 354 (1466)
Q Consensus 297 ~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~-~~~~A~~~g~~aa~~i~~~ 354 (1466)
.|.|.+|+..||++||+||+|++++.. +|.....+ ....+...|++|+++++..
T Consensus 348 ~GGi~vd~~~~t~IpGLyAaGE~~gg~----hG~~rlgG~sl~~a~v~Gr~Ag~~aa~~ 402 (543)
T PRK06263 348 MGGIRINEDCETNIPGLFACGEVAGGV----HGANRLGGNALADTQVFGAIAGKSAAKN 402 (543)
T ss_pred cCCEEECCCCcccCCCeEeccccccCC----CCCCccchhhhhhhHHHHHHHHHHHHHH
Confidence 378999999999999999999987532 12211111 2345778999999998753
|
|
| >PRK10157 putative oxidoreductase FixC; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.8e-05 Score=95.86 Aligned_cols=36 Identities=19% Similarity=0.211 Sum_probs=32.1
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCC
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE 77 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~ 77 (1466)
.++||+||||||||++||+.|++.|++|.|+|..+.
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~ 39 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNS 39 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCC
Confidence 469999999999999999999999999998876543
|
|
| >PRK09077 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00033 Score=87.34 Aligned_cols=54 Identities=24% Similarity=0.329 Sum_probs=38.9
Q ss_pred CccEEECCCCCcCCCCEEEecccccccCccCCCCcceec--cHHHHHHHHHHHHHHhcCC
Q psy2951 297 QKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIG--HYQLAQYHGRIAALNMVEK 354 (1466)
Q Consensus 297 ~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~--~~~~A~~~g~~aa~~i~~~ 354 (1466)
.|.|.+|...+|++||+||+|+|+..- . +|.. +.+ ....+.-.|++|+++++..
T Consensus 353 ~GGi~vd~~~~t~I~GLyAaGE~a~~g--~-hGan-rl~gnsl~~~~vfG~~Ag~~aa~~ 408 (536)
T PRK09077 353 CGGVMVDLHGRTDLDGLYAIGEVSYTG--L-HGAN-RMASNSLLECLVYGRSAAEDILSR 408 (536)
T ss_pred cCCeeECCCCccccCCEEecccccccc--c-CCCc-cchhhhHHHHHHHHHHHHHHHHHh
Confidence 478999999999999999999997421 1 1222 222 3445678899999998753
|
|
| >COG0579 Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.6e-05 Score=90.88 Aligned_cols=201 Identities=19% Similarity=0.234 Sum_probs=114.7
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccch-----hcccCcccccccC--------HhHhhh
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSK-----QLDIKADSILLRT--------EEFYKD 660 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~--------~~~~~~ 660 (1466)
.++||+|||||.-|+++|+.|++++....|+++|++..+......-.. .+..++.++..++ .++.++
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq 81 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQ 81 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999976679999998655433322111 0111111111111 122222
Q ss_pred CCcEEEEceEEEEeccccccEEEccCCCEEecCEEEEcCCCCCC--cCCCC-----CCCCcEEEecCHHHHHhhcccCCC
Q psy2951 661 NDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPR--TISQA-----DGVNKVFYLRTVEDANNIAPHITP 733 (1466)
Q Consensus 661 ~gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~--~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~ 733 (1466)
+++. -+...++++|+|-... ...+. .|+. ....-+.+...++...+..
T Consensus 82 ~~~~------------------------f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~-~~~~ld~~~i~~~eP~l~~ 136 (429)
T COG0579 82 LGIP------------------------FINCGKLSVATGEEEVERLEKLYERGKANGVF-DLEILDKEEIKELEPLLNE 136 (429)
T ss_pred hCCc------------------------ccccCeEEEEEChHHHHHHHHHHHHHhhCCCc-ceeecCHHHHHhhCccccc
Confidence 2211 1234678888884321 11110 0111 1122233343333322211
Q ss_pred CCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEE
Q psy2951 734 ESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAA 813 (1466)
Q Consensus 734 ~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v 813 (1466)
+ ++|+ . .-...+++ -..++...+.+.+.++|+++.++++|+.|+...++ +..+
T Consensus 137 ~----~~aa---------l---~~p~~giV----------~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~ 189 (429)
T COG0579 137 G----AVAA---------L---LVPSGGIV----------DPGELTRALAEEAQANGVELRLNTEVTGIEKQSDG-VFVL 189 (429)
T ss_pred c----ceee---------E---EcCCCceE----------cHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEE
Confidence 1 0000 0 00111111 12345677788888899999999999999965554 6677
Q ss_pred ECCCCcE-EecCEEEEccccccCccccccCCceee
Q psy2951 814 NLDNGTT-IPADLVIVGIGTVLNTNYLDGKGVELN 847 (1466)
Q Consensus 814 ~~~~g~~-i~~D~vi~a~G~~p~~~~~~~~gl~~~ 847 (1466)
.+.+|++ ++|+.||.|.|.... .+++..|+..+
T Consensus 190 ~~~~g~~~~~ak~Vin~AGl~Ad-~la~~~g~~~~ 223 (429)
T COG0579 190 NTSNGEETLEAKFVINAAGLYAD-PLAQMAGIPED 223 (429)
T ss_pred EecCCcEEEEeeEEEECCchhHH-HHHHHhCCCcc
Confidence 8888877 999999999998654 56776666543
|
|
| >PRK10015 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.3e-05 Score=94.78 Aligned_cols=107 Identities=17% Similarity=0.210 Sum_probs=66.4
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCC---------------ccc--hhc-------------
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV---------------KLS--KQL------------- 643 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~---------------~~~--~~~------------- 643 (1466)
..+||+||||||||++||+.|++.|++ |+++|+.+.++.... .+. ..+
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~--VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~ 81 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLD--VLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLT 81 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCe--EEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEe
Confidence 358999999999999999999999998 777877654321100 000 000
Q ss_pred -----ccC--c--------ccc-cc------cCHhHhhhCCcEEEEceEEEEeccccccE-EEccCCCEEecCEEEEcCC
Q psy2951 644 -----DIK--A--------DSI-LL------RTEEFYKDNDIHVIKGKKIISDSELNEKK-IKLQDGTSIDFTKIYLATG 700 (1466)
Q Consensus 644 -----~~~--~--------~~~-~~------~~~~~~~~~gv~~~~~~~v~~i~~~~~~~-v~~~~~~~~~~d~lviAtG 700 (1466)
..+ . ... .. .+.+..++.|++++.+++|+.+...+... ....++.++.+|.||+|+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG 161 (429)
T PRK10015 82 EESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADG 161 (429)
T ss_pred CCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccC
Confidence 000 0 000 00 12233456799999998898873322222 2223456799999999999
Q ss_pred CC
Q psy2951 701 SS 702 (1466)
Q Consensus 701 ~~ 702 (1466)
..
T Consensus 162 ~~ 163 (429)
T PRK10015 162 VN 163 (429)
T ss_pred cc
Confidence 64
|
|
| >PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.7e-05 Score=96.67 Aligned_cols=34 Identities=18% Similarity=0.322 Sum_probs=28.1
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcC--CCCcEEEEc
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNG--FTGKLYFIT 75 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g--~~v~i~~~~ 75 (1466)
.++||||||||.||++||+.+++.| .+|.|++..
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~ 37 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKT 37 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEecc
Confidence 4579999999999999999999875 566666543
|
|
| >PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.5e-05 Score=94.59 Aligned_cols=206 Identities=19% Similarity=0.214 Sum_probs=98.7
Q ss_pred cEEEECCchHHHHHHHHHHhcCCC-CcEEEEcCCCCCCCCCCC-CchhhccCcccccccChhhhccCCcEEEcCCeEEEe
Q psy2951 1068 TFIVVGGGPSGATCVETLRQNGFT-GKLYFITDENFLPYDRVK-LSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISD 1145 (1466)
Q Consensus 1068 ~vvIVG~G~aGl~aA~~L~~~g~~-~~i~li~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i 1145 (1466)
+|||||||+||..+|..|++.+.. .+|+|||++..+.+.-.- +...+......+-+...+++.+.+..+.++.+...-
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~~~~vGe~~~p~~~~~~~~lgi~e~~~~~~~~~~~k~g~~f~~w 80 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIPRIGVGESTLPSLRPFLRRLGIDEADFMRACDATFKLGIRFVNW 80 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS---SSEEE--THHHHCHHHHT--HHHHCHHCT-EEESEEEEESS
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCCCccccchHHHHHHHHHcCCChHHHHHHhCCeEeccEEeeec
Confidence 599999999999999999999843 599999998765433211 000011122233344445666666666666533222
Q ss_pred ecCCCCeEEecCCcEEecCeEEEecCCCCCcCCCCCCCCcEEEecCHHHH-HhhhcccCCCCeEEEEcCCHHHHHHHHHH
Q psy2951 1146 SELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDA-NNIAPHITPESNVVVIGSSFIGMEAAAFC 1224 (1466)
Q Consensus 1146 ~d~~~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~~v~~~~~~~~~-~~l~~~~~~~~~vvVvG~g~~g~e~a~~l 1224 (1466)
.. .+..+.+ .-|.. .. ..+++. +... .+.+.. + .-..+.-..+...+
T Consensus 81 ---~~------~~~~~~~-----~f~~~-----~~-~~~~~~----~~~~wl~~~~~---~-----~~~~~~~~~~~~~~ 128 (454)
T PF04820_consen 81 ---GE------RGESYFH-----PFGSY-----GP-PIDGVD----FHHYWLRLRAA---G-----FDGPFSDFSLSAAL 128 (454)
T ss_dssp ---SS------CCSEEEE-----ESS--------T-EETTEE----HHHHHHHHHHT---T-----CCSHHHHHHHCHHH
T ss_pred ---CC------CCCceEe-----ecccc-----CC-CCCCcc----HHHHHHHHhhc---C-----CCCCHHHHHHHHHH
Confidence 11 1111110 00110 00 001111 1111 111110 0 00111112222222
Q ss_pred hcCCCeEEEE--cCCCcCCccccc-HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEee
Q psy2951 1225 ASKVKSVTVV--GRGAVPFQESLG-KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 1301 (1466)
Q Consensus 1225 ~~~g~~v~vv--~~~~~~~~~~~~-~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~ 1301 (1466)
.+.+.-...- ........-.++ ..+.+.|.+..+++||+++.++ |+.+...++|.+..|++++|+++.+|++|=|+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~ayhlDR~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDAS 207 (454)
T PF04820_consen 129 AKQGRFAPPPEDFLSPFNYAYHLDRAKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDAS 207 (454)
T ss_dssp HHHTTBTSB-TTSTBTSS-EEEEEHHHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-S
T ss_pred HHccCCCCCcccccCCCCeeEEEeHHHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECC
Confidence 3222211110 011111111222 5677889999999999999875 66665456788899999999999999999999
Q ss_pred ccccC
Q psy2951 1302 GTVLN 1306 (1466)
Q Consensus 1302 G~~p~ 1306 (1466)
|....
T Consensus 208 G~~s~ 212 (454)
T PF04820_consen 208 GRRSL 212 (454)
T ss_dssp GGG-C
T ss_pred Cccch
Confidence 97543
|
This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A .... |
| >PRK08275 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=8.8e-05 Score=92.98 Aligned_cols=38 Identities=16% Similarity=0.392 Sum_probs=31.1
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENF 631 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~ 631 (1466)
...||||||||.|||+||..+++.|....|+++++...
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~ 45 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV 45 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 34799999999999999999999854345888888653
|
|
| >COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.1e-05 Score=79.74 Aligned_cols=39 Identities=26% Similarity=0.369 Sum_probs=34.1
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY 634 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~ 634 (1466)
...||+||||||+||+||++|+++|.+ |.++|+..++++
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~k--V~i~E~~ls~GG 67 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGLK--VAIFERKLSFGG 67 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCce--EEEEEeecccCC
Confidence 457999999999999999999999988 888888866554
|
|
| >PRK13977 myosin-cross-reactive antigen; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=6.8e-05 Score=90.24 Aligned_cols=90 Identities=19% Similarity=0.245 Sum_probs=57.1
Q ss_pred HhHHHHHHHHhhCCCEEEEEeecC---cccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEec-CC--CCeEEEEcC-
Q psy2951 192 FIGMEAAAFCASKVKSVTVVGRGA---VPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKN-EK--NDVTAANLD- 264 (1466)
Q Consensus 192 ~~g~e~A~~l~~~g~~Vtlv~~~~---~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~--~~~~~v~~~- 264 (1466)
.++.|+...+.+.-.++.-+.... ...... ...+..-+.+.++++||+++++++|+++..+ ++ ++++.+...
T Consensus 192 hSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynq-yeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~ 270 (576)
T PRK13977 192 HSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQ-YESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTR 270 (576)
T ss_pred hHHHHHHHHHHHHHHhhccCCccccccCCCCCc-hhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEe
Confidence 478888888876522221111110 000111 2677788899999999999999999998764 22 456666553
Q ss_pred CC--c---EEeccEEEEeecccc
Q psy2951 265 NG--T---TIPADLVIVGIGTVL 282 (1466)
Q Consensus 265 ~g--~---~i~~D~Vi~a~G~~p 282 (1466)
+| + ..+.|.||+++|.--
T Consensus 271 ~~~~~~I~l~~~DlVivTnGs~t 293 (576)
T PRK13977 271 NGKEETIDLTEDDLVFVTNGSIT 293 (576)
T ss_pred CCceeEEEecCCCEEEEeCCcCc
Confidence 22 2 346899999998643
|
|
| >PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases | Back alignment and domain information |
|---|
Probab=97.95 E-value=3.6e-05 Score=90.94 Aligned_cols=97 Identities=26% Similarity=0.324 Sum_probs=67.9
Q ss_pred eEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCC---------------------------------------------
Q psy2951 1207 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF--------------------------------------------- 1241 (1466)
Q Consensus 1207 ~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~--------------------------------------------- 1241 (1466)
+|+|||+|.+|+-+|..+++.|.+|.++++.+.+.
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~d 81 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPED 81 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HHH
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHHH
Confidence 58999999999999999999999999999986551
Q ss_pred -----------------ccccc-----HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEE
Q psy2951 1242 -----------------QESLG-----KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIV 1299 (1466)
Q Consensus 1242 -----------------~~~~~-----~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~ 1299 (1466)
.+.+| ..+.+.|.+.+++.||+++++++|.++. .+++....|.++++.++.||.||+
T Consensus 82 ~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~-~~~~~~f~v~~~~~~~~~a~~vIL 160 (409)
T PF03486_consen 82 LIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIE-KKEDGVFGVKTKNGGEYEADAVIL 160 (409)
T ss_dssp HHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEE-EETTEEEEEEETTTEEEEESEEEE
T ss_pred HHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeee-ecCCceeEeeccCcccccCCEEEE
Confidence 00011 4566778888999999999999999998 445566778887888999999999
Q ss_pred eeccc
Q psy2951 1300 GIGTV 1304 (1466)
Q Consensus 1300 a~G~~ 1304 (1466)
|+|-.
T Consensus 161 AtGG~ 165 (409)
T PF03486_consen 161 ATGGK 165 (409)
T ss_dssp ----S
T ss_pred ecCCC
Confidence 99954
|
; PDB: 2I0Z_A 3V76_A 2GQF_A. |
| >COG0723 QcrA Rieske Fe-S protein [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.95 E-value=8.2e-06 Score=84.94 Aligned_cols=65 Identities=23% Similarity=0.474 Sum_probs=54.5
Q ss_pred hhhhhcCCCCCCCccccc-eeecCCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEE
Q psy2951 977 NIYAVGTKCSHYGAPLVK-GSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVV 1042 (1466)
Q Consensus 977 ~~~a~~~~C~h~g~~l~~-g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~ 1042 (1466)
+++|+...|+|.||...+ +.-..+.+.|||||++|+ ..|.++..|+..+|+.++++.+.+..+.+
T Consensus 100 ~~~a~~~iCtHlGC~~~~~~~~~~~~~~CPCHGS~yd-~~g~vv~GPA~~~L~~~~~~~~~d~~~~~ 165 (177)
T COG0723 100 EIVAYSAICTHLGCTVPWNNAGAEGGFFCPCHGSRYD-PDGGVVKGPAPRPLPIPPLEYDSDKLYLI 165 (177)
T ss_pred cEEEEeeeccCCCCccCcccCCCCCeEEccCCCCeEc-CCCCeeCCCCCCCcCCceEEEeCCceEEE
Confidence 566999999999999887 445569999999999999 56668888999999999999966655544
|
|
| >TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit | Back alignment and domain information |
|---|
Probab=97.95 E-value=9.8e-05 Score=92.41 Aligned_cols=54 Identities=24% Similarity=0.255 Sum_probs=38.3
Q ss_pred CCeEEeCCCccccCCCEEEecccccCCCccCCCce-eeeecHHHHHHHHHHHHHHhcC
Q psy2951 1320 QKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKN-ASIGHYQLAQYHGRIAALNMVE 1376 (1466)
Q Consensus 1320 ~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~-~~~~~~~~A~~qa~~aa~~i~g 1376 (1466)
.|+|.+|..++|+.|++||+|+|+..... |.. .--.+-..+.-.|+.|+++++.
T Consensus 357 ~GGi~~d~~~~t~i~GLyAaGe~a~~G~h---Ganrl~g~sl~~~~v~G~~ag~~aa~ 411 (580)
T TIGR01176 357 MGGIETDINCETRIKGLFAVGECASVGLH---GANRLGSNSLAELVVFGRRAGEAAAE 411 (580)
T ss_pred CCCeeECcCcccccCCeEeeecccccCcC---CCccccchhHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999752211 111 1112346678888999888875
|
The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model. |
| >TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00016 Score=91.32 Aligned_cols=54 Identities=22% Similarity=0.164 Sum_probs=38.1
Q ss_pred CccEEECCCCC----cCCCCEEEecccccccCccCCCCccee-ccHHHHHHHHHHHHHHhcC
Q psy2951 297 QKAVVVNEYLE----TNVPGVYAGGDIAYAPLHSFYNKNASI-GHYQLAQYHGRIAALNMVE 353 (1466)
Q Consensus 297 ~g~i~vd~~~~----t~~~~iya~GD~~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~~ 353 (1466)
.|.|.+|...| |++||+||+|+|+... . +|..... .....|+-.|++|+++++.
T Consensus 342 ~GGi~id~~~~v~~~t~I~GLyAaGe~a~~g--~-hGa~rl~g~sl~~a~v~G~~Ag~~aa~ 400 (566)
T TIGR01812 342 MGGIPTDYTGRVICETIVKGLFAAGECACVS--V-HGANRLGGNSLLELVVFGRIAGEAAAE 400 (566)
T ss_pred CCCeEECcCcccccCcccCCeeecccccccC--c-CcccccchhhHHHHHHHHHHHHHHHHH
Confidence 47889999998 9999999999997521 1 2222111 2345577889999998864
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase. |
| >TIGR02734 crtI_fam phytoene desaturase | Back alignment and domain information |
|---|
Probab=97.94 E-value=8.7e-06 Score=101.64 Aligned_cols=56 Identities=27% Similarity=0.345 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeecc
Q psy2951 1247 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGT 1303 (1466)
Q Consensus 1247 ~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~ 1303 (1466)
..+.+.|.+.+++.|+++++++.|++|. .+++++..|++.+|+++.+|.||++++.
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~-~~~~~~~~V~~~~g~~~~ad~VI~a~~~ 274 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIE-TEGGRATAVHLADGERLDADAVVSNADL 274 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEE-eeCCEEEEEEECCCCEEECCEEEECCcH
Confidence 4677888899999999999999999998 4556777899999999999999998775
|
Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis. |
| >PRK06834 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=3.7e-05 Score=94.48 Aligned_cols=110 Identities=13% Similarity=0.268 Sum_probs=68.9
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCC--CCC--------------Cccchh------------cc-
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP--YDR--------------VKLSKQ------------LD- 644 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~--~~~--------------~~~~~~------------~~- 644 (1466)
+..+|+||||||+|+++|..|+++|.+ |+++|+.+... ..+ ..+... +.
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~--v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~ 79 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGVD--VAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAA 79 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCCCc--EEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeee
Confidence 358999999999999999999999988 66666543211 000 000000 00
Q ss_pred --cCcccc---------------cccCHhHhhhCCcEEEEceEEEEeccc-cccEEEccCCCEEecCEEEEcCCCCCCc
Q psy2951 645 --IKADSI---------------LLRTEEFYKDNDIHVIKGKKIISDSEL-NEKKIKLQDGTSIDFTKIYLATGSSPRT 705 (1466)
Q Consensus 645 --~~~~~~---------------~~~~~~~~~~~gv~~~~~~~v~~i~~~-~~~~v~~~~~~~~~~d~lviAtG~~~~~ 705 (1466)
.+...+ ...+.+.+++.|++++.+++++.+... +...+++.++.++.+|+||.|.|.....
T Consensus 80 ~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~v 158 (488)
T PRK06834 80 TRLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLV 158 (488)
T ss_pred EecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCc
Confidence 000000 011123345669999999999888322 2345555677789999999999976544
|
|
| >PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.94 E-value=7.1e-05 Score=93.74 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=30.7
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEc
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFIT 75 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~ 75 (1466)
..+||||||+|.||++||..+++.|.+|.|++..
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~ 37 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKV 37 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEcc
Confidence 4589999999999999999999999999888754
|
|
| >PRK13977 myosin-cross-reactive antigen; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0001 Score=88.74 Aligned_cols=88 Identities=19% Similarity=0.267 Sum_probs=57.7
Q ss_pred hHHHHHHHHHhccCC------eEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEec-CC--CceEEEE
Q psy2951 744 FIGMEAAAFCASKVK------SVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKN-EK--NDVTAAN 814 (1466)
Q Consensus 744 ~~g~e~A~~l~~~g~------~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~-~~--~~~~~v~ 814 (1466)
.++.|+..++.+.-. +..-+.+... ..-..+..-+.+.|+++||+|+++++|+++..+ ++ +.+..+.
T Consensus 192 hSA~E~rry~~rf~~~~~~l~~~s~l~ft~y----nqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~ 267 (576)
T PRK13977 192 HSALEMRRYMHRFIHHIGGLPDLSGLKFTKY----NQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIH 267 (576)
T ss_pred hHHHHHHHHHHHHHHhhccCCccccccCCCC----CchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEE
Confidence 478888888865511 2222222221 112566778899999999999999999999853 22 4566666
Q ss_pred CC-CCc-----EEecCEEEEccccccC
Q psy2951 815 LD-NGT-----TIPADLVIVGIGTVLN 835 (1466)
Q Consensus 815 ~~-~g~-----~i~~D~vi~a~G~~p~ 835 (1466)
.. +|. ..+.|.||+++|.-..
T Consensus 268 ~~~~~~~~~I~l~~~DlVivTnGs~t~ 294 (576)
T PRK13977 268 LTRNGKEETIDLTEDDLVFVTNGSITE 294 (576)
T ss_pred EEeCCceeEEEecCCCEEEEeCCcCcc
Confidence 64 222 3468999999986543
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=7.2e-05 Score=98.88 Aligned_cols=35 Identities=23% Similarity=0.298 Sum_probs=30.7
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcC
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITD 76 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~ 76 (1466)
.++||||||||.||++||+.+++.|.+|.|++...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~ 46 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAH 46 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 46899999999999999999999999988876543
|
|
| >TIGR02032 GG-red-SF geranylgeranyl reductase family | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.1e-05 Score=91.12 Aligned_cols=104 Identities=21% Similarity=0.413 Sum_probs=66.4
Q ss_pred CcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCC--CCc----hhh-----------------ccCcc--cc
Q psy2951 1067 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV--KLS----KQL-----------------DIKAD--SI 1121 (1466)
Q Consensus 1067 ~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~--~l~----~~~-----------------~~~~~--~~ 1121 (1466)
.+|+|||||+||+++|..|++.|. +|+|||+.+....... .+. +.+ ....+ ..
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~--~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGL--RVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEI 78 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC--eEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEe
Confidence 379999999999999999999998 9999999875332100 000 000 00000 00
Q ss_pred --------ccc-------ChhhhccCCcEEEcCCeEEEeecCCCC--eEEec-CCcEEecCeEEEecCCC
Q psy2951 1122 --------LLR-------TEEFYKDNDIHVIKGKKIISDSELNEK--KIKLQ-DGTSIDFTKIYLATGSS 1173 (1466)
Q Consensus 1122 --------~~~-------~~~~~~~~~v~~~~~~~v~~i~d~~~~--~v~~~-~g~~~~yd~lvlAtG~~ 1173 (1466)
.+. ..+...+.+++++.+++|+.+ ..... .+.+. ++.++.+|.+|+|+|..
T Consensus 79 ~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~-~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~ 147 (295)
T TIGR02032 79 PIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDV-EIHDDRVVVIVRGGEGTVTAKIVIGADGSR 147 (295)
T ss_pred ccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeE-EEeCCEEEEEEcCccEEEEeCEEEECCCcc
Confidence 000 012334468999999999987 54333 34434 34579999999999974
|
This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. |
| >PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.93 E-value=8.8e-05 Score=93.49 Aligned_cols=34 Identities=15% Similarity=0.359 Sum_probs=29.5
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcC---CCccEEEEcCCC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNG---FTGKLYFITDEN 630 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g---~~~~v~~~~~~~ 630 (1466)
..||||||||.|||+||..+++.| .+ |+++++..
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~--V~lleK~~ 41 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLS--VAVVSKTQ 41 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCCc--EEEEEccc
Confidence 579999999999999999999998 55 77777753
|
|
| >PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.93 E-value=5.3e-05 Score=90.59 Aligned_cols=67 Identities=21% Similarity=0.290 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCccccccCCc
Q psy2951 775 GKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGV 844 (1466)
Q Consensus 775 ~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl 844 (1466)
+..+...+.+.+++.|++++.+++|+++.. +++.+..|.+.+|+ +.+|.||+|+|.... .+++..+.
T Consensus 146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~-~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~-~l~~~~~~ 212 (358)
T PF01266_consen 146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDV-DGGRVTGVRTSDGE-IRADRVVLAAGAWSP-QLLPLLGL 212 (358)
T ss_dssp HHHHHHHHHHHHHHTT-EEEESEEEEEEEE-ETTEEEEEEETTEE-EEECEEEE--GGGHH-HHHHTTTT
T ss_pred ccchhhhhHHHHHHhhhhccccccccchhh-cccccccccccccc-cccceeEecccccce-eeeecccc
Confidence 467778888889999999999999999984 35556669999997 999999999998544 35555443
|
1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A .... |
| >PRK06854 adenylylsulfate reductase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=97.92 E-value=5.2e-05 Score=95.53 Aligned_cols=34 Identities=15% Similarity=0.428 Sum_probs=29.9
Q ss_pred CCeEEEEcCchHHHHHHHHHHHc--CCCccEEEEcCCC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQN--GFTGKLYFITDEN 630 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~--g~~~~v~~~~~~~ 630 (1466)
..||||||||.|||+||..+++. |.+ |+++++..
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~--V~lieK~~ 46 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLK--VLIVEKAN 46 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCe--EEEEECCC
Confidence 47999999999999999999998 877 77788764
|
|
| >PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.1e-05 Score=100.91 Aligned_cols=107 Identities=15% Similarity=0.159 Sum_probs=75.5
Q ss_pred CCCcEEEECCChHHHHHHHH-------HhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEec
Q psy2951 733 PESNVVVIGSSFIGMEAAAF-------CASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKN 805 (1466)
Q Consensus 733 ~~~~vvVvG~G~~g~e~A~~-------l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~ 805 (1466)
.++..+++|++.++++.+.. +.+.+.+|++....+... ..++..+...+.+.+++.|+++++++.++++..
T Consensus 159 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~- 236 (557)
T PRK07843 159 VPLNMVVMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNL-LGMGQALAAGLRIGLQRAGVPVLLNTPLTDLYV- 236 (557)
T ss_pred ccccccccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCc-ccCcHHHHHHHHHHHHcCCCEEEeCCEEEEEEE-
Confidence 36778999999999998864 556666777654443322 235667778888889999999999999999984
Q ss_pred CCCceEEEECC-CCc--EEecC-EEEEccc-cccCcccccc
Q psy2951 806 EKNDVTAANLD-NGT--TIPAD-LVIVGIG-TVLNTNYLDG 841 (1466)
Q Consensus 806 ~~~~~~~v~~~-~g~--~i~~D-~vi~a~G-~~p~~~~~~~ 841 (1466)
+++++..+... +++ .+.++ .||+|+| +.+|.++++.
T Consensus 237 ~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~~~ 277 (557)
T PRK07843 237 EDGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMRAK 277 (557)
T ss_pred eCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHHHH
Confidence 35566665543 343 57785 6888665 5566555544
|
|
| >PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00029 Score=88.72 Aligned_cols=32 Identities=13% Similarity=0.199 Sum_probs=27.3
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEE
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFI 74 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~ 74 (1466)
..+||||||||.||++||+.+++. .+|.|++.
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK 35 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTK 35 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHhC-CCEEEEeC
Confidence 357999999999999999999976 77777654
|
|
| >PRK10015 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.2e-05 Score=93.56 Aligned_cols=36 Identities=25% Similarity=0.308 Sum_probs=32.0
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCC
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE 77 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~ 77 (1466)
.++||+||||||||++||+.|++.|++|.|+|..+.
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~ 39 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDS 39 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 468999999999999999999999999888875543
|
|
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00014 Score=87.17 Aligned_cols=57 Identities=23% Similarity=0.317 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhCC-cEEEcCceEEEEEecCCCcEEEEEcC-CCCeeecCEEEEeeccccC
Q psy2951 1248 EVGERITKLFESKG-VKFVMKANVSSFEKNEKNDVTAANLD-NGTTIPADLVIVGIGTVLN 1306 (1466)
Q Consensus 1248 ~~~~~l~~~~~~~g-v~~~~~~~v~~i~~~~~g~~~~v~l~-~g~~i~~D~vv~a~G~~p~ 1306 (1466)
.+.+.|.+.+++.+ |+++.+++|+.++ .++..+. ++++ ||+++.||+||-|=|....
T Consensus 105 ~l~~~L~~~~~~~~~v~~~~~~~v~~~~-~~~~~v~-v~l~~dG~~~~a~llVgADG~~S~ 163 (387)
T COG0654 105 DLLNALLEAARALPNVTLRFGAEVEAVE-QDGDGVT-VTLSFDGETLDADLLVGADGANSA 163 (387)
T ss_pred HHHHHHHHHHhhCCCcEEEcCceEEEEE-EcCCceE-EEEcCCCcEEecCEEEECCCCchH
Confidence 46667777777766 9999999999998 3444454 8888 9999999999999996554
|
|
| >PRK11728 hydroxyglutarate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00015 Score=87.48 Aligned_cols=65 Identities=18% Similarity=0.312 Sum_probs=49.4
Q ss_pred cHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccCccccccCC
Q psy2951 1246 GKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKG 1314 (1466)
Q Consensus 1246 ~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~~~~~~~~g 1314 (1466)
+..+.+.|.+.++++|++++.+++|.+++ ..++. ..|.+.+| ++.+|.||+|+|.... .+++..|
T Consensus 148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~-~~~~~-~~V~~~~g-~i~ad~vV~A~G~~s~-~l~~~~g 212 (393)
T PRK11728 148 YRAVAEAMAELIQARGGEIRLGAEVTALD-EHANG-VVVRTTQG-EYEARTLINCAGLMSD-RLAKMAG 212 (393)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEE-ecCCe-EEEEECCC-EEEeCEEEECCCcchH-HHHHHhC
Confidence 36778888889999999999999999997 33333 35777776 7999999999997653 3444333
|
|
| >COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00017 Score=81.93 Aligned_cols=84 Identities=20% Similarity=0.208 Sum_probs=67.8
Q ss_pred HHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEcc
Q psy2951 751 AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 830 (1466)
Q Consensus 751 ~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~ 830 (1466)
...+..+....++.-..+.+....-+.+.+.+.+.+++.|++|+++++|.+++. +++.+..+.+++|.++++|.||+|+
T Consensus 148 ~e~~aa~a~~eil~~~~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~-~~~~~~~v~~~~g~~i~~~~vvlA~ 226 (486)
T COG2509 148 IEFRAAGAGEEILPIYQRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEI-EDNEVLGVKLTKGEEIEADYVVLAP 226 (486)
T ss_pred HHHHHhCCCceeeeccccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEe-cCCceEEEEccCCcEEecCEEEEcc
Confidence 344555666666665555555566688889999999999999999999999984 4555778999999999999999999
Q ss_pred ccccC
Q psy2951 831 GTVLN 835 (1466)
Q Consensus 831 G~~p~ 835 (1466)
|+...
T Consensus 227 Grsg~ 231 (486)
T COG2509 227 GRSGR 231 (486)
T ss_pred CcchH
Confidence 99876
|
|
| >PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00011 Score=92.72 Aligned_cols=54 Identities=22% Similarity=0.209 Sum_probs=37.7
Q ss_pred CccEEECCCCCcC------CCCEEEecccccccCccCCCCcceec-cHHHHHHHHHHHHHHhcC
Q psy2951 297 QKAVVVNEYLETN------VPGVYAGGDIAYAPLHSFYNKNASIG-HYQLAQYHGRIAALNMVE 353 (1466)
Q Consensus 297 ~g~i~vd~~~~t~------~~~iya~GD~~~~~~~~~~g~~~~~~-~~~~A~~~g~~aa~~i~~ 353 (1466)
.|.|.+|...+|+ +||+||+|+|+..- ++|.....+ ....+.-.|++|+++++.
T Consensus 352 ~GGi~vd~~~~t~~~~g~~I~GLyAaGE~a~~g---~hGanrlggnsl~~~~v~Gr~Ag~~aa~ 412 (577)
T PRK06069 352 MGGIHTDVYGRVLTADGEWVRGLWAAGEAAAVS---VHGANRLGSNSTAECLVWGRIAGEQAAE 412 (577)
T ss_pred CCCceECCCCcCcCCCCCEeCCeEecccccccc---ccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 4788999999998 99999999997521 122221111 234567889999988764
|
|
| >PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.6e-05 Score=89.71 Aligned_cols=101 Identities=25% Similarity=0.411 Sum_probs=59.6
Q ss_pred eEEEEcCchHHHHHHHHHHHcCCCccEEEEcCC-C------CCC-------------------------------CCCCc
Q psy2951 597 TFIVVGGGPSGATCVETLRQNGFTGKLYFITDE-N------FLP-------------------------------YDRVK 638 (1466)
Q Consensus 597 ~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~-~------~~~-------------------------------~~~~~ 638 (1466)
||+|||||.||..||+.+++.|.+ |.++... . |.| +....
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~--V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN 78 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAK--VLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLN 78 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT----EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEES
T ss_pred CEEEECCCHHHHHHHHHHHHCCCC--EEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccc
Confidence 799999999999999999999998 5555322 1 111 00000
Q ss_pred cchhc-------ccCcccccccCHhHhhh-CCcEEEEceEEEEeccccc---cEEEccCCCEEecCEEEEcCCC
Q psy2951 639 LSKQL-------DIKADSILLRTEEFYKD-NDIHVIKGKKIISDSELNE---KKIKLQDGTSIDFTKIYLATGS 701 (1466)
Q Consensus 639 ~~~~~-------~~~~~~~~~~~~~~~~~-~gv~~~~~~~v~~i~~~~~---~~v~~~~~~~~~~d~lviAtG~ 701 (1466)
.++.. ..+...+...+.+.+++ .+++++.++ |..+ ..++ .-|.+.+|..+.+|.+|||||.
T Consensus 79 ~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~-V~~l-~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 79 RSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGE-VTDL-IVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp TTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES--EEEE-EECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred ccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcc-cceE-EecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 00000 01122222233344555 589998765 8888 3332 2367788999999999999997
|
Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A. |
| >PLN02697 lycopene epsilon cyclase | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.6e-05 Score=93.95 Aligned_cols=109 Identities=14% Similarity=0.223 Sum_probs=66.3
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCC---------Cccchhcc------------------
Q psy2951 592 SGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR---------VKLSKQLD------------------ 644 (1466)
Q Consensus 592 ~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~---------~~~~~~~~------------------ 644 (1466)
....+||+||||||||+++|..|++.|++ |+++++....+-.. ..+.....
T Consensus 105 ~~~~~DVvIVGaGPAGLalA~~Lak~Gl~--V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~ 182 (529)
T PLN02697 105 GDGTLDLVVIGCGPAGLALAAESAKLGLN--VGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMI 182 (529)
T ss_pred ccCcccEEEECcCHHHHHHHHHHHhCCCc--EEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeec
Confidence 34568999999999999999999999988 77777642211010 00000000
Q ss_pred ------cCcccccccCHhHhhhCCcEEEEceEEEEecccccc-E-EEccCCCEEecCEEEEcCCCCC
Q psy2951 645 ------IKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEK-K-IKLQDGTSIDFTKIYLATGSSP 703 (1466)
Q Consensus 645 ------~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~-~-v~~~~~~~~~~d~lviAtG~~~ 703 (1466)
.+...+...+.+.+.+.|+++ .+++|+.+....+. . +.+.++.++.++.||.|+|...
T Consensus 183 ~~~Yg~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 183 GRAYGRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred cCcccEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 000111112223345568998 45568887322222 2 3456788999999999999654
|
|
| >PRK07395 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=9.2e-05 Score=92.09 Aligned_cols=54 Identities=19% Similarity=0.150 Sum_probs=35.9
Q ss_pred CCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhc
Q psy2951 849 QKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMV 904 (1466)
Q Consensus 849 ~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~ 904 (1466)
-|.|.+|.+.+|+.|++||+|+|+.... ++..+..--....+..-|+.++..+.
T Consensus 347 ~GGi~vd~~~~t~I~GLyAaGE~a~~G~--hGanRL~gnsl~e~lvfG~~a~~~~~ 400 (553)
T PRK07395 347 MGGVVTDLNNQTSIPGLYAVGETASTGV--HGANRLASNSLLECLVFAAQLAQLEL 400 (553)
T ss_pred CCCeeECCCCcccCCCEEECccccccCC--CcccchHHHHHHHHHHHHHHHHHHHH
Confidence 3788999999999999999999874211 01111111123466677888888775
|
|
| >PRK07395 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0001 Score=91.73 Aligned_cols=53 Identities=21% Similarity=0.156 Sum_probs=36.1
Q ss_pred CccEEECCCCCcCCCCEEEecccccccCccCCCCcceec-cHHHHHHHHHHHHHHhc
Q psy2951 297 QKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIG-HYQLAQYHGRIAALNMV 352 (1466)
Q Consensus 297 ~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~-~~~~A~~~g~~aa~~i~ 352 (1466)
-|.|.+|...+|++||+||+|+|+..- . +|...--+ ....+.--|+.+++.++
T Consensus 347 ~GGi~vd~~~~t~I~GLyAaGE~a~~G--~-hGanRL~gnsl~e~lvfG~~a~~~~~ 400 (553)
T PRK07395 347 MGGVVTDLNNQTSIPGLYAVGETASTG--V-HGANRLASNSLLECLVFAAQLAQLEL 400 (553)
T ss_pred CCCeeECCCCcccCCCEEECccccccC--C-CcccchHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999987421 1 23222111 23345667888888875
|
|
| >COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=2e-05 Score=82.43 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=31.6
Q ss_pred CcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCC
Q psy2951 1067 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENF 1102 (1466)
Q Consensus 1067 ~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~ 1102 (1466)
.+|+|||+|+||++||..|++.|+ +|+|+||...
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~--~vtV~eKg~G 35 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGR--EVTVFEKGRG 35 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCc--EEEEEEcCCC
Confidence 479999999999999999999999 9999999843
|
|
| >TIGR01790 carotene-cycl lycopene cyclase family protein | Back alignment and domain information |
|---|
Probab=97.88 E-value=2.9e-05 Score=93.74 Aligned_cols=107 Identities=16% Similarity=0.185 Sum_probs=63.6
Q ss_pred cEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCC----CCCCcc-----chhc----------c-------------
Q psy2951 45 TFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP----YDRVKL-----SKQL----------D------------- 92 (1466)
Q Consensus 45 dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~----~~~~~~-----~~~~----------~------------- 92 (1466)
||+||||||||+++|+.|++.|.++.|++...+...+ +....+ .... .
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 7999999999999999999999998887754421111 000000 0000 0
Q ss_pred -cCcccccccChhhhhcCCeEEEeCceEEEecc-ccccEEEecCCcEEecCEEEEccCCCC
Q psy2951 93 -IKADSILLRTEEFYKDNDIHVIKGKKIISDSE-LNEKKIKLQDGTSIDFTKIYLATGSSP 151 (1466)
Q Consensus 93 -~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~-~~~~~v~~~~~~~~~~d~lviAtG~~~ 151 (1466)
.....+...+.+.+.+.+++++.+..+....+ .+...+++.++.+++++.||.|+|..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 00011111223334455788875543332222 233556677777899999999999876
|
This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. |
| >PRK06834 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=4.5e-05 Score=93.69 Aligned_cols=111 Identities=14% Similarity=0.257 Sum_probs=69.9
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCC--------------Cccchhc---------------c
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR--------------VKLSKQL---------------D 92 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~~--------------~~~~~~~---------------~ 92 (1466)
..+||+||||||+|+++|..|++.|.++.|+|..+.......+ ..+...+ .
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 81 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATR 81 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEe
Confidence 4589999999999999999999999999998865532100000 0000000 0
Q ss_pred cCccc---------------ccccChhhhhcCCeEEEeCceEEEec-cccccEEEecCCcEEecCEEEEccCCCCC
Q psy2951 93 IKADS---------------ILLRTEEFYKDNDIHVIKGKKIISDS-ELNEKKIKLQDGTSIDFTKIYLATGSSPR 152 (1466)
Q Consensus 93 ~~~~~---------------~~~~~~~~~~~~~v~~~~~~~v~~~~-~~~~~~v~~~~~~~~~~d~lviAtG~~~~ 152 (1466)
..... +...+.+.+++.+++++.++.+.... +.+..++++.++.++.+|+||.|.|.+..
T Consensus 82 ~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~ 157 (488)
T PRK06834 82 LDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSL 157 (488)
T ss_pred cccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCC
Confidence 00000 00112233456689999998876532 22344566667778999999999998654
|
|
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.87 E-value=3.6e-05 Score=92.94 Aligned_cols=112 Identities=19% Similarity=0.302 Sum_probs=69.3
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCC----CCCCC--------------Cccchh------------
Q psy2951 41 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENF----LPYDR--------------VKLSKQ------------ 90 (1466)
Q Consensus 41 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~----~~~~~--------------~~~~~~------------ 90 (1466)
..++||+||||||+|+++|+.|++.|.++.|+|..+... .+..+ ..+...
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~ 83 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRM 83 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEE
Confidence 456899999999999999999999999998887654211 00000 000000
Q ss_pred ----------cccCcc--------------cccccChhhhhcCCeEEEeCceEEEec-cccccEEEecCCcEEecCEEEE
Q psy2951 91 ----------LDIKAD--------------SILLRTEEFYKDNDIHVIKGKKIISDS-ELNEKKIKLQDGTSIDFTKIYL 145 (1466)
Q Consensus 91 ----------~~~~~~--------------~~~~~~~~~~~~~~v~~~~~~~v~~~~-~~~~~~v~~~~~~~~~~d~lvi 145 (1466)
...... .+...+.+.+++.+++++.++.+.... +.+..+++++++.++.+|.||.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~ 163 (392)
T PRK08773 84 RVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIA 163 (392)
T ss_pred EEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEE
Confidence 000000 000111223445689999888776532 2234556677788899999999
Q ss_pred ccCCCCC
Q psy2951 146 ATGSSPR 152 (1466)
Q Consensus 146 AtG~~~~ 152 (1466)
|.|....
T Consensus 164 AdG~~S~ 170 (392)
T PRK08773 164 ADGAAST 170 (392)
T ss_pred ecCCCch
Confidence 9998653
|
|
| >PLN02697 lycopene epsilon cyclase | Back alignment and domain information |
|---|
Probab=97.87 E-value=4.4e-05 Score=93.14 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=30.2
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEE
Q psy2951 41 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFI 74 (1466)
Q Consensus 41 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~ 74 (1466)
...+||+||||||||+++|..|++.|++|.+++.
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~ 139 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGP 139 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecC
Confidence 3468999999999999999999999999888653
|
|
| >PRK08071 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00014 Score=89.98 Aligned_cols=54 Identities=28% Similarity=0.330 Sum_probs=38.7
Q ss_pred CccEEECCCCCcCCCCEEEecccccccCccCCCCcceec--cHHHHHHHHHHHHHHhcCC
Q psy2951 297 QKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIG--HYQLAQYHGRIAALNMVEK 354 (1466)
Q Consensus 297 ~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~--~~~~A~~~g~~aa~~i~~~ 354 (1466)
-|.|.+|...+|++||+||+|+|+..- . +|.. +.+ ....+.-.|+.|++++...
T Consensus 332 ~GGi~vd~~~~t~I~GLyAaGE~a~~g--~-hGan-rl~g~sl~~~~v~G~~Ag~~aa~~ 387 (510)
T PRK08071 332 MGGVKTNLDGETSIPGLYAIGEVACTG--V-HGAN-RLASNSLLEGLVFGKRAAEHILTK 387 (510)
T ss_pred cCCEEECCCCcccCCCeEEcccccccc--c-CCCc-ccchHHHHHHHHHHHHHHHHHHhh
Confidence 378999999999999999999997521 1 1222 222 3455677899999998654
|
|
| >PLN02815 L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0006 Score=85.18 Aligned_cols=54 Identities=24% Similarity=0.188 Sum_probs=37.8
Q ss_pred CCcEEeCCCCCCCCCCeEEeccccc-cCCcccCCceeeeccHHHHHHHHHHHHHHhcc
Q psy2951 849 QKAVVVNEYLETNVPGVYAGGDIAY-APLHSFYNKNASIGHYQLAQYHGRIAALNMVE 905 (1466)
Q Consensus 849 ~G~i~vd~~~~t~~~~iya~GD~~~-~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~ 905 (1466)
-|.|.+|...+|+.||+||+|+|+. ... +..+..-.....++..|+.|++++..
T Consensus 377 ~GGi~vD~~~~t~IpGLyAaGE~a~~G~h---Ganrl~gnsl~e~lvfGr~Ag~~aa~ 431 (594)
T PLN02815 377 CGGVRTGLQGETNVQGLYAAGEVACTGLH---GANRLASNSLLEALVFARRAVQPSID 431 (594)
T ss_pred CCCeeECCCCceecCCEEecccccccCCC---CCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 3779999999999999999999974 221 11111112345777888888888753
|
|
| >PRK09077 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0011 Score=82.90 Aligned_cols=55 Identities=22% Similarity=0.267 Sum_probs=38.9
Q ss_pred CCcEEeCCCCCCCCCCeEEeccccc-cCCcccCCceeeeccHHHHHHHHHHHHHHhccC
Q psy2951 849 QKAVVVNEYLETNVPGVYAGGDIAY-APLHSFYNKNASIGHYQLAQYHGRIAALNMVEK 906 (1466)
Q Consensus 849 ~G~i~vd~~~~t~~~~iya~GD~~~-~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~ 906 (1466)
.|.|.+|.+.+|+.|++||+|+|+. ... +..+..-.....|...|++|++++...
T Consensus 353 ~GGi~vd~~~~t~I~GLyAaGE~a~~g~h---Ganrl~gnsl~~~~vfG~~Ag~~aa~~ 408 (536)
T PRK09077 353 CGGVMVDLHGRTDLDGLYAIGEVSYTGLH---GANRMASNSLLECLVYGRSAAEDILSR 408 (536)
T ss_pred cCCeeECCCCccccCCEEecccccccccC---CCccchhhhHHHHHHHHHHHHHHHHHh
Confidence 4779999999999999999999973 221 111111123457888899999988653
|
|
| >PRK08071 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=9.9e-05 Score=91.28 Aligned_cols=55 Identities=25% Similarity=0.260 Sum_probs=38.5
Q ss_pred CCcEEeCCCCCCCCCCeEEeccccc-cCCcccCCceeeeccHHHHHHHHHHHHHHhccC
Q psy2951 849 QKAVVVNEYLETNVPGVYAGGDIAY-APLHSFYNKNASIGHYQLAQYHGRIAALNMVEK 906 (1466)
Q Consensus 849 ~G~i~vd~~~~t~~~~iya~GD~~~-~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~ 906 (1466)
-|.|.+|.+.+|+.|++||+|+|+. ... +..+..-.....+...|+.|++++...
T Consensus 332 ~GGi~vd~~~~t~I~GLyAaGE~a~~g~h---Ganrl~g~sl~~~~v~G~~Ag~~aa~~ 387 (510)
T PRK08071 332 MGGVKTNLDGETSIPGLYAIGEVACTGVH---GANRLASNSLLEGLVFGKRAAEHILTK 387 (510)
T ss_pred cCCEEECCCCcccCCCeEEcccccccccC---CCcccchHHHHHHHHHHHHHHHHHHhh
Confidence 3779999999999999999999974 221 111111123457778899999988643
|
|
| >PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.86 E-value=9.9e-05 Score=92.44 Aligned_cols=54 Identities=11% Similarity=0.140 Sum_probs=37.3
Q ss_pred CCcEEeCCCCCCC-CCCeEEeccccc-cCCcccCCceeeeccHHHHHHHHHHHHHHhcc
Q psy2951 849 QKAVVVNEYLETN-VPGVYAGGDIAY-APLHSFYNKNASIGHYQLAQYHGRIAALNMVE 905 (1466)
Q Consensus 849 ~G~i~vd~~~~t~-~~~iya~GD~~~-~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~ 905 (1466)
.|.|.+|.+.+|+ .|++||+|+|+. ... +..+..-.....+...|++|+.+++.
T Consensus 346 ~GGi~vd~~~~t~~IpGLyAaGE~a~~g~h---Ganrlggnsl~~~~v~G~~Ag~~aa~ 401 (566)
T PRK06452 346 MGGIDVDIDGRNPDIVGLFSAGEAACVSVH---GANRLGSNSLLDTLVFGQVTGRTVVQ 401 (566)
T ss_pred cCCeEECCCCCcCCcCCeEecccccccCCC---CcccccchHHHHHHHHHHHHHHHHHH
Confidence 4789999999985 999999999975 221 11111112335788888888888764
|
|
| >PLN02815 L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00039 Score=86.83 Aligned_cols=54 Identities=26% Similarity=0.219 Sum_probs=37.8
Q ss_pred CccEEECCCCCcCCCCEEEecccccccCccCCCCcce-eccHHHHHHHHHHHHHHhcC
Q psy2951 297 QKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNAS-IGHYQLAQYHGRIAALNMVE 353 (1466)
Q Consensus 297 ~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~g~~~~-~~~~~~A~~~g~~aa~~i~~ 353 (1466)
-|.|.+|...+|++||+||+|+|+..- .| |.... -.....+.-.|+.|+++++.
T Consensus 377 ~GGi~vD~~~~t~IpGLyAaGE~a~~G--~h-Ganrl~gnsl~e~lvfGr~Ag~~aa~ 431 (594)
T PLN02815 377 CGGVRTGLQGETNVQGLYAAGEVACTG--LH-GANRLASNSLLEALVFARRAVQPSID 431 (594)
T ss_pred CCCeeECCCCceecCCEEecccccccC--CC-CCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999997421 12 22211 12345567788888888763
|
|
| >PRK07190 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=6.4e-05 Score=92.26 Aligned_cols=108 Identities=17% Similarity=0.225 Sum_probs=68.4
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCC-CCC--------------Cccc------------------
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP-YDR--------------VKLS------------------ 640 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~-~~~--------------~~~~------------------ 640 (1466)
...+|+||||||+||++|..|+++|.+ |+++|+.+... ... ..+.
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi~--V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~ 81 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLCGLN--TVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWAN 81 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCCC--EEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecC
Confidence 357999999999999999999999988 67777654211 000 0000
Q ss_pred -hhcc---c---Ccc-c------------ccccCHhHhhhCCcEEEEceEEEEecc-ccccEEEccCCCEEecCEEEEcC
Q psy2951 641 -KQLD---I---KAD-S------------ILLRTEEFYKDNDIHVIKGKKIISDSE-LNEKKIKLQDGTSIDFTKIYLAT 699 (1466)
Q Consensus 641 -~~~~---~---~~~-~------------~~~~~~~~~~~~gv~~~~~~~v~~i~~-~~~~~v~~~~~~~~~~d~lviAt 699 (1466)
..+. . ... . +...+.+.+.+.|++++.+++|+.+.. .+...+.+.+++++.+++||.|+
T Consensus 82 g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgAD 161 (487)
T PRK07190 82 GKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGAD 161 (487)
T ss_pred CceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECC
Confidence 0000 0 000 0 000112234567999999999998832 22334556677899999999999
Q ss_pred CCCC
Q psy2951 700 GSSP 703 (1466)
Q Consensus 700 G~~~ 703 (1466)
|++.
T Consensus 162 G~~S 165 (487)
T PRK07190 162 GSRS 165 (487)
T ss_pred CCCH
Confidence 9754
|
|
| >PRK07190 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=5.1e-05 Score=93.09 Aligned_cols=111 Identities=16% Similarity=0.198 Sum_probs=68.8
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCC-------------CCCccc-------------------
Q psy2951 41 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY-------------DRVKLS------------------- 88 (1466)
Q Consensus 41 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~-------------~~~~~~------------------- 88 (1466)
+..+||+||||||+|+++|..|++.|.++.|++..+...... ....+.
T Consensus 3 ~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g 82 (487)
T PRK07190 3 TQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANG 82 (487)
T ss_pred CccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCC
Confidence 345899999999999999999999999998887654321000 000000
Q ss_pred hhcc---c---Ccc-------------cccccChhhhhcCCeEEEeCceEEEec-cccccEEEecCCcEEecCEEEEccC
Q psy2951 89 KQLD---I---KAD-------------SILLRTEEFYKDNDIHVIKGKKIISDS-ELNEKKIKLQDGTSIDFTKIYLATG 148 (1466)
Q Consensus 89 ~~~~---~---~~~-------------~~~~~~~~~~~~~~v~~~~~~~v~~~~-~~~~~~v~~~~~~~~~~d~lviAtG 148 (1466)
..+. . ... .+...+.+.+++.++++..++.+.... +.+..++.+.+++++.+++||.|.|
T Consensus 83 ~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG 162 (487)
T PRK07190 83 KFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADG 162 (487)
T ss_pred ceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCC
Confidence 0000 0 000 000011223446789999998876532 2334456666777899999999999
Q ss_pred CCC
Q psy2951 149 SSP 151 (1466)
Q Consensus 149 ~~~ 151 (1466)
.+.
T Consensus 163 ~~S 165 (487)
T PRK07190 163 SRS 165 (487)
T ss_pred CCH
Confidence 754
|
|
| >TIGR00292 thiazole biosynthesis enzyme | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00029 Score=78.02 Aligned_cols=167 Identities=19% Similarity=0.185 Sum_probs=104.1
Q ss_pred CcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCccc----------cc---------------------------ccCHH
Q psy2951 183 SNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF----------QE---------------------------SLGKE 225 (1466)
Q Consensus 183 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~----------~~---------------------------~~~~~ 225 (1466)
.+|+|||+|++|+-+|..+++.|.+|.++++...+- .. ....+
T Consensus 22 ~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~e 101 (254)
T TIGR00292 22 SDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSAE 101 (254)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHHH
Confidence 479999999999999999999999999999875321 00 01134
Q ss_pred HHHHHHHHHHhCCcEEEcCceEEEEEecCCC-CeEEEEcC-----------CCcEEeccEEEEeeccccC-cccc-ccCC
Q psy2951 226 VGERITKLFESKGVKFVMKANVSSFEKNEKN-DVTAANLD-----------NGTTIPADLVIVGIGTVLN-TNYL-DGKG 291 (1466)
Q Consensus 226 ~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~-~~~~v~~~-----------~g~~i~~D~Vi~a~G~~p~-~~~l-~~~g 291 (1466)
+.+.+.+...+.|++++.++.+.++..+++. ++..+.++ +..++.++.||.|||.... ..++ +..+
T Consensus 102 l~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l~~~~~ 181 (254)
T TIGR00292 102 FISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVCAKKIV 181 (254)
T ss_pred HHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHHHHHcC
Confidence 5566677777889999999999998765432 46665543 2247899999999996543 2222 2222
Q ss_pred ceecCC---c--cEEEC--CCC---Cc--CCCCEEEecccccccCccCCCCcceeccHHHH-HHHHHHHHHHhcCC
Q psy2951 292 VELNGQ---K--AVVVN--EYL---ET--NVPGVYAGGDIAYAPLHSFYNKNASIGHYQLA-QYHGRIAALNMVEK 354 (1466)
Q Consensus 292 l~~~~~---g--~i~vd--~~~---~t--~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A-~~~g~~aa~~i~~~ 354 (1466)
+..... | ...++ |.+ .| -+|++|++|=.+.. +.| ..|.|-.--+ .-+|+.||+.++.+
T Consensus 182 ~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~~~g~~~~gm~~~~----~~~-~~rmgp~fg~m~~sg~~~a~~~~~~ 252 (254)
T TIGR00292 182 LEDQVPKLGGEKSMWAEVAEVAIHENTREVVPNLYVAGMAVAA----VHG-LPRMGPIFGGMLLSGKHVAEQILEK 252 (254)
T ss_pred cccCCcccCCchhhhhhhhHHHHHhccCcccCCEEEechhhhh----hcC-CCCcCchHHHHHHhhHHHHHHHHHH
Confidence 221110 1 11111 110 22 47999999944331 112 2233433334 35888898887654
|
This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis. |
| >TIGR01790 carotene-cycl lycopene cyclase family protein | Back alignment and domain information |
|---|
Probab=97.85 E-value=4.5e-05 Score=92.02 Aligned_cols=104 Identities=17% Similarity=0.275 Sum_probs=65.8
Q ss_pred eEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCc------c-----chhcc---------------------
Q psy2951 597 TFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK------L-----SKQLD--------------------- 644 (1466)
Q Consensus 597 ~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~------~-----~~~~~--------------------- 644 (1466)
||+||||||||+++|+.|++.|.+ |+++|+.+..+..... + .....
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~--v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLR--VQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTA 78 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCe--EEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCc
Confidence 699999999999999999999987 7888876543321100 0 00000
Q ss_pred ---cCcccccccCHhHhhhCCcEEEEceEEEEeccc--cccEEEccCCCEEecCEEEEcCCCCC
Q psy2951 645 ---IKADSILLRTEEFYKDNDIHVIKGKKIISDSEL--NEKKIKLQDGTSIDFTKIYLATGSSP 703 (1466)
Q Consensus 645 ---~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~--~~~~v~~~~~~~~~~d~lviAtG~~~ 703 (1466)
.+...+...+.+.+.+.|++++.++ |..+... ....+++.++.+++++.||.|+|..+
T Consensus 79 ~~~i~~~~l~~~l~~~~~~~gv~~~~~~-v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 79 YGSVDSTRLHEELLQKCPEGGVLWLERK-AIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred eeEEcHHHHHHHHHHHHHhcCcEEEccE-EEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 0011111222233455688887554 7776222 23456666777999999999999766
|
This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. |
| >PRK06854 adenylylsulfate reductase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00012 Score=92.35 Aligned_cols=34 Identities=12% Similarity=0.218 Sum_probs=29.7
Q ss_pred CCCcEEEECCchHHHHHHHHHHhc--CCCCcEEEEc
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQN--GFTGKLYFIT 75 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~--g~~v~i~~~~ 75 (1466)
..+||||||||.||++||+.+++. |.+|.|++..
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~ 45 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKA 45 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECC
Confidence 357999999999999999999998 8888887644
|
|
| >PRK06184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=5.1e-05 Score=94.54 Aligned_cols=36 Identities=28% Similarity=0.447 Sum_probs=32.0
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCC
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE 77 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~ 77 (1466)
.++||+||||||+|+++|..|++.|.++.|+|..+.
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~ 37 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPE 37 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 358999999999999999999999999999886543
|
|
| >TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00013 Score=90.94 Aligned_cols=31 Identities=23% Similarity=0.333 Sum_probs=27.4
Q ss_pred cEEEECCchHHHHHHHHHH----hcCCCCcEEEEc
Q psy2951 45 TFIVVGGGPSGATCVETLR----QNGFTGKLYFIT 75 (1466)
Q Consensus 45 dVvIIGgG~AGl~aA~~l~----~~g~~v~i~~~~ 75 (1466)
||||||||.|||+||+.++ +.|.+|.|++..
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~ 35 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKA 35 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEcc
Confidence 7999999999999999998 678888887654
|
During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins. |
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.83 E-value=6.4e-05 Score=90.60 Aligned_cols=107 Identities=13% Similarity=0.117 Sum_probs=66.3
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCC--C-------------------------CCccch-hc--
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY--D-------------------------RVKLSK-QL-- 643 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~--~-------------------------~~~~~~-~~-- 643 (1466)
..++|+||||||||+++|..|++.|++ |+++|+.+.... . ...... ..
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~--v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~ 81 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHS--VTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYH 81 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCc--EEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEec
Confidence 458999999999999999999999998 666665532210 0 000000 00
Q ss_pred -c-----cCc-----cc---------ccccCHhHhh-hCCcEEEEceEEEEecccccc---EEEccCCCEEecCEEEEcC
Q psy2951 644 -D-----IKA-----DS---------ILLRTEEFYK-DNDIHVIKGKKIISDSELNEK---KIKLQDGTSIDFTKIYLAT 699 (1466)
Q Consensus 644 -~-----~~~-----~~---------~~~~~~~~~~-~~gv~~~~~~~v~~i~~~~~~---~v~~~~~~~~~~d~lviAt 699 (1466)
+ ... .. +...+.+.+. ..|++++++++++.+...++. .+++++++++.+|.||-|.
T Consensus 82 ~g~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgAD 161 (388)
T PRK07045 82 DKELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGAD 161 (388)
T ss_pred CCcEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECC
Confidence 0 000 00 0000111122 247999999999988433332 4677788899999999999
Q ss_pred CCC
Q psy2951 700 GSS 702 (1466)
Q Consensus 700 G~~ 702 (1466)
|..
T Consensus 162 G~~ 164 (388)
T PRK07045 162 GAR 164 (388)
T ss_pred CCC
Confidence 964
|
|
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.83 E-value=5.6e-05 Score=91.24 Aligned_cols=109 Identities=17% Similarity=0.336 Sum_probs=69.1
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCC-------ccc-------------hh-----------
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV-------KLS-------------KQ----------- 642 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~-------~~~-------------~~----------- 642 (1466)
..+||+||||||+|+++|+.|+++|++ |+++|+.+...+... .+. ..
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~G~~--v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~ 82 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADAGLS--VALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRR 82 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCE--EEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccE
Confidence 458999999999999999999999988 777776532110000 000 00
Q ss_pred -----------cccCc--------------ccccccCHhHhhhCCcEEEEceEEEEeccc-cccEEEccCCCEEecCEEE
Q psy2951 643 -----------LDIKA--------------DSILLRTEEFYKDNDIHVIKGKKIISDSEL-NEKKIKLQDGTSIDFTKIY 696 (1466)
Q Consensus 643 -----------~~~~~--------------~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~-~~~~v~~~~~~~~~~d~lv 696 (1466)
...+. ..+...+.+.+++.|++++.+++|+++... +...++++++.++.+|.||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV 162 (392)
T PRK08773 83 MRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAI 162 (392)
T ss_pred EEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEE
Confidence 00000 000111122344569999999989887322 2345666778889999999
Q ss_pred EcCCCCCC
Q psy2951 697 LATGSSPR 704 (1466)
Q Consensus 697 iAtG~~~~ 704 (1466)
.|+|....
T Consensus 163 ~AdG~~S~ 170 (392)
T PRK08773 163 AADGAAST 170 (392)
T ss_pred EecCCCch
Confidence 99997554
|
|
| >PRK06184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=5.9e-05 Score=93.99 Aligned_cols=107 Identities=14% Similarity=0.169 Sum_probs=66.0
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCC-------------------------------CCCCccc---
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP-------------------------------YDRVKLS--- 640 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~-------------------------------~~~~~~~--- 640 (1466)
..+|+||||||+||++|..|+++|.+ |+++|+.+... +......
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~--v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~ 80 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVS--FRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDD 80 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCc--EEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCC
Confidence 57999999999999999999999998 66676653211 0000000
Q ss_pred hhcc---c----C-------c-------ccccccCHhHhhhCCcEEEEceEEEEecccc-ccEEEc---cCCCEEecCEE
Q psy2951 641 KQLD---I----K-------A-------DSILLRTEEFYKDNDIHVIKGKKIISDSELN-EKKIKL---QDGTSIDFTKI 695 (1466)
Q Consensus 641 ~~~~---~----~-------~-------~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~-~~~v~~---~~~~~~~~d~l 695 (1466)
..+. . . . ..+...+.+.+.+.|++++++++++++...+ ..++++ .++.++++|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~v 160 (502)
T PRK06184 81 GSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYL 160 (502)
T ss_pred ceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEE
Confidence 0000 0 0 0 0000112233455699999999999883222 233444 45568999999
Q ss_pred EEcCCCCC
Q psy2951 696 YLATGSSP 703 (1466)
Q Consensus 696 viAtG~~~ 703 (1466)
|.|+|...
T Consensus 161 VgADG~~S 168 (502)
T PRK06184 161 VGADGGRS 168 (502)
T ss_pred EECCCCch
Confidence 99999654
|
|
| >PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.83 E-value=2.8e-05 Score=97.18 Aligned_cols=105 Identities=15% Similarity=0.170 Sum_probs=74.5
Q ss_pred CCeEEEEcCCHHHHHHHHH-------HhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecC
Q psy2951 1205 ESNVVVIGSSFIGMEAAAF-------CASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNE 1277 (1466)
Q Consensus 1205 ~~~vvVvG~g~~g~e~a~~-------l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~ 1277 (1466)
.+..+++|+++++++.+.. +.+.+.+|+++...+..+ ..++..+...|.+.+++.||++++++.++++. .+
T Consensus 160 p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~-~~ 237 (557)
T PRK07843 160 PLNMVVMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNL-LGMGQALAAGLRIGLQRAGVPVLLNTPLTDLY-VE 237 (557)
T ss_pred cccccccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCc-ccCcHHHHHHHHHHHHcCCCEEEeCCEEEEEE-Ee
Confidence 5668899999999998764 455566677655443222 23567788888899999999999999999998 45
Q ss_pred CCcEEEEEcC-CCC--eeecC-EEEEeec-cccCccccc
Q psy2951 1278 KNDVTAANLD-NGT--TIPAD-LVIVGIG-TVLNTNYLD 1311 (1466)
Q Consensus 1278 ~g~~~~v~l~-~g~--~i~~D-~vv~a~G-~~p~~~~~~ 1311 (1466)
++++..|... +|+ ++.++ .||+|+| +.+|.++++
T Consensus 238 ~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~~ 276 (557)
T PRK07843 238 DGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMRA 276 (557)
T ss_pred CCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHHH
Confidence 6778777664 443 47785 6888766 455544443
|
|
| >PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00044 Score=87.11 Aligned_cols=32 Identities=16% Similarity=0.224 Sum_probs=27.7
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE 629 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~ 629 (1466)
..||||||||.|||+||+.+++. .+ |+++++.
T Consensus 5 ~~DVlVIG~G~AGl~AAl~aa~~-~~--VilleK~ 36 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGPR-AR--TAVLTKL 36 (583)
T ss_pred eccEEEECccHHHHHHHHHHHhC-CC--EEEEeCC
Confidence 47999999999999999999975 55 7888875
|
|
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00023 Score=85.45 Aligned_cols=56 Identities=23% Similarity=0.341 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhcC-cEEEccceEEEEEecCCCceEEEECC-CCcEEecCEEEEccccc
Q psy2951 776 KEVGERITKLFESKG-VKFVMKANVSSFEKNEKNDVTAANLD-NGTTIPADLVIVGIGTV 833 (1466)
Q Consensus 776 ~~~~~~~~~~l~~~g-v~~~~~~~v~~i~~~~~~~~~~v~~~-~g~~i~~D~vi~a~G~~ 833 (1466)
..+...+.+.+.+.+ |+++.+++++.++.++ +.+. ++++ +|+++.||+||-|-|..
T Consensus 104 ~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~-~~v~-v~l~~dG~~~~a~llVgADG~~ 161 (387)
T COG0654 104 SDLLNALLEAARALPNVTLRFGAEVEAVEQDG-DGVT-VTLSFDGETLDADLLVGADGAN 161 (387)
T ss_pred HHHHHHHHHHHhhCCCcEEEcCceEEEEEEcC-CceE-EEEcCCCcEEecCEEEECCCCc
Confidence 346677778777766 9999999999999543 3444 6667 99999999999999964
|
|
| >PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=4.8e-05 Score=92.43 Aligned_cols=111 Identities=13% Similarity=0.191 Sum_probs=68.9
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCC---C--------------Cccchh---------------
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD---R--------------VKLSKQ--------------- 642 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~---~--------------~~~~~~--------------- 642 (1466)
++||+||||||||+++|..|+++|....|+++|+.+..... . ..+...
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~ 80 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITD 80 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEe
Confidence 47899999999999999999999733347777775321100 0 000000
Q ss_pred -----------cc--------------cCcccccccCHhHhhhCCcEEEEceEEEEecc-ccccEEEccCCCEEecCEEE
Q psy2951 643 -----------LD--------------IKADSILLRTEEFYKDNDIHVIKGKKIISDSE-LNEKKIKLQDGTSIDFTKIY 696 (1466)
Q Consensus 643 -----------~~--------------~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~-~~~~~v~~~~~~~~~~d~lv 696 (1466)
.. .....+...+.+.+.+.|++++.+++|+.+.. .....++++++.++.+|.||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI 160 (403)
T PRK07333 81 SRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLV 160 (403)
T ss_pred CCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEE
Confidence 00 00001111122334556999999999988832 22334666778889999999
Q ss_pred EcCCCCCCc
Q psy2951 697 LATGSSPRT 705 (1466)
Q Consensus 697 iAtG~~~~~ 705 (1466)
.|+|.....
T Consensus 161 ~AdG~~S~v 169 (403)
T PRK07333 161 AADGARSKL 169 (403)
T ss_pred EcCCCChHH
Confidence 999975443
|
|
| >PF13454 NAD_binding_9: FAD-NAD(P)-binding | Back alignment and domain information |
|---|
Probab=97.81 E-value=9.2e-05 Score=75.69 Aligned_cols=33 Identities=27% Similarity=0.520 Sum_probs=28.6
Q ss_pred EEECCchHHHHHHHHHHhcC---CCCcEEEEcCCCC
Q psy2951 1070 IVVGGGPSGATCVETLRQNG---FTGKLYFITDENF 1102 (1466)
Q Consensus 1070 vIVG~G~aGl~aA~~L~~~g---~~~~i~li~~~~~ 1102 (1466)
+|||+|++|++++.+|.+.. ...+|+|||+++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 69999999999999998873 4579999999653
|
|
| >TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00035 Score=84.80 Aligned_cols=57 Identities=19% Similarity=0.262 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccc
Q psy2951 1247 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTV 1304 (1466)
Q Consensus 1247 ~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~ 1304 (1466)
..+...+.+.++++|++++.+++|++++..+++.+..|.+.+| ++.+|.||+++|..
T Consensus 183 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~ 239 (407)
T TIGR01373 183 DAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGH 239 (407)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChh
Confidence 4556667788899999999999999996333456666887777 68999998887754
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms. |
| >TIGR03229 benzo_1_2_benA benzoate 1,2-dioxygenase, large subunit | Back alignment and domain information |
|---|
Probab=97.80 E-value=2.2e-05 Score=92.56 Aligned_cols=75 Identities=21% Similarity=0.279 Sum_probs=57.0
Q ss_pred hhhhhhhhhhhhcCCCCCCCccccceee-cCCEEEcCCCCceeecCCCccccCCCC--------------CCCCeEEEEE
Q psy2951 970 AAQFAERNIYAVGTKCSHYGAPLVKGSL-GDGRVRCPWHGACFNIATGDIEDFPGM--------------DSLPCYKVTI 1034 (1466)
Q Consensus 970 ~~~~~~g~~~a~~~~C~h~g~~l~~g~~-~~~~~~cp~h~~~f~~~~g~~~~~p~~--------------~~l~~~~v~~ 1034 (1466)
+.+..+|+++|+.+.|+|.+++|..+.. ....+.||||||+|+ .+|++...|.. ..|+.++...
T Consensus 66 v~R~~dG~i~af~N~C~HRga~L~~~~~g~~~~~~CPyHgW~f~-~~G~l~~vP~~~~~~~~~~fd~~~~~~L~~v~rve 144 (433)
T TIGR03229 66 IARNKDGELNAFINACSHRGAMLCRHKRGNKTTYTCPFHGWTFN-NSGKLLKVKDPEDAGYPECFNKDGSHDLKKVARFE 144 (433)
T ss_pred EEECCCCcEEEEeCcCCCCCCCcccccccCCCEEEcCCCCCEec-CCcceEeCCCcccccCccccCcHhhcCCccceEEE
Confidence 3445688999999999999999998754 456899999999999 89999877652 1256554333
Q ss_pred EcCCEEEEEcc
Q psy2951 1035 QNDDSVVVQAR 1045 (1466)
Q Consensus 1035 ~~~~~~~~~~~ 1045 (1466)
...|.+++...
T Consensus 145 ~y~GfIFv~l~ 155 (433)
T TIGR03229 145 SYRGFLFGSLN 155 (433)
T ss_pred EECCEEEEEcC
Confidence 35678887654
|
Benzoate 1,2-dioxygenase (EC 1.14.12.10) belongs to the larger family of aromatic ring-hydroxylating dioxygenases. Members of this family all act on benzoate, but may have additional activities on various benozate analogs. This model describes the large subunit. Between the trusted and noise cutoffs are similar enzymes, likely to act on benzoate but perhaps best identified according to some other activity, such as 2-chlorobenzoate 1,2-dioxygenase (1.14.12.13). |
| >PRK06134 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00018 Score=90.60 Aligned_cols=101 Identities=18% Similarity=0.172 Sum_probs=65.5
Q ss_pred CCcEEEECCChHH-HHHHHHHhccCCeEEEEeecCccC-------------ccccCHHHHHHHHHHHHhcCcEEEccceE
Q psy2951 734 ESNVVVIGSSFIG-MEAAAFCASKVKSVTVVGRGAVPF-------------QESLGKEVGERITKLFESKGVKFVMKANV 799 (1466)
Q Consensus 734 ~~~vvVvG~G~~g-~e~A~~l~~~g~~V~lv~~~~~~~-------------~~~~~~~~~~~~~~~l~~~gv~~~~~~~v 799 (1466)
..++.++|++.++ .+++..+...+..+.+..+..+.+ ....+..+...+.+.+++.|++++.++.+
T Consensus 161 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~a~~~Gv~i~~~t~v 240 (581)
T PRK06134 161 LRETSFMGMPIMAGADLAAFLNPTRSFRAFLHVARRFARHLIDLARHGRGMHLVNGNALVARLLKSAEDLGVRIWESAPA 240 (581)
T ss_pred cccccccccccccHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHhCCCEEEcCCEE
Confidence 4567778887765 677766655555444332211100 01123456677888889999999999999
Q ss_pred EEEEecCCCceEEEEC--CCCc-EEec-CEEEEccccccC
Q psy2951 800 SSFEKNEKNDVTAANL--DNGT-TIPA-DLVIVGIGTVLN 835 (1466)
Q Consensus 800 ~~i~~~~~~~~~~v~~--~~g~-~i~~-D~vi~a~G~~p~ 835 (1466)
+++..+ ++++..|.. .++. ++.+ +.||+|+|--.+
T Consensus 241 ~~l~~~-~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 279 (581)
T PRK06134 241 RELLRE-DGRVAGAVVETPGGLQEIRARKGVVLAAGGFPH 279 (581)
T ss_pred EEEEEe-CCEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence 998743 556655544 2333 5788 999999987654
|
|
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0002 Score=86.64 Aligned_cols=56 Identities=16% Similarity=0.136 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhc-CcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccC
Q psy2951 778 VGERITKLFESK-GVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLN 835 (1466)
Q Consensus 778 ~~~~~~~~l~~~-gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 835 (1466)
+.+.+.+.+.+. +++++.++++++++.. ++.+ .+.+.+|+++.+|.||.|.|....
T Consensus 111 l~~~L~~~~~~~~~v~~~~~~~v~~i~~~-~~~v-~v~~~~g~~~~ad~vV~AdG~~S~ 167 (396)
T PRK08163 111 IHLSLLEAVLDHPLVEFRTSTHVVGIEQD-GDGV-TVFDQQGNRWTGDALIGCDGVKSV 167 (396)
T ss_pred HHHHHHHHHHhcCCcEEEeCCEEEEEecC-CCce-EEEEcCCCEEecCEEEECCCcChH
Confidence 445566666665 4999999999999843 3333 577788889999999999998654
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00014 Score=96.32 Aligned_cols=35 Identities=20% Similarity=0.436 Sum_probs=30.5
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 630 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~ 630 (1466)
...||||||||.|||+||..+++.|.+ |+++++..
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~--V~lleK~~ 46 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGAN--VLLLEKAH 46 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCe--EEEEeccc
Confidence 357999999999999999999999987 77777754
|
|
| >PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00012 Score=88.63 Aligned_cols=59 Identities=29% Similarity=0.396 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccC
Q psy2951 776 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLN 835 (1466)
Q Consensus 776 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 835 (1466)
..+.+.|.+...+.||+++.++ |+++...+++.+..|.+++|+++.+|.+|=|+|++..
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~ 212 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL 212 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence 4566778888899999999875 7777656678888999999999999999999998653
|
This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A .... |
| >PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated | Back alignment and domain information |
|---|
Probab=97.77 E-value=7.8e-05 Score=90.75 Aligned_cols=34 Identities=26% Similarity=0.438 Sum_probs=30.2
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE 629 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~ 629 (1466)
..+||+|||||+||+.||..+++.|.+ |.++++.
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~k--V~LiE~~ 36 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAK--TLLLTHN 36 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCc--EEEEecc
Confidence 358999999999999999999999998 6666665
|
|
| >TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00041 Score=84.25 Aligned_cols=56 Identities=20% Similarity=0.264 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccc
Q psy2951 777 EVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTV 833 (1466)
Q Consensus 777 ~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 833 (1466)
.+...+.+.+.++|++++.+++|++++..+++.+..+.+++| ++.+|.||+|+|-.
T Consensus 184 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~ 239 (407)
T TIGR01373 184 AVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGH 239 (407)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChh
Confidence 444556778889999999999999997443455666777777 69999998887754
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms. |
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.76 E-value=8.2e-05 Score=90.74 Aligned_cols=38 Identities=24% Similarity=0.431 Sum_probs=31.8
Q ss_pred CCCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC
Q psy2951 591 SSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 630 (1466)
Q Consensus 591 ~~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~ 630 (1466)
..+..+||+||||||||+++|..|++.|++ |+++|+.+
T Consensus 14 ~~~~~~dV~IvGaG~aGl~~A~~L~~~G~~--v~v~E~~~ 51 (415)
T PRK07364 14 TRSLTYDVAIVGGGIVGLTLAAALKDSGLR--IALIEAQP 51 (415)
T ss_pred CCccccCEEEECcCHHHHHHHHHHhcCCCE--EEEEecCC
Confidence 334468999999999999999999999998 66666653
|
|
| >PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated | Back alignment and domain information |
|---|
Probab=97.76 E-value=6.8e-05 Score=91.26 Aligned_cols=34 Identities=26% Similarity=0.337 Sum_probs=31.3
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEc
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFIT 75 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~ 75 (1466)
.++||+|||||+||+.||..+++.|.+|.+++..
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~ 36 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHN 36 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEecc
Confidence 4699999999999999999999999999998755
|
|
| >PTZ00383 malate:quinone oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00023 Score=86.57 Aligned_cols=66 Identities=17% Similarity=0.265 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHh----CC--cEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccCccccccCCc
Q psy2951 1247 KEVGERITKLFES----KG--VKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGV 1315 (1466)
Q Consensus 1247 ~~~~~~l~~~~~~----~g--v~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~~~~~~~~gl 1315 (1466)
..+...+.+.+++ +| ++++++++|++++ ..++....|.+.+| ++.||.||+|+|.... .+++.+|+
T Consensus 211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~-~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~-~La~~~Gi 282 (497)
T PTZ00383 211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIE-RSNDSLYKIHTNRG-EIRARFVVVSACGYSL-LFAQKMGY 282 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEE-ecCCCeEEEEECCC-EEEeCEEEECcChhHH-HHHHHhCC
Confidence 4677778888888 77 8899999999998 34355666887777 6999999999996543 45555554
|
|
| >PRK11728 hydroxyglutarate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00032 Score=84.53 Aligned_cols=65 Identities=20% Similarity=0.364 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCccccccCCc
Q psy2951 776 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGV 844 (1466)
Q Consensus 776 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl 844 (1466)
..+...+.+.+++.|++++.++++.+++.. ++.+ .+.+.++ ++.+|.||+|+|.... .+++.+|+
T Consensus 149 ~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~-~~~~-~V~~~~g-~i~ad~vV~A~G~~s~-~l~~~~g~ 213 (393)
T PRK11728 149 RAVAEAMAELIQARGGEIRLGAEVTALDEH-ANGV-VVRTTQG-EYEARTLINCAGLMSD-RLAKMAGL 213 (393)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEec-CCeE-EEEECCC-EEEeCEEEECCCcchH-HHHHHhCC
Confidence 567778888889999999999999999743 3333 5666666 7999999999998653 34444443
|
|
| >PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=8.6e-05 Score=89.66 Aligned_cols=106 Identities=18% Similarity=0.176 Sum_probs=66.2
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCC--------------------CCccchhc---c-------
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD--------------------RVKLSKQL---D------- 644 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~--------------------~~~~~~~~---~------- 644 (1466)
.++|+||||||||+++|+.|++.|.+ |+++|+.+..... ...+...+ .
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~--v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 82 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLR--VALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDM 82 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCe--EEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEE
Confidence 57999999999999999999999987 7777765432110 00000000 0
Q ss_pred ----cC---------------------cccccccCHhHhhhCC-cEEEEceEEEEec-cccccEEEccCCCEEecCEEEE
Q psy2951 645 ----IK---------------------ADSILLRTEEFYKDND-IHVIKGKKIISDS-ELNEKKIKLQDGTSIDFTKIYL 697 (1466)
Q Consensus 645 ----~~---------------------~~~~~~~~~~~~~~~g-v~~~~~~~v~~i~-~~~~~~v~~~~~~~~~~d~lvi 697 (1466)
.. ...+...+.+.+++.+ ++++ +++++.+. +.+...+++.++.++.+|.||.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~ 161 (388)
T PRK07608 83 RVFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVG 161 (388)
T ss_pred EEEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEE
Confidence 00 0001111223345555 8888 77788873 2234456677787899999999
Q ss_pred cCCCCC
Q psy2951 698 ATGSSP 703 (1466)
Q Consensus 698 AtG~~~ 703 (1466)
|+|...
T Consensus 162 adG~~S 167 (388)
T PRK07608 162 ADGAHS 167 (388)
T ss_pred eCCCCc
Confidence 999643
|
|
| >COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=97.75 E-value=2.5e-05 Score=95.88 Aligned_cols=56 Identities=18% Similarity=0.217 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCCeEEEEcCCCcEEeccEEEEeecc
Q psy2951 224 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGT 280 (1466)
Q Consensus 224 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~ 280 (1466)
..+.+.|.+.++++|++|+++++|++|..++ ++...+.+.++..+++|.||.....
T Consensus 224 ~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~-g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 224 GALVDALAELAREHGGEIRTGAEVSQILVEG-GKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHcCCEEECCCceEEEEEeC-CcceEEeccccceeccceeEecCch
Confidence 6778899999999999999999999998754 4456677777778999999998876
|
|
| >PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00023 Score=89.83 Aligned_cols=293 Identities=14% Similarity=0.089 Sum_probs=0.0
Q ss_pred ccCCCCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCC-------------------------------------
Q psy2951 36 AKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN------------------------------------- 78 (1466)
Q Consensus 36 ~~~~~~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~------------------------------------- 78 (1466)
+......++||||||+|.||++||+.+++.|.+|.|++.....
T Consensus 43 ~~~~~~~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~ 122 (635)
T PLN00128 43 SYTIVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWL 122 (635)
T ss_pred cCcceeeecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCC
Q ss_pred -----------------------CCCCC------------------------CCccchhcccCcccccccChhhhhcCCe
Q psy2951 79 -----------------------FLPYD------------------------RVKLSKQLDIKADSILLRTEEFYKDNDI 111 (1466)
Q Consensus 79 -----------------------~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v 111 (1466)
..+|. ..............+...+.+...+.++
T Consensus 123 ~d~~lv~~l~~~s~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~~gv 202 (635)
T PLN00128 123 GDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHNT 202 (635)
T ss_pred CCHHHHHHHHHhHHHHHHHHHhCCCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHhCCC
Q ss_pred EEEeCceEEEeccccccEE------EecCCc--EEecCEEEEccCCCCCCCCCCCCCCcEEEecCHHHHHhhcccCCCCC
Q psy2951 112 HVIKGKKIISDSELNEKKI------KLQDGT--SIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPES 183 (1466)
Q Consensus 112 ~~~~~~~v~~~~~~~~~~v------~~~~~~--~~~~d~lviAtG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (1466)
+++.++.+......++..+ ...++. .+.++.||+|||.-.. ...........+...+..+.+.-..+..-.
T Consensus 203 ~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~-~~~~tt~~~~~tGDG~~mA~~aGA~l~~me 281 (635)
T PLN00128 203 QFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGR-AYFSATSAHTCTGDGNAMVARAGLPLQDLE 281 (635)
T ss_pred EEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCcc-ccccccCCCCCCCHHHHHHHHcCCCCcCCc
Q ss_pred cEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHH---------HHHHHHHHHHhC------CcEEEcCceEE
Q psy2951 184 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKE---------VGERITKLFESK------GVKFVMKANVS 248 (1466)
Q Consensus 184 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~---------~~~~l~~~l~~~------GV~i~~~~~v~ 248 (1466)
-+-+.-.+..+-.....-.-.|.-..++......|....++. +...+.+.+.+. +-.+++...
T Consensus 282 fvqfhPt~~~~~~~l~~ea~rg~g~~lvN~~GeRF~~~y~~~~~el~~rd~v~~ai~~e~~~~~g~~~~~~~v~ld~~-- 359 (635)
T PLN00128 282 FVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPEKDHIYLHLN-- 359 (635)
T ss_pred ceEEecccccCCCeEEeeeccCCCcEEECCCCCCcccccCcccccccchhHHHHHHHHHHHhcCCCCCCCCEEEEEcC--
Q ss_pred EEEecCCCCeEEEEcCCCcEEeccEE---------EEe--eccccCccccccCCceecCCccEEECCCCC----------
Q psy2951 249 SFEKNEKNDVTAANLDNGTTIPADLV---------IVG--IGTVLNTNYLDGKGVELNGQKAVVVNEYLE---------- 307 (1466)
Q Consensus 249 ~i~~~~~~~~~~v~~~~g~~i~~D~V---------i~a--~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~---------- 307 (1466)
.++.+.+ .+. .|..|..+.++-.....-.-|.|.+|...|
T Consensus 360 -------------------~l~~e~l~~~~~~~~~~~~~~~G~D~~~~pi~v~P~~hyt~GGi~vd~~g~vl~~~g~~~~ 420 (635)
T PLN00128 360 -------------------HLPPEVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHGEVVTIKGDDPD 420 (635)
T ss_pred -------------------CCCHHHHHHHHHHHHHHHHHHcCCCCCCCceEeeccceEecCCcccCCCCeEecccCcccC
Q ss_pred cCCCCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhc
Q psy2951 308 TNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMV 352 (1466)
Q Consensus 308 t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 352 (1466)
|++||+||+|+|+... .|+....--.....+.-.|++|+++++
T Consensus 421 t~IpGLYAaGE~a~~g--~hGanRlggnsL~~a~vfGr~Ag~~aa 463 (635)
T PLN00128 421 AVVPGLMAAGEAACAS--VHGANRLGANSLLDIVVFGRACANRVA 463 (635)
T ss_pred CccCceEeeecccccc--CCCCCCCchhhHHHHHHHHHHHHHHHH
|
|
| >TIGR00275 flavoprotein, HI0933 family | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00023 Score=85.37 Aligned_cols=84 Identities=21% Similarity=0.286 Sum_probs=59.5
Q ss_pred HHHHHHHhhCCCEEEEEeecCcccc-cccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCCeEEEEcCCCcEEeccE
Q psy2951 195 MEAAAFCASKVKSVTVVGRGAVPFQ-ESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADL 273 (1466)
Q Consensus 195 ~e~A~~l~~~g~~Vtlv~~~~~~~~-~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~ 273 (1466)
-++...+.+.|.+++..+... .++ ......+.+.+.+.+++.|+++++++.|.+++.++ + ...+.+ +++++.+|.
T Consensus 76 ~d~~~~~~~~Gv~~~~~~~g~-~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~-~-~~~v~~-~~~~i~ad~ 151 (400)
T TIGR00275 76 KDLIDFFESLGLELKVEEDGR-VFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDD-N-GFGVET-SGGEYEADK 151 (400)
T ss_pred HHHHHHHHHcCCeeEEecCCE-eECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecC-C-eEEEEE-CCcEEEcCE
Confidence 344556677888877664332 221 12346788888999999999999999999997643 2 334555 456899999
Q ss_pred EEEeecccc
Q psy2951 274 VIVGIGTVL 282 (1466)
Q Consensus 274 Vi~a~G~~p 282 (1466)
||+|+|...
T Consensus 152 VIlAtG~~s 160 (400)
T TIGR00275 152 VILATGGLS 160 (400)
T ss_pred EEECCCCcc
Confidence 999999753
|
The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae. |
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00011 Score=89.83 Aligned_cols=57 Identities=26% Similarity=0.409 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeecccc
Q psy2951 1247 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVL 1305 (1466)
Q Consensus 1247 ~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p 1305 (1466)
..+...|.+.++++|++++.+++|++++ .+++.+..|.+.++ ++.+|.||+|+|...
T Consensus 201 ~~~~~~l~~~~~~~G~~i~~~~~V~~i~-~~~~~~~~v~t~~~-~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 201 QLFTQRLAAMAEQLGVKFRFNTPVDGLL-VEGGRITGVQTGGG-VITADAYVVALGSYS 257 (416)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEE-ecCCEEEEEEeCCc-EEeCCEEEECCCcch
Confidence 4667778888899999999999999997 34445555666654 789999999999654
|
|
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00029 Score=84.67 Aligned_cols=57 Identities=16% Similarity=0.250 Sum_probs=42.7
Q ss_pred HHHHHHHHHHh-CCcEEEcCceEEEEEecCCCCeEEEEcCCCcEEeccEEEEeeccccCc
Q psy2951 226 VGERITKLFES-KGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNT 284 (1466)
Q Consensus 226 ~~~~l~~~l~~-~GV~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~ 284 (1466)
+...+.+.+.+ .|++++.++++++++.+++ . ..+++++|.++.+|+||.|.|.....
T Consensus 112 l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~-~-~~v~~~~g~~~~~~lvIgADG~~S~v 169 (384)
T PRK08849 112 IQLGLWQQFAQYPNLTLMCPEKLADLEFSAE-G-NRVTLESGAEIEAKWVIGADGANSQV 169 (384)
T ss_pred HHHHHHHHHHhCCCeEEECCCceeEEEEcCC-e-EEEEECCCCEEEeeEEEEecCCCchh
Confidence 33445455444 4799999999999987543 2 34778889999999999999987644
|
|
| >PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=9.5e-05 Score=89.69 Aligned_cols=47 Identities=17% Similarity=0.306 Sum_probs=35.3
Q ss_pred hhhCCcEEEEceEEEEeccc-cccEEEccCCCEEecCEEEEcCCCCCC
Q psy2951 658 YKDNDIHVIKGKKIISDSEL-NEKKIKLQDGTSIDFTKIYLATGSSPR 704 (1466)
Q Consensus 658 ~~~~gv~~~~~~~v~~i~~~-~~~~v~~~~~~~~~~d~lviAtG~~~~ 704 (1466)
+.+.+++++.++++.++... +...++++++.++.+|.||.|.|....
T Consensus 122 ~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~ 169 (405)
T PRK05714 122 LHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSA 169 (405)
T ss_pred HhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCch
Confidence 44568999999989887322 234566778889999999999996443
|
|
| >TIGR03228 anthran_1_2_A anthranilate 1,2-dioxygenase, large subunit | Back alignment and domain information |
|---|
Probab=97.72 E-value=3.1e-05 Score=91.10 Aligned_cols=74 Identities=20% Similarity=0.407 Sum_probs=58.2
Q ss_pred hhhhhhhhhhhhcCCCCCCCccccc-eeecCCEEEcCCCCceeecCCCccccCCCC-----------CCCCeEEEEEEcC
Q psy2951 970 AAQFAERNIYAVGTKCSHYGAPLVK-GSLGDGRVRCPWHGACFNIATGDIEDFPGM-----------DSLPCYKVTIQND 1037 (1466)
Q Consensus 970 ~~~~~~g~~~a~~~~C~h~g~~l~~-g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~-----------~~l~~~~v~~~~~ 1037 (1466)
+.+..+|++.|+.+.|+|.|++|.. +.-....+.||+|||+|+ .+|++...|.. ..|..+.++. ..
T Consensus 66 v~R~~dG~i~a~~N~C~HRGa~L~~~~~Gn~~~~~CPYHgW~y~-~dG~L~~vp~~~~y~~~fd~~~~~L~~~rv~~-y~ 143 (438)
T TIGR03228 66 VTRDGKGELHALVNACQHRGATLTRVGKGNQSTFTCPFHAWCYK-SDGRLVKVKAPGEYCEGFDKATRGLKKARIAS-YR 143 (438)
T ss_pred EEECCCCCEEEEcccCCCCCCccccCCccccCEEEcCCCCCccc-CCCceeecCcccccCCCCChhhCCCcceeEEE-EC
Confidence 4455689999999999999999986 666667899999999999 89999876532 1266667766 67
Q ss_pred CEEEEEcc
Q psy2951 1038 DSVVVQAR 1045 (1466)
Q Consensus 1038 ~~~~~~~~ 1045 (1466)
|.+++...
T Consensus 144 GfIFv~l~ 151 (438)
T TIGR03228 144 GFVFVSLD 151 (438)
T ss_pred CEEEEEeC
Confidence 78888644
|
Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the large subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase large subunit, among the larger set of ring-hydroxylating dioxygenases. |
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00012 Score=88.29 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=32.8
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCC
Q psy2951 41 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE 77 (1466)
Q Consensus 41 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~ 77 (1466)
+.++||+||||||||+++|..|++.|+++.|+|....
T Consensus 3 ~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07045 3 NNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAAR 39 (388)
T ss_pred CceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCc
Confidence 4568999999999999999999999999999886554
|
|
| >COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00058 Score=77.71 Aligned_cols=84 Identities=19% Similarity=0.209 Sum_probs=65.7
Q ss_pred HHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCCeEEEEcCCCcEEeccEEEEeec
Q psy2951 200 FCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 279 (1466)
Q Consensus 200 ~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G 279 (1466)
+....+....++.-..+.+....-+.+.+.+.+.+++.|++++++++|.+++..+ +.+..+.+++|.++++|.||+|+|
T Consensus 149 e~~aa~a~~eil~~~~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~-~~~~~v~~~~g~~i~~~~vvlA~G 227 (486)
T COG2509 149 EFRAAGAGEEILPIYQRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIED-NEVLGVKLTKGEEIEADYVVLAPG 227 (486)
T ss_pred HHHHhCCCceeeeccccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecC-CceEEEEccCCcEEecCEEEEccC
Confidence 4445565555665444444444558888999999999999999999999998754 447788999999999999999999
Q ss_pred cccCc
Q psy2951 280 TVLNT 284 (1466)
Q Consensus 280 ~~p~~ 284 (1466)
+....
T Consensus 228 rsg~d 232 (486)
T COG2509 228 RSGRD 232 (486)
T ss_pred cchHH
Confidence 87654
|
|
| >PRK07512 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00034 Score=86.62 Aligned_cols=55 Identities=18% Similarity=0.212 Sum_probs=37.7
Q ss_pred CccEEECCCCCcCCCCEEEecccccccCccCCCCcceec-cHHHHHHHHHHHHHHhcCC
Q psy2951 297 QKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIG-HYQLAQYHGRIAALNMVEK 354 (1466)
Q Consensus 297 ~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~-~~~~A~~~g~~aa~~i~~~ 354 (1466)
.|.|.+|...+|++||+||+|+|+..- . +|.....+ ....+.-.|++|+++++..
T Consensus 341 ~GGi~vd~~~~t~I~GLyAaGE~a~~G--~-hGanrl~gnsl~~~~v~G~~ag~~aa~~ 396 (513)
T PRK07512 341 MGGIAVDADGRSSLPGLWAAGEVASTG--L-HGANRLASNSLLEAVVFAARAAEDIAGT 396 (513)
T ss_pred cCCEEECCCCccccCCEEecccccccC--C-CcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999997321 1 12221111 2344567889999988653
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00014 Score=87.41 Aligned_cols=104 Identities=15% Similarity=0.181 Sum_probs=67.4
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCC---Cch----hhc----cCc----------------
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK---LSK----QLD----IKA---------------- 1118 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~---l~~----~~~----~~~---------------- 1118 (1466)
..+|+|||||++|+++|..|++.|+ +|+|+|+.+.....+.. +.. .+. ...
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~--~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~ 83 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGW--DVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRD 83 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCC--CEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCC
Confidence 4689999999999999999999999 99999998642111110 111 010 000
Q ss_pred cc-c---ccc----C-h---h-hhcc-CCcEEEcCCeEEEeecCCCC--eEEecCCcEEecCeEEEecCC
Q psy2951 1119 DS-I---LLR----T-E---E-FYKD-NDIHVIKGKKIISDSELNEK--KIKLQDGTSIDFTKIYLATGS 1172 (1466)
Q Consensus 1119 ~~-~---~~~----~-~---~-~~~~-~~v~~~~~~~v~~i~d~~~~--~v~~~~g~~~~yd~lvlAtG~ 1172 (1466)
.. + ... . . + +++. .+++++.+++|+++ ..... +|.+.+|+++.+|.||.|-|.
T Consensus 84 g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i-~~~~~~v~v~~~~g~~~~ad~vIgADG~ 152 (386)
T PRK07236 84 GRVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGF-EQDGDRVTARFADGRRETADLLVGADGG 152 (386)
T ss_pred CCEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEE-EecCCeEEEEECCCCEEEeCEEEECCCC
Confidence 00 0 000 0 0 0 0011 13578999999999 65443 467789999999999999996
|
|
| >PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0001 Score=75.96 Aligned_cols=106 Identities=17% Similarity=0.166 Sum_probs=58.2
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCc----cch------------hcccCcc---------
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK----LSK------------QLDIKAD--------- 648 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~----~~~------------~~~~~~~--------- 648 (1466)
...||+|||||||||+||+.|++.|++ |.++|+...+++.... +.. .++...+
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~k--V~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~ 93 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLK--VAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVA 93 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS---EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCe--EEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEE
Confidence 468999999999999999999999998 7888887544432211 110 0000000
Q ss_pred ---cccccCHhHhhhCCcEEEEceEEEEeccccccEEE---c------c-----CCCEEecCEEEEcCCC
Q psy2951 649 ---SILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIK---L------Q-----DGTSIDFTKIYLATGS 701 (1466)
Q Consensus 649 ---~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~---~------~-----~~~~~~~d~lviAtG~ 701 (1466)
+....+.....+.|++++..+.|+.+.-.++.+|. + . |-..++++++|=|||-
T Consensus 94 d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGH 163 (230)
T PF01946_consen 94 DSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGH 163 (230)
T ss_dssp -HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---S
T ss_pred cHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCC
Confidence 01111122233579999998888776323323321 1 0 2237999999999994
|
|
| >PRK07512 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00033 Score=86.75 Aligned_cols=55 Identities=16% Similarity=0.189 Sum_probs=37.6
Q ss_pred CCcEEeCCCCCCCCCCeEEeccccc-cCCcccCCceeeeccHHHHHHHHHHHHHHhccC
Q psy2951 849 QKAVVVNEYLETNVPGVYAGGDIAY-APLHSFYNKNASIGHYQLAQYHGRIAALNMVEK 906 (1466)
Q Consensus 849 ~G~i~vd~~~~t~~~~iya~GD~~~-~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~ 906 (1466)
-|.|.+|.+.+|+.|++||+|+|+. ... +..+..-.....+...|++|+++++..
T Consensus 341 ~GGi~vd~~~~t~I~GLyAaGE~a~~G~h---Ganrl~gnsl~~~~v~G~~ag~~aa~~ 396 (513)
T PRK07512 341 MGGIAVDADGRSSLPGLWAAGEVASTGLH---GANRLASNSLLEAVVFAARAAEDIAGT 396 (513)
T ss_pred cCCEEECCCCccccCCEEecccccccCCC---cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3779999999999999999999973 221 111111123356777889998888653
|
|
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00081 Score=81.76 Aligned_cols=56 Identities=20% Similarity=0.243 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCC-----CcEEecCEEEEcccccc
Q psy2951 777 EVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDN-----GTTIPADLVIVGIGTVL 834 (1466)
Q Consensus 777 ~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~-----g~~i~~D~vi~a~G~~p 834 (1466)
.+...+.+.+++.|++++.+++|++++.. ++.+ .+.+.+ +.++.+|.||+|+|...
T Consensus 198 ~~~~~l~~~a~~~G~~i~~~~~V~~i~~~-~~~~-~v~~~~~~~~~~~~i~a~~vV~a~G~~s 258 (410)
T PRK12409 198 KFTTGLAAACARLGVQFRYGQEVTSIKTD-GGGV-VLTVQPSAEHPSRTLEFDGVVVCAGVGS 258 (410)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEE-EEEEEcCCCCccceEecCEEEECCCcCh
Confidence 44566778889999999999999999843 3333 233222 23799999999999654
|
|
| >PLN00093 geranylgeranyl diphosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00016 Score=87.54 Aligned_cols=36 Identities=42% Similarity=0.750 Sum_probs=31.4
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCC
Q psy2951 592 SGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE 629 (1466)
Q Consensus 592 ~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~ 629 (1466)
...++||+||||||||++||+.|++.|++ |+++|+.
T Consensus 36 ~~~~~DViIVGaGPAG~~aA~~LA~~G~~--VlllEr~ 71 (450)
T PLN00093 36 SGRKLRVAVIGGGPAGACAAETLAKGGIE--TFLIERK 71 (450)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCCc--EEEEecC
Confidence 34568999999999999999999999998 7777765
|
|
| >COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00034 Score=71.28 Aligned_cols=168 Identities=22% Similarity=0.248 Sum_probs=106.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccc-------------------------------------cH
Q psy2951 1205 ESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESL-------------------------------------GK 1247 (1466)
Q Consensus 1205 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~-------------------------------------~~ 1247 (1466)
...|+|||+|++|+-+|.+|++.|.+|.++++.-.+-...+ +.
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~ 109 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSA 109 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHH
Confidence 46799999999999999999999999999998754411111 13
Q ss_pred HHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCC-----------CCeeecCEEEEeeccccCcc-ccccC--
Q psy2951 1248 EVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDN-----------GTTIPADLVIVGIGTVLNTN-YLDGK-- 1313 (1466)
Q Consensus 1248 ~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~-----------g~~i~~D~vv~a~G~~p~~~-~~~~~-- 1313 (1466)
++...|....-+.|.++.....|+.+...++.++.+|..+= --.+++++||-+||-....- ++.+.
T Consensus 110 e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~kr~~ 189 (262)
T COG1635 110 EFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLAKRIP 189 (262)
T ss_pred HHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHHHHhcc
Confidence 34445555667889999999999998743333677776642 24689999999999765432 33222
Q ss_pred --CceeeCCCeEEeC--CCc---cc--cCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcC
Q psy2951 1314 --GVELNGQKAVVVN--EYL---ET--NVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVE 1376 (1466)
Q Consensus 1314 --gl~~~~~G~i~vd--~~~---~t--~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g 1376 (1466)
+..+...+....+ +.+ .| -+|++|++|=.++--+ |.+.-=..|..-...|+.||+-++.
T Consensus 190 ~l~~~~~Ge~~mw~e~~E~lvV~~T~eV~pgL~vaGMa~~av~----G~pRMGPiFGgMllSGkkaAe~i~e 257 (262)
T COG1635 190 ELGIEVPGEKSMWAERGEDLVVENTGEVYPGLYVAGMAVNAVH----GLPRMGPIFGGMLLSGKKAAEEILE 257 (262)
T ss_pred ccccccCCCcchhhhHHHHHHHhccccccCCeEeehhhHHhhc----CCcccCchhhhhhhchHHHHHHHHH
Confidence 1222222222222 221 12 2799999996544211 2221112345567788888877654
|
|
| >PRK06134 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00016 Score=90.97 Aligned_cols=100 Identities=18% Similarity=0.183 Sum_probs=64.8
Q ss_pred CcEEEECCCHhH-HHHHHHHhhCCCEEEEEeecCccc-------------ccccCHHHHHHHHHHHHhCCcEEEcCceEE
Q psy2951 183 SNVVVIGSSFIG-MEAAAFCASKVKSVTVVGRGAVPF-------------QESLGKEVGERITKLFESKGVKFVMKANVS 248 (1466)
Q Consensus 183 ~~vvVvGgG~~g-~e~A~~l~~~g~~Vtlv~~~~~~~-------------~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~ 248 (1466)
.++.++|++.++ .+++..+...+..+.+.++....+ ....+..+...+.+..++.|+++++++.++
T Consensus 162 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~a~~~Gv~i~~~t~v~ 241 (581)
T PRK06134 162 RETSFMGMPIMAGADLAAFLNPTRSFRAFLHVARRFARHLIDLARHGRGMHLVNGNALVARLLKSAEDLGVRIWESAPAR 241 (581)
T ss_pred ccccccccccccHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHhCCCEEEcCCEEE
Confidence 366778888765 677766665555544432211100 011235567788888899999999999999
Q ss_pred EEEecCCCCeEEEEc--CCCc-EEec-cEEEEeeccccC
Q psy2951 249 SFEKNEKNDVTAANL--DNGT-TIPA-DLVIVGIGTVLN 283 (1466)
Q Consensus 249 ~i~~~~~~~~~~v~~--~~g~-~i~~-D~Vi~a~G~~p~ 283 (1466)
++..+ ++++..+.. .++. ++.+ +.||+|+|--.+
T Consensus 242 ~l~~~-~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 279 (581)
T PRK06134 242 ELLRE-DGRVAGAVVETPGGLQEIRARKGVVLAAGGFPH 279 (581)
T ss_pred EEEEe-CCEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence 98754 356655543 2332 5788 999999986543
|
|
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00014 Score=87.75 Aligned_cols=106 Identities=20% Similarity=0.220 Sum_probs=64.5
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCC-C------CC--------ccch----------hc---ccCc
Q psy2951 596 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY-D------RV--------KLSK----------QL---DIKA 647 (1466)
Q Consensus 596 ~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~-~------~~--------~~~~----------~~---~~~~ 647 (1466)
++|+||||||||+++|..|++.|++ |+++|+.+...- . .. .+.. .+ ....
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~--v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g 78 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHE--PTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTG 78 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCc--eEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCC
Confidence 4899999999999999999999998 666665532110 0 00 0000 00 0000
Q ss_pred c----------------ccccc----CHhHh---hhCCcEEEEceEEEEecccc-ccEEEccCCCEEecCEEEEcCCCCC
Q psy2951 648 D----------------SILLR----TEEFY---KDNDIHVIKGKKIISDSELN-EKKIKLQDGTSIDFTKIYLATGSSP 703 (1466)
Q Consensus 648 ~----------------~~~~~----~~~~~---~~~gv~~~~~~~v~~i~~~~-~~~v~~~~~~~~~~d~lviAtG~~~ 703 (1466)
. ....- +...+ ...+++++++++|+++...+ ...+++++|+++++|.||.|.|...
T Consensus 79 ~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S 158 (391)
T PRK07588 79 RRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHS 158 (391)
T ss_pred CEEEEecHHHccccCCCceEEEEHHHHHHHHHHhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence 0 00000 01111 12369999999999883222 3356677888899999999999543
|
|
| >PRK08244 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00014 Score=90.55 Aligned_cols=107 Identities=21% Similarity=0.314 Sum_probs=64.7
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCC-C--------------CCCccch----------------h-
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP-Y--------------DRVKLSK----------------Q- 642 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~-~--------------~~~~~~~----------------~- 642 (1466)
.++|+||||||+|+++|..|++.|.+ |+++|+.+... . ....+.. .
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~--v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~ 79 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVK--TCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLD 79 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCc--EEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEeccc
Confidence 37899999999999999999999988 66666653211 0 0000000 0
Q ss_pred --cccC-------------cccccccCHhHhhhCCcEEEEceEEEEecccc-ccEEEcc--CC-CEEecCEEEEcCCCCC
Q psy2951 643 --LDIK-------------ADSILLRTEEFYKDNDIHVIKGKKIISDSELN-EKKIKLQ--DG-TSIDFTKIYLATGSSP 703 (1466)
Q Consensus 643 --~~~~-------------~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~-~~~v~~~--~~-~~~~~d~lviAtG~~~ 703 (1466)
+... ...+...+.+.+++.|++++.+++++++...+ ..++++. ++ .++++|+||.|.|...
T Consensus 80 ~~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S 159 (493)
T PRK08244 80 TRLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGS 159 (493)
T ss_pred ccCCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCCh
Confidence 0000 00001111223455799999999998873222 2233333 34 4799999999999754
|
|
| >PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=7.9e-05 Score=89.99 Aligned_cols=35 Identities=34% Similarity=0.400 Sum_probs=31.4
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCC
Q psy2951 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE 77 (1466)
Q Consensus 43 ~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~ 77 (1466)
++||+||||||||+++|+.|++.|.++.|+|....
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAP 39 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 57999999999999999999999999988876554
|
|
| >TIGR02023 BchP-ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0001 Score=88.70 Aligned_cols=32 Identities=44% Similarity=0.605 Sum_probs=29.6
Q ss_pred CcEEEECCchHHHHHHHHHHhcCCCCcEEEEc
Q psy2951 44 DTFIVVGGGPSGATCVETLRQNGFTGKLYFIT 75 (1466)
Q Consensus 44 ~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~ 75 (1466)
+||+||||||||++||+.|++.|++|.|+|..
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 69999999999999999999999999888764
|
This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ). |
| >TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00011 Score=88.42 Aligned_cols=42 Identities=12% Similarity=0.206 Sum_probs=33.0
Q ss_pred CCcEEEEceEEEEec-cccccEEEccCCCEEecCEEEEcCCCC
Q psy2951 661 NDIHVIKGKKIISDS-ELNEKKIKLQDGTSIDFTKIYLATGSS 702 (1466)
Q Consensus 661 ~gv~~~~~~~v~~i~-~~~~~~v~~~~~~~~~~d~lviAtG~~ 702 (1466)
.|++++.+++|+.+. +....+++++++.++.+|.||.|.|..
T Consensus 119 ~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~ 161 (382)
T TIGR01984 119 TNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGAN 161 (382)
T ss_pred CCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCC
Confidence 489999999998883 223445666778889999999999964
|
This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype. |
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=97.64 E-value=8.3e-05 Score=88.80 Aligned_cols=33 Identities=24% Similarity=0.466 Sum_probs=27.6
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC
Q psy2951 596 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 630 (1466)
Q Consensus 596 ~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~ 630 (1466)
+||+||||||||+++|..|+++|++ |+++|+.+
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~--v~i~E~~~ 34 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGID--VTIIERRP 34 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCE--EEEEESSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccc--cccchhcc
Confidence 5899999999999999999999998 77777764
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00044 Score=85.03 Aligned_cols=54 Identities=13% Similarity=0.241 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccc
Q psy2951 776 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTV 833 (1466)
Q Consensus 776 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 833 (1466)
..+...+.+.+++.|++++.++.|++++.+ ....+.+.+| ++.+|.||+|+|.-
T Consensus 183 ~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~---~~~~v~t~~g-~v~A~~VV~Atga~ 236 (460)
T TIGR03329 183 GLLVRGLRRVALELGVEIHENTPMTGLEEG---QPAVVRTPDG-QVTADKVVLALNAW 236 (460)
T ss_pred HHHHHHHHHHHHHcCCEEECCCeEEEEeeC---CceEEEeCCc-EEECCEEEEccccc
Confidence 456677888889999999999999999842 2235667666 69999999999854
|
This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW. |
| >PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00016 Score=87.38 Aligned_cols=109 Identities=18% Similarity=0.290 Sum_probs=67.7
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCC---------------------Cccchh--------c-
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR---------------------VKLSKQ--------L- 643 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~---------------------~~~~~~--------~- 643 (1466)
..+||+||||||||+++|..|++.|++ |+++|+.+...+.. ..+... +
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~--V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~ 81 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFS--VAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYR 81 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCE--EEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccc
Confidence 458999999999999999999999988 77777653211100 000000 0
Q ss_pred --------c----cCcccc--------c------ccCHhHhhhC-CcEEEEceEEEEeccc-cccEEEccCCCEEecCEE
Q psy2951 644 --------D----IKADSI--------L------LRTEEFYKDN-DIHVIKGKKIISDSEL-NEKKIKLQDGTSIDFTKI 695 (1466)
Q Consensus 644 --------~----~~~~~~--------~------~~~~~~~~~~-gv~~~~~~~v~~i~~~-~~~~v~~~~~~~~~~d~l 695 (1466)
. .+.... + ..+.+.+.+. +++++.++++..+... +...+.++++.++++|.|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~v 161 (391)
T PRK08020 82 RLETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLV 161 (391)
T ss_pred eEEEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEE
Confidence 0 000000 0 0111223344 8999999888887322 234566677889999999
Q ss_pred EEcCCCCCC
Q psy2951 696 YLATGSSPR 704 (1466)
Q Consensus 696 viAtG~~~~ 704 (1466)
|.|.|....
T Consensus 162 I~AdG~~S~ 170 (391)
T PRK08020 162 IGADGANSQ 170 (391)
T ss_pred EEeCCCCch
Confidence 999996543
|
|
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00019 Score=87.59 Aligned_cols=38 Identities=24% Similarity=0.400 Sum_probs=34.1
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCC
Q psy2951 1064 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFL 1103 (1466)
Q Consensus 1064 ~~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~ 1103 (1466)
....+|+|||||+||+++|..|++.|+ +|+|||+.+..
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~~~ 53 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDSGL--RIALIEAQPAE 53 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcCCC--EEEEEecCCcc
Confidence 346789999999999999999999999 99999998653
|
|
| >TIGR02028 ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00019 Score=86.10 Aligned_cols=33 Identities=36% Similarity=0.677 Sum_probs=29.2
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC
Q psy2951 596 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 630 (1466)
Q Consensus 596 ~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~ 630 (1466)
+||+||||||||++||+.|+++|++ |+++|+..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~--V~llE~~~ 33 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQ--TFLLERKP 33 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCc--EEEEecCC
Confidence 5899999999999999999999998 77777653
|
This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll. |
| >TIGR02023 BchP-ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00018 Score=86.44 Aligned_cols=32 Identities=41% Similarity=0.680 Sum_probs=29.0
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCC
Q psy2951 596 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE 629 (1466)
Q Consensus 596 ~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~ 629 (1466)
+||+||||||||+++|+.|++.|++ |+++|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~--V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIE--TILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCc--EEEEECC
Confidence 5899999999999999999999988 7777765
|
This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ). |
| >PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A | Back alignment and domain information |
|---|
Probab=97.63 E-value=4.1e-05 Score=92.67 Aligned_cols=101 Identities=18% Similarity=0.320 Sum_probs=30.0
Q ss_pred eEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCc-----cch-------------hc---------------
Q psy2951 597 TFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK-----LSK-------------QL--------------- 643 (1466)
Q Consensus 597 ~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~-----~~~-------------~~--------------- 643 (1466)
|||||||||||++||+.+++.|.+ |+++|+.+++++.... ... .+
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~--VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~ 78 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAK--VLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDR 78 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS---EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-----------
T ss_pred CEEEECccHHHHHHHHHHHHCCCE--EEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccc
Confidence 799999999999999999999998 8999998776532111 000 00
Q ss_pred -------ccCcccccccCHhHhhhCCcEEEEceEEEEecccccc---EEEccC---CCEEecCEEEEcCC
Q psy2951 644 -------DIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEK---KIKLQD---GTSIDFTKIYLATG 700 (1466)
Q Consensus 644 -------~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~---~v~~~~---~~~~~~d~lviAtG 700 (1466)
..++......+.+.+.+.|+++++++.+..+ ..++. .|.+.+ ..++.++.+|-|||
T Consensus 79 ~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v-~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG 147 (428)
T PF12831_consen 79 YGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDV-IRDGGRITGVIVETKSGRKEIRAKVFIDATG 147 (428)
T ss_dssp ----------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 0111112222345566779999999998887 44432 233332 46899999999999
|
|
| >PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00032 Score=80.87 Aligned_cols=95 Identities=22% Similarity=0.345 Sum_probs=71.3
Q ss_pred eEEEEcCCHHHHHHHHHHhcCCCeEEEEcCC-CcC----C----------------------------------------
Q psy2951 1207 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRG-AVP----F---------------------------------------- 1241 (1466)
Q Consensus 1207 ~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~-~~~----~---------------------------------------- 1241 (1466)
+|+|||+|..|+|+|.++++.|.+|.++... +.. .
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 5899999999999999999999999999422 111 0
Q ss_pred --cc------ccc-HHHHHHHHHHHHh-CCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeecc
Q psy2951 1242 --QE------SLG-KEVGERITKLFES-KGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGT 1303 (1466)
Q Consensus 1242 --~~------~~~-~~~~~~l~~~~~~-~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~ 1303 (1466)
+. +.+ ..+.+++.+.+++ .+++++ ..+|+++. .+++++.+|.+.+|+++.+|.||+|||.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~-~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLI-VENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEE-ECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEE-ecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 00 011 3456677777877 688886 67899997 5778999999999999999999999998
|
Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A. |
| >COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00012 Score=86.15 Aligned_cols=39 Identities=15% Similarity=0.294 Sum_probs=35.5
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCC
Q psy2951 596 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY 634 (1466)
Q Consensus 596 ~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~ 634 (1466)
++|+|||||+|||+||++|++++.+++++++|+++..++
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG 39 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGG 39 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCc
Confidence 579999999999999999999998888999999877664
|
|
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00013 Score=88.02 Aligned_cols=38 Identities=24% Similarity=0.377 Sum_probs=33.1
Q ss_pred CCCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcC
Q psy2951 39 SSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITD 76 (1466)
Q Consensus 39 ~~~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~ 76 (1466)
|.++.+||+||||||+|+++|..|++.|.++.|+|...
T Consensus 3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~ 40 (388)
T PRK07494 3 MEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEP 40 (388)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 44556899999999999999999999999998887654
|
|
| >PLN00093 geranylgeranyl diphosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00021 Score=86.55 Aligned_cols=38 Identities=39% Similarity=0.501 Sum_probs=33.1
Q ss_pred CCCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcC
Q psy2951 39 SSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITD 76 (1466)
Q Consensus 39 ~~~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~ 76 (1466)
++..++||+||||||||++||..|++.|++|.|+|...
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 34456899999999999999999999999998887653
|
|
| >PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00018 Score=85.57 Aligned_cols=107 Identities=21% Similarity=0.245 Sum_probs=63.9
Q ss_pred eEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCC--CCc------cc---hhcc---------------------
Q psy2951 597 TFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD--RVK------LS---KQLD--------------------- 644 (1466)
Q Consensus 597 ~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~--~~~------~~---~~~~--------------------- 644 (1466)
||+||||||||+++|+.|++......|+++|++...++. ..+ +. ....
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~ 80 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP 80 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence 799999999999999999444444458999876544211 100 00 0000
Q ss_pred ---cCcccccccCHhHhhhCCcEEEEceEEEEeccccc-cEEEccCCCEEecCEEEEcCCCCCC
Q psy2951 645 ---IKADSILLRTEEFYKDNDIHVIKGKKIISDSELNE-KKIKLQDGTSIDFTKIYLATGSSPR 704 (1466)
Q Consensus 645 ---~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~-~~v~~~~~~~~~~d~lviAtG~~~~ 704 (1466)
.+...+...+.+.+...++ .+.+++|.++..... ..+.+++|.+++++.||-|+|..+.
T Consensus 81 Y~~i~~~~f~~~l~~~~~~~~~-~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 81 YCMIDRADFYEFLLERAAAGGV-IRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred eEEEEHHHHHHHHHHHhhhCCe-EEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence 0000111111222332344 556666988833333 4677888999999999999995544
|
Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process |
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0003 Score=83.75 Aligned_cols=106 Identities=15% Similarity=0.205 Sum_probs=66.0
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCC--C-------------CCccchhc-------------ccC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY--D-------------RVKLSKQL-------------DIK 646 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~--~-------------~~~~~~~~-------------~~~ 646 (1466)
+++|+|||||++|+++|..|+++|++ |+++|+.+...- . ...+...+ ..+
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~--v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~ 78 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYS--VTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRD 78 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCC--EEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCC
Confidence 46899999999999999999999998 666666532110 0 00000000 000
Q ss_pred c------------------ccc---cccCHhHhh---hCCcEEEEceEEEEeccc-cccEEEccCCCEEecCEEEEcCCC
Q psy2951 647 A------------------DSI---LLRTEEFYK---DNDIHVIKGKKIISDSEL-NEKKIKLQDGTSIDFTKIYLATGS 701 (1466)
Q Consensus 647 ~------------------~~~---~~~~~~~~~---~~gv~~~~~~~v~~i~~~-~~~~v~~~~~~~~~~d~lviAtG~ 701 (1466)
. ..+ ...+.+.+. ..+++++++++|+.+... +..+++++++.++++|.||-|-|.
T Consensus 79 g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~ 158 (372)
T PRK05868 79 GNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGL 158 (372)
T ss_pred CCEEeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCC
Confidence 0 000 001112222 358999999999888322 234577788889999999999995
Q ss_pred C
Q psy2951 702 S 702 (1466)
Q Consensus 702 ~ 702 (1466)
+
T Consensus 159 ~ 159 (372)
T PRK05868 159 H 159 (372)
T ss_pred C
Confidence 4
|
|
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00029 Score=83.92 Aligned_cols=104 Identities=17% Similarity=0.265 Sum_probs=68.2
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCC-----C-CC---------CCchhhc-------------cC
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY-----D-RV---------KLSKQLD-------------IK 1117 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~-----~-~~---------~l~~~~~-------------~~ 1117 (1466)
|++|+|||||++|+++|..|++.|+ +|+|||+.+.+.- . ++ -+...+. ..
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~--~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~ 78 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGY--SVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRD 78 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCC
Confidence 4689999999999999999999999 9999998854220 0 00 0000000 00
Q ss_pred ccc------------------ccccCh---hh-h--ccCCcEEEcCCeEEEeecCCCC--eEEecCCcEEecCeEEEecC
Q psy2951 1118 ADS------------------ILLRTE---EF-Y--KDNDIHVIKGKKIISDSELNEK--KIKLQDGTSIDFTKIYLATG 1171 (1466)
Q Consensus 1118 ~~~------------------~~~~~~---~~-~--~~~~v~~~~~~~v~~i~d~~~~--~v~~~~g~~~~yd~lvlAtG 1171 (1466)
... +.+... +. . ...+++++++++|+.+ +.... +|++.+|+++++|.||-|-|
T Consensus 79 g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i-~~~~~~v~v~~~dg~~~~adlvIgADG 157 (372)
T PRK05868 79 GNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTL-QDDGDSVRVTFERAAAREFDLVIGADG 157 (372)
T ss_pred CCEEeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEE-EecCCeEEEEECCCCeEEeCEEEECCC
Confidence 000 000000 01 1 1347889999999999 65433 46778999999999999999
Q ss_pred C
Q psy2951 1172 S 1172 (1466)
Q Consensus 1172 ~ 1172 (1466)
.
T Consensus 158 ~ 158 (372)
T PRK05868 158 L 158 (372)
T ss_pred C
Confidence 6
|
|
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00081 Score=82.03 Aligned_cols=57 Identities=25% Similarity=0.397 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEcccccc
Q psy2951 776 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVL 834 (1466)
Q Consensus 776 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p 834 (1466)
..+...+.+.++++|++++.++.|++++.. ++.+..+.+.++ ++.+|.||+|+|...
T Consensus 201 ~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~t~~~-~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 201 QLFTQRLAAMAEQLGVKFRFNTPVDGLLVE-GGRITGVQTGGG-VITADAYVVALGSYS 257 (416)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCEEEEEEeCCc-EEeCCEEEECCCcch
Confidence 355667778888999999999999999843 344545666544 799999999999754
|
|
| >TIGR01377 soxA_mon sarcosine oxidase, monomeric form | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00084 Score=80.84 Aligned_cols=63 Identities=16% Similarity=0.198 Sum_probs=46.9
Q ss_pred cHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccCcccccc
Q psy2951 1246 GKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDG 1312 (1466)
Q Consensus 1246 ~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~~~~~~~ 1312 (1466)
+..+.+.|.+.+++.|++++.+++|++++ .+++. ..|.+.++ ++.+|.||+|+|.... .++..
T Consensus 144 p~~~~~~l~~~~~~~g~~~~~~~~V~~i~-~~~~~-~~v~~~~~-~i~a~~vV~aaG~~~~-~l~~~ 206 (380)
T TIGR01377 144 AEKALRALQELAEAHGATVRDGTKVVEIE-PTELL-VTVKTTKG-SYQANKLVVTAGAWTS-KLLSP 206 (380)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEE-ecCCe-EEEEeCCC-EEEeCEEEEecCcchH-HHhhh
Confidence 34667778888889999999999999998 33333 44776666 7899999999996433 34443
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >TIGR00275 flavoprotein, HI0933 family | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00013 Score=87.35 Aligned_cols=102 Identities=20% Similarity=0.331 Sum_probs=64.0
Q ss_pred EEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCC-------CCcc------c---hhc-------------------
Q psy2951 599 IVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD-------RVKL------S---KQL------------------- 643 (1466)
Q Consensus 599 vVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~-------~~~~------~---~~~------------------- 643 (1466)
+|||||+|||+||..|++.|.+ |+++|+.+..+.. ++.+ . ...
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~--V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~ 78 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLS--VLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDL 78 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCc--EEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHH
Confidence 6999999999999999999987 7777776432210 0000 0 000
Q ss_pred -------cc-----C----------cccccccCHhHhhhCCcEEEEceEEEEecccc-ccEEEccCCCEEecCEEEEcCC
Q psy2951 644 -------DI-----K----------ADSILLRTEEFYKDNDIHVIKGKKIISDSELN-EKKIKLQDGTSIDFTKIYLATG 700 (1466)
Q Consensus 644 -------~~-----~----------~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~-~~~v~~~~~~~~~~d~lviAtG 700 (1466)
+. . ..++...+.+.+++.+++++.+++|..+.... ...+.+ ++.++.+|+||+|||
T Consensus 79 ~~~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG 157 (400)
T TIGR00275 79 IDFFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATG 157 (400)
T ss_pred HHHHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCC
Confidence 00 0 01111222344566799999999898883222 233444 466899999999999
Q ss_pred CCC
Q psy2951 701 SSP 703 (1466)
Q Consensus 701 ~~~ 703 (1466)
...
T Consensus 158 ~~s 160 (400)
T TIGR00275 158 GLS 160 (400)
T ss_pred Ccc
Confidence 643
|
The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae. |
| >COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00013 Score=85.72 Aligned_cols=37 Identities=16% Similarity=0.372 Sum_probs=34.2
Q ss_pred cEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy2951 1068 TFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP 1104 (1466)
Q Consensus 1068 ~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~ 1104 (1466)
+|+|||||+|||+||++|++++.+.+|+|+|+++..+
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~G 38 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVG 38 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCC
Confidence 6999999999999999999999777999999997655
|
|
| >PLN02612 phytoene desaturase | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00077 Score=84.45 Aligned_cols=57 Identities=19% Similarity=0.311 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEcccc
Q psy2951 776 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGT 832 (1466)
Q Consensus 776 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 832 (1466)
..+.+.+.+.+++.|.++++++.|++|+..+++.+..+.+.+|+++.+|.||++++.
T Consensus 308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~ 364 (567)
T PLN02612 308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV 364 (567)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH
Confidence 456677888888899999999999999865566566678888989999999999753
|
|
| >PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00013 Score=88.12 Aligned_cols=36 Identities=28% Similarity=0.396 Sum_probs=31.7
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcC
Q psy2951 41 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITD 76 (1466)
Q Consensus 41 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~ 76 (1466)
...+||+||||||||+++|..|++.|+++.|+|...
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 346899999999999999999999999988887543
|
|
| >TIGR01789 lycopene_cycl lycopene cyclase | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00023 Score=84.26 Aligned_cols=103 Identities=22% Similarity=0.327 Sum_probs=66.5
Q ss_pred cEEEECCchHHHHHHHHHHhc--CCCCcEEEEcCCCCCCCCCCC------Cchh--------hccCcccccccC------
Q psy2951 1068 TFIVVGGGPSGATCVETLRQN--GFTGKLYFITDENFLPYDRVK------LSKQ--------LDIKADSILLRT------ 1125 (1466)
Q Consensus 1068 ~vvIVG~G~aGl~aA~~L~~~--g~~~~i~li~~~~~~~~~~~~------l~~~--------~~~~~~~~~~~~------ 1125 (1466)
+|+|||||+||+++|.+|++. |. +|.|+|+.+..+.++.. +... .........+..
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~--~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~ 78 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDF--RIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRK 78 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCC--eEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhh
Confidence 589999999999999999987 77 99999998754432221 1100 000000000000
Q ss_pred ----------hhh----hccCCcEEEcCCeEEEeecCCCCeEEecCCcEEecCeEEEecCCCCC
Q psy2951 1126 ----------EEF----YKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPR 1175 (1466)
Q Consensus 1126 ----------~~~----~~~~~v~~~~~~~v~~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~~~ 1175 (1466)
.++ .+..+..++++++|..+ +++. |++.+|.++++|.||-|.|..+.
T Consensus 79 l~~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v-~~~~--v~l~dg~~~~A~~VI~A~G~~s~ 139 (370)
T TIGR01789 79 LKTAYRSMTSTRFHEGLLQAFPEGVILGRKAVGL-DADG--VDLAPGTRINARSVIDCRGFKPS 139 (370)
T ss_pred cCCCceEEEHHHHHHHHHHhhcccEEecCEEEEE-eCCE--EEECCCCEEEeeEEEECCCCCCC
Confidence 011 11123336668889999 7653 77789999999999999997654
|
This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium. |
| >KOG2415|consensus | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00053 Score=75.98 Aligned_cols=46 Identities=15% Similarity=0.257 Sum_probs=36.7
Q ss_pred CCCCCCeEEEEcCchHHHHHHHHHHHc----CCCccEEEEcCCCCCCCCC
Q psy2951 591 SSGNKDTFIVVGGGPSGATCVETLRQN----GFTGKLYFITDENFLPYDR 636 (1466)
Q Consensus 591 ~~~~~~~vvVIGgG~AGl~aA~~l~~~----g~~~~v~~~~~~~~~~~~~ 636 (1466)
......||+|||||||||+||.+|+++ +.+..|.++|+...++.+.
T Consensus 72 R~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Gght 121 (621)
T KOG2415|consen 72 RESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHT 121 (621)
T ss_pred hhhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCce
Confidence 344568999999999999999999874 5567788999987666543
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00022 Score=85.65 Aligned_cols=105 Identities=18% Similarity=0.243 Sum_probs=63.4
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCC--C-------------Cccchh----------cc---cCc
Q psy2951 596 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD--R-------------VKLSKQ----------LD---IKA 647 (1466)
Q Consensus 596 ~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~--~-------------~~~~~~----------~~---~~~ 647 (1466)
++|+||||||||+++|..|++.|++ ++++|+.+..... . ..+... +. ...
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~--v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g 78 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHE--VKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKG 78 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCc--EEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCC
Confidence 4899999999999999999999998 6666665421100 0 000000 00 000
Q ss_pred cccc---------------ccCHhHhhh--CCcEEEEceEEEEeccc-cccEEEccCCCEEecCEEEEcCCCC
Q psy2951 648 DSIL---------------LRTEEFYKD--NDIHVIKGKKIISDSEL-NEKKIKLQDGTSIDFTKIYLATGSS 702 (1466)
Q Consensus 648 ~~~~---------------~~~~~~~~~--~gv~~~~~~~v~~i~~~-~~~~v~~~~~~~~~~d~lviAtG~~ 702 (1466)
..+. ..+.+.+.+ .+.+++++++|+++... ....++++++.++.+|.||-|.|..
T Consensus 79 ~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~ 151 (373)
T PRK06753 79 TLLNKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIH 151 (373)
T ss_pred CEEeecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcc
Confidence 0000 001112222 14578999999988322 2335667788899999999999954
|
|
| >TIGR01789 lycopene_cycl lycopene cyclase | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0003 Score=83.20 Aligned_cols=103 Identities=22% Similarity=0.304 Sum_probs=62.9
Q ss_pred eEEEEcCchHHHHHHHHHHHc--CCCccEEEEcCCCCCCCCCCc------cchh--------cccCcc--cccc------
Q psy2951 597 TFIVVGGGPSGATCVETLRQN--GFTGKLYFITDENFLPYDRVK------LSKQ--------LDIKAD--SILL------ 652 (1466)
Q Consensus 597 ~vvVIGgG~AGl~aA~~l~~~--g~~~~v~~~~~~~~~~~~~~~------~~~~--------~~~~~~--~~~~------ 652 (1466)
||+|||||+||+++|..|++. |++ |.++|+.+..+.+..+ +... ...... .+..
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~--V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~ 78 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFR--IRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRK 78 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCe--EEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhh
Confidence 699999999999999999987 777 8888886533321111 1100 000000 0000
Q ss_pred -----------cCHhH-hhhCCcEEEEceEEEEeccccccEEEccCCCEEecCEEEEcCCCCCC
Q psy2951 653 -----------RTEEF-YKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPR 704 (1466)
Q Consensus 653 -----------~~~~~-~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~ 704 (1466)
.+.+. ++..+..++++++|..+ +.+. +++++|.++.+|.||-|.|..+.
T Consensus 79 l~~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v-~~~~--v~l~dg~~~~A~~VI~A~G~~s~ 139 (370)
T TIGR01789 79 LKTAYRSMTSTRFHEGLLQAFPEGVILGRKAVGL-DADG--VDLAPGTRINARSVIDCRGFKPS 139 (370)
T ss_pred cCCCceEEEHHHHHHHHHHhhcccEEecCEEEEE-eCCE--EEECCCCEEEeeEEEECCCCCCC
Confidence 00111 12223346668778888 5443 55678899999999999997654
|
This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium. |
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00022 Score=86.18 Aligned_cols=46 Identities=13% Similarity=0.268 Sum_probs=35.1
Q ss_pred hCCcEEEEceEEEEeccc-cccEEEccCCCEEecCEEEEcCCCCCCc
Q psy2951 660 DNDIHVIKGKKIISDSEL-NEKKIKLQDGTSIDFTKIYLATGSSPRT 705 (1466)
Q Consensus 660 ~~gv~~~~~~~v~~i~~~-~~~~v~~~~~~~~~~d~lviAtG~~~~~ 705 (1466)
..|++++.+++|+++... +...+.++++.++.+|.||.|.|.....
T Consensus 123 ~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~v 169 (392)
T PRK09126 123 QDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFSAT 169 (392)
T ss_pred CCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCchh
Confidence 358999999999888322 2345666788899999999999965443
|
|
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00023 Score=85.89 Aligned_cols=35 Identities=26% Similarity=0.562 Sum_probs=30.5
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 630 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~ 630 (1466)
..+||+||||||+|+++|..|++.|.+ |+++|+.+
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~~G~~--v~liE~~~ 40 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALARAGAS--VALVAPEP 40 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCe--EEEEeCCC
Confidence 357999999999999999999999988 77777754
|
|
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00029 Score=85.69 Aligned_cols=35 Identities=23% Similarity=0.431 Sum_probs=30.5
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 630 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~ 630 (1466)
..+||+|||||++|+++|..|++.|++ |+++|+.+
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~--v~liE~~~ 39 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVD--VTVLEKHA 39 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCc--EEEEecCC
Confidence 458999999999999999999999988 67777653
|
|
| >TIGR03171 soxL2 Rieske iron-sulfur protein SoxL2 | Back alignment and domain information |
|---|
Probab=97.56 E-value=7.8e-05 Score=80.75 Aligned_cols=62 Identities=19% Similarity=0.349 Sum_probs=49.8
Q ss_pred hhhhhhcCCCCCCCccccce------e-------------e-------c-----CCEEEcCCCCceeecCC-CccccCCC
Q psy2951 976 RNIYAVGTKCSHYGAPLVKG------S-------------L-------G-----DGRVRCPWHGACFNIAT-GDIEDFPG 1023 (1466)
Q Consensus 976 g~~~a~~~~C~h~g~~l~~g------~-------------~-------~-----~~~~~cp~h~~~f~~~~-g~~~~~p~ 1023 (1466)
+.++|.+..|+|.||++..- . + . .+.+.||||+++||+.+ |+++..|+
T Consensus 176 ~~IVAyS~IC~H~GC~~~~~~~Ypp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CPCHgS~FD~~~gg~Vv~GPA 255 (321)
T TIGR03171 176 KSIVAYSAICQHLGCTPPYIHFYPPNYVNPSQLTAPEPDQLTAQALLAAKQANVPALIHCDCHGSTYDPYHGAAVLTGPT 255 (321)
T ss_pred CCEEEEecccCcCCCCcchhhccCcccccccccccccccccchhhhhhhhccCCCCeEECCCCCCEECCCCCCceeCCCC
Confidence 45788899999999977210 0 0 0 14899999999999988 58999999
Q ss_pred CCCCCeEEEEEEcC
Q psy2951 1024 MDSLPCYKVTIQND 1037 (1466)
Q Consensus 1024 ~~~l~~~~v~~~~~ 1037 (1466)
..+|+.++++++.+
T Consensus 256 ~rpLp~i~l~~d~~ 269 (321)
T TIGR03171 256 VRPLPAVILEWDSS 269 (321)
T ss_pred CCCCCcceEEEeCC
Confidence 99999999999654
|
This iron-sulfur protein is found in a contiguous genomic region with subunits of cytochrome b558/566 in several archaeal species, and appears to be part of a cytochrome bc1-analogous system. |
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00029 Score=85.13 Aligned_cols=35 Identities=26% Similarity=0.428 Sum_probs=31.7
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCC
Q psy2951 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE 77 (1466)
Q Consensus 43 ~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~ 77 (1466)
++||+||||||||+++|..|++.|+++.|+|....
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 37 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL 37 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 58999999999999999999999999999886553
|
|
| >TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00021 Score=86.31 Aligned_cols=104 Identities=13% Similarity=0.196 Sum_probs=0.0
Q ss_pred eEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCC-------------------------------------------
Q psy2951 597 TFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP------------------------------------------- 633 (1466)
Q Consensus 597 ~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~------------------------------------------- 633 (1466)
||+||||||||+++|+.|++.|++ |+++|+.+...
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~--v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~ 78 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLK--IALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHV 78 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCE--EEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEE
Q ss_pred -------------CCCCccchhcccCcccccccCHhHhhhCC-cEEEEceEEEEe-ccccccEEEccCCCEEecCEEEEc
Q psy2951 634 -------------YDRVKLSKQLDIKADSILLRTEEFYKDND-IHVIKGKKIISD-SELNEKKIKLQDGTSIDFTKIYLA 698 (1466)
Q Consensus 634 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-v~~~~~~~v~~i-~~~~~~~v~~~~~~~~~~d~lviA 698 (1466)
................+...+.+.+.+.+ ++++.+++|+.+ .+.....+.++++.++.+|.||.|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~a 158 (385)
T TIGR01988 79 SDGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGA 158 (385)
T ss_pred EeCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEe
Q ss_pred CCCC
Q psy2951 699 TGSS 702 (1466)
Q Consensus 699 tG~~ 702 (1466)
.|..
T Consensus 159 dG~~ 162 (385)
T TIGR01988 159 DGAN 162 (385)
T ss_pred CCCC
|
This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki |
| >PRK08274 tricarballylate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00046 Score=85.28 Aligned_cols=64 Identities=23% Similarity=0.320 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCCeEEEEc--CCC--cEEeccEEEEeecc-ccCccccc
Q psy2951 224 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANL--DNG--TTIPADLVIVGIGT-VLNTNYLD 288 (1466)
Q Consensus 224 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~--~~g--~~i~~D~Vi~a~G~-~p~~~~l~ 288 (1466)
..+...+.+.+++.|++++.+++++++..+ ++++..+.. .++ ..+.++.||+|+|- ..|.+++.
T Consensus 131 ~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~-~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~n~~~~~ 199 (466)
T PRK08274 131 KALVNALYRSAERLGVEIRYDAPVTALELD-DGRFVGARAGSAAGGAERIRAKAVVLAAGGFESNREWLR 199 (466)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCeEEEEEEEccCCceEEEECCEEEECCCCCCCCHHHHH
Confidence 556777888888999999999999998764 356666654 233 46789999999984 44555543
|
|
| >PRK06481 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00052 Score=85.08 Aligned_cols=64 Identities=19% Similarity=0.335 Sum_probs=49.1
Q ss_pred cHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEc--CCC--CeeecCEEEEeec-cccCcccc
Q psy2951 1246 GKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANL--DNG--TTIPADLVIVGIG-TVLNTNYL 1310 (1466)
Q Consensus 1246 ~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l--~~g--~~i~~D~vv~a~G-~~p~~~~~ 1310 (1466)
+..+.+.|.+.+++.|+++++++.++++. .+++++..|.+ .++ .++.+|.||+|+| +..|.+++
T Consensus 189 g~~l~~~L~~~~~~~gv~i~~~t~v~~l~-~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~m~ 257 (506)
T PRK06481 189 GGYLVDGLLKNVQERKIPLFVNADVTKIT-EKDGKVTGVKVKINGKETKTISSKAVVVTTGGFGANKDMI 257 (506)
T ss_pred hHHHHHHHHHHHHHcCCeEEeCCeeEEEE-ecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHHHH
Confidence 45677788888899999999999999998 55677766665 343 3689999999998 55554443
|
|
| >TIGR02734 crtI_fam phytoene desaturase | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00041 Score=86.67 Aligned_cols=57 Identities=25% Similarity=0.309 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccc
Q psy2951 776 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTV 833 (1466)
Q Consensus 776 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 833 (1466)
..+.+.+.+.+++.|++++.++.|++|... ++++..|.+.+|+++.+|.||++++..
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~V~~~~g~~~~ad~VI~a~~~~ 275 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETE-GGRATAVHLADGERLDADAVVSNADLH 275 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEee-CCEEEEEEECCCCEEECCEEEECCcHH
Confidence 467788888899999999999999999843 456667888899899999999998753
|
Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis. |
| >KOG2820|consensus | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00028 Score=76.60 Aligned_cols=47 Identities=19% Similarity=0.260 Sum_probs=37.9
Q ss_pred HhHhhhCCcEEEEceEEEEec----cccccEEEccCCCEEecCEEEEcCCC
Q psy2951 655 EEFYKDNDIHVIKGKKIISDS----ELNEKKIKLQDGTSIDFTKIYLATGS 701 (1466)
Q Consensus 655 ~~~~~~~gv~~~~~~~v~~i~----~~~~~~v~~~~~~~~~~d~lviAtG~ 701 (1466)
+..+++.|+.++.+++|..+. +.....|.+++|..+.++++|+++|+
T Consensus 160 ~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~Ga 210 (399)
T KOG2820|consen 160 QDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGA 210 (399)
T ss_pred HHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecH
Confidence 345667899999999998874 23455678888999999999999996
|
|
| >TIGR01377 soxA_mon sarcosine oxidase, monomeric form | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00076 Score=81.23 Aligned_cols=64 Identities=19% Similarity=0.238 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCccccccCC
Q psy2951 776 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKG 843 (1466)
Q Consensus 776 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~g 843 (1466)
..+...+.+.+++.|++++.+++|++++.. ++.+ .+.++++ ++.+|.||+|+|.... .+.+..+
T Consensus 145 ~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~-~~~~-~v~~~~~-~i~a~~vV~aaG~~~~-~l~~~~g 208 (380)
T TIGR01377 145 EKALRALQELAEAHGATVRDGTKVVEIEPT-ELLV-TVKTTKG-SYQANKLVVTAGAWTS-KLLSPLG 208 (380)
T ss_pred HHHHHHHHHHHHHcCCEEECCCeEEEEEec-CCeE-EEEeCCC-EEEeCEEEEecCcchH-HHhhhcc
Confidence 455677778888899999999999999843 3333 4666665 7999999999997533 3444433
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >PF13454 NAD_binding_9: FAD-NAD(P)-binding | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00065 Score=69.43 Aligned_cols=33 Identities=27% Similarity=0.520 Sum_probs=28.8
Q ss_pred EEEcCchHHHHHHHHHHHcC---CCccEEEEcCCCC
Q psy2951 599 IVVGGGPSGATCVETLRQNG---FTGKLYFITDENF 631 (1466)
Q Consensus 599 vVIGgG~AGl~aA~~l~~~g---~~~~v~~~~~~~~ 631 (1466)
+||||||+|++++..|.++. ...+|+++|+.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 59999999999999999984 5678999999654
|
|
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00029 Score=85.16 Aligned_cols=42 Identities=21% Similarity=0.277 Sum_probs=32.8
Q ss_pred CcEEEEceEEEEecc-ccccEEEccCCCEEecCEEEEcCCCCC
Q psy2951 662 DIHVIKGKKIISDSE-LNEKKIKLQDGTSIDFTKIYLATGSSP 703 (1466)
Q Consensus 662 gv~~~~~~~v~~i~~-~~~~~v~~~~~~~~~~d~lviAtG~~~ 703 (1466)
+++++.++++..+.. .+...+++.+++++++|.||-|.|...
T Consensus 126 ~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S 168 (400)
T PRK08013 126 DITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANS 168 (400)
T ss_pred CcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCc
Confidence 799999999988722 233456667888999999999999643
|
|
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00048 Score=82.71 Aligned_cols=106 Identities=20% Similarity=0.350 Sum_probs=68.7
Q ss_pred CcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCC-------CC-CCch-------------hhcc---------
Q psy2951 1067 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD-------RV-KLSK-------------QLDI--------- 1116 (1466)
Q Consensus 1067 ~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~-------~~-~l~~-------------~~~~--------- 1116 (1466)
.+|+|||||++|+++|..|++.|+ +|+|||+.+...+. +. .++. .+..
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~--~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~ 81 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGR--SVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRL 81 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCC--cEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceE
Confidence 589999999999999999999999 99999987522111 10 0000 0000
Q ss_pred ----C--------ccccccc-------Chh----h---h-ccCCcEEEcCCeEEEeecCC--CCeEEecCCcEEecCeEE
Q psy2951 1117 ----K--------ADSILLR-------TEE----F---Y-KDNDIHVIKGKKIISDSELN--EKKIKLQDGTSIDFTKIY 1167 (1466)
Q Consensus 1117 ----~--------~~~~~~~-------~~~----~---~-~~~~v~~~~~~~v~~i~d~~--~~~v~~~~g~~~~yd~lv 1167 (1466)
. ...+... ... + . ...+++++.+++|+++ +.+ ..+|++.+|.++.+|.||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~-~~~~~~~~v~~~~g~~~~~~lvI 160 (384)
T PRK08849 82 ETWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADL-EFSAEGNRVTLESGAEIEAKWVI 160 (384)
T ss_pred EEEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEE-EEcCCeEEEEECCCCEEEeeEEE
Confidence 0 0000000 000 0 1 1136889999999998 543 336788899999999999
Q ss_pred EecCCCCC
Q psy2951 1168 LATGSSPR 1175 (1466)
Q Consensus 1168 lAtG~~~~ 1175 (1466)
.|.|....
T Consensus 161 gADG~~S~ 168 (384)
T PRK08849 161 GADGANSQ 168 (384)
T ss_pred EecCCCch
Confidence 99998443
|
|
| >PLN02661 Putative thiazole synthesis | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00032 Score=79.57 Aligned_cols=117 Identities=12% Similarity=0.140 Sum_probs=0.0
Q ss_pred cccCCCCCCCcEEEECCchHHHHHHHHHHhc-CCCCcEEEEcCCC---------------------------CCCCCCCc
Q psy2951 35 MAKLSSGNKDTFIVVGGGPSGATCVETLRQN-GFTGKLYFITDEN---------------------------FLPYDRVK 86 (1466)
Q Consensus 35 ~~~~~~~~~~dVvIIGgG~AGl~aA~~l~~~-g~~v~i~~~~~~~---------------------------~~~~~~~~ 86 (1466)
+..++....+||+|||||+||++||+.|++. |.++.|++..... ..+|.+..
T Consensus 84 ~~~l~~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~d 163 (357)
T PLN02661 84 MTDMITYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQE 163 (357)
T ss_pred hhhhhhcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCC
Q ss_pred cchhcccCcccccccChhhhhcCCeEEEeCceEEEeccccccEEEec----------------CCcEEecCEEEEccCCC
Q psy2951 87 LSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQ----------------DGTSIDFTKIYLATGSS 150 (1466)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~----------------~~~~~~~d~lviAtG~~ 150 (1466)
-.........-.........++.+++++.++.+......++...-+. +...+.++++|+|||..
T Consensus 164 gy~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~ 243 (357)
T PLN02661 164 NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHD 243 (357)
T ss_pred CeeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCC
Q ss_pred C
Q psy2951 151 P 151 (1466)
Q Consensus 151 ~ 151 (1466)
.
T Consensus 244 g 244 (357)
T PLN02661 244 G 244 (357)
T ss_pred C
|
|
| >PRK11445 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00031 Score=83.00 Aligned_cols=33 Identities=18% Similarity=0.379 Sum_probs=28.6
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 630 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~ 630 (1466)
++||+||||||||+++|+.|++. ++ |+++|+.+
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~--V~liE~~~ 33 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MK--VIAIDKKH 33 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CC--EEEEECCC
Confidence 47999999999999999999998 76 77777654
|
|
| >KOG1671|consensus | Back alignment and domain information |
|---|
Probab=97.50 E-value=9.4e-05 Score=73.10 Aligned_cols=51 Identities=24% Similarity=0.436 Sum_probs=43.9
Q ss_pred eeCCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCC
Q psy2951 502 STTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGM 553 (1466)
Q Consensus 502 ~~~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~ 553 (1466)
..+-+.+.+...|+|.||-..++..+.+.+.|||||+.||.. |++..+|+-
T Consensus 141 vk~~ewl~~igVCThLGCVp~~~AGd~gg~~CPCHGSHYdas-GRIrkGPAP 191 (210)
T KOG1671|consen 141 VKKPEWLVVIGVCTHLGCVPIANAGDYGGYYCPCHGSHYDAS-GRIRKGPAP 191 (210)
T ss_pred ccCcceEEEEeeeccccccccccccccCceeccccccccccc-CceecCCCC
Confidence 345567888899999999999888887899999999999996 999888764
|
|
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00032 Score=85.24 Aligned_cols=37 Identities=22% Similarity=0.278 Sum_probs=32.5
Q ss_pred CCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcC
Q psy2951 40 SGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITD 76 (1466)
Q Consensus 40 ~~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~ 76 (1466)
...++||+|||||++|+++|..|++.|+++.|+|...
T Consensus 3 ~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~ 39 (407)
T PRK06185 3 EVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHA 39 (407)
T ss_pred ccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 3456899999999999999999999999999987653
|
|
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00014 Score=61.91 Aligned_cols=32 Identities=22% Similarity=0.461 Sum_probs=29.2
Q ss_pred EECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy2951 1071 VVGGGPSGATCVETLRQNGFTGKLYFITDENFLP 1104 (1466)
Q Consensus 1071 IVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~ 1104 (1466)
|||||++||++|..|++.|+ +|+|+|+.+.++
T Consensus 1 IiGaG~sGl~aA~~L~~~g~--~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGY--RVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTS--EEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCC--cEEEEecCcccC
Confidence 89999999999999999998 999999998765
|
... |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00035 Score=89.93 Aligned_cols=58 Identities=17% Similarity=0.229 Sum_probs=45.8
Q ss_pred cHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccC
Q psy2951 1246 GKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLN 1306 (1466)
Q Consensus 1246 ~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~ 1306 (1466)
+..+...+.+.+++ |++++.+++|++++ ..++.. .|.+.+|..+.+|.||+|+|....
T Consensus 407 p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~-~~~~~~-~v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 407 PAELCRALLALAGQ-QLTIHFGHEVARLE-REDDGW-QLDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred HHHHHHHHHHhccc-CcEEEeCCEeeEEE-EeCCEE-EEEECCCcEEECCEEEECCCCCcc
Confidence 45677778888888 99999999999997 333344 477888877899999999997654
|
|
| >PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00042 Score=87.06 Aligned_cols=36 Identities=25% Similarity=0.447 Sum_probs=31.0
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC
Q psy2951 593 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 630 (1466)
Q Consensus 593 ~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~ 630 (1466)
...++|+||||||+|+++|..|++.|.+ |+++|+.+
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~--v~v~Er~~ 43 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVR--VLVLERWP 43 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCc--EEEEecCC
Confidence 4568999999999999999999999988 66666653
|
|
| >PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00046 Score=82.10 Aligned_cols=107 Identities=22% Similarity=0.228 Sum_probs=57.7
Q ss_pred cEEEECCchHHHHHHHHH--HhcCCCCcEEEEcCCCCCCCCC------Cccc--hhc---ccC-------c---------
Q psy2951 45 TFIVVGGGPSGATCVETL--RQNGFTGKLYFITDENFLPYDR------VKLS--KQL---DIK-------A--------- 95 (1466)
Q Consensus 45 dVvIIGgG~AGl~aA~~l--~~~g~~v~i~~~~~~~~~~~~~------~~~~--~~~---~~~-------~--------- 95 (1466)
||+||||||||+++|.+| ++.|.+|.|++...+...+-.+ ..+. ... ... .
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~ 80 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP 80 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence 899999999999999999 5566665554433322001111 0110 000 000 0
Q ss_pred ------ccccccChhhhhcCCeEEEeCceEEEecc-ccccEEEecCCcEEecCEEEEccCCCCC
Q psy2951 96 ------DSILLRTEEFYKDNDIHVIKGKKIISDSE-LNEKKIKLQDGTSIDFTKIYLATGSSPR 152 (1466)
Q Consensus 96 ------~~~~~~~~~~~~~~~v~~~~~~~v~~~~~-~~~~~v~~~~~~~~~~d~lviAtG~~~~ 152 (1466)
..+...+.+.+...++.+ .+..+..... .....+++++|.+++++.||-|+|..+.
T Consensus 81 Y~~i~~~~f~~~l~~~~~~~~~~~-~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 81 YCMIDRADFYEFLLERAAAGGVIR-LNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred eEEEEHHHHHHHHHHHhhhCCeEE-EccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence 000111122222234444 4444443322 2335778889999999999999995543
|
Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process |
| >COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00027 Score=74.29 Aligned_cols=32 Identities=22% Similarity=0.399 Sum_probs=28.2
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCC
Q psy2951 596 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE 629 (1466)
Q Consensus 596 ~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~ 629 (1466)
.+|+|||+|+||++||+.|+..|++ |+++||.
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~--vtV~eKg 33 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGRE--VTVFEKG 33 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcE--EEEEEcC
Confidence 4699999999999999999999999 6666665
|
|
| >PLN02612 phytoene desaturase | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0016 Score=81.66 Aligned_cols=56 Identities=20% Similarity=0.316 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeec
Q psy2951 1247 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 1302 (1466)
Q Consensus 1247 ~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G 1302 (1466)
..+.+.+.+.+++.|++++++++|++|+..+++.+..+.+.+|+++.+|.||++++
T Consensus 308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p 363 (567)
T PLN02612 308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATP 363 (567)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCC
Confidence 45667788888889999999999999985455666778888999999999999875
|
|
| >PRK08132 FAD-dependent oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00048 Score=86.80 Aligned_cols=36 Identities=28% Similarity=0.577 Sum_probs=31.1
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC
Q psy2951 593 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 630 (1466)
Q Consensus 593 ~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~ 630 (1466)
+...+|+||||||+|+++|..|+++|.+ |+++|+.+
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~--v~viE~~~ 56 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGVP--VVLLDDDD 56 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCc--EEEEeCCC
Confidence 3568999999999999999999999988 66777654
|
|
| >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0004 Score=83.05 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=28.9
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE 629 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~ 629 (1466)
+.||+||||||+|+++|..|++.|++ |+++|+.
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~G~~--v~l~E~~ 33 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQKGIK--TTIFESK 33 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcCCCe--EEEecCC
Confidence 36899999999999999999999998 6667653
|
|
| >PRK11259 solA N-methyltryptophan oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0012 Score=79.27 Aligned_cols=55 Identities=16% Similarity=0.279 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCCeEEEEcCCCcEEeccEEEEeeccc
Q psy2951 224 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTV 281 (1466)
Q Consensus 224 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~~ 281 (1466)
..+...+.+.+.+.|+++++++.|+++..++ +. ..+.++++ ++.+|.||+|+|.-
T Consensus 149 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~-~~v~~~~g-~~~a~~vV~A~G~~ 203 (376)
T PRK11259 149 ELAIKAHLRLAREAGAELLFNEPVTAIEADG-DG-VTVTTADG-TYEAKKLVVSAGAW 203 (376)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEeeC-Ce-EEEEeCCC-EEEeeEEEEecCcc
Confidence 4556666777778899999999999998754 23 34666666 79999999999964
|
|
| >TIGR02028 ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00038 Score=83.65 Aligned_cols=33 Identities=39% Similarity=0.518 Sum_probs=29.9
Q ss_pred CcEEEECCchHHHHHHHHHHhcCCCCcEEEEcC
Q psy2951 44 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITD 76 (1466)
Q Consensus 44 ~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~ 76 (1466)
+||+||||||||++||+.|++.|++|.|+|...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~ 33 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKP 33 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCC
Confidence 489999999999999999999999998887543
|
This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll. |
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00045 Score=83.49 Aligned_cols=33 Identities=18% Similarity=0.443 Sum_probs=28.7
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE 629 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~ 629 (1466)
..+|+|||||+||+++|..|++.|++ |+++|+.
T Consensus 2 ~~~V~IvGgGiaGl~~A~~L~~~G~~--V~i~E~~ 34 (400)
T PRK06475 2 RGSPLIAGAGVAGLSAALELAARGWA--VTIIEKA 34 (400)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCc--EEEEecC
Confidence 37899999999999999999999998 5556654
|
|
| >TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0015 Score=79.81 Aligned_cols=69 Identities=14% Similarity=0.251 Sum_probs=48.6
Q ss_pred cHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEE---cCCC--CeeecCEEEEeeccccCccccccCCce
Q psy2951 1246 GKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAAN---LDNG--TTIPADLVIVGIGTVLNTNYLDGKGVE 1316 (1466)
Q Consensus 1246 ~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~---l~~g--~~i~~D~vv~a~G~~p~~~~~~~~gl~ 1316 (1466)
+..+...|.+.++++|++++.+++|++++..+++.+ .+. ..+| .++.+|.||+|+|.... .+++..|+.
T Consensus 177 p~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v-~v~~~~~~~g~~~~i~A~~VV~AAG~~s~-~La~~~Gi~ 250 (483)
T TIGR01320 177 FGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSW-TVTVKNTRTGGKRTLNTRFVFVGAGGGAL-PLLQKSGIP 250 (483)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeE-EEEEeeccCCceEEEECCEEEECCCcchH-HHHHHcCCC
Confidence 466788888888999999999999999983233322 233 2334 36899999999996543 455555554
|
This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase. |
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0004 Score=84.12 Aligned_cols=43 Identities=14% Similarity=0.224 Sum_probs=33.0
Q ss_pred CCcEEEEceEEEEeccc-cccEEEccCCCEEecCEEEEcCCCCC
Q psy2951 661 NDIHVIKGKKIISDSEL-NEKKIKLQDGTSIDFTKIYLATGSSP 703 (1466)
Q Consensus 661 ~gv~~~~~~~v~~i~~~-~~~~v~~~~~~~~~~d~lviAtG~~~ 703 (1466)
.|++++.+++++.+... +...++++++..+.+|.||.|.|...
T Consensus 126 ~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S 169 (395)
T PRK05732 126 PGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHS 169 (395)
T ss_pred CCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCh
Confidence 47999999989887322 23456677788899999999999654
|
|
| >TIGR02731 phytoene_desat phytoene desaturase | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00087 Score=82.59 Aligned_cols=57 Identities=18% Similarity=0.294 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCC-----eeecCEEEEeecc
Q psy2951 1247 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGT-----TIPADLVIVGIGT 1303 (1466)
Q Consensus 1247 ~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~-----~i~~D~vv~a~G~ 1303 (1466)
..+.+.+.+.+++.|+++++++.|++|+..+++++..|++.+|+ ++.+|.||+++..
T Consensus 213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~ 274 (453)
T TIGR02731 213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPV 274 (453)
T ss_pred HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence 45667788888889999999999999974455667778887765 7899999999764
|
Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway. |
| >PRK11259 solA N-methyltryptophan oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00096 Score=80.20 Aligned_cols=57 Identities=16% Similarity=0.253 Sum_probs=44.4
Q ss_pred cHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeecccc
Q psy2951 1246 GKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVL 1305 (1466)
Q Consensus 1246 ~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p 1305 (1466)
+..+...+.+.+.+.|++++.+++|+++. ..++ ...|.+++| ++.+|.||+|+|...
T Consensus 148 p~~~~~~~~~~~~~~gv~i~~~~~v~~i~-~~~~-~~~v~~~~g-~~~a~~vV~A~G~~~ 204 (376)
T PRK11259 148 PELAIKAHLRLAREAGAELLFNEPVTAIE-ADGD-GVTVTTADG-TYEAKKLVVSAGAWV 204 (376)
T ss_pred HHHHHHHHHHHHHHCCCEEECCCEEEEEE-eeCC-eEEEEeCCC-EEEeeEEEEecCcch
Confidence 35566667777888999999999999998 3333 345777777 789999999999753
|
|
| >TIGR02731 phytoene_desat phytoene desaturase | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0012 Score=81.52 Aligned_cols=57 Identities=18% Similarity=0.294 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCc-----EEecCEEEEcccc
Q psy2951 776 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGT-----TIPADLVIVGIGT 832 (1466)
Q Consensus 776 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~-----~i~~D~vi~a~G~ 832 (1466)
..+.+.+.+.+++.|.++++++.|++|...+++.+..+.+.+++ ++.+|.||+++..
T Consensus 213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~ 274 (453)
T TIGR02731 213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPV 274 (453)
T ss_pred HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence 44567778888889999999999999975555667677776655 7899999999854
|
Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway. |
| >PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00061 Score=82.09 Aligned_cols=34 Identities=18% Similarity=0.405 Sum_probs=29.5
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 630 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~ 630 (1466)
..||+||||||+|+++|..|++.|++ |+++|+.+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~--v~v~E~~~ 35 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGID--SVVLERRS 35 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCC--EEEEEcCC
Confidence 47899999999999999999999998 66666553
|
|
| >PRK08274 tricarballylate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0013 Score=81.16 Aligned_cols=57 Identities=25% Similarity=0.349 Sum_probs=45.7
Q ss_pred cHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcC--CC--CeeecCEEEEeecc
Q psy2951 1246 GKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLD--NG--TTIPADLVIVGIGT 1303 (1466)
Q Consensus 1246 ~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~--~g--~~i~~D~vv~a~G~ 1303 (1466)
+..+...|.+.+++.|++++.+++++++. .+++++..|... +| .++.++.||+|+|-
T Consensus 130 g~~l~~~l~~~~~~~gv~i~~~t~v~~l~-~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg 190 (466)
T PRK08274 130 GKALVNALYRSAERLGVEIRYDAPVTALE-LDDGRFVGARAGSAAGGAERIRAKAVVLAAGG 190 (466)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEE-ecCCeEEEEEEEccCCceEEEECCEEEECCCC
Confidence 35677778888899999999999999998 456777777663 33 36799999999984
|
|
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00033 Score=84.83 Aligned_cols=34 Identities=32% Similarity=0.406 Sum_probs=31.0
Q ss_pred CCCcEEEECCchHHHHHHHHHHhc---CCCCcEEEEc
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQN---GFTGKLYFIT 75 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~---g~~v~i~~~~ 75 (1466)
.++||+||||||||+++|+.|++. |.++.|+|..
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 468999999999999999999998 9999998863
|
|
| >PF00890 FAD_binding_2: FAD binding domain of the Pfam family | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00086 Score=81.75 Aligned_cols=60 Identities=28% Similarity=0.384 Sum_probs=46.9
Q ss_pred cHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcC---CCC--eeecCEEEEeeccccC
Q psy2951 1246 GKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLD---NGT--TIPADLVIVGIGTVLN 1306 (1466)
Q Consensus 1246 ~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~---~g~--~i~~D~vv~a~G~~p~ 1306 (1466)
+..+...+.+.+++.|++++.++.++++. .+++++.+|... +|+ ++.++.||+|+|-...
T Consensus 140 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li-~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 140 GKALIEALAKAAEEAGVDIRFNTRVTDLI-TEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHTTEEEEESEEEEEEE-EETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHHHHhhcCeeeeccceeeeEE-EeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 46788889999999999999999999998 467798888776 454 5789999999996554
|
; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A .... |
| >PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0006 Score=85.64 Aligned_cols=37 Identities=24% Similarity=0.316 Sum_probs=32.7
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCC
Q psy2951 41 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE 77 (1466)
Q Consensus 41 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~ 77 (1466)
+..+||+||||||+|+++|..|++.|.++.|+|....
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~ 44 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPT 44 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 4568999999999999999999999999999886543
|
|
| >TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364 | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0025 Score=76.17 Aligned_cols=53 Identities=25% Similarity=0.379 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhc-CcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccC
Q psy2951 776 KEVGERITKLFESK-GVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLN 835 (1466)
Q Consensus 776 ~~~~~~~~~~l~~~-gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 835 (1466)
..+...+.+.+.+. |++++.+++|.+++.+ .+.+.+| ++.+|.||+|+|...+
T Consensus 145 ~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~------~v~t~~g-~i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 145 REAIPALAAYLAEQHGVEFHWNTAVTSVETG------TVRTSRG-DVHADQVFVCPGADFE 198 (365)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCeEEEEecC------eEEeCCC-cEEeCEEEECCCCChh
Confidence 44556667766665 9999999999999732 4666666 4789999999997544
|
This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases. |
| >PRK13339 malate:quinone oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0012 Score=80.17 Aligned_cols=68 Identities=18% Similarity=0.270 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHH-hCCcEEEcCceEEEEEecCCCcEEEEE---cCCCC--eeecCEEEEeeccccCccccccCCce
Q psy2951 1247 KEVGERITKLFE-SKGVKFVMKANVSSFEKNEKNDVTAAN---LDNGT--TIPADLVIVGIGTVLNTNYLDGKGVE 1316 (1466)
Q Consensus 1247 ~~~~~~l~~~~~-~~gv~~~~~~~v~~i~~~~~g~~~~v~---l~~g~--~i~~D~vv~a~G~~p~~~~~~~~gl~ 1316 (1466)
..+.+.|.+.+. ..|++++++++|+.+...+++.. .+. ..+|+ ++.+|.||+|.|.... .+++.+|+.
T Consensus 184 ~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w-~v~v~~t~~g~~~~i~Ad~VV~AAGawS~-~La~~~Gi~ 257 (497)
T PRK13339 184 GALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGW-EVTVKDRNTGEKREQVADYVFIGAGGGAI-PLLQKSGIP 257 (497)
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCE-EEEEEecCCCceEEEEcCEEEECCCcchH-HHHHHcCCC
Confidence 456667767665 45999999999999973324332 233 34453 6899999999997664 566666554
|
|
| >PRK06481 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00077 Score=83.56 Aligned_cols=36 Identities=17% Similarity=0.375 Sum_probs=31.9
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENF 631 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~ 631 (1466)
...||||||+|.||++||+.+++.|.+ |+++|+.+.
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~--VivlEK~~~ 95 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMN--PVILEKMPV 95 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCC--EEEEECCCC
Confidence 468999999999999999999999987 788887654
|
|
| >TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364 | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0029 Score=75.67 Aligned_cols=54 Identities=24% Similarity=0.356 Sum_probs=41.5
Q ss_pred cHHHHHHHHHHHHhC-CcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccC
Q psy2951 1246 GKEVGERITKLFESK-GVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLN 1306 (1466)
Q Consensus 1246 ~~~~~~~l~~~~~~~-gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~ 1306 (1466)
+..+...|.+.++++ |++++.+++|.+++ . + .|.+.+| ++.||.||+|+|...+
T Consensus 144 p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~-~-~----~v~t~~g-~i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 144 PREAIPALAAYLAEQHGVEFHWNTAVTSVE-T-G----TVRTSRG-DVHADQVFVCPGADFE 198 (365)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCCeEEEEe-c-C----eEEeCCC-cEEeCEEEECCCCChh
Confidence 345667777777765 99999999999997 2 2 4777777 4789999999997543
|
This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases. |
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00073 Score=81.32 Aligned_cols=101 Identities=22% Similarity=0.293 Sum_probs=72.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcc-----cccHHHHHHHH-------------------------
Q psy2951 1205 ESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQE-----SLGKEVGERIT------------------------- 1254 (1466)
Q Consensus 1205 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~-----~~~~~~~~~l~------------------------- 1254 (1466)
..+|+|||+|..|+.+|..|++.|.+|+++++.+.++.. .+.+...+.|.
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g~ 85 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDGR 85 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCCC
Confidence 478999999999999999999999999999988643211 11222222222
Q ss_pred ------------------HHHHh--CCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccCc
Q psy2951 1255 ------------------KLFES--KGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNT 1307 (1466)
Q Consensus 1255 ------------------~~~~~--~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~~ 1307 (1466)
+.+.+ .+++++.++++++++ .++ ....|.+.+|+++.+|+||.|-|.....
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~-~~~-~~v~v~~~~g~~~~ad~vIgADG~~S~v 156 (386)
T PRK07236 86 VVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFE-QDG-DRVTARFADGRRETADLLVGADGGRSTV 156 (386)
T ss_pred EeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEE-ecC-CeEEEEECCCCEEEeCEEEECCCCCchH
Confidence 11111 135689999999998 333 3355889999999999999999976654
|
|
| >PTZ00383 malate:quinone oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0012 Score=80.51 Aligned_cols=67 Identities=16% Similarity=0.273 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHh----cC--cEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCccccccCCce
Q psy2951 776 KEVGERITKLFES----KG--VKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVE 845 (1466)
Q Consensus 776 ~~~~~~~~~~l~~----~g--v~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~ 845 (1466)
..+...+.+.+++ .| ++++++++|+.++.. ++....|.+++| ++.+|.||+|+|.-.. .+++.+|+.
T Consensus 211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~-~~~~~~V~T~~G-~i~A~~VVvaAG~~S~-~La~~~Gi~ 283 (497)
T PTZ00383 211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERS-NDSLYKIHTNRG-EIRARFVVVSACGYSL-LFAQKMGYG 283 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEec-CCCeEEEEECCC-EEEeCEEEECcChhHH-HHHHHhCCC
Confidence 3566777777777 77 889999999999853 234556777776 6999999999996543 456666653
|
|
| >PRK06126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00069 Score=85.53 Aligned_cols=35 Identities=23% Similarity=0.508 Sum_probs=30.3
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCC
Q psy2951 593 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE 629 (1466)
Q Consensus 593 ~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~ 629 (1466)
+..++|+||||||+||++|..|+++|++ |+++|+.
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~--v~viEr~ 39 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVD--SILVERK 39 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCc--EEEEeCC
Confidence 3468999999999999999999999998 6666665
|
|
| >PRK05257 malate:quinone oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.002 Score=78.83 Aligned_cols=68 Identities=18% Similarity=0.386 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhCC-cEEEcCceEEEEEecCCCcEEEEE---cCCCC--eeecCEEEEeeccccCccccccCCce
Q psy2951 1247 KEVGERITKLFESKG-VKFVMKANVSSFEKNEKNDVTAAN---LDNGT--TIPADLVIVGIGTVLNTNYLDGKGVE 1316 (1466)
Q Consensus 1247 ~~~~~~l~~~~~~~g-v~~~~~~~v~~i~~~~~g~~~~v~---l~~g~--~i~~D~vv~a~G~~p~~~~~~~~gl~ 1316 (1466)
..+.+.|.+.+++.| ++++++++|++++..+++.+ .|. +.+|. ++.||.||+|+|.... .+++..|+.
T Consensus 183 ~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~-~v~~~~~~~G~~~~i~A~~VVvaAGg~s~-~L~~~~Gi~ 256 (494)
T PRK05257 183 GALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSW-TVTVKDLKTGEKRTVRAKFVFIGAGGGAL-PLLQKSGIP 256 (494)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCE-EEEEEEcCCCceEEEEcCEEEECCCcchH-HHHHHcCCC
Confidence 567778888888886 89999999999984344332 233 33464 6899999999997543 455555554
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00078 Score=86.73 Aligned_cols=57 Identities=16% Similarity=0.241 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccC
Q psy2951 776 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLN 835 (1466)
Q Consensus 776 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 835 (1466)
..+...+.+.+++ |++++.++.|++++.. ++.+ .+.++++..+.+|.||+|+|....
T Consensus 408 ~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~-~~~~-~v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 408 AELCRALLALAGQ-QLTIHFGHEVARLERE-DDGW-QLDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred HHHHHHHHHhccc-CcEEEeCCEeeEEEEe-CCEE-EEEECCCcEEECCEEEECCCCCcc
Confidence 4666777777778 9999999999999743 3334 477778877899999999997543
|
|
| >PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00057 Score=82.82 Aligned_cols=110 Identities=15% Similarity=0.221 Sum_probs=0.0
Q ss_pred CCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCC--------------------------------------
Q psy2951 1063 SGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP-------------------------------------- 1104 (1466)
Q Consensus 1063 ~~~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~-------------------------------------- 1104 (1466)
++...+|+|||||++|+++|..|++.|+ +|+|||+.+..+
T Consensus 1 ~m~~~dV~IvGaG~~Gl~~A~~L~~~G~--~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~ 78 (405)
T PRK08850 1 MMQSVDVAIIGGGMVGLALAAALKESDL--RIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPY 78 (405)
T ss_pred CCCcCCEEEECccHHHHHHHHHHHhCCC--EEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcc
Q ss_pred ---------------CCCCCCchhhc---cCcccccccChhhhccC-CcEEEcCCeEEEeecCCCC--eEEecCCcEEec
Q psy2951 1105 ---------------YDRVKLSKQLD---IKADSILLRTEEFYKDN-DIHVIKGKKIISDSELNEK--KIKLQDGTSIDF 1163 (1466)
Q Consensus 1105 ---------------~~~~~l~~~~~---~~~~~~~~~~~~~~~~~-~v~~~~~~~v~~i~d~~~~--~v~~~~g~~~~y 1163 (1466)
|+......... .....+.....+...+. +++++.+++|+.+ +.... .|.+++|+++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i-~~~~~~~~v~~~~g~~~~a 157 (405)
T PRK08850 79 IAMEVWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSI-AVGESEAWLTLDNGQALTA 157 (405)
T ss_pred cEEEEEeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEE-EeeCCeEEEEECCCCEEEe
Q ss_pred CeEEEecCCCCC
Q psy2951 1164 TKIYLATGSSPR 1175 (1466)
Q Consensus 1164 d~lvlAtG~~~~ 1175 (1466)
|.||.|.|....
T Consensus 158 ~lvIgADG~~S~ 169 (405)
T PRK08850 158 KLVVGADGANSW 169 (405)
T ss_pred CEEEEeCCCCCh
|
|
| >PRK05257 malate:quinone oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0029 Score=77.52 Aligned_cols=68 Identities=18% Similarity=0.386 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhcC-cEEEccceEEEEEecCCCceEEEE---CCCCc--EEecCEEEEccccccCccccccCCce
Q psy2951 776 KEVGERITKLFESKG-VKFVMKANVSSFEKNEKNDVTAAN---LDNGT--TIPADLVIVGIGTVLNTNYLDGKGVE 845 (1466)
Q Consensus 776 ~~~~~~~~~~l~~~g-v~~~~~~~v~~i~~~~~~~~~~v~---~~~g~--~i~~D~vi~a~G~~p~~~~~~~~gl~ 845 (1466)
..+.+.+.+.+++.| ++++.+++|++++..+++.+ .+. +.+|+ ++.+|.||+|.|.-.. .+++.+|+.
T Consensus 183 ~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~-~v~~~~~~~G~~~~i~A~~VVvaAGg~s~-~L~~~~Gi~ 256 (494)
T PRK05257 183 GALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSW-TVTVKDLKTGEKRTVRAKFVFIGAGGGAL-PLLQKSGIP 256 (494)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCE-EEEEEEcCCCceEEEEcCEEEECCCcchH-HHHHHcCCC
Confidence 456677778888876 99999999999985444433 233 33453 6899999999997543 456655554
|
|
| >COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00019 Score=83.14 Aligned_cols=107 Identities=20% Similarity=0.258 Sum_probs=65.3
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCC-----CCC-------------------------------CCCCc
Q psy2951 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN-----FLP-------------------------------YDRVK 86 (1466)
Q Consensus 43 ~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~-----~~~-------------------------------~~~~~ 86 (1466)
.+||+|||||.||..||...++.|.++.++...-+. +.| |....
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN 83 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLN 83 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhcc
Confidence 589999999999999999999999998777554432 111 00000
Q ss_pred cchhc--c---cCcc--cccccChhhhh-cCCeEEEeCceEEEeccccc--cEEEecCCcEEecCEEEEccCC
Q psy2951 87 LSKQL--D---IKAD--SILLRTEEFYK-DNDIHVIKGKKIISDSELNE--KKIKLQDGTSIDFTKIYLATGS 149 (1466)
Q Consensus 87 ~~~~~--~---~~~~--~~~~~~~~~~~-~~~v~~~~~~~v~~~~~~~~--~~v~~~~~~~~~~d~lviAtG~ 149 (1466)
.++.- . ...+ .+.......++ ..|+.++++...-...+.+. .-|.+.+|..+.++.||++||.
T Consensus 84 ~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGT 156 (621)
T COG0445 84 SSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGT 156 (621)
T ss_pred CCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecc
Confidence 00000 0 0000 01111222222 45888888876543332232 5577889999999999999996
|
|
| >COG2907 Predicted NAD/FAD-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0024 Score=69.61 Aligned_cols=62 Identities=10% Similarity=0.093 Sum_probs=43.5
Q ss_pred cCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeec
Q psy2951 1239 VPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 1302 (1466)
Q Consensus 1239 ~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G 1302 (1466)
+|.-+.+......+++++-..-+-++.+++.|..+....+|. .+...||++-.+|.||+|+-
T Consensus 209 rp~wrtV~ggS~~yvq~laa~~~~~i~t~~~V~~l~rlPdGv--~l~~~~G~s~rFD~vViAth 270 (447)
T COG2907 209 RPTWRTVAGGSRAYVQRLAADIRGRIETRTPVCRLRRLPDGV--VLVNADGESRRFDAVVIATH 270 (447)
T ss_pred CCceeEcccchHHHHHHHhccccceeecCCceeeeeeCCCce--EEecCCCCccccceeeeecC
Confidence 444445555556667776666665689999999997544542 35556799889999999876
|
|
| >PRK11445 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00065 Score=80.33 Aligned_cols=33 Identities=15% Similarity=0.187 Sum_probs=29.2
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcC
Q psy2951 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITD 76 (1466)
Q Consensus 43 ~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~ 76 (1466)
++||+||||||||+++|..|++. ++|.|+|..+
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~ 33 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKH 33 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCC
Confidence 47999999999999999999998 8888877544
|
|
| >PRK06996 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00073 Score=81.58 Aligned_cols=111 Identities=12% Similarity=0.160 Sum_probs=66.9
Q ss_pred CCCCCCeEEEEcCchHHHHHHHHHHHcCC-C-ccEEEEcCCCCCC-C----------------CCCc-------------
Q psy2951 591 SSGNKDTFIVVGGGPSGATCVETLRQNGF-T-GKLYFITDENFLP-Y----------------DRVK------------- 638 (1466)
Q Consensus 591 ~~~~~~~vvVIGgG~AGl~aA~~l~~~g~-~-~~v~~~~~~~~~~-~----------------~~~~------------- 638 (1466)
..+..++|+||||||+|+++|..|++.|. + ..|+++|+.+... . ....
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~ 86 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIH 86 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEE
Confidence 34456899999999999999999999984 2 4478888753110 0 0000
Q ss_pred cc--hhc-----c------------cCcccccccCHhHhhhCCcEEEEceEEEEeccc-cccEEEccCC---CEEecCEE
Q psy2951 639 LS--KQL-----D------------IKADSILLRTEEFYKDNDIHVIKGKKIISDSEL-NEKKIKLQDG---TSIDFTKI 695 (1466)
Q Consensus 639 ~~--~~~-----~------------~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~-~~~~v~~~~~---~~~~~d~l 695 (1466)
.. ... . .+...+...+.+.+.+.+++++.++++..+.+. +..++++.++ +++++|.|
T Consensus 87 ~~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lv 166 (398)
T PRK06996 87 VSQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIA 166 (398)
T ss_pred EecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEE
Confidence 00 000 0 000011111223345568999999988877222 2334555543 58999999
Q ss_pred EEcCCC
Q psy2951 696 YLATGS 701 (1466)
Q Consensus 696 viAtG~ 701 (1466)
|-|.|.
T Consensus 167 IgADG~ 172 (398)
T PRK06996 167 VQAEGG 172 (398)
T ss_pred EECCCC
Confidence 999994
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1466 | ||||
| 3lb8_A | 436 | Crystal Structure Of The Covalent Putidaredoxin Red | 2e-42 | ||
| 3lb8_A | 436 | Crystal Structure Of The Covalent Putidaredoxin Red | 2e-42 | ||
| 3lb8_A | 436 | Crystal Structure Of The Covalent Putidaredoxin Red | 2e-42 | ||
| 1q1r_A | 431 | Crystal Structure Of Putidaredoxin Reductase From P | 2e-42 | ||
| 1q1r_A | 431 | Crystal Structure Of Putidaredoxin Reductase From P | 2e-42 | ||
| 1q1r_A | 431 | Crystal Structure Of Putidaredoxin Reductase From P | 2e-42 | ||
| 3lxd_A | 415 | Crystal Structure Of Ferredoxin Reductase Arr From | 1e-33 | ||
| 3fg2_P | 404 | Crystal Structure Of Ferredoxin Reductase For The C | 2e-33 | ||
| 3fg2_P | 404 | Crystal Structure Of Ferredoxin Reductase For The C | 2e-33 | ||
| 3fg2_P | 404 | Crystal Structure Of Ferredoxin Reductase For The C | 2e-33 | ||
| 1d7y_A | 408 | Crystal Structure Of Nadh-Dependent Ferredoxin Redu | 6e-27 | ||
| 1d7y_A | 408 | Crystal Structure Of Nadh-Dependent Ferredoxin Redu | 2e-26 | ||
| 2gr3_A | 408 | Crystal Structure Of Ferredoxin Reductase, Bpha4 (O | 1e-25 | ||
| 2gr3_A | 408 | Crystal Structure Of Ferredoxin Reductase, Bpha4 (O | 5e-25 | ||
| 3ef6_A | 410 | Crystal Structure Of Toluene 2,3-Dioxygenase Reduct | 1e-21 | ||
| 3ef6_A | 410 | Crystal Structure Of Toluene 2,3-Dioxygenase Reduct | 1e-21 | ||
| 3ef6_A | 410 | Crystal Structure Of Toluene 2,3-Dioxygenase Reduct | 1e-21 | ||
| 3cgc_A | 480 | Pyridine Nucleotide Complexes With Bacillus Anthrac | 1e-17 | ||
| 3cgc_A | 480 | Pyridine Nucleotide Complexes With Bacillus Anthrac | 1e-17 | ||
| 3cgc_A | 480 | Pyridine Nucleotide Complexes With Bacillus Anthrac | 1e-17 | ||
| 3cgb_A | 480 | Pyridine Nucleotide Complexes With Bacillus Anthrac | 8e-16 | ||
| 3cgb_A | 480 | Pyridine Nucleotide Complexes With Bacillus Anthrac | 8e-16 | ||
| 3cgb_A | 480 | Pyridine Nucleotide Complexes With Bacillus Anthrac | 8e-16 | ||
| 3klj_A | 385 | Crystal Structure Of Nadh:rubredoxin Oxidoreductase | 1e-15 | ||
| 3klj_A | 385 | Crystal Structure Of Nadh:rubredoxin Oxidoreductase | 1e-15 | ||
| 3klj_A | 385 | Crystal Structure Of Nadh:rubredoxin Oxidoreductase | 1e-15 | ||
| 2cdu_A | 452 | The Crystal Structure Of Water-Forming Nad(P)h Oxid | 1e-14 | ||
| 2cdu_A | 452 | The Crystal Structure Of Water-Forming Nad(P)h Oxid | 1e-14 | ||
| 2cdu_A | 452 | The Crystal Structure Of Water-Forming Nad(P)h Oxid | 1e-14 | ||
| 1zk7_A | 467 | Crystal Structure Of Tn501 Mera Length = 467 | 3e-12 | ||
| 1zk7_A | 467 | Crystal Structure Of Tn501 Mera Length = 467 | 3e-12 | ||
| 1zk7_A | 467 | Crystal Structure Of Tn501 Mera Length = 467 | 3e-12 | ||
| 1nhr_A | 447 | An L40c Mutation Converts The Cysteine-Sulfenic Aci | 6e-12 | ||
| 1nhr_A | 447 | An L40c Mutation Converts The Cysteine-Sulfenic Aci | 6e-12 | ||
| 1nhr_A | 447 | An L40c Mutation Converts The Cysteine-Sulfenic Aci | 6e-12 | ||
| 1nhp_A | 447 | Crystallographic Analyses Of Nadh Peroxidase Cys42a | 1e-11 | ||
| 1nhp_A | 447 | Crystallographic Analyses Of Nadh Peroxidase Cys42a | 1e-11 | ||
| 1nhp_A | 447 | Crystallographic Analyses Of Nadh Peroxidase Cys42a | 1e-11 | ||
| 1nhs_A | 447 | An L40c Mutation Converts The Cysteine-Sulfenic Aci | 1e-11 | ||
| 1nhs_A | 447 | An L40c Mutation Converts The Cysteine-Sulfenic Aci | 1e-11 | ||
| 1nhs_A | 447 | An L40c Mutation Converts The Cysteine-Sulfenic Aci | 1e-11 | ||
| 1joa_A | 447 | Nadh Peroxidase With Cysteine-Sulfenic Acid Length | 1e-11 | ||
| 1joa_A | 447 | Nadh Peroxidase With Cysteine-Sulfenic Acid Length | 1e-11 | ||
| 1joa_A | 447 | Nadh Peroxidase With Cysteine-Sulfenic Acid Length | 1e-11 | ||
| 1nhq_A | 447 | Crystallographic Analyses Of Nadh Peroxidase Cys42a | 1e-11 | ||
| 1nhq_A | 447 | Crystallographic Analyses Of Nadh Peroxidase Cys42a | 1e-11 | ||
| 1nhq_A | 447 | Crystallographic Analyses Of Nadh Peroxidase Cys42a | 1e-11 | ||
| 1m6i_A | 493 | Crystal Structure Of Apoptosis Inducing Factor (Aif | 2e-11 | ||
| 1m6i_A | 493 | Crystal Structure Of Apoptosis Inducing Factor (Aif | 2e-11 | ||
| 1m6i_A | 493 | Crystal Structure Of Apoptosis Inducing Factor (Aif | 2e-11 | ||
| 1f8w_A | 447 | Crystal Structure Of Nadh Peroxidase Mutant: R303m | 2e-11 | ||
| 1f8w_A | 447 | Crystal Structure Of Nadh Peroxidase Mutant: R303m | 2e-11 | ||
| 1f8w_A | 447 | Crystal Structure Of Nadh Peroxidase Mutant: R303m | 2e-11 | ||
| 4fdc_B | 514 | Crystal Structure Of The E493v Mutant Of Human Apop | 2e-11 | ||
| 4fdc_B | 514 | Crystal Structure Of The E493v Mutant Of Human Apop | 2e-11 | ||
| 4fdc_B | 514 | Crystal Structure Of The E493v Mutant Of Human Apop | 2e-11 | ||
| 1ebd_A | 455 | Dihydrolipoamide Dehydrogenase Complexed With The B | 4e-11 | ||
| 1ebd_A | 455 | Dihydrolipoamide Dehydrogenase Complexed With The B | 4e-11 | ||
| 1ebd_A | 455 | Dihydrolipoamide Dehydrogenase Complexed With The B | 4e-11 | ||
| 1gv4_A | 528 | Murine Apoptosis-Inducing Factor (Aif) Length = 528 | 2e-10 | ||
| 1gv4_A | 528 | Murine Apoptosis-Inducing Factor (Aif) Length = 528 | 2e-10 | ||
| 1gv4_A | 528 | Murine Apoptosis-Inducing Factor (Aif) Length = 528 | 2e-10 | ||
| 1dxl_A | 470 | Dihydrolipoamide Dehydrogenase Of Glycine Decarboxy | 2e-10 | ||
| 1dxl_A | 470 | Dihydrolipoamide Dehydrogenase Of Glycine Decarboxy | 2e-10 | ||
| 1dxl_A | 470 | Dihydrolipoamide Dehydrogenase Of Glycine Decarboxy | 2e-10 | ||
| 3gd3_A | 535 | Crystal Structure Of A Naturally Folded Murine Apop | 2e-10 | ||
| 3gd3_A | 535 | Crystal Structure Of A Naturally Folded Murine Apop | 2e-10 | ||
| 3gd3_A | 535 | Crystal Structure Of A Naturally Folded Murine Apop | 2e-10 | ||
| 3gd4_A | 511 | Crystal Structure Of The Reduced, Nad-Bound Form Of | 2e-10 | ||
| 3gd4_A | 511 | Crystal Structure Of The Reduced, Nad-Bound Form Of | 2e-10 | ||
| 3gd4_A | 511 | Crystal Structure Of The Reduced, Nad-Bound Form Of | 2e-10 | ||
| 3o0h_A | 484 | Crystal Structure Of Glutathione Reductase From Bar | 3e-10 | ||
| 3o0h_A | 484 | Crystal Structure Of Glutathione Reductase From Bar | 3e-10 | ||
| 3o0h_A | 484 | Crystal Structure Of Glutathione Reductase From Bar | 3e-10 | ||
| 2eq7_A | 455 | Crystal Structure Of Lipoamide Dehydrogenase From T | 2e-09 | ||
| 2eq7_A | 455 | Crystal Structure Of Lipoamide Dehydrogenase From T | 9e-09 | ||
| 2eq7_A | 455 | Crystal Structure Of Lipoamide Dehydrogenase From T | 9e-09 | ||
| 1mo9_A | 523 | Nadph Dependent 2-Ketopropyl Coenzyme M Oxidoreduct | 2e-09 | ||
| 1mo9_A | 523 | Nadph Dependent 2-Ketopropyl Coenzyme M Oxidoreduct | 2e-09 | ||
| 1mo9_A | 523 | Nadph Dependent 2-Ketopropyl Coenzyme M Oxidoreduct | 2e-09 | ||
| 1yqz_A | 438 | Structure Of Coenzyme A-Disulfide Reductase From St | 7e-09 | ||
| 1yqz_A | 438 | Structure Of Coenzyme A-Disulfide Reductase From St | 7e-09 | ||
| 1yqz_A | 438 | Structure Of Coenzyme A-Disulfide Reductase From St | 7e-09 | ||
| 4eqw_A | 437 | Crystal Structure Of The Y361f, Y419f Mutant Of Sta | 8e-09 | ||
| 4eqw_A | 437 | Crystal Structure Of The Y361f, Y419f Mutant Of Sta | 8e-09 | ||
| 4eqw_A | 437 | Crystal Structure Of The Y361f, Y419f Mutant Of Sta | 8e-09 | ||
| 4em3_A | 437 | Crystal Structure Of Staphylococcus Aureus Bound Wi | 8e-09 | ||
| 4em3_A | 437 | Crystal Structure Of Staphylococcus Aureus Bound Wi | 8e-09 | ||
| 4em3_A | 437 | Crystal Structure Of Staphylococcus Aureus Bound Wi | 8e-09 | ||
| 4eqs_A | 437 | Crystal Structure Of The Y419f Mutant Of Staphyloco | 8e-09 | ||
| 4eqs_A | 437 | Crystal Structure Of The Y419f Mutant Of Staphyloco | 8e-09 | ||
| 4eqs_A | 437 | Crystal Structure Of The Y419f Mutant Of Staphyloco | 8e-09 | ||
| 4eqr_A | 437 | Crystal Structure Of The Y361f Mutant Of Staphyloco | 8e-09 | ||
| 4eqr_A | 437 | Crystal Structure Of The Y361f Mutant Of Staphyloco | 8e-09 | ||
| 4eqr_A | 437 | Crystal Structure Of The Y361f Mutant Of Staphyloco | 8e-09 | ||
| 4emw_A | 436 | Crystal Structure Of Staphylococcus Aureus Bound Wi | 9e-09 | ||
| 4emw_A | 436 | Crystal Structure Of Staphylococcus Aureus Bound Wi | 9e-09 | ||
| 4emw_A | 436 | Crystal Structure Of Staphylococcus Aureus Bound Wi | 9e-09 | ||
| 4eqx_A | 437 | Crystal Structure Of The C43s Mutant Of Staphylococ | 1e-08 | ||
| 4eqx_A | 437 | Crystal Structure Of The C43s Mutant Of Staphylococ | 1e-08 | ||
| 4eqx_A | 437 | Crystal Structure Of The C43s Mutant Of Staphylococ | 1e-08 | ||
| 2woi_A | 495 | Trypanothione Reductase From Trypanosoma Brucei Len | 1e-08 | ||
| 2woi_A | 495 | Trypanothione Reductase From Trypanosoma Brucei Len | 1e-08 | ||
| 2woi_A | 495 | Trypanothione Reductase From Trypanosoma Brucei Len | 1e-08 | ||
| 2wba_A | 492 | Properties Of Trypanothione Reductase From T. Bruce | 1e-08 | ||
| 2wba_A | 492 | Properties Of Trypanothione Reductase From T. Bruce | 1e-08 | ||
| 2wba_A | 492 | Properties Of Trypanothione Reductase From T. Bruce | 1e-08 | ||
| 1xhc_A | 367 | Nadh Oxidase /nitrite Reductase From Pyrococcus Fur | 1e-08 | ||
| 1xhc_A | 367 | Nadh Oxidase /nitrite Reductase From Pyrococcus Fur | 1e-08 | ||
| 1xhc_A | 367 | Nadh Oxidase /nitrite Reductase From Pyrococcus Fur | 1e-08 | ||
| 1nda_A | 491 | The Structure Of Trypanosoma Cruzi Trypanothione Re | 2e-07 | ||
| 1nda_A | 491 | The Structure Of Trypanosoma Cruzi Trypanothione Re | 2e-07 | ||
| 1nda_A | 491 | The Structure Of Trypanosoma Cruzi Trypanothione Re | 2e-07 | ||
| 3iwa_A | 472 | Crystal Structure Of A Fad-Dependent Pyridine Nucle | 3e-07 | ||
| 3iwa_A | 472 | Crystal Structure Of A Fad-Dependent Pyridine Nucle | 3e-07 | ||
| 3iwa_A | 472 | Crystal Structure Of A Fad-Dependent Pyridine Nucle | 3e-07 | ||
| 3lad_A | 476 | Refined Crystal Structure Of Lipoamide Dehydrogenas | 5e-07 | ||
| 3lad_A | 476 | Refined Crystal Structure Of Lipoamide Dehydrogenas | 8e-07 | ||
| 3lad_A | 476 | Refined Crystal Structure Of Lipoamide Dehydrogenas | 8e-07 | ||
| 3icr_A | 588 | Crystal Structure Of Oxidized Bacillus Anthracis Co | 8e-07 | ||
| 3icr_A | 588 | Crystal Structure Of Oxidized Bacillus Anthracis Co | 8e-07 | ||
| 3icr_A | 588 | Crystal Structure Of Oxidized Bacillus Anthracis Co | 8e-07 | ||
| 1gxf_A | 492 | Crystal Structure Of Trypanosoma Cruzi Trypanothion | 8e-07 | ||
| 1gxf_A | 492 | Crystal Structure Of Trypanosoma Cruzi Trypanothion | 8e-07 | ||
| 1gxf_A | 492 | Crystal Structure Of Trypanosoma Cruzi Trypanothion | 8e-07 | ||
| 1bzl_A | 486 | Crystal Structure Of Trypanosoma Cruzi Trypanothion | 9e-07 | ||
| 1bzl_A | 486 | Crystal Structure Of Trypanosoma Cruzi Trypanothion | 9e-07 | ||
| 1bzl_A | 486 | Crystal Structure Of Trypanosoma Cruzi Trypanothion | 9e-07 | ||
| 1aog_A | 485 | Trypanosoma Cruzi Trypanothione Reductase (Oxidized | 1e-06 | ||
| 1aog_A | 485 | Trypanosoma Cruzi Trypanothione Reductase (Oxidized | 1e-06 | ||
| 1aog_A | 485 | Trypanosoma Cruzi Trypanothione Reductase (Oxidized | 1e-06 | ||
| 2r9z_A | 463 | Glutathione Amide Reductase From Chromatium Gracile | 1e-06 | ||
| 2r9z_A | 463 | Glutathione Amide Reductase From Chromatium Gracile | 1e-06 | ||
| 2r9z_A | 463 | Glutathione Amide Reductase From Chromatium Gracile | 1e-06 | ||
| 3dgz_A | 488 | Crystal Structure Of Mouse Mitochondrial Thioredoxi | 2e-06 | ||
| 3dgz_A | 488 | Crystal Structure Of Mouse Mitochondrial Thioredoxi | 2e-06 | ||
| 3dgz_A | 488 | Crystal Structure Of Mouse Mitochondrial Thioredoxi | 2e-06 | ||
| 1xdi_A | 499 | Crystal Structure Of Lpda (Rv3303c) From Mycobacter | 2e-06 | ||
| 1xdi_A | 499 | Crystal Structure Of Lpda (Rv3303c) From Mycobacter | 2e-06 | ||
| 1xdi_A | 499 | Crystal Structure Of Lpda (Rv3303c) From Mycobacter | 2e-06 | ||
| 1zdl_A | 517 | Crystal Structure Of Mouse Thioredoxin Reductase Ty | 2e-06 | ||
| 1zdl_A | 517 | Crystal Structure Of Mouse Thioredoxin Reductase Ty | 2e-06 | ||
| 1zdl_A | 517 | Crystal Structure Of Mouse Thioredoxin Reductase Ty | 2e-06 | ||
| 2v3a_A | 384 | Crystal Structure Of Rubredoxin Reductase From Pseu | 2e-06 | ||
| 2v3a_A | 384 | Crystal Structure Of Rubredoxin Reductase From Pseu | 2e-06 | ||
| 2v3a_A | 384 | Crystal Structure Of Rubredoxin Reductase From Pseu | 2e-06 | ||
| 3oc4_A | 452 | Crystal Structure Of A Pyridine Nucleotide-Disulfid | 2e-06 | ||
| 3oc4_A | 452 | Crystal Structure Of A Pyridine Nucleotide-Disulfid | 2e-06 | ||
| 3oc4_A | 452 | Crystal Structure Of A Pyridine Nucleotide-Disulfid | 2e-06 | ||
| 3rnm_A | 495 | The Crystal Structure Of The Subunit Binding Of Hum | 4e-06 | ||
| 3rnm_A | 495 | The Crystal Structure Of The Subunit Binding Of Hum | 4e-06 | ||
| 3rnm_A | 495 | The Crystal Structure Of The Subunit Binding Of Hum | 4e-06 | ||
| 1zmc_A | 474 | Crystal Structure Of Human Dihydrolipoamide Dehydro | 4e-06 | ||
| 1zmc_A | 474 | Crystal Structure Of Human Dihydrolipoamide Dehydro | 4e-06 | ||
| 1zmc_A | 474 | Crystal Structure Of Human Dihydrolipoamide Dehydro | 4e-06 | ||
| 1zy8_A | 474 | The Crystal Structure Of Dihydrolipoamide Dehydroge | 4e-06 | ||
| 1zy8_A | 474 | The Crystal Structure Of Dihydrolipoamide Dehydroge | 4e-06 | ||
| 1zy8_A | 474 | The Crystal Structure Of Dihydrolipoamide Dehydroge | 4e-06 | ||
| 3ean_A | 499 | Crystal Structure Of Recombinant Rat Selenoprotein | 8e-06 | ||
| 3ean_A | 499 | Crystal Structure Of Recombinant Rat Selenoprotein | 8e-06 | ||
| 3ean_A | 499 | Crystal Structure Of Recombinant Rat Selenoprotein | 8e-06 | ||
| 1h6v_A | 499 | Mammalian Thioredoxin Reductase Length = 499 | 8e-06 | ||
| 1h6v_A | 499 | Mammalian Thioredoxin Reductase Length = 499 | 8e-06 | ||
| 1h6v_A | 499 | Mammalian Thioredoxin Reductase Length = 499 | 8e-06 | ||
| 1ger_A | 450 | The Structure Of Glutathione Reductase From Escheri | 1e-05 | ||
| 1ger_A | 450 | The Structure Of Glutathione Reductase From Escheri | 1e-05 | ||
| 1ger_A | 450 | The Structure Of Glutathione Reductase From Escheri | 1e-05 | ||
| 1typ_A | 487 | Substrate Interactions Between Trypanothione Reduct | 2e-05 | ||
| 1typ_A | 487 | Substrate Interactions Between Trypanothione Reduct | 2e-05 | ||
| 1typ_A | 487 | Substrate Interactions Between Trypanothione Reduct | 2e-05 | ||
| 3kd9_A | 449 | Crystal Structure Of Pyridine Nucleotide Disulfide | 2e-05 | ||
| 3kd9_A | 449 | Crystal Structure Of Pyridine Nucleotide Disulfide | 2e-05 | ||
| 3kd9_A | 449 | Crystal Structure Of Pyridine Nucleotide Disulfide | 2e-05 | ||
| 1tyt_A | 487 | Crystal And Molecular Structure Of Crithidia Fascic | 2e-05 | ||
| 1tyt_A | 487 | Crystal And Molecular Structure Of Crithidia Fascic | 2e-05 | ||
| 1tyt_A | 487 | Crystal And Molecular Structure Of Crithidia Fascic | 2e-05 | ||
| 3cty_A | 319 | Crystal Structure Of T. Acidophilum Thioredoxin Red | 4e-05 | ||
| 3cty_A | 319 | Crystal Structure Of T. Acidophilum Thioredoxin Red | 4e-05 | ||
| 3cty_A | 319 | Crystal Structure Of T. Acidophilum Thioredoxin Red | 4e-05 | ||
| 2bc1_A | 490 | Structural Analysis Of Streptococcus Pyogenes Nadh | 5e-05 | ||
| 2bc1_A | 490 | Structural Analysis Of Streptococcus Pyogenes Nadh | 5e-05 | ||
| 2bc1_A | 490 | Structural Analysis Of Streptococcus Pyogenes Nadh | 5e-05 | ||
| 2bc0_A | 490 | Structural Analysis Of Streptococcus Pyogenes Nadh | 5e-05 | ||
| 2bc0_A | 490 | Structural Analysis Of Streptococcus Pyogenes Nadh | 5e-05 | ||
| 2bc0_A | 490 | Structural Analysis Of Streptococcus Pyogenes Nadh | 5e-05 | ||
| 2hqm_A | 479 | Crystal Structure Of Glutathione Reductase Glr1 Fro | 6e-05 | ||
| 2hqm_A | 479 | Crystal Structure Of Glutathione Reductase Glr1 Fro | 6e-05 | ||
| 2hqm_A | 479 | Crystal Structure Of Glutathione Reductase Glr1 Fro | 6e-05 | ||
| 1fea_A | 490 | Unliganded Crithidia Fasciculata Trypanothione Redu | 7e-05 | ||
| 1fea_A | 490 | Unliganded Crithidia Fasciculata Trypanothione Redu | 7e-05 | ||
| 1fea_A | 490 | Unliganded Crithidia Fasciculata Trypanothione Redu | 7e-05 | ||
| 2tpr_A | 490 | X-ray Structure Of Trypanothione Reductase From Cri | 7e-05 | ||
| 2tpr_A | 490 | X-ray Structure Of Trypanothione Reductase From Cri | 7e-05 | ||
| 2tpr_A | 490 | X-ray Structure Of Trypanothione Reductase From Cri | 7e-05 | ||
| 4dna_A | 463 | Crystal Structure Of Putative Glutathione Reductase | 1e-04 | ||
| 4dna_A | 463 | Crystal Structure Of Putative Glutathione Reductase | 1e-04 | ||
| 4dna_A | 463 | Crystal Structure Of Putative Glutathione Reductase | 1e-04 | ||
| 2v6o_A | 596 | Structure Of Schistosoma Mansoni Thioredoxin-Glutat | 1e-04 | ||
| 2v6o_A | 596 | Structure Of Schistosoma Mansoni Thioredoxin-Glutat | 1e-04 | ||
| 2v6o_A | 596 | Structure Of Schistosoma Mansoni Thioredoxin-Glutat | 1e-04 | ||
| 3h4k_A | 598 | Crystal Structure Of The Wild Type Thioredoxin Glut | 1e-04 | ||
| 3h4k_A | 598 | Crystal Structure Of The Wild Type Thioredoxin Glut | 1e-04 | ||
| 3h4k_A | 598 | Crystal Structure Of The Wild Type Thioredoxin Glut | 1e-04 | ||
| 1ges_A | 450 | Anatomy Of An Engineered Nad-Binding Site Length = | 2e-04 | ||
| 1ges_A | 450 | Anatomy Of An Engineered Nad-Binding Site Length = | 2e-04 | ||
| 1ges_A | 450 | Anatomy Of An Engineered Nad-Binding Site Length = | 2e-04 | ||
| 2x8c_A | 598 | Thioredoxin Glutathione Reductase From Schistosoma | 2e-04 | ||
| 2x8c_A | 598 | Thioredoxin Glutathione Reductase From Schistosoma | 2e-04 | ||
| 2x8c_A | 598 | Thioredoxin Glutathione Reductase From Schistosoma | 2e-04 | ||
| 1vck_A | 115 | Crystal Structure Of Ferredoxin Component Of Carbaz | 2e-04 | ||
| 3ab1_A | 360 | Crystal Structure Of Ferredoxin Nadp+ Oxidoreductas | 2e-04 | ||
| 3ab1_A | 360 | Crystal Structure Of Ferredoxin Nadp+ Oxidoreductas | 2e-04 | ||
| 3ab1_A | 360 | Crystal Structure Of Ferredoxin Nadp+ Oxidoreductas | 2e-04 | ||
| 1fl2_A | 310 | Catalytic Core Component Of The Alkylhydroperoxide | 5e-04 | ||
| 1fl2_A | 310 | Catalytic Core Component Of The Alkylhydroperoxide | 5e-04 | ||
| 1fl2_A | 310 | Catalytic Core Component Of The Alkylhydroperoxide | 5e-04 | ||
| 2grt_A | 461 | Human Glutathione Reductase A34e, R37w Mutant, Oxid | 5e-04 | ||
| 2grt_A | 461 | Human Glutathione Reductase A34e, R37w Mutant, Oxid | 5e-04 | ||
| 2grt_A | 461 | Human Glutathione Reductase A34e, R37w Mutant, Oxid | 5e-04 | ||
| 2x50_A | 510 | Crystal Structure Of Trypanothione Reductase From L | 5e-04 | ||
| 2x50_A | 510 | Crystal Structure Of Trypanothione Reductase From L | 5e-04 | ||
| 2x50_A | 510 | Crystal Structure Of Trypanothione Reductase From L | 5e-04 | ||
| 2aaq_A | 479 | Crystal Structure Analysis Of The Human Glutahione | 6e-04 | ||
| 2aaq_A | 479 | Crystal Structure Analysis Of The Human Glutahione | 6e-04 | ||
| 2aaq_A | 479 | Crystal Structure Analysis Of The Human Glutahione | 6e-04 | ||
| 3djg_X | 477 | Catalytic Cycle Of Human Glutathione Reductase Near | 6e-04 | ||
| 3djg_X | 477 | Catalytic Cycle Of Human Glutathione Reductase Near | 6e-04 | ||
| 3djg_X | 477 | Catalytic Cycle Of Human Glutathione Reductase Near | 6e-04 | ||
| 1bwc_A | 478 | Structure Of Human Glutathione Reductase Complexed | 6e-04 | ||
| 1bwc_A | 478 | Structure Of Human Glutathione Reductase Complexed | 6e-04 | ||
| 1bwc_A | 478 | Structure Of Human Glutathione Reductase Complexed | 6e-04 | ||
| 2jk6_A | 511 | Structure Of Trypanothione Reductase From Leishmani | 6e-04 | ||
| 2jk6_A | 511 | Structure Of Trypanothione Reductase From Leishmani | 6e-04 | ||
| 2jk6_A | 511 | Structure Of Trypanothione Reductase From Leishmani | 6e-04 | ||
| 1xan_A | 461 | Human Glutathione Reductase In Complex With A Xanth | 6e-04 | ||
| 1xan_A | 461 | Human Glutathione Reductase In Complex With A Xanth | 6e-04 | ||
| 1xan_A | 461 | Human Glutathione Reductase In Complex With A Xanth | 6e-04 | ||
| 1grg_A | 478 | Substrate Binding And Catalysis By Glutathione Redu | 6e-04 | ||
| 1grg_A | 478 | Substrate Binding And Catalysis By Glutathione Redu | 6e-04 | ||
| 1grg_A | 478 | Substrate Binding And Catalysis By Glutathione Redu | 6e-04 | ||
| 1dnc_A | 478 | Human Glutathione Reductase Modified By Diglutathio | 6e-04 | ||
| 1dnc_A | 478 | Human Glutathione Reductase Modified By Diglutathio | 6e-04 | ||
| 1dnc_A | 478 | Human Glutathione Reductase Modified By Diglutathio | 6e-04 | ||
| 1grt_A | 478 | Human Glutathione Reductase A34eR37W MUTANT Length | 6e-04 | ||
| 1grt_A | 478 | Human Glutathione Reductase A34eR37W MUTANT Length | 6e-04 | ||
| 1grt_A | 478 | Human Glutathione Reductase A34eR37W MUTANT Length | 6e-04 | ||
| 1k4q_A | 463 | Human Glutathione Reductase Inactivated By Peroxyni | 6e-04 | ||
| 1k4q_A | 463 | Human Glutathione Reductase Inactivated By Peroxyni | 6e-04 | ||
| 1k4q_A | 463 | Human Glutathione Reductase Inactivated By Peroxyni | 6e-04 | ||
| 2i7f_A | 108 | Sphingomonas Yanoikuyae B1 Ferredoxin Length = 108 | 6e-04 |
| >pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin Reductase- Putidaredoxin Complex Length = 436 | Back alignment and structure |
|
| >pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin Reductase- Putidaredoxin Complex Length = 436 | Back alignment and structure |
|
| >pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin Reductase- Putidaredoxin Complex Length = 436 | Back alignment and structure |
|
| >pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From Pseudomonas Putida Length = 431 | Back alignment and structure |
|
| >pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From Pseudomonas Putida Length = 431 | Back alignment and structure |
|
| >pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From Pseudomonas Putida Length = 431 | Back alignment and structure |
|
| >pdb|3LXD|A Chain A, Crystal Structure Of Ferredoxin Reductase Arr From Novosphingobium Aromaticivorans Length = 415 | Back alignment and structure |
|
| >pdb|3FG2|P Chain P, Crystal Structure Of Ferredoxin Reductase For The Cyp199a2 System From Rhodopseudomonas Palustris Length = 404 | Back alignment and structure |
|
| >pdb|3FG2|P Chain P, Crystal Structure Of Ferredoxin Reductase For The Cyp199a2 System From Rhodopseudomonas Palustris Length = 404 | Back alignment and structure |
|
| >pdb|3FG2|P Chain P, Crystal Structure Of Ferredoxin Reductase For The Cyp199a2 System From Rhodopseudomonas Palustris Length = 404 | Back alignment and structure |
|
| >pdb|1D7Y|A Chain A, Crystal Structure Of Nadh-Dependent Ferredoxin Reductase, Bpha4 Length = 408 | Back alignment and structure |
|
| >pdb|1D7Y|A Chain A, Crystal Structure Of Nadh-Dependent Ferredoxin Reductase, Bpha4 Length = 408 | Back alignment and structure |
|
| >pdb|2GR3|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized Form) Length = 408 | Back alignment and structure |
|
| >pdb|2GR3|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized Form) Length = 408 | Back alignment and structure |
|
| >pdb|3EF6|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase Reductase Length = 410 | Back alignment and structure |
|
| >pdb|3EF6|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase Reductase Length = 410 | Back alignment and structure |
|
| >pdb|3EF6|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase Reductase Length = 410 | Back alignment and structure |
|
| >pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis Coenzyme A- Disulfide Reductase: A Structural Analysis Of Dual Nad(p)h Specificity Length = 480 | Back alignment and structure |
|
| >pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis Coenzyme A- Disulfide Reductase: A Structural Analysis Of Dual Nad(p)h Specificity Length = 480 | Back alignment and structure |
|
| >pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis Coenzyme A- Disulfide Reductase: A Structural Analysis Of Dual Nad(p)h Specificity Length = 480 | Back alignment and structure |
|
| >pdb|3CGB|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis Coenzyme A- Disulfide Reductase: A Structural Analysis Of Dual Nad(P)h Specificity Length = 480 | Back alignment and structure |
|
| >pdb|3CGB|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis Coenzyme A- Disulfide Reductase: A Structural Analysis Of Dual Nad(P)h Specificity Length = 480 | Back alignment and structure |
|
| >pdb|3CGB|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis Coenzyme A- Disulfide Reductase: A Structural Analysis Of Dual Nad(P)h Specificity Length = 480 | Back alignment and structure |
|
| >pdb|3KLJ|A Chain A, Crystal Structure Of Nadh:rubredoxin Oxidoreductase From Clostridium Acetobutylicum Length = 385 | Back alignment and structure |
|
| >pdb|3KLJ|A Chain A, Crystal Structure Of Nadh:rubredoxin Oxidoreductase From Clostridium Acetobutylicum Length = 385 | Back alignment and structure |
|
| >pdb|3KLJ|A Chain A, Crystal Structure Of Nadh:rubredoxin Oxidoreductase From Clostridium Acetobutylicum Length = 385 | Back alignment and structure |
|
| >pdb|2CDU|A Chain A, The Crystal Structure Of Water-Forming Nad(P)h Oxidase From Lactobacillus Sanfranciscensis Length = 452 | Back alignment and structure |
|
| >pdb|2CDU|A Chain A, The Crystal Structure Of Water-Forming Nad(P)h Oxidase From Lactobacillus Sanfranciscensis Length = 452 | Back alignment and structure |
|
| >pdb|2CDU|A Chain A, The Crystal Structure Of Water-Forming Nad(P)h Oxidase From Lactobacillus Sanfranciscensis Length = 452 | Back alignment and structure |
|
| >pdb|1ZK7|A Chain A, Crystal Structure Of Tn501 Mera Length = 467 | Back alignment and structure |
|
| >pdb|1ZK7|A Chain A, Crystal Structure Of Tn501 Mera Length = 467 | Back alignment and structure |
|
| >pdb|1ZK7|A Chain A, Crystal Structure Of Tn501 Mera Length = 467 | Back alignment and structure |
|
| >pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox Centre In Enterococcal Nadh Peroxidase To A Disulfide Length = 447 | Back alignment and structure |
|
| >pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox Centre In Enterococcal Nadh Peroxidase To A Disulfide Length = 447 | Back alignment and structure |
|
| >pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox Centre In Enterococcal Nadh Peroxidase To A Disulfide Length = 447 | Back alignment and structure |
|
| >pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And Cys42ser Mutants: Active Site Structure, Mechanistic Implications, And An Unusual Environment Of Arg303 Length = 447 | Back alignment and structure |
|
| >pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And Cys42ser Mutants: Active Site Structure, Mechanistic Implications, And An Unusual Environment Of Arg303 Length = 447 | Back alignment and structure |
|
| >pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And Cys42ser Mutants: Active Site Structure, Mechanistic Implications, And An Unusual Environment Of Arg303 Length = 447 | Back alignment and structure |
|
| >pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox Centre In Enterococcal Nadh Peroxidase To A Disulfide Length = 447 | Back alignment and structure |
|
| >pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox Centre In Enterococcal Nadh Peroxidase To A Disulfide Length = 447 | Back alignment and structure |
|
| >pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox Centre In Enterococcal Nadh Peroxidase To A Disulfide Length = 447 | Back alignment and structure |
|
| >pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid Length = 447 | Back alignment and structure |
|
| >pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid Length = 447 | Back alignment and structure |
|
| >pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid Length = 447 | Back alignment and structure |
|
| >pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And Cys42ser Mutants: Active Site Structure, Mechanistic Implications, And An Unusual Environment Of Arg303 Length = 447 | Back alignment and structure |
|
| >pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And Cys42ser Mutants: Active Site Structure, Mechanistic Implications, And An Unusual Environment Of Arg303 Length = 447 | Back alignment and structure |
|
| >pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And Cys42ser Mutants: Active Site Structure, Mechanistic Implications, And An Unusual Environment Of Arg303 Length = 447 | Back alignment and structure |
|
| >pdb|1M6I|A Chain A, Crystal Structure Of Apoptosis Inducing Factor (Aif) Length = 493 | Back alignment and structure |
|
| >pdb|1M6I|A Chain A, Crystal Structure Of Apoptosis Inducing Factor (Aif) Length = 493 | Back alignment and structure |
|
| >pdb|1M6I|A Chain A, Crystal Structure Of Apoptosis Inducing Factor (Aif) Length = 493 | Back alignment and structure |
|
| >pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m Length = 447 | Back alignment and structure |
|
| >pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m Length = 447 | Back alignment and structure |
|
| >pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m Length = 447 | Back alignment and structure |
|
| >pdb|4FDC|B Chain B, Crystal Structure Of The E493v Mutant Of Human Apoptosis Inducing Factor (Aif) Length = 514 | Back alignment and structure |
|
| >pdb|4FDC|B Chain B, Crystal Structure Of The E493v Mutant Of Human Apoptosis Inducing Factor (Aif) Length = 514 | Back alignment and structure |
|
| >pdb|4FDC|B Chain B, Crystal Structure Of The E493v Mutant Of Human Apoptosis Inducing Factor (Aif) Length = 514 | Back alignment and structure |
|
| >pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding Domain Of The Dihydrolipoamide Acetylase Length = 455 | Back alignment and structure |
|
| >pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding Domain Of The Dihydrolipoamide Acetylase Length = 455 | Back alignment and structure |
|
| >pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding Domain Of The Dihydrolipoamide Acetylase Length = 455 | Back alignment and structure |
|
| >pdb|1GV4|A Chain A, Murine Apoptosis-Inducing Factor (Aif) Length = 528 | Back alignment and structure |
|
| >pdb|1GV4|A Chain A, Murine Apoptosis-Inducing Factor (Aif) Length = 528 | Back alignment and structure |
|
| >pdb|1GV4|A Chain A, Murine Apoptosis-Inducing Factor (Aif) Length = 528 | Back alignment and structure |
|
| >pdb|1DXL|A Chain A, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase From Pisum Sativum Length = 470 | Back alignment and structure |
|
| >pdb|1DXL|A Chain A, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase From Pisum Sativum Length = 470 | Back alignment and structure |
|
| >pdb|1DXL|A Chain A, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase From Pisum Sativum Length = 470 | Back alignment and structure |
|
| >pdb|3GD3|A Chain A, Crystal Structure Of A Naturally Folded Murine Apoptosis Inducing Factor Length = 535 | Back alignment and structure |
|
| >pdb|3GD3|A Chain A, Crystal Structure Of A Naturally Folded Murine Apoptosis Inducing Factor Length = 535 | Back alignment and structure |
|
| >pdb|3GD3|A Chain A, Crystal Structure Of A Naturally Folded Murine Apoptosis Inducing Factor Length = 535 | Back alignment and structure |
|
| >pdb|3GD4|A Chain A, Crystal Structure Of The Reduced, Nad-Bound Form Of Murine Apoptosis Inducing Factor Length = 511 | Back alignment and structure |
|
| >pdb|3GD4|A Chain A, Crystal Structure Of The Reduced, Nad-Bound Form Of Murine Apoptosis Inducing Factor Length = 511 | Back alignment and structure |
|
| >pdb|3GD4|A Chain A, Crystal Structure Of The Reduced, Nad-Bound Form Of Murine Apoptosis Inducing Factor Length = 511 | Back alignment and structure |
|
| >pdb|3O0H|A Chain A, Crystal Structure Of Glutathione Reductase From Bartonella Henselae Length = 484 | Back alignment and structure |
|
| >pdb|3O0H|A Chain A, Crystal Structure Of Glutathione Reductase From Bartonella Henselae Length = 484 | Back alignment and structure |
|
| >pdb|3O0H|A Chain A, Crystal Structure Of Glutathione Reductase From Bartonella Henselae Length = 484 | Back alignment and structure |
|
| >pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus Thermophilus Hb8 With Psbdo Length = 455 | Back alignment and structure |
|
| >pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus Thermophilus Hb8 With Psbdo Length = 455 | Back alignment and structure |
|
| >pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus Thermophilus Hb8 With Psbdo Length = 455 | Back alignment and structure |
|
| >pdb|1MO9|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl Coenzyme M Length = 523 | Back alignment and structure |
|
| >pdb|1MO9|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl Coenzyme M Length = 523 | Back alignment and structure |
|
| >pdb|1MO9|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl Coenzyme M Length = 523 | Back alignment and structure |
|
| >pdb|1YQZ|A Chain A, Structure Of Coenzyme A-Disulfide Reductase From Staphylococcus Aureus Refined At 1.54 Angstrom Resolution Length = 438 | Back alignment and structure |
|
| >pdb|1YQZ|A Chain A, Structure Of Coenzyme A-Disulfide Reductase From Staphylococcus Aureus Refined At 1.54 Angstrom Resolution Length = 438 | Back alignment and structure |
|
| >pdb|1YQZ|A Chain A, Structure Of Coenzyme A-Disulfide Reductase From Staphylococcus Aureus Refined At 1.54 Angstrom Resolution Length = 438 | Back alignment and structure |
|
| >pdb|4EQW|A Chain A, Crystal Structure Of The Y361f, Y419f Mutant Of Staphylococcus Aureus Coadr Length = 437 | Back alignment and structure |
|
| >pdb|4EQW|A Chain A, Crystal Structure Of The Y361f, Y419f Mutant Of Staphylococcus Aureus Coadr Length = 437 | Back alignment and structure |
|
| >pdb|4EQW|A Chain A, Crystal Structure Of The Y361f, Y419f Mutant Of Staphylococcus Aureus Coadr Length = 437 | Back alignment and structure |
|
| >pdb|4EM3|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The Covalent Inhibitor Mevs-Coa Length = 437 | Back alignment and structure |
|
| >pdb|4EM3|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The Covalent Inhibitor Mevs-Coa Length = 437 | Back alignment and structure |
|
| >pdb|4EM3|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The Covalent Inhibitor Mevs-Coa Length = 437 | Back alignment and structure |
|
| >pdb|4EQS|A Chain A, Crystal Structure Of The Y419f Mutant Of Staphylococcus Aureus Coadr Length = 437 | Back alignment and structure |
|
| >pdb|4EQS|A Chain A, Crystal Structure Of The Y419f Mutant Of Staphylococcus Aureus Coadr Length = 437 | Back alignment and structure |
|
| >pdb|4EQS|A Chain A, Crystal Structure Of The Y419f Mutant Of Staphylococcus Aureus Coadr Length = 437 | Back alignment and structure |
|
| >pdb|4EQR|A Chain A, Crystal Structure Of The Y361f Mutant Of Staphylococcus Aureus Coadr Length = 437 | Back alignment and structure |
|
| >pdb|4EQR|A Chain A, Crystal Structure Of The Y361f Mutant Of Staphylococcus Aureus Coadr Length = 437 | Back alignment and structure |
|
| >pdb|4EQR|A Chain A, Crystal Structure Of The Y361f Mutant Of Staphylococcus Aureus Coadr Length = 437 | Back alignment and structure |
|
| >pdb|4EMW|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The Covalent Inhibitor Etvc-Coa Length = 436 | Back alignment and structure |
|
| >pdb|4EMW|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The Covalent Inhibitor Etvc-Coa Length = 436 | Back alignment and structure |
|
| >pdb|4EMW|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The Covalent Inhibitor Etvc-Coa Length = 436 | Back alignment and structure |
|
| >pdb|4EQX|A Chain A, Crystal Structure Of The C43s Mutant Of Staphylococcus Aureus Coadr Length = 437 | Back alignment and structure |
|
| >pdb|4EQX|A Chain A, Crystal Structure Of The C43s Mutant Of Staphylococcus Aureus Coadr Length = 437 | Back alignment and structure |
|
| >pdb|4EQX|A Chain A, Crystal Structure Of The C43s Mutant Of Staphylococcus Aureus Coadr Length = 437 | Back alignment and structure |
|
| >pdb|2WOI|A Chain A, Trypanothione Reductase From Trypanosoma Brucei Length = 495 | Back alignment and structure |
|
| >pdb|2WOI|A Chain A, Trypanothione Reductase From Trypanosoma Brucei Length = 495 | Back alignment and structure |
|
| >pdb|2WOI|A Chain A, Trypanothione Reductase From Trypanosoma Brucei Length = 495 | Back alignment and structure |
|
| >pdb|2WBA|A Chain A, Properties Of Trypanothione Reductase From T. Brucei Length = 492 | Back alignment and structure |
|
| >pdb|2WBA|A Chain A, Properties Of Trypanothione Reductase From T. Brucei Length = 492 | Back alignment and structure |
|
| >pdb|2WBA|A Chain A, Properties Of Trypanothione Reductase From T. Brucei Length = 492 | Back alignment and structure |
|
| >pdb|1XHC|A Chain A, Nadh Oxidase /nitrite Reductase From Pyrococcus Furiosus Pfu-1140779- 001 Length = 367 | Back alignment and structure |
|
| >pdb|1XHC|A Chain A, Nadh Oxidase /nitrite Reductase From Pyrococcus Furiosus Pfu-1140779- 001 Length = 367 | Back alignment and structure |
|
| >pdb|1XHC|A Chain A, Nadh Oxidase /nitrite Reductase From Pyrococcus Furiosus Pfu-1140779- 001 Length = 367 | Back alignment and structure |
|
| >pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase In The Oxidized And Nadph Reduced State Length = 491 | Back alignment and structure |
|
| >pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase In The Oxidized And Nadph Reduced State Length = 491 | Back alignment and structure |
|
| >pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase In The Oxidized And Nadph Reduced State Length = 491 | Back alignment and structure |
|
| >pdb|3IWA|A Chain A, Crystal Structure Of A Fad-Dependent Pyridine Nucleotide-Disulphide Oxidoreductase From Desulfovibrio Vulgaris Length = 472 | Back alignment and structure |
|
| >pdb|3IWA|A Chain A, Crystal Structure Of A Fad-Dependent Pyridine Nucleotide-Disulphide Oxidoreductase From Desulfovibrio Vulgaris Length = 472 | Back alignment and structure |
|
| >pdb|3IWA|A Chain A, Crystal Structure Of A Fad-Dependent Pyridine Nucleotide-Disulphide Oxidoreductase From Desulfovibrio Vulgaris Length = 472 | Back alignment and structure |
|
| >pdb|3LAD|A Chain A, Refined Crystal Structure Of Lipoamide Dehydrogenase From Azotobacter Vinelandii At 2.2 Angstroms Resolution. A Comparison With The Structure Of Glutathione Reductase Length = 476 | Back alignment and structure |
|
| >pdb|3LAD|A Chain A, Refined Crystal Structure Of Lipoamide Dehydrogenase From Azotobacter Vinelandii At 2.2 Angstroms Resolution. A Comparison With The Structure Of Glutathione Reductase Length = 476 | Back alignment and structure |
|
| >pdb|3LAD|A Chain A, Refined Crystal Structure Of Lipoamide Dehydrogenase From Azotobacter Vinelandii At 2.2 Angstroms Resolution. A Comparison With The Structure Of Glutathione Reductase Length = 476 | Back alignment and structure |
|
| >pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd Length = 588 | Back alignment and structure |
|
| >pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd Length = 588 | Back alignment and structure |
|
| >pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd Length = 588 | Back alignment and structure |
|
| >pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With The Inhibitor Quinacrine Mustard Length = 492 | Back alignment and structure |
|
| >pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With The Inhibitor Quinacrine Mustard Length = 492 | Back alignment and structure |
|
| >pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With The Inhibitor Quinacrine Mustard Length = 492 | Back alignment and structure |
|
| >pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With Trypanothione, And The Structure- Based Discovery Of New Natural Product Inhibitors Length = 486 | Back alignment and structure |
|
| >pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With Trypanothione, And The Structure- Based Discovery Of New Natural Product Inhibitors Length = 486 | Back alignment and structure |
|
| >pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With Trypanothione, And The Structure- Based Discovery Of New Natural Product Inhibitors Length = 486 | Back alignment and structure |
|
| >pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form) Length = 485 | Back alignment and structure |
|
| >pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form) Length = 485 | Back alignment and structure |
|
| >pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form) Length = 485 | Back alignment and structure |
|
| >pdb|2R9Z|A Chain A, Glutathione Amide Reductase From Chromatium Gracile Length = 463 | Back alignment and structure |
|
| >pdb|2R9Z|A Chain A, Glutathione Amide Reductase From Chromatium Gracile Length = 463 | Back alignment and structure |
|
| >pdb|2R9Z|A Chain A, Glutathione Amide Reductase From Chromatium Gracile Length = 463 | Back alignment and structure |
|
| >pdb|3DGZ|A Chain A, Crystal Structure Of Mouse Mitochondrial Thioredoxin Reductase, C- Terminal 3-Residue Truncation Length = 488 | Back alignment and structure |
|
| >pdb|3DGZ|A Chain A, Crystal Structure Of Mouse Mitochondrial Thioredoxin Reductase, C- Terminal 3-Residue Truncation Length = 488 | Back alignment and structure |
|
| >pdb|3DGZ|A Chain A, Crystal Structure Of Mouse Mitochondrial Thioredoxin Reductase, C- Terminal 3-Residue Truncation Length = 488 | Back alignment and structure |
|
| >pdb|1XDI|A Chain A, Crystal Structure Of Lpda (Rv3303c) From Mycobacterium Tuberculosis Length = 499 | Back alignment and structure |
|
| >pdb|1XDI|A Chain A, Crystal Structure Of Lpda (Rv3303c) From Mycobacterium Tuberculosis Length = 499 | Back alignment and structure |
|
| >pdb|1XDI|A Chain A, Crystal Structure Of Lpda (Rv3303c) From Mycobacterium Tuberculosis Length = 499 | Back alignment and structure |
|
| >pdb|1ZDL|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2 Length = 517 | Back alignment and structure |
|
| >pdb|1ZDL|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2 Length = 517 | Back alignment and structure |
|
| >pdb|1ZDL|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2 Length = 517 | Back alignment and structure |
|
| >pdb|2V3A|A Chain A, Crystal Structure Of Rubredoxin Reductase From Pseudomonas Aeruginosa. Length = 384 | Back alignment and structure |
|
| >pdb|2V3A|A Chain A, Crystal Structure Of Rubredoxin Reductase From Pseudomonas Aeruginosa. Length = 384 | Back alignment and structure |
|
| >pdb|2V3A|A Chain A, Crystal Structure Of Rubredoxin Reductase From Pseudomonas Aeruginosa. Length = 384 | Back alignment and structure |
|
| >pdb|3OC4|A Chain A, Crystal Structure Of A Pyridine Nucleotide-Disulfide Family Oxidoreductase From The Enterococcus Faecalis V583 Length = 452 | Back alignment and structure |
|
| >pdb|3OC4|A Chain A, Crystal Structure Of A Pyridine Nucleotide-Disulfide Family Oxidoreductase From The Enterococcus Faecalis V583 Length = 452 | Back alignment and structure |
|
| >pdb|3OC4|A Chain A, Crystal Structure Of A Pyridine Nucleotide-Disulfide Family Oxidoreductase From The Enterococcus Faecalis V583 Length = 452 | Back alignment and structure |
|
| >pdb|3RNM|A Chain A, The Crystal Structure Of The Subunit Binding Of Human Dihydrolipoamide Transacylase (E2b) Bound To Human Dihydrolipoamide Dehydrogenase (E3) Length = 495 | Back alignment and structure |
|
| >pdb|3RNM|A Chain A, The Crystal Structure Of The Subunit Binding Of Human Dihydrolipoamide Transacylase (E2b) Bound To Human Dihydrolipoamide Dehydrogenase (E3) Length = 495 | Back alignment and structure |
|
| >pdb|3RNM|A Chain A, The Crystal Structure Of The Subunit Binding Of Human Dihydrolipoamide Transacylase (E2b) Bound To Human Dihydrolipoamide Dehydrogenase (E3) Length = 495 | Back alignment and structure |
|
| >pdb|1ZMC|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase Complexed To Nad+ Length = 474 | Back alignment and structure |
|
| >pdb|1ZMC|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase Complexed To Nad+ Length = 474 | Back alignment and structure |
|
| >pdb|1ZMC|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase Complexed To Nad+ Length = 474 | Back alignment and structure |
|
| >pdb|1ZY8|A Chain A, The Crystal Structure Of Dihydrolipoamide Dehydrogenase And Dihydrolipoamide Dehydrogenase-Binding Protein (Didomain) Subcomplex Of Human Pyruvate Dehydrogenase Complex. Length = 474 | Back alignment and structure |
|
| >pdb|1ZY8|A Chain A, The Crystal Structure Of Dihydrolipoamide Dehydrogenase And Dihydrolipoamide Dehydrogenase-Binding Protein (Didomain) Subcomplex Of Human Pyruvate Dehydrogenase Complex. Length = 474 | Back alignment and structure |
|
| >pdb|1ZY8|A Chain A, The Crystal Structure Of Dihydrolipoamide Dehydrogenase And Dihydrolipoamide Dehydrogenase-Binding Protein (Didomain) Subcomplex Of Human Pyruvate Dehydrogenase Complex. Length = 474 | Back alignment and structure |
|
| >pdb|3EAN|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein Thioredoxin Reductase 1 With Reduced C-Terminal Tail Length = 499 | Back alignment and structure |
|
| >pdb|3EAN|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein Thioredoxin Reductase 1 With Reduced C-Terminal Tail Length = 499 | Back alignment and structure |
|
| >pdb|3EAN|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein Thioredoxin Reductase 1 With Reduced C-Terminal Tail Length = 499 | Back alignment and structure |
|
| >pdb|1H6V|A Chain A, Mammalian Thioredoxin Reductase Length = 499 | Back alignment and structure |
|
| >pdb|1H6V|A Chain A, Mammalian Thioredoxin Reductase Length = 499 | Back alignment and structure |
|
| >pdb|1H6V|A Chain A, Mammalian Thioredoxin Reductase Length = 499 | Back alignment and structure |
|
| >pdb|1GER|A Chain A, The Structure Of Glutathione Reductase From Escherichia Coli At 1.86 Angstroms Resolution: Comparison With The Enzyme From Human Erythrocytes Length = 450 | Back alignment and structure |
|
| >pdb|1GER|A Chain A, The Structure Of Glutathione Reductase From Escherichia Coli At 1.86 Angstroms Resolution: Comparison With The Enzyme From Human Erythrocytes Length = 450 | Back alignment and structure |
|
| >pdb|1GER|A Chain A, The Structure Of Glutathione Reductase From Escherichia Coli At 1.86 Angstroms Resolution: Comparison With The Enzyme From Human Erythrocytes Length = 450 | Back alignment and structure |
|
| >pdb|1TYP|A Chain A, Substrate Interactions Between Trypanothione Reductase And N1-Glutathionylspermidine Disulphide At 0.28-Nm Resolution Length = 487 | Back alignment and structure |
|
| >pdb|1TYP|A Chain A, Substrate Interactions Between Trypanothione Reductase And N1-Glutathionylspermidine Disulphide At 0.28-Nm Resolution Length = 487 | Back alignment and structure |
|
| >pdb|1TYP|A Chain A, Substrate Interactions Between Trypanothione Reductase And N1-Glutathionylspermidine Disulphide At 0.28-Nm Resolution Length = 487 | Back alignment and structure |
|
| >pdb|3KD9|A Chain A, Crystal Structure Of Pyridine Nucleotide Disulfide Oxidoreductase From Pyrococcus Horikoshii Length = 449 | Back alignment and structure |
|
| >pdb|3KD9|A Chain A, Crystal Structure Of Pyridine Nucleotide Disulfide Oxidoreductase From Pyrococcus Horikoshii Length = 449 | Back alignment and structure |
|
| >pdb|3KD9|A Chain A, Crystal Structure Of Pyridine Nucleotide Disulfide Oxidoreductase From Pyrococcus Horikoshii Length = 449 | Back alignment and structure |
|
| >pdb|1TYT|A Chain A, Crystal And Molecular Structure Of Crithidia Fasciculata Trypanothione Reductase At 2.6 Angstroms Resolution Length = 487 | Back alignment and structure |
|
| >pdb|1TYT|A Chain A, Crystal And Molecular Structure Of Crithidia Fasciculata Trypanothione Reductase At 2.6 Angstroms Resolution Length = 487 | Back alignment and structure |
|
| >pdb|1TYT|A Chain A, Crystal And Molecular Structure Of Crithidia Fasciculata Trypanothione Reductase At 2.6 Angstroms Resolution Length = 487 | Back alignment and structure |
|
| >pdb|3CTY|A Chain A, Crystal Structure Of T. Acidophilum Thioredoxin Reductase Length = 319 | Back alignment and structure |
|
| >pdb|3CTY|A Chain A, Crystal Structure Of T. Acidophilum Thioredoxin Reductase Length = 319 | Back alignment and structure |
|
| >pdb|3CTY|A Chain A, Crystal Structure Of T. Acidophilum Thioredoxin Reductase Length = 319 | Back alignment and structure |
|
| >pdb|2BC1|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh Oxidase: C44s Nox Length = 490 | Back alignment and structure |
|
| >pdb|2BC1|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh Oxidase: C44s Nox Length = 490 | Back alignment and structure |
|
| >pdb|2BC1|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh Oxidase: C44s Nox Length = 490 | Back alignment and structure |
|
| >pdb|2BC0|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh Oxidase: Wild-Type Nox Length = 490 | Back alignment and structure |
|
| >pdb|2BC0|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh Oxidase: Wild-Type Nox Length = 490 | Back alignment and structure |
|
| >pdb|2BC0|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh Oxidase: Wild-Type Nox Length = 490 | Back alignment and structure |
|
| >pdb|2HQM|A Chain A, Crystal Structure Of Glutathione Reductase Glr1 From The Yeast Saccharomyces Cerevisiae Length = 479 | Back alignment and structure |
|
| >pdb|2HQM|A Chain A, Crystal Structure Of Glutathione Reductase Glr1 From The Yeast Saccharomyces Cerevisiae Length = 479 | Back alignment and structure |
|
| >pdb|2HQM|A Chain A, Crystal Structure Of Glutathione Reductase Glr1 From The Yeast Saccharomyces Cerevisiae Length = 479 | Back alignment and structure |
|
| >pdb|1FEA|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase At 2.2 Angstrom Resolution Length = 490 | Back alignment and structure |
|
| >pdb|1FEA|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase At 2.2 Angstrom Resolution Length = 490 | Back alignment and structure |
|
| >pdb|1FEA|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase At 2.2 Angstrom Resolution Length = 490 | Back alignment and structure |
|
| >pdb|2TPR|A Chain A, X-ray Structure Of Trypanothione Reductase From Crithidia Fasciculata At 2.4 Angstroms Resolution Length = 490 | Back alignment and structure |
|
| >pdb|2TPR|A Chain A, X-ray Structure Of Trypanothione Reductase From Crithidia Fasciculata At 2.4 Angstroms Resolution Length = 490 | Back alignment and structure |
|
| >pdb|2TPR|A Chain A, X-ray Structure Of Trypanothione Reductase From Crithidia Fasciculata At 2.4 Angstroms Resolution Length = 490 | Back alignment and structure |
|
| >pdb|4DNA|A Chain A, Crystal Structure Of Putative Glutathione Reductase From Sinorhizobium Meliloti 1021 Length = 463 | Back alignment and structure |
|
| >pdb|4DNA|A Chain A, Crystal Structure Of Putative Glutathione Reductase From Sinorhizobium Meliloti 1021 Length = 463 | Back alignment and structure |
|
| >pdb|4DNA|A Chain A, Crystal Structure Of Putative Glutathione Reductase From Sinorhizobium Meliloti 1021 Length = 463 | Back alignment and structure |
|
| >pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione Reductase (Smtgr) Length = 596 | Back alignment and structure |
|
| >pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione Reductase (Smtgr) Length = 596 | Back alignment and structure |
|
| >pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione Reductase (Smtgr) Length = 596 | Back alignment and structure |
|
| >pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione Reductase From Schistosoma Mansoni In Complex With Auranofin Length = 598 | Back alignment and structure |
|
| >pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione Reductase From Schistosoma Mansoni In Complex With Auranofin Length = 598 | Back alignment and structure |
|
| >pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione Reductase From Schistosoma Mansoni In Complex With Auranofin Length = 598 | Back alignment and structure |
|
| >pdb|1GES|A Chain A, Anatomy Of An Engineered Nad-Binding Site Length = 450 | Back alignment and structure |
|
| >pdb|1GES|A Chain A, Anatomy Of An Engineered Nad-Binding Site Length = 450 | Back alignment and structure |
|
| >pdb|1GES|A Chain A, Anatomy Of An Engineered Nad-Binding Site Length = 450 | Back alignment and structure |
|
| >pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni With The Reduced C-Terminal End Length = 598 | Back alignment and structure |
|
| >pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni With The Reduced C-Terminal End Length = 598 | Back alignment and structure |
|
| >pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni With The Reduced C-Terminal End Length = 598 | Back alignment and structure |
|
| >pdb|1VCK|A Chain A, Crystal Structure Of Ferredoxin Component Of Carbazole 1,9a- Dioxygenase Of Pseudomonas Resinovorans Strain Ca10 Length = 115 | Back alignment and structure |
|
| >pdb|3AB1|A Chain A, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase Length = 360 | Back alignment and structure |
|
| >pdb|3AB1|A Chain A, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase Length = 360 | Back alignment and structure |
|
| >pdb|3AB1|A Chain A, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase Length = 360 | Back alignment and structure |
|
| >pdb|1FL2|A Chain A, Catalytic Core Component Of The Alkylhydroperoxide Reductase Ahpf From E.Coli Length = 310 | Back alignment and structure |
|
| >pdb|1FL2|A Chain A, Catalytic Core Component Of The Alkylhydroperoxide Reductase Ahpf From E.Coli Length = 310 | Back alignment and structure |
|
| >pdb|1FL2|A Chain A, Catalytic Core Component Of The Alkylhydroperoxide Reductase Ahpf From E.Coli Length = 310 | Back alignment and structure |
|
| >pdb|2GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized Glutathione Complex Length = 461 | Back alignment and structure |
|
| >pdb|2GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized Glutathione Complex Length = 461 | Back alignment and structure |
|
| >pdb|2GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized Glutathione Complex Length = 461 | Back alignment and structure |
|
| >pdb|2X50|A Chain A, Crystal Structure Of Trypanothione Reductase From Leishmania Infantum In Complex With Nadph And Silver Length = 510 | Back alignment and structure |
|
| >pdb|2X50|A Chain A, Crystal Structure Of Trypanothione Reductase From Leishmania Infantum In Complex With Nadph And Silver Length = 510 | Back alignment and structure |
|
| >pdb|2X50|A Chain A, Crystal Structure Of Trypanothione Reductase From Leishmania Infantum In Complex With Nadph And Silver Length = 510 | Back alignment and structure |
|
| >pdb|2AAQ|A Chain A, Crystal Structure Analysis Of The Human Glutahione Reductase, Complexed With Gopi Length = 479 | Back alignment and structure |
|
| >pdb|2AAQ|A Chain A, Crystal Structure Analysis Of The Human Glutahione Reductase, Complexed With Gopi Length = 479 | Back alignment and structure |
|
| >pdb|2AAQ|A Chain A, Crystal Structure Analysis Of The Human Glutahione Reductase, Complexed With Gopi Length = 479 | Back alignment and structure |
|
| >pdb|3DJG|X Chain X, Catalytic Cycle Of Human Glutathione Reductase Near 1 A Resolution Length = 477 | Back alignment and structure |
|
| >pdb|3DJG|X Chain X, Catalytic Cycle Of Human Glutathione Reductase Near 1 A Resolution Length = 477 | Back alignment and structure |
|
| >pdb|3DJG|X Chain X, Catalytic Cycle Of Human Glutathione Reductase Near 1 A Resolution Length = 477 | Back alignment and structure |
|
| >pdb|1BWC|A Chain A, Structure Of Human Glutathione Reductase Complexed With Ajoene Inhibitor And Subversive Substrate Length = 478 | Back alignment and structure |
|
| >pdb|1BWC|A Chain A, Structure Of Human Glutathione Reductase Complexed With Ajoene Inhibitor And Subversive Substrate Length = 478 | Back alignment and structure |
|
| >pdb|1BWC|A Chain A, Structure Of Human Glutathione Reductase Complexed With Ajoene Inhibitor And Subversive Substrate Length = 478 | Back alignment and structure |
|
| >pdb|2JK6|A Chain A, Structure Of Trypanothione Reductase From Leishmania Infantum Length = 511 | Back alignment and structure |
|
| >pdb|2JK6|A Chain A, Structure Of Trypanothione Reductase From Leishmania Infantum Length = 511 | Back alignment and structure |
|
| >pdb|2JK6|A Chain A, Structure Of Trypanothione Reductase From Leishmania Infantum Length = 511 | Back alignment and structure |
|
| >pdb|1XAN|A Chain A, Human Glutathione Reductase In Complex With A Xanthene Inhibitor Length = 461 | Back alignment and structure |
|
| >pdb|1XAN|A Chain A, Human Glutathione Reductase In Complex With A Xanthene Inhibitor Length = 461 | Back alignment and structure |
|
| >pdb|1XAN|A Chain A, Human Glutathione Reductase In Complex With A Xanthene Inhibitor Length = 461 | Back alignment and structure |
|
| >pdb|1GRG|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase As Derived From Refined Enzyme: Substrate Crystal Structures At 2 Angstroms Resolution Length = 478 | Back alignment and structure |
|
| >pdb|1GRG|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase As Derived From Refined Enzyme: Substrate Crystal Structures At 2 Angstroms Resolution Length = 478 | Back alignment and structure |
|
| >pdb|1GRG|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase As Derived From Refined Enzyme: Substrate Crystal Structures At 2 Angstroms Resolution Length = 478 | Back alignment and structure |
|
| >pdb|1DNC|A Chain A, Human Glutathione Reductase Modified By Diglutathione-Dinitroso-Iron Length = 478 | Back alignment and structure |
|
| >pdb|1DNC|A Chain A, Human Glutathione Reductase Modified By Diglutathione-Dinitroso-Iron Length = 478 | Back alignment and structure |
|
| >pdb|1DNC|A Chain A, Human Glutathione Reductase Modified By Diglutathione-Dinitroso-Iron Length = 478 | Back alignment and structure |
|
| >pdb|1GRT|A Chain A, Human Glutathione Reductase A34eR37W MUTANT Length = 478 | Back alignment and structure |
|
| >pdb|1GRT|A Chain A, Human Glutathione Reductase A34eR37W MUTANT Length = 478 | Back alignment and structure |
|
| >pdb|1GRT|A Chain A, Human Glutathione Reductase A34eR37W MUTANT Length = 478 | Back alignment and structure |
|
| >pdb|2I7F|A Chain A, Sphingomonas Yanoikuyae B1 Ferredoxin Length = 108 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} Length = 415 | Back alignment and structure |
|---|
Score = 343 bits (883), Expect = e-106
Identities = 113/387 (29%), Positives = 176/387 (45%), Gaps = 13/387 (3%)
Query: 35 MAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL--- 91
MA + ++VG G GA LRQNGF G++ I E +PY+R LSK+
Sbjct: 1 MASEVQAERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAR 60
Query: 92 DIKADSILLRTEEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSS 150
+ + I +R +F++D + + G +++S D +KL DG++I++ K+ ATG
Sbjct: 61 EKTFERICIRPAQFWEDKAVEMKLGAEVVSLD--PAAHTVKLGDGSAIEYGKLIWATGGD 118
Query: 151 PRTISQADG-VNKVFYLRTVEDANNIAPHITPES-NVVVIGSSFIGMEAAAFCASKVKSV 208
PR +S + V +RT EDA+ + + + N VVIG +IG+EAAA +V
Sbjct: 119 PRRLSCVGADLAGVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEAAAVLTKFGVNV 178
Query: 209 TVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTT 268
T++ G+ + E + GV A + E + VT + +G+
Sbjct: 179 TLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEG-DGTKVTGVRMQDGSV 237
Query: 269 IPADLVIVGIGTVLNTNYLDGKGVEL-NGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSF 327
IPAD+VIVGIG V L G NG V V+E+ T++ VYA GD A
Sbjct: 238 IPADIVIVGIGIVPCVGALISAGASGGNG---VDVDEFCRTSLTDVYAIGDCAAHANDFA 294
Query: 328 YNKNASIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRFAGYAAGHTQVDI 387
+ Q A AA ++ P+FW+ + + + G + GH +
Sbjct: 295 DGAVIRLESVQNANDMATAAAKDICGAPVPYKATPWFWSNQYDLKLQTVGLSTGHDNAVL 354
Query: 388 VGDLEALKFTAYYSNADKVLAILTVGM 414
GD F+ Y KV+A+ V M
Sbjct: 355 RGDPATRSFSVVYLKGGKVVALDCVNM 381
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} Length = 415 | Back alignment and structure |
|---|
Score = 343 bits (883), Expect = e-106
Identities = 113/387 (29%), Positives = 176/387 (45%), Gaps = 13/387 (3%)
Query: 587 MAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL--- 643
MA + ++VG G GA LRQNGF G++ I E +PY+R LSK+
Sbjct: 1 MASEVQAERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAR 60
Query: 644 DIKADSILLRTEEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSS 702
+ + I +R +F++D + + G +++S D +KL DG++I++ K+ ATG
Sbjct: 61 EKTFERICIRPAQFWEDKAVEMKLGAEVVSLD--PAAHTVKLGDGSAIEYGKLIWATGGD 118
Query: 703 PRTISQADG-VNKVFYLRTVEDANNIAPHITPES-NVVVIGSSFIGMEAAAFCASKVKSV 760
PR +S + V +RT EDA+ + + + N VVIG +IG+EAAA +V
Sbjct: 119 PRRLSCVGADLAGVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEAAAVLTKFGVNV 178
Query: 761 TVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTT 820
T++ G+ + E + GV A + E + VT + +G+
Sbjct: 179 TLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEG-DGTKVTGVRMQDGSV 237
Query: 821 IPADLVIVGIGTVLNTNYLDGKGVEL-NGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSF 879
IPAD+VIVGIG V L G NG V V+E+ T++ VYA GD A
Sbjct: 238 IPADIVIVGIGIVPCVGALISAGASGGNG---VDVDEFCRTSLTDVYAIGDCAAHANDFA 294
Query: 880 YNKNASIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRFAGYAAGHTQVDI 939
+ Q A AA ++ P+FW+ + + + G + GH +
Sbjct: 295 DGAVIRLESVQNANDMATAAAKDICGAPVPYKATPWFWSNQYDLKLQTVGLSTGHDNAVL 354
Query: 940 VGDLEALKFTAYYSNADKVLAILTVGM 966
GD F+ Y KV+A+ V M
Sbjct: 355 RGDPATRSFSVVYLKGGKVVALDCVNM 381
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} Length = 415 | Back alignment and structure |
|---|
Score = 343 bits (883), Expect = e-106
Identities = 113/387 (29%), Positives = 176/387 (45%), Gaps = 13/387 (3%)
Query: 1058 MAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL--- 1114
MA + ++VG G GA LRQNGF G++ I E +PY+R LSK+
Sbjct: 1 MASEVQAERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAR 60
Query: 1115 DIKADSILLRTEEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSS 1173
+ + I +R +F++D + + G +++S D +KL DG++I++ K+ ATG
Sbjct: 61 EKTFERICIRPAQFWEDKAVEMKLGAEVVSLD--PAAHTVKLGDGSAIEYGKLIWATGGD 118
Query: 1174 PRTISQADG-VNKVFYLRTVEDANNIAPHITPES-NVVVIGSSFIGMEAAAFCASKVKSV 1231
PR +S + V +RT EDA+ + + + N VVIG +IG+EAAA +V
Sbjct: 119 PRRLSCVGADLAGVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEAAAVLTKFGVNV 178
Query: 1232 TVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTT 1291
T++ G+ + E + GV A + E + VT + +G+
Sbjct: 179 TLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEG-DGTKVTGVRMQDGSV 237
Query: 1292 IPADLVIVGIGTVLNTNYLDGKGVEL-NGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSF 1350
IPAD+VIVGIG V L G NG V V+E+ T++ VYA GD A
Sbjct: 238 IPADIVIVGIGIVPCVGALISAGASGGNG---VDVDEFCRTSLTDVYAIGDCAAHANDFA 294
Query: 1351 YNKNASIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRFAGYAAGHTQVDI 1410
+ Q A AA ++ P+FW+ + + + G + GH +
Sbjct: 295 DGAVIRLESVQNANDMATAAAKDICGAPVPYKATPWFWSNQYDLKLQTVGLSTGHDNAVL 354
Query: 1411 VGDLEALKFTAYYSNADKVLAILTVGM 1437
GD F+ Y KV+A+ V M
Sbjct: 355 RGDPATRSFSVVYLKGGKVVALDCVNM 381
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* Length = 431 | Back alignment and structure |
|---|
Score = 343 bits (883), Expect = e-106
Identities = 109/381 (28%), Positives = 180/381 (47%), Gaps = 16/381 (4%)
Query: 44 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL---DIKADSILL 100
D ++VG G +G LR +G+ G + + D +P+ LSK A+S+ L
Sbjct: 5 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYL 64
Query: 101 RTEEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTI----S 155
RT + Y +I ++ G ++ + + + +++ L DG ++D+ ++ LATG PR +
Sbjct: 65 RTPDAYAAQNIQLLGGTQVTAIN--RDRQQVILSDGRALDYDRLVLATGGRPRPLPVASG 122
Query: 156 QADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGA 215
N YLRT+EDA I + ++ +VVIG +IG+E AA VT++ A
Sbjct: 123 AVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAA 182
Query: 216 VPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKND-VTAANLDNGTTIPADLV 274
+ V L GV V FE + VTA ++GT +PADLV
Sbjct: 183 RVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLV 242
Query: 275 IVGIGTVLNTNYLDGKGVEL-NGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNAS 333
I GIG + N G+++ NG +V+NE+++T+ P + A GD A Y++
Sbjct: 243 IAGIGLIPNCELASAAGLQVDNG---IVINEHMQTSDPLIMAVGDCARFH-SQLYDRWVR 298
Query: 334 IGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLEA 393
I A R A + K P+FW+ + +G + G + G+ ++ + G L
Sbjct: 299 IESVPNALEQARKIAAILCGKVPRDEAAPWFWSDQYEIGLKMVGLSEGYDRIIVRGSLAQ 358
Query: 394 LKFTAYYSNADKVLAILTVGM 414
F+ +Y D+VLA+ TV
Sbjct: 359 PDFSVFYLQGDRVLAVDTVNR 379
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* Length = 431 | Back alignment and structure |
|---|
Score = 343 bits (883), Expect = e-106
Identities = 109/381 (28%), Positives = 180/381 (47%), Gaps = 16/381 (4%)
Query: 596 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL---DIKADSILL 652
D ++VG G +G LR +G+ G + + D +P+ LSK A+S+ L
Sbjct: 5 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYL 64
Query: 653 RTEEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTI----S 707
RT + Y +I ++ G ++ + + + +++ L DG ++D+ ++ LATG PR +
Sbjct: 65 RTPDAYAAQNIQLLGGTQVTAIN--RDRQQVILSDGRALDYDRLVLATGGRPRPLPVASG 122
Query: 708 QADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGA 767
N YLRT+EDA I + ++ +VVIG +IG+E AA VT++ A
Sbjct: 123 AVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAA 182
Query: 768 VPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKND-VTAANLDNGTTIPADLV 826
+ V L GV V FE + VTA ++GT +PADLV
Sbjct: 183 RVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLV 242
Query: 827 IVGIGTVLNTNYLDGKGVEL-NGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNAS 885
I GIG + N G+++ NG +V+NE+++T+ P + A GD A Y++
Sbjct: 243 IAGIGLIPNCELASAAGLQVDNG---IVINEHMQTSDPLIMAVGDCARFH-SQLYDRWVR 298
Query: 886 IGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLEA 945
I A R A + K P+FW+ + +G + G + G+ ++ + G L
Sbjct: 299 IESVPNALEQARKIAAILCGKVPRDEAAPWFWSDQYEIGLKMVGLSEGYDRIIVRGSLAQ 358
Query: 946 LKFTAYYSNADKVLAILTVGM 966
F+ +Y D+VLA+ TV
Sbjct: 359 PDFSVFYLQGDRVLAVDTVNR 379
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* Length = 431 | Back alignment and structure |
|---|
Score = 343 bits (883), Expect = e-106
Identities = 109/381 (28%), Positives = 180/381 (47%), Gaps = 16/381 (4%)
Query: 1067 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL---DIKADSILL 1123
D ++VG G +G LR +G+ G + + D +P+ LSK A+S+ L
Sbjct: 5 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYL 64
Query: 1124 RTEEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTI----S 1178
RT + Y +I ++ G ++ + + + +++ L DG ++D+ ++ LATG PR +
Sbjct: 65 RTPDAYAAQNIQLLGGTQVTAIN--RDRQQVILSDGRALDYDRLVLATGGRPRPLPVASG 122
Query: 1179 QADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGA 1238
N YLRT+EDA I + ++ +VVIG +IG+E AA VT++ A
Sbjct: 123 AVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAA 182
Query: 1239 VPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKND-VTAANLDNGTTIPADLV 1297
+ V L GV V FE + VTA ++GT +PADLV
Sbjct: 183 RVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLV 242
Query: 1298 IVGIGTVLNTNYLDGKGVEL-NGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNAS 1356
I GIG + N G+++ NG +V+NE+++T+ P + A GD A Y++
Sbjct: 243 IAGIGLIPNCELASAAGLQVDNG---IVINEHMQTSDPLIMAVGDCARFH-SQLYDRWVR 298
Query: 1357 IGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLEA 1416
I A R A + K P+FW+ + +G + G + G+ ++ + G L
Sbjct: 299 IESVPNALEQARKIAAILCGKVPRDEAAPWFWSDQYEIGLKMVGLSEGYDRIIVRGSLAQ 358
Query: 1417 LKFTAYYSNADKVLAILTVGM 1437
F+ +Y D+VLA+ TV
Sbjct: 359 PDFSVFYLQGDRVLAVDTVNR 379
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} Length = 404 | Back alignment and structure |
|---|
Score = 338 bits (870), Expect = e-105
Identities = 105/377 (27%), Positives = 174/377 (46%), Gaps = 14/377 (3%)
Query: 44 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL---DIKADSILL 100
DT ++ G G +G +LRQ + G++ I DE LPY R LSK +S++
Sbjct: 2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMF 61
Query: 101 RTEEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADG 159
R E+F++D I +I +++S D E +K+ L GT+I++ + LATG+ R + +
Sbjct: 62 RPEKFFQDQAIELI-SDRMVSIDRE--GRKLLLASGTAIEYGHLVLATGARNRMLDVPNA 118
Query: 160 -VNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF 218
+ V YLRT++++ + + + +VVVIG+ FIG+E AA +K V VV
Sbjct: 119 SLPDVLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVM 178
Query: 219 QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 278
+ E+ G++ + E + VT L +G T+P DLV+VG+
Sbjct: 179 ARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAA-EGDRVTGVVLSDGNTLPCDLVVVGV 237
Query: 279 GTVLNTNYLDGKGVEL-NGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHY 337
G + N G+ G ++V++ L T+ P + A GD A + + +
Sbjct: 238 GVIPNVEIAAAAGLPTAAG---IIVDQQLLTSDPHISAIGDCALFE-SVRFGETMRVESV 293
Query: 338 QLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLEALKFT 397
Q A R A + P+FW+ + G AG QV I G + F+
Sbjct: 294 QNATDQARCVAARLTGDAKPYDGYPWFWSDQGDDKLQIVGLTAGFDQVVIRGSVAERSFS 353
Query: 398 AYYSNADKVLAILTVGM 414
A+ A K++ I +V
Sbjct: 354 AFCYKAGKLIGIESVNR 370
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} Length = 404 | Back alignment and structure |
|---|
Score = 338 bits (870), Expect = e-105
Identities = 105/377 (27%), Positives = 174/377 (46%), Gaps = 14/377 (3%)
Query: 596 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL---DIKADSILL 652
DT ++ G G +G +LRQ + G++ I DE LPY R LSK +S++
Sbjct: 2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMF 61
Query: 653 RTEEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADG 711
R E+F++D I +I +++S D E +K+ L GT+I++ + LATG+ R + +
Sbjct: 62 RPEKFFQDQAIELI-SDRMVSIDRE--GRKLLLASGTAIEYGHLVLATGARNRMLDVPNA 118
Query: 712 -VNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF 770
+ V YLRT++++ + + + +VVVIG+ FIG+E AA +K V VV
Sbjct: 119 SLPDVLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVM 178
Query: 771 QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 830
+ E+ G++ + E + VT L +G T+P DLV+VG+
Sbjct: 179 ARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAA-EGDRVTGVVLSDGNTLPCDLVVVGV 237
Query: 831 GTVLNTNYLDGKGVEL-NGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHY 889
G + N G+ G ++V++ L T+ P + A GD A + + +
Sbjct: 238 GVIPNVEIAAAAGLPTAAG---IIVDQQLLTSDPHISAIGDCALFE-SVRFGETMRVESV 293
Query: 890 QLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLEALKFT 949
Q A R A + P+FW+ + G AG QV I G + F+
Sbjct: 294 QNATDQARCVAARLTGDAKPYDGYPWFWSDQGDDKLQIVGLTAGFDQVVIRGSVAERSFS 353
Query: 950 AYYSNADKVLAILTVGM 966
A+ A K++ I +V
Sbjct: 354 AFCYKAGKLIGIESVNR 370
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} Length = 404 | Back alignment and structure |
|---|
Score = 338 bits (870), Expect = e-105
Identities = 105/377 (27%), Positives = 174/377 (46%), Gaps = 14/377 (3%)
Query: 1067 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL---DIKADSILL 1123
DT ++ G G +G +LRQ + G++ I DE LPY R LSK +S++
Sbjct: 2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMF 61
Query: 1124 RTEEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADG 1182
R E+F++D I +I +++S D E +K+ L GT+I++ + LATG+ R + +
Sbjct: 62 RPEKFFQDQAIELI-SDRMVSIDRE--GRKLLLASGTAIEYGHLVLATGARNRMLDVPNA 118
Query: 1183 -VNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF 1241
+ V YLRT++++ + + + +VVVIG+ FIG+E AA +K V VV
Sbjct: 119 SLPDVLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVM 178
Query: 1242 QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 1301
+ E+ G++ + E + VT L +G T+P DLV+VG+
Sbjct: 179 ARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAA-EGDRVTGVVLSDGNTLPCDLVVVGV 237
Query: 1302 GTVLNTNYLDGKGVEL-NGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHY 1360
G + N G+ G ++V++ L T+ P + A GD A + + +
Sbjct: 238 GVIPNVEIAAAAGLPTAAG---IIVDQQLLTSDPHISAIGDCALFE-SVRFGETMRVESV 293
Query: 1361 QLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLEALKFT 1420
Q A R A + P+FW+ + G AG QV I G + F+
Sbjct: 294 QNATDQARCVAARLTGDAKPYDGYPWFWSDQGDDKLQIVGLTAGFDQVVIRGSVAERSFS 353
Query: 1421 AYYSNADKVLAILTVGM 1437
A+ A K++ I +V
Sbjct: 354 AFCYKAGKLIGIESVNR 370
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} Length = 410 | Back alignment and structure |
|---|
Score = 333 bits (856), Expect = e-102
Identities = 94/377 (24%), Positives = 153/377 (40%), Gaps = 14/377 (3%)
Query: 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQ--LDIKADSILL 100
++G G G T + LR GF G++ I DE LPYDR LSK +L
Sbjct: 2 ATHVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPIL 61
Query: 101 RTEEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADG 159
++Y + I ++ G ++ + D + + I L DGT++ I +ATGS RT++
Sbjct: 62 AEADWYGEARIDMLTGPEVTALDVQ--TRTISLDDGTTLSADAIVIATGSRARTMALPGS 119
Query: 160 -VNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF 218
+ V LRT D + T + ++++G IG E A SVT++ G
Sbjct: 120 QLPGVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELL 179
Query: 219 QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 278
LG+ +G + L GV+ + V F + + +G + AD ++ +
Sbjct: 180 VRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGEGQ--LEQVMASDGRSFVADSALICV 237
Query: 279 GTVLNTNYLDGKGVEL-NGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHY 337
G G+ G V+V+ T GV+A GD+A PL S+ Y
Sbjct: 238 GAEPADQLARQAGLACDRG---VIVDHCGATLAKGVFAVGDVASWPLR--AGGRRSLETY 292
Query: 338 QLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLEALKFT 397
AQ A ++ K S +P WT + G + AG G G +
Sbjct: 293 MNAQRQAAAVAAAILGKNVSAPQLPVSWTEIAGHRMQMAGDIEGPGDFVSRGMPGSGAAL 352
Query: 398 AYYSNADKVLAILTVGM 414
+ ++ A++ V
Sbjct: 353 LFRLQERRIQAVVAVDA 369
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} Length = 410 | Back alignment and structure |
|---|
Score = 333 bits (856), Expect = e-102
Identities = 94/377 (24%), Positives = 153/377 (40%), Gaps = 14/377 (3%)
Query: 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQ--LDIKADSILL 652
++G G G T + LR GF G++ I DE LPYDR LSK +L
Sbjct: 2 ATHVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPIL 61
Query: 653 RTEEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADG 711
++Y + I ++ G ++ + D + + I L DGT++ I +ATGS RT++
Sbjct: 62 AEADWYGEARIDMLTGPEVTALDVQ--TRTISLDDGTTLSADAIVIATGSRARTMALPGS 119
Query: 712 -VNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF 770
+ V LRT D + T + ++++G IG E A SVT++ G
Sbjct: 120 QLPGVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELL 179
Query: 771 QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 830
LG+ +G + L GV+ + V F + + +G + AD ++ +
Sbjct: 180 VRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGEGQ--LEQVMASDGRSFVADSALICV 237
Query: 831 GTVLNTNYLDGKGVEL-NGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHY 889
G G+ G V+V+ T GV+A GD+A PL S+ Y
Sbjct: 238 GAEPADQLARQAGLACDRG---VIVDHCGATLAKGVFAVGDVASWPLR--AGGRRSLETY 292
Query: 890 QLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLEALKFT 949
AQ A ++ K S +P WT + G + AG G G +
Sbjct: 293 MNAQRQAAAVAAAILGKNVSAPQLPVSWTEIAGHRMQMAGDIEGPGDFVSRGMPGSGAAL 352
Query: 950 AYYSNADKVLAILTVGM 966
+ ++ A++ V
Sbjct: 353 LFRLQERRIQAVVAVDA 369
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} Length = 410 | Back alignment and structure |
|---|
Score = 333 bits (856), Expect = e-102
Identities = 94/377 (24%), Positives = 153/377 (40%), Gaps = 14/377 (3%)
Query: 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQ--LDIKADSILL 1123
++G G G T + LR GF G++ I DE LPYDR LSK +L
Sbjct: 2 ATHVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPIL 61
Query: 1124 RTEEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADG 1182
++Y + I ++ G ++ + D + + I L DGT++ I +ATGS RT++
Sbjct: 62 AEADWYGEARIDMLTGPEVTALDVQ--TRTISLDDGTTLSADAIVIATGSRARTMALPGS 119
Query: 1183 -VNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF 1241
+ V LRT D + T + ++++G IG E A SVT++ G
Sbjct: 120 QLPGVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELL 179
Query: 1242 QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 1301
LG+ +G + L GV+ + V F + + +G + AD ++ +
Sbjct: 180 VRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGEGQ--LEQVMASDGRSFVADSALICV 237
Query: 1302 GTVLNTNYLDGKGVEL-NGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHY 1360
G G+ G V+V+ T GV+A GD+A PL S+ Y
Sbjct: 238 GAEPADQLARQAGLACDRG---VIVDHCGATLAKGVFAVGDVASWPLR--AGGRRSLETY 292
Query: 1361 QLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLEALKFT 1420
AQ A ++ K S +P WT + G + AG G G +
Sbjct: 293 MNAQRQAAAVAAAILGKNVSAPQLPVSWTEIAGHRMQMAGDIEGPGDFVSRGMPGSGAAL 352
Query: 1421 AYYSNADKVLAILTVGM 1437
+ ++ A++ V
Sbjct: 353 LFRLQERRIQAVVAVDA 369
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* Length = 408 | Back alignment and structure |
|---|
Score = 309 bits (795), Expect = 2e-94
Identities = 98/379 (25%), Positives = 168/379 (44%), Gaps = 22/379 (5%)
Query: 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQ--LDIKADSILL 100
K +V+G G + + V LRQ G+ G + + DE PYDR LSK A+ I L
Sbjct: 7 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRL 66
Query: 101 RTEEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADG 159
+ + ++ + G S D + L DG ++ + + LATG++PR + G
Sbjct: 67 ---DCKRAPEVEWLLGVTAQSFD--PQAHTVALSDGRTLPYGTLVLATGAAPRALPTLQG 121
Query: 160 VNK-VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF 218
V LRT+EDA I + P+S ++++G IG+E AA + V++V
Sbjct: 122 ATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLM 181
Query: 219 QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 278
+ + + + + ++GV + +V+ LD+GT I AD+V+VGI
Sbjct: 182 SRAAPATLADFVARYHAAQGVDLRFERSVTGSV------DGVVLLDDGTRIAADMVVVGI 235
Query: 279 GTVLNTNYLDGKGVEL-NGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHY 337
G + N G+ +G + V+ Y T P VYA GD+ + + I +
Sbjct: 236 GVLANDALARAAGLACDDG---IFVDAYGRTTCPDVYALGDVTRQR-NPLSGRFERIETW 291
Query: 338 QLAQYHGRIAALNMV-EKKTSLSTIPFFWTMLFGVGFRFAGYAAGHTQVDIV-GDLEALK 395
AQ G A ++V + +P++W+ + + AG A+G ++ L+A K
Sbjct: 292 SNAQNQGIAVARHLVDPTAPGYAELPWYWSDQGALRIQVAGLASGDEEIVRGEVSLDAPK 351
Query: 396 FTAYYSNADKVLAILTVGM 414
FT +++ V
Sbjct: 352 FTLIELQKGRIVGATCVNN 370
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* Length = 408 | Back alignment and structure |
|---|
Score = 309 bits (795), Expect = 2e-94
Identities = 98/379 (25%), Positives = 168/379 (44%), Gaps = 22/379 (5%)
Query: 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQ--LDIKADSILL 652
K +V+G G + + V LRQ G+ G + + DE PYDR LSK A+ I L
Sbjct: 7 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRL 66
Query: 653 RTEEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADG 711
+ + ++ + G S D + L DG ++ + + LATG++PR + G
Sbjct: 67 ---DCKRAPEVEWLLGVTAQSFD--PQAHTVALSDGRTLPYGTLVLATGAAPRALPTLQG 121
Query: 712 VNK-VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF 770
V LRT+EDA I + P+S ++++G IG+E AA + V++V
Sbjct: 122 ATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLM 181
Query: 771 QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 830
+ + + + + ++GV + +V+ LD+GT I AD+V+VGI
Sbjct: 182 SRAAPATLADFVARYHAAQGVDLRFERSVTGSV------DGVVLLDDGTRIAADMVVVGI 235
Query: 831 GTVLNTNYLDGKGVEL-NGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHY 889
G + N G+ +G + V+ Y T P VYA GD+ + + I +
Sbjct: 236 GVLANDALARAAGLACDDG---IFVDAYGRTTCPDVYALGDVTRQR-NPLSGRFERIETW 291
Query: 890 QLAQYHGRIAALNMV-EKKTSLSTIPFFWTMLFGVGFRFAGYAAGHTQVDIV-GDLEALK 947
AQ G A ++V + +P++W+ + + AG A+G ++ L+A K
Sbjct: 292 SNAQNQGIAVARHLVDPTAPGYAELPWYWSDQGALRIQVAGLASGDEEIVRGEVSLDAPK 351
Query: 948 FTAYYSNADKVLAILTVGM 966
FT +++ V
Sbjct: 352 FTLIELQKGRIVGATCVNN 370
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* Length = 408 | Back alignment and structure |
|---|
Score = 309 bits (795), Expect = 2e-94
Identities = 98/379 (25%), Positives = 168/379 (44%), Gaps = 22/379 (5%)
Query: 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQ--LDIKADSILL 1123
K +V+G G + + V LRQ G+ G + + DE PYDR LSK A+ I L
Sbjct: 7 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRL 66
Query: 1124 RTEEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADG 1182
+ + ++ + G S D + L DG ++ + + LATG++PR + G
Sbjct: 67 ---DCKRAPEVEWLLGVTAQSFD--PQAHTVALSDGRTLPYGTLVLATGAAPRALPTLQG 121
Query: 1183 VNK-VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF 1241
V LRT+EDA I + P+S ++++G IG+E AA + V++V
Sbjct: 122 ATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLM 181
Query: 1242 QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 1301
+ + + + + ++GV + +V+ LD+GT I AD+V+VGI
Sbjct: 182 SRAAPATLADFVARYHAAQGVDLRFERSVTGSV------DGVVLLDDGTRIAADMVVVGI 235
Query: 1302 GTVLNTNYLDGKGVEL-NGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHY 1360
G + N G+ +G + V+ Y T P VYA GD+ + + I +
Sbjct: 236 GVLANDALARAAGLACDDG---IFVDAYGRTTCPDVYALGDVTRQR-NPLSGRFERIETW 291
Query: 1361 QLAQYHGRIAALNMV-EKKTSLSTIPFFWTMLFGVGFRFAGYAAGHTQVDIV-GDLEALK 1418
AQ G A ++V + +P++W+ + + AG A+G ++ L+A K
Sbjct: 292 SNAQNQGIAVARHLVDPTAPGYAELPWYWSDQGALRIQVAGLASGDEEIVRGEVSLDAPK 351
Query: 1419 FTAYYSNADKVLAILTVGM 1437
FT +++ V
Sbjct: 352 FTLIELQKGRIVGATCVNN 370
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* Length = 493 | Back alignment and structure |
|---|
Score = 293 bits (752), Expect = 2e-87
Identities = 89/463 (19%), Positives = 165/463 (35%), Gaps = 55/463 (11%)
Query: 586 PMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL-- 643
+ + + + F+++GGG + ++R ++ ++++ LPY R LSK+L
Sbjct: 2 EVPQDKAPSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWF 61
Query: 644 ---------------DIKADSILLRTEEFY---------KDNDIHVIKGKKIIS-DSELN 678
+ K SI + FY ++ + V+ GKK++ D
Sbjct: 62 SDDPNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVR-- 119
Query: 679 EKKIKLQDGTSIDFTKIYLATGSSPRTISQ-----ADGVNKVFYLRTVEDANNIAPHITP 733
+ +KL DG+ I + K +ATG +PR++S A+ ++ R + D ++
Sbjct: 120 DNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISRE 179
Query: 734 ESNVVVIGSSFIGMEAAAFCASKVKS----VTVVGRGAVPFQESLGKEVGERITKLFESK 789
++ +IG F+G E A K ++ V + + L + + + +
Sbjct: 180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRRE 239
Query: 790 GVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVEL-NG 848
GVK + A V S + L +G + D ++ +G N G+E+ +
Sbjct: 240 GVKVMPNAIVQSVG--VSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSD 297
Query: 849 QKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNAS---IGHYQLAQYHGRIAALNMVE 905
VN L+ ++ GD A FY+ + H+ A GR+A NM
Sbjct: 298 FGGFRVNAELQAR-SNIWVAGDAA-----CFYDIKLGRRRVEHHDHAVVSGRLAGENMTG 351
Query: 906 KKTSLSTIPFFWTMLF-GVGFRFAGYAAGHTQVDIVGDLEALKFTA-YYSNADKVLAILT 963
FW+ L VG+ G V + +
Sbjct: 352 AAKPYWHQSMFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSE 411
Query: 964 VGMDPLAAQFAERNIYAVGTKCSHYGAPLVKGS---LGDGRVR 1003
+ A++ + G KG L D V
Sbjct: 412 SETESEASEITIPPSTPAVPQAPVQGEDYGKGVIFYLRDKVVV 454
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* Length = 493 | Back alignment and structure |
|---|
Score = 293 bits (751), Expect = 2e-87
Identities = 86/454 (18%), Positives = 164/454 (36%), Gaps = 54/454 (11%)
Query: 34 PMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL-- 91
+ + + + F+++GGG + ++R ++ ++++ LPY R LSK+L
Sbjct: 2 EVPQDKAPSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWF 61
Query: 92 ---------------DIKADSILLRTEEFY---------KDNDIHVIKGKKIIS-DSELN 126
+ K SI + FY ++ + V+ GKK++ D
Sbjct: 62 SDDPNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVR-- 119
Query: 127 EKKIKLQDGTSIDFTKIYLATGSSPRTISQ-----ADGVNKVFYLRTVEDANNIAPHITP 181
+ +KL DG+ I + K +ATG +PR++S A+ ++ R + D ++
Sbjct: 120 DNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISRE 179
Query: 182 ESNVVVIGSSFIGMEAAAFCASKVKS----VTVVGRGAVPFQESLGKEVGERITKLFESK 237
++ +IG F+G E A K ++ V + + L + + + +
Sbjct: 180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRRE 239
Query: 238 GVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVEL-NG 296
GVK + A V S + L +G + D ++ +G N G+E+ +
Sbjct: 240 GVKVMPNAIVQSVG--VSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSD 297
Query: 297 QKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNAS---IGHYQLAQYHGRIAALNMVE 353
VN L+ ++ GD A FY+ + H+ A GR+A NM
Sbjct: 298 FGGFRVNAELQAR-SNIWVAGDAA-----CFYDIKLGRRRVEHHDHAVVSGRLAGENMTG 351
Query: 354 KKTSLSTIPFFWTMLF-GVGFRFAGYAAGHTQVDIVGDLEALKFT---AYYSNADKVLAI 409
FW+ L VG+ G V + A + + +
Sbjct: 352 AAKPYWHQSMFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSE 411
Query: 410 LTVGMDPLAAQFAEQVLEFPYSSLPHSHRCLGVV 443
+ P + + GV+
Sbjct: 412 SETESEASEITIPPSTPAVPQAPVQGEDYGKGVI 445
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* Length = 493 | Back alignment and structure |
|---|
Score = 292 bits (749), Expect = 4e-87
Identities = 84/447 (18%), Positives = 161/447 (36%), Gaps = 51/447 (11%)
Query: 1057 PMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL-- 1114
+ + + + F+++GGG + ++R ++ ++++ LPY R LSK+L
Sbjct: 2 EVPQDKAPSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWF 61
Query: 1115 ---------------DIKADSILLRTEEFY---------KDNDIHVIKGKKIIS-DSELN 1149
+ K SI + FY ++ + V+ GKK++ D
Sbjct: 62 SDDPNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVR-- 119
Query: 1150 EKKIKLQDGTSIDFTKIYLATGSSPRTISQ-----ADGVNKVFYLRTVEDANNIAPHITP 1204
+ +KL DG+ I + K +ATG +PR++S A+ ++ R + D ++
Sbjct: 120 DNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISRE 179
Query: 1205 ESNVVVIGSSFIGMEAAAFCASKVKS----VTVVGRGAVPFQESLGKEVGERITKLFESK 1260
++ +IG F+G E A K ++ V + + L + + + +
Sbjct: 180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRRE 239
Query: 1261 GVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVEL-NG 1319
GVK + A V S + L +G + D ++ +G N G+E+ +
Sbjct: 240 GVKVMPNAIVQSVG--VSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSD 297
Query: 1320 QKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNAS---IGHYQLAQYHGRIAALNMVE 1376
VN L+ ++ GD A FY+ + H+ A GR+A NM
Sbjct: 298 FGGFRVNAELQAR-SNIWVAGDAA-----CFYDIKLGRRRVEHHDHAVVSGRLAGENMTG 351
Query: 1377 KKTSLSTIPFFWTMLF-GVGFRFAGYAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTV 1435
FW+ L VG+ G V + + I +
Sbjct: 352 AAKPYWHQSMFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSE 411
Query: 1436 GMDPLAAQFAERIKMQKYIQKDQIENN 1462
A + + ++
Sbjct: 412 SETESEASEITIPPSTPAVPQAPVQGE 438
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} Length = 385 | Back alignment and structure |
|---|
Score = 243 bits (622), Expect = 3e-71
Identities = 86/399 (21%), Positives = 160/399 (40%), Gaps = 33/399 (8%)
Query: 1058 MAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL--D 1115
M +++G GP+G + + G + I E +LPY R +L++ + +
Sbjct: 1 MHHHHHHKSTKILILGAGPAGFSAAKAAL--GKCDDITMINSEKYLPYYRPRLNEIIAKN 58
Query: 1116 IKADSILLRTEEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSP 1174
D IL++ ++Y+ N+I VI + S D K + L+ G I + K+ +A+GS
Sbjct: 59 KSIDDILIKKNDWYEKNNIKVITSEFATSIDPN--NKLVTLKSGEKIKYEKLIIASGSIA 116
Query: 1175 RTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVV 1234
I + +++F L + +DA I + +IG +G+E A ++
Sbjct: 117 NKI-KVPHADEIFSLYSYDDALKIKDECKNKGKAFIIGGGILGIELAQAIIDSGTPASIG 175
Query: 1235 GRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPA 1294
P + L ++ G + + G+K +N G I +
Sbjct: 176 IILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNFEEM---------------GDLIRS 220
Query: 1295 DLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKN 1354
VI +G N +++ + ++VN+++ET++ +YA GD+A FY KN
Sbjct: 221 SCVITAVGVKPNLDFIKDTEIASKR--GILVNDHMETSIKDIYACGDVA-----EFYGKN 273
Query: 1355 ASIGHYQLAQYHGRIAALNMVEKKTSLS-TIPFFWTMLFGVGFRFAGYAAGHTQVDIVGD 1413
G +A G +A LN + S S IP + G+ G + +
Sbjct: 274 --PGLINIANKQGEVAGLNACGEDASYSEIIPSPILKVSGISIISCGDIENNKPSKVFRS 331
Query: 1414 LEALKFTAYYSNADKVLAILTVGMDPLAAQFAERIKMQK 1452
+ K+ +K+ A +G L + + I K
Sbjct: 332 TQEDKYIVCMLKENKIDAAAVIGDVSLGTKLKKAIDSSK 370
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} Length = 385 | Back alignment and structure |
|---|
Score = 242 bits (621), Expect = 3e-71
Identities = 83/383 (21%), Positives = 155/383 (40%), Gaps = 33/383 (8%)
Query: 35 MAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL--D 92
M +++G GP+G + + G + I E +LPY R +L++ + +
Sbjct: 1 MHHHHHHKSTKILILGAGPAGFSAAKAAL--GKCDDITMINSEKYLPYYRPRLNEIIAKN 58
Query: 93 IKADSILLRTEEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSP 151
D IL++ ++Y+ N+I VI + S D K + L+ G I + K+ +A+GS
Sbjct: 59 KSIDDILIKKNDWYEKNNIKVITSEFATSIDPN--NKLVTLKSGEKIKYEKLIIASGSIA 116
Query: 152 RTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVV 211
I + +++F L + +DA I + +IG +G+E A ++
Sbjct: 117 NKI-KVPHADEIFSLYSYDDALKIKDECKNKGKAFIIGGGILGIELAQAIIDSGTPASIG 175
Query: 212 GRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPA 271
P + L ++ G + + G+K +N G I +
Sbjct: 176 IILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNFEEM---------------GDLIRS 220
Query: 272 DLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKN 331
VI +G N +++ + ++VN+++ET++ +YA GD+A FY KN
Sbjct: 221 SCVITAVGVKPNLDFIKDTEIASKR--GILVNDHMETSIKDIYACGDVA-----EFYGKN 273
Query: 332 ASIGHYQLAQYHGRIAALNMVEKKTSLS-TIPFFWTMLFGVGFRFAGYAAGHTQVDIVGD 390
G +A G +A LN + S S IP + G+ G + +
Sbjct: 274 --PGLINIANKQGEVAGLNACGEDASYSEIIPSPILKVSGISIISCGDIENNKPSKVFRS 331
Query: 391 LEALKFTAYYSNADKVLAILTVG 413
+ K+ +K+ A +G
Sbjct: 332 TQEDKYIVCMLKENKIDAAAVIG 354
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} Length = 385 | Back alignment and structure |
|---|
Score = 242 bits (621), Expect = 3e-71
Identities = 83/383 (21%), Positives = 155/383 (40%), Gaps = 33/383 (8%)
Query: 587 MAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL--D 644
M +++G GP+G + + G + I E +LPY R +L++ + +
Sbjct: 1 MHHHHHHKSTKILILGAGPAGFSAAKAAL--GKCDDITMINSEKYLPYYRPRLNEIIAKN 58
Query: 645 IKADSILLRTEEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSP 703
D IL++ ++Y+ N+I VI + S D K + L+ G I + K+ +A+GS
Sbjct: 59 KSIDDILIKKNDWYEKNNIKVITSEFATSIDPN--NKLVTLKSGEKIKYEKLIIASGSIA 116
Query: 704 RTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVV 763
I + +++F L + +DA I + +IG +G+E A ++
Sbjct: 117 NKI-KVPHADEIFSLYSYDDALKIKDECKNKGKAFIIGGGILGIELAQAIIDSGTPASIG 175
Query: 764 GRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPA 823
P + L ++ G + + G+K +N G I +
Sbjct: 176 IILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNFEEM---------------GDLIRS 220
Query: 824 DLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKN 883
VI +G N +++ + ++VN+++ET++ +YA GD+A FY KN
Sbjct: 221 SCVITAVGVKPNLDFIKDTEIASKR--GILVNDHMETSIKDIYACGDVA-----EFYGKN 273
Query: 884 ASIGHYQLAQYHGRIAALNMVEKKTSLS-TIPFFWTMLFGVGFRFAGYAAGHTQVDIVGD 942
G +A G +A LN + S S IP + G+ G + +
Sbjct: 274 --PGLINIANKQGEVAGLNACGEDASYSEIIPSPILKVSGISIISCGDIENNKPSKVFRS 331
Query: 943 LEALKFTAYYSNADKVLAILTVG 965
+ K+ +K+ A +G
Sbjct: 332 TQEDKYIVCMLKENKIDAAAVIG 354
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* Length = 384 | Back alignment and structure |
|---|
Score = 192 bits (490), Expect = 9e-54
Identities = 58/287 (20%), Positives = 114/287 (39%), Gaps = 18/287 (6%)
Query: 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL--DIKADSIL 99
+ +++G G +G R+ L IT ++ Y + LS + AD +
Sbjct: 3 ERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKPMLSTGFSKNKDADGLA 62
Query: 100 LRT-EEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTI--- 154
+ + + ++ ++ D ++I + + + + + LA G+ P +
Sbjct: 63 MAEPGAMAEQLNARILTHTRVTGIDPG--HQRIWIGEEE-VRYRDLVLAWGAEPIRVPVE 119
Query: 155 -SQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGR 213
D + + + +ED + V+++G+ IG E A +S + VV
Sbjct: 120 GDAQDAL---YPINDLEDYARFRQAAAGKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAP 176
Query: 214 GAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADL 273
L + + E GV+F + ++S +K + A+L +G IP DL
Sbjct: 177 CEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAG--EGLEAHLSDGEVIPCDL 234
Query: 274 VIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA 320
V+ +G T G+ +N +VV+ L T+ +YA GD A
Sbjct: 235 VVSAVGLRPRTELAFAAGLAVNR--GIVVDRSLRTSHANIYALGDCA 279
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* Length = 384 | Back alignment and structure |
|---|
Score = 192 bits (490), Expect = 9e-54
Identities = 58/287 (20%), Positives = 114/287 (39%), Gaps = 18/287 (6%)
Query: 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL--DIKADSIL 651
+ +++G G +G R+ L IT ++ Y + LS + AD +
Sbjct: 3 ERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKPMLSTGFSKNKDADGLA 62
Query: 652 LRT-EEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTI--- 706
+ + + ++ ++ D ++I + + + + + LA G+ P +
Sbjct: 63 MAEPGAMAEQLNARILTHTRVTGIDPG--HQRIWIGEEE-VRYRDLVLAWGAEPIRVPVE 119
Query: 707 -SQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGR 765
D + + + +ED + V+++G+ IG E A +S + VV
Sbjct: 120 GDAQDAL---YPINDLEDYARFRQAAAGKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAP 176
Query: 766 GAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADL 825
L + + E GV+F + ++S +K + A+L +G IP DL
Sbjct: 177 CEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAG--EGLEAHLSDGEVIPCDL 234
Query: 826 VIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA 872
V+ +G T G+ +N +VV+ L T+ +YA GD A
Sbjct: 235 VVSAVGLRPRTELAFAAGLAVNR--GIVVDRSLRTSHANIYALGDCA 279
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* Length = 384 | Back alignment and structure |
|---|
Score = 192 bits (490), Expect = 9e-54
Identities = 58/287 (20%), Positives = 114/287 (39%), Gaps = 18/287 (6%)
Query: 1065 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL--DIKADSIL 1122
+ +++G G +G R+ L IT ++ Y + LS + AD +
Sbjct: 3 ERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKPMLSTGFSKNKDADGLA 62
Query: 1123 LRT-EEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTI--- 1177
+ + + ++ ++ D ++I + + + + + LA G+ P +
Sbjct: 63 MAEPGAMAEQLNARILTHTRVTGIDPG--HQRIWIGEEE-VRYRDLVLAWGAEPIRVPVE 119
Query: 1178 -SQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGR 1236
D + + + +ED + V+++G+ IG E A +S + VV
Sbjct: 120 GDAQDAL---YPINDLEDYARFRQAAAGKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAP 176
Query: 1237 GAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADL 1296
L + + E GV+F + ++S +K + A+L +G IP DL
Sbjct: 177 CEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAG--EGLEAHLSDGEVIPCDL 234
Query: 1297 VIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA 1343
V+ +G T G+ +N +VV+ L T+ +YA GD A
Sbjct: 235 VVSAVGLRPRTELAFAAGLAVNR--GIVVDRSLRTSHANIYALGDCA 279
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 367 | Back alignment and structure |
|---|
Score = 188 bits (479), Expect = 2e-52
Identities = 72/319 (22%), Positives = 126/319 (39%), Gaps = 28/319 (8%)
Query: 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL--DIKADSIL 99
+ ++VG GP G + L Q ++ I E Y + LS + I + +
Sbjct: 7 HGSKVVIVGNGPGGFELAKQLSQTY---EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLF 63
Query: 100 LRTEEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQAD 158
+ ++Y+ I + ++ D K + + G + + + LATG+ R Q
Sbjct: 64 PYSLDWYRKRGIEIRLAEEAKLIDRG--RKVVITEKGE-VPYDTLVLATGARAR-EPQIK 119
Query: 159 GVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF 218
G + LRT+ DA+ I I ++IG FIG+E A A V ++ RGA+
Sbjct: 120 GKEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFL 179
Query: 219 QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 278
L +E+ I + E GVKF + + + + L N I + I I
Sbjct: 180 G--LDEELSNMIKDMLEETGVKFFLNSELLEANEEGV-------LTNSGFIEGKVKICAI 230
Query: 279 GTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQ 338
G V N + G+ + +++++ T+ VYA GD A + G +
Sbjct: 231 GIVPNVDLARRSGIHTG--RGILIDDNFRTSAKDVYAIGDCA---EY----SGIIAGTAK 281
Query: 339 LAQYHGRIAALNMVEKKTS 357
A R+ A + +
Sbjct: 282 AAMEQARVLADILKGEPRR 300
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 367 | Back alignment and structure |
|---|
Score = 188 bits (479), Expect = 2e-52
Identities = 72/319 (22%), Positives = 126/319 (39%), Gaps = 28/319 (8%)
Query: 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL--DIKADSIL 651
+ ++VG GP G + L Q ++ I E Y + LS + I + +
Sbjct: 7 HGSKVVIVGNGPGGFELAKQLSQTY---EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLF 63
Query: 652 LRTEEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQAD 710
+ ++Y+ I + ++ D K + + G + + + LATG+ R Q
Sbjct: 64 PYSLDWYRKRGIEIRLAEEAKLIDRG--RKVVITEKGE-VPYDTLVLATGARAR-EPQIK 119
Query: 711 GVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF 770
G + LRT+ DA+ I I ++IG FIG+E A A V ++ RGA+
Sbjct: 120 GKEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFL 179
Query: 771 QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 830
L +E+ I + E GVKF + + + + L N I + I I
Sbjct: 180 G--LDEELSNMIKDMLEETGVKFFLNSELLEANEEGV-------LTNSGFIEGKVKICAI 230
Query: 831 GTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQ 890
G V N + G+ + +++++ T+ VYA GD A + G +
Sbjct: 231 GIVPNVDLARRSGIHTG--RGILIDDNFRTSAKDVYAIGDCA---EY----SGIIAGTAK 281
Query: 891 LAQYHGRIAALNMVEKKTS 909
A R+ A + +
Sbjct: 282 AAMEQARVLADILKGEPRR 300
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 367 | Back alignment and structure |
|---|
Score = 188 bits (479), Expect = 2e-52
Identities = 72/319 (22%), Positives = 126/319 (39%), Gaps = 28/319 (8%)
Query: 1065 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL--DIKADSIL 1122
+ ++VG GP G + L Q ++ I E Y + LS + I + +
Sbjct: 7 HGSKVVIVGNGPGGFELAKQLSQTY---EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLF 63
Query: 1123 LRTEEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQAD 1181
+ ++Y+ I + ++ D K + + G + + + LATG+ R Q
Sbjct: 64 PYSLDWYRKRGIEIRLAEEAKLIDRG--RKVVITEKGE-VPYDTLVLATGARAR-EPQIK 119
Query: 1182 GVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF 1241
G + LRT+ DA+ I I ++IG FIG+E A A V ++ RGA+
Sbjct: 120 GKEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFL 179
Query: 1242 QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 1301
L +E+ I + E GVKF + + + + L N I + I I
Sbjct: 180 G--LDEELSNMIKDMLEETGVKFFLNSELLEANEEGV-------LTNSGFIEGKVKICAI 230
Query: 1302 GTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQ 1361
G V N + G+ + +++++ T+ VYA GD A + G +
Sbjct: 231 GIVPNVDLARRSGIHTG--RGILIDDNFRTSAKDVYAIGDCA---EY----SGIIAGTAK 281
Query: 1362 LAQYHGRIAALNMVEKKTS 1380
A R+ A + +
Sbjct: 282 AAMEQARVLADILKGEPRR 300
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} Length = 452 | Back alignment and structure |
|---|
Score = 156 bits (397), Expect = 7e-41
Identities = 69/349 (19%), Positives = 117/349 (33%), Gaps = 75/349 (21%)
Query: 46 FIVVGGGPSGATCVETLRQNGFTGKLYFITDEN-------------F----LPY---DRV 85
+++G +G + R+ + L +
Sbjct: 5 IVIIGASFAGISAAIASRKK----------YPQAEISLIDKQATVGYLSGGLSAYFNHTI 54
Query: 86 KLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQD---GTSIDFT 141
+ TEE + I ++ +++++ D E + I +
Sbjct: 55 N-------ELHEARYITEEELRRQKIQLLLNREVVAMDVE--NQLIAWTRKEEQQWYSYD 105
Query: 142 KIYLATGSSPRT--ISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA- 198
K+ LATG+S + I + + + + A P + V VIG+ IGMEA
Sbjct: 106 KLILATGASQFSTQIRGSQTEK-LLKYKFLSGALAAVPLLENSQTVAVIGAGPIGMEAID 164
Query: 199 AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDV 258
K K+V V + KE+ + K E + V F + V E+ V
Sbjct: 165 FLVKMK-KTVHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEETANGIV 223
Query: 259 TAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGD 318
+ I D I + YLD ++ N + + V+ YL+T+VP V+A GD
Sbjct: 224 L---ETSEQEISCDSGIFALNLHPQLAYLDK-KIQRNLDQTIAVDAYLQTSVPNVFAIGD 279
Query: 319 IA-----------YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 356
YAPL + A G + A N+ EK
Sbjct: 280 CISVMNEPVAETFYAPL-------VN-----NAVRTGLVVANNLEEKTH 316
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} Length = 452 | Back alignment and structure |
|---|
Score = 156 bits (397), Expect = 7e-41
Identities = 69/349 (19%), Positives = 117/349 (33%), Gaps = 75/349 (21%)
Query: 598 FIVVGGGPSGATCVETLRQNGFTGKLYFITDEN-------------F----LPY---DRV 637
+++G +G + R+ + L +
Sbjct: 5 IVIIGASFAGISAAIASRKK----------YPQAEISLIDKQATVGYLSGGLSAYFNHTI 54
Query: 638 KLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQD---GTSIDFT 693
+ TEE + I ++ +++++ D E + I +
Sbjct: 55 N-------ELHEARYITEEELRRQKIQLLLNREVVAMDVE--NQLIAWTRKEEQQWYSYD 105
Query: 694 KIYLATGSSPRT--ISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA- 750
K+ LATG+S + I + + + + A P + V VIG+ IGMEA
Sbjct: 106 KLILATGASQFSTQIRGSQTEK-LLKYKFLSGALAAVPLLENSQTVAVIGAGPIGMEAID 164
Query: 751 AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDV 810
K K+V V + KE+ + K E + V F + V E+ V
Sbjct: 165 FLVKMK-KTVHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEETANGIV 223
Query: 811 TAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGD 870
+ I D I + YLD ++ N + + V+ YL+T+VP V+A GD
Sbjct: 224 L---ETSEQEISCDSGIFALNLHPQLAYLDK-KIQRNLDQTIAVDAYLQTSVPNVFAIGD 279
Query: 871 IA-----------YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 908
YAPL + A G + A N+ EK
Sbjct: 280 CISVMNEPVAETFYAPL-------VN-----NAVRTGLVVANNLEEKTH 316
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} Length = 452 | Back alignment and structure |
|---|
Score = 156 bits (397), Expect = 7e-41
Identities = 69/349 (19%), Positives = 117/349 (33%), Gaps = 75/349 (21%)
Query: 1069 FIVVGGGPSGATCVETLRQNGFTGKLYFITDEN-------------F----LPY---DRV 1108
+++G +G + R+ + L +
Sbjct: 5 IVIIGASFAGISAAIASRKK----------YPQAEISLIDKQATVGYLSGGLSAYFNHTI 54
Query: 1109 KLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQD---GTSIDFT 1164
+ TEE + I ++ +++++ D E + I +
Sbjct: 55 N-------ELHEARYITEEELRRQKIQLLLNREVVAMDVE--NQLIAWTRKEEQQWYSYD 105
Query: 1165 KIYLATGSSPRT--ISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA- 1221
K+ LATG+S + I + + + + A P + V VIG+ IGMEA
Sbjct: 106 KLILATGASQFSTQIRGSQTEK-LLKYKFLSGALAAVPLLENSQTVAVIGAGPIGMEAID 164
Query: 1222 AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDV 1281
K K+V V + KE+ + K E + V F + V E+ V
Sbjct: 165 FLVKMK-KTVHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEETANGIV 223
Query: 1282 TAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGD 1341
+ I D I + YLD ++ N + + V+ YL+T+VP V+A GD
Sbjct: 224 L---ETSEQEISCDSGIFALNLHPQLAYLDK-KIQRNLDQTIAVDAYLQTSVPNVFAIGD 279
Query: 1342 IA-----------YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 1379
YAPL + A G + A N+ EK
Sbjct: 280 CISVMNEPVAETFYAPL-------VN-----NAVRTGLVVANNLEEKTH 316
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Length = 472 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 6e-40
Identities = 67/352 (19%), Positives = 119/352 (33%), Gaps = 69/352 (19%)
Query: 47 IVVGGGPSGATCVETLRQNGFTGKLYFITDEN-----------------FLPY---DRVK 86
+V+G G ++ D +PY V
Sbjct: 7 VVIGAVALGPKAACRFKRL----------DPEAHVTMIDQASRISYGGCGIPYYVSGEVS 56
Query: 87 LSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIIS-DSELNEKKIK---LQDGTSIDFT- 141
+ L +++ E F + D+ + + + D ++ L+ G
Sbjct: 57 NIESLQATPYNVVRDPEFFRINKDVEALVETRAHAIDRA--AHTVEIENLRTGERRTLKY 114
Query: 142 -KIYLATGSSPRT--ISQADGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIGME 196
K+ LA GS + D V + +++A + I+ V++G FIG+E
Sbjct: 115 DKLVLALGSKANRPPVEGMDLAG-VTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLE 173
Query: 197 AA-AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEK 255
A + TVV K + + + E V V E +
Sbjct: 174 MAVSLADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLE--GE 231
Query: 256 NDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYA 315
N A + + T+ ADLVI+ G NT G+EL+ + A++V+ + T+ P ++A
Sbjct: 232 NGKVARVITDKRTLDADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRTSDPDIFA 291
Query: 316 GGDIA-----------YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 356
GGD + PL S +A GR+ N+ +
Sbjct: 292 GGDCVTIPNLVTGKPGFFPL-------GS-----MANRQGRVIGTNLADGDA 331
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Length = 472 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 6e-40
Identities = 67/352 (19%), Positives = 119/352 (33%), Gaps = 69/352 (19%)
Query: 599 IVVGGGPSGATCVETLRQNGFTGKLYFITDEN-----------------FLPY---DRVK 638
+V+G G ++ D +PY V
Sbjct: 7 VVIGAVALGPKAACRFKRL----------DPEAHVTMIDQASRISYGGCGIPYYVSGEVS 56
Query: 639 LSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIIS-DSELNEKKIK---LQDGTSIDFT- 693
+ L +++ E F + D+ + + + D ++ L+ G
Sbjct: 57 NIESLQATPYNVVRDPEFFRINKDVEALVETRAHAIDRA--AHTVEIENLRTGERRTLKY 114
Query: 694 -KIYLATGSSPRT--ISQADGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIGME 748
K+ LA GS + D V + +++A + I+ V++G FIG+E
Sbjct: 115 DKLVLALGSKANRPPVEGMDLAG-VTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLE 173
Query: 749 AA-AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEK 807
A + TVV K + + + E V V E +
Sbjct: 174 MAVSLADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLE--GE 231
Query: 808 NDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYA 867
N A + + T+ ADLVI+ G NT G+EL+ + A++V+ + T+ P ++A
Sbjct: 232 NGKVARVITDKRTLDADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRTSDPDIFA 291
Query: 868 GGDIA-----------YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 908
GGD + PL S +A GR+ N+ +
Sbjct: 292 GGDCVTIPNLVTGKPGFFPL-------GS-----MANRQGRVIGTNLADGDA 331
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Length = 472 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 6e-40
Identities = 67/352 (19%), Positives = 119/352 (33%), Gaps = 69/352 (19%)
Query: 1070 IVVGGGPSGATCVETLRQNGFTGKLYFITDEN-----------------FLPY---DRVK 1109
+V+G G ++ D +PY V
Sbjct: 7 VVIGAVALGPKAACRFKRL----------DPEAHVTMIDQASRISYGGCGIPYYVSGEVS 56
Query: 1110 LSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIIS-DSELNEKKIK---LQDGTSIDFT- 1164
+ L +++ E F + D+ + + + D ++ L+ G
Sbjct: 57 NIESLQATPYNVVRDPEFFRINKDVEALVETRAHAIDRA--AHTVEIENLRTGERRTLKY 114
Query: 1165 -KIYLATGSSPRT--ISQADGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIGME 1219
K+ LA GS + D V + +++A + I+ V++G FIG+E
Sbjct: 115 DKLVLALGSKANRPPVEGMDLAG-VTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLE 173
Query: 1220 AA-AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEK 1278
A + TVV K + + + E V V E +
Sbjct: 174 MAVSLADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLE--GE 231
Query: 1279 NDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYA 1338
N A + + T+ ADLVI+ G NT G+EL+ + A++V+ + T+ P ++A
Sbjct: 232 NGKVARVITDKRTLDADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRTSDPDIFA 291
Query: 1339 GGDIA-----------YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 1379
GGD + PL S +A GR+ N+ +
Sbjct: 292 GGDCVTIPNLVTGKPGFFPL-------GS-----MANRQGRVIGTNLADGDA 331
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588 | Back alignment and structure |
|---|
Score = 156 bits (396), Expect = 1e-39
Identities = 72/344 (20%), Positives = 128/344 (37%), Gaps = 58/344 (16%)
Query: 46 FIVVGGGPSGATCVETLRQNGFTGKLYFITDEN-----------------FLPY---DRV 85
+VVGG GA+ LR+ E LPY +
Sbjct: 39 IVVVGGVAGGASVAARLRRL----------SEEDEIIMVERGEYISFANCGLPYYIGGVI 88
Query: 86 KLSKQLDIKADSILLRT-EEFYKDNDIHVIKGKKIIS-DSELNEKKIK---LQDGTSIDF 140
+ +L++T E K ++ + +++ + E EK I + + +
Sbjct: 89 T-------ERQKLLVQTVERMSKRFNLDIRVLSEVVKINKE--EKTITIKNVTTNETYNE 139
Query: 141 T--KIYLATGSSPRT--ISQADGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIG 194
+ L+ G+ P I + +F LR V D + I +I + + VIG FIG
Sbjct: 140 AYDVLILSPGAKPIVPSIPGIEEAKALFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIG 199
Query: 195 MEAA-AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKN 253
+E ++ VT+V + E+ + + ++ V+ V + V + E+N
Sbjct: 200 VEMVENLRERGIE-VTLVEMANQVMP-PIDYEMAAYVHEHMKNHDVELVFEDGVDALEEN 257
Query: 254 EKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGV 313
L +G+ I D++I+ IG ++ G G+ L + + VNE +T+ P +
Sbjct: 258 GAVVR----LKSGSVIQTDMLILAIGVQPESSLAKGAGLALGVRGTIKVNEKFQTSDPHI 313
Query: 314 YAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS 357
YA GD I A GR+ A + S
Sbjct: 314 YAIGDAI-EVKDFVTETETMIPLAWPANRQGRMLADIIHGHTDS 356
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588 | Back alignment and structure |
|---|
Score = 156 bits (396), Expect = 1e-39
Identities = 72/344 (20%), Positives = 128/344 (37%), Gaps = 58/344 (16%)
Query: 598 FIVVGGGPSGATCVETLRQNGFTGKLYFITDEN-----------------FLPY---DRV 637
+VVGG GA+ LR+ E LPY +
Sbjct: 39 IVVVGGVAGGASVAARLRRL----------SEEDEIIMVERGEYISFANCGLPYYIGGVI 88
Query: 638 KLSKQLDIKADSILLRT-EEFYKDNDIHVIKGKKIIS-DSELNEKKIK---LQDGTSIDF 692
+ +L++T E K ++ + +++ + E EK I + + +
Sbjct: 89 T-------ERQKLLVQTVERMSKRFNLDIRVLSEVVKINKE--EKTITIKNVTTNETYNE 139
Query: 693 T--KIYLATGSSPRT--ISQADGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIG 746
+ L+ G+ P I + +F LR V D + I +I + + VIG FIG
Sbjct: 140 AYDVLILSPGAKPIVPSIPGIEEAKALFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIG 199
Query: 747 MEAA-AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKN 805
+E ++ VT+V + E+ + + ++ V+ V + V + E+N
Sbjct: 200 VEMVENLRERGIE-VTLVEMANQVMP-PIDYEMAAYVHEHMKNHDVELVFEDGVDALEEN 257
Query: 806 EKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGV 865
L +G+ I D++I+ IG ++ G G+ L + + VNE +T+ P +
Sbjct: 258 GAVVR----LKSGSVIQTDMLILAIGVQPESSLAKGAGLALGVRGTIKVNEKFQTSDPHI 313
Query: 866 YAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS 909
YA GD I A GR+ A + S
Sbjct: 314 YAIGDAI-EVKDFVTETETMIPLAWPANRQGRMLADIIHGHTDS 356
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588 | Back alignment and structure |
|---|
Score = 156 bits (396), Expect = 1e-39
Identities = 72/344 (20%), Positives = 128/344 (37%), Gaps = 58/344 (16%)
Query: 1069 FIVVGGGPSGATCVETLRQNGFTGKLYFITDEN-----------------FLPY---DRV 1108
+VVGG GA+ LR+ E LPY +
Sbjct: 39 IVVVGGVAGGASVAARLRRL----------SEEDEIIMVERGEYISFANCGLPYYIGGVI 88
Query: 1109 KLSKQLDIKADSILLRT-EEFYKDNDIHVIKGKKIIS-DSELNEKKIK---LQDGTSIDF 1163
+ +L++T E K ++ + +++ + E EK I + + +
Sbjct: 89 T-------ERQKLLVQTVERMSKRFNLDIRVLSEVVKINKE--EKTITIKNVTTNETYNE 139
Query: 1164 T--KIYLATGSSPRT--ISQADGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIG 1217
+ L+ G+ P I + +F LR V D + I +I + + VIG FIG
Sbjct: 140 AYDVLILSPGAKPIVPSIPGIEEAKALFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIG 199
Query: 1218 MEAA-AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKN 1276
+E ++ VT+V + E+ + + ++ V+ V + V + E+N
Sbjct: 200 VEMVENLRERGIE-VTLVEMANQVMP-PIDYEMAAYVHEHMKNHDVELVFEDGVDALEEN 257
Query: 1277 EKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGV 1336
L +G+ I D++I+ IG ++ G G+ L + + VNE +T+ P +
Sbjct: 258 GAVVR----LKSGSVIQTDMLILAIGVQPESSLAKGAGLALGVRGTIKVNEKFQTSDPHI 313
Query: 1337 YAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS 1380
YA GD I A GR+ A + S
Sbjct: 314 YAIGDAI-EVKDFVTETETMIPLAWPANRQGRMLADIIHGHTDS 356
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* Length = 447 | Back alignment and structure |
|---|
Score = 152 bits (387), Expect = 2e-39
Identities = 79/352 (22%), Positives = 129/352 (36%), Gaps = 79/352 (22%)
Query: 47 IVVGGGPSGATCVETLRQNGFTGKLYFITDENF-----------------LPY---DRVK 86
IV+G G VE L + + +VK
Sbjct: 4 IVLGSSHGGYEAVEELLNL----------HPDAEIQWYEKGDFISFLSAGMQLYLEGKVK 53
Query: 87 LSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIIS-DSELNEKKIK---LQDGTSIDFT- 141
+S+ T E + ++V +I + + E ++ L G
Sbjct: 54 -------DVNSVRYMTGEKMESRGVNVFSNTEITAIQPK--EHQVTVKDLVSGEERVENY 104
Query: 142 -KIYLATGSSPRT--ISQADGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIGME 196
K+ ++ G+ P I D N ++ +R + A + NVVVIGS +IG+E
Sbjct: 105 DKLIISPGAVPFELDIPGKDLDN-IYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIE 163
Query: 197 AA-AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEK 255
AA AF + K VTV+ P L KE + +T+ E+ + V +E + +
Sbjct: 164 AAEAFAKAG-KKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGR 222
Query: 256 NDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYA 315
+ + ADLV+V +G NT +L G +EL+ + +EY+ T+ P V+A
Sbjct: 223 VQKV---VTDKNAYDADLVVVAVGVRPNTAWLKG-TLELHPNGLIKTDEYMRTSEPDVFA 278
Query: 316 GGDIA-----------YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 356
GD L A+ A+ GR A N+ E
Sbjct: 279 VGDATLIKYNPADTEVNIAL-------AT-----NARKQGRFAVKNLEEPVK 318
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* Length = 447 | Back alignment and structure |
|---|
Score = 152 bits (387), Expect = 2e-39
Identities = 79/352 (22%), Positives = 129/352 (36%), Gaps = 79/352 (22%)
Query: 599 IVVGGGPSGATCVETLRQNGFTGKLYFITDENF-----------------LPY---DRVK 638
IV+G G VE L + + +VK
Sbjct: 4 IVLGSSHGGYEAVEELLNL----------HPDAEIQWYEKGDFISFLSAGMQLYLEGKVK 53
Query: 639 LSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIIS-DSELNEKKIK---LQDGTSIDFT- 693
+S+ T E + ++V +I + + E ++ L G
Sbjct: 54 -------DVNSVRYMTGEKMESRGVNVFSNTEITAIQPK--EHQVTVKDLVSGEERVENY 104
Query: 694 -KIYLATGSSPRT--ISQADGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIGME 748
K+ ++ G+ P I D N ++ +R + A + NVVVIGS +IG+E
Sbjct: 105 DKLIISPGAVPFELDIPGKDLDN-IYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIE 163
Query: 749 AA-AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEK 807
AA AF + K VTV+ P L KE + +T+ E+ + V +E + +
Sbjct: 164 AAEAFAKAG-KKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGR 222
Query: 808 NDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYA 867
+ + ADLV+V +G NT +L G +EL+ + +EY+ T+ P V+A
Sbjct: 223 VQKV---VTDKNAYDADLVVVAVGVRPNTAWLKG-TLELHPNGLIKTDEYMRTSEPDVFA 278
Query: 868 GGDIA-----------YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 908
GD L A+ A+ GR A N+ E
Sbjct: 279 VGDATLIKYNPADTEVNIAL-------AT-----NARKQGRFAVKNLEEPVK 318
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* Length = 447 | Back alignment and structure |
|---|
Score = 152 bits (387), Expect = 2e-39
Identities = 79/352 (22%), Positives = 129/352 (36%), Gaps = 79/352 (22%)
Query: 1070 IVVGGGPSGATCVETLRQNGFTGKLYFITDENF-----------------LPY---DRVK 1109
IV+G G VE L + + +VK
Sbjct: 4 IVLGSSHGGYEAVEELLNL----------HPDAEIQWYEKGDFISFLSAGMQLYLEGKVK 53
Query: 1110 LSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIIS-DSELNEKKIK---LQDGTSIDFT- 1164
+S+ T E + ++V +I + + E ++ L G
Sbjct: 54 -------DVNSVRYMTGEKMESRGVNVFSNTEITAIQPK--EHQVTVKDLVSGEERVENY 104
Query: 1165 -KIYLATGSSPRT--ISQADGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIGME 1219
K+ ++ G+ P I D N ++ +R + A + NVVVIGS +IG+E
Sbjct: 105 DKLIISPGAVPFELDIPGKDLDN-IYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIE 163
Query: 1220 AA-AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEK 1278
AA AF + K VTV+ P L KE + +T+ E+ + V +E + +
Sbjct: 164 AAEAFAKAG-KKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGR 222
Query: 1279 NDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYA 1338
+ + ADLV+V +G NT +L G +EL+ + +EY+ T+ P V+A
Sbjct: 223 VQKV---VTDKNAYDADLVVVAVGVRPNTAWLKG-TLELHPNGLIKTDEYMRTSEPDVFA 278
Query: 1339 GGDIA-----------YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 1379
GD L A+ A+ GR A N+ E
Sbjct: 279 VGDATLIKYNPADTEVNIAL-------AT-----NARKQGRFAVKNLEEPVK 318
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} Length = 452 | Back alignment and structure |
|---|
Score = 151 bits (385), Expect = 3e-39
Identities = 76/350 (21%), Positives = 128/350 (36%), Gaps = 74/350 (21%)
Query: 47 IVVGGGPSGATCVETLRQNGFTGKLYFITDEN-------------F----LPY---DRVK 86
IVVG +G V+ + + F + +K
Sbjct: 4 IVVGCTHAGTFAVKQTIAD----------HPDADVTAYEMNDNISFLSCGIALYLGKEIK 53
Query: 87 LSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIIS-DSELNEKKIK---LQDGTSIDFT- 141
+ + + E + +V ++ + D E K IK L
Sbjct: 54 -----NNDPRGLFYSSPEELSNLGANVQMRHQVTNVDPE--TKTIKVKDLITNEEKTEAY 106
Query: 142 -KIYLATGSSPRT--ISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA 198
K+ + TGS P I D V+ + DA + + +IGS +IG E A
Sbjct: 107 DKLIMTTGSKPTVPPIPGIDSSR-VYLCKNYNDAKKLFEEAPKAKTITIIGSGYIGAELA 165
Query: 199 -AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKND 257
A+ +V ++ + KE + + K +E+ GV V+ + V++FE E +D
Sbjct: 166 EAYSNQN-YNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFE--EVDD 222
Query: 258 VTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGG 317
+G I +D+ I+ IG NT L G V + A++ +EY+ ++ ++A G
Sbjct: 223 EIITKTLDGKEIKSDIAILCIGFRPNTELLKG-KVAMLDNGAIITDEYMHSSNRDIFAAG 281
Query: 318 DIA-----------YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 356
D A Y PL A+ A GR+ LN+ E K
Sbjct: 282 DSAAVHYNPTNSNAYIPL-------AT-----NAVRQGRLVGLNLTEDKV 319
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} Length = 452 | Back alignment and structure |
|---|
Score = 151 bits (385), Expect = 3e-39
Identities = 76/350 (21%), Positives = 128/350 (36%), Gaps = 74/350 (21%)
Query: 599 IVVGGGPSGATCVETLRQNGFTGKLYFITDEN-------------F----LPY---DRVK 638
IVVG +G V+ + + F + +K
Sbjct: 4 IVVGCTHAGTFAVKQTIAD----------HPDADVTAYEMNDNISFLSCGIALYLGKEIK 53
Query: 639 LSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIIS-DSELNEKKIK---LQDGTSIDFT- 693
+ + + E + +V ++ + D E K IK L
Sbjct: 54 -----NNDPRGLFYSSPEELSNLGANVQMRHQVTNVDPE--TKTIKVKDLITNEEKTEAY 106
Query: 694 -KIYLATGSSPRT--ISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA 750
K+ + TGS P I D V+ + DA + + +IGS +IG E A
Sbjct: 107 DKLIMTTGSKPTVPPIPGIDSSR-VYLCKNYNDAKKLFEEAPKAKTITIIGSGYIGAELA 165
Query: 751 -AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKND 809
A+ +V ++ + KE + + K +E+ GV V+ + V++FE E +D
Sbjct: 166 EAYSNQN-YNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFE--EVDD 222
Query: 810 VTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGG 869
+G I +D+ I+ IG NT L G V + A++ +EY+ ++ ++A G
Sbjct: 223 EIITKTLDGKEIKSDIAILCIGFRPNTELLKG-KVAMLDNGAIITDEYMHSSNRDIFAAG 281
Query: 870 DIA-----------YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 908
D A Y PL A+ A GR+ LN+ E K
Sbjct: 282 DSAAVHYNPTNSNAYIPL-------AT-----NAVRQGRLVGLNLTEDKV 319
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} Length = 452 | Back alignment and structure |
|---|
Score = 151 bits (385), Expect = 3e-39
Identities = 76/350 (21%), Positives = 128/350 (36%), Gaps = 74/350 (21%)
Query: 1070 IVVGGGPSGATCVETLRQNGFTGKLYFITDEN-------------F----LPY---DRVK 1109
IVVG +G V+ + + F + +K
Sbjct: 4 IVVGCTHAGTFAVKQTIAD----------HPDADVTAYEMNDNISFLSCGIALYLGKEIK 53
Query: 1110 LSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIIS-DSELNEKKIK---LQDGTSIDFT- 1164
+ + + E + +V ++ + D E K IK L
Sbjct: 54 -----NNDPRGLFYSSPEELSNLGANVQMRHQVTNVDPE--TKTIKVKDLITNEEKTEAY 106
Query: 1165 -KIYLATGSSPRT--ISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA 1221
K+ + TGS P I D V+ + DA + + +IGS +IG E A
Sbjct: 107 DKLIMTTGSKPTVPPIPGIDSSR-VYLCKNYNDAKKLFEEAPKAKTITIIGSGYIGAELA 165
Query: 1222 -AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKND 1280
A+ +V ++ + KE + + K +E+ GV V+ + V++FE E +D
Sbjct: 166 EAYSNQN-YNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFE--EVDD 222
Query: 1281 VTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGG 1340
+G I +D+ I+ IG NT L G V + A++ +EY+ ++ ++A G
Sbjct: 223 EIITKTLDGKEIKSDIAILCIGFRPNTELLKG-KVAMLDNGAIITDEYMHSSNRDIFAAG 281
Query: 1341 DIA-----------YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 1379
D A Y PL A+ A GR+ LN+ E K
Sbjct: 282 DSAAVHYNPTNSNAYIPL-------AT-----NAVRQGRLVGLNLTEDKV 319
|
| >2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* Length = 490 | Back alignment and structure |
|---|
Score = 150 bits (380), Expect = 3e-38
Identities = 62/291 (21%), Positives = 112/291 (38%), Gaps = 49/291 (16%)
Query: 96 DSILLRTEEFYKDNDIHVIKGKKIIS-DSELNEKKIK-LQDGTSIDFT--KIYLATGSSP 151
+ + +E + V + S D + K + L DG + T K+ ATGS P
Sbjct: 92 EGLFYSDKEELESLGAKVYMESPVQSIDYD--AKTVTALVDGKNHVETYDKLIFATGSQP 149
Query: 152 ------------RTISQADGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIGMEA 197
++ + + +++ +++ ++ + + V V+G+ +IG+E
Sbjct: 150 ILPPIKGAEIKEGSLEFEATLENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVEL 209
Query: 198 A-AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKN 256
A AF K V ++ +++ + + K E G++ V N K
Sbjct: 210 AEAFQRKG-KEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVKEVAGNGKV 268
Query: 257 DVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAG 316
+ + + D+VI+ +G NT +G ++L A +VN+ ET++PGVYA
Sbjct: 269 EKI---ITDKNEYDVDMVILAVGFRPNTTLGNG-KIDLFRNGAFLVNKRQETSIPGVYAI 324
Query: 317 GDIA-----------YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 356
GD A Y L AS A G +AA N
Sbjct: 325 GDCATIYDNATRDTNYIAL-------AS-----NAVRTGIVAAHNACGTDL 363
|
| >2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* Length = 490 | Back alignment and structure |
|---|
Score = 150 bits (380), Expect = 3e-38
Identities = 62/291 (21%), Positives = 112/291 (38%), Gaps = 49/291 (16%)
Query: 648 DSILLRTEEFYKDNDIHVIKGKKIIS-DSELNEKKIK-LQDGTSIDFT--KIYLATGSSP 703
+ + +E + V + S D + K + L DG + T K+ ATGS P
Sbjct: 92 EGLFYSDKEELESLGAKVYMESPVQSIDYD--AKTVTALVDGKNHVETYDKLIFATGSQP 149
Query: 704 ------------RTISQADGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIGMEA 749
++ + + +++ +++ ++ + + V V+G+ +IG+E
Sbjct: 150 ILPPIKGAEIKEGSLEFEATLENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVEL 209
Query: 750 A-AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKN 808
A AF K V ++ +++ + + K E G++ V N K
Sbjct: 210 AEAFQRKG-KEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVKEVAGNGKV 268
Query: 809 DVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAG 868
+ + + D+VI+ +G NT +G ++L A +VN+ ET++PGVYA
Sbjct: 269 EKI---ITDKNEYDVDMVILAVGFRPNTTLGNG-KIDLFRNGAFLVNKRQETSIPGVYAI 324
Query: 869 GDIA-----------YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 908
GD A Y L AS A G +AA N
Sbjct: 325 GDCATIYDNATRDTNYIAL-------AS-----NAVRTGIVAAHNACGTDL 363
|
| >2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* Length = 490 | Back alignment and structure |
|---|
Score = 150 bits (380), Expect = 3e-38
Identities = 62/291 (21%), Positives = 112/291 (38%), Gaps = 49/291 (16%)
Query: 1119 DSILLRTEEFYKDNDIHVIKGKKIIS-DSELNEKKIK-LQDGTSIDFT--KIYLATGSSP 1174
+ + +E + V + S D + K + L DG + T K+ ATGS P
Sbjct: 92 EGLFYSDKEELESLGAKVYMESPVQSIDYD--AKTVTALVDGKNHVETYDKLIFATGSQP 149
Query: 1175 ------------RTISQADGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIGMEA 1220
++ + + +++ +++ ++ + + V V+G+ +IG+E
Sbjct: 150 ILPPIKGAEIKEGSLEFEATLENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVEL 209
Query: 1221 A-AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKN 1279
A AF K V ++ +++ + + K E G++ V N K
Sbjct: 210 AEAFQRKG-KEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVKEVAGNGKV 268
Query: 1280 DVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAG 1339
+ + + D+VI+ +G NT +G ++L A +VN+ ET++PGVYA
Sbjct: 269 EKI---ITDKNEYDVDMVILAVGFRPNTTLGNG-KIDLFRNGAFLVNKRQETSIPGVYAI 324
Query: 1340 GDIA-----------YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 1379
GD A Y L AS A G +AA N
Sbjct: 325 GDCATIYDNATRDTNYIAL-------AS-----NAVRTGIVAAHNACGTDL 363
|
| >1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A {Staphylococcus aureus} Length = 438 | Back alignment and structure |
|---|
Score = 146 bits (372), Expect = 1e-37
Identities = 71/351 (20%), Positives = 130/351 (37%), Gaps = 82/351 (23%)
Query: 47 IVVGGGPSGATCVETLRQNGFTGKLYFITDEN-------------F----LPY---DRVK 86
+VVG GATC +R+ D+ F LPY + V+
Sbjct: 5 VVVGAVAGGATCASQIRRL----------DKESDIIIFEKDRDMSFANCALPYVIGEVVE 54
Query: 87 LSKQLDIKADSILLRT-EEFYKDNDIHVIKGKKIIS-DSELNEKKIK---LQDGTSIDFT 141
L T E+FY I V ++I+ + E + + + + +
Sbjct: 55 -------DRRYALAYTPEKFYDRKQITVKTYHEVIAINDE--RQTVSVLNRKTNEQFEES 105
Query: 142 --KIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIGMEA 197
K+ L+ G+S + F LR +ED + I I V+V+G+ ++ +E
Sbjct: 106 YDKLILSPGASAN-SLGFESDI-TFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEV 163
Query: 198 A-AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKN 256
T++ R + + ++ + I + + + + + +++ NE
Sbjct: 164 LENLYERG-LHPTLIHRSDKINK-LMDADMNQPILDELDKREIPYRLNEEINAINGNE-- 219
Query: 257 DVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAG 316
+G D++I G+GT N+ +++ ++L+ + + VN+ ETNVP +YA
Sbjct: 220 ----ITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAI 275
Query: 317 GDIA-----------YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 356
GDIA PL A A I A + T
Sbjct: 276 GDIATSHYRHVDLPASVPL-------AW-----GAHRAASIVAEQIAGNDT 314
|
| >1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A {Staphylococcus aureus} Length = 438 | Back alignment and structure |
|---|
Score = 146 bits (372), Expect = 1e-37
Identities = 71/351 (20%), Positives = 130/351 (37%), Gaps = 82/351 (23%)
Query: 599 IVVGGGPSGATCVETLRQNGFTGKLYFITDEN-------------F----LPY---DRVK 638
+VVG GATC +R+ D+ F LPY + V+
Sbjct: 5 VVVGAVAGGATCASQIRRL----------DKESDIIIFEKDRDMSFANCALPYVIGEVVE 54
Query: 639 LSKQLDIKADSILLRT-EEFYKDNDIHVIKGKKIIS-DSELNEKKIK---LQDGTSIDFT 693
L T E+FY I V ++I+ + E + + + + +
Sbjct: 55 -------DRRYALAYTPEKFYDRKQITVKTYHEVIAINDE--RQTVSVLNRKTNEQFEES 105
Query: 694 --KIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIGMEA 749
K+ L+ G+S + F LR +ED + I I V+V+G+ ++ +E
Sbjct: 106 YDKLILSPGASAN-SLGFESDI-TFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEV 163
Query: 750 A-AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKN 808
T++ R + + ++ + I + + + + + +++ NE
Sbjct: 164 LENLYERG-LHPTLIHRSDKINK-LMDADMNQPILDELDKREIPYRLNEEINAINGNE-- 219
Query: 809 DVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAG 868
+G D++I G+GT N+ +++ ++L+ + + VN+ ETNVP +YA
Sbjct: 220 ----ITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAI 275
Query: 869 GDIA-----------YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 908
GDIA PL A A I A + T
Sbjct: 276 GDIATSHYRHVDLPASVPL-------AW-----GAHRAASIVAEQIAGNDT 314
|
| >1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A {Staphylococcus aureus} Length = 438 | Back alignment and structure |
|---|
Score = 146 bits (372), Expect = 1e-37
Identities = 71/351 (20%), Positives = 130/351 (37%), Gaps = 82/351 (23%)
Query: 1070 IVVGGGPSGATCVETLRQNGFTGKLYFITDEN-------------F----LPY---DRVK 1109
+VVG GATC +R+ D+ F LPY + V+
Sbjct: 5 VVVGAVAGGATCASQIRRL----------DKESDIIIFEKDRDMSFANCALPYVIGEVVE 54
Query: 1110 LSKQLDIKADSILLRT-EEFYKDNDIHVIKGKKIIS-DSELNEKKIK---LQDGTSIDFT 1164
L T E+FY I V ++I+ + E + + + + +
Sbjct: 55 -------DRRYALAYTPEKFYDRKQITVKTYHEVIAINDE--RQTVSVLNRKTNEQFEES 105
Query: 1165 --KIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIGMEA 1220
K+ L+ G+S + F LR +ED + I I V+V+G+ ++ +E
Sbjct: 106 YDKLILSPGASAN-SLGFESDI-TFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEV 163
Query: 1221 A-AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKN 1279
T++ R + + ++ + I + + + + + +++ NE
Sbjct: 164 LENLYERG-LHPTLIHRSDKINK-LMDADMNQPILDELDKREIPYRLNEEINAINGNE-- 219
Query: 1280 DVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAG 1339
+G D++I G+GT N+ +++ ++L+ + + VN+ ETNVP +YA
Sbjct: 220 ----ITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAI 275
Query: 1340 GDIA-----------YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 1379
GDIA PL A A I A + T
Sbjct: 276 GDIATSHYRHVDLPASVPL-------AW-----GAHRAASIVAEQIAGNDT 314
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* Length = 480 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 2e-37
Identities = 85/354 (24%), Positives = 144/354 (40%), Gaps = 80/354 (22%)
Query: 46 FIVVGGGPSGATCVETLRQNGFTGKLYFITDEN-------------F----LPY---DRV 85
++++GG +G + + +N DEN + LPY +
Sbjct: 39 YVIIGGDAAGMSAAMQIVRN----------DENANVVTLEKGEIYSYAQCGLPYVISGAI 88
Query: 86 KLSKQLDIKADSILLRT-EEFYKDNDIHVIKGKKIIS-DSELNEKKIK---LQDGTSIDF 140
+ ++ R + F I ++ D+E +K + + +F
Sbjct: 89 A-------STEKLIARNVKTFRDKYGIDAKVRHEVTKVDTE--KKIVYAEHTKTKDVFEF 139
Query: 141 T--KIYLATGSSPRT--ISQADGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIG 194
+ ++ +ATG P D V L+T+ DA I + +V +IG IG
Sbjct: 140 SYDRLLIATGVRPVMPEWEGRDLQG-VHLLKTIPDAERILKTLETNKVEDVTIIGGGAIG 198
Query: 195 MEAA-AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKN 253
+E A F K V ++ R ++ E I K + ++ + NV +F+ N
Sbjct: 199 LEMAETFVELG-KKVRMIERNDHIGT-IYDGDMAEYIYKEADKHHIEILTNENVKAFKGN 256
Query: 254 EKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGV 313
E+ V A D GT ADLV+V +G NT++L+G + N + A+ VN Y++TNV V
Sbjct: 257 ER--VEAVETDKGT-YKADLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQTNVQDV 313
Query: 314 YAGGDIA-----------YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 356
YA GD A + P+ + A GR+A LNM++K+
Sbjct: 314 YAAGDCATHYHVIKEIHDHIPI-------GT-----TANKQGRLAGLNMLDKRR 355
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* Length = 480 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 2e-37
Identities = 85/354 (24%), Positives = 144/354 (40%), Gaps = 80/354 (22%)
Query: 598 FIVVGGGPSGATCVETLRQNGFTGKLYFITDEN-------------F----LPY---DRV 637
++++GG +G + + +N DEN + LPY +
Sbjct: 39 YVIIGGDAAGMSAAMQIVRN----------DENANVVTLEKGEIYSYAQCGLPYVISGAI 88
Query: 638 KLSKQLDIKADSILLRT-EEFYKDNDIHVIKGKKIIS-DSELNEKKIK---LQDGTSIDF 692
+ ++ R + F I ++ D+E +K + + +F
Sbjct: 89 A-------STEKLIARNVKTFRDKYGIDAKVRHEVTKVDTE--KKIVYAEHTKTKDVFEF 139
Query: 693 T--KIYLATGSSPRT--ISQADGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIG 746
+ ++ +ATG P D V L+T+ DA I + +V +IG IG
Sbjct: 140 SYDRLLIATGVRPVMPEWEGRDLQG-VHLLKTIPDAERILKTLETNKVEDVTIIGGGAIG 198
Query: 747 MEAA-AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKN 805
+E A F K V ++ R ++ E I K + ++ + NV +F+ N
Sbjct: 199 LEMAETFVELG-KKVRMIERNDHIGT-IYDGDMAEYIYKEADKHHIEILTNENVKAFKGN 256
Query: 806 EKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGV 865
E+ V A D GT ADLV+V +G NT++L+G + N + A+ VN Y++TNV V
Sbjct: 257 ER--VEAVETDKGT-YKADLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQTNVQDV 313
Query: 866 YAGGDIA-----------YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 908
YA GD A + P+ + A GR+A LNM++K+
Sbjct: 314 YAAGDCATHYHVIKEIHDHIPI-------GT-----TANKQGRLAGLNMLDKRR 355
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* Length = 480 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 2e-37
Identities = 85/354 (24%), Positives = 144/354 (40%), Gaps = 80/354 (22%)
Query: 1069 FIVVGGGPSGATCVETLRQNGFTGKLYFITDEN-------------F----LPY---DRV 1108
++++GG +G + + +N DEN + LPY +
Sbjct: 39 YVIIGGDAAGMSAAMQIVRN----------DENANVVTLEKGEIYSYAQCGLPYVISGAI 88
Query: 1109 KLSKQLDIKADSILLRT-EEFYKDNDIHVIKGKKIIS-DSELNEKKIK---LQDGTSIDF 1163
+ ++ R + F I ++ D+E +K + + +F
Sbjct: 89 A-------STEKLIARNVKTFRDKYGIDAKVRHEVTKVDTE--KKIVYAEHTKTKDVFEF 139
Query: 1164 T--KIYLATGSSPRT--ISQADGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIG 1217
+ ++ +ATG P D V L+T+ DA I + +V +IG IG
Sbjct: 140 SYDRLLIATGVRPVMPEWEGRDLQG-VHLLKTIPDAERILKTLETNKVEDVTIIGGGAIG 198
Query: 1218 MEAA-AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKN 1276
+E A F K V ++ R ++ E I K + ++ + NV +F+ N
Sbjct: 199 LEMAETFVELG-KKVRMIERNDHIGT-IYDGDMAEYIYKEADKHHIEILTNENVKAFKGN 256
Query: 1277 EKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGV 1336
E+ V A D GT ADLV+V +G NT++L+G + N + A+ VN Y++TNV V
Sbjct: 257 ER--VEAVETDKGT-YKADLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQTNVQDV 313
Query: 1337 YAGGDIA-----------YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 1379
YA GD A + P+ + A GR+A LNM++K+
Sbjct: 314 YAAGDCATHYHVIKEIHDHIPI-------GT-----TANKQGRLAGLNMLDKRR 355
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} Length = 449 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 5e-37
Identities = 68/281 (24%), Positives = 111/281 (39%), Gaps = 41/281 (14%)
Query: 96 DSILLRT-EEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFT--KIYLATGSSP 151
D ++ E F K I + ++I D+ ++G + + A G+SP
Sbjct: 58 DKLMYYPPEVFIKKRGIDLHLNAEVIEVDTG---YVRVRENGGEKSYEWDYLVFANGASP 114
Query: 152 RT--ISQADGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIGMEAA-AFCASKVK 206
+ I + VF DA I ++ NVV+IG +IG+E A AF A
Sbjct: 115 QVPAIEGVNLKG-VFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKN 173
Query: 207 SVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG 266
VT++ RG + S KEV + + + + K V ++ E E+ + + +
Sbjct: 174 -VTMIVRGERVLRRSFDKEVTDILEEKLK-KHVNLRLQEITMKIEGEERVEKV---VTDA 228
Query: 267 TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA------ 320
A+LVI+ G N GV + A+ NE ++T+V VYA GD+A
Sbjct: 229 GEYKAELVILATGIKPNIELAKQLGVRIGETGAIWTNEKMQTSVENVYAAGDVAETRHVI 288
Query: 321 -----YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 356
+ PL A G +A N+ K+
Sbjct: 289 TGRRVWVPL-------AP-----AGNKMGYVAGSNIAGKEL 317
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} Length = 449 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 5e-37
Identities = 68/281 (24%), Positives = 111/281 (39%), Gaps = 41/281 (14%)
Query: 648 DSILLRT-EEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFT--KIYLATGSSP 703
D ++ E F K I + ++I D+ ++G + + A G+SP
Sbjct: 58 DKLMYYPPEVFIKKRGIDLHLNAEVIEVDTG---YVRVRENGGEKSYEWDYLVFANGASP 114
Query: 704 RT--ISQADGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIGMEAA-AFCASKVK 758
+ I + VF DA I ++ NVV+IG +IG+E A AF A
Sbjct: 115 QVPAIEGVNLKG-VFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKN 173
Query: 759 SVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG 818
VT++ RG + S KEV + + + + K V ++ E E+ + + +
Sbjct: 174 -VTMIVRGERVLRRSFDKEVTDILEEKLK-KHVNLRLQEITMKIEGEERVEKV---VTDA 228
Query: 819 TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA------ 872
A+LVI+ G N GV + A+ NE ++T+V VYA GD+A
Sbjct: 229 GEYKAELVILATGIKPNIELAKQLGVRIGETGAIWTNEKMQTSVENVYAAGDVAETRHVI 288
Query: 873 -----YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 908
+ PL A G +A N+ K+
Sbjct: 289 TGRRVWVPL-------AP-----AGNKMGYVAGSNIAGKEL 317
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} Length = 449 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 5e-37
Identities = 68/281 (24%), Positives = 111/281 (39%), Gaps = 41/281 (14%)
Query: 1119 DSILLRT-EEFYKDNDIHVIKGKKIIS-DSELNEKKIKLQDGTSIDFT--KIYLATGSSP 1174
D ++ E F K I + ++I D+ ++G + + A G+SP
Sbjct: 58 DKLMYYPPEVFIKKRGIDLHLNAEVIEVDTG---YVRVRENGGEKSYEWDYLVFANGASP 114
Query: 1175 RT--ISQADGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIGMEAA-AFCASKVK 1229
+ I + VF DA I ++ NVV+IG +IG+E A AF A
Sbjct: 115 QVPAIEGVNLKG-VFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKN 173
Query: 1230 SVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG 1289
VT++ RG + S KEV + + + + K V ++ E E+ + + +
Sbjct: 174 -VTMIVRGERVLRRSFDKEVTDILEEKLK-KHVNLRLQEITMKIEGEERVEKV---VTDA 228
Query: 1290 TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA------ 1343
A+LVI+ G N GV + A+ NE ++T+V VYA GD+A
Sbjct: 229 GEYKAELVILATGIKPNIELAKQLGVRIGETGAIWTNEKMQTSVENVYAAGDVAETRHVI 288
Query: 1344 -----YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 1379
+ PL A G +A N+ K+
Sbjct: 289 TGRRVWVPL-------AP-----AGNKMGYVAGSNIAGKEL 317
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565 | Back alignment and structure |
|---|
Score = 140 bits (356), Expect = 8e-35
Identities = 70/370 (18%), Positives = 126/370 (34%), Gaps = 94/370 (25%)
Query: 47 IVVGGGPSGATCVETLRQNGFTGKLYFITDEN-----------------FLPY---DRVK 86
+++GG GA+ R+ E LPY +
Sbjct: 5 LIIGGVAGGASAAARARRL----------SETAEIIMFERGEYVSFANCGLPYHISGEIA 54
Query: 87 LSKQLDIKADSILLRT-EEFYKDNDIHVIKGKKIIS-DSELNEKKIK---LQDGTSIDFT 141
+ +++L+T E F ++ V ++++ D K + L DG+ +
Sbjct: 55 -------QRSALVLQTPESFKARFNVEVRVKHEVVAIDRA--AKLVTVRRLLDGSEYQES 105
Query: 142 --KIYLATGSSPRT--ISQADGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIGM 195
+ L+ G++P I D LR + D + I I + + V+G FIG+
Sbjct: 106 YDTLLLSPGAAPIVPPIPGVDNPL-THSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGL 164
Query: 196 EAA-AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNE 254
E + +K T++ + +E+ + +GV + +S
Sbjct: 165 EMMESLHHLGIK-TTLLELADQVMT-PVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQV 222
Query: 255 KNDVTAAN-----------------LDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQ 297
+ V + L NG + DL+I+ IG T G+ +
Sbjct: 223 QTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGEL 282
Query: 298 KAVVVNEYLETNVPGVYAGGDIA-----------YAPLHSFYNKNASIGHYQLAQYHGRI 346
+ VN ++T+ P +YA GD PL A A GR+
Sbjct: 283 GGIKVNAMMQTSDPAIYAVGDAVEEQDFVTGQACLVPL-------AG-----PANRQGRM 330
Query: 347 AALNMVEKKT 356
AA NM ++
Sbjct: 331 AADNMFGREE 340
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565 | Back alignment and structure |
|---|
Score = 140 bits (356), Expect = 8e-35
Identities = 70/370 (18%), Positives = 126/370 (34%), Gaps = 94/370 (25%)
Query: 599 IVVGGGPSGATCVETLRQNGFTGKLYFITDEN-----------------FLPY---DRVK 638
+++GG GA+ R+ E LPY +
Sbjct: 5 LIIGGVAGGASAAARARRL----------SETAEIIMFERGEYVSFANCGLPYHISGEIA 54
Query: 639 LSKQLDIKADSILLRT-EEFYKDNDIHVIKGKKIIS-DSELNEKKIK---LQDGTSIDFT 693
+ +++L+T E F ++ V ++++ D K + L DG+ +
Sbjct: 55 -------QRSALVLQTPESFKARFNVEVRVKHEVVAIDRA--AKLVTVRRLLDGSEYQES 105
Query: 694 --KIYLATGSSPRT--ISQADGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIGM 747
+ L+ G++P I D LR + D + I I + + V+G FIG+
Sbjct: 106 YDTLLLSPGAAPIVPPIPGVDNPL-THSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGL 164
Query: 748 EAA-AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNE 806
E + +K T++ + +E+ + +GV + +S
Sbjct: 165 EMMESLHHLGIK-TTLLELADQVMT-PVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQV 222
Query: 807 KNDVTAAN-----------------LDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQ 849
+ V + L NG + DL+I+ IG T G+ +
Sbjct: 223 QTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGEL 282
Query: 850 KAVVVNEYLETNVPGVYAGGDIA-----------YAPLHSFYNKNASIGHYQLAQYHGRI 898
+ VN ++T+ P +YA GD PL A A GR+
Sbjct: 283 GGIKVNAMMQTSDPAIYAVGDAVEEQDFVTGQACLVPL-------AG-----PANRQGRM 330
Query: 899 AALNMVEKKT 908
AA NM ++
Sbjct: 331 AADNMFGREE 340
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565 | Back alignment and structure |
|---|
Score = 140 bits (356), Expect = 8e-35
Identities = 70/370 (18%), Positives = 126/370 (34%), Gaps = 94/370 (25%)
Query: 1070 IVVGGGPSGATCVETLRQNGFTGKLYFITDEN-----------------FLPY---DRVK 1109
+++GG GA+ R+ E LPY +
Sbjct: 5 LIIGGVAGGASAAARARRL----------SETAEIIMFERGEYVSFANCGLPYHISGEIA 54
Query: 1110 LSKQLDIKADSILLRT-EEFYKDNDIHVIKGKKIIS-DSELNEKKIK---LQDGTSIDFT 1164
+ +++L+T E F ++ V ++++ D K + L DG+ +
Sbjct: 55 -------QRSALVLQTPESFKARFNVEVRVKHEVVAIDRA--AKLVTVRRLLDGSEYQES 105
Query: 1165 --KIYLATGSSPRT--ISQADGVNKVFYLRTVEDANNIAPHITPES--NVVVIGSSFIGM 1218
+ L+ G++P I D LR + D + I I + + V+G FIG+
Sbjct: 106 YDTLLLSPGAAPIVPPIPGVDNPL-THSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGL 164
Query: 1219 EAA-AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNE 1277
E + +K T++ + +E+ + +GV + +S
Sbjct: 165 EMMESLHHLGIK-TTLLELADQVMT-PVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQV 222
Query: 1278 KNDVTAAN-----------------LDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQ 1320
+ V + L NG + DL+I+ IG T G+ +
Sbjct: 223 QTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGEL 282
Query: 1321 KAVVVNEYLETNVPGVYAGGDIA-----------YAPLHSFYNKNASIGHYQLAQYHGRI 1369
+ VN ++T+ P +YA GD PL A A GR+
Sbjct: 283 GGIKVNAMMQTSDPAIYAVGDAVEEQDFVTGQACLVPL-------AG-----PANRQGRM 330
Query: 1370 AALNMVEKKT 1379
AA NM ++
Sbjct: 331 AADNMFGREE 340
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* Length = 467 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 3e-29
Identities = 70/272 (25%), Positives = 114/272 (41%), Gaps = 45/272 (16%)
Query: 105 FYKDNDIHVIKGK-KIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQADGVN 161
+ I V+ G+ + D L ++L +G + F + +ATG+SP G+
Sbjct: 104 LGGNPAITVVHGEARFKDDQSL---TVRLNEGGERVVMFDRCLVATGASPAVPP-IPGLK 159
Query: 162 KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCA--SKVKSVTVVGRGAV-P 217
+ Y T +A PE + VIGSS + +E A AF SKV TV+ R +
Sbjct: 160 ESPYW-TSTEALASDT--IPER-LAVIGSSVVALELAQAFARLGSKV---TVLARNTLFF 212
Query: 218 FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVG 277
++ +GE +T F ++G++ + S + V + AD ++V
Sbjct: 213 RED---PAIGEAVTAAFRAEGIEVLEHTQASQVAHMDGEFVLTTT---HGELRADKLLVA 266
Query: 278 IGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIG 335
G NT LD GV +N Q A+V+++ + T+ P +YA GD
Sbjct: 267 TGRTPNTRSLALDAAGVTVNAQGAIVIDQGMRTSNPNIYAAGDC--------------TD 312
Query: 336 HYQL---AQYHGRIAALNMV--EKKTSLSTIP 362
Q A G AA+NM + L+ +P
Sbjct: 313 QPQFVYVAAAAGTRAAINMTGGDAALDLTAMP 344
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* Length = 467 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 3e-29
Identities = 70/272 (25%), Positives = 114/272 (41%), Gaps = 45/272 (16%)
Query: 657 FYKDNDIHVIKGK-KIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQADGVN 713
+ I V+ G+ + D L ++L +G + F + +ATG+SP G+
Sbjct: 104 LGGNPAITVVHGEARFKDDQSL---TVRLNEGGERVVMFDRCLVATGASPAVPP-IPGLK 159
Query: 714 KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCA--SKVKSVTVVGRGAV-P 769
+ Y T +A PE + VIGSS + +E A AF SKV TV+ R +
Sbjct: 160 ESPYW-TSTEALASDT--IPER-LAVIGSSVVALELAQAFARLGSKV---TVLARNTLFF 212
Query: 770 FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVG 829
++ +GE +T F ++G++ + S + V + AD ++V
Sbjct: 213 RED---PAIGEAVTAAFRAEGIEVLEHTQASQVAHMDGEFVLTTT---HGELRADKLLVA 266
Query: 830 IGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIG 887
G NT LD GV +N Q A+V+++ + T+ P +YA GD
Sbjct: 267 TGRTPNTRSLALDAAGVTVNAQGAIVIDQGMRTSNPNIYAAGDC--------------TD 312
Query: 888 HYQL---AQYHGRIAALNMV--EKKTSLSTIP 914
Q A G AA+NM + L+ +P
Sbjct: 313 QPQFVYVAAAAGTRAAINMTGGDAALDLTAMP 344
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* Length = 467 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 3e-29
Identities = 70/272 (25%), Positives = 114/272 (41%), Gaps = 45/272 (16%)
Query: 1128 FYKDNDIHVIKGK-KIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQADGVN 1184
+ I V+ G+ + D L ++L +G + F + +ATG+SP G+
Sbjct: 104 LGGNPAITVVHGEARFKDDQSL---TVRLNEGGERVVMFDRCLVATGASPAVPP-IPGLK 159
Query: 1185 KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCA--SKVKSVTVVGRGAV-P 1240
+ Y T +A PE + VIGSS + +E A AF SKV TV+ R +
Sbjct: 160 ESPYW-TSTEALASDT--IPER-LAVIGSSVVALELAQAFARLGSKV---TVLARNTLFF 212
Query: 1241 FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVG 1300
++ +GE +T F ++G++ + S + V + AD ++V
Sbjct: 213 RED---PAIGEAVTAAFRAEGIEVLEHTQASQVAHMDGEFVLTTT---HGELRADKLLVA 266
Query: 1301 IGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIG 1358
G NT LD GV +N Q A+V+++ + T+ P +YA GD
Sbjct: 267 TGRTPNTRSLALDAAGVTVNAQGAIVIDQGMRTSNPNIYAAGDC--------------TD 312
Query: 1359 HYQL---AQYHGRIAALNMV--EKKTSLSTIP 1385
Q A G AA+NM + L+ +P
Sbjct: 313 QPQFVYVAAAAGTRAAINMTGGDAALDLTAMP 344
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Length = 499 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 1e-27
Identities = 50/234 (21%), Positives = 89/234 (38%), Gaps = 34/234 (14%)
Query: 107 KDNDIHVIKGK-KIISDSEL---NEKKIKLQDG--TSIDFTKIYLATGSSPRTI--SQAD 158
+ VI G+ ++I + + K DG + + + +ATG+SPR + +Q D
Sbjct: 106 LSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSAQPD 165
Query: 159 GVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF 218
G + + P+ ++V+GS G E VTVV
Sbjct: 166 GERILTW----RQL--YDLDALPDH-LIVVGSGVTGAEFVDAYTELGVPVTVV------- 211
Query: 219 QESLG-------KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPA 271
S + + + F +GV+ A +S + V + +G T+
Sbjct: 212 -ASQDHVLPYEDADAALVLEESFAERGVRLFKNARAASVTRT-GAGVLV-TMTDGRTVEG 268
Query: 272 DLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 323
++ IG+V NT+ L+ G++L + V+ T G+YA GD
Sbjct: 269 SHALMTIGSVPNTSGLGLERVGIQLGRGNYLTVDRVSRTLATGIYAAGDCTGLL 322
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Length = 499 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 1e-27
Identities = 50/234 (21%), Positives = 89/234 (38%), Gaps = 34/234 (14%)
Query: 659 KDNDIHVIKGK-KIISDSEL---NEKKIKLQDG--TSIDFTKIYLATGSSPRTI--SQAD 710
+ VI G+ ++I + + K DG + + + +ATG+SPR + +Q D
Sbjct: 106 LSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSAQPD 165
Query: 711 GVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF 770
G + + P+ ++V+GS G E VTVV
Sbjct: 166 GERILTW----RQL--YDLDALPDH-LIVVGSGVTGAEFVDAYTELGVPVTVV------- 211
Query: 771 QESLG-------KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPA 823
S + + + F +GV+ A +S + V + +G T+
Sbjct: 212 -ASQDHVLPYEDADAALVLEESFAERGVRLFKNARAASVTRT-GAGVLV-TMTDGRTVEG 268
Query: 824 DLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 875
++ IG+V NT+ L+ G++L + V+ T G+YA GD
Sbjct: 269 SHALMTIGSVPNTSGLGLERVGIQLGRGNYLTVDRVSRTLATGIYAAGDCTGLL 322
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Length = 499 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 1e-27
Identities = 50/234 (21%), Positives = 89/234 (38%), Gaps = 34/234 (14%)
Query: 1130 KDNDIHVIKGK-KIISDSEL---NEKKIKLQDG--TSIDFTKIYLATGSSPRTI--SQAD 1181
+ VI G+ ++I + + K DG + + + +ATG+SPR + +Q D
Sbjct: 106 LSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSAQPD 165
Query: 1182 GVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF 1241
G + + P+ ++V+GS G E VTVV
Sbjct: 166 GERILTW----RQL--YDLDALPDH-LIVVGSGVTGAEFVDAYTELGVPVTVV------- 211
Query: 1242 QESLG-------KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPA 1294
S + + + F +GV+ A +S + V + +G T+
Sbjct: 212 -ASQDHVLPYEDADAALVLEESFAERGVRLFKNARAASVTRT-GAGVLV-TMTDGRTVEG 268
Query: 1295 DLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 1346
++ IG+V NT+ L+ G++L + V+ T G+YA GD
Sbjct: 269 SHALMTIGSVPNTSGLGLERVGIQLGRGNYLTVDRVSRTLATGIYAAGDCTGLL 322
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* Length = 523 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 4e-25
Identities = 50/223 (22%), Positives = 91/223 (40%), Gaps = 17/223 (7%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYL 166
+ N +++ + D ++ G + LA G+ P T+ GVN
Sbjct: 147 QLNLEYILNCPAKVID----NHTVEA-AGKVFKAKNLILAVGAGPGTLDVP-GVNAKGVF 200
Query: 167 RTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGA--VPFQESLGK 224
+ + P S VVV+G S +E F + + ++ R ++
Sbjct: 201 DHATLVEEL-DYE-PGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKD---N 255
Query: 225 EVGERITKLFESKGVKFVMKANVSSFEKNEKND---VTAANLDNGTTIPADLVIVGIGTV 281
E + + +G++ + +NV+ E++ V A + I D V +G+G
Sbjct: 256 ETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQ 315
Query: 282 LNT-NYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 323
+ G++L + V+VNEYL+T+VP VYA GD+ P
Sbjct: 316 PRSAELAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGP 358
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* Length = 523 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 4e-25
Identities = 50/223 (22%), Positives = 91/223 (40%), Gaps = 17/223 (7%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYL 718
+ N +++ + D ++ G + LA G+ P T+ GVN
Sbjct: 147 QLNLEYILNCPAKVID----NHTVEA-AGKVFKAKNLILAVGAGPGTLDVP-GVNAKGVF 200
Query: 719 RTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGA--VPFQESLGK 776
+ + P S VVV+G S +E F + + ++ R ++
Sbjct: 201 DHATLVEEL-DYE-PGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKD---N 255
Query: 777 EVGERITKLFESKGVKFVMKANVSSFEKNEKND---VTAANLDNGTTIPADLVIVGIGTV 833
E + + +G++ + +NV+ E++ V A + I D V +G+G
Sbjct: 256 ETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQ 315
Query: 834 LNT-NYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 875
+ G++L + V+VNEYL+T+VP VYA GD+ P
Sbjct: 316 PRSAELAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGP 358
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* Length = 523 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 4e-25
Identities = 50/223 (22%), Positives = 91/223 (40%), Gaps = 17/223 (7%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYL 1189
+ N +++ + D ++ G + LA G+ P T+ GVN
Sbjct: 147 QLNLEYILNCPAKVID----NHTVEA-AGKVFKAKNLILAVGAGPGTLDVP-GVNAKGVF 200
Query: 1190 RTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGA--VPFQESLGK 1247
+ + P S VVV+G S +E F + + ++ R ++
Sbjct: 201 DHATLVEEL-DYE-PGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKD---N 255
Query: 1248 EVGERITKLFESKGVKFVMKANVSSFEKNEKND---VTAANLDNGTTIPADLVIVGIGTV 1304
E + + +G++ + +NV+ E++ V A + I D V +G+G
Sbjct: 256 ETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQ 315
Query: 1305 LNT-NYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 1346
+ G++L + V+VNEYL+T+VP VYA GD+ P
Sbjct: 316 PRSAELAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGP 358
|
| >3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} Length = 106 | Back alignment and structure |
|---|
Score = 99.6 bits (249), Expect = 5e-25
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 507 IYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQND 566
+AV C+H L G L V C H F + TG ++ P + + + ++ D
Sbjct: 35 FFAVQDTCTHGDWALSDGYLDGDIVECTLHFGKFCVRTGKVKALPACKPIKVFPIKVEGD 94
Query: 567 DSVVVQARKDELK 579
+ V V ELK
Sbjct: 95 E-VHVDLDNGELK 106
|
| >3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} Length = 106 | Back alignment and structure |
|---|
Score = 99.6 bits (249), Expect = 5e-25
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 978 IYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQND 1037
+AV C+H L G L V C H F + TG ++ P + + + ++ D
Sbjct: 35 FFAVQDTCTHGDWALSDGYLDGDIVECTLHFGKFCVRTGKVKALPACKPIKVFPIKVEGD 94
Query: 1038 DSVVVQARKDELK 1050
+ V V ELK
Sbjct: 95 E-VHVDLDNGELK 106
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* Length = 464 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 6e-25
Identities = 66/229 (28%), Positives = 94/229 (41%), Gaps = 28/229 (12%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQADGVNKVF 164
K N I I G +D+ N + L DG S+ F +ATGSS R + V
Sbjct: 102 KKNKITEIHGYGTFADA--NTLLVDLNDGGTESVTFDNAIIATGSSTRLVPGTSLSANVV 159
Query: 165 YLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLG- 223
T E+ I P+S +++ G+ IGME + VT+V E L
Sbjct: 160 ---TYEEQ--ILSRELPKS-IIIAGAGAIGMEFGYVLKNYGVDVTIV--------EFLPR 205
Query: 224 ------KEVGERITKLFESKGVKFVMKANVSSFEKNEKN-DVTAANLDNGTTIPADLVIV 276
+V + I K F+ GV + V S VT + A+ V+
Sbjct: 206 ALPNEDADVSKEIEKQFKKLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQ 265
Query: 277 GIGTVLNT-NY-LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 323
IG N Y LD GV L +KA+ V++Y+ TNV +YA GD+
Sbjct: 266 AIGFAPNVEGYGLDKAGVALTDRKAIGVDDYMRTNVGHIYAIGDVNGLL 314
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* Length = 464 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 6e-25
Identities = 66/229 (28%), Positives = 94/229 (41%), Gaps = 28/229 (12%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQADGVNKVF 716
K N I I G +D+ N + L DG S+ F +ATGSS R + V
Sbjct: 102 KKNKITEIHGYGTFADA--NTLLVDLNDGGTESVTFDNAIIATGSSTRLVPGTSLSANVV 159
Query: 717 YLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLG- 775
T E+ I P+S +++ G+ IGME + VT+V E L
Sbjct: 160 ---TYEEQ--ILSRELPKS-IIIAGAGAIGMEFGYVLKNYGVDVTIV--------EFLPR 205
Query: 776 ------KEVGERITKLFESKGVKFVMKANVSSFEKNEKN-DVTAANLDNGTTIPADLVIV 828
+V + I K F+ GV + V S VT + A+ V+
Sbjct: 206 ALPNEDADVSKEIEKQFKKLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQ 265
Query: 829 GIGTVLNT-NY-LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 875
IG N Y LD GV L +KA+ V++Y+ TNV +YA GD+
Sbjct: 266 AIGFAPNVEGYGLDKAGVALTDRKAIGVDDYMRTNVGHIYAIGDVNGLL 314
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* Length = 464 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 6e-25
Identities = 66/229 (28%), Positives = 94/229 (41%), Gaps = 28/229 (12%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQADGVNKVF 1187
K N I I G +D+ N + L DG S+ F +ATGSS R + V
Sbjct: 102 KKNKITEIHGYGTFADA--NTLLVDLNDGGTESVTFDNAIIATGSSTRLVPGTSLSANVV 159
Query: 1188 YLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLG- 1246
T E+ I P+S +++ G+ IGME + VT+V E L
Sbjct: 160 ---TYEEQ--ILSRELPKS-IIIAGAGAIGMEFGYVLKNYGVDVTIV--------EFLPR 205
Query: 1247 ------KEVGERITKLFESKGVKFVMKANVSSFEKNEKN-DVTAANLDNGTTIPADLVIV 1299
+V + I K F+ GV + V S VT + A+ V+
Sbjct: 206 ALPNEDADVSKEIEKQFKKLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQ 265
Query: 1300 GIGTVLNT-NY-LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 1346
IG N Y LD GV L +KA+ V++Y+ TNV +YA GD+
Sbjct: 266 AIGFAPNVEGYGLDKAGVALTDRKAIGVDDYMRTNVGHIYAIGDVNGLL 314
|
| >2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D* Length = 115 | Back alignment and structure |
|---|
Score = 98.9 bits (247), Expect = 2e-24
Identities = 24/83 (28%), Positives = 37/83 (44%)
Query: 956 DKVLAILTVGMDPLAAQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIAT 1015
+ + VG PLA YA C+H A L +G+L + CP+HG FN+ T
Sbjct: 17 GTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCT 76
Query: 1016 GDIEDFPGMDSLPCYKVTIQNDD 1038
G P L ++V ++ +
Sbjct: 77 GMPASSPCTVPLGVFEVEVKEGE 99
|
| >2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D* Length = 115 | Back alignment and structure |
|---|
Score = 97.0 bits (242), Expect = 7e-24
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 507 IYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQND 566
YA C+H A L +G+L + CP+HG FN+ TG P L ++V ++
Sbjct: 39 FYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEG 98
Query: 567 D 567
+
Sbjct: 99 E 99
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} Length = 484 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 9e-24
Identities = 61/225 (27%), Positives = 107/225 (47%), Gaps = 34/225 (15%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQ-DGTSIDFTKIYLATGSSPRTISQADGV----- 160
+++++H+ + + + D E ++L G I KI +ATG+ + S G
Sbjct: 125 QNSNVHIYESRAVFVD----EHTLELSVTGERISAEKILIATGAKIVSNSAIKGSDLCLT 180
Query: 161 -NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP-- 217
N++F L + P+S +V++G +IG+E A T++ RG +
Sbjct: 181 SNEIFDLEKL-----------PKS-IVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILR 228
Query: 218 -FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIV 276
F ++ + + +KG+ + +A VS + E + L NG TI AD V++
Sbjct: 229 NFDY----DLRQLLNDAMVAKGISIIYEATVSQVQSTE--NCYNVVLTNGQTICADRVML 282
Query: 277 GIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 319
G V NT L+ GV++N AVVV+E + TNV ++A GD+
Sbjct: 283 ATGRVPNTTGLGLERAGVKVNEFGAVVVDEKMTTNVSHIWAVGDV 327
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} Length = 484 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 9e-24
Identities = 61/225 (27%), Positives = 107/225 (47%), Gaps = 34/225 (15%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQ-DGTSIDFTKIYLATGSSPRTISQADGV----- 712
+++++H+ + + + D E ++L G I KI +ATG+ + S G
Sbjct: 125 QNSNVHIYESRAVFVD----EHTLELSVTGERISAEKILIATGAKIVSNSAIKGSDLCLT 180
Query: 713 -NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP-- 769
N++F L + P+S +V++G +IG+E A T++ RG +
Sbjct: 181 SNEIFDLEKL-----------PKS-IVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILR 228
Query: 770 -FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIV 828
F ++ + + +KG+ + +A VS + E + L NG TI AD V++
Sbjct: 229 NFDY----DLRQLLNDAMVAKGISIIYEATVSQVQSTE--NCYNVVLTNGQTICADRVML 282
Query: 829 GIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 871
G V NT L+ GV++N AVVV+E + TNV ++A GD+
Sbjct: 283 ATGRVPNTTGLGLERAGVKVNEFGAVVVDEKMTTNVSHIWAVGDV 327
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} Length = 484 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 9e-24
Identities = 61/225 (27%), Positives = 107/225 (47%), Gaps = 34/225 (15%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQ-DGTSIDFTKIYLATGSSPRTISQADGV----- 1183
+++++H+ + + + D E ++L G I KI +ATG+ + S G
Sbjct: 125 QNSNVHIYESRAVFVD----EHTLELSVTGERISAEKILIATGAKIVSNSAIKGSDLCLT 180
Query: 1184 -NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP-- 1240
N++F L + P+S +V++G +IG+E A T++ RG +
Sbjct: 181 SNEIFDLEKL-----------PKS-IVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILR 228
Query: 1241 -FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIV 1299
F ++ + + +KG+ + +A VS + E + L NG TI AD V++
Sbjct: 229 NFDY----DLRQLLNDAMVAKGISIIYEATVSQVQSTE--NCYNVVLTNGQTICADRVML 282
Query: 1300 GIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 1342
G V NT L+ GV++N AVVV+E + TNV ++A GD+
Sbjct: 283 ATGRVPNTTGLGLERAGVKVNEFGAVVVDEKMTTNVSHIWAVGDV 327
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} Length = 479 | Back alignment and structure |
|---|
Score = 104 bits (263), Expect = 2e-23
Identities = 49/226 (21%), Positives = 91/226 (40%), Gaps = 31/226 (13%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFT--KIYLATGSSPRTISQADGV---- 160
+ + V+ G + +++ +D T+ ++ I +ATG G
Sbjct: 116 EKEKVDVVFGWARFNKD--GNVEVQKRDNTTEVYSANHILVATGGKAIFPENIPGFELGT 173
Query: 161 --NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP- 217
+ F L P+ VVV+G+ +IG+E A +V RG
Sbjct: 174 DSDGFFRLEEQ-----------PKK-VVVVGAGYIGIELAGVFHGLGSETHLVIRGETVL 221
Query: 218 --FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTI-PADLV 274
F E + IT + +G+ + + EKN + D ++++ +I D +
Sbjct: 222 RKFDE----CIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDEL 277
Query: 275 IVGIGTVLNTNY-LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 319
I IG + + G++LN ++ +EY TNVP +Y+ GD+
Sbjct: 278 IWTIGRKSHLGMGSENVGIKLNSHDQIIADEYQNTNVPNIYSLGDV 323
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} Length = 479 | Back alignment and structure |
|---|
Score = 104 bits (263), Expect = 2e-23
Identities = 49/226 (21%), Positives = 91/226 (40%), Gaps = 31/226 (13%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFT--KIYLATGSSPRTISQADGV---- 712
+ + V+ G + +++ +D T+ ++ I +ATG G
Sbjct: 116 EKEKVDVVFGWARFNKD--GNVEVQKRDNTTEVYSANHILVATGGKAIFPENIPGFELGT 173
Query: 713 --NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP- 769
+ F L P+ VVV+G+ +IG+E A +V RG
Sbjct: 174 DSDGFFRLEEQ-----------PKK-VVVVGAGYIGIELAGVFHGLGSETHLVIRGETVL 221
Query: 770 --FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTI-PADLV 826
F E + IT + +G+ + + EKN + D ++++ +I D +
Sbjct: 222 RKFDE----CIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDEL 277
Query: 827 IVGIGTVLNTNY-LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 871
I IG + + G++LN ++ +EY TNVP +Y+ GD+
Sbjct: 278 IWTIGRKSHLGMGSENVGIKLNSHDQIIADEYQNTNVPNIYSLGDV 323
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} Length = 479 | Back alignment and structure |
|---|
Score = 104 bits (263), Expect = 2e-23
Identities = 49/226 (21%), Positives = 91/226 (40%), Gaps = 31/226 (13%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFT--KIYLATGSSPRTISQADGV---- 1183
+ + V+ G + +++ +D T+ ++ I +ATG G
Sbjct: 116 EKEKVDVVFGWARFNKD--GNVEVQKRDNTTEVYSANHILVATGGKAIFPENIPGFELGT 173
Query: 1184 --NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP- 1240
+ F L P+ VVV+G+ +IG+E A +V RG
Sbjct: 174 DSDGFFRLEEQ-----------PKK-VVVVGAGYIGIELAGVFHGLGSETHLVIRGETVL 221
Query: 1241 --FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTI-PADLV 1297
F E + IT + +G+ + + EKN + D ++++ +I D +
Sbjct: 222 RKFDE----CIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDEL 277
Query: 1298 IVGIGTVLNTNY-LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 1342
I IG + + G++LN ++ +EY TNVP +Y+ GD+
Sbjct: 278 IWTIGRKSHLGMGSENVGIKLNSHDQIIADEYQNTNVPNIYSLGDV 323
|
| >3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans} Length = 121 | Back alignment and structure |
|---|
Score = 94.7 bits (236), Expect = 5e-23
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 506 NIYAVGTKCSHYGAPLVKGSL--GDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTI 563
++YA+ CSH A L G + CP H F++ TG P + + Y V +
Sbjct: 43 SVYAISNLCSHAEAYLDMGVFHAESLEIECPLHVGRFDVRTGAPTALPCVLPVRAYDVVV 102
Query: 564 QNDDSVVVQARKDE 577
+ ++V ++ +
Sbjct: 103 DGTE-ILVAPKEAD 115
|
| >3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans} Length = 121 | Back alignment and structure |
|---|
Score = 94.7 bits (236), Expect = 5e-23
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 977 NIYAVGTKCSHYGAPLVKGSL--GDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTI 1034
++YA+ CSH A L G + CP H F++ TG P + + Y V +
Sbjct: 43 SVYAISNLCSHAEAYLDMGVFHAESLEIECPLHVGRFDVRTGAPTALPCVLPVRAYDVVV 102
Query: 1035 QNDDSVVVQARKDE 1048
+ ++V ++ +
Sbjct: 103 DGTE-ILVAPKEAD 115
|
| >2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae} Length = 108 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 6e-23
Identities = 24/83 (28%), Positives = 38/83 (45%)
Query: 956 DKVLAILTVGMDPLAAQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIAT 1015
+ +A+ M LA + ++ C+H A L G + CP+HG F+IAT
Sbjct: 16 GEPVAVYQEKMPALAVYNVDGEVFVTDNLCTHGNAMLTDGYQDGTIIECPFHGGSFDIAT 75
Query: 1016 GDIEDFPGMDSLPCYKVTIQNDD 1038
G + FP + Y VTI++
Sbjct: 76 GAAKAFPCQIPIKTYPVTIEDGW 98
|
| >2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae} Length = 108 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 3e-22
Identities = 20/61 (32%), Positives = 30/61 (49%)
Query: 507 IYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQND 566
++ C+H A L G + CP+HG F+IATG + FP + Y VTI++
Sbjct: 38 VFVTDNLCTHGNAMLTDGYQDGTIIECPFHGGSFDIATGAAKAFPCQIPIKTYPVTIEDG 97
Query: 567 D 567
Sbjct: 98 W 98
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} Length = 463 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 2e-22
Identities = 51/226 (22%), Positives = 93/226 (41%), Gaps = 35/226 (15%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQ-DGTSIDFTKIYLATGSSPRTISQADGV----- 160
+ ++ + ++ +KL G ++ +I +A G P G
Sbjct: 104 ANAGAEILDTRAELAG----PNTVKLLASGKTVTAERIVIAVGGHPSPHDALPGHELCIT 159
Query: 161 -NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCASKVKSVTVVGRGAVP- 217
N+ F L + PES +++ G +I +E A F VK T++ RG
Sbjct: 160 SNEAFDLPAL-----------PES-ILIAGGGYIAVEFANIFHGLGVK-TTLIYRGKEIL 206
Query: 218 --FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVI 275
F + ++ + E KG++ + + + S + A I AD V+
Sbjct: 207 SRFDQ----DMRRGLHAAMEEKGIRILCEDIIQSVSADADGRRVAT-TMKHGEIVADQVM 261
Query: 276 VGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 319
+ +G + NTN L+ GV N A++V+ + T+ PG+YA GD+
Sbjct: 262 LALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSRTSTPGIYALGDV 307
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} Length = 463 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 2e-22
Identities = 51/226 (22%), Positives = 93/226 (41%), Gaps = 35/226 (15%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQ-DGTSIDFTKIYLATGSSPRTISQADGV----- 712
+ ++ + ++ +KL G ++ +I +A G P G
Sbjct: 104 ANAGAEILDTRAELAG----PNTVKLLASGKTVTAERIVIAVGGHPSPHDALPGHELCIT 159
Query: 713 -NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCASKVKSVTVVGRGAVP- 769
N+ F L + PES +++ G +I +E A F VK T++ RG
Sbjct: 160 SNEAFDLPAL-----------PES-ILIAGGGYIAVEFANIFHGLGVK-TTLIYRGKEIL 206
Query: 770 --FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVI 827
F + ++ + E KG++ + + + S + A I AD V+
Sbjct: 207 SRFDQ----DMRRGLHAAMEEKGIRILCEDIIQSVSADADGRRVAT-TMKHGEIVADQVM 261
Query: 828 VGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 871
+ +G + NTN L+ GV N A++V+ + T+ PG+YA GD+
Sbjct: 262 LALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSRTSTPGIYALGDV 307
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} Length = 463 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 2e-22
Identities = 51/226 (22%), Positives = 93/226 (41%), Gaps = 35/226 (15%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQ-DGTSIDFTKIYLATGSSPRTISQADGV----- 1183
+ ++ + ++ +KL G ++ +I +A G P G
Sbjct: 104 ANAGAEILDTRAELAG----PNTVKLLASGKTVTAERIVIAVGGHPSPHDALPGHELCIT 159
Query: 1184 -NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCASKVKSVTVVGRGAVP- 1240
N+ F L + PES +++ G +I +E A F VK T++ RG
Sbjct: 160 SNEAFDLPAL-----------PES-ILIAGGGYIAVEFANIFHGLGVK-TTLIYRGKEIL 206
Query: 1241 --FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVI 1298
F + ++ + E KG++ + + + S + A I AD V+
Sbjct: 207 SRFDQ----DMRRGLHAAMEEKGIRILCEDIIQSVSADADGRRVAT-TMKHGEIVADQVM 261
Query: 1299 VGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 1342
+ +G + NTN L+ GV N A++V+ + T+ PG+YA GD+
Sbjct: 262 LALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSRTSTPGIYALGDV 307
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Length = 450 | Back alignment and structure |
|---|
Score = 98.7 bits (247), Expect = 1e-21
Identities = 53/223 (23%), Positives = 91/223 (40%), Gaps = 32/223 (14%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRT--ISQADGV---N 161
N++ VIKG D K +++ +G +I I +ATG P I + +
Sbjct: 104 GKNNVDVIKGFARFVD----AKTLEV-NGETITADHILIATGGRPSHPDIPGVEYGIDSD 158
Query: 162 KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP---F 218
F L + PE V V+G+ +IG+E + P F
Sbjct: 159 GFFALPAL-----------PER-VAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSF 206
Query: 219 QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 278
+ E + ++ ++G + A + KN +T L++G + D +I I
Sbjct: 207 DP----MISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTL-ELEDGRSETVDCLIWAI 261
Query: 279 GTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 319
G + L+ GV+ N + +VV++Y TN+ G+YA GD
Sbjct: 262 GREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDN 304
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Length = 450 | Back alignment and structure |
|---|
Score = 98.7 bits (247), Expect = 1e-21
Identities = 53/223 (23%), Positives = 91/223 (40%), Gaps = 32/223 (14%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRT--ISQADGV---N 713
N++ VIKG D K +++ +G +I I +ATG P I + +
Sbjct: 104 GKNNVDVIKGFARFVD----AKTLEV-NGETITADHILIATGGRPSHPDIPGVEYGIDSD 158
Query: 714 KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP---F 770
F L + PE V V+G+ +IG+E + P F
Sbjct: 159 GFFALPAL-----------PER-VAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSF 206
Query: 771 QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 830
+ E + ++ ++G + A + KN +T L++G + D +I I
Sbjct: 207 DP----MISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTL-ELEDGRSETVDCLIWAI 261
Query: 831 GTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 871
G + L+ GV+ N + +VV++Y TN+ G+YA GD
Sbjct: 262 GREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDN 304
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Length = 450 | Back alignment and structure |
|---|
Score = 98.7 bits (247), Expect = 1e-21
Identities = 53/223 (23%), Positives = 91/223 (40%), Gaps = 32/223 (14%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRT--ISQADGV---N 1184
N++ VIKG D K +++ +G +I I +ATG P I + +
Sbjct: 104 GKNNVDVIKGFARFVD----AKTLEV-NGETITADHILIATGGRPSHPDIPGVEYGIDSD 158
Query: 1185 KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP---F 1241
F L + PE V V+G+ +IG+E + P F
Sbjct: 159 GFFALPAL-----------PER-VAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSF 206
Query: 1242 QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 1301
+ E + ++ ++G + A + KN +T L++G + D +I I
Sbjct: 207 DP----MISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTL-ELEDGRSETVDCLIWAI 261
Query: 1302 GTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 1342
G + L+ GV+ N + +VV++Y TN+ G+YA GD
Sbjct: 262 GREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDN 304
|
| >2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida} Length = 103 | Back alignment and structure |
|---|
Score = 89.2 bits (222), Expect = 3e-21
Identities = 19/61 (31%), Positives = 27/61 (44%)
Query: 507 IYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQND 566
IYA C+H A + G L + CP H F++ TG P ++ Y V I+N
Sbjct: 37 IYATDNLCTHGSARMSDGYLEGREIECPLHQGRFDVCTGKALCAPVTQNIKTYPVKIENL 96
Query: 567 D 567
Sbjct: 97 R 97
|
| >2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida} Length = 103 | Back alignment and structure |
|---|
Score = 89.2 bits (222), Expect = 3e-21
Identities = 19/61 (31%), Positives = 27/61 (44%)
Query: 978 IYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQND 1037
IYA C+H A + G L + CP H F++ TG P ++ Y V I+N
Sbjct: 37 IYATDNLCTHGSARMSDGYLEGREIECPLHQGRFDVCTGKALCAPVTQNIKTYPVKIENL 96
Query: 1038 D 1038
Sbjct: 97 R 97
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* Length = 495 | Back alignment and structure |
|---|
Score = 97.6 bits (244), Expect = 4e-21
Identities = 60/233 (25%), Positives = 92/233 (39%), Gaps = 36/233 (15%)
Query: 105 FYKDNDIHVIKGKKIISDS---ELNEK-KIKLQDGTSIDFTKIYLATGSSPRT--ISQAD 158
F + G + + E K + I LATGS P+ I +
Sbjct: 117 FNDTEGLDFFLGWGSLESKNVVVVRETADPKSAVKERLQADHILLATGSWPQMPAIPGIE 176
Query: 159 GV---NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA----AFCASKVKSVTVV 211
N+ FYL P V+ +G FI +E A A+ K VT+
Sbjct: 177 HCISSNEAFYLPEP-----------PRR-VLTVGGGFISVEFAGIFNAYKPPGGK-VTLC 223
Query: 212 GRGAVP---FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTT 268
R + F E + E +TK + G++ + N + N ++G T
Sbjct: 224 YRNNLILRGFDE----TIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHV-TFESGKT 278
Query: 269 IPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 319
+ D+V++ IG + TN L GV+L + V V+E+ TNVP +YA GDI
Sbjct: 279 LDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTNVPNIYAIGDI 331
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* Length = 495 | Back alignment and structure |
|---|
Score = 97.6 bits (244), Expect = 4e-21
Identities = 60/233 (25%), Positives = 92/233 (39%), Gaps = 36/233 (15%)
Query: 657 FYKDNDIHVIKGKKIISDS---ELNEK-KIKLQDGTSIDFTKIYLATGSSPRT--ISQAD 710
F + G + + E K + I LATGS P+ I +
Sbjct: 117 FNDTEGLDFFLGWGSLESKNVVVVRETADPKSAVKERLQADHILLATGSWPQMPAIPGIE 176
Query: 711 GV---NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA----AFCASKVKSVTVV 763
N+ FYL P V+ +G FI +E A A+ K VT+
Sbjct: 177 HCISSNEAFYLPEP-----------PRR-VLTVGGGFISVEFAGIFNAYKPPGGK-VTLC 223
Query: 764 GRGAVP---FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTT 820
R + F E + E +TK + G++ + N + N ++G T
Sbjct: 224 YRNNLILRGFDE----TIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHV-TFESGKT 278
Query: 821 IPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 871
+ D+V++ IG + TN L GV+L + V V+E+ TNVP +YA GDI
Sbjct: 279 LDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTNVPNIYAIGDI 331
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* Length = 495 | Back alignment and structure |
|---|
Score = 97.6 bits (244), Expect = 4e-21
Identities = 60/233 (25%), Positives = 92/233 (39%), Gaps = 36/233 (15%)
Query: 1128 FYKDNDIHVIKGKKIISDS---ELNEK-KIKLQDGTSIDFTKIYLATGSSPRT--ISQAD 1181
F + G + + E K + I LATGS P+ I +
Sbjct: 117 FNDTEGLDFFLGWGSLESKNVVVVRETADPKSAVKERLQADHILLATGSWPQMPAIPGIE 176
Query: 1182 GV---NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA----AFCASKVKSVTVV 1234
N+ FYL P V+ +G FI +E A A+ K VT+
Sbjct: 177 HCISSNEAFYLPEP-----------PRR-VLTVGGGFISVEFAGIFNAYKPPGGK-VTLC 223
Query: 1235 GRGAVP---FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTT 1291
R + F E + E +TK + G++ + N + N ++G T
Sbjct: 224 YRNNLILRGFDE----TIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHV-TFESGKT 278
Query: 1292 IPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 1342
+ D+V++ IG + TN L GV+L + V V+E+ TNVP +YA GDI
Sbjct: 279 LDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTNVPNIYAIGDI 331
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* Length = 490 | Back alignment and structure |
|---|
Score = 97.2 bits (243), Expect = 6e-21
Identities = 53/235 (22%), Positives = 91/235 (38%), Gaps = 40/235 (17%)
Query: 105 FYKDNDIHVIKGKKIISDS---ELNEKKIKLQDGTSIDFT--KIYLATGSSPRTISQADG 159
F + +G + D+ + E I LATGS P+ +G
Sbjct: 113 FADTEGLTFHQGFGALQDNHTVLVRESADP-NSAVLETLDTEYILLATGSWPQ-HLGIEG 170
Query: 160 V------NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA----AFCASKVKSVT 209
N+ FYL P+ + +G +I +E A A+ A + V
Sbjct: 171 DDLCITSNEAFYLDEA-----------PKR-ALCVGGGYISIEFAGIFNAYKARGGQ-VD 217
Query: 210 VVGRGAVP---FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG 266
+ RG + F E+ +++T+ + G+ N + KN ++G
Sbjct: 218 LAYRGDMILRGFDS----ELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHV-VFESG 272
Query: 267 TTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 319
D+V++ IG V + L+ GVE+ A+ V+ Y +TNV +YA GD+
Sbjct: 273 AEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDV 327
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* Length = 490 | Back alignment and structure |
|---|
Score = 97.2 bits (243), Expect = 6e-21
Identities = 53/235 (22%), Positives = 91/235 (38%), Gaps = 40/235 (17%)
Query: 657 FYKDNDIHVIKGKKIISDS---ELNEKKIKLQDGTSIDFT--KIYLATGSSPRTISQADG 711
F + +G + D+ + E I LATGS P+ +G
Sbjct: 113 FADTEGLTFHQGFGALQDNHTVLVRESADP-NSAVLETLDTEYILLATGSWPQ-HLGIEG 170
Query: 712 V------NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA----AFCASKVKSVT 761
N+ FYL P+ + +G +I +E A A+ A + V
Sbjct: 171 DDLCITSNEAFYLDEA-----------PKR-ALCVGGGYISIEFAGIFNAYKARGGQ-VD 217
Query: 762 VVGRGAVP---FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG 818
+ RG + F E+ +++T+ + G+ N + KN ++G
Sbjct: 218 LAYRGDMILRGFDS----ELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHV-VFESG 272
Query: 819 TTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 871
D+V++ IG V + L+ GVE+ A+ V+ Y +TNV +YA GD+
Sbjct: 273 AEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDV 327
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* Length = 490 | Back alignment and structure |
|---|
Score = 97.2 bits (243), Expect = 6e-21
Identities = 53/235 (22%), Positives = 91/235 (38%), Gaps = 40/235 (17%)
Query: 1128 FYKDNDIHVIKGKKIISDS---ELNEKKIKLQDGTSIDFT--KIYLATGSSPRTISQADG 1182
F + +G + D+ + E I LATGS P+ +G
Sbjct: 113 FADTEGLTFHQGFGALQDNHTVLVRESADP-NSAVLETLDTEYILLATGSWPQ-HLGIEG 170
Query: 1183 V------NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA----AFCASKVKSVT 1232
N+ FYL P+ + +G +I +E A A+ A + V
Sbjct: 171 DDLCITSNEAFYLDEA-----------PKR-ALCVGGGYISIEFAGIFNAYKARGGQ-VD 217
Query: 1233 VVGRGAVP---FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG 1289
+ RG + F E+ +++T+ + G+ N + KN ++G
Sbjct: 218 LAYRGDMILRGFDS----ELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHV-VFESG 272
Query: 1290 TTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 1342
D+V++ IG V + L+ GVE+ A+ V+ Y +TNV +YA GD+
Sbjct: 273 AEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDV 327
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* Length = 463 | Back alignment and structure |
|---|
Score = 96.8 bits (242), Expect = 7e-21
Identities = 65/273 (23%), Positives = 100/273 (36%), Gaps = 53/273 (19%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRT--ISQADGV---N 161
+ I + G D I++ +G + I +ATG P + A+ +
Sbjct: 103 ERLGITRVDGHARFVD----AHTIEV-EGQRLSADHIVIATGGRPIVPRLPGAELGITSD 157
Query: 162 KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP---F 218
F L+ P+ V +IG+ +IG+E A S VTVV F
Sbjct: 158 GFFALQQQ-----------PKR-VAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQF 205
Query: 219 QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 278
+ + + ++G++ ++ V++ E++ T D D VI +
Sbjct: 206 DP----LLSATLAENMHAQGIETHLEFAVAALERDA-QGTTLVAQDGTRLEGFDSVIWAV 260
Query: 279 GTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGH 336
G NT L+ G+E+ V + Y TNVPGVYA GDI G
Sbjct: 261 GRAPNTRDLGLEAAGIEVQSNGMVPTDAYQNTNVPGVYALGDI--------------TGR 306
Query: 337 YQL---AQYHGRIAA----LNMVEKKTSLSTIP 362
QL A GR A E+K IP
Sbjct: 307 DQLTPVAIAAGRRLAERLFDGQSERKLDYDNIP 339
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* Length = 463 | Back alignment and structure |
|---|
Score = 96.8 bits (242), Expect = 7e-21
Identities = 65/273 (23%), Positives = 100/273 (36%), Gaps = 53/273 (19%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRT--ISQADGV---N 713
+ I + G D I++ +G + I +ATG P + A+ +
Sbjct: 103 ERLGITRVDGHARFVD----AHTIEV-EGQRLSADHIVIATGGRPIVPRLPGAELGITSD 157
Query: 714 KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP---F 770
F L+ P+ V +IG+ +IG+E A S VTVV F
Sbjct: 158 GFFALQQQ-----------PKR-VAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQF 205
Query: 771 QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 830
+ + + ++G++ ++ V++ E++ T D D VI +
Sbjct: 206 DP----LLSATLAENMHAQGIETHLEFAVAALERDA-QGTTLVAQDGTRLEGFDSVIWAV 260
Query: 831 GTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGH 888
G NT L+ G+E+ V + Y TNVPGVYA GDI G
Sbjct: 261 GRAPNTRDLGLEAAGIEVQSNGMVPTDAYQNTNVPGVYALGDI--------------TGR 306
Query: 889 YQL---AQYHGRIAA----LNMVEKKTSLSTIP 914
QL A GR A E+K IP
Sbjct: 307 DQLTPVAIAAGRRLAERLFDGQSERKLDYDNIP 339
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* Length = 463 | Back alignment and structure |
|---|
Score = 96.8 bits (242), Expect = 7e-21
Identities = 65/273 (23%), Positives = 100/273 (36%), Gaps = 53/273 (19%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRT--ISQADGV---N 1184
+ I + G D I++ +G + I +ATG P + A+ +
Sbjct: 103 ERLGITRVDGHARFVD----AHTIEV-EGQRLSADHIVIATGGRPIVPRLPGAELGITSD 157
Query: 1185 KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP---F 1241
F L+ P+ V +IG+ +IG+E A S VTVV F
Sbjct: 158 GFFALQQQ-----------PKR-VAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQF 205
Query: 1242 QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 1301
+ + + ++G++ ++ V++ E++ T D D VI +
Sbjct: 206 DP----LLSATLAENMHAQGIETHLEFAVAALERDA-QGTTLVAQDGTRLEGFDSVIWAV 260
Query: 1302 GTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGH 1359
G NT L+ G+E+ V + Y TNVPGVYA GDI G
Sbjct: 261 GRAPNTRDLGLEAAGIEVQSNGMVPTDAYQNTNVPGVYALGDI--------------TGR 306
Query: 1360 YQL---AQYHGRIAA----LNMVEKKTSLSTIP 1385
QL A GR A E+K IP
Sbjct: 307 DQLTPVAIAAGRRLAERLFDGQSERKLDYDNIP 339
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} Length = 492 | Back alignment and structure |
|---|
Score = 96.5 bits (241), Expect = 1e-20
Identities = 56/264 (21%), Positives = 92/264 (34%), Gaps = 49/264 (18%)
Query: 109 NDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNK------ 162
++ I+G D E +++ D + + +I +ATGS P
Sbjct: 110 DEQDKIRGFAKFLD----EHTLQVDDHSQVIAKRIVIATGSRPNYPEFLAAAGSRLLTND 165
Query: 163 -VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRG--AVPFQ 219
+F L + P+S V V G IG+E + V V GR Q
Sbjct: 166 NLFELNDL-----------PKS-VAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANLQ 213
Query: 220 ESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG--TTIPADLVIVG 277
+ +E+ K F + F KA V S + E +G TT V+
Sbjct: 214 D---EEMKRYAEKTFN-EEFYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAA 269
Query: 278 IGTVLNTNYL--DGKGVELNGQKAVVVNEY-LETNVPGVYAGGDIAYAP--LHSFYNKNA 332
G N + L + +EL+ + + + +E L+T+V ++ GD LH
Sbjct: 270 TGRKANVDKLGLENTSIELDKKNSPLFDELTLQTSVDHIFVAGDANNTLTLLHE------ 323
Query: 333 SIGHYQLAQYHGRIAALNMVEKKT 356
A G++A N
Sbjct: 324 -------AADDGKVAGTNAGAYPV 340
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} Length = 492 | Back alignment and structure |
|---|
Score = 96.5 bits (241), Expect = 1e-20
Identities = 56/264 (21%), Positives = 92/264 (34%), Gaps = 49/264 (18%)
Query: 661 NDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNK------ 714
++ I+G D E +++ D + + +I +ATGS P
Sbjct: 110 DEQDKIRGFAKFLD----EHTLQVDDHSQVIAKRIVIATGSRPNYPEFLAAAGSRLLTND 165
Query: 715 -VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRG--AVPFQ 771
+F L + P+S V V G IG+E + V V GR Q
Sbjct: 166 NLFELNDL-----------PKS-VAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANLQ 213
Query: 772 ESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG--TTIPADLVIVG 829
+ +E+ K F + F KA V S + E +G TT V+
Sbjct: 214 D---EEMKRYAEKTFN-EEFYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAA 269
Query: 830 IGTVLNTNYL--DGKGVELNGQKAVVVNEY-LETNVPGVYAGGDIAYAP--LHSFYNKNA 884
G N + L + +EL+ + + + +E L+T+V ++ GD LH
Sbjct: 270 TGRKANVDKLGLENTSIELDKKNSPLFDELTLQTSVDHIFVAGDANNTLTLLHE------ 323
Query: 885 SIGHYQLAQYHGRIAALNMVEKKT 908
A G++A N
Sbjct: 324 -------AADDGKVAGTNAGAYPV 340
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} Length = 492 | Back alignment and structure |
|---|
Score = 96.5 bits (241), Expect = 1e-20
Identities = 56/264 (21%), Positives = 92/264 (34%), Gaps = 49/264 (18%)
Query: 1132 NDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNK------ 1185
++ I+G D E +++ D + + +I +ATGS P
Sbjct: 110 DEQDKIRGFAKFLD----EHTLQVDDHSQVIAKRIVIATGSRPNYPEFLAAAGSRLLTND 165
Query: 1186 -VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRG--AVPFQ 1242
+F L + P+S V V G IG+E + V V GR Q
Sbjct: 166 NLFELNDL-----------PKS-VAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANLQ 213
Query: 1243 ESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG--TTIPADLVIVG 1300
+ +E+ K F + F KA V S + E +G TT V+
Sbjct: 214 D---EEMKRYAEKTFN-EEFYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAA 269
Query: 1301 IGTVLNTNYL--DGKGVELNGQKAVVVNEY-LETNVPGVYAGGDIAYAP--LHSFYNKNA 1355
G N + L + +EL+ + + + +E L+T+V ++ GD LH
Sbjct: 270 TGRKANVDKLGLENTSIELDKKNSPLFDELTLQTSVDHIFVAGDANNTLTLLHE------ 323
Query: 1356 SIGHYQLAQYHGRIAALNMVEKKT 1379
A G++A N
Sbjct: 324 -------AADDGKVAGTNAGAYPV 340
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 470 | Back alignment and structure |
|---|
Score = 96.4 bits (241), Expect = 1e-20
Identities = 63/235 (26%), Positives = 98/235 (41%), Gaps = 37/235 (15%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQA--DGVNK 162
K N + +KG +E + +G T + I +ATGS +++ D
Sbjct: 107 KKNKVTYVKGYGKFVSP--SEISVDTIEGENTVVKGKHIIIATGSDVKSLPGVTIDEKKI 164
Query: 163 VFY-----LRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP 217
V L + P+ +VVIG+ +IG+E + VTVV
Sbjct: 165 VSSTGALALSEI-----------PKK-LVVIGAGYIGLEMGSVWGRIGSEVTVV-----E 207
Query: 218 FQESLG----KEVGERITKLFESKGVKFVMKANVSSFEKNEKN-DVTAANLDNG--TTIP 270
F + E+ ++ + E +G+KF +K V + + +T G T I
Sbjct: 208 FASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIE 267
Query: 271 ADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 323
AD+V+V G T+ L D GVE + ++VNE TNV GVYA GD+ P
Sbjct: 268 ADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGP 322
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 470 | Back alignment and structure |
|---|
Score = 96.4 bits (241), Expect = 1e-20
Identities = 63/235 (26%), Positives = 98/235 (41%), Gaps = 37/235 (15%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQA--DGVNK 714
K N + +KG +E + +G T + I +ATGS +++ D
Sbjct: 107 KKNKVTYVKGYGKFVSP--SEISVDTIEGENTVVKGKHIIIATGSDVKSLPGVTIDEKKI 164
Query: 715 VFY-----LRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP 769
V L + P+ +VVIG+ +IG+E + VTVV
Sbjct: 165 VSSTGALALSEI-----------PKK-LVVIGAGYIGLEMGSVWGRIGSEVTVV-----E 207
Query: 770 FQESLG----KEVGERITKLFESKGVKFVMKANVSSFEKNEKN-DVTAANLDNG--TTIP 822
F + E+ ++ + E +G+KF +K V + + +T G T I
Sbjct: 208 FASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIE 267
Query: 823 ADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 875
AD+V+V G T+ L D GVE + ++VNE TNV GVYA GD+ P
Sbjct: 268 ADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGP 322
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 470 | Back alignment and structure |
|---|
Score = 96.4 bits (241), Expect = 1e-20
Identities = 63/235 (26%), Positives = 98/235 (41%), Gaps = 37/235 (15%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQA--DGVNK 1185
K N + +KG +E + +G T + I +ATGS +++ D
Sbjct: 107 KKNKVTYVKGYGKFVSP--SEISVDTIEGENTVVKGKHIIIATGSDVKSLPGVTIDEKKI 164
Query: 1186 VFY-----LRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP 1240
V L + P+ +VVIG+ +IG+E + VTVV
Sbjct: 165 VSSTGALALSEI-----------PKK-LVVIGAGYIGLEMGSVWGRIGSEVTVV-----E 207
Query: 1241 FQESLG----KEVGERITKLFESKGVKFVMKANVSSFEKNEKN-DVTAANLDNG--TTIP 1293
F + E+ ++ + E +G+KF +K V + + +T G T I
Sbjct: 208 FASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIE 267
Query: 1294 ADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 1346
AD+V+V G T+ L D GVE + ++VNE TNV GVYA GD+ P
Sbjct: 268 ADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGP 322
|
| >1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B* Length = 112 | Back alignment and structure |
|---|
Score = 87.3 bits (217), Expect = 1e-20
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 507 IYAVGTKCSHYGAPLVKGSLGDGR-VRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQN 565
++A +C+H L G +G V C H F + TG ++ P ++L + + I++
Sbjct: 39 LFATQDRCTHGDWSLSDGGYLEGDVVECSLHMGKFCVRTGKVKSPPPCEALKIFPIRIED 98
Query: 566 DD 567
+D
Sbjct: 99 ND 100
|
| >1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B* Length = 112 | Back alignment and structure |
|---|
Score = 87.3 bits (217), Expect = 1e-20
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 978 IYAVGTKCSHYGAPLVKGSLGDGR-VRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQN 1036
++A +C+H L G +G V C H F + TG ++ P ++L + + I++
Sbjct: 39 LFATQDRCTHGDWSLSDGGYLEGDVVECSLHMGKFCVRTGKVKSPPPCEALKIFPIRIED 98
Query: 1037 DD 1038
+D
Sbjct: 99 ND 100
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... Length = 478 | Back alignment and structure |
|---|
Score = 96.0 bits (240), Expect = 1e-20
Identities = 47/233 (20%), Positives = 89/233 (38%), Gaps = 39/233 (16%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQAD--GV---- 160
+ I +I+G + + I++ G I +ATG P T ++ G
Sbjct: 119 TKSHIEIIRGHAAFTSD--PKPTIEV-SGKKYTAPHILIATGGMPSTPHESQIPGASLGI 175
Query: 161 --NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP- 217
+ F L + P V++G+ +I +E A ++ +++ R
Sbjct: 176 TSDGFFQLEEL-----------PGR-SVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL 223
Query: 218 --FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNE-------KNDVTAANLDNGTT 268
F + T+ E+ GV+ + + V +K V
Sbjct: 224 RSFDS----MISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMI 279
Query: 269 IPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 319
D ++ IG V NT L+ G++ + + ++V+E+ TNV G+YA GD+
Sbjct: 280 PDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDV 332
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... Length = 478 | Back alignment and structure |
|---|
Score = 96.0 bits (240), Expect = 1e-20
Identities = 47/233 (20%), Positives = 89/233 (38%), Gaps = 39/233 (16%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQAD--GV---- 712
+ I +I+G + + I++ G I +ATG P T ++ G
Sbjct: 119 TKSHIEIIRGHAAFTSD--PKPTIEV-SGKKYTAPHILIATGGMPSTPHESQIPGASLGI 175
Query: 713 --NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP- 769
+ F L + P V++G+ +I +E A ++ +++ R
Sbjct: 176 TSDGFFQLEEL-----------PGR-SVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL 223
Query: 770 --FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNE-------KNDVTAANLDNGTT 820
F + T+ E+ GV+ + + V +K V
Sbjct: 224 RSFDS----MISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMI 279
Query: 821 IPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 871
D ++ IG V NT L+ G++ + + ++V+E+ TNV G+YA GD+
Sbjct: 280 PDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDV 332
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... Length = 478 | Back alignment and structure |
|---|
Score = 96.0 bits (240), Expect = 1e-20
Identities = 47/233 (20%), Positives = 89/233 (38%), Gaps = 39/233 (16%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQAD--GV---- 1183
+ I +I+G + + I++ G I +ATG P T ++ G
Sbjct: 119 TKSHIEIIRGHAAFTSD--PKPTIEV-SGKKYTAPHILIATGGMPSTPHESQIPGASLGI 175
Query: 1184 --NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP- 1240
+ F L + P V++G+ +I +E A ++ +++ R
Sbjct: 176 TSDGFFQLEEL-----------PGR-SVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL 223
Query: 1241 --FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNE-------KNDVTAANLDNGTT 1291
F + T+ E+ GV+ + + V +K V
Sbjct: 224 RSFDS----MISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMI 279
Query: 1292 IPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 1342
D ++ IG V NT L+ G++ + + ++V+E+ TNV G+YA GD+
Sbjct: 280 PDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDV 332
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* Length = 455 | Back alignment and structure |
|---|
Score = 95.3 bits (238), Expect = 2e-20
Identities = 50/231 (21%), Positives = 89/231 (38%), Gaps = 37/231 (16%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDG-TSIDFTKIYLATGSSPRTISQA--DGVNKV 163
K N I +G E+K+ +++ ++ I +ATGS+P A D V
Sbjct: 100 KKNGIARHQGTARFLS----ERKVLVEETGEELEARYILIATGSAPLIPPWAQVDYERVV 155
Query: 164 FY-----LRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF 218
V P+ ++V+G IG+E V V+ +
Sbjct: 156 TSTEALSFPEV-----------PKR-LIVVGGGVIGLELGVVWHRLGAEVIVL-----EY 198
Query: 219 QESLG----KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLV 274
+ + EV ++F+ +G+ V++ L+ G + AD V
Sbjct: 199 MDRILPTMDLEVSRAAERVFKKQGLTIRTGVRVTAVVPE-AKGARV-ELEGGEVLEADRV 256
Query: 275 IVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 323
+V +G T L + G+ + + + V+E+L T VP +YA GD+ P
Sbjct: 257 LVAVGRRPYTEGLSLENAGLSTDERGRIPVDEHLRTRVPHIYAIGDVVRGP 307
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* Length = 455 | Back alignment and structure |
|---|
Score = 95.3 bits (238), Expect = 2e-20
Identities = 50/231 (21%), Positives = 89/231 (38%), Gaps = 37/231 (16%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDG-TSIDFTKIYLATGSSPRTISQA--DGVNKV 715
K N I +G E+K+ +++ ++ I +ATGS+P A D V
Sbjct: 100 KKNGIARHQGTARFLS----ERKVLVEETGEELEARYILIATGSAPLIPPWAQVDYERVV 155
Query: 716 FY-----LRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF 770
V P+ ++V+G IG+E V V+ +
Sbjct: 156 TSTEALSFPEV-----------PKR-LIVVGGGVIGLELGVVWHRLGAEVIVL-----EY 198
Query: 771 QESLG----KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLV 826
+ + EV ++F+ +G+ V++ L+ G + AD V
Sbjct: 199 MDRILPTMDLEVSRAAERVFKKQGLTIRTGVRVTAVVPE-AKGARV-ELEGGEVLEADRV 256
Query: 827 IVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 875
+V +G T L + G+ + + + V+E+L T VP +YA GD+ P
Sbjct: 257 LVAVGRRPYTEGLSLENAGLSTDERGRIPVDEHLRTRVPHIYAIGDVVRGP 307
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* Length = 455 | Back alignment and structure |
|---|
Score = 95.3 bits (238), Expect = 2e-20
Identities = 50/231 (21%), Positives = 89/231 (38%), Gaps = 37/231 (16%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDG-TSIDFTKIYLATGSSPRTISQA--DGVNKV 1186
K N I +G E+K+ +++ ++ I +ATGS+P A D V
Sbjct: 100 KKNGIARHQGTARFLS----ERKVLVEETGEELEARYILIATGSAPLIPPWAQVDYERVV 155
Query: 1187 FY-----LRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF 1241
V P+ ++V+G IG+E V V+ +
Sbjct: 156 TSTEALSFPEV-----------PKR-LIVVGGGVIGLELGVVWHRLGAEVIVL-----EY 198
Query: 1242 QESLG----KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLV 1297
+ + EV ++F+ +G+ V++ L+ G + AD V
Sbjct: 199 MDRILPTMDLEVSRAAERVFKKQGLTIRTGVRVTAVVPE-AKGARV-ELEGGEVLEADRV 256
Query: 1298 IVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 1346
+V +G T L + G+ + + + V+E+L T VP +YA GD+ P
Sbjct: 257 LVAVGRRPYTEGLSLENAGLSTDERGRIPVDEHLRTRVPHIYAIGDVVRGP 307
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 500 | Back alignment and structure |
|---|
Score = 95.0 bits (237), Expect = 3e-20
Identities = 43/261 (16%), Positives = 84/261 (32%), Gaps = 43/261 (16%)
Query: 107 KDNDIHVIKGK---------KIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRT--IS 155
+ + + +G I + N K + ++ I +A G+ P +
Sbjct: 100 SKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVFPPVK 159
Query: 156 QADGV---NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCA---SKVKSVT 209
+ ++ F ++ + + ++GS +I +E
Sbjct: 160 GIENTISSDEFFNIKE------------SKK-IGIVGSGYIAVELINVIKRLGIDS---Y 203
Query: 210 VVGRGAVP---FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG 266
+ RG F E V + + + V A+V +K +++ D
Sbjct: 204 IFARGNRILRKFDE----SVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGR 259
Query: 267 TTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPL 324
D VI +G +T L+ VE N +VV+E T+V +YA GD
Sbjct: 260 IYEHFDHVIYCVGRSPDTENLKLEKLNVETN-NNYIVVDENQRTSVNNIYAVGDCCMVKK 318
Query: 325 HSFYNKNASIGHYQLAQYHGR 345
+ Y +Y +
Sbjct: 319 SKEIEDLNLLKLYNEERYLNK 339
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 500 | Back alignment and structure |
|---|
Score = 95.0 bits (237), Expect = 3e-20
Identities = 43/261 (16%), Positives = 84/261 (32%), Gaps = 43/261 (16%)
Query: 659 KDNDIHVIKGK---------KIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRT--IS 707
+ + + +G I + N K + ++ I +A G+ P +
Sbjct: 100 SKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVFPPVK 159
Query: 708 QADGV---NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCA---SKVKSVT 761
+ ++ F ++ + + ++GS +I +E
Sbjct: 160 GIENTISSDEFFNIKE------------SKK-IGIVGSGYIAVELINVIKRLGIDS---Y 203
Query: 762 VVGRGAVP---FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG 818
+ RG F E V + + + V A+V +K +++ D
Sbjct: 204 IFARGNRILRKFDE----SVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGR 259
Query: 819 TTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPL 876
D VI +G +T L+ VE N +VV+E T+V +YA GD
Sbjct: 260 IYEHFDHVIYCVGRSPDTENLKLEKLNVETN-NNYIVVDENQRTSVNNIYAVGDCCMVKK 318
Query: 877 HSFYNKNASIGHYQLAQYHGR 897
+ Y +Y +
Sbjct: 319 SKEIEDLNLLKLYNEERYLNK 339
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 500 | Back alignment and structure |
|---|
Score = 95.0 bits (237), Expect = 3e-20
Identities = 43/261 (16%), Positives = 84/261 (32%), Gaps = 43/261 (16%)
Query: 1130 KDNDIHVIKGK---------KIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRT--IS 1178
+ + + +G I + N K + ++ I +A G+ P +
Sbjct: 100 SKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVFPPVK 159
Query: 1179 QADGV---NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCA---SKVKSVT 1232
+ ++ F ++ + + ++GS +I +E
Sbjct: 160 GIENTISSDEFFNIKE------------SKK-IGIVGSGYIAVELINVIKRLGIDS---Y 203
Query: 1233 VVGRGAVP---FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG 1289
+ RG F E V + + + V A+V +K +++ D
Sbjct: 204 IFARGNRILRKFDE----SVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGR 259
Query: 1290 TTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPL 1347
D VI +G +T L+ VE N +VV+E T+V +YA GD
Sbjct: 260 IYEHFDHVIYCVGRSPDTENLKLEKLNVETN-NNYIVVDENQRTSVNNIYAVGDCCMVKK 318
Query: 1348 HSFYNKNASIGHYQLAQYHGR 1368
+ Y +Y +
Sbjct: 319 SKEIEDLNLLKLYNEERYLNK 339
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} Length = 491 | Back alignment and structure |
|---|
Score = 94.5 bits (236), Expect = 5e-20
Identities = 56/237 (23%), Positives = 100/237 (42%), Gaps = 39/237 (16%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTI----SQADGV 160
K N I +G + + + + G ++ + +ATGS I D
Sbjct: 126 KKNKIDGFQGTGKVLGQ--GKVSVTNEKGEEQVLEAKNVVIATGSDVAGIPGVEVAFDEK 183
Query: 161 NKVFY-----LRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGA 215
V L V P S ++V+G IG+E + A VTVV
Sbjct: 184 TIVSSTGALALEKV-----------PAS-MIVVGGGVIGLELGSVWARLGAKVTVV---- 227
Query: 216 VPFQESLG----KEVGERITKLFESKGVKFVMKANVSSFEKNEKN-DVTAANLDNG--TT 268
F +++ EV +++ ++ +G+ F + A V+ K+ VT + G TT
Sbjct: 228 -EFLDTILGGMDGEVAKQLQRMLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATT 286
Query: 269 IPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 323
+ A++V++ G +T+ L GV L+ + V ++ + +T++ GVYA GD+ P
Sbjct: 287 LDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDRHFQTSIAGVYAIGDVVRGP 343
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} Length = 491 | Back alignment and structure |
|---|
Score = 94.5 bits (236), Expect = 5e-20
Identities = 56/237 (23%), Positives = 100/237 (42%), Gaps = 39/237 (16%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTI----SQADGV 712
K N I +G + + + + G ++ + +ATGS I D
Sbjct: 126 KKNKIDGFQGTGKVLGQ--GKVSVTNEKGEEQVLEAKNVVIATGSDVAGIPGVEVAFDEK 183
Query: 713 NKVFY-----LRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGA 767
V L V P S ++V+G IG+E + A VTVV
Sbjct: 184 TIVSSTGALALEKV-----------PAS-MIVVGGGVIGLELGSVWARLGAKVTVV---- 227
Query: 768 VPFQESLG----KEVGERITKLFESKGVKFVMKANVSSFEKNEKN-DVTAANLDNG--TT 820
F +++ EV +++ ++ +G+ F + A V+ K+ VT + G TT
Sbjct: 228 -EFLDTILGGMDGEVAKQLQRMLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATT 286
Query: 821 IPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 875
+ A++V++ G +T+ L GV L+ + V ++ + +T++ GVYA GD+ P
Sbjct: 287 LDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDRHFQTSIAGVYAIGDVVRGP 343
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} Length = 491 | Back alignment and structure |
|---|
Score = 94.5 bits (236), Expect = 5e-20
Identities = 56/237 (23%), Positives = 100/237 (42%), Gaps = 39/237 (16%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTI----SQADGV 1183
K N I +G + + + + G ++ + +ATGS I D
Sbjct: 126 KKNKIDGFQGTGKVLGQ--GKVSVTNEKGEEQVLEAKNVVIATGSDVAGIPGVEVAFDEK 183
Query: 1184 NKVFY-----LRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGA 1238
V L V P S ++V+G IG+E + A VTVV
Sbjct: 184 TIVSSTGALALEKV-----------PAS-MIVVGGGVIGLELGSVWARLGAKVTVV---- 227
Query: 1239 VPFQESLG----KEVGERITKLFESKGVKFVMKANVSSFEKNEKN-DVTAANLDNG--TT 1291
F +++ EV +++ ++ +G+ F + A V+ K+ VT + G TT
Sbjct: 228 -EFLDTILGGMDGEVAKQLQRMLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATT 286
Query: 1292 IPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 1346
+ A++V++ G +T+ L GV L+ + V ++ + +T++ GVYA GD+ P
Sbjct: 287 LDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDRHFQTSIAGVYAIGDVVRGP 343
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} Length = 466 | Back alignment and structure |
|---|
Score = 91.5 bits (228), Expect = 4e-19
Identities = 38/228 (16%), Positives = 89/228 (39%), Gaps = 25/228 (10%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQADGVNKVF 164
+ + KG I D +K +G + + +A+G+ + GV
Sbjct: 100 QYETLTFYKGYVKIKDP--THVIVKTDEGKEIEAETRYMIIASGAETAKLRLP-GVEYCL 156
Query: 165 YLRTVEDANNIAPHIT--PESNVVVIGSSFIGMEAAAFCASKVKSVTVV---GRGAVPFQ 219
T +D P+ +V+IG+ +IG+E A+ ++ R + +
Sbjct: 157 ---TSDDIFGYKTSFRKLPQD-MVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLE 212
Query: 220 ESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDV-TAANLDNG--TTIPADLVIV 276
+ +++ + + + + V+ +K + ++ + +G +I + V++
Sbjct: 213 D---QDIVNTLLSIL---KLNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVL 266
Query: 277 GIGTVLNT-NYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 323
G G+ ++ + +VV+E ++TN+P V+A GD
Sbjct: 267 AAGRRPVIPEGAREIGLSIS-KTGIVVDETMKTNIPNVFATGDANGLA 313
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} Length = 466 | Back alignment and structure |
|---|
Score = 91.5 bits (228), Expect = 4e-19
Identities = 38/228 (16%), Positives = 89/228 (39%), Gaps = 25/228 (10%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQADGVNKVF 716
+ + KG I D +K +G + + +A+G+ + GV
Sbjct: 100 QYETLTFYKGYVKIKDP--THVIVKTDEGKEIEAETRYMIIASGAETAKLRLP-GVEYCL 156
Query: 717 YLRTVEDANNIAPHIT--PESNVVVIGSSFIGMEAAAFCASKVKSVTVV---GRGAVPFQ 771
T +D P+ +V+IG+ +IG+E A+ ++ R + +
Sbjct: 157 ---TSDDIFGYKTSFRKLPQD-MVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLE 212
Query: 772 ESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDV-TAANLDNG--TTIPADLVIV 828
+ +++ + + + + V+ +K + ++ + +G +I + V++
Sbjct: 213 D---QDIVNTLLSIL---KLNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVL 266
Query: 829 GIGTVLNT-NYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 875
G G+ ++ + +VV+E ++TN+P V+A GD
Sbjct: 267 AAGRRPVIPEGAREIGLSIS-KTGIVVDETMKTNIPNVFATGDANGLA 313
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} Length = 466 | Back alignment and structure |
|---|
Score = 91.5 bits (228), Expect = 4e-19
Identities = 38/228 (16%), Positives = 89/228 (39%), Gaps = 25/228 (10%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQADGVNKVF 1187
+ + KG I D +K +G + + +A+G+ + GV
Sbjct: 100 QYETLTFYKGYVKIKDP--THVIVKTDEGKEIEAETRYMIIASGAETAKLRLP-GVEYCL 156
Query: 1188 YLRTVEDANNIAPHIT--PESNVVVIGSSFIGMEAAAFCASKVKSVTVV---GRGAVPFQ 1242
T +D P+ +V+IG+ +IG+E A+ ++ R + +
Sbjct: 157 ---TSDDIFGYKTSFRKLPQD-MVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLE 212
Query: 1243 ESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDV-TAANLDNG--TTIPADLVIV 1299
+ +++ + + + + V+ +K + ++ + +G +I + V++
Sbjct: 213 D---QDIVNTLLSIL---KLNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVL 266
Query: 1300 GIGTVLNT-NYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 1346
G G+ ++ + +VV+E ++TN+P V+A GD
Sbjct: 267 AAGRRPVIPEGAREIGLSIS-KTGIVVDETMKTNIPNVFATGDANGLA 313
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* Length = 488 | Back alignment and structure |
|---|
Score = 91.5 bits (228), Expect = 4e-19
Identities = 51/235 (21%), Positives = 92/235 (39%), Gaps = 44/235 (18%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFT--KIYLATGSSPRTISQADGVNK-- 162
+D + K D + + + G + + I +ATG PR +Q G +
Sbjct: 115 QDRKVKYFNIKASFVDE--HTVRGVDKGGKATLLSAEHIVIATGGRPRYPTQVKGALEYG 172
Query: 163 -----VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKS----VTVVGR 213
+F+L+ P +V+G+S++ +E CA + TV+ R
Sbjct: 173 ITSDDIFWLKES-----------PGK-TLVVGASYVALE----CAGFLTGIGLDTTVMMR 216
Query: 214 GAV--PFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTA----ANLDNGT 267
F + ++ +T+ ES G +F+ S +K N +
Sbjct: 217 SIPLRGFDQ----QMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKED 272
Query: 268 TIPADLVIVGIGTVLNTNY--LDGKGVELNGQ-KAVVVNEYLETNVPGVYAGGDI 319
T D V+ IG V T L+ G+ N + + ++V+ T+VP +YA GD+
Sbjct: 273 TGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQEATSVPHIYAIGDV 327
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* Length = 488 | Back alignment and structure |
|---|
Score = 91.5 bits (228), Expect = 4e-19
Identities = 51/235 (21%), Positives = 92/235 (39%), Gaps = 44/235 (18%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFT--KIYLATGSSPRTISQADGVNK-- 714
+D + K D + + + G + + I +ATG PR +Q G +
Sbjct: 115 QDRKVKYFNIKASFVDE--HTVRGVDKGGKATLLSAEHIVIATGGRPRYPTQVKGALEYG 172
Query: 715 -----VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKS----VTVVGR 765
+F+L+ P +V+G+S++ +E CA + TV+ R
Sbjct: 173 ITSDDIFWLKES-----------PGK-TLVVGASYVALE----CAGFLTGIGLDTTVMMR 216
Query: 766 GAV--PFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTA----ANLDNGT 819
F + ++ +T+ ES G +F+ S +K N +
Sbjct: 217 SIPLRGFDQ----QMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKED 272
Query: 820 TIPADLVIVGIGTVLNTNY--LDGKGVELNGQ-KAVVVNEYLETNVPGVYAGGDI 871
T D V+ IG V T L+ G+ N + + ++V+ T+VP +YA GD+
Sbjct: 273 TGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQEATSVPHIYAIGDV 327
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* Length = 488 | Back alignment and structure |
|---|
Score = 91.5 bits (228), Expect = 4e-19
Identities = 51/235 (21%), Positives = 92/235 (39%), Gaps = 44/235 (18%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFT--KIYLATGSSPRTISQADGVNK-- 1185
+D + K D + + + G + + I +ATG PR +Q G +
Sbjct: 115 QDRKVKYFNIKASFVDE--HTVRGVDKGGKATLLSAEHIVIATGGRPRYPTQVKGALEYG 172
Query: 1186 -----VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKS----VTVVGR 1236
+F+L+ P +V+G+S++ +E CA + TV+ R
Sbjct: 173 ITSDDIFWLKES-----------PGK-TLVVGASYVALE----CAGFLTGIGLDTTVMMR 216
Query: 1237 GAV--PFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTA----ANLDNGT 1290
F + ++ +T+ ES G +F+ S +K N +
Sbjct: 217 SIPLRGFDQ----QMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKED 272
Query: 1291 TIPADLVIVGIGTVLNTNY--LDGKGVELNGQ-KAVVVNEYLETNVPGVYAGGDI 1342
T D V+ IG V T L+ G+ N + + ++V+ T+VP +YA GD+
Sbjct: 273 TGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQEATSVPHIYAIGDV 327
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* Length = 476 | Back alignment and structure |
|---|
Score = 91.4 bits (228), Expect = 4e-19
Identities = 54/226 (23%), Positives = 93/226 (41%), Gaps = 21/226 (9%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQADGVNKVF 164
K N + + +G + + ++ DG +D + LA+GS P I A
Sbjct: 110 KANGVTLFEGHGKLLAG--KKVEVTAADGSSQVLDTENVILASGSKPVEIPPAPVDQD-- 165
Query: 165 YLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLG- 223
V+ + P + VIG+ IG+E + A VTV+ +
Sbjct: 166 --VIVDSTGALDFQNVPGK-LGVIGAGVIGLELGSVWARLGAEVTVL-----EAMDKFLP 217
Query: 224 ---KEVGERITKLFESKGVKFVMKANVSSFEKNEKN-DVTAANLDNGTTIPADLVIVGIG 279
++V + K+ +G+K ++ A V+ E K V + + + D +IV +G
Sbjct: 218 AVDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG 277
Query: 280 TVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 323
T L GV L+ + + V++Y T+VPGVYA GD+
Sbjct: 278 RRPVTTDLLAADSGVTLDERGFIYVDDYCATSVPGVYAIGDVVRGA 323
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* Length = 476 | Back alignment and structure |
|---|
Score = 91.4 bits (228), Expect = 4e-19
Identities = 54/226 (23%), Positives = 93/226 (41%), Gaps = 21/226 (9%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQADGVNKVF 716
K N + + +G + + ++ DG +D + LA+GS P I A
Sbjct: 110 KANGVTLFEGHGKLLAG--KKVEVTAADGSSQVLDTENVILASGSKPVEIPPAPVDQD-- 165
Query: 717 YLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLG- 775
V+ + P + VIG+ IG+E + A VTV+ +
Sbjct: 166 --VIVDSTGALDFQNVPGK-LGVIGAGVIGLELGSVWARLGAEVTVL-----EAMDKFLP 217
Query: 776 ---KEVGERITKLFESKGVKFVMKANVSSFEKNEKN-DVTAANLDNGTTIPADLVIVGIG 831
++V + K+ +G+K ++ A V+ E K V + + + D +IV +G
Sbjct: 218 AVDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG 277
Query: 832 TVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 875
T L GV L+ + + V++Y T+VPGVYA GD+
Sbjct: 278 RRPVTTDLLAADSGVTLDERGFIYVDDYCATSVPGVYAIGDVVRGA 323
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* Length = 476 | Back alignment and structure |
|---|
Score = 91.4 bits (228), Expect = 4e-19
Identities = 54/226 (23%), Positives = 93/226 (41%), Gaps = 21/226 (9%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQADGVNKVF 1187
K N + + +G + + ++ DG +D + LA+GS P I A
Sbjct: 110 KANGVTLFEGHGKLLAG--KKVEVTAADGSSQVLDTENVILASGSKPVEIPPAPVDQD-- 165
Query: 1188 YLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLG- 1246
V+ + P + VIG+ IG+E + A VTV+ +
Sbjct: 166 --VIVDSTGALDFQNVPGK-LGVIGAGVIGLELGSVWARLGAEVTVL-----EAMDKFLP 217
Query: 1247 ---KEVGERITKLFESKGVKFVMKANVSSFEKNEKN-DVTAANLDNGTTIPADLVIVGIG 1302
++V + K+ +G+K ++ A V+ E K V + + + D +IV +G
Sbjct: 218 AVDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG 277
Query: 1303 TVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 1346
T L GV L+ + + V++Y T+VPGVYA GD+
Sbjct: 278 RRPVTTDLLAADSGVTLDERGFIYVDDYCATSVPGVYAIGDVVRGA 323
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* Length = 464 | Back alignment and structure |
|---|
Score = 89.9 bits (224), Expect = 1e-18
Identities = 51/226 (22%), Positives = 93/226 (41%), Gaps = 24/226 (10%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYL 166
K N + +++G + K++++ G + LATGS P + V+
Sbjct: 104 KGNGVELLRGFARLVG----PKEVEV-GGERYGAKSLILATGSEPLELKGFPFGEDVW-- 156
Query: 167 RTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLG--- 223
A + + P+ ++VIG +G+E VT++ + +
Sbjct: 157 -DSTRALKVEEGL-PKR-LLVIGGGAVGLELGQVYRRLGAEVTLI-----EYMPEILPQG 208
Query: 224 -KEVGERITKLFESKGVKFVMKANVSSFEKNEKN-DVTAANLDNG--TTIPADLVIVGIG 279
E + + E +G++ K +EK + V + G + D V+V +G
Sbjct: 209 DPETAALLRRALEKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVG 268
Query: 280 TVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 323
T L + GV+++ + + VN +ET+VPGVYA GD A P
Sbjct: 269 RKPRTEGLGLEKAGVKVDERGFIRVNARMETSVPGVYAIGDAARPP 314
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* Length = 464 | Back alignment and structure |
|---|
Score = 89.9 bits (224), Expect = 1e-18
Identities = 51/226 (22%), Positives = 93/226 (41%), Gaps = 24/226 (10%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYL 718
K N + +++G + K++++ G + LATGS P + V+
Sbjct: 104 KGNGVELLRGFARLVG----PKEVEV-GGERYGAKSLILATGSEPLELKGFPFGEDVW-- 156
Query: 719 RTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLG--- 775
A + + P+ ++VIG +G+E VT++ + +
Sbjct: 157 -DSTRALKVEEGL-PKR-LLVIGGGAVGLELGQVYRRLGAEVTLI-----EYMPEILPQG 208
Query: 776 -KEVGERITKLFESKGVKFVMKANVSSFEKNEKN-DVTAANLDNG--TTIPADLVIVGIG 831
E + + E +G++ K +EK + V + G + D V+V +G
Sbjct: 209 DPETAALLRRALEKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVG 268
Query: 832 TVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 875
T L + GV+++ + + VN +ET+VPGVYA GD A P
Sbjct: 269 RKPRTEGLGLEKAGVKVDERGFIRVNARMETSVPGVYAIGDAARPP 314
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* Length = 464 | Back alignment and structure |
|---|
Score = 89.9 bits (224), Expect = 1e-18
Identities = 51/226 (22%), Positives = 93/226 (41%), Gaps = 24/226 (10%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYL 1189
K N + +++G + K++++ G + LATGS P + V+
Sbjct: 104 KGNGVELLRGFARLVG----PKEVEV-GGERYGAKSLILATGSEPLELKGFPFGEDVW-- 156
Query: 1190 RTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLG--- 1246
A + + P+ ++VIG +G+E VT++ + +
Sbjct: 157 -DSTRALKVEEGL-PKR-LLVIGGGAVGLELGQVYRRLGAEVTLI-----EYMPEILPQG 208
Query: 1247 -KEVGERITKLFESKGVKFVMKANVSSFEKNEKN-DVTAANLDNG--TTIPADLVIVGIG 1302
E + + E +G++ K +EK + V + G + D V+V +G
Sbjct: 209 DPETAALLRRALEKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVG 268
Query: 1303 TVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 1346
T L + GV+++ + + VN +ET+VPGVYA GD A P
Sbjct: 269 RKPRTEGLGLEKAGVKVDERGFIRVNARMETSVPGVYAIGDAARPP 314
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 455 | Back alignment and structure |
|---|
Score = 89.1 bits (222), Expect = 2e-18
Identities = 61/234 (26%), Positives = 101/234 (43%), Gaps = 39/234 (16%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDGT-SIDFTKIYLATGSSPRTISQADGVNKVF- 164
K N + ++KG+ D+ N ++ D + F +ATGS P + N++
Sbjct: 102 KGNKVEIVKGEAYFVDA--NTVRVVNGDSAQTYTFKNAIIATGSRPIELPNFKFSNRILD 159
Query: 165 -----YLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCA--SKVKSVTVVGRGAV 216
L V P+S +VVIG +IG+E A+ +KV T++
Sbjct: 160 STGALNLGEV-----------PKS-LVVIGGGYIGIELGTAYANFGTKV---TIL----- 199
Query: 217 PFQESLG----KEVGERITKLFESKGVKFVMKANVSSFEKNEKN-DVTAANLDNGTTIPA 271
+ K++ I K + KGV+ V A E+ E VT TI A
Sbjct: 200 EGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDA 259
Query: 272 DLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 323
D V+V +G NT+ L + G+++ + + V++ T+VP ++A GDI P
Sbjct: 260 DYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIVPGP 313
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 455 | Back alignment and structure |
|---|
Score = 89.1 bits (222), Expect = 2e-18
Identities = 61/234 (26%), Positives = 101/234 (43%), Gaps = 39/234 (16%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDGT-SIDFTKIYLATGSSPRTISQADGVNKVF- 716
K N + ++KG+ D+ N ++ D + F +ATGS P + N++
Sbjct: 102 KGNKVEIVKGEAYFVDA--NTVRVVNGDSAQTYTFKNAIIATGSRPIELPNFKFSNRILD 159
Query: 717 -----YLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCA--SKVKSVTVVGRGAV 768
L V P+S +VVIG +IG+E A+ +KV T++
Sbjct: 160 STGALNLGEV-----------PKS-LVVIGGGYIGIELGTAYANFGTKV---TIL----- 199
Query: 769 PFQESLG----KEVGERITKLFESKGVKFVMKANVSSFEKNEKN-DVTAANLDNGTTIPA 823
+ K++ I K + KGV+ V A E+ E VT TI A
Sbjct: 200 EGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDA 259
Query: 824 DLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 875
D V+V +G NT+ L + G+++ + + V++ T+VP ++A GDI P
Sbjct: 260 DYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIVPGP 313
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 455 | Back alignment and structure |
|---|
Score = 89.1 bits (222), Expect = 2e-18
Identities = 61/234 (26%), Positives = 101/234 (43%), Gaps = 39/234 (16%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDGT-SIDFTKIYLATGSSPRTISQADGVNKVF- 1187
K N + ++KG+ D+ N ++ D + F +ATGS P + N++
Sbjct: 102 KGNKVEIVKGEAYFVDA--NTVRVVNGDSAQTYTFKNAIIATGSRPIELPNFKFSNRILD 159
Query: 1188 -----YLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCA--SKVKSVTVVGRGAV 1239
L V P+S +VVIG +IG+E A+ +KV T++
Sbjct: 160 STGALNLGEV-----------PKS-LVVIGGGYIGIELGTAYANFGTKV---TIL----- 199
Query: 1240 PFQESLG----KEVGERITKLFESKGVKFVMKANVSSFEKNEKN-DVTAANLDNGTTIPA 1294
+ K++ I K + KGV+ V A E+ E VT TI A
Sbjct: 200 EGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDA 259
Query: 1295 DLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 1346
D V+V +G NT+ L + G+++ + + V++ T+VP ++A GDI P
Sbjct: 260 DYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIVPGP 313
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* Length = 304 | Back alignment and structure |
|---|
Score = 83.7 bits (208), Expect = 2e-17
Identities = 16/143 (11%), Positives = 45/143 (31%), Gaps = 12/143 (8%)
Query: 185 VVVIGSSFIGMEAAAFCASKV-KSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVM 243
+++I + + + G E+ + I +K + +
Sbjct: 149 LIIISENEDHTLHMTKLVYNWSTDLVIATNG---------NELSQTIMDELSNKNIPVIT 199
Query: 244 KANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVN 303
++ + + + E + +G I + +++ G EL V++
Sbjct: 200 ES-IRTLQ-GEGGYLKKVEFHSGLRIERAGGFIVPTFFRPNQFIEQLGCELQSNGTFVID 257
Query: 304 EYLETNVPGVYAGGDIAYAPLHS 326
++ T+ +Y G+ S
Sbjct: 258 DFGRTSEKNIYLAGETTTQGPSS 280
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* Length = 304 | Back alignment and structure |
|---|
Score = 83.7 bits (208), Expect = 2e-17
Identities = 16/143 (11%), Positives = 45/143 (31%), Gaps = 12/143 (8%)
Query: 737 VVVIGSSFIGMEAAAFCASKV-KSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVM 795
+++I + + + G E+ + I +K + +
Sbjct: 149 LIIISENEDHTLHMTKLVYNWSTDLVIATNG---------NELSQTIMDELSNKNIPVIT 199
Query: 796 KANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVN 855
++ + + + E + +G I + +++ G EL V++
Sbjct: 200 ES-IRTLQ-GEGGYLKKVEFHSGLRIERAGGFIVPTFFRPNQFIEQLGCELQSNGTFVID 257
Query: 856 EYLETNVPGVYAGGDIAYAPLHS 878
++ T+ +Y G+ S
Sbjct: 258 DFGRTSEKNIYLAGETTTQGPSS 280
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* Length = 304 | Back alignment and structure |
|---|
Score = 83.7 bits (208), Expect = 2e-17
Identities = 16/143 (11%), Positives = 45/143 (31%), Gaps = 12/143 (8%)
Query: 1208 VVVIGSSFIGMEAAAFCASKV-KSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVM 1266
+++I + + + G E+ + I +K + +
Sbjct: 149 LIIISENEDHTLHMTKLVYNWSTDLVIATNG---------NELSQTIMDELSNKNIPVIT 199
Query: 1267 KANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVN 1326
++ + + + E + +G I + +++ G EL V++
Sbjct: 200 ES-IRTLQ-GEGGYLKKVEFHSGLRIERAGGFIVPTFFRPNQFIEQLGCELQSNGTFVID 257
Query: 1327 EYLETNVPGVYAGGDIAYAPLHS 1349
++ T+ +Y G+ S
Sbjct: 258 DFGRTSEKNIYLAGETTTQGPSS 280
|
| >1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A Length = 111 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 3e-17
Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Query: 965 GMDPLAAQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGM 1024
G + L E + A C H L +GS G + C H FN TG + P
Sbjct: 24 GTEVLIVNSEEHGVKAYQAMCPHQEILLSEGSYEGGVITCRAHLWTFNDGTGHGIN-PDD 82
Query: 1025 DSLPCYKVTIQNDD 1038
+L Y V ++ DD
Sbjct: 83 AALAEYPVEVKGDD 96
|
| >1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A Length = 111 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 4e-17
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 507 IYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQND 566
+ A C H L +GS G + C H FN TG + P +L Y V ++ D
Sbjct: 37 VKAYQAMCPHQEILLSEGSYEGGVITCRAHLWTFNDGTGHGIN-PDDAALAEYPVEVKGD 95
Query: 567 D 567
D
Sbjct: 96 D 96
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* Length = 474 | Back alignment and structure |
|---|
Score = 85.2 bits (212), Expect = 4e-17
Identities = 59/240 (24%), Positives = 92/240 (38%), Gaps = 45/240 (18%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQA--DGVNK 162
K N + + G I+ N+ DG ID I +ATGS D
Sbjct: 108 KQNKVVHVNGYGKITGK--NQVTATKADGGTQVIDTKNILIATGSEVTPFPGITIDEDTI 165
Query: 163 V-----FYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCA---SKVKSVTVVGRG 214
V L+ V PE +VVIG+ IG+E + + V T V
Sbjct: 166 VSSTGALSLKKV-----------PEK-MVVIGAGVIGVELGSVWQRLGADV---TAV--- 207
Query: 215 AVPFQESLG-----KEVGERITKLFESKGVKFVMKANVSSFEKNEKND--VTAANLDNG- 266
F +G E+ + ++ + +G KF + V+ K V+ G
Sbjct: 208 --EFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGK 265
Query: 267 -TTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 323
I D+++V IG T L + G+EL+ + + VN +T +P +YA GD+ P
Sbjct: 266 AEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGP 325
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* Length = 474 | Back alignment and structure |
|---|
Score = 85.2 bits (212), Expect = 4e-17
Identities = 59/240 (24%), Positives = 92/240 (38%), Gaps = 45/240 (18%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQA--DGVNK 714
K N + + G I+ N+ DG ID I +ATGS D
Sbjct: 108 KQNKVVHVNGYGKITGK--NQVTATKADGGTQVIDTKNILIATGSEVTPFPGITIDEDTI 165
Query: 715 V-----FYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCA---SKVKSVTVVGRG 766
V L+ V PE +VVIG+ IG+E + + V T V
Sbjct: 166 VSSTGALSLKKV-----------PEK-MVVIGAGVIGVELGSVWQRLGADV---TAV--- 207
Query: 767 AVPFQESLG-----KEVGERITKLFESKGVKFVMKANVSSFEKNEKND--VTAANLDNG- 818
F +G E+ + ++ + +G KF + V+ K V+ G
Sbjct: 208 --EFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGK 265
Query: 819 -TTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 875
I D+++V IG T L + G+EL+ + + VN +T +P +YA GD+ P
Sbjct: 266 AEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGP 325
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* Length = 474 | Back alignment and structure |
|---|
Score = 85.2 bits (212), Expect = 4e-17
Identities = 59/240 (24%), Positives = 92/240 (38%), Gaps = 45/240 (18%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQA--DGVNK 1185
K N + + G I+ N+ DG ID I +ATGS D
Sbjct: 108 KQNKVVHVNGYGKITGK--NQVTATKADGGTQVIDTKNILIATGSEVTPFPGITIDEDTI 165
Query: 1186 V-----FYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCA---SKVKSVTVVGRG 1237
V L+ V PE +VVIG+ IG+E + + V T V
Sbjct: 166 VSSTGALSLKKV-----------PEK-MVVIGAGVIGVELGSVWQRLGADV---TAV--- 207
Query: 1238 AVPFQESLG-----KEVGERITKLFESKGVKFVMKANVSSFEKNEKND--VTAANLDNG- 1289
F +G E+ + ++ + +G KF + V+ K V+ G
Sbjct: 208 --EFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGK 265
Query: 1290 -TTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 1346
I D+++V IG T L + G+EL+ + + VN +T +P +YA GD+ P
Sbjct: 266 AEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGP 325
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* Length = 519 | Back alignment and structure |
|---|
Score = 85.3 bits (212), Expect = 4e-17
Identities = 47/235 (20%), Positives = 87/235 (37%), Gaps = 42/235 (17%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFT--KIYLATGSSPRTISQADGV---- 160
++ + + K G ++ + +ATG PR G
Sbjct: 141 REKKVVYENAYGQFIGP--HRIKATNNKGKEKIYSAERFLIATGERPR-YLGIPGDKEYC 197
Query: 161 ---NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCASKVKSVTVVGRGAV 216
+ +F L P +V+G+S++ +E A + VTV+ R +
Sbjct: 198 ISSDDLFSLPYC-----------PGK-TLVVGASYVALECAGFLAGIGLD-VTVMVRSIL 244
Query: 217 --PFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKND-------VTAANLDNGT 267
F + ++ +I + E G+KF+ + E+ E + N +
Sbjct: 245 LRGFDQ----DMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEII 300
Query: 268 TIPADLVIVGIGTVLNTNY--LDGKGVELNG-QKAVVVNEYLETNVPGVYAGGDI 319
+ V++ IG T L+ GV++N + V + +TNVP +YA GDI
Sbjct: 301 EGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDI 355
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* Length = 519 | Back alignment and structure |
|---|
Score = 85.3 bits (212), Expect = 4e-17
Identities = 47/235 (20%), Positives = 87/235 (37%), Gaps = 42/235 (17%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFT--KIYLATGSSPRTISQADGV---- 712
++ + + K G ++ + +ATG PR G
Sbjct: 141 REKKVVYENAYGQFIGP--HRIKATNNKGKEKIYSAERFLIATGERPR-YLGIPGDKEYC 197
Query: 713 ---NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCASKVKSVTVVGRGAV 768
+ +F L P +V+G+S++ +E A + VTV+ R +
Sbjct: 198 ISSDDLFSLPYC-----------PGK-TLVVGASYVALECAGFLAGIGLD-VTVMVRSIL 244
Query: 769 --PFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKND-------VTAANLDNGT 819
F + ++ +I + E G+KF+ + E+ E + N +
Sbjct: 245 LRGFDQ----DMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEII 300
Query: 820 TIPADLVIVGIGTVLNTNY--LDGKGVELNG-QKAVVVNEYLETNVPGVYAGGDI 871
+ V++ IG T L+ GV++N + V + +TNVP +YA GDI
Sbjct: 301 EGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDI 355
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* Length = 519 | Back alignment and structure |
|---|
Score = 85.3 bits (212), Expect = 4e-17
Identities = 47/235 (20%), Positives = 87/235 (37%), Gaps = 42/235 (17%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFT--KIYLATGSSPRTISQADGV---- 1183
++ + + K G ++ + +ATG PR G
Sbjct: 141 REKKVVYENAYGQFIGP--HRIKATNNKGKEKIYSAERFLIATGERPR-YLGIPGDKEYC 197
Query: 1184 ---NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCASKVKSVTVVGRGAV 1239
+ +F L P +V+G+S++ +E A + VTV+ R +
Sbjct: 198 ISSDDLFSLPYC-----------PGK-TLVVGASYVALECAGFLAGIGLD-VTVMVRSIL 244
Query: 1240 --PFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKND-------VTAANLDNGT 1290
F + ++ +I + E G+KF+ + E+ E + N +
Sbjct: 245 LRGFDQ----DMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEII 300
Query: 1291 TIPADLVIVGIGTVLNTNY--LDGKGVELNG-QKAVVVNEYLETNVPGVYAGGDI 1342
+ V++ IG T L+ GV++N + V + +TNVP +YA GDI
Sbjct: 301 EGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDI 355
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* Length = 598 | Back alignment and structure |
|---|
Score = 85.1 bits (211), Expect = 6e-17
Identities = 56/237 (23%), Positives = 93/237 (39%), Gaps = 43/237 (18%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFT--KIYLATGSSPRTISQADGV---- 160
+DN + + K + +E +I ++ T KI LATG P + G
Sbjct: 217 RDNQVTYLNAKGRLISP--HEVQITDKNQKVSTITGNKIILATGERP-KYPEIPGAVEYG 273
Query: 161 ---NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAV- 216
+ +F L P +VIG+S++ +E A F AS VTV+ R +
Sbjct: 274 ITSDDLFSLPYF-----------PGK-TLVIGASYVALECAGFLASLGGDVTVMVRSILL 321
Query: 217 -PFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKN-----EKND----VTAANLDNG 266
F + ++ E++ E+ GVKF ++ E N + + +G
Sbjct: 322 RGFDQ----QMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDG 377
Query: 267 TT--IPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 319
+ VI +G + + GV+L+ VV + +T V VYA GDI
Sbjct: 378 KKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTDDEQTTVSNVYAIGDI 434
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* Length = 598 | Back alignment and structure |
|---|
Score = 85.1 bits (211), Expect = 6e-17
Identities = 56/237 (23%), Positives = 93/237 (39%), Gaps = 43/237 (18%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFT--KIYLATGSSPRTISQADGV---- 712
+DN + + K + +E +I ++ T KI LATG P + G
Sbjct: 217 RDNQVTYLNAKGRLISP--HEVQITDKNQKVSTITGNKIILATGERP-KYPEIPGAVEYG 273
Query: 713 ---NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAV- 768
+ +F L P +VIG+S++ +E A F AS VTV+ R +
Sbjct: 274 ITSDDLFSLPYF-----------PGK-TLVIGASYVALECAGFLASLGGDVTVMVRSILL 321
Query: 769 -PFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKN-----EKND----VTAANLDNG 818
F + ++ E++ E+ GVKF ++ E N + + +G
Sbjct: 322 RGFDQ----QMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDG 377
Query: 819 TT--IPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 871
+ VI +G + + GV+L+ VV + +T V VYA GDI
Sbjct: 378 KKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTDDEQTTVSNVYAIGDI 434
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* Length = 598 | Back alignment and structure |
|---|
Score = 85.1 bits (211), Expect = 6e-17
Identities = 56/237 (23%), Positives = 93/237 (39%), Gaps = 43/237 (18%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFT--KIYLATGSSPRTISQADGV---- 1183
+DN + + K + +E +I ++ T KI LATG P + G
Sbjct: 217 RDNQVTYLNAKGRLISP--HEVQITDKNQKVSTITGNKIILATGERP-KYPEIPGAVEYG 273
Query: 1184 ---NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAV- 1239
+ +F L P +VIG+S++ +E A F AS VTV+ R +
Sbjct: 274 ITSDDLFSLPYF-----------PGK-TLVIGASYVALECAGFLASLGGDVTVMVRSILL 321
Query: 1240 -PFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKN-----EKND----VTAANLDNG 1289
F + ++ E++ E+ GVKF ++ E N + + +G
Sbjct: 322 RGFDQ----QMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDG 377
Query: 1290 TT--IPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 1342
+ VI +G + + GV+L+ VV + +T V VYA GDI
Sbjct: 378 KKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTDDEQTTVSNVYAIGDI 434
|
| >3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus musculus} Length = 157 | Back alignment and structure |
|---|
Score = 78.5 bits (193), Expect = 8e-17
Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 19/92 (20%)
Query: 506 NIYAVGTKCSHYGAPLVKGSL----GDGRVRCPWHGACFNIATGDIEDFPGMDSLP---- 557
+A+ +C H G PL G + G + CPWH +ATG+ P
Sbjct: 49 EYHAMDIRCYHSGGPLHLGEIEDFNGQSCIVCPWHKYKITLATGEGLYQSINPKDPSAKP 108
Query: 558 ----------CYKVTIQNDDSVVVQARKDELK 579
+ V + N + + V K+ K
Sbjct: 109 KWCSKGVKQRIHTVKVDNGN-IYVTLSKEPFK 139
|
| >3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus musculus} Length = 157 | Back alignment and structure |
|---|
Score = 78.5 bits (193), Expect = 8e-17
Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 19/92 (20%)
Query: 977 NIYAVGTKCSHYGAPLVKGSL----GDGRVRCPWHGACFNIATGDIEDFPGMDSLP---- 1028
+A+ +C H G PL G + G + CPWH +ATG+ P
Sbjct: 49 EYHAMDIRCYHSGGPLHLGEIEDFNGQSCIVCPWHKYKITLATGEGLYQSINPKDPSAKP 108
Query: 1029 ----------CYKVTIQNDDSVVVQARKDELK 1050
+ V + N + + V K+ K
Sbjct: 109 KWCSKGVKQRIHTVKVDNGN-IYVTLSKEPFK 139
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 458 | Back alignment and structure |
|---|
Score = 83.7 bits (208), Expect = 9e-17
Identities = 50/226 (22%), Positives = 98/226 (43%), Gaps = 31/226 (13%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYL 166
K + + V+ G + D K++++ DG I + LATGSS + V
Sbjct: 107 KKHGVKVVHGWAKVLD----GKQVEV-DGQRIQCEHLLLATGSSSVELPMLPLGGPVI-- 159
Query: 167 RTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCA--SKVKSVTVVGRGAVPFQESLG 223
+ +A +AP P+ +VV+G +IG+E A+ ++V +VV +E +
Sbjct: 160 -SSTEA--LAPKALPQH-LVVVGGGYIGLELGIAYRKLGAQV---SVV-----EARERIL 207
Query: 224 ----KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 279
E+ + + + G+ + +V +E + + AD V+V +G
Sbjct: 208 PTYDSELTAPVAESLKKLGIALHLGHSVEGYENGCL--LANDGKGGQLRLEADRVLVAVG 265
Query: 280 TVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 323
T + +++N A+ ++E +T++ V+A GD+A P
Sbjct: 266 RRPRTKGFNLECLDLKMN-GAAIAIDERCQTSMHNVWAIGDVAGEP 310
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 458 | Back alignment and structure |
|---|
Score = 83.7 bits (208), Expect = 9e-17
Identities = 50/226 (22%), Positives = 98/226 (43%), Gaps = 31/226 (13%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYL 718
K + + V+ G + D K++++ DG I + LATGSS + V
Sbjct: 107 KKHGVKVVHGWAKVLD----GKQVEV-DGQRIQCEHLLLATGSSSVELPMLPLGGPVI-- 159
Query: 719 RTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCA--SKVKSVTVVGRGAVPFQESLG 775
+ +A +AP P+ +VV+G +IG+E A+ ++V +VV +E +
Sbjct: 160 -SSTEA--LAPKALPQH-LVVVGGGYIGLELGIAYRKLGAQV---SVV-----EARERIL 207
Query: 776 ----KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 831
E+ + + + G+ + +V +E + + AD V+V +G
Sbjct: 208 PTYDSELTAPVAESLKKLGIALHLGHSVEGYENGCL--LANDGKGGQLRLEADRVLVAVG 265
Query: 832 TVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 875
T + +++N A+ ++E +T++ V+A GD+A P
Sbjct: 266 RRPRTKGFNLECLDLKMN-GAAIAIDERCQTSMHNVWAIGDVAGEP 310
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 458 | Back alignment and structure |
|---|
Score = 83.7 bits (208), Expect = 9e-17
Identities = 50/226 (22%), Positives = 98/226 (43%), Gaps = 31/226 (13%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYL 1189
K + + V+ G + D K++++ DG I + LATGSS + V
Sbjct: 107 KKHGVKVVHGWAKVLD----GKQVEV-DGQRIQCEHLLLATGSSSVELPMLPLGGPVI-- 159
Query: 1190 RTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCA--SKVKSVTVVGRGAVPFQESLG 1246
+ +A +AP P+ +VV+G +IG+E A+ ++V +VV +E +
Sbjct: 160 -SSTEA--LAPKALPQH-LVVVGGGYIGLELGIAYRKLGAQV---SVV-----EARERIL 207
Query: 1247 ----KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 1302
E+ + + + G+ + +V +E + + AD V+V +G
Sbjct: 208 PTYDSELTAPVAESLKKLGIALHLGHSVEGYENGCL--LANDGKGGQLRLEADRVLVAVG 265
Query: 1303 TVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 1346
T + +++N A+ ++E +T++ V+A GD+A P
Sbjct: 266 RRPRTKGFNLECLDLKMN-GAAIAIDERCQTSMHNVWAIGDVAGEP 310
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* Length = 478 | Back alignment and structure |
|---|
Score = 83.7 bits (208), Expect = 1e-16
Identities = 50/246 (20%), Positives = 95/246 (38%), Gaps = 51/246 (20%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDG--------TSIDFTKIYLATGSSPRTISQA- 157
K N + KG D + ++ DG +D I +ATGS
Sbjct: 107 KKNKVTYYKGNGSFEDE--TKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFPGIE 164
Query: 158 -DGVNKV-----FYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCA---SKVKSV 208
D V L+ + P+ + +IG IG+E + + SKV
Sbjct: 165 IDEEKIVSSTGALSLKEI-----------PKR-LTIIGGGIIGLEMGSVYSRLGSKV--- 209
Query: 209 TVVGRGAVPFQESLG----KEVGERITKLFESKGVKFVMKANVSSFEKNEKN---DVTAA 261
TVV FQ +G EV + K + +G+ F + V S ++N+ ++
Sbjct: 210 TVV-----EFQPQIGASMDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVE 264
Query: 262 NLDNG--TTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGG 317
+ + A++++V +G L + G+E++ + +V+++ + P + G
Sbjct: 265 DTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVG 324
Query: 318 DIAYAP 323
D+ + P
Sbjct: 325 DVTFGP 330
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* Length = 478 | Back alignment and structure |
|---|
Score = 83.7 bits (208), Expect = 1e-16
Identities = 50/246 (20%), Positives = 95/246 (38%), Gaps = 51/246 (20%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDG--------TSIDFTKIYLATGSSPRTISQA- 709
K N + KG D + ++ DG +D I +ATGS
Sbjct: 107 KKNKVTYYKGNGSFEDE--TKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFPGIE 164
Query: 710 -DGVNKV-----FYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCA---SKVKSV 760
D V L+ + P+ + +IG IG+E + + SKV
Sbjct: 165 IDEEKIVSSTGALSLKEI-----------PKR-LTIIGGGIIGLEMGSVYSRLGSKV--- 209
Query: 761 TVVGRGAVPFQESLG----KEVGERITKLFESKGVKFVMKANVSSFEKNEKN---DVTAA 813
TVV FQ +G EV + K + +G+ F + V S ++N+ ++
Sbjct: 210 TVV-----EFQPQIGASMDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVE 264
Query: 814 NLDNG--TTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGG 869
+ + A++++V +G L + G+E++ + +V+++ + P + G
Sbjct: 265 DTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVG 324
Query: 870 DIAYAP 875
D+ + P
Sbjct: 325 DVTFGP 330
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* Length = 478 | Back alignment and structure |
|---|
Score = 83.7 bits (208), Expect = 1e-16
Identities = 50/246 (20%), Positives = 95/246 (38%), Gaps = 51/246 (20%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDG--------TSIDFTKIYLATGSSPRTISQA- 1180
K N + KG D + ++ DG +D I +ATGS
Sbjct: 107 KKNKVTYYKGNGSFEDE--TKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFPGIE 164
Query: 1181 -DGVNKV-----FYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCA---SKVKSV 1231
D V L+ + P+ + +IG IG+E + + SKV
Sbjct: 165 IDEEKIVSSTGALSLKEI-----------PKR-LTIIGGGIIGLEMGSVYSRLGSKV--- 209
Query: 1232 TVVGRGAVPFQESLG----KEVGERITKLFESKGVKFVMKANVSSFEKNEKN---DVTAA 1284
TVV FQ +G EV + K + +G+ F + V S ++N+ ++
Sbjct: 210 TVV-----EFQPQIGASMDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVE 264
Query: 1285 NLDNG--TTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGG 1340
+ + A++++V +G L + G+E++ + +V+++ + P + G
Sbjct: 265 DTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVG 324
Query: 1341 DIAYAP 1346
D+ + P
Sbjct: 325 DVTFGP 330
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* Length = 482 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 2e-16
Identities = 47/246 (19%), Positives = 85/246 (34%), Gaps = 51/246 (20%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDG------------TSIDFTKIYLATGSSPRTI 154
K + VI+G D + ++ L G + F +A GS +
Sbjct: 106 KSRKVDVIQGDGQFLDP--HHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVTKL 163
Query: 155 SQADGVNKVF------YLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCA--SKV 205
++ L+ V P +++IG IG+E + S++
Sbjct: 164 PFIPEDPRIIDSSGALALKEV-----------PGK-LLIIGGGIIGLEMGTVYSTLGSRL 211
Query: 206 KSVTVVGRGAVPFQESLG----KEVGERITKLFESKGVKFVMKANVSSFEKNEKN-DVTA 260
VV + L +++ + K E + ++ + E E VT
Sbjct: 212 ---DVV-----EMMDGLMQGADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTF 263
Query: 261 ANLDNGT-TIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGG 317
+ D V+V G N + + GV + + + V++ + TNVP +YA G
Sbjct: 264 EGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIG 323
Query: 318 DIAYAP 323
DI P
Sbjct: 324 DIVGQP 329
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* Length = 482 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 2e-16
Identities = 47/246 (19%), Positives = 85/246 (34%), Gaps = 51/246 (20%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDG------------TSIDFTKIYLATGSSPRTI 706
K + VI+G D + ++ L G + F +A GS +
Sbjct: 106 KSRKVDVIQGDGQFLDP--HHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVTKL 163
Query: 707 SQADGVNKVF------YLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCA--SKV 757
++ L+ V P +++IG IG+E + S++
Sbjct: 164 PFIPEDPRIIDSSGALALKEV-----------PGK-LLIIGGGIIGLEMGTVYSTLGSRL 211
Query: 758 KSVTVVGRGAVPFQESLG----KEVGERITKLFESKGVKFVMKANVSSFEKNEKN-DVTA 812
VV + L +++ + K E + ++ + E E VT
Sbjct: 212 ---DVV-----EMMDGLMQGADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTF 263
Query: 813 ANLDNGT-TIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGG 869
+ D V+V G N + + GV + + + V++ + TNVP +YA G
Sbjct: 264 EGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIG 323
Query: 870 DIAYAP 875
DI P
Sbjct: 324 DIVGQP 329
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* Length = 482 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 2e-16
Identities = 47/246 (19%), Positives = 85/246 (34%), Gaps = 51/246 (20%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDG------------TSIDFTKIYLATGSSPRTI 1177
K + VI+G D + ++ L G + F +A GS +
Sbjct: 106 KSRKVDVIQGDGQFLDP--HHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVTKL 163
Query: 1178 SQADGVNKVF------YLRTVEDANNIAPHITPESNVVVIGSSFIGME-AAAFCA--SKV 1228
++ L+ V P +++IG IG+E + S++
Sbjct: 164 PFIPEDPRIIDSSGALALKEV-----------PGK-LLIIGGGIIGLEMGTVYSTLGSRL 211
Query: 1229 KSVTVVGRGAVPFQESLG----KEVGERITKLFESKGVKFVMKANVSSFEKNEKN-DVTA 1283
VV + L +++ + K E + ++ + E E VT
Sbjct: 212 ---DVV-----EMMDGLMQGADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTF 263
Query: 1284 ANLDNGT-TIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGG 1340
+ D V+V G N + + GV + + + V++ + TNVP +YA G
Sbjct: 264 EGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIG 323
Query: 1341 DIAYAP 1346
DI P
Sbjct: 324 DIVGQP 329
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* Length = 483 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 4e-16
Identities = 54/234 (23%), Positives = 85/234 (36%), Gaps = 46/234 (19%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFT--KIYLATGSSPRTISQADGV---- 160
+D + I G DS + KL+ G T +A G PR G
Sbjct: 119 RDKKVEYINGLGSFVDS--HTLLAKLKSGERT-ITAQTFVIAVGGRPR-YPDIPGAVEYG 174
Query: 161 ---NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKS----VTVVGR 213
+ +F L P +V+G+ +IG+E CA +K TV+ R
Sbjct: 175 ITSDDLFSLDRE-----------PGK-TLVVGAGYIGLE----CAGFLKGLGYEPTVMVR 218
Query: 214 GAV--PFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTA----ANLDNGT 267
V F + ++ E + E +G+ F+ K S EK + + +
Sbjct: 219 SIVLRGFDQ----QMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEES 274
Query: 268 TIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 319
D V+ IG + L GV + + + V+ TNV +YA GDI
Sbjct: 275 EDVYDTVLWAIGRKGLVDDLNLPNAGVTVQ-KDKIPVDSQEATNVANIYAVGDI 327
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* Length = 483 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 4e-16
Identities = 54/234 (23%), Positives = 85/234 (36%), Gaps = 46/234 (19%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFT--KIYLATGSSPRTISQADGV---- 712
+D + I G DS + KL+ G T +A G PR G
Sbjct: 119 RDKKVEYINGLGSFVDS--HTLLAKLKSGERT-ITAQTFVIAVGGRPR-YPDIPGAVEYG 174
Query: 713 ---NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKS----VTVVGR 765
+ +F L P +V+G+ +IG+E CA +K TV+ R
Sbjct: 175 ITSDDLFSLDRE-----------PGK-TLVVGAGYIGLE----CAGFLKGLGYEPTVMVR 218
Query: 766 GAV--PFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTA----ANLDNGT 819
V F + ++ E + E +G+ F+ K S EK + + +
Sbjct: 219 SIVLRGFDQ----QMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEES 274
Query: 820 TIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 871
D V+ IG + L GV + + + V+ TNV +YA GDI
Sbjct: 275 EDVYDTVLWAIGRKGLVDDLNLPNAGVTVQ-KDKIPVDSQEATNVANIYAVGDI 327
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* Length = 483 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 4e-16
Identities = 54/234 (23%), Positives = 85/234 (36%), Gaps = 46/234 (19%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFT--KIYLATGSSPRTISQADGV---- 1183
+D + I G DS + KL+ G T +A G PR G
Sbjct: 119 RDKKVEYINGLGSFVDS--HTLLAKLKSGERT-ITAQTFVIAVGGRPR-YPDIPGAVEYG 174
Query: 1184 ---NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKS----VTVVGR 1236
+ +F L P +V+G+ +IG+E CA +K TV+ R
Sbjct: 175 ITSDDLFSLDRE-----------PGK-TLVVGAGYIGLE----CAGFLKGLGYEPTVMVR 218
Query: 1237 GAV--PFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTA----ANLDNGT 1290
V F + ++ E + E +G+ F+ K S EK + + +
Sbjct: 219 SIVLRGFDQ----QMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEES 274
Query: 1291 TIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 1342
D V+ IG + L GV + + + V+ TNV +YA GDI
Sbjct: 275 EDVYDTVLWAIGRKGLVDDLNLPNAGVTVQ-KDKIPVDSQEATNVANIYAVGDI 327
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} Length = 468 | Back alignment and structure |
|---|
Score = 81.4 bits (202), Expect = 6e-16
Identities = 51/234 (21%), Positives = 89/234 (38%), Gaps = 43/234 (18%)
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQA--DGVNK 162
K N + KG+ + + ++ DG ++ K +ATGS P + D
Sbjct: 104 KKNKVTYYKGEGSFETA--HSIRVNGLDGKQEMLETKKTIIATGSEPTELPFLPFDEKVV 161
Query: 163 V-----FYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCA---SKVKSVTVVGRG 214
+ L V P++ +VVIG IG+E + A ++V TVV
Sbjct: 162 LSSTGALALPRV-----------PKT-MVVIGGGVIGLELGSVWARLGAEV---TVV--- 203
Query: 215 AVPFQESLG----KEVGERITKLFESK-GVKFVMKANVSSFEKNEKN-DVTAANLDNGT- 267
F ++V + +KF+ V N + + +
Sbjct: 204 --EFAPRCAPTLDEDVTNALVGALAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRE 261
Query: 268 TIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 319
T+ + ++V +G T L D V N + V + ++ ET++P VYA GD+
Sbjct: 262 TVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHFETSIPDVYAIGDV 315
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} Length = 468 | Back alignment and structure |
|---|
Score = 81.4 bits (202), Expect = 6e-16
Identities = 51/234 (21%), Positives = 89/234 (38%), Gaps = 43/234 (18%)
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQA--DGVNK 714
K N + KG+ + + ++ DG ++ K +ATGS P + D
Sbjct: 104 KKNKVTYYKGEGSFETA--HSIRVNGLDGKQEMLETKKTIIATGSEPTELPFLPFDEKVV 161
Query: 715 V-----FYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCA---SKVKSVTVVGRG 766
+ L V P++ +VVIG IG+E + A ++V TVV
Sbjct: 162 LSSTGALALPRV-----------PKT-MVVIGGGVIGLELGSVWARLGAEV---TVV--- 203
Query: 767 AVPFQESLG----KEVGERITKLFESK-GVKFVMKANVSSFEKNEKN-DVTAANLDNGT- 819
F ++V + +KF+ V N + + +
Sbjct: 204 --EFAPRCAPTLDEDVTNALVGALAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRE 261
Query: 820 TIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 871
T+ + ++V +G T L D V N + V + ++ ET++P VYA GD+
Sbjct: 262 TVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHFETSIPDVYAIGDV 315
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} Length = 468 | Back alignment and structure |
|---|
Score = 81.4 bits (202), Expect = 6e-16
Identities = 51/234 (21%), Positives = 89/234 (38%), Gaps = 43/234 (18%)
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQA--DGVNK 1185
K N + KG+ + + ++ DG ++ K +ATGS P + D
Sbjct: 104 KKNKVTYYKGEGSFETA--HSIRVNGLDGKQEMLETKKTIIATGSEPTELPFLPFDEKVV 161
Query: 1186 V-----FYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCA---SKVKSVTVVGRG 1237
+ L V P++ +VVIG IG+E + A ++V TVV
Sbjct: 162 LSSTGALALPRV-----------PKT-MVVIGGGVIGLELGSVWARLGAEV---TVV--- 203
Query: 1238 AVPFQESLG----KEVGERITKLFESK-GVKFVMKANVSSFEKNEKN-DVTAANLDNGT- 1290
F ++V + +KF+ V N + + +
Sbjct: 204 --EFAPRCAPTLDEDVTNALVGALAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRE 261
Query: 1291 TIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 1342
T+ + ++V +G T L D V N + V + ++ ET++P VYA GD+
Sbjct: 262 TVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHFETSIPDVYAIGDV 315
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} Length = 360 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 3e-14
Identities = 48/215 (22%), Positives = 88/215 (40%), Gaps = 22/215 (10%)
Query: 120 ISDSELNEKKIKLQDGTSIDFTKIYLATGS---SPRTISQADGVNK-----VFYLRTVED 171
+ + + + G + +A G PR + Q ++ V+Y V+
Sbjct: 100 YTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYY--AVKS 157
Query: 172 ANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERIT 231
+ VV++G ++ SVT+V RG FQ + +
Sbjct: 158 VEDFKGK-----RVVIVGGGDSALDWTVGLIKNAASVTLVHRGHE-FQGH--GKTAHEVE 209
Query: 232 KLFESKGVKFVMKANVSSFEKNEK--NDVTAANLDNGT-TIPADLVIVGIGTVLNTNYLD 288
+ + + ++ V+S E++ V + D T+ AD +++ IG N L
Sbjct: 210 RARANGTIDVYLETEVASIEESNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLA 269
Query: 289 GKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 323
+EL A+VV+ +++T+V G+YA GDIAY P
Sbjct: 270 RWDLELYE-NALVVDSHMKTSVDGLYAAGDIAYYP 303
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} Length = 360 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 3e-14
Identities = 48/215 (22%), Positives = 88/215 (40%), Gaps = 22/215 (10%)
Query: 672 ISDSELNEKKIKLQDGTSIDFTKIYLATGS---SPRTISQADGVNK-----VFYLRTVED 723
+ + + + G + +A G PR + Q ++ V+Y V+
Sbjct: 100 YTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYY--AVKS 157
Query: 724 ANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERIT 783
+ VV++G ++ SVT+V RG FQ + +
Sbjct: 158 VEDFKGK-----RVVIVGGGDSALDWTVGLIKNAASVTLVHRGHE-FQGH--GKTAHEVE 209
Query: 784 KLFESKGVKFVMKANVSSFEKNEK--NDVTAANLDNGT-TIPADLVIVGIGTVLNTNYLD 840
+ + + ++ V+S E++ V + D T+ AD +++ IG N L
Sbjct: 210 RARANGTIDVYLETEVASIEESNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLA 269
Query: 841 GKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 875
+EL A+VV+ +++T+V G+YA GDIAY P
Sbjct: 270 RWDLELYE-NALVVDSHMKTSVDGLYAAGDIAYYP 303
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} Length = 360 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 3e-14
Identities = 48/215 (22%), Positives = 88/215 (40%), Gaps = 22/215 (10%)
Query: 1143 ISDSELNEKKIKLQDGTSIDFTKIYLATGS---SPRTISQADGVNK-----VFYLRTVED 1194
+ + + + G + +A G PR + Q ++ V+Y V+
Sbjct: 100 YTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYY--AVKS 157
Query: 1195 ANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERIT 1254
+ VV++G ++ SVT+V RG FQ + +
Sbjct: 158 VEDFKGK-----RVVIVGGGDSALDWTVGLIKNAASVTLVHRGHE-FQGH--GKTAHEVE 209
Query: 1255 KLFESKGVKFVMKANVSSFEKNEK--NDVTAANLDNGT-TIPADLVIVGIGTVLNTNYLD 1311
+ + + ++ V+S E++ V + D T+ AD +++ IG N L
Sbjct: 210 RARANGTIDVYLETEVASIEESNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLA 269
Query: 1312 GKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 1346
+EL A+VV+ +++T+V G+YA GDIAY P
Sbjct: 270 RWDLELYE-NALVVDSHMKTSVDGLYAAGDIAYYP 303
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} Length = 319 | Back alignment and structure |
|---|
Score = 73.3 bits (181), Expect = 7e-14
Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 17/148 (11%)
Query: 184 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESL--GKEVGERITKLFESKGVKF 241
VV IG G AA + VK+VT++ + + + + +
Sbjct: 157 RVVTIGGGNSGAIAAISMSEYVKNVTIIEYM-----PKYMCENAYVQE----IKKRNIPY 207
Query: 242 VMKANVSSFEKNEKNDVTAANLDNGTT-----IPADLVIVGIGTVLNTNYLDGKGVELNG 296
+M A V+ + K VT + TT I D V + +G + T++L GV+L+
Sbjct: 208 IMNAQVTEIVGDGKK-VTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLKDSGVKLDE 266
Query: 297 QKAVVVNEYLETNVPGVYAGGDIAYAPL 324
+ +VV+ T+VPGVYA GD+
Sbjct: 267 RGYIVVDSRQRTSVPGVYAAGDVTSGNF 294
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} Length = 319 | Back alignment and structure |
|---|
Score = 73.3 bits (181), Expect = 7e-14
Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 17/148 (11%)
Query: 736 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESL--GKEVGERITKLFESKGVKF 793
VV IG G AA + VK+VT++ + + + + +
Sbjct: 157 RVVTIGGGNSGAIAAISMSEYVKNVTIIEYM-----PKYMCENAYVQE----IKKRNIPY 207
Query: 794 VMKANVSSFEKNEKNDVTAANLDNGTT-----IPADLVIVGIGTVLNTNYLDGKGVELNG 848
+M A V+ + K VT + TT I D V + +G + T++L GV+L+
Sbjct: 208 IMNAQVTEIVGDGKK-VTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLKDSGVKLDE 266
Query: 849 QKAVVVNEYLETNVPGVYAGGDIAYAPL 876
+ +VV+ T+VPGVYA GD+
Sbjct: 267 RGYIVVDSRQRTSVPGVYAAGDVTSGNF 294
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} Length = 319 | Back alignment and structure |
|---|
Score = 73.3 bits (181), Expect = 7e-14
Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 17/148 (11%)
Query: 1207 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESL--GKEVGERITKLFESKGVKF 1264
VV IG G AA + VK+VT++ + + + + +
Sbjct: 157 RVVTIGGGNSGAIAAISMSEYVKNVTIIEYM-----PKYMCENAYVQE----IKKRNIPY 207
Query: 1265 VMKANVSSFEKNEKNDVTAANLDNGTT-----IPADLVIVGIGTVLNTNYLDGKGVELNG 1319
+M A V+ + K VT + TT I D V + +G + T++L GV+L+
Sbjct: 208 IMNAQVTEIVGDGKK-VTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLKDSGVKLDE 266
Query: 1320 QKAVVVNEYLETNVPGVYAGGDIAYAPL 1347
+ +VV+ T+VPGVYA GD+
Sbjct: 267 RGYIVVDSRQRTSVPGVYAAGDVTSGNF 294
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} Length = 335 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 2e-13
Identities = 40/212 (18%), Positives = 79/212 (37%), Gaps = 29/212 (13%)
Query: 126 NEKKIKLQDGTSIDFTKIYLATGS---SPRTISQADGVNK-----VFYLRTVEDANNIAP 177
+ K+ G + + +A G PR I A G + V+Y V+
Sbjct: 96 DLFKVTTSQGNAYTAKAVIIAAGVGAFEPRRIG-APGEREFEGRGVYY--AVKSKAEFQG 152
Query: 178 HITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF---QESLGKEVGERITKLF 234
V+++G ++ A + +T++ R F + S+ + + K
Sbjct: 153 K-----RVLIVGGGDSAVDWALNLLDTARRITLIHRRPQ-FRAHEASV-----KELMKAH 201
Query: 235 ESKGVKFVMKANVSSFEKNEK-NDVTAANLDNGTT--IPADLVIVGIGTVLNTNYLDGKG 291
E ++ + + E +E+ + + D V++ G + L G
Sbjct: 202 EEGRLEVLTPYELRRVEGDERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGPLANWG 261
Query: 292 VELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 323
+ L + + V+ + T++PGVYA GDI P
Sbjct: 262 LALE-KNKIKVDTTMATSIPGVYACGDIVTYP 292
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} Length = 335 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 2e-13
Identities = 40/212 (18%), Positives = 79/212 (37%), Gaps = 29/212 (13%)
Query: 678 NEKKIKLQDGTSIDFTKIYLATGS---SPRTISQADGVNK-----VFYLRTVEDANNIAP 729
+ K+ G + + +A G PR I A G + V+Y V+
Sbjct: 96 DLFKVTTSQGNAYTAKAVIIAAGVGAFEPRRIG-APGEREFEGRGVYY--AVKSKAEFQG 152
Query: 730 HITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF---QESLGKEVGERITKLF 786
V+++G ++ A + +T++ R F + S+ + + K
Sbjct: 153 K-----RVLIVGGGDSAVDWALNLLDTARRITLIHRRPQ-FRAHEASV-----KELMKAH 201
Query: 787 ESKGVKFVMKANVSSFEKNEK-NDVTAANLDNGTT--IPADLVIVGIGTVLNTNYLDGKG 843
E ++ + + E +E+ + + D V++ G + L G
Sbjct: 202 EEGRLEVLTPYELRRVEGDERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGPLANWG 261
Query: 844 VELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 875
+ L + + V+ + T++PGVYA GDI P
Sbjct: 262 LALE-KNKIKVDTTMATSIPGVYACGDIVTYP 292
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} Length = 335 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 2e-13
Identities = 40/212 (18%), Positives = 79/212 (37%), Gaps = 29/212 (13%)
Query: 1149 NEKKIKLQDGTSIDFTKIYLATGS---SPRTISQADGVNK-----VFYLRTVEDANNIAP 1200
+ K+ G + + +A G PR I A G + V+Y V+
Sbjct: 96 DLFKVTTSQGNAYTAKAVIIAAGVGAFEPRRIG-APGEREFEGRGVYY--AVKSKAEFQG 152
Query: 1201 HITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF---QESLGKEVGERITKLF 1257
V+++G ++ A + +T++ R F + S+ + + K
Sbjct: 153 K-----RVLIVGGGDSAVDWALNLLDTARRITLIHRRPQ-FRAHEASV-----KELMKAH 201
Query: 1258 ESKGVKFVMKANVSSFEKNEK-NDVTAANLDNGTT--IPADLVIVGIGTVLNTNYLDGKG 1314
E ++ + + E +E+ + + D V++ G + L G
Sbjct: 202 EEGRLEVLTPYELRRVEGDERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGPLANWG 261
Query: 1315 VELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 1346
+ L + + V+ + T++PGVYA GDI P
Sbjct: 262 LALE-KNKIKVDTTMATSIPGVYACGDIVTYP 292
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* Length = 332 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 2e-13
Identities = 40/220 (18%), Positives = 82/220 (37%), Gaps = 28/220 (12%)
Query: 116 GKKIISDSELNEKKIKLQDGTSIDFTK-IYLATGS---SPRTISQADGVNK-----VFYL 166
+ + S + + KL ++K + + G+ PR + + + + + Y
Sbjct: 87 EQAVESVEKQADGVFKLVTNEETHYSKTVIITAGNGAFKPRKL-ELENAEQYEGKNLHY- 144
Query: 167 RTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEV 226
V+D A V ++G ++ A K V+++ R F+ E
Sbjct: 145 -FVDDLQKFAGR-----RVAILGGGDSAVDWALMLEPIAKEVSIIHRRDK-FR---AHE- 193
Query: 227 GERITKLFESKGVKFVMKANVSSFEKNEK-NDVTAANLDNG--TTIPADLVIVGIGTVLN 283
+ L SK V + + +K + + + D +IV G V +
Sbjct: 194 -HSVENLHASK-VNVLTPFVPAELIGEDKIEQLVLEEVKGDRKEILEIDDLIVNYGFVSS 251
Query: 284 TNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 323
+ G+++ + ++VV +ETN+ G +A GDI
Sbjct: 252 LGPIKNWGLDIE-KNSIVVKSTMETNIEGFFAAGDICTYE 290
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* Length = 332 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 2e-13
Identities = 40/220 (18%), Positives = 82/220 (37%), Gaps = 28/220 (12%)
Query: 668 GKKIISDSELNEKKIKLQDGTSIDFTK-IYLATGS---SPRTISQADGVNK-----VFYL 718
+ + S + + KL ++K + + G+ PR + + + + + Y
Sbjct: 87 EQAVESVEKQADGVFKLVTNEETHYSKTVIITAGNGAFKPRKL-ELENAEQYEGKNLHY- 144
Query: 719 RTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEV 778
V+D A V ++G ++ A K V+++ R F+ E
Sbjct: 145 -FVDDLQKFAGR-----RVAILGGGDSAVDWALMLEPIAKEVSIIHRRDK-FR---AHE- 193
Query: 779 GERITKLFESKGVKFVMKANVSSFEKNEK-NDVTAANLDNG--TTIPADLVIVGIGTVLN 835
+ L SK V + + +K + + + D +IV G V +
Sbjct: 194 -HSVENLHASK-VNVLTPFVPAELIGEDKIEQLVLEEVKGDRKEILEIDDLIVNYGFVSS 251
Query: 836 TNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 875
+ G+++ + ++VV +ETN+ G +A GDI
Sbjct: 252 LGPIKNWGLDIE-KNSIVVKSTMETNIEGFFAAGDICTYE 290
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* Length = 332 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 2e-13
Identities = 40/220 (18%), Positives = 82/220 (37%), Gaps = 28/220 (12%)
Query: 1139 GKKIISDSELNEKKIKLQDGTSIDFTK-IYLATGS---SPRTISQADGVNK-----VFYL 1189
+ + S + + KL ++K + + G+ PR + + + + + Y
Sbjct: 87 EQAVESVEKQADGVFKLVTNEETHYSKTVIITAGNGAFKPRKL-ELENAEQYEGKNLHY- 144
Query: 1190 RTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEV 1249
V+D A V ++G ++ A K V+++ R F+ E
Sbjct: 145 -FVDDLQKFAGR-----RVAILGGGDSAVDWALMLEPIAKEVSIIHRRDK-FR---AHE- 193
Query: 1250 GERITKLFESKGVKFVMKANVSSFEKNEK-NDVTAANLDNG--TTIPADLVIVGIGTVLN 1306
+ L SK V + + +K + + + D +IV G V +
Sbjct: 194 -HSVENLHASK-VNVLTPFVPAELIGEDKIEQLVLEEVKGDRKEILEIDDLIVNYGFVSS 251
Query: 1307 TNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 1346
+ G+++ + ++VV +ETN+ G +A GDI
Sbjct: 252 LGPIKNWGLDIE-KNSIVVKSTMETNIEGFFAAGDICTYE 290
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A Length = 521 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 4e-13
Identities = 65/315 (20%), Positives = 117/315 (37%), Gaps = 73/315 (23%)
Query: 47 IVVGGGPSGATC-VETLRQN--------GFTGKLYFITD-ENFLPYDRV---KLSKQLDI 93
++VG GP+GA V + R+ F G++ D EN++ + KL+ L
Sbjct: 216 LIVGSGPAGAAAAVYSARKGIRTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGALKA 275
Query: 94 KADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRT 153
++ D K + + +E +I+ G + I +ATG+ R
Sbjct: 276 HV-------SDYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRN 328
Query: 154 ISQADGV-------NK-V---------FYLRTVEDANNIAPHITPESNVVVIGSSFIGME 196
+ V K V + V VIG G+E
Sbjct: 329 M----NVPGEDQYRTKGVTYCPHCDGPLF---------------KGKRVAVIGGGNSGVE 369
Query: 197 AAAFCASKVKSVTVVGRGAVPFQESLGKEVGERI--TKLFESKGVKFVMKANVSSFEKNE 254
AA A V+ VT++ + +++ K+ K V ++ A + K +
Sbjct: 370 AAIDLAGIVEHVTLLEFA-----PEMK---ADQVLQDKVRSLKNVDIILNAQTTEV-KGD 420
Query: 255 KNDVTAANLDNGTT-----IPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETN 309
+ V + + + + V IG + NT++L+G +E N ++++ ET+
Sbjct: 421 GSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEGA-LERNRMGEIIIDAKCETS 479
Query: 310 VPGVYAGGDIAYAPL 324
V GV+A GD P
Sbjct: 480 VKGVFAAGDCTTVPY 494
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A Length = 521 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 4e-13
Identities = 65/315 (20%), Positives = 117/315 (37%), Gaps = 73/315 (23%)
Query: 599 IVVGGGPSGATC-VETLRQN--------GFTGKLYFITD-ENFLPYDRV---KLSKQLDI 645
++VG GP+GA V + R+ F G++ D EN++ + KL+ L
Sbjct: 216 LIVGSGPAGAAAAVYSARKGIRTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGALKA 275
Query: 646 KADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRT 705
++ D K + + +E +I+ G + I +ATG+ R
Sbjct: 276 HV-------SDYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRN 328
Query: 706 ISQADGV-------NK-V---------FYLRTVEDANNIAPHITPESNVVVIGSSFIGME 748
+ V K V + V VIG G+E
Sbjct: 329 M----NVPGEDQYRTKGVTYCPHCDGPLF---------------KGKRVAVIGGGNSGVE 369
Query: 749 AAAFCASKVKSVTVVGRGAVPFQESLGKEVGERI--TKLFESKGVKFVMKANVSSFEKNE 806
AA A V+ VT++ + +++ K+ K V ++ A + K +
Sbjct: 370 AAIDLAGIVEHVTLLEFA-----PEMK---ADQVLQDKVRSLKNVDIILNAQTTEV-KGD 420
Query: 807 KNDVTAANLDNGTT-----IPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETN 861
+ V + + + + V IG + NT++L+G +E N ++++ ET+
Sbjct: 421 GSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEGA-LERNRMGEIIIDAKCETS 479
Query: 862 VPGVYAGGDIAYAPL 876
V GV+A GD P
Sbjct: 480 VKGVFAAGDCTTVPY 494
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A Length = 521 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 4e-13
Identities = 65/315 (20%), Positives = 117/315 (37%), Gaps = 73/315 (23%)
Query: 1070 IVVGGGPSGATC-VETLRQN--------GFTGKLYFITD-ENFLPYDRV---KLSKQLDI 1116
++VG GP+GA V + R+ F G++ D EN++ + KL+ L
Sbjct: 216 LIVGSGPAGAAAAVYSARKGIRTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGALKA 275
Query: 1117 KADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRT 1176
++ D K + + +E +I+ G + I +ATG+ R
Sbjct: 276 HV-------SDYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRN 328
Query: 1177 ISQADGV-------NK-V---------FYLRTVEDANNIAPHITPESNVVVIGSSFIGME 1219
+ V K V + V VIG G+E
Sbjct: 329 M----NVPGEDQYRTKGVTYCPHCDGPLF---------------KGKRVAVIGGGNSGVE 369
Query: 1220 AAAFCASKVKSVTVVGRGAVPFQESLGKEVGERI--TKLFESKGVKFVMKANVSSFEKNE 1277
AA A V+ VT++ + +++ K+ K V ++ A + K +
Sbjct: 370 AAIDLAGIVEHVTLLEFA-----PEMK---ADQVLQDKVRSLKNVDIILNAQTTEV-KGD 420
Query: 1278 KNDVTAANLDNGTT-----IPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETN 1332
+ V + + + + V IG + NT++L+G +E N ++++ ET+
Sbjct: 421 GSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEGA-LERNRMGEIIIDAKCETS 479
Query: 1333 VPGVYAGGDIAYAPL 1347
V GV+A GD P
Sbjct: 480 VKGVFAAGDCTTVPY 494
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} Length = 297 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 2e-12
Identities = 22/139 (15%), Positives = 47/139 (33%), Gaps = 18/139 (12%)
Query: 185 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMK 244
+ VI +S + + A ++ E L ++GV V
Sbjct: 144 IGVIAASPMAIHHALMLPDWGETTFFTNGIV---------EPDADQHALLAARGV-RVET 193
Query: 245 ANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKA---VV 301
+ + DV L +G +I + + ++++ G + +V
Sbjct: 194 TRIREIAGHA--DVV---LADGRSIALAGLFTQPKLRITVDWIEKLGCAVEEGPMGSTIV 248
Query: 302 VNEYLETNVPGVYAGGDIA 320
+ +T G++A GD+A
Sbjct: 249 TDPMKQTTARGIFACGDVA 267
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} Length = 297 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 2e-12
Identities = 22/139 (15%), Positives = 47/139 (33%), Gaps = 18/139 (12%)
Query: 737 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMK 796
+ VI +S + + A ++ E L ++GV V
Sbjct: 144 IGVIAASPMAIHHALMLPDWGETTFFTNGIV---------EPDADQHALLAARGV-RVET 193
Query: 797 ANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKA---VV 853
+ + DV L +G +I + + ++++ G + +V
Sbjct: 194 TRIREIAGHA--DVV---LADGRSIALAGLFTQPKLRITVDWIEKLGCAVEEGPMGSTIV 248
Query: 854 VNEYLETNVPGVYAGGDIA 872
+ +T G++A GD+A
Sbjct: 249 TDPMKQTTARGIFACGDVA 267
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} Length = 297 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 2e-12
Identities = 22/139 (15%), Positives = 47/139 (33%), Gaps = 18/139 (12%)
Query: 1208 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMK 1267
+ VI +S + + A ++ E L ++GV V
Sbjct: 144 IGVIAASPMAIHHALMLPDWGETTFFTNGIV---------EPDADQHALLAARGV-RVET 193
Query: 1268 ANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKA---VV 1324
+ + DV L +G +I + + ++++ G + +V
Sbjct: 194 TRIREIAGHA--DVV---LADGRSIALAGLFTQPKLRITVDWIEKLGCAVEEGPMGSTIV 248
Query: 1325 VNEYLETNVPGVYAGGDIA 1343
+ +T G++A GD+A
Sbjct: 249 TDPMKQTTARGIFACGDVA 267
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025 | Back alignment and structure |
|---|
Score = 69.8 bits (171), Expect = 5e-12
Identities = 62/333 (18%), Positives = 113/333 (33%), Gaps = 101/333 (30%)
Query: 48 VVGGGPSGATCVETLRQNGFT------------GKL-YFITDENF-LPYD----RVKLSK 89
++G GP+ +C L + G++ G I F LPYD ++L K
Sbjct: 192 LLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIP--QFRLPYDVVNFEIELMK 249
Query: 90 QLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATG- 148
L +K + + I+ + L E+ + ++ G
Sbjct: 250 DLGVK----------IICGKSL----SENEITLNTLKEE----------GYKAAFIGIGL 285
Query: 149 ------SSPRTISQADGV-NKVFYLRTV------EDANNIAPHITPESNVVVIGSSFIGM 195
+ ++Q G +L V +P + V+V+G+ G
Sbjct: 286 PEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGA---GD 342
Query: 196 EA--AAFCASKV--KSVTVVGRG------AVPFQESLGKEVGERITKLFESKGVKFVMKA 245
A A A + + V +V R AVP +EV +L + + +F+
Sbjct: 343 TAFDCATSALRCGARRVFLVFRKGFVNIRAVP------EEV-----ELAKEEKCEFLPFL 391
Query: 246 NVSSFEKNEKNDVTAANL------DNG---------TTIPADLVIVGIGTVLNTNYL--D 288
+ + + A + G + AD+VI G+VL +
Sbjct: 392 SPRKVI-VKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEA 450
Query: 289 GKGVELNGQKAVVVNEY-LETNVPGVYAGGDIA 320
++ N V+ ++T+ P V+AGGDI
Sbjct: 451 LSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIV 483
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025 | Back alignment and structure |
|---|
Score = 69.8 bits (171), Expect = 5e-12
Identities = 62/333 (18%), Positives = 113/333 (33%), Gaps = 101/333 (30%)
Query: 600 VVGGGPSGATCVETLRQNGFT------------GKL-YFITDENF-LPYD----RVKLSK 641
++G GP+ +C L + G++ G I F LPYD ++L K
Sbjct: 192 LLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIP--QFRLPYDVVNFEIELMK 249
Query: 642 QLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATG- 700
L +K + + I+ + L E+ + ++ G
Sbjct: 250 DLGVK----------IICGKSL----SENEITLNTLKEE----------GYKAAFIGIGL 285
Query: 701 ------SSPRTISQADGV-NKVFYLRTV------EDANNIAPHITPESNVVVIGSSFIGM 747
+ ++Q G +L V +P + V+V+G+ G
Sbjct: 286 PEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGA---GD 342
Query: 748 EA--AAFCASKV--KSVTVVGRG------AVPFQESLGKEVGERITKLFESKGVKFVMKA 797
A A A + + V +V R AVP +EV +L + + +F+
Sbjct: 343 TAFDCATSALRCGARRVFLVFRKGFVNIRAVP------EEV-----ELAKEEKCEFLPFL 391
Query: 798 NVSSFEKNEKNDVTAANL------DNG---------TTIPADLVIVGIGTVLNTNYL--D 840
+ + + A + G + AD+VI G+VL +
Sbjct: 392 SPRKVI-VKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEA 450
Query: 841 GKGVELNGQKAVVVNEY-LETNVPGVYAGGDIA 872
++ N V+ ++T+ P V+AGGDI
Sbjct: 451 LSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIV 483
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025 | Back alignment and structure |
|---|
Score = 69.8 bits (171), Expect = 5e-12
Identities = 62/333 (18%), Positives = 113/333 (33%), Gaps = 101/333 (30%)
Query: 1071 VVGGGPSGATCVETLRQNGFT------------GKL-YFITDENF-LPYD----RVKLSK 1112
++G GP+ +C L + G++ G I F LPYD ++L K
Sbjct: 192 LLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIP--QFRLPYDVVNFEIELMK 249
Query: 1113 QLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATG- 1171
L +K + + I+ + L E+ + ++ G
Sbjct: 250 DLGVK----------IICGKSL----SENEITLNTLKEE----------GYKAAFIGIGL 285
Query: 1172 ------SSPRTISQADGV-NKVFYLRTV------EDANNIAPHITPESNVVVIGSSFIGM 1218
+ ++Q G +L V +P + V+V+G+ G
Sbjct: 286 PEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGA---GD 342
Query: 1219 EA--AAFCASKV--KSVTVVGRG------AVPFQESLGKEVGERITKLFESKGVKFVMKA 1268
A A A + + V +V R AVP +EV +L + + +F+
Sbjct: 343 TAFDCATSALRCGARRVFLVFRKGFVNIRAVP------EEV-----ELAKEEKCEFLPFL 391
Query: 1269 NVSSFEKNEKNDVTAANL------DNG---------TTIPADLVIVGIGTVLNTNYL--D 1311
+ + + A + G + AD+VI G+VL +
Sbjct: 392 SPRKVI-VKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEA 450
Query: 1312 GKGVELNGQKAVVVNEY-LETNVPGVYAGGDIA 1343
++ N V+ ++T+ P V+AGGDI
Sbjct: 451 LSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIV 483
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 Length = 310 | Back alignment and structure |
|---|
Score = 67.1 bits (165), Expect = 8e-12
Identities = 71/323 (21%), Positives = 117/323 (36%), Gaps = 89/323 (27%)
Query: 47 IVVGGGPSGAT-CVETLRQN--------GFTGKLYFITD-ENFLPYDRV---KLSKQLDI 93
++VG GP+GA + + R+ F G++ D EN++ + KL+ L +
Sbjct: 5 LIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKV 64
Query: 94 KADSILLRTEEFYKDNDIHVIKGKKIISDSELNE----KKIKLQDGTSIDFTKIYLATGS 149
+E+ D+ VI + +I+ G + I +ATG+
Sbjct: 65 HV-------DEY----DVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGA 113
Query: 150 SPRTIS-------QADGV------------NKVFYLRTVEDANNIAPHITPESNVVVIGS 190
R ++ + GV K V VIG
Sbjct: 114 KWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGK---------------------RVAVIGG 152
Query: 191 SFIGMEAAAFCASKVKSVTVVGRG----AVPFQESLGKEVGERITKLFESKGVKFVMKAN 246
G+EAA A V+ VT++ A + L KL K V ++ A
Sbjct: 153 GNSGVEAAIDLAGIVEHVTLLEFAPEMKA---DQVL-------QDKLRSLKNVDIILNAQ 202
Query: 247 VSSFEKNEKNDVTAANLDNGTT-----IPADLVIVGIGTVLNTNYLDGKGVELNGQKAVV 301
+ + + V + + I + V IG + NTN+L+G VE N ++
Sbjct: 203 TTEVKGDGSK-VVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGA-VERNRMGEII 260
Query: 302 VNEYLETNVPGVYAGGDIAYAPL 324
++ ETNV GV+A GD P
Sbjct: 261 IDAKCETNVKGVFAAGDCTTVPY 283
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 Length = 310 | Back alignment and structure |
|---|
Score = 67.1 bits (165), Expect = 8e-12
Identities = 71/323 (21%), Positives = 117/323 (36%), Gaps = 89/323 (27%)
Query: 599 IVVGGGPSGAT-CVETLRQN--------GFTGKLYFITD-ENFLPYDRV---KLSKQLDI 645
++VG GP+GA + + R+ F G++ D EN++ + KL+ L +
Sbjct: 5 LIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKV 64
Query: 646 KADSILLRTEEFYKDNDIHVIKGKKIISDSELNE----KKIKLQDGTSIDFTKIYLATGS 701
+E+ D+ VI + +I+ G + I +ATG+
Sbjct: 65 HV-------DEY----DVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGA 113
Query: 702 SPRTIS-------QADGV------------NKVFYLRTVEDANNIAPHITPESNVVVIGS 742
R ++ + GV K V VIG
Sbjct: 114 KWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGK---------------------RVAVIGG 152
Query: 743 SFIGMEAAAFCASKVKSVTVVGRG----AVPFQESLGKEVGERITKLFESKGVKFVMKAN 798
G+EAA A V+ VT++ A + L KL K V ++ A
Sbjct: 153 GNSGVEAAIDLAGIVEHVTLLEFAPEMKA---DQVL-------QDKLRSLKNVDIILNAQ 202
Query: 799 VSSFEKNEKNDVTAANLDNGTT-----IPADLVIVGIGTVLNTNYLDGKGVELNGQKAVV 853
+ + + V + + I + V IG + NTN+L+G VE N ++
Sbjct: 203 TTEVKGDGSK-VVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGA-VERNRMGEII 260
Query: 854 VNEYLETNVPGVYAGGDIAYAPL 876
++ ETNV GV+A GD P
Sbjct: 261 IDAKCETNVKGVFAAGDCTTVPY 283
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 Length = 310 | Back alignment and structure |
|---|
Score = 67.1 bits (165), Expect = 8e-12
Identities = 71/323 (21%), Positives = 117/323 (36%), Gaps = 89/323 (27%)
Query: 1070 IVVGGGPSGAT-CVETLRQN--------GFTGKLYFITD-ENFLPYDRV---KLSKQLDI 1116
++VG GP+GA + + R+ F G++ D EN++ + KL+ L +
Sbjct: 5 LIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKV 64
Query: 1117 KADSILLRTEEFYKDNDIHVIKGKKIISDSELNE----KKIKLQDGTSIDFTKIYLATGS 1172
+E+ D+ VI + +I+ G + I +ATG+
Sbjct: 65 HV-------DEY----DVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGA 113
Query: 1173 SPRTIS-------QADGV------------NKVFYLRTVEDANNIAPHITPESNVVVIGS 1213
R ++ + GV K V VIG
Sbjct: 114 KWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGK---------------------RVAVIGG 152
Query: 1214 SFIGMEAAAFCASKVKSVTVVGRG----AVPFQESLGKEVGERITKLFESKGVKFVMKAN 1269
G+EAA A V+ VT++ A + L KL K V ++ A
Sbjct: 153 GNSGVEAAIDLAGIVEHVTLLEFAPEMKA---DQVL-------QDKLRSLKNVDIILNAQ 202
Query: 1270 VSSFEKNEKNDVTAANLDNGTT-----IPADLVIVGIGTVLNTNYLDGKGVELNGQKAVV 1324
+ + + V + + I + V IG + NTN+L+G VE N ++
Sbjct: 203 TTEVKGDGSK-VVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGA-VERNRMGEII 260
Query: 1325 VNEYLETNVPGVYAGGDIAYAPL 1347
++ ETNV GV+A GD P
Sbjct: 261 IDAKCETNVKGVFAAGDCTTVPY 283
|
| >3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3 Length = 119 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 9e-12
Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 9/87 (10%)
Query: 973 FAERNIYAVGTKCSHYGAP-LVKGSLGDGR----VRCPWHGACFNIATGDIEDFPGMDSL 1027
+ +YAV A + +G +GD V P + F++ +G + L
Sbjct: 35 IPDSGVYAVQDWDPIGKAYVMSRGIVGDINGEMCVASPLYKQHFSLKSGQCLEDEAH-CL 93
Query: 1028 PCYKVTIQNDDSVVVQARKDELKNKKR 1054
++VT+ ++ V EL++
Sbjct: 94 KTWRVTVDDNQ---VCYLAKELEHHHH 117
|
| >3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3 Length = 119 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 3e-11
Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 9/82 (10%)
Query: 507 IYAVGTKCSHYGAP-LVKGSLGDGR----VRCPWHGACFNIATGDIEDFPGMDSLPCYKV 561
+YAV A + +G +GD V P + F++ +G + L ++V
Sbjct: 40 VYAVQDWDPIGKAYVMSRGIVGDINGEMCVASPLYKQHFSLKSGQCLEDEAH-CLKTWRV 98
Query: 562 TIQNDDSVVVQARKDELKNKKR 583
T+ ++ V EL++
Sbjct: 99 TVDDNQ---VCYLAKELEHHHH 117
|
| >2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3 Length = 113 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 5e-11
Identities = 10/72 (13%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Query: 507 IYAVGTKCSHYGA-PLVKGSLGDGR----VRCPWHGACFNIATGDIEDFPGMDSLPCYKV 561
++A+ + + L +G + + + V P F ++ G + S+ Y+
Sbjct: 42 VFAISNIDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLSDGLCMEDEQF-SVKHYEA 100
Query: 562 TIQNDDSVVVQA 573
+++ V ++
Sbjct: 101 RVKDGV-VQLRG 111
|
| >2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3 Length = 113 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 5e-11
Identities = 10/72 (13%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Query: 978 IYAVGTKCSHYGA-PLVKGSLGDGR----VRCPWHGACFNIATGDIEDFPGMDSLPCYKV 1032
++A+ + + L +G + + + V P F ++ G + S+ Y+
Sbjct: 42 VFAISNIDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLSDGLCMEDEQF-SVKHYEA 100
Query: 1033 TIQNDDSVVVQA 1044
+++ V ++
Sbjct: 101 RVKDGV-VQLRG 111
|
| >2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3 Length = 130 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 5e-11
Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 6/66 (9%)
Query: 507 IYAVGTKCSHYGAP-LVKGSLGDGR----VRCPWHGACFNIATGDIEDFPGMDSLPCYKV 561
+YA+ A L +G + + + V P F + G + S+ Y
Sbjct: 39 VYAISNIDPFAQASVLSRGIVAEHQDDLWVASPLKKQHFRLYDGFCLEDGAY-SVAAYDT 97
Query: 562 TIQNDD 567
+ N +
Sbjct: 98 QVTNGN 103
|
| >2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3 Length = 130 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 5e-11
Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 6/66 (9%)
Query: 978 IYAVGTKCSHYGAP-LVKGSLGDGR----VRCPWHGACFNIATGDIEDFPGMDSLPCYKV 1032
+YA+ A L +G + + + V P F + G + S+ Y
Sbjct: 39 VYAISNIDPFAQASVLSRGIVAEHQDDLWVASPLKKQHFRLYDGFCLEDGAY-SVAAYDT 97
Query: 1033 TIQNDD 1038
+ N +
Sbjct: 98 QVTNGN 103
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 3e-10
Identities = 44/302 (14%), Positives = 82/302 (27%), Gaps = 62/302 (20%)
Query: 93 IKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIY----LATG 148
D + + E + I +G + + + + Y + G
Sbjct: 53 RDVDELKVDLSEALPEKGIQFQEGT--VEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIG 110
Query: 149 SSPRTISQADGVNK-VFYLRTVEDANNIAPHI-----------------TPESNVVVIGS 190
+ T G +K + + E A + + V +
Sbjct: 111 AHLAT-ELVKGWDKYGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHNPKPKVPEN 169
Query: 191 SFIGMEAAAFCA------------------SKVKSVTVVGRGAVPFQESLGKEVGERITK 232
++A KV VTV G L + +
Sbjct: 170 FVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVH-VTVFSPGEYLS--DLSPNSRKAVAS 226
Query: 233 LFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGV 292
++ G+K V + ++E D + G TIPAD+ I+ N +
Sbjct: 227 IYNQLGIKLVHNFKIKEIREHEIVD------EKGNTIPADITILLPPYTGNPALKNSTPD 280
Query: 293 ELNGQKAVVVNEYLE-TNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNM 351
++ + + + VYA GD K + GRIAA ++
Sbjct: 281 LVDDGGFIPTDLNMVSIKYDNVYAVGDANSMT----VPKLGYLAVMT-----GRIAAQHL 331
Query: 352 VE 353
Sbjct: 332 AN 333
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 3e-10
Identities = 44/302 (14%), Positives = 82/302 (27%), Gaps = 62/302 (20%)
Query: 645 IKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIY----LATG 700
D + + E + I +G + + + + Y + G
Sbjct: 53 RDVDELKVDLSEALPEKGIQFQEGT--VEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIG 110
Query: 701 SSPRTISQADGVNK-VFYLRTVEDANNIAPHI-----------------TPESNVVVIGS 742
+ T G +K + + E A + + V +
Sbjct: 111 AHLAT-ELVKGWDKYGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHNPKPKVPEN 169
Query: 743 SFIGMEAAAFCA------------------SKVKSVTVVGRGAVPFQESLGKEVGERITK 784
++A KV VTV G L + +
Sbjct: 170 FVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVH-VTVFSPGEYLS--DLSPNSRKAVAS 226
Query: 785 LFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGV 844
++ G+K V + ++E D + G TIPAD+ I+ N +
Sbjct: 227 IYNQLGIKLVHNFKIKEIREHEIVD------EKGNTIPADITILLPPYTGNPALKNSTPD 280
Query: 845 ELNGQKAVVVNEYLE-TNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNM 903
++ + + + VYA GD K + GRIAA ++
Sbjct: 281 LVDDGGFIPTDLNMVSIKYDNVYAVGDANSMT----VPKLGYLAVMT-----GRIAAQHL 331
Query: 904 VE 905
Sbjct: 332 AN 333
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 3e-10
Identities = 44/302 (14%), Positives = 82/302 (27%), Gaps = 62/302 (20%)
Query: 1116 IKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIY----LATG 1171
D + + E + I +G + + + + Y + G
Sbjct: 53 RDVDELKVDLSEALPEKGIQFQEGT--VEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIG 110
Query: 1172 SSPRTISQADGVNK-VFYLRTVEDANNIAPHI-----------------TPESNVVVIGS 1213
+ T G +K + + E A + + V +
Sbjct: 111 AHLAT-ELVKGWDKYGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHNPKPKVPEN 169
Query: 1214 SFIGMEAAAFCA------------------SKVKSVTVVGRGAVPFQESLGKEVGERITK 1255
++A KV VTV G L + +
Sbjct: 170 FVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVH-VTVFSPGEYLS--DLSPNSRKAVAS 226
Query: 1256 LFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGV 1315
++ G+K V + ++E D + G TIPAD+ I+ N +
Sbjct: 227 IYNQLGIKLVHNFKIKEIREHEIVD------EKGNTIPADITILLPPYTGNPALKNSTPD 280
Query: 1316 ELNGQKAVVVNEYLE-TNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNM 1374
++ + + + VYA GD K + GRIAA ++
Sbjct: 281 LVDDGGFIPTDLNMVSIKYDNVYAVGDANSMT----VPKLGYLAVMT-----GRIAAQHL 331
Query: 1375 VE 1376
Sbjct: 332 AN 333
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 7e-05
Identities = 26/118 (22%), Positives = 41/118 (34%), Gaps = 14/118 (11%)
Query: 185 VVVIGSSFIGMEAAAFCASKVKS---VTVVGRGA----------VPFQESLGKEVGERIT 231
V+V+G F + AA V S V V+ + V E+ ++
Sbjct: 4 VLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLS 63
Query: 232 KLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDG 289
+ KG++F + V + + D VIVGIG L T + G
Sbjct: 64 EALPEKGIQFQ-EGTVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATELVKG 120
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 7e-05
Identities = 26/118 (22%), Positives = 41/118 (34%), Gaps = 14/118 (11%)
Query: 737 VVVIGSSFIGMEAAAFCASKVKS---VTVVGRGA----------VPFQESLGKEVGERIT 783
V+V+G F + AA V S V V+ + V E+ ++
Sbjct: 4 VLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLS 63
Query: 784 KLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDG 841
+ KG++F + V + + D VIVGIG L T + G
Sbjct: 64 EALPEKGIQFQ-EGTVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATELVKG 120
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 7e-05
Identities = 26/118 (22%), Positives = 41/118 (34%), Gaps = 14/118 (11%)
Query: 1208 VVVIGSSFIGMEAAAFCASKVKS---VTVVGRGA----------VPFQESLGKEVGERIT 1254
V+V+G F + AA V S V V+ + V E+ ++
Sbjct: 4 VLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLS 63
Query: 1255 KLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDG 1312
+ KG++F + V + + D VIVGIG L T + G
Sbjct: 64 EALPEKGIQFQ-EGTVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATELVKG 120
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* Length = 323 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 8e-10
Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 13/141 (9%)
Query: 184 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESL--GKEVGERITKLFESKGVKF 241
V VIG +E A +S V ++ R +++ E + + V+F
Sbjct: 156 VVAVIGGGDSALEGAEILSSYSTKVYLIHR-----RDTFKAQPIYVET---VKKKPNVEF 207
Query: 242 VMKANVSSFEKNEK-NDVTAANLDNG--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQK 298
V+ + V + ++ V NL G + + V + IG T++ G+E +
Sbjct: 208 VLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNG 267
Query: 299 AVVVNEYLETNVPGVYAGGDI 319
+ V+E++ T+VPGV+A GD
Sbjct: 268 YIKVDEWMRTSVPGVFAAGDC 288
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* Length = 323 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 8e-10
Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 13/141 (9%)
Query: 736 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESL--GKEVGERITKLFESKGVKF 793
V VIG +E A +S V ++ R +++ E + + V+F
Sbjct: 156 VVAVIGGGDSALEGAEILSSYSTKVYLIHR-----RDTFKAQPIYVET---VKKKPNVEF 207
Query: 794 VMKANVSSFEKNEK-NDVTAANLDNG--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQK 850
V+ + V + ++ V NL G + + V + IG T++ G+E +
Sbjct: 208 VLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNG 267
Query: 851 AVVVNEYLETNVPGVYAGGDI 871
+ V+E++ T+VPGV+A GD
Sbjct: 268 YIKVDEWMRTSVPGVFAAGDC 288
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* Length = 323 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 8e-10
Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 13/141 (9%)
Query: 1207 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESL--GKEVGERITKLFESKGVKF 1264
V VIG +E A +S V ++ R +++ E + + V+F
Sbjct: 156 VVAVIGGGDSALEGAEILSSYSTKVYLIHR-----RDTFKAQPIYVET---VKKKPNVEF 207
Query: 1265 VMKANVSSFEKNEK-NDVTAANLDNG--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQK 1321
V+ + V + ++ V NL G + + V + IG T++ G+E +
Sbjct: 208 VLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNG 267
Query: 1322 AVVVNEYLETNVPGVYAGGDI 1342
+ V+E++ T+VPGV+A GD
Sbjct: 268 YIKVDEWMRTSVPGVFAAGDC 288
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 1e-09
Identities = 56/294 (19%), Positives = 88/294 (29%), Gaps = 52/294 (17%)
Query: 48 VVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR----VKLSKQLDIKADSILLRTE 103
VVG GPSG L G+ L + V L + R +
Sbjct: 396 VVGAGPSGLEAARALGVRGYDVVLA---EAG----RDLGGRVTQESALPGLSA--WGRVK 446
Query: 104 EFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-- 161
E+ + + + +I +S + I F + ATG++ RT A
Sbjct: 447 EYRE-AVLAELPNVEIYRESPMTGDDIV-----EFGFEHVITATGATWRTDGVARFHTTA 500
Query: 162 -------KVFYLRTVEDANNIAPHITPESNVVVI--GSSFIGMEAAAFCASKVKSVTVVG 212
+V +D A + VVV ++G A A K V++V
Sbjct: 501 LPIAEGMQVL---GPDDL--FAGRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVT 555
Query: 213 RGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG--TTIP 270
GA + RI + GV V V + VT + +
Sbjct: 556 PGAQVSSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVGAGG---VTVRDTYASIERELE 612
Query: 271 ADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPL 324
D V++ + +L V + V GD A+AP
Sbjct: 613 CDAVVMVTARLPREELYL----DL-------VARRDAGEIASVRGIGD-AWAPG 654
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 1e-09
Identities = 56/294 (19%), Positives = 88/294 (29%), Gaps = 52/294 (17%)
Query: 600 VVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR----VKLSKQLDIKADSILLRTE 655
VVG GPSG L G+ L + V L + R +
Sbjct: 396 VVGAGPSGLEAARALGVRGYDVVLA---EAG----RDLGGRVTQESALPGLSA--WGRVK 446
Query: 656 EFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-- 713
E+ + + + +I +S + I F + ATG++ RT A
Sbjct: 447 EYRE-AVLAELPNVEIYRESPMTGDDIV-----EFGFEHVITATGATWRTDGVARFHTTA 500
Query: 714 -------KVFYLRTVEDANNIAPHITPESNVVVI--GSSFIGMEAAAFCASKVKSVTVVG 764
+V +D A + VVV ++G A A K V++V
Sbjct: 501 LPIAEGMQVL---GPDDL--FAGRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVT 555
Query: 765 RGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG--TTIP 822
GA + RI + GV V V + VT + +
Sbjct: 556 PGAQVSSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVGAGG---VTVRDTYASIERELE 612
Query: 823 ADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPL 876
D V++ + +L V + V GD A+AP
Sbjct: 613 CDAVVMVTARLPREELYL----DL-------VARRDAGEIASVRGIGD-AWAPG 654
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 1e-09
Identities = 56/294 (19%), Positives = 88/294 (29%), Gaps = 52/294 (17%)
Query: 1071 VVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR----VKLSKQLDIKADSILLRTE 1126
VVG GPSG L G+ L + V L + R +
Sbjct: 396 VVGAGPSGLEAARALGVRGYDVVLA---EAG----RDLGGRVTQESALPGLSA--WGRVK 446
Query: 1127 EFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-- 1184
E+ + + + +I +S + I F + ATG++ RT A
Sbjct: 447 EYRE-AVLAELPNVEIYRESPMTGDDIV-----EFGFEHVITATGATWRTDGVARFHTTA 500
Query: 1185 -------KVFYLRTVEDANNIAPHITPESNVVVI--GSSFIGMEAAAFCASKVKSVTVVG 1235
+V +D A + VVV ++G A A K V++V
Sbjct: 501 LPIAEGMQVL---GPDDL--FAGRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVT 555
Query: 1236 RGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG--TTIP 1293
GA + RI + GV V V + VT + +
Sbjct: 556 PGAQVSSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVGAGG---VTVRDTYASIERELE 612
Query: 1294 ADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPL 1347
D V++ + +L V + V GD A+AP
Sbjct: 613 CDAVVMVTARLPREELYL----DL-------VARRDAGEIASVRGIGD-AWAPG 654
|
| >1nyk_A Rieske iron-sulfur protein; beta barrel, iron sulfur cluster, electron transport; 1.31A {Thermus thermophilus} SCOP: b.33.1.1 PDB: 3fou_A Length = 165 | Back alignment and structure |
|---|
Score = 53.4 bits (128), Expect = 4e-08
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Query: 966 MDPLAAQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIAT-GDIEDFPGM 1024
+ P AQ A + A C+H G + + + CP HG +++ + P
Sbjct: 68 LAPEVAQHAAEGVVAYSAVCTHLGCIVSQWVADEEAALCPCHGGVYDLRHGAQVIAGPPP 127
Query: 1025 DSLPCYKVTIQNDDSVVV 1042
+P V +++ V
Sbjct: 128 RPVPQLPVRVEDGVLVAA 145
|
| >1nyk_A Rieske iron-sulfur protein; beta barrel, iron sulfur cluster, electron transport; 1.31A {Thermus thermophilus} SCOP: b.33.1.1 PDB: 3fou_A Length = 165 | Back alignment and structure |
|---|
Score = 53.1 bits (127), Expect = 5e-08
Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 507 IYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIAT-GDIEDFPGMDSLPCYKVTIQN 565
+ A C+H G + + + CP HG +++ + P +P V +++
Sbjct: 80 VVAYSAVCTHLGCIVSQWVADEEAALCPCHGGVYDLRHGAQVIAGPPPRPVPQLPVRVED 139
Query: 566 DDSVVV 571
V
Sbjct: 140 GVLVAA 145
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Length = 456 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 7e-08
Identities = 71/324 (21%), Positives = 110/324 (33%), Gaps = 84/324 (25%)
Query: 48 VVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV-----------KLSKQLDIKAD 96
V+G GP+G E LR G+ +Y + YDR+ KL K
Sbjct: 127 VIGAGPAGLAAAEELRAKGYEVHVY----DR---YDRMGGLLVYGIPGFKLEK------- 172
Query: 97 SILLRTEEFYKDNDIHVIKGKKI---ISDSELNEKKIKLQDGTSIDFTKIYLATGS-SPR 152
S++ R + D + ++ S EL + +ATG R
Sbjct: 173 SVVERRVKLLADAGVIYHPNFEVGRDASLPELRR-----------KHVAVLVATGVYKAR 221
Query: 153 TI----SQADGV----------NKVFYLRTVEDANNIAPHITPES-NVVVIGSSFIGMEA 197
I S + NKV TVE N + +VVV+G M+
Sbjct: 222 DIKAPGSGLGNIVAALDYLTTSNKVSLGDTVEAYEN--GSLNAAGKHVVVLGGGDTAMD- 278
Query: 198 AAFCA-----SKVKSVTVVGRG------AVPFQESLGKEVG-ERI----TKLFESKG-VK 240
C SV + R + + +E G E I + F V
Sbjct: 279 ---CVRTAIRQGATSVKCLYRRDRKNMPGSQREVAHAEEEGVEFIWQAAPEGFTGDTVVT 335
Query: 241 FVMKANVSSFEKNEKNDVTAANLDNGT--TIPADLVIVGIGTVLN--TNYLDGKGVELNG 296
V + + T ++ G+ T+ ADLVI +G N D +++
Sbjct: 336 GVRAVRIHLGVADATGRQTPQVIE-GSEFTVQADLVIKALGFEPEDLPNAFDEPELKVTR 394
Query: 297 QKAVVVNE-YLETNVPGVYAGGDI 319
++V+ TN+ GV+A GDI
Sbjct: 395 WGTLLVDHRTKMTNMDGVFAAGDI 418
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Length = 456 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 7e-08
Identities = 71/324 (21%), Positives = 110/324 (33%), Gaps = 84/324 (25%)
Query: 600 VVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV-----------KLSKQLDIKAD 648
V+G GP+G E LR G+ +Y + YDR+ KL K
Sbjct: 127 VIGAGPAGLAAAEELRAKGYEVHVY----DR---YDRMGGLLVYGIPGFKLEK------- 172
Query: 649 SILLRTEEFYKDNDIHVIKGKKI---ISDSELNEKKIKLQDGTSIDFTKIYLATGS-SPR 704
S++ R + D + ++ S EL + +ATG R
Sbjct: 173 SVVERRVKLLADAGVIYHPNFEVGRDASLPELRR-----------KHVAVLVATGVYKAR 221
Query: 705 TI----SQADGV----------NKVFYLRTVEDANNIAPHITPES-NVVVIGSSFIGMEA 749
I S + NKV TVE N + +VVV+G M+
Sbjct: 222 DIKAPGSGLGNIVAALDYLTTSNKVSLGDTVEAYEN--GSLNAAGKHVVVLGGGDTAMD- 278
Query: 750 AAFCA-----SKVKSVTVVGRG------AVPFQESLGKEVG-ERI----TKLFESKG-VK 792
C SV + R + + +E G E I + F V
Sbjct: 279 ---CVRTAIRQGATSVKCLYRRDRKNMPGSQREVAHAEEEGVEFIWQAAPEGFTGDTVVT 335
Query: 793 FVMKANVSSFEKNEKNDVTAANLDNGT--TIPADLVIVGIGTVLN--TNYLDGKGVELNG 848
V + + T ++ G+ T+ ADLVI +G N D +++
Sbjct: 336 GVRAVRIHLGVADATGRQTPQVIE-GSEFTVQADLVIKALGFEPEDLPNAFDEPELKVTR 394
Query: 849 QKAVVVNE-YLETNVPGVYAGGDI 871
++V+ TN+ GV+A GDI
Sbjct: 395 WGTLLVDHRTKMTNMDGVFAAGDI 418
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Length = 456 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 7e-08
Identities = 71/324 (21%), Positives = 110/324 (33%), Gaps = 84/324 (25%)
Query: 1071 VVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV-----------KLSKQLDIKAD 1119
V+G GP+G E LR G+ +Y + YDR+ KL K
Sbjct: 127 VIGAGPAGLAAAEELRAKGYEVHVY----DR---YDRMGGLLVYGIPGFKLEK------- 172
Query: 1120 SILLRTEEFYKDNDIHVIKGKKI---ISDSELNEKKIKLQDGTSIDFTKIYLATGS-SPR 1175
S++ R + D + ++ S EL + +ATG R
Sbjct: 173 SVVERRVKLLADAGVIYHPNFEVGRDASLPELRR-----------KHVAVLVATGVYKAR 221
Query: 1176 TI----SQADGV----------NKVFYLRTVEDANNIAPHITPES-NVVVIGSSFIGMEA 1220
I S + NKV TVE N + +VVV+G M+
Sbjct: 222 DIKAPGSGLGNIVAALDYLTTSNKVSLGDTVEAYEN--GSLNAAGKHVVVLGGGDTAMD- 278
Query: 1221 AAFCA-----SKVKSVTVVGRG------AVPFQESLGKEVG-ERI----TKLFESKG-VK 1263
C SV + R + + +E G E I + F V
Sbjct: 279 ---CVRTAIRQGATSVKCLYRRDRKNMPGSQREVAHAEEEGVEFIWQAAPEGFTGDTVVT 335
Query: 1264 FVMKANVSSFEKNEKNDVTAANLDNGT--TIPADLVIVGIGTVLN--TNYLDGKGVELNG 1319
V + + T ++ G+ T+ ADLVI +G N D +++
Sbjct: 336 GVRAVRIHLGVADATGRQTPQVIE-GSEFTVQADLVIKALGFEPEDLPNAFDEPELKVTR 394
Query: 1320 QKAVVVNE-YLETNVPGVYAGGDI 1342
++V+ TN+ GV+A GDI
Sbjct: 395 WGTLLVDHRTKMTNMDGVFAAGDI 418
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 3e-07
Identities = 54/310 (17%), Positives = 98/310 (31%), Gaps = 59/310 (19%)
Query: 48 VVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR----VKLSKQLDIKADSILLRTE 103
+VG GPSG+ L ++G+T L D ++ + L +
Sbjct: 394 IVGAGPSGSEAARVLMESGYTVHLT---DTA----EKIGGHLNQVAALPGLGE--WSYHR 444
Query: 104 EFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRT---------- 153
++ + I + K S L +K + D K+ +ATG+ T
Sbjct: 445 DYRE-TQITKLLKKNKESQLALGQKPMTADDVLQYGADKVIIATGARWNTDGTNCLTHDP 503
Query: 154 ISQADG-VNKVFYLRTVEDANNIAPHITPESNVVVI--GSSFIGMEAAAFCASKVKSVTV 210
I AD + T E + VV++ + F+ A A+ VT+
Sbjct: 504 IPGADASLPDQL---TPEQV--MDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTI 558
Query: 211 VGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKN---------------EK 255
V + + + V+ + S E +
Sbjct: 559 VSGVHLA-NYMHFTLEYPNMMRRLHELHVEELGDHFCSRIEPGRMEIYNIWGDGSKRTYR 617
Query: 256 NDVTAANLDNG--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGV 313
+ N I D +++ G + EL +++ E+ E ++ G+
Sbjct: 618 GPGVSPRDANTSHRWIEFDSLVLVTGRHSECTLWN----ELKARES----EWAENDIKGI 669
Query: 314 YAGGDIAYAP 323
Y GD A AP
Sbjct: 670 YLIGD-AEAP 678
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 3e-07
Identities = 54/310 (17%), Positives = 98/310 (31%), Gaps = 59/310 (19%)
Query: 600 VVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR----VKLSKQLDIKADSILLRTE 655
+VG GPSG+ L ++G+T L D ++ + L +
Sbjct: 394 IVGAGPSGSEAARVLMESGYTVHLT---DTA----EKIGGHLNQVAALPGLGE--WSYHR 444
Query: 656 EFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRT---------- 705
++ + I + K S L +K + D K+ +ATG+ T
Sbjct: 445 DYRE-TQITKLLKKNKESQLALGQKPMTADDVLQYGADKVIIATGARWNTDGTNCLTHDP 503
Query: 706 ISQADG-VNKVFYLRTVEDANNIAPHITPESNVVVI--GSSFIGMEAAAFCASKVKSVTV 762
I AD + T E + VV++ + F+ A A+ VT+
Sbjct: 504 IPGADASLPDQL---TPEQV--MDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTI 558
Query: 763 VGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKN---------------EK 807
V + + + V+ + S E +
Sbjct: 559 VSGVHLA-NYMHFTLEYPNMMRRLHELHVEELGDHFCSRIEPGRMEIYNIWGDGSKRTYR 617
Query: 808 NDVTAANLDNG--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGV 865
+ N I D +++ G + EL +++ E+ E ++ G+
Sbjct: 618 GPGVSPRDANTSHRWIEFDSLVLVTGRHSECTLWN----ELKARES----EWAENDIKGI 669
Query: 866 YAGGDIAYAP 875
Y GD A AP
Sbjct: 670 YLIGD-AEAP 678
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 3e-07
Identities = 54/310 (17%), Positives = 98/310 (31%), Gaps = 59/310 (19%)
Query: 1071 VVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR----VKLSKQLDIKADSILLRTE 1126
+VG GPSG+ L ++G+T L D ++ + L +
Sbjct: 394 IVGAGPSGSEAARVLMESGYTVHLT---DTA----EKIGGHLNQVAALPGLGE--WSYHR 444
Query: 1127 EFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRT---------- 1176
++ + I + K S L +K + D K+ +ATG+ T
Sbjct: 445 DYRE-TQITKLLKKNKESQLALGQKPMTADDVLQYGADKVIIATGARWNTDGTNCLTHDP 503
Query: 1177 ISQADG-VNKVFYLRTVEDANNIAPHITPESNVVVI--GSSFIGMEAAAFCASKVKSVTV 1233
I AD + T E + VV++ + F+ A A+ VT+
Sbjct: 504 IPGADASLPDQL---TPEQV--MDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTI 558
Query: 1234 VGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKN---------------EK 1278
V + + + V+ + S E +
Sbjct: 559 VSGVHLA-NYMHFTLEYPNMMRRLHELHVEELGDHFCSRIEPGRMEIYNIWGDGSKRTYR 617
Query: 1279 NDVTAANLDNG--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGV 1336
+ N I D +++ G + EL +++ E+ E ++ G+
Sbjct: 618 GPGVSPRDANTSHRWIEFDSLVLVTGRHSECTLWN----ELKARES----EWAENDIKGI 669
Query: 1337 YAGGDIAYAP 1346
Y GD A AP
Sbjct: 670 YLIGD-AEAP 678
|
| >3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase, oxidoreductase; 1.75A {Stenotrophomonas maltophilia} PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A* Length = 349 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 5e-07
Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 11/82 (13%)
Query: 964 VGMDPLAAQFAERNI----------YAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNI 1013
+ PL + + A+ C H APL G L +G ++CP+HG F+
Sbjct: 18 LSEKPLGRTILDTPLALYRQPDGVVAALLDICPHRFAPLSDGILVNGHLQCPYHGLEFD- 76
Query: 1014 ATGDIEDFPGMDSLPCYKVTIQ 1035
G P + + ++
Sbjct: 77 GGGQCVHNPHGNGARPASLNVR 98
|
| >3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase, oxidoreductase; 1.75A {Stenotrophomonas maltophilia} PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A* Length = 349 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 2e-06
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 506 NIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQ 564
+ A+ C H APL G L +G ++CP+HG F+ G P + + ++
Sbjct: 41 VVAALLDICPHRFAPLSDGILVNGHLQCPYHGLEFD-GGGQCVHNPHGNGARPASLNVR 98
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 6e-07
Identities = 25/194 (12%), Positives = 57/194 (29%), Gaps = 22/194 (11%)
Query: 177 PHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGA------VPFQESLGKEVGERI 230
+ VVIG + G +AA A + + L +R+
Sbjct: 161 FDNFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRL 220
Query: 231 TKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTI-PADLVIVGIGTVLNTNYLDG 289
+ + +G + M + + + + N + D+G ++ I+ G N +
Sbjct: 221 GNVIK-QGARIEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDATKNPIVQ 279
Query: 290 KGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSF---YNKNASIGHYQLAQYHGRI 346
+ Q + T P ++ G Y + +
Sbjct: 280 QLFVTTNQDIKLTTHDESTRYPNIFMIGATVENDNAKLCYIYK----------FRARFAV 329
Query: 347 AALNMVEKKTSLST 360
A +++ ++ L
Sbjct: 330 LA-HLLTQREGLPA 342
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 6e-07
Identities = 25/194 (12%), Positives = 57/194 (29%), Gaps = 22/194 (11%)
Query: 729 PHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGA------VPFQESLGKEVGERI 782
+ VVIG + G +AA A + + L +R+
Sbjct: 161 FDNFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRL 220
Query: 783 TKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTI-PADLVIVGIGTVLNTNYLDG 841
+ + +G + M + + + + N + D+G ++ I+ G N +
Sbjct: 221 GNVIK-QGARIEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDATKNPIVQ 279
Query: 842 KGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSF---YNKNASIGHYQLAQYHGRI 898
+ Q + T P ++ G Y + +
Sbjct: 280 QLFVTTNQDIKLTTHDESTRYPNIFMIGATVENDNAKLCYIYK----------FRARFAV 329
Query: 899 AALNMVEKKTSLST 912
A +++ ++ L
Sbjct: 330 LA-HLLTQREGLPA 342
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 6e-07
Identities = 25/194 (12%), Positives = 57/194 (29%), Gaps = 22/194 (11%)
Query: 1200 PHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGA------VPFQESLGKEVGERI 1253
+ VVIG + G +AA A + + L +R+
Sbjct: 161 FDNFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRL 220
Query: 1254 TKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTI-PADLVIVGIGTVLNTNYLDG 1312
+ + +G + M + + + + N + D+G ++ I+ G N +
Sbjct: 221 GNVIK-QGARIEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDATKNPIVQ 279
Query: 1313 KGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSF---YNKNASIGHYQLAQYHGRI 1369
+ Q + T P ++ G Y + +
Sbjct: 280 QLFVTTNQDIKLTTHDESTRYPNIFMIGATVENDNAKLCYIYK----------FRARFAV 329
Query: 1370 AALNMVEKKTSLST 1383
A +++ ++ L
Sbjct: 330 LA-HLLTQREGLPA 342
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 1e-06
Identities = 55/412 (13%), Positives = 118/412 (28%), Gaps = 106/412 (25%)
Query: 780 ERITKLFESKGVKFVMKANVSSFE----KNEKNDVTAAN------LDNGTTIPADLVIVG 829
+ F+ K V+ + K+ +S E K+ V+ L + V
Sbjct: 27 DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV--- 83
Query: 830 IGTVLNTNY--LDGKGVELNGQKAVVVNEYLET-----NVPGVYAGGDIAYAPLHSFYNK 882
VL NY L Q +++ Y+E N V+A +++ + +
Sbjct: 84 -EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142
Query: 883 NASIGHYQL--AQY---HG------RIAALNMVEKKTSLSTIPF--FWTMLFGVGFRFAG 929
+L A+ G AL++ + F FW +
Sbjct: 143 AL----LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW---LNLKNC--- 192
Query: 930 YAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTVGMDPL-----AAQFAERNIYAVGTK 984
++ ++ L+ L D + + + Q R +
Sbjct: 193 ----NSPETVLEMLQKL-----LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK---S 240
Query: 985 CSHYGAPLVKGSLGDGRVRCPWHGACFNIA------TGDIEDFPGMDSLPCYKVTIQNDD 1038
+ LV L + V+ FN++ T + + + +++ +
Sbjct: 241 KPYENCLLV---LLN--VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 1039 SVVVQARKDEL-----KNKKRKLPMAKLSSGNKDTFIVVGGGP-SGATCVETLRQNGFTG 1092
+ L + + LP V+ P + E++R
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPRE-----------VLTTNPRRLSIIAESIRDG---- 340
Query: 1093 KLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEF---YKD-----NDIHV 1136
T +N+ + KL+ ++ + L E+ + H+
Sbjct: 341 ---LATWDNWKHVNCDKLTTIIESSLNV--LEPAEYRKMFDRLSVFPPSAHI 387
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 4e-06
Identities = 95/626 (15%), Positives = 176/626 (28%), Gaps = 219/626 (34%)
Query: 401 SNADKVLAILTVGMDPLAAQFAEQVLEFPYSSL--PHSHRCLGVVLGKLDYHGTITISPN 458
S ++ L + + +F E+VL Y L P + Y N
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 459 SP------SVS----FLQRTQWLTSILP--------LIGSSFSQSTLAISPASSTPKTLA 500
+VS +L+ Q L + P ++G ++ +A+ S
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG--SGKTWVALDVCLSYKVQCK 179
Query: 501 QSTTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPW--HGACFNIATGDIEDFPGMDSLPC 558
I+ W C N +E + L
Sbjct: 180 MD--FKIF--------------------------WLNLKNC-NSPETVLEM---LQKL-L 206
Query: 559 YKV----TIQNDDSVVVQARKDELKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETL 614
Y++ T ++D S ++ R ++ + R+L +K ++ +V+
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP---YENCLLVL------------- 250
Query: 615 RQNGFTGKLYFITDENFLPYDRV---KLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKI 671
V K ++ ILL T + +
Sbjct: 251 --------------------LNVQNAKAWNAFNLSC-KILLTT----RFKQVTDFLSAAT 285
Query: 672 ISDSELNEKKIKLQDGTSID-FTKIYL----------ATGSSPRTISQ-----ADGVNKV 715
+ L+ + L K YL ++PR +S DG+
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLK-YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344
Query: 716 FYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAF------CASKVKSVTVVGRGAVP 769
+ H+ + +I SS +E A + + S +P
Sbjct: 345 DNWK----------HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH------IP 388
Query: 770 FQ------ESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPA 823
+ K + S EK K +IP
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKY----------SLVEKQPKEST--------ISIP- 429
Query: 824 DLVIVGIGTVLNTNYLDGKGVELNGQKAV---VVNEYLETNVPGVYAGGDIAYAPLHS-F 879
+ YL+ K V+L + A+ +V+ Y N+P + D+ L F
Sbjct: 430 SI------------YLELK-VKLENEYALHRSIVDHY---NIPKTFDSDDLIPPYLDQYF 473
Query: 880 YNKNASIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRF-------AGYA- 931
Y+ IG +H + + E+ T M+F + FRF A
Sbjct: 474 YS---HIG------HH--LKNIEHPERMTLFR-------MVF-LDFRFLEQKIRHDSTAW 514
Query: 932 -AGHTQVDIVGDLEALKFTAYYSNAD 956
A + ++ + L+ + Y + D
Sbjct: 515 NASGSILNTLQQLK--FYKPYICDND 538
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 1e-05
Identities = 92/634 (14%), Positives = 170/634 (26%), Gaps = 187/634 (29%)
Query: 228 ERITKLFESKGVKFVMKANVSSFE----KNEKNDVTAAN------LDNGTTIPADLVIVG 277
+ F+ K V+ + K+ +S E K+ V+ L + V
Sbjct: 27 DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV--- 83
Query: 278 IGTVLNTNY--LDGKGVELNGQKAVVVNEYLET-----NVPGVYAGGDIAYAPLHSFYNK 330
VL NY L Q +++ Y+E N V+A +++ + +
Sbjct: 84 -EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142
Query: 331 NASIGHYQL--AQY---HG------RIAALNMVEKKTSLSTIPF--FWTMLFGVGFRFAG 377
+L A+ G AL++ + F FW +
Sbjct: 143 AL----LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW---LNLKNC--- 192
Query: 378 YAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTVGMD--PLAAQFAEQVLEFPYSSLPH 435
++ ++ L+ L D + L + L S P+
Sbjct: 193 ----NSPETVLEMLQKL-----LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 436 SHRCLGVVLGKLDYHGTITISPN--SPSV--SF-LQ-RTQWLTSILPLIGSSFSQSTLAI 489
CL V L N + +F L + L+ + F Q T +
Sbjct: 244 E-NCLLV----LL---------NVQNAKAWNAFNLSCKI--------LLTTRFKQVTDFL 281
Query: 490 SPASST-------PKTLAQSTTSNIYA--VGTKCS------HYGAPLVKGSLG----DGR 530
S A++T TL ++ + + P + DG
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 531 VRCPW----HGACFNIAT---GDIEDFPGMDSLPCYK--------VTI------------ 563
W H C + T + + + I
Sbjct: 342 AT--WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399
Query: 564 --QNDDSVVVQARKDELKNKKRK-----LPM----AKLSSGNKDTF---IVVGGGPSGAT 609
+ VV + K L K+ K +P K+ N+ IV
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV--------D 451
Query: 610 CVETLR---QNGFTGKL---YFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDI 663
+ + YF + + + L + + L F D
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFY---SHIGH---HLKNIE--HPERMTLFRMVFL---DF 500
Query: 664 HVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVED 723
++ +KI DS + + T K Y I D + + + D
Sbjct: 501 RFLE-QKIRHDSTAWNASGSILN-TLQQL-KFYK------PYICDNDPKYER-LVNAILD 550
Query: 724 -ANNIAPHI--TPESNVVVIG----SSFIGMEAA 750
I ++ + ++++ I I EA
Sbjct: 551 FLPKIEENLICSKYTDLLRIALMAEDEAIFEEAH 584
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 2e-06
Identities = 49/298 (16%), Positives = 85/298 (28%), Gaps = 83/298 (27%)
Query: 48 VVGGGPSGATCVETLRQNGFTGKLYFITDE---NFLPYDRVKLSKQLDIKADSILLRTEE 104
VVG GP+G G L+ E F ++KQ+ K + T
Sbjct: 378 VVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFN------IAKQIPGKEE--FYETLR 429
Query: 105 FYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSID------FTKIYLATGSSPRT--ISQ 156
+Y+ + + L+ ++ F + LA+G PRT I
Sbjct: 430 YYR---------------RMIEVTGVTLKLNHTVTADQLQAFDETILASGIVPRTPPIDG 474
Query: 157 ADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVG---- 212
D + + D + + V +IG IG + A + + +S +
Sbjct: 475 IDHPKVL----SYLDV--LRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFC 528
Query: 213 ---------------------------------RGAVPFQESLGKEVGERITKLFESKGV 239
R A + LGK G S+GV
Sbjct: 529 NEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGV 588
Query: 240 KFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNT---NYLDGKGVEL 294
K + + + + + + D V++ G N L G +
Sbjct: 589 KMIPGVSYQKIDDDG---LHVVINGETQVLAVDNVVICAGQEPNRALAQPLIDSGKTV 643
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 2e-06
Identities = 49/298 (16%), Positives = 85/298 (28%), Gaps = 83/298 (27%)
Query: 600 VVGGGPSGATCVETLRQNGFTGKLYFITDE---NFLPYDRVKLSKQLDIKADSILLRTEE 656
VVG GP+G G L+ E F ++KQ+ K + T
Sbjct: 378 VVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFN------IAKQIPGKEE--FYETLR 429
Query: 657 FYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSID------FTKIYLATGSSPRT--ISQ 708
+Y+ + + L+ ++ F + LA+G PRT I
Sbjct: 430 YYR---------------RMIEVTGVTLKLNHTVTADQLQAFDETILASGIVPRTPPIDG 474
Query: 709 ADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVG---- 764
D + + D + + V +IG IG + A + + +S +
Sbjct: 475 IDHPKVL----SYLDV--LRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFC 528
Query: 765 ---------------------------------RGAVPFQESLGKEVGERITKLFESKGV 791
R A + LGK G S+GV
Sbjct: 529 NEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGV 588
Query: 792 KFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNT---NYLDGKGVEL 846
K + + + + + + D V++ G N L G +
Sbjct: 589 KMIPGVSYQKIDDDG---LHVVINGETQVLAVDNVVICAGQEPNRALAQPLIDSGKTV 643
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 2e-06
Identities = 49/298 (16%), Positives = 85/298 (28%), Gaps = 83/298 (27%)
Query: 1071 VVGGGPSGATCVETLRQNGFTGKLYFITDE---NFLPYDRVKLSKQLDIKADSILLRTEE 1127
VVG GP+G G L+ E F ++KQ+ K + T
Sbjct: 378 VVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFN------IAKQIPGKEE--FYETLR 429
Query: 1128 FYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSID------FTKIYLATGSSPRT--ISQ 1179
+Y+ + + L+ ++ F + LA+G PRT I
Sbjct: 430 YYR---------------RMIEVTGVTLKLNHTVTADQLQAFDETILASGIVPRTPPIDG 474
Query: 1180 ADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVG---- 1235
D + + D + + V +IG IG + A + + +S +
Sbjct: 475 IDHPKVL----SYLDV--LRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFC 528
Query: 1236 ---------------------------------RGAVPFQESLGKEVGERITKLFESKGV 1262
R A + LGK G S+GV
Sbjct: 529 NEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGV 588
Query: 1263 KFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNT---NYLDGKGVEL 1317
K + + + + + + D V++ G N L G +
Sbjct: 589 KMIPGVSYQKIDDDG---LHVVINGETQVLAVDNVVICAGQEPNRALAQPLIDSGKTV 643
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} Length = 325 | Back alignment and structure |
|---|
Score = 49.4 bits (119), Expect = 5e-06
Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 18/144 (12%)
Query: 184 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERI--TKLFESKGVKF 241
VVVIG +E F VTV+ R +++L ++ + F + +KF
Sbjct: 154 KVVVIGGGDAAVEEGMFLTKFADEVTVIHR-----RDTLR---ANKVAQARAFANPKMKF 205
Query: 242 VMKANVSSFEKNEKNDVTAANLDNGTT-----IPADLVIVGIGTVLNTNYLDGKGVELNG 296
+ V + + V+ L N T + D V + IG V NT ++ V L
Sbjct: 206 IWDTAVEEIQGADS--VSGVKLRNLKTGEVSELATDGVFIFIGHVPNTAFVKDT-VSLRD 262
Query: 297 QKAVVVNEYLETNVPGVYAGGDIA 320
V V + + TN+P ++A GD++
Sbjct: 263 DGYVDVRDEIYTNIPMLFAAGDVS 286
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} Length = 325 | Back alignment and structure |
|---|
Score = 49.4 bits (119), Expect = 5e-06
Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 18/144 (12%)
Query: 736 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERI--TKLFESKGVKF 793
VVVIG +E F VTV+ R +++L ++ + F + +KF
Sbjct: 154 KVVVIGGGDAAVEEGMFLTKFADEVTVIHR-----RDTLR---ANKVAQARAFANPKMKF 205
Query: 794 VMKANVSSFEKNEKNDVTAANLDNGTT-----IPADLVIVGIGTVLNTNYLDGKGVELNG 848
+ V + + V+ L N T + D V + IG V NT ++ V L
Sbjct: 206 IWDTAVEEIQGADS--VSGVKLRNLKTGEVSELATDGVFIFIGHVPNTAFVKDT-VSLRD 262
Query: 849 QKAVVVNEYLETNVPGVYAGGDIA 872
V V + + TN+P ++A GD++
Sbjct: 263 DGYVDVRDEIYTNIPMLFAAGDVS 286
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} Length = 325 | Back alignment and structure |
|---|
Score = 49.4 bits (119), Expect = 5e-06
Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 18/144 (12%)
Query: 1207 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERI--TKLFESKGVKF 1264
VVVIG +E F VTV+ R +++L ++ + F + +KF
Sbjct: 154 KVVVIGGGDAAVEEGMFLTKFADEVTVIHR-----RDTLR---ANKVAQARAFANPKMKF 205
Query: 1265 VMKANVSSFEKNEKNDVTAANLDNGTT-----IPADLVIVGIGTVLNTNYLDGKGVELNG 1319
+ V + + V+ L N T + D V + IG V NT ++ V L
Sbjct: 206 IWDTAVEEIQGADS--VSGVKLRNLKTGEVSELATDGVFIFIGHVPNTAFVKDT-VSLRD 262
Query: 1320 QKAVVVNEYLETNVPGVYAGGDIA 1343
V V + + TN+P ++A GD++
Sbjct: 263 DGYVDVRDEIYTNIPMLFAAGDVS 286
|
| >3gcf_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske oxygenase, 2Fe-2S, electron transfer, oxidoreductase; 2.30A {Nocardioides aromaticivorans} Length = 394 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 5e-06
Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 11/73 (15%)
Query: 967 DPLAAQFAERNI---------YAVGTKCSHYGAPLVKGSLG--DGRVRCPWHGACFNIAT 1015
+ +A + A+ C+H G P K L G V C +HG +++
Sbjct: 48 EFVAVTMLGEKVLLTRAKGEVKAIADGCAHRGVPFSKEPLCFKAGTVSCWYHGWTYDLDD 107
Query: 1016 GDIEDFPGMDSLP 1028
G + D P
Sbjct: 108 GRLVDVLTSPGSP 120
|
| >3gcf_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske oxygenase, 2Fe-2S, electron transfer, oxidoreductase; 2.30A {Nocardioides aromaticivorans} Length = 394 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 8e-06
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 506 NIYAVGTKCSHYGAPLVKGSLG--DGRVRCPWHGACFNIATGDIEDFPGMDSLP 557
+ A+ C+H G P K L G V C +HG +++ G + D P
Sbjct: 67 EVKAIADGCAHRGVPFSKEPLCFKAGTVSCWYHGWTYDLDDGRLVDVLTSPGSP 120
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} Length = 315 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 5e-06
Identities = 22/146 (15%), Positives = 54/146 (36%), Gaps = 19/146 (13%)
Query: 185 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERIT--KLFESKGVKFV 242
V V+G +E A + A+ + ++ R ++ T K+ +++ ++ +
Sbjct: 150 VAVLGGGDTALEEALYLANICSKIYLIHR-----RDEFR---AAPSTVEKVKKNEKIELI 201
Query: 243 MKANVSSFEKNEKNDVTAANLDNGT----TIPADLVIVGIGTVLNTNYLDGKG----VEL 294
A+V ++ V + + + +G + L +
Sbjct: 202 TSASVDEVYGDKMG-VAGVKVKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNM 260
Query: 295 NGQKAVVVNEYLETNVPGVYAGGDIA 320
V V+ ++T+V G++A GD+
Sbjct: 261 EEGGQVSVDLKMQTSVAGLFAAGDLR 286
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} Length = 315 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 5e-06
Identities = 22/146 (15%), Positives = 54/146 (36%), Gaps = 19/146 (13%)
Query: 737 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERIT--KLFESKGVKFV 794
V V+G +E A + A+ + ++ R ++ T K+ +++ ++ +
Sbjct: 150 VAVLGGGDTALEEALYLANICSKIYLIHR-----RDEFR---AAPSTVEKVKKNEKIELI 201
Query: 795 MKANVSSFEKNEKNDVTAANLDNGT----TIPADLVIVGIGTVLNTNYLDGKG----VEL 846
A+V ++ V + + + +G + L +
Sbjct: 202 TSASVDEVYGDKMG-VAGVKVKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNM 260
Query: 847 NGQKAVVVNEYLETNVPGVYAGGDIA 872
V V+ ++T+V G++A GD+
Sbjct: 261 EEGGQVSVDLKMQTSVAGLFAAGDLR 286
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} Length = 315 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 5e-06
Identities = 22/146 (15%), Positives = 54/146 (36%), Gaps = 19/146 (13%)
Query: 1208 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERIT--KLFESKGVKFV 1265
V V+G +E A + A+ + ++ R ++ T K+ +++ ++ +
Sbjct: 150 VAVLGGGDTALEEALYLANICSKIYLIHR-----RDEFR---AAPSTVEKVKKNEKIELI 201
Query: 1266 MKANVSSFEKNEKNDVTAANLDNGT----TIPADLVIVGIGTVLNTNYLDGKG----VEL 1317
A+V ++ V + + + +G + L +
Sbjct: 202 TSASVDEVYGDKMG-VAGVKVKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNM 260
Query: 1318 NGQKAVVVNEYLETNVPGVYAGGDIA 1343
V V+ ++T+V G++A GD+
Sbjct: 261 EEGGQVSVDLKMQTSVAGLFAAGDLR 286
|
| >2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2 d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A* Length = 392 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 8e-06
Identities = 11/73 (15%), Positives = 21/73 (28%), Gaps = 11/73 (15%)
Query: 967 DPLAAQFAERNI---------YAVGTKCSHYGAPLVKG--SLGDGRVRCPWHGACFNIAT 1015
+P + N+ Y + +C H G L + C +H +
Sbjct: 42 EPKTLKLLGENLLVNRIDGKLYCLKDRCLHRGVQLSVKVECKTKSTITCWYHAWTYRWED 101
Query: 1016 GDIEDFPGMDSLP 1028
G + D +
Sbjct: 102 GVLCDILTNPTSA 114
|
| >2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2 d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A* Length = 392 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 9e-06
Identities = 9/54 (16%), Positives = 17/54 (31%), Gaps = 2/54 (3%)
Query: 506 NIYAVGTKCSHYGAPLVKG--SLGDGRVRCPWHGACFNIATGDIEDFPGMDSLP 557
+Y + +C H G L + C +H + G + D +
Sbjct: 61 KLYCLKDRCLHRGVQLSVKVECKTKSTITCWYHAWTYRWEDGVLCDILTNPTSA 114
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* Length = 311 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 1e-05
Identities = 30/148 (20%), Positives = 62/148 (41%), Gaps = 20/148 (13%)
Query: 184 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERIT--KLFESKGVKF 241
V V+G +E A + A+ K V ++ R ++ IT + ++F
Sbjct: 145 EVAVLGGGDTAVEEAIYLANICKKVYLIHR-----RDGFR---CAPITLEHAKNNDKIEF 196
Query: 242 VMKANVSSFEKNEKNDVTAANLDNGTT-----IPADLVIVGIGTVLNTNYLDGKG----V 292
+ V K + + V++ ++ N T + + +G +N L +
Sbjct: 197 LTPYVVEEI-KGDASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLC 255
Query: 293 ELNGQKAVVVNEYLETNVPGVYAGGDIA 320
+ + ++VV+ ++TNV G++A GDI
Sbjct: 256 KCDEYGSIVVDFSMKTNVQGLFAAGDIR 283
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* Length = 311 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 1e-05
Identities = 30/148 (20%), Positives = 62/148 (41%), Gaps = 20/148 (13%)
Query: 736 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERIT--KLFESKGVKF 793
V V+G +E A + A+ K V ++ R ++ IT + ++F
Sbjct: 145 EVAVLGGGDTAVEEAIYLANICKKVYLIHR-----RDGFR---CAPITLEHAKNNDKIEF 196
Query: 794 VMKANVSSFEKNEKNDVTAANLDNGTT-----IPADLVIVGIGTVLNTNYLDGKG----V 844
+ V K + + V++ ++ N T + + +G +N L +
Sbjct: 197 LTPYVVEEI-KGDASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLC 255
Query: 845 ELNGQKAVVVNEYLETNVPGVYAGGDIA 872
+ + ++VV+ ++TNV G++A GDI
Sbjct: 256 KCDEYGSIVVDFSMKTNVQGLFAAGDIR 283
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* Length = 311 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 1e-05
Identities = 30/148 (20%), Positives = 62/148 (41%), Gaps = 20/148 (13%)
Query: 1207 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERIT--KLFESKGVKF 1264
V V+G +E A + A+ K V ++ R ++ IT + ++F
Sbjct: 145 EVAVLGGGDTAVEEAIYLANICKKVYLIHR-----RDGFR---CAPITLEHAKNNDKIEF 196
Query: 1265 VMKANVSSFEKNEKNDVTAANLDNGTT-----IPADLVIVGIGTVLNTNYLDGKG----V 1315
+ V K + + V++ ++ N T + + +G +N L +
Sbjct: 197 LTPYVVEEI-KGDASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLC 255
Query: 1316 ELNGQKAVVVNEYLETNVPGVYAGGDIA 1343
+ + ++VV+ ++TNV G++A GDI
Sbjct: 256 KCDEYGSIVVDFSMKTNVQGLFAAGDIR 283
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 2e-05
Identities = 26/137 (18%), Positives = 52/137 (37%), Gaps = 18/137 (13%)
Query: 184 NVVVIGSSFIGMEAAAFCASKVKS---VTVVGRGA----------VPFQESLGKEVGERI 230
+VV++G+ GM AA + S VT++ V ++ I
Sbjct: 6 HVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPI 65
Query: 231 TKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGK 290
E KG+ F+ + + E ++T L +G T+ D +++ G L + G
Sbjct: 66 RHYVERKGIHFI-AQSAEQIDA-EAQNIT---LADGNTVHYDYLMIATGPKLAFENVPGS 120
Query: 291 GVELNGQKAVVVNEYLE 307
+++ ++ E
Sbjct: 121 DPHEGPVQSICTVDHAE 137
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 2e-05
Identities = 26/137 (18%), Positives = 52/137 (37%), Gaps = 18/137 (13%)
Query: 736 NVVVIGSSFIGMEAAAFCASKVKS---VTVVGRGA----------VPFQESLGKEVGERI 782
+VV++G+ GM AA + S VT++ V ++ I
Sbjct: 6 HVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPI 65
Query: 783 TKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGK 842
E KG+ F+ + + E ++T L +G T+ D +++ G L + G
Sbjct: 66 RHYVERKGIHFI-AQSAEQIDA-EAQNIT---LADGNTVHYDYLMIATGPKLAFENVPGS 120
Query: 843 GVELNGQKAVVVNEYLE 859
+++ ++ E
Sbjct: 121 DPHEGPVQSICTVDHAE 137
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 2e-05
Identities = 26/137 (18%), Positives = 52/137 (37%), Gaps = 18/137 (13%)
Query: 1207 NVVVIGSSFIGMEAAAFCASKVKS---VTVVGRGA----------VPFQESLGKEVGERI 1253
+VV++G+ GM AA + S VT++ V ++ I
Sbjct: 6 HVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPI 65
Query: 1254 TKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGK 1313
E KG+ F+ + + E ++T L +G T+ D +++ G L + G
Sbjct: 66 RHYVERKGIHFI-AQSAEQIDA-EAQNIT---LADGNTVHYDYLMIATGPKLAFENVPGS 120
Query: 1314 GVELNGQKAVVVNEYLE 1330
+++ ++ E
Sbjct: 121 DPHEGPVQSICTVDHAE 137
|
| >1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component; rieske center, oxygen binding/activation, substrate bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2 d.129.3.3 PDB: 1z02_A 1z03_A* Length = 446 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 3e-05
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 503 TTSNIYAVGTKCSHYGAPLVKG--SLGDGRVRCPWHGACFNIATGDIEDFPGM 553
++A+ +C H G L + + C +HG F++ TG +
Sbjct: 73 VNGKVFALKDQCLHRGVRLSEKPTCFTKSTISCWYHGFTFDLETGKLVTIVAN 125
|
| >1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component; rieske center, oxygen binding/activation, substrate bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2 d.129.3.3 PDB: 1z02_A 1z03_A* Length = 446 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 3e-05
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 977 NIYAVGTKCSHYGAPLVKG--SLGDGRVRCPWHGACFNIATGDIEDFPGM 1024
++A+ +C H G L + + C +HG F++ TG +
Sbjct: 76 KVFALKDQCLHRGVRLSEKPTCFTKSTISCWYHGFTFDLETGKLVTIVAN 125
|
| >3gkq_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske nonheme iron oxygenase, electron transfer, putidaredoxin-type ferredoxin; 2.10A {Sphingomonas} Length = 389 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 3e-05
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 506 NIYAVGTKCSHYGAPLVKG--SLGDGRVRCPWHGACFNIATGDIEDFPGMD 554
++A+ +C H G L + C +HG + G + D
Sbjct: 64 VVHAIADRCLHRGVTLSDKVECYSKATISCWYHGWTYRWDNGKLVDILTNP 114
|
| >3gkq_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske nonheme iron oxygenase, electron transfer, putidaredoxin-type ferredoxin; 2.10A {Sphingomonas} Length = 389 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 3e-05
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 977 NIYAVGTKCSHYGAPLVKG--SLGDGRVRCPWHGACFNIATGDIEDFPGMD 1025
++A+ +C H G L + C +HG + G + D
Sbjct: 64 VVHAIADRCLHRGVTLSDKVECYSKATISCWYHGWTYRWDNGKLVDILTNP 114
|
| >2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A {Mycobacterium tuberculosis} Length = 386 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 4e-05
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 514 CSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLP 557
C H G L +G++ V CP+H + G + P P
Sbjct: 67 CRHMGGDLSEGTVKGDEVACPFHDWRWG-GDGRCKLVPYARRTP 109
|
| >2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A {Mycobacterium tuberculosis} Length = 386 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 4e-05
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 985 CSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLP 1028
C H G L +G++ V CP+H + G + P P
Sbjct: 67 CRHMGGDLSEGTVKGDEVACPFHDWRWG-GDGRCKLVPYARRTP 109
|
| >1g8k_B Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.33.1.1 PDB: 1g8j_B* Length = 133 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 1e-04
Identities = 20/107 (18%), Positives = 31/107 (28%), Gaps = 4/107 (3%)
Query: 944 EALKFTAYYSNADKVLAILTVGMDPLAAQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVR 1003
E + FT Y + + +G + +I A C+H G P
Sbjct: 21 EPVSFT--YPDTSSPCVAVKLGAPVPGGVGPDDDIVAYSVLCTHMGCP-TSYDSSSKTFS 77
Query: 1004 CPWHGACFNIA-TGDIEDFPGMDSLPCYKVTIQNDDSVVVQARKDEL 1049
CP H F+ G + LP + + D L
Sbjct: 78 CPCHFTEFDAEKAGQMICGEATADLPRVLLRYDAASDALTAVGVDGL 124
|
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* Length = 456 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 5e-04
Identities = 12/55 (21%), Positives = 18/55 (32%), Gaps = 5/55 (9%)
Query: 267 TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEY-LETNVPGVYAGGDIA 320
+PA LV+ +G G+ + Q + N P Y G I
Sbjct: 311 EELPAQLVVRSVGYRGVPT----PGLPFDDQSGTIPNVGGRINGSPNEYVVGWIK 361
|
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* Length = 456 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 5e-04
Identities = 12/55 (21%), Positives = 18/55 (32%), Gaps = 5/55 (9%)
Query: 819 TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEY-LETNVPGVYAGGDIA 872
+PA LV+ +G G+ + Q + N P Y G I
Sbjct: 311 EELPAQLVVRSVGYRGVPT----PGLPFDDQSGTIPNVGGRINGSPNEYVVGWIK 361
|
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* Length = 456 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 5e-04
Identities = 12/55 (21%), Positives = 18/55 (32%), Gaps = 5/55 (9%)
Query: 1290 TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEY-LETNVPGVYAGGDIA 1343
+PA LV+ +G G+ + Q + N P Y G I
Sbjct: 311 EELPAQLVVRSVGYRGVPT----PGLPFDDQSGTIPNVGGRINGSPNEYVVGWIK 361
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1466 | |||
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 100.0 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 100.0 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 100.0 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 100.0 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 100.0 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 100.0 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 100.0 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 100.0 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 100.0 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 100.0 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 100.0 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 100.0 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 100.0 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 100.0 | |
| 4eqs_A | 437 | Coenzyme A disulfide reductase; oxidoreductase; HE | 100.0 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 100.0 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 100.0 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 100.0 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 100.0 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 100.0 | |
| 4eqs_A | 437 | Coenzyme A disulfide reductase; oxidoreductase; HE | 100.0 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 100.0 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 100.0 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 100.0 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 100.0 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 100.0 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 100.0 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 100.0 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 100.0 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 100.0 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 100.0 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 100.0 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 100.0 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 100.0 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 100.0 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 100.0 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 100.0 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 100.0 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 100.0 | |
| 4b1b_A | 542 | TRXR, thioredoxin reductase; oxidoreductase, FAD, | 100.0 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 100.0 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 100.0 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 100.0 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 100.0 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 100.0 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 100.0 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 100.0 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 100.0 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 100.0 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 100.0 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 100.0 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 100.0 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 100.0 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 100.0 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 100.0 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 100.0 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 100.0 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 100.0 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 100.0 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 100.0 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 100.0 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 100.0 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 100.0 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 100.0 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 100.0 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 100.0 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 100.0 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 100.0 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 100.0 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 100.0 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 100.0 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 100.0 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 100.0 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 100.0 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 100.0 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 100.0 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 100.0 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 100.0 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 100.0 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 100.0 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 100.0 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 100.0 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 100.0 | |
| 4g6h_A | 502 | Rotenone-insensitive NADH-ubiquinone oxidoreducta | 100.0 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 100.0 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 100.0 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 100.0 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 100.0 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 100.0 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 100.0 | |
| 4g6h_A | 502 | Rotenone-insensitive NADH-ubiquinone oxidoreducta | 100.0 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 100.0 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 100.0 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 100.0 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 100.0 | |
| 4b1b_A | 542 | TRXR, thioredoxin reductase; oxidoreductase, FAD, | 100.0 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 100.0 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 100.0 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 100.0 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 100.0 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 100.0 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 99.98 | |
| 3hyw_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 99.98 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 99.97 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 99.97 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 99.97 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 99.97 | |
| 4gcm_A | 312 | TRXR, thioredoxin reductase; FAD/NAD-linked reduct | 99.97 | |
| 4a5l_A | 314 | Thioredoxin reductase; oxidoreductase, redox metab | 99.97 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 99.97 | |
| 3hyw_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 99.97 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 99.97 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 99.97 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 99.97 | |
| 3vrd_B | 401 | FCCB subunit, flavocytochrome C flavin subunit; su | 99.97 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 99.97 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 99.97 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 99.97 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 99.97 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 99.97 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 99.97 | |
| 4gcm_A | 312 | TRXR, thioredoxin reductase; FAD/NAD-linked reduct | 99.97 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 99.97 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 99.97 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 99.97 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 99.97 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 99.97 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 99.97 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 99.97 | |
| 4a5l_A | 314 | Thioredoxin reductase; oxidoreductase, redox metab | 99.97 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 99.97 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 99.97 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 99.97 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 99.97 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 99.97 | |
| 1trb_A | 320 | Thioredoxin reductase; oxidoreductase(flavoenzyme) | 99.97 | |
| 3vrd_B | 401 | FCCB subunit, flavocytochrome C flavin subunit; su | 99.97 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 99.97 | |
| 1trb_A | 320 | Thioredoxin reductase; oxidoreductase(flavoenzyme) | 99.97 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 99.97 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 99.97 | |
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 99.96 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 99.96 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 99.96 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 99.96 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 99.96 | |
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 99.96 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 99.96 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 99.96 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 99.96 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 99.96 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 99.96 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 99.96 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 99.95 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 99.95 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 99.95 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 99.95 | |
| 1cjc_A | 460 | Protein (adrenodoxin reductase); flavoenzyme, MAD | 99.95 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 99.95 | |
| 1cjc_A | 460 | Protein (adrenodoxin reductase); flavoenzyme, MAD | 99.95 | |
| 2gag_A | 965 | Heterotetrameric sarcosine oxidase alpha-subunit; | 99.95 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 99.94 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 99.94 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 99.94 | |
| 1lqt_A | 456 | FPRA; NADP+ derivative, oxidoreductase, structural | 99.94 | |
| 1lqt_A | 456 | FPRA; NADP+ derivative, oxidoreductase, structural | 99.94 | |
| 2gag_A | 965 | Heterotetrameric sarcosine oxidase alpha-subunit; | 99.94 | |
| 1y56_A | 493 | Hypothetical protein PH1363; dehydrogenase, protei | 99.93 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 99.93 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 99.93 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 99.93 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 99.92 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 99.92 | |
| 1y56_A | 493 | Hypothetical protein PH1363; dehydrogenase, protei | 99.92 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 99.92 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 99.9 | |
| 3gwf_A | 540 | Cyclohexanone monooxygenase; flavoprotein biocatal | 99.89 | |
| 3gwf_A | 540 | Cyclohexanone monooxygenase; flavoprotein biocatal | 99.88 | |
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 99.87 | |
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 99.86 | |
| 4ap3_A | 549 | Steroid monooxygenase; oxidoreductase, baeyer-vill | 99.86 | |
| 4ap3_A | 549 | Steroid monooxygenase; oxidoreductase, baeyer-vill | 99.85 | |
| 1w4x_A | 542 | Phenylacetone monooxygenase; baeyer-villiger, FAD; | 99.83 | |
| 1w4x_A | 542 | Phenylacetone monooxygenase; baeyer-villiger, FAD; | 99.83 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 99.77 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 99.77 | |
| 4b63_A | 501 | L-ornithine N5 monooxygenase; oxidoreductase, side | 99.7 | |
| 4b63_A | 501 | L-ornithine N5 monooxygenase; oxidoreductase, side | 99.68 | |
| 3dqy_A | 106 | Toluene 1,2-dioxygenase system ferredoxin subunit; | 99.59 | |
| 2qpz_A | 103 | Naphthalene 1,2-dioxygenase system ferredoxin subu | 99.58 | |
| 2i7f_A | 108 | Ferredoxin component of dioxygenase; rieske ferred | 99.57 | |
| 3gce_A | 121 | Ferredoxin component of carbazole 1,9A- dioxygenas | 99.56 | |
| 2de6_D | 115 | Ferredoxin component of carbazole; electron transf | 99.55 | |
| 1fqt_A | 112 | Rieske-type ferredoxin of biphenyl dioxygenase; 2F | 99.54 | |
| 1vm9_A | 111 | Toluene-4-monooxygenase system protein C; structur | 99.53 | |
| 4aiv_A | 119 | Probable nitrite reductase [NAD(P)H] small subuni; | 99.53 | |
| 2e5v_A | 472 | L-aspartate oxidase; archaea, oxidoreductase; HET: | 99.49 | |
| 3c0d_A | 119 | Putative nitrite reductase NADPH (small subunit) o | 99.48 | |
| 2jo6_A | 113 | Nitrite reductase [NAD(P)H] small subunit; all bet | 99.47 | |
| 2e5v_A | 472 | L-aspartate oxidase; archaea, oxidoreductase; HET: | 99.46 | |
| 4aay_B | 175 | AROB; oxidoreductase, rieske, iron sulfur, molybdo | 99.44 | |
| 1rie_A | 129 | Rieske iron-sulfur protein; oxidoreductase, cytoch | 99.42 | |
| 3fpz_A | 326 | Thiazole biosynthetic enzyme; FAD, mitochondrion, | 99.42 | |
| 1g8k_B | 133 | Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, | 99.4 | |
| 2jza_A | 130 | Nitrite reductase [NAD(P)H] small subunit; ISP dom | 99.4 | |
| 1rfs_A | 139 | Rieske protein; iron-sulfur protein, electron tran | 99.39 | |
| 2cul_A | 232 | Glucose-inhibited division protein A-related PROT | 99.39 | |
| 3dqy_A | 106 | Toluene 1,2-dioxygenase system ferredoxin subunit; | 99.36 | |
| 3d89_A | 157 | Rieske domain-containing protein; CAsp target, rie | 99.35 | |
| 3azc_A | 133 | Cytochrome B6-F complex iron-sulfur subunit; riesk | 99.02 | |
| 2cul_A | 232 | Glucose-inhibited division protein A-related PROT | 99.34 | |
| 2qpz_A | 103 | Naphthalene 1,2-dioxygenase system ferredoxin subu | 99.33 | |
| 2i7f_A | 108 | Ferredoxin component of dioxygenase; rieske ferred | 99.32 | |
| 2de6_D | 115 | Ferredoxin component of carbazole; electron transf | 99.29 | |
| 3gce_A | 121 | Ferredoxin component of carbazole 1,9A- dioxygenas | 99.27 | |
| 1fqt_A | 112 | Rieske-type ferredoxin of biphenyl dioxygenase; 2F | 99.26 | |
| 2gqf_A | 401 | Hypothetical protein HI0933; structural genomics, | 99.26 | |
| 1vm9_A | 111 | Toluene-4-monooxygenase system protein C; structur | 99.26 | |
| 4aiv_A | 119 | Probable nitrite reductase [NAD(P)H] small subuni; | 99.24 | |
| 2nwf_A | 141 | Ubiquinol-cytochrome C reductase iron-sulfur SUBU; | 99.22 | |
| 1nyk_A | 165 | Rieske iron-sulfur protein; beta barrel, iron sulf | 99.22 | |
| 3c0d_A | 119 | Putative nitrite reductase NADPH (small subunit) o | 99.21 | |
| 1pp9_E | 196 | Ubiquinol-cytochrome C reductase iron-sulfur SUBU | 99.2 | |
| 2jo6_A | 113 | Nitrite reductase [NAD(P)H] small subunit; all bet | 99.18 | |
| 3fpz_A | 326 | Thiazole biosynthetic enzyme; FAD, mitochondrion, | 99.18 | |
| 1jm1_A | 204 | Rieske iron-sulfur protein SOXF; electron transpor | 99.16 | |
| 3gcf_A | 394 | Terminal oxygenase component of carbazole 1,9A- di | 99.16 | |
| 3gkq_A | 389 | Terminal oxygenase component of carbazole 1,9A- di | 99.15 | |
| 3gke_A | 349 | DDMC; rieske cluster, non-heme mononuclear iron, o | 99.15 | |
| 2qjy_C | 187 | Ubiquinol-cytochrome C reductase iron-sulfur SUBU; | 99.15 | |
| 2gqf_A | 401 | Hypothetical protein HI0933; structural genomics, | 99.13 | |
| 1vf5_D | 179 | Rieske iron-sulfur protein; photosynthesis, membra | 99.13 | |
| 4aay_B | 175 | AROB; oxidoreductase, rieske, iron sulfur, molybdo | 99.12 | |
| 3cx5_E | 185 | Cytochrome B-C1 complex subunit rieske, mitochondr | 99.1 | |
| 2zyl_A | 386 | Possible oxidoreductase; KSHA, cholesterol, rieske | 99.1 | |
| 2jza_A | 130 | Nitrite reductase [NAD(P)H] small subunit; ISP dom | 99.1 | |
| 1rie_A | 129 | Rieske iron-sulfur protein; oxidoreductase, cytoch | 99.09 | |
| 3vca_A | 412 | Ring-hydroxylating dioxygenase; rieske-type, monon | 99.04 | |
| 3n0q_A | 409 | Putative aromatic-ring hydroxylating dioxygenase; | 99.03 | |
| 2de6_A | 392 | Terminal oxygenase component of carbazole; electro | 99.0 | |
| 1g8k_B | 133 | Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, | 98.98 | |
| 1z01_A | 446 | 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygen | 98.98 | |
| 1rfs_A | 139 | Rieske protein; iron-sulfur protein, electron tran | 98.98 | |
| 2gbw_A | 454 | Biphenyl 2,3-dioxygenase alpha subunit; rieske oxy | 98.97 | |
| 3azc_A | 133 | Cytochrome B6-F complex iron-sulfur subunit; riesk | 98.51 | |
| 3d89_A | 157 | Rieske domain-containing protein; CAsp target, rie | 98.95 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 98.94 | |
| 2bmo_A | 447 | Oxygenase-alpha NBDO; nitrobenzene dioxygenase, ni | 98.92 | |
| 2zxi_A | 637 | TRNA uridine 5-carboxymethylaminomethyl modificat | 98.91 | |
| 1uli_A | 460 | Biphenyl dioxygenase large subunit; alpha3 BETA3 h | 98.89 | |
| 2nwf_A | 141 | Ubiquinol-cytochrome C reductase iron-sulfur SUBU; | 98.89 | |
| 3gzx_A | 457 | Biphenyl dioxygenase subunit alpha; rieskie, non-h | 98.83 | |
| 1nyk_A | 165 | Rieske iron-sulfur protein; beta barrel, iron sulf | 98.82 | |
| 2b1x_A | 470 | Naphthalene dioxygenase large subunit; rieske non- | 98.82 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 98.81 | |
| 1pp9_E | 196 | Ubiquinol-cytochrome C reductase iron-sulfur SUBU | 98.79 | |
| 1jm1_A | 204 | Rieske iron-sulfur protein SOXF; electron transpor | 98.79 | |
| 3gke_A | 349 | DDMC; rieske cluster, non-heme mononuclear iron, o | 98.75 | |
| 2qjy_C | 187 | Ubiquinol-cytochrome C reductase iron-sulfur SUBU; | 98.73 | |
| 3k7m_X | 431 | 6-hydroxy-L-nicotine oxidase; enantiomeric substra | 98.69 | |
| 3gcf_A | 394 | Terminal oxygenase component of carbazole 1,9A- di | 98.69 | |
| 2zxi_A | 637 | TRNA uridine 5-carboxymethylaminomethyl modificat | 98.68 | |
| 2zyl_A | 386 | Possible oxidoreductase; KSHA, cholesterol, rieske | 98.66 | |
| 3gkq_A | 389 | Terminal oxygenase component of carbazole 1,9A- di | 98.66 | |
| 3ces_A | 651 | MNMG, tRNA uridine 5-carboxymethylaminomethyl modi | 98.65 | |
| 1vf5_D | 179 | Rieske iron-sulfur protein; photosynthesis, membra | 98.65 | |
| 3cx5_E | 185 | Cytochrome B-C1 complex subunit rieske, mitochondr | 98.62 | |
| 3k7m_X | 431 | 6-hydroxy-L-nicotine oxidase; enantiomeric substra | 98.62 | |
| 3vca_A | 412 | Ring-hydroxylating dioxygenase; rieske-type, monon | 98.61 | |
| 3n0q_A | 409 | Putative aromatic-ring hydroxylating dioxygenase; | 98.57 | |
| 3pl8_A | 623 | Pyranose 2-oxidase; substrate complex, H167A mutan | 98.54 | |
| 2bry_A | 497 | NEDD9 interacting protein with calponin homology a | 98.52 | |
| 3ces_A | 651 | MNMG, tRNA uridine 5-carboxymethylaminomethyl modi | 98.51 | |
| 2de6_A | 392 | Terminal oxygenase component of carbazole; electro | 98.46 | |
| 1z01_A | 446 | 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygen | 98.45 | |
| 2gbw_A | 454 | Biphenyl 2,3-dioxygenase alpha subunit; rieske oxy | 98.44 | |
| 2bry_A | 497 | NEDD9 interacting protein with calponin homology a | 98.44 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 98.41 | |
| 1kf6_A | 602 | Fumarate reductase flavoprotein; respiration, fuma | 98.39 | |
| 2e4g_A | 550 | Tryptophan halogenase; flavin-binding, rebeccamyci | 98.39 | |
| 1kf6_A | 602 | Fumarate reductase flavoprotein; respiration, fuma | 98.39 | |
| 3cp8_A | 641 | TRNA uridine 5-carboxymethylaminomethyl modificati | 98.38 | |
| 2bmo_A | 447 | Oxygenase-alpha NBDO; nitrobenzene dioxygenase, ni | 98.36 | |
| 3nlc_A | 549 | Uncharacterized protein VP0956; FAD-binding protei | 98.34 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 98.34 | |
| 1uli_A | 460 | Biphenyl dioxygenase large subunit; alpha3 BETA3 h | 98.33 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 98.33 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 98.27 | |
| 3cp8_A | 641 | TRNA uridine 5-carboxymethylaminomethyl modificati | 98.24 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 98.24 | |
| 1chu_A | 540 | Protein (L-aspartate oxidase); flavoenzyme, NAD bi | 98.23 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 98.22 | |
| 1chu_A | 540 | Protein (L-aspartate oxidase); flavoenzyme, NAD bi | 98.21 | |
| 3nlc_A | 549 | Uncharacterized protein VP0956; FAD-binding protei | 98.21 | |
| 2b1x_A | 470 | Naphthalene dioxygenase large subunit; rieske non- | 98.2 | |
| 3gzx_A | 457 | Biphenyl dioxygenase subunit alpha; rieskie, non-h | 98.2 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 98.18 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 98.18 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 98.14 | |
| 1s3e_A | 520 | Amine oxidase [flavin-containing] B; human monoami | 98.14 | |
| 2gag_B | 405 | Heterotetrameric sarcosine oxidase beta-subunit; f | 98.12 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 98.12 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 98.12 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 98.11 | |
| 2e4g_A | 550 | Tryptophan halogenase; flavin-binding, rebeccamyci | 98.08 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 98.07 | |
| 3pl8_A | 623 | Pyranose 2-oxidase; substrate complex, H167A mutan | 98.06 | |
| 3nyc_A | 381 | D-arginine dehydrogenase; FAD, imino-arginine, oxi | 98.03 | |
| 2gag_B | 405 | Heterotetrameric sarcosine oxidase beta-subunit; f | 98.01 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 98.01 | |
| 2gf3_A | 389 | MSOX, monomeric sarcosine oxidase; flavoprotein ox | 98.0 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 98.0 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 98.0 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 97.98 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 97.98 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 97.97 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 97.97 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 97.97 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 97.96 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 97.96 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 97.95 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 97.95 | |
| 1s3e_A | 520 | Amine oxidase [flavin-containing] B; human monoami | 97.95 | |
| 3fmw_A | 570 | Oxygenase; mithramycin, baeyer-villiger, flavin bi | 97.95 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 97.94 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 97.93 | |
| 3fmw_A | 570 | Oxygenase; mithramycin, baeyer-villiger, flavin bi | 97.93 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 97.92 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 97.92 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 97.92 | |
| 3axb_A | 448 | Putative oxidoreductase; dinucleotide-binding fold | 97.91 | |
| 3ihg_A | 535 | RDME; flavoenzyme, anthracycline, polyketide biosy | 97.91 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 97.91 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 97.9 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 97.9 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 97.9 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 97.89 | |
| 1qo8_A | 566 | Flavocytochrome C3 fumarate reductase; oxidoreduct | 97.88 | |
| 2qa2_A | 499 | CABE, polyketide oxygenase CABE; FAD, angucycline, | 97.87 | |
| 1k0i_A | 394 | P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h | 97.86 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 97.86 | |
| 2qa1_A | 500 | PGAE, polyketide oxygenase PGAE; FAD, angucycline, | 97.85 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 97.84 | |
| 2gf3_A | 389 | MSOX, monomeric sarcosine oxidase; flavoprotein ox | 97.83 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 97.83 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 97.81 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 97.8 | |
| 3ihg_A | 535 | RDME; flavoenzyme, anthracycline, polyketide biosy | 97.79 | |
| 2gmh_A | 584 | Electron transfer flavoprotein-ubiquinone oxidored | 97.79 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 97.79 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 97.78 | |
| 3axb_A | 448 | Putative oxidoreductase; dinucleotide-binding fold | 97.71 | |
| 2qa2_A | 499 | CABE, polyketide oxygenase CABE; FAD, angucycline, | 97.7 | |
| 3nyc_A | 381 | D-arginine dehydrogenase; FAD, imino-arginine, oxi | 97.7 | |
| 2qa1_A | 500 | PGAE, polyketide oxygenase PGAE; FAD, angucycline, | 97.7 | |
| 3jsk_A | 344 | Cypbp37 protein; octameric thiazole synthase, bios | 97.7 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 97.68 | |
| 2uzz_A | 372 | N-methyl-L-tryptophan oxidase; N-methyltryptophan | 97.67 | |
| 1d4d_A | 572 | Flavocytochrome C fumarate reductase; oxidoreducta | 97.65 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 97.63 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 97.63 | |
| 2pyx_A | 526 | Tryptophan halogenase; structural genomics, JOI fo | 97.63 | |
| 1pj5_A | 830 | N,N-dimethylglycine oxidase; channelling, FAD bind | 97.62 | |
| 1qo8_A | 566 | Flavocytochrome C3 fumarate reductase; oxidoreduct | 97.6 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 97.59 | |
| 3nks_A | 477 | Protoporphyrinogen oxidase; FAD containing protein | 97.59 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 97.59 | |
| 2weu_A | 511 | Tryptophan 5-halogenase; regioselectivity, antifun | 97.59 | |
| 3c4n_A | 405 | Uncharacterized protein DR_0571; alpha-beta protei | 97.57 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 97.57 | |
| 2pyx_A | 526 | Tryptophan halogenase; structural genomics, JOI fo | 97.54 | |
| 3jsk_A | 344 | Cypbp37 protein; octameric thiazole synthase, bios | 97.53 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 97.53 | |
| 4at0_A | 510 | 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore | 97.51 | |
| 1k0i_A | 394 | P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h | 97.5 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 97.5 | |
| 1pj5_A | 830 | N,N-dimethylglycine oxidase; channelling, FAD bind | 97.49 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 97.47 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 97.47 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 97.46 | |
| 3da1_A | 561 | Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9 | 97.45 | |
| 3da1_A | 561 | Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9 | 97.42 | |
| 2qcu_A | 501 | Aerobic glycerol-3-phosphate dehydrogenase; glycer | 97.41 | |
| 2weu_A | 511 | Tryptophan 5-halogenase; regioselectivity, antifun | 97.4 | |
| 2dkh_A | 639 | 3-hydroxybenzoate hydroxylase; flavoprotein, monoo | 97.37 | |
| 1d4d_A | 572 | Flavocytochrome C fumarate reductase; oxidoreducta | 97.35 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 97.33 | |
| 3c4a_A | 381 | Probable tryptophan hydroxylase VIOD; alpha-beta p | 97.31 | |
| 2r0c_A | 549 | REBC; flavin adenine dinucleotide, monooxygenase, | 97.3 | |
| 2gmh_A | 584 | Electron transfer flavoprotein-ubiquinone oxidored | 97.29 | |
| 2qcu_A | 501 | Aerobic glycerol-3-phosphate dehydrogenase; glycer | 97.24 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 97.23 | |
| 2r0c_A | 549 | REBC; flavin adenine dinucleotide, monooxygenase, | 97.23 | |
| 4gut_A | 776 | Lysine-specific histone demethylase 1B; histone de | 97.18 | |
| 2aqj_A | 538 | Tryptophan halogenase, pRNA; flavin-dependent halo | 97.17 | |
| 2dkh_A | 639 | 3-hydroxybenzoate hydroxylase; flavoprotein, monoo | 97.16 | |
| 2wdq_A | 588 | Succinate dehydrogenase flavoprotein subunit; succ | 97.15 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 97.12 | |
| 2gjc_A | 326 | Thiazole biosynthetic enzyme, mitochondrial; gluta | 97.11 | |
| 2uzz_A | 372 | N-methyl-L-tryptophan oxidase; N-methyltryptophan | 97.09 | |
| 3c4a_A | 381 | Probable tryptophan hydroxylase VIOD; alpha-beta p | 97.06 | |
| 2h88_A | 621 | Succinate dehydrogenase flavoprotein subunit; comp | 97.06 | |
| 2gjc_A | 326 | Thiazole biosynthetic enzyme, mitochondrial; gluta | 97.01 | |
| 4at0_A | 510 | 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore | 96.99 | |
| 2aqj_A | 538 | Tryptophan halogenase, pRNA; flavin-dependent halo | 96.98 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 96.96 | |
| 3c4n_A | 405 | Uncharacterized protein DR_0571; alpha-beta protei | 96.96 | |
| 2rgh_A | 571 | Alpha-glycerophosphate oxidase; flavoprotein oxida | 96.89 | |
| 3gyx_A | 662 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 96.75 | |
| 1pn0_A | 665 | Phenol 2-monooxygenase; two dimers, TLS refinement | 96.7 | |
| 4gde_A | 513 | UDP-galactopyranose mutase; flavin adenine dinucle | 96.6 | |
| 1jnr_A | 643 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 96.49 | |
| 2e1m_A | 376 | L-glutamate oxidase; L-amino acid oxidase, FAD, L- | 96.43 | |
| 4gde_A | 513 | UDP-galactopyranose mutase; flavin adenine dinucle | 96.35 | |
| 2bcg_G | 453 | Secretory pathway GDP dissociation inhibitor; RABG | 96.34 | |
| 2e1m_A | 376 | L-glutamate oxidase; L-amino acid oxidase, FAD, L- | 96.31 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 96.3 | |
| 2b9w_A | 424 | Putative aminooxidase; isomerase, conjugated linol | 96.3 | |
| 2bcg_G | 453 | Secretory pathway GDP dissociation inhibitor; RABG | 96.25 | |
| 3nks_A | 477 | Protoporphyrinogen oxidase; FAD containing protein | 96.23 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 96.19 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 96.18 | |
| 1pn0_A | 665 | Phenol 2-monooxygenase; two dimers, TLS refinement | 96.13 | |
| 3hdq_A | 397 | UDP-galactopyranose mutase; substrate and inhibito | 96.1 | |
| 2b9w_A | 424 | Putative aminooxidase; isomerase, conjugated linol | 96.08 | |
| 1rsg_A | 516 | FMS1 protein; FAD binding motif, oxidoreductase; H | 96.07 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 96.07 | |
| 2jae_A | 489 | L-amino acid oxidase; oxidoreductase, dimerisation | 96.04 | |
| 2rgh_A | 571 | Alpha-glycerophosphate oxidase; flavoprotein oxida | 96.03 | |
| 1v0j_A | 399 | UDP-galactopyranose mutase; flavoprotein, isomeras | 96.03 | |
| 2wdq_A | 588 | Succinate dehydrogenase flavoprotein subunit; succ | 96.02 | |
| 1v0j_A | 399 | UDP-galactopyranose mutase; flavoprotein, isomeras | 96.01 | |
| 3g5s_A | 443 | Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy | 95.99 | |
| 3i6d_A | 470 | Protoporphyrinogen oxidase; protein-inhibitor comp | 95.95 | |
| 1rsg_A | 516 | FMS1 protein; FAD binding motif, oxidoreductase; H | 95.92 | |
| 2jae_A | 489 | L-amino acid oxidase; oxidoreductase, dimerisation | 95.89 | |
| 2ivd_A | 478 | PPO, PPOX, protoporphyrinogen oxidase; porphyrin b | 95.87 | |
| 3hdq_A | 397 | UDP-galactopyranose mutase; substrate and inhibito | 95.85 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 95.85 | |
| 2vvm_A | 495 | Monoamine oxidase N; FAD, peroxisome, flavoprotein | 95.84 | |
| 3i6d_A | 470 | Protoporphyrinogen oxidase; protein-inhibitor comp | 95.83 | |
| 2h88_A | 621 | Succinate dehydrogenase flavoprotein subunit; comp | 95.82 | |
| 2bs2_A | 660 | Quinol-fumarate reductase flavoprotein subunit A; | 95.72 | |
| 2yg5_A | 453 | Putrescine oxidase; oxidoreductase, flavin; HET: F | 95.69 | |
| 2ivd_A | 478 | PPO, PPOX, protoporphyrinogen oxidase; porphyrin b | 95.66 | |
| 2xag_A | 852 | Lysine-specific histone demethylase 1; amine oxida | 95.63 | |
| 1i8t_A | 367 | UDP-galactopyranose mutase; rossman fold, FAD, con | 95.61 | |
| 2vvm_A | 495 | Monoamine oxidase N; FAD, peroxisome, flavoprotein | 95.6 | |
| 2z3y_A | 662 | Lysine-specific histone demethylase 1; chromatin, | 95.6 | |
| 3g5s_A | 443 | Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy | 95.53 | |
| 1sez_A | 504 | Protoporphyrinogen oxidase, mitochondrial; FAD-bin | 95.53 | |
| 1i8t_A | 367 | UDP-galactopyranose mutase; rossman fold, FAD, con | 95.46 | |
| 2yg5_A | 453 | Putrescine oxidase; oxidoreductase, flavin; HET: F | 95.46 | |
| 4dsg_A | 484 | UDP-galactopyranose mutase; rossmann fold, flavin | 95.45 | |
| 3lov_A | 475 | Protoporphyrinogen oxidase; structural genomics, J | 95.45 | |
| 3lov_A | 475 | Protoporphyrinogen oxidase; structural genomics, J | 95.44 | |
| 2iid_A | 498 | L-amino-acid oxidase; flavoenzyme, FAD binding dom | 95.4 | |
| 1sez_A | 504 | Protoporphyrinogen oxidase, mitochondrial; FAD-bin | 95.38 | |
| 4dsg_A | 484 | UDP-galactopyranose mutase; rossmann fold, flavin | 95.29 | |
| 2bi7_A | 384 | UDP-galactopyranose mutase; FAD, flavoprotein, iso | 95.29 | |
| 3g3e_A | 351 | D-amino-acid oxidase; FAD, flavoprotein, oxidoredu | 95.24 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 95.19 | |
| 2iid_A | 498 | L-amino-acid oxidase; flavoenzyme, FAD binding dom | 95.19 | |
| 2bi7_A | 384 | UDP-galactopyranose mutase; FAD, flavoprotein, iso | 95.12 | |
| 2xag_A | 852 | Lysine-specific histone demethylase 1; amine oxida | 95.1 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 95.1 | |
| 3g3e_A | 351 | D-amino-acid oxidase; FAD, flavoprotein, oxidoredu | 95.09 | |
| 3gyx_A | 662 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 95.08 | |
| 2z3y_A | 662 | Lysine-specific histone demethylase 1; chromatin, | 95.05 | |
| 1d5t_A | 433 | Guanine nucleotide dissociation inhibitor; ultra-h | 95.01 | |
| 2bs2_A | 660 | Quinol-fumarate reductase flavoprotein subunit A; | 94.97 | |
| 1d5t_A | 433 | Guanine nucleotide dissociation inhibitor; ultra-h | 94.78 | |
| 3p1w_A | 475 | Rabgdi protein; GDI RAB, malaria, structural genom | 94.67 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 94.32 | |
| 1jnr_A | 643 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 94.31 | |
| 1b37_A | 472 | Protein (polyamine oxidase); flavin-dependent amin | 94.15 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 94.01 | |
| 4gut_A | 776 | Lysine-specific histone demethylase 1B; histone de | 93.98 | |
| 1kdg_A | 546 | CDH, cellobiose dehydrogenase; GMC oxidoreductase, | 93.59 | |
| 1kdg_A | 546 | CDH, cellobiose dehydrogenase; GMC oxidoreductase, | 93.34 | |
| 3ayj_A | 721 | Pro-enzyme of L-phenylalanine oxidase; amino acid | 93.31 | |
| 1b37_A | 472 | Protein (polyamine oxidase); flavin-dependent amin | 93.29 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 93.25 | |
| 3ayj_A | 721 | Pro-enzyme of L-phenylalanine oxidase; amino acid | 93.07 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 92.73 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 92.58 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 92.19 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 92.13 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 92.08 | |
| 1coy_A | 507 | Cholesterol oxidase; oxidoreductase(oxygen recepto | 91.72 | |
| 3p1w_A | 475 | Rabgdi protein; GDI RAB, malaria, structural genom | 91.54 | |
| 3t37_A | 526 | Probable dehydrogenase; BET alpha beta fold, ADP b | 91.39 | |
| 3q9t_A | 577 | Choline dehydrogenase and related flavoproteins; g | 90.95 | |
| 3t37_A | 526 | Probable dehydrogenase; BET alpha beta fold, ADP b | 90.58 | |
| 3q9t_A | 577 | Choline dehydrogenase and related flavoproteins; g | 90.51 | |
| 1ju2_A | 536 | HydroxynitrIle lyase; flavin, GMC oxidoreductase, | 90.4 | |
| 1ju2_A | 536 | HydroxynitrIle lyase; flavin, GMC oxidoreductase, | 90.3 | |
| 1n4w_A | 504 | CHOD, cholesterol oxidase; flavoenzyme, steroid me | 90.28 | |
| 1coy_A | 507 | Cholesterol oxidase; oxidoreductase(oxygen recepto | 90.0 | |
| 1n4w_A | 504 | CHOD, cholesterol oxidase; flavoenzyme, steroid me | 89.86 |
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-57 Score=550.86 Aligned_cols=395 Identities=28% Similarity=0.437 Sum_probs=367.8
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhc---cCcccccccChhhhccCCcEEEcCCe
Q psy2951 1065 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD---IKADSILLRTEEFYKDNDIHVIKGKK 1141 (1466)
Q Consensus 1065 ~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~ 1141 (1466)
.+++|||||||+||++||..|++.|++++|+|||+++++||.++++++.+. .....+..+..+++.+.+++++.+++
T Consensus 8 ~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 87 (415)
T 3lxd_A 8 ERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAREKTFERICIRPAQFWEDKAVEMKLGAE 87 (415)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSGGGGTTTTTTSSCSGGGBSSCHHHHHHTTEEEEETCC
T ss_pred CCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcccCCHHHHcCCCCHHHhccCCHHHHHHCCcEEEeCCE
Confidence 357899999999999999999999997789999999999999999997654 35566677778889999999999988
Q ss_pred EEEeecCCCCeEEecCCcEEecCeEEEecCCCCCcCCCCCCCC--cEEEecCHHHHHhhhcccCC-CCeEEEEcCCHHHH
Q psy2951 1142 IISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHITP-ESNVVVIGSSFIGM 1218 (1466)
Q Consensus 1142 v~~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~--~v~~~~~~~~~~~l~~~~~~-~~~vvVvG~g~~g~ 1218 (1466)
|+.+ |+..+.|.++++..+.||+||+|||++|+.+++| |.+ +++++++.+++.++++.+.. +++++|||+|++|+
T Consensus 88 v~~i-d~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~~i~-g~~~~~v~~~~~~~d~~~l~~~~~~~~~~vvViGgG~~g~ 165 (415)
T 3lxd_A 88 VVSL-DPAAHTVKLGDGSAIEYGKLIWATGGDPRRLSCV-GADLAGVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGL 165 (415)
T ss_dssp EEEE-ETTTTEEEETTSCEEEEEEEEECCCEECCCCBTT-SSCCBTEECCCSHHHHHHHHHHHHTTCCEEEEECCSHHHH
T ss_pred EEEE-ECCCCEEEECCCCEEEeeEEEEccCCccCCCCCC-CccccCEEEEcCHHHHHHHHHHhhhcCCeEEEECCCHHHH
Confidence 9999 9999999999999999999999999999999999 876 89999999999999888777 89999999999999
Q ss_pred HHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEE
Q psy2951 1219 EAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVI 1298 (1466)
Q Consensus 1219 e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv 1298 (1466)
|+|..+++.|.+|+++++.++++.+.+++++.+.+.+.++++||+++++++|++++ .+++++..|.+.||++++||.||
T Consensus 166 e~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~-~~~~~v~~v~l~dG~~i~aD~Vv 244 (415)
T 3lxd_A 166 EAAAVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIE-GDGTKVTGVRMQDGSVIPADIVI 244 (415)
T ss_dssp HHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEE-ESSSBEEEEEESSSCEEECSEEE
T ss_pred HHHHHHHhcCCeEEEEecCCchhhhhcCHHHHHHHHHHHHhCCCEEEECCEEEEEE-ecCCcEEEEEeCCCCEEEcCEEE
Confidence 99999999999999999999999988999999999999999999999999999998 55668888999999999999999
Q ss_pred EeeccccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCCC
Q psy2951 1299 VGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK 1378 (1466)
Q Consensus 1299 ~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~ 1378 (1466)
+|+|..|++++++.+|+..+ +| |.||++++|+.|+|||+|||+.++.....|.+.++++|+.|..||+.||+||+|+.
T Consensus 245 ~a~G~~p~~~l~~~~gl~~~-~g-i~vd~~~~t~~~~iyA~GD~a~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~ 322 (415)
T 3lxd_A 245 VGIGIVPCVGALISAGASGG-NG-VDVDEFCRTSLTDVYAIGDCAAHANDFADGAVIRLESVQNANDMATAAAKDICGAP 322 (415)
T ss_dssp ECSCCEESCHHHHHTTCCCS-SS-EECCTTCBCSSTTEEECGGGEEEECGGGTTCEECCCSHHHHHHHHHHHHHHHTTCC
T ss_pred ECCCCccChHHHHhCCCCcC-CC-EEECCCCCcCCCCEEEEEeeeeecCcccCCcceeechHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999887 45 99999999999999999999999876522788999999999999999999999998
Q ss_pred CCCCCCccceeccccccEEEEeeCCCCceEEEcCCcCCceEEEEEEeCCEEEEEEEecCcHHHHHHHHHHHcCCCCChhc
Q psy2951 1379 TSLSTIPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTVGMDPLAAQFAERIKMQKYIQKDQ 1458 (1466)
Q Consensus 1379 ~~~~~~p~~w~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1458 (1466)
.+|..+|||||+||+.++|++|...++++++++||+++..|.+||+++|+|+|++++|+++++..++++|+++.++++++
T Consensus 323 ~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (415)
T 3lxd_A 323 VPYKATPWFWSNQYDLKLQTVGLSTGHDNAVLRGDPATRSFSVVYLKGGKVVALDCVNMVKDYVQGKKLVEARAQIAPEQ 402 (415)
T ss_dssp CCCCCCCEEEEEETTEEEEEEECCTTCSEEEEEEEGGGTEEEEEEEETTEEEEEEEESCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCCCCCCeeEeeeCCcEEEEEeCCCCCCEEEEEecCCCCeEEEEEEECCEEEEEEEECChHHHHHHHHHHHCCCCCCHHH
Confidence 89999999999999999999999988899999999988999999999999999999999999999999999999999999
Q ss_pred ccccCc
Q psy2951 1459 IENNAW 1464 (1466)
Q Consensus 1459 ~~~~~~ 1464 (1466)
|+|.+.
T Consensus 403 l~~~~~ 408 (415)
T 3lxd_A 403 LADAGV 408 (415)
T ss_dssp HTCTTS
T ss_pred hcCCCC
Confidence 977653
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-57 Score=542.88 Aligned_cols=391 Identities=27% Similarity=0.448 Sum_probs=365.6
Q ss_pred CcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhc---cCcccccccChhhhccCCcEEEcCCeEE
Q psy2951 1067 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD---IKADSILLRTEEFYKDNDIHVIKGKKII 1143 (1466)
Q Consensus 1067 ~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 1143 (1466)
++|||||||+||++||..|++.|++.+|+|||+++++||.++++++.+. .....+..+..+++.+.+++++. ++|+
T Consensus 2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~-~~v~ 80 (404)
T 3fg2_P 2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFRPEKFFQDQAIELIS-DRMV 80 (404)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGGGGTGGGGSCCCTTSSBSSCHHHHHHTTEEEEC-CCEE
T ss_pred CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCccCCHHHHCCCCCHHHccCCCHHHHHhCCCEEEE-EEEE
Confidence 5899999999999999999999998899999999999999999997654 34566667778889999999999 8899
Q ss_pred EeecCCCCeEEecCCcEEecCeEEEecCCCCCcCCCCCCCC--cEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHH
Q psy2951 1144 SDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA 1221 (1466)
Q Consensus 1144 ~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~--~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a 1221 (1466)
.+ |+..+.|.++++.++.||+||+|||++|+.+++| |.+ +++++++.+++..+++.+..+++++|||+|++|+|+|
T Consensus 81 ~i-d~~~~~v~~~~g~~~~~d~lvlAtG~~p~~~~i~-g~~~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~e~A 158 (404)
T 3fg2_P 81 SI-DREGRKLLLASGTAIEYGHLVLATGARNRMLDVP-NASLPDVLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFA 158 (404)
T ss_dssp EE-ETTTTEEEESSSCEEECSEEEECCCEEECCCCST-TTTSTTEECCSSHHHHHHHHHHGGGCSEEEEECCSHHHHHHH
T ss_pred EE-ECCCCEEEECCCCEEECCEEEEeeCCCccCCCCC-CCCCCcEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHH
Confidence 99 9999999999999999999999999999999999 876 8999999999999988888899999999999999999
Q ss_pred HHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEee
Q psy2951 1222 AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 1301 (1466)
Q Consensus 1222 ~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~ 1301 (1466)
..+++.|.+|+++++.+.++.+.+++++.+.+.+.++++||+++++++|++++ .+++++..|.+.||++++||.||+|+
T Consensus 159 ~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~-~~~~~v~~V~~~dG~~i~aD~Vv~a~ 237 (404)
T 3fg2_P 159 ATARAKGLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIA-AEGDRVTGVVLSDGNTLPCDLVVVGV 237 (404)
T ss_dssp HHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEE-EETTEEEEEEETTSCEEECSEEEECC
T ss_pred HHHHhCCCEEEEEeCCCcchhhccCHHHHHHHHHHHHhCCcEEEECCEEEEEE-ecCCcEEEEEeCCCCEEEcCEEEECc
Confidence 99999999999999999999888999999999999999999999999999998 45567888999999999999999999
Q ss_pred ccccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCCCCCC
Q psy2951 1302 GTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSL 1381 (1466)
Q Consensus 1302 G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~~~~ 1381 (1466)
|..|++++++.+|+..+ +| |.||++++|+.|+|||+|||+..+... .|.++++++|..|..||+.||+||+|+..+|
T Consensus 238 G~~p~~~l~~~~gl~~~-~G-i~vd~~~~t~~~~iya~GD~a~~~~~~-~g~~~~~~~~~~A~~qg~~aa~~i~g~~~~~ 314 (404)
T 3fg2_P 238 GVIPNVEIAAAAGLPTA-AG-IIVDQQLLTSDPHISAIGDCALFESVR-FGETMRVESVQNATDQARCVAARLTGDAKPY 314 (404)
T ss_dssp CEEECCHHHHHTTCCBS-SS-EEECTTSBCSSTTEEECGGGEEEEETT-TTEEECCCSHHHHHHHHHHHHHHTTTCCCCC
T ss_pred CCccCHHHHHhCCCCCC-CC-EEECCCcccCCCCEEEeecceeecCcc-CCceeeehHHHHHHHHHHHHHHHhCCCCCCC
Confidence 99999999999999887 45 999999999999999999999988765 5888999999999999999999999998899
Q ss_pred CCCccceeccccccEEEEeeCCCCceEEEcCCcCCceEEEEEEeCCEEEEEEEecCcHHHHHHHHHHHcCCCCChhcccc
Q psy2951 1382 STIPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTVGMDPLAAQFAERIKMQKYIQKDQIEN 1461 (1466)
Q Consensus 1382 ~~~p~~w~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1461 (1466)
..+|||||+||+.++|++|....+++++++||+++..|++||+++|+|+|++++|+++++..++++|+++.++++++|+|
T Consensus 315 ~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 394 (404)
T 3fg2_P 315 DGYPWFWSDQGDDKLQIVGLTAGFDQVVIRGSVAERSFSAFCYKAGKLIGIESVNRAADHVFGRKILPLDKSVTPEQAAD 394 (404)
T ss_dssp CCCCEEEEEETTEEEEEEECCTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEESCHHHHHHHHHHTTTTCCCCHHHHHC
T ss_pred CCCCceEeEECCcEEEEEeCCCCCCEEEEEecCCCCcEEEEEEECCEEEEEEEeCCHHHHHHHHHHHHcCCCCCHHHhcC
Confidence 99999999999999999999988899999999989999999999999999999999999999999999999999999977
Q ss_pred cCc
Q psy2951 1462 NAW 1464 (1466)
Q Consensus 1462 ~~~ 1464 (1466)
.+.
T Consensus 395 ~~~ 397 (404)
T 3fg2_P 395 LSF 397 (404)
T ss_dssp TTS
T ss_pred CCC
Confidence 653
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-56 Score=540.91 Aligned_cols=389 Identities=25% Similarity=0.397 Sum_probs=362.9
Q ss_pred CcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhc---cCcccccccChhhhccCCcEEEcCCeEE
Q psy2951 1067 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD---IKADSILLRTEEFYKDNDIHVIKGKKII 1143 (1466)
Q Consensus 1067 ~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 1143 (1466)
++|||||||+||++||..|++.|++++|+|||+++++||+++++++.+. ...+.+ ++..+++.+.+++++.+++|+
T Consensus 3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~~l~~~~~~g~~~~~~~-~~~~~~~~~~~i~~~~~~~v~ 81 (410)
T 3ef6_A 3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPI-LAEADWYGEARIDMLTGPEVT 81 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSGGGGTHHHHTSSSSCCB-SSCTTHHHHTTCEEEESCCEE
T ss_pred CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCccccHHHhCCCCCHHHh-cCCHHHHHHCCCEEEeCCEEE
Confidence 5899999999999999999999997789999999999999999998653 345556 777888999999999998899
Q ss_pred EeecCCCCeEEecCCcEEecCeEEEecCCCCCcCCCCCCCC--cEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHH
Q psy2951 1144 SDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA 1221 (1466)
Q Consensus 1144 ~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~--~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a 1221 (1466)
.+ |+..++|.+.+|.++.||+||+|||++|+.|++| |.+ +++++++.+++.++++.+..+++++|||+|++|+|+|
T Consensus 82 ~i-d~~~~~v~~~~g~~~~~d~lvlAtG~~p~~~~ip-G~~~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~E~A 159 (410)
T 3ef6_A 82 AL-DVQTRTISLDDGTTLSADAIVIATGSRARTMALP-GSQLPGVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVA 159 (410)
T ss_dssp EE-ETTTTEEEETTSCEEECSEEEECCCEEECCCCCT-TTTSTTEECCCSHHHHHHHHHHCCTTCEEEEECCSHHHHHHH
T ss_pred EE-ECCCCEEEECCCCEEECCEEEEccCCcccCCCCC-CccccceEEeccHHHHHHHHHHhccCCeEEEECCCHHHHHHH
Confidence 99 9999999999999999999999999999999999 876 8999999999999998888899999999999999999
Q ss_pred HHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEee
Q psy2951 1222 AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 1301 (1466)
Q Consensus 1222 ~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~ 1301 (1466)
..+++.|.+|+++++.++++.+.+++++.+.+.+.++++||+++++++|++++ . ++++..|++.||++++||.||+|+
T Consensus 160 ~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~-~-~~~~~~v~~~dg~~i~aD~Vv~a~ 237 (410)
T 3ef6_A 160 TTARKLGLSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFS-G-EGQLEQVMASDGRSFVADSALICV 237 (410)
T ss_dssp HHHHHTTCEEEEECSSSSSSHHHHCHHHHHHHHHHHHHHTCEEECSCCEEEEE-C-SSSCCEEEETTSCEEECSEEEECS
T ss_pred HHHHhCCCeEEEEecCCccchhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEe-c-cCcEEEEEECCCCEEEcCEEEEee
Confidence 99999999999999999999888999999999999999999999999999998 3 346667999999999999999999
Q ss_pred ccccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCCCCCC
Q psy2951 1302 GTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSL 1381 (1466)
Q Consensus 1302 G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~~~~ 1381 (1466)
|..|++++++.+|+.++ +| |.||++++|+.|+|||+|||+.++... |.+.++++|..|..||+.||+||+|...+|
T Consensus 238 G~~p~~~l~~~~gl~~~-~g-i~vd~~~~t~~~~IyA~GD~a~~~~~~--g~~~~~~~~~~A~~qg~~aa~~i~g~~~~~ 313 (410)
T 3ef6_A 238 GAEPADQLARQAGLACD-RG-VIVDHCGATLAKGVFAVGDVASWPLRA--GGRRSLETYMNAQRQAAAVAAAILGKNVSA 313 (410)
T ss_dssp CEEECCHHHHHTTCCBS-SS-EECCTTSBCSSTTEEECGGGEEEEBTT--SSEECCCCHHHHHHHHHHHHHHHTTCCCCC
T ss_pred CCeecHHHHHhCCCccC-Ce-EEEccCeeECCCCEEEEEcceeccCCC--CCeeeechHHHHHHHHHHHHHHHcCCCCCC
Confidence 99999999999999987 44 999999999999999999999988764 778899999999999999999999998899
Q ss_pred CCCccceeccccccEEEEeeCCCCceEEEcCCcCCceEEEEEEeCCEEEEEEEecCcHHHHHHHHHHHcCCCCChhcccc
Q psy2951 1382 STIPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTVGMDPLAAQFAERIKMQKYIQKDQIEN 1461 (1466)
Q Consensus 1382 ~~~p~~w~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1461 (1466)
..+|||||+||+.+++++|...+.++++++|++++..|++||+++|+|+|++++|+++++..++++|+++.++++++|+|
T Consensus 314 ~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~ 393 (410)
T 3ef6_A 314 PQLPVSWTEIAGHRMQMAGDIEGPGDFVSRGMPGSGAALLFRLQERRIQAVVAVDAPRDFALATRLVEARAAIEPARLAD 393 (410)
T ss_dssp CBCCEEEEEETTEEEEEESCSSSSSEEEEESCTTSSSEEEEEEETTEEEEEEEESCHHHHHHHHHHHHHTCBCCHHHHHC
T ss_pred CCCCeeEEEECCceEEEEcCCCCCCEEEEEeeCCCCeEEEEEEECCEEEEEEEECChHHHHHHHHHHhCCCCCCHHHhcC
Confidence 99999999999999999999888889999999988999999999999999999999999999999999999999999976
Q ss_pred cCc
Q psy2951 1462 NAW 1464 (1466)
Q Consensus 1462 ~~~ 1464 (1466)
.+.
T Consensus 394 ~~~ 396 (410)
T 3ef6_A 394 LSN 396 (410)
T ss_dssp TTS
T ss_pred CCC
Confidence 653
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-52 Score=500.37 Aligned_cols=393 Identities=28% Similarity=0.459 Sum_probs=359.6
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhc---cCcccccccChhhhccCCcEEEcCCeE
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD---IKADSILLRTEEFYKDNDIHVIKGKKI 1142 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~v 1142 (1466)
.++|||||||+||+++|..|++.|++.+|+|||++++.||.++++++.+. ...+.+.....+++++.+++++.+++|
T Consensus 4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v 83 (431)
T 1q1r_A 4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQV 83 (431)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCCE
T ss_pred CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCCCCcHHHhCCCCChHHhcccCHHHHHhCCCEEEeCCEE
Confidence 46899999999999999999999987889999999999999999888654 233444455667888899999999999
Q ss_pred EEeecCCCCeEEecCCcEEecCeEEEecCCCCCcCCCCCCCC--c---EEEecCHHHHHhhhcccCCCCeEEEEcCCHHH
Q psy2951 1143 ISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN--K---VFYLRTVEDANNIAPHITPESNVVVIGSSFIG 1217 (1466)
Q Consensus 1143 ~~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~--~---v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g 1217 (1466)
+.+ ++..++|.+++|.++.||+||+|||++|+.+++| |.+ + ++++++.+++.++++.+..+++|+|||+|++|
T Consensus 84 ~~i-~~~~~~v~~~~g~~~~~d~lviAtG~~p~~~~i~-G~~~~~~~~v~~~~~~~d~~~l~~~l~~~~~vvViGgG~~g 161 (431)
T 1q1r_A 84 TAI-NRDRQQVILSDGRALDYDRLVLATGGRPRPLPVA-SGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIG 161 (431)
T ss_dssp EEE-ETTTTEEEETTSCEEECSEEEECCCEEECCCGGG-TTHHHHSTTEEESSSHHHHHHHHHTCCTTCEEEEECCSHHH
T ss_pred EEE-ECCCCEEEECCCCEEECCEEEEcCCCCccCCCCC-CcccCCCceEEEECCHHHHHHHHHHhhcCCeEEEECCCHHH
Confidence 999 9988999999999999999999999999999998 876 6 99999999999999888889999999999999
Q ss_pred HHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEec--CCCcEEEEEcCCCCeeecC
Q psy2951 1218 MEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKN--EKNDVTAANLDNGTTIPAD 1295 (1466)
Q Consensus 1218 ~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~--~~g~~~~v~l~~g~~i~~D 1295 (1466)
+|+|..|++.|.+|+++++.+.++++.+++++.+.+.+.+++.||+++++++|++++ . +++++..|.+.+|+++++|
T Consensus 162 ~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~-~~~~~~~v~~v~~~~G~~i~~D 240 (431)
T 1q1r_A 162 LEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFE-MSTDQQKVTAVLCEDGTRLPAD 240 (431)
T ss_dssp HHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEE-ECTTTCCEEEEEETTSCEEECS
T ss_pred HHHHHHHHhCCCEEEEEEeCCccccchhhHHHHHHHHHHHHhCCeEEEeCCEEEEEE-eccCCCcEEEEEeCCCCEEEcC
Confidence 999999999999999999999998888899999999999999999999999999998 4 4567778999999999999
Q ss_pred EEEEeeccccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhc
Q psy2951 1296 LVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMV 1375 (1466)
Q Consensus 1296 ~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~ 1375 (1466)
.||+|+|..|++++++.+|+.++ +| |.||++++|+.|+|||+|||+..+.+. .|.+.++++|..|..||+.||+||+
T Consensus 241 ~Vv~a~G~~p~~~l~~~~gl~~~-~g-i~Vd~~~~ts~~~IyA~GD~~~~~~~~-~g~~~~~~~~~~A~~qg~~aa~~i~ 317 (431)
T 1q1r_A 241 LVIAGIGLIPNCELASAAGLQVD-NG-IVINEHMQTSDPLIMAVGDCARFHSQL-YDRWVRIESVPNALEQARKIAAILC 317 (431)
T ss_dssp EEEECCCEEECCHHHHHTTCCBS-SS-EECCTTSBCSSTTEEECGGGEEEEETT-TTEEEECCSHHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCcCcchhhccCCCCC-CC-EEECCCcccCCCCEEEEEeEEEEcccc-CCceEeeCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999886 45 999999999999999999999987754 5788899999999999999999999
Q ss_pred CCCCCCCCCccceeccccccEEEEeeCCCCceEEEcCCcCCceEEEEEEeCCEEEEEEEecCcHHHHHHHHHHHcCCCCC
Q psy2951 1376 EKKTSLSTIPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTVGMDPLAAQFAERIKMQKYIQ 1455 (1466)
Q Consensus 1376 g~~~~~~~~p~~w~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1455 (1466)
|...+|..+|||||++|+.+++++|.....++++++++++...|+++|.++|+|+|+.++|++.....++.+|+.+..++
T Consensus 318 g~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~g~~~~~~~~~~~i~~~~~~~ 397 (431)
T 1q1r_A 318 GKVPRDEAAPWFWSDQYEIGLKMVGLSEGYDRIIVRGSLAQPDFSVFYLQGDRVLAVDTVNRPVEFNQSKQIITDRLPVE 397 (431)
T ss_dssp TCCCCCCCCCEEEEEETTEEEEEEECCTTCSEEEEEEETTTTEEEEEEEETTEEEEEEEESCHHHHHHHHHHHHTTCCCC
T ss_pred CCCCCCCCCCeEEEEECCceEEEEeCCCCCCEEEEEccCCCCeEEEEEEeCCEEEEEEEECChHHHHHHHHHHHCCCCCC
Confidence 98888999999999999999999999888888999998877889999999999999999999999999999999999999
Q ss_pred hhcccccCc
Q psy2951 1456 KDQIENNAW 1464 (1466)
Q Consensus 1456 ~~~~~~~~~ 1464 (1466)
+++|.+..+
T Consensus 398 ~~~l~~~~~ 406 (431)
T 1q1r_A 398 PNLLGDESV 406 (431)
T ss_dssp HHHHTCTTS
T ss_pred HHHhhCCCC
Confidence 999877654
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-52 Score=497.35 Aligned_cols=365 Identities=22% Similarity=0.372 Sum_probs=330.0
Q ss_pred CCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhc--cCcccccccChhhhccCCcEEEcCC
Q psy2951 1063 SGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD--IKADSILLRTEEFYKDNDIHVIKGK 1140 (1466)
Q Consensus 1063 ~~~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~ 1140 (1466)
..++++|||||||+||++||..|+..+ .+|+|||+++++||.++++++.+. .+.+++..+..++++++++++++++
T Consensus 6 ~~~~~~~vIvGgG~AGl~aA~~L~~~~--~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~ 83 (385)
T 3klj_A 6 HHKSTKILILGAGPAGFSAAKAALGKC--DDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSE 83 (385)
T ss_dssp --CBCSEEEECCSHHHHHHHHHHTTTC--SCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEECSC
T ss_pred ccCCCCEEEEcCcHHHHHHHHHHhCCC--CEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEeCC
Confidence 345678999999999999999995444 499999999999999999999775 3556777788899999999999999
Q ss_pred eEEEeecCCCCeEEecCCcEEecCeEEEecCCCCCcCCCCCCCCcEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHH
Q psy2951 1141 KIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEA 1220 (1466)
Q Consensus 1141 ~v~~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~ 1220 (1466)
+|++| |++.++|++++|+++.||+||||||++|+.|++| |.++++++++.+++.++++.+..+++|+|||+|++|+|+
T Consensus 84 ~V~~i-d~~~~~v~~~~g~~~~yd~lvlAtG~~p~~p~i~-G~~~v~~~~~~~d~~~l~~~l~~~~~vvVIGgG~~g~E~ 161 (385)
T 3klj_A 84 FATSI-DPNNKLVTLKSGEKIKYEKLIIASGSIANKIKVP-HADEIFSLYSYDDALKIKDECKNKGKAFIIGGGILGIEL 161 (385)
T ss_dssp CEEEE-ETTTTEEEETTSCEEECSEEEECCCEEECCCCCT-TCSCEECCSSHHHHHHHHHHHHHHSCEEEECCSHHHHHH
T ss_pred EEEEE-ECCCCEEEECCCCEEECCEEEEecCCCcCCCCCC-CCCCeEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHH
Confidence 99999 9999999999999999999999999999999999 988999999999999999888778999999999999999
Q ss_pred HHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEe
Q psy2951 1221 AAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVG 1300 (1466)
Q Consensus 1221 a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a 1300 (1466)
|..|++.|.+|+++++.++++.+.+++++.+.+.+.++++||++++++.++++ |+++++|.||+|
T Consensus 162 A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i---------------g~~~~~D~vv~a 226 (385)
T 3klj_A 162 AQAIIDSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNFEEM---------------GDLIRSSCVITA 226 (385)
T ss_dssp HHHHHHHTCCEEEECSSSSSCTTTSCHHHHHHHHHHHHTTTCEEECSCCGGGC---------------HHHHHHSEEEEC
T ss_pred HHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhCCCEEEeCCEEEEc---------------CeEEecCeEEEC
Confidence 99999999999999999999998899999999999999999999998876544 568999999999
Q ss_pred eccccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCCCCC
Q psy2951 1301 IGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS 1380 (1466)
Q Consensus 1301 ~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~~~ 1380 (1466)
+|..|++++++.+|+..+ +| |.||++++|+.|+|||+|||+.++... ..+|..|..||+.||+||+|...+
T Consensus 227 ~G~~p~~~~~~~~gl~~~-~g-i~vd~~~~t~~~~IyA~GD~a~~~~~~-------~~~~~~A~~qg~~aa~~i~g~~~~ 297 (385)
T 3klj_A 227 VGVKPNLDFIKDTEIASK-RG-ILVNDHMETSIKDIYACGDVAEFYGKN-------PGLINIANKQGEVAGLNACGEDAS 297 (385)
T ss_dssp CCEEECCGGGTTSCCCBS-SS-EEECTTCBCSSTTEEECGGGEEETTBC-------CCCHHHHHHHHHHHHHHHTTCCCC
T ss_pred cCcccChhhhhhcCCCcC-CC-EEECCCcccCCCCEEEEEeeEecCCCc-------ccHHHHHHHHHHHHHHHhcCCCcC
Confidence 999999999999999876 44 999999999999999999999987542 347999999999999999998888
Q ss_pred CCC-CccceeccccccEEEEeeCCCC-ceEEEcCCcCCceEEEEEEeCCEEEEEEEecCcHHHHHHHHHHHcCCCCCh
Q psy2951 1381 LST-IPFFWTMLFGVGFRFAGYAAGH-TQVDIVGDLEALKFTAYYSNADKVLAILTVGMDPLAAQFAERIKMQKYIQK 1456 (1466)
Q Consensus 1381 ~~~-~p~~w~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1456 (1466)
|.. +||||+++|+.+++++|..... ++.+++ ++++..|++||+++|+|+|++++|++++...++++|+++..++.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~g~~~~g~~~~~~~~~~~i~~~~~~~~ 374 (385)
T 3klj_A 298 YSEIIPSPILKVSGISIISCGDIENNKPSKVFR-STQEDKYIVCMLKENKIDAAAVIGDVSLGTKLKKAIDSSKSFDN 374 (385)
T ss_dssp CCCCCCCCEEEETTEEEEEESCCTTCCCSEEEE-EECSSCEEEEEEETTEEEEEEEESCHHHHHHHHHHHHTTCBCSC
T ss_pred CCCCCCcEEEEeCCCcEEEEcCCCCCCCeEEEE-ECCCCeEEEEEEECCEEEEEEEECCcHHHHHHHHHHHcCCCccc
Confidence 876 6999999999999999997654 566666 77788899999999999999999999999999999999976653
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-50 Score=486.22 Aligned_cols=384 Identities=25% Similarity=0.409 Sum_probs=348.1
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhc-c-CcccccccChhhhccCCcEEEcCCeEE
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD-I-KADSILLRTEEFYKDNDIHVIKGKKII 1143 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~-~-~~~~~~~~~~~~~~~~~v~~~~~~~v~ 1143 (1466)
.++|||||||+||+++|..|++.|++.+|+|||++++.||.++++++.+. . ..+.+.++ ++.+.+++++.+++|+
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~v~ 83 (408)
T 2gqw_A 7 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLD---CKRAPEVEWLLGVTAQ 83 (408)
T ss_dssp CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTHHHHHCCGGGSBCC---CTTSCSCEEEETCCEE
T ss_pred CCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcccCCCCCHHHhCCCchhhhhHH---HHHHCCCEEEcCCEEE
Confidence 46899999999999999999999997789999999999999999887553 1 12333232 6778899999999999
Q ss_pred EeecCCCCeEEecCCcEEecCeEEEecCCCCCcCCC-CCCCC-cEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHH
Q psy2951 1144 SDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQ-ADGVN-KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA 1221 (1466)
Q Consensus 1144 ~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~-~~g~~-~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a 1221 (1466)
.+ |+..++|.+++|.++.||+||+|||++|+.|++ | |.+ +++++++.+++.++++.+..+++|+|||+|++|+|+|
T Consensus 84 ~i-~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~i~~-G~~~~v~~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A 161 (408)
T 2gqw_A 84 SF-DPQAHTVALSDGRTLPYGTLVLATGAAPRALPTLQ-GATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELA 161 (408)
T ss_dssp EE-ETTTTEEEETTSCEEECSEEEECCCEEECCCGGGT-TCSSCEEECCSHHHHHHHHTTCCTTCEEEEECCSHHHHHHH
T ss_pred EE-ECCCCEEEECCCCEEECCEEEECCCCCCCCCCccC-CCCCcEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHH
Confidence 99 999999999999999999999999999999998 8 886 8999999999999988888899999999999999999
Q ss_pred HHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEee
Q psy2951 1222 AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 1301 (1466)
Q Consensus 1222 ~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~ 1301 (1466)
..|++.|.+|+++++.+.++++.+++++.+.+.+.++++||+++++++|++++ + + .|.+.+|+++++|.||+|+
T Consensus 162 ~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~--~-~---~v~~~~g~~i~~D~vi~a~ 235 (408)
T 2gqw_A 162 ATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSV--D-G---VVLLDDGTRIAADMVVVGI 235 (408)
T ss_dssp HHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEE--T-T---EEEETTSCEEECSEEEECS
T ss_pred HHHHhCCCEEEEEEeCCcccccccCHHHHHHHHHHHHHcCcEEEeCCEEEEEE--C-C---EEEECCCCEEEcCEEEECc
Confidence 99999999999999999999878899999999999999999999999999997 2 2 5788999999999999999
Q ss_pred ccccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCCCC-C
Q psy2951 1302 GTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT-S 1380 (1466)
Q Consensus 1302 G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~~-~ 1380 (1466)
|..|++++++.+|+..+ +| |.||++++|+.|+|||+|||+..+.+. .|.+.++++|..|..||+.||+||+|... +
T Consensus 236 G~~p~~~l~~~~gl~~~-~g-i~Vd~~~~t~~~~IyA~GD~~~~~~~~-~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~ 312 (408)
T 2gqw_A 236 GVLANDALARAAGLACD-DG-IFVDAYGRTTCPDVYALGDVTRQRNPL-SGRFERIETWSNAQNQGIAVARHLVDPTAPG 312 (408)
T ss_dssp CEEECCHHHHHHTCCBS-SS-EECCTTCBCSSTTEEECGGGEEEEETT-TTEEECCCCHHHHHHHHHHHHHHHHCTTSCC
T ss_pred CCCccHHHHHhCCCCCC-CC-EEECCCCccCCCCEEEEEEEEEecCcc-CCceeeccHHHHHHHHHHHHHHHhcCCCCCc
Confidence 99999999999999886 55 999999999999999999999987654 57788899999999999999999999887 8
Q ss_pred CCCCccceeccccccEEEEeeCCCCceEEEcCCcC--CceEEEEEEeCCEEEEEEEecCcHHHHHHHHHHHcCCCCChhc
Q psy2951 1381 LSTIPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLE--ALKFTAYYSNADKVLAILTVGMDPLAAQFAERIKMQKYIQKDQ 1458 (1466)
Q Consensus 1381 ~~~~p~~w~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1458 (1466)
|..+||||+++|+.+++++|. ...++++++++++ ...|.++|.++++|+|+.++|...++..++++|+.+..+++.+
T Consensus 313 ~~~~p~~~~~~~~~~~~~~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~g~~~~~~~~~~~i~~~~~~~~~~ 391 (408)
T 2gqw_A 313 YAELPWYWSDQGALRIQVAGL-ASGDEEIVRGEVSLDAPKFTLIELQKGRIVGATCVNNARDFAPLRRLLAVGAKPDRAA 391 (408)
T ss_dssp CCCCCEEEEEETTEEEEEEEC-SCCSEEEEESCCCSSSCCEEEEEEETTEEEEEEEESCHHHHHHHHHHHHTTCCCCHHH
T ss_pred CCCCCeEEEEECCceEEEECC-CCCCEEEEEccCCCCCCeEEEEEEeCCEEEEEEEECChHHHHHHHHHHHCCCCCChHH
Confidence 999999999999999999999 7678888899876 6779999999999999999999999999999999999999998
Q ss_pred ccccCc
Q psy2951 1459 IENNAW 1464 (1466)
Q Consensus 1459 ~~~~~~ 1464 (1466)
|.|..+
T Consensus 392 l~~~~~ 397 (408)
T 2gqw_A 392 LADPAT 397 (408)
T ss_dssp HHCTTC
T ss_pred hcCCCC
Confidence 866553
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-49 Score=489.87 Aligned_cols=384 Identities=21% Similarity=0.312 Sum_probs=320.9
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhccC-----------------cccccccChh
Q psy2951 1065 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIK-----------------ADSILLRTEE 1127 (1466)
Q Consensus 1065 ~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~~~-----------------~~~~~~~~~~ 1127 (1466)
..++|||||||+||++||..|++.++..+|+|||+++++||.++++++.+... ...+.+++.+
T Consensus 10 ~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r~~lsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (493)
T 1m6i_A 10 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPS 89 (493)
T ss_dssp SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGG
T ss_pred CcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCHHhhcCCccchhhcccccccccccccccccchH
Confidence 34689999999999999999999866679999999999999999998876311 1112223333
Q ss_pred hhc---------cCCcEEEcCCeEEEeecCCCCeEEecCCcEEecCeEEEecCCCCCcCCCCCCC------CcEEEecCH
Q psy2951 1128 FYK---------DNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGV------NKVFYLRTV 1192 (1466)
Q Consensus 1128 ~~~---------~~~v~~~~~~~v~~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~------~~v~~~~~~ 1192 (1466)
++. +.+++++++++|+.+ |+..++|.+++|+++.||+||||||++|+.++++ |. ++++++++.
T Consensus 90 ~~~~~~~l~~~~~~gv~~~~g~~v~~i-d~~~~~V~~~~g~~i~yd~lviATGs~p~~~~~~-~~~~~~~~~~v~~~~~~ 167 (493)
T 1m6i_A 90 FYVSAQDLPHIENGGVAVLTGKKVVQL-DVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAI-DRAGAEVKSRTTLFRKI 167 (493)
T ss_dssp GSBCTTTTTTSTTCEEEEEETCCEEEE-EGGGTEEEETTSCEEEEEEEEECCCEEECCCHHH-HTSCHHHHHTEEECCSH
T ss_pred hhcchhhhhhhhcCCeEEEcCCEEEEE-ECCCCEEEECCCCEEECCEEEECCCCCCCCCCCc-ccccccccCceEEEcCH
Confidence 332 468999999889999 9989999999999999999999999999988765 42 278999999
Q ss_pred HHHHhhhcccCCCCeEEEEcCCHHHHHHHHHHhc----CCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCc
Q psy2951 1193 EDANNIAPHITPESNVVVIGSSFIGMEAAAFCAS----KVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKA 1268 (1466)
Q Consensus 1193 ~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~----~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~ 1268 (1466)
+++.++++.+..+++|+|||+|++|+|+|..|++ .|.+|+++++.+.++.+.+++.+.+.+.+.++++||++++++
T Consensus 168 ~d~~~l~~~~~~~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~~l~~~~~~~~~~~l~~~GV~v~~~~ 247 (493)
T 1m6i_A 168 GDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNA 247 (493)
T ss_dssp HHHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEECSC
T ss_pred HHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccccccCCHHHHHHHHHHHHhcCCEEEeCC
Confidence 9999888777779999999999999999999876 478999999998888888999999999999999999999999
Q ss_pred eEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccCccccccCCceeeC-CCeEEeCCCccccCCCEEEecccccCCC
Q psy2951 1269 NVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNG-QKAVVVNEYLETNVPGVYAGGDIAYAPL 1347 (1466)
Q Consensus 1269 ~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~-~G~i~vd~~~~t~~~~v~a~GD~a~~p~ 1347 (1466)
+|++++ .+++. ..|.+.+|++++||.||+|+|..|++++++.+|+.++. +|+|.||+++|| .|+|||+|||+.++.
T Consensus 248 ~V~~i~-~~~~~-~~v~l~dG~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~~~~ggi~Vd~~l~t-~~~IyA~GD~a~~~~ 324 (493)
T 1m6i_A 248 IVQSVG-VSSGK-LLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQA-RSNIWVAGDAACFYD 324 (493)
T ss_dssp CEEEEE-EETTE-EEEEETTSCEEEESEEEECCCEEECCTTHHHHTCCBCTTTCSEECCTTCEE-ETTEEECGGGEEEEE
T ss_pred EEEEEE-ecCCe-EEEEECCCCEEECCEEEECCCCCccHHHHHHcCCccccCCCcEEECCCccc-CCCeeEeeeeEeccC
Confidence 999997 33333 46889999999999999999999999999999999885 578999999998 599999999999876
Q ss_pred ccCCCceeeeecHHHHHHHHHHHHHHhcCCCCCCCCCccceeccc-----------cccEEEEeeCCC---CceE-----
Q psy2951 1348 HSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLF-----------GVGFRFAGYAAG---HTQV----- 1408 (1466)
Q Consensus 1348 ~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~~~~~~~p~~w~~~~-----------~~~~~~~g~~~~---~~~~----- 1408 (1466)
.. .|. .+++||.+|..||+.||+||+|...+|.+.|||||+|+ +.+++.+|.... .++.
T Consensus 325 ~~-~g~-~~~~~~~~A~~qg~~aa~ni~g~~~~~~~~~~~~s~~~~~~~~~~~g~~~~~~~~~G~~~~~~~~~~~~~~~~ 402 (493)
T 1m6i_A 325 IK-LGR-RRVEHHDHAVVSGRLAGENMTGAAKPYWHQSMFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATE 402 (493)
T ss_dssp TT-TEE-ECCCCHHHHHHHHHHHHHHHTSCCCCCCCCCEEEEESSTTCEEEEEECCCTTSCEEEEEECCCTTCSHHHHHH
T ss_pred cc-cCc-cccchHHHHHHHHHHHHHHhcCCCCCcCCcCceeeeeccCcceEEEeccCCCcceEEeecccccccccccccc
Confidence 54 243 37889999999999999999999899999999999998 445555554211 1110
Q ss_pred ----EEc-------------------CC-------cCCceEEEEEEeCCEEEEEEEecCcHHHHHHHHHHHcCCCCC
Q psy2951 1409 ----DIV-------------------GD-------LEALKFTAYYSNADKVLAILTVGMDPLAAQFAERIKMQKYIQ 1455 (1466)
Q Consensus 1409 ----~~~-------------------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1455 (1466)
.++ |+ ....+|++||++||+|+|++++|+++++..+|++|+++..++
T Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~li~~~~~~~ 479 (493)
T 1m6i_A 403 QSGTGIRSESETESEASEITIPPSTPAVPQAPVQGEDYGKGVIFYLRDKVVVGIVLWNIFNRMPIARKIIKDGEQHE 479 (493)
T ss_dssp HHSCSCHHHHSCSCCCC--------------------CCEEEEEEEETTEEEEEEEESCCSCHHHHHHHHHHCCBCS
T ss_pred cccccccccccccccccccccccccccccccccccccCCcEEEEEEeCCEEEEEEEecCcchHHHHHHHHhCCCCCC
Confidence 011 11 124668999999999999999999999999999999997664
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-45 Score=442.48 Aligned_cols=375 Identities=29% Similarity=0.447 Sum_probs=336.7
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcc---cCcccccccCHhHhhhCCcEEEEceE
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD---IKADSILLRTEEFYKDNDIHVIKGKK 670 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~gv~~~~~~~ 670 (1466)
.+++|+|||||+||++||..|+++|++.+|+++++++.++|..+.++..+- .....+..+..+++.+.+++++.+++
T Consensus 8 ~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 87 (415)
T 3lxd_A 8 ERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAREKTFERICIRPAQFWEDKAVEMKLGAE 87 (415)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSGGGGTTTTTTSSCSGGGBSSCHHHHHHTTEEEEETCC
T ss_pred CCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcccCCHHHHcCCCCHHHhccCCHHHHHHCCcEEEeCCE
Confidence 468999999999999999999999999899999999999998877764332 35566777788889999999999988
Q ss_pred EEEeccccccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCC--cEEEecCHHHHHhhcccCCC-CCcEEEECCChHHH
Q psy2951 671 IISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHITP-ESNVVVIGSSFIGM 747 (1466)
Q Consensus 671 v~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~-~~~vvVvG~G~~g~ 747 (1466)
|..+ +...+.+.+.++..+.||+||||||++|+.|+++ |.+ +++++++.+++..+...+.. +++++|||+|++|+
T Consensus 88 v~~i-d~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~~i~-g~~~~~v~~~~~~~d~~~l~~~~~~~~~~vvViGgG~~g~ 165 (415)
T 3lxd_A 88 VVSL-DPAAHTVKLGDGSAIEYGKLIWATGGDPRRLSCV-GADLAGVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGL 165 (415)
T ss_dssp EEEE-ETTTTEEEETTSCEEEEEEEEECCCEECCCCBTT-SSCCBTEECCCSHHHHHHHHHHHHTTCCEEEEECCSHHHH
T ss_pred EEEE-ECCCCEEEECCCCEEEeeEEEEccCCccCCCCCC-CccccCEEEEcCHHHHHHHHHHhhhcCCeEEEECCCHHHH
Confidence 9999 8889999999999999999999999999999998 865 78888999998888776666 89999999999999
Q ss_pred HHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEE
Q psy2951 748 EAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVI 827 (1466)
Q Consensus 748 e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi 827 (1466)
|+|..|++.|.+|+++++.+.++...+++++.+.+.+.++++||++++++.+++++. +++++..+.+++|+++++|.||
T Consensus 166 e~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~-~~~~v~~v~l~dG~~i~aD~Vv 244 (415)
T 3lxd_A 166 EAAAVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEG-DGTKVTGVRMQDGSVIPADIVI 244 (415)
T ss_dssp HHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEE-SSSBEEEEEESSSCEEECSEEE
T ss_pred HHHHHHHhcCCeEEEEecCCchhhhhcCHHHHHHHHHHHHhCCCEEEECCEEEEEEe-cCCcEEEEEeCCCCEEEcCEEE
Confidence 999999999999999999999887778999999999999999999999999999984 4567778999999999999999
Q ss_pred EccccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCC
Q psy2951 828 VGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK 907 (1466)
Q Consensus 828 ~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~ 907 (1466)
+|+|.+|++++++.+|++.+ +| |.||++++|+.|+|||+|||+..+...+.|.+.++++|+.|..||+.||+||+|+.
T Consensus 245 ~a~G~~p~~~l~~~~gl~~~-~g-i~vd~~~~t~~~~iyA~GD~a~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~ 322 (415)
T 3lxd_A 245 VGIGIVPCVGALISAGASGG-NG-VDVDEFCRTSLTDVYAIGDCAAHANDFADGAVIRLESVQNANDMATAAAKDICGAP 322 (415)
T ss_dssp ECSCCEESCHHHHHTTCCCS-SS-EECCTTCBCSSTTEEECGGGEEEECGGGTTCEECCCSHHHHHHHHHHHHHHHTTCC
T ss_pred ECCCCccChHHHHhCCCCcC-CC-EEECCCCCcCCCCEEEEEeeeeecCcccCCcceeechHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999887 45 99999999999999999999998875532677888999999999999999999998
Q ss_pred CcCcccCeeeeeecCceeEEeeccCCCCceeEecccccceEEEEEecCCeEEEEEeecCchhhhhh
Q psy2951 908 TSLSTIPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTVGMDPLAAQF 973 (1466)
Q Consensus 908 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~g~~~~~~~~ 973 (1466)
..|+.+|+||+.+|+..+++.|...+.++.+..++.+...|.++++++++++|+..+|........
T Consensus 323 ~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 388 (415)
T 3lxd_A 323 VPYKATPWFWSNQYDLKLQTVGLSTGHDNAVLRGDPATRSFSVVYLKGGKVVALDCVNMVKDYVQG 388 (415)
T ss_dssp CCCCCCCEEEEEETTEEEEEEECCTTCSEEEEEEEGGGTEEEEEEEETTEEEEEEEESCHHHHHHH
T ss_pred CCCCCCCeeEeeeCCcEEEEEeCCCCCCEEEEEecCCCCeEEEEEEECCEEEEEEEECChHHHHHH
Confidence 889999999999999999999998877777777777788899999999999999999988655443
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-45 Score=438.15 Aligned_cols=370 Identities=26% Similarity=0.409 Sum_probs=331.2
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcc---cCcccccccCHhHhhhCCcEEEEceEE
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD---IKADSILLRTEEFYKDNDIHVIKGKKI 671 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~gv~~~~~~~v 671 (1466)
+++|+|||||+||++||..|+++|++.+|+++++++.++|..+.++..+. ...+.+ .+..+++.+.+++++.+++|
T Consensus 2 ~~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~~l~~~~~~g~~~~~~~-~~~~~~~~~~~i~~~~~~~v 80 (410)
T 3ef6_A 2 ATHVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPI-LAEADWYGEARIDMLTGPEV 80 (410)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSGGGGTHHHHTSSSSCCB-SSCTTHHHHTTCEEEESCCE
T ss_pred CCCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCccccHHHhCCCCCHHHh-cCCHHHHHHCCCEEEeCCEE
Confidence 36899999999999999999999999999999999999998887775332 345555 66778888999999999889
Q ss_pred EEeccccccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCC--cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHH
Q psy2951 672 ISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEA 749 (1466)
Q Consensus 672 ~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~ 749 (1466)
+.+ +...+.+.+.+++++.||+||||||++|+.|++| |.+ +++++++.+++..+.+.+..+++++|||+|++|+|+
T Consensus 81 ~~i-d~~~~~v~~~~g~~~~~d~lvlAtG~~p~~~~ip-G~~~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~E~ 158 (410)
T 3ef6_A 81 TAL-DVQTRTISLDDGTTLSADAIVIATGSRARTMALP-GSQLPGVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEV 158 (410)
T ss_dssp EEE-ETTTTEEEETTSCEEECSEEEECCCEEECCCCCT-TTTSTTEECCCSHHHHHHHHHHCCTTCEEEEECCSHHHHHH
T ss_pred EEE-ECCCCEEEECCCCEEECCEEEEccCCcccCCCCC-CccccceEEeccHHHHHHHHHHhccCCeEEEECCCHHHHHH
Confidence 999 8888999999999999999999999999999998 865 788899999998888777789999999999999999
Q ss_pred HHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEc
Q psy2951 750 AAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVG 829 (1466)
Q Consensus 750 A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a 829 (1466)
|..|++.|.+|+++++.+.++...+++++.+.+.+.++++||++++++.+++++. ++++..+.+++|+++++|.||+|
T Consensus 159 A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~--~~~~~~v~~~dg~~i~aD~Vv~a 236 (410)
T 3ef6_A 159 ATTARKLGLSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSG--EGQLEQVMASDGRSFVADSALIC 236 (410)
T ss_dssp HHHHHHTTCEEEEECSSSSSSHHHHCHHHHHHHHHHHHHHTCEEECSCCEEEEEC--SSSCCEEEETTSCEEECSEEEEC
T ss_pred HHHHHhCCCeEEEEecCCccchhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEec--cCcEEEEEECCCCEEEcCEEEEe
Confidence 9999999999999999998887778999999999999999999999999999984 33556788999999999999999
Q ss_pred cccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCCc
Q psy2951 830 IGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS 909 (1466)
Q Consensus 830 ~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~~ 909 (1466)
+|.+|++++++.+|++++ +| |.||++++|+.|+|||+|||+..+... +.+.++++|..|..||+.||++|+++...
T Consensus 237 ~G~~p~~~l~~~~gl~~~-~g-i~vd~~~~t~~~~IyA~GD~a~~~~~~--g~~~~~~~~~~A~~qg~~aa~~i~g~~~~ 312 (410)
T 3ef6_A 237 VGAEPADQLARQAGLACD-RG-VIVDHCGATLAKGVFAVGDVASWPLRA--GGRRSLETYMNAQRQAAAVAAAILGKNVS 312 (410)
T ss_dssp SCEEECCHHHHHTTCCBS-SS-EECCTTSBCSSTTEEECGGGEEEEBTT--SSEECCCCHHHHHHHHHHHHHHHTTCCCC
T ss_pred eCCeecHHHHHhCCCccC-Ce-EEEccCeeECCCCEEEEEcceeccCCC--CCeeeechHHHHHHHHHHHHHHHcCCCCC
Confidence 999999999999999887 44 999999999999999999999987653 56677889999999999999999999889
Q ss_pred CcccCeeeeeecCceeEEeeccCCCCceeEecccccceEEEEEecCCeEEEEEeecCchhhhhh
Q psy2951 910 LSTIPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTVGMDPLAAQF 973 (1466)
Q Consensus 910 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~g~~~~~~~~ 973 (1466)
|+.+|+||+.+|+.++.+.|.....++.+..++.+...|.+++.++++++|+..+|........
T Consensus 313 ~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 376 (410)
T 3ef6_A 313 APQLPVSWTEIAGHRMQMAGDIEGPGDFVSRGMPGSGAALLFRLQERRIQAVVAVDAPRDFALA 376 (410)
T ss_dssp CCBCCEEEEEETTEEEEEESCSSSSSEEEEESCTTSSSEEEEEEETTEEEEEEEESCHHHHHHH
T ss_pred CCCCCeeEEEECCceEEEEcCCCCCCEEEEEeeCCCCeEEEEEEECCEEEEEEEECChHHHHHH
Confidence 9999999999999999999998877777777777778899999999999999999997655443
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-44 Score=435.58 Aligned_cols=372 Identities=27% Similarity=0.457 Sum_probs=333.7
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcc---cCcccccccCHhHhhhCCcEEEEceEE
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD---IKADSILLRTEEFYKDNDIHVIKGKKI 671 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~gv~~~~~~~v 671 (1466)
+++|+|||||+||++||..|+++|++.+|+++++++.++|..+.++..+- .....+..+..+++.+.+++++. ++|
T Consensus 1 ~k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~-~~v 79 (404)
T 3fg2_P 1 NDTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFRPEKFFQDQAIELIS-DRM 79 (404)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGGGGTGGGGSCCCTTSSBSSCHHHHHHTTEEEEC-CCE
T ss_pred CCCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCccCCHHHHCCCCCHHHccCCCHHHHHhCCCEEEE-EEE
Confidence 37899999999999999999999997789999999999998877764332 34566777788889999999999 779
Q ss_pred EEeccccccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCC--cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHH
Q psy2951 672 ISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEA 749 (1466)
Q Consensus 672 ~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~ 749 (1466)
+.+ +...+.+.+.++.++.||+||+|||++|+.|++| |.+ +++++++.+++..+...+..+++++|||+|++|+|+
T Consensus 80 ~~i-d~~~~~v~~~~g~~~~~d~lvlAtG~~p~~~~i~-g~~~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~e~ 157 (404)
T 3fg2_P 80 VSI-DREGRKLLLASGTAIEYGHLVLATGARNRMLDVP-NASLPDVLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEF 157 (404)
T ss_dssp EEE-ETTTTEEEESSSCEEECSEEEECCCEEECCCCST-TTTSTTEECCSSHHHHHHHHHHGGGCSEEEEECCSHHHHHH
T ss_pred EEE-ECCCCEEEECCCCEEECCEEEEeeCCCccCCCCC-CCCCCcEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHH
Confidence 999 8888999999999999999999999999999998 865 788889999998887777779999999999999999
Q ss_pred HHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEc
Q psy2951 750 AAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVG 829 (1466)
Q Consensus 750 A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a 829 (1466)
|..+++.|.+|+++++.+.++...+++++.+.+.+.++++||++++++++++++. +++++..+.+++|+++++|.||+|
T Consensus 158 A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~-~~~~v~~V~~~dG~~i~aD~Vv~a 236 (404)
T 3fg2_P 158 AATARAKGLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAA-EGDRVTGVVLSDGNTLPCDLVVVG 236 (404)
T ss_dssp HHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTSCEEECSEEEEC
T ss_pred HHHHHhCCCEEEEEeCCCcchhhccCHHHHHHHHHHHHhCCcEEEECCEEEEEEe-cCCcEEEEEeCCCCEEEcCEEEEC
Confidence 9999999999999999998887778999999999999999999999999999984 345677899999999999999999
Q ss_pred cccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCCc
Q psy2951 830 IGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS 909 (1466)
Q Consensus 830 ~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~~ 909 (1466)
+|++|++++++.+|+.++ +| |.+|++++|+.|+|||+|||+..+... .|.+.++++|+.|..||+.||++|+|+...
T Consensus 237 ~G~~p~~~l~~~~gl~~~-~G-i~vd~~~~t~~~~iya~GD~a~~~~~~-~g~~~~~~~~~~A~~qg~~aa~~i~g~~~~ 313 (404)
T 3fg2_P 237 VGVIPNVEIAAAAGLPTA-AG-IIVDQQLLTSDPHISAIGDCALFESVR-FGETMRVESVQNATDQARCVAARLTGDAKP 313 (404)
T ss_dssp CCEEECCHHHHHTTCCBS-SS-EEECTTSBCSSTTEEECGGGEEEEETT-TTEEECCCSHHHHHHHHHHHHHHTTTCCCC
T ss_pred cCCccCHHHHHhCCCCCC-CC-EEECCCcccCCCCEEEeecceeecCcc-CCceeeehHHHHHHHHHHHHHHHhCCCCCC
Confidence 999999999999999887 45 999999999999999999999987654 466778889999999999999999999888
Q ss_pred CcccCeeeeeecCceeEEeeccCCCCceeEecccccceEEEEEecCCeEEEEEeecCchhhhhh
Q psy2951 910 LSTIPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTVGMDPLAAQF 973 (1466)
Q Consensus 910 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~g~~~~~~~~ 973 (1466)
|+.+|+||+.+|+..+++.|.....++.+..++.+...|.++++++++++|+..+|........
T Consensus 314 ~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 377 (404)
T 3fg2_P 314 YDGYPWFWSDQGDDKLQIVGLTAGFDQVVIRGSVAERSFSAFCYKAGKLIGIESVNRAADHVFG 377 (404)
T ss_dssp CCCCCEEEEEETTEEEEEEECCTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEESCHHHHHHH
T ss_pred CCCCCceEeEECCcEEEEEeCCCCCCEEEEEecCCCCcEEEEEEECCEEEEEEEeCCHHHHHHH
Confidence 9999999999999999999998877777777777788899999999999999999988655443
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-44 Score=427.67 Aligned_cols=354 Identities=21% Similarity=0.295 Sum_probs=299.9
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhc--cCcccccccChhhhccCCcEEEcCCeEE
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD--IKADSILLRTEEFYKDNDIHVIKGKKII 1143 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 1143 (1466)
..++||||||+||++||..|++.| +|+|||++++.+|.++.+++.+. ...+.+..+..+++++.+++++.+++|+
T Consensus 8 ~~~vvIIGgG~AGl~aA~~l~~~g---~V~lie~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~g~~v~ 84 (367)
T 1xhc_A 8 GSKVVIVGNGPGGFELAKQLSQTY---EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAK 84 (367)
T ss_dssp -CEEEEECCSHHHHHHHHHHTTTS---EEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEE
T ss_pred CCcEEEECCcHHHHHHHHHHhhcC---CEEEEECCCCCccccchhHHHHhCCCCHHHhccCCHHHHHhCCcEEEECCEEE
Confidence 358999999999999999999987 99999999999998888877653 3445555566778888899999998899
Q ss_pred EeecCCCCeEEecCCcEEecCeEEEecCCCCCcCCCCCCCCcEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHH
Q psy2951 1144 SDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAF 1223 (1466)
Q Consensus 1144 ~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~ 1223 (1466)
.+ |+..+.|. .++.++.||+||||||++|+.|++| |.++++++++.+++.++++.+.++++++|||+|++|+|+|..
T Consensus 85 ~i-d~~~~~V~-~~g~~~~~d~lViATGs~p~~p~i~-G~~~v~~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~~ 161 (367)
T 1xhc_A 85 LI-DRGRKVVI-TEKGEVPYDTLVLATGARAREPQIK-GKEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGN 161 (367)
T ss_dssp EE-ETTTTEEE-ESSCEEECSEEEECCCEEECCCCSB-TGGGEECCCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHH
T ss_pred EE-ECCCCEEE-ECCcEEECCEEEECCCCCCCCCCCC-CcCCEEEEcCHHHHHHHHHHhhcCCcEEEECCCHHHHHHHHH
Confidence 99 99989888 7888999999999999999999999 866899899999999888776667999999999999999999
Q ss_pred HhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeecc
Q psy2951 1224 CASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGT 1303 (1466)
Q Consensus 1224 l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~ 1303 (1466)
|++.|.+|+++++.+++++ +++++.+.+.+.++++||+++++++|++++ . + .|.+++|+ +++|.||+|+|.
T Consensus 162 l~~~g~~Vtlv~~~~~~l~--~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~-~-~----~v~~~~g~-i~~D~vi~a~G~ 232 (367)
T 1xhc_A 162 LAEAGYHVKLIHRGAMFLG--LDEELSNMIKDMLEETGVKFFLNSELLEAN-E-E----GVLTNSGF-IEGKVKICAIGI 232 (367)
T ss_dssp HHHTTCEEEEECSSSCCTT--CCHHHHHHHHHHHHHTTEEEECSCCEEEEC-S-S----EEEETTEE-EECSCEEEECCE
T ss_pred HHhCCCEEEEEeCCCeecc--CCHHHHHHHHHHHHHCCCEEEcCCEEEEEE-e-e----EEEECCCE-EEcCEEEECcCC
Confidence 9999999999999998887 899999999999999999999999999996 2 2 37788887 999999999999
Q ss_pred ccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCCCCCCCC
Q psy2951 1304 VLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSLST 1383 (1466)
Q Consensus 1304 ~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~~~~~~ 1383 (1466)
.|++++++..|+..+ +| |.||+++||+.|+|||+|||+..+... ...|..|..||+.||+||+|...+|..
T Consensus 233 ~p~~~ll~~~gl~~~-~g-i~Vd~~~~t~~~~IyA~GD~a~~~~~~-------~~~~~~A~~qg~~aa~~i~g~~~~~~~ 303 (367)
T 1xhc_A 233 VPNVDLARRSGIHTG-RG-ILIDDNFRTSAKDVYAIGDCAEYSGII-------AGTAKAAMEQARVLADILKGEPRRYNF 303 (367)
T ss_dssp EECCHHHHHTTCCBS-SS-EECCTTSBCSSTTEEECGGGEEBTTBC-------CCSHHHHHHHHHHHHHHHTTCCCCCCS
T ss_pred CcCHHHHHhCCCCCC-CC-EEECCCcccCCCCEEEeEeeeecCCCC-------ccHHHHHHHHHHHHHHHhcCCCccCCC
Confidence 999999999999876 45 999999999999999999999764321 246899999999999999998777877
Q ss_pred Cccce-eccccccEEEEeeCCCCceEEEcCCcCCceEEEEEEeCCEEEEEEEecCcHHHHHHHHHHHc
Q psy2951 1384 IPFFW-TMLFGVGFRFAGYAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTVGMDPLAAQFAERIKM 1450 (1466)
Q Consensus 1384 ~p~~w-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1450 (1466)
.+++| ..+++..+..+|..+..... + ..|+++++++++++|+.++|...++..++++|.+
T Consensus 304 ~~~~~~~~~~~~~~~~vG~~~~~~~~-~------~~~~k~~~~~~~ilG~~~~g~~~~~~~~~~~i~~ 364 (367)
T 1xhc_A 304 KFRSTVFKFGKLQIAIIGNTKGEGKW-I------EDNTKVFYENGKIIGAVVFNDIRKATKLEKEILD 364 (367)
T ss_dssp SCCEEEEEETTEEEEEEECCSSCEEE-E------ETTEEEEC-----CEEEEESCHHHHHHHC-----
T ss_pred CCCceEEEECCceEEEECCCCCCCcc-c------ceEEEEEEECCEEEEEEEECChHHHHHHHHHHhh
Confidence 66665 57899999999987653321 1 3478888889999999999999999999998744
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-44 Score=422.27 Aligned_cols=351 Identities=22% Similarity=0.377 Sum_probs=307.4
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcc--cCcccccccCHhHhhhCCcEEEEce
Q psy2951 592 SGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD--IKADSILLRTEEFYKDNDIHVIKGK 669 (1466)
Q Consensus 592 ~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~gv~~~~~~ 669 (1466)
..++++|+|||||+||++||..|++.+ .+|+++++++.++|..+.++..+. .+.+++..+..+++++.++++++++
T Consensus 6 ~~~~~~~vIvGgG~AGl~aA~~L~~~~--~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~ 83 (385)
T 3klj_A 6 HHKSTKILILGAGPAGFSAAKAALGKC--DDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSE 83 (385)
T ss_dssp --CBCSEEEECCSHHHHHHHHHHTTTC--SCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEECSC
T ss_pred ccCCCCEEEEcCcHHHHHHHHHHhCCC--CEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEeCC
Confidence 345789999999999999999995444 459999999999998888877654 4566778888899999999999999
Q ss_pred EEEEeccccccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHH
Q psy2951 670 KIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEA 749 (1466)
Q Consensus 670 ~v~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~ 749 (1466)
+|+.+ |.+.+++++++++++.||+||||||++|+.|++| |.++++++++.+++..+.+.+..+++|+|||+|++|+|+
T Consensus 84 ~V~~i-d~~~~~v~~~~g~~~~yd~lvlAtG~~p~~p~i~-G~~~v~~~~~~~d~~~l~~~l~~~~~vvVIGgG~~g~E~ 161 (385)
T 3klj_A 84 FATSI-DPNNKLVTLKSGEKIKYEKLIIASGSIANKIKVP-HADEIFSLYSYDDALKIKDECKNKGKAFIIGGGILGIEL 161 (385)
T ss_dssp CEEEE-ETTTTEEEETTSCEEECSEEEECCCEEECCCCCT-TCSCEECCSSHHHHHHHHHHHHHHSCEEEECCSHHHHHH
T ss_pred EEEEE-ECCCCEEEECCCCEEECCEEEEecCCCcCCCCCC-CCCCeEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHH
Confidence 89999 9999999999999999999999999999999999 888888899999998887766668999999999999999
Q ss_pred HHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEc
Q psy2951 750 AAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVG 829 (1466)
Q Consensus 750 A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a 829 (1466)
|..|++.|.+||++++.+.++...+++++.+.+.+.+++.||+++++..++++ |+++++|.||+|
T Consensus 162 A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i---------------g~~~~~D~vv~a 226 (385)
T 3klj_A 162 AQAIIDSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNFEEM---------------GDLIRSSCVITA 226 (385)
T ss_dssp HHHHHHHTCCEEEECSSSSSCTTTSCHHHHHHHHHHHHTTTCEEECSCCGGGC---------------HHHHHHSEEEEC
T ss_pred HHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhCCCEEEeCCEEEEc---------------CeEEecCeEEEC
Confidence 99999999999999999998877789999999999999999999998877654 567899999999
Q ss_pred cccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCCc
Q psy2951 830 IGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS 909 (1466)
Q Consensus 830 ~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~~ 909 (1466)
+|++|++++++.+|++.+ +| |.||++++|+.|+|||+|||+..+... +++|..|..||+.||.+|+++...
T Consensus 227 ~G~~p~~~~~~~~gl~~~-~g-i~vd~~~~t~~~~IyA~GD~a~~~~~~-------~~~~~~A~~qg~~aa~~i~g~~~~ 297 (385)
T 3klj_A 227 VGVKPNLDFIKDTEIASK-RG-ILVNDHMETSIKDIYACGDVAEFYGKN-------PGLINIANKQGEVAGLNACGEDAS 297 (385)
T ss_dssp CCEEECCGGGTTSCCCBS-SS-EEECTTCBCSSTTEEECGGGEEETTBC-------CCCHHHHHHHHHHHHHHHTTCCCC
T ss_pred cCcccChhhhhhcCCCcC-CC-EEECCCcccCCCCEEEEEeeEecCCCc-------ccHHHHHHHHHHHHHHHhcCCCcC
Confidence 999999999999999876 44 999999999999999999999876432 247889999999999999998888
Q ss_pred Ccc-cCeeeeeecCceeEEeeccCCC-CceeEecccccceEEEEEecCCeEEEEEeecCchhhh
Q psy2951 910 LST-IPFFWTMLFGVGFRFAGYAAGH-TQVDIVGDLEALKFTAYYSNADKVLAILTVGMDPLAA 971 (1466)
Q Consensus 910 ~~~-~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~g~~~~~~ 971 (1466)
+.. +|++|+.+|+..+.++|..+.. .+.+.. +.++..|.++++++++++|+..+|......
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~g~~~~g~~~~~~ 360 (385)
T 3klj_A 298 YSEIIPSPILKVSGISIISCGDIENNKPSKVFR-STQEDKYIVCMLKENKIDAAAVIGDVSLGT 360 (385)
T ss_dssp CCCCCCCCEEEETTEEEEEESCCTTCCCSEEEE-EECSSCEEEEEEETTEEEEEEEESCHHHHH
T ss_pred CCCCCCcEEEEeCCCcEEEEcCCCCCCCeEEEE-ECCCCeEEEEEEECCEEEEEEEECCcHHHH
Confidence 876 6999999999999999988754 333433 556778999999999999999999986554
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-42 Score=418.57 Aligned_cols=371 Identities=29% Similarity=0.484 Sum_probs=322.6
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcc---cCcccccccCHhHhhhCCcEEEEceEE
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD---IKADSILLRTEEFYKDNDIHVIKGKKI 671 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~gv~~~~~~~v 671 (1466)
.++|+|||||+||++||..|+++|++..|++++++++++|..+.+++.+- ...+.+.....+++++.+++++.+++|
T Consensus 4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v 83 (431)
T 1q1r_A 4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQV 83 (431)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCCE
T ss_pred CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCCCCcHHHhCCCCChHHhcccCHHHHHhCCCEEEeCCEE
Confidence 58999999999999999999999997789999999888887665554322 233444455667788899999999989
Q ss_pred EEeccccccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCC--c---EEEecCHHHHHhhcccCCCCCcEEEECCChHH
Q psy2951 672 ISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN--K---VFYLRTVEDANNIAPHITPESNVVVIGSSFIG 746 (1466)
Q Consensus 672 ~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~--~---~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g 746 (1466)
..+ +...+.+.+.+++++.||+||+|||++|+.|+++ |.+ + ++++++.+++..+.+.+..+++|+|||+|++|
T Consensus 84 ~~i-~~~~~~v~~~~g~~~~~d~lviAtG~~p~~~~i~-G~~~~~~~~v~~~~~~~d~~~l~~~l~~~~~vvViGgG~~g 161 (431)
T 1q1r_A 84 TAI-NRDRQQVILSDGRALDYDRLVLATGGRPRPLPVA-SGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIG 161 (431)
T ss_dssp EEE-ETTTTEEEETTSCEEECSEEEECCCEEECCCGGG-TTHHHHSTTEEESSSHHHHHHHHHTCCTTCEEEEECCSHHH
T ss_pred EEE-ECCCCEEEECCCCEEECCEEEEcCCCCccCCCCC-CcccCCCceEEEECCHHHHHHHHHHhhcCCeEEEECCCHHH
Confidence 999 7777889988888999999999999999999998 876 5 88889999998888777779999999999999
Q ss_pred HHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEec-CCCceEEEECCCCcEEecCE
Q psy2951 747 MEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKN-EKNDVTAANLDNGTTIPADL 825 (1466)
Q Consensus 747 ~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~-~~~~~~~v~~~~g~~i~~D~ 825 (1466)
+|+|..|++.|.+|+++++.+.++...+++++.+.+.+.+++.||++++++++++++.. +++++..+.+++|+++++|.
T Consensus 162 ~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~ 241 (431)
T 1q1r_A 162 LEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADL 241 (431)
T ss_dssp HHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSE
T ss_pred HHHHHHHHhCCCEEEEEEeCCccccchhhHHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCE
Confidence 99999999999999999999988766689999999999999999999999999999841 34566678889999999999
Q ss_pred EEEccccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhcc
Q psy2951 826 VIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVE 905 (1466)
Q Consensus 826 vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~ 905 (1466)
||+|+|++|++++++.+|++++ +| |.||++++|+.|+|||+|||+..+... .+.+.+++++..|..||+.+|.||++
T Consensus 242 Vv~a~G~~p~~~l~~~~gl~~~-~g-i~Vd~~~~ts~~~IyA~GD~~~~~~~~-~g~~~~~~~~~~A~~qg~~aa~~i~g 318 (431)
T 1q1r_A 242 VIAGIGLIPNCELASAAGLQVD-NG-IVINEHMQTSDPLIMAVGDCARFHSQL-YDRWVRIESVPNALEQARKIAAILCG 318 (431)
T ss_dssp EEECCCEEECCHHHHHTTCCBS-SS-EECCTTSBCSSTTEEECGGGEEEEETT-TTEEEECCSHHHHHHHHHHHHHHHTT
T ss_pred EEECCCCCcCcchhhccCCCCC-CC-EEECCCcccCCCCEEEEEeEEEEcccc-CCceEeeCHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999886 45 999999999999999999999887644 45666778999999999999999999
Q ss_pred CCCcCcccCeeeeeecCceeEEeeccCCCCceeEecccccceEEEEEecCCeEEEEEeecCchhh
Q psy2951 906 KKTSLSTIPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTVGMDPLA 970 (1466)
Q Consensus 906 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~g~~~~~ 970 (1466)
....++.+|++|+..|+..+...|......+....++.+...|.+++.++++++|++.+|.....
T Consensus 319 ~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~g~~~~~ 383 (431)
T 1q1r_A 319 KVPRDEAAPWFWSDQYEIGLKMVGLSEGYDRIIVRGSLAQPDFSVFYLQGDRVLAVDTVNRPVEF 383 (431)
T ss_dssp CCCCCCCCCEEEEEETTEEEEEEECCTTCSEEEEEEETTTTEEEEEEEETTEEEEEEEESCHHHH
T ss_pred CCCCCCCCCeEEEEECCceEEEEeCCCCCCEEEEEccCCCCeEEEEEEeCCEEEEEEEECChHHH
Confidence 88888999999999999999999988766666666666666788888889999999999987543
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-42 Score=411.91 Aligned_cols=362 Identities=26% Similarity=0.422 Sum_probs=311.8
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcc--cCcccccccCHhHhhhCCcEEEEceEE
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD--IKADSILLRTEEFYKDNDIHVIKGKKI 671 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~gv~~~~~~~v 671 (1466)
.+++|+|||||+||+++|..|+++|++.+|++++++++++|..+.++..+- ...+++..+ ++++.+++++.+++|
T Consensus 6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~v 82 (408)
T 2gqw_A 6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLD---CKRAPEVEWLLGVTA 82 (408)
T ss_dssp CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTHHHHHCCGGGSBCC---CTTSCSCEEEETCCE
T ss_pred CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcccCCCCCHHHhCCCchhhhhHH---HHHHCCCEEEcCCEE
Confidence 458999999999999999999999997789999999988887766554321 112222221 567789999999989
Q ss_pred EEeccccccEEEccCCCEEecCEEEEcCCCCCCcCCC-CCCCC-cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHH
Q psy2951 672 ISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQ-ADGVN-KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEA 749 (1466)
Q Consensus 672 ~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~-~~g~~-~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~ 749 (1466)
+.+ +...+++.++++.++.||+||||||++|+.|++ + |.+ +++++++.+++..+.+.+..+++|+|||+|++|+|+
T Consensus 83 ~~i-~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~i~~-G~~~~v~~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~ 160 (408)
T 2gqw_A 83 QSF-DPQAHTVALSDGRTLPYGTLVLATGAAPRALPTLQ-GATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLEL 160 (408)
T ss_dssp EEE-ETTTTEEEETTSCEEECSEEEECCCEEECCCGGGT-TCSSCEEECCSHHHHHHHHTTCCTTCEEEEECCSHHHHHH
T ss_pred EEE-ECCCCEEEECCCCEEECCEEEECCCCCCCCCCccC-CCCCcEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHH
Confidence 999 888889999888899999999999999999998 8 875 788889999998887777779999999999999999
Q ss_pred HHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEc
Q psy2951 750 AAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVG 829 (1466)
Q Consensus 750 A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a 829 (1466)
|..|++.|.+|+++++.+.++...+++++.+.+.+.++++||++++++++++++ + + .+.+++|+++++|.||+|
T Consensus 161 A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~-~-~----~v~~~~g~~i~~D~vi~a 234 (408)
T 2gqw_A 161 AATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSV-D-G----VVLLDDGTRIAADMVVVG 234 (408)
T ss_dssp HHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEE-T-T----EEEETTSCEEECSEEEEC
T ss_pred HHHHHhCCCEEEEEEeCCcccccccCHHHHHHHHHHHHHcCcEEEeCCEEEEEE-C-C----EEEECCCCEEEcCEEEEC
Confidence 999999999999999999888666899999999999999999999999999998 3 2 567788999999999999
Q ss_pred cccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCC-
Q psy2951 830 IGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT- 908 (1466)
Q Consensus 830 ~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~- 908 (1466)
+|++|++++++.+|++++ +| |.||+++||+.|+|||+|||+..+... .|.+.+++++..|..||+.+|.||++...
T Consensus 235 ~G~~p~~~l~~~~gl~~~-~g-i~Vd~~~~t~~~~IyA~GD~~~~~~~~-~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~ 311 (408)
T 2gqw_A 235 IGVLANDALARAAGLACD-DG-IFVDAYGRTTCPDVYALGDVTRQRNPL-SGRFERIETWSNAQNQGIAVARHLVDPTAP 311 (408)
T ss_dssp SCEEECCHHHHHHTCCBS-SS-EECCTTCBCSSTTEEECGGGEEEEETT-TTEEECCCCHHHHHHHHHHHHHHHHCTTSC
T ss_pred cCCCccHHHHHhCCCCCC-CC-EEECCCCccCCCCEEEEEEEEEecCcc-CCceeeccHHHHHHHHHHHHHHHhcCCCCC
Confidence 999999999988899886 45 999999999999999999999887543 35556677899999999999999999877
Q ss_pred cCcccCeeeeeecCceeEEeeccCCCCceeEecccc--cceEEEEEecCCeEEEEEeecCchhh
Q psy2951 909 SLSTIPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLE--ALKFTAYYSNADKVLAILTVGMDPLA 970 (1466)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~g~~~~g~~~~~ 970 (1466)
.++.+|++|+.+|+..+.++|. +...+....++.. ...|.+++.++++++|++.+|.....
T Consensus 312 ~~~~~p~~~~~~~~~~~~~~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~g~~~~~ 374 (408)
T 2gqw_A 312 GYAELPWYWSDQGALRIQVAGL-ASGDEEIVRGEVSLDAPKFTLIELQKGRIVGATCVNNARDF 374 (408)
T ss_dssp CCCCCCEEEEEETTEEEEEEEC-SCCSEEEEESCCCSSSCCEEEEEEETTEEEEEEEESCHHHH
T ss_pred cCCCCCeEEEEECCceEEEECC-CCCCEEEEEccCCCCCCeEEEEEEeCCEEEEEEEECChHHH
Confidence 8889999999999999999998 5556666666554 56788888899999999999987543
|
| >4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-42 Score=415.23 Aligned_cols=383 Identities=18% Similarity=0.312 Sum_probs=313.2
Q ss_pred CcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhcc----CcccccccChhhhccCCcEEEcCCeE
Q psy2951 1067 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDI----KADSILLRTEEFYKDNDIHVIKGKKI 1142 (1466)
Q Consensus 1067 ~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~v 1142 (1466)
+||||||||+||++||..|++.|++.+|+|||++++.+|.++.+++.+.. ....+..+..+++++.+++++.+++|
T Consensus 1 PKVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V 80 (437)
T 4eqs_A 1 PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYVIGEVVEDRRYALAYTPEKFYDRKQITVKTYHEV 80 (437)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGGGHHHHHTTSSCCGGGTBCCCHHHHHHHHCCEEEETEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcchhHHHHcCCccchhhhhhcCHHHHHHhcCCEEEeCCeE
Confidence 47999999999999999999999888999999999999999888766541 12223344557788889999999999
Q ss_pred EEeecCCCCeEEecCC-----cEEecCeEEEecCCCCCcCCCCCCCCcEEEecCHHHHHhhhcccC--CCCeEEEEcCCH
Q psy2951 1143 ISDSELNEKKIKLQDG-----TSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHIT--PESNVVVIGSSF 1215 (1466)
Q Consensus 1143 ~~i~d~~~~~v~~~~g-----~~~~yd~lvlAtG~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~--~~~~vvVvG~g~ 1215 (1466)
+.| |+..+.+.+.++ .++.||+||||||++|+.|+++ | ++++.+++.+++.++++.+. ..++++|||+|+
T Consensus 81 ~~i-d~~~~~~~~~~~~~~~~~~~~yd~lVIATGs~p~~p~i~-g-~~~~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~ 157 (437)
T 4eqs_A 81 IAI-NDERQTVSVLNRKTNEQFEESYDKLILSPGASANSLGFE-S-DITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGY 157 (437)
T ss_dssp EEE-ETTTTEEEEEETTTTEEEEEECSEEEECCCEEECCCCCC-C-TTEECCSSHHHHHHHHHHHHHHTCCEEEEECCSH
T ss_pred EEE-EccCcEEEEEeccCCceEEEEcCEEEECCCCcccccccc-C-ceEEeeccHHHHHHHHHhhhccCCcEEEEECCcc
Confidence 999 999998877533 3689999999999999998887 6 47888999999988876643 478999999999
Q ss_pred HHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecC
Q psy2951 1216 IGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPAD 1295 (1466)
Q Consensus 1216 ~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D 1295 (1466)
+|+|+|..+++.|.+||++++.++.++ .+++++.+.+.+.++++||+++++++|++++ +. .+.+++|+++++|
T Consensus 158 ig~E~A~~l~~~g~~Vtlv~~~~~ll~-~~d~~~~~~~~~~l~~~gV~i~~~~~v~~~~-~~-----~v~~~~g~~~~~D 230 (437)
T 4eqs_A 158 VSLEVLENLYERGLHPTLIHRSDKINK-LMDADMNQPILDELDKREIPYRLNEEINAIN-GN-----EITFKSGKVEHYD 230 (437)
T ss_dssp HHHHHHHHHHHHTCEEEEEESSSCCST-TSCGGGGHHHHHHHHHTTCCEEESCCEEEEE-TT-----EEEETTSCEEECS
T ss_pred chhhhHHHHHhcCCcceeeeeeccccc-cccchhHHHHHHHhhccceEEEeccEEEEec-CC-----eeeecCCeEEeee
Confidence 999999999999999999999988775 6788999999999999999999999999997 32 3888999999999
Q ss_pred EEEEeeccccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhc
Q psy2951 1296 LVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMV 1375 (1466)
Q Consensus 1296 ~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~ 1375 (1466)
.|++|+|..||+++++.+|+.++.+|+|.||+++||++|+|||+|||+..|+.. .+.+.+...|+.|..||++||+||+
T Consensus 231 ~vl~a~G~~Pn~~~~~~~gl~~~~~G~I~vd~~~~Ts~p~IyA~GDva~~~~~~-~~~~~~~~~a~~A~~~g~~~a~ni~ 309 (437)
T 4eqs_A 231 MIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRH-VDLPASVPLAWGAHRAASIVAEQIA 309 (437)
T ss_dssp EEEECCCEEESCGGGTTSSCCCCTTSCEECCTTCBCSSTTEEECGGGEEEEBSS-SSSEECCCSHHHHHHHHHHHHHHHH
T ss_pred eEEEEeceecCcHHHHhhhhhhccCCcEecCCCccCCCCCEEEEEEccCccccc-CCccccchhHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999998875 5778888999999999999999999
Q ss_pred CCCC-CCC-CCccceeccccccEEEEeeCC------CCceEEEcC-C------cCCceEEEEEEe--CCEEEEEEEecCc
Q psy2951 1376 EKKT-SLS-TIPFFWTMLFGVGFRFAGYAA------GHTQVDIVG-D------LEALKFTAYYSN--ADKVLAILTVGMD 1438 (1466)
Q Consensus 1376 g~~~-~~~-~~p~~w~~~~~~~~~~~g~~~------~~~~~~~~~-~------~~~~~~~~~~~~--~~~~~~~~~~~~~ 1438 (1466)
|... ++. ..+..|...++..+-.+|+.+ ++..+.+.. + -++..|++.+++ +++++|+..+|..
T Consensus 310 g~~~~~~~~~~~~~~~~~~~p~ia~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilGa~~~g~~ 389 (437)
T 4eqs_A 310 GNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQFDYKMVEVTQGAHANYYPGNSPLHLRVYYDTSNRQILRAAAVGKE 389 (437)
T ss_dssp SCTTCCCCCBCCCEEEEETTEEEEEEESCGGGGGGSCEEEEEEEEESSCTTSSSCCEEEEEEEEETTTCBEEEEEEEESS
T ss_pred CCCCcccccceeEEeeeeccceEEEeeCCHHHHHhCCceEEEEecCCchhhcCCCCcEEEEEEEECCCCEEEEEEEECcC
Confidence 9764 332 333334445667777778753 111111110 0 023457777774 5899999999963
Q ss_pred --H-HHHHHHHHHHcCCCCChhccccc
Q psy2951 1439 --P-LAAQFAERIKMQKYIQKDQIENN 1462 (1466)
Q Consensus 1439 --~-~~~~~~~~~~~~~~~~~~~~~~~ 1462 (1466)
. .+..+.-+|+.+ ++.++|++.
T Consensus 390 ~a~e~i~~~~~ai~~~--~t~~~l~~~ 414 (437)
T 4eqs_A 390 GADKRIDVLSMAMMNQ--LTVDELTEF 414 (437)
T ss_dssp SHHHHHHHHHHHHHTT--CBGGGGGGC
T ss_pred CHHHHHHHHHHHHHcC--CcHHHHhcC
Confidence 3 345556678777 566677554
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-41 Score=417.47 Aligned_cols=390 Identities=20% Similarity=0.304 Sum_probs=302.5
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhc---cCcccc------cccChhhhc-cCCcE
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD---IKADSI------LLRTEEFYK-DNDIH 1135 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~---~~~~~~------~~~~~~~~~-~~~v~ 1135 (1466)
+++|||||||+||++||..|++.+...+|+|||++++++|.++.++..+. ...+.+ ..+..+++. ..+++
T Consensus 3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 82 (472)
T 3iwa_A 3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQATPYNVVRDPEFFRINKDVE 82 (472)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC-------------------------------------------CE
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccccccccchhhcCCCCchHHhccccchhccCHHHHhhhcCcE
Confidence 46899999999999999999999444499999999999998876665443 122222 233344454 47999
Q ss_pred EEcCCeEEEeecCCCCeEEecC---Cc--EEecCeEEEecCCCCCcCCCCCCCC--cEEEecCHHHHHhhhcccC--CCC
Q psy2951 1136 VIKGKKIISDSELNEKKIKLQD---GT--SIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHIT--PES 1206 (1466)
Q Consensus 1136 ~~~~~~v~~i~d~~~~~v~~~~---g~--~~~yd~lvlAtG~~~~~~~~~~g~~--~v~~~~~~~~~~~l~~~~~--~~~ 1206 (1466)
++.+++|+.+ |+..+.+.+.+ |. .+.||+||+|||++|+.|++| |.+ +++++++.+++..+++.+. .++
T Consensus 83 ~~~~~~V~~i-d~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~i~-G~~~~~v~~~~~~~~~~~l~~~l~~~~~~ 160 (472)
T 3iwa_A 83 ALVETRAHAI-DRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRPPVE-GMDLAGVTPVTNLDEAEFVQHAISAGEVS 160 (472)
T ss_dssp EECSEEEEEE-ETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCSCT-TTTSBTEEECCSHHHHHHHHHHCCTTSCS
T ss_pred EEECCEEEEE-ECCCCEEEEeecCCCCEEEEECCEEEEeCCCCcCCCCCC-CCCCCCEEEeCCHHHHHHHHHHhhcCCCC
Confidence 9999999999 99999998875 66 789999999999999999999 876 8999999999988887664 379
Q ss_pred eEEEEcCCHHHHHHHHHHhcC-CCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEE
Q psy2951 1207 NVVVIGSSFIGMEAAAFCASK-VKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAAN 1285 (1466)
Q Consensus 1207 ~vvVvG~g~~g~e~a~~l~~~-g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~ 1285 (1466)
+++|||+|++|+|+|..+++. |.+|+++++.+.++++.+++++.+.+.+.+++.||+++++++|++++ .+++++. +.
T Consensus 161 ~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~-~~~~~v~-v~ 238 (472)
T 3iwa_A 161 KAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLE-GENGKVA-RV 238 (472)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEE-ESSSBEE-EE
T ss_pred EEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccccccCHHHHHHHHHHHHhcCCEEEeCCEEEEEE-ccCCeEE-EE
Confidence 999999999999999999999 99999999999888878899999999999999999999999999998 4455544 78
Q ss_pred cCCCCeeecCEEEEeeccccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHH
Q psy2951 1286 LDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQY 1365 (1466)
Q Consensus 1286 l~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~ 1365 (1466)
+.+|+++++|.||+|+|..|++++++..|+.++.+|+|.||++++|+.|+|||+|||+..+... .|.+.+.++|+.|..
T Consensus 239 ~~~g~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~-~g~~~~~~~~~~A~~ 317 (472)
T 3iwa_A 239 ITDKRTLDADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRTSDPDIFAGGDCVTIPNLV-TGKPGFFPLGSMANR 317 (472)
T ss_dssp EESSCEEECSEEEECSCEEECCHHHHHHTCCBCTTCCEECCTTCBCSSTTEEECGGGEEEEBTT-TSSEECCCCTTHHHH
T ss_pred EeCCCEEEcCEEEECCCCCcCHHHHHhCCccCCCCCCEEECCCcccCCCCEEEeccceeccccc-CCceeecchHHHHHH
Confidence 8899999999999999999999998888999998899999999999999999999999988765 467777889999999
Q ss_pred HHHHHHHHhcCCCCCCC-CCccceeccccccEEEEeeCC------CCceEE--EcCC-------cCCceEEEEEEe--CC
Q psy2951 1366 HGRIAALNMVEKKTSLS-TIPFFWTMLFGVGFRFAGYAA------GHTQVD--IVGD-------LEALKFTAYYSN--AD 1427 (1466)
Q Consensus 1366 qa~~aa~~i~g~~~~~~-~~p~~w~~~~~~~~~~~g~~~------~~~~~~--~~~~-------~~~~~~~~~~~~--~~ 1427 (1466)
||++||+||+|...++. .+|++|+.+|+..+..+|+.+ +.+-.+ .... -++..|++.+++ ++
T Consensus 318 ~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~ 397 (472)
T 3iwa_A 318 QGRVIGTNLADGDATFPGAVGSWAVKLFEGSASGAGLTVEGALREGYDAVNVHVEQFDRAHFYPEKTIMTLQLVVDRPTR 397 (472)
T ss_dssp HHHHHHHHHTTCCCCCCCBCCCEEEECSSCEEEEEECCHHHHHHTTCCEEEEEEEC-----------CEEEEEEEETTTC
T ss_pred HHHHHHHHhcCCCccCCCCCcceEEEECCceeEEEECCHHHHHHcCCceEEEEEecCCccCccCCCceEEEEEEEECCCC
Confidence 99999999999877665 467889999999999999863 222111 1110 123457777774 68
Q ss_pred EEEEEEEecC-----cHHHHHHHHHHHcCCCCChhccccc
Q psy2951 1428 KVLAILTVGM-----DPLAAQFAERIKMQKYIQKDQIENN 1462 (1466)
Q Consensus 1428 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 1462 (1466)
+|+|+..+|. ...+..+.-+|+.+ ++.++|++.
T Consensus 398 ~ilG~~~~g~~~~~~~~~i~~~~~ai~~~--~t~~~l~~~ 435 (472)
T 3iwa_A 398 RVLGIQGFSTLGDALTARINAVATMLASK--PTVEDISNA 435 (472)
T ss_dssp BEEEEEEEESCHHHHHHHHHHHHHHHTTC--CBHHHHHTC
T ss_pred EEEEEEEECCCcccHHHHHHHHHHHHHcC--CCHHHHhcc
Confidence 9999999999 24455555667666 556666444
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-41 Score=411.28 Aligned_cols=385 Identities=22% Similarity=0.318 Sum_probs=315.5
Q ss_pred CcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhc---c--CcccccccChhhhccCCcEEEcCCe
Q psy2951 1067 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD---I--KADSILLRTEEFYKDNDIHVIKGKK 1141 (1466)
Q Consensus 1067 ~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~---~--~~~~~~~~~~~~~~~~~v~~~~~~~ 1141 (1466)
++|||||||+||+++|..|++.+...+|+|||++++.+|....+..... . ..+.+.....+++.+.+++++.+++
T Consensus 1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~ 80 (452)
T 2cdu_A 1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSCGIALYLGKEIKNNDPRGLFYSSPEELSNLGANVQMRHQ 80 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGGGHHHHHTTCBGGGCGGGGBSCCHHHHHHTTCEEEESEE
T ss_pred CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcccccchhhhcCCcccCCHHHhhhcCHHHHHHcCCEEEeCCE
Confidence 3799999999999999999998333499999999988876544332222 1 2444445556677888999999999
Q ss_pred EEEeecCCCCeEEecC-----CcEEecCeEEEecCCCCCcCCCCCCCC--cEEEecCHHHHHhhhcccCCCCeEEEEcCC
Q psy2951 1142 IISDSELNEKKIKLQD-----GTSIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSS 1214 (1466)
Q Consensus 1142 v~~i~d~~~~~v~~~~-----g~~~~yd~lvlAtG~~~~~~~~~~g~~--~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g 1214 (1466)
|..+ +...++|.+.+ +.++.||+||+|||++|+.|++| |.+ +++++++++++..+++....+++++|||+|
T Consensus 81 v~~i-~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs~p~~p~i~-g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG 158 (452)
T 2cdu_A 81 VTNV-DPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPPIP-GIDSSRVYLCKNYNDAKKLFEEAPKAKTITIIGSG 158 (452)
T ss_dssp EEEE-EGGGTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCT-TTTSTTEEECSSHHHHHHHHHHGGGCSEEEEECCS
T ss_pred EEEE-EcCCCEEEEEecCCCceEEEECCEEEEccCCCcCCCCCC-CCCCCCEEEeCcHHHHHHHHHHhccCCeEEEECcC
Confidence 9999 98888888864 56799999999999999999998 876 799999999998888777789999999999
Q ss_pred HHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeec
Q psy2951 1215 FIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPA 1294 (1466)
Q Consensus 1215 ~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~ 1294 (1466)
++|+|+|..|++.|.+|+++++.++++++.+++++.+.+.+.++++||+++++++|++++ .+++++..+.+ +|+++++
T Consensus 159 ~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~-~~~~~v~~v~~-~g~~i~~ 236 (452)
T 2cdu_A 159 YIGAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFE-EVDDEIITKTL-DGKEIKS 236 (452)
T ss_dssp HHHHHHHHHHHTTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEESSCEEEEE-EETTEEEEEET-TSCEEEE
T ss_pred HHHHHHHHHHHhcCCEEEEEEcCCchhhhhhhhhHHHHHHHHHHHCCCEEEcCCeeEEEE-cCCCeEEEEEe-CCCEEEC
Confidence 999999999999999999999999998878899999999999999999999999999998 43555655666 7889999
Q ss_pred CEEEEeeccccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHh
Q psy2951 1295 DLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNM 1374 (1466)
Q Consensus 1295 D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i 1374 (1466)
|.||+|+|..|++++++.. +.++.+|+|.||+++||+.|+|||+|||+..+... .|.+.+..+|+.|..||+.||+||
T Consensus 237 D~vv~a~G~~p~~~ll~~~-l~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~-~g~~~~~~~~~~A~~~g~~aa~~i 314 (452)
T 2cdu_A 237 DIAILCIGFRPNTELLKGK-VAMLDNGAIITDEYMHSSNRDIFAAGDSAAVHYNP-TNSNAYIPLATNAVRQGRLVGLNL 314 (452)
T ss_dssp SEEEECCCEEECCGGGTTT-SCBCTTSCBCCCTTSBCSSTTEEECSTTBCEEETT-TTEEECCCCHHHHHHHHHHHHHTS
T ss_pred CEEEECcCCCCCHHHHHHh-hhcCCCCCEEECCCcCcCCCCEEEcceEEEecccc-CCCeeecchHHHHHHHHHHHHHHh
Confidence 9999999999999998877 88888899999999999999999999999987654 466677889999999999999999
Q ss_pred cCCCCCCC-CCccceeccccccEEEEeeCC-----CCceEEE-------cCC--c-CCceEEEEEEe--CCEEEEEEEec
Q psy2951 1375 VEKKTSLS-TIPFFWTMLFGVGFRFAGYAA-----GHTQVDI-------VGD--L-EALKFTAYYSN--ADKVLAILTVG 1436 (1466)
Q Consensus 1375 ~g~~~~~~-~~p~~w~~~~~~~~~~~g~~~-----~~~~~~~-------~~~--~-~~~~~~~~~~~--~~~~~~~~~~~ 1436 (1466)
+|...++. ..|++|+.+|+..+..+|..+ ...++.+ +.. + +...|++.+++ +++++|+..+|
T Consensus 315 ~g~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g 394 (452)
T 2cdu_A 315 TEDKVKDMGTQSSSGLKLYGRTYVSTGINTALAKANNLKVSEVIIADNYRPEFMLSTDEVLMSLVYDPKTRVILGGALSS 394 (452)
T ss_dssp SSCCCCCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCCEEEEEEEESSCTTBSCCCEEEEEEEECTTTCBEEEEEEEE
T ss_pred CCCCCcCCCccceEEEEECCeeeEeecCCHHHHHHcCCceEEEEEecCCccccCCCCceEEEEEEEECCCCEEEEEEEEc
Confidence 99765554 468899999999999999853 1111211 111 1 13457777774 58999999999
Q ss_pred C-c--HHHHHHHHHHHcCCCCChhcc
Q psy2951 1437 M-D--PLAAQFAERIKMQKYIQKDQI 1459 (1466)
Q Consensus 1437 ~-~--~~~~~~~~~~~~~~~~~~~~~ 1459 (1466)
. . ..+..+..+|+.+. +.++|
T Consensus 395 ~~~~~~~i~~~~~ai~~~~--~~~~l 418 (452)
T 2cdu_A 395 MHDVSQSANVLSVCIQNKN--TIDDL 418 (452)
T ss_dssp SSCCHHHHHHHHHHHHTTC--BHHHH
T ss_pred CccHHHHHHHHHHHHHcCC--CHHHH
Confidence 8 2 23355677888774 44444
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-41 Score=399.87 Aligned_cols=355 Identities=19% Similarity=0.271 Sum_probs=300.5
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhc--cCcccccccC-hhhhccCCcEEEcCCeE
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD--IKADSILLRT-EEFYKDNDIHVIKGKKI 1142 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~--~~~~~~~~~~-~~~~~~~~v~~~~~~~v 1142 (1466)
+++|||||||+||++||..|++.|+..+|+|||+++..+|.++.++..+. .....+.... ..++++.+++++.+++|
T Consensus 4 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 83 (384)
T 2v3a_A 4 RAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKPMLSTGFSKNKDADGLAMAEPGAMAEQLNARILTHTRV 83 (384)
T ss_dssp CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSCCCEECGGGGGGTTTTTCCHHHHEEECHHHHHHHTTCEEECSCCC
T ss_pred CCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCCCCccCcccccHHHhCCCCHHHhhccCHHHHHHhCCcEEEeCCEE
Confidence 47899999999999999999999987789999999988888887776654 2223333322 34567789999999989
Q ss_pred EEeecCCCCeEEecCCcEEecCeEEEecCCCCCcCCCCCCCC--cEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHH
Q psy2951 1143 ISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEA 1220 (1466)
Q Consensus 1143 ~~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~--~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~ 1220 (1466)
..+ ++..++|.+++ .++.||+||+|||++|+.|++| |.+ ++++.+++.++.++++.+..+++++|||+|++|+|+
T Consensus 84 ~~i-~~~~~~v~~~~-~~~~~d~lviAtG~~p~~p~i~-g~~~~~v~~~~~~~~~~~~~~~~~~~~~v~ViGgG~~g~e~ 160 (384)
T 2v3a_A 84 TGI-DPGHQRIWIGE-EEVRYRDLVLAWGAEPIRVPVE-GDAQDALYPINDLEDYARFRQAAAGKRRVLLLGAGLIGCEF 160 (384)
T ss_dssp CEE-EGGGTEEEETT-EEEECSEEEECCCEEECCCCCB-STTTTCEEECSSHHHHHHHHHHHTTCCEEEEECCSHHHHHH
T ss_pred EEE-ECCCCEEEECC-cEEECCEEEEeCCCCcCCCCCC-CcCcCCEEEECCHHHHHHHHHhhccCCeEEEECCCHHHHHH
Confidence 999 98888999865 4799999999999999999998 875 799999999998888888789999999999999999
Q ss_pred HHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEe
Q psy2951 1221 AAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVG 1300 (1466)
Q Consensus 1221 a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a 1300 (1466)
|..|++.|.+|+++++.+.++.+.+++++.+.+.+.+++.||+++++++|++++ .++ ....|.+.+|+++++|.||+|
T Consensus 161 A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~-~~~-~~~~v~~~~g~~i~~d~vv~a 238 (384)
T 2v3a_A 161 ANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLK-KAG-EGLEAHLSDGEVIPCDLVVSA 238 (384)
T ss_dssp HHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHTTTCEEEESCCEEEEE-EET-TEEEEEETTSCEEEESEEEEC
T ss_pred HHHHHhCCCeEEEEecCcchhhcccCHHHHHHHHHHHHHcCCEEEeCCEEEEEE-ecC-CEEEEEECCCCEEECCEEEEC
Confidence 999999999999999999888877789999999999999999999999999998 333 345688899999999999999
Q ss_pred eccccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCCCCC
Q psy2951 1301 IGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS 1380 (1466)
Q Consensus 1301 ~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~~~ 1380 (1466)
+|..|++++++.+|+.++ +| |.||++++|+.|+|||+|||+..+... ..+|..|..||++||+||+|...+
T Consensus 239 ~G~~p~~~l~~~~g~~~~-~g-i~vd~~~~t~~~~IyA~GD~~~~~~~~-------~~~~~~a~~~g~~~a~~i~g~~~~ 309 (384)
T 2v3a_A 239 VGLRPRTELAFAAGLAVN-RG-IVVDRSLRTSHANIYALGDCAEVDGLN-------LLYVMPLMACARALAQTLAGNPSQ 309 (384)
T ss_dssp SCEEECCHHHHHTTCCBS-SS-EEECTTCBCSSTTEEECGGGEEETTBC-------CCSHHHHHHHHHHHHHHHTTCCCC
T ss_pred cCCCcCHHHHHHCCCCCC-CC-EEECCCCCCCCCCEEEeeeeeeECCCC-------cchHHHHHHHHHHHHHHhcCCCcc
Confidence 999999999999999987 56 999999999999999999999764321 357899999999999999997665
Q ss_pred CC--CCccc-eeccccccEEEEeeCCCC-ceEEEcCCcCCceEEEEEEe-CCEEEEEEEecCc
Q psy2951 1381 LS--TIPFF-WTMLFGVGFRFAGYAAGH-TQVDIVGDLEALKFTAYYSN-ADKVLAILTVGMD 1438 (1466)
Q Consensus 1381 ~~--~~p~~-w~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 1438 (1466)
++ .+||+ |+ ++.+++++|..... ....+.++ +..|.+++++ +|+++|+.++|..
T Consensus 310 ~~~~~~p~~~~~--~~~~~~~~g~~~~~~~~~~~~~~--~~g~~~~~~~~~~~i~G~~~~g~~ 368 (384)
T 2v3a_A 310 VAYGPMPVTVKT--PACPLVVSPPPRGMDGQWLVEGS--GTDLKVLCRDTAGRVIGYALTGAA 368 (384)
T ss_dssp CCCCCCCEEECC--TTSCEEEECCCTTCCCEEEEEEE--TTEEEEEEECTTSCEEEEEEEGGG
T ss_pred CCCCCcceEEEE--CCeeEEEecCCCCCCceEEEEec--CCcEEEEEEccCCEEEEEEEECcc
Confidence 54 67764 44 56789999986533 34555554 3458878775 8999999999985
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=407.36 Aligned_cols=387 Identities=20% Similarity=0.284 Sum_probs=309.0
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhc--cCcccccccChhhh-ccCCcEEEcCCeE
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD--IKADSILLRTEEFY-KDNDIHVIKGKKI 1142 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~-~~~~v~~~~~~~v 1142 (1466)
+++|||||||+||+++|..|++.+...+|+|||++++.+|.+..++..+. ...+.+.....+++ ++.+++++.+++|
T Consensus 3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~v 82 (449)
T 3kd9_A 3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGIPYVVEGLSTPDKLMYYPPEVFIKKRGIDLHLNAEV 82 (449)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC------------------------CTHHHHTTCEEETTCEE
T ss_pred cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcCCccccCCCCCHHHhhhcCHHHHHHhcCcEEEecCEE
Confidence 46899999999999999999998555599999999987776554443332 23333333344445 6789999999999
Q ss_pred EEeecCCCCeEEecCC-cEEecCeEEEecCCCCCcCCCCCCCC--cEEEecCHHHHHhhhcccC--CCCeEEEEcCCHHH
Q psy2951 1143 ISDSELNEKKIKLQDG-TSIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHIT--PESNVVVIGSSFIG 1217 (1466)
Q Consensus 1143 ~~i~d~~~~~v~~~~g-~~~~yd~lvlAtG~~~~~~~~~~g~~--~v~~~~~~~~~~~l~~~~~--~~~~vvVvG~g~~g 1217 (1466)
+.+ +...+.|.++++ .++.||+||+|||++|+.|++| |.+ ++++.++.+++..+.+.+. .+++++|||+|++|
T Consensus 83 ~~i-~~~~~~v~~~~g~~~~~~d~lviAtG~~p~~p~i~-G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g 160 (449)
T 3kd9_A 83 IEV-DTGYVRVRENGGEKSYEWDYLVFANGASPQVPAIE-GVNLKGVFTADLPPDALAIREYMEKYKVENVVIIGGGYIG 160 (449)
T ss_dssp EEE-CSSEEEEECSSSEEEEECSEEEECCCEEECCCSCB-TTTSTTEECSCSTHHHHHHHHHHSSSCCCEEEEECCSHHH
T ss_pred EEE-ecCCCEEEECCceEEEEcCEEEECCCCCCCCCCCC-CCCCCCEEEeCCHHHHHHHHHHHHhcCCCeEEEECCCHHH
Confidence 999 998888988877 4899999999999999999999 876 7898889999988887776 68999999999999
Q ss_pred HHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEE
Q psy2951 1218 MEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLV 1297 (1466)
Q Consensus 1218 ~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~v 1297 (1466)
+|+|..|++.|.+|+++++.++++.+.+++++.+.+.+.++++ |++++++.+.+++ .++ ++..+ +.+|+++++|.|
T Consensus 161 ~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~-v~i~~~~~v~~i~-~~~-~v~~v-~~~g~~i~~D~V 236 (449)
T 3kd9_A 161 IEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEKLKKH-VNLRLQEITMKIE-GEE-RVEKV-VTDAGEYKAELV 236 (449)
T ss_dssp HHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHTTT-SEEEESCCEEEEE-CSS-SCCEE-EETTEEEECSEE
T ss_pred HHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhC-cEEEeCCeEEEEe-ccC-cEEEE-EeCCCEEECCEE
Confidence 9999999999999999999999998778999999999999999 9999999999998 333 44334 457789999999
Q ss_pred EEeeccccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCC
Q psy2951 1298 IVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEK 1377 (1466)
Q Consensus 1298 v~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~ 1377 (1466)
|+|+|..|++++++..|+.++.+|+|.||++++|+.|+|||+|||+..+... .|.+.+...|+.|..||++||+||+|.
T Consensus 237 v~a~G~~p~~~l~~~~gl~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~~~-~g~~~~~~l~~~A~~~g~~aa~~i~g~ 315 (449)
T 3kd9_A 237 ILATGIKPNIELAKQLGVRIGETGAIWTNEKMQTSVENVYAAGDVAETRHVI-TGRRVWVPLAPAGNKMGYVAGSNIAGK 315 (449)
T ss_dssp EECSCEEECCHHHHHTTCCBCTTSSBCCCTTCBCSSTTEEECSTTBCEEBTT-TCSEECCCCHHHHHHHHHHHHHHHTTC
T ss_pred EEeeCCccCHHHHHhCCccCCCCCCEEECCCCccCCCCEEEeeeeeeecccc-CCceEEeccHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999998899999999999999999999999987764 467777889999999999999999998
Q ss_pred CCCCCC-CccceeccccccEEEEeeCC------CCceEEE--c--C----C-cCCceEEEEEEeC--CEEEEEEEecCc-
Q psy2951 1378 KTSLST-IPFFWTMLFGVGFRFAGYAA------GHTQVDI--V--G----D-LEALKFTAYYSNA--DKVLAILTVGMD- 1438 (1466)
Q Consensus 1378 ~~~~~~-~p~~w~~~~~~~~~~~g~~~------~~~~~~~--~--~----~-~~~~~~~~~~~~~--~~~~~~~~~~~~- 1438 (1466)
..++.. .|++|+.+++..+..+|+.+ +.+-.+. . + . -++..|++..++. ++|+|+..+|..
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a 395 (449)
T 3kd9_A 316 ELHFPGVLGTAVTKFMDVEIGKTGLTEMEALKEGYDVRTAFIKASTRPHYYPGGREIWLKGVVDNETNRLLGVQVVGSDI 395 (449)
T ss_dssp CCCCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCEEEEEEEEESSCTTSTTCCEEEEEEEEETTTCBEEEEEEEESSC
T ss_pred CccCCCcccceEEEEcCcEEEEecCCHHHHHHCCCceEEEEEecCCccccCCCCceEEEEEEEECCCCEEEEEEEEChHH
Confidence 776654 58889999999999999863 2221111 1 1 0 1245688887763 899999999986
Q ss_pred -HHHHHHHHHHHcCCCCChhcccc
Q psy2951 1439 -PLAAQFAERIKMQKYIQKDQIEN 1461 (1466)
Q Consensus 1439 -~~~~~~~~~~~~~~~~~~~~~~~ 1461 (1466)
..+..+.-+|+.+ ++.++|++
T Consensus 396 ~e~i~~~~~ai~~~--~t~~~l~~ 417 (449)
T 3kd9_A 396 LPRIDTAAAMLMAG--FTTKDAFF 417 (449)
T ss_dssp HHHHHHHHHHHHTT--CBHHHHHT
T ss_pred HHHHHHHHHHHHcC--CcHHHHhh
Confidence 4455566677776 45555543
|
| >4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-41 Score=404.65 Aligned_cols=361 Identities=19% Similarity=0.321 Sum_probs=296.3
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcc---cCcc-cccccCHhHhhhCCcEEEEceEE
Q psy2951 596 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD---IKAD-SILLRTEEFYKDNDIHVIKGKKI 671 (1466)
Q Consensus 596 ~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~gv~~~~~~~v 671 (1466)
+|||||||||||++||..|+++|++..|+++|++++.+|..+.++..+. .+.. .+.....+++++.+++++.+++|
T Consensus 1 PKVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V 80 (437)
T 4eqs_A 1 PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYVIGEVVEDRRYALAYTPEKFYDRKQITVKTYHEV 80 (437)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGGGHHHHHTTSSCCGGGTBCCCHHHHHHHHCCEEEETEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcchhHHHHcCCccchhhhhhcCHHHHHHhcCCEEEeCCeE
Confidence 4799999999999999999999998889999999988888777665443 1122 22333345677889999999999
Q ss_pred EEeccccccEEEccC-----CCEEecCEEEEcCCCCCCcCCCCCCCCcEEEecCHHHHHhhcccC--CCCCcEEEECCCh
Q psy2951 672 ISDSELNEKKIKLQD-----GTSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHI--TPESNVVVIGSSF 744 (1466)
Q Consensus 672 ~~i~~~~~~~v~~~~-----~~~~~~d~lviAtG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~vvVvG~G~ 744 (1466)
+.+ |...+.+.+.. +.++.||+||||||++|+.|+++ |. +++.+++++++..+.+.+ .++++++|||+|+
T Consensus 81 ~~i-d~~~~~~~~~~~~~~~~~~~~yd~lVIATGs~p~~p~i~-g~-~~~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~ 157 (437)
T 4eqs_A 81 IAI-NDERQTVSVLNRKTNEQFEESYDKLILSPGASANSLGFE-SD-ITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGY 157 (437)
T ss_dssp EEE-ETTTTEEEEEETTTTEEEEEECSEEEECCCEEECCCCCC-CT-TEECCSSHHHHHHHHHHHHHHTCCEEEEECCSH
T ss_pred EEE-EccCcEEEEEeccCCceEEEEcCEEEECCCCcccccccc-Cc-eEEeeccHHHHHHHHHhhhccCCcEEEEECCcc
Confidence 999 88877776543 23689999999999999999888 74 577888998888776543 2478999999999
Q ss_pred HHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecC
Q psy2951 745 IGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPAD 824 (1466)
Q Consensus 745 ~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D 824 (1466)
+|+|+|..++++|.+||++++.++++ +.+++++.+.+.+.++++||++++++++++++.. .+.+++|+++++|
T Consensus 158 ig~E~A~~l~~~g~~Vtlv~~~~~ll-~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~~~~~------~v~~~~g~~~~~D 230 (437)
T 4eqs_A 158 VSLEVLENLYERGLHPTLIHRSDKIN-KLMDADMNQPILDELDKREIPYRLNEEINAINGN------EITFKSGKVEHYD 230 (437)
T ss_dssp HHHHHHHHHHHHTCEEEEEESSSCCS-TTSCGGGGHHHHHHHHHTTCCEEESCCEEEEETT------EEEETTSCEEECS
T ss_pred chhhhHHHHHhcCCcceeeeeecccc-ccccchhHHHHHHHhhccceEEEeccEEEEecCC------eeeecCCeEEeee
Confidence 99999999999999999999999876 5788999999999999999999999999999832 5778999999999
Q ss_pred EEEEccccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhc
Q psy2951 825 LVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMV 904 (1466)
Q Consensus 825 ~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~ 904 (1466)
.|++|+|++||+++++..|++++++|+|.||+++||++|+|||+|||+..+... ++.+..+++++.|.+||+++|+||+
T Consensus 231 ~vl~a~G~~Pn~~~~~~~gl~~~~~G~I~vd~~~~Ts~p~IyA~GDva~~~~~~-~~~~~~~~~a~~A~~~g~~~a~ni~ 309 (437)
T 4eqs_A 231 MIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRH-VDLPASVPLAWGAHRAASIVAEQIA 309 (437)
T ss_dssp EEEECCCEEESCGGGTTSSCCCCTTSCEECCTTCBCSSTTEEECGGGEEEEBSS-SSSEECCCSHHHHHHHHHHHHHHHH
T ss_pred eEEEEeceecCcHHHHhhhhhhccCCcEecCCCccCCCCCEEEEEEccCccccc-CCccccchhHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999988765 5677788899999999999999999
Q ss_pred cCCC-cCc-ccCeeeeeecCceeEEeeccCCCCce----e--E-ec------ccccceEEEEEe--cCCeEEEEEeecCc
Q psy2951 905 EKKT-SLS-TIPFFWTMLFGVGFRFAGYAAGHTQV----D--I-VG------DLEALKFTAYYS--NADKVLAILTVGMD 967 (1466)
Q Consensus 905 ~~~~-~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~----~--~-~~------~~~~~~~~~~~~--~~~~i~g~~~~g~~ 967 (1466)
|... .+. .++..+..+++..+..+|+++...+. . . .. .-++..|+|+++ ++++++|++++|.+
T Consensus 310 g~~~~~~~~~~~~~~~~~~~p~ia~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilGa~~~g~~ 389 (437)
T 4eqs_A 310 GNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQFDYKMVEVTQGAHANYYPGNSPLHLRVYYDTSNRQILRAAAVGKE 389 (437)
T ss_dssp SCTTCCCCCBCCCEEEEETTEEEEEEESCGGGGGGSCEEEEEEEEESSCTTSSSCCEEEEEEEEETTTCBEEEEEEEESS
T ss_pred CCCCcccccceeEEeeeeccceEEEeeCCHHHHHhCCceEEEEecCCchhhcCCCCcEEEEEEEECCCCEEEEEEEECcC
Confidence 8754 232 33333444677778888887532111 0 0 00 012456889888 56899999999975
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-40 Score=404.19 Aligned_cols=385 Identities=20% Similarity=0.231 Sum_probs=309.8
Q ss_pred CcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhc---cCcccccccChhhhccCCcEEEcCCeEE
Q psy2951 1067 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD---IKADSILLRTEEFYKDNDIHVIKGKKII 1143 (1466)
Q Consensus 1067 ~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 1143 (1466)
++|||||||+||++||..|++.+...+|+|||++++.+|.+..+..... ...+.+.....+++.+.+++++.+++|+
T Consensus 3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~V~ 82 (452)
T 3oc4_A 3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARYITEEELRRQKIQLLLNREVV 82 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC----------------CCCCHHHHHHTTEEEECSCEEE
T ss_pred CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhhhcCCCCCHHHhhcCCHHHHHHCCCEEEECCEEE
Confidence 5899999999999999999998444499999999999988776655443 2334555556678888999999999999
Q ss_pred EeecCCCCeEEec---CCcEEecCeEEEecCCCCCcCCCCCCCC--cEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHH
Q psy2951 1144 SDSELNEKKIKLQ---DGTSIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGM 1218 (1466)
Q Consensus 1144 ~i~d~~~~~v~~~---~g~~~~yd~lvlAtG~~~~~~~~~~g~~--~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~ 1218 (1466)
.+ |+..+.+.+. ++.++.||+||+|||++|+.|++| |.+ ++++.++.+++..+++....+++++|||+|++|+
T Consensus 83 ~i-d~~~~~v~v~~~~~~~~~~~d~lviAtG~~p~~p~i~-g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~ 160 (452)
T 3oc4_A 83 AM-DVENQLIAWTRKEEQQWYSYDKLILATGASQFSTQIR-GSQTEKLLKYKFLSGALAAVPLLENSQTVAVIGAGPIGM 160 (452)
T ss_dssp EE-ETTTTEEEEEETTEEEEEECSEEEECCCCCBCCCCCB-TTTCTTEEEGGGCC----CCHHHHTCSEEEEECCSHHHH
T ss_pred EE-ECCCCEEEEEecCceEEEEcCEEEECCCcccCCCCCC-CCCCCCEEEeCCHHHHHHHHHHHhcCCEEEEECCCHHHH
Confidence 99 9999988773 566899999999999999999999 887 7899888888877777667789999999999999
Q ss_pred HHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEE
Q psy2951 1219 EAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVI 1298 (1466)
Q Consensus 1219 e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv 1298 (1466)
|+|..+++.|.+|+++++.++++++.+++++.+.+.+.++++||+++++++|++++ .+++++ .|.+++| ++++|.||
T Consensus 161 E~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~-~~~~~v-~v~~~~g-~i~aD~Vv 237 (452)
T 3oc4_A 161 EAIDFLVKMKKTVHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIE-ETANGI-VLETSEQ-EISCDSGI 237 (452)
T ss_dssp HHHHHHHHTTCEEEEEESSSSSSTTTCCHHHHHHHHHHHHTTTEEEEETCCEEEEE-ECSSCE-EEEESSC-EEEESEEE
T ss_pred HHHHHHHhCCCeEEEEEccCccccccCCHHHHHHHHHHHHHcCCEEEeCCEEEEEE-ccCCeE-EEEECCC-EEEeCEEE
Confidence 99999999999999999999999877899999999999999999999999999998 444555 6788777 89999999
Q ss_pred EeeccccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCCC
Q psy2951 1299 VGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK 1378 (1466)
Q Consensus 1299 ~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~ 1378 (1466)
+|+|..|++++++.. +.++.+|+|.||+++||+.|+|||+|||+..+... .|.+.+...|+.|..||+.||.||+|..
T Consensus 238 ~A~G~~p~~~~l~~~-~~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~-~~~~~~~~~~~~A~~~g~~aa~~i~g~~ 315 (452)
T 3oc4_A 238 FALNLHPQLAYLDKK-IQRNLDQTIAVDAYLQTSVPNVFAIGDCISVMNEP-VAETFYAPLVNNAVRTGLVVANNLEEKT 315 (452)
T ss_dssp ECSCCBCCCSSCCTT-SCBCTTSCBCCCTTCBCSSTTEEECGGGBCEEEGG-GTEEECCCCHHHHHHHHHHHTTSSSSCC
T ss_pred ECcCCCCChHHHHhh-hccCCCCCEEECcCccCCCCCEEEEEeeEEecccc-CCceeecchHHHHHHHHHHHHHHhcCCC
Confidence 999999999988765 88888899999999999999999999999887654 3566677889999999999999999987
Q ss_pred CCCC-CCccceeccccccEEEEeeCC------CCceEEEc------CCc-CCceEEEEEEe--CCEEEEEEEecCc---H
Q psy2951 1379 TSLS-TIPFFWTMLFGVGFRFAGYAA------GHTQVDIV------GDL-EALKFTAYYSN--ADKVLAILTVGMD---P 1439 (1466)
Q Consensus 1379 ~~~~-~~p~~w~~~~~~~~~~~g~~~------~~~~~~~~------~~~-~~~~~~~~~~~--~~~~~~~~~~~~~---~ 1439 (1466)
.++. ..+.+|+.+|+..+..+|+.+ +.+-.+.. .-+ ++..|++..++ +++++|+..+|.. .
T Consensus 316 ~~~~~~~~~~~~~~~~~~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~~a~e 395 (452)
T 3oc4_A 316 HRFIGSLRTMGTKVGDYYLASTGLTETEGLFFPQTLASIIVRQPAPPLQHGTEILGKLIYDKVTQRVLGAQLCSKNNCLE 395 (452)
T ss_dssp CCCCCCCCCEEEEETTEEEEEEECCSGGGGGSSSCEEEEEEEEECTTTTCSCEEEEEEEEETTTCBEEEEEEEESSCCTH
T ss_pred ccCCCccccEEEEEcCeeEEEecCCHHHHHHCCCceEEEEEecCCccCCCCCeEEEEEEEECCCCEEEEEEEEeCCCHHH
Confidence 6664 455678899998888889864 11111111 000 24568888776 3899999999973 5
Q ss_pred HHHHHHHHHHcCCCCChhccc
Q psy2951 1440 LAAQFAERIKMQKYIQKDQIE 1460 (1466)
Q Consensus 1440 ~~~~~~~~~~~~~~~~~~~~~ 1460 (1466)
.+..+.-+|+.+ ++.++|+
T Consensus 396 ~i~~~~~ai~~~--~t~~~l~ 414 (452)
T 3oc4_A 396 KINTLALSIQTG--QTLTDLL 414 (452)
T ss_dssp HHHHHHHHHHTT--CBHHHHH
T ss_pred HHHHHHHHHHcC--CCHHHHH
Confidence 566777788877 4555553
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-40 Score=404.77 Aligned_cols=387 Identities=20% Similarity=0.309 Sum_probs=315.2
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhc---cCcccccccChhhh-ccCCcEEEcCCe
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD---IKADSILLRTEEFY-KDNDIHVIKGKK 1141 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~-~~~~v~~~~~~~ 1141 (1466)
+++|||||||+||++||..|++.+...+|+|||+++..+|.++.++.... ...+.+..+..+++ +..+++++.+++
T Consensus 36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gv~~~~~~~ 115 (480)
T 3cgb_A 36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYVISGAIASTEKLIARNVKTFRDKYGIDAKVRHE 115 (480)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGGHHHHHTTSSSCGGGGBSSCHHHHHHTTCCEEESSEE
T ss_pred cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCCcchhhcCCcCCHHHhhhcCHHHHHhhcCCEEEeCCE
Confidence 46899999999999999999997434499999999988887665544332 12344444445555 445999999999
Q ss_pred EEEeecCCCCeEEecC---Cc--EEecCeEEEecCCCCCcCCCCCCCC--cEEEecCHHHHHhhhcccC--CCCeEEEEc
Q psy2951 1142 IISDSELNEKKIKLQD---GT--SIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHIT--PESNVVVIG 1212 (1466)
Q Consensus 1142 v~~i~d~~~~~v~~~~---g~--~~~yd~lvlAtG~~~~~~~~~~g~~--~v~~~~~~~~~~~l~~~~~--~~~~vvVvG 1212 (1466)
|..+ +...+.|.+.+ |+ ++.||+||+|||++|+.|++| |.+ +++++++.+++.++++.+. .+++|+|||
T Consensus 116 v~~i-~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~i~-G~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvViG 193 (480)
T 3cgb_A 116 VTKV-DTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMPEWE-GRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIG 193 (480)
T ss_dssp EEEE-ETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCB-TTTSBTEECCSSHHHHHHHHHHHHSSCCCEEEEEC
T ss_pred EEEE-ECCCCEEEEEEcCCCceEEEEcCEEEECCCCcccCCCCC-CccCCCEEEeCCHHHHHHHHHHhhhcCCCeEEEEC
Confidence 9999 99888888764 66 799999999999999999999 876 7898999999988877664 689999999
Q ss_pred CCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCee
Q psy2951 1213 SSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTI 1292 (1466)
Q Consensus 1213 ~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i 1292 (1466)
+|++|+|+|..|++.|.+|+++++.+.++. .+++++.+.+.+.+++.||+++++++|++++ .+ +++..+.++ +.++
T Consensus 194 gG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~-~~-~~v~~v~~~-~~~i 269 (480)
T 3cgb_A 194 GGAIGLEMAETFVELGKKVRMIERNDHIGT-IYDGDMAEYIYKEADKHHIEILTNENVKAFK-GN-ERVEAVETD-KGTY 269 (480)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEECCGGGTTS-SSCHHHHHHHHHHHHHTTCEEECSCCEEEEE-ES-SBEEEEEET-TEEE
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEeCCchhh-cCCHHHHHHHHHHHHHcCcEEEcCCEEEEEE-cC-CcEEEEEEC-CCEE
Confidence 999999999999999999999999987776 6789999999999999999999999999998 33 456556665 4589
Q ss_pred ecCEEEEeeccccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHH
Q psy2951 1293 PADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAAL 1372 (1466)
Q Consensus 1293 ~~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~ 1372 (1466)
++|.||+|+|..|++++++..|+.++.+|+|.||++++|+.|+|||+|||+..+... .|.+.++.+|..|..||++||+
T Consensus 270 ~~D~vi~a~G~~p~~~~l~~~g~~~~~~G~I~Vd~~~~ts~p~IyA~GD~~~~~~~~-~g~~~~~~~~~~A~~qg~~aa~ 348 (480)
T 3cgb_A 270 KADLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQTNVQDVYAAGDCATHYHVI-KEIHDHIPIGTTANKQGRLAGL 348 (480)
T ss_dssp ECSEEEECSCEEESCGGGTTSCCCBCTTSCBCCCTTSBCSSTTEEECGGGBCEEBTT-TCSEECCCCHHHHHHHHHHHHH
T ss_pred EcCEEEECcCCCcChHHHHhCCcccCCCCCEEECCCccCCCCCEEEeeeEEEecCCC-CCcceecchHHHHHHHHHHHHH
Confidence 999999999999999999999999988899999999999999999999999887654 4666777899999999999999
Q ss_pred HhcCCCCCCCC-CccceeccccccEEEEeeCC------CCc--eEEEcCC------c-CCceEEEEEEe--CCEEEEEEE
Q psy2951 1373 NMVEKKTSLST-IPFFWTMLFGVGFRFAGYAA------GHT--QVDIVGD------L-EALKFTAYYSN--ADKVLAILT 1434 (1466)
Q Consensus 1373 ~i~g~~~~~~~-~p~~w~~~~~~~~~~~g~~~------~~~--~~~~~~~------~-~~~~~~~~~~~--~~~~~~~~~ 1434 (1466)
||+|...++.. .+++|+.+++..+..+|+.+ +.+ ...+... + +...|++++++ +++|+|+..
T Consensus 349 ~i~g~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~ 428 (480)
T 3cgb_A 349 NMLDKRRAFKGTLGTGIIKFMNLTLARTGLNEKEAKGLHIPYKTVKVDSTNMAGYYPNAKPLYLKLLYRSDTKQLLGGQV 428 (480)
T ss_dssp HHTTCCCCCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCEEEEEEEEESSCTTSTTCCEEEEEEEEETTTCBEEEEEE
T ss_pred HhcCCCccCCCccceeEEEECCcEEEEeCCCHHHHHHcCCceEEEEEecCCcccccCCCceEEEEEEEECCCCEEEEEEE
Confidence 99997666643 45789999999999999853 111 1222211 0 12347777764 799999999
Q ss_pred ecCc---HHHHHHHHHHHcCCCCChhcccc
Q psy2951 1435 VGMD---PLAAQFAERIKMQKYIQKDQIEN 1461 (1466)
Q Consensus 1435 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 1461 (1466)
+|.. ..+..+..+|+.+. +.++|.+
T Consensus 429 vg~~~a~e~i~~~~~ai~~~~--~~~~l~~ 456 (480)
T 3cgb_A 429 IGEEGVDKRIDVIAMALFNKM--SIHDLED 456 (480)
T ss_dssp EESSSHHHHHHHHHHHHHTTC--BGGGGGG
T ss_pred ECCccHHHHHHHHHHHHHcCC--CHHHHhh
Confidence 9997 35667788898885 4455544
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-40 Score=416.38 Aligned_cols=391 Identities=18% Similarity=0.270 Sum_probs=320.4
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhcc---CcccccccChhhhcc-CCcEEEcCCe
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDI---KADSILLRTEEFYKD-NDIHVIKGKK 1141 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~-~~v~~~~~~~ 1141 (1466)
|++|||||||+||++||..|++.+...+|+|||++++++|.++.++..+.. ....+..+..+++.+ .+++++++++
T Consensus 1 M~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 80 (565)
T 3ntd_A 1 MKKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCGLPYHISGEIAQRSALVLQTPESFKARFNVEVRVKHE 80 (565)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTSSSCCGGGGBCCCHHHHHHHHCCEEETTEE
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccccccCchHHhcCCcCChHHhhccCHHHHHHhcCcEEEECCE
Confidence 468999999999999999999996556999999999999988776655431 233344455555544 7999999999
Q ss_pred EEEeecCCCCeEEecC---Cc--EEecCeEEEecCCCCCcCCCCCCCC--cEEEecCHHHHHhhhccc--CCCCeEEEEc
Q psy2951 1142 IISDSELNEKKIKLQD---GT--SIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHI--TPESNVVVIG 1212 (1466)
Q Consensus 1142 v~~i~d~~~~~v~~~~---g~--~~~yd~lvlAtG~~~~~~~~~~g~~--~v~~~~~~~~~~~l~~~~--~~~~~vvVvG 1212 (1466)
|+.+ |+..+.+.+.+ +. ++.||+||||||++|+.|++| |.+ +++++++..++..+++.+ ..+++|+|||
T Consensus 81 V~~i-d~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~ip-G~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvViG 158 (565)
T 3ntd_A 81 VVAI-DRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPPIP-GVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVG 158 (565)
T ss_dssp EEEE-ETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCT-TCCSTTEECCSSHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred EEEE-ECCCCEEEEEecCCCCeEEEECCEEEECCCCCCCCCCCC-CCCCCCEEEeCCHHHHHHHHHHHhhCCCCEEEEEC
Confidence 9999 99999888864 54 789999999999999999999 886 889999998888776543 3478999999
Q ss_pred CCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEec----------------
Q psy2951 1213 SSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKN---------------- 1276 (1466)
Q Consensus 1213 ~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~---------------- 1276 (1466)
+|++|+|+|..|++.|.+|+++++.+.+++ .+++++.+.+.+.++++||++++++++++++..
T Consensus 159 gG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~ 237 (565)
T 3ntd_A 159 GGFIGLEMMESLHHLGIKTTLLELADQVMT-PVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAH 237 (565)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEEESSSSSCT-TSCHHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTT
T ss_pred CCHHHHHHHHHHHhcCCcEEEEEcCCccch-hcCHHHHHHHHHHHHHCCCEEEeCCeEEEEecccccccccccccccccc
Confidence 999999999999999999999999998887 788999999999999999999999999999831
Q ss_pred --CCCcEEEEEcCCCCeeecCEEEEeeccccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCce
Q psy2951 1277 --EKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKN 1354 (1466)
Q Consensus 1277 --~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~ 1354 (1466)
.++ ...+.+.+|+++++|.||+|+|..|++++++..|+.++.+|+|.||++++|+.|+|||+|||+..+... .|.+
T Consensus 238 ~~~~~-~~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~g~~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~-~g~~ 315 (565)
T 3ntd_A 238 QHIKG-HLSLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQTSDPAIYAVGDAVEEQDFV-TGQA 315 (565)
T ss_dssp CCTTC-EEEEEETTSCEEEESEEEECSCEEECCHHHHHHTCCBCTTSSBCCCTTCBCSSTTEEECGGGBCEEBTT-TCCE
T ss_pred ccCCC-cEEEEEcCCCEEEcCEEEECcCCccchHHHHhCCcccCCCCCEEECCCcccCCCCEEEeeeeEeecccc-CCce
Confidence 233 345778899999999999999999999999888999998899999999999999999999999988765 4677
Q ss_pred eeeecHHHHHHHHHHHHHHhcCCCCCCCCCc-cceeccccccEEEEeeCC------CCc--eEEEcC------C-cCCce
Q psy2951 1355 ASIGHYQLAQYHGRIAALNMVEKKTSLSTIP-FFWTMLFGVGFRFAGYAA------GHT--QVDIVG------D-LEALK 1418 (1466)
Q Consensus 1355 ~~~~~~~~A~~qa~~aa~~i~g~~~~~~~~p-~~w~~~~~~~~~~~g~~~------~~~--~~~~~~------~-~~~~~ 1418 (1466)
.+..+|+.|..||++||+||+|...+|...| ++|+.+|+..+..+|+.+ +.+ ...... . -++..
T Consensus 316 ~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~ 395 (565)
T 3ntd_A 316 CLVPLAGPANRQGRMAADNMFGREERYQGTQGTAICKVFDLAVGATGKNEKQLKQAGIAFEKVYVHTASHASYYPGAEVV 395 (565)
T ss_dssp ECCCCHHHHHHHHHHHHHHHTTCCCCCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCCEEEEEEEESSCTTSTTCCEE
T ss_pred eecccHHHHHHHHHHHHHHhcCCCccCCCcccceEEEEcCcEEEEecCCHHHHHHcCCCeEEEEEecCcccCcCCCCceE
Confidence 7788999999999999999999887787655 456889999999999863 222 122211 0 12345
Q ss_pred EEEEEE--eCCEEEEEEEecCcH---HHHHHHHHHHcCCCCChhcccccC
Q psy2951 1419 FTAYYS--NADKVLAILTVGMDP---LAAQFAERIKMQKYIQKDQIENNA 1463 (1466)
Q Consensus 1419 ~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 1463 (1466)
|++..+ ++++++|+..+|... .+..+.-+|+.+ ++.++|++..
T Consensus 396 ~~k~v~~~~~~~ilG~~~~g~~a~~e~i~~~~~ai~~~--~~~~~l~~~~ 443 (565)
T 3ntd_A 396 SFKLLFDPVKGTIFGAQAVGKDGIDKRIDVMAVAQRAG--MTVEQLQHLE 443 (565)
T ss_dssp EEEEEECTTTCBEEEEEEEESSSHHHHHHHHHHHHHTT--CBHHHHTTCC
T ss_pred EEEEEEECCCCEEEEEEEECCccHHHHHHHHHHHHHcC--CCHHHHhhhh
Confidence 888877 468999999999864 455566677776 5666665443
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-40 Score=401.53 Aligned_cols=384 Identities=22% Similarity=0.334 Sum_probs=312.4
Q ss_pred cEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhc---cCcccccccChhhhccCCcEEEcCCeEEE
Q psy2951 1068 TFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD---IKADSILLRTEEFYKDNDIHVIKGKKIIS 1144 (1466)
Q Consensus 1068 ~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 1144 (1466)
+|||||||+||++||..|++.+...+|+|||++++.+|....+..... ...+++.....+++.+.+++++.+++|..
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~ 81 (447)
T 1nhp_A 2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEITA 81 (447)
T ss_dssp EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEEE
T ss_pred eEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcccccchhhhcCccCCHHHhhcCCHHHHHHCCCEEEECCEEEE
Confidence 799999999999999999998433499999999988775543332221 13344445556777788999999999999
Q ss_pred eecCCCCeEEecC---Cc--EEecCeEEEecCCCCCcCCCCCCCC--cEEEecCHHHHHhhhcccC--CCCeEEEEcCCH
Q psy2951 1145 DSELNEKKIKLQD---GT--SIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHIT--PESNVVVIGSSF 1215 (1466)
Q Consensus 1145 i~d~~~~~v~~~~---g~--~~~yd~lvlAtG~~~~~~~~~~g~~--~v~~~~~~~~~~~l~~~~~--~~~~vvVvG~g~ 1215 (1466)
+ +...++|.+.+ |+ ++.||+||+|||++|+.|++| |.+ +++++++.+++.++++.+. .+++++|||+|+
T Consensus 82 i-~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~i~-G~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvIiG~G~ 159 (447)
T 1nhp_A 82 I-QPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDIP-GKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGY 159 (447)
T ss_dssp E-ETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCST-TTTSBSEECCCHHHHHHHHHHHHTCTTCCEEEEECCSH
T ss_pred E-eCCCCEEEEEecCCCceEEEeCCEEEEcCCCCcCCCCCC-CCCCCCeEEECCHHHHHHHHHHhhhcCCCeEEEECCCH
Confidence 9 99989888864 65 389999999999999999999 876 7888889999988887766 689999999999
Q ss_pred HHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecC
Q psy2951 1216 IGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPAD 1295 (1466)
Q Consensus 1216 ~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D 1295 (1466)
+|+|+|..|++.|.+|+++++.+.++.+.+++++.+.+.+.+++.||+++++++|++++ .+ +++..+.+ +|+++++|
T Consensus 160 ~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~-~~-~~v~~v~~-~~~~i~~d 236 (447)
T 1nhp_A 160 IGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYE-GD-GRVQKVVT-DKNAYDAD 236 (447)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEE-CS-SBCCEEEE-SSCEEECS
T ss_pred HHHHHHHHHHHCCCeEEEEecCcccccccCCHHHHHHHHHHHHhCCCEEEcCCEEEEEE-cc-CcEEEEEE-CCCEEECC
Confidence 99999999999999999999999888777899999999999999999999999999998 33 44444555 56789999
Q ss_pred EEEEeeccccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhc
Q psy2951 1296 LVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMV 1375 (1466)
Q Consensus 1296 ~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~ 1375 (1466)
.||+|+|..|++++++.. ++++.+|+|.||++++|+.|+|||+|||+..+... .|.+.+..+|+.|..||+.||.||+
T Consensus 237 ~vi~a~G~~p~~~~~~~~-~~~~~~G~i~Vd~~~~t~~~~Iya~GD~~~~~~~~-~g~~~~~~~~~~A~~qg~~aa~~i~ 314 (447)
T 1nhp_A 237 LVVVAVGVRPNTAWLKGT-LELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNP-ADTEVNIALATNARKQGRFAVKNLE 314 (447)
T ss_dssp EEEECSCEEESCGGGTTT-SCBCTTSCBCCCTTCBCSSTTEEECGGGSCEEEGG-GTEEECCCCHHHHHHHHHHHHHTSS
T ss_pred EEEECcCCCCChHHHHhh-hhhcCCCcEEECccccCCCCCEEEeeeEEEeeccC-CCCceechhHHHHHHHHHHHHHhhc
Confidence 999999999999998877 88887889999999999999999999999877654 3566677899999999999999999
Q ss_pred CCCCCCC-CCccceeccccccEEEEeeCC------CCc--eEEEcC----C---cCCceEEEEEEe--CCEEEEEEEecC
Q psy2951 1376 EKKTSLS-TIPFFWTMLFGVGFRFAGYAA------GHT--QVDIVG----D---LEALKFTAYYSN--ADKVLAILTVGM 1437 (1466)
Q Consensus 1376 g~~~~~~-~~p~~w~~~~~~~~~~~g~~~------~~~--~~~~~~----~---~~~~~~~~~~~~--~~~~~~~~~~~~ 1437 (1466)
|...++. ..|++|+.+++..+..+|+.+ +.+ ...... . -++..|++.+++ +++|+|+..+|.
T Consensus 315 g~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~ 394 (447)
T 1nhp_A 315 EPVKPFPGVQGSSGLAVFDYKFASTGINEVMAQKLGKETKAVTVVEDYLMDFNPDKQKAWFKLVYDPETTQILGAQLMSK 394 (447)
T ss_dssp SCCCCCCCBCCCEEEEETTEEEEEEECCHHHHHHHTCCCEEEEEEEESSCTTCTTCCEEEEEEEECTTTCBEEEEEEEES
T ss_pred CCCCCCCCccccEEEEECCeeeEEecCCHHHHHHcCCceEEEEEEcCCccccCCCCceEEEEEEEECCCCEEEEEEEEcC
Confidence 9765554 458899999999999999853 111 111111 0 023357777765 689999999998
Q ss_pred cH---HHHHHHHHHHcCCCCChhccc
Q psy2951 1438 DP---LAAQFAERIKMQKYIQKDQIE 1460 (1466)
Q Consensus 1438 ~~---~~~~~~~~~~~~~~~~~~~~~ 1460 (1466)
.. .+..+..+|+.+. +.++|.
T Consensus 395 ~~a~e~i~~~~~ai~~~~--~~~~l~ 418 (447)
T 1nhp_A 395 ADLTANINAISLAIQAKM--TIEDLA 418 (447)
T ss_dssp SCCTTHHHHHHHHHHTTC--BHHHHH
T ss_pred ccHHHHHHHHHHHHHcCC--CHHHHh
Confidence 62 4566777888874 444443
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-40 Score=391.83 Aligned_cols=346 Identities=21% Similarity=0.291 Sum_probs=286.1
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcc--cCcccccccCHhHhhhCCcEEEEceEEE
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD--IKADSILLRTEEFYKDNDIHVIKGKKII 672 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~gv~~~~~~~v~ 672 (1466)
..+|+||||||||++||..|+++| +|+++|++++.+|..+.+...+. .+.+++..+..+++++.+++++.+++|+
T Consensus 8 ~~~vvIIGgG~AGl~aA~~l~~~g---~V~lie~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~g~~v~ 84 (367)
T 1xhc_A 8 GSKVVIVGNGPGGFELAKQLSQTY---EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAK 84 (367)
T ss_dssp -CEEEEECCSHHHHHHHHHHTTTS---EEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEE
T ss_pred CCcEEEECCcHHHHHHHHHHhhcC---CEEEEECCCCCccccchhHHHHhCCCCHHHhccCCHHHHHhCCcEEEECCEEE
Confidence 579999999999999999999998 59999999887776665554432 4556677777888888999999998899
Q ss_pred EeccccccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHH
Q psy2951 673 SDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAF 752 (1466)
Q Consensus 673 ~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~ 752 (1466)
.+ +...+.|. .++.++.||+||||||++|+.|+++ |.++++++++.+++.++.+.+.++++++|||+|++|+|+|..
T Consensus 85 ~i-d~~~~~V~-~~g~~~~~d~lViATGs~p~~p~i~-G~~~v~~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~~ 161 (367)
T 1xhc_A 85 LI-DRGRKVVI-TEKGEVPYDTLVLATGARAREPQIK-GKEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGN 161 (367)
T ss_dssp EE-ETTTTEEE-ESSCEEECSEEEECCCEEECCCCSB-TGGGEECCCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHH
T ss_pred EE-ECCCCEEE-ECCcEEECCEEEECCCCCCCCCCCC-CcCCEEEEcCHHHHHHHHHHhhcCCcEEEECCCHHHHHHHHH
Confidence 98 88888888 6788999999999999999999999 866888888888888776554457999999999999999999
Q ss_pred HhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEcccc
Q psy2951 753 CASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGT 832 (1466)
Q Consensus 753 l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 832 (1466)
|++.|.+|+++++.+.++. +++++.+.+.+.++++||++++++++++++ . + .+.+++|+ +++|.||+|+|+
T Consensus 162 l~~~g~~Vtlv~~~~~~l~--~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~-~-~----~v~~~~g~-i~~D~vi~a~G~ 232 (367)
T 1xhc_A 162 LAEAGYHVKLIHRGAMFLG--LDEELSNMIKDMLEETGVKFFLNSELLEAN-E-E----GVLTNSGF-IEGKVKICAIGI 232 (367)
T ss_dssp HHHTTCEEEEECSSSCCTT--CCHHHHHHHHHHHHHTTEEEECSCCEEEEC-S-S----EEEETTEE-EECSCEEEECCE
T ss_pred HHhCCCEEEEEeCCCeecc--CCHHHHHHHHHHHHHCCCEEEcCCEEEEEE-e-e----EEEECCCE-EEcCEEEECcCC
Confidence 9999999999999988774 899999999999999999999999999997 2 1 46777887 999999999999
Q ss_pred ccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCCcCcc
Q psy2951 833 VLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSLST 912 (1466)
Q Consensus 833 ~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~~~~~ 912 (1466)
+|++++++.+|++.+ +| |.||+++||+.|+|||+|||+..+... .+++..|..||+.||.||++...++..
T Consensus 233 ~p~~~ll~~~gl~~~-~g-i~Vd~~~~t~~~~IyA~GD~a~~~~~~-------~~~~~~A~~qg~~aa~~i~g~~~~~~~ 303 (367)
T 1xhc_A 233 VPNVDLARRSGIHTG-RG-ILIDDNFRTSAKDVYAIGDCAEYSGII-------AGTAKAAMEQARVLADILKGEPRRYNF 303 (367)
T ss_dssp EECCHHHHHTTCCBS-SS-EECCTTSBCSSTTEEECGGGEEBTTBC-------CCSHHHHHHHHHHHHHHHTTCCCCCCS
T ss_pred CcCHHHHHhCCCCCC-CC-EEECCCcccCCCCEEEeEeeeecCCCC-------ccHHHHHHHHHHHHHHHhcCCCccCCC
Confidence 999988898999886 45 999999999999999999998753321 236789999999999999987766666
Q ss_pred cCeee-eeecCceeEEeeccCCCCceeEecccccceEEEEEecCCeEEEEEeecCchhhh
Q psy2951 913 IPFFW-TMLFGVGFRFAGYAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTVGMDPLAA 971 (1466)
Q Consensus 913 ~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~g~~~~~~ 971 (1466)
.+.++ ..+++..+..+|+++.....+ ..|.|+++++++++|++++|......
T Consensus 304 ~~~~~~~~~~~~~~~~vG~~~~~~~~~-------~~~~k~~~~~~~ilG~~~~g~~~~~~ 356 (367)
T 1xhc_A 304 KFRSTVFKFGKLQIAIIGNTKGEGKWI-------EDNTKVFYENGKIIGAVVFNDIRKAT 356 (367)
T ss_dssp SCCEEEEEETTEEEEEEECCSSCEEEE-------ETTEEEEC-----CEEEEESCHHHHH
T ss_pred CCCceEEEECCceEEEECCCCCCCccc-------ceEEEEEEECCEEEEEEEECChHHHH
Confidence 54444 457788888999876522211 45889999889999999999876543
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-39 Score=396.49 Aligned_cols=383 Identities=22% Similarity=0.339 Sum_probs=296.4
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCccchhcccCc-----------------ccccccChh
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKA-----------------DSILLRTEE 104 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~ 104 (1466)
.++||||||||+||++||..|++.++...|+++++++..+|.++++++.+.... ..+......
T Consensus 10 ~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r~~lsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (493)
T 1m6i_A 10 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPS 89 (493)
T ss_dssp SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGG
T ss_pred CcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCHHhhcCCccchhhcccccccccccccccccchH
Confidence 457999999999999999999998766777778888888888887666542110 001111111
Q ss_pred hh---------hcCCeEEEeCceEEEeccccccEEEecCCcEEecCEEEEccCCCCCCCCCCCC-----CCcEEEecCHH
Q psy2951 105 FY---------KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADG-----VNKVFYLRTVE 170 (1466)
Q Consensus 105 ~~---------~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~~-----~~~~~~~~~~~ 170 (1466)
++ .+.+++++.++.+.. .+...++|.++++.++.||+||||||++|+.++.+++ ...++++++.+
T Consensus 90 ~~~~~~~l~~~~~~gv~~~~g~~v~~-id~~~~~V~~~~g~~i~yd~lviATGs~p~~~~~~~~~~~~~~~~v~~~~~~~ 168 (493)
T 1m6i_A 90 FYVSAQDLPHIENGGVAVLTGKKVVQ-LDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIG 168 (493)
T ss_dssp GSBCTTTTTTSTTCEEEEEETCCEEE-EEGGGTEEEETTSCEEEEEEEEECCCEEECCCHHHHTSCHHHHHTEEECCSHH
T ss_pred hhcchhhhhhhhcCCeEEEcCCEEEE-EECCCCEEEECCCCEEECCEEEECCCCCCCCCCCcccccccccCceEEEcCHH
Confidence 11 256899999977764 3556688999999999999999999999986653332 23577888998
Q ss_pred HHHhhcccCCCCCcEEEECCCHhHHHHHHHHhh----CCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEEcCce
Q psy2951 171 DANNIAPHITPESNVVVIGSSFIGMEAAAFCAS----KVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKAN 246 (1466)
Q Consensus 171 ~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~----~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~ 246 (1466)
++..++..+..+++++|||+|++|+|+|..|++ .|.+|+++++.+.++.+.+++++.+.+.+.++++||++++++.
T Consensus 169 d~~~l~~~~~~~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~~l~~~~~~~~~~~l~~~GV~v~~~~~ 248 (493)
T 1m6i_A 169 DFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAI 248 (493)
T ss_dssp HHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEECSCC
T ss_pred HHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccccccCCHHHHHHHHHHHHhcCCEEEeCCE
Confidence 888877665567899999999999999999876 5789999998876666677889999999999999999999999
Q ss_pred EEEEEecCCCCeEEEEcCCCcEEeccEEEEeeccccCccccccCCceecC-CccEEECCCCCcCCCCEEEecccccccCc
Q psy2951 247 VSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNG-QKAVVVNEYLETNVPGVYAGGDIAYAPLH 325 (1466)
Q Consensus 247 v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~l~~~gl~~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~ 325 (1466)
|++++.++ +. ..+.+.+|+++++|.||+|+|++||+++++..|+++++ +|+|.||+++|| .|+|||+|||+..+..
T Consensus 249 V~~i~~~~-~~-~~v~l~dG~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~~~~ggi~Vd~~l~t-~~~IyA~GD~a~~~~~ 325 (493)
T 1m6i_A 249 VQSVGVSS-GK-LLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQA-RSNIWVAGDAACFYDI 325 (493)
T ss_dssp EEEEEEET-TE-EEEEETTSCEEEESEEEECCCEEECCTTHHHHTCCBCTTTCSEECCTTCEE-ETTEEECGGGEEEEET
T ss_pred EEEEEecC-Ce-EEEEECCCCEEECCEEEECCCCCccHHHHHHcCCccccCCCcEEECCCccc-CCCeeEeeeeEeccCc
Confidence 99998643 22 35778889999999999999999999999888999885 588999999998 5999999999986532
Q ss_pred cCCCCcceeccHHHHHHHHHHHHHHhcCCCCCCCCCCccccccc-ceeeEEEEe----------ecCC---ceE------
Q psy2951 326 SFYNKNASIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLF-GVGFRFAGY----------AAGH---TQV------ 385 (1466)
Q Consensus 326 ~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~p~~~s~~~-~~~~~~~G~----------~~~~---~~~------ 385 (1466)
. .|. .+..+|..|+.||+.||.||++....|...||+||.|+ ..++..+|. .... +..
T Consensus 326 ~-~g~-~~~~~~~~A~~qg~~aa~ni~g~~~~~~~~~~~~s~~~~~~~~~~~g~~~~~~~~~G~~~~~~~~~~~~~~~~~ 403 (493)
T 1m6i_A 326 K-LGR-RRVEHHDHAVVSGRLAGENMTGAAKPYWHQSMFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQ 403 (493)
T ss_dssp T-TEE-ECCCCHHHHHHHHHHHHHHHTSCCCCCCCCCEEEEESSTTCEEEEEECCCTTSCEEEEEECCCTTCSHHHHHHH
T ss_pred c-cCc-cccchHHHHHHHHHHHHHHhcCCCCCcCCcCceeeeeccCcceEEEeccCCCcceEEeeccccccccccccccc
Confidence 2 232 35678999999999999999999888999999999998 455555543 2110 000
Q ss_pred ---EEe-------------------cc-------cCCCeEEEEEEcCCEEEEEEEECCCHHHHHHHHHHhcCCCc
Q psy2951 386 ---DIV-------------------GD-------LEALKFTAYYSNADKVLAILTVGMDPLAAQFAEQVLEFPYS 431 (1466)
Q Consensus 386 ---~~~-------------------g~-------~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~i~~~~~ 431 (1466)
.+. |+ .....|..|++++++++|++.||. +.....++.+|+.+..
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~li~~~~~ 477 (493)
T 1m6i_A 404 SGTGIRSESETESEASEITIPPSTPAVPQAPVQGEDYGKGVIFYLRDKVVVGIVLWNI-FNRMPIARKIIKDGEQ 477 (493)
T ss_dssp HSCSCHHHHSCSCCCC--------------------CCEEEEEEEETTEEEEEEEESC-CSCHHHHHHHHHHCCB
T ss_pred ccccccccccccccccccccccccccccccccccccCCcEEEEEEeCCEEEEEEEecC-cchHHHHHHHHhCCCC
Confidence 011 11 113456789999999999999995 5566777788876654
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-38 Score=387.68 Aligned_cols=364 Identities=20% Similarity=0.223 Sum_probs=287.8
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcc---cCcccccccCHhHhhhCCcEEEEceEEE
Q psy2951 596 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD---IKADSILLRTEEFYKDNDIHVIKGKKII 672 (1466)
Q Consensus 596 ~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~gv~~~~~~~v~ 672 (1466)
+||+|||||+||++||..|++++...+|+++|+++.++|..+.+..... ...+++.....+++.+.+++++.+++|.
T Consensus 3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~V~ 82 (452)
T 3oc4_A 3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARYITEEELRRQKIQLLLNREVV 82 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC----------------CCCCHHHHHHTTEEEECSCEEE
T ss_pred CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhhhcCCCCCHHHhhcCCHHHHHHCCCEEEECCEEE
Confidence 6999999999999999999999544569999999888876665544333 2345556667788899999999999999
Q ss_pred EeccccccEEEcc---CCCEEecCEEEEcCCCCCCcCCCCCCCC--cEEEecCHHHHHhhcccCCCCCcEEEECCChHHH
Q psy2951 673 SDSELNEKKIKLQ---DGTSIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGM 747 (1466)
Q Consensus 673 ~i~~~~~~~v~~~---~~~~~~~d~lviAtG~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~ 747 (1466)
.+ +...+.+.+. ++.++.||+||||||++|+.|+++ |.+ .+++.++..++..+......+++++|||+|++|+
T Consensus 83 ~i-d~~~~~v~v~~~~~~~~~~~d~lviAtG~~p~~p~i~-g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~ 160 (452)
T 3oc4_A 83 AM-DVENQLIAWTRKEEQQWYSYDKLILATGASQFSTQIR-GSQTEKLLKYKFLSGALAAVPLLENSQTVAVIGAGPIGM 160 (452)
T ss_dssp EE-ETTTTEEEEEETTEEEEEECSEEEECCCCCBCCCCCB-TTTCTTEEEGGGCC----CCHHHHTCSEEEEECCSHHHH
T ss_pred EE-ECCCCEEEEEecCceEEEEcCEEEECCCcccCCCCCC-CCCCCCEEEeCCHHHHHHHHHHHhcCCEEEEECCCHHHH
Confidence 99 8887777652 556899999999999999999999 876 6777777666665555555689999999999999
Q ss_pred HHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEE
Q psy2951 748 EAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVI 827 (1466)
Q Consensus 748 e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi 827 (1466)
|+|..|++.|.+|+++++.+.++...+++++.+.+.+.++++||++++++++++++.. ++++ .+.++++ ++++|.||
T Consensus 161 E~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~v-~v~~~~g-~i~aD~Vv 237 (452)
T 3oc4_A 161 EAIDFLVKMKKTVHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEET-ANGI-VLETSEQ-EISCDSGI 237 (452)
T ss_dssp HHHHHHHHTTCEEEEEESSSSSSTTTCCHHHHHHHHHHHHTTTEEEEETCCEEEEEEC-SSCE-EEEESSC-EEEESEEE
T ss_pred HHHHHHHhCCCeEEEEEccCccccccCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEcc-CCeE-EEEECCC-EEEeCEEE
Confidence 9999999999999999999988866689999999999999999999999999999843 4445 6777776 89999999
Q ss_pred EccccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCC
Q psy2951 828 VGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK 907 (1466)
Q Consensus 828 ~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~ 907 (1466)
+|+|++|++++++.. ++++++|+|.||+++||+.|+|||+|||+..+... .+.+.++++++.|..||+.||.||++..
T Consensus 238 ~A~G~~p~~~~l~~~-~~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~-~~~~~~~~~~~~A~~~g~~aa~~i~g~~ 315 (452)
T 3oc4_A 238 FALNLHPQLAYLDKK-IQRNLDQTIAVDAYLQTSVPNVFAIGDCISVMNEP-VAETFYAPLVNNAVRTGLVVANNLEEKT 315 (452)
T ss_dssp ECSCCBCCCSSCCTT-SCBCTTSCBCCCTTCBCSSTTEEECGGGBCEEEGG-GTEEECCCCHHHHHHHHHHHTTSSSSCC
T ss_pred ECcCCCCChHHHHhh-hccCCCCCEEECcCccCCCCCEEEEEeeEEecccc-CCceeecchHHHHHHHHHHHHHHhcCCC
Confidence 999999999988765 88889999999999999999999999999876543 3445556788999999999999999876
Q ss_pred CcCcc-cCeeeeeecCceeEEeeccCCCCce----eEecc---------cccceEEEEEec--CCeEEEEEeecC
Q psy2951 908 TSLST-IPFFWTMLFGVGFRFAGYAAGHTQV----DIVGD---------LEALKFTAYYSN--ADKVLAILTVGM 966 (1466)
Q Consensus 908 ~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~---------~~~~~~~~~~~~--~~~i~g~~~~g~ 966 (1466)
..++. .+..++.+|+..+..+|+++...+. +.... -++..|+|++++ +++++|++++|.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~ 390 (452)
T 3oc4_A 316 HRFIGSLRTMGTKVGDYYLASTGLTETEGLFFPQTLASIIVRQPAPPLQHGTEILGKLIYDKVTQRVLGAQLCSK 390 (452)
T ss_dssp CCCCCCCCCEEEEETTEEEEEEECCSGGGGGSSSCEEEEEEEEECTTTTCSCEEEEEEEEETTTCBEEEEEEEES
T ss_pred ccCCCccccEEEEEcCeeEEEecCCHHHHHHCCCceEEEEEecCCccCCCCCeEEEEEEEECCCCEEEEEEEEeC
Confidence 65542 3344566788888889987632110 10000 124679999884 599999999998
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-38 Score=387.54 Aligned_cols=366 Identities=21% Similarity=0.296 Sum_probs=289.5
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcc--cCcccccccCHhHh-hhCCcEEEEceEE
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD--IKADSILLRTEEFY-KDNDIHVIKGKKI 671 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~gv~~~~~~~v 671 (1466)
+++|+|||||+||+++|+.|++++...+|+++|+++.+++..+.+...+. ...+++..+..+.+ ++.+++++.+++|
T Consensus 3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~v 82 (449)
T 3kd9_A 3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGIPYVVEGLSTPDKLMYYPPEVFIKKRGIDLHLNAEV 82 (449)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC------------------------CTHHHHTTCEEETTCEE
T ss_pred cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcCCccccCCCCCHHHhhhcCHHHHHHhcCcEEEecCEE
Confidence 57999999999999999999999665669999999877766554443332 23444555454555 6789999999889
Q ss_pred EEeccccccEEEccCC-CEEecCEEEEcCCCCCCcCCCCCCCC--cEEEecCHHHHHhhcccCC--CCCcEEEECCChHH
Q psy2951 672 ISDSELNEKKIKLQDG-TSIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHIT--PESNVVVIGSSFIG 746 (1466)
Q Consensus 672 ~~i~~~~~~~v~~~~~-~~~~~d~lviAtG~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~--~~~~vvVvG~G~~g 746 (1466)
..+ +...+.+.+.++ .++.||+||||||++|+.|+++ |.+ +++..++..++..+.+... .+++++|||+|++|
T Consensus 83 ~~i-~~~~~~v~~~~g~~~~~~d~lviAtG~~p~~p~i~-G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g 160 (449)
T 3kd9_A 83 IEV-DTGYVRVRENGGEKSYEWDYLVFANGASPQVPAIE-GVNLKGVFTADLPPDALAIREYMEKYKVENVVIIGGGYIG 160 (449)
T ss_dssp EEE-CSSEEEEECSSSEEEEECSEEEECCCEEECCCSCB-TTTSTTEECSCSTHHHHHHHHHHSSSCCCEEEEECCSHHH
T ss_pred EEE-ecCCCEEEECCceEEEEcCEEEECCCCCCCCCCCC-CCCCCCEEEeCCHHHHHHHHHHHHhcCCCeEEEECCCHHH
Confidence 999 888888888776 4899999999999999999998 876 6787888888877766554 68999999999999
Q ss_pred HHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEE
Q psy2951 747 MEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLV 826 (1466)
Q Consensus 747 ~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~v 826 (1466)
+|+|..|++.|.+|+++++.++++...+++++.+.+.+.+++. |++++++.+.+++.. + .+..+ +.+++++++|.|
T Consensus 161 ~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~-v~i~~~~~v~~i~~~-~-~v~~v-~~~g~~i~~D~V 236 (449)
T 3kd9_A 161 IEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEKLKKH-VNLRLQEITMKIEGE-E-RVEKV-VTDAGEYKAELV 236 (449)
T ss_dssp HHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHTTT-SEEEESCCEEEEECS-S-SCCEE-EETTEEEECSEE
T ss_pred HHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhC-cEEEeCCeEEEEecc-C-cEEEE-EeCCCEEECCEE
Confidence 9999999999999999999998886558999999999999999 999999999999843 2 33333 446779999999
Q ss_pred EEccccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccC
Q psy2951 827 IVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEK 906 (1466)
Q Consensus 827 i~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~ 906 (1466)
|+|+|++|++++++.+|++++++|+|.||++++|+.|+|||+|||+..+... +|.+..+++++.|..||+.+|.||+|.
T Consensus 237 v~a~G~~p~~~l~~~~gl~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~~~-~g~~~~~~l~~~A~~~g~~aa~~i~g~ 315 (449)
T 3kd9_A 237 ILATGIKPNIELAKQLGVRIGETGAIWTNEKMQTSVENVYAAGDVAETRHVI-TGRRVWVPLAPAGNKMGYVAGSNIAGK 315 (449)
T ss_dssp EECSCEEECCHHHHHTTCCBCTTSSBCCCTTCBCSSTTEEECSTTBCEEBTT-TCSEECCCCHHHHHHHHHHHHHHHTTC
T ss_pred EEeeCCccCHHHHHhCCccCCCCCCEEECCCCccCCCCEEEeeeeeeecccc-CCceEEeccHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999877654 455666788999999999999999998
Q ss_pred CCcCcc-cCeeeeeecCceeEEeeccCC------CCcee--Eec------c-cccceEEEEEec--CCeEEEEEeecCc
Q psy2951 907 KTSLST-IPFFWTMLFGVGFRFAGYAAG------HTQVD--IVG------D-LEALKFTAYYSN--ADKVLAILTVGMD 967 (1466)
Q Consensus 907 ~~~~~~-~~~~~~~~~~~~~~~~g~~~~------~~~~~--~~~------~-~~~~~~~~~~~~--~~~i~g~~~~g~~ 967 (1466)
...++. .+++|+.+++..+..+|+++. .+-.. ... . -++..|+|++++ +++++|++++|..
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~ 394 (449)
T 3kd9_A 316 ELHFPGVLGTAVTKFMDVEIGKTGLTEMEALKEGYDVRTAFIKASTRPHYYPGGREIWLKGVVDNETNRLLGVQVVGSD 394 (449)
T ss_dssp CCCCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCEEEEEEEEESSCTTSTTCCEEEEEEEEETTTCBEEEEEEEESS
T ss_pred CccCCCcccceEEEEcCcEEEEecCCHHHHHHCCCceEEEEEecCCccccCCCCceEEEEEEEECCCCEEEEEEEEChH
Confidence 766644 466777889989999998752 11111 000 0 124578999884 4899999999988
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-38 Score=387.85 Aligned_cols=365 Identities=22% Similarity=0.323 Sum_probs=296.3
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcc---c--CcccccccCHhHhhhCCcEEEEceE
Q psy2951 596 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD---I--KADSILLRTEEFYKDNDIHVIKGKK 670 (1466)
Q Consensus 596 ~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~gv~~~~~~~ 670 (1466)
+||+|||||+||++||..|++++...+|+++|+++..++..+.+..... . +.+++.....+++++.+++++.+++
T Consensus 1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~ 80 (452)
T 2cdu_A 1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSCGIALYLGKEIKNNDPRGLFYSSPEELSNLGANVQMRHQ 80 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGGGHHHHHTTCBGGGCGGGGBSCCHHHHHHTTCEEEESEE
T ss_pred CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcccccchhhhcCCcccCCHHHhhhcCHHHHHHcCCEEEeCCE
Confidence 5899999999999999999999333449999998876665554332221 1 3555666667788889999999998
Q ss_pred EEEeccccccEEEccC-----CCEEecCEEEEcCCCCCCcCCCCCCCC--cEEEecCHHHHHhhcccCCCCCcEEEECCC
Q psy2951 671 IISDSELNEKKIKLQD-----GTSIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSS 743 (1466)
Q Consensus 671 v~~i~~~~~~~v~~~~-----~~~~~~d~lviAtG~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G 743 (1466)
|..+ +...+.+.+.+ +.++.||+||||||++|+.|+++ |.+ ++++++++.+...+.+....+++++|||+|
T Consensus 81 v~~i-~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs~p~~p~i~-g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG 158 (452)
T 2cdu_A 81 VTNV-DPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPPIP-GIDSSRVYLCKNYNDAKKLFEEAPKAKTITIIGSG 158 (452)
T ss_dssp EEEE-EGGGTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCT-TTTSTTEEECSSHHHHHHHHHHGGGCSEEEEECCS
T ss_pred EEEE-EcCCCEEEEEecCCCceEEEECCEEEEccCCCcCCCCCC-CCCCCCEEEeCcHHHHHHHHHHhccCCeEEEECcC
Confidence 9988 77677777643 45799999999999999999998 875 688888888887776666679999999999
Q ss_pred hHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEec
Q psy2951 744 FIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPA 823 (1466)
Q Consensus 744 ~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~ 823 (1466)
++|+|+|..|++.|.+|+++++.+.++...+++++.+.+.+.++++||++++++++++++. +++++..+.+ +|+++++
T Consensus 159 ~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~-~~~~v~~v~~-~g~~i~~ 236 (452)
T 2cdu_A 159 YIGAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEE-VDDEIITKTL-DGKEIKS 236 (452)
T ss_dssp HHHHHHHHHHHTTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEESSCEEEEEE-ETTEEEEEET-TSCEEEE
T ss_pred HHHHHHHHHHHhcCCEEEEEEcCCchhhhhhhhhHHHHHHHHHHHCCCEEEcCCeeEEEEc-CCCeEEEEEe-CCCEEEC
Confidence 9999999999999999999999998886578999999999999999999999999999984 2445555666 7789999
Q ss_pred CEEEEccccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHh
Q psy2951 824 DLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNM 903 (1466)
Q Consensus 824 D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i 903 (1466)
|.||+|+|++|++++++.. ++++++|+|.||+++||+.|+|||+|||+..+... .+.+.++++++.|..||+.||.||
T Consensus 237 D~vv~a~G~~p~~~ll~~~-l~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~-~g~~~~~~~~~~A~~~g~~aa~~i 314 (452)
T 2cdu_A 237 DIAILCIGFRPNTELLKGK-VAMLDNGAIITDEYMHSSNRDIFAAGDSAAVHYNP-TNSNAYIPLATNAVRQGRLVGLNL 314 (452)
T ss_dssp SEEEECCCEEECCGGGTTT-SCBCTTSCBCCCTTSBCSSTTEEECSTTBCEEETT-TTEEECCCCHHHHHHHHHHHHHTS
T ss_pred CEEEECcCCCCCHHHHHHh-hhcCCCCCEEECCCcCcCCCCEEEcceEEEecccc-CCCeeecchHHHHHHHHHHHHHHh
Confidence 9999999999999998887 88888999999999999999999999999876543 344556678999999999999999
Q ss_pred ccCCCcCc-ccCeeeeeecCceeEEeeccCCCC-----cee---Ee----cc---cccceEEEEEe--cCCeEEEEEeec
Q psy2951 904 VEKKTSLS-TIPFFWTMLFGVGFRFAGYAAGHT-----QVD---IV----GD---LEALKFTAYYS--NADKVLAILTVG 965 (1466)
Q Consensus 904 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~-----~~~---~~----~~---~~~~~~~~~~~--~~~~i~g~~~~g 965 (1466)
++....+. ..+++|+.+|+..+..+|+++... +.. .. .. .+...|.|+++ ++++++|++++|
T Consensus 315 ~g~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g 394 (452)
T 2cdu_A 315 TEDKVKDMGTQSSSGLKLYGRTYVSTGINTALAKANNLKVSEVIIADNYRPEFMLSTDEVLMSLVYDPKTRVILGGALSS 394 (452)
T ss_dssp SSCCCCCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCCEEEEEEEESSCTTBSCCCEEEEEEEECTTTCBEEEEEEEE
T ss_pred CCCCCcCCCccceEEEEECCeeeEeecCCHHHHHHcCCceEEEEEecCCccccCCCCceEEEEEEEECCCCEEEEEEEEc
Confidence 98765544 356778888988889999764211 111 00 00 12346888888 368999999999
Q ss_pred C
Q psy2951 966 M 966 (1466)
Q Consensus 966 ~ 966 (1466)
.
T Consensus 395 ~ 395 (452)
T 2cdu_A 395 M 395 (452)
T ss_dssp S
T ss_pred C
Confidence 8
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-38 Score=388.41 Aligned_cols=367 Identities=20% Similarity=0.307 Sum_probs=281.6
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcc---cCcccc------cccCHhHhh-hCCcE
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD---IKADSI------LLRTEEFYK-DNDIH 664 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~------~~~~~~~~~-~~gv~ 664 (1466)
+++|+|||||+||++||+.|++++...+|+++|+++.++|..+.+...+. ...+.+ .....+++. +.+++
T Consensus 3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 82 (472)
T 3iwa_A 3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQATPYNVVRDPEFFRINKDVE 82 (472)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC-------------------------------------------CE
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccccccccchhhcCCCCchHHhccccchhccCHHHHhhhcCcE
Confidence 47999999999999999999999544559999999888777665544332 122333 233334444 57999
Q ss_pred EEEceEEEEeccccccEEEccC---CC--EEecCEEEEcCCCCCCcCCCCCCCC--cEEEecCHHHHHhhcccCC--CCC
Q psy2951 665 VIKGKKIISDSELNEKKIKLQD---GT--SIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHIT--PES 735 (1466)
Q Consensus 665 ~~~~~~v~~i~~~~~~~v~~~~---~~--~~~~d~lviAtG~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~--~~~ 735 (1466)
++.+++|..+ +...+.+.+.+ +. ++.||+||||||++|+.|+++ |.+ +++.+.+..++..+...+. .++
T Consensus 83 ~~~~~~V~~i-d~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~i~-G~~~~~v~~~~~~~~~~~l~~~l~~~~~~ 160 (472)
T 3iwa_A 83 ALVETRAHAI-DRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRPPVE-GMDLAGVTPVTNLDEAEFVQHAISAGEVS 160 (472)
T ss_dssp EECSEEEEEE-ETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCSCT-TTTSBTEEECCSHHHHHHHHHHCCTTSCS
T ss_pred EEECCEEEEE-ECCCCEEEEeecCCCCEEEEECCEEEEeCCCCcCCCCCC-CCCCCCEEEeCCHHHHHHHHHHhhcCCCC
Confidence 9999999999 88888777654 55 799999999999999999999 875 7888888888877765553 489
Q ss_pred cEEEECCChHHHHHHHHHhcc-CCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEE
Q psy2951 736 NVVVIGSSFIGMEAAAFCASK-VKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAAN 814 (1466)
Q Consensus 736 ~vvVvG~G~~g~e~A~~l~~~-g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~ 814 (1466)
+++|||+|++|+|+|..|++. |.+|+++++.+.++...+++++.+.+.+.+++.||++++++++++++. +++.+ .+.
T Consensus 161 ~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~-~~~~v-~v~ 238 (472)
T 3iwa_A 161 KAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLEG-ENGKV-ARV 238 (472)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEE-SSSBE-EEE
T ss_pred EEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccccccCHHHHHHHHHHHHhcCCEEEeCCEEEEEEc-cCCeE-EEE
Confidence 999999999999999999999 999999999998875588999999999999999999999999999984 34444 377
Q ss_pred CCCCcEEecCEEEEccccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHH
Q psy2951 815 LDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQY 894 (1466)
Q Consensus 815 ~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~ 894 (1466)
+.+|+++++|.||+|+|++|++++++.+|++++++|+|.||++++|+.|+|||+|||+..+... .|.+..+++++.|..
T Consensus 239 ~~~g~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~-~g~~~~~~~~~~A~~ 317 (472)
T 3iwa_A 239 ITDKRTLDADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRTSDPDIFAGGDCVTIPNLV-TGKPGFFPLGSMANR 317 (472)
T ss_dssp EESSCEEECSEEEECSCEEECCHHHHHHTCCBCTTCCEECCTTCBCSSTTEEECGGGEEEEBTT-TSSEECCCCTTHHHH
T ss_pred EeCCCEEEcCEEEECCCCCcCHHHHHhCCccCCCCCCEEECCCcccCCCCEEEeccceeccccc-CCceeecchHHHHHH
Confidence 7888899999999999999999888888999999999999999999999999999999877654 455666778899999
Q ss_pred HHHHHHHHhccCCCcCc-ccCeeeeeecCceeEEeeccCC------CCce--eEec------c-cccceEEEEEe--cCC
Q psy2951 895 HGRIAALNMVEKKTSLS-TIPFFWTMLFGVGFRFAGYAAG------HTQV--DIVG------D-LEALKFTAYYS--NAD 956 (1466)
Q Consensus 895 ~g~~aA~~i~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~------~~~~--~~~~------~-~~~~~~~~~~~--~~~ 956 (1466)
||++||+||+|....+. .+|++++.+|+..+..+|+++. .+-. .... . -++..|+|+++ +++
T Consensus 318 ~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~ 397 (472)
T 3iwa_A 318 QGRVIGTNLADGDATFPGAVGSWAVKLFEGSASGAGLTVEGALREGYDAVNVHVEQFDRAHFYPEKTIMTLQLVVDRPTR 397 (472)
T ss_dssp HHHHHHHHHTTCCCCCCCBCCCEEEECSSCEEEEEECCHHHHHHTTCCEEEEEEEC-----------CEEEEEEEETTTC
T ss_pred HHHHHHHHhcCCCccCCCCCcceEEEECCceeEEEECCHHHHHHcCCceEEEEEecCCccCccCCCceEEEEEEEECCCC
Confidence 99999999999876665 4566777788888999998752 1111 1100 0 13457889988 579
Q ss_pred eEEEEEeecC
Q psy2951 957 KVLAILTVGM 966 (1466)
Q Consensus 957 ~i~g~~~~g~ 966 (1466)
+++|++++|.
T Consensus 398 ~ilG~~~~g~ 407 (472)
T 3iwa_A 398 RVLGIQGFST 407 (472)
T ss_dssp BEEEEEEEES
T ss_pred EEEEEEEECC
Confidence 9999999999
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-38 Score=395.09 Aligned_cols=388 Identities=20% Similarity=0.298 Sum_probs=315.2
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhcc---CcccccccCh-hhhccCCcEEEcCC
Q psy2951 1065 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDI---KADSILLRTE-EFYKDNDIHVIKGK 1140 (1466)
Q Consensus 1065 ~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~-~~~~~~~v~~~~~~ 1140 (1466)
.+++|||||||+||++||..|++.+...+|+|||++++.+|.++.++..+.. ....+..... .+.++.++++++++
T Consensus 35 ~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~~~~lp~~~~g~~~~~~~~~~~~~~~~~~~~gi~v~~~~ 114 (588)
T 3ics_A 35 GSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCGLPYYIGGVITERQKLLVQTVERMSKRFNLDIRVLS 114 (588)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTTSSCCGGGGBSSCHHHHHHHTTCEEECSE
T ss_pred cCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccccCCCCchhhcCcCCChHHhhccCHHHHHHhcCcEEEECC
Confidence 4578999999999999999999995445999999999999988766655431 2233333333 44557899999999
Q ss_pred eEEEeecCCCCeEEec---CCc--EEecCeEEEecCCCCCcCCCCCCC-C--cEEEecCHHHHHhhhcccC--CCCeEEE
Q psy2951 1141 KIISDSELNEKKIKLQ---DGT--SIDFTKIYLATGSSPRTISQADGV-N--KVFYLRTVEDANNIAPHIT--PESNVVV 1210 (1466)
Q Consensus 1141 ~v~~i~d~~~~~v~~~---~g~--~~~yd~lvlAtG~~~~~~~~~~g~-~--~v~~~~~~~~~~~l~~~~~--~~~~vvV 1210 (1466)
+|+.+ ++..+.+.+. +|. .+.||+||+|||++|+.|++| |. + ++++.++..++.++++.+. .+++++|
T Consensus 115 ~V~~i-d~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~i~-G~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvV 192 (588)
T 3ics_A 115 EVVKI-NKEEKTITIKNVTTNETYNEAYDVLILSPGAKPIVPSIP-GIEEAKALFTLRNVPDTDRIKAYIDEKKPRHATV 192 (588)
T ss_dssp EEEEE-ETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCT-TTTTCTTEEECSSHHHHHHHHHHHHHHCCSEEEE
T ss_pred EEEEE-ECCCCEEEEeecCCCCEEEEeCCEEEECCCCCCCCCCCC-CcccCCCeEEeCCHHHHHHHHHHHhhcCCCeEEE
Confidence 99999 9999988875 465 789999999999999999999 88 4 8999999999888766542 4899999
Q ss_pred EcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCC
Q psy2951 1211 IGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGT 1290 (1466)
Q Consensus 1211 vG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~ 1290 (1466)
||+|++|+|+|..|++.|.+|+++++.+.+++. +++++.+.+.+.+++.||+++++++|++++ .++ . .|.+.+|+
T Consensus 193 iGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~-~~~-~--~v~~~~g~ 267 (588)
T 3ics_A 193 IGGGFIGVEMVENLRERGIEVTLVEMANQVMPP-IDYEMAAYVHEHMKNHDVELVFEDGVDALE-ENG-A--VVRLKSGS 267 (588)
T ss_dssp ECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHHTTCEEECSCCEEEEE-GGG-T--EEEETTSC
T ss_pred ECCCHHHHHHHHHHHhCCCeEEEEecCCccccc-CCHHHHHHHHHHHHHcCCEEEECCeEEEEe-cCC-C--EEEECCCC
Confidence 999999999999999999999999999988874 889999999999999999999999999998 332 2 47889999
Q ss_pred eeecCEEEEeeccccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHH
Q psy2951 1291 TIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIA 1370 (1466)
Q Consensus 1291 ~i~~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~a 1370 (1466)
++++|.||+|+|..|++++++..|+.++.+|+|.||++++|+.|+|||+|||+..+... .|.+.....|+.|..||++|
T Consensus 268 ~i~~D~Vi~a~G~~p~~~~l~~~g~~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~-~g~~~~~~~~~~A~~~g~~a 346 (588)
T 3ics_A 268 VIQTDMLILAIGVQPESSLAKGAGLALGVRGTIKVNEKFQTSDPHIYAIGDAIEVKDFV-TETETMIPLAWPANRQGRML 346 (588)
T ss_dssp EEECSEEEECSCEEECCHHHHHTTCCBCGGGCBCCCTTSBCSSTTEEECGGGBCEEBTT-TCCEECCCCHHHHHHHHHHH
T ss_pred EEEcCEEEEccCCCCChHHHHhcCceEcCCCCEEECCccccCCCCEEEeeeeeeccccc-CCcccccccHHHHHHHHHHH
Confidence 99999999999999999999999999998899999999999999999999999887764 46677788999999999999
Q ss_pred HHHhcC-CCCCCC-CCccceeccccccEEEEeeCC------CCc--eEEEc--CC----c-CCceEEEEEEe--CCEEEE
Q psy2951 1371 ALNMVE-KKTSLS-TIPFFWTMLFGVGFRFAGYAA------GHT--QVDIV--GD----L-EALKFTAYYSN--ADKVLA 1431 (1466)
Q Consensus 1371 a~~i~g-~~~~~~-~~p~~w~~~~~~~~~~~g~~~------~~~--~~~~~--~~----~-~~~~~~~~~~~--~~~~~~ 1431 (1466)
|+||+| ....+. .+|..+...++..+-.+|+.+ +.+ ..... +. + ++..|++..++ +++|+|
T Consensus 347 a~~i~g~~~~~~~~~~~~~~~~~~~~~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~~~~~~ilG 426 (588)
T 3ics_A 347 ADIIHGHTDSLYKGTLGTSVAKVFDLTVATTGLNEKILKRLNIPYEVVHVQANSHAGYYPNATPVLIKLIFNKDSGKIYG 426 (588)
T ss_dssp HHHHTTCCSSCCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCCEEEEEEEESSCTTSTTCCEEEEEEEECTTTCBEEE
T ss_pred HHHhcCCCccccCCcccceEEEECCeEEEEecCCHHHHHHcCCCeEEEEEecCCccccCCCCceEEEEEEEECCCCeEEE
Confidence 999999 655554 456667777888888888753 222 11111 10 0 23458888774 689999
Q ss_pred EEEecCc---HHHHHHHHHHHcCCCCChhccccc
Q psy2951 1432 ILTVGMD---PLAAQFAERIKMQKYIQKDQIENN 1462 (1466)
Q Consensus 1432 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 1462 (1466)
+..+|.. ..+..+.-+|+.+ ++.++|++.
T Consensus 427 ~~~~g~~~~~e~i~~~~~ai~~~--~t~~~l~~~ 458 (588)
T 3ics_A 427 AQTLGRDGVDKRMDVIATAIKAN--LTVLDLPDL 458 (588)
T ss_dssp EEEEESSSHHHHHHHHHHHHHTT--CBTTTGGGC
T ss_pred EEEEcCCcHHHHHHHHHHHHHcC--CCHHHhhhh
Confidence 9999963 3455666677777 455555443
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=392.26 Aligned_cols=369 Identities=18% Similarity=0.278 Sum_probs=299.6
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcc---cCcccccccCHhHhh-hCCcEEEEceE
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD---IKADSILLRTEEFYK-DNDIHVIKGKK 670 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~gv~~~~~~~ 670 (1466)
+++|+|||||+||++||+.|++++...+|+++++++.++|..+.+..... .....+..+..+.+. +.+++++.+++
T Consensus 1 M~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 80 (565)
T 3ntd_A 1 MKKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCGLPYHISGEIAQRSALVLQTPESFKARFNVEVRVKHE 80 (565)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTSSSCCGGGGBCCCHHHHHHHHCCEEETTEE
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccccccCchHHhcCCcCChHHhhccCHHHHHHhcCcEEEECCE
Confidence 36899999999999999999999666679999999988887665554433 123344444445444 47999999999
Q ss_pred EEEeccccccEEEccC---CC--EEecCEEEEcCCCCCCcCCCCCCCC--cEEEecCHHHHHhhcccC--CCCCcEEEEC
Q psy2951 671 IISDSELNEKKIKLQD---GT--SIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHI--TPESNVVVIG 741 (1466)
Q Consensus 671 v~~i~~~~~~~v~~~~---~~--~~~~d~lviAtG~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~--~~~~~vvVvG 741 (1466)
|+.+ +...+.+.+.+ +. ++.||+||||||++|+.|++| |.+ .++..++..++..+.+.+ ..+++|+|||
T Consensus 81 V~~i-d~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~ip-G~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvViG 158 (565)
T 3ntd_A 81 VVAI-DRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPPIP-GVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVG 158 (565)
T ss_dssp EEEE-ETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCT-TCCSTTEECCSSHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred EEEE-ECCCCEEEEEecCCCCeEEEECCEEEECCCCCCCCCCCC-CCCCCCEEEeCCHHHHHHHHHHHhhCCCCEEEEEC
Confidence 9999 88887777653 43 799999999999999999999 875 778888888776665322 3578999999
Q ss_pred CChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEec----------------
Q psy2951 742 SSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKN---------------- 805 (1466)
Q Consensus 742 ~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~---------------- 805 (1466)
+|++|+|+|..|++.|.+|+++++.+.++. .+++++.+.+.+.+++.||++++++.+++++..
T Consensus 159 gG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~ 237 (565)
T 3ntd_A 159 GGFIGLEMMESLHHLGIKTTLLELADQVMT-PVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAH 237 (565)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEEESSSSSCT-TSCHHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTT
T ss_pred CCHHHHHHHHHHHhcCCcEEEEEcCCccch-hcCHHHHHHHHHHHHHCCCEEEeCCeEEEEecccccccccccccccccc
Confidence 999999999999999999999999998774 789999999999999999999999999999852
Q ss_pred --CCCceEEEECCCCcEEecCEEEEccccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCce
Q psy2951 806 --EKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKN 883 (1466)
Q Consensus 806 --~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~ 883 (1466)
.++. ..+.+.+|+++++|.||+|+|++|++++++.+|++++++|+|.||++++|+.|+|||+|||+..+... +|.+
T Consensus 238 ~~~~~~-~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~g~~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~-~g~~ 315 (565)
T 3ntd_A 238 QHIKGH-LSLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQTSDPAIYAVGDAVEEQDFV-TGQA 315 (565)
T ss_dssp CCTTCE-EEEEETTSCEEEESEEEECSCEEECCHHHHHHTCCBCTTSSBCCCTTCBCSSTTEEECGGGBCEEBTT-TCCE
T ss_pred ccCCCc-EEEEEcCCCEEEcCEEEECcCCccchHHHHhCCcccCCCCCEEECCCcccCCCCEEEeeeeEeecccc-CCce
Confidence 2333 35667888899999999999999999988888999999999999999999999999999999877654 4556
Q ss_pred eeeccHHHHHHHHHHHHHHhccCCCcCcccCe-eeeeecCceeEEeeccCC------CC--ceeEec------c-cccce
Q psy2951 884 ASIGHYQLAQYHGRIAALNMVEKKTSLSTIPF-FWTMLFGVGFRFAGYAAG------HT--QVDIVG------D-LEALK 947 (1466)
Q Consensus 884 ~~~~~~~~A~~~g~~aA~~i~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~------~~--~~~~~~------~-~~~~~ 947 (1466)
..+++++.|..||+.||+||+++...++..+. .++.+|+..+..+|+++. .+ ...... . -++..
T Consensus 316 ~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~ 395 (565)
T 3ntd_A 316 CLVPLAGPANRQGRMAADNMFGREERYQGTQGTAICKVFDLAVGATGKNEKQLKQAGIAFEKVYVHTASHASYYPGAEVV 395 (565)
T ss_dssp ECCCCHHHHHHHHHHHHHHHTTCCCCCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCCEEEEEEEESSCTTSTTCCEE
T ss_pred eecccHHHHHHHHHHHHHHhcCCCccCCCcccceEEEEcCcEEEEecCCHHHHHHcCCCeEEEEEecCcccCcCCCCceE
Confidence 66788999999999999999998777766543 445688888889998752 11 111110 0 12456
Q ss_pred EEEEEe--cCCeEEEEEeecCch
Q psy2951 948 FTAYYS--NADKVLAILTVGMDP 968 (1466)
Q Consensus 948 ~~~~~~--~~~~i~g~~~~g~~~ 968 (1466)
|+|+++ ++++++|++++|...
T Consensus 396 ~~k~v~~~~~~~ilG~~~~g~~a 418 (565)
T 3ntd_A 396 SFKLLFDPVKGTIFGAQAVGKDG 418 (565)
T ss_dssp EEEEEECTTTCBEEEEEEEESSS
T ss_pred EEEEEEECCCCEEEEEEEECCcc
Confidence 899998 579999999999985
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-37 Score=379.78 Aligned_cols=366 Identities=21% Similarity=0.330 Sum_probs=292.8
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcc---cCcccccccCHhHhh-hCCcEEEEceE
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD---IKADSILLRTEEFYK-DNDIHVIKGKK 670 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~gv~~~~~~~ 670 (1466)
++||+|||||+||++||..|++.+...+|+++|+++..+|..+.+..... .+.+++..+..+.+. ..+++++.+++
T Consensus 36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gv~~~~~~~ 115 (480)
T 3cgb_A 36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYVISGAIASTEKLIARNVKTFRDKYGIDAKVRHE 115 (480)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGGHHHHHTTSSSCGGGGBSSCHHHHHHTTCCEEESSEE
T ss_pred cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCCcchhhcCCcCCHHHhhhcCHHHHHhhcCCEEEeCCE
Confidence 57999999999999999999998444559999999877776654443322 234556666667674 45999999988
Q ss_pred EEEeccccccEEEccC---CC--EEecCEEEEcCCCCCCcCCCCCCCC--cEEEecCHHHHHhhcccCC--CCCcEEEEC
Q psy2951 671 IISDSELNEKKIKLQD---GT--SIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHIT--PESNVVVIG 741 (1466)
Q Consensus 671 v~~i~~~~~~~v~~~~---~~--~~~~d~lviAtG~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~--~~~~vvVvG 741 (1466)
|..+ +...+.+.+.+ ++ ++.||+||||||++|+.|+++ |.+ +++++.+.+++..+.+.+. .+++|+|||
T Consensus 116 v~~i-~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~i~-G~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvViG 193 (480)
T 3cgb_A 116 VTKV-DTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMPEWE-GRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIG 193 (480)
T ss_dssp EEEE-ETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCB-TTTSBTEECCSSHHHHHHHHHHHHSSCCCEEEEEC
T ss_pred EEEE-ECCCCEEEEEEcCCCceEEEEcCEEEECCCCcccCCCCC-CccCCCEEEeCCHHHHHHHHHHhhhcCCCeEEEEC
Confidence 9988 77777776643 65 799999999999999999998 875 6788888888877665443 589999999
Q ss_pred CChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEE
Q psy2951 742 SSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTI 821 (1466)
Q Consensus 742 ~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i 821 (1466)
+|++|+|+|..|++.|.+|+++++.+.++ +.+++++.+.+.+.+++.||++++++++++++.+ +++..+.++ +.++
T Consensus 194 gG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~~v~~v~~~-~~~i 269 (480)
T 3cgb_A 194 GGAIGLEMAETFVELGKKVRMIERNDHIG-TIYDGDMAEYIYKEADKHHIEILTNENVKAFKGN--ERVEAVETD-KGTY 269 (480)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEECCGGGTT-SSSCHHHHHHHHHHHHHTTCEEECSCCEEEEEES--SBEEEEEET-TEEE
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEeCCchh-hcCCHHHHHHHHHHHHHcCcEEEcCCEEEEEEcC--CcEEEEEEC-CCEE
Confidence 99999999999999999999999998766 4688999999999999999999999999999843 345455554 4589
Q ss_pred ecCEEEEccccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHH
Q psy2951 822 PADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAAL 901 (1466)
Q Consensus 822 ~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~ 901 (1466)
++|.||+|+|++|++++++..|++++++|+|.||+++||+.|+|||+|||+..+... .+.+..++++..|..||+.+|.
T Consensus 270 ~~D~vi~a~G~~p~~~~l~~~g~~~~~~G~I~Vd~~~~ts~p~IyA~GD~~~~~~~~-~g~~~~~~~~~~A~~qg~~aa~ 348 (480)
T 3cgb_A 270 KADLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQTNVQDVYAAGDCATHYHVI-KEIHDHIPIGTTANKQGRLAGL 348 (480)
T ss_dssp ECSEEEECSCEEESCGGGTTSCCCBCTTSCBCCCTTSBCSSTTEEECGGGBCEEBTT-TCSEECCCCHHHHHHHHHHHHH
T ss_pred EcCEEEECcCCCcChHHHHhCCcccCCCCCEEECCCccCCCCCEEEeeeEEEecCCC-CCcceecchHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999876543 3455566789999999999999
Q ss_pred HhccCCCcCcc-cCeeeeeecCceeEEeeccCC------CC--ceeEecc-------cccceEEEEEe--cCCeEEEEEe
Q psy2951 902 NMVEKKTSLST-IPFFWTMLFGVGFRFAGYAAG------HT--QVDIVGD-------LEALKFTAYYS--NADKVLAILT 963 (1466)
Q Consensus 902 ~i~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~------~~--~~~~~~~-------~~~~~~~~~~~--~~~~i~g~~~ 963 (1466)
||++....+.. .+.+|+.+++..+..+|+++. .+ ....... .+...|.|+++ ++++++|+++
T Consensus 349 ~i~g~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~ 428 (480)
T 3cgb_A 349 NMLDKRRAFKGTLGTGIIKFMNLTLARTGLNEKEAKGLHIPYKTVKVDSTNMAGYYPNAKPLYLKLLYRSDTKQLLGGQV 428 (480)
T ss_dssp HHTTCCCCCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCEEEEEEEEESSCTTSTTCCEEEEEEEEETTTCBEEEEEE
T ss_pred HhcCCCccCCCccceeEEEECCcEEEEeCCCHHHHHHcCCceEEEEEecCCcccccCCCceEEEEEEEECCCCEEEEEEE
Confidence 99987655543 345677788888889997642 11 1111110 12345888888 4799999999
Q ss_pred ecCc
Q psy2951 964 VGMD 967 (1466)
Q Consensus 964 ~g~~ 967 (1466)
+|..
T Consensus 429 vg~~ 432 (480)
T 3cgb_A 429 IGEE 432 (480)
T ss_dssp EESS
T ss_pred ECCc
Confidence 9987
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-37 Score=375.00 Aligned_cols=365 Identities=22% Similarity=0.326 Sum_probs=291.8
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcc---cCcccccccCHhHhhhCCcEEEEceEEE
Q psy2951 596 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD---IKADSILLRTEEFYKDNDIHVIKGKKII 672 (1466)
Q Consensus 596 ~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~gv~~~~~~~v~ 672 (1466)
+||+|||||+||++||..|++++...+|+++|+++..+|..+.+..... ...+++..+..+++++.|++++.++.+.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~ 80 (447)
T 1nhp_A 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEIT 80 (447)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcccccchhhhcCccCCHHHhhcCCHHHHHHCCCEEEECCEEE
Confidence 4899999999999999999998444459999998877665544332221 2345566667788888999999999998
Q ss_pred EeccccccEEEccC---CC--EEecCEEEEcCCCCCCcCCCCCCCC--cEEEecCHHHHHhhcccCC--CCCcEEEECCC
Q psy2951 673 SDSELNEKKIKLQD---GT--SIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHIT--PESNVVVIGSS 743 (1466)
Q Consensus 673 ~i~~~~~~~v~~~~---~~--~~~~d~lviAtG~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~--~~~~vvVvG~G 743 (1466)
.+ +...+.+.+.+ |+ ++.||+||||||++|+.|++| |.+ ++++.++.+++..+.+.+. .+++++|||+|
T Consensus 81 ~i-~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~i~-G~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvIiG~G 158 (447)
T 1nhp_A 81 AI-QPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDIP-GKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSG 158 (447)
T ss_dssp EE-ETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCST-TTTSBSEECCCHHHHHHHHHHHHTCTTCCEEEEECCS
T ss_pred EE-eCCCCEEEEEecCCCceEEEeCCEEEEcCCCCcCCCCCC-CCCCCCeEEECCHHHHHHHHHHhhhcCCCeEEEECCC
Confidence 88 77777777653 54 489999999999999999998 875 6777778888777665554 68999999999
Q ss_pred hHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEec
Q psy2951 744 FIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPA 823 (1466)
Q Consensus 744 ~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~ 823 (1466)
++|+|+|..|++.|.+|+++++.+.++...+++++.+.+.+.+++.||++++++++++++.. +++..+.+ +++++++
T Consensus 159 ~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~--~~v~~v~~-~~~~i~~ 235 (447)
T 1nhp_A 159 YIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGD--GRVQKVVT-DKNAYDA 235 (447)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEECS--SBCCEEEE-SSCEEEC
T ss_pred HHHHHHHHHHHHCCCeEEEEecCcccccccCCHHHHHHHHHHHHhCCCEEEcCCEEEEEEcc--CcEEEEEE-CCCEEEC
Confidence 99999999999999999999999887755689999999999999999999999999999843 33434455 4578999
Q ss_pred CEEEEccccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHh
Q psy2951 824 DLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNM 903 (1466)
Q Consensus 824 D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i 903 (1466)
|.||+|+|++|++++++.. ++++++|+|.||++++|+.|+|||+|||+..+... .+.+..+++++.|..||+.+|.||
T Consensus 236 d~vi~a~G~~p~~~~~~~~-~~~~~~G~i~Vd~~~~t~~~~Iya~GD~~~~~~~~-~g~~~~~~~~~~A~~qg~~aa~~i 313 (447)
T 1nhp_A 236 DLVVVAVGVRPNTAWLKGT-LELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNP-ADTEVNIALATNARKQGRFAVKNL 313 (447)
T ss_dssp SEEEECSCEEESCGGGTTT-SCBCTTSCBCCCTTCBCSSTTEEECGGGSCEEEGG-GTEEECCCCHHHHHHHHHHHHHTS
T ss_pred CEEEECcCCCCChHHHHhh-hhhcCCCcEEECccccCCCCCEEEeeeEEEeeccC-CCCceechhHHHHHHHHHHHHHhh
Confidence 9999999999999988887 88888899999999999999999999999865543 344455678999999999999999
Q ss_pred ccCCCcCc-ccCeeeeeecCceeEEeeccCCC------C--ceeEec--c-----cccceEEEEEec--CCeEEEEEeec
Q psy2951 904 VEKKTSLS-TIPFFWTMLFGVGFRFAGYAAGH------T--QVDIVG--D-----LEALKFTAYYSN--ADKVLAILTVG 965 (1466)
Q Consensus 904 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~------~--~~~~~~--~-----~~~~~~~~~~~~--~~~i~g~~~~g 965 (1466)
++....+. ..+++|+.+++..+..+|+.+.. + ...... . .+...|.|++++ +++++|++++|
T Consensus 314 ~g~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g 393 (447)
T 1nhp_A 314 EEPVKPFPGVQGSSGLAVFDYKFASTGINEVMAQKLGKETKAVTVVEDYLMDFNPDKQKAWFKLVYDPETTQILGAQLMS 393 (447)
T ss_dssp SSCCCCCCCBCCCEEEEETTEEEEEEECCHHHHHHHTCCCEEEEEEEESSCTTCTTCCEEEEEEEECTTTCBEEEEEEEE
T ss_pred cCCCCCCCCccccEEEEECCeeeEEecCCHHHHHHcCCceEEEEEEcCCccccCCCCceEEEEEEEECCCCEEEEEEEEc
Confidence 98664443 34667888888888889876421 1 100101 0 123468888884 68999999999
Q ss_pred Cc
Q psy2951 966 MD 967 (1466)
Q Consensus 966 ~~ 967 (1466)
..
T Consensus 394 ~~ 395 (447)
T 1nhp_A 394 KA 395 (447)
T ss_dssp SS
T ss_pred Cc
Confidence 87
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-37 Score=367.99 Aligned_cols=357 Identities=18% Similarity=0.263 Sum_probs=285.6
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcc--cCcccccccC-HhHhhhCCcEEEEceEE
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD--IKADSILLRT-EEFYKDNDIHVIKGKKI 671 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~gv~~~~~~~v 671 (1466)
++||+|||||+||++||..|+++|+++.|++++++....|..+.++..+. ....++.... ..++++.+++++.+++|
T Consensus 4 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 83 (384)
T 2v3a_A 4 RAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKPMLSTGFSKNKDADGLAMAEPGAMAEQLNARILTHTRV 83 (384)
T ss_dssp CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSCCCEECGGGGGGTTTTTCCHHHHEEECHHHHHHHTTCEEECSCCC
T ss_pred CCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCCCCccCcccccHHHhCCCCHHHhhccCHHHHHHhCCcEEEeCCEE
Confidence 58999999999999999999999988889999998655555444443332 2333444433 45567889999998888
Q ss_pred EEeccccccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCC--cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHH
Q psy2951 672 ISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEA 749 (1466)
Q Consensus 672 ~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~ 749 (1466)
..+ +...+++.+.+ .++.||+||||||++|..|+++ |.+ .+++.+++.++..+...+..+++++|||+|++|+|+
T Consensus 84 ~~i-~~~~~~v~~~~-~~~~~d~lviAtG~~p~~p~i~-g~~~~~v~~~~~~~~~~~~~~~~~~~~~v~ViGgG~~g~e~ 160 (384)
T 2v3a_A 84 TGI-DPGHQRIWIGE-EEVRYRDLVLAWGAEPIRVPVE-GDAQDALYPINDLEDYARFRQAAAGKRRVLLLGAGLIGCEF 160 (384)
T ss_dssp CEE-EGGGTEEEETT-EEEECSEEEECCCEEECCCCCB-STTTTCEEECSSHHHHHHHHHHHTTCCEEEEECCSHHHHHH
T ss_pred EEE-ECCCCEEEECC-cEEECCEEEEeCCCCcCCCCCC-CcCcCCEEEECCHHHHHHHHHhhccCCeEEEECCCHHHHHH
Confidence 888 77778888754 5799999999999999999998 765 688899999888776666679999999999999999
Q ss_pred HHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEc
Q psy2951 750 AAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVG 829 (1466)
Q Consensus 750 A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a 829 (1466)
|..|++.|.+|+++++.+.++...+++++.+.+.+.+++.||++++++++++++..++ ...+.+++|+++++|.||+|
T Consensus 161 A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~--~~~v~~~~g~~i~~d~vv~a 238 (384)
T 2v3a_A 161 ANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGE--GLEAHLSDGEVIPCDLVVSA 238 (384)
T ss_dssp HHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHTTTCEEEESCCEEEEEEETT--EEEEEETTSCEEEESEEEEC
T ss_pred HHHHHhCCCeEEEEecCcchhhcccCHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCC--EEEEEECCCCEEECCEEEEC
Confidence 9999999999999999988776556899999999999999999999999999984322 34677888999999999999
Q ss_pred cccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCCc
Q psy2951 830 IGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS 909 (1466)
Q Consensus 830 ~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~~ 909 (1466)
+|++|++++++.+|++++ +| |.||+++||+.|+|||+|||+..+... .+++..|..||+.+|+||+|...+
T Consensus 239 ~G~~p~~~l~~~~g~~~~-~g-i~vd~~~~t~~~~IyA~GD~~~~~~~~-------~~~~~~a~~~g~~~a~~i~g~~~~ 309 (384)
T 2v3a_A 239 VGLRPRTELAFAAGLAVN-RG-IVVDRSLRTSHANIYALGDCAEVDGLN-------LLYVMPLMACARALAQTLAGNPSQ 309 (384)
T ss_dssp SCEEECCHHHHHTTCCBS-SS-EEECTTCBCSSTTEEECGGGEEETTBC-------CCSHHHHHHHHHHHHHHHTTCCCC
T ss_pred cCCCcCHHHHHHCCCCCC-CC-EEECCCCCCCCCCEEEeeeeeeECCCC-------cchHHHHHHHHHHHHHHhcCCCcc
Confidence 999999988898999887 57 999999999999999999999754321 246778999999999999987654
Q ss_pred C--cccCeeeeeecCceeEEeeccCCC-CceeEecccccceEEEEEe-cCCeEEEEEeecCch
Q psy2951 910 L--STIPFFWTMLFGVGFRFAGYAAGH-TQVDIVGDLEALKFTAYYS-NADKVLAILTVGMDP 968 (1466)
Q Consensus 910 ~--~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~i~g~~~~g~~~ 968 (1466)
+ ..+|+++. ..+.++...|..... .+....+ ++.+|.+++. ++++++|++++|...
T Consensus 310 ~~~~~~p~~~~-~~~~~~~~~g~~~~~~~~~~~~~--~~~g~~~~~~~~~~~i~G~~~~g~~a 369 (384)
T 2v3a_A 310 VAYGPMPVTVK-TPACPLVVSPPPRGMDGQWLVEG--SGTDLKVLCRDTAGRVIGYALTGAAV 369 (384)
T ss_dssp CCCCCCCEEEC-CTTSCEEEECCCTTCCCEEEEEE--ETTEEEEEEECTTSCEEEEEEEGGGG
T ss_pred CCCCCcceEEE-ECCeeEEEecCCCCCCceEEEEe--cCCcEEEEEEccCCEEEEEEEECcch
Confidence 4 45665321 134567777765432 2233333 3446888877 489999999999874
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-37 Score=386.86 Aligned_cols=369 Identities=20% Similarity=0.305 Sum_probs=297.6
Q ss_pred CCCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcc---cCccc-ccccCHhHhhhCCcEEE
Q psy2951 591 SSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD---IKADS-ILLRTEEFYKDNDIHVI 666 (1466)
Q Consensus 591 ~~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~gv~~~ 666 (1466)
+...+++|+|||||+|||+||..|++++...+|+++|+++.++|..+.+...+. ..... +..+...+.++.+++++
T Consensus 32 ~~~~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~~~~lp~~~~g~~~~~~~~~~~~~~~~~~~~gi~v~ 111 (588)
T 3ics_A 32 DRWGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCGLPYYIGGVITERQKLLVQTVERMSKRFNLDIR 111 (588)
T ss_dssp --CCCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTTSSCCGGGGBSSCHHHHHHHTTCEEE
T ss_pred CcccCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccccCCCCchhhcCcCCChHHhhccCHHHHHHhcCcEEE
Confidence 445578999999999999999999999555569999999988887766554443 12333 33444455568899999
Q ss_pred EceEEEEeccccccEEEcc---CCC--EEecCEEEEcCCCCCCcCCCCCCC-C--cEEEecCHHHHHhhcccC--CCCCc
Q psy2951 667 KGKKIISDSELNEKKIKLQ---DGT--SIDFTKIYLATGSSPRTISQADGV-N--KVFYLRTVEDANNIAPHI--TPESN 736 (1466)
Q Consensus 667 ~~~~v~~i~~~~~~~v~~~---~~~--~~~~d~lviAtG~~~~~~~~~~g~-~--~~~~~~~~~~~~~~~~~~--~~~~~ 736 (1466)
++++|+.+ +...+.+.+. ++. ++.||+||||||++|+.|+++ |. + .++..++..++..+...+ ..+++
T Consensus 112 ~~~~V~~i-d~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~i~-G~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~ 189 (588)
T 3ics_A 112 VLSEVVKI-NKEEKTITIKNVTTNETYNEAYDVLILSPGAKPIVPSIP-GIEEAKALFTLRNVPDTDRIKAYIDEKKPRH 189 (588)
T ss_dssp CSEEEEEE-ETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCT-TTTTCTTEEECSSHHHHHHHHHHHHHHCCSE
T ss_pred ECCEEEEE-ECCCCEEEEeecCCCCEEEEeCCEEEECCCCCCCCCCCC-CcccCCCeEEeCCHHHHHHHHHHHhhcCCCe
Confidence 99999999 8877777764 455 789999999999999999999 87 3 788888888887665433 24899
Q ss_pred EEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECC
Q psy2951 737 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLD 816 (1466)
Q Consensus 737 vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~ 816 (1466)
++|||+|++|+|+|..|++.|.+|+++++.+.++. .+++++.+.+.+.+++.||++++++++++++...+ .+.+.
T Consensus 190 vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~----~v~~~ 264 (588)
T 3ics_A 190 ATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMP-PIDYEMAAYVHEHMKNHDVELVFEDGVDALEENGA----VVRLK 264 (588)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT-TSCHHHHHHHHHHHHHTTCEEECSCCEEEEEGGGT----EEEET
T ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEecCCcccc-cCCHHHHHHHHHHHHHcCCEEEECCeEEEEecCCC----EEEEC
Confidence 99999999999999999999999999999987774 58999999999999999999999999999984322 46778
Q ss_pred CCcEEecCEEEEccccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHH
Q psy2951 817 NGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHG 896 (1466)
Q Consensus 817 ~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g 896 (1466)
+|+++++|.||+|+|++|++++++.+|++++++|+|.||++++|+.|+|||+|||+..+... +|.+..+++++.|..||
T Consensus 265 ~g~~i~~D~Vi~a~G~~p~~~~l~~~g~~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~-~g~~~~~~~~~~A~~~g 343 (588)
T 3ics_A 265 SGSVIQTDMLILAIGVQPESSLAKGAGLALGVRGTIKVNEKFQTSDPHIYAIGDAIEVKDFV-TETETMIPLAWPANRQG 343 (588)
T ss_dssp TSCEEECSEEEECSCEEECCHHHHHTTCCBCGGGCBCCCTTSBCSSTTEEECGGGBCEEBTT-TCCEECCCCHHHHHHHH
T ss_pred CCCEEEcCEEEEccCCCCChHHHHhcCceEcCCCCEEECCccccCCCCEEEeeeeeeccccc-CCcccccccHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999876654 45566678899999999
Q ss_pred HHHHHHhcc-CCCcCc-ccCeeeeeecCceeEEeeccCC------CC--ceeEe--c-----ccccceEEEEEe--cCCe
Q psy2951 897 RIAALNMVE-KKTSLS-TIPFFWTMLFGVGFRFAGYAAG------HT--QVDIV--G-----DLEALKFTAYYS--NADK 957 (1466)
Q Consensus 897 ~~aA~~i~~-~~~~~~-~~~~~~~~~~~~~~~~~g~~~~------~~--~~~~~--~-----~~~~~~~~~~~~--~~~~ 957 (1466)
+++|+||++ ....+. .+|..+..+|+..+..+|+++. .+ ..... . .-++..|+|+++ ++++
T Consensus 344 ~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~~~~~~ 423 (588)
T 3ics_A 344 RMLADIIHGHTDSLYKGTLGTSVAKVFDLTVATTGLNEKILKRLNIPYEVVHVQANSHAGYYPNATPVLIKLIFNKDSGK 423 (588)
T ss_dssp HHHHHHHTTCCSSCCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCCEEEEEEEESSCTTSTTCCEEEEEEEECTTTCB
T ss_pred HHHHHHhcCCCccccCCcccceEEEECCeEEEEecCCHHHHHHcCCCeEEEEEecCCccccCCCCceEEEEEEEECCCCe
Confidence 999999998 655554 3454555578888888998752 11 11110 0 012456899998 5799
Q ss_pred EEEEEeecCc
Q psy2951 958 VLAILTVGMD 967 (1466)
Q Consensus 958 i~g~~~~g~~ 967 (1466)
++|++++|.+
T Consensus 424 ilG~~~~g~~ 433 (588)
T 3ics_A 424 IYGAQTLGRD 433 (588)
T ss_dssp EEEEEEEESS
T ss_pred EEEEEEEcCC
Confidence 9999999975
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-37 Score=376.61 Aligned_cols=387 Identities=19% Similarity=0.212 Sum_probs=278.9
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCC---C-Cccch----------------hccc-------Cc
Q psy2951 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD---R-VKLSK----------------QLDI-------KA 95 (1466)
Q Consensus 43 ~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~---~-~~~~~----------------~~~~-------~~ 95 (1466)
++||+|||||+||++||..|++.|.++.|++..+ ..... . +..++ .... ..
T Consensus 6 ~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~--~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi~~~~~~~~~ 83 (482)
T 1ojt_A 6 EYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYK--TLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPELDI 83 (482)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS--CSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCCH
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC--CCCCceeeecccchHHHHHHHHHHHHHHHHHhCCcccCCCccCH
Confidence 4799999999999999999999999887765422 21100 0 00000 0000 00
Q ss_pred cccc-----------ccChhhhhcCCeEEEeCceEEEeccccccEEEecCC------------cEEecCEEEEccCCCCC
Q psy2951 96 DSIL-----------LRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDG------------TSIDFTKIYLATGSSPR 152 (1466)
Q Consensus 96 ~~~~-----------~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~------------~~~~~d~lviAtG~~~~ 152 (1466)
..+. ..+..++++.+++++.++.+.. +....++...++ .++.||+||+|||++|.
T Consensus 84 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~--~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtGs~p~ 161 (482)
T 1ojt_A 84 DMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFL--DPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVT 161 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEE--ETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEEc--cCCEEEEEecCCcccccccccCcceEEEcCEEEECCCCCCC
Confidence 1111 1123456678999999987653 223333433344 57999999999999988
Q ss_pred CCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHH
Q psy2951 153 TISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITK 232 (1466)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~ 232 (1466)
.++.++....+ .+..+...+.. .+++++|||||++|+|+|..|++.|.+||++++.+.+++ .+++++.+.+.+
T Consensus 162 ~~~~i~~~~~v---~~~~~~~~~~~---~~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~-~~~~~~~~~l~~ 234 (482)
T 1ojt_A 162 KLPFIPEDPRI---IDSSGALALKE---VPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQ-GADRDLVKVWQK 234 (482)
T ss_dssp CCSSCCCCTTE---ECHHHHTTCCC---CCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSST-TSCHHHHHHHHH
T ss_pred CCCCCCccCcE---EcHHHHhcccc---cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccc-ccCHHHHHHHHH
Confidence 76644432222 35666655442 368999999999999999999999999999999988774 688999999999
Q ss_pred HHHhCCcEEEcCceEEEEEecCCCCeEEEEcCC----CcEEeccEEEEeeccccCccc--cccCCceecCCccEEECCCC
Q psy2951 233 LFESKGVKFVMKANVSSFEKNEKNDVTAANLDN----GTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYL 306 (1466)
Q Consensus 233 ~l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~~~----g~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~ 306 (1466)
.++++||+++++++|++++.+++ ...+.+.+ |+++++|.||+|+|++||+++ ++..|++++++|+|.||+++
T Consensus 235 ~l~~~gV~i~~~~~v~~i~~~~~--~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~ 312 (482)
T 1ojt_A 235 QNEYRFDNIMVNTKTVAVEPKED--GVYVTFEGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVDKQM 312 (482)
T ss_dssp HHGGGEEEEECSCEEEEEEEETT--EEEEEEESSSCCSSCEEESCEEECCCEEECGGGTTGGGTTCCCCTTSCCCCCTTS
T ss_pred HHHhcCCEEEECCEEEEEEEcCC--eEEEEEeccCCCceEEEcCEEEECcCCCcCCCCCChhhcCceeCCCCCEeeCCCc
Confidence 99999999999999999986532 23455555 678999999999999999987 68889999888999999999
Q ss_pred CcCCCCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCCCC--CCCCCcccccccceeeEEEEeecCC--
Q psy2951 307 ETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS--LSTIPFFWTMLFGVGFRFAGYAAGH-- 382 (1466)
Q Consensus 307 ~t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~--~~~~p~~~s~~~~~~~~~~G~~~~~-- 382 (1466)
||+.|+|||+|||+..+ ..+..|..||+.+|.||++.... +..+|+. ...+..+..+|.+...
T Consensus 313 ~t~~~~IyA~GD~~~~~-----------~l~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~--~~~~~~~a~vG~te~~a~ 379 (482)
T 1ojt_A 313 RTNVPHIYAIGDIVGQP-----------MLAHKAVHEGHVAAENCAGHKAYFDARVIPGV--AYTSPEVAWVGETELSAK 379 (482)
T ss_dssp BCSSTTEEECGGGTCSS-----------CCHHHHHHHHHHHHHHHTTCCCCCCCCCCCEE--ECSSSCEEEEECCHHHHH
T ss_pred ccCCCCEEEEEcccCCC-----------ccHHHHHHHHHHHHHHHcCCCccCCCCCCCEE--EEcCCCeEEEeCCHHHHH
Confidence 99999999999998753 34668999999999999986543 4455632 2222335555654311
Q ss_pred ---ceEEEec-----------ccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcc
Q psy2951 383 ---TQVDIVG-----------DLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRC 439 (1466)
Q Consensus 383 ---~~~~~~g-----------~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~ 439 (1466)
.++.... .-+..+|.+++.+ +++|+|++++|. ++++..++ .+|+++.+. ++++|||
T Consensus 380 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~-~ai~~~~~~~~l~~~~~~~Pt 458 (482)
T 1ojt_A 380 ASARKITKANFPWAASGRAIANGCDKPFTKLIFDAETGRIIGGGIVGPNGGDMIGEVC-LAIEMGCDAADIGKTIHPHPT 458 (482)
T ss_dssp HHTCCEEEEEEEGGGCHHHHHTTCCSCEEEEEEETTTCBEEEEEEESTTHHHHHHHHH-HHHHTTCBHHHHHTSCCCSSS
T ss_pred hcCCCEEEEEEEcCcchHHhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhcCccCCCC
Confidence 1111110 1135689999884 699999999998 35666666 999999886 7999999
Q ss_pred cchhh--cccCCCCccccC
Q psy2951 440 LGVVL--GKLDYHGTITIS 456 (1466)
Q Consensus 440 ~~e~~--~~~~~~~~~~~~ 456 (1466)
++|.+ ++....++..|.
T Consensus 459 ~~e~~~~a~~~~~~~~~~~ 477 (482)
T 1ojt_A 459 LGESIGMAAEVALGTCTDL 477 (482)
T ss_dssp STTHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHHHHHHhcccccc
Confidence 99998 433333444443
|
| >4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=372.64 Aligned_cols=379 Identities=18% Similarity=0.245 Sum_probs=260.1
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCC------CCCCCC----CCccc-----------------hhcccCc
Q psy2951 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE------NFLPYD----RVKLS-----------------KQLDIKA 95 (1466)
Q Consensus 43 ~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~------~~~~~~----~~~~~-----------------~~~~~~~ 95 (1466)
.|||+||||||||++||.+++++|.+|.|+|..+. ..+... -+-.+ ..+....
T Consensus 42 dYDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~~~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~~~~~~~~~Gi~~ 121 (542)
T 4b1b_A 42 DYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYGWKF 121 (542)
T ss_dssp SEEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCCCTTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHHHHHTGGGGTEEE
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCCCcccccchHHHHHHHHHHHHHHHHHhhhHhcCccc
Confidence 48999999999999999999999999988764331 111100 00000 0011110
Q ss_pred -------ccc-----------cccChhhhhcCCeEEEeCceEEEeccccccEEEec----CCcEEecCEEEEccCCCCCC
Q psy2951 96 -------DSI-----------LLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQ----DGTSIDFTKIYLATGSSPRT 153 (1466)
Q Consensus 96 -------~~~-----------~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~----~~~~~~~d~lviAtG~~~~~ 153 (1466)
..+ .......+++.+|+++.+...+... ....+... +.+++++|++|||||++|+.
T Consensus 122 ~~~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~~i~G~a~f~~~--~~v~V~~~~~~~~~~~i~a~~iiIATGs~P~~ 199 (542)
T 4b1b_A 122 DNLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYINGLAKLKDK--NTVSYYLKGDLSKEETVTGKYILIATGCRPHI 199 (542)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEEEET--TEEEEEEC--CCCEEEEEEEEEEECCCEEECC
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEcCC--CcceEeecccCCceEEEeeeeEEeccCCCCCC
Confidence 111 1122344667899999998877643 22223222 33579999999999999987
Q ss_pred CCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHH
Q psy2951 154 ISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKL 233 (1466)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~ 233 (1466)
||.++...... -+.+++..+.. .+++++|||||++|+|+|..++++|.+||++++. ..+ +.+++++.+.+.+.
T Consensus 200 P~~~~~~~~~~--~ts~~~l~l~~---lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~-~~L-~~~D~ei~~~l~~~ 272 (542)
T 4b1b_A 200 PDDVEGAKELS--ITSDDIFSLKK---DPGKTLVVGASYVALECSGFLNSLGYDVTVAVRS-IVL-RGFDQQCAVKVKLY 272 (542)
T ss_dssp CSSSBTHHHHC--BCHHHHTTCSS---CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEESS-CSS-TTSCHHHHHHHHHH
T ss_pred CCcccCCCccc--cCchhhhcccc---CCceEEEECCCHHHHHHHHHHHhcCCeEEEeccc-ccc-cccchhHHHHHHHH
Confidence 76555433211 25666666553 3579999999999999999999999999999875 344 67899999999999
Q ss_pred HHhCCcEEEcCceEEEEEecCCCCeEEEEcCCCcEEeccEEEEeeccccCcccc--ccCCceecCCcc-EEECCCCCcCC
Q psy2951 234 FESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYL--DGKGVELNGQKA-VVVNEYLETNV 310 (1466)
Q Consensus 234 l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~l--~~~gl~~~~~g~-i~vd~~~~t~~ 310 (1466)
|++.||++++++.+++++..+ ....+.+.+++++.+|.|++|+|++||++.| +..++.++.+++ +.+|+++||+.
T Consensus 273 l~~~gi~~~~~~~v~~~~~~~--~~~~v~~~~~~~~~~D~vLvAvGR~Pnt~~L~le~~gv~~~~~~~~i~vd~~~~Ts~ 350 (542)
T 4b1b_A 273 MEEQGVMFKNGILPKKLTKMD--DKILVEFSDKTSELYDTVLYAIGRKGDIDGLNLESLNMNVNKSNNKIIADHLSCTNI 350 (542)
T ss_dssp HHHTTCEEEETCCEEEEEEET--TEEEEEETTSCEEEESEEEECSCEEESCGGGCGGGTTCCEETTTTEECCCTTSBCSS
T ss_pred HHhhcceeecceEEEEEEecC--CeEEEEEcCCCeEEEEEEEEcccccCCccccCcccceeeecccCceEeccccccccC
Confidence 999999999999999998764 2445777888899999999999999999864 667888887665 57899999999
Q ss_pred CCEEEecccccc-cCccCCCCcceeccHHHHHHHHHHHHHHhcCCCC---CCCCCC---cccccccceeeEE--------
Q psy2951 311 PGVYAGGDIAYA-PLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT---SLSTIP---FFWTMLFGVGFRF-------- 375 (1466)
Q Consensus 311 ~~iya~GD~~~~-~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~---~~~~~p---~~~s~~~~~~~~~-------- 375 (1466)
|+|||+|||++. |+ ....|..||+++++|+++... ++..+| |+.|+...+|+..
T Consensus 351 p~IyAiGDv~~~~p~-----------La~~A~~eg~~aa~~i~g~~~~~~d~~~iP~~vft~PeiA~VGlTE~eA~~~g~ 419 (542)
T 4b1b_A 351 PSIFAVGDVAENVPE-----------LAPVAIKAGEILARRLFKDSDEIMDYSYIPTSIYTPIEYGACGYSEEKAYELYG 419 (542)
T ss_dssp TTEEECTTSBTTCCC-----------CHHHHHHHHHHHHHHHHSCCCCCCCCSSCCEEECSSSCEEEEECCHHHHHHHHC
T ss_pred CCeEEeccccCCchh-----------HHHHHHHHHHHHHHHHhcCCCcccCCCCCceEEeCCCCeEEEeCCHHHHHHhCC
Confidence 999999999854 33 345799999999999997543 466777 4566655555310
Q ss_pred ---EEeecCCce---EE--------------EecccCCCeEEEEEE-c--CCEEEEEEEECC--CHHHHHHHHHHhcCCC
Q psy2951 376 ---AGYAAGHTQ---VD--------------IVGDLEALKFTAYYS-N--ADKVLAILTVGM--DPLAAQFAEQVLEFPY 430 (1466)
Q Consensus 376 ---~G~~~~~~~---~~--------------~~g~~~~~~~~~~~~-~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~ 430 (1466)
++.....+. .. +.-..+..+|.+++. + +++|+|++++|. +++++.++ .+|+++.
T Consensus 420 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vKli~~~~~t~~ILGa~ivG~~A~ElI~~~a-lAi~~~~ 498 (542)
T 4b1b_A 420 KSNVEVFLQEFNNLEISAVHRQKHIRAQKDEYDLDVSSTCLAKLVCLKNEDNRVIGFHYVGPNAGEVTQGMA-LALRLKV 498 (542)
T ss_dssp TTTEEEEEC-----------------------------CCCEEEEEETTTTTBEEEEEEESTTHHHHHHHHH-HHHHTCC
T ss_pred CCcEEEEEeeccchhhhhhhhhhhhhcccccccccCCCceEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHH-HHHHcCC
Confidence 000000000 00 000123568888875 3 489999999998 56777777 9999999
Q ss_pred cc-----ccccCcccchhh
Q psy2951 431 SS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 431 ~~-----~~~~~p~~~e~~ 444 (1466)
+. ++|+|||++|.+
T Consensus 499 t~~dl~~~i~~HPTlsE~l 517 (542)
T 4b1b_A 499 KKKDFDNCIGIHPTDAESF 517 (542)
T ss_dssp BHHHHHHC-----------
T ss_pred CHHHHhccCCcCCCHHHHH
Confidence 86 899999999998
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-36 Score=365.29 Aligned_cols=383 Identities=22% Similarity=0.264 Sum_probs=278.7
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCC---CC-ccchh----------------cc------cCcc
Q psy2951 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD---RV-KLSKQ----------------LD------IKAD 96 (1466)
Q Consensus 43 ~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~---~~-~~~~~----------------~~------~~~~ 96 (1466)
++||+||||||||++||..|++.|+++.|++.+ . .... .. ..++. +. .+..
T Consensus 6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~--~-~GG~~~~~g~iP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (464)
T 2eq6_A 6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAG--E-VGGVCLNVGCIPTKALLHAAETLHHLKVAEGFGLKAKPELDLK 82 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--C-TTHHHHHTSHHHHHHHHHHHHHHHHHHHHGGGTEECCCEECHH
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC--C-CCCCCCCcChHHHHHHHHHHHHHHHHHhHHhcCCCCCCCcCHH
Confidence 589999999999999999999999987776543 2 1100 00 00000 00 0111
Q ss_pred cccc-----------cChhhhhcCCeEEEeCceEEEeccccccEEEecCCcEEecCEEEEccCCCCCCCCCCCCCCcEEE
Q psy2951 97 SILL-----------RTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFY 165 (1466)
Q Consensus 97 ~~~~-----------~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~~~~~~~~ 165 (1466)
.+.. .+..++++.+++++.++.+..+ .+++.+. ++++.||+||+|||++|+.++.+++...++
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~----~~~v~v~-g~~~~~d~lViATGs~p~~p~gi~~~~~v~- 156 (464)
T 2eq6_A 83 KLGGWRDQVVKKLTGGVGTLLKGNGVELLRGFARLVG----PKEVEVG-GERYGAKSLILATGSEPLELKGFPFGEDVW- 156 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEE----TTEEEET-TEEEEEEEEEECCCEEECCBTTBCCSSSEE-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEcc----CCEEEEc-cEEEEeCEEEEcCCCCCCCCCCCCCCCcEE-
Confidence 1111 1234566789999999876532 3567776 678999999999999998766455433332
Q ss_pred ecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEEcCc
Q psy2951 166 LRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKA 245 (1466)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~ 245 (1466)
+..+...+... .+++++|||+|++|+|+|..|++.|.+|+++++.+.+++ .+++++.+.+.+.+++.||++++++
T Consensus 157 --~~~~~~~l~~~--~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~gV~i~~~~ 231 (464)
T 2eq6_A 157 --DSTRALKVEEG--LPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILP-QGDPETAALLRRALEKEGIRVRTKT 231 (464)
T ss_dssp --CHHHHTCGGGC--CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHTTCEEECSE
T ss_pred --cHHHHHhhhhh--cCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCcccc-ccCHHHHHHHHHHHHhcCCEEEcCC
Confidence 56666655432 357999999999999999999999999999999887664 6789999999999999999999999
Q ss_pred eEEEEEecCCCCeEEEEcC-C--Cc--EEeccEEEEeeccccCccc--cccCCceecCCccEEECCCCCcCCCCEEEecc
Q psy2951 246 NVSSFEKNEKNDVTAANLD-N--GT--TIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGD 318 (1466)
Q Consensus 246 ~v~~i~~~~~~~~~~v~~~-~--g~--~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD 318 (1466)
+|++++.++ +. ..+.+. + |+ ++++|.||+|+|++|++++ ++..|++++++|+|.||+++||+.|+|||+||
T Consensus 232 ~v~~i~~~~-~~-~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD 309 (464)
T 2eq6_A 232 KAVGYEKKK-DG-LHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDERGFIRVNARMETSVPGVYAIGD 309 (464)
T ss_dssp EEEEEEEET-TE-EEEEEEETTCCSCEEEEESEEEECSCEEESCTTSSHHHHTCCBCTTSCBCCCTTCBCSSTTEEECGG
T ss_pred EEEEEEEeC-CE-EEEEEeecCCCceeEEEcCEEEECCCcccCCCCCChhhcCceecCCCCEEECCCcccCCCCEEEEec
Confidence 999998653 22 335544 5 66 8999999999999999986 47778888888999999999999999999999
Q ss_pred cccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCCC--CCCCCCcccccccceeeEEEEeecCC-----ceEEEe---
Q psy2951 319 IAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT--SLSTIPFFWTMLFGVGFRFAGYAAGH-----TQVDIV--- 388 (1466)
Q Consensus 319 ~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~--~~~~~p~~~s~~~~~~~~~~G~~~~~-----~~~~~~--- 388 (1466)
|+..+ ..+..|..||+.+|.||++... .+. +|+. ...+..+..+|..... .++...
T Consensus 310 ~~~~~-----------~l~~~A~~~g~~aa~~i~g~~~~~~~~-~p~~--~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~ 375 (464)
T 2eq6_A 310 AARPP-----------LLAHKAMREGLIAAENAAGKDSAFDYQ-VPSV--VYTSPEWAGVGLTEEEAKRAGYKVKVGKFP 375 (464)
T ss_dssp GTCSS-----------CCHHHHHHHHHHHHHHHTTCCCCCCCC-CCEE--ECSSSEEEEEECCHHHHHHTTCCEEEEEEE
T ss_pred cCCCc-----------ccHHHHHHHHHHHHHHhcCCCcccCCC-CCeE--EECCCCEEEEeCCHHHHHhcCCCEEEEEEE
Confidence 98754 3456899999999999998654 344 5642 2223345566654321 111110
Q ss_pred --------cccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh--cccCC
Q psy2951 389 --------GDLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL--GKLDY 449 (1466)
Q Consensus 389 --------g~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~--~~~~~ 449 (1466)
-.-+..+|.+++.+ +++|+|++++|. ++++..++ .+|+.+.+. +++.|||++|.+ ++...
T Consensus 376 ~~~~~~~~~~~~~~g~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~-~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~ 454 (464)
T 2eq6_A 376 LAASGRALTLGGAEGMVKVVGDEETDLLLGVFIVGPQAGELIAEAA-LALEMGATLTDLALTVHPHPTLSESLMEAAEAF 454 (464)
T ss_dssp GGGCHHHHHTSCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHH-HHHHTTCBHHHHHHSCCCSSCTTHHHHHHHHHH
T ss_pred cCcchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhcCcCCCCChHHHHHHHHHHH
Confidence 01135689998887 589999999998 24556666 899999876 799999999998 33333
Q ss_pred CCccccC
Q psy2951 450 HGTITIS 456 (1466)
Q Consensus 450 ~~~~~~~ 456 (1466)
.++.+|.
T Consensus 455 ~~~~~~~ 461 (464)
T 2eq6_A 455 HKQAIHI 461 (464)
T ss_dssp TTCCSSS
T ss_pred hcCcccc
Confidence 3444443
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-36 Score=366.60 Aligned_cols=380 Identities=17% Similarity=0.236 Sum_probs=276.4
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCC-------CCC----------------CCCccc------h-hc
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENF-------LPY----------------DRVKLS------K-QL 91 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~-------~~~----------------~~~~~~------~-~~ 91 (1466)
.++||+|||||+||++||..|++.|.++.|++.+.-.. .|. ....+. . ..
T Consensus 10 ~~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~~~GG~~~n~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 89 (479)
T 2hqm_A 10 KHYDYLVIGGGSGGVASARRAASYGAKTLLVEAKALGGTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPLDKEHL 89 (479)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTSCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTBSTTSCCSGGGC
T ss_pred ccCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCCCcCCcCcccCcHHHHHHHHHHHHHHHHHhHHhcCcccccccccccC
Confidence 35899999999999999999999999988876432100 000 000000 0 00
Q ss_pred ccCccc-----------ccccChhhhhcCCeEEEeCceEEEeccccccEEEecCCc--EEecCEEEEccCCCCCCCCCCC
Q psy2951 92 DIKADS-----------ILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGT--SIDFTKIYLATGSSPRTISQAD 158 (1466)
Q Consensus 92 ~~~~~~-----------~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~--~~~~d~lviAtG~~~~~~~~~~ 158 (1466)
..+... +...+...+++.+++++.++... .+....++.+.++. ++.||+||+|||++|..++.++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~--i~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~~i~ 167 (479)
T 2hqm_A 90 TFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGWARF--NKDGNVEVQKRDNTTEVYSANHILVATGGKAIFPENIP 167 (479)
T ss_dssp CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEE--CTTSCEEEEESSSCCEEEEEEEEEECCCEEECCCTTST
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE--eeCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCCCCCCC
Confidence 000000 11122344567899999987443 34445566666776 7999999999999988652455
Q ss_pred CCCcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCC
Q psy2951 159 GVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKG 238 (1466)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~G 238 (1466)
+.+.+ .+.++...+. ..+++++|||+|++|+|+|..|++.|.+|+++++.+.++ +.+++++.+.+.+.+++.|
T Consensus 168 g~~~~---~~~~~~~~l~---~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l-~~~d~~~~~~l~~~l~~~G 240 (479)
T 2hqm_A 168 GFELG---TDSDGFFRLE---EQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVL-RKFDECIQNTITDHYVKEG 240 (479)
T ss_dssp TGGGS---BCHHHHHHCS---SCCSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSC-TTSCHHHHHHHHHHHHHHT
T ss_pred Ccccc---cchHHHhccc---ccCCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccc-cccCHHHHHHHHHHHHhCC
Confidence 55432 2445555543 246899999999999999999999999999999998776 4688999999999999999
Q ss_pred cEEEcCceEEEEEecCCCCeEEEEcCCC-cEEeccEEEEeeccccCccc-cccCCceecCCccEEECCCCCcCCCCEEEe
Q psy2951 239 VKFVMKANVSSFEKNEKNDVTAANLDNG-TTIPADLVIVGIGTVLNTNY-LDGKGVELNGQKAVVVNEYLETNVPGVYAG 316 (1466)
Q Consensus 239 V~i~~~~~v~~i~~~~~~~~~~v~~~~g-~~i~~D~Vi~a~G~~p~~~~-l~~~gl~~~~~g~i~vd~~~~t~~~~iya~ 316 (1466)
|+++++++|++++.++++....+.+++| +++++|.||+|+|++||+.+ ++..|++++++|+|.||++++|+.|+|||+
T Consensus 241 v~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~IyA~ 320 (479)
T 2hqm_A 241 INVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHLGMGSENVGIKLNSHDQIIADEYQNTNVPNIYSL 320 (479)
T ss_dssp CEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEECCCSSGGGGTCCBCTTSCBCCCTTCBCSSTTEEEC
T ss_pred eEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCccccChhhcCceECCCCCEeECCCCccCCCCEEEE
Confidence 9999999999998754333456777888 78999999999999999977 788899999889999999999999999999
Q ss_pred cccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCC------CCCCCCCcccccccceeeEEEEeecCC-------c
Q psy2951 317 GDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK------TSLSTIPFFWTMLFGVGFRFAGYAAGH-------T 383 (1466)
Q Consensus 317 GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~------~~~~~~p~~~s~~~~~~~~~~G~~~~~-------~ 383 (1466)
|||++.+ ..+..|..||+.+|.||++.. .++..+|+. -.....+..+|..... .
T Consensus 321 GD~~~~~-----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~p~~--~~~~~~~~~vGl~e~~a~~~~~~~ 387 (479)
T 2hqm_A 321 GDVVGKV-----------ELTPVAIAAGRKLSNRLFGPEKFRNDKLDYENVPSV--IFSHPEAGSIGISEKEAIEKYGKE 387 (479)
T ss_dssp GGGTTSS-----------CCHHHHHHHHHHHHHHHHSCGGGTTCCCCCTTCCEE--ECCSSCEEEEECCHHHHHHHHCGG
T ss_pred EecCCCc-----------ccHHHHHHHHHHHHHHhcCCCccCcccCCCCCCCeE--EECCCCeEEEeCCHHHHHhcCCCC
Confidence 9997643 456789999999999999754 234455632 1112234455543211 1
Q ss_pred eEEEe-------c----ccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchh
Q psy2951 384 QVDIV-------G----DLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVV 443 (1466)
Q Consensus 384 ~~~~~-------g----~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~ 443 (1466)
.+... + ..+..+|.+++.+ +++|+|++++|. +++++.++ .+|+++.+. ++++|||++|.
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~~~i~~~~-~ai~~~~t~~~l~~~~~~hPt~~e~ 466 (479)
T 2hqm_A 388 NIKVYNSKFTAMYYAMLSEKSPTRYKIVCAGPNEKVVGLHIVGDSSAEILQGFG-VAIKMGATKADFDNCVAIHPTSAEE 466 (479)
T ss_dssp GEEEEEEEECCGGGGGCSSCCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHH-HHHHTTCBHHHHHTSCCCSSCSGGG
T ss_pred cEEEEEEeccHHHHHhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhhCcCCCCChHHH
Confidence 12111 1 1135689998886 489999999998 44566666 889999876 79999999998
Q ss_pred h
Q psy2951 444 L 444 (1466)
Q Consensus 444 ~ 444 (1466)
+
T Consensus 467 ~ 467 (479)
T 2hqm_A 467 L 467 (479)
T ss_dssp G
T ss_pred H
Confidence 8
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-36 Score=369.33 Aligned_cols=380 Identities=19% Similarity=0.228 Sum_probs=276.6
Q ss_pred CCCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCC--------------------------CCCCCCccchhcc
Q psy2951 39 SSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENF--------------------------LPYDRVKLSKQLD 92 (1466)
Q Consensus 39 ~~~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~--------------------------~~~~~~~~~~~~~ 92 (1466)
+.+.++||+||||||||++||..|++.|+++.|++.+.-.. ..|..... ...
T Consensus 16 ~~~~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~~~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~~~--~~~ 93 (478)
T 3dk9_A 16 GAVASYDYLVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSC--EGK 93 (478)
T ss_dssp -CEEECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSCCC--CCC
T ss_pred ccCCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCccchHHHHHHHHHHHHHHHHHhcCccCC--CCc
Confidence 33456899999999999999999999999988877321000 00000000 000
Q ss_pred cCc-----------ccccccChhhhhcCCeEEEeCceEEEeccccccEEEecCCcEEecCEEEEccCCCCCCCC--CCCC
Q psy2951 93 IKA-----------DSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTIS--QADG 159 (1466)
Q Consensus 93 ~~~-----------~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~--~~~~ 159 (1466)
... ..+...+...++..+++++.++.... +....++. .++.++.||+||||||++|..++ .+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~--~~~~~~v~-~~g~~~~~d~lviAtG~~p~~p~~~~i~G 170 (478)
T 3dk9_A 94 FNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFT--SDPKPTIE-VSGKKYTAPHILIATGGMPSTPHESQIPG 170 (478)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEC--SCSSCEEE-ETTEEEECSCEEECCCEEECCCCTTTSTT
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEe--eCCeEEEE-ECCEEEEeeEEEEccCCCCCCCCcCCCCC
Confidence 000 11112233455677999999986654 33445666 46678999999999999988652 4555
Q ss_pred CCcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCc
Q psy2951 160 VNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGV 239 (1466)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV 239 (1466)
.+. ..+.++...+. ..+++++|||+|++|+|+|..+++.|.+|+++++.+.++ +.+++++.+.+.+.+++.||
T Consensus 171 ~~~---~~~~~~~~~~~---~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-~~~d~~~~~~~~~~l~~~gv 243 (478)
T 3dk9_A 171 ASL---GITSDGFFQLE---ELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAGV 243 (478)
T ss_dssp GGG---SBCHHHHTTCC---SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC-TTSCHHHHHHHHHHHHHTTC
T ss_pred Cce---eEchHHhhchh---hcCccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccc-cccCHHHHHHHHHHHHHCCC
Confidence 542 22444444433 236899999999999999999999999999999988776 67899999999999999999
Q ss_pred EEEcCceEEEEEecCCCCeEEEEcCC-------CcEEeccEEEEeeccccCcc-c-cccCCceecCCccEEECCCCCcCC
Q psy2951 240 KFVMKANVSSFEKNEKNDVTAANLDN-------GTTIPADLVIVGIGTVLNTN-Y-LDGKGVELNGQKAVVVNEYLETNV 310 (1466)
Q Consensus 240 ~i~~~~~v~~i~~~~~~~~~~v~~~~-------g~~i~~D~Vi~a~G~~p~~~-~-l~~~gl~~~~~g~i~vd~~~~t~~ 310 (1466)
++++++.|++++.++++....+.+.+ |+++++|.||+|+|++|+++ + ++..|++++++|+|.||++++|+.
T Consensus 244 ~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~ 323 (478)
T 3dk9_A 244 EVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNV 323 (478)
T ss_dssp EEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTCCBCCCTTCBCSS
T ss_pred EEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCCCCCCchhcCCeeCCCCCEeeCCCcccCC
Confidence 99999999999875444223455544 26799999999999999998 4 678899999999999999999999
Q ss_pred CCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCC----CCCCCCCcccccccceeeEEEEeecCC----
Q psy2951 311 PGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK----TSLSTIPFFWTMLFGVGFRFAGYAAGH---- 382 (1466)
Q Consensus 311 ~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~----~~~~~~p~~~s~~~~~~~~~~G~~~~~---- 382 (1466)
|+|||+|||++.+ ..+..|..||+.+|.||++.. ..+..+|+. ......+..+|.+...
T Consensus 324 ~~IyA~GD~~~~~-----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~--~~~~p~~a~vGlte~~a~~~ 390 (478)
T 3dk9_A 324 KGIYAVGDVCGKA-----------LLTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTV--VFSHPPIGTVGLTEDEAIHK 390 (478)
T ss_dssp TTEEECGGGGCSS-----------CCHHHHHHHHHHHHHHHHSCCTTCCCCCTTCCEE--ECCSSCEEEEECCHHHHHHH
T ss_pred CCEEEEEecCCCC-----------ccHhHHHHHHHHHHHHHcCCCCcccCCCCCCCeE--EECCCceEEeeCCHHHHHhh
Confidence 9999999998654 346689999999999999762 345566632 1122334555554311
Q ss_pred ---ceE-----EEec------ccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcc
Q psy2951 383 ---TQV-----DIVG------DLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRC 439 (1466)
Q Consensus 383 ---~~~-----~~~g------~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~ 439 (1466)
..+ .+.. .-+..+|.+++.+ +++|+|++++|. +++++.++ .+|+++.+. ++|+|||
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~-~ai~~~~t~~~l~~~~~~hPt 469 (478)
T 3dk9_A 391 YGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQGLGCDEMLQGFA-VAVKMGATKADFDNTVAIHPT 469 (478)
T ss_dssp HCGGGEEEEEEEECCGGGGGCSSCCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHH-HHHHTTCBHHHHHTSCCCSSS
T ss_pred CCCccEEEEEeecCcchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhhcccCCCC
Confidence 111 1111 1135789998876 489999999998 55677776 999999886 8999999
Q ss_pred cchhh
Q psy2951 440 LGVVL 444 (1466)
Q Consensus 440 ~~e~~ 444 (1466)
++|.+
T Consensus 470 ~~e~~ 474 (478)
T 3dk9_A 470 SSEEL 474 (478)
T ss_dssp SGGGG
T ss_pred hHHHH
Confidence 99987
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-36 Score=368.07 Aligned_cols=376 Identities=22% Similarity=0.265 Sum_probs=275.2
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCC----CCccchh-----------------ccc--------
Q psy2951 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD----RVKLSKQ-----------------LDI-------- 93 (1466)
Q Consensus 43 ~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~----~~~~~~~-----------------~~~-------- 93 (1466)
++||+|||||+||++||..|++.|+++.|++.++ ..... .+..++. ...
T Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~--~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~ 79 (468)
T 2qae_A 2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRG--ALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGEGVTM 79 (468)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS--SSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECGGGCEE
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC--CcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccCCCCcc
Confidence 4799999999999999999999999887765432 22100 0000000 000
Q ss_pred Ccccc-----------cccChhhhhcCCeEEEeCceEEEeccccccEEEecCC--cEEecCEEEEccCCCCCCCCCCCCC
Q psy2951 94 KADSI-----------LLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQADGV 160 (1466)
Q Consensus 94 ~~~~~-----------~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~--~~~~~d~lviAtG~~~~~~~~~~~~ 160 (1466)
+...+ ...+..++++.+++++.++.+.. +....++.+.++ .++.||+||+|||++|..++ +++.
T Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i--~~~~~~v~~~~G~~~~~~~d~lviAtG~~p~~p~-~~g~ 156 (468)
T 2qae_A 80 DSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGSFE--TAHSIRVNGLDGKQEMLETKKTIIATGSEPTELP-FLPF 156 (468)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEE--ETTEEEEEETTSCEEEEEEEEEEECCCEEECCBT-TBCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEe--eCCEEEEEecCCceEEEEcCEEEECCCCCcCCCC-CCCC
Confidence 00111 11123456677999999987653 444556666677 67999999999999988655 3333
Q ss_pred CcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHH-HhCCc
Q psy2951 161 NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLF-ESKGV 239 (1466)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l-~~~GV 239 (1466)
+.. .+.+..+...+.. .+++++|||+|++|+|+|..+++.|.+|+++++.+.+++ .+++++.+.+.+.+ +++||
T Consensus 157 ~~~-~v~t~~~~~~~~~---~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~~d~~~~~~l~~~l~~~~gv 231 (468)
T 2qae_A 157 DEK-VVLSSTGALALPR---VPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAP-TLDEDVTNALVGALAKNEKM 231 (468)
T ss_dssp CSS-SEECHHHHHTCSS---CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHHTCC
T ss_pred CcC-ceechHHHhhccc---CCceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCcccc-cCCHHHHHHHHHHHhhcCCc
Confidence 221 1235666665542 468999999999999999999999999999999987764 68899999999999 99999
Q ss_pred EEEcCceEEEEEecCCCCeEEEEcC--CC--cEEeccEEEEeeccccCccc--cccCCceecCCccEEECCCCCcCCCCE
Q psy2951 240 KFVMKANVSSFEKNEKNDVTAANLD--NG--TTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGV 313 (1466)
Q Consensus 240 ~i~~~~~v~~i~~~~~~~~~~v~~~--~g--~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~~~i 313 (1466)
+++++++|++++.+++ .+ .+.+. +| +++++|.||+|+|++||+++ ++..|++++++|+|.||+++||+.|+|
T Consensus 232 ~i~~~~~v~~i~~~~~-~~-~v~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~I 309 (468)
T 2qae_A 232 KFMTSTKVVGGTNNGD-SV-SLEVEGKNGKRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHFETSIPDV 309 (468)
T ss_dssp EEECSCEEEEEEECSS-SE-EEEEECC---EEEEEESEEEECSCEEECCTTSCHHHHTCCBCTTSCBCCCTTSBCSSTTE
T ss_pred EEEeCCEEEEEEEcCC-eE-EEEEEcCCCceEEEECCEEEECCCcccCCCCCCchhcCCccCCCCCEeECCCcccCCCCE
Confidence 9999999999987542 22 34443 56 67999999999999999988 677889998889999999999999999
Q ss_pred EEeccccc-ccCccCCCCcceeccHHHHHHHHHHHHHHhcCCCCC--CCCCCcccccccceeeEEEEeecCC-----ceE
Q psy2951 314 YAGGDIAY-APLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS--LSTIPFFWTMLFGVGFRFAGYAAGH-----TQV 385 (1466)
Q Consensus 314 ya~GD~~~-~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~--~~~~p~~~s~~~~~~~~~~G~~~~~-----~~~ 385 (1466)
||+|||+. .+ ..+..|..||+.+|.||++.... +..+|+ ....+..+.++|..... .++
T Consensus 310 yA~GD~~~~~~-----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~--~~~~~~~~a~vG~~e~~a~~~g~~~ 376 (468)
T 2qae_A 310 YAIGDVVDKGP-----------MLAHKAEDEGVACAEILAGKPGHVNYGVIPA--VIYTMPEVASVGKSEDELKKEGVAY 376 (468)
T ss_dssp EECGGGBSSSC-----------SCHHHHHHHHHHHHHHHTTCCCCCCTTSCCE--EECSSSEEEEEECCHHHHHHTTCCE
T ss_pred EEeeccCCCCC-----------ccHhHHHHHHHHHHHHHcCCCccCCCCCCCE--EEECCCceEEEeCCHHHHHhcCCCE
Confidence 99999987 33 34668999999999999986543 445553 22233456666764321 112
Q ss_pred EEec-----------ccCCCeEEEEEEc--CCEEEEEEEECCC--HHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 386 DIVG-----------DLEALKFTAYYSN--ADKVLAILTVGMD--PLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 386 ~~~g-----------~~~~~~~~~~~~~--~~~i~g~~~~~~~--~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
.... .-+..+|.+++.+ +++|+|++++|.. +++..++ .+|+++.+. ++++|||++|.+
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~-~ai~~~~~~~~l~~~~~~~Pt~~e~~ 454 (468)
T 2qae_A 377 KVGKFPFNANSRAKAVSTEDGFVKVLVDKATDRILGVHIVCTTAGELIGEAC-LAMEYGASSEDVGRTCHAHPTMSEAL 454 (468)
T ss_dssp EEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHH-HHHHTTCBHHHHHTSCCCSSCTHHHH
T ss_pred EEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhhcccCCCCHHHHH
Confidence 1110 1135689999887 6899999999983 5666666 899999876 789999999988
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-35 Score=360.10 Aligned_cols=366 Identities=22% Similarity=0.339 Sum_probs=280.8
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCC---------------------------CCCCC--CCCCchhhcc
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN---------------------------FLPYD--RVKLSKQLDI 1116 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~---------------------------~~~~~--~~~l~~~~~~ 1116 (1466)
+++|+|||||+||+++|..|++.|. +|+|||++. ..||. .++.....
T Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~--~V~lie~~~~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~-- 79 (467)
T 1zk7_A 4 PVQVAVIGSGGAAMAAALKAVEQGA--QVTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTI-- 79 (467)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESSSTTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTTTSCCCCCCC--
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCCCCccccCCCccchHHHHHHHHHHHHHhhhhhcCCccCCCCcc--
Confidence 5789999999999999999999998 999999983 12222 11100000
Q ss_pred Ccccc---------cc---cChhhhccC-CcEEEcCCeEEEeecCCCCeEEecCC--cEEecCeEEEecCCCCCcCCCCC
Q psy2951 1117 KADSI---------LL---RTEEFYKDN-DIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQAD 1181 (1466)
Q Consensus 1117 ~~~~~---------~~---~~~~~~~~~-~v~~~~~~~v~~i~d~~~~~v~~~~g--~~~~yd~lvlAtG~~~~~~~~~~ 1181 (1466)
....+ .+ ...+++++. +++++.++ +..+ |.....|.+.+| ..+.||+||+|||++|+.|++|
T Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~-~~~~-~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~- 156 (467)
T 1zk7_A 80 DRSKLLAQQQARVDELRHAKYEGILGGNPAITVVHGE-ARFK-DDQSLTVRLNEGGERVVMFDRCLVATGASPAVPPIP- 156 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEEE-EEEE-ETTEEEEEETTSSEEEEECSEEEECCCEEECCCCCT-
T ss_pred CHHHHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEEE-EEEc-cCCEEEEEeCCCceEEEEeCEEEEeCCCCCCCCCCC-
Confidence 00000 01 123556677 99999886 8889 877677777788 6899999999999999999999
Q ss_pred CCCcEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCC
Q psy2951 1182 GVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKG 1261 (1466)
Q Consensus 1182 g~~~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~g 1261 (1466)
|++...++ +.+++..+. ..+++++|||+|++|+|+|..|++.|.+|+++++.+++++ +++++.+.+.+.++++|
T Consensus 157 G~~~~~~~-~~~~~~~~~---~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~--~~~~~~~~l~~~l~~~G 230 (467)
T 1zk7_A 157 GLKESPYW-TSTEALASD---TIPERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFR--EDPAIGEAVTAAFRAEG 230 (467)
T ss_dssp TTTTSCCB-CHHHHHHCS---SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT--SCHHHHHHHHHHHHHTT
T ss_pred CCCcCcee-cHHHHhccc---ccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCC--CCHHHHHHHHHHHHhCC
Confidence 88732223 466665543 3479999999999999999999999999999999998886 78999999999999999
Q ss_pred cEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccCccc--cccCCceeeCCCeEEeCCCccccCCCEEEe
Q psy2951 1262 VKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAG 1339 (1466)
Q Consensus 1262 v~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~ 1339 (1466)
|+++++++|++++ .+ +....|.++ +.++++|.||+|+|..|++++ ++..|++++.+|+|.||++++|+.|+|||+
T Consensus 231 v~i~~~~~v~~i~-~~-~~~~~v~~~-~~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~iya~ 307 (467)
T 1zk7_A 231 IEVLEHTQASQVA-HM-DGEFVLTTT-HGELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQGMRTSNPNIYAA 307 (467)
T ss_dssp CEEETTCCEEEEE-EE-TTEEEEEET-TEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTCBCSSTTEEEC
T ss_pred CEEEcCCEEEEEE-Ee-CCEEEEEEC-CcEEEcCEEEECCCCCcCCCcCCchhcCCcCCCCCCEEECCCcccCCCCEEEE
Confidence 9999999999998 33 344456666 458999999999999999885 577899988888999999999999999999
Q ss_pred cccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCCCC--CCCCCccceeccccccEEEEeeCC------CCceEEEc
Q psy2951 1340 GDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT--SLSTIPFFWTMLFGVGFRFAGYAA------GHTQVDIV 1411 (1466)
Q Consensus 1340 GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~~--~~~~~p~~w~~~~~~~~~~~g~~~------~~~~~~~~ 1411 (1466)
|||+..|.. |..|..||+.||.||++... .+..+|++ ..++..+..+|..+ +.+-.+..
T Consensus 308 GD~~~~~~~-----------~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~--~~~~~~~a~vG~~~~~a~~~g~~~~~~~ 374 (467)
T 1zk7_A 308 GDCTDQPQF-----------VYVAAAAGTRAAINMTGGDAALDLTAMPAV--VFTDPQVATVGYSEAEAHHDGIETDSRT 374 (467)
T ss_dssp STTBSSCCC-----------HHHHHHHHHHHHHHHTTCCCCCCCTTCEEE--ECSSSEEEEEECCHHHHHHTTCCEEEEE
T ss_pred eccCCCccc-----------HHHHHHHHHHHHHHHcCCCcccCCCCCCEE--EecCCceEEEecCHHHHHhcCCCeEEEE
Confidence 999987653 47899999999999998643 34567765 22346788888753 22211111
Q ss_pred C----------CcCCceEEEEEEe--CCEEEEEEEecCc--HHHHHHHHHHHcCCCCChhccccc
Q psy2951 1412 G----------DLEALKFTAYYSN--ADKVLAILTVGMD--PLAAQFAERIKMQKYIQKDQIENN 1462 (1466)
Q Consensus 1412 ~----------~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 1462 (1466)
- +.++..|++++++ +++|+|+..+|.. ..+..+..+|+.+. +.++|++.
T Consensus 375 ~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~a~~~i~~~~~~i~~~~--~~~~l~~~ 437 (467)
T 1zk7_A 375 LTLDNVPRALANFDTRGFIKLVIEEGSHRLIGVQAVAPEAGELIQTAALAIRNRM--TVQELADQ 437 (467)
T ss_dssp EEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTC--BHHHHHTS
T ss_pred EecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCC--CHHHHhcC
Confidence 0 1135568888886 7999999999997 44566778888874 55555443
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-36 Score=367.21 Aligned_cols=374 Identities=22% Similarity=0.281 Sum_probs=275.3
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCC----CCccchh-----------------ccc------Cc
Q psy2951 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD----RVKLSKQ-----------------LDI------KA 95 (1466)
Q Consensus 43 ~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~----~~~~~~~-----------------~~~------~~ 95 (1466)
++||+||||||||++||..|++.|.++.|++ ++. .... .+..++. ... ..
T Consensus 3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE--~~~-~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~~~~~~~~ 79 (464)
T 2a8x_A 3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVE--PKY-WGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGISGEVTFDY 79 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEC--SSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEEECCEECH
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEe--CCC-CCCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCCCCCccCH
Confidence 4799999999999999999999999877754 331 1100 0000000 000 00
Q ss_pred cc-----------ccccChhhhhcCCeEEEeCceEEEeccccccEEEecCC--cEEecCEEEEccCCCCCCCCCCCCCCc
Q psy2951 96 DS-----------ILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQADGVNK 162 (1466)
Q Consensus 96 ~~-----------~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~--~~~~~d~lviAtG~~~~~~~~~~~~~~ 162 (1466)
.. +...+.+.+++.+++++.++.+. .+....++.+.++ .++.||+||+|||++|+.++ .++.+.
T Consensus 80 ~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~--id~~~v~V~~~~G~~~~~~~d~lViAtG~~~~~~~-~~g~~~ 156 (464)
T 2a8x_A 80 GIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTF--ADANTLLVDLNDGGTESVTFDNAIIATGSSTRLVP-GTSLSA 156 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEE--SSSSEEEEEETTSCCEEEEEEEEEECCCEEECCCT-TCCCBT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE--ecCCeEEEEeCCCceEEEEcCEEEECCCCCCCCCC-CCCCCc
Confidence 00 11112455667899999998765 3444556666667 68999999999999987655 333332
Q ss_pred EEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEE
Q psy2951 163 VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFV 242 (1466)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~ 242 (1466)
. +.+..+...+.. .+++++|||+|++|+|+|..+++.|.+||++++.+.+++ .+++++.+.+.+.++++||+++
T Consensus 157 ~--~~~~~~~~~~~~---~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~gv~i~ 230 (464)
T 2a8x_A 157 N--VVTYEEQILSRE---LPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALP-NEDADVSKEIEKQFKKLGVTIL 230 (464)
T ss_dssp T--EECHHHHHTCSS---CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHHTCEEE
T ss_pred e--EEecHHHhhccc---cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCcccc-ccCHHHHHHHHHHHHHcCCEEE
Confidence 1 235666655442 468999999999999999999999999999999987764 6889999999999999999999
Q ss_pred cCceEEEEEecCCCCeEEEEcC-CC--cEEeccEEEEeeccccCccc--cccCCceecCCccEEECCCCCcCCCCEEEec
Q psy2951 243 MKANVSSFEKNEKNDVTAANLD-NG--TTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGG 317 (1466)
Q Consensus 243 ~~~~v~~i~~~~~~~~~~v~~~-~g--~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~~~iya~G 317 (1466)
++++|++++.+++ .+ .+.+. +| +++++|.||+|+|++||+++ ++..|++++++|+|.||+++||+.|+|||+|
T Consensus 231 ~~~~v~~i~~~~~-~~-~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t~~~~IyA~G 308 (464)
T 2a8x_A 231 TATKVESIADGGS-QV-TVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYMRTNVGHIYAIG 308 (464)
T ss_dssp CSCEEEEEEECSS-CE-EEEEESSSCEEEEEESEEEECSCEEECCSSSCHHHHTCCBCTTSSBCCCTTSBCSSTTEEECG
T ss_pred eCcEEEEEEEcCC-eE-EEEEEcCCceEEEEcCEEEECCCCCccCCCCCchhcCCccCCCCCEeECcCCccCCCCEEEeE
Confidence 9999999987542 23 34443 45 67999999999999999998 6778899988899999999999999999999
Q ss_pred ccccccCccCCCCcceeccHHHHHHHHHHHHHHhcC-CCCC---CCCCCcccccccceeeEEEEeecCC-----ceEEEe
Q psy2951 318 DIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVE-KKTS---LSTIPFFWTMLFGVGFRFAGYAAGH-----TQVDIV 388 (1466)
Q Consensus 318 D~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~-~~~~---~~~~p~~~s~~~~~~~~~~G~~~~~-----~~~~~~ 388 (1466)
||+..+ ..+..|..||+.+|.||++ .... +..+|+. ...+..+.++|..... .++...
T Consensus 309 D~~~~~-----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~--~~~~~~~a~vG~~e~~a~~~g~~~~~~ 375 (464)
T 2a8x_A 309 DVNGLL-----------QLAHVAEAQGVVAAETIAGAETLTLGDHRMLPRA--TFCQPNVASFGLTEQQARNEGYDVVVA 375 (464)
T ss_dssp GGGCSS-----------CSHHHHHHHHHHHHHHHHTCCCCCCCCGGGSCEE--ECSSSEEEEEECCHHHHHHTTCCEEEE
T ss_pred CcCCCc-----------cCHHHHHHHHHHHHHHhcCCCCcccCCCCCCCEE--EECCCCeEEEcCCHHHHHhcCCCEEEE
Confidence 998753 3456899999999999998 4433 4455632 2223345666654321 112111
Q ss_pred c-----------ccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 389 G-----------DLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 389 g-----------~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
. .-+..+|.+++.+ +++|+|++++|. ++++..++ .+|+++.+. ++++|||++|.+
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~-~ai~~~~~~~~l~~~~~~~Pt~~e~~ 450 (464)
T 2a8x_A 376 KFPFTANAKAHGVGDPSGFVKLVADAKHGELLGGHLVGHDVAELLPELT-LAQRWDLTASELARNVHTHPTMSEAL 450 (464)
T ss_dssp EEEGGGCHHHHHHTCCCCEEEEEEETTTTEEEEEEEEETTGGGGHHHHH-HHHHTTCBHHHHTTSCCCTTCTTHHH
T ss_pred EEEcchhhhhhhcCCCcEEEEEEEECCCCEEEEEEEECcCHHHHHHHHH-HHHHCCCCHHHHhhCccCCCChHHHH
Confidence 0 0135689999886 689999999998 35677777 999999876 789999999988
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-36 Score=367.37 Aligned_cols=367 Identities=20% Similarity=0.289 Sum_probs=279.9
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCC----Cchhhc-------------------------c
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK----LSKQLD-------------------------I 1116 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~----l~~~~~-------------------------~ 1116 (1466)
+++|+|||||+||++||..|++.|. +|+|||+++.++..... .++.+. .
T Consensus 6 ~~dvvIIGgG~aGl~aA~~l~~~g~--~V~liE~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~~~~~ 83 (474)
T 1zmd_A 6 DADVTVIGSGPGGYVAAIKAAQLGF--KTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMSEVRL 83 (474)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTC--CEEEEECSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEEESCEEE
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCC--eEEEEeCCCCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccccCCCcc
Confidence 4689999999999999999999998 99999998754321000 001000 0
Q ss_pred Cccccc-----------ccChhhhccCCcEEEcCCeEEEeecCCCCeEEecC-C-cEEecCeEEEecCCCCCcCCCCCCC
Q psy2951 1117 KADSIL-----------LRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQD-G-TSIDFTKIYLATGSSPRTISQADGV 1183 (1466)
Q Consensus 1117 ~~~~~~-----------~~~~~~~~~~~v~~~~~~~v~~i~d~~~~~v~~~~-g-~~~~yd~lvlAtG~~~~~~~~~~g~ 1183 (1466)
+...+. ....+++.+.+++++.++ +..+ |+....|.+.+ + .++.||+||+|||++|+.|+++ |.
T Consensus 84 ~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~-~~~~-~~~~~~v~~~~gg~~~~~~d~lViAtGs~p~~p~i~-g~ 160 (474)
T 1zmd_A 84 NLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGY-GKIT-GKNQVTATKADGGTQVIDTKNILIATGSEVTPFPGI-TI 160 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESE-EEEE-ETTEEEEECTTSCEEEEEEEEEEECCCEEECCCTTC-CC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEe-cCCEEEEEecCCCcEEEEeCEEEECCCCCCCCCCCC-CC
Confidence 000000 001345567799999997 6678 87666677766 4 5799999999999999999988 87
Q ss_pred C--cEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCC
Q psy2951 1184 N--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKG 1261 (1466)
Q Consensus 1184 ~--~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~g 1261 (1466)
+ +++ +.+++.++. ..+++++|||+|++|+|+|..|++.|.+|+++++.++++++.+++++.+.+.+.++++|
T Consensus 161 ~~~~v~---t~~~~~~~~---~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~G 234 (474)
T 1zmd_A 161 DEDTIV---SSTGALSLK---KVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQG 234 (474)
T ss_dssp CSSSEE---CHHHHTTCS---SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCSSCCHHHHHHHHHHHHHTT
T ss_pred CcCcEE---cHHHHhhcc---ccCceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCcccCHHHHHHHHHHHHHCC
Confidence 6 343 456664443 23689999999999999999999999999999999988876789999999999999999
Q ss_pred cEEEcCceEEEEEecCCCcEEEEE-----cCCCCeeecCEEEEeeccccCccc--cccCCceeeCCCeEEeCCCccccCC
Q psy2951 1262 VKFVMKANVSSFEKNEKNDVTAAN-----LDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVP 1334 (1466)
Q Consensus 1262 v~~~~~~~v~~i~~~~~g~~~~v~-----l~~g~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t~~~ 1334 (1466)
|+++++++|++++ .+++....+. ..+++++++|.||+|+|..|++++ ++.+|+.++.+|+|.||+++||+.|
T Consensus 235 v~i~~~~~v~~i~-~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~ 313 (474)
T 1zmd_A 235 FKFKLNTKVTGAT-KKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIP 313 (474)
T ss_dssp CEEECSEEEEEEE-ECTTSCEEEEEEETTSCCCEEEEESEEEECSCEEECCTTSSHHHHTCCCCTTSCCCCCTTCBCSST
T ss_pred CEEEeCceEEEEE-EcCCceEEEEEEecCCCCceEEEcCEEEECcCCCcCCCcCCchhcCCccCCCCCEEECcCCccCCC
Confidence 9999999999998 3333313354 356778999999999999999997 6788999888889999999999999
Q ss_pred CEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCCCCC--CCCCccceeccccccEEEEeeCCC-----Cce
Q psy2951 1335 GVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS--LSTIPFFWTMLFGVGFRFAGYAAG-----HTQ 1407 (1466)
Q Consensus 1335 ~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~~~--~~~~p~~w~~~~~~~~~~~g~~~~-----~~~ 1407 (1466)
+|||+|||+..|.. ++.|..||+.||.||+|...+ |..+|++| .++..+-.+|..+. ..+
T Consensus 314 ~IyA~GD~~~~~~~-----------~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~--~~~~~~a~vG~~e~~a~~~g~~ 380 (474)
T 1zmd_A 314 NIYAIGDVVAGPML-----------AHKAEDEGIICVEGMAGGAVHIDYNCVPSVI--YTHPEVAWVGKSEEQLKEEGIE 380 (474)
T ss_dssp TEEECGGGSSSCCC-----------HHHHHHHHHHHHHHHTTCCCCCCGGGCCEEE--CSSSEEEEEECCHHHHHHHTCC
T ss_pred CEEEeeecCCCCcc-----------HHHHHHHHHHHHHHhcCCCCcCCCCCCCEEE--ECCCCeEEEeCCHHHHHhcCCC
Confidence 99999999986543 378999999999999997644 56678765 45677888887531 111
Q ss_pred EEEcC-----------CcCCceEEEEEEe--CCEEEEEEEecCc--HHHHHHHHHHHcCCCCChhcc
Q psy2951 1408 VDIVG-----------DLEALKFTAYYSN--ADKVLAILTVGMD--PLAAQFAERIKMQKYIQKDQI 1459 (1466)
Q Consensus 1408 ~~~~~-----------~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 1459 (1466)
+.+.. .-+...|++++++ +++|+|+..+|.. ..+..+..+|+.+. +.++|
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~--~~~~l 445 (474)
T 1zmd_A 381 YKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGEMVNEAALALEYGA--SCEDI 445 (474)
T ss_dssp EEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTC--BHHHH
T ss_pred EEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCC--CHHHH
Confidence 22110 1134568888886 6899999999997 34677888888874 44555
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-36 Score=368.46 Aligned_cols=378 Identities=21% Similarity=0.296 Sum_probs=273.3
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCC----Cccc-----------------hhcccC------
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR----VKLS-----------------KQLDIK------ 94 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~~----~~~~-----------------~~~~~~------ 94 (1466)
.++||+||||||||++||..|++.|+++.|++..+. ..... +..+ ..+...
T Consensus 24 ~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~--~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 101 (491)
T 3urh_A 24 MAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRST--YGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVEVANPKL 101 (491)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS--SSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGGTEECCCCEE
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC--CCCccccccchhhHHHHHHHHHHHHHHhhHhhcCcccCCCcc
Confidence 358999999999999999999999999888664322 11000 0000 000000
Q ss_pred -c-----------ccccccChhhhhcCCeEEEeCceEEEeccccccEEEecCC--cEEecCEEEEccCCCCCCCCCCCC-
Q psy2951 95 -A-----------DSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQADG- 159 (1466)
Q Consensus 95 -~-----------~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~--~~~~~d~lviAtG~~~~~~~~~~~- 159 (1466)
. ..+...+...+++.+++++.+..... +....++...++ .++.||+||||||++|..+|..+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~--~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~ipg~~~~ 179 (491)
T 3urh_A 102 NLQKMMAHKDATVKSNVDGVSFLFKKNKIDGFQGTGKVL--GQGKVSVTNEKGEEQVLEAKNVVIATGSDVAGIPGVEVA 179 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEEC--SSSEEEEECTTSCEEEEECSEEEECCCEECCCBTTBCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEe--cCCEEEEEeCCCceEEEEeCEEEEccCCCCCCCCCcccc
Confidence 0 01111233456678999999987653 444556666666 579999999999998765554431
Q ss_pred CCcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCc
Q psy2951 160 VNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGV 239 (1466)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV 239 (1466)
..... +.+..+...+. ..+++++|||+|++|+|+|..+++.|.+|+++++.+.++ +.+++++.+.+.+.+++.||
T Consensus 180 ~~~~~-~~~~~~~~~~~---~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-~~~d~~~~~~l~~~l~~~gV 254 (491)
T 3urh_A 180 FDEKT-IVSSTGALALE---KVPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTIL-GGMDGEVAKQLQRMLTKQGI 254 (491)
T ss_dssp CCSSS-EECHHHHTSCS---SCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSS-SSSCHHHHHHHHHHHHHTTC
T ss_pred cCCee-EEehhHhhhhh---hcCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecccccc-ccCCHHHHHHHHHHHHhCCC
Confidence 11111 22445444432 346899999999999999999999999999999988776 46789999999999999999
Q ss_pred EEEcCceEEEEEecCCCCeEEEEcC---CC--cEEeccEEEEeeccccCccc--cccCCceecCCccEEECCCCCcCCCC
Q psy2951 240 KFVMKANVSSFEKNEKNDVTAANLD---NG--TTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPG 312 (1466)
Q Consensus 240 ~i~~~~~v~~i~~~~~~~~~~v~~~---~g--~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~~~ 312 (1466)
++++++++++++.+++ . ..+.+. +| +++++|.||+|+|++|++++ ++..|++++++|+|.||++++|+.|+
T Consensus 255 ~v~~~~~v~~i~~~~~-~-~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~ 332 (491)
T 3urh_A 255 DFKLGAKVTGAVKSGD-G-AKVTFEPVKGGEATTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDRHFQTSIAG 332 (491)
T ss_dssp EEECSEEEEEEEEETT-E-EEEEEEETTSCCCEEEEESEEEECCCCEECCTTSCHHHHTCCBCTTSCBCCCTTCBCSSTT
T ss_pred EEEECCeEEEEEEeCC-E-EEEEEEecCCCceEEEEcCEEEEeeCCccCCCccCchhcCceECCCCCEeECCCCCCCCCC
Confidence 9999999999987542 2 223333 14 68999999999999999987 67788999999999999999999999
Q ss_pred EEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCCCC--CCCCCcccccccceeeEEEEeecCC-----ceE
Q psy2951 313 VYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS--LSTIPFFWTMLFGVGFRFAGYAAGH-----TQV 385 (1466)
Q Consensus 313 iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~--~~~~p~~~s~~~~~~~~~~G~~~~~-----~~~ 385 (1466)
|||+|||++.+ ..+..|..||+.+|.||++.... +..+|+ .......+..+|.+... .++
T Consensus 333 IyA~GD~~~~~-----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~--~~~~~p~~a~vGlte~~a~~~g~~~ 399 (491)
T 3urh_A 333 VYAIGDVVRGP-----------MLAHKAEDEGVAVAEIIAGQAGHVNYDVIPG--VVYTQPEVASVGKTEEELKAAGVAY 399 (491)
T ss_dssp EEECGGGSSSC-----------CCHHHHHHHHHHHHHHHTTSCCCCCTTCCCE--EECSSSCEEEEECCHHHHHHTTCCE
T ss_pred EEEEEecCCCc-----------cchhHHHHHHHHHHHHHcCCCcccCCCCCCE--EEEccCCeEEEeCCHHHHHhCCCCE
Confidence 99999998654 34678999999999999987543 445553 22233345555654311 111
Q ss_pred EEe-----c------ccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 386 DIV-----G------DLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 386 ~~~-----g------~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
... . ..+..+|.+++.+ +++|+|++++|. +++++.++ .+|+++.+. ++++|||++|.+
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~-~ai~~~~t~~~l~~~~~~hPt~~e~~ 477 (491)
T 3urh_A 400 KIGKFPFTANGRARAMLQTDGFVKILADKETDRVLGGHIIGFGAGEMIHEIA-VLMEFGGSSEDLGRTCHAHPTMSEAV 477 (491)
T ss_dssp EEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEESTTHHHHHHHHH-HHHHTTCBHHHHHTSCCCSSCTTHHH
T ss_pred EEEEEecCcchhhhcCCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCcHHHHhcCccCCCChHHHH
Confidence 110 0 0135689998887 489999999998 55677777 999999886 789999999998
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-35 Score=361.27 Aligned_cols=374 Identities=23% Similarity=0.318 Sum_probs=274.4
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCC---C-Cccchh----------------ccc-------Cc
Q psy2951 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD---R-VKLSKQ----------------LDI-------KA 95 (1466)
Q Consensus 43 ~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~---~-~~~~~~----------------~~~-------~~ 95 (1466)
++||+|||||+||++||..|++.|+++.|++.+ . .... . +..++. ... ..
T Consensus 3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~--~-~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 79 (455)
T 1ebd_A 3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG--N-LGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDF 79 (455)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS--C-TTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECH
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC--C-CCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCcccCCCccCH
Confidence 479999999999999999999999988876543 1 1100 0 000000 000 00
Q ss_pred cc-----------ccccChhhhhcCCeEEEeCceEEEeccccccEEEecCC-cEEecCEEEEccCCCCCCCCCCCCCCcE
Q psy2951 96 DS-----------ILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDG-TSIDFTKIYLATGSSPRTISQADGVNKV 163 (1466)
Q Consensus 96 ~~-----------~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~-~~~~~d~lviAtG~~~~~~~~~~~~~~~ 163 (1466)
.. +...+...+++.+++++.++.+.. +....++.+.++ .++.||+||+|||++|..++. ++.+..
T Consensus 80 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~i--d~~~v~V~~~~G~~~i~~d~lViATGs~p~~~~~-~g~~~~ 156 (455)
T 1ebd_A 80 AKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFV--DANTVRVVNGDSAQTYTFKNAIIATGSRPIELPN-FKFSNR 156 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEEE--ETTEEEEEETTEEEEEECSEEEECCCEEECCBTT-BCCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEc--cCCeEEEEeCCCcEEEEeCEEEEecCCCCCCCCC-CCccce
Confidence 01 111224566778999999997753 344456666666 679999999999999886553 333221
Q ss_pred EEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEEc
Q psy2951 164 FYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVM 243 (1466)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~ 243 (1466)
+.+..+...+.. .+++++|||+|++|+|+|..|++.|.+|+++++.+.+++ .+++++.+.+.+.+++.||++++
T Consensus 157 --v~~~~~~~~~~~---~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~gv~i~~ 230 (455)
T 1ebd_A 157 --ILDSTGALNLGE---VPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILS-GFEKQMAAIIKKRLKKKGVEVVT 230 (455)
T ss_dssp --EECHHHHHTCSS---CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-TSCHHHHHHHHHHHHHTTCEEEE
T ss_pred --EecHHHHhcccc---CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc-ccCHHHHHHHHHHHHHCCCEEEe
Confidence 235566655442 368999999999999999999999999999999887664 67899999999999999999999
Q ss_pred CceEEEEEecCCCCeEEEEcC---CCcEEeccEEEEeeccccCccc--cccCCceecCCccEEECCCCCcCCCCEEEecc
Q psy2951 244 KANVSSFEKNEKNDVTAANLD---NGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGD 318 (1466)
Q Consensus 244 ~~~v~~i~~~~~~~~~~v~~~---~g~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD 318 (1466)
+++|++++.+++ .+ .+.+. +++++++|.||+|+|++|++++ ++..|++++++|+|.||+++||+.|+|||+||
T Consensus 231 ~~~v~~i~~~~~-~~-~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD 308 (455)
T 1ebd_A 231 NALAKGAEERED-GV-TVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNIFAIGD 308 (455)
T ss_dssp SEEEEEEEEETT-EE-EEEEEETTEEEEEEESEEEECSCEEESCSSSSTTTTTCCBCTTSCBCCCTTCBCSSTTEEECGG
T ss_pred CCEEEEEEEeCC-eE-EEEEEeCCceeEEEcCEEEECcCCCcccCcCChhhcCCccCCCCCEeeCCCcccCCCCEEEEec
Confidence 999999986542 22 33332 4568999999999999999987 67888999888999999999999999999999
Q ss_pred cccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCCCC--CCCCCcccccccceeeEEEEeecCC-----ceEEEec--
Q psy2951 319 IAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS--LSTIPFFWTMLFGVGFRFAGYAAGH-----TQVDIVG-- 389 (1466)
Q Consensus 319 ~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~--~~~~p~~~s~~~~~~~~~~G~~~~~-----~~~~~~g-- 389 (1466)
|+..+ ..+..|..||+.+|.||.+.... +..+|+ ....+..+.++|..... .++....
T Consensus 309 ~~~~~-----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~--~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~ 375 (455)
T 1ebd_A 309 IVPGP-----------ALAHKASYEGKVAAEAIAGHPSAVDYVAIPA--VVFSDPECASVGYFEQQAKDEGIDVIAAKFP 375 (455)
T ss_dssp GSSSC-----------CCHHHHHHHHHHHHHHHTSCCCCCCCSCCCE--EECSSSCEEEEECCHHHHHTTTCCEEEEEEE
T ss_pred cCCCc-----------ccHHHHHHHHHHHHHHHcCCCccCCCCCCCE--EEECCCceEEEeCCHHHHHhcCCCEEEEEEE
Confidence 98753 34568999999999999986543 345553 22233345566654311 1121110
Q ss_pred ---------ccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 390 ---------DLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 390 ---------~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
.-+..+|.+++.+ +++|+|++++|. +++++.++ .+|+++.+. ++++|||++|.+
T Consensus 376 ~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~-~ai~~~~~~~~l~~~~~~~Pt~~e~~ 447 (455)
T 1ebd_A 376 FAANGRALALNDTDGFLKLVVRKEDGVIIGAQIIGPNASDMIAELG-LAIEAGMTAEDIALTIHAHPTLGEIA 447 (455)
T ss_dssp GGGCHHHHHHTCCCCEEEEEEETTTTEEEEEEEESTTHHHHHHHHH-HHHHHTCBHHHHHHSCCCTTSSTHHH
T ss_pred cCcchHHhhcCCCcEEEEEEEECCCCEEEEEEEeCCCHHHHHHHHH-HHHHCCCCHHHHhhcccCCCCHHHHH
Confidence 0135689999887 689999999998 35666666 899988876 799999999988
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=365.94 Aligned_cols=378 Identities=19% Similarity=0.284 Sum_probs=277.0
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCC----Cccch-----------------hccc--------
Q psy2951 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR----VKLSK-----------------QLDI-------- 93 (1466)
Q Consensus 43 ~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~~----~~~~~-----------------~~~~-------- 93 (1466)
++||+||||||||++||..|++.|+++.|++..+ ...... +..++ ....
T Consensus 5 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~--~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~ 82 (478)
T 1v59_A 5 SHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRG--KLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKI 82 (478)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS--SSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEEE
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCC--CcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCcc
Confidence 5799999999999999999999999877765422 111000 00000 0000
Q ss_pred Ccccc-----------cccChhhhhcCCeEEEeCceEEEeccccccEEEecCC--cE------EecCEEEEccCCCCCCC
Q psy2951 94 KADSI-----------LLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDG--TS------IDFTKIYLATGSSPRTI 154 (1466)
Q Consensus 94 ~~~~~-----------~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~--~~------~~~d~lviAtG~~~~~~ 154 (1466)
...++ ...+.+.+++.+++++.++.+.. +....++.+.++ .+ +.||+||+|||++|+.+
T Consensus 83 ~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~--~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAtGs~p~~~ 160 (478)
T 1v59_A 83 NVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFE--DETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPF 160 (478)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEES--SSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEEECCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEc--cCCeEEEEecCCCcccccccceEEeCEEEECcCCCCCCC
Confidence 00010 01123456678999999997753 444455666565 56 99999999999998655
Q ss_pred CCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHH
Q psy2951 155 SQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLF 234 (1466)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l 234 (1466)
|..+. .. ..+.+..++..+.. .+++++|||+|++|+|+|..|++.|.+||++++.+.+++ .+++++.+.+.+.+
T Consensus 161 ~g~~~-~~-~~v~~~~~~~~~~~---~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l 234 (478)
T 1v59_A 161 PGIEI-DE-EKIVSSTGALSLKE---IPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGA-SMDGEVAKATQKFL 234 (478)
T ss_dssp TTCCC-CS-SSEECHHHHTTCSS---CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSS-SSCHHHHHHHHHHH
T ss_pred CCCCC-CC-ceEEcHHHHHhhhc---cCceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcccc-ccCHHHHHHHHHHH
Confidence 54432 21 12335666665543 368999999999999999999999999999999988775 78899999999999
Q ss_pred HhCCcEEEcCceEEEEEecCCCCeEEEEcC-----CCcEEeccEEEEeeccccCcc--ccccCCceecCCccEEECCCCC
Q psy2951 235 ESKGVKFVMKANVSSFEKNEKNDVTAANLD-----NGTTIPADLVIVGIGTVLNTN--YLDGKGVELNGQKAVVVNEYLE 307 (1466)
Q Consensus 235 ~~~GV~i~~~~~v~~i~~~~~~~~~~v~~~-----~g~~i~~D~Vi~a~G~~p~~~--~l~~~gl~~~~~g~i~vd~~~~ 307 (1466)
++.||+++++++|++++..+++....+.+. +++++++|.||+|+|++||++ +++..|++++++|+|.||+++|
T Consensus 235 ~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~ 314 (478)
T 1v59_A 235 KKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFN 314 (478)
T ss_dssp HHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECCTTSCTTTTTCCBCTTSCBCCCTTSB
T ss_pred HHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCCCCCCchhcCceeCCCCCEeECcCCc
Confidence 999999999999999986211233344443 456899999999999999998 7788899999889999999999
Q ss_pred cCCCCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCC--CCCCCCCcccccccceeeEEEEeecC----
Q psy2951 308 TNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK--TSLSTIPFFWTMLFGVGFRFAGYAAG---- 381 (1466)
Q Consensus 308 t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~--~~~~~~p~~~s~~~~~~~~~~G~~~~---- 381 (1466)
|+.|+|||+|||+..+ ..+..|..||+.+|.||++.. .++..+|++|.... .+.++|....
T Consensus 315 t~~~~IyA~GD~~~~~-----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~--~~a~vG~~e~~a~~ 381 (478)
T 1v59_A 315 SKFPHIKVVGDVTFGP-----------MLAHKAEEEGIAAVEMLKTGHGHVNYNNIPSVMYSHP--EVAWVGKTEEQLKE 381 (478)
T ss_dssp CSSTTEEECGGGSSSC-----------CCHHHHHHHHHHHHHHHHHSCCCCCTTSCCEEECSSS--EEEEEECCHHHHHH
T ss_pred cCCCCEEEeeccCCCc-----------ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCEEEEcCC--cEEEEECCHHHHHH
Confidence 9999999999998754 345689999999999999754 35677887765543 3456665431
Q ss_pred -CceEEEec-----------ccCCCeEEEEEEc--CCEEEEEEEECCC--HHHHHHHHHHhcCCCcc-----ccccCccc
Q psy2951 382 -HTQVDIVG-----------DLEALKFTAYYSN--ADKVLAILTVGMD--PLAAQFAEQVLEFPYSS-----LPHSHRCL 440 (1466)
Q Consensus 382 -~~~~~~~g-----------~~~~~~~~~~~~~--~~~i~g~~~~~~~--~~~~~~~~~~i~~~~~~-----~~~~~p~~ 440 (1466)
..++.... ..+..+|.+++.+ +++|+|++++|.. +++..++ .+|+.+.+. ++++|||+
T Consensus 382 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~-~~i~~~~~~~~l~~~~~~~Pt~ 460 (478)
T 1v59_A 382 AGIDYKIGKFPFAANSRAKTNQDTEGFVKILIDSKTERILGAHIIGPNAGEMIAEAG-LALEYGASAEDVARVCHAHPTL 460 (478)
T ss_dssp TTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHH-HHHHTTCBHHHHHTSCCCTTCT
T ss_pred cCCCEEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhhCCCCCCCH
Confidence 11121110 0134678888776 5999999999983 4555555 899998876 79999999
Q ss_pred chhh
Q psy2951 441 GVVL 444 (1466)
Q Consensus 441 ~e~~ 444 (1466)
+|.+
T Consensus 461 ~e~~ 464 (478)
T 1v59_A 461 SEAF 464 (478)
T ss_dssp THHH
T ss_pred HHHH
Confidence 9988
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=365.02 Aligned_cols=378 Identities=21% Similarity=0.285 Sum_probs=277.7
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCC----Cccchh------------------cc-------c
Q psy2951 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR----VKLSKQ------------------LD-------I 93 (1466)
Q Consensus 43 ~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~~----~~~~~~------------------~~-------~ 93 (1466)
++||+||||||||++||..|++.|.++.|++.++ ...... +..++. .. .
T Consensus 6 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~--~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~~~~~ 83 (474)
T 1zmd_A 6 DADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNE--TLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMSEVRL 83 (474)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS--SSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEEESCEEE
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC--CcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccccCCCcc
Confidence 5799999999999999999999999877765432 211000 000000 00 0
Q ss_pred Cccccc-----------ccChhhhhcCCeEEEeCceEEEeccccccEEEecC-C-cEEecCEEEEccCCCCCCCCCCCCC
Q psy2951 94 KADSIL-----------LRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQD-G-TSIDFTKIYLATGSSPRTISQADGV 160 (1466)
Q Consensus 94 ~~~~~~-----------~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~-~-~~~~~d~lviAtG~~~~~~~~~~~~ 160 (1466)
+...+. ..+..++++.+++++.++.+.. +....++.+.+ + .++.||+||+|||++|..++ +++.
T Consensus 84 ~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~--~~~~~~v~~~~gg~~~~~~d~lViAtGs~p~~p~-i~g~ 160 (474)
T 1zmd_A 84 NLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKIT--GKNQVTATKADGGTQVIDTKNILIATGSEVTPFP-GITI 160 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEEE--ETTEEEEECTTSCEEEEEEEEEEECCCEEECCCT-TCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEe--cCCEEEEEecCCCcEEEEeCEEEECCCCCCCCCC-CCCC
Confidence 011111 1124566778999999987654 34445666665 4 57999999999999988655 4443
Q ss_pred CcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcE
Q psy2951 161 NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVK 240 (1466)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~ 240 (1466)
+... +.+..+...+.. .+++++|||+|++|+|+|..+++.|.+|+++++.+.++++.+++++.+.+.+.+++.||+
T Consensus 161 ~~~~-v~t~~~~~~~~~---~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~ 236 (474)
T 1zmd_A 161 DEDT-IVSSTGALSLKK---VPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFK 236 (474)
T ss_dssp CSSS-EECHHHHTTCSS---CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCSSCCHHHHHHHHHHHHHTTCE
T ss_pred CcCc-EEcHHHHhhccc---cCceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCcccCHHHHHHHHHHHHHCCCE
Confidence 3211 125555555432 358999999999999999999999999999999988775478999999999999999999
Q ss_pred EEcCceEEEEEecCCCCeEEEE-----cCCCcEEeccEEEEeeccccCccc--cccCCceecCCccEEECCCCCcCCCCE
Q psy2951 241 FVMKANVSSFEKNEKNDVTAAN-----LDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGV 313 (1466)
Q Consensus 241 i~~~~~v~~i~~~~~~~~~~v~-----~~~g~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~~~i 313 (1466)
++++++|++++.++++.+ .+. .++++++++|.||+|+|++||+++ ++..|++++++|+|.||+++||+.|+|
T Consensus 237 i~~~~~v~~i~~~~~~~~-~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~I 315 (474)
T 1zmd_A 237 FKLNTKVTGATKKSDGKI-DVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNI 315 (474)
T ss_dssp EECSEEEEEEEECTTSCE-EEEEEETTSCCCEEEEESEEEECSCEEECCTTSSHHHHTCCCCTTSCCCCCTTCBCSSTTE
T ss_pred EEeCceEEEEEEcCCceE-EEEEEecCCCCceEEEcCEEEECcCCCcCCCcCCchhcCCccCCCCCEEECcCCccCCCCE
Confidence 999999999987543213 333 456778999999999999999987 677889998889999999999999999
Q ss_pred EEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCCC--CCCCCCcccccccceeeEEEEeecCC-----ceEE
Q psy2951 314 YAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT--SLSTIPFFWTMLFGVGFRFAGYAAGH-----TQVD 386 (1466)
Q Consensus 314 ya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~--~~~~~p~~~s~~~~~~~~~~G~~~~~-----~~~~ 386 (1466)
||+|||+..+ ..+..|..||+.+|.||++... .+..+|+.| .....+.++|..... .++.
T Consensus 316 yA~GD~~~~~-----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~--~~~~~~a~vG~~e~~a~~~g~~~~ 382 (474)
T 1zmd_A 316 YAIGDVVAGP-----------MLAHKAEDEGIICVEGMAGGAVHIDYNCVPSVI--YTHPEVAWVGKSEEQLKEEGIEYK 382 (474)
T ss_dssp EECGGGSSSC-----------CCHHHHHHHHHHHHHHHTTCCCCCCGGGCCEEE--CSSSEEEEEECCHHHHHHHTCCEE
T ss_pred EEeeecCCCC-----------ccHHHHHHHHHHHHHHhcCCCCcCCCCCCCEEE--ECCCCeEEEeCCHHHHHhcCCCEE
Confidence 9999998754 3456899999999999998653 345666543 223345666664321 1121
Q ss_pred Eec-----------ccCCCeEEEEEEc--CCEEEEEEEECCC--HHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 387 IVG-----------DLEALKFTAYYSN--ADKVLAILTVGMD--PLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 387 ~~g-----------~~~~~~~~~~~~~--~~~i~g~~~~~~~--~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
... ..+..+|.+++.+ +++|+|++++|.. +++..++ .+|+.+.+. ++++|||++|.+
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~-~ai~~~~~~~~l~~~~~~~Pt~~e~~ 459 (474)
T 1zmd_A 383 VGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGEMVNEAA-LALEYGASCEDIARVCHAHPTLSEAF 459 (474)
T ss_dssp EEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHH-HHHHHTCBHHHHHHSCCCTTCTHHHH
T ss_pred EEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhhCcCCCCCHHHHH
Confidence 110 1135689999887 5899999999983 4566666 899988876 799999999988
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=364.92 Aligned_cols=377 Identities=23% Similarity=0.317 Sum_probs=275.0
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCC----ccchh-----------------ccc-------
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV----KLSKQ-----------------LDI------- 93 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~~~----~~~~~-----------------~~~------- 93 (1466)
.++||+|||||+||++||..|++.|+++.|++.++. ...... ..++. ...
T Consensus 5 ~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~--~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 82 (470)
T 1dxl_A 5 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGA--LGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEI 82 (470)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS--SCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEE
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC--ccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccCCCcc
Confidence 468999999999999999999999998887664432 111000 00000 000
Q ss_pred Cccc-----------ccccChhhhhcCCeEEEeCceEEEeccccccEEEecCC--cEEecCEEEEccCCCCCCCCCCCCC
Q psy2951 94 KADS-----------ILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQADGV 160 (1466)
Q Consensus 94 ~~~~-----------~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~--~~~~~d~lviAtG~~~~~~~~~~~~ 160 (1466)
.... +...+..++++.+++++.++.+.. +....++.+.++ ..+.||+||+|||++|..++. ++.
T Consensus 83 ~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~--~~~~~~v~~~~G~~~~i~~d~lIiAtGs~p~~p~~-~g~ 159 (470)
T 1dxl_A 83 DLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFV--SPSEISVDTIEGENTVVKGKHIIIATGSDVKSLPG-VTI 159 (470)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEE--ETTEEEECCSSSCCEEEECSEEEECCCEEECCBTT-BCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEe--cCCEEEEEeCCCceEEEEcCEEEECCCCCCCCCCC-CCC
Confidence 0011 111123455667999999997753 334455555566 679999999999999886553 333
Q ss_pred CcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcE
Q psy2951 161 NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVK 240 (1466)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~ 240 (1466)
+.. .+.+..+...+.. .+++++|||+|++|+|+|..|++.|.+|+++++.+.+++ .+++++.+.+.+.+++.||+
T Consensus 160 ~~~-~v~~~~~~~~~~~---~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~-~~~~~~~~~l~~~l~~~gv~ 234 (470)
T 1dxl_A 160 DEK-KIVSSTGALALSE---IPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVP-TMDAEIRKQFQRSLEKQGMK 234 (470)
T ss_dssp CSS-SEECHHHHTTCSS---CCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHSSCC
T ss_pred Ccc-cEEeHHHhhhhhh---cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc-cccHHHHHHHHHHHHHcCCE
Confidence 220 1224555554432 468999999999999999999999999999999887764 68899999999999999999
Q ss_pred EEcCceEEEEEecCCCCeEEEEcC---CC--cEEeccEEEEeeccccCccc--cccCCceecCCccEEECCCCCcCCCCE
Q psy2951 241 FVMKANVSSFEKNEKNDVTAANLD---NG--TTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGV 313 (1466)
Q Consensus 241 i~~~~~v~~i~~~~~~~~~~v~~~---~g--~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~~~i 313 (1466)
++++++|.+++.+++ .+ .+.+. +| +++++|.||+|+|++||+++ ++..|++++++|+|.||+++||+.|+|
T Consensus 235 i~~~~~v~~i~~~~~-~~-~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t~~~~I 312 (470)
T 1dxl_A 235 FKLKTKVVGVDTSGD-GV-KLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILVNERFSTNVSGV 312 (470)
T ss_dssp EECSEEEEEEECSSS-SE-EEEEEESSSCCCEEEEESEEECCCCEEECCTTSCCTTTTCCBCSSSCBCCCTTCBCSSTTE
T ss_pred EEeCCEEEEEEEcCC-eE-EEEEEecCCCcceEEECCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECcCCccCCCCE
Confidence 999999999987542 22 23332 34 68999999999999999988 678899998889999999999999999
Q ss_pred EEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCCCC--CCCCCcccccccceeeEEEEeecCC-----ceEE
Q psy2951 314 YAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS--LSTIPFFWTMLFGVGFRFAGYAAGH-----TQVD 386 (1466)
Q Consensus 314 ya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~--~~~~p~~~s~~~~~~~~~~G~~~~~-----~~~~ 386 (1466)
||+|||+..+ ..+..|..||+.+|.||++.... +..+|+ ....+..+.++|..... .++.
T Consensus 313 ya~GD~~~~~-----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~--~~~~~~~~a~vG~~e~~a~~~g~~~~ 379 (470)
T 1dxl_A 313 YAIGDVIPGP-----------MLAHKAEEDGVACVEYLAGKVGHVDYDKVPG--VVYTNPEVASVGKTEEQVKETGVEYR 379 (470)
T ss_dssp EECSTTSSSC-----------CCHHHHHHHHHHHHHHHTTSCCCCCTTSCCE--EECSSSEEEEEECCHHHHHHTTCCEE
T ss_pred EEEeccCCCC-----------ccHHHHHHHHHHHHHHHcCCCcCCCCCCCCE--EEECCCceEEEcCCHHHHHhcCCcEE
Confidence 9999998753 34568999999999999986543 444553 33333456666654321 1121
Q ss_pred Eec-----------ccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 387 IVG-----------DLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 387 ~~g-----------~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
... ..+..+|.+++.+ +++|+|++++|. ++++..++ .+|+++.+. ++++|||++|.+
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~-~ai~~~~~~~~l~~~~~~~Pt~~e~~ 456 (470)
T 1dxl_A 380 VGKFPFMANSRAKAIDNAEGLVKIIAEKETDKILGVHIMAPNAGELIHEAA-IALQYDASSEDIARVCHAHPTMSEAI 456 (470)
T ss_dssp EEEEEGGGCHHHHHHSCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHH-HHHHTTCBHHHHHTSCCCSSCTTHHH
T ss_pred EEEEecccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhhcccCCCChHHHH
Confidence 110 0135689999886 689999999998 35666666 899999876 789999999988
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=364.45 Aligned_cols=391 Identities=23% Similarity=0.294 Sum_probs=281.2
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCC----CCCC---C-Cccc-----------------hhcccC--
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENF----LPYD---R-VKLS-----------------KQLDIK-- 94 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~----~~~~---~-~~~~-----------------~~~~~~-- 94 (1466)
.++||+|||||+||++||+.|++.|+++.|++...... .... . +..+ ..+...
T Consensus 2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~ 81 (476)
T 3lad_A 2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTG 81 (476)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEECS
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCCCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence 46899999999999999999999999988876543110 0000 0 0000 000000
Q ss_pred -----cc-----------cccccChhhhhcCCeEEEeCceEEEeccccccEEEecCC--cEEecCEEEEccCCCCCCCCC
Q psy2951 95 -----AD-----------SILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQ 156 (1466)
Q Consensus 95 -----~~-----------~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~--~~~~~d~lviAtG~~~~~~~~ 156 (1466)
.. .+...+..++++.+++++.++.+.. +....++...++ ..+.||+||+|||++|..+|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~--~~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~~~ 159 (476)
T 3lad_A 82 EVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLL--AGKKVEVTAADGSSQVLDTENVILASGSKPVEIPP 159 (476)
T ss_dssp CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEEC--STTCEEEECTTSCEEEECCSCEEECCCEEECCCTT
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEe--cCCEEEEEcCCCceEEEEcCEEEEcCCCCCCCCCC
Confidence 00 0111123445567999999987653 445566766666 579999999999999886664
Q ss_pred CCCC-CcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHH
Q psy2951 157 ADGV-NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFE 235 (1466)
Q Consensus 157 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~ 235 (1466)
.+.. ..++ +..+...+. ..+++++|||+|++|+|+|..+++.|.+|+++++.+.+++ .+++++.+.+.+.++
T Consensus 160 ~~~~~~~v~---~~~~~~~~~---~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~ 232 (476)
T 3lad_A 160 APVDQDVIV---DSTGALDFQ---NVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLP-AVDEQVAKEAQKILT 232 (476)
T ss_dssp SCCCSSSEE---EHHHHTSCS---SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-TSCHHHHHHHHHHHH
T ss_pred CCCCcccEE---echhhhccc---cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc-ccCHHHHHHHHHHHH
Confidence 4422 2233 233433322 3468999999999999999999999999999999887764 788999999999999
Q ss_pred hCCcEEEcCceEEEEEecCCCCeEEEEcCCC---cEEeccEEEEeeccccCccc--cccCCceecCCccEEECCCCCcCC
Q psy2951 236 SKGVKFVMKANVSSFEKNEKNDVTAANLDNG---TTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNV 310 (1466)
Q Consensus 236 ~~GV~i~~~~~v~~i~~~~~~~~~~v~~~~g---~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~ 310 (1466)
+.||+++++++|++++.+++ .+ .+.+.++ +++++|.||+|+|++|++++ ++..|++++++|+|.||++++|+.
T Consensus 233 ~~Gv~v~~~~~v~~i~~~~~-~~-~v~~~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~ 310 (476)
T 3lad_A 233 KQGLKILLGARVTGTEVKNK-QV-TVKFVDAEGEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDYCATSV 310 (476)
T ss_dssp HTTEEEEETCEEEEEEECSS-CE-EEEEESSSEEEEEEESEEEECSCEEECCTTCCSSCCSCCBCTTSCBCCCTTSBCSS
T ss_pred hCCCEEEECCEEEEEEEcCC-EE-EEEEEeCCCcEEEECCEEEEeeCCcccCCCCCccccCccccCCCCEeeCCCcccCC
Confidence 99999999999999987543 33 3444433 67999999999999999984 677889999999999999999999
Q ss_pred CCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCCC--CCCCCCcccccccceeeEEEEeecCC-----c
Q psy2951 311 PGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT--SLSTIPFFWTMLFGVGFRFAGYAAGH-----T 383 (1466)
Q Consensus 311 ~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~--~~~~~p~~~s~~~~~~~~~~G~~~~~-----~ 383 (1466)
|+|||+|||+..+ ..+..|..||+.+|+||++... .+..+|+ .......+..+|.+... .
T Consensus 311 ~~Iya~GD~~~~~-----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~--~~~~~~~~a~vGlte~~a~~~g~ 377 (476)
T 3lad_A 311 PGVYAIGDVVRGA-----------MLAHKASEEGVVVAERIAGHKAQMNYDLIPA--VIYTHPEIAGVGKTEQALKAEGV 377 (476)
T ss_dssp TTEEECGGGSSSC-----------CCHHHHHHHHHHHHHHHHHCCCCCCTTCCCE--EECSSSEEEEEECCHHHHHHTTC
T ss_pred CCEEEEEccCCCc-----------ccHHHHHHHHHHHHHHhcCCCcccCCCCCCE--EEECcCCEEEeeCCHHHHHhcCC
Confidence 9999999998654 2466899999999999998654 3445553 22223334555554311 1
Q ss_pred eEEE-----ecc------cCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchh
Q psy2951 384 QVDI-----VGD------LEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVV 443 (1466)
Q Consensus 384 ~~~~-----~g~------~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~ 443 (1466)
++.. ... .+..+|.+++.+ +++|+|++++|. +++++.++ .+|+++.+. ++++|||++|.
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~-~ai~~~~t~~~l~~~~~~hPt~~e~ 456 (476)
T 3lad_A 378 AINVGVFPFAASGRAMAANDTAGFVKVIADAKTDRVLGVHVIGPSAAELVQQGA-IAMEFGTSAEDLGMMVFAHPALSEA 456 (476)
T ss_dssp CEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHH-HHHHHTCBHHHHHTSCCCSSCSHHH
T ss_pred CEEEEEEeccccchheecCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCcHHHHhcCccCCCChHHH
Confidence 1111 000 135689998886 489999999998 55677776 999998876 79999999999
Q ss_pred h--cccCCCCccccCC
Q psy2951 444 L--GKLDYHGTITISP 457 (1466)
Q Consensus 444 ~--~~~~~~~~~~~~~ 457 (1466)
+ ++..+.++..|.+
T Consensus 457 ~~~~~~~~~~~~~~~~ 472 (476)
T 3lad_A 457 LHEAALAVSGHAIHVA 472 (476)
T ss_dssp HHHHHHHHTTCCTTCC
T ss_pred HHHHHHHHhccccccc
Confidence 9 5555555555543
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-35 Score=361.44 Aligned_cols=376 Identities=19% Similarity=0.249 Sum_probs=275.2
Q ss_pred CCCcEEEECCchHHHHHHHHHHh-cCCCCcEEEEc------CCCCCCCCC----Cccch----------------hccc-
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQ-NGFTGKLYFIT------DENFLPYDR----VKLSK----------------QLDI- 93 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~-~g~~v~i~~~~------~~~~~~~~~----~~~~~----------------~~~~- 93 (1466)
.++||+||||||||++||++|++ .|+++.|++.. +........ +..++ .+..
T Consensus 2 ~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~ 81 (490)
T 1fec_A 2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGWE 81 (490)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEE
T ss_pred ccccEEEECCCHHHHHHHHHHHHHcCCEEEEEecccccccccCCCcCccccCCCcchhhHHHHHHHHHHHHHHHHhcCcc
Confidence 35899999999999999999999 99998887610 011111000 00000 0000
Q ss_pred --------Ccccc-----------cccChhhhhcC-CeEEEeCceEEEeccccccEEEec-----CC---cEEecCEEEE
Q psy2951 94 --------KADSI-----------LLRTEEFYKDN-DIHVIKGKKIISDSELNEKKIKLQ-----DG---TSIDFTKIYL 145 (1466)
Q Consensus 94 --------~~~~~-----------~~~~~~~~~~~-~v~~~~~~~v~~~~~~~~~~v~~~-----~~---~~~~~d~lvi 145 (1466)
+...+ ...+...+++. +++++.++.+.. +. .++.+. ++ ..+.||+|||
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i--~~--~~v~v~~~~~~~g~~~~~~~~d~lvi 157 (490)
T 1fec_A 82 LDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQ--DN--HTVLVRESADPNSAVLETLDTEYILL 157 (490)
T ss_dssp CCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESEEEEE--ET--TEEEEESSSSTTSCEEEEEEEEEEEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeEEEEe--eC--CEEEEEeeccCCCCceEEEEcCEEEE
Confidence 00111 11223345677 999999986543 22 456553 56 6799999999
Q ss_pred ccCCCCCCCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhC---CCEEEEEeecCccccccc
Q psy2951 146 ATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASK---VKSVTVVGRGAVPFQESL 222 (1466)
Q Consensus 146 AtG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~---g~~Vtlv~~~~~~~~~~~ 222 (1466)
|||++|..++ +++.+.+ .+.++...+. ..+++++|||+|++|+|+|..++++ |.+|+++++.+.++ +.+
T Consensus 158 AtGs~p~~p~-i~g~~~~---~~~~~~~~~~---~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l-~~~ 229 (490)
T 1fec_A 158 ATGSWPQHLG-IEGDDLC---ITSNEAFYLD---EAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL-RGF 229 (490)
T ss_dssp CCCEEECCCC-SBTGGGC---BCHHHHTTCS---SCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS-TTS
T ss_pred eCCCCCCCCC-CCCccce---ecHHHHhhhh---hcCCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcc-ccc
Confidence 9999998554 5555432 2455554443 2467999999999999999999999 99999999998776 468
Q ss_pred CHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCCeEEEEcCCCcEEeccEEEEeeccccCcc-c-cccCCceecCCccE
Q psy2951 223 GKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTN-Y-LDGKGVELNGQKAV 300 (1466)
Q Consensus 223 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~-~-l~~~gl~~~~~g~i 300 (1466)
++++.+.+.+.++++||+++++++|++++.++++ ...+.+++|+++++|.||+|+|++|+++ + ++..|++++++|+|
T Consensus 230 d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~-~~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~I 308 (490)
T 1fec_A 230 DSELRKQLTEQLRANGINVRTHENPAKVTKNADG-TRHVVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAI 308 (490)
T ss_dssp CHHHHHHHHHHHHHTTEEEEETCCEEEEEECTTS-CEEEEETTSCEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCB
T ss_pred CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCC-EEEEEECCCcEEEcCEEEEccCCCcCccccCchhcCccCCCCCCE
Confidence 8999999999999999999999999999875432 3456778888999999999999999998 4 67889999988999
Q ss_pred EECCCCCcCCCCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCC---CCCCCCCcccccccceeeEEEE
Q psy2951 301 VVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK---TSLSTIPFFWTMLFGVGFRFAG 377 (1466)
Q Consensus 301 ~vd~~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~---~~~~~~p~~~s~~~~~~~~~~G 377 (1466)
.||+++||+.|+|||+|||++.+ ..+..|..||+.+|.||++.. ..+..+|+ .......+.++|
T Consensus 309 ~Vd~~~~t~~~~IyA~GD~~~~~-----------~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~--~~~~~~~~a~vG 375 (490)
T 1fec_A 309 KVDAYSKTNVDNIYAIGDVTDRV-----------MLTPVAINEGAAFVDTVFANKPRATDHTKVAC--AVFSIPPMGVCG 375 (490)
T ss_dssp CCCTTCBCSSTTEEECGGGGCSC-----------CCHHHHHHHHHHHHHHHHSSCCCCCCCSSCCE--EECCSSCEEEEE
T ss_pred EECCCCccCCCCEEEEeccCCCc-----------cCHHHHHHHHHHHHHHhcCCCCCcCCCCCccE--EEECCCCeEEEe
Confidence 99999999999999999998632 457789999999999999753 24455553 222233455666
Q ss_pred eecCC-----ceEE-----Eec------ccCCCeEE-EEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc----
Q psy2951 378 YAAGH-----TQVD-----IVG------DLEALKFT-AYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS---- 432 (1466)
Q Consensus 378 ~~~~~-----~~~~-----~~g------~~~~~~~~-~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~---- 432 (1466)
..... ..+. +.. ..+..+|. +++.+ +++|+|++++|. +++++.++ .+|+++.+.
T Consensus 376 ~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~~~i~~~~-~ai~~~~t~~~l~ 454 (490)
T 1fec_A 376 YVEEDAAKKYDQVAVYESSFTPLMHNISGSTYKKFMVRIVTNHADGEVLGVHMLGDSSPEIIQSVA-ICLKMGAKISDFY 454 (490)
T ss_dssp CCHHHHHHHCSEEEEEEEEECCHHHHHHSCTTCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHH-HHHHTTCBHHHHH
T ss_pred CCHHHHHhcCCCEEEEEeecChhhhhhhcCCCeEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHcCCCHHHHh
Confidence 54311 1111 111 11356788 88887 589999999998 34566666 899999876
Q ss_pred -ccccCcccchhh
Q psy2951 433 -LPHSHRCLGVVL 444 (1466)
Q Consensus 433 -~~~~~p~~~e~~ 444 (1466)
+++.|||++|.+
T Consensus 455 ~~~~~hPt~~e~~ 467 (490)
T 1fec_A 455 NTIGVHPTSAEEL 467 (490)
T ss_dssp TSCCCSSCSGGGG
T ss_pred ccccCCCCHHHHH
Confidence 799999999988
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=363.66 Aligned_cols=367 Identities=21% Similarity=0.274 Sum_probs=277.0
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCC----CCchhhc-----------------c--------
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV----KLSKQLD-----------------I-------- 1116 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~----~l~~~~~-----------------~-------- 1116 (1466)
+++|+|||||+||++||..|++.|. +|+|||+++.++.... ..++.+. .
T Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~g~--~V~lie~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~ 79 (468)
T 2qae_A 2 PYDVVVIGGGPGGYVASIKAAQLGM--KTACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGEGVTM 79 (468)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTC--CEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECGGGCEE
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC--eEEEEeCCCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccCCCCcc
Confidence 3689999999999999999999998 9999999875532100 0011000 0
Q ss_pred Ccccccc-----------cChhhhccCCcEEEcCCeEEEeecCCCCeEEecCC--cEEecCeEEEecCCCCCcCCCCCCC
Q psy2951 1117 KADSILL-----------RTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQADGV 1183 (1466)
Q Consensus 1117 ~~~~~~~-----------~~~~~~~~~~v~~~~~~~v~~i~d~~~~~v~~~~g--~~~~yd~lvlAtG~~~~~~~~~~g~ 1183 (1466)
....+.. ...+++++.+++++.++ +..+ ++....|.+.+| .++.||+||+|||++|+.|+++ |.
T Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~-~~~i-~~~~~~v~~~~G~~~~~~~d~lviAtG~~p~~p~~~-g~ 156 (468)
T 2qae_A 80 DSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGE-GSFE-TAHSIRVNGLDGKQEMLETKKTIIATGSEPTELPFL-PF 156 (468)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEE-EEEE-ETTEEEEEETTSCEEEEEEEEEEECCCEEECCBTTB-CC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEe-eCCEEEEEecCCceEEEEcCEEEECCCCCcCCCCCC-CC
Confidence 0000000 01234556789999998 5568 876666777777 7899999999999999999888 77
Q ss_pred C--cEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHH-HhC
Q psy2951 1184 N--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLF-ESK 1260 (1466)
Q Consensus 1184 ~--~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~-~~~ 1260 (1466)
+ +++ +.+++..+.+ .+++++|||+|++|+|+|..|++.|.+|+++++.+++++ .+++++.+.+.+.+ +++
T Consensus 157 ~~~~v~---t~~~~~~~~~---~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~~d~~~~~~l~~~l~~~~ 229 (468)
T 2qae_A 157 DEKVVL---SSTGALALPR---VPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAP-TLDEDVTNALVGALAKNE 229 (468)
T ss_dssp CSSSEE---CHHHHHTCSS---CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHHT
T ss_pred CcCcee---chHHHhhccc---CCceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCcccc-cCCHHHHHHHHHHHhhcC
Confidence 6 433 5667765542 479999999999999999999999999999999998886 68899999999999 999
Q ss_pred CcEEEcCceEEEEEecCCCcEEEEEcC--CC--CeeecCEEEEeeccccCccc--cccCCceeeCCCeEEeCCCccccCC
Q psy2951 1261 GVKFVMKANVSSFEKNEKNDVTAANLD--NG--TTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVP 1334 (1466)
Q Consensus 1261 gv~~~~~~~v~~i~~~~~g~~~~v~l~--~g--~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t~~~ 1334 (1466)
||+++++++|++++ .+++. ..+.+. +| +++++|.||+|+|..|++++ ++..|+.++.+|+|.||+++||+.|
T Consensus 230 gv~i~~~~~v~~i~-~~~~~-~~v~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~ 307 (468)
T 2qae_A 230 KMKFMTSTKVVGGT-NNGDS-VSLEVEGKNGKRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHFETSIP 307 (468)
T ss_dssp CCEEECSCEEEEEE-ECSSS-EEEEEECC---EEEEEESEEEECSCEEECCTTSCHHHHTCCBCTTSCBCCCTTSBCSST
T ss_pred CcEEEeCCEEEEEE-EcCCe-EEEEEEcCCCceEEEECCEEEECCCcccCCCCCCchhcCCccCCCCCEeECCCcccCCC
Confidence 99999999999998 33333 345554 67 68999999999999999997 6788999988889999999999999
Q ss_pred CEEEeccccc-CCCccCCCceeeeecHHHHHHHHHHHHHHhcCCCCC--CCCCccceeccccccEEEEeeCC-----CCc
Q psy2951 1335 GVYAGGDIAY-APLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS--LSTIPFFWTMLFGVGFRFAGYAA-----GHT 1406 (1466)
Q Consensus 1335 ~v~a~GD~a~-~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~~~--~~~~p~~w~~~~~~~~~~~g~~~-----~~~ 1406 (1466)
+|||+|||+. .|.. ++.|..||+.||.||+|...+ +..+|++ ..++..+-.+|..+ ...
T Consensus 308 ~IyA~GD~~~~~~~~-----------~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~--~~~~~~~a~vG~~e~~a~~~g~ 374 (468)
T 2qae_A 308 DVYAIGDVVDKGPML-----------AHKAEDEGVACAEILAGKPGHVNYGVIPAV--IYTMPEVASVGKSEDELKKEGV 374 (468)
T ss_dssp TEEECGGGBSSSCSC-----------HHHHHHHHHHHHHHHTTCCCCCCTTSCCEE--ECSSSEEEEEECCHHHHHHTTC
T ss_pred CEEEeeccCCCCCcc-----------HhHHHHHHHHHHHHHcCCCccCCCCCCCEE--EECCCceEEEeCCHHHHHhcCC
Confidence 9999999998 5443 378999999999999997655 4556644 44567788888752 111
Q ss_pred eEEEcC-----------CcCCceEEEEEEe--CCEEEEEEEecCc--HHHHHHHHHHHcCCCCChhcccc
Q psy2951 1407 QVDIVG-----------DLEALKFTAYYSN--ADKVLAILTVGMD--PLAAQFAERIKMQKYIQKDQIEN 1461 (1466)
Q Consensus 1407 ~~~~~~-----------~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 1461 (1466)
++.+-. .-+...|++++++ +++|+|+..+|.. ..+..+.-+|+.+ ++.++|++
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~--~~~~~l~~ 442 (468)
T 2qae_A 375 AYKVGKFPFNANSRAKAVSTEDGFVKVLVDKATDRILGVHIVCTTAGELIGEACLAMEYG--ASSEDVGR 442 (468)
T ss_dssp CEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTT--CBHHHHHT
T ss_pred CEEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC--CCHHHHhh
Confidence 222210 1124568888885 7999999999997 4456667778877 44555533
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=363.45 Aligned_cols=375 Identities=20% Similarity=0.268 Sum_probs=274.5
Q ss_pred CCcEEEECCchHHHHHHHHHHh-cCCCCcEEEEcC------CCCCCCC----CCccch----------------hccc--
Q psy2951 43 KDTFIVVGGGPSGATCVETLRQ-NGFTGKLYFITD------ENFLPYD----RVKLSK----------------QLDI-- 93 (1466)
Q Consensus 43 ~~dVvIIGgG~AGl~aA~~l~~-~g~~v~i~~~~~------~~~~~~~----~~~~~~----------------~~~~-- 93 (1466)
++||+||||||||++||+.|++ .|+++.|++... ....... .+..++ .+..
T Consensus 7 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~ 86 (495)
T 2wpf_A 7 AFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDHLRESAGFGWEF 86 (495)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBCBTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTTEEC
T ss_pred ccCEEEECCChhHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCeeecCCcchHHHHHHHHHHHHHHhHHHhcCccc
Confidence 5899999999999999999999 999988876100 1111000 000000 0000
Q ss_pred -------Cccccc-----------ccChhhhhcC-CeEEEeCceEEEeccccccEEEec---C-----CcEEecCEEEEc
Q psy2951 94 -------KADSIL-----------LRTEEFYKDN-DIHVIKGKKIISDSELNEKKIKLQ---D-----GTSIDFTKIYLA 146 (1466)
Q Consensus 94 -------~~~~~~-----------~~~~~~~~~~-~v~~~~~~~v~~~~~~~~~~v~~~---~-----~~~~~~d~lviA 146 (1466)
+..++. ..+...+++. +++++.++....+ .+++.+. + ++.+.||+||||
T Consensus 87 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~----~~~v~v~~~~~~~~~~~~~~~~d~lViA 162 (495)
T 2wpf_A 87 DGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLGWGSLES----KNVVVVRETADPKSAVKERLQADHILLA 162 (495)
T ss_dssp CGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEEESEEEEEE----TTEEEEESSSSTTSCEEEEEEEEEEEEC
T ss_pred CCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeEEEEee----CCEEEEeecCCccCCCCeEEEcCEEEEe
Confidence 001111 1122345567 9999999865432 3567775 4 567999999999
Q ss_pred cCCCCCCCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhC---CCEEEEEeecCcccccccC
Q psy2951 147 TGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASK---VKSVTVVGRGAVPFQESLG 223 (1466)
Q Consensus 147 tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~---g~~Vtlv~~~~~~~~~~~~ 223 (1466)
||++|+.++ +++.+.++ +.++...+. ..+++++|||+|++|+|+|..|+++ |.+||++++.+.++ +.++
T Consensus 163 TGs~p~~p~-i~G~~~~~---~~~~~~~~~---~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l-~~~d 234 (495)
T 2wpf_A 163 TGSWPQMPA-IPGIEHCI---SSNEAFYLP---EPPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLIL-RGFD 234 (495)
T ss_dssp CCEEECCCC-CTTGGGCE---EHHHHTTCS---SCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSC-TTSC
T ss_pred CCCCcCCCC-CCCccccc---cHHHHHhhh---hcCCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccc-cccC
Confidence 999998654 66654433 344544433 2467999999999999999999999 99999999988776 4688
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCCeEEEEcCCCcEEeccEEEEeeccccCccc--cccCCceecCCccEE
Q psy2951 224 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVV 301 (1466)
Q Consensus 224 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~~g~i~ 301 (1466)
+++.+.+.+.++++||+++++++|++++.++++ ...+.+.+|+++++|.||+|+|++||+++ ++..|++++++|+|.
T Consensus 235 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~-~~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~i~ 313 (495)
T 2wpf_A 235 ETIREEVTKQLTANGIEIMTNENPAKVSLNTDG-SKHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQ 313 (495)
T ss_dssp HHHHHHHHHHHHHTTCEEEESCCEEEEEECTTS-CEEEEETTSCEEEESEEEECSCEEECCGGGTGGGTTCCBCTTSSBC
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCc-eEEEEECCCcEEEcCEEEECCCCcccccccchhhcCccCCCCCCEE
Confidence 999999999999999999999999999875422 34577788889999999999999999984 678899999889999
Q ss_pred ECCCCCcCCCCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCC---CCCCCCCcccccccceeeEEEEe
Q psy2951 302 VNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK---TSLSTIPFFWTMLFGVGFRFAGY 378 (1466)
Q Consensus 302 vd~~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~---~~~~~~p~~~s~~~~~~~~~~G~ 378 (1466)
||+++||+.|+|||+|||+..+ ..+..|..||+.+|.||++.. ..+..+|+ .......+.++|.
T Consensus 314 Vd~~~~t~~~~IyA~GD~~~~~-----------~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~--~~~~~~~~a~vGl 380 (495)
T 2wpf_A 314 VDEFSRTNVPNIYAIGDITDRL-----------MLTPVAINEGAALVDTVFGNKPRKTDHTRVAS--AVFSIPPIGTCGL 380 (495)
T ss_dssp CCTTCBCSSTTEEECGGGGCSC-----------CCHHHHHHHHHHHHHHHHSSCCCCCCCSSCEE--EECCSSCEEEEEC
T ss_pred ECCCCccCCCCEEEEeccCCCc-----------cCHHHHHHHHHHHHHHhcCCCCCcCCCCCCCE--EEECCCCeEEEeC
Confidence 9999999999999999998643 456789999999999999753 23455553 1122334556665
Q ss_pred ecCC-----ceE-----EEec------ccCCCeE-EEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----
Q psy2951 379 AAGH-----TQV-----DIVG------DLEALKF-TAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS----- 432 (1466)
Q Consensus 379 ~~~~-----~~~-----~~~g------~~~~~~~-~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~----- 432 (1466)
.... ..+ .+.. ..+..+| .+++.+ +++|+|++++|. +++++.++ .+|+.+.+.
T Consensus 381 ~e~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~a~~~i~~~~-~ai~~~~t~~~l~~ 459 (495)
T 2wpf_A 381 IEEVAAKEFEKVAVYMSSFTPLMHNISGSKYKKFVAKIVTNHSDGTVLGVHLLGDGAPEIIQAVG-VCLRLNAKISDFYN 459 (495)
T ss_dssp CHHHHHHHSSEEEEEEEEECCTHHHHHSCTTCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHH-HHHHTTCBHHHHHH
T ss_pred CHHHHHhcCCCEEEEEEecCchhhhhhcCCCcEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhh
Confidence 4311 111 1111 1135678 888887 589999999998 34566666 899999876
Q ss_pred ccccCcccchhh
Q psy2951 433 LPHSHRCLGVVL 444 (1466)
Q Consensus 433 ~~~~~p~~~e~~ 444 (1466)
+++.|||++|.+
T Consensus 460 ~~~~hPt~~e~~ 471 (495)
T 2wpf_A 460 TIGVHPTSAEEL 471 (495)
T ss_dssp SCCCSSCSGGGG
T ss_pred cccCCCChHHHH
Confidence 799999999988
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-35 Score=359.35 Aligned_cols=370 Identities=21% Similarity=0.287 Sum_probs=273.3
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCc-----cc-----------------hhccc-------
Q psy2951 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK-----LS-----------------KQLDI------- 93 (1466)
Q Consensus 43 ~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~~~~-----~~-----------------~~~~~------- 93 (1466)
++||+|||||+||++||.+|++.|.++.|++.+. . . ..+. .+ ..+..
T Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~--~-G-G~~~~~gciP~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~ 79 (450)
T 1ges_A 4 HYDYIAIGGGSGGIASINRAAMYGQKCALIEAKE--L-G-GTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKF 79 (450)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC--T-T-HHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEE
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCCC--C-C-CcccccCccChHHHHHHHHHHHHHHHHHHhcCccCCCCcc
Confidence 5899999999999999999999999888876432 1 0 0000 00 00000
Q ss_pred Cccc-----------ccccChhhhhcCCeEEEeCceEEEeccccccEEEecCCcEEecCEEEEccCCCCCCCCCCCCCCc
Q psy2951 94 KADS-----------ILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNK 162 (1466)
Q Consensus 94 ~~~~-----------~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~~~~~ 162 (1466)
+... +...+...+++.+++++.++....+ .+++.+ +++++.||+||||||++|..++ +++.+.
T Consensus 80 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~----~~~v~~-~g~~~~~d~lviAtGs~p~~p~-i~g~~~ 153 (450)
T 1ges_A 80 NWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVD----AKTLEV-NGETITADHILIATGGRPSHPD-IPGVEY 153 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEE----TTEEEE-TTEEEEEEEEEECCCEEECCCC-STTGGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEec----CCEEEE-CCEEEEeCEEEECCCCCCCCCC-CCCccc
Confidence 0001 1111233456789999999875432 256777 6778999999999999988554 555543
Q ss_pred EEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEE
Q psy2951 163 VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFV 242 (1466)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~ 242 (1466)
..+..+...+. ..+++++|||+|++|+|+|..|++.|.+|+++++.+.++ +.+++++.+.+.+.+++.||+++
T Consensus 154 ---~~~~~~~~~~~---~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-~~~~~~~~~~l~~~l~~~Gv~i~ 226 (450)
T 1ges_A 154 ---GIDSDGFFALP---ALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPL-PSFDPMISETLVEVMNAEGPQLH 226 (450)
T ss_dssp ---SBCHHHHHHCS---SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-TTSCHHHHHHHHHHHHHHSCEEE
T ss_pred ---eecHHHhhhhh---hcCCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchh-hhhhHHHHHHHHHHHHHCCCEEE
Confidence 23555555543 236899999999999999999999999999999987766 46889999999999999999999
Q ss_pred cCceEEEEEecCCCCeEEEEcCCCcEEeccEEEEeeccccCccc--cccCCceecCCccEEECCCCCcCCCCEEEecccc
Q psy2951 243 MKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA 320 (1466)
Q Consensus 243 ~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD~~ 320 (1466)
++++|++++.++++ ...+.+++|+++++|.||+|+|++|++++ ++..|++++++|+|.||+++||+.|+|||+|||+
T Consensus 227 ~~~~v~~i~~~~~~-~~~v~~~~g~~i~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~~~t~~~~IyA~GD~~ 305 (450)
T 1ges_A 227 TNAIPKAVVKNTDG-SLTLELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNT 305 (450)
T ss_dssp CSCCEEEEEECTTS-CEEEEETTSCEEEESEEEECSCEEESCTTSCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECSGGG
T ss_pred eCCEEEEEEEeCCc-EEEEEECCCcEEEcCEEEECCCCCcCCCCCCchhcCceECCCCCEeECCCCccCCCCEEEEeccC
Confidence 99999999875432 24567788889999999999999999983 5778899998899999999999999999999998
Q ss_pred cccCccCCCCcceeccHHHHHHHHHHHHHHhcCCC----CCCCCCCcccccccceeeEEEEeecCC-------ceEEEe-
Q psy2951 321 YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK----TSLSTIPFFWTMLFGVGFRFAGYAAGH-------TQVDIV- 388 (1466)
Q Consensus 321 ~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~----~~~~~~p~~~s~~~~~~~~~~G~~~~~-------~~~~~~- 388 (1466)
+.+ ..+..|..||+.+|.||++.. .++..+|+.. .....+..+|..... ..+...
T Consensus 306 ~~~-----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~--~~~~~~a~vG~~e~~a~~~~g~~~~~~~~ 372 (450)
T 1ges_A 306 GAV-----------ELTPVAVAAGRRLSERLFNNKPDEHLDYSNIPTVV--FSHPPIGTVGLTEPQAREQYGDDQVKVYK 372 (450)
T ss_dssp TSC-----------CCHHHHHHHHHHHHHHHHTTCTTCCCCCSSCCEEE--CCSSCEEEEECCHHHHHHHHCGGGEEEEE
T ss_pred CCC-----------ccHHHHHHHHHHHHHHHcCCCCcccCCCCCCCeEE--ECCCceEEEeCCHHHHHhcCCCCcEEEEE
Confidence 643 356789999999999999753 2455566421 112234455543211 112111
Q ss_pred ------c----ccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 389 ------G----DLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 389 ------g----~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
+ ..+..+|.+++.+ +++|+|++++|. +++++.++ .+|+++.+. ++++|||++|.+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~-~ai~~~~t~~~l~~~~~~hPt~~e~~ 446 (450)
T 1ges_A 373 SSFTAMYTAVTTHRQPCRMKLVCVGSEEKIVGIHGIGFGMDEMLQGFA-VALKMGATKKDFDNTVAIHPTAAEEF 446 (450)
T ss_dssp EEEECHHHHTSSSCCEEEEEEEEETTTTEEEEEEEESTTHHHHHHHHH-HHHHTTCBHHHHHTSCCCSSCSGGGG
T ss_pred EECchhhHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhcCccCCCChHHHH
Confidence 0 1135678888886 589999999998 44566666 899999876 799999999987
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-35 Score=360.77 Aligned_cols=366 Identities=23% Similarity=0.309 Sum_probs=274.3
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCC---C-CCchhhc-----------------------cCc
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR---V-KLSKQLD-----------------------IKA 1118 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~---~-~l~~~~~-----------------------~~~ 1118 (1466)
+++|+|||||+||++||.+|++.|. +|+|||++ .++... . ..++.+. ...
T Consensus 3 ~~dvvIIGgG~aGl~aA~~l~~~g~--~V~lie~~-~~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 79 (455)
T 1ebd_A 3 ETETLVVGAGPGGYVAAIRAAQLGQ--KVTIVEKG-NLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDF 79 (455)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTC--CEEEEESS-CTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECH
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCC--eEEEEECC-CCCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCcccCCCccCH
Confidence 3689999999999999999999998 99999997 322100 0 0011000 000
Q ss_pred ccccc-----------cChhhhccCCcEEEcCCeEEEeecCCCCeEEecCC-cEEecCeEEEecCCCCCcCCCCCCCCcE
Q psy2951 1119 DSILL-----------RTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDG-TSIDFTKIYLATGSSPRTISQADGVNKV 1186 (1466)
Q Consensus 1119 ~~~~~-----------~~~~~~~~~~v~~~~~~~v~~i~d~~~~~v~~~~g-~~~~yd~lvlAtG~~~~~~~~~~g~~~v 1186 (1466)
..+.. ...+++++.+++++.++ +..+ ++....|.+.+| .++.||+||+|||++|+.|+++ |.+..
T Consensus 80 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~-~~~i-d~~~v~V~~~~G~~~i~~d~lViATGs~p~~~~~~-g~~~~ 156 (455)
T 1ebd_A 80 AKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGE-AYFV-DANTVRVVNGDSAQTYTFKNAIIATGSRPIELPNF-KFSNR 156 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTCEEEESE-EEEE-ETTEEEEEETTEEEEEECSEEEECCCEEECCBTTB-CCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEc-cCCeEEEEeCCCcEEEEeCEEEEecCCCCCCCCCC-Cccce
Confidence 00000 01235567799999998 4558 876666777777 6899999999999999999888 77632
Q ss_pred EEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEc
Q psy2951 1187 FYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVM 1266 (1466)
Q Consensus 1187 ~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~ 1266 (1466)
+.+.+++..+. ..+++++|||+|++|+|+|..|++.|.+|+++++.+++++ .+++++.+.+.+.+++.||++++
T Consensus 157 --v~~~~~~~~~~---~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~gv~i~~ 230 (455)
T 1ebd_A 157 --ILDSTGALNLG---EVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILS-GFEKQMAAIIKKRLKKKGVEVVT 230 (455)
T ss_dssp --EECHHHHHTCS---SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-TSCHHHHHHHHHHHHHTTCEEEE
T ss_pred --EecHHHHhccc---cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc-ccCHHHHHHHHHHHHHCCCEEEe
Confidence 33566765543 2479999999999999999999999999999999988876 57899999999999999999999
Q ss_pred CceEEEEEecCCCcEEEEEcC---CCCeeecCEEEEeeccccCccc--cccCCceeeCCCeEEeCCCccccCCCEEEecc
Q psy2951 1267 KANVSSFEKNEKNDVTAANLD---NGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGD 1341 (1466)
Q Consensus 1267 ~~~v~~i~~~~~g~~~~v~l~---~g~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD 1341 (1466)
+++|++++ .+++. ..+.+. +++++++|.||+|+|..|++++ ++.+|+.++.+|+|.||+++||+.|+|||+||
T Consensus 231 ~~~v~~i~-~~~~~-~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD 308 (455)
T 1ebd_A 231 NALAKGAE-EREDG-VTVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNIFAIGD 308 (455)
T ss_dssp SEEEEEEE-EETTE-EEEEEEETTEEEEEEESEEEECSCEEESCSSSSTTTTTCCBCTTSCBCCCTTCBCSSTTEEECGG
T ss_pred CCEEEEEE-EeCCe-EEEEEEeCCceeEEEcCEEEECcCCCcccCcCChhhcCCccCCCCCEeeCCCcccCCCCEEEEec
Confidence 99999998 33322 345543 4578999999999999999997 67889999888899999999999999999999
Q ss_pred cccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCCCCC--CCCCccceeccccccEEEEeeCC-----CCceEEEcC--
Q psy2951 1342 IAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS--LSTIPFFWTMLFGVGFRFAGYAA-----GHTQVDIVG-- 1412 (1466)
Q Consensus 1342 ~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~~~--~~~~p~~w~~~~~~~~~~~g~~~-----~~~~~~~~~-- 1412 (1466)
|+..|.. ++.|..||+.||.||+|...+ |..+|+ ...++..+-.+|..+ ...++.+-.
T Consensus 309 ~~~~~~~-----------~~~A~~~g~~aa~~i~~~~~~~~~~~~p~--~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~ 375 (455)
T 1ebd_A 309 IVPGPAL-----------AHKASYEGKVAAEAIAGHPSAVDYVAIPA--VVFSDPECASVGYFEQQAKDEGIDVIAAKFP 375 (455)
T ss_dssp GSSSCCC-----------HHHHHHHHHHHHHHHTSCCCCCCCSCCCE--EECSSSCEEEEECCHHHHHTTTCCEEEEEEE
T ss_pred cCCCccc-----------HHHHHHHHHHHHHHHcCCCccCCCCCCCE--EEECCCceEEEeCCHHHHHhcCCCEEEEEEE
Confidence 9986543 378999999999999997655 445664 444567787888742 111222211
Q ss_pred ---------CcCCceEEEEEEe--CCEEEEEEEecCc--HHHHHHHHHHHcCCCCChhccc
Q psy2951 1413 ---------DLEALKFTAYYSN--ADKVLAILTVGMD--PLAAQFAERIKMQKYIQKDQIE 1460 (1466)
Q Consensus 1413 ---------~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 1460 (1466)
.-+...|++++++ +++|+|+..+|.. ..+..+.-+|+.+ ++.++|+
T Consensus 376 ~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~--~~~~~l~ 434 (455)
T 1ebd_A 376 FAANGRALALNDTDGFLKLVVRKEDGVIIGAQIIGPNASDMIAELGLAIEAG--MTAEDIA 434 (455)
T ss_dssp GGGCHHHHHHTCCCCEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHHT--CBHHHHH
T ss_pred cCcchHHhhcCCCcEEEEEEEECCCCEEEEEEEeCCCHHHHHHHHHHHHHCC--CCHHHHh
Confidence 0124568888885 7999999999997 3456666677777 3445553
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-35 Score=356.71 Aligned_cols=370 Identities=21% Similarity=0.261 Sum_probs=273.9
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCc-----cch----------------hccc-------
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK-----LSK----------------QLDI------- 93 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~~~~-----~~~----------------~~~~------- 93 (1466)
+++||+|||||+||++||.+|++.|.++.|++.+. . . ..+. .++ .+..
T Consensus 3 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~--~-G-G~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~~~~~ 78 (463)
T 2r9z_A 3 QHFDLIAIGGGSGGLAVAEKAAAFGKRVALIESKA--L-G-GTCVNVGCVPKKVMWYASHLAEAVRDAPGFGVQASGGTL 78 (463)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC--T-T-HHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTBCCC---C
T ss_pred ccCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCCC--C-C-CcCcCcCchhHHHHHHHHHHHHHHhhhhhcCcccCCCCc
Confidence 35899999999999999999999999888876432 1 0 0000 000 0000
Q ss_pred Ccc-----------cccccChhhhhcCCeEEEeCceEEEeccccccEEEecCCcEEecCEEEEccCCCCCCCCCCCCCCc
Q psy2951 94 KAD-----------SILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNK 162 (1466)
Q Consensus 94 ~~~-----------~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~~~~~ 162 (1466)
+.. .+...+...+++.+++++.++....+ .+++.+ ++.++.||+||+|||++|..++ +++.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~----~~~v~~-~g~~~~~d~lviAtGs~p~~p~-i~G~~~ 152 (463)
T 2r9z_A 79 DWPRLVAGRDRYIGAINSFWDGYVERLGITRVDGHARFVD----AHTIEV-EGQRLSADHIVIATGGRPIVPR-LPGAEL 152 (463)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEE----TTEEEE-TTEEEEEEEEEECCCEEECCCS-CTTGGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeEEEEcc----CCEEEE-CCEEEEcCEEEECCCCCCCCCC-CCCccc
Confidence 000 11112233456789999999865432 356777 6678999999999999988554 555543
Q ss_pred EEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEE
Q psy2951 163 VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFV 242 (1466)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~ 242 (1466)
..+..+...+.. .+++++|||+|++|+|+|..|++.|.+|+++++.+.++ +.+++++.+.+.+.+++.||+++
T Consensus 153 ---~~~~~~~~~~~~---~~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l-~~~~~~~~~~l~~~l~~~gv~i~ 225 (463)
T 2r9z_A 153 ---GITSDGFFALQQ---QPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLL-FQFDPLLSATLAENMHAQGIETH 225 (463)
T ss_dssp ---SBCHHHHHHCSS---CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-TTSCHHHHHHHHHHHHHTTCEEE
T ss_pred ---eecHHHHhhhhc---cCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccc-cccCHHHHHHHHHHHHHCCCEEE
Confidence 234555555432 36799999999999999999999999999999988766 46789999999999999999999
Q ss_pred cCceEEEEEecCCCCeEEEEcCCCc-EEeccEEEEeeccccCccc--cccCCceecCCccEEECCCCCcCCCCEEEeccc
Q psy2951 243 MKANVSSFEKNEKNDVTAANLDNGT-TIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 319 (1466)
Q Consensus 243 ~~~~v~~i~~~~~~~~~~v~~~~g~-~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD~ 319 (1466)
++++|++++.++++ ..+.+++|+ ++++|.||+|+|++|++++ ++..|++++++|+|.||++++|+.|+|||+|||
T Consensus 226 ~~~~v~~i~~~~~~--~~v~~~~G~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~ 303 (463)
T 2r9z_A 226 LEFAVAALERDAQG--TTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAYQNTNVPGVYALGDI 303 (463)
T ss_dssp SSCCEEEEEEETTE--EEEEETTCCEEEEESEEEECSCEEESCTTSCHHHHTCCCCTTSCCCCCTTSBCSSTTEEECGGG
T ss_pred eCCEEEEEEEeCCe--EEEEEeCCcEEEEcCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECCCCccCCCCEEEEeec
Confidence 99999999865422 457778888 8999999999999999974 467789998889999999999999999999999
Q ss_pred ccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCC----CCCCCCCcccccccceeeEEEEeecCC------ceEEE--
Q psy2951 320 AYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK----TSLSTIPFFWTMLFGVGFRFAGYAAGH------TQVDI-- 387 (1466)
Q Consensus 320 ~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~----~~~~~~p~~~s~~~~~~~~~~G~~~~~------~~~~~-- 387 (1466)
++.+ ..+..|..||+.+|.||++.. ..+..+|+.. .....+.++|..... ..+..
T Consensus 304 ~~~~-----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~~--~~~~~~a~vGl~e~~a~~~~g~~~~~~~ 370 (463)
T 2r9z_A 304 TGRD-----------QLTPVAIAAGRRLAERLFDGQSERKLDYDNIPTVV--FAHPPLSKVGLSEPEARERLGDVLTVYE 370 (463)
T ss_dssp GTSC-----------CCHHHHHHHHHHHHHHHHSCCTTCCCCCSSCCEEE--CCSSCEEEEECCHHHHHHHHCSCEEEEE
T ss_pred CCCc-----------ccHHHHHHHHHHHHHHHcCCCCcccCCCCCCCEEE--eCCCCeEEEcCCHHHHHhcCCCCEEEEE
Confidence 8643 456789999999999999754 3455666421 112234455543210 11211
Q ss_pred ---e--c----ccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 388 ---V--G----DLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 388 ---~--g----~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
. + ..+..+|.+++.+ +++|+|++++|. ++++..++ .+|+++.+. +++.|||++|.+
T Consensus 371 ~~~~~~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~a~~~i~~~~-~ai~~~~t~~~l~~~~~~hPt~~e~~ 444 (463)
T 2r9z_A 371 TSFTPMRYALNEHGPKTAMKLVCAGPEQRVVGVHVIGDGADEMLQGFA-VAVKMGATKADFDNTVAIHPGSAEEL 444 (463)
T ss_dssp EEECCGGGTTSSSCCCEEEEEEEETTTTEEEEEEEESTTGGGTSHHHH-HHHHTTCBHHHHHTSCCCSSSSGGGG
T ss_pred EEcccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhcCccCCCCHHHHH
Confidence 1 0 1135678888886 589999999998 45666666 899999876 799999999998
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-34 Score=358.10 Aligned_cols=369 Identities=24% Similarity=0.300 Sum_probs=281.6
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCC----CCchhhccC---------------ccccccc-
Q psy2951 1065 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV----KLSKQLDIK---------------ADSILLR- 1124 (1466)
Q Consensus 1065 ~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~----~l~~~~~~~---------------~~~~~~~- 1124 (1466)
.+++|||||||+||++||..|++.|. +|+|||+++.++.... ..++.+... ...+..+
T Consensus 42 ~~~dVvIIGgG~aGl~aA~~l~~~G~--~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 119 (523)
T 1mo9_A 42 REYDAIFIGGGAAGRFGSAYLRAMGG--RQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKV 119 (523)
T ss_dssp SCBSEEEECCSHHHHHHHHHHHHTTC--CEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCC--CEEEEeCCCCCCCcccccCcCchHHHHHHHHHHHHHhhhhhcCcHHHHHhhh
Confidence 45789999999999999999999998 9999999874331100 001110000 0011000
Q ss_pred -------------Ch---hhh-----ccCCcEEEcCCeEEEeecCCCCeEEecCCcEEecCeEEEecCCCCCcCCCCCCC
Q psy2951 1125 -------------TE---EFY-----KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGV 1183 (1466)
Q Consensus 1125 -------------~~---~~~-----~~~~v~~~~~~~v~~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~ 1183 (1466)
.. +++ .+.++++++..++..+ ++ ++|.+. +..+.||+||+|||++|+.|+++ |.
T Consensus 120 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i-~~--~~v~~~-g~~~~~d~lViATGs~p~~p~i~-G~ 194 (523)
T 1mo9_A 120 VGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVI-DN--HTVEAA-GKVFKAKNLILAVGAGPGTLDVP-GV 194 (523)
T ss_dssp CCHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEE-ET--TEEEET-TEEEEBSCEEECCCEECCCCCST-TT
T ss_pred hhHHHHHHHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEe-eC--CEEEEC-CEEEEeCEEEECCCCCCCCCCCC-Cc
Confidence 12 455 6779999845569999 75 678876 77899999999999999999998 87
Q ss_pred C--cEEEecCHHHHH-hhhcccCCCCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhC
Q psy2951 1184 N--KVFYLRTVEDAN-NIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESK 1260 (1466)
Q Consensus 1184 ~--~v~~~~~~~~~~-~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~ 1260 (1466)
+ ++++ .+++. .+.. .++++++|||+|++|+|+|..+++.|.+|+++++.+.+++ .+++++.+.+.+.++++
T Consensus 195 ~~~~v~~---~~~~~~~l~~--~~g~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~ 268 (523)
T 1mo9_A 195 NAKGVFD---HATLVEELDY--EPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKL-IKDNETRAYVLDRMKEQ 268 (523)
T ss_dssp TSBTEEE---HHHHHHHCCS--CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT-CCSHHHHHHHHHHHHHT
T ss_pred ccCcEee---HHHHHHHHHh--cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcccc-cccHHHHHHHHHHHHhC
Confidence 7 4654 44554 3332 1249999999999999999999999999999999998876 57899999999999999
Q ss_pred CcEEEcCceEEEEEecCCCcE--EEEEcCCCC-eeecCEEEEeeccccCcc-ccccCCceeeCCCeEEeCCCccccCCCE
Q psy2951 1261 GVKFVMKANVSSFEKNEKNDV--TAANLDNGT-TIPADLVIVGIGTVLNTN-YLDGKGVELNGQKAVVVNEYLETNVPGV 1336 (1466)
Q Consensus 1261 gv~~~~~~~v~~i~~~~~g~~--~~v~l~~g~-~i~~D~vv~a~G~~p~~~-~~~~~gl~~~~~G~i~vd~~~~t~~~~v 1336 (1466)
||+++++++|++++..+++++ ..|.+.+|+ ++++|.||+|+|..|+++ +++.+|+.++.+|+|.||+++||+.|+|
T Consensus 269 GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~~~~l~~~gl~~~~~G~i~Vd~~~~t~~~~I 348 (523)
T 1mo9_A 269 GMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELAKILGLDLGPKGEVLVNEYLQTSVPNV 348 (523)
T ss_dssp TCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEECCHHHHHHHTCCBCTTSCBCCCTTSBCSSTTE
T ss_pred CcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccCCccCHHHcCCccCCCCCEEECCCCccCCCCE
Confidence 999999999999983234443 457888887 899999999999999999 8999999998889999999999999999
Q ss_pred EEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCCCCC--CCCCccceeccccccEEEEeeCC------CCceE
Q psy2951 1337 YAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS--LSTIPFFWTMLFGVGFRFAGYAA------GHTQV 1408 (1466)
Q Consensus 1337 ~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~~~--~~~~p~~w~~~~~~~~~~~g~~~------~~~~~ 1408 (1466)
||+|||+..|.. ++.|..||++||.||+|...+ +..+|++|. ++..+..+|..+ +.+-.
T Consensus 349 yA~GD~~~~~~~-----------~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~--~~~~~a~vG~~e~~a~~~g~~~~ 415 (523)
T 1mo9_A 349 YAVGDLIGGPME-----------MFKARKSGCYAARNVMGEKISYTPKNYPDFLH--THYEVSFLGMGEEEARAAGHEIV 415 (523)
T ss_dssp EECGGGGCSSCS-----------HHHHHHHHHHHHHHHTTCCCCCCCCSCCEEEE--SSSEEEEEECCHHHHHHTTCCEE
T ss_pred EEEeecCCCccc-----------HHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEE--CCCceEEEeCCHHHHHhCCCCEE
Confidence 999999986643 378999999999999996654 567887764 456788888753 22211
Q ss_pred EEc--C-C-----------------------cCCceEEEEEEe--CCEEEEEEEecCc-H-HHHHHHHHHHcCCCCChhc
Q psy2951 1409 DIV--G-D-----------------------LEALKFTAYYSN--ADKVLAILTVGMD-P-LAAQFAERIKMQKYIQKDQ 1458 (1466)
Q Consensus 1409 ~~~--~-~-----------------------~~~~~~~~~~~~--~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~ 1458 (1466)
+.. - + .+...|++.+++ +++|+|+..+|.. . .+..+.-+|+.+ ++.++
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~--~t~~~ 493 (523)
T 1mo9_A 416 TIKMPPDTENGLNVALPASDRTMLYAFGKGTAHMSGFQKIVIDAKTRKVLGAHHVGYGAKDAFQYLNVLIKQG--LTVDE 493 (523)
T ss_dssp EEEESCCSTTTTCSSCSCCTTTHHHHHSTTTGGGGCEEEEEEETTTCBEEEEEEEESSCHHHHHHHHHHHHTT--CBHHH
T ss_pred EEEEecccccccccccccccccccceEEeecCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC--CCHHH
Confidence 111 0 1 123458888774 6899999999995 2 356677788887 45555
Q ss_pred ccc
Q psy2951 1459 IEN 1461 (1466)
Q Consensus 1459 ~~~ 1461 (1466)
|++
T Consensus 494 l~~ 496 (523)
T 1mo9_A 494 LGD 496 (523)
T ss_dssp HHT
T ss_pred HHh
Confidence 543
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-36 Score=367.91 Aligned_cols=366 Identities=19% Similarity=0.304 Sum_probs=272.3
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCC----Cchhhc-----------------c--------
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK----LSKQLD-----------------I-------- 1116 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~----l~~~~~-----------------~-------- 1116 (1466)
+++|+|||||+||+++|..|++.|. +|+|||+++.++..... .++.+. .
T Consensus 5 ~~dVvIIGgG~aGl~aA~~l~~~G~--~V~liE~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~ 82 (478)
T 1v59_A 5 SHDVVIIGGGPAGYVAAIKAAQLGF--NTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKI 82 (478)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTC--CEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEEE
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCC--eEEEEecCCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCcc
Confidence 3689999999999999999999998 99999997654311000 001000 0
Q ss_pred Cccccc-----------ccChhhhccCCcEEEcCCeEEEeecCCCCeEEecCC--cE------EecCeEEEecCCCCCcC
Q psy2951 1117 KADSIL-----------LRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDG--TS------IDFTKIYLATGSSPRTI 1177 (1466)
Q Consensus 1117 ~~~~~~-----------~~~~~~~~~~~v~~~~~~~v~~i~d~~~~~v~~~~g--~~------~~yd~lvlAtG~~~~~~ 1177 (1466)
+...+. ....+++++.+++++.++.+ .+ +.....|.+.+| .+ +.||+||+|||++|+.
T Consensus 83 ~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~-~~-~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAtGs~p~~- 159 (478)
T 1v59_A 83 NVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGS-FE-DETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTP- 159 (478)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEE-ES-SSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEEECC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-Ec-cCCeEEEEecCCCcccccccceEEeCEEEECcCCCCCC-
Confidence 000000 00123456679999999843 45 655555666666 56 9999999999998854
Q ss_pred CCCCCCC--cEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHH
Q psy2951 1178 SQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITK 1255 (1466)
Q Consensus 1178 ~~~~g~~--~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~ 1255 (1466)
+| |.+ + ..+.+.+++..+.+ .+++++|||+|++|+|+|..|++.|.+|+++++.+++++ .+++++.+.+.+
T Consensus 160 -~~-g~~~~~-~~v~~~~~~~~~~~---~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~ 232 (478)
T 1v59_A 160 -FP-GIEIDE-EKIVSSTGALSLKE---IPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGA-SMDGEVAKATQK 232 (478)
T ss_dssp -CT-TCCCCS-SSEECHHHHTTCSS---CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSS-SSCHHHHHHHHH
T ss_pred -CC-CCCCCC-ceEEcHHHHHhhhc---cCceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcccc-ccCHHHHHHHHH
Confidence 34 443 3 22346677755543 379999999999999999999999999999999998887 788999999999
Q ss_pred HHHhCCcEEEcCceEEEEEecCCCcEEEEEcC-----CCCeeecCEEEEeeccccCcc--ccccCCceeeCCCeEEeCCC
Q psy2951 1256 LFESKGVKFVMKANVSSFEKNEKNDVTAANLD-----NGTTIPADLVIVGIGTVLNTN--YLDGKGVELNGQKAVVVNEY 1328 (1466)
Q Consensus 1256 ~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~-----~g~~i~~D~vv~a~G~~p~~~--~~~~~gl~~~~~G~i~vd~~ 1328 (1466)
.+++.||+++++++|++++..+++....|.+. +++++++|.||+|+|..|+++ +++..|+.++.+|+|.||++
T Consensus 233 ~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~ 312 (478)
T 1v59_A 233 FLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQ 312 (478)
T ss_dssp HHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECCTTSCTTTTTCCBCTTSCBCCCTT
T ss_pred HHHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCCCCCCchhcCceeCCCCCEeECcC
Confidence 99999999999999999982113444556665 457899999999999999998 78999999988899999999
Q ss_pred ccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCCCC--CCCCCccceeccccccEEEEeeCC---
Q psy2951 1329 LETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT--SLSTIPFFWTMLFGVGFRFAGYAA--- 1403 (1466)
Q Consensus 1329 ~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~~--~~~~~p~~w~~~~~~~~~~~g~~~--- 1403 (1466)
+||+.|+|||+|||+..|.. ++.|..||+.||.||+|... .|..+|++|.. +..+-.+|..+
T Consensus 313 ~~t~~~~IyA~GD~~~~~~~-----------~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~--~~~~a~vG~~e~~a 379 (478)
T 1v59_A 313 FNSKFPHIKVVGDVTFGPML-----------AHKAEEEGIAAVEMLKTGHGHVNYNNIPSVMYS--HPEVAWVGKTEEQL 379 (478)
T ss_dssp SBCSSTTEEECGGGSSSCCC-----------HHHHHHHHHHHHHHHHHSCCCCCTTSCCEEECS--SSEEEEEECCHHHH
T ss_pred CccCCCCEEEeeccCCCccc-----------HHHHHHHHHHHHHHHcCCCCCCCCCCCCEEEEc--CCcEEEEECCHHHH
Confidence 99999999999999986543 37899999999999998654 47788988864 34566667642
Q ss_pred --CCceEEE-------------cCCcCCceEEEEEEe--CCEEEEEEEecCc--HHHHHHHHHHHcCCCCChhccc
Q psy2951 1404 --GHTQVDI-------------VGDLEALKFTAYYSN--ADKVLAILTVGMD--PLAAQFAERIKMQKYIQKDQIE 1460 (1466)
Q Consensus 1404 --~~~~~~~-------------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 1460 (1466)
...++.+ .+ +...|++++++ +++++|+..+|.. ..+..+..+|+.+. +.++|+
T Consensus 380 ~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~~i~~~~--~~~~l~ 451 (478)
T 1v59_A 380 KEAGIDYKIGKFPFAANSRAKTNQ--DTEGFVKILIDSKTERILGAHIIGPNAGEMIAEAGLALEYGA--SAEDVA 451 (478)
T ss_dssp HHTTCCEEEEEEEGGGCHHHHHTT--CCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTC--BHHHHH
T ss_pred HHcCCCEEEEEEecccchhhhhcC--CCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCC--CHHHHh
Confidence 1111221 12 23456666664 7999999999996 44678888888884 444443
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-35 Score=356.86 Aligned_cols=373 Identities=16% Similarity=0.209 Sum_probs=276.9
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCC----Cccc----------------hhcc-------cC
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR----VKLS----------------KQLD-------IK 94 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~~----~~~~----------------~~~~-------~~ 94 (1466)
.++||+||||||||++||+.|++.|+++.|++... ..... +..+ ..+. ..
T Consensus 4 ~~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk~~---~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 80 (463)
T 4dna_A 4 FDYDLFVIGGGSGGVRSGRLAAALGKKVAIAEEFR---YGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGESRFD 80 (463)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC---TTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEECCCEEC
T ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCEEEEEeCCC---CCCcccccCchhhHHHHHHHHHHHHHHHHHhcCcccCCCCcC
Confidence 35899999999999999999999999988876521 11000 0000 0000 00
Q ss_pred -----------cccccccChhhhhcCCeEEEeCceEEEeccccccEEEe-cCCcEEecCEEEEccCCCCCCCCCCCCCCc
Q psy2951 95 -----------ADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKL-QDGTSIDFTKIYLATGSSPRTISQADGVNK 162 (1466)
Q Consensus 95 -----------~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~-~~~~~~~~d~lviAtG~~~~~~~~~~~~~~ 162 (1466)
...+...+..++++.+++++.+..... +..++.+ .++..+.||+||+|||++|...|.+++.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i----~~~~v~~~~~~~~~~~d~lviAtG~~p~~~p~i~G~~~ 156 (463)
T 4dna_A 81 WAKLVAAKEQEIARLEGLYRKGLANAGAEILDTRAELA----GPNTVKLLASGKTVTAERIVIAVGGHPSPHDALPGHEL 156 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEES----SSSEEEETTTTEEEEEEEEEECCCEEECCCTTSTTGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEe----eCCEEEEecCCeEEEeCEEEEecCCCcccCCCCCCccc
Confidence 011122234455667999999975543 2357777 567789999999999999882334565543
Q ss_pred EEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEE
Q psy2951 163 VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFV 242 (1466)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~ 242 (1466)
+ .+..+...+. ..+++++|||+|++|+|+|..+++.|.+|+++++.+.++ +.+++++.+.+.+.+++.||+++
T Consensus 157 ~---~~~~~~~~~~---~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l-~~~~~~~~~~l~~~l~~~Gv~i~ 229 (463)
T 4dna_A 157 C---ITSNEAFDLP---ALPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEIL-SRFDQDMRRGLHAAMEEKGIRIL 229 (463)
T ss_dssp C---BCHHHHTTCS---SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-TTSCHHHHHHHHHHHHHTTCEEE
T ss_pred c---ccHHHHhhhh---cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc-cccCHHHHHHHHHHHHHCCCEEE
Confidence 2 2445544433 346899999999999999999999999999999988776 57889999999999999999999
Q ss_pred cCceEEEEEecCCCCeEEEE-cCCCcEEeccEEEEeeccccCccc--cccCCceecCCccEEECCCCCcCCCCEEEeccc
Q psy2951 243 MKANVSSFEKNEKNDVTAAN-LDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 319 (1466)
Q Consensus 243 ~~~~v~~i~~~~~~~~~~v~-~~~g~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD~ 319 (1466)
+++.|++++.++++ ...+. +++|+ +++|.||+|+|++|++.+ ++..|++++++|+|.||+++||+.|+|||+|||
T Consensus 230 ~~~~v~~i~~~~~~-~~~v~~~~~g~-i~aD~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~iya~GD~ 307 (463)
T 4dna_A 230 CEDIIQSVSADADG-RRVATTMKHGE-IVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSRTSTPGIYALGDV 307 (463)
T ss_dssp CSCCEEEEEECTTS-CEEEEESSSCE-EEESEEEECSCEEESCTTSSTGGGTCCBCTTSCBCCCTTCBCSSTTEEECSGG
T ss_pred CCCEEEEEEEcCCC-EEEEEEcCCCe-EEeCEEEEeeCcccCCCCCCccccCceECCCCCEeECcCCCCCCCCEEEEEec
Confidence 99999999876433 34577 88887 999999999999999987 678899999999999999999999999999999
Q ss_pred ccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCCC---CCCCCCcccccccceeeEEEEeecCC-----ceE-----E
Q psy2951 320 AYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT---SLSTIPFFWTMLFGVGFRFAGYAAGH-----TQV-----D 386 (1466)
Q Consensus 320 ~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~---~~~~~p~~~s~~~~~~~~~~G~~~~~-----~~~-----~ 386 (1466)
++.+ ..+..|..||+.+|+||++... .+..+|+.. .....+..+|.+... ..+ .
T Consensus 308 ~~~~-----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~--~~~p~~a~vG~te~~a~~~~~~~~~~~~~ 374 (463)
T 4dna_A 308 TDRV-----------QLTPVAIHEAMCFIETEYKNNPTSPDHDLIATAV--FSQPEIGTVGITEEEAARKFQEIEVYRAE 374 (463)
T ss_dssp GSSC-----------CCHHHHHHHHHHHHHHHHSSCCCCCCCSCCCEEE--CSSSCEEEEECCHHHHHHHSSEEEEEEEE
T ss_pred CCCC-----------CChHHHHHHHHHHHHHHcCCCCcccCCCCCCEEE--ECCCCeEEecCCHHHHHHcCCCeEEEEEe
Confidence 8743 3466899999999999997643 445566421 112234445543311 111 1
Q ss_pred Eecc------cCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 387 IVGD------LEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 387 ~~g~------~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
+... -+..+|.+++.+ +++|+|++++|. +++++.++ .+|+++.+. ++++|||++|.+
T Consensus 375 ~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~-~ai~~~~t~~~l~~~~~~hPt~~e~~ 446 (463)
T 4dna_A 375 FRPMKATLSGRKEKTIMKLVVNAADRKVVGAHILGHDAGEMAQLLG-ISLRAGCTKDDFDRTMAVHPTAAEEL 446 (463)
T ss_dssp ECCTTHHHHCCCCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHH-HHHHTTCBHHHHHTSCCCTTCSGGGG
T ss_pred ccccchhhcCCCceEEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhhcccCCCCHHHHH
Confidence 1111 135789999887 489999999998 45677776 999999886 899999999998
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-35 Score=362.58 Aligned_cols=361 Identities=19% Similarity=0.246 Sum_probs=276.9
Q ss_pred CcEEEECCchHHHHHHHHHHhc---CCCCcEEEEcCCCCCCCCCC----CCchhh-------------------------
Q psy2951 1067 DTFIVVGGGPSGATCVETLRQN---GFTGKLYFITDENFLPYDRV----KLSKQL------------------------- 1114 (1466)
Q Consensus 1067 ~~vvIVG~G~aGl~aA~~L~~~---g~~~~i~li~~~~~~~~~~~----~l~~~~------------------------- 1114 (1466)
++|||||||+||++||..|++. |. +|+|||+++ .+.... ..++.+
T Consensus 3 ~dVvIIGgG~aGl~aA~~l~~~~~~G~--~V~liE~~~-~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g~~~~~~~~ 79 (499)
T 1xdi_A 3 TRIVILGGGPAGYEAALVAATSHPETT--QVTVIDCDG-IGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDA 79 (499)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCTTTE--EEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCCcC--EEEEEeCCC-cCCcccCcCccchHHHHHHHHHHHHHHHHHhCCCccccCCC
Confidence 5899999999999999999999 87 999999986 321100 000000
Q ss_pred ccCcccc-----------cccChhhhccCCcEEEcCCeEEEeecC------CCCeEEecCCc--EEecCeEEEecCCCCC
Q psy2951 1115 DIKADSI-----------LLRTEEFYKDNDIHVIKGKKIISDSEL------NEKKIKLQDGT--SIDFTKIYLATGSSPR 1175 (1466)
Q Consensus 1115 ~~~~~~~-----------~~~~~~~~~~~~v~~~~~~~v~~i~d~------~~~~v~~~~g~--~~~yd~lvlAtG~~~~ 1175 (1466)
..+...+ .....+++++.+++++.++ +..+ ++ ....|.+++|. .+.||+||+|||++|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~i-~~~~~~~~~~~~V~~~~g~~~~~~~d~lviATGs~p~ 157 (499)
T 1xdi_A 80 KISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGR-GELI-DSTPGLARHRIKATAADGSTSEHEADVVLVATGASPR 157 (499)
T ss_dssp CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESE-EEEC-CSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEEC
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEe-cCcccCCCCEEEEEeCCCcEEEEEeCEEEEcCCCCCC
Confidence 0001111 0011345667899999997 8888 87 23345556776 7999999999999999
Q ss_pred cCCCCCCCC--cEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHH
Q psy2951 1176 TISQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERI 1253 (1466)
Q Consensus 1176 ~~~~~~g~~--~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l 1253 (1466)
.|+++ |.+ +++.. +++..+. ..+++++|||+|++|+|+|..+++.|.+|+++++.+++++ .+++++.+.+
T Consensus 158 ~p~i~-g~~~~~v~~~---~~~~~~~---~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~-~~d~~~~~~l 229 (499)
T 1xdi_A 158 ILPSA-QPDGERILTW---RQLYDLD---ALPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLP-YEDADAALVL 229 (499)
T ss_dssp CCGGG-CCCSSSEEEG---GGGGGCS---SCCSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSC-CSSHHHHHHH
T ss_pred CCCCC-CCCcCcEEeh---hHhhhhh---ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc-ccCHHHHHHH
Confidence 99888 876 45543 3443332 2468999999999999999999999999999999998887 4899999999
Q ss_pred HHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccCccc--cccCCceeeCCCeEEeCCCccc
Q psy2951 1254 TKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLET 1331 (1466)
Q Consensus 1254 ~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t 1331 (1466)
.+.++++||+++++++|++++ .+++. ..+.+.+|+++++|.||+|+|..|++++ ++.+|+.++.+|+|.||+++||
T Consensus 230 ~~~l~~~GV~i~~~~~V~~i~-~~~~~-v~v~~~~g~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~~~t 307 (499)
T 1xdi_A 230 EESFAERGVRLFKNARAASVT-RTGAG-VLVTMTDGRTVEGSHALMTIGSVPNTSGLGLERVGIQLGRGNYLTVDRVSRT 307 (499)
T ss_dssp HHHHHHTTCEEETTCCEEEEE-ECSSS-EEEEETTSCEEEESEEEECCCEEECCSSSCTTTTTCCCBTTTBCCCCSSSBC
T ss_pred HHHHHHCCCEEEeCCEEEEEE-EeCCE-EEEEECCCcEEEcCEEEECCCCCcCCCcCCchhcCceECCCCCEEECCCccc
Confidence 999999999999999999998 34333 3577888999999999999999999998 7888999998899999999999
Q ss_pred cCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCC-CC--CCCCCccceeccccccEEEEeeCC-----
Q psy2951 1332 NVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEK-KT--SLSTIPFFWTMLFGVGFRFAGYAA----- 1403 (1466)
Q Consensus 1332 ~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~-~~--~~~~~p~~w~~~~~~~~~~~g~~~----- 1403 (1466)
+.|+|||+|||+..+.. ++.|..||++||.||+|. .. .|..+|++| .++..+..+|..+
T Consensus 308 ~~~~IyA~GD~~~~~~l-----------~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~--~~~~~~a~vG~~e~~a~~ 374 (499)
T 1xdi_A 308 LATGIYAAGDCTGLLPL-----------ASVAAMQGRIAMYHALGEGVSPIRLRTVAATV--FTRPEIAAVGVPQSVIDA 374 (499)
T ss_dssp SSTTEEECSGGGTSCSC-----------HHHHHHHHHHHHHHHTTCCCCCCCGGGCEEEE--CSSSEEEEEESCHHHHHH
T ss_pred CCCCEEEEeccCCCccc-----------HHHHHHHHHHHHHHhcCCCCccCCCCCCcEEE--EecCCceEeCCCHHHHHh
Confidence 99999999999986543 378999999999999997 33 355677664 4568888999753
Q ss_pred -CCceEEE------------cCCcCCceEEEEEEe--CCEEEEEEEecCcHH--HHHHHHHHHcCCCCChhcc
Q psy2951 1404 -GHTQVDI------------VGDLEALKFTAYYSN--ADKVLAILTVGMDPL--AAQFAERIKMQKYIQKDQI 1459 (1466)
Q Consensus 1404 -~~~~~~~------------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 1459 (1466)
+.+-.+. .+ +...|++++++ +++|+|+..+|.... +..+.-+|+.+. +.++|
T Consensus 375 ~g~~~~~~~~~~~~~~~~~~~~--~~~g~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~--~~~~l 443 (499)
T 1xdi_A 375 GSVAARTIMLPLRTNARAKMSE--MRHGFVKIFCRRSTGVVIGGVVVAPIASELILPIAVAVQNRI--TVNEL 443 (499)
T ss_dssp TSSCEEEEEEESTTSHHHHHTT--CSSCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTC--BHHHH
T ss_pred CCCCEEEEEEecCcccceeecC--CCceEEEEEEECCCCEEEEEEEECCchHHHHHHHHHHHHCCC--CHHHH
Confidence 2221111 12 24568888886 589999999999643 466666777773 44444
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-35 Score=360.84 Aligned_cols=348 Identities=17% Similarity=0.251 Sum_probs=263.5
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCc----c----------------chhcc---------
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK----L----------------SKQLD--------- 644 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~----~----------------~~~~~--------- 644 (1466)
..+||+||||||||++||..|++.|++ |+++|++. +++.... . ...+.
T Consensus 10 ~~~dVvVIGgG~aGl~aA~~l~~~g~~--V~liE~~~-~GG~~~n~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 86 (479)
T 2hqm_A 10 KHYDYLVIGGGSGGVASARRAASYGAK--TLLVEAKA-LGGTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPLDK 86 (479)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTSCC--EEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTBSTTSCCSG
T ss_pred ccCCEEEEcCCHHHHHHHHHHHHCCCc--EEEEeCCC-cCCcCcccCcHHHHHHHHHHHHHHHHHhHHhcCccccccccc
Confidence 358999999999999999999999988 88888863 2211000 0 00000
Q ss_pred ----cCccccc-----------ccCHhHhhhCCcEEEEceEEEEeccccccEEEccCCC--EEecCEEEEcCCCCCCcC-
Q psy2951 645 ----IKADSIL-----------LRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGT--SIDFTKIYLATGSSPRTI- 706 (1466)
Q Consensus 645 ----~~~~~~~-----------~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~--~~~~d~lviAtG~~~~~~- 706 (1466)
.+...+. ..+...+++.+++++.++ +..+ +.....+.+.+++ ++.||+||||||++|..|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~i-~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~ 164 (479)
T 2hqm_A 87 EHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGW-ARFN-KDGNVEVQKRDNTTEVYSANHILVATGGKAIFPE 164 (479)
T ss_dssp GGCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEE-EEEC-TTSCEEEEESSSCCEEEEEEEEEECCCEEECCCT
T ss_pred ccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEe-eCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCCCC
Confidence 0001111 112234567899999997 7777 7666677766776 899999999999999999
Q ss_pred CCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHH
Q psy2951 707 SQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLF 786 (1466)
Q Consensus 707 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l 786 (1466)
+++ |.+.+ .+.++...+. ..+++++|||+|++|+|+|..|++.|.+|+++++.++++ +.+++++.+.+.+.+
T Consensus 165 ~i~-g~~~~---~~~~~~~~l~---~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l-~~~d~~~~~~l~~~l 236 (479)
T 2hqm_A 165 NIP-GFELG---TDSDGFFRLE---EQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVL-RKFDECIQNTITDHY 236 (479)
T ss_dssp TST-TGGGS---BCHHHHHHCS---SCCSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSC-TTSCHHHHHHHHHHH
T ss_pred CCC-Ccccc---cchHHHhccc---ccCCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccc-cccCHHHHHHHHHHH
Confidence 888 87532 2445554433 358999999999999999999999999999999998877 578999999999999
Q ss_pred HhcCcEEEccceEEEEEecCCCceEEEECCCC-cEEecCEEEEccccccCccc-cccCCceeeCCCcEEeCCCCCCCCCC
Q psy2951 787 ESKGVKFVMKANVSSFEKNEKNDVTAANLDNG-TTIPADLVIVGIGTVLNTNY-LDGKGVELNGQKAVVVNEYLETNVPG 864 (1466)
Q Consensus 787 ~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g-~~i~~D~vi~a~G~~p~~~~-~~~~gl~~~~~G~i~vd~~~~t~~~~ 864 (1466)
++.||++++++++++++..+++.+..+.+++| +++++|.||+|+|++|++.| ++..|++++++|+|.||++++|+.|+
T Consensus 237 ~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~ 316 (479)
T 2hqm_A 237 VKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHLGMGSENVGIKLNSHDQIIADEYQNTNVPN 316 (479)
T ss_dssp HHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEECCCSSGGGGTCCBCTTSCBCCCTTCBCSSTT
T ss_pred HhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCccccChhhcCceECCCCCEeECCCCccCCCC
Confidence 99999999999999998543443456788888 78999999999999999977 78899999999999999999999999
Q ss_pred eEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCC------cCcccCeeeeeecCceeEEeeccCCC----
Q psy2951 865 VYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT------SLSTIPFFWTMLFGVGFRFAGYAAGH---- 934 (1466)
Q Consensus 865 iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~------~~~~~~~~~~~~~~~~~~~~g~~~~~---- 934 (1466)
|||+|||+..+. .++.|..||+.+|.||++... .+..+|++ .+++..+..+|+++..
T Consensus 317 IyA~GD~~~~~~-----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~p~~--~~~~~~~~~vGl~e~~a~~~ 383 (479)
T 2hqm_A 317 IYSLGDVVGKVE-----------LTPVAIAAGRKLSNRLFGPEKFRNDKLDYENVPSV--IFSHPEAGSIGISEKEAIEK 383 (479)
T ss_dssp EEECGGGTTSSC-----------CHHHHHHHHHHHHHHHHSCGGGTTCCCCCTTCCEE--ECCSSCEEEEECCHHHHHHH
T ss_pred EEEEEecCCCcc-----------cHHHHHHHHHHHHHHhcCCCccCcccCCCCCCCeE--EECCCCeEEEeCCHHHHHhc
Confidence 999999976432 457999999999999997541 23345532 2345667777866421
Q ss_pred ---CceeEec-----------ccccceEEEEEe--cCCeEEEEEeecCc
Q psy2951 935 ---TQVDIVG-----------DLEALKFTAYYS--NADKVLAILTVGMD 967 (1466)
Q Consensus 935 ---~~~~~~~-----------~~~~~~~~~~~~--~~~~i~g~~~~g~~ 967 (1466)
....... ..++..|.|+++ ++++++|++++|..
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~ 432 (479)
T 2hqm_A 384 YGKENIKVYNSKFTAMYYAMLSEKSPTRYKIVCAGPNEKVVGLHIVGDS 432 (479)
T ss_dssp HCGGGEEEEEEEECCGGGGGCSSCCCEEEEEEEETTTTEEEEEEEESTT
T ss_pred CCCCcEEEEEEeccHHHHHhhcCCCcEEEEEEEECCCCEEEEEEEECCC
Confidence 1111100 113457899988 46999999999986
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=358.40 Aligned_cols=382 Identities=18% Similarity=0.234 Sum_probs=266.4
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCC--CCC-Cccch----------------hccc------Cc--
Q psy2951 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP--YDR-VKLSK----------------QLDI------KA-- 95 (1466)
Q Consensus 43 ~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~--~~~-~~~~~----------------~~~~------~~-- 95 (1466)
++||+|||||+||++||..|++.|.++.|++.+. ... ... +..++ .+.. ..
T Consensus 2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~--~GG~c~~~gc~P~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 79 (500)
T 1onf_A 2 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKSR--LGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPL 79 (500)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS--TTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHHH
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC--cCccccccCCcchHHHHHHHHHHHHHHhhHhcCCccCCccCHHH
Confidence 4799999999999999999999999888866442 100 000 00000 0000 00
Q ss_pred ---------ccccccChhhhhcCCeEEEeCceEEEeccccccEEEecC-------------CcEEecCEEEEccCCCCCC
Q psy2951 96 ---------DSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQD-------------GTSIDFTKIYLATGSSPRT 153 (1466)
Q Consensus 96 ---------~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~-------------~~~~~~d~lviAtG~~~~~ 153 (1466)
..+...+...+++.+++++.++.+.. + .+++.+.+ +.++.||+||||||++|..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i--d--~~~v~v~~~~~~~~~~~~~~~~~~~~~d~lViAtGs~p~~ 155 (500)
T 1onf_A 80 LVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFL--S--ENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVF 155 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC------------------------------CBSSEEECCCCCBCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEe--e--CCEEEEEeccccccccccCCCceEEEeCEEEECCCCCCCC
Confidence 11111233455678999999875432 2 24455533 5679999999999999985
Q ss_pred CCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHH
Q psy2951 154 ISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKL 233 (1466)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~ 233 (1466)
++ +++.+.++ +.++...+.. +++++|||+|++|+|+|..|+++|.+||++++.+.++ +.+++++.+.+.+.
T Consensus 156 p~-i~G~~~~~---~~~~~~~~~~----~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l-~~~d~~~~~~l~~~ 226 (500)
T 1onf_A 156 PP-VKGIENTI---SSDEFFNIKE----SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRIL-RKFDESVINVLEND 226 (500)
T ss_dssp CS-CTTGGGCE---EHHHHTTCCC----CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSC-TTSCHHHHHHHHHH
T ss_pred CC-CCCCCccc---CHHHHhccCC----CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccC-cccchhhHHHHHHH
Confidence 53 66654433 3344444332 6899999999999999999999999999999988777 57899999999999
Q ss_pred HHhCCcEEEcCceEEEEEecCCCCeEEEEcCCCcE-EeccEEEEeeccccCcc-c-cccCCceecCCccEEECCCCCcCC
Q psy2951 234 FESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTT-IPADLVIVGIGTVLNTN-Y-LDGKGVELNGQKAVVVNEYLETNV 310 (1466)
Q Consensus 234 l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~~~g~~-i~~D~Vi~a~G~~p~~~-~-l~~~gl~~~~~g~i~vd~~~~t~~ 310 (1466)
++++||+++++++|++++.++++. ..+.+++|++ +++|.||+|+|++||++ + ++..|+++ ++|+|.||+++||+.
T Consensus 227 l~~~gv~i~~~~~v~~i~~~~~~~-~~v~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~-~~G~i~vd~~~~t~~ 304 (500)
T 1onf_A 227 MKKNNINIVTFADVVEIKKVSDKN-LSIHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNVET-NNNYIVVDENQRTSV 304 (500)
T ss_dssp HHHTTCEEECSCCEEEEEESSTTC-EEEEETTSCEEEEESEEEECCCBCCTTTTSSCTTTTCCB-SSSCEEECTTCBCSS
T ss_pred HHhCCCEEEECCEEEEEEEcCCce-EEEEECCCcEEEECCEEEECCCCCcCCCCCCchhcCccc-cCCEEEECCCcccCC
Confidence 999999999999999998754332 4567778887 99999999999999996 5 68889998 789999999999999
Q ss_pred CCEEEecccccccCcc-----------------------CCCCcceeccHHHHHHHHHHHHHHhcCCC---CCCCCCCcc
Q psy2951 311 PGVYAGGDIAYAPLHS-----------------------FYNKNASIGHYQLAQYHGRIAALNMVEKK---TSLSTIPFF 364 (1466)
Q Consensus 311 ~~iya~GD~~~~~~~~-----------------------~~g~~~~~~~~~~A~~~g~~aa~~i~~~~---~~~~~~p~~ 364 (1466)
|+|||+|||+..+... ..+....+..+..|..||+.+|+||++.. ..+..+|+.
T Consensus 305 ~~iya~GD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~ 384 (500)
T 1onf_A 305 NNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQLTPVAINAGRLLADRLFLKKTRKTNYKLIPTV 384 (500)
T ss_dssp SSEEECSTTEEEC------------------------------CBCCCCHHHHHHHHHHHHHHHHSCTTCCCCCSSCCEE
T ss_pred CCEEEEeccccccccccccccccccccccccccccccccccccCCcccchhHHHHHHHHHHHHHhCCCCccCCCCCCCeE
Confidence 9999999999432100 00000246788899999999999999753 235556632
Q ss_pred cccccceeeEEEEeecCC-------ceEEEe---------------cccCCCeEEEEEEc--CCEEEEEEEECC--CHHH
Q psy2951 365 WTMLFGVGFRFAGYAAGH-------TQVDIV---------------GDLEALKFTAYYSN--ADKVLAILTVGM--DPLA 418 (1466)
Q Consensus 365 ~s~~~~~~~~~~G~~~~~-------~~~~~~---------------g~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~ 418 (1466)
-.....+..+|..... ..+... ...+..+|.+++.+ +++|+|++++|. ++++
T Consensus 385 --~~~~~~~a~vGl~e~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~~~i 462 (500)
T 1onf_A 385 --IFSHPPIGTIGLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYLKLVCVGKDELIKGLHIIGLNADEIV 462 (500)
T ss_dssp --ECCSSCEEEEECCHHHHHHHTCGGGEEEEEEEECCGGGTTSCSCGGGSCCEEEEEEEETTTTEEEEEEEESTTHHHHH
T ss_pred --EEcCcceEEEeCCHHHHHhcCCCccEEEEEEECchhhhhhccccccCCCceEEEEEEECCCCEEEEEEEECCCHHHHH
Confidence 1122335555654210 112110 11135678888885 589999999998 3456
Q ss_pred HHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 419 AQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 419 ~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
..++ .+|+++.+. +++.|||++|.+
T Consensus 463 ~~~~-~ai~~~~t~~~l~~~~~~~Pt~~e~~ 492 (500)
T 1onf_A 463 QGFA-VALKMNATKKDFDETIPIHPTAAEEF 492 (500)
T ss_dssp HHHH-HHHHTTCBHHHHHTSCCCTTCSTTHH
T ss_pred HHHH-HHHHcCCCHHHHhccccCCCCHHHHH
Confidence 6666 889999876 799999999988
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-34 Score=356.56 Aligned_cols=376 Identities=22% Similarity=0.270 Sum_probs=277.4
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCC----CCccchhc-------------------c---cC
Q psy2951 41 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD----RVKLSKQL-------------------D---IK 94 (1466)
Q Consensus 41 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~----~~~~~~~~-------------------~---~~ 94 (1466)
+.++||+|||||+||++||..|++.|.++.|++.+.. .... .+..++.+ . ..
T Consensus 41 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~--~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~ 118 (523)
T 1mo9_A 41 PREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPF--LGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEK 118 (523)
T ss_dssp CSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS--SSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTC
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC--CCCcccccCcCchHHHHHHHHHHHHHhhhhhcCcHHHHHhh
Confidence 4568999999999999999999999998877654331 1100 00000000 0 00
Q ss_pred ---ccccccc----Ch---hhh-----hcCCeEEE-eCceEEEeccccccEEEecCCcEEecCEEEEccCCCCCCCCCCC
Q psy2951 95 ---ADSILLR----TE---EFY-----KDNDIHVI-KGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQAD 158 (1466)
Q Consensus 95 ---~~~~~~~----~~---~~~-----~~~~v~~~-~~~~v~~~~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~ 158 (1466)
.+++..+ .. .++ ++.+++++ .+.....+ .+++.+. +..+.||+||+|||++|..++ ++
T Consensus 119 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~----~~~v~~~-g~~~~~d~lViATGs~p~~p~-i~ 192 (523)
T 1mo9_A 119 VVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVID----NHTVEAA-GKVFKAKNLILAVGAGPGTLD-VP 192 (523)
T ss_dssp CCCHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEE----TTEEEET-TEEEEBSCEEECCCEECCCCC-ST
T ss_pred hhhHHHHHHHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEee----CCEEEEC-CEEEEeCEEEECCCCCCCCCC-CC
Confidence 1111111 23 455 77899998 66544332 2567765 678999999999999998654 55
Q ss_pred CCCc--EEEecCHHHHH-hhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHH
Q psy2951 159 GVNK--VFYLRTVEDAN-NIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFE 235 (1466)
Q Consensus 159 ~~~~--~~~~~~~~~~~-~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~ 235 (1466)
+.+. ++ +..+.. .+.. .++++++|||+|++|+|+|..+++.|.+|+++++.+.+++ .+++++.+.+.+.++
T Consensus 193 G~~~~~v~---~~~~~~~~l~~--~~g~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~ 266 (523)
T 1mo9_A 193 GVNAKGVF---DHATLVEELDY--EPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKL-IKDNETRAYVLDRMK 266 (523)
T ss_dssp TTTSBTEE---EHHHHHHHCCS--CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT-CCSHHHHHHHHHHHH
T ss_pred CcccCcEe---eHHHHHHHHHh--cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcccc-cccHHHHHHHHHHHH
Confidence 5433 44 334444 4332 2448999999999999999999999999999999887664 578999999999999
Q ss_pred hCCcEEEcCceEEEEEecCCCCe--EEEEcCCCc-EEeccEEEEeeccccCcc-ccccCCceecCCccEEECCCCCcCCC
Q psy2951 236 SKGVKFVMKANVSSFEKNEKNDV--TAANLDNGT-TIPADLVIVGIGTVLNTN-YLDGKGVELNGQKAVVVNEYLETNVP 311 (1466)
Q Consensus 236 ~~GV~i~~~~~v~~i~~~~~~~~--~~v~~~~g~-~i~~D~Vi~a~G~~p~~~-~l~~~gl~~~~~g~i~vd~~~~t~~~ 311 (1466)
+.||+++++++|++++.++++++ ..+.+++|+ ++++|.||+|+|++|+++ +++..|++++++|+|.||+++||+.|
T Consensus 267 ~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~~~~l~~~gl~~~~~G~i~Vd~~~~t~~~ 346 (523)
T 1mo9_A 267 EQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELAKILGLDLGPKGEVLVNEYLQTSVP 346 (523)
T ss_dssp HTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEECCHHHHHHHTCCBCTTSCBCCCTTSBCSST
T ss_pred hCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccCCccCHHHcCCccCCCCCEEECCCCccCCC
Confidence 99999999999999987544433 456777887 899999999999999998 78888999988899999999999999
Q ss_pred CEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCCCC--CCCCCcccccccceeeEEEEeecCC-----ce
Q psy2951 312 GVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS--LSTIPFFWTMLFGVGFRFAGYAAGH-----TQ 384 (1466)
Q Consensus 312 ~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~--~~~~p~~~s~~~~~~~~~~G~~~~~-----~~ 384 (1466)
+|||+|||++.+ ..+..|..||+.+|.||++.... +..+|+.+.. ...+.++|..... .+
T Consensus 347 ~IyA~GD~~~~~-----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~--~~~~a~vG~~e~~a~~~g~~ 413 (523)
T 1mo9_A 347 NVYAVGDLIGGP-----------MEMFKARKSGCYAARNVMGEKISYTPKNYPDFLHT--HYEVSFLGMGEEEARAAGHE 413 (523)
T ss_dssp TEEECGGGGCSS-----------CSHHHHHHHHHHHHHHHTTCCCCCCCCSCCEEEES--SSEEEEEECCHHHHHHTTCC
T ss_pred CEEEEeecCCCc-----------ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEC--CCceEEEeCCHHHHHhCCCC
Confidence 999999999754 34567999999999999986543 5667765432 2345666654311 11
Q ss_pred EEEe----cc-----------------------cCCCeEEEEEEc--CCEEEEEEEECC-C-HHHHHHHHHHhcCCCcc-
Q psy2951 385 VDIV----GD-----------------------LEALKFTAYYSN--ADKVLAILTVGM-D-PLAAQFAEQVLEFPYSS- 432 (1466)
Q Consensus 385 ~~~~----g~-----------------------~~~~~~~~~~~~--~~~i~g~~~~~~-~-~~~~~~~~~~i~~~~~~- 432 (1466)
+... .+ .+..+|.+++.+ +++|+|++++|. + +++..++ .+|+.+.+.
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~-~ai~~~~t~~ 492 (523)
T 1mo9_A 414 IVTIKMPPDTENGLNVALPASDRTMLYAFGKGTAHMSGFQKIVIDAKTRKVLGAHHVGYGAKDAFQYLN-VLIKQGLTVD 492 (523)
T ss_dssp EEEEEESCCSTTTTCSSCSCCTTTHHHHHSTTTGGGGCEEEEEEETTTCBEEEEEEEESSCHHHHHHHH-HHHHTTCBHH
T ss_pred EEEEEEecccccccccccccccccccceEEeecCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCCHH
Confidence 1110 01 234679998886 589999999998 3 3555555 999999876
Q ss_pred ----c--cccCcccchhh
Q psy2951 433 ----L--PHSHRCLGVVL 444 (1466)
Q Consensus 433 ----~--~~~~p~~~e~~ 444 (1466)
+ ++.|||++|.+
T Consensus 493 ~l~~~~~~~~~Pt~~e~~ 510 (523)
T 1mo9_A 493 ELGDMDELFLNPTHFIQL 510 (523)
T ss_dssp HHHTSCCCSSCSCCHHHH
T ss_pred HHHhCCcceECCCHHHHH
Confidence 6 99999999988
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-35 Score=360.67 Aligned_cols=367 Identities=23% Similarity=0.332 Sum_probs=276.0
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCC----Cchhhc-----------------c-------
Q psy2951 1065 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK----LSKQLD-----------------I------- 1116 (1466)
Q Consensus 1065 ~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~----l~~~~~-----------------~------- 1116 (1466)
.+++|+|||||+||+++|..|++.|. +|+|||+++.++..... .++.+. .
T Consensus 5 ~~~dvvIIGaG~aGl~aA~~l~~~g~--~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 82 (470)
T 1dxl_A 5 DENDVVIIGGGPGGYVAAIKAAQLGF--KTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEI 82 (470)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHTC--CEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEE
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCC--eEEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccCCCcc
Confidence 35789999999999999999999998 99999998765432100 011000 0
Q ss_pred Ccccccc-----------cChhhhccCCcEEEcCCeEEEeecCCCCeEEecCC--cEEecCeEEEecCCCCCcCCCCCCC
Q psy2951 1117 KADSILL-----------RTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQADGV 1183 (1466)
Q Consensus 1117 ~~~~~~~-----------~~~~~~~~~~v~~~~~~~v~~i~d~~~~~v~~~~g--~~~~yd~lvlAtG~~~~~~~~~~g~ 1183 (1466)
....+.. ...+++++.+++++.++ +..+ +.....|.+.+| .++.||+||+|||++|+.|+++ |.
T Consensus 83 ~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~-~~~~-~~~~~~v~~~~G~~~~i~~d~lIiAtGs~p~~p~~~-g~ 159 (470)
T 1dxl_A 83 DLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFV-SPSEISVDTIEGENTVVKGKHIIIATGSDVKSLPGV-TI 159 (470)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESC-EEEE-ETTEEEECCSSSCCEEEECSEEEECCCEEECCBTTB-CC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEe-cCCEEEEEeCCCceEEEEcCEEEECCCCCCCCCCCC-CC
Confidence 0000000 01234556689999998 4458 776555666677 6899999999999999999888 76
Q ss_pred C--cEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCC
Q psy2951 1184 N--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKG 1261 (1466)
Q Consensus 1184 ~--~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~g 1261 (1466)
+ +++ +.+++..+. ..+++++|||+|++|+|+|..|++.|.+|+++++.+.+++ .+++++.+.+.+.+++.|
T Consensus 160 ~~~~v~---~~~~~~~~~---~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~-~~~~~~~~~l~~~l~~~g 232 (470)
T 1dxl_A 160 DEKKIV---SSTGALALS---EIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVP-TMDAEIRKQFQRSLEKQG 232 (470)
T ss_dssp CSSSEE---CHHHHTTCS---SCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHSS
T ss_pred CcccEE---eHHHhhhhh---hcCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc-cccHHHHHHHHHHHHHcC
Confidence 6 333 455654433 2479999999999999999999999999999999998886 688999999999999999
Q ss_pred cEEEcCceEEEEEecCCCcEEEEEcC---CC--CeeecCEEEEeeccccCccc--cccCCceeeCCCeEEeCCCccccCC
Q psy2951 1262 VKFVMKANVSSFEKNEKNDVTAANLD---NG--TTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVP 1334 (1466)
Q Consensus 1262 v~~~~~~~v~~i~~~~~g~~~~v~l~---~g--~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t~~~ 1334 (1466)
|+++++++|++++ .+++. ..+.+. +| +++++|.||+|+|..|++++ ++..|+.++.+|+|.||+++||+.|
T Consensus 233 v~i~~~~~v~~i~-~~~~~-~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t~~~ 310 (470)
T 1dxl_A 233 MKFKLKTKVVGVD-TSGDG-VKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILVNERFSTNVS 310 (470)
T ss_dssp CCEECSEEEEEEE-CSSSS-EEEEEEESSSCCCEEEEESEEECCCCEEECCTTSCCTTTTCCBCSSSCBCCCTTCBCSST
T ss_pred CEEEeCCEEEEEE-EcCCe-EEEEEEecCCCcceEEECCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECcCCccCCC
Confidence 9999999999998 33333 335553 45 68999999999999999997 7888999988889999999999999
Q ss_pred CEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCCCCC--CCCCccceeccccccEEEEeeCC-----CCce
Q psy2951 1335 GVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS--LSTIPFFWTMLFGVGFRFAGYAA-----GHTQ 1407 (1466)
Q Consensus 1335 ~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~~~--~~~~p~~w~~~~~~~~~~~g~~~-----~~~~ 1407 (1466)
+|||+|||+..|.. ++.|..||+.||.||+|...+ |..+|+ ...++..+-.+|..+ ...+
T Consensus 311 ~Iya~GD~~~~~~~-----------~~~A~~~g~~aa~~i~g~~~~~~~~~~p~--~~~~~~~~a~vG~~e~~a~~~g~~ 377 (470)
T 1dxl_A 311 GVYAIGDVIPGPML-----------AHKAEEDGVACVEYLAGKVGHVDYDKVPG--VVYTNPEVASVGKTEEQVKETGVE 377 (470)
T ss_dssp TEEECSTTSSSCCC-----------HHHHHHHHHHHHHHHTTSCCCCCTTSCCE--EECSSSEEEEEECCHHHHHHTTCC
T ss_pred CEEEEeccCCCCcc-----------HHHHHHHHHHHHHHHcCCCcCCCCCCCCE--EEECCCceEEEcCCHHHHHhcCCc
Confidence 99999999986543 378999999999999997655 445664 445567788888752 1112
Q ss_pred EEEcC-----------CcCCceEEEEEEe--CCEEEEEEEecCc--HHHHHHHHHHHcCCCCChhccc
Q psy2951 1408 VDIVG-----------DLEALKFTAYYSN--ADKVLAILTVGMD--PLAAQFAERIKMQKYIQKDQIE 1460 (1466)
Q Consensus 1408 ~~~~~-----------~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 1460 (1466)
+.+-. .-++..|++++++ +++|+|+..+|.. ..+..+.-+|+.+ ++.++|+
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~--~~~~~l~ 443 (470)
T 1dxl_A 378 YRVGKFPFMANSRAKAIDNAEGLVKIIAEKETDKILGVHIMAPNAGELIHEAAIALQYD--ASSEDIA 443 (470)
T ss_dssp EEEEEEEGGGCHHHHHHSCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTT--CBHHHHH
T ss_pred EEEEEEecccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC--CCHHHHh
Confidence 22210 0124568888885 7899999999997 3456666677777 3445553
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-34 Score=352.41 Aligned_cols=376 Identities=22% Similarity=0.302 Sum_probs=274.6
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCC-------------------------CCCCCC-CCccchhcccCc
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE-------------------------NFLPYD-RVKLSKQLDIKA 95 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~-------------------------~~~~~~-~~~~~~~~~~~~ 95 (1466)
.++||+|||||+||++||.+|++.|.++.|++.+.- ...++. ..... ......
T Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~g~~~~-~~~~~~ 81 (467)
T 1zk7_A 3 PPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAAT-VPTIDR 81 (467)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSTTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTTTSCCC-CCCCCH
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCccccCCCccchHHHHHHHHHHHHHhhhhhcCCccCC-CCccCH
Confidence 368999999999999999999999998777654310 001111 00000 000000
Q ss_pred cccc------------ccChhhhhcC-CeEEEeCceEEEeccccccEEEecCC--cEEecCEEEEccCCCCCCCCCCCCC
Q psy2951 96 DSIL------------LRTEEFYKDN-DIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQADGV 160 (1466)
Q Consensus 96 ~~~~------------~~~~~~~~~~-~v~~~~~~~v~~~~~~~~~~v~~~~~--~~~~~d~lviAtG~~~~~~~~~~~~ 160 (1466)
..+. ..+.+++++. +++++.++.... +....++.+.++ ..+.||+||+|||++|+.++ +++.
T Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~~~~~--~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~-i~G~ 158 (467)
T 1zk7_A 82 SKLLAQQQARVDELRHAKYEGILGGNPAITVVHGEARFK--DDQSLTVRLNEGGERVVMFDRCLVATGASPAVPP-IPGL 158 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEEEEEEE--ETTEEEEEETTSSEEEEECSEEEECCCEEECCCC-CTTT
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEEEEEEc--cCCEEEEEeCCCceEEEEeCEEEEeCCCCCCCCC-CCCC
Confidence 1110 0234566677 999998874433 444566666677 67999999999999988554 5554
Q ss_pred CcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcE
Q psy2951 161 NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVK 240 (1466)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~ 240 (1466)
+... +.+..+...+.. .+++++|||+|++|+|+|..+++.|.+|+++++.+.+++ +++++.+.+.+.+++.||+
T Consensus 159 ~~~~-~~~~~~~~~~~~---~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~--~~~~~~~~l~~~l~~~Gv~ 232 (467)
T 1zk7_A 159 KESP-YWTSTEALASDT---IPERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFR--EDPAIGEAVTAAFRAEGIE 232 (467)
T ss_dssp TTSC-CBCHHHHHHCSS---CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT--SCHHHHHHHHHHHHHTTCE
T ss_pred CcCc-eecHHHHhcccc---cCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCC--CCHHHHHHHHHHHHhCCCE
Confidence 4321 225555555432 468999999999999999999999999999999987775 7899999999999999999
Q ss_pred EEcCceEEEEEecCCCCeEEEEcCCCcEEeccEEEEeeccccCccc--cccCCceecCCccEEECCCCCcCCCCEEEecc
Q psy2951 241 FVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGD 318 (1466)
Q Consensus 241 i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD 318 (1466)
++++++|++++.++ ....+.++ +.++++|.||+|+|+.|++++ ++..+++++++|+|.||++++|+.|+|||+||
T Consensus 233 i~~~~~v~~i~~~~--~~~~v~~~-~~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD 309 (467)
T 1zk7_A 233 VLEHTQASQVAHMD--GEFVLTTT-HGELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQGMRTSNPNIYAAGD 309 (467)
T ss_dssp EETTCCEEEEEEET--TEEEEEET-TEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTCBCSSTTEEECST
T ss_pred EEcCCEEEEEEEeC--CEEEEEEC-CcEEEcCEEEECCCCCcCCCcCCchhcCCcCCCCCCEEECCCcccCCCCEEEEec
Confidence 99999999998653 23345555 568999999999999999885 56788999888999999999999999999999
Q ss_pred cccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCCC--CCCCCCcccccccceeeEEEEeecCC-----ceEEEe---
Q psy2951 319 IAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT--SLSTIPFFWTMLFGVGFRFAGYAAGH-----TQVDIV--- 388 (1466)
Q Consensus 319 ~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~--~~~~~p~~~s~~~~~~~~~~G~~~~~-----~~~~~~--- 388 (1466)
|+..+ ..+..|..||+.+|.||++... ++..+|+. ......+.++|..... .++...
T Consensus 310 ~~~~~-----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~--~~~~~~~a~vG~~~~~a~~~g~~~~~~~~~ 376 (467)
T 1zk7_A 310 CTDQP-----------QFVYVAAAAGTRAAINMTGGDAALDLTAMPAV--VFTDPQVATVGYSEAEAHHDGIETDSRTLT 376 (467)
T ss_dssp TBSSC-----------CCHHHHHHHHHHHHHHHTTCCCCCCCTTCEEE--ECSSSEEEEEECCHHHHHHTTCCEEEEEEE
T ss_pred cCCCc-----------ccHHHHHHHHHHHHHHHcCCCcccCCCCCCEE--EecCCceEEEecCHHHHHhcCCCeEEEEEe
Confidence 98754 3466899999999999997643 34455533 2223356667764321 111111
Q ss_pred ----c----ccCCCeEEEEEEc--CCEEEEEEEECCC--HHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 389 ----G----DLEALKFTAYYSN--ADKVLAILTVGMD--PLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 389 ----g----~~~~~~~~~~~~~--~~~i~g~~~~~~~--~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
+ ..+..+|.+++.+ +++|+|++++|.. .+++.++ .+|+.+.+. +.++|||++|.+
T Consensus 377 ~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~a~~~i~~~~-~~i~~~~~~~~l~~~~~~~pt~~e~~ 448 (467)
T 1zk7_A 377 LDNVPRALANFDTRGFIKLVIEEGSHRLIGVQAVAPEAGELIQTAA-LAIRNRMTVQELADQLFPYLTMVEGL 448 (467)
T ss_dssp GGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHH-HHHHTTCBHHHHHTSCCCTTSTTHHH
T ss_pred cccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhcCccCCCCHHHHH
Confidence 0 1235789999887 6999999999983 4555555 899999876 799999999998
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-35 Score=355.10 Aligned_cols=369 Identities=22% Similarity=0.277 Sum_probs=270.2
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCC---C-Cccchh-------------------ccc-----
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD---R-VKLSKQ-------------------LDI----- 93 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~---~-~~~~~~-------------------~~~----- 93 (1466)
.++||+||||||||++||..|++.|.++.|++ ++.. ... . +..++. +..
T Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie--~~~~-GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~~g~~~~~~ 80 (458)
T 1lvl_A 4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVE--GQAL-GGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASP 80 (458)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHTCCEEEEC--SSCT-THHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEc--cCCC-CCcCCCcCcHhHHHHHHHHHHHHHHhhcccccccCcccCCC
Confidence 35899999999999999999999999877764 3221 000 0 000000 000
Q ss_pred --Ccccccc-----------cChhhhhcCCeEEEeCceEEEeccccccEEEecCCcEEecCEEEEccCCCCCCCCCCCCC
Q psy2951 94 --KADSILL-----------RTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGV 160 (1466)
Q Consensus 94 --~~~~~~~-----------~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~~~ 160 (1466)
+..++.. ....++++.+++++.++.+..+ .+++.+++ .++.||+||||||++|+.+|.++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~----~~~v~v~~-~~~~~d~lviATGs~p~~~~~~~~~ 155 (458)
T 1lvl_A 81 RLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLD----GKQVEVDG-QRIQCEHLLLATGSSSVELPMLPLG 155 (458)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEE----TTEEEETT-EEEECSEEEECCCEEECCBTTBCCB
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEcc----CCEEEEee-EEEEeCEEEEeCCCCCCCCCCCCcc
Confidence 1111111 1235667889999999987642 36777766 7899999999999999866544432
Q ss_pred CcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcE
Q psy2951 161 NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVK 240 (1466)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~ 240 (1466)
.. +.+..+...+.. .+++++|||+|++|+|+|..|++.|.+|+++++.+.+++ .+++++.+.+.+.+++.||+
T Consensus 156 ~~---v~~~~~~~~~~~---~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~gv~ 228 (458)
T 1lvl_A 156 GP---VISSTEALAPKA---LPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILP-TYDSELTAPVAESLKKLGIA 228 (458)
T ss_dssp TT---EECHHHHTCCSS---CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHHTCE
T ss_pred Cc---EecHHHHhhhhc---cCCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCcccc-ccCHHHHHHHHHHHHHCCCE
Confidence 22 235566554432 468999999999999999999999999999999988774 78899999999999999999
Q ss_pred EEcCceEEEEEecCCCCeEEEEcCCC--cEEeccEEEEeeccccCccc--cccCCceecCCccEEECCCCCcCCCCEEEe
Q psy2951 241 FVMKANVSSFEKNEKNDVTAANLDNG--TTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAG 316 (1466)
Q Consensus 241 i~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~~~iya~ 316 (1466)
++++++|++++. + .+ .+...+| +++++|.||+|+|++|++++ ++..|++++++ +|.||++++|+.|+|||+
T Consensus 229 i~~~~~v~~i~~-~--~v-~v~~~~G~~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~-~i~vd~~~~t~~~~Iya~ 303 (458)
T 1lvl_A 229 LHLGHSVEGYEN-G--CL-LANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGA-AIAIDERCQTSMHNVWAI 303 (458)
T ss_dssp EETTCEEEEEET-T--EE-EEECSSSCCCEECCSCEEECCCEEECCSSSSGGGSCCCEETT-EECCCTTCBCSSTTEEEC
T ss_pred EEECCEEEEEEe-C--CE-EEEECCCceEEEECCEEEECcCCCcCCCCCCcHhcCCcccCC-EEeECCCCcCCCCCEEEe
Confidence 999999999986 3 23 3444456 68999999999999999986 57888998887 999999999999999999
Q ss_pred cccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCCCC--CCCCCcccccccceeeEEEEeecC-----CceEEEe-
Q psy2951 317 GDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS--LSTIPFFWTMLFGVGFRFAGYAAG-----HTQVDIV- 388 (1466)
Q Consensus 317 GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~--~~~~p~~~s~~~~~~~~~~G~~~~-----~~~~~~~- 388 (1466)
|||+..+ ..+..|..||+.+|.||.+.... +..+|+. ...+..+..+|.... ..++...
T Consensus 304 GD~~~~~-----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~--~~~~p~~a~vG~~e~~a~~~g~~~~~~~ 370 (458)
T 1lvl_A 304 GDVAGEP-----------MLAHRAMAQGEMVAEIIAGKARRFEPAAIAAV--CFTDPEVVVVGKTPEQASQQGLDCIVAQ 370 (458)
T ss_dssp GGGGCSS-----------CCHHHHHHHHHHHHHHHTTCCCCCCCSCCCEE--ECSSSEEEEEECCHHHHHHTTCCEEEEE
T ss_pred eccCCCc-----------ccHHHHHHHHHHHHHHhcCCCccCCCCCCCEE--EECCCCeEEEeCCHHHHHHcCCCEEEEE
Confidence 9998754 34668999999999999985443 3445532 222223445554321 1111110
Q ss_pred ----------cccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 389 ----------GDLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 389 ----------g~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
...+..+|.+++.+ +++|+|++++|. ++++..++ .+|+.+.+. +++.|||++|.+
T Consensus 371 ~~~~~~~~~~~~~~~~g~~kl~~d~~~~~ilG~~~vg~~a~e~i~~~~-~ai~~~~~~~~l~~~~~~~Pt~~e~~ 444 (458)
T 1lvl_A 371 FPFAANGRAMSLESKSGFVRVVARRDNHLILGWQAVGVAVSELSTAFA-QSLEMGACLEDVAGTIHAHPTLGEAV 444 (458)
T ss_dssp EEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTGGGHHHHHH-HHHHHTCBHHHHHTSCCCTTCTTHHH
T ss_pred EECccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhhCcCCCCCHHHHH
Confidence 01134689988885 589999999998 35666666 899988875 799999999988
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-35 Score=359.16 Aligned_cols=363 Identities=23% Similarity=0.282 Sum_probs=274.7
Q ss_pred CcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCC---C-CCchhhc-----------------c------Ccc
Q psy2951 1067 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR---V-KLSKQLD-----------------I------KAD 1119 (1466)
Q Consensus 1067 ~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~---~-~l~~~~~-----------------~------~~~ 1119 (1466)
++|+|||||+||+++|..|++.|. +|+|||++. .+... . ..++.+. . ...
T Consensus 4 ~dvvIIGaG~aGl~aA~~l~~~G~--~V~liE~~~-~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~~~~~~~~~ 80 (464)
T 2a8x_A 4 YDVVVLGAGPGGYVAAIRAAQLGL--STAIVEPKY-WGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGISGEVTFDYG 80 (464)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTC--CEEEECSSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEEECCEECHH
T ss_pred CCEEEECCCHHHHHHHHHHHhCCC--eEEEEeCCC-CCCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCCCCCccCHH
Confidence 589999999999999999999998 999999972 22000 0 0000000 0 000
Q ss_pred ccc-----------ccChhhhccCCcEEEcCCeEEEeecCCCCeEEecCC--cEEecCeEEEecCCCCCcCCCCCCCCcE
Q psy2951 1120 SIL-----------LRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQADGVNKV 1186 (1466)
Q Consensus 1120 ~~~-----------~~~~~~~~~~~v~~~~~~~v~~i~d~~~~~v~~~~g--~~~~yd~lvlAtG~~~~~~~~~~g~~~v 1186 (1466)
.+. ....+++++.+++++.++.+ .+ +.....|.+.+| .++.||+||+|||+.|+.|+++ |.+..
T Consensus 81 ~~~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~-~i-d~~~v~V~~~~G~~~~~~~d~lViAtG~~~~~~~~~-g~~~~ 157 (464)
T 2a8x_A 81 IAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGT-FA-DANTLLVDLNDGGTESVTFDNAIIATGSSTRLVPGT-SLSAN 157 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEE-ES-SSSEEEEEETTSCCEEEEEEEEEECCCEEECCCTTC-CCBTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEE-Ee-cCCeEEEEeCCCceEEEEcCEEEECCCCCCCCCCCC-CCCce
Confidence 000 00123455679999998844 47 766556777777 6899999999999999998888 77632
Q ss_pred EEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEc
Q psy2951 1187 FYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVM 1266 (1466)
Q Consensus 1187 ~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~ 1266 (1466)
+.+.+++..+.+ .+++++|||+|++|+|+|..|++.|.+|+++++.+++++ .+++++.+.+.+.++++||++++
T Consensus 158 --~~~~~~~~~~~~---~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~gv~i~~ 231 (464)
T 2a8x_A 158 --VVTYEEQILSRE---LPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALP-NEDADVSKEIEKQFKKLGVTILT 231 (464)
T ss_dssp --EECHHHHHTCSS---CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHHTCEEEC
T ss_pred --EEecHHHhhccc---cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCcccc-ccCHHHHHHHHHHHHHcCCEEEe
Confidence 335677755542 478999999999999999999999999999999998887 68899999999999999999999
Q ss_pred CceEEEEEecCCCcEEEEEcC-CC--CeeecCEEEEeeccccCccc--cccCCceeeCCCeEEeCCCccccCCCEEEecc
Q psy2951 1267 KANVSSFEKNEKNDVTAANLD-NG--TTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGD 1341 (1466)
Q Consensus 1267 ~~~v~~i~~~~~g~~~~v~l~-~g--~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD 1341 (1466)
+++|++++ .+++. ..+.+. +| +++++|.||+|+|..|++++ ++.+|+.++.+|+|.||+++||+.|+|||+||
T Consensus 232 ~~~v~~i~-~~~~~-~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t~~~~IyA~GD 309 (464)
T 2a8x_A 232 ATKVESIA-DGGSQ-VTVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYMRTNVGHIYAIGD 309 (464)
T ss_dssp SCEEEEEE-ECSSC-EEEEEESSSCEEEEEESEEEECSCEEECCSSSCHHHHTCCBCTTSSBCCCTTSBCSSTTEEECGG
T ss_pred CcEEEEEE-EcCCe-EEEEEEcCCceEEEEcCEEEECCCCCccCCCCCchhcCCccCCCCCEeECcCCccCCCCEEEeEC
Confidence 99999998 33333 345554 66 67999999999999999997 67889999888899999999999999999999
Q ss_pred cccCCCccCCCceeeeecHHHHHHHHHHHHHHhcC-CCCC---CCCCccceeccccccEEEEeeCC-----CCceEEE--
Q psy2951 1342 IAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVE-KKTS---LSTIPFFWTMLFGVGFRFAGYAA-----GHTQVDI-- 1410 (1466)
Q Consensus 1342 ~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g-~~~~---~~~~p~~w~~~~~~~~~~~g~~~-----~~~~~~~-- 1410 (1466)
|+..+.. ++.|..||+.||.||+| ...+ |..+|++ ..++..+-.+|..+ ...++.+
T Consensus 310 ~~~~~~~-----------~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~--~~~~~~~a~vG~~e~~a~~~g~~~~~~~ 376 (464)
T 2a8x_A 310 VNGLLQL-----------AHVAEAQGVVAAETIAGAETLTLGDHRMLPRA--TFCQPNVASFGLTEQQARNEGYDVVVAK 376 (464)
T ss_dssp GGCSSCS-----------HHHHHHHHHHHHHHHHTCCCCCCCCGGGSCEE--ECSSSEEEEEECCHHHHHHTTCCEEEEE
T ss_pred cCCCccC-----------HHHHHHHHHHHHHHhcCCCCcccCCCCCCCEE--EECCCCeEEEcCCHHHHHhcCCCEEEEE
Confidence 9986543 37899999999999999 5555 5567755 34457787788742 1112221
Q ss_pred -----------cCCcCCceEEEEEEe--CCEEEEEEEecCc--HHHHHHHHHHHcCCCCChhccc
Q psy2951 1411 -----------VGDLEALKFTAYYSN--ADKVLAILTVGMD--PLAAQFAERIKMQKYIQKDQIE 1460 (1466)
Q Consensus 1411 -----------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 1460 (1466)
.+ ++..|++++++ +++|+|+..+|.. ..+..+.-+|+.+. +.++|+
T Consensus 377 ~~~~~~~~~~~~~--~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~--~~~~l~ 437 (464)
T 2a8x_A 377 FPFTANAKAHGVG--DPSGFVKLVADAKHGELLGGHLVGHDVAELLPELTLAQRWDL--TASELA 437 (464)
T ss_dssp EEGGGCHHHHHHT--CCCCEEEEEEETTTTEEEEEEEEETTGGGGHHHHHHHHHTTC--BHHHHT
T ss_pred EEcchhhhhhhcC--CCcEEEEEEEECCCCEEEEEEEECcCHHHHHHHHHHHHHCCC--CHHHHh
Confidence 12 24568888885 7999999999996 44667777888774 455553
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-35 Score=361.17 Aligned_cols=375 Identities=15% Similarity=0.226 Sum_probs=274.6
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCC----CCccchhc------------------ccCccc---
Q psy2951 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD----RVKLSKQL------------------DIKADS--- 97 (1466)
Q Consensus 43 ~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~----~~~~~~~~------------------~~~~~~--- 97 (1466)
++||+||||||||++||..|++.|.++.|++ +.+..... .+..++.+ ......
T Consensus 4 ~~DVvVIGgG~aGl~aA~~l~~~G~~V~liE--k~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (466)
T 3l8k_A 4 KYDVVVIGAGGAGYHGAFRLAKAKYNVLMAD--PKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFSTVQD 81 (466)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEC--TTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHHHHH
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCeEEEEE--CCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHHHHH
Confidence 4899999999999999999999999877754 33222110 00000000 000000
Q ss_pred -------cc--ccChhhhhcCCeEEEeCceEEEeccccccEEEecCCcE--EecCEEEEccCCCCCCCCCCCCCCcEEEe
Q psy2951 98 -------IL--LRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTS--IDFTKIYLATGSSPRTISQADGVNKVFYL 166 (1466)
Q Consensus 98 -------~~--~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~~--~~~d~lviAtG~~~~~~~~~~~~~~~~~~ 166 (1466)
+. ..+..++++.+++++.++.... +....++...+++. +.||+||+|||++|+.++ +++.+. +
T Consensus 82 ~~~~~~~l~~~~~~~~~~~~~~v~~~~g~v~~i--d~~~~~V~~~~g~~~~~~~d~lviAtG~~p~~p~-i~G~~~---~ 155 (466)
T 3l8k_A 82 RKDYVQELRFKQHKRNMSQYETLTFYKGYVKIK--DPTHVIVKTDEGKEIEAETRYMIIASGAETAKLR-LPGVEY---C 155 (466)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTEEEESEEEEEE--ETTEEEEEETTSCEEEEEEEEEEECCCEEECCCC-CTTGGG---S
T ss_pred HHHhheeccccchHHHHHHhCCCEEEEeEEEEe--cCCeEEEEcCCCcEEEEecCEEEECCCCCccCCC-CCCccc---e
Confidence 11 3344566778999999865443 45567777778878 999999999999988654 555553 3
Q ss_pred cCHHHHHhhcccC-CCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEEcCc
Q psy2951 167 RTVEDANNIAPHI-TPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKA 245 (1466)
Q Consensus 167 ~~~~~~~~~~~~~-~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~ 245 (1466)
.+..+...+...+ ..+++++|||+|++|+|+|..+++.|.+|+++++.+.+++..+++++.+.+.+.++ |++++++
T Consensus 156 ~t~~~~~~~~~~l~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~---v~i~~~~ 232 (466)
T 3l8k_A 156 LTSDDIFGYKTSFRKLPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLEDQDIVNTLLSILK---LNIKFNS 232 (466)
T ss_dssp BCHHHHHSTTCSCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCCHHHHHHHHHHHC---CCEECSC
T ss_pred EeHHHHHHHHHHHhhCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCCCCCHHHHHHHHhcCE---EEEEECC
Confidence 4566666433322 24689999999999999999999999999999999887754448999998888876 9999999
Q ss_pred eEEEEEecCCCCeEEEEcC--CCc--EEeccEEEEeeccccCccc-cccCCceecCCccEEECCCCCcCCCCEEEecccc
Q psy2951 246 NVSSFEKNEKNDVTAANLD--NGT--TIPADLVIVGIGTVLNTNY-LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA 320 (1466)
Q Consensus 246 ~v~~i~~~~~~~~~~v~~~--~g~--~i~~D~Vi~a~G~~p~~~~-l~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD~~ 320 (1466)
+|++++.++++.+ .+.++ +|+ ++++|.||+|+|++|++++ ++..|++++++| |.||+++||+.|+|||+|||+
T Consensus 233 ~v~~i~~~~~~~v-~v~~~~~~G~~~~i~~D~vi~a~G~~p~~~l~l~~~gl~~~~~G-i~vd~~~~t~~~~Iya~GD~~ 310 (466)
T 3l8k_A 233 PVTEVKKIKDDEY-EVIYSTKDGSKKSIFTNSVVLAAGRRPVIPEGAREIGLSISKTG-IVVDETMKTNIPNVFATGDAN 310 (466)
T ss_dssp CEEEEEEEETTEE-EEEECCTTSCCEEEEESCEEECCCEEECCCTTTGGGTCCBCSSS-BCCCTTCBCSSTTEEECGGGT
T ss_pred EEEEEEEcCCCcE-EEEEEecCCceEEEEcCEEEECcCCCcccccchhhcCceeCCCC-EeECCCccCCCCCEEEEEecC
Confidence 9999987531233 35555 565 8999999999999999986 788899999999 999999999999999999998
Q ss_pred cccCccCCCCcceeccHHHHHHHHHHHHHHhcCC--C---CCCCCCCcccccccceeeEEEEeecCC-----ceEEEe--
Q psy2951 321 YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEK--K---TSLSTIPFFWTMLFGVGFRFAGYAAGH-----TQVDIV-- 388 (1466)
Q Consensus 321 ~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~--~---~~~~~~p~~~s~~~~~~~~~~G~~~~~-----~~~~~~-- 388 (1466)
..+ ..+..|..||+.+|.||++. . ..+..+|+ .-.....+..+|.+... .++...
T Consensus 311 ~~~-----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~--~~~~~~~~a~vG~te~~a~~~g~~~~~~~~ 377 (466)
T 3l8k_A 311 GLA-----------PYYHAAVRMSIAAANNIMANGMPVDYVDVKSIPV--TIYTIPSLSYVGILPSKARKMGIEIVEAEY 377 (466)
T ss_dssp CSC-----------CSHHHHHHHHHHHHHHHHTTTSCCCCCCSTTSCE--EECSSSCEEEEECCHHHHHHHTCCEEEEEE
T ss_pred CCC-----------ccHhHHHHHHHHHHHHHhCCCCCccccCCCCCcE--EEECCCCeEEecCCHHHHHhCCCCEEEEEE
Confidence 753 45678999999999999975 2 24455553 22223345556654321 111110
Q ss_pred ---c------ccCCCeEEEEEEcC--CEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 389 ---G------DLEALKFTAYYSNA--DKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 389 ---g------~~~~~~~~~~~~~~--~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
. ..+..+|.+++.+. ++|+|++++|. ++++..++ .+|+++.+. +++.|||++|.+
T Consensus 378 ~~~~~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~-~ai~~~~t~~~l~~~~~~~Pt~~e~~ 450 (466)
T 3l8k_A 378 NMEEDVSAQIYGQKEGVLKLIFERGSMRLIGAWMIGVHSQYLINELG-LAVAYGLNAKQLASFAEQHPSTNEII 450 (466)
T ss_dssp EGGGSHHHHHHTCCCCEEEEEEETTTCBEEEEEEESTTHHHHHHHHH-HHHHTTCBHHHHHHCCCCTTSTTHHH
T ss_pred EcccChhheecCCCeEEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHCcCCHHHHhccccCCCChHHHH
Confidence 0 01357899998874 89999999998 45666666 999999886 799999999998
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=356.84 Aligned_cols=379 Identities=19% Similarity=0.243 Sum_probs=270.8
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCC-------CCCCC----Cccc----------------hhccc
Q psy2951 41 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENF-------LPYDR----VKLS----------------KQLDI 93 (1466)
Q Consensus 41 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~-------~~~~~----~~~~----------------~~~~~ 93 (1466)
+.++||+||||||||++||..|++.|+++.|++..+... +.... +..+ ..+..
T Consensus 7 ~~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~g~ 86 (483)
T 3dgh_A 7 SYDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAYGW 86 (483)
T ss_dssp CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTB
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHHHHHHhcCc
Confidence 457899999999999999999999999988875311110 00000 0000 00000
Q ss_pred --------Cccccc-----------ccChhhhhcCCeEEEeCceEEEeccccccEEEecCCc-EEecCEEEEccCCCCCC
Q psy2951 94 --------KADSIL-----------LRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGT-SIDFTKIYLATGSSPRT 153 (1466)
Q Consensus 94 --------~~~~~~-----------~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~-~~~~d~lviAtG~~~~~ 153 (1466)
+...+. ......++..+++++.+...+. +.....+.+.++. ++.||+||||||++|+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~--~~~~v~v~~~~g~~~~~~d~lviATGs~p~~ 164 (483)
T 3dgh_A 87 NVDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFV--DSHTLLAKLKSGERTITAQTFVIAVGGRPRY 164 (483)
T ss_dssp CCCCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEE--ETTEEEEECTTCCEEEEEEEEEECCCEEECC
T ss_pred ccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEc--cCCEEEEEeCCCeEEEEcCEEEEeCCCCcCC
Confidence 001111 1122345677999999987654 3344556556664 79999999999999986
Q ss_pred CCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHH
Q psy2951 154 ISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKL 233 (1466)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~ 233 (1466)
+ .+++.+.. ..+..+...+. ..+++++|||+|++|+|+|..+++.|.+|+++++. .. .+.+++++.+.+.+.
T Consensus 165 p-~i~G~~~~--~~~~~~~~~~~---~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~-l~~~d~~~~~~l~~~ 236 (483)
T 3dgh_A 165 P-DIPGAVEY--GITSDDLFSLD---REPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRS-IV-LRGFDQQMAELVAAS 236 (483)
T ss_dssp C-SSTTHHHH--CBCHHHHTTCS---SCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-CS-STTSCHHHHHHHHHH
T ss_pred C-CCCCcccc--cCcHHHHhhhh---hcCCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCC-CC-CcccCHHHHHHHHHH
Confidence 5 45554221 12445544433 24679999999999999999999999999999884 33 357789999999999
Q ss_pred HHhCCcEEEcCceEEEEEecCCCCeEEEEcCCCc-----EEeccEEEEeeccccCcccc--ccCCceecCCccEEECCCC
Q psy2951 234 FESKGVKFVMKANVSSFEKNEKNDVTAANLDNGT-----TIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVNEYL 306 (1466)
Q Consensus 234 l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~~~g~-----~i~~D~Vi~a~G~~p~~~~l--~~~gl~~~~~g~i~vd~~~ 306 (1466)
++++||++++++.+++++..+++.+ .+.+.++. ++++|.||+|+|++|+++++ +..|+++++ |+|.||+++
T Consensus 237 l~~~Gv~i~~~~~v~~i~~~~~~~~-~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~-G~i~vd~~~ 314 (483)
T 3dgh_A 237 MEERGIPFLRKTVPLSVEKQDDGKL-LVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQK-DKIPVDSQE 314 (483)
T ss_dssp HHHTTCCEEETEEEEEEEECTTSCE-EEEEEETTTCCEEEEEESEEEECSCEEECCGGGTGGGTTCCCBT-TBBCCCTTC
T ss_pred HHhCCCEEEeCCEEEEEEEcCCCcE-EEEEecCCCCceeEEEcCEEEECcccccCcCcCCchhcCccccC-CEEEECcCC
Confidence 9999999999999999987544333 34444332 79999999999999999886 788999988 999999999
Q ss_pred CcCCCCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCCC---CCCCCCcccccccceeeEEEEeecCC-
Q psy2951 307 ETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT---SLSTIPFFWTMLFGVGFRFAGYAAGH- 382 (1466)
Q Consensus 307 ~t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~---~~~~~p~~~s~~~~~~~~~~G~~~~~- 382 (1466)
+|+.|+|||+|||+... +..+..|..||+.+|+||++... .+..+|+.+-. ...+..+|.+...
T Consensus 315 ~t~~~~IyA~GD~~~~~----------~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~--~p~~a~vGlte~~a 382 (483)
T 3dgh_A 315 ATNVANIYAVGDIIYGK----------PELTPVAVLAGRLLARRLYGGSTQRMDYKDVATTVFT--PLEYACVGLSEEDA 382 (483)
T ss_dssp BCSSTTEEECSTTBTTS----------CCCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCEEECS--SSEEEEEECCHHHH
T ss_pred ccCCCCEEEEEcccCCC----------CccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEEC--CCccEEEeCCHHHH
Confidence 99999999999998421 24567899999999999998643 45666743221 2234555654311
Q ss_pred ------ceEEE-----ec-------ccCCCeEEEEEEc---CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----cc
Q psy2951 383 ------TQVDI-----VG-------DLEALKFTAYYSN---ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LP 434 (1466)
Q Consensus 383 ------~~~~~-----~g-------~~~~~~~~~~~~~---~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~ 434 (1466)
..+.. .. ..+..+|.+++.+ +++|+|++++|. +++++.++ .+|+++.+. ++
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~~~~~~~ilG~~~~g~~a~e~i~~~~-~ai~~~~t~~~l~~~~ 461 (483)
T 3dgh_A 383 VKQFGADEIEVFHGYYKPTEFFIPQKSVRYCYLKAVAERHGDQRVYGLHYIGPVAGEVIQGFA-AALKSGLTINTLINTV 461 (483)
T ss_dssp HHHHCGGGEEEEEEECCCGGGTTTTCCCTTCEEEEEEESSTTCBEEEEEEEETTHHHHHHHHH-HHHHTTCBHHHHHTSC
T ss_pred HhhCCCCCEEEEEEeecchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhhcc
Confidence 11111 10 0135689998876 389999999998 55677776 999999886 89
Q ss_pred ccCcccchhh
Q psy2951 435 HSHRCLGVVL 444 (1466)
Q Consensus 435 ~~~p~~~e~~ 444 (1466)
|+|||++|.+
T Consensus 462 ~~hPt~~e~~ 471 (483)
T 3dgh_A 462 GIHPTTAEEF 471 (483)
T ss_dssp CCSSCSGGGG
T ss_pred cCCCChHHHH
Confidence 9999999998
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-35 Score=360.57 Aligned_cols=373 Identities=21% Similarity=0.244 Sum_probs=274.4
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCC----Cccch----------------hccc--------
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR----VKLSK----------------QLDI-------- 93 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~~----~~~~~----------------~~~~-------- 93 (1466)
.++||+|||||+||++||+.|++.|++|.|++.+. ..... +..++ .+..
T Consensus 25 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~---~GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 101 (484)
T 3o0h_A 25 FDFDLFVIGSGSGGVRAARLAGALGKRVAIAEEYR---IGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKYADPIFN 101 (484)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC---TTHHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTBCCCCCEEC
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCcCEEEEEeCCC---CCCceeccCccccHHHHHHHHHHHHHHHHHhCCcccCCCccC
Confidence 46899999999999999999999999988876521 11000 00000 0000
Q ss_pred ----------CcccccccChhhhhcCCeEEEeCceEEEeccccccEEEec-CCcEEecCEEEEccCCCCCCCCCCCCCCc
Q psy2951 94 ----------KADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQ-DGTSIDFTKIYLATGSSPRTISQADGVNK 162 (1466)
Q Consensus 94 ----------~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~-~~~~~~~d~lviAtG~~~~~~~~~~~~~~ 162 (1466)
....+...+...+++.+++++.+.....+ ..++.+. ++..+.||+||+|||++|...|.+++.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~----~~~v~v~~~~~~~~~d~lviAtG~~p~~~p~i~G~~~ 177 (484)
T 3o0h_A 102 WEKLVAAKNKEISRLEGLYREGLQNSNVHIYESRAVFVD----EHTLELSVTGERISAEKILIATGAKIVSNSAIKGSDL 177 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEE----TTEEEETTTCCEEEEEEEEECCCEEECCC--CBTGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEee----CCEEEEecCCeEEEeCEEEEccCCCcccCCCCCCccc
Confidence 00112223345566789999999766543 3567776 77889999999999999873334555543
Q ss_pred EEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEE
Q psy2951 163 VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFV 242 (1466)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~ 242 (1466)
++ +..+...+. ..+++++|||+|++|+|+|..+++.|.+|+++++.+.++ +.+++++.+.+.+.+++.||+++
T Consensus 178 ~~---~~~~~~~~~---~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-~~~~~~~~~~l~~~l~~~Gv~i~ 250 (484)
T 3o0h_A 178 CL---TSNEIFDLE---KLPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLIL-RNFDYDLRQLLNDAMVAKGISII 250 (484)
T ss_dssp SB---CTTTGGGCS---SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-TTSCHHHHHHHHHHHHHHTCEEE
T ss_pred cc---cHHHHHhHH---hcCCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCccc-cccCHHHHHHHHHHHHHCCCEEE
Confidence 22 223332222 346899999999999999999999999999999988766 46789999999999999999999
Q ss_pred cCceEEEEEecCCCCeEEEEcCCCcEEeccEEEEeeccccCccc--cccCCceecCCccEEECCCCCcCCCCEEEecccc
Q psy2951 243 MKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA 320 (1466)
Q Consensus 243 ~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD~~ 320 (1466)
++++|++++.++ +.+ .+.+.+|+++++|.||+|+|++|++.+ ++..|++++++|+|.||++++|+.|+|||+|||+
T Consensus 251 ~~~~V~~i~~~~-~~v-~v~~~~g~~i~aD~Vi~A~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~ 328 (484)
T 3o0h_A 251 YEATVSQVQSTE-NCY-NVVLTNGQTICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEKMTTNVSHIWAVGDVT 328 (484)
T ss_dssp SSCCEEEEEECS-SSE-EEEETTSCEEEESEEEECCCEEECCTTCCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECGGGG
T ss_pred eCCEEEEEEeeC-CEE-EEEECCCcEEEcCEEEEeeCCCcCCCCCChhhcCceECCCCCEeECCCCCCCCCCEEEEEecC
Confidence 999999998754 333 577888889999999999999999987 5778999999999999999999999999999998
Q ss_pred cccCccCCCCcceeccHHHHHHHHHHHHHHhcCCCC---CCCCCCcccccccceeeEEEEeecCC-----ceE-----EE
Q psy2951 321 YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT---SLSTIPFFWTMLFGVGFRFAGYAAGH-----TQV-----DI 387 (1466)
Q Consensus 321 ~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~---~~~~~p~~~s~~~~~~~~~~G~~~~~-----~~~-----~~ 387 (1466)
+.+ ..+..|..||+.+|.||++... .+..+|+.. .....+..+|.+... ..+ .+
T Consensus 329 ~~~-----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~~--~~~p~~a~vGlte~~a~~~g~~~~~~~~~~ 395 (484)
T 3o0h_A 329 GHI-----------QLTPVAIHDAMCFVKNAFENTSTTPDYDLITTAV--FSQPEIGTVGLSEEDALHRYKRVEIYRTVF 395 (484)
T ss_dssp TSC-----------CCHHHHHHHHHHHHHHHHC---CCCCCTTCCEEE--CCSSCEEEEECCHHHHHHHCSEEEEEEEEE
T ss_pred CCC-----------cCHHHHHHHHHHHHHHHcCCCCCcCCCCCCcEEE--ECCCCEEEeeCCHHHHHHcCCCEEEEEecC
Confidence 743 3466899999999999997542 455666421 112234445543311 111 11
Q ss_pred ec------ccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 388 VG------DLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 388 ~g------~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
.. .-+..+|.+++.+ +++|+|++++|. ++++..++ .+|+++.+. ++++|||++|.+
T Consensus 396 ~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~-~ai~~~~t~~~l~~~~~~hPt~~e~~ 466 (484)
T 3o0h_A 396 RPMRNVLSGSPEKMFMKLVVDGESRIVVGAHVLGENAGEIAQLIG-ISLKGKLTKDIFDKTMAVHPTMSEEL 466 (484)
T ss_dssp CCHHHHHHTCCCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHH-HHHHTTCBHHHHHHSCCCSSCSGGGG
T ss_pred CcchhhccCCCCcEEEEEEEECCCCEEEEEEEECcCHHHHHHHHH-HHHHCCCCHHHHhccccCCCChHHHH
Confidence 11 1135789998887 489999999998 45677766 999999886 899999999998
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=356.27 Aligned_cols=381 Identities=19% Similarity=0.256 Sum_probs=268.2
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCC------CCCCCC----Cccch----------------hccc-
Q psy2951 41 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN------FLPYDR----VKLSK----------------QLDI- 93 (1466)
Q Consensus 41 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~------~~~~~~----~~~~~----------------~~~~- 93 (1466)
+.++||+||||||||++||..|++.|.++.|++..+.. .+.... +..++ .+..
T Consensus 30 ~~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~g~~ 109 (519)
T 3qfa_A 30 SYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWK 109 (519)
T ss_dssp SCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTBC
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhcCcc
Confidence 45689999999999999999999999988886542210 010000 00000 0000
Q ss_pred -------Ccccc-----------cccChhhhhcCCeEEEeCceEEEeccccccEEEecCCc--EEecCEEEEccCCCCCC
Q psy2951 94 -------KADSI-----------LLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGT--SIDFTKIYLATGSSPRT 153 (1466)
Q Consensus 94 -------~~~~~-----------~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~--~~~~d~lviAtG~~~~~ 153 (1466)
+...+ ...+...++..+++++.+...+. +....++...++. ++.||+||||||++|+.
T Consensus 110 ~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g~a~~~--d~~~v~v~~~~g~~~~i~~d~lViATGs~p~~ 187 (519)
T 3qfa_A 110 VEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFI--GPHRIKATNNKGKEKIYSAERFLIATGERPRY 187 (519)
T ss_dssp CCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEE--ETTEEEEECTTCCCCEEEEEEEEECCCEEECC
T ss_pred cCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEe--eCCEEEEEcCCCCEEEEECCEEEEECCCCcCC
Confidence 00001 11122345667999999987654 3344555555554 79999999999999986
Q ss_pred CCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHH
Q psy2951 154 ISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKL 233 (1466)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~ 233 (1466)
+ .+++... ...+..+...+. ..+++++|||+|++|+|+|..|+++|.+||++++. . +.+.+++++.+.+.+.
T Consensus 188 p-~i~G~~~--~~~t~~~~~~l~---~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~-~-~l~~~d~~~~~~~~~~ 259 (519)
T 3qfa_A 188 L-GIPGDKE--YCISSDDLFSLP---YCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-I-LLRGFDQDMANKIGEH 259 (519)
T ss_dssp C-CCTTHHH--HCBCHHHHTTCS---SCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-C-SSTTSCHHHHHHHHHH
T ss_pred C-CCCCccC--ceEcHHHHhhhh---hcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecc-c-ccccCCHHHHHHHHHH
Confidence 5 4555332 122445554433 23568999999999999999999999999999985 3 3467899999999999
Q ss_pred HHhCCcEEEcCceEEEEEecCC---CCeE-EEEcCCC-c--EEeccEEEEeeccccCccc--cccCCceec-CCccEEEC
Q psy2951 234 FESKGVKFVMKANVSSFEKNEK---NDVT-AANLDNG-T--TIPADLVIVGIGTVLNTNY--LDGKGVELN-GQKAVVVN 303 (1466)
Q Consensus 234 l~~~GV~i~~~~~v~~i~~~~~---~~~~-~v~~~~g-~--~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~-~~g~i~vd 303 (1466)
|++.||++++++.+++++..++ +.+. .+...++ + ++++|.|++|+|++||+++ ++..|++++ ++|+|.||
T Consensus 260 l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~~G~I~Vd 339 (519)
T 3qfa_A 260 MEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVT 339 (519)
T ss_dssp HHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEESCSSSCSTTTTCCCCTTTCCBCCC
T ss_pred HHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcccCCCCChhhcCcEEcCCCCeEeeC
Confidence 9999999999988888765322 2222 2233444 2 5789999999999999986 678889998 57999999
Q ss_pred CCCCcCCCCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCCC---CCCCCCcccccccceeeEEEEeec
Q psy2951 304 EYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT---SLSTIPFFWTMLFGVGFRFAGYAA 380 (1466)
Q Consensus 304 ~~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~---~~~~~p~~~s~~~~~~~~~~G~~~ 380 (1466)
+++||+.|+|||+|||+... +..+..|..||+.+|+||++... .+..+|+. ......+..+|.+.
T Consensus 340 ~~~~Ts~~~IyA~GD~~~g~----------~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~--~~~~p~~a~vGlte 407 (519)
T 3qfa_A 340 DEEQTNVPYIYAIGDILEDK----------VELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTT--VFTPLEYGACGLSE 407 (519)
T ss_dssp TTSBCSSTTEEECGGGBSSS----------CCCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCEE--ECSSSCEEEEECCH
T ss_pred CCCccCCCCEEEEEeccCCC----------CccHHHHHHHHHHHHHHHcCCCCccCCCCcCcEE--EECCCceEEecCCH
Confidence 99999999999999998321 24567899999999999997643 34555532 22233345555543
Q ss_pred CC-------ceEE-----Ee-------cccCCCeEEEEEEc---CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc----
Q psy2951 381 GH-------TQVD-----IV-------GDLEALKFTAYYSN---ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS---- 432 (1466)
Q Consensus 381 ~~-------~~~~-----~~-------g~~~~~~~~~~~~~---~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~---- 432 (1466)
.. ..+. +. +..+..+|.+++.+ +++|+|++++|. +++++.++ .+|+++.+.
T Consensus 408 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~~ilGa~i~g~~a~e~i~~~~-~ai~~~~t~~~l~ 486 (519)
T 3qfa_A 408 EKAVEKFGEENIEVYHSYFWPLEWTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFA-AALKCGLTKKQLD 486 (519)
T ss_dssp HHHHHHHCGGGEEEEEEEECCHHHHTTTCCTTTEEEEEEEETTTTCEEEEEEEESTTHHHHHHHHH-HHHHTTCBHHHHH
T ss_pred HHHHhhCCCCCEEEEEEeccchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHh
Confidence 11 1121 11 01135789999886 389999999998 46777776 999999886
Q ss_pred -ccccCcccchhh
Q psy2951 433 -LPHSHRCLGVVL 444 (1466)
Q Consensus 433 -~~~~~p~~~e~~ 444 (1466)
++++|||++|.+
T Consensus 487 ~~~~~hPt~~E~~ 499 (519)
T 3qfa_A 487 STIGIHPVCAEVF 499 (519)
T ss_dssp HSCCCTTCGGGGG
T ss_pred ccccCCCChHHHH
Confidence 899999999998
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-35 Score=359.62 Aligned_cols=364 Identities=20% Similarity=0.255 Sum_probs=270.0
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCC---C-CCchhhc----------------c-------Cc
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR---V-KLSKQLD----------------I-------KA 1118 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~---~-~l~~~~~----------------~-------~~ 1118 (1466)
.++|+|||||+||+++|..|++.|. +|+|||+++.++... . ..++.+. . ..
T Consensus 6 ~~dVvIIGaG~aGl~aA~~l~~~G~--~V~liE~~~~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi~~~~~~~~~ 83 (482)
T 1ojt_A 6 EYDVVVLGGGPGGYSAAFAAADEGL--KVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPELDI 83 (482)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTC--CEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCCH
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCC--eEEEEeCCCCCCCceeeecccchHHHHHHHHHHHHHHHHHhCCcccCCCccCH
Confidence 3689999999999999999999998 999999976543110 0 0000000 0 00
Q ss_pred ccccc-----------cChhhhccCCcEEEcCCeEEEeecCCCCeEEecCC------------cEEecCeEEEecCCCCC
Q psy2951 1119 DSILL-----------RTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDG------------TSIDFTKIYLATGSSPR 1175 (1466)
Q Consensus 1119 ~~~~~-----------~~~~~~~~~~v~~~~~~~v~~i~d~~~~~v~~~~g------------~~~~yd~lvlAtG~~~~ 1175 (1466)
..+.. ....++++.+++++.++. ..+ +...-.|.+.+| .++.||+||+|||+.|+
T Consensus 84 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~-~~~-~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtGs~p~ 161 (482)
T 1ojt_A 84 DMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDG-QFL-DPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVT 161 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEE-EEE-ETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEE-EEc-cCCEEEEEecCCcccccccccCcceEEEcCEEEECCCCCCC
Confidence 00000 011345667999998884 446 654333444455 67999999999999998
Q ss_pred cCC-CCCCCCcEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHH
Q psy2951 1176 TIS-QADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERIT 1254 (1466)
Q Consensus 1176 ~~~-~~~g~~~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~ 1254 (1466)
.|+ ++ ....+ .+.+++..+. ..+++++|||+|++|+|+|..|++.|.+|+++++.+++++ .+++++.+.+.
T Consensus 162 ~~~~i~-~~~~v---~~~~~~~~~~---~~~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~-~~~~~~~~~l~ 233 (482)
T 1ojt_A 162 KLPFIP-EDPRI---IDSSGALALK---EVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQ-GADRDLVKVWQ 233 (482)
T ss_dssp CCSSCC-CCTTE---ECHHHHTTCC---CCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSST-TSCHHHHHHHH
T ss_pred CCCCCC-ccCcE---EcHHHHhccc---ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccc-ccCHHHHHHHH
Confidence 887 44 22133 3566765543 2479999999999999999999999999999999998886 68899999999
Q ss_pred HHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCC----CCeeecCEEEEeeccccCccc--cccCCceeeCCCeEEeCCC
Q psy2951 1255 KLFESKGVKFVMKANVSSFEKNEKNDVTAANLDN----GTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEY 1328 (1466)
Q Consensus 1255 ~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~----g~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~ 1328 (1466)
+.++++||+++++++|++++ .++ ....|.+.+ |+++++|.||+|+|..|++++ ++.+|+.++.+|+|.||++
T Consensus 234 ~~l~~~gV~i~~~~~v~~i~-~~~-~~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~ 311 (482)
T 1ojt_A 234 KQNEYRFDNIMVNTKTVAVE-PKE-DGVYVTFEGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVDKQ 311 (482)
T ss_dssp HHHGGGEEEEECSCEEEEEE-EET-TEEEEEEESSSCCSSCEEESCEEECCCEEECGGGTTGGGTTCCCCTTSCCCCCTT
T ss_pred HHHHhcCCEEEECCEEEEEE-EcC-CeEEEEEeccCCCceEEEcCEEEECcCCCcCCCCCChhhcCceeCCCCCEeeCCC
Confidence 99999999999999999998 333 334577766 788999999999999999997 6889999988889999999
Q ss_pred ccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCCCCC--CCCCccc-eeccccccEEEEeeCC--
Q psy2951 1329 LETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS--LSTIPFF-WTMLFGVGFRFAGYAA-- 1403 (1466)
Q Consensus 1329 ~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~~~--~~~~p~~-w~~~~~~~~~~~g~~~-- 1403 (1466)
+||+.|+|||+|||+..|.. ++.|..||++||.||+|...+ +..+|++ |+ +..+-.+|..+
T Consensus 312 ~~t~~~~IyA~GD~~~~~~l-----------~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~---~~~~a~vG~te~~ 377 (482)
T 1ojt_A 312 MRTNVPHIYAIGDIVGQPML-----------AHKAVHEGHVAAENCAGHKAYFDARVIPGVAYT---SPEVAWVGETELS 377 (482)
T ss_dssp SBCSSTTEEECGGGTCSSCC-----------HHHHHHHHHHHHHHHTTCCCCCCCCCCCEEECS---SSCEEEEECCHHH
T ss_pred cccCCCCEEEEEcccCCCcc-----------HHHHHHHHHHHHHHHcCCCccCCCCCCCEEEEc---CCCeEEEeCCHHH
Confidence 99999999999999986543 378999999999999997654 4566755 44 46677777642
Q ss_pred ---CCceEEE-------------cCCcCCceEEEEEE--eCCEEEEEEEecCc--HHHHHHHHHHHcCCCCChhcccc
Q psy2951 1404 ---GHTQVDI-------------VGDLEALKFTAYYS--NADKVLAILTVGMD--PLAAQFAERIKMQKYIQKDQIEN 1461 (1466)
Q Consensus 1404 ---~~~~~~~-------------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 1461 (1466)
...++.+ .+ ++..|+++++ ++++|+|+..+|.. ..+..+.-+|+.+ ++.++|++
T Consensus 378 a~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~--~~~~~l~~ 451 (482)
T 1ojt_A 378 AKASARKITKANFPWAASGRAIANG--CDKPFTKLIFDAETGRIIGGGIVGPNGGDMIGEVCLAIEMG--CDAADIGK 451 (482)
T ss_dssp HHHHTCCEEEEEEEGGGCHHHHHTT--CCSCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTT--CBHHHHHT
T ss_pred HHhcCCCEEEEEEEcCcchHHhhcC--CCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC--CCHHHHhc
Confidence 0111221 12 3456888888 57999999999996 3355566677776 44555533
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-35 Score=354.35 Aligned_cols=364 Identities=22% Similarity=0.302 Sum_probs=270.2
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCC----CCch-----------------hhcc-------C
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV----KLSK-----------------QLDI-------K 1117 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~----~l~~-----------------~~~~-------~ 1117 (1466)
+++|+|||||+||++||..|++.|. +|+|||+++ ++.... ..++ .+.. +
T Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~--~V~liE~~~-~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~ 80 (450)
T 1ges_A 4 HYDYIAIGGGSGGIASINRAAMYGQ--KCALIEAKE-LGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFN 80 (450)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTC--CEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEEC
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCC--eEEEEcCCC-CCCcccccCccChHHHHHHHHHHHHHHHHHHhcCccCCCCccC
Confidence 4689999999999999999999988 999999974 221000 0000 0000 0
Q ss_pred cccc-----------cccChhhhccCCcEEEcCCeEEEeecCCCCeEEecCCcEEecCeEEEecCCCCCcCCCCCCCCcE
Q psy2951 1118 ADSI-----------LLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKV 1186 (1466)
Q Consensus 1118 ~~~~-----------~~~~~~~~~~~~v~~~~~~~v~~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~~v 1186 (1466)
...+ .......+.+.+++++.++ +..+ ++ ++|.+ ++.++.||+||+|||++|+.|++| |.+.
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~i-~~--~~v~~-~g~~~~~d~lviAtGs~p~~p~i~-g~~~- 153 (450)
T 1ges_A 81 WETLIASRTAYIDRIHTSYENVLGKNNVDVIKGF-ARFV-DA--KTLEV-NGETITADHILIATGGRPSHPDIP-GVEY- 153 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESC-CEEE-ET--TEEEE-TTEEEEEEEEEECCCEEECCCCST-TGGG-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEe-cC--CEEEE-CCEEEEeCEEEECCCCCCCCCCCC-Cccc-
Confidence 0000 0001123456799999997 6778 75 57887 778899999999999999999998 7653
Q ss_pred EEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEc
Q psy2951 1187 FYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVM 1266 (1466)
Q Consensus 1187 ~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~ 1266 (1466)
..+.+++..+. ..+++++|||+|++|+|+|..|++.|.+|+++++.+.+++ .+++++.+.+.+.+++.||++++
T Consensus 154 --~~~~~~~~~~~---~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~Gv~i~~ 227 (450)
T 1ges_A 154 --GIDSDGFFALP---ALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP-SFDPMISETLVEVMNAEGPQLHT 227 (450)
T ss_dssp --SBCHHHHHHCS---SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHHSCEEEC
T ss_pred --eecHHHhhhhh---hcCCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhh-hhhHHHHHHHHHHHHHCCCEEEe
Confidence 23566665543 3478999999999999999999999999999999988776 68899999999999999999999
Q ss_pred CceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccCcc-c-cccCCceeeCCCeEEeCCCccccCCCEEEeccccc
Q psy2951 1267 KANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTN-Y-LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAY 1344 (1466)
Q Consensus 1267 ~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~~~-~-~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~ 1344 (1466)
+++|++++ .+++....|.+.+|+++++|.||+|+|..|+++ + ++.+|+.++.+|+|.||++++|+.|+|||+|||+.
T Consensus 228 ~~~v~~i~-~~~~~~~~v~~~~g~~i~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~~~t~~~~IyA~GD~~~ 306 (450)
T 1ges_A 228 NAIPKAVV-KNTDGSLTLELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTG 306 (450)
T ss_dssp SCCEEEEE-ECTTSCEEEEETTSCEEEESEEEECSCEEESCTTSCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECSGGGT
T ss_pred CCEEEEEE-EeCCcEEEEEECCCcEEEcCEEEECCCCCcCCCCCCchhcCceECCCCCEeECCCCccCCCCEEEEeccCC
Confidence 99999998 333233468889999999999999999999998 3 57789999988999999999999999999999986
Q ss_pred CCCccCCCceeeeecHHHHHHHHHHHHHHhcCCC----CCCCCCccceeccccccEEEEeeCC-------CCceEEEcC-
Q psy2951 1345 APLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK----TSLSTIPFFWTMLFGVGFRFAGYAA-------GHTQVDIVG- 1412 (1466)
Q Consensus 1345 ~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~----~~~~~~p~~w~~~~~~~~~~~g~~~-------~~~~~~~~~- 1412 (1466)
.+. .|+.|..||+.||.||+|.. ..|..+|+.. .++..+..+|..+ +.+.+.+..
T Consensus 307 ~~~-----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~--~~~~~~a~vG~~e~~a~~~~g~~~~~~~~~ 373 (450)
T 1ges_A 307 AVE-----------LTPVAVAAGRRLSERLFNNKPDEHLDYSNIPTVV--FSHPPIGTVGLTEPQAREQYGDDQVKVYKS 373 (450)
T ss_dssp SCC-----------CHHHHHHHHHHHHHHHHTTCTTCCCCCSSCCEEE--CCSSCEEEEECCHHHHHHHHCGGGEEEEEE
T ss_pred CCc-----------cHHHHHHHHHHHHHHHcCCCCcccCCCCCCCeEE--ECCCceEEEeCCHHHHHhcCCCCcEEEEEE
Confidence 543 34889999999999999854 2355677541 2346777788752 102232210
Q ss_pred ----------CcCCceEEEEEEe--CCEEEEEEEecCcHH--HHHHHHHHHcCCCCChhcccc
Q psy2951 1413 ----------DLEALKFTAYYSN--ADKVLAILTVGMDPL--AAQFAERIKMQKYIQKDQIEN 1461 (1466)
Q Consensus 1413 ----------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 1461 (1466)
..++..|++..++ +++|+|+..+|.... +..+.-+|+.+ ++.++|++
T Consensus 374 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~--~t~~~l~~ 434 (450)
T 1ges_A 374 SFTAMYTAVTTHRQPCRMKLVCVGSEEKIVGIHGIGFGMDEMLQGFAVALKMG--ATKKDFDN 434 (450)
T ss_dssp EEECHHHHTSSSCCEEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTT--CBHHHHHT
T ss_pred ECchhhHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC--CCHHHHhc
Confidence 1134567777764 789999999998522 23333345555 45555543
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-34 Score=354.95 Aligned_cols=364 Identities=20% Similarity=0.294 Sum_probs=270.6
Q ss_pred CCcEEEECCchHHHHHHHHHHh-cCCCCcEEEEcC--------CCCCCCCCCC----Cchhh----------------cc
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQ-NGFTGKLYFITD--------ENFLPYDRVK----LSKQL----------------DI 1116 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~-~g~~~~i~li~~--------~~~~~~~~~~----l~~~~----------------~~ 1116 (1466)
+++|+|||||+||++||..|++ .|. +|+|||+ ...++..... -++.+ ..
T Consensus 7 ~~dvvVIGgG~aGl~aA~~la~~~G~--~V~liE~~~~~~~~~~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~ 84 (495)
T 2wpf_A 7 AFDLVVIGAGSGGLEAGWNAATLYGK--RVAVVDVQTSHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDHLRESAGFGW 84 (495)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHCC--CEEEEESCSSSBTTTBCBTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTTE
T ss_pred ccCEEEECCChhHHHHHHHHHHhcCC--eEEEEecccccccccCCCCCCeeecCCcchHHHHHHHHHHHHHHhHHHhcCc
Confidence 4689999999999999999999 998 9999993 2222110000 00000 00
Q ss_pred ---------Cccccc-----------ccChhhhccC-CcEEEcCCeEEEeecCCCCeEEec---C-----CcEEecCeEE
Q psy2951 1117 ---------KADSIL-----------LRTEEFYKDN-DIHVIKGKKIISDSELNEKKIKLQ---D-----GTSIDFTKIY 1167 (1466)
Q Consensus 1117 ---------~~~~~~-----------~~~~~~~~~~-~v~~~~~~~v~~i~d~~~~~v~~~---~-----g~~~~yd~lv 1167 (1466)
+...+. ......+++. +|+++.++ +..+ +. ++|.++ + +..+.||+||
T Consensus 85 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~-~~~i-~~--~~v~v~~~~~~~~~~~~~~~~d~lV 160 (495)
T 2wpf_A 85 EFDGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLGW-GSLE-SK--NVVVVRETADPKSAVKERLQADHIL 160 (495)
T ss_dssp ECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEEESE-EEEE-ET--TEEEEESSSSTTSCEEEEEEEEEEE
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeE-EEEe-eC--CEEEEeecCCccCCCCeEEEcCEEE
Confidence 000000 0001234566 99999987 8888 75 678876 4 6789999999
Q ss_pred EecCCCCCcCCCCCCCCcEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHHHhcC---CCeEEEEcCCCcCCccc
Q psy2951 1168 LATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASK---VKSVTVVGRGAVPFQES 1244 (1466)
Q Consensus 1168 lAtG~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~~---g~~v~vv~~~~~~~~~~ 1244 (1466)
||||++|+.|++| |.+.++ +.+++..+. ..+++++|||+|++|+|+|..|++. |.+|+++++.+++++ .
T Consensus 161 iATGs~p~~p~i~-G~~~~~---~~~~~~~~~---~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~-~ 232 (495)
T 2wpf_A 161 LATGSWPQMPAIP-GIEHCI---SSNEAFYLP---EPPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILR-G 232 (495)
T ss_dssp ECCCEEECCCCCT-TGGGCE---EHHHHTTCS---SCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCT-T
T ss_pred EeCCCCcCCCCCC-Cccccc---cHHHHHhhh---hcCCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCcccc-c
Confidence 9999999999998 875433 345554433 3478999999999999999999999 999999999998885 6
Q ss_pred ccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccCcc-c-cccCCceeeCCCe
Q psy2951 1245 LGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTN-Y-LDGKGVELNGQKA 1322 (1466)
Q Consensus 1245 ~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~~~-~-~~~~gl~~~~~G~ 1322 (1466)
+++++.+.+.+.++++||+++++++|++++ .+++....|.+.+|+++++|.||+|+|..|+++ + ++.+|+.++.+|+
T Consensus 233 ~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~-~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~ 311 (495)
T 2wpf_A 233 FDETIREEVTKQLTANGIEIMTNENPAKVS-LNTDGSKHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGG 311 (495)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEESCCEEEEE-ECTTSCEEEEETTSCEEEESEEEECSCEEECCGGGTGGGTTCCBCTTSS
T ss_pred cCHHHHHHHHHHHHhCCCEEEeCCEEEEEE-EcCCceEEEEECCCcEEEcCEEEECCCCcccccccchhhcCccCCCCCC
Confidence 889999999999999999999999999998 333334568889999999999999999999998 4 6788999998889
Q ss_pred EEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCCCC---CCCCCccceeccccccEEEE
Q psy2951 1323 VVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT---SLSTIPFFWTMLFGVGFRFA 1399 (1466)
Q Consensus 1323 i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~~---~~~~~p~~w~~~~~~~~~~~ 1399 (1466)
|.||+++||+.|+|||+|||+..+. .|+.|..||++||.||+|... .|..+| |...++..+..+
T Consensus 312 i~Vd~~~~t~~~~IyA~GD~~~~~~-----------l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p--~~~~~~~~~a~v 378 (495)
T 2wpf_A 312 VQVDEFSRTNVPNIYAIGDITDRLM-----------LTPVAINEGAALVDTVFGNKPRKTDHTRVA--SAVFSIPPIGTC 378 (495)
T ss_dssp BCCCTTCBCSSTTEEECGGGGCSCC-----------CHHHHHHHHHHHHHHHHSSCCCCCCCSSCE--EEECCSSCEEEE
T ss_pred EEECCCCccCCCCEEEEeccCCCcc-----------CHHHHHHHHHHHHHHhcCCCCCcCCCCCCC--EEEECCCCeEEE
Confidence 9999999999999999999986433 358999999999999998542 455666 333446788888
Q ss_pred eeCC-----CCceEEE-cC----------CcCCceE-EEEEEe--CCEEEEEEEecCcHH--HHHHHHHHHcCCCCChhc
Q psy2951 1400 GYAA-----GHTQVDI-VG----------DLEALKF-TAYYSN--ADKVLAILTVGMDPL--AAQFAERIKMQKYIQKDQ 1458 (1466)
Q Consensus 1400 g~~~-----~~~~~~~-~~----------~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 1458 (1466)
|+.+ ..+.+.+ .. +.++..| ++.+++ +++|+|+..+|.... +..+.-+|+.+ ++.++
T Consensus 379 Gl~e~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~--~t~~~ 456 (495)
T 2wpf_A 379 GLIEEVAAKEFEKVAVYMSSFTPLMHNISGSKYKKFVAKIVTNHSDGTVLGVHLLGDGAPEIIQAVGVCLRLN--AKISD 456 (495)
T ss_dssp ECCHHHHHHHSSEEEEEEEEECCTHHHHHSCTTCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTT--CBHHH
T ss_pred eCCHHHHHhcCCCEEEEEEecCchhhhhhcCCCcEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC--CCHHH
Confidence 9753 1222322 10 1134568 887775 689999999998632 34455566665 34444
Q ss_pred c
Q psy2951 1459 I 1459 (1466)
Q Consensus 1459 ~ 1459 (1466)
|
T Consensus 457 l 457 (495)
T 2wpf_A 457 F 457 (495)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-34 Score=350.19 Aligned_cols=358 Identities=23% Similarity=0.308 Sum_probs=271.1
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCC---CC-CCchhhc----------------------cCcc
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD---RV-KLSKQLD----------------------IKAD 1119 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~---~~-~l~~~~~----------------------~~~~ 1119 (1466)
.++|+|||||+||++||..|++.|. +|+|||+++ ++.. .. ..++.+. .+..
T Consensus 6 ~~dvvIIG~G~aG~~aA~~l~~~g~--~V~lie~~~-~GG~~~~~g~iP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (464)
T 2eq6_A 6 TYDLIVIGTGPGGYHAAIRAAQLGL--KVLAVEAGE-VGGVCLNVGCIPTKALLHAAETLHHLKVAEGFGLKAKPELDLK 82 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTC--CEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHHHHGGGTEECCCEECHH
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCC--eEEEEeCCC-CCCCCCCcChHHHHHHHHHHHHHHHHHhHHhcCCCCCCCcCHH
Confidence 3689999999999999999999998 999999986 2210 00 0011000 0000
Q ss_pred cccc-----------cChhhhccCCcEEEcCCeEEEeecCCCCeEEecCCcEEecCeEEEecCCCCCcCC-CCCCCCcEE
Q psy2951 1120 SILL-----------RTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTIS-QADGVNKVF 1187 (1466)
Q Consensus 1120 ~~~~-----------~~~~~~~~~~v~~~~~~~v~~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~~~~~~-~~~g~~~v~ 1187 (1466)
.+.. ....++++.+++++.++ +..+ ++ ++|.+. |.++.||+||+|||++|+.|+ ++ |..+++
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~-~~~~-~~--~~v~v~-g~~~~~d~lViATGs~p~~p~gi~-~~~~v~ 156 (464)
T 2eq6_A 83 KLGGWRDQVVKKLTGGVGTLLKGNGVELLRGF-ARLV-GP--KEVEVG-GERYGAKSLILATGSEPLELKGFP-FGEDVW 156 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESC-EEEE-ET--TEEEET-TEEEEEEEEEECCCEEECCBTTBC-CSSSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEeee-EEEc-cC--CEEEEc-cEEEEeCEEEEcCCCCCCCCCCCC-CCCcEE
Confidence 0000 01234566799999998 5567 64 578886 778999999999999999886 66 522433
Q ss_pred EecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcC
Q psy2951 1188 YLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMK 1267 (1466)
Q Consensus 1188 ~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~ 1267 (1466)
+.+++.++.+. .+++++|||+|++|+|+|..|++.|.+|+++++.+++++ .+++++.+.+.+.++++||+++++
T Consensus 157 ---~~~~~~~l~~~--~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~gV~i~~~ 230 (464)
T 2eq6_A 157 ---DSTRALKVEEG--LPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILP-QGDPETAALLRRALEKEGIRVRTK 230 (464)
T ss_dssp ---CHHHHTCGGGC--CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHTTCEEECS
T ss_pred ---cHHHHHhhhhh--cCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCcccc-ccCHHHHHHHHHHHHhcCCEEEcC
Confidence 56777665542 368999999999999999999999999999999988876 678999999999999999999999
Q ss_pred ceEEEEEecCCCcEEEEEcC-C--CC--eeecCEEEEeeccccCccc--cccCCceeeCCCeEEeCCCccccCCCEEEec
Q psy2951 1268 ANVSSFEKNEKNDVTAANLD-N--GT--TIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGG 1340 (1466)
Q Consensus 1268 ~~v~~i~~~~~g~~~~v~l~-~--g~--~i~~D~vv~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~G 1340 (1466)
++|++++ .+++ ...|.+. + |+ ++++|.||+|+|..|++++ ++..|+.++.+|+|.||+++||+.|+|||+|
T Consensus 231 ~~v~~i~-~~~~-~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~Iya~G 308 (464)
T 2eq6_A 231 TKAVGYE-KKKD-GLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDERGFIRVNARMETSVPGVYAIG 308 (464)
T ss_dssp EEEEEEE-EETT-EEEEEEEETTCCSCEEEEESEEEECSCEEESCTTSSHHHHTCCBCTTSCBCCCTTCBCSSTTEEECG
T ss_pred CEEEEEE-EeCC-EEEEEEeecCCCceeEEEcCEEEECCCcccCCCCCChhhcCceecCCCCEEECCCcccCCCCEEEEe
Confidence 9999998 3333 3446665 6 77 8999999999999999986 5778999888889999999999999999999
Q ss_pred ccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCCCC--CCCCCccceeccccccEEEEeeCC------CCceEEE--
Q psy2951 1341 DIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT--SLSTIPFFWTMLFGVGFRFAGYAA------GHTQVDI-- 1410 (1466)
Q Consensus 1341 D~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~~--~~~~~p~~w~~~~~~~~~~~g~~~------~~~~~~~-- 1410 (1466)
||+..|.. ++.|..||+.||.||+|... .+. +|++ ..++..+..+|..+ +.+ +.+
T Consensus 309 D~~~~~~l-----------~~~A~~~g~~aa~~i~g~~~~~~~~-~p~~--~~~~~~~a~vG~~e~~a~~~g~~-~~~~~ 373 (464)
T 2eq6_A 309 DAARPPLL-----------AHKAMREGLIAAENAAGKDSAFDYQ-VPSV--VYTSPEWAGVGLTEEEAKRAGYK-VKVGK 373 (464)
T ss_dssp GGTCSSCC-----------HHHHHHHHHHHHHHHTTCCCCCCCC-CCEE--ECSSSEEEEEECCHHHHHHTTCC-EEEEE
T ss_pred ccCCCccc-----------HHHHHHHHHHHHHHhcCCCcccCCC-CCeE--EECCCCEEEEeCCHHHHHhcCCC-EEEEE
Confidence 99976543 37899999999999999655 345 7754 33457888888753 222 221
Q ss_pred -----------cCCcCCceEEEEEEe--CCEEEEEEEecCcH--HHHHHHHHHHcCCCCChhcc
Q psy2951 1411 -----------VGDLEALKFTAYYSN--ADKVLAILTVGMDP--LAAQFAERIKMQKYIQKDQI 1459 (1466)
Q Consensus 1411 -----------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 1459 (1466)
.+ ++..|++++++ +++|+|+..+|... .+..+.-+|+.+ ++.++|
T Consensus 374 ~~~~~~~~~~~~~--~~~g~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~--~~~~~l 433 (464)
T 2eq6_A 374 FPLAASGRALTLG--GAEGMVKVVGDEETDLLLGVFIVGPQAGELIAEAALALEMG--ATLTDL 433 (464)
T ss_dssp EEGGGCHHHHHTS--CCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTT--CBHHHH
T ss_pred EEcCcchhhhhcC--CCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC--CCHHHH
Confidence 12 24568888875 68999999999973 346666678777 344555
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-34 Score=352.05 Aligned_cols=346 Identities=19% Similarity=0.247 Sum_probs=264.4
Q ss_pred CCeEEEEcCchHHHHHHHHHHHc---CCCccEEEEcCCCCCCCCC--------------------------Cccc---hh
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQN---GFTGKLYFITDENFLPYDR--------------------------VKLS---KQ 642 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~---g~~~~v~~~~~~~~~~~~~--------------------------~~~~---~~ 642 (1466)
++||+|||||+||++||+.|+++ |++ |+++|++. +++.. ..+. ..
T Consensus 2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~--V~liE~~~-~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g~~~~~~~ 78 (499)
T 1xdi_A 2 VTRIVILGGGPAGYEAALVAATSHPETTQ--VTVIDCDG-IGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDD 78 (499)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHCTTTEE--EEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC-----
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCCcCE--EEEEeCCC-cCCcccCcCccchHHHHHHHHHHHHHHHHHhCCCccccCC
Confidence 37999999999999999999999 876 88898875 22110 0000 00
Q ss_pred cccCccccc-----------ccCHhHhhhCCcEEEEceEEEEeccc------cccEEEccCCC--EEecCEEEEcCCCCC
Q psy2951 643 LDIKADSIL-----------LRTEEFYKDNDIHVIKGKKIISDSEL------NEKKIKLQDGT--SIDFTKIYLATGSSP 703 (1466)
Q Consensus 643 ~~~~~~~~~-----------~~~~~~~~~~gv~~~~~~~v~~i~~~------~~~~v~~~~~~--~~~~d~lviAtG~~~ 703 (1466)
...+...+. ..+.+++++.+++++.++ +..+ +. ....+.+.++. .+.||+||+|||++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~i-~~~~~~~~~~~~V~~~~g~~~~~~~d~lviATGs~p 156 (499)
T 1xdi_A 79 AKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGR-GELI-DSTPGLARHRIKATAADGSTSEHEADVVLVATGASP 156 (499)
T ss_dssp -CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESE-EEEC-CSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEE
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEe-cCcccCCCCEEEEEeCCCcEEEEEeCEEEEcCCCCC
Confidence 001111111 123456677899999998 7777 66 34456666676 799999999999999
Q ss_pred CcCCCCCCCC--cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHH
Q psy2951 704 RTISQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGER 781 (1466)
Q Consensus 704 ~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~ 781 (1466)
..|+++ |.+ .++.. .+...+ ...+++++|||+|++|+|+|..|++.|.+|+++++.+.++. .+++++.+.
T Consensus 157 ~~p~i~-g~~~~~v~~~---~~~~~~---~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~-~~d~~~~~~ 228 (499)
T 1xdi_A 157 RILPSA-QPDGERILTW---RQLYDL---DALPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLP-YEDADAALV 228 (499)
T ss_dssp CCCGGG-CCCSSSEEEG---GGGGGC---SSCCSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSC-CSSHHHHHH
T ss_pred CCCCCC-CCCcCcEEeh---hHhhhh---hccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc-ccCHHHHHH
Confidence 999988 766 34433 333222 23479999999999999999999999999999999998774 589999999
Q ss_pred HHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCccc--cccCCceeeCCCcEEeCCCCC
Q psy2951 782 ITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLE 859 (1466)
Q Consensus 782 ~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~ 859 (1466)
+.+.+++.||+++++++|++++.. ++.+ .+.+.+|+++++|.||+|+|++|++++ ++.+|++++++|+|.||+++|
T Consensus 229 l~~~l~~~GV~i~~~~~V~~i~~~-~~~v-~v~~~~g~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~~~ 306 (499)
T 1xdi_A 229 LEESFAERGVRLFKNARAASVTRT-GAGV-LVTMTDGRTVEGSHALMTIGSVPNTSGLGLERVGIQLGRGNYLTVDRVSR 306 (499)
T ss_dssp HHHHHHHTTCEEETTCCEEEEEEC-SSSE-EEEETTSCEEEESEEEECCCEEECCSSSCTTTTTCCCBTTTBCCCCSSSB
T ss_pred HHHHHHHCCCEEEeCCEEEEEEEe-CCEE-EEEECCCcEEEcCEEEECCCCCcCCCcCCchhcCceECCCCCEEECCCcc
Confidence 999999999999999999999853 3333 567788889999999999999999988 788899999899999999999
Q ss_pred CCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccC-CCc--CcccCeeeeeecCceeEEeeccCC---
Q psy2951 860 TNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEK-KTS--LSTIPFFWTMLFGVGFRFAGYAAG--- 933 (1466)
Q Consensus 860 t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~-~~~--~~~~~~~~~~~~~~~~~~~g~~~~--- 933 (1466)
|+.|+|||+|||+..+. .++.|..||+.+|.+|++. ... +..+|+++ +++..+..+|+++.
T Consensus 307 t~~~~IyA~GD~~~~~~-----------l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~--~~~~~~a~vG~~e~~a~ 373 (499)
T 1xdi_A 307 TLATGIYAAGDCTGLLP-----------LASVAAMQGRIAMYHALGEGVSPIRLRTVAATV--FTRPEIAAVGVPQSVID 373 (499)
T ss_dssp CSSTTEEECSGGGTSCS-----------CHHHHHHHHHHHHHHHTTCCCCCCCGGGCEEEE--CSSSEEEEEESCHHHHH
T ss_pred cCCCCEEEEeccCCCcc-----------cHHHHHHHHHHHHHHhcCCCCccCCCCCCcEEE--EecCCceEeCCCHHHHH
Confidence 99999999999997653 3478999999999999986 232 45566433 56777888887652
Q ss_pred ---CCceeEec----------ccccceEEEEEec--CCeEEEEEeecCch
Q psy2951 934 ---HTQVDIVG----------DLEALKFTAYYSN--ADKVLAILTVGMDP 968 (1466)
Q Consensus 934 ---~~~~~~~~----------~~~~~~~~~~~~~--~~~i~g~~~~g~~~ 968 (1466)
.+-....- .-+...|.|++++ +++++|++++|...
T Consensus 374 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k~~~~~~~~~ilG~~~~g~~a 423 (499)
T 1xdi_A 374 AGSVAARTIMLPLRTNARAKMSEMRHGFVKIFCRRSTGVVIGGVVVAPIA 423 (499)
T ss_dssp HTSSCEEEEEEESTTSHHHHHTTCSSCEEEEEEETTTCBEEEEEEEETTH
T ss_pred hCCCCEEEEEEecCcccceeecCCCceEEEEEEECCCCEEEEEEEECCch
Confidence 11111000 1134578999984 69999999999973
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-34 Score=352.85 Aligned_cols=380 Identities=20% Similarity=0.227 Sum_probs=271.3
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCC------CCCCCCC----Cccc----------------hhccc--
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE------NFLPYDR----VKLS----------------KQLDI-- 93 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~------~~~~~~~----~~~~----------------~~~~~-- 93 (1466)
.++||+||||||||++||..|++.|.++.|++..+. ..+.... +..+ ..+..
T Consensus 5 ~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~~~~~g~~~ 84 (488)
T 3dgz_A 5 QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYGWEV 84 (488)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHHHHHHhcCccc
Confidence 468999999999999999999999998888654211 0011000 0000 00000
Q ss_pred ------Ccccc-----------cccChhhhhcCCeEEEeCceEEEeccccccEEEecCC--cEEecCEEEEccCCCCCCC
Q psy2951 94 ------KADSI-----------LLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTI 154 (1466)
Q Consensus 94 ------~~~~~-----------~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~--~~~~~d~lviAtG~~~~~~ 154 (1466)
+...+ ...+...+++.+++++.+..... +....++...++ .++.||+||||||++|..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g~~~~~--~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p 162 (488)
T 3dgz_A 85 AQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFV--DEHTVRGVDKGGKATLLSAEHIVIATGGRPRYP 162 (488)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCEEEES--SSSEEEEECTTSCEEEEEEEEEEECCCEEECCC
T ss_pred CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEc--cCCeEEEEeCCCceEEEECCEEEEcCCCCCCCC
Confidence 00011 11123345667999998886643 444455665566 4799999999999999865
Q ss_pred CCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHH
Q psy2951 155 SQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLF 234 (1466)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l 234 (1466)
+.+++.... ..+..+...+. ..+++++|||+|++|+|+|..+++.|.+|+++++.. +.+.+++++.+.+.+.+
T Consensus 163 ~~i~G~~~~--~~~~~~~~~~~---~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~--~l~~~d~~~~~~l~~~l 235 (488)
T 3dgz_A 163 TQVKGALEY--GITSDDIFWLK---ESPGKTLVVGASYVALECAGFLTGIGLDTTVMMRSI--PLRGFDQQMSSLVTEHM 235 (488)
T ss_dssp SSCBTHHHH--CBCHHHHTTCS---SCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC--SSTTSCHHHHHHHHHHH
T ss_pred CCCCCcccc--cCcHHHHHhhh---hcCCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCc--ccccCCHHHHHHHHHHH
Confidence 535554221 12445544433 245789999999999999999999999999999864 34578899999999999
Q ss_pred HhCCcEEEcCceEEEEEecCCCCeEEEEc---CCCc--EEeccEEEEeeccccCccc--cccCCceec-CCccEEECCCC
Q psy2951 235 ESKGVKFVMKANVSSFEKNEKNDVTAANL---DNGT--TIPADLVIVGIGTVLNTNY--LDGKGVELN-GQKAVVVNEYL 306 (1466)
Q Consensus 235 ~~~GV~i~~~~~v~~i~~~~~~~~~~v~~---~~g~--~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~-~~g~i~vd~~~ 306 (1466)
+++||++++++.+++++..+++.+. +.+ .+|+ ++++|.||+|+|++|++++ ++..+++++ ++|+|.||+++
T Consensus 236 ~~~gv~~~~~~~v~~i~~~~~~~~~-v~~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~~G~i~vd~~~ 314 (488)
T 3dgz_A 236 ESHGTQFLKGCVPSHIKKLPTNQLQ-VTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQE 314 (488)
T ss_dssp HHTTCEEEETEEEEEEEECTTSCEE-EEEEETTTTEEEEEEESEEEECSCEEESCGGGTGGGGTCCBCSSSCCBCCCTTS
T ss_pred HHCCCEEEeCCEEEEEEEcCCCcEE-EEEEeCCCCeeEEEECCEEEEcccCCcccCcCCccccCcEecCCCCeEeECCCC
Confidence 9999999999999999874433332 333 2354 5799999999999999997 577889998 78999999999
Q ss_pred CcCCCCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCCC---CCCCCCcccccccceeeEEEEeecCC-
Q psy2951 307 ETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT---SLSTIPFFWTMLFGVGFRFAGYAAGH- 382 (1466)
Q Consensus 307 ~t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~---~~~~~p~~~s~~~~~~~~~~G~~~~~- 382 (1466)
||+.|+|||+|||+... +..+..|..||+.+|.||++... .+..+|+.+.. ...+..+|.+...
T Consensus 315 ~t~~~~IyA~GD~~~~~----------~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~--~p~~a~vGlte~~a 382 (488)
T 3dgz_A 315 ATSVPHIYAIGDVAEGR----------PELTPTAIKAGKLLAQRLFGKSSTLMDYSNVPTTVFT--PLEYGCVGLSEEEA 382 (488)
T ss_dssp BCSSTTEEECGGGBTTC----------CCCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCEEECS--SSEEEEEECCHHHH
T ss_pred ccCCCCEEEeEEecCCC----------CcchhHHHHHHHHHHHHHcCCCCccCCCCCCCEEEEC--CCCeEEEeCCHHHH
Confidence 99999999999997421 23566899999999999998643 45666753222 2334556654321
Q ss_pred ------ceEEE-e----c-------ccCCCeEEEEEEc---CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----cc
Q psy2951 383 ------TQVDI-V----G-------DLEALKFTAYYSN---ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LP 434 (1466)
Q Consensus 383 ------~~~~~-~----g-------~~~~~~~~~~~~~---~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~ 434 (1466)
..+.. . . ..+..+|.+++.+ +++|+|++++|. +++++.++ .+|+++.+. ++
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~~ilG~~~~g~~a~e~i~~~~-~ai~~~~t~~~l~~~~ 461 (488)
T 3dgz_A 383 VALHGQEHVEVYHAYYKPLEFTVADRDASQCYIKMVCMREPPQLVLGLHFLGPNAGEVTQGFA-LGIKCGASYAQVMQTV 461 (488)
T ss_dssp HHHHCGGGEEEEEEECCCHHHHHTTCCCTTCEEEEEEESSTTCBEEEEEEEETTHHHHHHHHH-HHHHTTCBHHHHHTSC
T ss_pred HhhCCCCcEEEEEccccchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhccc
Confidence 11111 1 0 0125789999886 389999999998 56777776 999999886 89
Q ss_pred ccCcccchhh
Q psy2951 435 HSHRCLGVVL 444 (1466)
Q Consensus 435 ~~~p~~~e~~ 444 (1466)
|+|||++|.+
T Consensus 462 ~~hPt~~e~~ 471 (488)
T 3dgz_A 462 GIHPTCSEEV 471 (488)
T ss_dssp CCSSCSTHHH
T ss_pred cCCCChHHHH
Confidence 9999999998
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-34 Score=350.07 Aligned_cols=364 Identities=19% Similarity=0.264 Sum_probs=271.7
Q ss_pred CCcEEEECCchHHHHHHHHHHh-cCCCCcEEEEcC--------CCCCCCCCCC----Cchhh----------------cc
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQ-NGFTGKLYFITD--------ENFLPYDRVK----LSKQL----------------DI 1116 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~-~g~~~~i~li~~--------~~~~~~~~~~----l~~~~----------------~~ 1116 (1466)
+++|+|||||+||++||..|++ .|. +|+|||+ ...++..... -++.+ ..
T Consensus 3 ~~dvvVIGgG~aGl~aA~~la~~~G~--~V~liE~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~ 80 (490)
T 1fec_A 3 AYDLVVIGAGSGGLEAGWNAASLHKK--RVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGW 80 (490)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHHHCC--CEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTE
T ss_pred cccEEEECCCHHHHHHHHHHHHHcCC--EEEEEecccccccccCCCcCccccCCCcchhhHHHHHHHHHHHHHHHHhcCc
Confidence 4689999999999999999999 998 9999993 2222211000 00000 00
Q ss_pred ---------Ccccc-----------cccChhhhccC-CcEEEcCCeEEEeecCCCCeEEec-----CC---cEEecCeEE
Q psy2951 1117 ---------KADSI-----------LLRTEEFYKDN-DIHVIKGKKIISDSELNEKKIKLQ-----DG---TSIDFTKIY 1167 (1466)
Q Consensus 1117 ---------~~~~~-----------~~~~~~~~~~~-~v~~~~~~~v~~i~d~~~~~v~~~-----~g---~~~~yd~lv 1167 (1466)
+...+ .......+++. +|+++.++ +..+ ++ +++.+. +| ..+.||+||
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~-~~~i-~~--~~v~v~~~~~~~g~~~~~~~~d~lv 156 (490)
T 1fec_A 81 ELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGF-GALQ-DN--HTVLVRESADPNSAVLETLDTEYIL 156 (490)
T ss_dssp ECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESE-EEEE-ET--TEEEEESSSSTTSCEEEEEEEEEEE
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeE-EEEe-eC--CEEEEEeeccCCCCceEEEEcCEEE
Confidence 00000 00011234567 99999997 8888 75 466663 56 689999999
Q ss_pred EecCCCCCcCCCCCCCCcEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHHHhcC---CCeEEEEcCCCcCCccc
Q psy2951 1168 LATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASK---VKSVTVVGRGAVPFQES 1244 (1466)
Q Consensus 1168 lAtG~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~~---g~~v~vv~~~~~~~~~~ 1244 (1466)
||||++|+.|++| |.+.+ .+.+++..+. ..+++++|||+|++|+|+|..|++. |.+|+++++.+++++ .
T Consensus 157 iAtGs~p~~p~i~-g~~~~---~~~~~~~~~~---~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~-~ 228 (490)
T 1fec_A 157 LATGSWPQHLGIE-GDDLC---ITSNEAFYLD---EAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILR-G 228 (490)
T ss_dssp ECCCEEECCCCSB-TGGGC---BCHHHHTTCS---SCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSST-T
T ss_pred EeCCCCCCCCCCC-Cccce---ecHHHHhhhh---hcCCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCccc-c
Confidence 9999999999998 76542 3456654433 3478999999999999999999999 999999999998886 6
Q ss_pred ccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccCcc-c-cccCCceeeCCCe
Q psy2951 1245 LGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTN-Y-LDGKGVELNGQKA 1322 (1466)
Q Consensus 1245 ~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~~~-~-~~~~gl~~~~~G~ 1322 (1466)
+++++.+.+.+.++++||+++++++|++++ .+++....|.+.+|+++++|.||+|+|..|+++ + ++.+|+.++.+|+
T Consensus 229 ~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~-~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~ 307 (490)
T 1fec_A 229 FDSELRKQLTEQLRANGINVRTHENPAKVT-KNADGTRHVVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGA 307 (490)
T ss_dssp SCHHHHHHHHHHHHHTTEEEEETCCEEEEE-ECTTSCEEEEETTSCEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSC
T ss_pred cCHHHHHHHHHHHHhCCCEEEeCCEEEEEE-EcCCCEEEEEECCCcEEEcCEEEEccCCCcCccccCchhcCccCCCCCC
Confidence 889999999999999999999999999998 333333568889999999999999999999998 4 6888999998899
Q ss_pred EEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCCCC---CCCCCccceeccccccEEEE
Q psy2951 1323 VVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT---SLSTIPFFWTMLFGVGFRFA 1399 (1466)
Q Consensus 1323 i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~~---~~~~~p~~w~~~~~~~~~~~ 1399 (1466)
|.||+++||+.|+|||+|||+..+. .|+.|..||+.||.||+|... .|..+| |...++..+..+
T Consensus 308 I~Vd~~~~t~~~~IyA~GD~~~~~~-----------l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p--~~~~~~~~~a~v 374 (490)
T 1fec_A 308 IKVDAYSKTNVDNIYAIGDVTDRVM-----------LTPVAINEGAAFVDTVFANKPRATDHTKVA--CAVFSIPPMGVC 374 (490)
T ss_dssp BCCCTTCBCSSTTEEECGGGGCSCC-----------CHHHHHHHHHHHHHHHHSSCCCCCCCSSCC--EEECCSSCEEEE
T ss_pred EEECCCCccCCCCEEEEeccCCCcc-----------CHHHHHHHHHHHHHHhcCCCCCcCCCCCcc--EEEECCCCeEEE
Confidence 9999999999999999999986432 358999999999999998542 455666 444446888889
Q ss_pred eeCC-----CCceEEEc-C----------CcCCceEE-EEEEe--CCEEEEEEEecCcHH--HHHHHHHHHcCCCCChhc
Q psy2951 1400 GYAA-----GHTQVDIV-G----------DLEALKFT-AYYSN--ADKVLAILTVGMDPL--AAQFAERIKMQKYIQKDQ 1458 (1466)
Q Consensus 1400 g~~~-----~~~~~~~~-~----------~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 1458 (1466)
|+.+ ..+.+.+. . +.++..|+ +.+++ +++|+|+..+|.... +..+.-+|+.+ ++.++
T Consensus 375 G~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~--~t~~~ 452 (490)
T 1fec_A 375 GYVEEDAAKKYDQVAVYESSFTPLMHNISGSTYKKFMVRIVTNHADGEVLGVHMLGDSSPEIIQSVAICLKMG--AKISD 452 (490)
T ss_dssp ECCHHHHHHHCSEEEEEEEEECCHHHHHHSCTTCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTT--CBHHH
T ss_pred eCCHHHHHhcCCCEEEEEeecChhhhhhhcCCCeEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcC--CCHHH
Confidence 9753 12233221 0 11345688 88875 689999999998632 34455566666 34444
Q ss_pred c
Q psy2951 1459 I 1459 (1466)
Q Consensus 1459 ~ 1459 (1466)
|
T Consensus 453 l 453 (490)
T 1fec_A 453 F 453 (490)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=356.35 Aligned_cols=371 Identities=18% Similarity=0.211 Sum_probs=267.1
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCC--------------------Cccchhcc-------cCc
Q psy2951 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR--------------------VKLSKQLD-------IKA 95 (1466)
Q Consensus 43 ~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~~--------------------~~~~~~~~-------~~~ 95 (1466)
++||+||||||||++||..|++.|.++.|++.+. ....- ......+. .+.
T Consensus 8 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~---~GGtc~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 84 (492)
T 3ic9_A 8 NVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA---YGTTCARVGCMPSKLLIAAADASYHASQTDLFGIQVDRISVNG 84 (492)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTCSCEEEEESSC---SSCHHHHHSHHHHHHHHHHHHHHHHHTCGGGGTEECSEEEECH
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC---CCCcccccChhcCHHHHHHHHHHHHHhhhhhcCcCCCCCccCH
Confidence 4899999999999999999999999988876432 11000 00000000 111
Q ss_pred ccccccCh-----------hhhhc-CCeEEEeCceEEEeccccccEEEecCCcEEecCEEEEccCCCCCCCCCCCCC-Cc
Q psy2951 96 DSILLRTE-----------EFYKD-NDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGV-NK 162 (1466)
Q Consensus 96 ~~~~~~~~-----------~~~~~-~~v~~~~~~~v~~~~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~~~-~~ 162 (1466)
.++..+.. ..+.. .+++++.+...+.. .+++.+.++.++.||+||||||++|..++.++.. ..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~a~~~~----~~~v~~~~~~~~~~d~lViATGs~p~~p~~~~~~~~~ 160 (492)
T 3ic9_A 85 KAVMKRIQTERDRFVGFVVESVESFDEQDKIRGFAKFLD----EHTLQVDDHSQVIAKRIVIATGSRPNYPEFLAAAGSR 160 (492)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCGGGEEESCEEEEE----TTEEEETTTEEEEEEEEEECCCEECCCCHHHHTTGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCeeEEEEEEEEec----CCEEEEcCCcEEEeCEEEEccCCCCcCCCCCCccCCc
Confidence 11111111 11112 24566777765543 3678888888999999999999999865433322 22
Q ss_pred EEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEE
Q psy2951 163 VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFV 242 (1466)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~ 242 (1466)
++ +..+...+. ..+++++|||+|++|+|+|..|++.|.+|+++++.+.++ +.+++++.+.+.+.|++. |+++
T Consensus 161 v~---t~~~~~~~~---~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l-~~~d~~~~~~l~~~l~~~-V~i~ 232 (492)
T 3ic9_A 161 LL---TNDNLFELN---DLPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVA-NLQDEEMKRYAEKTFNEE-FYFD 232 (492)
T ss_dssp EE---CHHHHTTCS---SCCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCT-TCCCHHHHHHHHHHHHTT-SEEE
T ss_pred EE---cHHHHhhhh---hcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccc-ccCCHHHHHHHHHHHhhC-cEEE
Confidence 32 445544433 347899999999999999999999999999999998776 568899999999999988 9999
Q ss_pred cCceEEEEEecCCCCeEEEEc--CCC--cEEeccEEEEeeccccCccc--cccCCceecCCccEEEC-CCCCcCCCCEEE
Q psy2951 243 MKANVSSFEKNEKNDVTAANL--DNG--TTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVN-EYLETNVPGVYA 315 (1466)
Q Consensus 243 ~~~~v~~i~~~~~~~~~~v~~--~~g--~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd-~~~~t~~~~iya 315 (1466)
+++.+++++.+++ .+. +.+ .+| +++++|.||+|+|++|++++ ++..|++++++|+|.|| ++++|+.|+|||
T Consensus 233 ~~~~v~~i~~~~~-~v~-v~~~~~~G~~~~i~~D~Vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~~t~~~~IyA 310 (492)
T 3ic9_A 233 AKARVISTIEKED-AVE-VIYFDKSGQKTTESFQYVLAATGRKANVDKLGLENTSIELDKKNSPLFDELTLQTSVDHIFV 310 (492)
T ss_dssp TTCEEEEEEECSS-SEE-EEEECTTCCEEEEEESEEEECSCCEESCSSSCGGGSCCCBCTTCCBCCCTTTCBCSSTTEEE
T ss_pred ECCEEEEEEEcCC-EEE-EEEEeCCCceEEEECCEEEEeeCCccCCCCCChhhcCCEECCCCCEeECcccccCCCCCEEE
Confidence 9999999987543 333 444 366 68999999999999999998 78889999999999999 999999999999
Q ss_pred ecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCC----CCCCCCCcccccccceeeEEEEeecCC---------
Q psy2951 316 GGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK----TSLSTIPFFWTMLFGVGFRFAGYAAGH--------- 382 (1466)
Q Consensus 316 ~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~----~~~~~~p~~~s~~~~~~~~~~G~~~~~--------- 382 (1466)
+|||+..+ ..+..|..||+.+|.|+++.. ..+..+|+ .......+..+|.+...
T Consensus 311 ~GD~~~~~-----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~--~~~~~p~~a~vGlte~~a~~~~g~~~ 377 (492)
T 3ic9_A 311 AGDANNTL-----------TLLHEAADDGKVAGTNAGAYPVIAQGQRRAPLS--VVFTEPQVASVGLSLRQIEDLYADQD 377 (492)
T ss_dssp CGGGGTSS-----------CSHHHHHHHHHHHHHHHHHTTSCCEECCCCCEE--EECSSSEEEEEESCHHHHHHHCSCSS
T ss_pred EEecCCCC-----------ccHHHHHHHHHHHHHHHcCCCCCcccCCCCCcE--EEECCCCeEEecCCHHHHHhccCccC
Confidence 99998754 346689999999999999732 12344442 11122334455544311
Q ss_pred -ceEEE-----ec------ccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccc
Q psy2951 383 -TQVDI-----VG------DLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLG 441 (1466)
Q Consensus 383 -~~~~~-----~g------~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~ 441 (1466)
..+.. .. .-+..+|.+++.+ +++|+|++++|. +.+++.++ .+|+++.+. ++++|||++
T Consensus 378 g~~~~~~~~~~~~~~~a~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~-~ai~~~~t~~~l~~~~~~hPt~~ 456 (492)
T 3ic9_A 378 AANYVVGQVSFEGQGRSRVMGKNKGLLNVYADRTSGEFLGAEMFGPAAEHIGHLLA-WARQQQMTVQAMLTMPFYHPVIE 456 (492)
T ss_dssp SCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHH-HHHHTTCBHHHHTTSCCCTTCTH
T ss_pred CccEEEEEEEeccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhhCCCCCCChH
Confidence 11111 00 0135689998886 489999999998 45666666 999999876 799999999
Q ss_pred hhh
Q psy2951 442 VVL 444 (1466)
Q Consensus 442 e~~ 444 (1466)
|.+
T Consensus 457 e~~ 459 (492)
T 3ic9_A 457 EGL 459 (492)
T ss_dssp HHH
T ss_pred HHH
Confidence 998
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-34 Score=351.06 Aligned_cols=347 Identities=19% Similarity=0.250 Sum_probs=261.2
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCc--------------------cchhcc-------cC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK--------------------LSKQLD-------IK 646 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~--------------------~~~~~~-------~~ 646 (1466)
..+||+||||||||++||+.|+++|++ |+++|++. +++.... ....++ .+
T Consensus 19 ~~~dVvIIGgG~aGl~aA~~la~~G~~--V~liE~~~-~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 95 (478)
T 3dk9_A 19 ASYDYLVIGGGSGGLASARRAAELGAR--AAVVESHK-LGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFN 95 (478)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHTTCC--EEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSCCCCCCCC
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCe--EEEEecCC-CCCcccccCccchHHHHHHHHHHHHHHHHHhcCccCCCCccC
Confidence 458999999999999999999999988 77888663 2211000 000000 01
Q ss_pred cc-----------cccccCHhHhhhCCcEEEEceEEEEeccccccEEEccCCCEEecCEEEEcCCCCCCcC---CCCCCC
Q psy2951 647 AD-----------SILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTI---SQADGV 712 (1466)
Q Consensus 647 ~~-----------~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~---~~~~g~ 712 (1466)
.. .+.......++..+++++.++ +..+ +...+.+. .++.++.||+||||||++|+.| +++ |.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~~-~~~~~~v~-~~g~~~~~d~lviAtG~~p~~p~~~~i~-G~ 171 (478)
T 3dk9_A 96 WRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGH-AAFT-SDPKPTIE-VSGKKYTAPHILIATGGMPSTPHESQIP-GA 171 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESC-EEEC-SCSSCEEE-ETTEEEECSCEEECCCEEECCCCTTTST-TG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEe-eCCeEEEE-ECCEEEEeeEEEEccCCCCCCCCcCCCC-CC
Confidence 11 111222344567799999998 6666 66666776 4677899999999999999999 888 87
Q ss_pred CcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcE
Q psy2951 713 NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVK 792 (1466)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~ 792 (1466)
+. ..+.++...+. ..+++++|||+|++|+|+|..|++.|.+|+++++.++++ +.+++++.+.+.+.|+++||+
T Consensus 172 ~~---~~~~~~~~~~~---~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-~~~d~~~~~~~~~~l~~~gv~ 244 (478)
T 3dk9_A 172 SL---GITSDGFFQLE---ELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVE 244 (478)
T ss_dssp GG---SBCHHHHTTCC---SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC-TTSCHHHHHHHHHHHHHTTCE
T ss_pred ce---eEchHHhhchh---hcCccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccc-cccCHHHHHHHHHHHHHCCCE
Confidence 62 23444443332 348999999999999999999999999999999998877 678999999999999999999
Q ss_pred EEccceEEEEEecCCCceEEEECCC-------CcEEecCEEEEccccccCcc-c-cccCCceeeCCCcEEeCCCCCCCCC
Q psy2951 793 FVMKANVSSFEKNEKNDVTAANLDN-------GTTIPADLVIVGIGTVLNTN-Y-LDGKGVELNGQKAVVVNEYLETNVP 863 (1466)
Q Consensus 793 ~~~~~~v~~i~~~~~~~~~~v~~~~-------g~~i~~D~vi~a~G~~p~~~-~-~~~~gl~~~~~G~i~vd~~~~t~~~ 863 (1466)
+++++.+++++..+++....+.+.+ |+++++|.||+|+|++|+++ + ++.+|++++++|+|.||++++|+.|
T Consensus 245 i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~ 324 (478)
T 3dk9_A 245 VLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVK 324 (478)
T ss_dssp EETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTCCBCCCTTCBCSST
T ss_pred EEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCCCCCCchhcCCeeCCCCCEeeCCCcccCCC
Confidence 9999999999854444233566654 25799999999999999987 4 6888999999999999999999999
Q ss_pred CeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCC----CcCcccCeeeeeecCceeEEeeccCCC-----
Q psy2951 864 GVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK----TSLSTIPFFWTMLFGVGFRFAGYAAGH----- 934 (1466)
Q Consensus 864 ~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~~~----- 934 (1466)
+|||+|||+..+. .++.|..||+.+|.+|++.. ..+..+|+ ..++...+..+|+++..
T Consensus 325 ~IyA~GD~~~~~~-----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~--~~~~~p~~a~vGlte~~a~~~~ 391 (478)
T 3dk9_A 325 GIYAVGDVCGKAL-----------LTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPT--VVFSHPPIGTVGLTEDEAIHKY 391 (478)
T ss_dssp TEEECGGGGCSSC-----------CHHHHHHHHHHHHHHHHSCCTTCCCCCTTCCE--EECCSSCEEEEECCHHHHHHHH
T ss_pred CEEEEEecCCCCc-----------cHhHHHHHHHHHHHHHcCCCCcccCCCCCCCe--EEECCCceEEeeCCHHHHHhhC
Confidence 9999999996554 34789999999999999862 23556663 23455668888877521
Q ss_pred --CceeEe-----c------ccccceEEEEEe--cCCeEEEEEeecCc
Q psy2951 935 --TQVDIV-----G------DLEALKFTAYYS--NADKVLAILTVGMD 967 (1466)
Q Consensus 935 --~~~~~~-----~------~~~~~~~~~~~~--~~~~i~g~~~~g~~ 967 (1466)
.+.... . .-++..|+|+++ ++++++|++++|..
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~ 439 (478)
T 3dk9_A 392 GIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQGLG 439 (478)
T ss_dssp CGGGEEEEEEEECCGGGGGCSSCCCEEEEEEEETTTTEEEEEEEESTT
T ss_pred CCccEEEEEeecCcchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCC
Confidence 111100 0 113467899987 57999999999976
|
| >4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-35 Score=358.93 Aligned_cols=295 Identities=18% Similarity=0.305 Sum_probs=239.7
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhc--cCcccccccChh--hhccCCcEEEcC
Q psy2951 1064 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD--IKADSILLRTEE--FYKDNDIHVIKG 1139 (1466)
Q Consensus 1064 ~~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~--~~~~~~v~~~~~ 1139 (1466)
.++++|||||||+||+++|..|++.++ +|||||+++++.|. |.|..... .+...+..+... ...+.+++++.+
T Consensus 40 ~~KprVVIIGgG~AGl~~A~~L~~~~~--~VtLId~~~~~~~~-PlL~~va~G~l~~~~i~~p~~~~~~~~~~~v~~~~~ 116 (502)
T 4g6h_A 40 SDKPNVLILGSGWGAISFLKHIDTKKY--NVSIISPRSYFLFT-PLLPSAPVGTVDEKSIIEPIVNFALKKKGNVTYYEA 116 (502)
T ss_dssp CSSCEEEEECSSHHHHHHHHHSCTTTC--EEEEEESSSEEECG-GGGGGTTTTSSCGGGGEEEHHHHHTTCSSCEEEEEE
T ss_pred CCCCCEEEECCcHHHHHHHHHhhhCCC--cEEEECCCCCcccc-cchhHHhhccccHHHhhhhHHHHHHhhcCCeEEEEE
Confidence 346799999999999999999999888 99999999987663 44443322 222332222222 224458999887
Q ss_pred CeEEEeecCCCCeEEec--------------------CCcEEecCeEEEecCCCCCcCCCCCCCC-cEEEecCHHHHHhh
Q psy2951 1140 KKIISDSELNEKKIKLQ--------------------DGTSIDFTKIYLATGSSPRTISQADGVN-KVFYLRTVEDANNI 1198 (1466)
Q Consensus 1140 ~~v~~i~d~~~~~v~~~--------------------~g~~~~yd~lvlAtG~~~~~~~~~~g~~-~v~~~~~~~~~~~l 1198 (1466)
. |+.| |+++++|++. ++.+++||+||||||++|+.+++| |++ +.+.+++++|+.++
T Consensus 117 ~-v~~I-D~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~~~ip-G~~e~a~~l~t~~dA~~i 193 (502)
T 4g6h_A 117 E-ATSI-NPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTFGIP-GVTDYGHFLKEIPNSLEI 193 (502)
T ss_dssp E-EEEE-EGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECCTTCT-THHHHCEECSSHHHHHHH
T ss_pred E-EEEE-EhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCcccccCCcc-CcccccCCCCCHHHHHHH
Confidence 6 9999 9999999864 366899999999999999999999 877 77889999999888
Q ss_pred hcccC-----------------CCCeEEEEcCCHHHHHHHHHHhcC--------------CCeEEEEcCCCcCCcccccH
Q psy2951 1199 APHIT-----------------PESNVVVIGSSFIGMEAAAFCASK--------------VKSVTVVGRGAVPFQESLGK 1247 (1466)
Q Consensus 1199 ~~~~~-----------------~~~~vvVvG~g~~g~e~a~~l~~~--------------g~~v~vv~~~~~~~~~~~~~ 1247 (1466)
++.+. ...+++|||+|++|+|+|..|++. ..+|+++++.++.++ .+++
T Consensus 194 r~~l~~~~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il~-~~~~ 272 (502)
T 4g6h_A 194 RRTFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLN-MFEK 272 (502)
T ss_dssp HHHHHHHHHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSST-TSCH
T ss_pred HHHHHHHHHHHhcccccchhhccccceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEecccccccc-CCCH
Confidence 76531 124799999999999999988754 368999999999886 6899
Q ss_pred HHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCC----eeecCEEEEeeccccCc---cccccCCceeeCC
Q psy2951 1248 EVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGT----TIPADLVIVGIGTVLNT---NYLDGKGVELNGQ 1320 (1466)
Q Consensus 1248 ~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~----~i~~D~vv~a~G~~p~~---~~~~~~gl~~~~~ 1320 (1466)
++++.+.+.|+++||+++++++|++++ +++....+.+.||+ ++++|+||+|+|..|+. ++....++..+.+
T Consensus 273 ~~~~~~~~~L~~~GV~v~~~~~v~~v~--~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~~~~~~l~~~~~~~~~~~ 350 (502)
T 4g6h_A 273 KLSSYAQSHLENTSIKVHLRTAVAKVE--EKQLLAKTKHEDGKITEETIPYGTLIWATGNKARPVITDLFKKIPEQNSSK 350 (502)
T ss_dssp HHHHHHHHHHHHTTCEEETTEEEEEEC--SSEEEEEEECTTSCEEEEEEECSEEEECCCEECCHHHHHHHHHSGGGTTCC
T ss_pred HHHHHHHHHHHhcceeeecCceEEEEe--CCceEEEEEecCcccceeeeccCEEEEccCCcCCHHHHhHHHhccccccCC
Confidence 999999999999999999999999997 44455566777874 69999999999999983 3555566777778
Q ss_pred CeEEeCCCccc-cCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcC
Q psy2951 1321 KAVVVNEYLET-NVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVE 1376 (1466)
Q Consensus 1321 G~i~vd~~~~t-~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g 1376 (1466)
|+|.||++||+ ++|||||+||||..|.+. ..+.|.+||+.+|+||.+
T Consensus 351 g~I~Vd~~lq~~~~~~IfAiGD~a~~~~p~---------~a~~A~qqg~~~A~ni~~ 398 (502)
T 4g6h_A 351 RGLAVNDFLQVKGSNNIFAIGDNAFAGLPP---------TAQVAHQEAEYLAKNFDK 398 (502)
T ss_dssp SSEEBCTTSBBTTCSSEEECGGGEESSSCC---------CHHHHHHHHHHHHHHHHH
T ss_pred CceeECCccccCCCCCEEEEEcccCCCCCC---------chHHHHHHHHHHHHHHHH
Confidence 89999999999 599999999999887654 248899999999999964
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-34 Score=351.66 Aligned_cols=372 Identities=18% Similarity=0.240 Sum_probs=260.9
Q ss_pred CcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCC---CCC-Cchhh----------------cc------Cc--
Q psy2951 1067 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD---RVK-LSKQL----------------DI------KA-- 1118 (1466)
Q Consensus 1067 ~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~---~~~-l~~~~----------------~~------~~-- 1118 (1466)
++|+|||||+||++||..|++.|. +|+|||+++ .+.. +.. .++.+ .. ..
T Consensus 3 ~dVvIIGgG~aGl~aA~~l~~~g~--~V~liE~~~-~GG~c~~~gc~P~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 79 (500)
T 1onf_A 3 YDLIVIGGGSGGMAAARRAARHNA--KVALVEKSR-LGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPL 79 (500)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTC--CEEEEESSS-TTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHHH
T ss_pred cCEEEECCCHHHHHHHHHHHHCCC--cEEEEeCCC-cCccccccCCcchHHHHHHHHHHHHHHhhHhcCCccCCccCHHH
Confidence 689999999999999999999988 999999985 2100 000 00000 00 00
Q ss_pred ---------ccccccChhhhccCCcEEEcCCeEEEeecCCCCeEEecC-------------CcEEecCeEEEecCCCCCc
Q psy2951 1119 ---------DSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQD-------------GTSIDFTKIYLATGSSPRT 1176 (1466)
Q Consensus 1119 ---------~~~~~~~~~~~~~~~v~~~~~~~v~~i~d~~~~~v~~~~-------------g~~~~yd~lvlAtG~~~~~ 1176 (1466)
..+.....+++++.+++++.++ +..+ |+ ++|.+.+ +.++.||+||+|||++|+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~i-d~--~~v~v~~~~~~~~~~~~~~~~~~~~~d~lViAtGs~p~~ 155 (500)
T 1onf_A 80 LVERRDKYIQRLNNIYRQNLSKDKVDLYEGT-ASFL-SE--NRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVF 155 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCEEEESC-CCCC-----------------------------CBSSEEECCCCCBCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEe-eC--CEEEEEeccccccccccCCCceEEEeCEEEECCCCCCCC
Confidence 0000011234456799999887 5566 64 4565544 6689999999999999999
Q ss_pred CCCCCCCCcEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHH
Q psy2951 1177 ISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKL 1256 (1466)
Q Consensus 1177 ~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~ 1256 (1466)
|++| |.+.++ +.+++.++. . +++++|||+|++|+|+|..|++.|.+|+++++.+++++ .+++++.+.+.+.
T Consensus 156 p~i~-G~~~~~---~~~~~~~~~---~-~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~-~~d~~~~~~l~~~ 226 (500)
T 1onf_A 156 PPVK-GIENTI---SSDEFFNIK---E-SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR-KFDESVINVLEND 226 (500)
T ss_dssp CSCT-TGGGCE---EHHHHTTCC---C-CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCT-TSCHHHHHHHHHH
T ss_pred CCCC-CCCccc---CHHHHhccC---C-CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCc-ccchhhHHHHHHH
Confidence 9898 875433 345554432 2 78999999999999999999999999999999998885 6889999999999
Q ss_pred HHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCe-eecCEEEEeeccccCcc-c-cccCCceeeCCCeEEeCCCccccC
Q psy2951 1257 FESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTT-IPADLVIVGIGTVLNTN-Y-LDGKGVELNGQKAVVVNEYLETNV 1333 (1466)
Q Consensus 1257 ~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~-i~~D~vv~a~G~~p~~~-~-~~~~gl~~~~~G~i~vd~~~~t~~ 1333 (1466)
++++||+++++++|++++ .+++....|.+.+|++ +++|.||+|+|..|+++ + ++.+|+.+ .+|+|.||+++||+.
T Consensus 227 l~~~gv~i~~~~~v~~i~-~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~-~~G~i~vd~~~~t~~ 304 (500)
T 1onf_A 227 MKKNNINIVTFADVVEIK-KVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNVET-NNNYIVVDENQRTSV 304 (500)
T ss_dssp HHHTTCEEECSCCEEEEE-ESSTTCEEEEETTSCEEEEESEEEECCCBCCTTTTSSCTTTTCCB-SSSCEEECTTCBCSS
T ss_pred HHhCCCEEEECCEEEEEE-EcCCceEEEEECCCcEEEECCEEEECCCCCcCCCCCCchhcCccc-cCCEEEECCCcccCC
Confidence 999999999999999998 3322334688889988 99999999999999997 5 68889998 688999999999999
Q ss_pred CCEEEecccccCCCcc-----------------------CCCceeeeecHHHHHHHHHHHHHHhcCCCC---CCCCCccc
Q psy2951 1334 PGVYAGGDIAYAPLHS-----------------------FYNKNASIGHYQLAQYHGRIAALNMVEKKT---SLSTIPFF 1387 (1466)
Q Consensus 1334 ~~v~a~GD~a~~p~~~-----------------------~~~~~~~~~~~~~A~~qa~~aa~~i~g~~~---~~~~~p~~ 1387 (1466)
|+|||+|||+..+... ..+...+...|+.|..||+.||+||+|... .|..+|+.
T Consensus 305 ~~iya~GD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~ 384 (500)
T 1onf_A 305 NNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQLTPVAINAGRLLADRLFLKKTRKTNYKLIPTV 384 (500)
T ss_dssp SSEEECSTTEEEC------------------------------CBCCCCHHHHHHHHHHHHHHHHSCTTCCCCCSSCCEE
T ss_pred CCEEEEeccccccccccccccccccccccccccccccccccccCCcccchhHHHHHHHHHHHHHhCCCCccCCCCCCCeE
Confidence 9999999999543110 000012457899999999999999998542 35667743
Q ss_pred eeccccccEEEEeeCC-----CC--ceEEEc---------------CCcCCceEEEEEE--eCCEEEEEEEecCcHH--H
Q psy2951 1388 WTMLFGVGFRFAGYAA-----GH--TQVDIV---------------GDLEALKFTAYYS--NADKVLAILTVGMDPL--A 1441 (1466)
Q Consensus 1388 w~~~~~~~~~~~g~~~-----~~--~~~~~~---------------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~ 1441 (1466)
..++..+..+|..+ .. .++.+. ...++..|++..+ ++++|+|+..+|.... +
T Consensus 385 --~~~~~~~a~vGl~e~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~~~i 462 (500)
T 1onf_A 385 --IFSHPPIGTIGLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYLKLVCVGKDELIKGLHIIGLNADEIV 462 (500)
T ss_dssp --ECCSSCEEEEECCHHHHHHHTCGGGEEEEEEEECCGGGTTSCSCGGGSCCEEEEEEEETTTTEEEEEEEESTTHHHHH
T ss_pred --EEcCcceEEEeCCHHHHHhcCCCccEEEEEEECchhhhhhccccccCCCceEEEEEEECCCCEEEEEEEECCCHHHHH
Confidence 33456788888752 11 223221 1113456887777 4689999999998522 3
Q ss_pred HHHHHHHHcCCCCChhccc
Q psy2951 1442 AQFAERIKMQKYIQKDQIE 1460 (1466)
Q Consensus 1442 ~~~~~~~~~~~~~~~~~~~ 1460 (1466)
..+.-+|+.+ .+.++|+
T Consensus 463 ~~~~~ai~~~--~t~~~l~ 479 (500)
T 1onf_A 463 QGFAVALKMN--ATKKDFD 479 (500)
T ss_dssp HHHHHHHHTT--CBHHHHH
T ss_pred HHHHHHHHcC--CCHHHHh
Confidence 3333345555 4445553
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-34 Score=351.05 Aligned_cols=373 Identities=23% Similarity=0.295 Sum_probs=269.0
Q ss_pred CcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCC----Cccchh-----------------c-----ccCccc
Q psy2951 44 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR----VKLSKQ-----------------L-----DIKADS 97 (1466)
Q Consensus 44 ~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~~----~~~~~~-----------------~-----~~~~~~ 97 (1466)
+||+||||||||++||..|++.|.++.|++.++ ...... +..++. + ..+..+
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~--~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 79 (455)
T 2yqu_A 2 YDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEK--ALGGTCLRVGCIPSKALLETTERIYEAKKGLLGAKVKGVELDLPA 79 (455)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS--SSSHHHHHHSHHHHHHHHHHHHHHHHHHHCCTTEEECCEEECHHH
T ss_pred CCEEEECCChhHHHHHHHHHHCCCeEEEEeCCC--CCCCccceecchhHHHHHHHHHHHHHHhhhcCCcccCCCccCHHH
Confidence 699999999999999999999999887765432 211000 000000 0 001111
Q ss_pred c-----------cccChhhhhcCCeEEEeCceEEEeccccccEEEec-CCcEEecCEEEEccCCCCCCCCCCCCCCcEEE
Q psy2951 98 I-----------LLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQ-DGTSIDFTKIYLATGSSPRTISQADGVNKVFY 165 (1466)
Q Consensus 98 ~-----------~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~-~~~~~~~d~lviAtG~~~~~~~~~~~~~~~~~ 165 (1466)
+ ...+..++++.+++++.++.+.. +. .++.+. ++.++.||+||+|||++|..++.. +.+...
T Consensus 80 ~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i--~~--~~~~v~~~g~~~~~d~lviAtG~~p~~~~~~-g~~~~~- 153 (455)
T 2yqu_A 80 LMAHKDKVVQANTQGVEFLFKKNGIARHQGTARFL--SE--RKVLVEETGEELEARYILIATGSAPLIPPWA-QVDYER- 153 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEES--SS--SEEEETTTCCEEEEEEEEECCCEEECCCTTB-CCCSSS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEe--cC--CeEEEeeCCEEEEecEEEECCCCCCCCCCCC-CCCcCc-
Confidence 1 11123456677999999987642 33 334443 567899999999999998866533 332201
Q ss_pred ecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEEcCc
Q psy2951 166 LRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKA 245 (1466)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~ 245 (1466)
+.+..+...+. ..+++++|||+|++|+|+|..|++.|.+|+++++.+.++ +.+++++.+.+.+.+++.||++++++
T Consensus 154 v~~~~~~~~~~---~~~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l-~~~~~~~~~~l~~~l~~~Gv~i~~~~ 229 (455)
T 2yqu_A 154 VVTSTEALSFP---EVPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRIL-PTMDLEVSRAAERVFKKQGLTIRTGV 229 (455)
T ss_dssp EECHHHHTCCS---SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC-TTSCHHHHHHHHHHHHHHTCEEECSC
T ss_pred EechHHhhccc---cCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccc-cccCHHHHHHHHHHHHHCCCEEEECC
Confidence 12445554433 235899999999999999999999999999999988766 46789999999999999999999999
Q ss_pred eEEEEEecCCCCeEEEEcCCCcEEeccEEEEeeccccCccc--cccCCceecCCccEEECCCCCcCCCCEEEeccccccc
Q psy2951 246 NVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 323 (1466)
Q Consensus 246 ~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~ 323 (1466)
+|++++.+++ ...+.+++++++++|.||+|+|++|++++ ++..|++++++|+|.||++++|+.|+|||+|||+..+
T Consensus 230 ~V~~i~~~~~--~v~v~~~~g~~i~~D~vv~A~G~~p~~~~l~~~~~g~~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~ 307 (455)
T 2yqu_A 230 RVTAVVPEAK--GARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPVDEHLRTRVPHIYAIGDVVRGP 307 (455)
T ss_dssp CEEEEEEETT--EEEEEETTSCEEEESEEEECSCEEECCTTCCGGGGTCCCCTTSCCCCCTTSBCSSTTEEECGGGSSSC
T ss_pred EEEEEEEeCC--EEEEEECCCeEEEcCEEEECcCCCcCCCCCChhhcCCccCCCCcEeECCCcccCCCCEEEEecCCCCc
Confidence 9999987542 23456677889999999999999999987 6778888888899999999999999999999998754
Q ss_pred CccCCCCcceeccHHHHHHHHHHHHHHhcCCCCCC--CCCCcccccccceeeEEEEeecCC-----ceEEEec-------
Q psy2951 324 LHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSL--STIPFFWTMLFGVGFRFAGYAAGH-----TQVDIVG------- 389 (1466)
Q Consensus 324 ~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~--~~~p~~~s~~~~~~~~~~G~~~~~-----~~~~~~g------- 389 (1466)
..+..|..||+.+|.||++....+ ..+|+ ....+..+..+|..... .++....
T Consensus 308 -----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~--~~~~~~~~a~~G~~~~~a~~~g~~~~~~~~~~~~~~ 374 (455)
T 2yqu_A 308 -----------MLAHKASEEGIAAVEHMVRGFGHVDYQAIPS--VVYTHPEIAAVGYTEEELKAQGIPYKVGKFPYSASG 374 (455)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHHSCCCCCGGGCCE--EECSSSEEEEEECCHHHHHHHTCCEEEEEEEGGGCH
T ss_pred -----------cCHHHHHHhHHHHHHHHcCCCccCCCCCCCE--EEEcCCceEEEECCHHHHHHcCCCEEEEEEEcccch
Confidence 346689999999999999864433 33442 22223345555543211 1111110
Q ss_pred ----ccCCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 390 ----DLEALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 390 ----~~~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
.-+..+|.+++.+ +++|+|++++|. ++++..++ .+|+.+.+. ++++|||++|.+
T Consensus 375 ~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~-~ai~~~~~~~~~~~~~~~~Pt~~e~~ 441 (455)
T 2yqu_A 375 RARAMGETEGFIKVLAHAKTDRILGVHGIGARVGDVLAEAA-LALFFKASAEDLGRAPHAHPSLSEIL 441 (455)
T ss_dssp HHHHHTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHH-HHHHTTCBHHHHHHSCCCSSCTHHHH
T ss_pred HHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHH-HHHHCCCCHHHHhhcccCCCCHHHHH
Confidence 1135678888886 689999999997 35666666 899998876 799999999988
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-34 Score=346.96 Aligned_cols=361 Identities=21% Similarity=0.280 Sum_probs=267.8
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCC----CCchhh----------------cc-------Cc
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV----KLSKQL----------------DI-------KA 1118 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~----~l~~~~----------------~~-------~~ 1118 (1466)
+++|+|||||+||+++|..|++.|. +|+|||+++ ++.... ..++.+ .. ..
T Consensus 4 ~~dVvIIGgG~aGl~aA~~l~~~g~--~V~liE~~~-~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 80 (463)
T 2r9z_A 4 HFDLIAIGGGSGGLAVAEKAAAFGK--RVALIESKA-LGGTCVNVGCVPKKVMWYASHLAEAVRDAPGFGVQASGGTLDW 80 (463)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTC--CEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTBCCC---CCH
T ss_pred cCcEEEECCCHHHHHHHHHHHhCCC--cEEEEcCCC-CCCcCcCcCchhHHHHHHHHHHHHHHhhhhhcCcccCCCCcCH
Confidence 4689999999999999999999988 999999973 221000 000000 00 00
Q ss_pred c-----------cccccChhhhccCCcEEEcCCeEEEeecCCCCeEEecCCcEEecCeEEEecCCCCCcCCCCCCCCcEE
Q psy2951 1119 D-----------SILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVF 1187 (1466)
Q Consensus 1119 ~-----------~~~~~~~~~~~~~~v~~~~~~~v~~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~~v~ 1187 (1466)
. .+.......+.+.+++++.++ +..+ +. ++|.+ ++.++.||+||+|||++|+.|++| |.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~i-~~--~~v~~-~g~~~~~d~lviAtGs~p~~p~i~-G~~~-- 152 (463)
T 2r9z_A 81 PRLVAGRDRYIGAINSFWDGYVERLGITRVDGH-ARFV-DA--HTIEV-EGQRLSADHIVIATGGRPIVPRLP-GAEL-- 152 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESC-EEEE-ET--TEEEE-TTEEEEEEEEEECCCEEECCCSCT-TGGG--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeE-EEEc-cC--CEEEE-CCEEEEcCEEEECCCCCCCCCCCC-Cccc--
Confidence 0 000001123456799999987 7778 64 57887 777899999999999999999898 7643
Q ss_pred EecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcC
Q psy2951 1188 YLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMK 1267 (1466)
Q Consensus 1188 ~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~ 1267 (1466)
..+.+++..+. ..+++++|||+|++|+|+|..|++.|.+|+++++.+.++. .+++++.+.+.+.++++||+++++
T Consensus 153 -~~~~~~~~~~~---~~~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~gv~i~~~ 227 (463)
T 2r9z_A 153 -GITSDGFFALQ---QQPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLF-QFDPLLSATLAENMHAQGIETHLE 227 (463)
T ss_dssp -SBCHHHHHHCS---SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHTTCEEESS
T ss_pred -eecHHHHhhhh---ccCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCcccc-ccCHHHHHHHHHHHHHCCCEEEeC
Confidence 23556665543 3478999999999999999999999999999999988875 578999999999999999999999
Q ss_pred ceEEEEEecCCCcEEEEEcCCCC-eeecCEEEEeeccccCccc--cccCCceeeCCCeEEeCCCccccCCCEEEeccccc
Q psy2951 1268 ANVSSFEKNEKNDVTAANLDNGT-TIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAY 1344 (1466)
Q Consensus 1268 ~~v~~i~~~~~g~~~~v~l~~g~-~i~~D~vv~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~ 1344 (1466)
++|++++ .+++. ..|.+.+|+ ++++|.||+|+|..|++++ ++.+|+.++.+|+|.||++++|+.|+|||+|||+.
T Consensus 228 ~~v~~i~-~~~~~-~~v~~~~G~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~~ 305 (463)
T 2r9z_A 228 FAVAALE-RDAQG-TTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAYQNTNVPGVYALGDITG 305 (463)
T ss_dssp CCEEEEE-EETTE-EEEEETTCCEEEEESEEEECSCEEESCTTSCHHHHTCCCCTTSCCCCCTTSBCSSTTEEECGGGGT
T ss_pred CEEEEEE-EeCCe-EEEEEeCCcEEEEcCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECCCCccCCCCEEEEeecCC
Confidence 9999998 33222 568889998 8999999999999999984 56789999888999999999999999999999986
Q ss_pred CCCccCCCceeeeecHHHHHHHHHHHHHHhcCCC----CCCCCCccceeccccccEEEEeeCC-----C-CceEEEc---
Q psy2951 1345 APLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK----TSLSTIPFFWTMLFGVGFRFAGYAA-----G-HTQVDIV--- 1411 (1466)
Q Consensus 1345 ~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~----~~~~~~p~~w~~~~~~~~~~~g~~~-----~-~~~~~~~--- 1411 (1466)
.+. .|+.|..||+.||.||+|.. ..|..+|++. ..+..+-.+|..+ . ..++.+.
T Consensus 306 ~~~-----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~~--~~~~~~a~vGl~e~~a~~~~g~~~~~~~~~ 372 (463)
T 2r9z_A 306 RDQ-----------LTPVAIAAGRRLAERLFDGQSERKLDYDNIPTVV--FAHPPLSKVGLSEPEARERLGDVLTVYETS 372 (463)
T ss_dssp SCC-----------CHHHHHHHHHHHHHHHHSCCTTCCCCCSSCCEEE--CCSSCEEEEECCHHHHHHHHCSCEEEEEEE
T ss_pred Ccc-----------cHHHHHHHHHHHHHHHcCCCCcccCCCCCCCEEE--eCCCCeEEEcCCHHHHHhcCCCCEEEEEEE
Confidence 543 34889999999999999854 2456777542 2345677777642 0 1222221
Q ss_pred --------CCcCCceEEEEEEe--CCEEEEEEEecCcH--HHHHHHHHHHcCCCCChhcc
Q psy2951 1412 --------GDLEALKFTAYYSN--ADKVLAILTVGMDP--LAAQFAERIKMQKYIQKDQI 1459 (1466)
Q Consensus 1412 --------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 1459 (1466)
-+.++..|++.+++ +++|+|+..+|... .+..+.-+|+.+ ++.++|
T Consensus 373 ~~~~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~--~t~~~l 430 (463)
T 2r9z_A 373 FTPMRYALNEHGPKTAMKLVCAGPEQRVVGVHVIGDGADEMLQGFAVAVKMG--ATKADF 430 (463)
T ss_dssp ECCGGGTTSSSCCCEEEEEEEETTTTEEEEEEEESTTGGGTSHHHHHHHHTT--CBHHHH
T ss_pred cccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC--CCHHHH
Confidence 01134568877775 78999999999842 233444455555 344444
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=345.99 Aligned_cols=367 Identities=16% Similarity=0.236 Sum_probs=276.4
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCC----Cchhhc------------------cCcc----
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK----LSKQLD------------------IKAD---- 1119 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~----l~~~~~------------------~~~~---- 1119 (1466)
.++|+|||||+||++||..|++.|. +|+|||+++.++..... .++.+. ....
T Consensus 4 ~~DVvVIGgG~aGl~aA~~l~~~G~--~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (466)
T 3l8k_A 4 KYDVVVIGAGGAGYHGAFRLAKAKY--NVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFSTVQD 81 (466)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTC--CEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHHHHH
T ss_pred cceEEEECCCHHHHHHHHHHHhCCC--eEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHHHHH
Confidence 3689999999999999999999998 99999977654421000 000000 0000
Q ss_pred ------ccc--ccChhhhccCCcEEEcCCeEEEeecCCCCeEEecCCcE--EecCeEEEecCCCCCcCCCCCCCCcEEEe
Q psy2951 1120 ------SIL--LRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTS--IDFTKIYLATGSSPRTISQADGVNKVFYL 1189 (1466)
Q Consensus 1120 ------~~~--~~~~~~~~~~~v~~~~~~~v~~i~d~~~~~v~~~~g~~--~~yd~lvlAtG~~~~~~~~~~g~~~v~~~ 1189 (1466)
.+. .....++.+.+++++.++ +..+ |+....|.+.+|.. +.||+||+|||++|+.|++| |.++ +
T Consensus 82 ~~~~~~~l~~~~~~~~~~~~~~v~~~~g~-v~~i-d~~~~~V~~~~g~~~~~~~d~lviAtG~~p~~p~i~-G~~~---~ 155 (466)
T 3l8k_A 82 RKDYVQELRFKQHKRNMSQYETLTFYKGY-VKIK-DPTHVIVKTDEGKEIEAETRYMIIASGAETAKLRLP-GVEY---C 155 (466)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTEEEESEE-EEEE-ETTEEEEEETTSCEEEEEEEEEEECCCEEECCCCCT-TGGG---S
T ss_pred HHHhheeccccchHHHHHHhCCCEEEEeE-EEEe-cCCeEEEEcCCCcEEEEecCEEEECCCCCccCCCCC-Cccc---e
Confidence 000 112235567799999885 9999 98877888888888 99999999999999999999 8774 4
Q ss_pred cCHHHHHhhhcccC-CCCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCc
Q psy2951 1190 RTVEDANNIAPHIT-PESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKA 1268 (1466)
Q Consensus 1190 ~~~~~~~~l~~~~~-~~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~ 1268 (1466)
.+.+++.++++.+. .+++++|||+|++|+|+|..|++.|.+|+++++.+++++..+++++.+.+.+.++ |++++++
T Consensus 156 ~t~~~~~~~~~~l~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~---v~i~~~~ 232 (466)
T 3l8k_A 156 LTSDDIFGYKTSFRKLPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLEDQDIVNTLLSILK---LNIKFNS 232 (466)
T ss_dssp BCHHHHHSTTCSCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCCHHHHHHHHHHHC---CCEECSC
T ss_pred EeHHHHHHHHHHHhhCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCCCCCHHHHHHHHhcCE---EEEEECC
Confidence 46677765554333 4799999999999999999999999999999999988875558999998888776 9999999
Q ss_pred eEEEEEecCC-CcEEEEEcC--CCC--eeecCEEEEeeccccCccc-cccCCceeeCCCeEEeCCCccccCCCEEEeccc
Q psy2951 1269 NVSSFEKNEK-NDVTAANLD--NGT--TIPADLVIVGIGTVLNTNY-LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 1342 (1466)
Q Consensus 1269 ~v~~i~~~~~-g~~~~v~l~--~g~--~i~~D~vv~a~G~~p~~~~-~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~ 1342 (1466)
+|++++ .++ +.+ .+.+. +|+ ++++|.|++|+|..|++++ ++..|+.++++| |.||+++||+.|+|||+|||
T Consensus 233 ~v~~i~-~~~~~~v-~v~~~~~~G~~~~i~~D~vi~a~G~~p~~~l~l~~~gl~~~~~G-i~vd~~~~t~~~~Iya~GD~ 309 (466)
T 3l8k_A 233 PVTEVK-KIKDDEY-EVIYSTKDGSKKSIFTNSVVLAAGRRPVIPEGAREIGLSISKTG-IVVDETMKTNIPNVFATGDA 309 (466)
T ss_dssp CEEEEE-EEETTEE-EEEECCTTSCCEEEEESCEEECCCEEECCCTTTGGGTCCBCSSS-BCCCTTCBCSSTTEEECGGG
T ss_pred EEEEEE-EcCCCcE-EEEEEecCCceEEEEcCEEEECcCCCcccccchhhcCceeCCCC-EeECCCccCCCCCEEEEEec
Confidence 999998 332 333 47777 676 7999999999999999995 788999999888 99999999999999999999
Q ss_pred ccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCC--CC---CCCCCccceeccccccEEEEeeCC------CCceEEEc
Q psy2951 1343 AYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEK--KT---SLSTIPFFWTMLFGVGFRFAGYAA------GHTQVDIV 1411 (1466)
Q Consensus 1343 a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~--~~---~~~~~p~~w~~~~~~~~~~~g~~~------~~~~~~~~ 1411 (1466)
+..|.. +..|..||+.||.||+|. .. .+..+| |....+..+-.+|..+ +.+-.+..
T Consensus 310 ~~~~~~-----------~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p--~~~~~~~~~a~vG~te~~a~~~g~~~~~~~ 376 (466)
T 3l8k_A 310 NGLAPY-----------YHAAVRMSIAAANNIMANGMPVDYVDVKSIP--VTIYTIPSLSYVGILPSKARKMGIEIVEAE 376 (466)
T ss_dssp TCSCCS-----------HHHHHHHHHHHHHHHHTTTSCCCCCCSTTSC--EEECSSSCEEEEECCHHHHHHHTCCEEEEE
T ss_pred CCCCcc-----------HhHHHHHHHHHHHHHhCCCCCccccCCCCCc--EEEECCCCeEEecCCHHHHHhCCCCEEEEE
Confidence 987544 378999999999999986 32 344455 4444578888888753 22211211
Q ss_pred C----------CcCCceEEEEEEe--CCEEEEEEEecCcH--HHHHHHHHHHcCCCCChhcccc
Q psy2951 1412 G----------DLEALKFTAYYSN--ADKVLAILTVGMDP--LAAQFAERIKMQKYIQKDQIEN 1461 (1466)
Q Consensus 1412 ~----------~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 1461 (1466)
- ..++..|++.+++ .++++|+..+|... .+..+.-+|+.+ ++.++|++
T Consensus 377 ~~~~~~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~--~t~~~l~~ 438 (466)
T 3l8k_A 377 YNMEEDVSAQIYGQKEGVLKLIFERGSMRLIGAWMIGVHSQYLINELGLAVAYG--LNAKQLAS 438 (466)
T ss_dssp EEGGGSHHHHHHTCCCCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTT--CBHHHHHH
T ss_pred EEcccChhheecCCCeEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCc--CCHHHHhc
Confidence 0 0124568887775 48999999999852 233444566665 45555533
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-33 Score=342.00 Aligned_cols=358 Identities=20% Similarity=0.282 Sum_probs=264.5
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCC---CC-CCchhh-------------------c-------
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD---RV-KLSKQL-------------------D------- 1115 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~---~~-~l~~~~-------------------~------- 1115 (1466)
+++|+|||||+||++||..|++.|. +|+|||++. ++.. +. ..++.+ .
T Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~--~V~lie~~~-~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~~g~~~~~~~ 81 (458)
T 1lvl_A 5 QTTLLIIGGGPGGYVAAIRAGQLGI--PTVLVEGQA-LGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPR 81 (458)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHTC--CEEEECSSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCC--EEEEEccCC-CCCcCCCcCcHhHHHHHHHHHHHHHHhhcccccccCcccCCCc
Confidence 4689999999999999999999998 999999843 2200 00 000000 0
Q ss_pred cCcccccc-----------cChhhhccCCcEEEcCCeEEEeecCCCCeEEecCCcEEecCeEEEecCCCCCcCC-CCCCC
Q psy2951 1116 IKADSILL-----------RTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTIS-QADGV 1183 (1466)
Q Consensus 1116 ~~~~~~~~-----------~~~~~~~~~~v~~~~~~~v~~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~~~~~~-~~~g~ 1183 (1466)
.+...+.. ...+++++.+++++.++ +..+ +. ++|.+++ .++.||+||||||++|+.|+ ++ .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~~-~~--~~v~v~~-~~~~~d~lviATGs~p~~~~~~~--~ 154 (458)
T 1lvl_A 82 LDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGW-AKVL-DG--KQVEVDG-QRIQCEHLLLATGSSSVELPMLP--L 154 (458)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSC-EEEE-ET--TEEEETT-EEEECSEEEECCCEEECCBTTBC--C
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEE-EEEc-cC--CEEEEee-EEEEeCEEEEeCCCCCCCCCCCC--c
Confidence 00000000 01245667899999998 5557 63 6788876 78999999999999998776 44 2
Q ss_pred CcEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcE
Q psy2951 1184 NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVK 1263 (1466)
Q Consensus 1184 ~~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~ 1263 (1466)
++ .+.+.+++..+. ..+++++|||+|++|+|+|..|++.|.+|+++++.+.+++ .+++++.+.+.+.++++||+
T Consensus 155 ~~--~v~~~~~~~~~~---~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~gv~ 228 (458)
T 1lvl_A 155 GG--PVISSTEALAPK---ALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILP-TYDSELTAPVAESLKKLGIA 228 (458)
T ss_dssp BT--TEECHHHHTCCS---SCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHHTCE
T ss_pred cC--cEecHHHHhhhh---ccCCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCcccc-ccCHHHHHHHHHHHHHCCCE
Confidence 32 123566664443 2478999999999999999999999999999999998886 78899999999999999999
Q ss_pred EEcCceEEEEEecCCCcEEEEEcCCC--CeeecCEEEEeeccccCccc--cccCCceeeCCCeEEeCCCccccCCCEEEe
Q psy2951 1264 FVMKANVSSFEKNEKNDVTAANLDNG--TTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAG 1339 (1466)
Q Consensus 1264 ~~~~~~v~~i~~~~~g~~~~v~l~~g--~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~ 1339 (1466)
++++++|++++ . +. ..+...+| +++++|.||+|+|..|++++ ++.+|+.++.+ +|.||++++|+.|+|||+
T Consensus 229 i~~~~~v~~i~-~--~~-v~v~~~~G~~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~-~i~vd~~~~t~~~~Iya~ 303 (458)
T 1lvl_A 229 LHLGHSVEGYE-N--GC-LLANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGA-AIAIDERCQTSMHNVWAI 303 (458)
T ss_dssp EETTCEEEEEE-T--TE-EEEECSSSCCCEECCSCEEECCCEEECCSSSSGGGSCCCEETT-EECCCTTCBCSSTTEEEC
T ss_pred EEECCEEEEEE-e--CC-EEEEECCCceEEEECCEEEECcCCCcCCCCCCcHhcCCcccCC-EEeECCCCcCCCCCEEEe
Confidence 99999999998 3 33 34554567 68999999999999999986 67889998877 899999999999999999
Q ss_pred cccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCCCCC--CCCCccceeccccccEEEEeeCC-----CCceEEEcC
Q psy2951 1340 GDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS--LSTIPFFWTMLFGVGFRFAGYAA-----GHTQVDIVG 1412 (1466)
Q Consensus 1340 GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~~~--~~~~p~~w~~~~~~~~~~~g~~~-----~~~~~~~~~ 1412 (1466)
|||+..|.. ++.|..||+.||.||+|...+ +..+|++ ..++..+-.+|..+ ...++.+-.
T Consensus 304 GD~~~~~~~-----------~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~--~~~~p~~a~vG~~e~~a~~~g~~~~~~~ 370 (458)
T 1lvl_A 304 GDVAGEPML-----------AHRAMAQGEMVAEIIAGKARRFEPAAIAAV--CFTDPEVVVVGKTPEQASQQGLDCIVAQ 370 (458)
T ss_dssp GGGGCSSCC-----------HHHHHHHHHHHHHHHTTCCCCCCCSCCCEE--ECSSSEEEEEECCHHHHHHTTCCEEEEE
T ss_pred eccCCCccc-----------HHHHHHHHHHHHHHhcCCCccCCCCCCCEE--EECCCCeEEEeCCHHHHHHcCCCEEEEE
Confidence 999986543 378999999999999996655 4556644 33456666667642 111122100
Q ss_pred -----------CcCCceEEEEEE--eCCEEEEEEEecCc--HHHHHHHHHHHcCCCCChhcc
Q psy2951 1413 -----------DLEALKFTAYYS--NADKVLAILTVGMD--PLAAQFAERIKMQKYIQKDQI 1459 (1466)
Q Consensus 1413 -----------~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 1459 (1466)
.-++..|+++++ ++++|+|+..+|.. ..+..+.-+|+.+. +.++|
T Consensus 371 ~~~~~~~~~~~~~~~~g~~kl~~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~--~~~~l 430 (458)
T 1lvl_A 371 FPFAANGRAMSLESKSGFVRVVARRDNHLILGWQAVGVAVSELSTAFAQSLEMGA--CLEDV 430 (458)
T ss_dssp EEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTGGGHHHHHHHHHHHTC--BHHHH
T ss_pred EECccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCC--CHHHH
Confidence 112356887777 47999999999986 44566666777774 44444
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-33 Score=345.72 Aligned_cols=347 Identities=22% Similarity=0.275 Sum_probs=259.4
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCc----------c-----------------chhcc--
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK----------L-----------------SKQLD-- 644 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~----------~-----------------~~~~~-- 644 (1466)
..+||+||||||||++||+.|+++|++ |+++|+++..+..... . ...++
T Consensus 2 ~~~DVvVIGgG~aGl~aA~~la~~G~~--V~liEk~~~~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g~~ 79 (476)
T 3lad_A 2 QKFDVIVIGAGPGGYVAAIKSAQLGLK--TALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGIS 79 (476)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHHTCC--EEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEE
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCCE--EEEEeCCCccCCCCCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 368999999999999999999999988 8888887522111000 0 00000
Q ss_pred -----cCcccc-----------cccCHhHhhhCCcEEEEceEEEEeccccccEEEccCC--CEEecCEEEEcCCCCCCcC
Q psy2951 645 -----IKADSI-----------LLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTI 706 (1466)
Q Consensus 645 -----~~~~~~-----------~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~--~~~~~d~lviAtG~~~~~~ 706 (1466)
.+...+ .......+++.+++++.++ +..+ +.....+...++ .++.||+||||||++|..|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~-~~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~ 157 (476)
T 3lad_A 80 TGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGH-GKLL-AGKKVEVTAADGSSQVLDTENVILASGSKPVEI 157 (476)
T ss_dssp CSCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESE-EEEC-STTCEEEECTTSCEEEECCSCEEECCCEEECCC
T ss_pred cCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEe-cCCEEEEEcCCCceEEEEcCEEEEcCCCCCCCC
Confidence 000000 0111234556799999998 5556 777777877776 5799999999999999877
Q ss_pred CCCCCCC--cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHH
Q psy2951 707 SQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITK 784 (1466)
Q Consensus 707 ~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~ 784 (1466)
+.+ +.+ .++ +..+... ....+++++|||+|++|+|+|..|++.|.+|+++++.+.++ +.+++++.+.+.+
T Consensus 158 ~~~-~~~~~~v~---~~~~~~~---~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-~~~~~~~~~~l~~ 229 (476)
T 3lad_A 158 PPA-PVDQDVIV---DSTGALD---FQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFL-PAVDEQVAKEAQK 229 (476)
T ss_dssp TTS-CCCSSSEE---EHHHHTS---CSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS-TTSCHHHHHHHHH
T ss_pred CCC-CCCcccEE---echhhhc---cccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC-cccCHHHHHHHHH
Confidence 766 444 333 2333332 23458999999999999999999999999999999999877 4789999999999
Q ss_pred HHHhcCcEEEccceEEEEEecCCCceEEEECCCC---cEEecCEEEEccccccCccc--cccCCceeeCCCcEEeCCCCC
Q psy2951 785 LFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG---TTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLE 859 (1466)
Q Consensus 785 ~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g---~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~ 859 (1466)
.+++.||++++++++++++..++ .+ .+.+.++ +++++|.||+|+|++|++++ ++..|++++++|+|.||++++
T Consensus 230 ~l~~~Gv~v~~~~~v~~i~~~~~-~~-~v~~~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~ 307 (476)
T 3lad_A 230 ILTKQGLKILLGARVTGTEVKNK-QV-TVKFVDAEGEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDYCA 307 (476)
T ss_dssp HHHHTTEEEEETCEEEEEEECSS-CE-EEEEESSSEEEEEEESEEEECSCEEECCTTCCSSCCSCCBCTTSCBCCCTTSB
T ss_pred HHHhCCCEEEECCEEEEEEEcCC-EE-EEEEEeCCCcEEEECCEEEEeeCCcccCCCCCccccCccccCCCCEeeCCCcc
Confidence 99999999999999999985433 33 3555443 67999999999999999874 688899999999999999999
Q ss_pred CCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCCc--CcccCeeeeeecCceeEEeeccCC----
Q psy2951 860 TNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS--LSTIPFFWTMLFGVGFRFAGYAAG---- 933 (1466)
Q Consensus 860 t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~---- 933 (1466)
|+.|+|||+|||+..+. .++.|..||+.||++|+++... +..+|+ ..+++..+..+|+++.
T Consensus 308 t~~~~Iya~GD~~~~~~-----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~--~~~~~~~~a~vGlte~~a~~ 374 (476)
T 3lad_A 308 TSVPGVYAIGDVVRGAM-----------LAHKASEEGVVVAERIAGHKAQMNYDLIPA--VIYTHPEIAGVGKTEQALKA 374 (476)
T ss_dssp CSSTTEEECGGGSSSCC-----------CHHHHHHHHHHHHHHHHHCCCCCCTTCCCE--EECSSSEEEEEECCHHHHHH
T ss_pred cCCCCEEEEEccCCCcc-----------cHHHHHHHHHHHHHHhcCCCcccCCCCCCE--EEECcCCEEEeeCCHHHHHh
Confidence 99999999999996554 3478999999999999987654 445553 3356677888888752
Q ss_pred --CCceeEec----------ccccceEEEEEe--cCCeEEEEEeecCc
Q psy2951 934 --HTQVDIVG----------DLEALKFTAYYS--NADKVLAILTVGMD 967 (1466)
Q Consensus 934 --~~~~~~~~----------~~~~~~~~~~~~--~~~~i~g~~~~g~~ 967 (1466)
.+-....- ..++..|+|+++ ++++++|++++|.+
T Consensus 375 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~ 422 (476)
T 3lad_A 375 EGVAINVGVFPFAASGRAMAANDTAGFVKVIADAKTDRVLGVHVIGPS 422 (476)
T ss_dssp TTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTCBEEEEEEEETT
T ss_pred cCCCEEEEEEeccccchheecCCCcEEEEEEEECCCCEEEEEEEECCC
Confidence 11111110 013457899988 46899999999986
|
| >4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-34 Score=350.75 Aligned_cols=297 Identities=18% Similarity=0.323 Sum_probs=238.6
Q ss_pred CCCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhc-c-cCcccccccCHhHh--hhCCcEEE
Q psy2951 591 SSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL-D-IKADSILLRTEEFY--KDNDIHVI 666 (1466)
Q Consensus 591 ~~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~--~~~gv~~~ 666 (1466)
..+.+++|||||||+||+++|..|++.+++ |+++++++++.|.+. +.... + .+..++...+.... ++.+++++
T Consensus 38 ~~~~KprVVIIGgG~AGl~~A~~L~~~~~~--VtLId~~~~~~~~Pl-L~~va~G~l~~~~i~~p~~~~~~~~~~~v~~~ 114 (502)
T 4g6h_A 38 QHSDKPNVLILGSGWGAISFLKHIDTKKYN--VSIISPRSYFLFTPL-LPSAPVGTVDEKSIIEPIVNFALKKKGNVTYY 114 (502)
T ss_dssp CSCSSCEEEEECSSHHHHHHHHHSCTTTCE--EEEEESSSEEECGGG-GGGTTTTSSCGGGGEEEHHHHHTTCSSCEEEE
T ss_pred CCCCCCCEEEECCcHHHHHHHHHhhhCCCc--EEEECCCCCcccccc-hhHHhhccccHHHhhhhHHHHHHhhcCCeEEE
Confidence 344578999999999999999999988765 999999987666432 22211 1 34445554444443 34589999
Q ss_pred EceEEEEeccccccEEEcc--------------------CCCEEecCEEEEcCCCCCCcCCCCCCCC-cEEEecCHHHHH
Q psy2951 667 KGKKIISDSELNEKKIKLQ--------------------DGTSIDFTKIYLATGSSPRTISQADGVN-KVFYLRTVEDAN 725 (1466)
Q Consensus 667 ~~~~v~~i~~~~~~~v~~~--------------------~~~~~~~d~lviAtG~~~~~~~~~~g~~-~~~~~~~~~~~~ 725 (1466)
.++ |+.+ |.++++|++. ++.++.||+||||||++|..+++| |.+ +.+.+++++++.
T Consensus 115 ~~~-v~~I-D~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~~~ip-G~~e~a~~l~t~~dA~ 191 (502)
T 4g6h_A 115 EAE-ATSI-NPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTFGIP-GVTDYGHFLKEIPNSL 191 (502)
T ss_dssp EEE-EEEE-EGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECCTTCT-THHHHCEECSSHHHHH
T ss_pred EEE-EEEE-EhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCcccccCCcc-CcccccCCCCCHHHHH
Confidence 987 9999 9998888753 356899999999999999999999 876 778899999887
Q ss_pred hhcccC----------C-------CCCcEEEECCChHHHHHHHHHhccC--------------CeEEEEeecCccCcccc
Q psy2951 726 NIAPHI----------T-------PESNVVVIGSSFIGMEAAAFCASKV--------------KSVTVVGRGAVPFQESL 774 (1466)
Q Consensus 726 ~~~~~~----------~-------~~~~vvVvG~G~~g~e~A~~l~~~g--------------~~V~lv~~~~~~~~~~~ 774 (1466)
.+.+.+ . ...+++|||||++|+|+|..|++++ .+|+++++.++++ +.+
T Consensus 192 ~ir~~l~~~~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il-~~~ 270 (502)
T 4g6h_A 192 EIRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVL-NMF 270 (502)
T ss_dssp HHHHHHHHHHHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSS-TTS
T ss_pred HHHHHHHHHHHHHhcccccchhhccccceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccc-cCC
Confidence 765432 1 1247999999999999999887542 6899999999887 579
Q ss_pred CHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCc----EEecCEEEEccccccCc---cccccCCceee
Q psy2951 775 GKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGT----TIPADLVIVGIGTVLNT---NYLDGKGVELN 847 (1466)
Q Consensus 775 ~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~----~i~~D~vi~a~G~~p~~---~~~~~~gl~~~ 847 (1466)
++++++.+.+.|+++||++++++++++++ +++........+|+ +|++|+||||+|.+|+. ++....++..+
T Consensus 271 ~~~~~~~~~~~L~~~GV~v~~~~~v~~v~--~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~~~~~~l~~~~~~~~~ 348 (502)
T 4g6h_A 271 EKKLSSYAQSHLENTSIKVHLRTAVAKVE--EKQLLAKTKHEDGKITEETIPYGTLIWATGNKARPVITDLFKKIPEQNS 348 (502)
T ss_dssp CHHHHHHHHHHHHHTTCEEETTEEEEEEC--SSEEEEEEECTTSCEEEEEEECSEEEECCCEECCHHHHHHHHHSGGGTT
T ss_pred CHHHHHHHHHHHHhcceeeecCceEEEEe--CCceEEEEEecCcccceeeeccCEEEEccCCcCCHHHHhHHHhcccccc
Confidence 99999999999999999999999999998 33334455667764 69999999999999983 34455667777
Q ss_pred CCCcEEeCCCCCC-CCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhcc
Q psy2951 848 GQKAVVVNEYLET-NVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVE 905 (1466)
Q Consensus 848 ~~G~i~vd~~~~t-~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~ 905 (1466)
.+|+|.||++||+ ++|||||+|||+..+.++ .++.|.+||+.+|+||..
T Consensus 349 ~~g~I~Vd~~lq~~~~~~IfAiGD~a~~~~p~---------~a~~A~qqg~~~A~ni~~ 398 (502)
T 4g6h_A 349 SKRGLAVNDFLQVKGSNNIFAIGDNAFAGLPP---------TAQVAHQEAEYLAKNFDK 398 (502)
T ss_dssp CCSSEEBCTTSBBTTCSSEEECGGGEESSSCC---------CHHHHHHHHHHHHHHHHH
T ss_pred CCCceeECCccccCCCCCEEEEEcccCCCCCC---------chHHHHHHHHHHHHHHHH
Confidence 8899999999998 799999999999876544 778999999999999964
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=347.17 Aligned_cols=346 Identities=21% Similarity=0.284 Sum_probs=257.4
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCcc---------------------chhcc-------cC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKL---------------------SKQLD-------IK 646 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~---------------------~~~~~-------~~ 646 (1466)
++||+||||||||++||..|+++|++ |+++|+.+.+++..... ...++ .+
T Consensus 25 ~~dVvVIGgG~aGl~aA~~la~~G~~--V~liEk~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~ 102 (491)
T 3urh_A 25 AYDLIVIGSGPGGYVCAIKAAQLGMK--VAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVEVANPKLN 102 (491)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHTTCC--EEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGGTEECCCCEEC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCe--EEEEecCCCCCCccccccchhhHHHHHHHHHHHHHHhhHhhcCcccCCCccC
Confidence 58999999999999999999999988 88888865544311000 00000 00
Q ss_pred ccc-----------ccccCHhHhhhCCcEEEEceEEEEeccccccEEEccCC--CEEecCEEEEcCCCCCCcCCCCCCCC
Q psy2951 647 ADS-----------ILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPRTISQADGVN 713 (1466)
Q Consensus 647 ~~~-----------~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~--~~~~~d~lviAtG~~~~~~~~~~g~~ 713 (1466)
... +.......+++.+++++.++ +..+ +.....+.+.++ .++.||+||||||++|. ++| |.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~-~~~~~~v~~~~g~~~~~~~d~lViATGs~p~--~ip-g~~ 177 (491)
T 3urh_A 103 LQKMMAHKDATVKSNVDGVSFLFKKNKIDGFQGT-GKVL-GQGKVSVTNEKGEEQVLEAKNVVIATGSDVA--GIP-GVE 177 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESE-EEEC-SSSEEEEECTTSCEEEEECSEEEECCCEECC--CBT-TBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEe-cCCEEEEEeCCCceEEEEeCEEEEccCCCCC--CCC-Ccc
Confidence 000 11112334667899999998 5556 666777777666 57999999999999864 344 543
Q ss_pred ----cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhc
Q psy2951 714 ----KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESK 789 (1466)
Q Consensus 714 ----~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~ 789 (1466)
... ..+..+... ....+++++|||+|++|+|+|..|++.|.+|+++++.+.++ +.+++++.+.+.+.+++.
T Consensus 178 ~~~~~~~-~~~~~~~~~---~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-~~~d~~~~~~l~~~l~~~ 252 (491)
T 3urh_A 178 VAFDEKT-IVSSTGALA---LEKVPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTIL-GGMDGEVAKQLQRMLTKQ 252 (491)
T ss_dssp CCCCSSS-EECHHHHTS---CSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSS-SSSCHHHHHHHHHHHHHT
T ss_pred cccCCee-EEehhHhhh---hhhcCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecccccc-ccCCHHHHHHHHHHHHhC
Confidence 111 224444433 33458999999999999999999999999999999999877 468999999999999999
Q ss_pred CcEEEccceEEEEEecCCCceEEEECC---CC--cEEecCEEEEccccccCccc--cccCCceeeCCCcEEeCCCCCCCC
Q psy2951 790 GVKFVMKANVSSFEKNEKNDVTAANLD---NG--TTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNV 862 (1466)
Q Consensus 790 gv~~~~~~~v~~i~~~~~~~~~~v~~~---~g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t~~ 862 (1466)
||++++++++++++..+++ ..+.+. +| +++++|.||+|+|++|++++ ++..|++++++|+|.||+++||+.
T Consensus 253 gV~v~~~~~v~~i~~~~~~--~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~ 330 (491)
T 3urh_A 253 GIDFKLGAKVTGAVKSGDG--AKVTFEPVKGGEATTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDRHFQTSI 330 (491)
T ss_dssp TCEEECSEEEEEEEEETTE--EEEEEEETTSCCCEEEEESEEEECCCCEECCTTSCHHHHTCCBCTTSCBCCCTTCBCSS
T ss_pred CCEEEECCeEEEEEEeCCE--EEEEEEecCCCceEEEEcCEEEEeeCCccCCCccCchhcCceECCCCCEeECCCCCCCC
Confidence 9999999999999854332 234443 24 58999999999999999986 677899999999999999999999
Q ss_pred CCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCCc--CcccCeeeeeecCceeEEeeccCC------C
Q psy2951 863 PGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS--LSTIPFFWTMLFGVGFRFAGYAAG------H 934 (1466)
Q Consensus 863 ~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~------~ 934 (1466)
|+|||+|||+..+. .+..|..||+.+|.+|++.... +..+|+ ..+++..+..+|+++. .
T Consensus 331 ~~IyA~GD~~~~~~-----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~--~~~~~p~~a~vGlte~~a~~~g~ 397 (491)
T 3urh_A 331 AGVYAIGDVVRGPM-----------LAHKAEDEGVAVAEIIAGQAGHVNYDVIPG--VVYTQPEVASVGKTEEELKAAGV 397 (491)
T ss_dssp TTEEECGGGSSSCC-----------CHHHHHHHHHHHHHHHTTSCCCCCTTCCCE--EECSSSCEEEEECCHHHHHHTTC
T ss_pred CCEEEEEecCCCcc-----------chhHHHHHHHHHHHHHcCCCcccCCCCCCE--EEEccCCeEEEeCCHHHHHhCCC
Confidence 99999999996553 4579999999999999987654 344553 3356777888888752 1
Q ss_pred CceeEec----------ccccceEEEEEe--cCCeEEEEEeecCc
Q psy2951 935 TQVDIVG----------DLEALKFTAYYS--NADKVLAILTVGMD 967 (1466)
Q Consensus 935 ~~~~~~~----------~~~~~~~~~~~~--~~~~i~g~~~~g~~ 967 (1466)
+-..... ..++..|+|+++ ++++++|++++|..
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~ 442 (491)
T 3urh_A 398 AYKIGKFPFTANGRARAMLQTDGFVKILADKETDRVLGGHIIGFG 442 (491)
T ss_dssp CEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEESTT
T ss_pred CEEEEEEecCcchhhhcCCCCcEEEEEEEECCCCEEEEEEEECCC
Confidence 1111110 113457899988 47999999999986
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=346.12 Aligned_cols=361 Identities=22% Similarity=0.317 Sum_probs=269.2
Q ss_pred CcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCC----CCchhhc----------------------cCccc
Q psy2951 1067 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV----KLSKQLD----------------------IKADS 1120 (1466)
Q Consensus 1067 ~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~----~l~~~~~----------------------~~~~~ 1120 (1466)
++|+|||||+||++||..|++.|. +|+|||+++.++.... ..++.+. .+...
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g~--~V~lie~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 79 (455)
T 2yqu_A 2 YDLLVIGAGPGGYVAAIRAAQLGM--KVGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAKKGLLGAKVKGVELDLPA 79 (455)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTC--CEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHCCTTEEECCEEECHHH
T ss_pred CCEEEECCChhHHHHHHHHHHCCC--eEEEEeCCCCCCCccceecchhHHHHHHHHHHHHHHhhhcCCcccCCCccCHHH
Confidence 579999999999999999999998 9999999865432100 0001000 00000
Q ss_pred ccc-----------cChhhhccCCcEEEcCCeEEEeecCCCCeEEecCCcEEecCeEEEecCCCCCcCCCCCCCC--cEE
Q psy2951 1121 ILL-----------RTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN--KVF 1187 (1466)
Q Consensus 1121 ~~~-----------~~~~~~~~~~v~~~~~~~v~~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~--~v~ 1187 (1466)
+.. ...+++++.+++++.++ +..+ ++....|.+ +|.++.||+||+|||++|+.|+++ |.+ +++
T Consensus 80 ~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~-~~~i-~~~~~~v~~-~g~~~~~d~lviAtG~~p~~~~~~-g~~~~~v~ 155 (455)
T 2yqu_A 80 LMAHKDKVVQANTQGVEFLFKKNGIARHQGT-ARFL-SERKVLVEE-TGEELEARYILIATGSAPLIPPWA-QVDYERVV 155 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCEEEESC-EEES-SSSEEEETT-TCCEEEEEEEEECCCEEECCCTTB-CCCSSSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEe-cCCeEEEee-CCEEEEecEEEECCCCCCCCCCCC-CCCcCcEe
Confidence 000 01234556689999988 5567 654333433 678899999999999999999888 765 333
Q ss_pred EecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcC
Q psy2951 1188 YLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMK 1267 (1466)
Q Consensus 1188 ~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~ 1267 (1466)
+.+++..+. ..+++++|||+|++|+|+|..|++.|.+|+++++.+.+++ .+++++.+.+.+.++++||+++++
T Consensus 156 ---~~~~~~~~~---~~~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~-~~~~~~~~~l~~~l~~~Gv~i~~~ 228 (455)
T 2yqu_A 156 ---TSTEALSFP---EVPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILP-TMDLEVSRAAERVFKKQGLTIRTG 228 (455)
T ss_dssp ---CHHHHTCCS---SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT-TSCHHHHHHHHHHHHHHTCEEECS
T ss_pred ---chHHhhccc---cCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCcccc-ccCHHHHHHHHHHHHHCCCEEEEC
Confidence 455554332 2468999999999999999999999999999999988775 578899999999999999999999
Q ss_pred ceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccCccc--cccCCceeeCCCeEEeCCCccccCCCEEEecccccC
Q psy2951 1268 ANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYA 1345 (1466)
Q Consensus 1268 ~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~ 1345 (1466)
++|++++ .++ ....+.+.+|+++++|.||+|+|..|++++ ++..|+.++.+|++.||++++|+.|+|||+|||+..
T Consensus 229 ~~V~~i~-~~~-~~v~v~~~~g~~i~~D~vv~A~G~~p~~~~l~~~~~g~~~~~~g~i~vd~~~~t~~~~iya~GD~~~~ 306 (455)
T 2yqu_A 229 VRVTAVV-PEA-KGARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPVDEHLRTRVPHIYAIGDVVRG 306 (455)
T ss_dssp CCEEEEE-EET-TEEEEEETTSCEEEESEEEECSCEEECCTTCCGGGGTCCCCTTSCCCCCTTSBCSSTTEEECGGGSSS
T ss_pred CEEEEEE-EeC-CEEEEEECCCeEEEcCEEEECcCCCcCCCCCChhhcCCccCCCCcEeECCCcccCCCCEEEEecCCCC
Confidence 9999998 333 334577788999999999999999999986 677899888778999999999999999999999876
Q ss_pred CCccCCCceeeeecHHHHHHHHHHHHHHhcCCCCCC--CCCccceeccccccEEEEeeCCC-----CceEEE--------
Q psy2951 1346 PLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSL--STIPFFWTMLFGVGFRFAGYAAG-----HTQVDI-------- 1410 (1466)
Q Consensus 1346 p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~~~~--~~~p~~w~~~~~~~~~~~g~~~~-----~~~~~~-------- 1410 (1466)
+.. ++.|..||+.||.||+|...++ ..+| |...++..+-.+|..+. ..++.+
T Consensus 307 ~~~-----------~~~A~~~g~~aa~~i~~~~~~~~~~~~p--~~~~~~~~~a~~G~~~~~a~~~g~~~~~~~~~~~~~ 373 (455)
T 2yqu_A 307 PML-----------AHKASEEGIAAVEHMVRGFGHVDYQAIP--SVVYTHPEIAAVGYTEEELKAQGIPYKVGKFPYSAS 373 (455)
T ss_dssp CCC-----------HHHHHHHHHHHHHHHHHSCCCCCGGGCC--EEECSSSEEEEEECCHHHHHHHTCCEEEEEEEGGGC
T ss_pred ccC-----------HHHHHHhHHHHHHHHcCCCccCCCCCCC--EEEEcCCceEEEECCHHHHHHcCCCEEEEEEEcccc
Confidence 543 3789999999999999866554 3455 44445677777776421 112221
Q ss_pred -----cCCcCCceEEEEEEe--CCEEEEEEEecCc--HHHHHHHHHHHcCCCCChhcc
Q psy2951 1411 -----VGDLEALKFTAYYSN--ADKVLAILTVGMD--PLAAQFAERIKMQKYIQKDQI 1459 (1466)
Q Consensus 1411 -----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 1459 (1466)
.+ ++..|++++++ +++|+|+..+|.+ ..+..+.-+|+.+. +.+++
T Consensus 374 ~~~~~~~--~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~--~~~~~ 427 (455)
T 2yqu_A 374 GRARAMG--ETEGFIKVLAHAKTDRILGVHGIGARVGDVLAEAALALFFKA--SAEDL 427 (455)
T ss_dssp HHHHHHT--CCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTC--BHHHH
T ss_pred hHHHhcC--CCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCC--CHHHH
Confidence 12 24568888775 7999999999986 33455556777764 34444
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-33 Score=342.41 Aligned_cols=343 Identities=17% Similarity=0.234 Sum_probs=260.9
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCc----c----------------chhcc-------cCc
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK----L----------------SKQLD-------IKA 647 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~----~----------------~~~~~-------~~~ 647 (1466)
.+||+||||||||+++|+.|+++|++ |+++|+. .+++.... . ...+. .+.
T Consensus 5 ~~DVvVIGaG~aGl~aA~~la~~G~~--V~liEk~-~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 81 (463)
T 4dna_A 5 DYDLFVIGGGSGGVRSGRLAAALGKK--VAIAEEF-RYGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGESRFDW 81 (463)
T ss_dssp SEEEEEECCSHHHHHHHHHHHTTTCC--EEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEECCCEECH
T ss_pred CCcEEEECcCHHHHHHHHHHHhCCCE--EEEEeCC-CCCCcccccCchhhHHHHHHHHHHHHHHHHHhcCcccCCCCcCH
Confidence 58999999999999999999999998 7888883 22221000 0 00000 011
Q ss_pred c-----------cccccCHhHhhhCCcEEEEceEEEEeccccccEEEc-cCCCEEecCEEEEcCCCCCC-cCCCCCCCCc
Q psy2951 648 D-----------SILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKL-QDGTSIDFTKIYLATGSSPR-TISQADGVNK 714 (1466)
Q Consensus 648 ~-----------~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~-~~~~~~~~d~lviAtG~~~~-~~~~~~g~~~ 714 (1466)
. .+...+..++++.+++++.++ +..+ + .+.+.+ .++..+.||++|||||++|. .|+++ |.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~i-~--~~~v~~~~~~~~~~~d~lviAtG~~p~~~p~i~-G~~~ 156 (463)
T 4dna_A 82 AKLVAAKEQEIARLEGLYRKGLANAGAEILDTR-AELA-G--PNTVKLLASGKTVTAERIVIAVGGHPSPHDALP-GHEL 156 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESC-EEES-S--SSEEEETTTTEEEEEEEEEECCCEEECCCTTST-TGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEe-e--CCEEEEecCCeEEEeCEEEEecCCCcccCCCCC-Cccc
Confidence 1 112223344566799999997 6666 4 346666 46788999999999999999 99998 8764
Q ss_pred EEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEE
Q psy2951 715 VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFV 794 (1466)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~ 794 (1466)
+ .+.++...+. ..+++++|||+|++|+|+|..+++.|.+|+++++.+.++ +.+++++.+.+.+.+++.||+++
T Consensus 157 ~---~~~~~~~~~~---~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l-~~~~~~~~~~l~~~l~~~Gv~i~ 229 (463)
T 4dna_A 157 C---ITSNEAFDLP---ALPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEIL-SRFDQDMRRGLHAAMEEKGIRIL 229 (463)
T ss_dssp C---BCHHHHTTCS---SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-TTSCHHHHHHHHHHHHHTTCEEE
T ss_pred c---ccHHHHhhhh---cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc-cccCHHHHHHHHHHHHHCCCEEE
Confidence 3 3445544332 348999999999999999999999999999999998877 67899999999999999999999
Q ss_pred ccceEEEEEecCCCceEEEE-CCCCcEEecCEEEEccccccCccc--cccCCceeeCCCcEEeCCCCCCCCCCeEEeccc
Q psy2951 795 MKANVSSFEKNEKNDVTAAN-LDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 871 (1466)
Q Consensus 795 ~~~~v~~i~~~~~~~~~~v~-~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~ 871 (1466)
+++.+++++..+++ ...+. +++|+ +++|.||+|+|++|++.+ ++..|++++++|+|.||+++||+.|+|||+|||
T Consensus 230 ~~~~v~~i~~~~~~-~~~v~~~~~g~-i~aD~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~iya~GD~ 307 (463)
T 4dna_A 230 CEDIIQSVSADADG-RRVATTMKHGE-IVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSRTSTPGIYALGDV 307 (463)
T ss_dssp CSCCEEEEEECTTS-CEEEEESSSCE-EEESEEEECSCEEESCTTSSTGGGTCCBCTTSCBCCCTTCBCSSTTEEECSGG
T ss_pred CCCEEEEEEEcCCC-EEEEEEcCCCe-EEeCEEEEeeCcccCCCCCCccccCceECCCCCEeECcCCCCCCCCEEEEEec
Confidence 99999999854343 34678 88887 999999999999999887 788899999999999999999999999999999
Q ss_pred cccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCC---cCcccCeeeeeecCceeEEeeccCCCC-----cee-Ee--
Q psy2951 872 AYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT---SLSTIPFFWTMLFGVGFRFAGYAAGHT-----QVD-IV-- 940 (1466)
Q Consensus 872 ~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~-----~~~-~~-- 940 (1466)
+..+. .++.|..||+.+|.||++... .+..+|+. .+....+..+|+++... +.. ..
T Consensus 308 ~~~~~-----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~--~~~~p~~a~vG~te~~a~~~~~~~~~~~~~ 374 (463)
T 4dna_A 308 TDRVQ-----------LTPVAIHEAMCFIETEYKNNPTSPDHDLIATA--VFSQPEIGTVGITEEEAARKFQEIEVYRAE 374 (463)
T ss_dssp GSSCC-----------CHHHHHHHHHHHHHHHHSSCCCCCCCSCCCEE--ECSSSCEEEEECCHHHHHHHSSEEEEEEEE
T ss_pred CCCCC-----------ChHHHHHHHHHHHHHHcCCCCcccCCCCCCEE--EECCCCeEEecCCHHHHHHcCCCeEEEEEe
Confidence 87543 457899999999999998643 34455532 23446677888765211 110 00
Q ss_pred --c------ccccceEEEEEe--cCCeEEEEEeecCc
Q psy2951 941 --G------DLEALKFTAYYS--NADKVLAILTVGMD 967 (1466)
Q Consensus 941 --~------~~~~~~~~~~~~--~~~~i~g~~~~g~~ 967 (1466)
. .-++..|+|+++ ++++++|++++|.+
T Consensus 375 ~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~ 411 (463)
T 4dna_A 375 FRPMKATLSGRKEKTIMKLVVNAADRKVVGAHILGHD 411 (463)
T ss_dssp ECCTTHHHHCCCCCEEEEEEEETTTCBEEEEEEESTT
T ss_pred ccccchhhcCCCceEEEEEEEECCCCEEEEEEEECCC
Confidence 0 012567899988 46899999999976
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-33 Score=344.96 Aligned_cols=351 Identities=20% Similarity=0.269 Sum_probs=255.2
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC--------CCCCCCCcc---c-h----------------hc-
Q psy2951 593 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN--------FLPYDRVKL---S-K----------------QL- 643 (1466)
Q Consensus 593 ~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~--------~~~~~~~~~---~-~----------------~~- 643 (1466)
...+||+||||||||++||..|+++|.+ |+++|+++ .+++..... + + .+
T Consensus 30 ~~~~DVvVIGgGpaGl~aA~~la~~G~~--V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~g 107 (519)
T 3qfa_A 30 SYDYDLIIIGGGSGGLAAAKEAAQYGKK--VMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYG 107 (519)
T ss_dssp SCSEEEEEECCSHHHHHHHHHHHHTTCC--EEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhCCCe--EEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhcC
Confidence 3468999999999999999999999988 88888753 111100000 0 0 00
Q ss_pred -------ccCccccccc-----------CHhHhhhCCcEEEEceEEEEeccccccEEEccCCC--EEecCEEEEcCCCCC
Q psy2951 644 -------DIKADSILLR-----------TEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGT--SIDFTKIYLATGSSP 703 (1466)
Q Consensus 644 -------~~~~~~~~~~-----------~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~--~~~~d~lviAtG~~~ 703 (1466)
..+...+..+ ....++..+|+++.++ +..+ +.....+.+.+++ ++.||+||||||++|
T Consensus 108 ~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g~-a~~~-d~~~v~v~~~~g~~~~i~~d~lViATGs~p 185 (519)
T 3qfa_A 108 WKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAY-GQFI-GPHRIKATNNKGKEKIYSAERFLIATGERP 185 (519)
T ss_dssp BCCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSE-EEEE-ETTEEEEECTTCCCCEEEEEEEEECCCEEE
T ss_pred cccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEe-eCCEEEEEcCCCCEEEEECCEEEEECCCCc
Confidence 0011111111 1224556799999988 7777 7777777766664 799999999999999
Q ss_pred CcCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHH
Q psy2951 704 RTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERIT 783 (1466)
Q Consensus 704 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~ 783 (1466)
+.|+++ |.+.. ..+..+...+. ..+++++|||+|++|+|+|..|+++|.+||++++. .. .+.+++++.+.+.
T Consensus 186 ~~p~i~-G~~~~--~~t~~~~~~l~---~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~-~~-l~~~d~~~~~~~~ 257 (519)
T 3qfa_A 186 RYLGIP-GDKEY--CISSDDLFSLP---YCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-IL-LRGFDQDMANKIG 257 (519)
T ss_dssp CCCCCT-THHHH--CBCHHHHTTCS---SCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CS-STTSCHHHHHHHH
T ss_pred CCCCCC-CccCc--eEcHHHHhhhh---hcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecc-cc-cccCCHHHHHHHH
Confidence 999998 86521 23445544332 34788999999999999999999999999999985 33 4678999999999
Q ss_pred HHHHhcCcEEEccceEEEEEecCC---Cce-EEEECCCC-c--EEecCEEEEccccccCccc--cccCCceee-CCCcEE
Q psy2951 784 KLFESKGVKFVMKANVSSFEKNEK---NDV-TAANLDNG-T--TIPADLVIVGIGTVLNTNY--LDGKGVELN-GQKAVV 853 (1466)
Q Consensus 784 ~~l~~~gv~~~~~~~v~~i~~~~~---~~~-~~v~~~~g-~--~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~~G~i~ 853 (1466)
+.|+++||+++++..+++++..++ +.+ ..+...++ + ++++|.||+|+|++|++++ ++..|++++ ++|+|.
T Consensus 258 ~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~~G~I~ 337 (519)
T 3qfa_A 258 EHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIP 337 (519)
T ss_dssp HHHHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEESCSSSCSTTTTCCCCTTTCCBC
T ss_pred HHHHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcccCCCCChhhcCcEEcCCCCeEe
Confidence 999999999999988888764322 222 22333454 2 5789999999999999986 688899998 679999
Q ss_pred eCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCC---cCcccCeeeeeecCceeEEeec
Q psy2951 854 VNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT---SLSTIPFFWTMLFGVGFRFAGY 930 (1466)
Q Consensus 854 vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~---~~~~~~~~~~~~~~~~~~~~g~ 930 (1466)
||+++||+.|+|||+|||+.... ..++.|..||++||+||++... .+..+|+ ..+++..+..+|+
T Consensus 338 Vd~~~~Ts~~~IyA~GD~~~g~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~--~~~~~p~~a~vGl 405 (519)
T 3qfa_A 338 VTDEEQTNVPYIYAIGDILEDKV----------ELTPVAIQAGRLLAQRLYAGSTVKCDYENVPT--TVFTPLEYGACGL 405 (519)
T ss_dssp CCTTSBCSSTTEEECGGGBSSSC----------CCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCE--EECSSSCEEEEEC
T ss_pred eCCCCccCCCCEEEEEeccCCCC----------ccHHHHHHHHHHHHHHHcCCCCccCCCCcCcE--EEECCCceEEecC
Confidence 99999999999999999984211 2457899999999999997643 3445553 3355677888888
Q ss_pred cCCCC-------ceeE-e----c-------ccccceEEEEEec---CCeEEEEEeecCc
Q psy2951 931 AAGHT-------QVDI-V----G-------DLEALKFTAYYSN---ADKVLAILTVGMD 967 (1466)
Q Consensus 931 ~~~~~-------~~~~-~----~-------~~~~~~~~~~~~~---~~~i~g~~~~g~~ 967 (1466)
++... .... . . ..++..|+|++++ +++++|++++|.+
T Consensus 406 te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~~ilGa~i~g~~ 464 (519)
T 3qfa_A 406 SEEKAVEKFGEENIEVYHSYFWPLEWTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPN 464 (519)
T ss_dssp CHHHHHHHHCGGGEEEEEEEECCHHHHTTTCCTTTEEEEEEEETTTTCEEEEEEEESTT
T ss_pred CHHHHHhhCCCCCEEEEEEeccchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCC
Confidence 75311 1111 0 0 0124679999883 4899999999987
|
| >4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-33 Score=340.01 Aligned_cols=347 Identities=19% Similarity=0.273 Sum_probs=251.8
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCC--------CCCCCCc----------------------cchhcc
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENF--------LPYDRVK----------------------LSKQLD 644 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~--------~~~~~~~----------------------~~~~~~ 644 (1466)
.+|++||||||||++||..++++|.+ |.++|+... +++ .|. ....++
T Consensus 42 dYDviVIG~GpaG~~aA~~aa~~G~k--ValIE~~~~~~~~~k~~lGG-tCln~GCIPsK~L~~aa~~~~~~~~~~~~~G 118 (542)
T 4b1b_A 42 DYDYVVIGGGPGGMASAKEAAAHGAR--VLLFDYVKPSSQGTKWGIGG-TCVNVGCVPKKLMHYAGHMGSIFKLDSKAYG 118 (542)
T ss_dssp SEEEEEECCSHHHHHHHHHHHTTTCC--EEEECCCCCCTTCCCCCSSH-HHHHHSHHHHHHHHHHHHHHHHHHHTGGGGT
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCe--EEEEeccccccccccCCCCC-cccccchHHHHHHHHHHHHHHHHHhhhHhcC
Confidence 58999999999999999999999998 788885431 111 000 000011
Q ss_pred -------cCccccccc-----------CHhHhhhCCcEEEEceEEEEeccccccEEEcc----CCCEEecCEEEEcCCCC
Q psy2951 645 -------IKADSILLR-----------TEEFYKDNDIHVIKGKKIISDSELNEKKIKLQ----DGTSIDFTKIYLATGSS 702 (1466)
Q Consensus 645 -------~~~~~~~~~-----------~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~----~~~~~~~d~lviAtG~~ 702 (1466)
.+...+..+ ....+++.+|+++.+. ...+ +.....|... +++++++|++|||||++
T Consensus 119 i~~~~~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~~i~G~-a~f~-~~~~v~V~~~~~~~~~~~i~a~~iiIATGs~ 196 (542)
T 4b1b_A 119 WKFDNLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYINGL-AKLK-DKNTVSYYLKGDLSKEETVTGKYILIATGCR 196 (542)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEE-EEEE-ETTEEEEEEC--CCCEEEEEEEEEEECCCEE
T ss_pred cccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeee-EEEc-CCCcceEeecccCCceEEEeeeeEEeccCCC
Confidence 111111111 1234567899999888 5555 5554444332 33579999999999999
Q ss_pred CCcCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHH
Q psy2951 703 PRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERI 782 (1466)
Q Consensus 703 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~ 782 (1466)
|..|+.+ +.+... ..+.+++..+. ..+++++|||||++|+|+|..++++|.+||++.++ +.+ +.+++++.+.+
T Consensus 197 P~~P~~~-~~~~~~-~~ts~~~l~l~---~lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~-~~L-~~~D~ei~~~l 269 (542)
T 4b1b_A 197 PHIPDDV-EGAKEL-SITSDDIFSLK---KDPGKTLVVGASYVALECSGFLNSLGYDVTVAVRS-IVL-RGFDQQCAVKV 269 (542)
T ss_dssp ECCCSSS-BTHHHH-CBCHHHHTTCS---SCCCSEEEECCSHHHHHHHHHHHHHTCCEEEEESS-CSS-TTSCHHHHHHH
T ss_pred CCCCCcc-cCCCcc-ccCchhhhccc---cCCceEEEECCCHHHHHHHHHHHhcCCeEEEeccc-ccc-cccchhHHHHH
Confidence 9999766 333111 12556655443 34899999999999999999999999999999875 444 67899999999
Q ss_pred HHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCccc--cccCCceeeCCCc-EEeCCCCC
Q psy2951 783 TKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKA-VVVNEYLE 859 (1466)
Q Consensus 783 ~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~~G~-i~vd~~~~ 859 (1466)
.+.|+++||+++++..+.+++..+ + ...+.+.++.++.+|.|++|+|++||++. ++..|+.++..++ +.+|+++|
T Consensus 270 ~~~l~~~gi~~~~~~~v~~~~~~~-~-~~~v~~~~~~~~~~D~vLvAvGR~Pnt~~L~le~~gv~~~~~~~~i~vd~~~~ 347 (542)
T 4b1b_A 270 KLYMEEQGVMFKNGILPKKLTKMD-D-KILVEFSDKTSELYDTVLYAIGRKGDIDGLNLESLNMNVNKSNNKIIADHLSC 347 (542)
T ss_dssp HHHHHHTTCEEEETCCEEEEEEET-T-EEEEEETTSCEEEESEEEECSCEEESCGGGCGGGTTCCEETTTTEECCCTTSB
T ss_pred HHHHHhhcceeecceEEEEEEecC-C-eEEEEEcCCCeEEEEEEEEcccccCCccccCcccceeeecccCceEecccccc
Confidence 999999999999999999998443 2 34677888889999999999999999986 4677889887765 47889999
Q ss_pred CCCCCeEEecccccc-CCcccCCceeeeccHHHHHHHHHHHHHHhccCCC---cCcccCeeeeeecCceeEEeeccCCCC
Q psy2951 860 TNVPGVYAGGDIAYA-PLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT---SLSTIPFFWTMLFGVGFRFAGYAAGHT 935 (1466)
Q Consensus 860 t~~~~iya~GD~~~~-~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~ 935 (1466)
|+.|+|||+|||+.. |. +++.|..||++++.+|++... .+..+|+. .+..+.+..+|+++...
T Consensus 348 Ts~p~IyAiGDv~~~~p~-----------La~~A~~eg~~aa~~i~g~~~~~~d~~~iP~~--vft~PeiA~VGlTE~eA 414 (542)
T 4b1b_A 348 TNIPSIFAVGDVAENVPE-----------LAPVAIKAGEILARRLFKDSDEIMDYSYIPTS--IYTPIEYGACGYSEEKA 414 (542)
T ss_dssp CSSTTEEECTTSBTTCCC-----------CHHHHHHHHHHHHHHHHSCCCCCCCCSSCCEE--ECSSSCEEEEECCHHHH
T ss_pred ccCCCeEEeccccCCchh-----------HHHHHHHHHHHHHHHHhcCCCcccCCCCCceE--EeCCCCeEEEeCCHHHH
Confidence 999999999999854 33 347899999999999998543 35566643 24556678888764210
Q ss_pred -------ce-eE------------------e-------cccccceEEEEEe---cCCeEEEEEeecCch
Q psy2951 936 -------QV-DI------------------V-------GDLEALKFTAYYS---NADKVLAILTVGMDP 968 (1466)
Q Consensus 936 -------~~-~~------------------~-------~~~~~~~~~~~~~---~~~~i~g~~~~g~~~ 968 (1466)
.. .. . ...++..|+|+++ ++++++|++++|...
T Consensus 415 ~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vKli~~~~~t~~ILGa~ivG~~A 483 (542)
T 4b1b_A 415 YELYGKSNVEVFLQEFNNLEISAVHRQKHIRAQKDEYDLDVSSTCLAKLVCLKNEDNRVIGFHYVGPNA 483 (542)
T ss_dssp HHHHCTTTEEEEEC-----------------------------CCCEEEEEETTTTTBEEEEEEESTTH
T ss_pred HHhCCCCcEEEEEeeccchhhhhhhhhhhhhcccccccccCCCceEEEEEEEeCCCCEEEEEEEECCCH
Confidence 00 00 0 0112456888876 468999999999873
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-33 Score=340.37 Aligned_cols=347 Identities=20% Similarity=0.266 Sum_probs=255.4
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCC---------CCCCCCccc---------------------hh
Q psy2951 593 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENF---------LPYDRVKLS---------------------KQ 642 (1466)
Q Consensus 593 ~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~---------~~~~~~~~~---------------------~~ 642 (1466)
...+||+||||||||++||..|+++|++ |+++|+... +++ .+... ..
T Consensus 7 ~~~~DvvVIGgG~aGl~aA~~la~~G~~--V~liEk~~~~~~~~~~~~~GG-~c~~~gciPsk~l~~~~~~~~~~~~~~~ 83 (483)
T 3dgh_A 7 SYDYDLIVIGGGSAGLACAKEAVLNGAR--VACLDFVKPTPTLGTKWGVGG-TCVNVGCIPKKLMHQASLLGEAVHEAAA 83 (483)
T ss_dssp CCSEEEEEECCSHHHHHHHHHHHHTTCC--EEEECCCCCCTTTTCCCCSSC-HHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCE--EEEEEeccccccccccCCcCC-eecccCchhhHHHHHHHHHHHHHHHHHh
Confidence 4568999999999999999999999988 788874210 111 00000 00
Q ss_pred cc--------cCccccccc-----------CHhHhhhCCcEEEEceEEEEeccccccEEEccCCC-EEecCEEEEcCCCC
Q psy2951 643 LD--------IKADSILLR-----------TEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGT-SIDFTKIYLATGSS 702 (1466)
Q Consensus 643 ~~--------~~~~~~~~~-----------~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~-~~~~d~lviAtG~~ 702 (1466)
++ .+...+..+ ....++..+++++.++ +..+ +.....+.+.++. ++.||+||||||++
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a~~~-~~~~v~v~~~~g~~~~~~d~lviATGs~ 161 (483)
T 3dgh_A 84 YGWNVDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGL-GSFV-DSHTLLAKLKSGERTITAQTFVIAVGGR 161 (483)
T ss_dssp TTBCCCCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSE-EEEE-ETTEEEEECTTCCEEEEEEEEEECCCEE
T ss_pred cCcccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEc-cCCEEEEEeCCCeEEEEcCEEEEeCCCC
Confidence 00 111111111 1133566799999888 6566 6666677776664 79999999999999
Q ss_pred CCcCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHH
Q psy2951 703 PRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERI 782 (1466)
Q Consensus 703 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~ 782 (1466)
|+.|+++ |.+.. ..+..+...+ ...+++++|||+|++|+|+|..|++.|.+|+++++. ..+ +.+++++.+.+
T Consensus 162 p~~p~i~-G~~~~--~~~~~~~~~~---~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~l-~~~d~~~~~~l 233 (483)
T 3dgh_A 162 PRYPDIP-GAVEY--GITSDDLFSL---DREPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRS-IVL-RGFDQQMAELV 233 (483)
T ss_dssp ECCCSST-THHHH--CBCHHHHTTC---SSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-CSS-TTSCHHHHHHH
T ss_pred cCCCCCC-Ccccc--cCcHHHHhhh---hhcCCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCC-CCC-cccCHHHHHHH
Confidence 9999999 87521 1244554433 234899999999999999999999999999999985 333 67899999999
Q ss_pred HHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCc-----EEecCEEEEccccccCcccc--ccCCceeeCCCcEEeC
Q psy2951 783 TKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGT-----TIPADLVIVGIGTVLNTNYL--DGKGVELNGQKAVVVN 855 (1466)
Q Consensus 783 ~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~-----~i~~D~vi~a~G~~p~~~~~--~~~gl~~~~~G~i~vd 855 (1466)
.+.|+++||++++++.+++++..+++.+ .+.+.++. ++++|.||+|+|++|+++++ +..|+++++ |+|.||
T Consensus 234 ~~~l~~~Gv~i~~~~~v~~i~~~~~~~~-~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~-G~i~vd 311 (483)
T 3dgh_A 234 AASMEERGIPFLRKTVPLSVEKQDDGKL-LVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQK-DKIPVD 311 (483)
T ss_dssp HHHHHHTTCCEEETEEEEEEEECTTSCE-EEEEEETTTCCEEEEEESEEEECSCEEECCGGGTGGGTTCCCBT-TBBCCC
T ss_pred HHHHHhCCCEEEeCCEEEEEEEcCCCcE-EEEEecCCCCceeEEEcCEEEECcccccCcCcCCchhcCccccC-CEEEEC
Confidence 9999999999999999999985444433 45555443 79999999999999999876 888999998 999999
Q ss_pred CCCCCCCCCeEEecccccc-CCcccCCceeeeccHHHHHHHHHHHHHHhccCCC---cCcccCeeeeeecCceeEEeecc
Q psy2951 856 EYLETNVPGVYAGGDIAYA-PLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT---SLSTIPFFWTMLFGVGFRFAGYA 931 (1466)
Q Consensus 856 ~~~~t~~~~iya~GD~~~~-~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~---~~~~~~~~~~~~~~~~~~~~g~~ 931 (1466)
++++|+.|+|||+|||+.. +. .++.|..||+++|.||++... .+..+|+.. +....+..+|++
T Consensus 312 ~~~~t~~~~IyA~GD~~~~~~~-----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~--~~~p~~a~vGlt 378 (483)
T 3dgh_A 312 SQEATNVANIYAVGDIIYGKPE-----------LTPVAVLAGRLLARRLYGGSTQRMDYKDVATTV--FTPLEYACVGLS 378 (483)
T ss_dssp TTCBCSSTTEEECSTTBTTSCC-----------CHHHHHHHHHHHHHHHHSCCCCCCCCTTCCEEE--CSSSEEEEEECC
T ss_pred cCCccCCCCEEEEEcccCCCCc-----------cHHHHHHHHHHHHHHHcCCCCCcCCCCCCCEEE--ECCCccEEEeCC
Confidence 9999999999999999842 32 457899999999999998643 355666432 445667788877
Q ss_pred CCC-------CceeE-e----c-c------cccceEEEEEec---CCeEEEEEeecCc
Q psy2951 932 AGH-------TQVDI-V----G-D------LEALKFTAYYSN---ADKVLAILTVGMD 967 (1466)
Q Consensus 932 ~~~-------~~~~~-~----~-~------~~~~~~~~~~~~---~~~i~g~~~~g~~ 967 (1466)
+.. ..... . . . -++..|+|++++ +++++|++++|.+
T Consensus 379 e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~~~~~~~ilG~~~~g~~ 436 (483)
T 3dgh_A 379 EEDAVKQFGADEIEVFHGYYKPTEFFIPQKSVRYCYLKAVAERHGDQRVYGLHYIGPV 436 (483)
T ss_dssp HHHHHHHHCGGGEEEEEEECCCGGGTTTTCCCTTCEEEEEEESSTTCBEEEEEEEETT
T ss_pred HHHHHhhCCCCCEEEEEEeecchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCC
Confidence 521 11110 0 0 0 124569999883 5899999999986
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-32 Score=337.61 Aligned_cols=348 Identities=21% Similarity=0.272 Sum_probs=256.1
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC--------CCCCCCCcc----c----------------hhcc-
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN--------FLPYDRVKL----S----------------KQLD- 644 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~--------~~~~~~~~~----~----------------~~~~- 644 (1466)
..+||+||||||||++||..|+++|.+ |+++|+.+ .+++..... . ..++
T Consensus 5 ~~~DvvVIG~G~aGl~aA~~la~~G~~--V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~~~~~g~ 82 (488)
T 3dgz_A 5 QSFDLLVIGGGSGGLACAKEAAQLGKK--VAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYGW 82 (488)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCC--EEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCe--EEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHHHHHHhcCc
Confidence 458999999999999999999999988 88888621 122100000 0 0000
Q ss_pred -------cCccccccc-----------CHhHhhhCCcEEEEceEEEEeccccccEEEccCC--CEEecCEEEEcCCCCCC
Q psy2951 645 -------IKADSILLR-----------TEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPR 704 (1466)
Q Consensus 645 -------~~~~~~~~~-----------~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~--~~~~~d~lviAtG~~~~ 704 (1466)
.+...+..+ ....+++.+++++.++ +..+ +.....+.+.++ .++.||+||||||++|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g~-~~~~-~~~~v~v~~~~g~~~~~~~d~lViATGs~p~ 160 (488)
T 3dgz_A 83 EVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIK-ASFV-DEHTVRGVDKGGKATLLSAEHIVIATGGRPR 160 (488)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCE-EEES-SSSEEEEECTTSCEEEEEEEEEEECCCEEEC
T ss_pred ccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEc-cCCeEEEEeCCCceEEEECCEEEEcCCCCCC
Confidence 011111111 2234556799999888 7666 777777777666 47999999999999999
Q ss_pred cCC-CCCCCC-cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHH
Q psy2951 705 TIS-QADGVN-KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERI 782 (1466)
Q Consensus 705 ~~~-~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~ 782 (1466)
.|+ +| |.+ .. .+..+...+ ...+++++|||+|++|+|+|..|++.|.+|+++++.+ . .+.+++++.+.+
T Consensus 161 ~p~~i~-G~~~~~---~~~~~~~~~---~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~-~-l~~~d~~~~~~l 231 (488)
T 3dgz_A 161 YPTQVK-GALEYG---ITSDDIFWL---KESPGKTLVVGASYVALECAGFLTGIGLDTTVMMRSI-P-LRGFDQQMSSLV 231 (488)
T ss_dssp CCSSCB-THHHHC---BCHHHHTTC---SSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-S-STTSCHHHHHHH
T ss_pred CCCCCC-Cccccc---CcHHHHHhh---hhcCCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCc-c-cccCCHHHHHHH
Confidence 998 88 865 22 244454433 2358899999999999999999999999999999864 3 367899999999
Q ss_pred HHHHHhcCcEEEccceEEEEEecCCCceEEEECC---CCc--EEecCEEEEccccccCccc--cccCCceee-CCCcEEe
Q psy2951 783 TKLFESKGVKFVMKANVSSFEKNEKNDVTAANLD---NGT--TIPADLVIVGIGTVLNTNY--LDGKGVELN-GQKAVVV 854 (1466)
Q Consensus 783 ~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~---~g~--~i~~D~vi~a~G~~p~~~~--~~~~gl~~~-~~G~i~v 854 (1466)
.+.|+++||++++++.+.+++..+++.+ .+.+. +|+ ++++|.||+|+|++|++++ ++..|++++ ++|+|.|
T Consensus 232 ~~~l~~~gv~~~~~~~v~~i~~~~~~~~-~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~~G~i~v 310 (488)
T 3dgz_A 232 TEHMESHGTQFLKGCVPSHIKKLPTNQL-QVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIV 310 (488)
T ss_dssp HHHHHHTTCEEEETEEEEEEEECTTSCE-EEEEEETTTTEEEEEEESEEEECSCEEESCGGGTGGGGTCCBCSSSCCBCC
T ss_pred HHHHHHCCCEEEeCCEEEEEEEcCCCcE-EEEEEeCCCCeeEEEECCEEEEcccCCcccCcCCccccCcEecCCCCeEeE
Confidence 9999999999999999999985434333 34433 254 5799999999999999987 678899998 7899999
Q ss_pred CCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCC---cCcccCeeeeeecCceeEEeecc
Q psy2951 855 NEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT---SLSTIPFFWTMLFGVGFRFAGYA 931 (1466)
Q Consensus 855 d~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~---~~~~~~~~~~~~~~~~~~~~g~~ 931 (1466)
|+++||+.|+|||+|||+.... ..++.|..||+++|.||++... .+..+|+.. +....+..+|++
T Consensus 311 d~~~~t~~~~IyA~GD~~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~--~~~p~~a~vGlt 378 (488)
T 3dgz_A 311 DAQEATSVPHIYAIGDVAEGRP----------ELTPTAIKAGKLLAQRLFGKSSTLMDYSNVPTTV--FTPLEYGCVGLS 378 (488)
T ss_dssp CTTSBCSSTTEEECGGGBTTCC----------CCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCEEE--CSSSEEEEEECC
T ss_pred CCCCccCCCCEEEeEEecCCCC----------cchhHHHHHHHHHHHHHcCCCCccCCCCCCCEEE--ECCCCeEEEeCC
Confidence 9999999999999999984211 2457899999999999998643 355566433 445667888877
Q ss_pred CCC-------CceeE-e----c------c-cccceEEEEEec---CCeEEEEEeecCc
Q psy2951 932 AGH-------TQVDI-V----G------D-LEALKFTAYYSN---ADKVLAILTVGMD 967 (1466)
Q Consensus 932 ~~~-------~~~~~-~----~------~-~~~~~~~~~~~~---~~~i~g~~~~g~~ 967 (1466)
+.. ..... . . . .++..|+|++++ +++++|++++|.+
T Consensus 379 e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~~ilG~~~~g~~ 436 (488)
T 3dgz_A 379 EEEAVALHGQEHVEVYHAYYKPLEFTVADRDASQCYIKMVCMREPPQLVLGLHFLGPN 436 (488)
T ss_dssp HHHHHHHHCGGGEEEEEEECCCHHHHHTTCCCTTCEEEEEEESSTTCBEEEEEEEETT
T ss_pred HHHHHhhCCCCcEEEEEccccchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCC
Confidence 521 11111 1 0 0 014679999884 5899999999986
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-32 Score=337.33 Aligned_cols=343 Identities=20% Similarity=0.256 Sum_probs=257.2
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCcc----c----------------hhcc-------cCc
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKL----S----------------KQLD-------IKA 647 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~----~----------------~~~~-------~~~ 647 (1466)
.+||+|||||+||++||+.|+++|++ |+++|+. .+++..... . ..++ .+.
T Consensus 26 ~~DVvVIGgG~aGl~aA~~la~~G~~--V~liEk~-~~GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 102 (484)
T 3o0h_A 26 DFDLFVIGSGSGGVRAARLAGALGKR--VAIAEEY-RIGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKYADPIFNW 102 (484)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHTTCC--EEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTBCCCCCEECH
T ss_pred CCCEEEECcCHHHHHHHHHHHhCcCE--EEEEeCC-CCCCceeccCccccHHHHHHHHHHHHHHHHHhCCcccCCCccCH
Confidence 57999999999999999999999988 8888884 222210000 0 0000 000
Q ss_pred -----------ccccccCHhHhhhCCcEEEEceEEEEeccccccEEEcc-CCCEEecCEEEEcCCCCCC-cCCCCCCCCc
Q psy2951 648 -----------DSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQ-DGTSIDFTKIYLATGSSPR-TISQADGVNK 714 (1466)
Q Consensus 648 -----------~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~-~~~~~~~d~lviAtG~~~~-~~~~~~g~~~ 714 (1466)
..+.......+++.+++++.++ +..+ +. +.+.+. ++..+.||++|||||+.|. .|+++ |.+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~i-~~--~~v~v~~~~~~~~~d~lviAtG~~p~~~p~i~-G~~~ 177 (484)
T 3o0h_A 103 EKLVAAKNKEISRLEGLYREGLQNSNVHIYESR-AVFV-DE--HTLELSVTGERISAEKILIATGAKIVSNSAIK-GSDL 177 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESC-EEEE-ET--TEEEETTTCCEEEEEEEEECCCEEECCC--CB-TGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEe-eC--CEEEEecCCeEEEeCEEEEccCCCcccCCCCC-Cccc
Confidence 1122223345667899999997 6666 43 456665 6789999999999999999 88888 8764
Q ss_pred EEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEE
Q psy2951 715 VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFV 794 (1466)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~ 794 (1466)
++ +..+... ....+++++|||+|++|+|+|..|++.|.+|+++++.+.++ +.+++++.+.+.+.+++.||+++
T Consensus 178 ~~---~~~~~~~---~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-~~~~~~~~~~l~~~l~~~Gv~i~ 250 (484)
T 3o0h_A 178 CL---TSNEIFD---LEKLPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLIL-RNFDYDLRQLLNDAMVAKGISII 250 (484)
T ss_dssp SB---CTTTGGG---CSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-TTSCHHHHHHHHHHHHHHTCEEE
T ss_pred cc---cHHHHHh---HHhcCCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCccc-cccCHHHHHHHHHHHHHCCCEEE
Confidence 32 2233222 22348999999999999999999999999999999998776 56899999999999999999999
Q ss_pred ccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCccc--cccCCceeeCCCcEEeCCCCCCCCCCeEEecccc
Q psy2951 795 MKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIA 872 (1466)
Q Consensus 795 ~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~ 872 (1466)
+++++++++.. ++.+ .+.+.+|+++++|.||+|+|++|++.+ ++..|++++++|+|.||++++|+.|+|||+|||+
T Consensus 251 ~~~~V~~i~~~-~~~v-~v~~~~g~~i~aD~Vi~A~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~ 328 (484)
T 3o0h_A 251 YEATVSQVQST-ENCY-NVVLTNGQTICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEKMTTNVSHIWAVGDVT 328 (484)
T ss_dssp SSCCEEEEEEC-SSSE-EEEETTSCEEEESEEEECCCEEECCTTCCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECGGGG
T ss_pred eCCEEEEEEee-CCEE-EEEECCCcEEEcCEEEEeeCCCcCCCCCChhhcCceECCCCCEeECCCCCCCCCCEEEEEecC
Confidence 99999999853 3334 678889999999999999999999887 6778999999999999999999999999999998
Q ss_pred ccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCC---cCcccCeeeeeecCceeEEeeccCCCC-----ceeE-ec--
Q psy2951 873 YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT---SLSTIPFFWTMLFGVGFRFAGYAAGHT-----QVDI-VG-- 941 (1466)
Q Consensus 873 ~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~-----~~~~-~~-- 941 (1466)
..+. .++.|..||+.+|.||++... .+..+|+. .+....+..+|+++... +... ..
T Consensus 329 ~~~~-----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~--~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~ 395 (484)
T 3o0h_A 329 GHIQ-----------LTPVAIHDAMCFVKNAFENTSTTPDYDLITTA--VFSQPEIGTVGLSEEDALHRYKRVEIYRTVF 395 (484)
T ss_dssp TSCC-----------CHHHHHHHHHHHHHHHHC---CCCCCTTCCEE--ECCSSCEEEEECCHHHHHHHCSEEEEEEEEE
T ss_pred CCCc-----------CHHHHHHHHHHHHHHHcCCCCCcCCCCCCcEE--EECCCCEEEeeCCHHHHHHcCCCEEEEEecC
Confidence 7543 457899999999999998543 34555532 23456688888775211 1110 00
Q ss_pred --------ccccceEEEEEe--cCCeEEEEEeecCc
Q psy2951 942 --------DLEALKFTAYYS--NADKVLAILTVGMD 967 (1466)
Q Consensus 942 --------~~~~~~~~~~~~--~~~~i~g~~~~g~~ 967 (1466)
.-+...|+|+++ ++++++|++++|..
T Consensus 396 ~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~ 431 (484)
T 3o0h_A 396 RPMRNVLSGSPEKMFMKLVVDGESRIVVGAHVLGEN 431 (484)
T ss_dssp CCHHHHHHTCCCCEEEEEEEETTTCBEEEEEEESTT
T ss_pred CcchhhccCCCCcEEEEEEEECCCCEEEEEEEECcC
Confidence 112567899988 46899999999976
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-32 Score=342.77 Aligned_cols=380 Identities=19% Similarity=0.251 Sum_probs=262.5
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCC-C-----CCCC---CCc-cch----------------hccc-
Q psy2951 41 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN-F-----LPYD---RVK-LSK----------------QLDI- 93 (1466)
Q Consensus 41 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~-~-----~~~~---~~~-~~~----------------~~~~- 93 (1466)
..++||+||||||||++||..|++.|+++.|++..... . .... ... .++ .+..
T Consensus 105 ~~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~~~~~~g~~ 184 (598)
T 2x8g_A 105 KYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHFGWS 184 (598)
T ss_dssp SSSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cccccEEEECCCccHHHHHHHHHhCCCeEEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHHhhHHhCCcc
Confidence 34689999999999999999999999998886542111 0 0000 000 000 0000
Q ss_pred --------Cccccccc-----------ChhhhhcCCeEEEeCceEEEeccccccEEEecCC--cEEecCEEEEccCCCCC
Q psy2951 94 --------KADSILLR-----------TEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSSPR 152 (1466)
Q Consensus 94 --------~~~~~~~~-----------~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~--~~~~~d~lviAtG~~~~ 152 (1466)
+..++..+ ....++..+++++.+..... +....++...+| .++.||+||||||++|+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~--~~~~v~v~~~~g~~~~~~~d~lviAtGs~p~ 262 (598)
T 2x8g_A 185 LDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLI--SPHEVQITDKNQKVSTITGNKIILATGERPK 262 (598)
T ss_dssp CCGGGCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEE--ETTEEEEECTTCCEEEEEEEEEEECCCEEEC
T ss_pred ccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEc--CCCEEEEEeCCCCeEEEEeCEEEEeCCCCCC
Confidence 00111111 11224567899988765443 222333444455 46899999999999998
Q ss_pred CCCCCCCCCc-EEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHH
Q psy2951 153 TISQADGVNK-VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERIT 231 (1466)
Q Consensus 153 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~ 231 (1466)
.++ +++... .. +..+...+. ..+++++|||||++|+|+|..|++.|.+||++++. .+.+.+++++.+.+.
T Consensus 263 ~p~-i~G~~~~~~---~~~~~~~~~---~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~--~~l~~~d~~~~~~~~ 333 (598)
T 2x8g_A 263 YPE-IPGAVEYGI---TSDDLFSLP---YFPGKTLVIGASYVALECAGFLASLGGDVTVMVRS--ILLRGFDQQMAEKVG 333 (598)
T ss_dssp CCS-STTHHHHCE---EHHHHTTCS---SCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS--CSSTTSCHHHHHHHH
T ss_pred CCC-CCCcccceE---cHHHHhhCc---cCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC--cCcCcCCHHHHHHHH
Confidence 554 555422 12 233333322 34578999999999999999999999999999987 334568899999999
Q ss_pred HHHHhCCcEEEcCceEEEEEec-----CC---CCeE-EEEcCCCcEEe--ccEEEEeeccccCccc--cccCCceecCCc
Q psy2951 232 KLFESKGVKFVMKANVSSFEKN-----EK---NDVT-AANLDNGTTIP--ADLVIVGIGTVLNTNY--LDGKGVELNGQK 298 (1466)
Q Consensus 232 ~~l~~~GV~i~~~~~v~~i~~~-----~~---~~~~-~v~~~~g~~i~--~D~Vi~a~G~~p~~~~--l~~~gl~~~~~g 298 (1466)
+.+++.||++++++.+++++.. ++ +.+. .+.+.+|++++ +|.||+|+|++||+++ ++..|++++++|
T Consensus 334 ~~l~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G 413 (598)
T 2x8g_A 334 DYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNG 413 (598)
T ss_dssp HHHHHTTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCEEECGGGTBCGGGCCCBCTTS
T ss_pred HHHHhCCCEEEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCCccccCccCchhcCceECCCC
Confidence 9999999999999988888542 11 2222 22345676655 9999999999999987 467889999889
Q ss_pred cEEECCCCCcCCCCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCC---CCCCCCCcccccccceeeEE
Q psy2951 299 AVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK---TSLSTIPFFWTMLFGVGFRF 375 (1466)
Q Consensus 299 ~i~vd~~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~---~~~~~~p~~~s~~~~~~~~~ 375 (1466)
+|.||++++|+.|+|||+|||+... +..+..|..||+.+|.||++.. .++..+|+.+- ....+..
T Consensus 414 ~i~vd~~~~ts~~~VyA~GD~~~~~----------~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~~~--~~~~~a~ 481 (598)
T 2x8g_A 414 RVVCTDDEQTTVSNVYAIGDINAGK----------PQLTPVAIQAGRYLARRLFAGATELTDYSNVATTVF--TPLEYGA 481 (598)
T ss_dssp CBCCCTTSBCSSTTEEECGGGBTTS----------CCCHHHHHHHHHHHHHHHHHCCCCCCCCTTCCEEEC--SSSCEEE
T ss_pred cEEeCCCCcCCCCCEEEEeeecCCC----------CccHHHHHHhHHHHHHHHhcCCCcccCCCCCcEEEE--CCCceEE
Confidence 9999999999999999999996421 2456789999999999998653 24556664322 2233444
Q ss_pred EEeecC-------CceEEE-----e-------cccCCCeEEEEEEc---CCEEEEEEEECC--CHHHHHHHHHHhcCCCc
Q psy2951 376 AGYAAG-------HTQVDI-----V-------GDLEALKFTAYYSN---ADKVLAILTVGM--DPLAAQFAEQVLEFPYS 431 (1466)
Q Consensus 376 ~G~~~~-------~~~~~~-----~-------g~~~~~~~~~~~~~---~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~ 431 (1466)
+|.... ...+.. . +.....+|.+++.+ +++|+|++++|. +++++.++ .+|+++.+
T Consensus 482 vGl~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~~ilG~~~~g~~a~~~i~~~~-~ai~~~~t 560 (598)
T 2x8g_A 482 CGLSEEDAIEKYGDKDIEVYHSNFKPLEWTVAHREDNVCYMKLVCRKSDNMRVLGLHVLGPNAGEITQGYA-VAIKMGAT 560 (598)
T ss_dssp EECCHHHHHHHHCGGGEEEEEEEECCTHHHHTTCCSSCEEEEEEEETTTTTEEEEEEEESTTHHHHHHHHH-HHHHTTCB
T ss_pred EeCCHHHHHhhCCCCcEEEEEEeccchhHHhhcCCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHH-HHHHcCCC
Confidence 554321 111211 1 11124688888875 589999999998 45666666 99999987
Q ss_pred c-----ccccCcccchhh
Q psy2951 432 S-----LPHSHRCLGVVL 444 (1466)
Q Consensus 432 ~-----~~~~~p~~~e~~ 444 (1466)
. ++++|||++|.+
T Consensus 561 ~~~l~~~~~~hPt~~e~~ 578 (598)
T 2x8g_A 561 KADFDRTIGIHPTCSETF 578 (598)
T ss_dssp HHHHHHSCCCSSCSGGGG
T ss_pred HHHHhhccccCCCHHHHH
Confidence 6 799999999998
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-32 Score=332.21 Aligned_cols=341 Identities=17% Similarity=0.208 Sum_probs=251.0
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCc---------------------cchhcc-------cC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK---------------------LSKQLD-------IK 646 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~---------------------~~~~~~-------~~ 646 (1466)
.+||+||||||||++||..|+++|++ |+++|++. +++. +. ....++ .+
T Consensus 8 ~~DvvVIGgG~aGl~aA~~la~~G~~--V~liE~~~-~GGt-c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 83 (492)
T 3ic9_A 8 NVDVAIIGTGTAGMGAYRAAKKHTDK--VVLIEGGA-YGTT-CARVGCMPSKLLIAAADASYHASQTDLFGIQVDRISVN 83 (492)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTCSC--EEEEESSC-SSCH-HHHHSHHHHHHHHHHHHHHHHHTCGGGGTEECSEEEEC
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCc--EEEEeCCC-CCCc-ccccChhcCHHHHHHHHHHHHHhhhhhcCcCCCCCccC
Confidence 48999999999999999999999988 88888864 2211 10 000000 11
Q ss_pred cccccccCH-----------hHhhh-CCcEEEEceEEEEeccccccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCC-
Q psy2951 647 ADSILLRTE-----------EFYKD-NDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN- 713 (1466)
Q Consensus 647 ~~~~~~~~~-----------~~~~~-~gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~- 713 (1466)
..++..+.. ..+.. .+++++.++ .... +.+++.+.++.++.||+||||||++|+.|+++ +..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~-a~~~---~~~~v~~~~~~~~~~d~lViATGs~p~~p~~~-~~~~ 158 (492)
T 3ic9_A 84 GKAVMKRIQTERDRFVGFVVESVESFDEQDKIRGF-AKFL---DEHTLQVDDHSQVIAKRIVIATGSRPNYPEFL-AAAG 158 (492)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCGGGEEESC-EEEE---ETTEEEETTTEEEEEEEEEECCCEECCCCHHH-HTTG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCeeEEEEE-EEEe---cCCEEEEcCCcEEEeCEEEEccCCCCcCCCCC-CccC
Confidence 111112211 11222 245566666 4333 34577777788999999999999999999876 433
Q ss_pred -cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcE
Q psy2951 714 -KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVK 792 (1466)
Q Consensus 714 -~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~ 792 (1466)
.++ +..+...+ ...+++++|||+|++|+|+|..|++.|.+|+++++.++++ +.+++++.+.+.+.|++. |+
T Consensus 159 ~~v~---t~~~~~~~---~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l-~~~d~~~~~~l~~~l~~~-V~ 230 (492)
T 3ic9_A 159 SRLL---TNDNLFEL---NDLPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVA-NLQDEEMKRYAEKTFNEE-FY 230 (492)
T ss_dssp GGEE---CHHHHTTC---SSCCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCT-TCCCHHHHHHHHHHHHTT-SE
T ss_pred CcEE---cHHHHhhh---hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccc-ccCCHHHHHHHHHHHhhC-cE
Confidence 333 44444333 3348999999999999999999999999999999999876 578999999999999988 99
Q ss_pred EEccceEEEEEecCCCceEEEEC--CCC--cEEecCEEEEccccccCccc--cccCCceeeCCCcEEeC-CCCCCCCCCe
Q psy2951 793 FVMKANVSSFEKNEKNDVTAANL--DNG--TTIPADLVIVGIGTVLNTNY--LDGKGVELNGQKAVVVN-EYLETNVPGV 865 (1466)
Q Consensus 793 ~~~~~~v~~i~~~~~~~~~~v~~--~~g--~~i~~D~vi~a~G~~p~~~~--~~~~gl~~~~~G~i~vd-~~~~t~~~~i 865 (1466)
+++++++++++..+ +.+ .+.+ .+| +++++|.||+|+|++|++++ ++.+|++++++|+|.+| ++++|+.|+|
T Consensus 231 i~~~~~v~~i~~~~-~~v-~v~~~~~~G~~~~i~~D~Vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~~t~~~~I 308 (492)
T 3ic9_A 231 FDAKARVISTIEKE-DAV-EVIYFDKSGQKTTESFQYVLAATGRKANVDKLGLENTSIELDKKNSPLFDELTLQTSVDHI 308 (492)
T ss_dssp EETTCEEEEEEECS-SSE-EEEEECTTCCEEEEEESEEEECSCCEESCSSSCGGGSCCCBCTTCCBCCCTTTCBCSSTTE
T ss_pred EEECCEEEEEEEcC-CEE-EEEEEeCCCceEEEECCEEEEeeCCccCCCCCChhhcCCEECCCCCEeECcccccCCCCCE
Confidence 99999999998543 333 3444 366 68999999999999999988 78889999999999999 9999999999
Q ss_pred EEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCCc----CcccCeeeeeecCceeEEeeccCCCC------
Q psy2951 866 YAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS----LSTIPFFWTMLFGVGFRFAGYAAGHT------ 935 (1466)
Q Consensus 866 ya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~------ 935 (1466)
||+|||+..+. .++.|..||+.||.||++.... +..+| +..+++..+..+|+++...
T Consensus 309 yA~GD~~~~~~-----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p--~~~~~~p~~a~vGlte~~a~~~~g~ 375 (492)
T 3ic9_A 309 FVAGDANNTLT-----------LLHEAADDGKVAGTNAGAYPVIAQGQRRAPL--SVVFTEPQVASVGLSLRQIEDLYAD 375 (492)
T ss_dssp EECGGGGTSSC-----------SHHHHHHHHHHHHHHHHHTTSCCEECCCCCE--EEECSSSEEEEEESCHHHHHHHCSC
T ss_pred EEEEecCCCCc-----------cHHHHHHHHHHHHHHHcCCCCCcccCCCCCc--EEEECCCCeEEecCCHHHHHhccCc
Confidence 99999997654 3478999999999999973221 23333 2334567788888775210
Q ss_pred ----ceeE-ec----------ccccceEEEEEe--cCCeEEEEEeecCc
Q psy2951 936 ----QVDI-VG----------DLEALKFTAYYS--NADKVLAILTVGMD 967 (1466)
Q Consensus 936 ----~~~~-~~----------~~~~~~~~~~~~--~~~~i~g~~~~g~~ 967 (1466)
+... .. .-++..|+|+++ ++++++|++++|.+
T Consensus 376 ~~g~~~~~~~~~~~~~~~a~~~~~~~g~~kli~~~~~~~ilG~~~~g~~ 424 (492)
T 3ic9_A 376 QDAANYVVGQVSFEGQGRSRVMGKNKGLLNVYADRTSGEFLGAEMFGPA 424 (492)
T ss_dssp SSSCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETT
T ss_pred cCCccEEEEEEEeccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCC
Confidence 1111 00 113457899988 57999999999987
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.6e-31 Score=336.46 Aligned_cols=350 Identities=21% Similarity=0.268 Sum_probs=249.5
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCC--------CCCCCCc---cch-----------------hcc
Q psy2951 593 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENF--------LPYDRVK---LSK-----------------QLD 644 (1466)
Q Consensus 593 ~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~--------~~~~~~~---~~~-----------------~~~ 644 (1466)
...+||+||||||||++||..|+++|++ |+++|+... +++.... .+. .++
T Consensus 105 ~~~~dvvVIG~GpAGl~aA~~l~~~g~~--v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~~~~~~g 182 (598)
T 2x8g_A 105 KYDYDLIVIGGGSGGLAAGKEAAKYGAK--TAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHFG 182 (598)
T ss_dssp SSSEEEEEECCSHHHHHHHHHHHHTTCC--EEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccccEEEECCCccHHHHHHHHHhCCCe--EEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHHhhHHhCC
Confidence 4568999999999999999999999988 778886311 1110000 000 000
Q ss_pred ---------cCcccccccC-----------HhHhhhCCcEEEEceEEEEeccccccEEEccCC--CEEecCEEEEcCCCC
Q psy2951 645 ---------IKADSILLRT-----------EEFYKDNDIHVIKGKKIISDSELNEKKIKLQDG--TSIDFTKIYLATGSS 702 (1466)
Q Consensus 645 ---------~~~~~~~~~~-----------~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~--~~~~~d~lviAtG~~ 702 (1466)
.+..++..+. ...+...+|+++.+. +..+ +.....+...+| .++.||+||||||++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~-~~~~-~~~~v~v~~~~g~~~~~~~d~lviAtGs~ 260 (598)
T 2x8g_A 183 WSLDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAK-GRLI-SPHEVQITDKNQKVSTITGNKIILATGER 260 (598)
T ss_dssp CCCCGGGCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSE-EEEE-ETTEEEEECTTCCEEEEEEEEEEECCCEE
T ss_pred ccccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEE-EEEc-CCCEEEEEeCCCCeEEEEeCEEEEeCCCC
Confidence 0111111111 122456799998876 5566 555555555556 469999999999999
Q ss_pred CCcCCCCCCCC-cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHH
Q psy2951 703 PRTISQADGVN-KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGER 781 (1466)
Q Consensus 703 ~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~ 781 (1466)
|+.|++| |.+ ... +..+... ....+++|+|||+|++|+|+|..|+++|.+||++++. . +.+.+++++.+.
T Consensus 261 p~~p~i~-G~~~~~~---~~~~~~~---~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~-~l~~~d~~~~~~ 331 (598)
T 2x8g_A 261 PKYPEIP-GAVEYGI---TSDDLFS---LPYFPGKTLVIGASYVALECAGFLASLGGDVTVMVRS-I-LLRGFDQQMAEK 331 (598)
T ss_dssp ECCCSST-THHHHCE---EHHHHTT---CSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-C-SSTTSCHHHHHH
T ss_pred CCCCCCC-CcccceE---cHHHHhh---CccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC-c-CcCcCCHHHHHH
Confidence 9999999 865 222 2333322 2235789999999999999999999999999999998 3 346688999999
Q ss_pred HHHHHHhcCcEEEccceEEEEEec-----CC---Cce-EEEECCCCcEEe--cCEEEEccccccCccc--cccCCceeeC
Q psy2951 782 ITKLFESKGVKFVMKANVSSFEKN-----EK---NDV-TAANLDNGTTIP--ADLVIVGIGTVLNTNY--LDGKGVELNG 848 (1466)
Q Consensus 782 ~~~~l~~~gv~~~~~~~v~~i~~~-----~~---~~~-~~v~~~~g~~i~--~D~vi~a~G~~p~~~~--~~~~gl~~~~ 848 (1466)
+.+.++++||+++++..++++... ++ +.+ ..+.+.+|++++ +|.||+|+|++|++++ ++..|+++++
T Consensus 332 ~~~~l~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~~~~~gl~~~~ 411 (598)
T 2x8g_A 332 VGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGVKLDK 411 (598)
T ss_dssp HHHHHHHTTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCEEECGGGTBCGGGCCCBCT
T ss_pred HHHHHHhCCCEEEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCCccccCccCchhcCceECC
Confidence 999999999999999988888532 11 322 223346776655 9999999999999986 5778999999
Q ss_pred CCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCC---cCcccCeeeeeecCcee
Q psy2951 849 QKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT---SLSTIPFFWTMLFGVGF 925 (1466)
Q Consensus 849 ~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~---~~~~~~~~~~~~~~~~~ 925 (1466)
+|+|.||++++|+.|+|||+|||+.... ..++.|..||+.||.+|++... .+..+|++. +++..+
T Consensus 412 ~G~i~vd~~~~ts~~~VyA~GD~~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~~--~~~~~~ 479 (598)
T 2x8g_A 412 NGRVVCTDDEQTTVSNVYAIGDINAGKP----------QLTPVAIQAGRYLARRLFAGATELTDYSNVATTV--FTPLEY 479 (598)
T ss_dssp TSCBCCCTTSBCSSTTEEECGGGBTTSC----------CCHHHHHHHHHHHHHHHHHCCCCCCCCTTCCEEE--CSSSCE
T ss_pred CCcEEeCCCCcCCCCCEEEEeeecCCCC----------ccHHHHHHhHHHHHHHHhcCCCcccCCCCCcEEE--ECCCce
Confidence 9999999999999999999999964321 2457899999999999997543 355566433 556667
Q ss_pred EEeeccCCC-------CceeEe------------cccccceEEEEEec---CCeEEEEEeecCc
Q psy2951 926 RFAGYAAGH-------TQVDIV------------GDLEALKFTAYYSN---ADKVLAILTVGMD 967 (1466)
Q Consensus 926 ~~~g~~~~~-------~~~~~~------------~~~~~~~~~~~~~~---~~~i~g~~~~g~~ 967 (1466)
..+|+++.. ...... .......|.|++++ +++++|++++|..
T Consensus 480 a~vGl~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~~ilG~~~~g~~ 543 (598)
T 2x8g_A 480 GACGLSEEDAIEKYGDKDIEVYHSNFKPLEWTVAHREDNVCYMKLVCRKSDNMRVLGLHVLGPN 543 (598)
T ss_dssp EEEECCHHHHHHHHCGGGEEEEEEEECCTHHHHTTCCSSCEEEEEEEETTTTTEEEEEEEESTT
T ss_pred EEEeCCHHHHHhhCCCCcEEEEEEeccchhHHhhcCCCCcEEEEEEEecCCCCEEEEEEEECCC
Confidence 778876421 011110 00124568898883 6999999999986
|
| >3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=3.7e-32 Score=329.06 Aligned_cols=298 Identities=17% Similarity=0.209 Sum_probs=230.4
Q ss_pred CcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhc--cCcccccccChhhhccCCcEEEcCCeEEE
Q psy2951 1067 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD--IKADSILLRTEEFYKDNDIHVIKGKKIIS 1144 (1466)
Q Consensus 1067 ~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 1144 (1466)
++|||||||+||++||..|++.+.+.+|||||+++++.|. |.+..... .+.+++..+..+++++.+|+++.++ |+.
T Consensus 3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~-p~l~~v~~g~~~~~~i~~~~~~~~~~~gv~~i~~~-v~~ 80 (430)
T 3hyw_A 3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFT-PAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINEK-AES 80 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECG-GGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECSC-EEE
T ss_pred CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccC-ccHHHHhcCCCCHHHhhhcHHHHHHHCCcEEEEeE-EEE
Confidence 5799999999999999999998877899999999998884 44433322 4566666677788888899999886 999
Q ss_pred eecCCCCeEEecCCcEEecCeEEEecCCCCCcCCCCCCCC-cEEEecCHHHHHhhhcccC---CCCeEEEEcCCH-----
Q psy2951 1145 DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-KVFYLRTVEDANNIAPHIT---PESNVVVIGSSF----- 1215 (1466)
Q Consensus 1145 i~d~~~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~-~v~~~~~~~~~~~l~~~~~---~~~~vvVvG~g~----- 1215 (1466)
| |+++++|++++|++++||+||||||+++. +++| |.+ +.+.+++.+++.++++.+. .++.++|+|++.
T Consensus 81 I-d~~~~~V~~~~g~~i~YD~LViAtG~~~~-~~i~-G~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~vv~gg~~gve~~ 157 (430)
T 3hyw_A 81 I-DPDANTVTTQSGKKIEYDYLVIATGPKLV-FGAE-GQEENSTSICTAEHALETQKKLQELYANPGPVVIGAIPGVSCF 157 (430)
T ss_dssp E-ETTTTEEEETTCCEEECSEEEECCCCEEE-CCSB-THHHHSCCCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCC
T ss_pred E-ECCCCEEEECCCCEEECCEEEEeCCCCcc-CCcc-CcccCcCCcccHHHHHHHHHHHHhhccCCceEEEeCCCcEEEh
Confidence 9 99999999999999999999999999865 4688 876 6777889999988877653 355566666542
Q ss_pred -----HHHHHHHHHhcCC----CeEEEEcCCCcC--CcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEE
Q psy2951 1216 -----IGMEAAAFCASKV----KSVTVVGRGAVP--FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAA 1284 (1466)
Q Consensus 1216 -----~g~e~a~~l~~~g----~~v~vv~~~~~~--~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v 1284 (1466)
.++.++..+++++ .+|++++..+.. +.....+...+.+.+.++++||++++++.|++++ .+ + ..+
T Consensus 158 ~~~~e~a~~~~~~l~~~g~~~~v~v~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~GV~~~~~~~v~~v~--~~-~-~~~ 233 (430)
T 3hyw_A 158 GPAYEFALMLHYELKKRGIRYKVPMTFITSEPYLGHFGVGGIGASKRLVEDLFAERNIDWIANVAVKAIE--PD-K-VIY 233 (430)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGCCEEEECSSSSTTCTTTTCSTTHHHHHHHHHHHTTCEEECSCEEEEEC--SS-E-EEE
T ss_pred HHHHHHHHHHHHHHHHhcccccceeeeecccchhhhccchhhHHHHHHHHHHHHhCCeEEEeCceEEEEe--CC-c-eEE
Confidence 2334445566665 478998877644 2234456778889999999999999999999997 22 2 224
Q ss_pred EcCCC--CeeecCEEEEeeccccCccccccCC--ceeeCCCeEEeCCCcc-ccCCCEEEecccccCCCccCCCcee---e
Q psy2951 1285 NLDNG--TTIPADLVIVGIGTVLNTNYLDGKG--VELNGQKAVVVNEYLE-TNVPGVYAGGDIAYAPLHSFYNKNA---S 1356 (1466)
Q Consensus 1285 ~l~~g--~~i~~D~vv~a~G~~p~~~~~~~~g--l~~~~~G~i~vd~~~~-t~~~~v~a~GD~a~~p~~~~~~~~~---~ 1356 (1466)
...+| +++++|++++++|..|+ +++..++ +..+.+|++.||++|| |++|||||+|||+..|... +.+. .
T Consensus 234 ~~~~g~~~~i~~d~vi~~~G~~~~-~~~~~~~~~l~~~~~g~i~vd~~lq~t~~~~IfAiGD~a~~p~~~--~~~~~~~~ 310 (430)
T 3hyw_A 234 EDLNGNTHEVPAKFTMFMPSFQGP-EVVASAGDKVANPANKMVIVNRCFQNPTYKNIFGVGVVTAIPPIE--KTPIPTGV 310 (430)
T ss_dssp ECTTSCEEEEECSEEEEECEEECC-HHHHTTCTTTBCTTTCCBCCCTTSBCSSSTTEEECSTTBCCCCSS--CCSSCCCC
T ss_pred EeeCCCceEeecceEEEeccCCCc-hHHHhcccccccCCceEEEecccccCCCCCCEEEeccEEecCCcc--cCcCcCcc
Confidence 44444 57999999999999998 5666555 4445567799999999 7899999999999988642 2111 1
Q ss_pred eecHHHHHHHHHHHHHHhcC
Q psy2951 1357 IGHYQLAQYHGRIAALNMVE 1376 (1466)
Q Consensus 1357 ~~~~~~A~~qa~~aa~~i~g 1376 (1466)
....+.|.+||+++|+||+.
T Consensus 311 pk~a~~A~~qg~~~A~Ni~~ 330 (430)
T 3hyw_A 311 PKTGMMIEQMAMAVAHNIVN 330 (430)
T ss_dssp CCCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 23457899999999999995
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-31 Score=316.80 Aligned_cols=300 Identities=21% Similarity=0.295 Sum_probs=225.2
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCC------------CCCCCchhhccCcccccccChhhhccCC
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY------------DRVKLSKQLDIKADSILLRTEEFYKDND 1133 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 1133 (1466)
+++|+|||||+||+++|..|++.|+ +|+|||+++.++. +.+.+.. .....+.....+.+.+.+
T Consensus 14 ~~dvvIIG~G~aGl~aA~~l~~~g~--~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~ 88 (360)
T 3ab1_A 14 MRDLTIIGGGPTGIFAAFQCGMNNI--SCRIIESMPQLGGQLAALYPEKHIYDVAGFPE---VPAIDLVESLWAQAERYN 88 (360)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTC--CEEEECSSSSSCHHHHHTCTTSEECCSTTCSS---EEHHHHHHHHHHHHHTTC
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCC--CEEEEecCCCCCCcccccCCCcccccCCCCCC---CCHHHHHHHHHHHHHHhC
Confidence 5789999999999999999999998 9999999875431 1111110 011111112223455678
Q ss_pred cEEEcCCeEEEeecCCCC---eEEecCCcEEecCeEEEecCC---CCCcCCCCCC-CC-----cEEE-ecCHHHHHhhhc
Q psy2951 1134 IHVIKGKKIISDSELNEK---KIKLQDGTSIDFTKIYLATGS---SPRTISQADG-VN-----KVFY-LRTVEDANNIAP 1200 (1466)
Q Consensus 1134 v~~~~~~~v~~i~d~~~~---~v~~~~g~~~~yd~lvlAtG~---~~~~~~~~~g-~~-----~v~~-~~~~~~~~~l~~ 1200 (1466)
++++.+++|+.+ +...+ .|.+.+|.++.||+||+|||+ .|+.++++ | .+ ++++ +++.++ +
T Consensus 89 ~~~~~~~~v~~i-~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~~~~~~~~i~-g~~~~~~~~~v~~~~~~~~~---~-- 161 (360)
T 3ab1_A 89 PDVVLNETVTKY-TKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQL-GNIDHLTGSSVYYAVKSVED---F-- 161 (360)
T ss_dssp CEEECSCCEEEE-EECTTSCEEEEETTSCEEEEEEEEECCTTCSCCBCCCGGG-CCCTTTBTTTEESSCSCGGG---G--
T ss_pred CEEEcCCEEEEE-EECCCceEEEEECCCcEEEeeEEEEccCCCcCCCCCCCCC-CchhhCcCceEEEecCCHHH---c--
Confidence 999999999999 86543 688888889999999999999 67777777 7 43 2433 222211 1
Q ss_pred ccCCCCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCc
Q psy2951 1201 HITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKND 1280 (1466)
Q Consensus 1201 ~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~ 1280 (1466)
.+++|+|||+|.+|+|+|..|++.+.+|+++++.+.++. .+...+.+.+.+++.||++++++++++++ .++++
T Consensus 162 ---~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~---~~~~~~~l~~~~~~~gv~i~~~~~v~~i~-~~~~~ 234 (360)
T 3ab1_A 162 ---KGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQG---HGKTAHEVERARANGTIDVYLETEVASIE-ESNGV 234 (360)
T ss_dssp ---TTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSS---CSHHHHSSHHHHHHTSEEEESSEEEEEEE-EETTE
T ss_pred ---CCCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCC---CHHHHHHHHHHhhcCceEEEcCcCHHHhc-cCCCc
Confidence 378999999999999999999999999999999876553 24566778888899999999999999998 44556
Q ss_pred EEEEEcC--CC--CeeecCEEEEeeccccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceee
Q psy2951 1281 VTAANLD--NG--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNAS 1356 (1466)
Q Consensus 1281 ~~~v~l~--~g--~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~ 1356 (1466)
+..|.+. +| +++++|.||+++|..|++++++..++.++ +|+|.||++++|+.|+|||+|||+..+..
T Consensus 235 v~~v~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~-~g~i~vd~~~~t~~~~vya~GD~~~~~~~-------- 305 (360)
T 3ab1_A 235 LTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLARWDLELY-ENALVVDSHMKTSVDGLYAAGDIAYYPGK-------- 305 (360)
T ss_dssp EEEEEEEETTCCEEEEECSEEEECCCBCCSCGGGGGSSCCEE-TTEEECCTTSBCSSTTEEECSTTEECTTC--------
T ss_pred eEEEEEEecCCCeEEEeCCEEEECCCCCCCHHHHHhhccccc-cCeeeecCCCcCCCCCEEEecCccCCCCc--------
Confidence 6567664 77 57899999999999999999999999888 68999999999999999999999987532
Q ss_pred eecHHHHHHHHHHHHHHhcCCCCCCCC-Cccceecccc
Q psy2951 1357 IGHYQLAQYHGRIAALNMVEKKTSLST-IPFFWTMLFG 1393 (1466)
Q Consensus 1357 ~~~~~~A~~qa~~aa~~i~g~~~~~~~-~p~~w~~~~~ 1393 (1466)
...+..|..||+.||.||++...+... .|+|||.++.
T Consensus 306 ~~~~~~A~~~g~~aa~~i~~~l~~~~~~~~~~~~~~~~ 343 (360)
T 3ab1_A 306 LKIIQTGLSEATMAVRHSLSYIKPGEKIRNVFSSVKMA 343 (360)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHSCC-------------
T ss_pred cceeehhHHHHHHHHHHHHhhcCCccccCceeccchhh
Confidence 235689999999999999975444444 3555666443
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-31 Score=312.51 Aligned_cols=296 Identities=18% Similarity=0.226 Sum_probs=229.9
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCC------------CCCCCchhhccCcccccccChhhhccCC
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY------------DRVKLSKQLDIKADSILLRTEEFYKDND 1133 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 1133 (1466)
+++|+|||||+||+++|..|++.|. +|+|||+++.++. +.+.+.. .....+.....+.+++.+
T Consensus 5 ~~~vvIIG~G~aGl~aA~~l~~~g~--~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~ 79 (335)
T 2zbw_A 5 HTDVLIVGAGPTGLFAGFYVGMRGL--SFRFVDPLPEPGGQLTALYPEKYIYDVAGFPK---VYAKDLVKGLVEQVAPFN 79 (335)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTC--CEEEEESSSSSCHHHHHTCTTSEECCSTTCSS---EEHHHHHHHHHHHHGGGC
T ss_pred cCcEEEECCCHHHHHHHHHHHhCCC--CEEEEeCCCCCCCeeeccCCCceeeccCCCCC---CCHHHHHHHHHHHHHHcC
Confidence 4689999999999999999999998 9999999875431 1111100 011112112223455668
Q ss_pred cEEEcCCeEEEeecCCC--CeEEecCCcEEecCeEEEecCC---CCCcCCCCCCCC-----cEEE-ecCHHHHHhhhccc
Q psy2951 1134 IHVIKGKKIISDSELNE--KKIKLQDGTSIDFTKIYLATGS---SPRTISQADGVN-----KVFY-LRTVEDANNIAPHI 1202 (1466)
Q Consensus 1134 v~~~~~~~v~~i~d~~~--~~v~~~~g~~~~yd~lvlAtG~---~~~~~~~~~g~~-----~v~~-~~~~~~~~~l~~~~ 1202 (1466)
++++.+++|..+ +... ..|.+.++.++.||+||+|||+ .|+.++++ |.+ ++++ +++.++ +
T Consensus 80 ~~~~~~~~v~~i-~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~p~~~~i~-g~~~~~~~~~~~~~~~~~~---~---- 150 (335)
T 2zbw_A 80 PVYSLGERAETL-EREGDLFKVTTSQGNAYTAKAVIIAAGVGAFEPRRIGAP-GEREFEGRGVYYAVKSKAE---F---- 150 (335)
T ss_dssp CEEEESCCEEEE-EEETTEEEEEETTSCEEEEEEEEECCTTSEEEECCCCCT-TTTTTBTTTEESSCSCGGG---G----
T ss_pred CEEEeCCEEEEE-EECCCEEEEEECCCCEEEeCEEEECCCCCCCCCCCCCCC-ChhhccCcEEEEecCchhh---c----
Confidence 999999999999 7654 3577778888999999999999 57777777 764 2432 222211 1
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEE
Q psy2951 1203 TPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVT 1282 (1466)
Q Consensus 1203 ~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~ 1282 (1466)
.+++|+|||+|.+|+|+|..|++.|.+|+++++.+.++. .+...+.+.+.+++.||++++++++++++ . ++++.
T Consensus 151 -~~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~---~~~~~~~l~~~l~~~gv~v~~~~~v~~i~-~-~~~~~ 224 (335)
T 2zbw_A 151 -QGKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRA---HEASVKELMKAHEEGRLEVLTPYELRRVE-G-DERVR 224 (335)
T ss_dssp -TTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCS---CHHHHHHHHHHHHTTSSEEETTEEEEEEE-E-SSSEE
T ss_pred -CCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCc---cHHHHHHHHhccccCCeEEecCCcceeEc-c-CCCee
Confidence 378999999999999999999999999999999886553 35677888888999999999999999998 3 45655
Q ss_pred EEEcC---CC--CeeecCEEEEeeccccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeee
Q psy2951 1283 AANLD---NG--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASI 1357 (1466)
Q Consensus 1283 ~v~l~---~g--~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~ 1357 (1466)
.|.+. +| +++++|.||+++|..|++++++..++..+ +|++.||++++|+.|+|||+|||+..+.. .
T Consensus 225 ~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~-~g~i~vd~~~~t~~~~vya~GD~~~~~~~--------~ 295 (335)
T 2zbw_A 225 WAVVFHNQTQEELALEVDAVLILAGYITKLGPLANWGLALE-KNKIKVDTTMATSIPGVYACGDIVTYPGK--------L 295 (335)
T ss_dssp EEEEEETTTCCEEEEECSEEEECCCEEEECGGGGGSCCCEE-TTEEECCTTCBCSSTTEEECSTTEECTTC--------C
T ss_pred EEEEEECCCCceEEEecCEEEEeecCCCCchHhhhcceecc-CCeeeeCCCCCCCCCCEEEeccccccCcc--------h
Confidence 67765 77 67999999999999999999999999888 68899999999999999999999987542 2
Q ss_pred ecHHHHHHHHHHHHHHhcCCCCCCCCCccceec
Q psy2951 1358 GHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTM 1390 (1466)
Q Consensus 1358 ~~~~~A~~qa~~aa~~i~g~~~~~~~~p~~w~~ 1390 (1466)
..+..|..||+.||.||++...+....|+-|+.
T Consensus 296 ~~~~~A~~~g~~aa~~i~~~l~~~~~~~~~~~~ 328 (335)
T 2zbw_A 296 PLIVLGFGEAAIAANHAAAYANPALKVNPGHSS 328 (335)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCTTSCSSCCCGG
T ss_pred hhhhhhHHHHHHHHHHHHHHhhhhhccCCcccc
Confidence 356899999999999999765555555555554
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.4e-32 Score=310.95 Aligned_cols=285 Identities=13% Similarity=0.156 Sum_probs=208.1
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCC---CccchhcccCcccccccCHhHhhhC-CcEEEEce
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR---VKLSKQLDIKADSILLRTEEFYKDN-DIHVIKGK 669 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-gv~~~~~~ 669 (1466)
+.+||+|||||||||+||.+|+++|++ |+++|++...+... +.+.......+.++.....+.+.++ ++.++.++
T Consensus 5 ~~yDVvIIGaGpAGlsAA~~lar~g~~--v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (304)
T 4fk1_A 5 KYIDCAVIGAGPAGLNASLVLGRARKQ--IALFDNNTNRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYYEKT 82 (304)
T ss_dssp -CEEEEEECCSHHHHHHHHHHHHTTCC--EEEEECSCCGGGGSSCBCCSTTCTTBCHHHHHHHHHHHHTTSTTEEEEECC
T ss_pred CCcCEEEECCCHHHHHHHHHHHHCCCC--EEEEeCCCCCCeeeeecCCccCCCCCCHHHHHHHHHHHHHhcCCEEEEeeE
Confidence 458999999999999999999999998 77888764211100 0011111123334444444445555 56666665
Q ss_pred EEEEec--cccccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCCh-HH
Q psy2951 670 KIISDS--ELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSF-IG 746 (1466)
Q Consensus 670 ~v~~i~--~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~-~g 746 (1466)
+..+. +...+++.+.+++++.||+||||||++|+.|++| |.+.. ..+.+..+..+.....++++++|||||. .+
T Consensus 83 -~~~~~~~~~~~~~v~~~~g~~~~a~~liiATGs~p~~p~i~-G~~~~-~~~~v~~~~~~~~~~~~~~~~~VIggG~~~~ 159 (304)
T 4fk1_A 83 -VVMITKQSTGLFEIVTKDHTKYLAERVLLATGMQEEFPSIP-NVREY-YGKSLFSCPYCDGWELKDQPLIIISENEDHT 159 (304)
T ss_dssp -EEEEEECTTSCEEEEETTCCEEEEEEEEECCCCEEECCSCT-THHHH-BTTTEESCHHHHSGGGTTSCEEEECCSHHHH
T ss_pred -EEEeeecCCCcEEEEECCCCEEEeCEEEEccCCcccccccc-Ccccc-ccceeeeccccchhHhcCCceeeecCCCchh
Confidence 44442 3335678888999999999999999999999999 86511 0001111111222233578888888886 56
Q ss_pred HHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEE
Q psy2951 747 MEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLV 826 (1466)
Q Consensus 747 ~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~v 826 (1466)
+|+|..+++.+.+|+++.+.+... +.+.+.|+++|++++.+. +..+. .+++.+..+.+++|+++++|.+
T Consensus 160 ~e~a~~~~~~~~~v~i~~~~~~~~---------~~~~~~l~~~g~~~~~~~-v~~~~-~~~~~~~~v~~~~g~~i~~~~~ 228 (304)
T 4fk1_A 160 LHMTKLVYNWSTDLVIATNGNELS---------QTIMDELSNKNIPVITES-IRTLQ-GEGGYLKKVEFHSGLRIERAGG 228 (304)
T ss_dssp HHHHHHHTTTCSCEEEECSSCCCC---------HHHHHHHHTTTCCEECSC-EEEEE-SGGGCCCEEEETTSCEECCCEE
T ss_pred hhHHHHHHhCCceEEEEeccccch---------hhhhhhhhccceeEeeee-EEEee-cCCCeeeeeeccccceeeecce
Confidence 899999999999999998876432 234567888999999764 77777 4556677899999999999999
Q ss_pred EEccccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhc
Q psy2951 827 IVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMV 904 (1466)
Q Consensus 827 i~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~ 904 (1466)
++++|.+|++.+++++|++++++|+|.||+++|||.|+|||+|||+..+.. .+..|+.||+.||..|.
T Consensus 229 vi~~g~~~~~~~~~~~g~~~~~~G~I~vd~~~~Ts~p~IyA~GDv~~~~~~----------~~~~A~~~G~~AA~~i~ 296 (304)
T 4fk1_A 229 FIVPTFFRPNQFIEQLGCELQSNGTFVIDDFGRTSEKNIYLAGETTTQGPS----------SLIIAASQGNKAAIAIN 296 (304)
T ss_dssp EECCEEECSSCHHHHTTCCCCTTSSSCSSTTCBCSSTTEEECSHHHHTSCC----------CHHHHHHHHHHHHHHHH
T ss_pred eeeeccccCChhhhhcCeEECCCCCEEECcCCccCCCCEEEEeccCCCcch----------HHHHHHHHHHHHHHHHH
Confidence 999988888888999999999999999999999999999999999975432 24689999999998874
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-31 Score=312.59 Aligned_cols=294 Identities=18% Similarity=0.221 Sum_probs=225.0
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCc------cchh---cccCcccccccCHhHhhhCCcEE
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK------LSKQ---LDIKADSILLRTEEFYKDNDIHV 665 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~------~~~~---~~~~~~~~~~~~~~~~~~~gv~~ 665 (1466)
+++|+|||||+||+++|+.|++.|++ |+++|+.+.+++.... +... ......++..++.+.+.+.++++
T Consensus 5 ~~~vvIIG~G~aGl~aA~~l~~~g~~--v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 82 (335)
T 2zbw_A 5 HTDVLIVGAGPTGLFAGFYVGMRGLS--FRFVDPLPEPGGQLTALYPEKYIYDVAGFPKVYAKDLVKGLVEQVAPFNPVY 82 (335)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCC--EEEEESSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHGGGCCEE
T ss_pred cCcEEEECCCHHHHHHHHHHHhCCCC--EEEEeCCCCCCCeeeccCCCceeeccCCCCCCCHHHHHHHHHHHHHHcCCEE
Confidence 57999999999999999999999987 8888887654321100 0000 00122344555566677789999
Q ss_pred EEceEEEEecccc--ccEEEccCCCEEecCEEEEcCCC---CCCcCCCCCCCCc-----EEEecCHHHHHhhcccCCCCC
Q psy2951 666 IKGKKIISDSELN--EKKIKLQDGTSIDFTKIYLATGS---SPRTISQADGVNK-----VFYLRTVEDANNIAPHITPES 735 (1466)
Q Consensus 666 ~~~~~v~~i~~~~--~~~v~~~~~~~~~~d~lviAtG~---~~~~~~~~~g~~~-----~~~~~~~~~~~~~~~~~~~~~ 735 (1466)
+.+++|..+ +.. ...+.+.++.++.||+||+|||+ .|..|+++ |.+. +++ .+.+. . ...++
T Consensus 83 ~~~~~v~~i-~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~p~~~~i~-g~~~~~~~~~~~--~~~~~---~--~~~~~ 153 (335)
T 2zbw_A 83 SLGERAETL-EREGDLFKVTTSQGNAYTAKAVIIAAGVGAFEPRRIGAP-GEREFEGRGVYY--AVKSK---A--EFQGK 153 (335)
T ss_dssp EESCCEEEE-EEETTEEEEEETTSCEEEEEEEEECCTTSEEEECCCCCT-TTTTTBTTTEES--SCSCG---G--GGTTC
T ss_pred EeCCEEEEE-EECCCEEEEEECCCCEEEeCEEEECCCCCCCCCCCCCCC-ChhhccCcEEEE--ecCch---h--hcCCC
Confidence 999889888 443 34577777788999999999998 57777777 7541 221 11111 1 11489
Q ss_pred cEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEEC
Q psy2951 736 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANL 815 (1466)
Q Consensus 736 ~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~ 815 (1466)
+|+|||+|++|+|+|..|++.+.+|+++++.+.+.. .++..+.+.+.+++.||++++++.+.+++. ++++..+.+
T Consensus 154 ~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~---~~~~~~~l~~~l~~~gv~v~~~~~v~~i~~--~~~~~~v~~ 228 (335)
T 2zbw_A 154 RVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRA---HEASVKELMKAHEEGRLEVLTPYELRRVEG--DERVRWAVV 228 (335)
T ss_dssp EEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCS---CHHHHHHHHHHHHTTSSEEETTEEEEEEEE--SSSEEEEEE
T ss_pred EEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCc---cHHHHHHHHhccccCCeEEecCCcceeEcc--CCCeeEEEE
Confidence 999999999999999999999999999999886542 356777888889999999999999999985 344445555
Q ss_pred C---CC--cEEecCEEEEccccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHH
Q psy2951 816 D---NG--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQ 890 (1466)
Q Consensus 816 ~---~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~ 890 (1466)
. +| +++++|.||+|+|++|++++++.++++++ +|++.+|++++|+.|+|||+|||+..+.. +..+.
T Consensus 229 ~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~-~g~i~vd~~~~t~~~~vya~GD~~~~~~~--------~~~~~ 299 (335)
T 2zbw_A 229 FHNQTQEELALEVDAVLILAGYITKLGPLANWGLALE-KNKIKVDTTMATSIPGVYACGDIVTYPGK--------LPLIV 299 (335)
T ss_dssp EETTTCCEEEEECSEEEECCCEEEECGGGGGSCCCEE-TTEEECCTTCBCSSTTEEECSTTEECTTC--------CCCHH
T ss_pred EECCCCceEEEecCEEEEeecCCCCchHhhhcceecc-CCeeeeCCCCCCCCCCEEEeccccccCcc--------hhhhh
Confidence 4 66 58999999999999999999999999887 68999999999999999999999976532 13568
Q ss_pred HHHHHHHHHHHHhccCCCcCccc
Q psy2951 891 LAQYHGRIAALNMVEKKTSLSTI 913 (1466)
Q Consensus 891 ~A~~~g~~aA~~i~~~~~~~~~~ 913 (1466)
.|..||+.+|.+|++........
T Consensus 300 ~A~~~g~~aa~~i~~~l~~~~~~ 322 (335)
T 2zbw_A 300 LGFGEAAIAANHAAAYANPALKV 322 (335)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSCS
T ss_pred hhHHHHHHHHHHHHHHhhhhhcc
Confidence 89999999999998654333333
|
| >4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-31 Score=309.09 Aligned_cols=283 Identities=20% Similarity=0.233 Sum_probs=208.3
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCcc-------chhcccCcccccccCHhHhhhCCcEEE
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKL-------SKQLDIKADSILLRTEEFYKDNDIHVI 666 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~gv~~~ 666 (1466)
..+||+||||||||++||.+|+++|++ |+++|+.. ++..+.. .........++..+......+.+..+.
T Consensus 5 ~~yDvvIIG~GpAGl~aA~~l~~~g~~--V~liE~~~--~gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (312)
T 4gcm_A 5 IDFDIAIIGAGPAGMTAAVYASRANLK--TVMIERGI--PGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQ 80 (312)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCC--EEEEESSC--TTGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHHHTTCEEE
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCC--EEEEecCC--CCCeeecccccCCcCCccccchHHHHHHHHHHHhhcccccc
Confidence 368999999999999999999999998 77777753 1111111 100112233444555566677788888
Q ss_pred EceEEEEeccccccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCC-----cEEEecCHHHHHhhcccCCCCCcEEEEC
Q psy2951 667 KGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-----KVFYLRTVEDANNIAPHITPESNVVVIG 741 (1466)
Q Consensus 667 ~~~~v~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~vvVvG 741 (1466)
.+..+... +.........++++++||+||||||++|+.|++| |.+ .+.+. .. +.....++|+|+|||
T Consensus 81 ~~~~~~~~-~~~~~~~~~~~~~~~~~d~liiAtGs~~~~~~ip-G~~~~~~~~v~~~---~~---~~~~~~~~k~vvViG 152 (312)
T 4gcm_A 81 YGDIKSVE-DKGEYKVINFGNKELTAKAVIIATGAEYKKIGVP-GEQELGGRGVSYC---AV---CDGAFFKNKRLFVIG 152 (312)
T ss_dssp ECCCCEEE-ECSSCEEEECSSCEEEEEEEEECCCEEECCCCCT-TTTTTBTTTEESC---HH---HHGGGGTTCEEEEEC
T ss_pred ceeeeeee-eeecceeeccCCeEEEeceeEEcccCccCcCCCC-ChhhhCCccEEee---ec---cCccccCCCEEEEEC
Confidence 77755555 5555666667788999999999999999999999 866 22221 11 122233589999999
Q ss_pred CChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCC--ceEEEEC--CC
Q psy2951 742 SSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKN--DVTAANL--DN 817 (1466)
Q Consensus 742 ~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~--~~~~v~~--~~ 817 (1466)
+|++|+|+|..|++.|.+||++++.++++... ....+.+++.++.+.....+..+...+.. ....... .+
T Consensus 153 gG~ig~E~A~~l~~~g~~Vtlv~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (312)
T 4gcm_A 153 GGDSAVEEGTFLTKFADKVTIVHRRDELRAQR------ILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGS 226 (312)
T ss_dssp CSHHHHHHHHHHTTTCSEEEEECSSSSCCSCH------HHHHHHHHCTTEEEECSEEEEEEEEETTEEEEEEEEETTTCC
T ss_pred CCHHHHHHHHHHHhcCCEEEEEecccccCcch------hHHHHHHHhcCcceeeecceeeeeccccccccceeeeecCCc
Confidence 99999999999999999999999998765321 12245667888998888777766532221 1112222 33
Q ss_pred CcEEecCEEEEccccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHH
Q psy2951 818 GTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGR 897 (1466)
Q Consensus 818 g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~ 897 (1466)
+..+++|.|++++|..|+..+++..++. +++|+|.||+++|||+|+|||+|||+..+.. ++..|+.||+
T Consensus 227 ~~~~~~d~v~~~~g~~~~~~~~~~~g~~-~~~G~I~vd~~~~Ts~pgIyA~GDv~~~~~~----------~~~~A~~~G~ 295 (312)
T 4gcm_A 227 EETHEADGVFIYIGMKPLTAPFKDLGIT-NDVGYIVTKDDMTTSVPGIFAAGDVRDKGLR----------QIVTATGDGS 295 (312)
T ss_dssp EEEEECSEEEECSCEEESCGGGGGGTCB-CTTSCBCCCTTSBCSSTTEEECSTTBSCSCC----------SHHHHHHHHH
T ss_pred eeEEeeeeEEeecCCCcCchhHHhccee-cCCCeEeeCCCCccCCCCEEEEeecCCCcch----------HHHHHHHHHH
Confidence 4579999999999999999999888874 5678999999999999999999999864321 3468999999
Q ss_pred HHHHHhcc
Q psy2951 898 IAALNMVE 905 (1466)
Q Consensus 898 ~aA~~i~~ 905 (1466)
.||.+|..
T Consensus 296 ~AA~~i~~ 303 (312)
T 4gcm_A 296 IAAQSAAE 303 (312)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999863
|
| >4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.9e-31 Score=306.95 Aligned_cols=287 Identities=16% Similarity=0.210 Sum_probs=209.5
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCC---CCCCCccchh------c--ccCcccccccCHhHhhhCC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFL---PYDRVKLSKQ------L--DIKADSILLRTEEFYKDND 662 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~---~~~~~~~~~~------~--~~~~~~~~~~~~~~~~~~g 662 (1466)
..+||+|||||||||+||..|+++|++ |+++|++... ++........ + ..+..++..+..+.+.+.+
T Consensus 3 ~~yDvvIIG~GpAGl~AA~~la~~g~~--v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~~~~~~~~~~ 80 (314)
T 4a5l_A 3 NIHDVVIIGSGPAAHTAAIYLGRSSLK--PVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEKYG 80 (314)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCC--CEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTT
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCC--EEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHHHHHHHhhcC
Confidence 468999999999999999999999998 6777776421 1111110000 0 1233445566667778889
Q ss_pred cEEEEceEEEEe-ccccccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCC--cEEEecCHHHHHhhcccCCCCCcEEE
Q psy2951 663 IHVIKGKKIISD-SELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHITPESNVVV 739 (1466)
Q Consensus 663 v~~~~~~~v~~i-~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~vvV 739 (1466)
+++...+ +... .+.....+.+.++.++.||+||||||++|+.|++| |.+ .............. ....++++++|
T Consensus 81 ~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~~~~~~~ip-G~~~~~~~~~~~~~~~~~~-~~~~~~~~vvV 157 (314)
T 4a5l_A 81 TTIITET-IDHVDFSTQPFKLFTEEGKEVLTKSVIIATGATAKRMHVP-GEDKYWQNGVSACAICDGA-VPIFRNKVLMV 157 (314)
T ss_dssp CEEECCC-EEEEECSSSSEEEEETTCCEEEEEEEEECCCEEECCCCCT-THHHHBTTTEESCHHHHTT-SGGGTTSEEEE
T ss_pred cEEEEeE-EEEeecCCCceEEEECCCeEEEEeEEEEcccccccccCCC-ccccccccceeeehhhhhh-hhhcCCCeEEE
Confidence 9988877 4443 23445567777889999999999999999999999 876 11111122222222 22335899999
Q ss_pred ECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEE-----
Q psy2951 740 IGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAAN----- 814 (1466)
Q Consensus 740 vG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~----- 814 (1466)
||+|++|+|+|..|+++|.+||+++|.+.... ... ...+.+...+++.+....+.++... +.....+.
T Consensus 158 iGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~ 230 (314)
T 4a5l_A 158 VGGGDAAMEEALHLTKYGSKVIILHRRDAFRA---SKT---MQERVLNHPKIEVIWNSELVELEGD-GDLLNGAKIHNLV 230 (314)
T ss_dssp ECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS---CHH---HHHHHHTCTTEEEECSEEEEEEEES-SSSEEEEEEEETT
T ss_pred ECCChHHHHHHHHHHHhCCeeeeecccccccc---cch---hhhhhhcccceeeEeeeeeEEEEee-eeccceeEEeecc
Confidence 99999999999999999999999998875442 222 2344556778999999998888743 32232222
Q ss_pred CCCCcEEecCEEEEccccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHH
Q psy2951 815 LDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQY 894 (1466)
Q Consensus 815 ~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~ 894 (1466)
..+++++++|.|++++|++||+++++. ++.++++|++ +|+++|||.|+|||+|||+..+.. .+..|+.
T Consensus 231 ~~~~~~i~~d~vi~a~G~~pn~~~l~~-~~~~~~~G~i-v~~~~~Ts~pgIyA~GDv~~~~~~----------~~~~A~~ 298 (314)
T 4a5l_A 231 SGEYKVVPVAGLFYAIGHSPNSKFLGG-QVKTADDGYI-LTEGPKTSVDGVFACGDVCDRVYR----------QAIVAAG 298 (314)
T ss_dssp TCCEEEEECSEEEECSCEEESCGGGTT-SSCBCTTSCB-CCBTTBCSSTTEEECSTTTCSSCC----------CHHHHHH
T ss_pred cccceeeccccceEecccccChhHhcc-cceEcCCeeE-eCCCCccCCCCEEEEEeccCCcch----------HHHHHHH
Confidence 345668999999999999999999865 4778888876 888999999999999999987642 2457999
Q ss_pred HHHHHHHHhc
Q psy2951 895 HGRIAALNMV 904 (1466)
Q Consensus 895 ~g~~aA~~i~ 904 (1466)
||+.||.++.
T Consensus 299 ~G~~AA~~~~ 308 (314)
T 4a5l_A 299 SGCMAALSCE 308 (314)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999874
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-31 Score=313.16 Aligned_cols=298 Identities=21% Similarity=0.266 Sum_probs=224.1
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCcc------chhc---ccCcccccccCHhHhhhCCcEE
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKL------SKQL---DIKADSILLRTEEFYKDNDIHV 665 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~------~~~~---~~~~~~~~~~~~~~~~~~gv~~ 665 (1466)
.+||+||||||||+++|+.|++.|++ |+++|+.+.+++..... .... .....++..++.+.+.+.++++
T Consensus 14 ~~dvvIIG~G~aGl~aA~~l~~~g~~--v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 91 (360)
T 3ab1_A 14 MRDLTIIGGGPTGIFAAFQCGMNNIS--CRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVESLWAQAERYNPDV 91 (360)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCC--EEEECSSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHHTTCCEE
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCC--EEEEecCCCCCCcccccCCCcccccCCCCCCCCHHHHHHHHHHHHHHhCCEE
Confidence 58999999999999999999999987 88999876543211000 0000 0122444555566677789999
Q ss_pred EEceEEEEecccc---ccEEEccCCCEEecCEEEEcCCC---CCCcCCCCCC-CC-----cEEEecCHHHHHhhcccCCC
Q psy2951 666 IKGKKIISDSELN---EKKIKLQDGTSIDFTKIYLATGS---SPRTISQADG-VN-----KVFYLRTVEDANNIAPHITP 733 (1466)
Q Consensus 666 ~~~~~v~~i~~~~---~~~v~~~~~~~~~~d~lviAtG~---~~~~~~~~~g-~~-----~~~~~~~~~~~~~~~~~~~~ 733 (1466)
+.+++|..+ +.. ...+.+.++.++.||+||+|||+ .|..++++ | .+ .+++ ...+. .. ..
T Consensus 92 ~~~~~v~~i-~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~~~~~~~~i~-g~~~~~~~~~v~~--~~~~~---~~--~~ 162 (360)
T 3ab1_A 92 VLNETVTKY-TKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQL-GNIDHLTGSSVYY--AVKSV---ED--FK 162 (360)
T ss_dssp ECSCCEEEE-EECTTSCEEEEETTSCEEEEEEEEECCTTCSCCBCCCGGG-CCCTTTBTTTEES--SCSCG---GG--GT
T ss_pred EcCCEEEEE-EECCCceEEEEECCCcEEEeeEEEEccCCCcCCCCCCCCC-CchhhCcCceEEE--ecCCH---HH--cC
Confidence 999889888 443 34677778889999999999998 57777777 7 43 1221 11111 11 14
Q ss_pred CCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEE
Q psy2951 734 ESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAA 813 (1466)
Q Consensus 734 ~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v 813 (1466)
+++|+|||+|++|+|+|..|++.+.+|+++++.+.+.. .+...+.+.+.+++.||++++++++++++.. ++++..+
T Consensus 163 ~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~---~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~-~~~v~~v 238 (360)
T 3ab1_A 163 GKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQG---HGKTAHEVERARANGTIDVYLETEVASIEES-NGVLTRV 238 (360)
T ss_dssp TCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSS---CSHHHHSSHHHHHHTSEEEESSEEEEEEEEE-TTEEEEE
T ss_pred CCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCC---CHHHHHHHHHHhhcCceEEEcCcCHHHhccC-CCceEEE
Confidence 89999999999999999999999999999999876542 2355667788888999999999999999843 4444455
Q ss_pred ECC--CC--cEEecCEEEEccccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccH
Q psy2951 814 NLD--NG--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHY 889 (1466)
Q Consensus 814 ~~~--~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~ 889 (1466)
.+. +| +++++|.||+|+|++|++++++..+++++ +|+|.||++++|+.|+|||+|||+..+.. +..+
T Consensus 239 ~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~-~g~i~vd~~~~t~~~~vya~GD~~~~~~~--------~~~~ 309 (360)
T 3ab1_A 239 HLRSSDGSKWTVEADRLLILIGFKSNLGPLARWDLELY-ENALVVDSHMKTSVDGLYAAGDIAYYPGK--------LKII 309 (360)
T ss_dssp EEEETTCCEEEEECSEEEECCCBCCSCGGGGGSSCCEE-TTEEECCTTSBCSSTTEEECSTTEECTTC--------CCSH
T ss_pred EEEecCCCeEEEeCCEEEECCCCCCCHHHHHhhccccc-cCeeeecCCCcCCCCCEEEecCccCCCCc--------ccee
Confidence 553 66 57999999999999999999998899887 78999999999999999999999976531 2366
Q ss_pred HHHHHHHHHHHHHhccCCCcCcccCee
Q psy2951 890 QLAQYHGRIAALNMVEKKTSLSTIPFF 916 (1466)
Q Consensus 890 ~~A~~~g~~aA~~i~~~~~~~~~~~~~ 916 (1466)
..|..||+.||.+|++.....+..|++
T Consensus 310 ~~A~~~g~~aa~~i~~~l~~~~~~~~~ 336 (360)
T 3ab1_A 310 QTGLSEATMAVRHSLSYIKPGEKIRNV 336 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHSCC------
T ss_pred ehhHHHHHHHHHHHHhhcCCccccCce
Confidence 889999999999998654444444443
|
| >3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-31 Score=321.82 Aligned_cols=302 Identities=17% Similarity=0.192 Sum_probs=228.9
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcc-cCcccccccCHhHhhhCCcEEEEceEEEEe
Q psy2951 596 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD-IKADSILLRTEEFYKDNDIHVIKGKKIISD 674 (1466)
Q Consensus 596 ~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i 674 (1466)
++|||||||+||++||..|++++.+.+|+++++++++.|.........+ .+.+++...+.+++++.||+++.++ |+.+
T Consensus 3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~gv~~i~~~-v~~I 81 (430)
T 3hyw_A 3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINEK-AESI 81 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECSC-EEEE
T ss_pred CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCCcEEEEeE-EEEE
Confidence 6899999999999999999999988899999999887774322211122 5667777778888888999999997 9999
Q ss_pred ccccccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCC-cEEEecCHHHHHhhcccCC---CCCcEEEECCCh------
Q psy2951 675 SELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-KVFYLRTVEDANNIAPHIT---PESNVVVIGSSF------ 744 (1466)
Q Consensus 675 ~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~---~~~~vvVvG~G~------ 744 (1466)
|+++++|++++|++++||+||||||+++. +++| |.+ +.+.+.+.+++.++.+.+. .++.++|+|++.
T Consensus 82 -d~~~~~V~~~~g~~i~YD~LViAtG~~~~-~~i~-G~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~vv~gg~~gve~~~ 158 (430)
T 3hyw_A 82 -DPDANTVTTQSGKKIEYDYLVIATGPKLV-FGAE-GQEENSTSICTAEHALETQKKLQELYANPGPVVIGAIPGVSCFG 158 (430)
T ss_dssp -ETTTTEEEETTCCEEECSEEEECCCCEEE-CCSB-THHHHSCCCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCH
T ss_pred -ECCCCEEEECCCCEEECCEEEEeCCCCcc-CCcc-CcccCcCCcccHHHHHHHHHHHHhhccCCceEEEeCCCcEEEhH
Confidence 99999999999999999999999999864 4677 765 6667788888877655432 245566666542
Q ss_pred HHHHH----HHHHhccC----CeEEEEeecCcc--CccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEE
Q psy2951 745 IGMEA----AAFCASKV----KSVTVVGRGAVP--FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAAN 814 (1466)
Q Consensus 745 ~g~e~----A~~l~~~g----~~V~lv~~~~~~--~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~ 814 (1466)
.+.|+ +..+++.+ .+|+++...+.. +.....+...+.+++.++++||++++++.+++++.+ ++ .+.
T Consensus 159 ~~~e~a~~~~~~l~~~g~~~~v~v~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~GV~~~~~~~v~~v~~~---~~-~~~ 234 (430)
T 3hyw_A 159 PAYEFALMLHYELKKRGIRYKVPMTFITSEPYLGHFGVGGIGASKRLVEDLFAERNIDWIANVAVKAIEPD---KV-IYE 234 (430)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGCCEEEECSSSSTTCTTTTCSTTHHHHHHHHHHHTTCEEECSCEEEEECSS---EE-EEE
T ss_pred HHHHHHHHHHHHHHHhcccccceeeeecccchhhhccchhhHHHHHHHHHHHHhCCeEEEeCceEEEEeCC---ce-EEE
Confidence 23344 34455554 578888877643 223445677788999999999999999999999732 22 334
Q ss_pred CCC--CcEEecCEEEEccccccCccccccCC--ceeeCCCcEEeCCCCC-CCCCCeEEeccccccCCcccCCce-eeecc
Q psy2951 815 LDN--GTTIPADLVIVGIGTVLNTNYLDGKG--VELNGQKAVVVNEYLE-TNVPGVYAGGDIAYAPLHSFYNKN-ASIGH 888 (1466)
Q Consensus 815 ~~~--g~~i~~D~vi~a~G~~p~~~~~~~~g--l~~~~~G~i~vd~~~~-t~~~~iya~GD~~~~~~~~~~~~~-~~~~~ 888 (1466)
..+ ++++++|++++++|.+|+ +++...+ +..+.+|++.+|++|| |++|||||+|||+..|.......+ ..++.
T Consensus 235 ~~~g~~~~i~~d~vi~~~G~~~~-~~~~~~~~~l~~~~~g~i~vd~~lq~t~~~~IfAiGD~a~~p~~~~~~~~~~~pk~ 313 (430)
T 3hyw_A 235 DLNGNTHEVPAKFTMFMPSFQGP-EVVASAGDKVANPANKMVIVNRCFQNPTYKNIFGVGVVTAIPPIEKTPIPTGVPKT 313 (430)
T ss_dssp CTTSCEEEEECSEEEEECEEECC-HHHHTTCTTTBCTTTCCBCCCTTSBCSSSTTEEECSTTBCCCCSSCCSSCCCCCCC
T ss_pred eeCCCceEeecceEEEeccCCCc-hHHHhcccccccCCceEEEecccccCCCCCCEEEeccEEecCCcccCcCcCccchH
Confidence 434 358999999999999998 4555544 4445668899999999 899999999999988754311111 23467
Q ss_pred HHHHHHHHHHHHHHhccC
Q psy2951 889 YQLAQYHGRIAALNMVEK 906 (1466)
Q Consensus 889 ~~~A~~~g~~aA~~i~~~ 906 (1466)
++.|.+||+.+|+||+..
T Consensus 314 a~~A~~qg~~~A~Ni~~~ 331 (430)
T 3hyw_A 314 GMMIEQMAMAVAHNIVND 331 (430)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 889999999999999853
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-31 Score=322.12 Aligned_cols=301 Identities=15% Similarity=0.194 Sum_probs=233.4
Q ss_pred CCcEEEECCchHHHHHHHHHHh---cCCCCcEEEEcCCCCCCCCCCCCchhhc--cCcccccccChhhhccCCcEEEcCC
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQ---NGFTGKLYFITDENFLPYDRVKLSKQLD--IKADSILLRTEEFYKDNDIHVIKGK 1140 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~---~g~~~~i~li~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~ 1140 (1466)
+++|||||||+||+++|..|++ .+. +|+|||++++.+|.. .+..... ...+++.....+++++.+++++.+
T Consensus 4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~--~Vtlie~~~~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~~gv~~~~~- 79 (437)
T 3sx6_A 4 SAHVVILGAGTGGMPAAYEMKEALGSGH--EVTLISANDYFQFVP-SNPWVGVGWKERDDIAFPIRHYVERKGIHFIAQ- 79 (437)
T ss_dssp SCEEEEECCSTTHHHHHHHHHHHHGGGS--EEEEECSSSEEECGG-GHHHHHHTSSCHHHHEEECHHHHHTTTCEEECS-
T ss_pred CCcEEEECCcHHHHHHHHHHhccCCCcC--EEEEEeCCCCCcccC-CccccccCccCHHHHHHHHHHHHHHCCCEEEEe-
Confidence 6799999999999999999999 676 999999999877642 2221111 344555566677888889999865
Q ss_pred eEEEeecCCCCeEEecCCcEEecCeEEEecCCCCCcCCCCCCCC----cEEEecCHHHHHhhhcccCC---CCeEEEEcC
Q psy2951 1141 KIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN----KVFYLRTVEDANNIAPHITP---ESNVVVIGS 1213 (1466)
Q Consensus 1141 ~v~~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~----~v~~~~~~~~~~~l~~~~~~---~~~vvVvG~ 1213 (1466)
+|+.+ |++.++|.++++.++.||+||+|||++|+.+++| |++ +.+.+.+.+++.++++.+.. +++++|||+
T Consensus 80 ~v~~i-d~~~~~V~~~~g~~i~~d~lviAtG~~~~~~~ip-G~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~vVVGg 157 (437)
T 3sx6_A 80 SAEQI-DAEAQNITLADGNTVHYDYLMIATGPKLAFENVP-GSDPHEGPVQSICTVDHAERAFAEYQALLREPGPIVIGA 157 (437)
T ss_dssp CEEEE-ETTTTEEEETTSCEEECSEEEECCCCEECGGGST-TCSTTTSSEECCSSHHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred EEEEE-EcCCCEEEECCCCEEECCEEEECCCCCcCcccCC-CCCcccCcceecccccHHHHHHHHHHHHHhCCCEEEEEc
Confidence 59999 9999999999999999999999999999998898 876 46677789998887764432 456788888
Q ss_pred CH----HH--HHHH----HHHhcCCCe-----EEEEcCCCcCCccccc--HHHHHHHHHHHHhCCcEEEcCceEEEEEec
Q psy2951 1214 SF----IG--MEAA----AFCASKVKS-----VTVVGRGAVPFQESLG--KEVGERITKLFESKGVKFVMKANVSSFEKN 1276 (1466)
Q Consensus 1214 g~----~g--~e~a----~~l~~~g~~-----v~vv~~~~~~~~~~~~--~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~ 1276 (1466)
|. +| +|+| ..+++.|.+ |+++++.+.+....++ ++..+.+.+.++++||+++++++|++++ .
T Consensus 158 G~~~g~~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~~~~~~~l~~~~~~~~~~~~~l~~~gI~~~~~~~v~~v~-~ 236 (437)
T 3sx6_A 158 MAGASCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEEGIEAYTNCKVTKVE-D 236 (437)
T ss_dssp CTTCCCCHHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSSSTTCTTTTCCTTHHHHHHHHHHHTTCEEECSEEEEEEE-T
T ss_pred CCCCCcCcHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCccccccccCcchHHHHHHHHHHHHCCCEEEcCCEEEEEE-C
Confidence 54 44 7766 667777864 9999998866332222 3577889999999999999999999998 3
Q ss_pred CCCcEEEEEcCC-----CCeeecCEEEEeeccccCccccccCCceeeCCCeEEeCCCccc-cCCCEEEecccccCCCccC
Q psy2951 1277 EKNDVTAANLDN-----GTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLET-NVPGVYAGGDIAYAPLHSF 1350 (1466)
Q Consensus 1277 ~~g~~~~v~l~~-----g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t-~~~~v~a~GD~a~~p~~~~ 1350 (1466)
++........+ ++++++|.+++++|..++..+.+.+|+ .+++|+|.||+++|| ++|+|||+|||+..+...
T Consensus 237 -~~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~~~~~~~~~~~gl-~~~~G~i~Vd~~l~t~~~~~Ifa~GD~~~~~~~~- 313 (437)
T 3sx6_A 237 -NKMYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVAGVEGL-CNPGGFVLVDEHQRSKKYANIFAAGIAIAIPPVE- 313 (437)
T ss_dssp -TEEEEEEECTTSCEEEEEEEECSEEEEECCEECCHHHHTSTTT-BCTTSCBCBCTTSBBSSCTTEEECGGGBCCCCSC-
T ss_pred -CeEEEEecccCCccccceEEEEeEEEEcCCCcCchhhhccccc-cCCCCcEEeChhccCCCCCCEEEEEEEeccCCcC-
Confidence 32111112233 567999999999999888666655788 577899999999999 799999999999987531
Q ss_pred CCcee---eeecHHHHHHHHHHHHHHhcCC
Q psy2951 1351 YNKNA---SIGHYQLAQYHGRIAALNMVEK 1377 (1466)
Q Consensus 1351 ~~~~~---~~~~~~~A~~qa~~aa~~i~g~ 1377 (1466)
+.++ ...++..|..||+.||+||+..
T Consensus 314 -~~~~~~~~pk~~~~A~~qg~~aA~ni~~~ 342 (437)
T 3sx6_A 314 -TTPVPTGAPKTGYMIESMVSAAVHNIKAD 342 (437)
T ss_dssp -CCSSCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred -CCcCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 2221 2346789999999999999953
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.7e-31 Score=304.74 Aligned_cols=279 Identities=23% Similarity=0.318 Sum_probs=213.5
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCC---ccchhc---ccCcccccccCHhHhhhCCcEEEEce
Q psy2951 596 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV---KLSKQL---DIKADSILLRTEEFYKDNDIHVIKGK 669 (1466)
Q Consensus 596 ~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~gv~~~~~~ 669 (1466)
+||+||||||||+++|..|++.|++ |+++++.. ++... .+.... .....++..++.+.+++.+++++.++
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g~~--v~li~~~~--gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 77 (310)
T 1fl2_A 2 YDVLIVGSGPAGAAAAIYSARKGIR--TGLMGERF--GGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQ 77 (310)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCC--EEEECSST--TGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCc--EEEEeCCC--CceeccccccccccCcCCCCHHHHHHHHHHHHHHcCCeEEccC
Confidence 6899999999999999999999988 66776531 11110 000000 01223445555667778899999997
Q ss_pred EEEEecccc-----ccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCC-----cEEEecCHHHHHhhcccCCCCCcEEE
Q psy2951 670 KIISDSELN-----EKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-----KVFYLRTVEDANNIAPHITPESNVVV 739 (1466)
Q Consensus 670 ~v~~i~~~~-----~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~vvV 739 (1466)
+|..+ +.. .+.+.++++.++.||+||+|||+.|..|+++ |.+ .++.. .. +......+++|+|
T Consensus 78 ~v~~i-~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~~~~~-g~~~~~~~~~~~~---~~---~~~~~~~~~~v~V 149 (310)
T 1fl2_A 78 SASKL-IPAAVEGGLHQIETASGAVLKARSIIVATGAKWRNMNVP-GEDQYRTKGVTYC---PH---CDGPLFKGKRVAV 149 (310)
T ss_dssp CEEEE-ECCSSTTCCEEEEETTSCEEEEEEEEECCCEEECCCCCT-TTTTTBTTTEESC---HH---HHGGGGBTCEEEE
T ss_pred EEEEE-EecccCCceEEEEECCCCEEEeCEEEECcCCCcCCCCCC-ChhhcccceeEEe---cc---CcHhhcCCCEEEE
Confidence 79888 443 4677787888999999999999999888888 764 23221 11 1122335899999
Q ss_pred ECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHh-cCcEEEccceEEEEEecCCCceEEEECC--
Q psy2951 740 IGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFES-KGVKFVMKANVSSFEKNEKNDVTAANLD-- 816 (1466)
Q Consensus 740 vG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~-~gv~~~~~~~v~~i~~~~~~~~~~v~~~-- 816 (1466)
||+|++|+|+|..|++.+.+|+++++.+.+. ++ +.+.+.+++ .||+++++++++++.. +++++..+.+.
T Consensus 150 vG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~----~~~~~~l~~~~gv~v~~~~~v~~i~~-~~~~v~~v~~~~~ 221 (310)
T 1fl2_A 150 IGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK---AD----QVLQDKLRSLKNVDIILNAQTTEVKG-DGSKVVGLEYRDR 221 (310)
T ss_dssp ECCSHHHHHHHHHHHTTBSEEEEECSSSSCC---SC----HHHHHHHHTCTTEEEESSEEEEEEEE-SSSSEEEEEEEET
T ss_pred ECCCHHHHHHHHHHHHhCCEEEEEEeCcccC---cc----HHHHHHHhhCCCeEEecCCceEEEEc-CCCcEEEEEEEEC
Confidence 9999999999999999999999999988653 23 334566676 6999999999999984 34455455554
Q ss_pred -CCc--EEecCEEEEccccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHH
Q psy2951 817 -NGT--TIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQ 893 (1466)
Q Consensus 817 -~g~--~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~ 893 (1466)
+|+ ++++|.||+|+|++|++++++.. ++++++|+|.||++++|+.|+|||+|||+..+.. .+..|+
T Consensus 222 ~~g~~~~i~~D~vi~a~G~~p~~~~l~~~-l~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~----------~~~~A~ 290 (310)
T 1fl2_A 222 VSGDIHNIELAGIFVQIGLLPNTNWLEGA-VERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYK----------QIIIAT 290 (310)
T ss_dssp TTCCEEEEECSEEEECSCEEESCGGGTTT-SCBCTTSCBCCCTTCBCSSTTEEECSTTBSCSSC----------CHHHHH
T ss_pred CCCcEEEEEcCEEEEeeCCccCchHHhcc-ccccCCCcEEcCCCCccCCCCEEEeecccCCcch----------hhhhhH
Confidence 353 78999999999999999888764 7888889999999999999999999999987532 346899
Q ss_pred HHHHHHHHHhcc
Q psy2951 894 YHGRIAALNMVE 905 (1466)
Q Consensus 894 ~~g~~aA~~i~~ 905 (1466)
.||+.||.+|..
T Consensus 291 ~~g~~aa~~i~~ 302 (310)
T 1fl2_A 291 GEGAKASLSAFD 302 (310)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 999999999964
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8e-31 Score=308.76 Aligned_cols=298 Identities=17% Similarity=0.201 Sum_probs=226.1
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCC------CCCchhhc---cCcccccccChhhhccCCcEE
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR------VKLSKQLD---IKADSILLRTEEFYKDNDIHV 1136 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~------~~l~~~~~---~~~~~~~~~~~~~~~~~~v~~ 1136 (1466)
+++|+|||||+||+++|..|++.|+ +|+|||+++.++... ..+..... ....++.....+++++.++++
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~~g~--~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (332)
T 3lzw_A 7 VYDITIIGGGPVGLFTAFYGGMRQA--SVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTI 84 (332)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTC--CEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCEE
T ss_pred cceEEEECCCHHHHHHHHHHHHCCC--CEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCcE
Confidence 4689999999999999999999998 999999987654111 00000000 012222223335566779999
Q ss_pred EcCCeEEEeecCCCC---eEEecCCcEEecCeEEEecCC---CCCcCCCCCCCC-----cEEEecCHHHHHhhhcccCCC
Q psy2951 1137 IKGKKIISDSELNEK---KIKLQDGTSIDFTKIYLATGS---SPRTISQADGVN-----KVFYLRTVEDANNIAPHITPE 1205 (1466)
Q Consensus 1137 ~~~~~v~~i~d~~~~---~v~~~~g~~~~yd~lvlAtG~---~~~~~~~~~g~~-----~v~~~~~~~~~~~l~~~~~~~ 1205 (1466)
+++++|+.+ +...+ .|.+++++ +.||+||+|||+ .|+.++++ |.+ .+++ .+.+...+ .+
T Consensus 85 ~~~~~v~~i-~~~~~~~~~v~~~~g~-~~~d~vVlAtG~~~~~p~~~~~~-g~~~~~g~~~~~--~~~~~~~~-----~~ 154 (332)
T 3lzw_A 85 CLEQAVESV-EKQADGVFKLVTNEET-HYSKTVIITAGNGAFKPRKLELE-NAEQYEGKNLHY--FVDDLQKF-----AG 154 (332)
T ss_dssp ECSCCEEEE-EECTTSCEEEEESSEE-EEEEEEEECCTTSCCEECCCCCT-TGGGGBTTTEES--SCSCGGGG-----BT
T ss_pred EccCEEEEE-EECCCCcEEEEECCCE-EEeCEEEECCCCCcCCCCCCCCC-ChhhccCceEEE--ecCCHHHc-----CC
Confidence 999999999 88766 78887875 999999999999 88888888 765 2333 33333322 37
Q ss_pred CeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEE
Q psy2951 1206 SNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAAN 1285 (1466)
Q Consensus 1206 ~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~ 1285 (1466)
++++|||+|.+|+|+|..|++.+.+|+++++.+.... ... ..+.++++||++++++++++++ .++ ....|.
T Consensus 155 ~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~--~~~-----~~~~l~~~gv~~~~~~~v~~i~-~~~-~~~~v~ 225 (332)
T 3lzw_A 155 RRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRA--HEH-----SVENLHASKVNVLTPFVPAELI-GED-KIEQLV 225 (332)
T ss_dssp CEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSS--CHH-----HHHHHHHSSCEEETTEEEEEEE-CSS-SCCEEE
T ss_pred CEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCc--cHH-----HHHHHhcCCeEEEeCceeeEEe-cCC-ceEEEE
Confidence 8999999999999999999999999999999886543 111 2344788999999999999998 333 344566
Q ss_pred cCC-----CCeeecCEEEEeeccccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecH
Q psy2951 1286 LDN-----GTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHY 1360 (1466)
Q Consensus 1286 l~~-----g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~ 1360 (1466)
+.+ ++++++|.||+++|..|++++++..|+.. .+|+|.||++++|+.|+|||+|||+..+.. ...+
T Consensus 226 ~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~--------~~~~ 296 (332)
T 3lzw_A 226 LEEVKGDRKEILEIDDLIVNYGFVSSLGPIKNWGLDI-EKNSIVVKSTMETNIEGFFAAGDICTYEGK--------VNLI 296 (332)
T ss_dssp EEETTSCCEEEEECSEEEECCCEECCCGGGGGSSCCE-ETTEEECCTTSBCSSTTEEECGGGEECTTC--------CCCH
T ss_pred EEecCCCceEEEECCEEEEeeccCCCchHHhhcCccc-cCCeEEeCCCCceecCCEEEccceecCCCC--------cceE
Confidence 655 46789999999999999999999999998 478999999999999999999999976532 2346
Q ss_pred HHHHHHHHHHHHHhcCCCCC-CCCCccceecccc
Q psy2951 1361 QLAQYHGRIAALNMVEKKTS-LSTIPFFWTMLFG 1393 (1466)
Q Consensus 1361 ~~A~~qa~~aa~~i~g~~~~-~~~~p~~w~~~~~ 1393 (1466)
..|..||+.||.+|+..... ....|++++..+.
T Consensus 297 ~~A~~~g~~aa~~i~~~l~~~~~~~~~~s~~~~~ 330 (332)
T 3lzw_A 297 ASGFGEAPTAVNNAKAYMDPKARVQPLHSTSLFE 330 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSCCCHHHHC-
T ss_pred eeehhhHHHHHHHHHHhhChhhccCCceeccccc
Confidence 89999999999999864332 2345666665443
|
| >3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-31 Score=321.04 Aligned_cols=292 Identities=14% Similarity=0.148 Sum_probs=229.1
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhc---cCcccccccChhhhccCCcEEEcCCeE
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD---IKADSILLRTEEFYKDNDIHVIKGKKI 1142 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~v 1142 (1466)
.++|||||||+||++||..|++.+.+.+|+|||+++++.| .+++..+. .+.+.+. ++.+.+.+++++++.++ |
T Consensus 2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~--~p~~~~v~~g~~~~~~~~-~~~~~~~~~gv~~i~~~-v 77 (401)
T 3vrd_B 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYT--CYMSNEVIGGDRELASLR-VGYDGLRAHGIQVVHDS-A 77 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEEC--STTHHHHHHTSSCGGGGE-ECSHHHHHTTCEEECSC-E
T ss_pred cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCC--ccCHHHHhcCCCCHHHHh-hCHHHHHHCCCEEEEeE-E
Confidence 4689999999999999999999988889999998876443 33433332 3344443 34445667899999886 9
Q ss_pred EEeecCCCCeEEecCCcEEecCeEEEecCCCCCcCCCCCCCC------cEEEecCHHHHHhhhcccC---CCCeEEEEcC
Q psy2951 1143 ISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN------KVFYLRTVEDANNIAPHIT---PESNVVVIGS 1213 (1466)
Q Consensus 1143 ~~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~------~v~~~~~~~~~~~l~~~~~---~~~~vvVvG~ 1213 (1466)
+.| |+++++|.+.+|.++.||+||+|||++++.++++ |++ .++.+++.+++..+++.+. .++.+++.++
T Consensus 78 ~~i-d~~~~~v~~~~g~~i~yd~LviAtG~~~~~~~i~-G~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~ 155 (401)
T 3vrd_B 78 LGI-DPDKKLVKTAGGAEFAYDRCVVAPGIDLLYDKIE-GYSEALAAKLPHAWKAGEQTALLRRQLESMDDGGVVIIAPP 155 (401)
T ss_dssp EEE-ETTTTEEEETTSCEEECSEEEECCCEEECGGGSB-TCCSGGGGTSCCCSSCSHHHHHHHHHHHHSCTTCEEEEECC
T ss_pred EEE-EccCcEEEecccceeecceeeeccCCccccCCcc-CchhhcccCccceeccHHHHHHHHHHHHhcccCCcEEEecC
Confidence 999 9999999999999999999999999999999998 876 4677788888888776543 3455555443
Q ss_pred C----------HHHHHHHHHHhcCC--CeEEEEcCCCcCCc-ccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCc
Q psy2951 1214 S----------FIGMEAAAFCASKV--KSVTVVGRGAVPFQ-ESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKND 1280 (1466)
Q Consensus 1214 g----------~~g~e~a~~l~~~g--~~v~vv~~~~~~~~-~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~ 1280 (1466)
+ -++++++..+++.+ .+|+++++.+.+.. ..+.+.+.+.+.+.++++||+++++.++..++... .
T Consensus 156 ~~~i~~~~a~~e~~~~~a~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~v~~v~~~~--~ 233 (401)
T 3vrd_B 156 APPFRCPPGPYERASQIAHYLKAHKSKSKVIILDNSQTFSKQAQFTKGWERLYGFGTENALIEWHPGPDAAVVKTDT--E 233 (401)
T ss_dssp SSSCBCTTHHHHHHHHHHHHHHHHCTTCEEEEECSSSSCTTHHHHHHHHHHHSCTTSTTCSEEEECTTTTCEEEEET--T
T ss_pred CccEEeehHHHHHHHHHHHHHHhcCCCCEEEEEcccccccccccccHHHHHHHHHHHHhcCcEEEeCceEEEEEecc--c
Confidence 2 14567777777665 68999998876532 34556677777777889999999999998887322 3
Q ss_pred EEEEEcCCCCeeecCEEEEeeccccCccccccCCceeeCCCeEEeCCC-cc-ccCCCEEEecccccC-CCccCCCceeee
Q psy2951 1281 VTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEY-LE-TNVPGVYAGGDIAYA-PLHSFYNKNASI 1357 (1466)
Q Consensus 1281 ~~~v~l~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~-~~-t~~~~v~a~GD~a~~-p~~~~~~~~~~~ 1357 (1466)
...+++++|+++++|+|++++|..|+ ++++.+|+. +++|+|.||++ +| |++|||||+|||+.. |.+.
T Consensus 234 ~~~v~~~~g~~i~~D~vi~~~g~~~~-~~~~~~gl~-~~~G~i~VD~~tl~~t~~p~VfAiGDva~~~~~pk-------- 303 (401)
T 3vrd_B 234 AMTVETSFGETFKAAVINLIPPQRAG-KIAQSASLT-NDSGWCPVDIRTFESSLQPGIHVIGDACNAAPMPK-------- 303 (401)
T ss_dssp TTEEEETTSCEEECSEEEECCCEEEC-HHHHHTTCC-CTTSSBCBCTTTCBBSSSTTEEECGGGBCCTTSCB--------
T ss_pred ceEEEcCCCcEEEeeEEEEecCcCCc-hhHhhcccc-ccCCCEEECCCcceecCCCCEEEecccccCCCCCc--------
Confidence 34588999999999999999999988 688889994 67899999976 65 679999999999864 4433
Q ss_pred ecHHHHHHHHHHHHHHhcC
Q psy2951 1358 GHYQLAQYHGRIAALNMVE 1376 (1466)
Q Consensus 1358 ~~~~~A~~qa~~aa~~i~g 1376 (1466)
+.+.|..||+++|+||+.
T Consensus 304 -~a~~A~~qa~v~A~ni~~ 321 (401)
T 3vrd_B 304 -SAYSANSQAKVAAAAVVA 321 (401)
T ss_dssp -SHHHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHHHH
Confidence 237899999999999984
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6e-31 Score=310.69 Aligned_cols=288 Identities=17% Similarity=0.189 Sum_probs=215.9
Q ss_pred cCCCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC----CCCCCCCccc------h-hcccCcccccccCHhHh
Q psy2951 590 LSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN----FLPYDRVKLS------K-QLDIKADSILLRTEEFY 658 (1466)
Q Consensus 590 ~~~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~----~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~ 658 (1466)
+....++||+|||||+|||++|+.|+++|++ |+++|+.+ ..++...... . .......++..++.+.+
T Consensus 17 ~~~~~~~~vvIIG~G~aGl~aA~~l~~~g~~--v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (338)
T 3itj_A 17 RGSHVHNKVTIIGSGPAAHTAAIYLARAEIK--PILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQS 94 (338)
T ss_dssp ----CEEEEEEECCSHHHHHHHHHHHHTTCC--CEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHH
T ss_pred CCCCCCCCEEEECcCHHHHHHHHHHHHCCCC--EEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHH
Confidence 3445578999999999999999999999988 77788743 2221111000 0 00123345666677788
Q ss_pred hhCCcEEEEceEEEEeccccccEE--Ec---cCCCEEecCEEEEcCCCCCCcCCCCCCCC-----cEEEecCHHHHHhhc
Q psy2951 659 KDNDIHVIKGKKIISDSELNEKKI--KL---QDGTSIDFTKIYLATGSSPRTISQADGVN-----KVFYLRTVEDANNIA 728 (1466)
Q Consensus 659 ~~~gv~~~~~~~v~~i~~~~~~~v--~~---~~~~~~~~d~lviAtG~~~~~~~~~~g~~-----~~~~~~~~~~~~~~~ 728 (1466)
.+.+++++.++ |..+ +.....+ .+ .++.++.||+||+|||+.|+.|+++ |.+ .+... .......
T Consensus 95 ~~~gv~i~~~~-v~~i-~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~~~~~~~-g~~~~~~~~~~~~---~~~~~~~ 168 (338)
T 3itj_A 95 TKFGTEIITET-VSKV-DLSSKPFKLWTEFNEDAEPVTTDAIILATGASAKRMHLP-GEETYWQKGISAC---AVCDGAV 168 (338)
T ss_dssp HHTTCEEECSC-EEEE-ECSSSSEEEEETTCSSSCCEEEEEEEECCCEEECCCCCT-THHHHBTTTEESC---HHHHTTS
T ss_pred HHcCCEEEEeE-EEEE-EEcCCEEEEEEEecCCCcEEEeCEEEECcCCCcCCCCCC-CchhccCccEEEc---hhcccch
Confidence 88999999999 8888 6554433 33 3667899999999999999999888 754 22211 1111111
Q ss_pred ccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhc-CcEEEccceEEEEEecCC
Q psy2951 729 PHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESK-GVKFVMKANVSSFEKNEK 807 (1466)
Q Consensus 729 ~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~-gv~~~~~~~v~~i~~~~~ 807 (1466)
....+++++|||+|.+|+|+|..|++.+.+|+++++.+.+.. .+.+.+.+.+. ||++++++.+++++.+ +
T Consensus 169 -~~~~~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~-------~~~~~~~l~~~~gv~i~~~~~v~~i~~~-~ 239 (338)
T 3itj_A 169 -PIFRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA-------STIMQKRAEKNEKIEILYNTVALEAKGD-G 239 (338)
T ss_dssp -GGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS-------CHHHHHHHHHCTTEEEECSEEEEEEEES-S
T ss_pred -hhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC-------CHHHHHHHHhcCCeEEeecceeEEEEcc-c
Confidence 023589999999999999999999999999999999886553 23445556555 9999999999999843 4
Q ss_pred CceEEEECCC-----CcEEecCEEEEccccccCccccccCCceeeCCCcEEe-CCCCCCCCCCeEEeccccccCCcccCC
Q psy2951 808 NDVTAANLDN-----GTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVV-NEYLETNVPGVYAGGDIAYAPLHSFYN 881 (1466)
Q Consensus 808 ~~~~~v~~~~-----g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~v-d~~~~t~~~~iya~GD~~~~~~~~~~~ 881 (1466)
+.+..+.+.+ ++++++|.||+|+|++|++.+++. +++++++|++.+ |++++|+.|+|||+|||+..+.
T Consensus 240 ~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~-~l~~~~~G~i~v~~~~~~t~~~~vya~GD~~~~~~----- 313 (338)
T 3itj_A 240 KLLNALRIKNTKKNEETDLPVSGLFYAIGHTPATKIVAG-QVDTDEAGYIKTVPGSSLTSVPGFFAAGDVQDSKY----- 313 (338)
T ss_dssp SSEEEEEEEETTTTEEEEEECSEEEECSCEEECCGGGBT-TBCBCTTSCBCCCTTSSBCSSTTEEECGGGGCSSC-----
T ss_pred CcEEEEEEEECCCCceEEEEeCEEEEEeCCCCChhHhhC-ceEecCCCcEEEcCcccccCCCCEEEeeccCCCCc-----
Confidence 4455566654 468999999999999999998887 899999999995 8899999999999999997432
Q ss_pred ceeeeccHHHHHHHHHHHHHHhcc
Q psy2951 882 KNASIGHYQLAQYHGRIAALNMVE 905 (1466)
Q Consensus 882 ~~~~~~~~~~A~~~g~~aA~~i~~ 905 (1466)
..+..|+.||+.||.+|..
T Consensus 314 -----~~~~~A~~~g~~aa~~i~~ 332 (338)
T 3itj_A 314 -----RQAITSAGSGCMAALDAEK 332 (338)
T ss_dssp -----CCHHHHHHHHHHHHHHHHH
T ss_pred -----cceeeehhhhHHHHHHHHH
Confidence 2457899999999999864
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=306.39 Aligned_cols=279 Identities=22% Similarity=0.282 Sum_probs=217.3
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCC---------CCCCCCchhhccCcccccccChhhhccCCcEE
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP---------YDRVKLSKQLDIKADSILLRTEEFYKDNDIHV 1136 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~---------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ 1136 (1466)
+++|+|||||+||+++|..|++.|+ +|+|||++ ++ +..+.... .....+.....+++.+.++++
T Consensus 15 ~~~vvIIG~G~aGl~aA~~l~~~g~--~v~lie~~--~gg~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~ 87 (323)
T 3f8d_A 15 KFDVIIVGLGPAAYGAALYSARYML--KTLVIGET--PGGQLTEAGIVDDYLGLIE---IQASDMIKVFNKHIEKYEVPV 87 (323)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTC--CEEEEESS--TTGGGGGCCEECCSTTSTT---EEHHHHHHHHHHHHHTTTCCE
T ss_pred ccCEEEECccHHHHHHHHHHHHCCC--cEEEEecc--CCCeecccccccccCCCCC---CCHHHHHHHHHHHHHHcCCEE
Confidence 4689999999999999999999998 89999997 11 11111110 111222222335566779999
Q ss_pred EcCCeEEEeecCCCC--eEEecCCcEEecCeEEEecCCCCCcCCCCCCCC-----cEEEecCHHHHHhhhcccCCCCeEE
Q psy2951 1137 IKGKKIISDSELNEK--KIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-----KVFYLRTVEDANNIAPHITPESNVV 1209 (1466)
Q Consensus 1137 ~~~~~v~~i~d~~~~--~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~-----~v~~~~~~~~~~~l~~~~~~~~~vv 1209 (1466)
+. ++|..+ +...+ .|.+.++.++.||+||+|||+.|+.++++ |.+ ++++.. ..+. ....+++++
T Consensus 88 ~~-~~v~~i-~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~~i~-g~~~~~~~~~~~~~-~~~~-----~~~~~~~v~ 158 (323)
T 3f8d_A 88 LL-DIVEKI-ENRGDEFVVKTKRKGEFKADSVILGIGVKRRKLGVP-GEQEFAGRGISYCS-VADA-----PLFKNRVVA 158 (323)
T ss_dssp EE-SCEEEE-EEC--CEEEEESSSCEEEEEEEEECCCCEECCCCCT-TTTTTBTTTEESCH-HHHG-----GGGTTCEEE
T ss_pred EE-EEEEEE-EecCCEEEEEECCCCEEEcCEEEECcCCCCccCCCC-chhhhcCCceEEec-cCCH-----hHcCCCEEE
Confidence 88 779999 87643 57777888999999999999999998888 765 344322 2222 223479999
Q ss_pred EEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCC-
Q psy2951 1210 VIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDN- 1288 (1466)
Q Consensus 1210 VvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~- 1288 (1466)
|||+|.+|+|+|..|++.|.+|+++++.+.++. .+ ..+.+++++.||++++++++++++ .+ +++..|.+.+
T Consensus 159 vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~---~~---~~~~~~~~~~gv~~~~~~~v~~i~-~~-~~~~~v~~~~~ 230 (323)
T 3f8d_A 159 VIGGGDSALEGAEILSSYSTKVYLIHRRDTFKA---QP---IYVETVKKKPNVEFVLNSVVKEIK-GD-KVVKQVVVENL 230 (323)
T ss_dssp EECCSHHHHHHHHHHHHHSSEEEEECSSSSCCS---CH---HHHHHHHTCTTEEEECSEEEEEEE-ES-SSEEEEEEEET
T ss_pred EECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCc---CH---HHHHHHHhCCCcEEEeCCEEEEEe-cc-CceeEEEEEEC
Confidence 999999999999999999999999999987664 22 233444555699999999999998 33 5666677765
Q ss_pred --CC--eeecCEEEEeeccccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHH
Q psy2951 1289 --GT--TIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQ 1364 (1466)
Q Consensus 1289 --g~--~i~~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~ 1364 (1466)
|+ ++++|.||+++|..|++++++..|+.++.+|+|.||++++|+.|+|||+|||+..+. ....+..|.
T Consensus 231 ~~g~~~~~~~D~vv~a~G~~p~~~~~~~~g~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~--------~~~~~~~A~ 302 (323)
T 3f8d_A 231 KTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMRTSVPGVFAAGDCTSAWL--------GFRQVITAV 302 (323)
T ss_dssp TTCCEEEEECSEEEECCCEECCHHHHHHTTCCBCTTSSBCCCTTCBCSSTTEEECSTTBSTTT--------TCCCHHHHH
T ss_pred CCCceEEEEcCEEEEEECCCCChhHHhhcCeeecCCCcEecCCCceecCCCEEEcceecCCCC--------cccceeehh
Confidence 76 789999999999999999999999999989999999999999999999999998641 023458999
Q ss_pred HHHHHHHHHhcC
Q psy2951 1365 YHGRIAALNMVE 1376 (1466)
Q Consensus 1365 ~qa~~aa~~i~g 1376 (1466)
.||+.||.||+.
T Consensus 303 ~~g~~aa~~i~~ 314 (323)
T 3f8d_A 303 AQGAVAATSAYR 314 (323)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 999999999874
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=301.04 Aligned_cols=274 Identities=16% Similarity=0.206 Sum_probs=213.7
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCC---CccchhcccCcccccccCHhHhhhC-CcEEEEceE
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR---VKLSKQLDIKADSILLRTEEFYKDN-DIHVIKGKK 670 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-gv~~~~~~~ 670 (1466)
++||+|||||+||+++|..|+++|++ |+++|++....... ..+.........++..++.+.+.+. +++++.++
T Consensus 2 ~~~vvIIG~G~aGl~aA~~l~~~g~~--v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~- 78 (297)
T 3fbs_A 2 KFDVIIIGGSYAGLSAALQLGRARKN--ILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERYPTIHWVEGR- 78 (297)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCC--EEEEECCCCGGGGCSCCCSSTTCTTCCHHHHHHHHHHHHTTCTTEEEEESC-
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCC--EEEEeCCCcccccchhhcCCcCCCCCCHHHHHHHHHHHHHhcCCeEEEEeE-
Confidence 47999999999999999999999987 88888764221111 1111111134455666667777776 78888775
Q ss_pred EEEecccc--ccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCC-----cEEEecCHHHHHhhcccCCCCCcEEEECCC
Q psy2951 671 IISDSELN--EKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-----KVFYLRTVEDANNIAPHITPESNVVVIGSS 743 (1466)
Q Consensus 671 v~~i~~~~--~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G 743 (1466)
|+.+ +.. .+.+.+.++.++.||+||+|||+.|+.|+++ |.+ .++... ..+ .....+++|+|||+|
T Consensus 79 v~~i-~~~~~~~~v~~~~g~~~~~d~vviAtG~~~~~~~~~-g~~~~~~~~~~~~~-~~~-----~~~~~~~~v~vvG~G 150 (297)
T 3fbs_A 79 VTDA-KGSFGEFIVEIDGGRRETAGRLILAMGVTDELPEIA-GLRERWGSAVFHCP-YCH-----GYELDQGKIGVIAAS 150 (297)
T ss_dssp EEEE-EEETTEEEEEETTSCEEEEEEEEECCCCEEECCCCB-TTGGGBTTTEESCH-HHH-----TGGGTTCEEEEECCS
T ss_pred EEEE-EEcCCeEEEEECCCCEEEcCEEEECCCCCCCCCCCC-CchhhcCCeeEEcc-cCc-----chhhcCCEEEEEecC
Confidence 8888 544 3577888888999999999999999999888 765 222111 111 112248999999999
Q ss_pred hHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEec
Q psy2951 744 FIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPA 823 (1466)
Q Consensus 744 ~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~ 823 (1466)
++|+|+|..|++.| +|+++.+.+.. +. +.+.+.+++.||+++. +++++++.. + .+.+.+|+++++
T Consensus 151 ~~~~e~a~~l~~~g-~v~~v~~~~~~----~~----~~~~~~l~~~gv~i~~-~~v~~i~~~--~---~v~~~~g~~~~~ 215 (297)
T 3fbs_A 151 PMAIHHALMLPDWG-ETTFFTNGIVE----PD----ADQHALLAARGVRVET-TRIREIAGH--A---DVVLADGRSIAL 215 (297)
T ss_dssp TTHHHHHHHGGGTS-EEEEECTTTCC----CC----HHHHHHHHHTTCEEEC-SCEEEEETT--E---EEEETTSCEEEE
T ss_pred ccHHHHHHHhhhcC-cEEEEECCCCC----CC----HHHHHHHHHCCcEEEc-ceeeeeecC--C---eEEeCCCCEEEE
Confidence 99999999999999 99999988652 22 3456788899999996 899999832 2 677889999999
Q ss_pred CEEEEccccccCccccccCCceee--CCC-cEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHH
Q psy2951 824 DLVIVGIGTVLNTNYLDGKGVELN--GQK-AVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAA 900 (1466)
Q Consensus 824 D~vi~a~G~~p~~~~~~~~gl~~~--~~G-~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA 900 (1466)
|.||+++|++|++++++.++++++ +.| ++.+|++++|+.|+|||+|||+..+. .+..|+.||+.||
T Consensus 216 D~vi~a~G~~p~~~~~~~~g~~~~~~~~G~~i~vd~~~~t~~~~vya~GD~~~~~~-----------~~~~A~~~g~~aa 284 (297)
T 3fbs_A 216 AGLFTQPKLRITVDWIEKLGCAVEEGPMGSTIVTDPMKQTTARGIFACGDVARPAG-----------SVALAVGDGAMAG 284 (297)
T ss_dssp SEEEECCEEECCCSCHHHHTCCEEEETTEEEECCCTTCBCSSTTEEECSGGGCTTC-----------CHHHHHHHHHHHH
T ss_pred EEEEEccCcccCchhHHhcCCccccCCCCceEEeCCCCccCCCCEEEEeecCCchH-----------HHHHHHHhHHHHH
Confidence 999999999999999998888887 457 89999999999999999999998643 4579999999999
Q ss_pred HHhcc
Q psy2951 901 LNMVE 905 (1466)
Q Consensus 901 ~~i~~ 905 (1466)
.+|..
T Consensus 285 ~~i~~ 289 (297)
T 3fbs_A 285 AAAHR 289 (297)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99864
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.4e-31 Score=307.32 Aligned_cols=282 Identities=20% Similarity=0.253 Sum_probs=217.7
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCcc------chhcccCcccccccCHhHhhhCCcEEEEc
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKL------SKQLDIKADSILLRTEEFYKDNDIHVIKG 668 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~gv~~~~~ 668 (1466)
++||+|||||+||+++|+.|+++|++ |+++|++ +++..... .........++..++.+.+++.+++++.
T Consensus 15 ~~~vvIIG~G~aGl~aA~~l~~~g~~--v~lie~~--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~- 89 (323)
T 3f8d_A 15 KFDVIIVGLGPAAYGAALYSARYMLK--TLVIGET--PGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLL- 89 (323)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCC--EEEEESS--TTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHHTTTCCEEE-
T ss_pred ccCEEEECccHHHHHHHHHHHHCCCc--EEEEecc--CCCeecccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEE-
Confidence 57999999999999999999999988 8888887 22111100 0000123345666667778888999999
Q ss_pred eEEEEecccc--ccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCC-----cEEEecCHHHHHhhcccCCCCCcEEEEC
Q psy2951 669 KKIISDSELN--EKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-----KVFYLRTVEDANNIAPHITPESNVVVIG 741 (1466)
Q Consensus 669 ~~v~~i~~~~--~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~vvVvG 741 (1466)
++|..+ +.+ ...+.+.++.++.||+||+|||+.|+.|+++ |.+ .+. .....+ .....+++++|||
T Consensus 90 ~~v~~i-~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~~i~-g~~~~~~~~~~-~~~~~~-----~~~~~~~~v~vvG 161 (323)
T 3f8d_A 90 DIVEKI-ENRGDEFVVKTKRKGEFKADSVILGIGVKRRKLGVP-GEQEFAGRGIS-YCSVAD-----APLFKNRVVAVIG 161 (323)
T ss_dssp SCEEEE-EEC--CEEEEESSSCEEEEEEEEECCCCEECCCCCT-TTTTTBTTTEE-SCHHHH-----GGGGTTCEEEEEC
T ss_pred EEEEEE-EecCCEEEEEECCCCEEEcCEEEECcCCCCccCCCC-chhhhcCCceE-EeccCC-----HhHcCCCEEEEEC
Confidence 668888 544 4567777778999999999999999999888 765 222 111111 1233589999999
Q ss_pred CChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCC---C
Q psy2951 742 SSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDN---G 818 (1466)
Q Consensus 742 ~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~---g 818 (1466)
+|++|+|+|..|++.+.+|+++++.+.++. +++ .+.+.+++.||++++++++++++.+ +++..+.+.+ |
T Consensus 162 ~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~---~~~---~~~~~~~~~gv~~~~~~~v~~i~~~--~~~~~v~~~~~~~g 233 (323)
T 3f8d_A 162 GGDSALEGAEILSSYSTKVYLIHRRDTFKA---QPI---YVETVKKKPNVEFVLNSVVKEIKGD--KVVKQVVVENLKTG 233 (323)
T ss_dssp CSHHHHHHHHHHHHHSSEEEEECSSSSCCS---CHH---HHHHHHTCTTEEEECSEEEEEEEES--SSEEEEEEEETTTC
T ss_pred CCHHHHHHHHHHHHhCCeEEEEEeCCCCCc---CHH---HHHHHHhCCCcEEEeCCEEEEEecc--CceeEEEEEECCCC
Confidence 999999999999999999999999987653 222 2333344559999999999999843 4455566654 6
Q ss_pred c--EEecCEEEEccccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHH
Q psy2951 819 T--TIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHG 896 (1466)
Q Consensus 819 ~--~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g 896 (1466)
+ ++++|.||+++|++|++++++..+++++++|+|.+|++++|+.|+|||+|||+..+. .+..+..|+.||
T Consensus 234 ~~~~~~~D~vv~a~G~~p~~~~~~~~g~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~--------~~~~~~~A~~~g 305 (323)
T 3f8d_A 234 EIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMRTSVPGVFAAGDCTSAWL--------GFRQVITAVAQG 305 (323)
T ss_dssp CEEEEECSEEEECCCEECCHHHHHHTTCCBCTTSSBCCCTTCBCSSTTEEECSTTBSTTT--------TCCCHHHHHHHH
T ss_pred ceEEEEcCEEEEEECCCCChhHHhhcCeeecCCCcEecCCCceecCCCEEEcceecCCCC--------cccceeehhhHH
Confidence 6 799999999999999999999999999999999999999999999999999998631 013568999999
Q ss_pred HHHHHHhcc
Q psy2951 897 RIAALNMVE 905 (1466)
Q Consensus 897 ~~aA~~i~~ 905 (1466)
+.||.+|+.
T Consensus 306 ~~aa~~i~~ 314 (323)
T 3f8d_A 306 AVAATSAYR 314 (323)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999864
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-30 Score=303.88 Aligned_cols=280 Identities=20% Similarity=0.223 Sum_probs=213.1
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCcc---chh--c--ccCcccccccCHhHhhhCCcEEE
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKL---SKQ--L--DIKADSILLRTEEFYKDNDIHVI 666 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~---~~~--~--~~~~~~~~~~~~~~~~~~gv~~~ 666 (1466)
.++||+||||||||+++|..|+++|++ |+++|+.. +++..... ... + .....++..++.+.+++.+++++
T Consensus 7 ~~~dvvIIG~G~aGl~aA~~l~~~g~~--v~lie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~ 83 (325)
T 2q7v_A 7 HDYDVVIIGGGPAGLTAAIYTGRAQLS--TLILEKGM-PGGQIAWSEEVENFPGFPEPIAGMELAQRMHQQAEKFGAKVE 83 (325)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCC--EEEEESSC-TTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHHHHHTTCEEE
T ss_pred ccCCEEEECCCHHHHHHHHHHHHcCCc--EEEEeCCC-CCcccccccccccCCCCCCCCCHHHHHHHHHHHHHHcCCEEE
Confidence 358999999999999999999999987 88888872 22111100 000 0 11233455556667788899999
Q ss_pred EceEEEEecccc---c--cEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCC-----cEEEecCHHHHHhhcccCCCCCc
Q psy2951 667 KGKKIISDSELN---E--KKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-----KVFYLRTVEDANNIAPHITPESN 736 (1466)
Q Consensus 667 ~~~~v~~i~~~~---~--~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~ 736 (1466)
.++ |..+ +.. . ..+.+.++.++.||+||+|||+.|..|+++ |.+ .+++.. ... .....+++
T Consensus 84 ~~~-v~~i-~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~~i~-g~~~~~~~~~~~~~---~~~---~~~~~~~~ 154 (325)
T 2q7v_A 84 MDE-VQGV-QHDATSHPYPFTVRGYNGEYRAKAVILATGADPRKLGIP-GEDNFWGKGVSTCA---TCD---GFFYKGKK 154 (325)
T ss_dssp ECC-EEEE-EECTTSSSCCEEEEESSCEEEEEEEEECCCEEECCCCCT-TTTTTBTTTEESCH---HHH---GGGGTTCE
T ss_pred eee-EEEE-EeccCCCceEEEEECCCCEEEeCEEEECcCCCcCCCCCC-ChhhccCceEEEec---cCC---HHHcCCCE
Confidence 864 8887 443 3 467777888999999999999999988888 764 222221 111 12335899
Q ss_pred EEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHH-hcCcEEEccceEEEEEecCCCceEEEEC
Q psy2951 737 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFE-SKGVKFVMKANVSSFEKNEKNDVTAANL 815 (1466)
Q Consensus 737 vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~-~~gv~~~~~~~v~~i~~~~~~~~~~v~~ 815 (1466)
|+|||+|.+|+|+|..|++.+.+|+++++.+.+. .++. +.+.+. +.||+++++++++++.. ++++..+.+
T Consensus 155 v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~~----~~~~l~~~~gv~i~~~~~v~~i~~--~~~v~~v~~ 225 (325)
T 2q7v_A 155 VVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLR---ANKV----AQARAFANPKMKFIWDTAVEEIQG--ADSVSGVKL 225 (325)
T ss_dssp EEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCC---SCHH----HHHHHHTCTTEEEECSEEEEEEEE--SSSEEEEEE
T ss_pred EEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCC---cchH----HHHHHHhcCCceEecCCceEEEcc--CCcEEEEEE
Confidence 9999999999999999999999999999987643 2232 333444 46999999999999984 344445555
Q ss_pred C---CCc--EEecCEEEEccccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHH
Q psy2951 816 D---NGT--TIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQ 890 (1466)
Q Consensus 816 ~---~g~--~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~ 890 (1466)
. +|+ ++++|.||+|+|++|++++++.. ++++++|+|.||++++|+.|+|||+|||+..+. ..+.
T Consensus 226 ~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~-~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~----------~~~~ 294 (325)
T 2q7v_A 226 RNLKTGEVSELATDGVFIFIGHVPNTAFVKDT-VSLRDDGYVDVRDEIYTNIPMLFAAGDVSDYIY----------RQLA 294 (325)
T ss_dssp EETTTCCEEEEECSEEEECSCEEESCGGGTTT-SCBCTTSCBCCBTTTBCSSTTEEECSTTTCSSC----------CCHH
T ss_pred EECCCCcEEEEEcCEEEEccCCCCChHHHhhh-cccCCCccEecCCCCccCCCCEEEeecccCccH----------HHHH
Confidence 4 565 79999999999999999998877 888889999999999999999999999987631 2467
Q ss_pred HHHHHHHHHHHHhcc
Q psy2951 891 LAQYHGRIAALNMVE 905 (1466)
Q Consensus 891 ~A~~~g~~aA~~i~~ 905 (1466)
.|+.||+.||.+|..
T Consensus 295 ~A~~~g~~aa~~i~~ 309 (325)
T 2q7v_A 295 TSVGAGTRAAMMTER 309 (325)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999975
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-30 Score=301.96 Aligned_cols=280 Identities=17% Similarity=0.211 Sum_probs=213.0
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCC-CccEEEEcCCCCCCCCCCc---cch--hc--ccCcccccccCHhHhhhCCcEEEE
Q psy2951 596 DTFIVVGGGPSGATCVETLRQNGF-TGKLYFITDENFLPYDRVK---LSK--QL--DIKADSILLRTEEFYKDNDIHVIK 667 (1466)
Q Consensus 596 ~~vvVIGgG~AGl~aA~~l~~~g~-~~~v~~~~~~~~~~~~~~~---~~~--~~--~~~~~~~~~~~~~~~~~~gv~~~~ 667 (1466)
+||+||||||||+++|..|++.|+ + |+++|++.. +..... ... .+ .....++..++.+.+.+.+++++.
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g~~~--v~lie~~~~-gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~ 78 (311)
T 2q0l_A 2 IDCAIIGGGPAGLSAGLYATRGGVKN--AVLFEKGMP-GGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEM 78 (311)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCSS--EEEECSSST-TCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHHTTSCEEEC
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCc--EEEEcCCCC-CcccccccccccCCCCcccCCHHHHHHHHHHHHHHcCCEEEE
Confidence 689999999999999999999998 6 888888532 111100 000 00 123344555566677788999988
Q ss_pred ceEEEEecccccc--EEEccCCCEEecCEEEEcCCCCCCcCCCCCCCC-----cEEEecCHHHHHhhcccCCCCCcEEEE
Q psy2951 668 GKKIISDSELNEK--KIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-----KVFYLRTVEDANNIAPHITPESNVVVI 740 (1466)
Q Consensus 668 ~~~v~~i~~~~~~--~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~vvVv 740 (1466)
++|..+ +.... .+.+.++.++.||+||+|||+.|+.|+++ |.+ .+++....+ .....+++|+||
T Consensus 79 -~~v~~i-~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~~~~-g~~~~~~~~~~~~~~~~------~~~~~~~~v~Vv 149 (311)
T 2q0l_A 79 -TAVQRV-SKKDSHFVILAEDGKTFEAKSVIIATGGSPKRTGIK-GESEYWGKGVSTCATCD------GFFYKNKEVAVL 149 (311)
T ss_dssp -SCEEEE-EEETTEEEEEETTSCEEEEEEEEECCCEEECCCCCB-THHHHBTTTEESCHHHH------GGGGTTSEEEEE
T ss_pred -EEEEEE-EEcCCEEEEEEcCCCEEECCEEEECCCCCCCCCCCC-ChhhccCCcEEEeecCC------hhhcCCCEEEEE
Confidence 458887 54443 67677788999999999999999999888 754 233222211 123358999999
Q ss_pred CCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHH-hcCcEEEccceEEEEEecCCCceEEEECC---
Q psy2951 741 GSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFE-SKGVKFVMKANVSSFEKNEKNDVTAANLD--- 816 (1466)
Q Consensus 741 G~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~-~~gv~~~~~~~v~~i~~~~~~~~~~v~~~--- 816 (1466)
|+|++|+|+|..|++.|.+|+++++.+.+. .++. +.+.+. +.||+++++++++++... ++++..+.+.
T Consensus 150 G~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~~----~~~~l~~~~gv~v~~~~~v~~i~~~-~~~v~~v~~~~~~ 221 (311)
T 2q0l_A 150 GGGDTAVEEAIYLANICKKVYLIHRRDGFR---CAPI----TLEHAKNNDKIEFLTPYVVEEIKGD-ASGVSSLSIKNTA 221 (311)
T ss_dssp CCSHHHHHHHHHHHTTSSEEEEECSSSSCC---SCHH----HHHHHHTCTTEEEETTEEEEEEEEE-TTEEEEEEEEETT
T ss_pred CCCHHHHHHHHHHHhcCCEEEEEeeCCccC---CCHH----HHHHHhhCCCeEEEeCCEEEEEECC-CCcEeEEEEEecC
Confidence 999999999999999999999999987653 2333 344454 479999999999999843 2344445554
Q ss_pred CCc--EEecCEEEEccccccCccccccCC----ceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHH
Q psy2951 817 NGT--TIPADLVIVGIGTVLNTNYLDGKG----VELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQ 890 (1466)
Q Consensus 817 ~g~--~i~~D~vi~a~G~~p~~~~~~~~g----l~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~ 890 (1466)
+|+ ++++|.||+|+|++|++++++..+ ++++++|+|.+|++++|+.|+|||+|||+..+. ..+.
T Consensus 222 ~g~~~~i~~D~vi~a~G~~p~~~~l~~~g~~~~l~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~----------~~~~ 291 (311)
T 2q0l_A 222 TNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVDFSMKTNVQGLFAAGDIRIFAP----------KQVV 291 (311)
T ss_dssp TCCEEEEECSEEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTCBCSSTTEEECSTTBTTCC----------CCHH
T ss_pred CCceEEEecCEEEEEecCccChhhhhcccccceeEeccCCCEEeCCccccCCCCeEEcccccCcch----------HHHH
Confidence 565 789999999999999999988875 888889999999999999999999999997531 2467
Q ss_pred HHHHHHHHHHHHhcc
Q psy2951 891 LAQYHGRIAALNMVE 905 (1466)
Q Consensus 891 ~A~~~g~~aA~~i~~ 905 (1466)
.|+.||+.||.+|..
T Consensus 292 ~A~~~g~~aa~~i~~ 306 (311)
T 2q0l_A 292 CAASDGATAALSVIS 306 (311)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHH
Confidence 999999999999864
|
| >4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=302.96 Aligned_cols=292 Identities=19% Similarity=0.187 Sum_probs=201.0
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCc---cchhcccCcccccccChhhhhcCCeEEEeCce
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK---LSKQLDIKADSILLRTEEFYKDNDIHVIKGKK 118 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 118 (1466)
..|||+||||||||++||.+|+++|+++.|++.+........... +.........++.......+.+.+..+..+..
T Consensus 5 ~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~~gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (312)
T 4gcm_A 5 IDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDI 84 (312)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHHHTTCEEEECCC
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCeeecccccCCcCCccccchHHHHHHHHHHHhhccccccceee
Confidence 469999999999999999999999999888763221000000000 00000112233444445556666777766655
Q ss_pred EEEeccccccEEEecCCcEEecCEEEEccCCCCCCCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHH
Q psy2951 119 IISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA 198 (1466)
Q Consensus 119 v~~~~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A 198 (1466)
.... ..........++.++.||+||||||++|+.++ +|+.+... .+.+.....++....++|+++|||||++|+|+|
T Consensus 85 ~~~~-~~~~~~~~~~~~~~~~~d~liiAtGs~~~~~~-ipG~~~~~-~~~v~~~~~~~~~~~~~k~vvViGgG~ig~E~A 161 (312)
T 4gcm_A 85 KSVE-DKGEYKVINFGNKELTAKAVIIATGAEYKKIG-VPGEQELG-GRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEG 161 (312)
T ss_dssp CEEE-ECSSCEEEECSSCEEEEEEEEECCCEEECCCC-CTTTTTTB-TTTEESCHHHHGGGGTTCEEEEECCSHHHHHHH
T ss_pred eeee-eeecceeeccCCeEEEeceeEEcccCccCcCC-CCChhhhC-CccEEeeeccCccccCCCEEEEECCCHHHHHHH
Confidence 4432 33445566677889999999999999998654 55543210 011111112223334678999999999999999
Q ss_pred HHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCC--CeEEEE--cCCCcEEeccEE
Q psy2951 199 AFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKN--DVTAAN--LDNGTTIPADLV 274 (1466)
Q Consensus 199 ~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~--~~~~v~--~~~g~~i~~D~V 274 (1466)
..|+++|.+||++++.+.+++.. ....+.+++.++.......+..+...+.. ...... ..++..+++|.|
T Consensus 162 ~~l~~~g~~Vtlv~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 235 (312)
T 4gcm_A 162 TFLTKFADKVTIVHRRDELRAQR------ILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGV 235 (312)
T ss_dssp HHHTTTCSEEEEECSSSSCCSCH------HHHHHHHHCTTEEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEE
T ss_pred HHHHhcCCEEEEEecccccCcch------hHHHHHHHhcCcceeeecceeeeeccccccccceeeeecCCceeEEeeeeE
Confidence 99999999999999987665321 12235567788888888777766543211 111122 233457999999
Q ss_pred EEeeccccCccccccCCceecCCccEEECCCCCcCCCCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcC
Q psy2951 275 IVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVE 353 (1466)
Q Consensus 275 i~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~ 353 (1466)
++++|..|+..+++..++. +++|+|.||+++|||+|+|||+|||++.+ +.++..|+.||+.||.||..
T Consensus 236 ~~~~g~~~~~~~~~~~g~~-~~~G~I~vd~~~~Ts~pgIyA~GDv~~~~----------~~~~~~A~~~G~~AA~~i~~ 303 (312)
T 4gcm_A 236 FIYIGMKPLTAPFKDLGIT-NDVGYIVTKDDMTTSVPGIFAAGDVRDKG----------LRQIVTATGDGSIAAQSAAE 303 (312)
T ss_dssp EECSCEEESCGGGGGGTCB-CTTSCBCCCTTSBCSSTTEEECSTTBSCS----------CCSHHHHHHHHHHHHHHHHH
T ss_pred EeecCCCcCchhHHhccee-cCCCeEeeCCCCccCCCCEEEEeecCCCc----------chHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888775 56789999999999999999999998643 23567899999999999863
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-30 Score=300.86 Aligned_cols=280 Identities=17% Similarity=0.213 Sum_probs=213.9
Q ss_pred CcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCC--------CCCCCchhhccCcccccccChhhhccCCcEEEc
Q psy2951 1067 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY--------DRVKLSKQLDIKADSILLRTEEFYKDNDIHVIK 1138 (1466)
Q Consensus 1067 ~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~--------~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1138 (1466)
++|+|||||+||+++|..|++.|++ +|+|||++..-+. ..+.++.. .....+.....+++.+.+++++.
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g~~-~v~lie~~~~gg~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~v~~~~ 78 (311)
T 2q0l_A 2 IDCAIIGGGPAGLSAGLYATRGGVK-NAVLFEKGMPGGQITGSSEIENYPGVKEV--VSGLDFMQPWQEQCFRFGLKHEM 78 (311)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCS-SEEEECSSSTTCGGGGCSCBCCSTTCCSC--BCHHHHHHHHHHHHHTTSCEEEC
T ss_pred ceEEEECccHHHHHHHHHHHHCCCC-cEEEEcCCCCCcccccccccccCCCCccc--CCHHHHHHHHHHHHHHcCCEEEE
Confidence 5899999999999999999998864 8999998632110 00111100 11112222223455667999988
Q ss_pred CCeEEEeecCCCC--eEEecCCcEEecCeEEEecCCCCCcCCCCCCCC-----cEEEecCHHHHHhhhcccCCCCeEEEE
Q psy2951 1139 GKKIISDSELNEK--KIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-----KVFYLRTVEDANNIAPHITPESNVVVI 1211 (1466)
Q Consensus 1139 ~~~v~~i~d~~~~--~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~-----~v~~~~~~~~~~~l~~~~~~~~~vvVv 1211 (1466)
.+|..+ +...+ .|.+.++.++.||+||+|||+.|+.|+++ |.+ +++++++.++ ....+++|+||
T Consensus 79 -~~v~~i-~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~~~~-g~~~~~~~~~~~~~~~~~------~~~~~~~v~Vv 149 (311)
T 2q0l_A 79 -TAVQRV-SKKDSHFVILAEDGKTFEAKSVIIATGGSPKRTGIK-GESEYWGKGVSTCATCDG------FFYKNKEVAVL 149 (311)
T ss_dssp -SCEEEE-EEETTEEEEEETTSCEEEEEEEEECCCEEECCCCCB-THHHHBTTTEESCHHHHG------GGGTTSEEEEE
T ss_pred -EEEEEE-EEcCCEEEEEEcCCCEEECCEEEECCCCCCCCCCCC-ChhhccCCcEEEeecCCh------hhcCCCEEEEE
Confidence 569999 87666 67778888999999999999999998888 753 4555443322 23347999999
Q ss_pred cCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHH-hCCcEEEcCceEEEEEecCCCcEEEEEcC---
Q psy2951 1212 GSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFE-SKGVKFVMKANVSSFEKNEKNDVTAANLD--- 1287 (1466)
Q Consensus 1212 G~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~-~~gv~~~~~~~v~~i~~~~~g~~~~v~l~--- 1287 (1466)
|+|.+|+|+|..|++.|.+|+++++.+.+. ..+. +.+.+. +.||+++++++++++. .+++++..|.+.
T Consensus 150 G~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~~----~~~~l~~~~gv~v~~~~~v~~i~-~~~~~v~~v~~~~~~ 221 (311)
T 2q0l_A 150 GGGDTAVEEAIYLANICKKVYLIHRRDGFR---CAPI----TLEHAKNNDKIEFLTPYVVEEIK-GDASGVSSLSIKNTA 221 (311)
T ss_dssp CCSHHHHHHHHHHHTTSSEEEEECSSSSCC---SCHH----HHHHHHTCTTEEEETTEEEEEEE-EETTEEEEEEEEETT
T ss_pred CCCHHHHHHHHHHHhcCCEEEEEeeCCccC---CCHH----HHHHHhhCCCeEEEeCCEEEEEE-CCCCcEeEEEEEecC
Confidence 999999999999999999999999987653 2333 333344 5799999999999998 343455556665
Q ss_pred CCC--eeecCEEEEeeccccCccccccCC----ceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHH
Q psy2951 1288 NGT--TIPADLVIVGIGTVLNTNYLDGKG----VELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQ 1361 (1466)
Q Consensus 1288 ~g~--~i~~D~vv~a~G~~p~~~~~~~~g----l~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~ 1361 (1466)
+|+ ++++|.||+++|..|++++++..| +.++.+|+|.||++++|+.|+|||+|||+..+. ..+.
T Consensus 222 ~g~~~~i~~D~vi~a~G~~p~~~~l~~~g~~~~l~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~----------~~~~ 291 (311)
T 2q0l_A 222 TNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVDFSMKTNVQGLFAAGDIRIFAP----------KQVV 291 (311)
T ss_dssp TCCEEEEECSEEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTCBCSSTTEEECSTTBTTCC----------CCHH
T ss_pred CCceEEEecCEEEEEecCccChhhhhcccccceeEeccCCCEEeCCccccCCCCeEEcccccCcch----------HHHH
Confidence 675 789999999999999999998875 888888999999999999999999999998632 1358
Q ss_pred HHHHHHHHHHHHhcC
Q psy2951 1362 LAQYHGRIAALNMVE 1376 (1466)
Q Consensus 1362 ~A~~qa~~aa~~i~g 1376 (1466)
.|..||+.||.||+.
T Consensus 292 ~A~~~g~~aa~~i~~ 306 (311)
T 2q0l_A 292 CAASDGATAALSVIS 306 (311)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHH
Confidence 999999999999864
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-30 Score=299.45 Aligned_cols=273 Identities=16% Similarity=0.209 Sum_probs=212.4
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhc----cCcccccccChhhhccC-CcEEEcCC
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD----IKADSILLRTEEFYKDN-DIHVIKGK 1140 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~-~v~~~~~~ 1140 (1466)
+++|+|||||+||+++|..|++.|+ +|+|||+++...... .....+. .....+.....+.+.+. +++++.+
T Consensus 2 ~~~vvIIG~G~aGl~aA~~l~~~g~--~v~lie~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~- 77 (297)
T 3fbs_A 2 KFDVIIIGGSYAGLSAALQLGRARK--NILLVDAGERRNRFA-SHSHGFLGQDGKAPGEIIAEARRQIERYPTIHWVEG- 77 (297)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTC--CEEEEECCCCGGGGC-SCCCSSTTCTTCCHHHHHHHHHHHHTTCTTEEEEES-
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCC--CEEEEeCCCcccccc-hhhcCCcCCCCCCHHHHHHHHHHHHHhcCCeEEEEe-
Confidence 3689999999999999999999998 999999875321110 0111110 11222222233445555 7888766
Q ss_pred eEEEeecCCC--CeEEecCCcEEecCeEEEecCCCCCcCCCCCCCC-----cEEEecCHHHHHhhhcccCCCCeEEEEcC
Q psy2951 1141 KIISDSELNE--KKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-----KVFYLRTVEDANNIAPHITPESNVVVIGS 1213 (1466)
Q Consensus 1141 ~v~~i~d~~~--~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~-----~v~~~~~~~~~~~l~~~~~~~~~vvVvG~ 1213 (1466)
+|+.+ +... ..|.++++.++.||+||+|||+.|+.|++| |.+ ++++.. ..+... ..+++++|||+
T Consensus 78 ~v~~i-~~~~~~~~v~~~~g~~~~~d~vviAtG~~~~~~~~~-g~~~~~~~~~~~~~-~~~~~~-----~~~~~v~vvG~ 149 (297)
T 3fbs_A 78 RVTDA-KGSFGEFIVEIDGGRRETAGRLILAMGVTDELPEIA-GLRERWGSAVFHCP-YCHGYE-----LDQGKIGVIAA 149 (297)
T ss_dssp CEEEE-EEETTEEEEEETTSCEEEEEEEEECCCCEEECCCCB-TTGGGBTTTEESCH-HHHTGG-----GTTCEEEEECC
T ss_pred EEEEE-EEcCCeEEEEECCCCEEEcCEEEECCCCCCCCCCCC-CchhhcCCeeEEcc-cCcchh-----hcCCEEEEEec
Confidence 59999 7664 478888898999999999999999998888 865 344332 222211 23899999999
Q ss_pred CHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeee
Q psy2951 1214 SFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIP 1293 (1466)
Q Consensus 1214 g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~ 1293 (1466)
|.+|+|+|..|++.| +|+++.+.+..+ .+.+.+.+++.||+++. +++++++ .+ + .|.+.+|++++
T Consensus 150 G~~~~e~a~~l~~~g-~v~~v~~~~~~~--------~~~~~~~l~~~gv~i~~-~~v~~i~-~~-~---~v~~~~g~~~~ 214 (297)
T 3fbs_A 150 SPMAIHHALMLPDWG-ETTFFTNGIVEP--------DADQHALLAARGVRVET-TRIREIA-GH-A---DVVLADGRSIA 214 (297)
T ss_dssp STTHHHHHHHGGGTS-EEEEECTTTCCC--------CHHHHHHHHHTTCEEEC-SCEEEEE-TT-E---EEEETTSCEEE
T ss_pred CccHHHHHHHhhhcC-cEEEEECCCCCC--------CHHHHHHHHHCCcEEEc-ceeeeee-cC-C---eEEeCCCCEEE
Confidence 999999999999999 999999887522 23466788899999996 8999998 32 2 58899999999
Q ss_pred cCEEEEeeccccCccccccCCceee--CCC-eEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHH
Q psy2951 1294 ADLVIVGIGTVLNTNYLDGKGVELN--GQK-AVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIA 1370 (1466)
Q Consensus 1294 ~D~vv~a~G~~p~~~~~~~~gl~~~--~~G-~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~a 1370 (1466)
+|.||+++|..|++++++..|+..+ .+| ++.||++++|+.|+|||+|||+..|.. +..|..||+.|
T Consensus 215 ~D~vi~a~G~~p~~~~~~~~g~~~~~~~~G~~i~vd~~~~t~~~~vya~GD~~~~~~~-----------~~~A~~~g~~a 283 (297)
T 3fbs_A 215 LAGLFTQPKLRITVDWIEKLGCAVEEGPMGSTIVTDPMKQTTARGIFACGDVARPAGS-----------VALAVGDGAMA 283 (297)
T ss_dssp ESEEEECCEEECCCSCHHHHTCCEEEETTEEEECCCTTCBCSSTTEEECSGGGCTTCC-----------HHHHHHHHHHH
T ss_pred EEEEEEccCcccCchhHHhcCCccccCCCCceEEeCCCCccCCCCEEEEeecCCchHH-----------HHHHHHhHHHH
Confidence 9999999999999999999898887 357 899999999999999999999987554 38999999999
Q ss_pred HHHhcC
Q psy2951 1371 ALNMVE 1376 (1466)
Q Consensus 1371 a~~i~g 1376 (1466)
|.+|+.
T Consensus 284 a~~i~~ 289 (297)
T 3fbs_A 284 GAAAHR 289 (297)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999863
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-30 Score=301.95 Aligned_cols=281 Identities=20% Similarity=0.266 Sum_probs=212.9
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCc------cchhcccCcccccccCHhHhhhCCcEEEE
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK------LSKQLDIKADSILLRTEEFYKDNDIHVIK 667 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~gv~~~~ 667 (1466)
..+||+||||||||+++|+.|+++|++ |+++|+.. .++.... ..........++..++.+.+++.+++++.
T Consensus 15 ~~~dvvIIG~G~aGl~aA~~l~~~g~~--v~lie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 91 (319)
T 3cty_A 15 RDFDVVIVGAGAAGFSAAVYAARSGFS--VAILDKAV-AGGLTAEAPLVENYLGFKSIVGSELAKLFADHAANYAKIREG 91 (319)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCC--EEEEESSS-TTGGGGGCSCBCCBTTBSSBCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCc--EEEEeCCC-CCccccccchhhhcCCCcccCHHHHHHHHHHHHHHcCCEEEE
Confidence 357999999999999999999999987 88888743 2211100 00000112234445555667778999988
Q ss_pred ceEEEEecccccc--EEEccCCCEEecCEEEEcCCCCCCcCCCCCCCC-----cEEEecCHHHHHhhcccCCCCCcEEEE
Q psy2951 668 GKKIISDSELNEK--KIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-----KVFYLRTVEDANNIAPHITPESNVVVI 740 (1466)
Q Consensus 668 ~~~v~~i~~~~~~--~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~vvVv 740 (1466)
+ +|..+ +.... .+.+ ++.++.||+||+|||+.|+.|+++ |.+ .+++....+ .....+++++||
T Consensus 92 ~-~v~~i-~~~~~~~~v~~-~~~~~~~~~li~AtG~~~~~~~i~-g~~~~~~~~~~~~~~~~------~~~~~~~~v~vi 161 (319)
T 3cty_A 92 V-EVRSI-KKTQGGFDIET-NDDTYHAKYVIITTGTTHKHLGVK-GESEYFGKGTSYCSTCD------GYLFKGKRVVTI 161 (319)
T ss_dssp C-CEEEE-EEETTEEEEEE-SSSEEEEEEEEECCCEEECCCCCB-TTTTTBTTTEESCHHHH------GGGGBTSEEEEE
T ss_pred e-eEEEE-EEeCCEEEEEE-CCCEEEeCEEEECCCCCcccCCCC-ChHHhCCceEEEEEecc------hhhcCCCeEEEE
Confidence 4 48887 54333 4555 567899999999999999988888 754 232222111 122347999999
Q ss_pred CCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECC---C
Q psy2951 741 GSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLD---N 817 (1466)
Q Consensus 741 G~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~---~ 817 (1466)
|+|++|+|+|..|++.+.+|+++++.+.+.. ++ .+.+.+.+.||+++++++++++..+ ++++..+.+. +
T Consensus 162 G~G~~g~e~a~~l~~~g~~V~~i~~~~~~~~---~~----~l~~~l~~~gv~i~~~~~v~~i~~~-~~~v~~v~~~~~~~ 233 (319)
T 3cty_A 162 GGGNSGAIAAISMSEYVKNVTIIEYMPKYMC---EN----AYVQEIKKRNIPYIMNAQVTEIVGD-GKKVTGVKYKDRTT 233 (319)
T ss_dssp CCSHHHHHHHHHHTTTBSEEEEECSSSSCCS---CH----HHHHHHHHTTCCEECSEEEEEEEES-SSSEEEEEEEETTT
T ss_pred CCCHHHHHHHHHHHhhCCcEEEEEcCCccCC---CH----HHHHHHhcCCcEEEcCCeEEEEecC-CceEEEEEEEEcCC
Confidence 9999999999999999999999999876531 22 3455667899999999999999843 3445455553 5
Q ss_pred Cc--EEecCEEEEccccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHH
Q psy2951 818 GT--TIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYH 895 (1466)
Q Consensus 818 g~--~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~ 895 (1466)
|+ ++++|.||+|+|++|++++++..|++++++|+|.||++++|+.|+|||+|||+..+. ..+..|+.|
T Consensus 234 g~~~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~----------~~~~~A~~~ 303 (319)
T 3cty_A 234 GEEKLIETDGVFIYVGLIPQTSFLKDSGVKLDERGYIVVDSRQRTSVPGVYAAGDVTSGNF----------AQIASAVGD 303 (319)
T ss_dssp CCEEEECCSEEEECCCEEECCGGGTTSCCCBCTTSCBCCCTTCBCSSTTEEECSTTBTTCC----------CCHHHHHHH
T ss_pred CceEEEecCEEEEeeCCccChHHHhhccccccCCccEeCCCCCccCCCCEEEeecccCcch----------hhHHHHHHH
Confidence 65 699999999999999999999889999999999999999999999999999997642 245789999
Q ss_pred HHHHHHHhcc
Q psy2951 896 GRIAALNMVE 905 (1466)
Q Consensus 896 g~~aA~~i~~ 905 (1466)
|+.||.+|..
T Consensus 304 g~~aa~~i~~ 313 (319)
T 3cty_A 304 GCKAALSLYS 313 (319)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999964
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-30 Score=300.10 Aligned_cols=280 Identities=20% Similarity=0.279 Sum_probs=214.1
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCC---CCchh--hc-cCcccccccChhhhccCCcEEEcC
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV---KLSKQ--LD-IKADSILLRTEEFYKDNDIHVIKG 1139 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~---~l~~~--~~-~~~~~~~~~~~~~~~~~~v~~~~~ 1139 (1466)
.++|+|||||+||+++|..|++.|+ +|+|||+.. .+.... .+... +. .....+.....+.+++.+++++.
T Consensus 16 ~~dvvIIG~G~aGl~aA~~l~~~g~--~v~lie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~- 91 (319)
T 3cty_A 16 DFDVVIVGAGAAGFSAAVYAARSGF--SVAILDKAV-AGGLTAEAPLVENYLGFKSIVGSELAKLFADHAANYAKIREG- 91 (319)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTC--CEEEEESSS-TTGGGGGCSCBCCBTTBSSBCHHHHHHHHHHHHHTTSEEEET-
T ss_pred CCcEEEECcCHHHHHHHHHHHhCCC--cEEEEeCCC-CCccccccchhhhcCCCcccCHHHHHHHHHHHHHHcCCEEEE-
Confidence 4689999999999999999999998 999999853 211000 00000 00 01111212223455667999988
Q ss_pred CeEEEeecCCCC--eEEecCCcEEecCeEEEecCCCCCcCCCCCCCC-----cEEEecCHHHHHhhhcccCCCCeEEEEc
Q psy2951 1140 KKIISDSELNEK--KIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-----KVFYLRTVEDANNIAPHITPESNVVVIG 1212 (1466)
Q Consensus 1140 ~~v~~i~d~~~~--~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~-----~v~~~~~~~~~~~l~~~~~~~~~vvVvG 1212 (1466)
.+|..+ +...+ .|.+ ++.++.||+||+|||+.|+.++++ |.+ ++++..+.++ ....+++++|||
T Consensus 92 ~~v~~i-~~~~~~~~v~~-~~~~~~~~~li~AtG~~~~~~~i~-g~~~~~~~~~~~~~~~~~------~~~~~~~v~viG 162 (319)
T 3cty_A 92 VEVRSI-KKTQGGFDIET-NDDTYHAKYVIITTGTTHKHLGVK-GESEYFGKGTSYCSTCDG------YLFKGKRVVTIG 162 (319)
T ss_dssp CCEEEE-EEETTEEEEEE-SSSEEEEEEEEECCCEEECCCCCB-TTTTTBTTTEESCHHHHG------GGGBTSEEEEEC
T ss_pred eeEEEE-EEeCCEEEEEE-CCCEEEeCEEEECCCCCcccCCCC-ChHHhCCceEEEEEecch------hhcCCCeEEEEC
Confidence 569999 86555 4655 667899999999999999998888 764 4554432222 123479999999
Q ss_pred CCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcC---CC
Q psy2951 1213 SSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLD---NG 1289 (1466)
Q Consensus 1213 ~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~---~g 1289 (1466)
+|.+|+|+|..|++.+.+|+++++.+.+.. .+ .+.+.+++.||+++++++++++. .+++++..|.+. +|
T Consensus 163 ~G~~g~e~a~~l~~~g~~V~~i~~~~~~~~---~~----~l~~~l~~~gv~i~~~~~v~~i~-~~~~~v~~v~~~~~~~g 234 (319)
T 3cty_A 163 GGNSGAIAAISMSEYVKNVTIIEYMPKYMC---EN----AYVQEIKKRNIPYIMNAQVTEIV-GDGKKVTGVKYKDRTTG 234 (319)
T ss_dssp CSHHHHHHHHHHTTTBSEEEEECSSSSCCS---CH----HHHHHHHHTTCCEECSEEEEEEE-ESSSSEEEEEEEETTTC
T ss_pred CCHHHHHHHHHHHhhCCcEEEEEcCCccCC---CH----HHHHHHhcCCcEEEcCCeEEEEe-cCCceEEEEEEEEcCCC
Confidence 999999999999999999999999875432 22 34556668999999999999998 444556667664 67
Q ss_pred C--eeecCEEEEeeccccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHH
Q psy2951 1290 T--TIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHG 1367 (1466)
Q Consensus 1290 ~--~i~~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa 1367 (1466)
+ ++++|.||+|+|..|++++++..|+.++++|+|.||++++|+.|+|||+|||+..+.. .+..|..||
T Consensus 235 ~~~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~----------~~~~A~~~g 304 (319)
T 3cty_A 235 EEKLIETDGVFIYVGLIPQTSFLKDSGVKLDERGYIVVDSRQRTSVPGVYAAGDVTSGNFA----------QIASAVGDG 304 (319)
T ss_dssp CEEEECCSEEEECCCEEECCGGGTTSCCCBCTTSCBCCCTTCBCSSTTEEECSTTBTTCCC----------CHHHHHHHH
T ss_pred ceEEEecCEEEEeeCCccChHHHhhccccccCCccEeCCCCCccCCCCEEEeecccCcchh----------hHHHHHHHH
Confidence 5 6899999999999999999999999998889999999999999999999999986421 358899999
Q ss_pred HHHHHHhcC
Q psy2951 1368 RIAALNMVE 1376 (1466)
Q Consensus 1368 ~~aa~~i~g 1376 (1466)
+.||.||+.
T Consensus 305 ~~aa~~i~~ 313 (319)
T 3cty_A 305 CKAALSLYS 313 (319)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999874
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=305.93 Aligned_cols=283 Identities=17% Similarity=0.181 Sum_probs=218.4
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCC------c---cchhcccCcccccccCHhHhhhCCcEE
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV------K---LSKQLDIKADSILLRTEEFYKDNDIHV 665 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~------~---~~~~~~~~~~~~~~~~~~~~~~~gv~~ 665 (1466)
.++|+|||||+||+++|+.|++.|++ |+++|+++.+++... . ..........++..++.+.+.+.++++
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~~g~~--v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (332)
T 3lzw_A 7 VYDITIIGGGPVGLFTAFYGGMRQAS--VKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTI 84 (332)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCC--EEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCEE
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCC--EEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCcE
Confidence 47999999999999999999999987 899999875442210 0 000011234556666777788889999
Q ss_pred EEceEEEEecccccc---EEEccCCCEEecCEEEEcCCC---CCCcCCCCCCCCc----EEEecCHHHHHhhcccCCCCC
Q psy2951 666 IKGKKIISDSELNEK---KIKLQDGTSIDFTKIYLATGS---SPRTISQADGVNK----VFYLRTVEDANNIAPHITPES 735 (1466)
Q Consensus 666 ~~~~~v~~i~~~~~~---~v~~~~~~~~~~d~lviAtG~---~~~~~~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~ 735 (1466)
+++++|..+ +.... .+.+.+++ +.||+||+|||+ .|+.|+++ |.+. .... ...+... .+++
T Consensus 85 ~~~~~v~~i-~~~~~~~~~v~~~~g~-~~~d~vVlAtG~~~~~p~~~~~~-g~~~~~g~~~~~-~~~~~~~-----~~~~ 155 (332)
T 3lzw_A 85 CLEQAVESV-EKQADGVFKLVTNEET-HYSKTVIITAGNGAFKPRKLELE-NAEQYEGKNLHY-FVDDLQK-----FAGR 155 (332)
T ss_dssp ECSCCEEEE-EECTTSCEEEEESSEE-EEEEEEEECCTTSCCEECCCCCT-TGGGGBTTTEES-SCSCGGG-----GBTC
T ss_pred EccCEEEEE-EECCCCcEEEEECCCE-EEeCEEEECCCCCcCCCCCCCCC-ChhhccCceEEE-ecCCHHH-----cCCC
Confidence 999989998 55543 77776665 999999999999 88888888 7652 1211 2222211 1389
Q ss_pred cEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEEC
Q psy2951 736 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANL 815 (1466)
Q Consensus 736 ~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~ 815 (1466)
+++|||+|.+|+|+|..|++.+.+|+++++.+.+.. .+. ..+.+++.||++++++++.+++..++ ...+.+
T Consensus 156 ~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~--~~~-----~~~~l~~~gv~~~~~~~v~~i~~~~~--~~~v~~ 226 (332)
T 3lzw_A 156 RVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRA--HEH-----SVENLHASKVNVLTPFVPAELIGEDK--IEQLVL 226 (332)
T ss_dssp EEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSS--CHH-----HHHHHHHSSCEEETTEEEEEEECSSS--CCEEEE
T ss_pred EEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCc--cHH-----HHHHHhcCCeEEEeCceeeEEecCCc--eEEEEE
Confidence 999999999999999999999999999999886532 111 23457889999999999999984322 334555
Q ss_pred CC-----CcEEecCEEEEccccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHH
Q psy2951 816 DN-----GTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQ 890 (1466)
Q Consensus 816 ~~-----g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~ 890 (1466)
.+ ++++++|.||+|+|++|++++++.++++. ++|+|.+|++++|+.|+|||+|||+..+.. +..+.
T Consensus 227 ~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~--------~~~~~ 297 (332)
T 3lzw_A 227 EEVKGDRKEILEIDDLIVNYGFVSSLGPIKNWGLDI-EKNSIVVKSTMETNIEGFFAAGDICTYEGK--------VNLIA 297 (332)
T ss_dssp EETTSCCEEEEECSEEEECCCEECCCGGGGGSSCCE-ETTEEECCTTSBCSSTTEEECGGGEECTTC--------CCCHH
T ss_pred EecCCCceEEEECCEEEEeeccCCCchHHhhcCccc-cCCeEEeCCCCceecCCEEEccceecCCCC--------cceEe
Confidence 44 45799999999999999999999999988 678999999999999999999999975432 23668
Q ss_pred HHHHHHHHHHHHhccC
Q psy2951 891 LAQYHGRIAALNMVEK 906 (1466)
Q Consensus 891 ~A~~~g~~aA~~i~~~ 906 (1466)
.|..||+.||.+|+..
T Consensus 298 ~A~~~g~~aa~~i~~~ 313 (332)
T 3lzw_A 298 SGFGEAPTAVNNAKAY 313 (332)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eehhhHHHHHHHHHHh
Confidence 9999999999999753
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-31 Score=353.87 Aligned_cols=308 Identities=19% Similarity=0.300 Sum_probs=229.6
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCC----CCCCchhhccCcccccccChhhhccCCcEEEcCC
Q psy2951 1065 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD----RVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGK 1140 (1466)
Q Consensus 1065 ~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 1140 (1466)
..++|+|||||+||++||..|++.|+. +|+|||+++.+++. .|... ....+.....+++++.||+++.++
T Consensus 186 ~~~~VvVIGgGpAGl~aA~~L~~~G~~-~Vtv~E~~~~~GG~~~~~ip~~~-----~~~~~~~~~~~~~~~~gv~~~~~~ 259 (1025)
T 1gte_A 186 YSAKIALLGAGPASISCASFLARLGYS-DITIFEKQEYVGGLSTSEIPQFR-----LPYDVVNFEIELMKDLGVKIICGK 259 (1025)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHTTCC-CEEEEESSSSCSTHHHHTSCTTT-----SCHHHHHHHHHHHHTTTCEEEESC
T ss_pred CCCEEEEECccHHHHHHHHHHHhcCCC-cEEEEeCCCCCCccccccCCccc-----CCHHHHHHHHHHHHHCCcEEEccc
Confidence 357899999999999999999999984 69999998765432 11100 011111222356778899999998
Q ss_pred eEEEeecCCCCeEEecCCcEEecCeEEEecCC-CCCcCCCCCCCC---cEEEecCHH----HHHh-----hhccc-CCCC
Q psy2951 1141 KIISDSELNEKKIKLQDGTSIDFTKIYLATGS-SPRTISQADGVN---KVFYLRTVE----DANN-----IAPHI-TPES 1206 (1466)
Q Consensus 1141 ~v~~i~d~~~~~v~~~~g~~~~yd~lvlAtG~-~~~~~~~~~g~~---~v~~~~~~~----~~~~-----l~~~~-~~~~ 1206 (1466)
.+. .+.++++++..+.||+||||||+ .|+.+++++|++ ++++..++. ++.+ ++..+ ..++
T Consensus 260 ~v~------~~~v~~~~~~~~~~d~vvlAtGa~~p~~l~~~~G~~~~~gv~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~ 333 (1025)
T 1gte_A 260 SLS------ENEITLNTLKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRG 333 (1025)
T ss_dssp CBS------TTSBCHHHHHHTTCCEEEECCCCCEECCCGGGTTCCTTTTEEEHHHHHHHHHHHHCBTTBSCCCCCCCCCS
T ss_pred Eec------cceEEhhhcCccCCCEEEEecCCCCCCCCCCCCCCCCCCCEEEhHHHHHHHHhhcccccccccccccccCC
Confidence 431 13466666666889999999999 588776532553 677643222 1111 11111 2367
Q ss_pred eEEEEcCCHHHHHHHHHHhcCCC-eEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEE
Q psy2951 1207 NVVVIGSSFIGMEAAAFCASKVK-SVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAAN 1285 (1466)
Q Consensus 1207 ~vvVvG~g~~g~e~a~~l~~~g~-~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~ 1285 (1466)
+|+|||+|++|+|+|..+++.|. +||++++.++.+.+.+++++ +.+++.||+|+++..+.++. .+++++..|+
T Consensus 334 ~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~~~~~~~~~e~-----~~~~~~Gv~~~~~~~~~~i~-~~~g~v~~v~ 407 (1025)
T 1gte_A 334 AVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEV-----ELAKEEKCEFLPFLSPRKVI-VKGGRIVAVQ 407 (1025)
T ss_dssp EEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCCSCHHHH-----HHHHHTTCEEECSEEEEEEE-EETTEEEEEE
T ss_pred cEEEECCChHHHHHHHHHHHcCCCEEEEEEecChhhCCCCHHHH-----HHHHHcCCEEEeCCCceEEE-ccCCeEEEEE
Confidence 99999999999999999999996 89999998854433444443 45778999999999999997 4456666665
Q ss_pred cC------CC---------CeeecCEEEEeeccccC-cccccc-CCceeeCCCeEEeCC-CccccCCCEEEecccccCCC
Q psy2951 1286 LD------NG---------TTIPADLVIVGIGTVLN-TNYLDG-KGVELNGQKAVVVNE-YLETNVPGVYAGGDIAYAPL 1347 (1466)
Q Consensus 1286 l~------~g---------~~i~~D~vv~a~G~~p~-~~~~~~-~gl~~~~~G~i~vd~-~~~t~~~~v~a~GD~a~~p~ 1347 (1466)
+. +| .++++|.||+|+|..|+ ..|+.. .|+.++.+|+|.||+ +++|+.|+|||+|||+..|.
T Consensus 408 ~~~~~~~~~g~~~~~~g~~~~i~aD~Vi~A~G~~~~~~~l~~~~~gl~~~~~G~I~vd~~~~~Ts~~~VfA~GD~~~~~~ 487 (1025)
T 1gte_A 408 FVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMAN 487 (1025)
T ss_dssp EEEEEECTTSCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBCSSTTEEECSGGGCSCC
T ss_pred EEEeEEcCCCCcccCCCceEEEECCEEEECCCCCCCchhhhhcccCceECCCCCEEECCCCCccCCCCEEEeCCCCCCch
Confidence 53 33 36899999999999764 567766 589999889999996 89999999999999998765
Q ss_pred ccCCCceeeeecHHHHHHHHHHHHHHhcC-------CC-CCCCCCcccee--ccccccEEEEee
Q psy2951 1348 HSFYNKNASIGHYQLAQYHGRIAALNMVE-------KK-TSLSTIPFFWT--MLFGVGFRFAGY 1401 (1466)
Q Consensus 1348 ~~~~~~~~~~~~~~~A~~qa~~aa~~i~g-------~~-~~~~~~p~~w~--~~~~~~~~~~g~ 1401 (1466)
.. ..|..||+.||.+|.+ .. ..+..+||||+ ++++.++++.|.
T Consensus 488 ~~-----------~~A~~~G~~aA~~i~~~L~~~~~~~~~~~~~~p~~~~ev~~v~ls~~~~G~ 540 (1025)
T 1gte_A 488 TT-----------VESVNDGKQASWYIHKYIQAQYGASVSAKPELPLFYTPVDLVDISVEMAGL 540 (1025)
T ss_dssp CH-----------HHHHHHHHHHHHHHHHHHHHHTTCCCCSSCCBCCCCCGGGGCCCCEEETTE
T ss_pred HH-----------HHHHHHHHHHHHHHHHHHHhccCCCcccCcCccccccccccccceeeeccc
Confidence 43 6799999999999984 22 25678999999 799999999886
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-30 Score=313.87 Aligned_cols=287 Identities=18% Similarity=0.239 Sum_probs=232.7
Q ss_pred CCcEEEECCchHHHHHHHHHHh---cCCCCcEEEEcCCCCCCCCCCCCchhhc--cCcccccccChhhhccCCcEEEcCC
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQ---NGFTGKLYFITDENFLPYDRVKLSKQLD--IKADSILLRTEEFYKDNDIHVIKGK 1140 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~---~g~~~~i~li~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~ 1140 (1466)
|++|||||||+||+++|..|++ .|. +|+|||+++++.|.. .+..... ...+++.....+++.+.+++++.+
T Consensus 1 m~~VvIIGgG~aGl~aA~~L~~~~~~g~--~V~vie~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~- 76 (409)
T 3h8l_A 1 MTKVLVLGGRFGALTAAYTLKRLVGSKA--DVKVINKSRFSYFRP-ALPHVAIGVRDVDELKVDLSEALPEKGIQFQEG- 76 (409)
T ss_dssp -CEEEEECSSHHHHHHHHHHHHHHGGGS--EEEEEESSSEEEECC-SSCCCCSSCCCCCCEEEEHHHHTGGGTCEEEEC-
T ss_pred CCeEEEECCCHHHHHHHHHHHhhCCCCC--eEEEEeCCCCceecc-chhhcccCCcCHHHHHHHHHHHHhhCCeEEEEe-
Confidence 3689999999999999999999 777 999999998765543 2222221 234444455556777889999988
Q ss_pred eEEEeecCCCCeEEecCCcE----EecCeEEEecCCCCCcCCCCCCCC-cEEEecCHHHHHhhhcccCC-CCeEEEEcCC
Q psy2951 1141 KIISDSELNEKKIKLQDGTS----IDFTKIYLATGSSPRTISQADGVN-KVFYLRTVEDANNIAPHITP-ESNVVVIGSS 1214 (1466)
Q Consensus 1141 ~v~~i~d~~~~~v~~~~g~~----~~yd~lvlAtG~~~~~~~~~~g~~-~v~~~~~~~~~~~l~~~~~~-~~~vvVvG~g 1214 (1466)
+|+.+ +++.+.|.+.++.. +.||+||+|||++|+.+++| |++ ..+.+.+.+++.++++.+.. .++++|||+|
T Consensus 77 ~v~~i-~~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~~~~~ip-G~~~~~~~~~~~~~~~~~~~~l~~~~~~~vViG~G 154 (409)
T 3h8l_A 77 TVEKI-DAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATELVK-GWDKYGYSVCEPEFATKLREKLESFQGGNIAIGSG 154 (409)
T ss_dssp EEEEE-ETTTTEEEEECTTSCEEEEECSEEEECCCCEECGGGSB-THHHHCEESSSTTHHHHHHHHHHHCCSEEEEEEEC
T ss_pred eEEEE-eCCCCEEEEccCCcccceeeCCEEEECCCCCcCccCCC-ChhhcCcCcCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 69999 99999999988864 99999999999999998898 877 56677788888888776543 2677899999
Q ss_pred H-------------------------HHHHHH----HHHhcCCC----eEEEEcCCCcCCcccccHHHHHHHHHHHHhCC
Q psy2951 1215 F-------------------------IGMEAA----AFCASKVK----SVTVVGRGAVPFQESLGKEVGERITKLFESKG 1261 (1466)
Q Consensus 1215 ~-------------------------~g~e~a----~~l~~~g~----~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~g 1261 (1466)
. +++|+| ..+++.|. +|+++++.+ .++ .+++.+.+.+.+.++++|
T Consensus 155 ~f~~~~~~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~~l~~~g~~~~~~v~~~~~~~-~l~-~~~~~~~~~~~~~l~~~g 232 (409)
T 3h8l_A 155 PFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGE-YLS-DLSPNSRKAVASIYNQLG 232 (409)
T ss_dssp CBCCCCSSCCBSCTTSSCCCSCSSCHHHHHHHHHHHHHHHTTTCTTTEEEEEECSSS-SST-TBCHHHHHHHHHHHHHHT
T ss_pred ccccCCCccccccccccCCCCcccCCHHHHHHHHHHHHHHHcCCCCCeEEEEEeCCc-ccc-ccCHHHHHHHHHHHHHCC
Confidence 2 466766 56667774 899999987 443 677899999999999999
Q ss_pred cEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccCccccccC--CceeeCCCeEEeCCCccc-cCCCEEE
Q psy2951 1262 VKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGK--GVELNGQKAVVVNEYLET-NVPGVYA 1338 (1466)
Q Consensus 1262 v~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~~~~~~~~--gl~~~~~G~i~vd~~~~t-~~~~v~a 1338 (1466)
|+++++++|++++ . + .|.+.||+++++|+||+++|..|+ ++++.+ ++ .+.+|++.||+++|| ++|||||
T Consensus 233 V~~~~~~~v~~i~-~-~----~v~~~~g~~~~~D~vi~a~G~~~~-~~l~~~~~~l-~~~~G~i~vd~~~~~~~~~~vfa 304 (409)
T 3h8l_A 233 IKLVHNFKIKEIR-E-H----EIVDEKGNTIPADITILLPPYTGN-PALKNSTPDL-VDDGGFIPTDLNMVSIKYDNVYA 304 (409)
T ss_dssp CEEECSCCEEEEC-S-S----EEEETTSCEEECSEEEEECCEECC-HHHHTSCGGG-SCTTSCBCBBTTSBBSSCTTEEE
T ss_pred CEEEcCCceEEEC-C-C----eEEECCCCEEeeeEEEECCCCCcc-HHHHhccccC-cCCCCCEEeCcccccCCCCCEEE
Confidence 9999999999997 3 2 278899999999999999999998 577777 44 356789999999999 7999999
Q ss_pred ecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCC
Q psy2951 1339 GGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEK 1377 (1466)
Q Consensus 1339 ~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~ 1377 (1466)
+|||+..+.+. .+..|..||+.||+||++.
T Consensus 305 ~GD~~~~~~~~---------~~~~A~~q~~~aa~~i~~~ 334 (409)
T 3h8l_A 305 VGDANSMTVPK---------LGYLAVMTGRIAAQHLANR 334 (409)
T ss_dssp CGGGBTTCCSC---------CHHHHHHHHHHHHHHHHHH
T ss_pred eehhccCCCCc---------HHHHHHHHHHHHHHHHHHH
Confidence 99999875443 2378999999999999863
|
| >4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=303.53 Aligned_cols=290 Identities=17% Similarity=0.213 Sum_probs=207.3
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCC-CCCCCCccchhc--------ccCcccccccChhhhhcCCeE
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENF-LPYDRVKLSKQL--------DIKADSILLRTEEFYKDNDIH 112 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~-~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~v~ 112 (1466)
+++||+||||||||++||.+|+++|+++.|++...... .++...+....+ .....++..+..+.+++.++.
T Consensus 3 ~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~~~~~~~~~~~~ 82 (314)
T 4a5l_A 3 NIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEKYGTT 82 (314)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCE
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHHHHHHHhhcCcE
Confidence 35899999999999999999999999998875432110 111111111000 112334555666677788888
Q ss_pred EEeCceEEEeccccccEEEecCCcEEecCEEEEccCCCCCCCCCCCCCCcE--EEecCHHHHHhhcccCCCCCcEEEECC
Q psy2951 113 VIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKV--FYLRTVEDANNIAPHITPESNVVVIGS 190 (1466)
Q Consensus 113 ~~~~~~v~~~~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~vvVvGg 190 (1466)
+...+............+.+.++.++.||+||||||++|+.++ +++.+.. ............ ....++++++|||+
T Consensus 83 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~~~~~~~-ipG~~~~~~~~~~~~~~~~~~-~~~~~~~~vvViGg 160 (314)
T 4a5l_A 83 IITETIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGATAKRMH-VPGEDKYWQNGVSACAICDGA-VPIFRNKVLMVVGG 160 (314)
T ss_dssp EECCCEEEEECSSSSEEEEETTCCEEEEEEEEECCCEEECCCC-CTTHHHHBTTTEESCHHHHTT-SGGGTTSEEEEECS
T ss_pred EEEeEEEEeecCCCceEEEECCCeEEEEeEEEEcccccccccC-CCccccccccceeeehhhhhh-hhhcCCCeEEEECC
Confidence 8887766655555667777888899999999999999998654 5553211 111122222222 22345789999999
Q ss_pred CHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCCeEEE-----EcCC
Q psy2951 191 SFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAA-----NLDN 265 (1466)
Q Consensus 191 G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~v-----~~~~ 265 (1466)
|++|+|+|..|+++|.+||+++|.+.... ... ...+.+...+++.+....+.++...+. ....+ .+.+
T Consensus 161 G~ig~e~A~~l~~~G~~Vt~v~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~ 233 (314)
T 4a5l_A 161 GDAAMEEALHLTKYGSKVIILHRRDAFRA---SKT---MQERVLNHPKIEVIWNSELVELEGDGD-LLNGAKIHNLVSGE 233 (314)
T ss_dssp SHHHHHHHHHHTTTSSEEEEECSSSSCCS---CHH---HHHHHHTCTTEEEECSEEEEEEEESSS-SEEEEEEEETTTCC
T ss_pred ChHHHHHHHHHHHhCCeeeeecccccccc---cch---hhhhhhcccceeeEeeeeeEEEEeeee-ccceeEEeeccccc
Confidence 99999999999999999999998765432 222 233455667889998988888876432 22222 2345
Q ss_pred CcEEeccEEEEeeccccCccccccCCceecCCccEEECCCCCcCCCCEEEecccccccCccCCCCcceeccHHHHHHHHH
Q psy2951 266 GTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGR 345 (1466)
Q Consensus 266 g~~i~~D~Vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~ 345 (1466)
++++++|.|++|+|++||++++.. .++++++|++ ||+++|||+|+|||+|||++.+. .++..|+.||+
T Consensus 234 ~~~i~~d~vi~a~G~~pn~~~l~~-~~~~~~~G~i-v~~~~~Ts~pgIyA~GDv~~~~~----------~~~~~A~~~G~ 301 (314)
T 4a5l_A 234 YKVVPVAGLFYAIGHSPNSKFLGG-QVKTADDGYI-LTEGPKTSVDGVFACGDVCDRVY----------RQAIVAAGSGC 301 (314)
T ss_dssp EEEEECSEEEECSCEEESCGGGTT-SSCBCTTSCB-CCBTTBCSSTTEEECSTTTCSSC----------CCHHHHHHHHH
T ss_pred ceeeccccceEecccccChhHhcc-cceEcCCeeE-eCCCCccCCCCEEEEEeccCCcc----------hHHHHHHHHHH
Confidence 678999999999999999998865 4677888876 88899999999999999997652 34667999999
Q ss_pred HHHHHhc
Q psy2951 346 IAALNMV 352 (1466)
Q Consensus 346 ~aa~~i~ 352 (1466)
.||.++.
T Consensus 302 ~AA~~~~ 308 (314)
T 4a5l_A 302 MAALSCE 308 (314)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999875
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-30 Score=297.53 Aligned_cols=281 Identities=23% Similarity=0.330 Sum_probs=214.5
Q ss_pred CcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCC-CCCCCCCCchhhc---cCcccccccChhhhccCCcEEEcCCeE
Q psy2951 1067 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENF-LPYDRVKLSKQLD---IKADSILLRTEEFYKDNDIHVIKGKKI 1142 (1466)
Q Consensus 1067 ~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~-~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~v 1142 (1466)
.+|+|||||+||+++|..|++.|. +|+|||+... ..+....+..... .....+.....+++++.+++++.+++|
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g~--~v~li~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 79 (310)
T 1fl2_A 2 YDVLIVGSGPAGAAAAIYSARKGI--RTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSA 79 (310)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTC--CEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCE
T ss_pred CCEEEECcCHHHHHHHHHHHHCCC--cEEEEeCCCCceeccccccccccCcCCCCHHHHHHHHHHHHHHcCCeEEccCEE
Confidence 579999999999999999999998 9999976421 0000000000000 011122222234566779999999889
Q ss_pred EEeecCC-----CCeEEecCCcEEecCeEEEecCCCCCcCCCCCCCC-----cEEEecCHHHHHhhhcccCCCCeEEEEc
Q psy2951 1143 ISDSELN-----EKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-----KVFYLRTVEDANNIAPHITPESNVVVIG 1212 (1466)
Q Consensus 1143 ~~i~d~~-----~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~-----~v~~~~~~~~~~~l~~~~~~~~~vvVvG 1212 (1466)
+.+ ++. ...|.+++|.++.||+||+|||+.|+.+++| |.+ +++++. .. ......+++|+|||
T Consensus 80 ~~i-~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~~~~~-g~~~~~~~~~~~~~---~~---~~~~~~~~~v~VvG 151 (310)
T 1fl2_A 80 SKL-IPAAVEGGLHQIETASGAVLKARSIIVATGAKWRNMNVP-GEDQYRTKGVTYCP---HC---DGPLFKGKRVAVIG 151 (310)
T ss_dssp EEE-ECCSSTTCCEEEEETTSCEEEEEEEEECCCEEECCCCCT-TTTTTBTTTEESCH---HH---HGGGGBTCEEEEEC
T ss_pred EEE-EecccCCceEEEEECCCCEEEeCEEEECcCCCcCCCCCC-ChhhcccceeEEec---cC---cHhhcCCCEEEEEC
Confidence 999 865 3477888888999999999999999888888 764 354432 11 22233589999999
Q ss_pred CCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHh-CCcEEEcCceEEEEEecCCCcEEEEEcCC---
Q psy2951 1213 SSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFES-KGVKFVMKANVSSFEKNEKNDVTAANLDN--- 1288 (1466)
Q Consensus 1213 ~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~-~gv~~~~~~~v~~i~~~~~g~~~~v~l~~--- 1288 (1466)
+|++|+|+|..|++.+.+|+++++.+.+.. . +.+.+.+++ .||+++++++++++. .+++++..|.+.+
T Consensus 152 ~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---~----~~~~~~l~~~~gv~v~~~~~v~~i~-~~~~~v~~v~~~~~~~ 223 (310)
T 1fl2_A 152 GGNSGVEAAIDLAGIVEHVTLLEFAPEMKA---D----QVLQDKLRSLKNVDIILNAQTTEVK-GDGSKVVGLEYRDRVS 223 (310)
T ss_dssp CSHHHHHHHHHHHTTBSEEEEECSSSSCCS---C----HHHHHHHHTCTTEEEESSEEEEEEE-ESSSSEEEEEEEETTT
T ss_pred CCHHHHHHHHHHHHhCCEEEEEEeCcccCc---c----HHHHHHHhhCCCeEEecCCceEEEE-cCCCcEEEEEEEECCC
Confidence 999999999999999999999999886532 2 334555666 699999999999998 4555666676653
Q ss_pred CC--eeecCEEEEeeccccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHH
Q psy2951 1289 GT--TIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYH 1366 (1466)
Q Consensus 1289 g~--~i~~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~q 1366 (1466)
|+ ++++|.||+++|..|++++++.. +.++.+|+|.||++++|+.|+|||+|||+..|.. ++..|..|
T Consensus 224 g~~~~i~~D~vi~a~G~~p~~~~l~~~-l~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~----------~~~~A~~~ 292 (310)
T 1fl2_A 224 GDIHNIELAGIFVQIGLLPNTNWLEGA-VERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYK----------QIIIATGE 292 (310)
T ss_dssp CCEEEEECSEEEECSCEEESCGGGTTT-SCBCTTSCBCCCTTCBCSSTTEEECSTTBSCSSC----------CHHHHHHH
T ss_pred CcEEEEEcCEEEEeeCCccCchHHhcc-ccccCCCcEEcCCCCccCCCCEEEeecccCCcch----------hhhhhHhh
Confidence 53 68999999999999999988764 8888889999999999999999999999987632 23789999
Q ss_pred HHHHHHHhcC
Q psy2951 1367 GRIAALNMVE 1376 (1466)
Q Consensus 1367 a~~aa~~i~g 1376 (1466)
|+.||.+|+.
T Consensus 293 g~~aa~~i~~ 302 (310)
T 1fl2_A 293 GAKASLSAFD 302 (310)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999874
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-30 Score=315.37 Aligned_cols=305 Identities=15% Similarity=0.185 Sum_probs=230.8
Q ss_pred CCeEEEEcCchHHHHHHHHHHH---cCCCccEEEEcCCCCCCCCCCccchhcc-cCcccccccCHhHhhhCCcEEEEceE
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQ---NGFTGKLYFITDENFLPYDRVKLSKQLD-IKADSILLRTEEFYKDNDIHVIKGKK 670 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~---~g~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~~~~~~~ 670 (1466)
+++|+|||||+||+++|..|++ .|++ |+++++++.+.|.........+ ...+++...+.+++++.|++++.++
T Consensus 4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~--Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~gv~~~~~~- 80 (437)
T 3sx6_A 4 SAHVVILGAGTGGMPAAYEMKEALGSGHE--VTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIAQS- 80 (437)
T ss_dssp SCEEEEECCSTTHHHHHHHHHHHHGGGSE--EEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTTTCEEECSC-
T ss_pred CCcEEEECCcHHHHHHHHHHhccCCCcCE--EEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHCCCEEEEeE-
Confidence 5899999999999999999999 6665 9999999876654322111111 4556677788888989999998765
Q ss_pred EEEeccccccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCC----cEEEecCHHHHHhhcccCC---CCCcEEEECCC
Q psy2951 671 IISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN----KVFYLRTVEDANNIAPHIT---PESNVVVIGSS 743 (1466)
Q Consensus 671 v~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~----~~~~~~~~~~~~~~~~~~~---~~~~vvVvG~G 743 (1466)
|+.+ +.+.+.+.++++.++.||+||||||++|+.+++| |.+ ..+...+..++..+.+.+. .+++++|||+|
T Consensus 81 v~~i-d~~~~~V~~~~g~~i~~d~lviAtG~~~~~~~ip-G~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~vVVGgG 158 (437)
T 3sx6_A 81 AEQI-DAEAQNITLADGNTVHYDYLMIATGPKLAFENVP-GSDPHEGPVQSICTVDHAERAFAEYQALLREPGPIVIGAM 158 (437)
T ss_dssp EEEE-ETTTTEEEETTSCEEECSEEEECCCCEECGGGST-TCSTTTSSEECCSSHHHHHHHHHHHHHHHHSCCCEEEEEC
T ss_pred EEEE-EcCCCEEEECCCCEEECCEEEECCCCCcCcccCC-CCCcccCcceecccccHHHHHHHHHHHHHhCCCEEEEEcC
Confidence 9999 8888899999998999999999999999999998 875 4556678888766654321 24567888986
Q ss_pred hH----H--HHHH----HHHhccCCe-----EEEEeecCccCc---cccCHHHHHHHHHHHHhcCcEEEccceEEEEEec
Q psy2951 744 FI----G--MEAA----AFCASKVKS-----VTVVGRGAVPFQ---ESLGKEVGERITKLFESKGVKFVMKANVSSFEKN 805 (1466)
Q Consensus 744 ~~----g--~e~A----~~l~~~g~~-----V~lv~~~~~~~~---~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~ 805 (1466)
.. | +|+| ..+++.|.+ |+++++.+.+.. +.+ ++..+.+.+.++++||++++++++++++.
T Consensus 159 ~~~g~~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~~~~~~~l~~~-~~~~~~~~~~l~~~gI~~~~~~~v~~v~~- 236 (437)
T 3sx6_A 159 AGASCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGV-GDSKGILTKGLKEEGIEAYTNCKVTKVED- 236 (437)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSSSTTCTTTTCC-TTHHHHHHHHHHHTTCEEECSEEEEEEET-
T ss_pred CCCCcCcHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCccccccccCcc-hHHHHHHHHHHHHCCCEEEcCCEEEEEEC-
Confidence 54 3 7777 666677764 999999886521 112 34778889999999999999999999983
Q ss_pred CCCceEEEECCC-----CcEEecCEEEEccccccCccccccCCceeeCCCcEEeCCCCCC-CCCCeEEeccccccCCccc
Q psy2951 806 EKNDVTAANLDN-----GTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLET-NVPGVYAGGDIAYAPLHSF 879 (1466)
Q Consensus 806 ~~~~~~~v~~~~-----g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t-~~~~iya~GD~~~~~~~~~ 879 (1466)
++........+ ++++++|.+++++|++++..+.+..++ .+++|+|.||+++|| ++|+|||+|||+..+....
T Consensus 237 -~~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~~~~~~~~~~~gl-~~~~G~i~Vd~~l~t~~~~~Ifa~GD~~~~~~~~~ 314 (437)
T 3sx6_A 237 -NKMYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVAGVEGL-CNPGGFVLVDEHQRSKKYANIFAAGIAIAIPPVET 314 (437)
T ss_dssp -TEEEEEEECTTSCEEEEEEEECSEEEEECCEECCHHHHTSTTT-BCTTSCBCBCTTSBBSSCTTEEECGGGBCCCCSCC
T ss_pred -CeEEEEecccCCccccceEEEEeEEEEcCCCcCchhhhccccc-cCCCCcEEeChhccCCCCCCEEEEEEEeccCCcCC
Confidence 22111112233 567999999999999988666555677 678899999999999 8999999999998764320
Q ss_pred CCce-eeeccHHHHHHHHHHHHHHhccCCC
Q psy2951 880 YNKN-ASIGHYQLAQYHGRIAALNMVEKKT 908 (1466)
Q Consensus 880 ~~~~-~~~~~~~~A~~~g~~aA~~i~~~~~ 908 (1466)
...+ ..+..++.|..||+.+|+||.....
T Consensus 315 ~~~~~~~pk~~~~A~~qg~~aA~ni~~~l~ 344 (437)
T 3sx6_A 315 TPVPTGAPKTGYMIESMVSAAVHNIKADLE 344 (437)
T ss_dssp CSSCCCCCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred CcCCCCCCcHHHHHHHHHHHHHHHHHHHhc
Confidence 0000 1245788999999999999985433
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-30 Score=299.38 Aligned_cols=283 Identities=16% Similarity=0.171 Sum_probs=212.7
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEE-EcCCCCCCCCCCc---c---chhc-ccCcccccccCHhHhhhCCcEE
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYF-ITDENFLPYDRVK---L---SKQL-DIKADSILLRTEEFYKDNDIHV 665 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~-~~~~~~~~~~~~~---~---~~~~-~~~~~~~~~~~~~~~~~~gv~~ 665 (1466)
.++||+|||||+|||+||..|+++|++ |++ +|+. .+++.... . .... .....++..++.+++++.++++
T Consensus 3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~--v~li~e~~-~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 79 (315)
T 3r9u_A 3 AMLDVAIIGGGPAGLSAGLYATRGGLK--NVVMFEKG-MPGGQITSSSEIENYPGVAQVMDGISFMAPWSEQCMRFGLKH 79 (315)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHHTCS--CEEEECSS-STTGGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHTTTCCEE
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCC--eEEEEeCC-CCCceeeeeceeccCCCCCCCCCHHHHHHHHHHHHHHcCcEE
Confidence 468999999999999999999999998 555 8873 22221110 0 0000 1234566667777888899999
Q ss_pred EEceEEEEeccc--cccEE-EccCCCEEecCEEEEcCCCCCCcCCCCCCCCc-----EEEecCHHHHHhhcccCCCCCcE
Q psy2951 666 IKGKKIISDSEL--NEKKI-KLQDGTSIDFTKIYLATGSSPRTISQADGVNK-----VFYLRTVEDANNIAPHITPESNV 737 (1466)
Q Consensus 666 ~~~~~v~~i~~~--~~~~v-~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~~-----~~~~~~~~~~~~~~~~~~~~~~v 737 (1466)
+.++ |..+.+. ....+ ...++ ++.||+||+|||+.|+.|+++ |.+. ++.. .. .......++++
T Consensus 80 ~~~~-v~~i~~~~~~~~~v~~~~~~-~~~~d~lvlAtG~~~~~~~~~-g~~~~~~~~~~~~---~~---~~~~~~~~~~v 150 (315)
T 3r9u_A 80 EMVG-VEQILKNSDGSFTIKLEGGK-TELAKAVIVCTGSAPKKAGFK-GEDEFFGKGVSTC---AT---CDGFFYKNKEV 150 (315)
T ss_dssp ECCC-EEEEEECTTSCEEEEETTSC-EEEEEEEEECCCEEECCCCCB-TTTTTBTTTEESC---HH---HHGGGGTTSEE
T ss_pred EEEE-EEEEecCCCCcEEEEEecCC-EEEeCEEEEeeCCCCCCCCCC-ChhhcCCCeEEee---ec---ccccccCcCEE
Confidence 9985 7766122 23443 33344 899999999999999999888 7651 2211 11 12223358999
Q ss_pred EEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECC-
Q psy2951 738 VVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLD- 816 (1466)
Q Consensus 738 vVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~- 816 (1466)
+|||+|.+|+|+|..|++.+.+|+++++.+.+. .+++ .+.+.+++.||++++++.+.++... ++++..+.+.
T Consensus 151 ~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~---~~~~---~~~~~~~~~gv~~~~~~~v~~i~~~-~~~~~~v~~~~ 223 (315)
T 3r9u_A 151 AVLGGGDTALEEALYLANICSKIYLIHRRDEFR---AAPS---TVEKVKKNEKIELITSASVDEVYGD-KMGVAGVKVKL 223 (315)
T ss_dssp EEECCBHHHHHHHHHHHTTSSEEEEECSSSSCB---SCHH---HHHHHHHCTTEEEECSCEEEEEEEE-TTEEEEEEEEC
T ss_pred EEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCC---CCHH---HHHHHHhcCCeEEEeCcEEEEEEcC-CCcEEEEEEEc
Confidence 999999999999999999999999999988653 2233 3445567899999999999999843 3345445544
Q ss_pred -CCc--EEecCEEEEccccccCcccccc---CC-ceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccH
Q psy2951 817 -NGT--TIPADLVIVGIGTVLNTNYLDG---KG-VELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHY 889 (1466)
Q Consensus 817 -~g~--~i~~D~vi~a~G~~p~~~~~~~---~g-l~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~ 889 (1466)
+|+ ++++|.||+|+|++|++.+++. +| ++++++|+|.+|++++|+.|+|||+|||+..+. ..+
T Consensus 224 ~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~g~l~~~~~g~i~vd~~~~t~~~~v~a~GD~~~~~~----------~~~ 293 (315)
T 3r9u_A 224 KDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLKMQTSVAGLFAAGDLRKDAP----------KQV 293 (315)
T ss_dssp TTSCEEEECCSCEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTCBCSSTTEEECGGGBTTCC----------CCH
T ss_pred CCCCeEEeecCeEEEEEcCCCCchhhhcccccceeeecCCCcEEeCCCcccCCCCEEEeecccCCch----------hhh
Confidence 775 7999999999999999988766 65 889999999999999999999999999986432 245
Q ss_pred HHHHHHHHHHHHHhcc
Q psy2951 890 QLAQYHGRIAALNMVE 905 (1466)
Q Consensus 890 ~~A~~~g~~aA~~i~~ 905 (1466)
..|+.||+.||.+|..
T Consensus 294 ~~A~~~g~~aa~~i~~ 309 (315)
T 3r9u_A 294 ICAAGDGAVAALSAMA 309 (315)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHhhHHHHHHHHHH
Confidence 7999999999999864
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-30 Score=305.08 Aligned_cols=283 Identities=19% Similarity=0.231 Sum_probs=216.4
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCC----CCCCCC---------CCCchhhccCcccccccChhhhc
Q psy2951 1064 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN----FLPYDR---------VKLSKQLDIKADSILLRTEEFYK 1130 (1466)
Q Consensus 1064 ~~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~----~~~~~~---------~~l~~~~~~~~~~~~~~~~~~~~ 1130 (1466)
..+++|+|||||+||+++|..|++.|+ +|+|||+++ .++... +.+... .....+.....+++.
T Consensus 20 ~~~~~vvIIG~G~aGl~aA~~l~~~g~--~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 95 (338)
T 3itj_A 20 HVHNKVTIIGSGPAAHTAAIYLARAEI--KPILYEGMMANGIAAGGQLTTTTEIENFPGFPDG--LTGSELMDRMREQST 95 (338)
T ss_dssp -CEEEEEEECCSHHHHHHHHHHHHTTC--CCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTC--EEHHHHHHHHHHHHH
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCC--CEEEEecCCCCCCCcCcccccchhhcccCCCccc--CCHHHHHHHHHHHHH
Confidence 346799999999999999999999998 899999965 222110 000000 011122222335566
Q ss_pred cCCcEEEcCCeEEEeecCCCCeEEe-----cCCcEEecCeEEEecCCCCCcCCCCCCCC-----cEEEecCHHHHHhhhc
Q psy2951 1131 DNDIHVIKGKKIISDSELNEKKIKL-----QDGTSIDFTKIYLATGSSPRTISQADGVN-----KVFYLRTVEDANNIAP 1200 (1466)
Q Consensus 1131 ~~~v~~~~~~~v~~i~d~~~~~v~~-----~~g~~~~yd~lvlAtG~~~~~~~~~~g~~-----~v~~~~~~~~~~~l~~ 1200 (1466)
+.+++++.++ |..+ +...+.+.+ +++..+.||+||+|||+.|+.+++| |.+ .+++....+. ...
T Consensus 96 ~~gv~i~~~~-v~~i-~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~~~~~~~-g~~~~~~~~~~~~~~~~~---~~~ 169 (338)
T 3itj_A 96 KFGTEIITET-VSKV-DLSSKPFKLWTEFNEDAEPVTTDAIILATGASAKRMHLP-GEETYWQKGISACAVCDG---AVP 169 (338)
T ss_dssp HTTCEEECSC-EEEE-ECSSSSEEEEETTCSSSCCEEEEEEEECCCEEECCCCCT-THHHHBTTTEESCHHHHT---TSG
T ss_pred HcCCEEEEeE-EEEE-EEcCCEEEEEEEecCCCcEEEeCEEEECcCCCcCCCCCC-CchhccCccEEEchhccc---chh
Confidence 7799999998 9999 988776665 4677899999999999999999888 754 3433321111 111
Q ss_pred ccCCCCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhC-CcEEEcCceEEEEEecCCC
Q psy2951 1201 HITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESK-GVKFVMKANVSSFEKNEKN 1279 (1466)
Q Consensus 1201 ~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~-gv~~~~~~~v~~i~~~~~g 1279 (1466)
...+++++|||+|.+|+|+|..|++.|.+|+++++.+.++. .+.+.+.+.+. ||++++++.+++++ .+++
T Consensus 170 -~~~~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~-------~~~~~~~l~~~~gv~i~~~~~v~~i~-~~~~ 240 (338)
T 3itj_A 170 -IFRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA-------STIMQKRAEKNEKIEILYNTVALEAK-GDGK 240 (338)
T ss_dssp -GGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS-------CHHHHHHHHHCTTEEEECSEEEEEEE-ESSS
T ss_pred -hcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC-------CHHHHHHHHhcCCeEEeecceeEEEE-cccC
Confidence 23589999999999999999999999999999999886653 23444555554 99999999999998 4555
Q ss_pred cEEEEEcCC-----CCeeecCEEEEeeccccCccccccCCceeeCCCeEEe-CCCccccCCCEEEecccccCCCccCCCc
Q psy2951 1280 DVTAANLDN-----GTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVV-NEYLETNVPGVYAGGDIAYAPLHSFYNK 1353 (1466)
Q Consensus 1280 ~~~~v~l~~-----g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~v-d~~~~t~~~~v~a~GD~a~~p~~~~~~~ 1353 (1466)
++..|.+.+ ++++++|.||+++|..|++++++. ++.++.+|++.+ |++++|+.|+|||+|||+..+..
T Consensus 241 ~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~-~l~~~~~G~i~v~~~~~~t~~~~vya~GD~~~~~~~----- 314 (338)
T 3itj_A 241 LLNALRIKNTKKNEETDLPVSGLFYAIGHTPATKIVAG-QVDTDEAGYIKTVPGSSLTSVPGFFAAGDVQDSKYR----- 314 (338)
T ss_dssp SEEEEEEEETTTTEEEEEECSEEEECSCEEECCGGGBT-TBCBCTTSCBCCCTTSSBCSSTTEEECGGGGCSSCC-----
T ss_pred cEEEEEEEECCCCceEEEEeCEEEEEeCCCCChhHhhC-ceEecCCCcEEEcCcccccCCCCEEEeeccCCCCcc-----
Confidence 676677765 468999999999999999999887 899998898885 89999999999999999975321
Q ss_pred eeeeecHHHHHHHHHHHHHHhcC
Q psy2951 1354 NASIGHYQLAQYHGRIAALNMVE 1376 (1466)
Q Consensus 1354 ~~~~~~~~~A~~qa~~aa~~i~g 1376 (1466)
.+..|..||+.||.+|+.
T Consensus 315 -----~~~~A~~~g~~aa~~i~~ 332 (338)
T 3itj_A 315 -----QAITSAGSGCMAALDAEK 332 (338)
T ss_dssp -----CHHHHHHHHHHHHHHHHH
T ss_pred -----ceeeehhhhHHHHHHHHH
Confidence 247899999999999874
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.1e-30 Score=299.01 Aligned_cols=280 Identities=20% Similarity=0.252 Sum_probs=213.1
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCC---Cchh--hc--cCcccccccChhhhccCCcEEEc
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK---LSKQ--LD--IKADSILLRTEEFYKDNDIHVIK 1138 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~---l~~~--~~--~~~~~~~~~~~~~~~~~~v~~~~ 1138 (1466)
+++|+|||||+||+++|..|++.|+ +|+|||++. ++..... +... +. .....+.....+.+++.+++++.
T Consensus 8 ~~dvvIIG~G~aGl~aA~~l~~~g~--~v~lie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~ 84 (325)
T 2q7v_A 8 DYDVVIIGGGPAGLTAAIYTGRAQL--STLILEKGM-PGGQIAWSEEVENFPGFPEPIAGMELAQRMHQQAEKFGAKVEM 84 (325)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTC--CEEEEESSC-TTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHHHHHTTCEEEE
T ss_pred cCCEEEECCCHHHHHHHHHHHHcCC--cEEEEeCCC-CCcccccccccccCCCCCCCCCHHHHHHHHHHHHHHcCCEEEe
Confidence 4689999999999999999999998 999999983 2111000 0000 00 01112222223456677999988
Q ss_pred CCeEEEeecCC--C---CeEEecCCcEEecCeEEEecCCCCCcCCCCCCCC-----cEEEecCHHHHHhhhcccCCCCeE
Q psy2951 1139 GKKIISDSELN--E---KKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-----KVFYLRTVEDANNIAPHITPESNV 1208 (1466)
Q Consensus 1139 ~~~v~~i~d~~--~---~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~-----~v~~~~~~~~~~~l~~~~~~~~~v 1208 (1466)
+ +|..+ +.. . ..|.+.+|.++.||+||+|||+.|+.++++ |.+ ++++....++ ....+++|
T Consensus 85 ~-~v~~i-~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~~i~-g~~~~~~~~~~~~~~~~~------~~~~~~~v 155 (325)
T 2q7v_A 85 D-EVQGV-QHDATSHPYPFTVRGYNGEYRAKAVILATGADPRKLGIP-GEDNFWGKGVSTCATCDG------FFYKGKKV 155 (325)
T ss_dssp C-CEEEE-EECTTSSSCCEEEEESSCEEEEEEEEECCCEEECCCCCT-TTTTTBTTTEESCHHHHG------GGGTTCEE
T ss_pred e-eEEEE-EeccCCCceEEEEECCCCEEEeCEEEECcCCCcCCCCCC-ChhhccCceEEEeccCCH------HHcCCCEE
Confidence 5 69999 765 3 467788888999999999999999988888 764 3454432221 22347999
Q ss_pred EEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcC-
Q psy2951 1209 VVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLD- 1287 (1466)
Q Consensus 1209 vVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~- 1287 (1466)
+|||+|.+|+|+|..|++.|.+|+++++.+.+.. .+.+ ..+++++.||+++++++++++. . ++++..|.+.
T Consensus 156 ~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---~~~~---~~~l~~~~gv~i~~~~~v~~i~-~-~~~v~~v~~~~ 227 (325)
T 2q7v_A 156 VVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLRA---NKVA---QARAFANPKMKFIWDTAVEEIQ-G-ADSVSGVKLRN 227 (325)
T ss_dssp EEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCS---CHHH---HHHHHTCTTEEEECSEEEEEEE-E-SSSEEEEEEEE
T ss_pred EEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCCc---chHH---HHHHHhcCCceEecCCceEEEc-c-CCcEEEEEEEE
Confidence 9999999999999999999999999999875532 2222 2233345799999999999998 3 3556567765
Q ss_pred --CCC--eeecCEEEEeeccccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHH
Q psy2951 1288 --NGT--TIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLA 1363 (1466)
Q Consensus 1288 --~g~--~i~~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A 1363 (1466)
+|+ ++++|.||+|+|..|++++++.. +.++.+|+|.||++++|++|+|||+|||+..+. ..|..|
T Consensus 228 ~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~-~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~----------~~~~~A 296 (325)
T 2q7v_A 228 LKTGEVSELATDGVFIFIGHVPNTAFVKDT-VSLRDDGYVDVRDEIYTNIPMLFAAGDVSDYIY----------RQLATS 296 (325)
T ss_dssp TTTCCEEEEECSEEEECSCEEESCGGGTTT-SCBCTTSCBCCBTTTBCSSTTEEECSTTTCSSC----------CCHHHH
T ss_pred CCCCcEEEEEcCEEEEccCCCCChHHHhhh-cccCCCccEecCCCCccCCCCEEEeecccCccH----------HHHHHH
Confidence 675 78999999999999999999877 788888999999999999999999999998641 135899
Q ss_pred HHHHHHHHHHhcC
Q psy2951 1364 QYHGRIAALNMVE 1376 (1466)
Q Consensus 1364 ~~qa~~aa~~i~g 1376 (1466)
..||+.||.||+.
T Consensus 297 ~~~g~~aa~~i~~ 309 (325)
T 2q7v_A 297 VGAGTRAAMMTER 309 (325)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999985
|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-30 Score=300.79 Aligned_cols=283 Identities=19% Similarity=0.248 Sum_probs=215.9
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCcc---ch--hc--ccCcccccccCHhHhhhCCcEEEE
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKL---SK--QL--DIKADSILLRTEEFYKDNDIHVIK 667 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~---~~--~~--~~~~~~~~~~~~~~~~~~gv~~~~ 667 (1466)
.+||+||||||||+++|+.|++.|++ |+++|+.. .+...... .. .+ .....++..++.+.+.+.+++++.
T Consensus 5 ~~~vvIIG~G~aGl~aA~~l~~~g~~--v~lie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (320)
T 1trb_A 5 HSKLLILGSGPAGYTAAVYAARANLQ--PVLITGME-KGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIF 81 (320)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCC--CEEECCSS-TTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEEC
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCc--EEEEccCC-CCceEecchhhhhCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE
Confidence 47999999999999999999999988 66777542 12110000 00 00 012334555556677788999999
Q ss_pred ceEEEEeccccccEEE-ccCCCEEecCEEEEcCCCCCCcCCCCCCCC-----cEEEecCHHHHHhhcccCCCCCcEEEEC
Q psy2951 668 GKKIISDSELNEKKIK-LQDGTSIDFTKIYLATGSSPRTISQADGVN-----KVFYLRTVEDANNIAPHITPESNVVVIG 741 (1466)
Q Consensus 668 ~~~v~~i~~~~~~~v~-~~~~~~~~~d~lviAtG~~~~~~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~vvVvG 741 (1466)
++ +..+ +.....+. +.++.++.||+||+|||+.|..|+++ |.+ .++... ... ..+..+++|+|||
T Consensus 82 ~~-v~~i-~~~~~~~~v~~~~~~~~~~~lv~AtG~~~~~~~~~-g~~~~~~~~~~~~~---~~~---~~~~~~~~v~ViG 152 (320)
T 1trb_A 82 DH-INKV-DLQNRPFRLNGDNGEYTCDALIIATGASARYLGLP-SEEAFKGRGVSACA---TSD---GFFYRNQKVAVIG 152 (320)
T ss_dssp CC-EEEE-ECSSSSEEEEESSCEEEEEEEEECCCEEECCCCCH-HHHHTBTTTEESCH---HHH---GGGGTTSEEEEEC
T ss_pred ee-eeEE-EecCCEEEEEeCCCEEEcCEEEECCCCCcCCCCCC-ChHHhCCceeEecc---cCC---ccccCCCeEEEEC
Confidence 98 8887 54433222 56778999999999999999888887 643 222221 111 2234589999999
Q ss_pred CChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCC----
Q psy2951 742 SSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDN---- 817 (1466)
Q Consensus 742 ~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~---- 817 (1466)
+|++|+|+|..|++.+.+|+++++.+.+. .++.+.+.+.+.+++.||+++++++++++..+ ++++..+.+.+
T Consensus 153 ~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~-~~~v~~v~~~~~~~~ 228 (320)
T 1trb_A 153 GGNTAVEEALYLSNIASEVHLIHRRDGFR---AEKILIKRLMDKVENGNIILHTNRTLEEVTGD-QMGVTGVRLRDTQNS 228 (320)
T ss_dssp SSHHHHHHHHHHTTTSSEEEEECSSSSCC---CCHHHHHHHHHHHHTSSEEEECSCEEEEEEEC-SSSEEEEEEECCTTC
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEeCCccc---cCHHHHHHHHHhcccCCeEEEcCceeEEEEcC-CCceEEEEEEeccCC
Confidence 99999999999999999999999987653 35777788888899999999999999999843 33555565543
Q ss_pred C--cEEecCEEEEccccccCccccccCCceeeCCCcEEeCCCC-----CCCCCCeEEeccccccCCcccCCceeeeccHH
Q psy2951 818 G--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYL-----ETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQ 890 (1466)
Q Consensus 818 g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~-----~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~ 890 (1466)
| +++++|.||+|+|++|++++++ .+++++ +|++.+|+++ +|+.|+|||+|||+..+.. .+.
T Consensus 229 g~~~~i~~D~vv~a~G~~p~~~~~~-~~l~~~-~G~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~----------~~~ 296 (320)
T 1trb_A 229 DNIESLDVAGLFVAIGHSPNTAIFE-GQLELE-NGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYR----------QAI 296 (320)
T ss_dssp CCCEEEECSEEEECSCEEESCGGGT-TTSCEE-TTEECCCCSSSSCTTBCSSTTEEECGGGGCSSSC----------CHH
T ss_pred CceEEEEcCEEEEEeCCCCChHHhc-cccccc-CceEEECCCcccccccCCCCCEEEcccccCCcch----------hhh
Confidence 4 5799999999999999998887 468888 8999999987 8999999999999986422 357
Q ss_pred HHHHHHHHHHHHhcc
Q psy2951 891 LAQYHGRIAALNMVE 905 (1466)
Q Consensus 891 ~A~~~g~~aA~~i~~ 905 (1466)
.|+.||+.||.+|..
T Consensus 297 ~A~~~g~~aa~~i~~ 311 (320)
T 1trb_A 297 TSAGTGCMAALDAER 311 (320)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhhccHHHHHHHHHH
Confidence 899999999999864
|
| >3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-30 Score=313.74 Aligned_cols=294 Identities=14% Similarity=0.129 Sum_probs=224.4
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcc-cCcccccccCHhHhhhCCcEEEEceEEEE
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD-IKADSILLRTEEFYKDNDIHVIKGKKIIS 673 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~~~~~~~v~~ 673 (1466)
.|||||||||+||++||.+|++++++.+|+++|+++.+.+.........+ .+.+++... .+.+.+.|++++.++ |+.
T Consensus 2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~-~~~~~~~gv~~i~~~-v~~ 79 (401)
T 3vrd_B 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVG-YDGLRAHGIQVVHDS-ALG 79 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEEC-SHHHHHTTCEEECSC-EEE
T ss_pred cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhC-HHHHHHCCCEEEEeE-EEE
Confidence 58999999999999999999999998899999998764443222111112 344444433 345567899999988 999
Q ss_pred eccccccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCC------cEEEecCHHHHHhhcccC---CCCCcEEEECCC-
Q psy2951 674 DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN------KVFYLRTVEDANNIAPHI---TPESNVVVIGSS- 743 (1466)
Q Consensus 674 i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~------~~~~~~~~~~~~~~~~~~---~~~~~vvVvG~G- 743 (1466)
+ |++++.+.+.++.++.||+||||||+++..++++ |.+ .++.+++.+++..+.+.+ ..+..+++.+++
T Consensus 80 i-d~~~~~v~~~~g~~i~yd~LviAtG~~~~~~~i~-G~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~ 157 (401)
T 3vrd_B 80 I-DPDKKLVKTAGGAEFAYDRCVVAPGIDLLYDKIE-GYSEALAAKLPHAWKAGEQTALLRRQLESMDDGGVVIIAPPAP 157 (401)
T ss_dssp E-ETTTTEEEETTSCEEECSEEEECCCEEECGGGSB-TCCSGGGGTSCCCSSCSHHHHHHHHHHHHSCTTCEEEEECCSS
T ss_pred E-EccCcEEEecccceeecceeeeccCCccccCCcc-CchhhcccCccceeccHHHHHHHHHHHHhcccCCcEEEecCCc
Confidence 9 9999999999999999999999999999999998 765 334556666665554333 334445444332
Q ss_pred -----h----HHHHHHHHHhccC--CeEEEEeecCccC-ccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceE
Q psy2951 744 -----F----IGMEAAAFCASKV--KSVTVVGRGAVPF-QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVT 811 (1466)
Q Consensus 744 -----~----~g~e~A~~l~~~g--~~V~lv~~~~~~~-~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~ 811 (1466)
. .+++++..+++.+ .+|+++++.+.+. .+.+++.+.+.+.+.+++.||+++++.++..++.+.+. .
T Consensus 158 ~i~~~~a~~e~~~~~a~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~v~~v~~~~~~--~ 235 (401)
T 3vrd_B 158 PFRCPPGPYERASQIAHYLKAHKSKSKVIILDNSQTFSKQAQFTKGWERLYGFGTENALIEWHPGPDAAVVKTDTEA--M 235 (401)
T ss_dssp SCBCTTHHHHHHHHHHHHHHHHCTTCEEEEECSSSSCTTHHHHHHHHHHHSCTTSTTCSEEEECTTTTCEEEEETTT--T
T ss_pred cEEeehHHHHHHHHHHHHHHhcCCCCEEEEEcccccccccccccHHHHHHHHHHHHhcCcEEEeCceEEEEEecccc--e
Confidence 1 4566777777664 7899998887653 23456667677777788999999999999888744332 3
Q ss_pred EEECCCCcEEecCEEEEccccccCccccccCCceeeCCCcEEeCCC-CC-CCCCCeEEecccccc-CCcccCCceeeecc
Q psy2951 812 AANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEY-LE-TNVPGVYAGGDIAYA-PLHSFYNKNASIGH 888 (1466)
Q Consensus 812 ~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~-~~-t~~~~iya~GD~~~~-~~~~~~~~~~~~~~ 888 (1466)
.+.+++|+++++|++++++|++|+ .+++++++ .+++|+|.||++ || |++|||||+|||+.. |.+ ++
T Consensus 236 ~v~~~~g~~i~~D~vi~~~g~~~~-~~~~~~gl-~~~~G~i~VD~~tl~~t~~p~VfAiGDva~~~~~p---------k~ 304 (401)
T 3vrd_B 236 TVETSFGETFKAAVINLIPPQRAG-KIAQSASL-TNDSGWCPVDIRTFESSLQPGIHVIGDACNAAPMP---------KS 304 (401)
T ss_dssp EEEETTSCEEECSEEEECCCEEEC-HHHHHTTC-CCTTSSBCBCTTTCBBSSSTTEEECGGGBCCTTSC---------BS
T ss_pred EEEcCCCcEEEeeEEEEecCcCCc-hhHhhccc-cccCCCEEECCCcceecCCCCEEEecccccCCCCC---------ch
Confidence 578899999999999999999998 67888888 578899999986 65 789999999999864 322 36
Q ss_pred HHHHHHHHHHHHHHhcc
Q psy2951 889 YQLAQYHGRIAALNMVE 905 (1466)
Q Consensus 889 ~~~A~~~g~~aA~~i~~ 905 (1466)
++.|..||+++|+||+.
T Consensus 305 a~~A~~qa~v~A~ni~~ 321 (401)
T 3vrd_B 305 AYSANSQAKVAAAAVVA 321 (401)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78999999999999974
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-31 Score=356.27 Aligned_cols=312 Identities=19% Similarity=0.280 Sum_probs=224.0
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcccCcccccccCHhHhhhCCcEEEEceEEEE
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIIS 673 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~ 673 (1466)
+.++|+||||||||++||..|+++|++ .|+++|+.+.+++....-...+. ...++..+..+++++.||+++.++.+.
T Consensus 186 ~~~~VvVIGgGpAGl~aA~~L~~~G~~-~Vtv~E~~~~~GG~~~~~ip~~~-~~~~~~~~~~~~~~~~gv~~~~~~~v~- 262 (1025)
T 1gte_A 186 YSAKIALLGAGPASISCASFLARLGYS-DITIFEKQEYVGGLSTSEIPQFR-LPYDVVNFEIELMKDLGVKIICGKSLS- 262 (1025)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHTTCC-CEEEEESSSSCSTHHHHTSCTTT-SCHHHHHHHHHHHHTTTCEEEESCCBS-
T ss_pred CCCEEEEECccHHHHHHHHHHHhcCCC-cEEEEeCCCCCCccccccCCccc-CCHHHHHHHHHHHHHCCcEEEcccEec-
Confidence 468999999999999999999999984 48889987655532100000011 122344455677888999999998442
Q ss_pred eccccccEEEccCCCEEecCEEEEcCCC-CCCcCCCCCCCC---cEEEecCHHHHHh---------hccc-CCCCCcEEE
Q psy2951 674 DSELNEKKIKLQDGTSIDFTKIYLATGS-SPRTISQADGVN---KVFYLRTVEDANN---------IAPH-ITPESNVVV 739 (1466)
Q Consensus 674 i~~~~~~~v~~~~~~~~~~d~lviAtG~-~~~~~~~~~g~~---~~~~~~~~~~~~~---------~~~~-~~~~~~vvV 739 (1466)
.+.++++++.++.||+||||||+ +|+.+++++|.+ ++++..++..... +... ...+++|+|
T Consensus 263 -----~~~v~~~~~~~~~~d~vvlAtGa~~p~~l~~~~G~~~~~gv~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~VvV 337 (1025)
T 1gte_A 263 -----ENEITLNTLKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIV 337 (1025)
T ss_dssp -----TTSBCHHHHHHTTCCEEEECCCCCEECCCGGGTTCCTTTTEEEHHHHHHHHHHHHCBTTBSCCCCCCCCCSEEEE
T ss_pred -----cceEEhhhcCccCCCEEEEecCCCCCCCCCCCCCCCCCCCEEEhHHHHHHHHhhcccccccccccccccCCcEEE
Confidence 12344444456789999999998 588776543543 5665433222111 1111 123679999
Q ss_pred ECCChHHHHHHHHHhccCC-eEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECC--
Q psy2951 740 IGSSFIGMEAAAFCASKVK-SVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLD-- 816 (1466)
Q Consensus 740 vG~G~~g~e~A~~l~~~g~-~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~-- 816 (1466)
||||++|+|+|..++++|. +||+++|.+..+.+.++.++ +.+++.||+++++..++++.. +++++..+.+.
T Consensus 338 IGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~~~~~~~~~e~-----~~~~~~Gv~~~~~~~~~~i~~-~~g~v~~v~~~~~ 411 (1025)
T 1gte_A 338 LGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEV-----ELAKEEKCEFLPFLSPRKVIV-KGGRIVAVQFVRT 411 (1025)
T ss_dssp ECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCCSCHHHH-----HHHHHTTCEEECSEEEEEEEE-ETTEEEEEEEEEE
T ss_pred ECCChHHHHHHHHHHHcCCCEEEEEEecChhhCCCCHHHH-----HHHHHcCCEEEeCCCceEEEc-cCCeEEEEEEEEe
Confidence 9999999999999999995 89999998854434444443 456788999999999999974 34555545432
Q ss_pred ----CC---------cEEecCEEEEccccccC-cccccc-CCceeeCCCcEEeCC-CCCCCCCCeEEeccccccCCcccC
Q psy2951 817 ----NG---------TTIPADLVIVGIGTVLN-TNYLDG-KGVELNGQKAVVVNE-YLETNVPGVYAGGDIAYAPLHSFY 880 (1466)
Q Consensus 817 ----~g---------~~i~~D~vi~a~G~~p~-~~~~~~-~gl~~~~~G~i~vd~-~~~t~~~~iya~GD~~~~~~~~~~ 880 (1466)
+| .++++|.||+|+|++|+ ..|++. .|++++++|+|.||+ +++|+.|+|||+|||+..+..
T Consensus 412 ~~~~~g~~~~~~g~~~~i~aD~Vi~A~G~~~~~~~l~~~~~gl~~~~~G~I~vd~~~~~Ts~~~VfA~GD~~~~~~~--- 488 (1025)
T 1gte_A 412 EQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMANT--- 488 (1025)
T ss_dssp EECTTSCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBCSSTTEEECSGGGCSCCC---
T ss_pred EEcCCCCcccCCCceEEEECCEEEECCCCCCCchhhhhcccCceECCCCCEEECCCCCccCCCCEEEeCCCCCCchH---
Confidence 22 37899999999999874 566665 589999999999997 899999999999999976543
Q ss_pred CceeeeccHHHHHHHHHHHHHHhcc-------CC-CcCcccCeeeee--ecCceeEEeec
Q psy2951 881 NKNASIGHYQLAQYHGRIAALNMVE-------KK-TSLSTIPFFWTM--LFGVGFRFAGY 930 (1466)
Q Consensus 881 ~~~~~~~~~~~A~~~g~~aA~~i~~-------~~-~~~~~~~~~~~~--~~~~~~~~~g~ 930 (1466)
+..|+.||+.||.+|.+ .. ..++.+||||+. .++++..+.|+
T Consensus 489 --------~~~A~~~G~~aA~~i~~~L~~~~~~~~~~~~~~p~~~~ev~~v~ls~~~~G~ 540 (1025)
T 1gte_A 489 --------TVESVNDGKQASWYIHKYIQAQYGASVSAKPELPLFYTPVDLVDISVEMAGL 540 (1025)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCCBCCCCCGGGGCCCCEEETTE
T ss_pred --------HHHHHHHHHHHHHHHHHHHHhccCCCcccCcCccccccccccccceeeeccc
Confidence 47899999999999974 11 245789999983 55555555554
|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.9e-30 Score=297.81 Aligned_cols=281 Identities=19% Similarity=0.254 Sum_probs=218.7
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCC---------CCCCCchhhccCcccccccChhhhccCCcEE
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY---------DRVKLSKQLDIKADSILLRTEEFYKDNDIHV 1136 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~---------~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ 1136 (1466)
+++|+|||||+||+++|..|++.|. +|+|||+.. ++. ..+.++.. .....+......++.+.++++
T Consensus 5 ~~~vvIIG~G~aGl~aA~~l~~~g~--~v~lie~~~-~gg~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (320)
T 1trb_A 5 HSKLLILGSGPAGYTAAVYAARANL--QPVLITGME-KGGQLTTTTEVENWPGDPND--LTGPLLMERMHEHATKFETEI 79 (320)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTC--CCEEECCSS-TTGGGGGCSBCCCSTTCCSS--CBHHHHHHHHHHHHHHTTCEE
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCC--cEEEEccCC-CCceEecchhhhhCCCCCCC--CCHHHHHHHHHHHHHHCCCEE
Confidence 3689999999999999999999998 899999642 111 01111100 011122222234566779999
Q ss_pred EcCCeEEEeecCCCCeEE-ecCCcEEecCeEEEecCCCCCcCCCCCCCC-----cEEEecCHHHHHhhhcccCCCCeEEE
Q psy2951 1137 IKGKKIISDSELNEKKIK-LQDGTSIDFTKIYLATGSSPRTISQADGVN-----KVFYLRTVEDANNIAPHITPESNVVV 1210 (1466)
Q Consensus 1137 ~~~~~v~~i~d~~~~~v~-~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~-----~v~~~~~~~~~~~l~~~~~~~~~vvV 1210 (1466)
+.++ |..+ +...+.+. +.++.++.||+||+|||+.|+.+++| |.+ ++++..+.++ .+..+++|+|
T Consensus 80 ~~~~-v~~i-~~~~~~~~v~~~~~~~~~~~lv~AtG~~~~~~~~~-g~~~~~~~~~~~~~~~~~------~~~~~~~v~V 150 (320)
T 1trb_A 80 IFDH-INKV-DLQNRPFRLNGDNGEYTCDALIIATGASARYLGLP-SEEAFKGRGVSACATSDG------FFYRNQKVAV 150 (320)
T ss_dssp ECCC-EEEE-ECSSSSEEEEESSCEEEEEEEEECCCEEECCCCCH-HHHHTBTTTEESCHHHHG------GGGTTSEEEE
T ss_pred EEee-eeEE-EecCCEEEEEeCCCEEEcCEEEECCCCCcCCCCCC-ChHHhCCceeEecccCCc------cccCCCeEEE
Confidence 9997 9999 87666554 56788999999999999999888887 643 3444332222 2345899999
Q ss_pred EcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCC--
Q psy2951 1211 IGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDN-- 1288 (1466)
Q Consensus 1211 vG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~-- 1288 (1466)
||+|.+|+|+|..|++.|.+|+++++.+.+. .++.+.+.+.+.+++.||++++++++++++ .+++++..|.+.+
T Consensus 151 iG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~-~~~~~v~~v~~~~~~ 226 (320)
T 1trb_A 151 IGGGNTAVEEALYLSNIASEVHLIHRRDGFR---AEKILIKRLMDKVENGNIILHTNRTLEEVT-GDQMGVTGVRLRDTQ 226 (320)
T ss_dssp ECSSHHHHHHHHHHTTTSSEEEEECSSSSCC---CCHHHHHHHHHHHHTSSEEEECSCEEEEEE-ECSSSEEEEEEECCT
T ss_pred ECCCHHHHHHHHHHHhcCCeEEEEEeCCccc---cCHHHHHHHHHhcccCCeEEEcCceeEEEE-cCCCceEEEEEEecc
Confidence 9999999999999999999999999987654 256777788888999999999999999998 4445666677754
Q ss_pred --C--CeeecCEEEEeeccccCccccccCCceeeCCCeEEeCCCc-----cccCCCEEEecccccCCCccCCCceeeeec
Q psy2951 1289 --G--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYL-----ETNVPGVYAGGDIAYAPLHSFYNKNASIGH 1359 (1466)
Q Consensus 1289 --g--~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~-----~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~ 1359 (1466)
| +++++|.||+|+|..|++++++ .++.++ +|++.||+++ +|+.|+|||+|||+..+.. .
T Consensus 227 ~~g~~~~i~~D~vv~a~G~~p~~~~~~-~~l~~~-~G~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~----------~ 294 (320)
T 1trb_A 227 NSDNIESLDVAGLFVAIGHSPNTAIFE-GQLELE-NGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYR----------Q 294 (320)
T ss_dssp TCCCCEEEECSEEEECSCEEESCGGGT-TTSCEE-TTEECCCCSSSSCTTBCSSTTEEECGGGGCSSSC----------C
T ss_pred CCCceEEEEcCEEEEEeCCCCChHHhc-cccccc-CceEEECCCcccccccCCCCCEEEcccccCCcch----------h
Confidence 4 5789999999999999999887 578888 8999999987 8999999999999987532 2
Q ss_pred HHHHHHHHHHHHHHhcC
Q psy2951 1360 YQLAQYHGRIAALNMVE 1376 (1466)
Q Consensus 1360 ~~~A~~qa~~aa~~i~g 1376 (1466)
+..|..||+.||.+|..
T Consensus 295 ~~~A~~~g~~aa~~i~~ 311 (320)
T 1trb_A 295 AITSAGTGCMAALDAER 311 (320)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhhhccHHHHHHHHHH
Confidence 47899999999999874
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.8e-30 Score=307.74 Aligned_cols=290 Identities=18% Similarity=0.230 Sum_probs=230.2
Q ss_pred CCeEEEEcCchHHHHHHHHHHH---cCCCccEEEEcCCCCCCCCCCccchhcc-cCcccccccCHhHhhhCCcEEEEceE
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQ---NGFTGKLYFITDENFLPYDRVKLSKQLD-IKADSILLRTEEFYKDNDIHVIKGKK 670 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~---~g~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~~~~~~~ 670 (1466)
+++|+|||||+||+++|..|++ .|++ |+++|+++.+.+.......... ...+++...+.+.+++.+++++.+ +
T Consensus 1 m~~VvIIGgG~aGl~aA~~L~~~~~~g~~--V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~-~ 77 (409)
T 3h8l_A 1 MTKVLVLGGRFGALTAAYTLKRLVGSKAD--VKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGIQFQEG-T 77 (409)
T ss_dssp -CEEEEECSSHHHHHHHHHHHHHHGGGSE--EEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGGGTCEEEEC-E
T ss_pred CCeEEEECCCHHHHHHHHHHHhhCCCCCe--EEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhhCCeEEEEe-e
Confidence 3689999999999999999999 7766 8999998765554332221112 455667777788888899999998 5
Q ss_pred EEEeccccccEEEccCCCE----EecCEEEEcCCCCCCcCCCCCCCC-cEEEecCHHHHHhhcccCCC-CCcEEEECCCh
Q psy2951 671 IISDSELNEKKIKLQDGTS----IDFTKIYLATGSSPRTISQADGVN-KVFYLRTVEDANNIAPHITP-ESNVVVIGSSF 744 (1466)
Q Consensus 671 v~~i~~~~~~~v~~~~~~~----~~~d~lviAtG~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~-~~~vvVvG~G~ 744 (1466)
|+.+ +.+.+.+.+.++.. +.||+||+|||++|..|+++ |.+ ..+...+.+++..+.+.+.. .++++|||+|.
T Consensus 78 v~~i-~~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~~~~~ip-G~~~~~~~~~~~~~~~~~~~~l~~~~~~~vViG~G~ 155 (409)
T 3h8l_A 78 VEKI-DAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATELVK-GWDKYGYSVCEPEFATKLREKLESFQGGNIAIGSGP 155 (409)
T ss_dssp EEEE-ETTTTEEEEECTTSCEEEEECSEEEECCCCEECGGGSB-THHHHCEESSSTTHHHHHHHHHHHCCSEEEEEEECC
T ss_pred EEEE-eCCCCEEEEccCCcccceeeCCEEEECCCCCcCccCCC-ChhhcCcCcCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 9999 88888888877654 99999999999999999898 876 56666777777666543322 26677999992
Q ss_pred -------------------------HHHHHH----HHHhccCC----eEEEEeecCccCccccCHHHHHHHHHHHHhcCc
Q psy2951 745 -------------------------IGMEAA----AFCASKVK----SVTVVGRGAVPFQESLGKEVGERITKLFESKGV 791 (1466)
Q Consensus 745 -------------------------~g~e~A----~~l~~~g~----~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv 791 (1466)
.++|+| ..+++.|. +|+++++.+ .+ +.+++++.+.+.+.+++.||
T Consensus 156 f~~~~~~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~~l~~~g~~~~~~v~~~~~~~-~l-~~~~~~~~~~~~~~l~~~gV 233 (409)
T 3h8l_A 156 FYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGE-YL-SDLSPNSRKAVASIYNQLGI 233 (409)
T ss_dssp BCCCCSSCCBSCTTSSCCCSCSSCHHHHHHHHHHHHHHHTTTCTTTEEEEEECSSS-SS-TTBCHHHHHHHHHHHHHHTC
T ss_pred cccCCCccccccccccCCCCcccCCHHHHHHHHHHHHHHHcCCCCCeEEEEEeCCc-cc-cccCHHHHHHHHHHHHHCCC
Confidence 466766 55667774 899999987 43 56789999999999999999
Q ss_pred EEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCccccccCCce-eeCCCcEEeCCCCCC-CCCCeEEec
Q psy2951 792 KFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVE-LNGQKAVVVNEYLET-NVPGVYAGG 869 (1466)
Q Consensus 792 ~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~-~~~~G~i~vd~~~~t-~~~~iya~G 869 (1466)
+++++++|++++.+ .+.+++|+++++|+||+++|++|+ .+++..++. .+++|++.||+++|| +.|||||+|
T Consensus 234 ~~~~~~~v~~i~~~------~v~~~~g~~~~~D~vi~a~G~~~~-~~l~~~~~~l~~~~G~i~vd~~~~~~~~~~vfa~G 306 (409)
T 3h8l_A 234 KLVHNFKIKEIREH------EIVDEKGNTIPADITILLPPYTGN-PALKNSTPDLVDDGGFIPTDLNMVSIKYDNVYAVG 306 (409)
T ss_dssp EEECSCCEEEECSS------EEEETTSCEEECSEEEEECCEECC-HHHHTSCGGGSCTTSCBCBBTTSBBSSCTTEEECG
T ss_pred EEEcCCceEEECCC------eEEECCCCEEeeeEEEECCCCCcc-HHHHhccccCcCCCCCEEeCcccccCCCCCEEEee
Confidence 99999999999832 377889999999999999999998 566666333 467899999999999 899999999
Q ss_pred cccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCC
Q psy2951 870 DIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK 907 (1466)
Q Consensus 870 D~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~ 907 (1466)
||+..+.+. .+..|..||+.+|+||.+..
T Consensus 307 D~~~~~~~~---------~~~~A~~q~~~aa~~i~~~l 335 (409)
T 3h8l_A 307 DANSMTVPK---------LGYLAVMTGRIAAQHLANRL 335 (409)
T ss_dssp GGBTTCCSC---------CHHHHHHHHHHHHHHHHHHT
T ss_pred hhccCCCCc---------HHHHHHHHHHHHHHHHHHHh
Confidence 999864433 56789999999999997543
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.3e-30 Score=295.65 Aligned_cols=280 Identities=14% Similarity=0.172 Sum_probs=203.6
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCC---CCCCCchhhccCcccccccChhhhccC-CcEEEcCC
Q psy2951 1065 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY---DRVKLSKQLDIKADSILLRTEEFYKDN-DIHVIKGK 1140 (1466)
Q Consensus 1065 ~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~ 1140 (1466)
..++|+||||||||++||..|++.|. +|+|||++..-+. ..+.+.........++.....+...++ .+.+...+
T Consensus 5 ~~yDVvIIGaGpAGlsAA~~lar~g~--~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (304)
T 4fk1_A 5 KYIDCAVIGAGPAGLNASLVLGRARK--QIALFDNNTNRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYYEKT 82 (304)
T ss_dssp -CEEEEEECCSHHHHHHHHHHHHTTC--CEEEEECSCCGGGGSSCBCCSTTCTTBCHHHHHHHHHHHHTTSTTEEEEECC
T ss_pred CCcCEEEECCCHHHHHHHHHHHHCCC--CEEEEeCCCCCCeeeeecCCccCCCCCCHHHHHHHHHHHHHhcCCEEEEeeE
Confidence 35789999999999999999999998 9999998742110 000000000001111111111222333 45665555
Q ss_pred eEEEee--cCCCCeEEecCCcEEecCeEEEecCCCCCcCCCCCCCC-----cEEEecCHHHHHhhhcccCCCCeEEEEcC
Q psy2951 1141 KIISDS--ELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-----KVFYLRTVEDANNIAPHITPESNVVVIGS 1213 (1466)
Q Consensus 1141 ~v~~i~--d~~~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~-----~v~~~~~~~~~~~l~~~~~~~~~vvVvG~ 1213 (1466)
+..+. +...+++.+.+|.++.||+||||||++|+.|++| |.+ ++++.. ..+. ....+++++|||+
T Consensus 83 -~~~~~~~~~~~~~v~~~~g~~~~a~~liiATGs~p~~p~i~-G~~~~~~~~v~~~~-~~~~-----~~~~~~~~~VIgg 154 (304)
T 4fk1_A 83 -VVMITKQSTGLFEIVTKDHTKYLAERVLLATGMQEEFPSIP-NVREYYGKSLFSCP-YCDG-----WELKDQPLIIISE 154 (304)
T ss_dssp -EEEEEECTTSCEEEEETTCCEEEEEEEEECCCCEEECCSCT-THHHHBTTTEESCH-HHHS-----GGGTTSCEEEECC
T ss_pred -EEEeeecCCCcEEEEECCCCEEEeCEEEEccCCcccccccc-Cccccccceeeecc-ccch-----hHhcCCceeeecC
Confidence 55551 2234578889999999999999999999999999 865 344332 1111 1223677888887
Q ss_pred CH-HHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCee
Q psy2951 1214 SF-IGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTI 1292 (1466)
Q Consensus 1214 g~-~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i 1292 (1466)
|. .++|+|..+++.+.+|+++.+.+... +.+.+.+++.|+.++.+. ++.+. .+++++..|++++|+++
T Consensus 155 G~~~~~e~a~~~~~~~~~v~i~~~~~~~~---------~~~~~~l~~~g~~~~~~~-v~~~~-~~~~~~~~v~~~~g~~i 223 (304)
T 4fk1_A 155 NEDHTLHMTKLVYNWSTDLVIATNGNELS---------QTIMDELSNKNIPVITES-IRTLQ-GEGGYLKKVEFHSGLRI 223 (304)
T ss_dssp SHHHHHHHHHHHTTTCSCEEEECSSCCCC---------HHHHHHHHTTTCCEECSC-EEEEE-SGGGCCCEEEETTSCEE
T ss_pred CCchhhhHHHHHHhCCceEEEEeccccch---------hhhhhhhhccceeEeeee-EEEee-cCCCeeeeeecccccee
Confidence 75 56899999999999999998876433 234566888999998764 77787 56667788999999999
Q ss_pred ecCEEEEeeccccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHH
Q psy2951 1293 PADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAAL 1372 (1466)
Q Consensus 1293 ~~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~ 1372 (1466)
++|.+++++|..|+.+++++.|++++.+|+|.||+++|||.|+|||+|||+..+.. ++..|..||+.||.
T Consensus 224 ~~~~~vi~~g~~~~~~~~~~~g~~~~~~G~I~vd~~~~Ts~p~IyA~GDv~~~~~~----------~~~~A~~~G~~AA~ 293 (304)
T 4fk1_A 224 ERAGGFIVPTFFRPNQFIEQLGCELQSNGTFVIDDFGRTSEKNIYLAGETTTQGPS----------SLIIAASQGNKAAI 293 (304)
T ss_dssp CCCEEEECCEEECSSCHHHHTTCCCCTTSSSCSSTTCBCSSTTEEECSHHHHTSCC----------CHHHHHHHHHHHHH
T ss_pred eecceeeeeccccCChhhhhcCeEECCCCCEEECcCCccCCCCEEEEeccCCCcch----------HHHHHHHHHHHHHH
Confidence 99999998888888788999999999999999999999999999999999975432 13679999999998
Q ss_pred Hhc
Q psy2951 1373 NMV 1375 (1466)
Q Consensus 1373 ~i~ 1375 (1466)
+|.
T Consensus 294 ~i~ 296 (304)
T 4fk1_A 294 AIN 296 (304)
T ss_dssp HHH
T ss_pred HHH
Confidence 774
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-29 Score=296.96 Aligned_cols=288 Identities=18% Similarity=0.225 Sum_probs=210.1
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcC----CCCCCCCCCccc---h--hc--ccCcccccccCHhHhhhCCc
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITD----ENFLPYDRVKLS---K--QL--DIKADSILLRTEEFYKDNDI 663 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~----~~~~~~~~~~~~---~--~~--~~~~~~~~~~~~~~~~~~gv 663 (1466)
.++|+||||||||+++|+.|++.|++ |+++|+ ....+....... . .+ .....++...+.+.+.+.++
T Consensus 8 ~~~vvIIG~G~aGl~~A~~l~~~g~~--v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv 85 (333)
T 1vdc_A 8 NTRLCIVGSGPAAHTAAIYAARAELK--PLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGT 85 (333)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCC--CEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCe--EEEEeccCccccCCCceeeeccccccCCCCccCCCHHHHHHHHHHHHHHCCC
Confidence 47999999999999999999999988 777777 222221110000 0 00 01223445555667778899
Q ss_pred EEEEceEEEEeccccc--cEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCCc---EEEecCHHHHHhhcccC--CCCCc
Q psy2951 664 HVIKGKKIISDSELNE--KKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNK---VFYLRTVEDANNIAPHI--TPESN 736 (1466)
Q Consensus 664 ~~~~~~~v~~i~~~~~--~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~--~~~~~ 736 (1466)
+++.++ |..+ +... ..+.+ ++.++.||+||+|||+.|..|+++ |.+. .+....+..+..+.... ..+++
T Consensus 86 ~~~~~~-v~~i-~~~~~~~~v~~-~~~~~~~~~vv~A~G~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (333)
T 1vdc_A 86 TIFTET-VTKV-DFSSKPFKLFT-DSKAILADAVILAIGAVAKRLSFV-GSGEVLGGFWNRGISACAVCDGAAPIFRNKP 161 (333)
T ss_dssp EEECCC-CCEE-ECSSSSEEEEC-SSEEEEEEEEEECCCEEECCCCCB-TCSSSSSCCBTTTEESCHHHHTTSGGGTTSE
T ss_pred EEEEeE-EEEE-EEcCCEEEEEE-CCcEEEcCEEEECCCCCcCCCCCC-CccccccccccCcEEEeccCccchhhcCCCe
Confidence 999998 8777 4433 36666 678899999999999999988888 7542 12111111111112222 45899
Q ss_pred EEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCC-ceEEEEC
Q psy2951 737 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKN-DVTAANL 815 (1466)
Q Consensus 737 vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~-~~~~v~~ 815 (1466)
|+|||+|.+|+|+|..|++.+.+|+++++.+.+.. .+.+ ..+.+++.||+++++++++++..++++ ++..+.+
T Consensus 162 v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~---~~~~---~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~ 235 (333)
T 1vdc_A 162 LAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA---SKIM---QQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKV 235 (333)
T ss_dssp EEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS---CHHH---HHHHHTCTTEEEECSEEEEEEEESSSSSSEEEEEE
T ss_pred EEEECCChHHHHHHHHHHhcCCeEEEEecCCcCCc---cHHH---HHHHHhCCCeeEecCCceEEEeCCCCccceeeEEE
Confidence 99999999999999999999999999999876532 2221 224456789999999999999844321 4444554
Q ss_pred C---CC--cEEecCEEEEccccccCccccccCCceeeCCCcEEeCCC-CCCCCCCeEEeccccccCCcccCCceeeeccH
Q psy2951 816 D---NG--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEY-LETNVPGVYAGGDIAYAPLHSFYNKNASIGHY 889 (1466)
Q Consensus 816 ~---~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~-~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~ 889 (1466)
. +| +++++|.||+|+|++|++++++ .+++++++|+|.+|++ ++|+.|+|||+|||+..+. ..+
T Consensus 236 ~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~-~~l~~~~~G~i~vd~~~~~t~~~~vya~GD~~~~~~----------~~~ 304 (333)
T 1vdc_A 236 KNVVTGDVSDLKVSGLFFAIGHEPATKFLD-GGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKY----------RQA 304 (333)
T ss_dssp EETTTCCEEEEECSEEEECSCEEESCGGGT-TSSCBCTTSCBCCCTTSCBCSSTTEEECGGGGCSSC----------CCH
T ss_pred EecCCCceEEEecCEEEEEeCCccchHHhh-ccccccCCCCEEechhhcccCCCCEEEeeeccCCCc----------hhH
Confidence 3 44 5799999999999999998887 4788888899999987 6899999999999998642 145
Q ss_pred HHHHHHHHHHHHHhcc
Q psy2951 890 QLAQYHGRIAALNMVE 905 (1466)
Q Consensus 890 ~~A~~~g~~aA~~i~~ 905 (1466)
..|..||+.||.+|..
T Consensus 305 ~~A~~~g~~aa~~i~~ 320 (333)
T 1vdc_A 305 ITAAGTGCMAALDAEH 320 (333)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHH
Confidence 7899999999999974
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-29 Score=311.44 Aligned_cols=283 Identities=22% Similarity=0.314 Sum_probs=217.9
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCC---ccchhc---ccCcccccccCHhHhhhCCcEE
Q psy2951 592 SGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV---KLSKQL---DIKADSILLRTEEFYKDNDIHV 665 (1466)
Q Consensus 592 ~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~gv~~ 665 (1466)
....+||+||||||||++||..|++.|++ ++++++.. ++... ...... .....++...+.+.+++.|+++
T Consensus 209 ~~~~~dVvIIGgG~AGl~aA~~la~~G~~--v~lie~~~--GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~v 284 (521)
T 1hyu_A 209 KRDAYDVLIVGSGPAGAAAAVYSARKGIR--TGLMGERF--GGQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDV 284 (521)
T ss_dssp TSCCEEEEEECCSHHHHHHHHHHHHTTCC--EEEECSST--TGGGTTCSCBCCBTTBSSBCHHHHHHHHHHHHHTSCEEE
T ss_pred ccCcccEEEECCcHHHHHHHHHHHhCCCe--EEEEECCC--CCcccccccccccCCCCCCCHHHHHHHHHHHHHHcCCEE
Confidence 34578999999999999999999999988 67776531 11110 011011 1223345555666777889999
Q ss_pred EEceEEEEecccc-----ccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCC-----cEEEecCHHHHHhhcccCCCCC
Q psy2951 666 IKGKKIISDSELN-----EKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-----KVFYLRTVEDANNIAPHITPES 735 (1466)
Q Consensus 666 ~~~~~v~~i~~~~-----~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~ 735 (1466)
+.+++|..+ +.. .+.+.+.++.++.||+||+|||+.|+.|++| |.+ .+++... +......++
T Consensus 285 ~~~~~v~~i-~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~~~~ip-G~~~~~~~~v~~~~~------~~~~~~~~k 356 (521)
T 1hyu_A 285 IDSQSASKL-VPAATEGGLHQIETASGAVLKARSIIIATGAKWRNMNVP-GEDQYRTKGVTYCPH------CDGPLFKGK 356 (521)
T ss_dssp ECSCCEEEE-ECCSSTTSCEEEEETTSCEEEEEEEEECCCEEECCCCCT-TTTTTTTTTEECCTT------CCGGGGBTS
T ss_pred EcCCEEEEE-EeccCCCceEEEEECCCCEEEcCEEEECCCCCcCCCCCC-ChhhhcCceEEEeec------CchhhcCCC
Confidence 999889888 432 4678888888999999999999999988888 764 2332211 122233589
Q ss_pred cEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHh-cCcEEEccceEEEEEecCCCceEEEE
Q psy2951 736 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFES-KGVKFVMKANVSSFEKNEKNDVTAAN 814 (1466)
Q Consensus 736 ~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~-~gv~~~~~~~v~~i~~~~~~~~~~v~ 814 (1466)
+|+|||+|++|+|+|..|++.+.+|+++++.+.+.. + ..+.+.+++ .||+++++++++++.. +++++..+.
T Consensus 357 ~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~---~----~~l~~~l~~~~gV~v~~~~~v~~i~~-~~~~v~~v~ 428 (521)
T 1hyu_A 357 RVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA---D----QVLQDKVRSLKNVDIILNAQTTEVKG-DGSKVVGLE 428 (521)
T ss_dssp EEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCCS---C----HHHHHHHTTCTTEEEECSEEEEEEEE-CSSSEEEEE
T ss_pred eEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccCc---C----HHHHHHHhcCCCcEEEeCCEEEEEEc-CCCcEEEEE
Confidence 999999999999999999999999999999886542 2 345666777 6999999999999984 344555555
Q ss_pred CC---CCc--EEecCEEEEccccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccH
Q psy2951 815 LD---NGT--TIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHY 889 (1466)
Q Consensus 815 ~~---~g~--~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~ 889 (1466)
+. +|+ ++++|.|++++|++|++++++. .++++++|+|.||++++|+.|+|||+|||+..+.. .+
T Consensus 429 ~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~-~l~~~~~G~I~Vd~~~~ts~p~VfA~GD~~~~~~~----------~~ 497 (521)
T 1hyu_A 429 YRDRVSGDIHSVALAGIFVQIGLLPNTHWLEG-ALERNRMGEIIIDAKCETSVKGVFAAGDCTTVPYK----------QI 497 (521)
T ss_dssp EEETTTCCEEEEECSEEEECCCEEESCGGGTT-TSCBCTTSCBCCCTTCBCSSTTEEECSTTBCCSSC----------CH
T ss_pred EEeCCCCceEEEEcCEEEECcCCCCCchHHhh-hhccCCCCcEEeCCCCCCCCCCEEEeecccCCCcc----------ee
Confidence 54 353 6899999999999999998876 48888899999999999999999999999987532 35
Q ss_pred HHHHHHHHHHHHHhcc
Q psy2951 890 QLAQYHGRIAALNMVE 905 (1466)
Q Consensus 890 ~~A~~~g~~aA~~i~~ 905 (1466)
..|+.||+.||.+|+.
T Consensus 498 ~~A~~~g~~aa~~i~~ 513 (521)
T 1hyu_A 498 IIATGEGAKASLSAFD 513 (521)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eehHHhHHHHHHHHHH
Confidence 7899999999999864
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-29 Score=293.46 Aligned_cols=283 Identities=18% Similarity=0.204 Sum_probs=211.2
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEE-EcCCCCCCCCC---CCCchhh----ccCcccccccChhhhccCCcEE
Q psy2951 1065 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYF-ITDENFLPYDR---VKLSKQL----DIKADSILLRTEEFYKDNDIHV 1136 (1466)
Q Consensus 1065 ~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~l-i~~~~~~~~~~---~~l~~~~----~~~~~~~~~~~~~~~~~~~v~~ 1136 (1466)
.+++|+|||||+||++||..|++.|+ +|+| +|++. ++... ..+.... .....++.....+++++.++++
T Consensus 3 ~~~~vvIIG~G~aGl~aA~~l~~~g~--~v~li~e~~~-~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 79 (315)
T 3r9u_A 3 AMLDVAIIGGGPAGLSAGLYATRGGL--KNVVMFEKGM-PGGQITSSSEIENYPGVAQVMDGISFMAPWSEQCMRFGLKH 79 (315)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHHTC--SCEEEECSSS-TTGGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHTTTCCEE
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCC--CeEEEEeCCC-CCceeeeeceeccCCCCCCCCCHHHHHHHHHHHHHHcCcEE
Confidence 35789999999999999999999998 8999 99842 22110 0000000 0112223333345677789999
Q ss_pred EcCCeEEEeecCC---CCeEEecCCcEEecCeEEEecCCCCCcCCCCCCCC-----cEEEecCHHHHHhhhcccCCCCeE
Q psy2951 1137 IKGKKIISDSELN---EKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-----KVFYLRTVEDANNIAPHITPESNV 1208 (1466)
Q Consensus 1137 ~~~~~v~~i~d~~---~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~-----~v~~~~~~~~~~~l~~~~~~~~~v 1208 (1466)
+.+ +|..+ ... ...+.+..+.++.||+||+|||+.|+.+++| |.+ .++..... ......++++
T Consensus 80 ~~~-~v~~i-~~~~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~-g~~~~~~~~~~~~~~~------~~~~~~~~~v 150 (315)
T 3r9u_A 80 EMV-GVEQI-LKNSDGSFTIKLEGGKTELAKAVIVCTGSAPKKAGFK-GEDEFFGKGVSTCATC------DGFFYKNKEV 150 (315)
T ss_dssp ECC-CEEEE-EECTTSCEEEEETTSCEEEEEEEEECCCEEECCCCCB-TTTTTBTTTEESCHHH------HGGGGTTSEE
T ss_pred EEE-EEEEE-ecCCCCcEEEEEecCCEEEeCEEEEeeCCCCCCCCCC-ChhhcCCCeEEeeecc------cccccCcCEE
Confidence 988 57776 322 2232143222899999999999999999888 765 34433211 1222347999
Q ss_pred EEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcC-
Q psy2951 1209 VVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLD- 1287 (1466)
Q Consensus 1209 vVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~- 1287 (1466)
+|||+|.+|+|+|..|++.+.+|+++++.+.+.. .+ +.+.+.+++.||++++++.+.++. .+++++..|.+.
T Consensus 151 ~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~~---~~---~~~~~~~~~~gv~~~~~~~v~~i~-~~~~~~~~v~~~~ 223 (315)
T 3r9u_A 151 AVLGGGDTALEEALYLANICSKIYLIHRRDEFRA---AP---STVEKVKKNEKIELITSASVDEVY-GDKMGVAGVKVKL 223 (315)
T ss_dssp EEECCBHHHHHHHHHHHTTSSEEEEECSSSSCBS---CH---HHHHHHHHCTTEEEECSCEEEEEE-EETTEEEEEEEEC
T ss_pred EEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCCC---CH---HHHHHHHhcCCeEEEeCcEEEEEE-cCCCcEEEEEEEc
Confidence 9999999999999999999999999999876532 22 334556678999999999999998 455566666665
Q ss_pred -CCC--eeecCEEEEeeccccCcccccc---CC-ceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecH
Q psy2951 1288 -NGT--TIPADLVIVGIGTVLNTNYLDG---KG-VELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHY 1360 (1466)
Q Consensus 1288 -~g~--~i~~D~vv~a~G~~p~~~~~~~---~g-l~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~ 1360 (1466)
+|+ ++++|.||+++|..|++++++. .| +.++.+|+|.||++++|+.|+|||+|||+..+. ..+
T Consensus 224 ~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~g~l~~~~~g~i~vd~~~~t~~~~v~a~GD~~~~~~----------~~~ 293 (315)
T 3r9u_A 224 KDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLKMQTSVAGLFAAGDLRKDAP----------KQV 293 (315)
T ss_dssp TTSCEEEECCSCEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTCBCSSTTEEECGGGBTTCC----------CCH
T ss_pred CCCCeEEeecCeEEEEEcCCCCchhhhcccccceeeecCCCcEEeCCCcccCCCCEEEeecccCCch----------hhh
Confidence 886 7899999999999999998876 55 888888999999999999999999999986432 134
Q ss_pred HHHHHHHHHHHHHhcC
Q psy2951 1361 QLAQYHGRIAALNMVE 1376 (1466)
Q Consensus 1361 ~~A~~qa~~aa~~i~g 1376 (1466)
..|..||+.||.+|+.
T Consensus 294 ~~A~~~g~~aa~~i~~ 309 (315)
T 3r9u_A 294 ICAAGDGAVAALSAMA 309 (315)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHhhHHHHHHHHHH
Confidence 8899999999999873
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-30 Score=311.06 Aligned_cols=331 Identities=20% Similarity=0.194 Sum_probs=226.5
Q ss_pred CCCCeeecC--CCCCCCCeEEEEEEcCeEEEEEcccchhccc---cccccccccCCCCCCeEEEEcCchHHHHHHHHHHH
Q psy2951 542 IATGDIEDF--PGMDSLPCYKVTIQNDDSVVVQARKDELKNK---KRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQ 616 (1466)
Q Consensus 542 ~~~G~~~~~--p~~~~l~~~~v~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~vvVIGgG~AGl~aA~~l~~ 616 (1466)
.-+|++|.. ||...+..-. ..++.+.+...++.+.+. ..+.+...+.....++|+|||||||||+||+.|++
T Consensus 67 ~~~grvCp~~~~Ce~~C~~~~---~~~~~v~I~~le~~~~~~~~~~~~~~~~~~~~~~~~~V~IIGgGpAGl~aA~~L~~ 143 (456)
T 2vdc_G 67 EICGRICPQDRLCEGNCVIEQ---STHGAVTIGSVEKYINDTAWDQGWVKPRTPSRELGLSVGVIGAGPAGLAAAEELRA 143 (456)
T ss_dssp HHHHHHCCGGGSGGGGCGGGG---SSSCSCCHHHHHHHHHHHHHHHTCCCCCCSCSSCCCCEEEECCSHHHHHHHHHHHH
T ss_pred ccccccCCCCcchHHhcccCC---CCCCCccHHHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECCCHHHHHHHHHHHH
Confidence 345777777 7875322110 013334344444433322 12332222233567899999999999999999999
Q ss_pred cCCCccEEEEcCCCCCCCCCCccchhcccCcccccccCHhHhhhCCcEEEEceEEEEeccccccEEEccCCCEEecCEEE
Q psy2951 617 NGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIY 696 (1466)
Q Consensus 617 ~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~d~lv 696 (1466)
+|++ |+++|+.+.+++....-...+ ....++..+..+++++.|+++++++.+. +.+++++. .+.||+||
T Consensus 144 ~G~~--V~v~e~~~~~GG~l~~gip~~-~~~~~~~~~~~~~l~~~gv~~~~~~~v~-------~~v~~~~~-~~~~d~vv 212 (456)
T 2vdc_G 144 KGYE--VHVYDRYDRMGGLLVYGIPGF-KLEKSVVERRVKLLADAGVIYHPNFEVG-------RDASLPEL-RRKHVAVL 212 (456)
T ss_dssp HTCC--EEEECSSSSCSTHHHHTSCTT-TSCHHHHHHHHHHHHHTTCEEETTCCBT-------TTBCHHHH-HSSCSEEE
T ss_pred CCCe--EEEEeccCCCCCeeeecCCCc-cCCHHHHHHHHHHHHHCCcEEEeCCEec-------cEEEhhHh-HhhCCEEE
Confidence 9987 889998865542211000000 1223455666778888999999998542 11222222 35799999
Q ss_pred EcCCCC-CCcCCCCCCCC--cEEEecCHHHHHh---hcc---------cCCCCCcEEEECCChHHHHHHHHHhccCC-eE
Q psy2951 697 LATGSS-PRTISQADGVN--KVFYLRTVEDANN---IAP---------HITPESNVVVIGSSFIGMEAAAFCASKVK-SV 760 (1466)
Q Consensus 697 iAtG~~-~~~~~~~~g~~--~~~~~~~~~~~~~---~~~---------~~~~~~~vvVvG~G~~g~e~A~~l~~~g~-~V 760 (1466)
||||+. |+.++++ |.+ +++....+..... +.. ....+|+|+|||+|++|+|+|..+.+.|. +|
T Consensus 213 lAtG~~~~~~~~ip-G~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~V 291 (456)
T 2vdc_G 213 VATGVYKARDIKAP-GSGLGNIVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGGDTAMDCVRTAIRQGATSV 291 (456)
T ss_dssp ECCCCCEECCTTCS-CCTTTTEEEHHHHHHHHHHHHCTTTCSSCCTTCSCCCCSEEEEECSSHHHHHHHHHHHHTTCSEE
T ss_pred EecCCCCCCCCCCC-CCcCCCcEEHHHHHHHhhhhhcccccccccccccccCCCEEEEECCChhHHHHHHHHHHcCCCEE
Confidence 999986 7788888 765 5655333222111 111 11458999999999999999999999987 59
Q ss_pred EEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEEC---------C---------CC--cE
Q psy2951 761 TVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANL---------D---------NG--TT 820 (1466)
Q Consensus 761 ~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~---------~---------~g--~~ 820 (1466)
++++|.+....+..+.+ .+.+++.||+++++..+++|.. ++++..+.+ . +| .+
T Consensus 292 tiv~r~~~~~~p~~~~e-----~~~~~~~Gv~~~~~~~~~~i~~--~g~v~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~ 364 (456)
T 2vdc_G 292 KCLYRRDRKNMPGSQRE-----VAHAEEEGVEFIWQAAPEGFTG--DTVVTGVRAVRIHLGVADATGRQTPQVIEGSEFT 364 (456)
T ss_dssp EEECSSCSTTCSSCHHH-----HHHHHHTTCEEECCSSSCCEEE--EEEEETTEEEEEEEEEEEECTTCCEEEEEEEEEE
T ss_pred EEEEeCCccCCCCCHHH-----HHHHHHCCCEEEeCCCceEEeC--CCcEEEEEEEEEEecccCCcCCccccccCCcEEE
Confidence 99999886522333332 3457788999999999988873 232211111 1 22 47
Q ss_pred EecCEEEEccccccCcc--ccccCCceeeCCCcEEeCCC-CCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHH
Q psy2951 821 IPADLVIVGIGTVLNTN--YLDGKGVELNGQKAVVVNEY-LETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGR 897 (1466)
Q Consensus 821 i~~D~vi~a~G~~p~~~--~~~~~gl~~~~~G~i~vd~~-~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~ 897 (1466)
+++|+||+|+|+.|++. +++..+++++++|+|.+|++ ++|+.|+|||+|||+..+. ++..|+.||+
T Consensus 365 i~aD~Vi~A~G~~p~~~~~~l~~~gl~~~~~G~i~vd~~~~~Ts~~~VfA~GD~~~g~~-----------~v~~A~~~G~ 433 (456)
T 2vdc_G 365 VQADLVIKALGFEPEDLPNAFDEPELKVTRWGTLLVDHRTKMTNMDGVFAAGDIVRGAS-----------LVVWAIRDGR 433 (456)
T ss_dssp EECSEEEECSCEECCCHHHHHHSTTSCBCTTSSBCCCTTTCBCSSTTEEECGGGGSSCC-----------SHHHHHHHHH
T ss_pred EECCEEEECCCCCCCcchhhcccCCeeECCCCCEEECCCCCcCCCCCEEEeccccCCch-----------HHHHHHHHHH
Confidence 99999999999999875 78888999999999999987 9999999999999987654 3479999999
Q ss_pred HHHHHhcc
Q psy2951 898 IAALNMVE 905 (1466)
Q Consensus 898 ~aA~~i~~ 905 (1466)
.||.+|..
T Consensus 434 ~aA~~i~~ 441 (456)
T 2vdc_G 434 DAAEGIHA 441 (456)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999974
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-29 Score=296.11 Aligned_cols=281 Identities=20% Similarity=0.261 Sum_probs=209.8
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCcc---ch--hc--ccCcccccccCHhHhhhCCcEE
Q psy2951 593 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKL---SK--QL--DIKADSILLRTEEFYKDNDIHV 665 (1466)
Q Consensus 593 ~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~---~~--~~--~~~~~~~~~~~~~~~~~~gv~~ 665 (1466)
...+||+||||||||+++|+.|++.|++ |+++|+.. .++..... .. .+ .....++..++.+.+.+.++++
T Consensus 12 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~--v~lie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~ 88 (335)
T 2a87_A 12 HPVRDVIVIGSGPAGYTAALYAARAQLA--PLVFEGTS-FGGALMTTTDVENYPGFRNGITGPELMDEMREQALRFGADL 88 (335)
T ss_dssp CCCEEEEEECCHHHHHHHHHHHHHTTCC--CEEECCSS-CSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHHHHHHTTCEE
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCe--EEEEecCC-CCCceeccchhhhcCCCCCCCCHHHHHHHHHHHHHHcCCEE
Confidence 3468999999999999999999999988 67777642 11110000 00 01 1223345556666777889999
Q ss_pred EEceEEEEeccc-cccEE-EccCCCEEecCEEEEcCCCCCCcCCCCCCCC-----cEEEecCHHHHHhhcccCCCCCcEE
Q psy2951 666 IKGKKIISDSEL-NEKKI-KLQDGTSIDFTKIYLATGSSPRTISQADGVN-----KVFYLRTVEDANNIAPHITPESNVV 738 (1466)
Q Consensus 666 ~~~~~v~~i~~~-~~~~v-~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~vv 738 (1466)
+.++ |..+ +. ....+ .++++.++.||+||+|||+.|..|+++ |.+ .++.. .... ..+..+++|+
T Consensus 89 ~~~~-v~~i-~~~~~~~v~~~~~g~~~~~d~lviAtG~~~~~~~i~-g~~~~~~~~~~~~---~~~~---~~~~~~~~v~ 159 (335)
T 2a87_A 89 RMED-VESV-SLHGPLKSVVTADGQTHRARAVILAMGAAARYLQVP-GEQELLGRGVSSC---ATCD---GFFFRDQDIA 159 (335)
T ss_dssp ECCC-EEEE-ECSSSSEEEEETTSCEEEEEEEEECCCEEECCCCCT-HHHHTBTTTEESC---HHHH---GGGGTTCEEE
T ss_pred EEee-EEEE-EeCCcEEEEEeCCCCEEEeCEEEECCCCCccCCCCC-chHhccCCceEEe---eccc---hhhcCCCEEE
Confidence 9998 8888 44 33467 777788999999999999999988888 653 12221 1211 2234589999
Q ss_pred EECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHH-HHHHhcCcEEEccceEEEEEecCCCceEEEECC-
Q psy2951 739 VIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERIT-KLFESKGVKFVMKANVSSFEKNEKNDVTAANLD- 816 (1466)
Q Consensus 739 VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~-~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~- 816 (1466)
|||+|++|+|+|..|++.+.+|+++++.+.+.. . +.+. +.+++.||++++++++++++.++ ++..+.+.
T Consensus 160 ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~~---~----~~~~~~~~~~~gV~v~~~~~v~~i~~~~--~~~~v~~~~ 230 (335)
T 2a87_A 160 VIGGGDSAMEEATFLTRFARSVTLVHRRDEFRA---S----KIMLDRARNNDKIRFLTNHTVVAVDGDT--TVTGLRVRD 230 (335)
T ss_dssp EECSSHHHHHHHHHHTTTCSEEEEECSSSSCSS---C----TTHHHHHHHCTTEEEECSEEEEEEECSS--SCCEEEEEE
T ss_pred EECCCHHHHHHHHHHHHhCCeEEEEEcCCcCCc---c----HHHHHHHhccCCcEEEeCceeEEEecCC--cEeEEEEEE
Confidence 999999999999999999999999999876532 1 1222 44567899999999999998432 33233332
Q ss_pred --CC--cEEecCEEEEccccccCccccccCCceeeCCCcEEeCCC-CCCCCCCeEEeccccccCCcccCCceeeeccHHH
Q psy2951 817 --NG--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEY-LETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQL 891 (1466)
Q Consensus 817 --~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~-~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~ 891 (1466)
+| +++++|.||+|+|++|++++++ .+++++++|+|.+|++ ++|+.|+|||+|||+..+. ..+..
T Consensus 231 ~~~g~~~~i~~D~vi~a~G~~p~~~~~~-~~l~~~~~G~i~vd~~~~~t~~~~iya~GD~~~~~~----------~~~~~ 299 (335)
T 2a87_A 231 TNTGAETTLPVTGVFVAIGHEPRSGLVR-EAIDVDPDGYVLVQGRTTSTSLPGVFAAGDLVDRTY----------RQAVT 299 (335)
T ss_dssp ETTSCCEEECCSCEEECSCEEECCTTTB-TTBCBCTTSCBCCSTTSSBCSSTTEEECGGGTCCSC----------CCHHH
T ss_pred cCCCceEEeecCEEEEccCCccChhHhh-cccccCCCccEEeCCCCCccCCCCEEEeeecCCccH----------HHHHH
Confidence 34 5799999999999999998887 5788888999999986 6899999999999997642 14578
Q ss_pred HHHHHHHHHHHhcc
Q psy2951 892 AQYHGRIAALNMVE 905 (1466)
Q Consensus 892 A~~~g~~aA~~i~~ 905 (1466)
|..||+.||.+|..
T Consensus 300 A~~~g~~aA~~i~~ 313 (335)
T 2a87_A 300 AAGSGCAAAIDAER 313 (335)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHH
Confidence 99999999999864
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.2e-29 Score=292.39 Aligned_cols=285 Identities=19% Similarity=0.233 Sum_probs=210.0
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcC----CCCCCCC---------CCCCchhhccCcccccccChhhhccC
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITD----ENFLPYD---------RVKLSKQLDIKADSILLRTEEFYKDN 1132 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~----~~~~~~~---------~~~l~~~~~~~~~~~~~~~~~~~~~~ 1132 (1466)
+++|+|||||++|+++|..|++.|. +|+|||+ ....+.. .+.++..+ ....+.....+++.+.
T Consensus 8 ~~~vvIIG~G~aGl~~A~~l~~~g~--~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~ 83 (333)
T 1vdc_A 8 NTRLCIVGSGPAAHTAAIYAARAEL--KPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGI--LGVELTDKFRKQSERF 83 (333)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTC--CCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCE--EHHHHHHHHHHHHHHT
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCC--eEEEEeccCccccCCCceeeeccccccCCCCccCC--CHHHHHHHHHHHHHHC
Confidence 3689999999999999999999998 9999998 2222110 11111000 1111222223456667
Q ss_pred CcEEEcCCeEEEeecCCCC--eEEecCCcEEecCeEEEecCCCCCcCCCCCCCCc---EEEecCHHHHHhhhccc--CCC
Q psy2951 1133 DIHVIKGKKIISDSELNEK--KIKLQDGTSIDFTKIYLATGSSPRTISQADGVNK---VFYLRTVEDANNIAPHI--TPE 1205 (1466)
Q Consensus 1133 ~v~~~~~~~v~~i~d~~~~--~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~~---v~~~~~~~~~~~l~~~~--~~~ 1205 (1466)
+++++.++ |..+ +...+ +|.+ ++.++.||+||+|||+.|+.+++| |.+. ++..+....+..+...+ ..+
T Consensus 84 gv~~~~~~-v~~i-~~~~~~~~v~~-~~~~~~~~~vv~A~G~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (333)
T 1vdc_A 84 GTTIFTET-VTKV-DFSSKPFKLFT-DSKAILADAVILAIGAVAKRLSFV-GSGEVLGGFWNRGISACAVCDGAAPIFRN 159 (333)
T ss_dssp TCEEECCC-CCEE-ECSSSSEEEEC-SSEEEEEEEEEECCCEEECCCCCB-TCSSSSSCCBTTTEESCHHHHTTSGGGTT
T ss_pred CCEEEEeE-EEEE-EEcCCEEEEEE-CCcEEEcCEEEECCCCCcCCCCCC-CccccccccccCcEEEeccCccchhhcCC
Confidence 99999987 9999 87655 5666 778899999999999999988888 7542 12111111111112222 458
Q ss_pred CeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCC--cEEE
Q psy2951 1206 SNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKN--DVTA 1283 (1466)
Q Consensus 1206 ~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g--~~~~ 1283 (1466)
++|+|||+|.+|+|+|..|++.|.+|+++++.+.+.. .+. ...+.+++.||+++++++++++. .+++ ++..
T Consensus 160 ~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~---~~~---~~~~~~~~~gv~i~~~~~v~~i~-~~~~~~~v~~ 232 (333)
T 1vdc_A 160 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA---SKI---MQQRALSNPKIDVIWNSSVVEAY-GDGERDVLGG 232 (333)
T ss_dssp SEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS---CHH---HHHHHHTCTTEEEECSEEEEEEE-ESSSSSSEEE
T ss_pred CeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCCc---cHH---HHHHHHhCCCeeEecCCceEEEe-CCCCccceee
Confidence 9999999999999999999999999999999875532 122 12345678999999999999998 3433 5555
Q ss_pred EEcC---CC--CeeecCEEEEeeccccCccccccCCceeeCCCeEEeCCC-ccccCCCEEEecccccCCCccCCCceeee
Q psy2951 1284 ANLD---NG--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEY-LETNVPGVYAGGDIAYAPLHSFYNKNASI 1357 (1466)
Q Consensus 1284 v~l~---~g--~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~-~~t~~~~v~a~GD~a~~p~~~~~~~~~~~ 1357 (1466)
|.+. +| +++++|.||+++|..|++++++ .++.++.+|+|.||++ ++|+.|+|||+|||+..+..
T Consensus 233 v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~-~~l~~~~~G~i~vd~~~~~t~~~~vya~GD~~~~~~~--------- 302 (333)
T 1vdc_A 233 LKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLD-GGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYR--------- 302 (333)
T ss_dssp EEEEETTTCCEEEEECSEEEECSCEEESCGGGT-TSSCBCTTSCBCCCTTSCBCSSTTEEECGGGGCSSCC---------
T ss_pred EEEEecCCCceEEEecCEEEEEeCCccchHHhh-ccccccCCCCEEechhhcccCCCCEEEeeeccCCCch---------
Confidence 6664 45 5789999999999999999887 5788888899999986 68999999999999987522
Q ss_pred ecHHHHHHHHHHHHHHhcC
Q psy2951 1358 GHYQLAQYHGRIAALNMVE 1376 (1466)
Q Consensus 1358 ~~~~~A~~qa~~aa~~i~g 1376 (1466)
.+..|..||+.||.+|+.
T Consensus 303 -~~~~A~~~g~~aa~~i~~ 320 (333)
T 1vdc_A 303 -QAITAAGTGCMAALDAEH 320 (333)
T ss_dssp -CHHHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHhHHHHHHHHHH
Confidence 247899999999999884
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-28 Score=302.82 Aligned_cols=284 Identities=22% Similarity=0.326 Sum_probs=218.3
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCC-CCCCCCCchhhc---cCcccccccChhhhccCCcEEEcC
Q psy2951 1064 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFL-PYDRVKLSKQLD---IKADSILLRTEEFYKDNDIHVIKG 1139 (1466)
Q Consensus 1064 ~~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~-~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~ 1139 (1466)
...++|+|||||+||++||..|++.|. +|+|||+...- .+....+..... .....+.....+.+++++++++.+
T Consensus 210 ~~~~dVvIIGgG~AGl~aA~~la~~G~--~v~lie~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~v~~~ 287 (521)
T 1hyu_A 210 RDAYDVLIVGSGPAGAAAAVYSARKGI--RTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVIDS 287 (521)
T ss_dssp SCCEEEEEECCSHHHHHHHHHHHHTTC--CEEEECSSTTGGGTTCSCBCCBTTBSSBCHHHHHHHHHHHHHTSCEEEECS
T ss_pred cCcccEEEECCcHHHHHHHHHHHhCCC--eEEEEECCCCCcccccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEcC
Confidence 345789999999999999999999998 99999864210 000011110000 111122222234566789999999
Q ss_pred CeEEEeecCC-----CCeEEecCCcEEecCeEEEecCCCCCcCCCCCCCC-----cEEEecCHHHHHhhhcccCCCCeEE
Q psy2951 1140 KKIISDSELN-----EKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN-----KVFYLRTVEDANNIAPHITPESNVV 1209 (1466)
Q Consensus 1140 ~~v~~i~d~~-----~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~-----~v~~~~~~~~~~~l~~~~~~~~~vv 1209 (1466)
++|+.+ ++. .+.|.+++|.++.||+||+|||+.|+.+++| |.+ ++++....+ .....+++|+
T Consensus 288 ~~v~~i-~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~~~~ip-G~~~~~~~~v~~~~~~~------~~~~~~k~V~ 359 (521)
T 1hyu_A 288 QSASKL-VPAATEGGLHQIETASGAVLKARSIIIATGAKWRNMNVP-GEDQYRTKGVTYCPHCD------GPLFKGKRVA 359 (521)
T ss_dssp CCEEEE-ECCSSTTSCEEEEETTSCEEEEEEEEECCCEEECCCCCT-TTTTTTTTTEECCTTCC------GGGGBTSEEE
T ss_pred CEEEEE-EeccCCCceEEEEECCCCEEEcCEEEECCCCCcCCCCCC-ChhhhcCceEEEeecCc------hhhcCCCeEE
Confidence 889999 864 4568888898999999999999999988888 764 455543221 1223489999
Q ss_pred EEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHh-CCcEEEcCceEEEEEecCCCcEEEEEcCC
Q psy2951 1210 VIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFES-KGVKFVMKANVSSFEKNEKNDVTAANLDN 1288 (1466)
Q Consensus 1210 VvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~-~gv~~~~~~~v~~i~~~~~g~~~~v~l~~ 1288 (1466)
|||+|++|+|+|..|++.|.+|+++++.+.+.. . ..+.+.+++ .||++++++.++++. .+++++..+.+.+
T Consensus 360 ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~---~----~~l~~~l~~~~gV~v~~~~~v~~i~-~~~~~v~~v~~~~ 431 (521)
T 1hyu_A 360 VIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA---D----QVLQDKVRSLKNVDIILNAQTTEVK-GDGSKVVGLEYRD 431 (521)
T ss_dssp EECCSHHHHHHHHHHHHHBSEEEEECSSSSCCS---C----HHHHHHHTTCTTEEEECSEEEEEEE-ECSSSEEEEEEEE
T ss_pred EECCCHHHHHHHHHHHhhCCEEEEEEeCcccCc---C----HHHHHHHhcCCCcEEEeCCEEEEEE-cCCCcEEEEEEEe
Confidence 999999999999999999999999999886553 1 345566666 699999999999998 4555666676653
Q ss_pred ---CC--eeecCEEEEeeccccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHH
Q psy2951 1289 ---GT--TIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLA 1363 (1466)
Q Consensus 1289 ---g~--~i~~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A 1363 (1466)
|+ ++++|.|++++|..|+++|++. .+.++.+|+|.||++++|+.|+|||+|||+..|.. .+..|
T Consensus 432 ~~~g~~~~i~~D~vi~a~G~~pn~~~l~~-~l~~~~~G~I~Vd~~~~ts~p~VfA~GD~~~~~~~----------~~~~A 500 (521)
T 1hyu_A 432 RVSGDIHSVALAGIFVQIGLLPNTHWLEG-ALERNRMGEIIIDAKCETSVKGVFAAGDCTTVPYK----------QIIIA 500 (521)
T ss_dssp TTTCCEEEEECSEEEECCCEEESCGGGTT-TSCBCTTSCBCCCTTCBCSSTTEEECSTTBCCSSC----------CHHHH
T ss_pred CCCCceEEEEcCEEEECcCCCCCchHHhh-hhccCCCCcEEeCCCCCCCCCCEEEeecccCCCcc----------eeeeh
Confidence 54 6899999999999999999886 48888889999999999999999999999987642 23789
Q ss_pred HHHHHHHHHHhcC
Q psy2951 1364 QYHGRIAALNMVE 1376 (1466)
Q Consensus 1364 ~~qa~~aa~~i~g 1376 (1466)
..||+.||.++..
T Consensus 501 ~~~g~~aa~~i~~ 513 (521)
T 1hyu_A 501 TGEGAKASLSAFD 513 (521)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHH
Confidence 9999999999863
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.7e-29 Score=290.78 Aligned_cols=280 Identities=21% Similarity=0.272 Sum_probs=209.7
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCC---------CCCCchhhccCcccccccChhhhccCCc
Q psy2951 1064 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD---------RVKLSKQLDIKADSILLRTEEFYKDNDI 1134 (1466)
Q Consensus 1064 ~~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~---------~~~l~~~~~~~~~~~~~~~~~~~~~~~v 1134 (1466)
..+++|+|||||+||+++|..|++.|+ +|+|||+.. ++.. .+.+... .....+.....+++.+.++
T Consensus 12 ~~~~~vvIIG~G~aGl~aA~~l~~~g~--~v~lie~~~-~gg~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~v 86 (335)
T 2a87_A 12 HPVRDVIVIGSGPAGYTAALYAARAQL--APLVFEGTS-FGGALMTTTDVENYPGFRNG--ITGPELMDEMREQALRFGA 86 (335)
T ss_dssp CCCEEEEEECCHHHHHHHHHHHHHTTC--CCEEECCSS-CSCGGGSCSCBCCSTTCTTC--BCHHHHHHHHHHHHHHTTC
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCC--eEEEEecCC-CCCceeccchhhhcCCCCCC--CCHHHHHHHHHHHHHHcCC
Confidence 345789999999999999999999998 999999752 1110 0111000 0111222222345566799
Q ss_pred EEEcCCeEEEeecCC-CCeE-EecCCcEEecCeEEEecCCCCCcCCCCCCCC-----cEEEecCHHHHHhhhcccCCCCe
Q psy2951 1135 HVIKGKKIISDSELN-EKKI-KLQDGTSIDFTKIYLATGSSPRTISQADGVN-----KVFYLRTVEDANNIAPHITPESN 1207 (1466)
Q Consensus 1135 ~~~~~~~v~~i~d~~-~~~v-~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~-----~v~~~~~~~~~~~l~~~~~~~~~ 1207 (1466)
+++.++ |..+ +.. ..+| .++++.++.||+||+|||+.|+.+++| |.+ .++...+.++ .+..+++
T Consensus 87 ~~~~~~-v~~i-~~~~~~~v~~~~~g~~~~~d~lviAtG~~~~~~~i~-g~~~~~~~~~~~~~~~~~------~~~~~~~ 157 (335)
T 2a87_A 87 DLRMED-VESV-SLHGPLKSVVTADGQTHRARAVILAMGAAARYLQVP-GEQELLGRGVSSCATCDG------FFFRDQD 157 (335)
T ss_dssp EEECCC-EEEE-ECSSSSEEEEETTSCEEEEEEEEECCCEEECCCCCT-HHHHTBTTTEESCHHHHG------GGGTTCE
T ss_pred EEEEee-EEEE-EeCCcEEEEEeCCCCEEEeCEEEECCCCCccCCCCC-chHhccCCceEEeeccch------hhcCCCE
Confidence 999998 9999 862 2357 777888999999999999999988888 643 3443332222 2345899
Q ss_pred EEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcC
Q psy2951 1208 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLD 1287 (1466)
Q Consensus 1208 vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~ 1287 (1466)
|+|||+|.+|+|+|..|++.|.+|+++++.+.+.. ...+ ..+++++.||++++++++++++ .++ ++..|.+.
T Consensus 158 v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~~---~~~~---~~~~~~~~gV~v~~~~~v~~i~-~~~-~~~~v~~~ 229 (335)
T 2a87_A 158 IAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFRA---SKIM---LDRARNNDKIRFLTNHTVVAVD-GDT-TVTGLRVR 229 (335)
T ss_dssp EEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCSS---CTTH---HHHHHHCTTEEEECSEEEEEEE-CSS-SCCEEEEE
T ss_pred EEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCCc---cHHH---HHHHhccCCcEEEeCceeEEEe-cCC-cEeEEEEE
Confidence 99999999999999999999999999999875532 1111 1245578999999999999998 333 43345543
Q ss_pred ---CC--CeeecCEEEEeeccccCccccccCCceeeCCCeEEeCCC-ccccCCCEEEecccccCCCccCCCceeeeecHH
Q psy2951 1288 ---NG--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEY-LETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQ 1361 (1466)
Q Consensus 1288 ---~g--~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~-~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~ 1361 (1466)
+| +++++|.||+|+|..|++++++ .++.++.+|+|.||++ ++|+.|+|||+|||+..+.. .+.
T Consensus 230 ~~~~g~~~~i~~D~vi~a~G~~p~~~~~~-~~l~~~~~G~i~vd~~~~~t~~~~iya~GD~~~~~~~----------~~~ 298 (335)
T 2a87_A 230 DTNTGAETTLPVTGVFVAIGHEPRSGLVR-EAIDVDPDGYVLVQGRTTSTSLPGVFAAGDLVDRTYR----------QAV 298 (335)
T ss_dssp EETTSCCEEECCSCEEECSCEEECCTTTB-TTBCBCTTSCBCCSTTSSBCSSTTEEECGGGTCCSCC----------CHH
T ss_pred EcCCCceEEeecCEEEEccCCccChhHhh-cccccCCCccEEeCCCCCccCCCCEEEeeecCCccHH----------HHH
Confidence 45 5789999999999999999887 5788888899999985 68999999999999986422 247
Q ss_pred HHHHHHHHHHHHhcC
Q psy2951 1362 LAQYHGRIAALNMVE 1376 (1466)
Q Consensus 1362 ~A~~qa~~aa~~i~g 1376 (1466)
.|..||+.||.+|..
T Consensus 299 ~A~~~g~~aA~~i~~ 313 (335)
T 2a87_A 299 TAAGSGCAAAIDAER 313 (335)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHH
Confidence 899999999999874
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=293.20 Aligned_cols=292 Identities=13% Similarity=0.151 Sum_probs=211.2
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCC------CCCCCC----CCC-chhhcc------------------
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN------FLPYDR----VKL-SKQLDI------------------ 1116 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~------~~~~~~----~~l-~~~~~~------------------ 1116 (1466)
+++|+|||||+||+++|..|++.|.. +|+|||+++ ..|... +.+ ...+..
T Consensus 4 ~~~vvIIGaG~aGl~aA~~l~~~g~~-~v~lie~~~~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 82 (369)
T 3d1c_A 4 HHKVAIIGAGAAGIGMAITLKDFGIT-DVIILEKGTVGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFNE 82 (369)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCC-CEEEECSSSTTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHHCC
T ss_pred cCcEEEECcCHHHHHHHHHHHHcCCC-cEEEEecCCCCCccccCcccccccCcchhcccCCchhhhhccccccccccccc
Confidence 35899999999999999999999864 799999986 111110 000 000000
Q ss_pred ---CcccccccChhhhccCCcEEEcCCeEEEeecCC--CCeEEecCCcEEecCeEEEecCCCCCcCCCCCCCCcEEEecC
Q psy2951 1117 ---KADSILLRTEEFYKDNDIHVIKGKKIISDSELN--EKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLRT 1191 (1466)
Q Consensus 1117 ---~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~d~~--~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~~v~~~~~ 1191 (1466)
....+......++++.+++++.+++|+++ +.. ...|.+.++ ++.||+||+|||+.++ |.+| + ..+++...
T Consensus 83 ~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i-~~~~~~~~v~~~~g-~~~~d~vVlAtG~~~~-p~ip-~-~~~~~~~~ 157 (369)
T 3d1c_A 83 EHISGETYAEYLQVVANHYELNIFENTVVTNI-SADDAYYTIATTTE-TYHADYIFVATGDYNF-PKKP-F-KYGIHYSE 157 (369)
T ss_dssp SSCBHHHHHHHHHHHHHHTTCEEECSCCEEEE-EECSSSEEEEESSC-CEEEEEEEECCCSTTS-BCCC-S-SSCEEGGG
T ss_pred cCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEE-EECCCeEEEEeCCC-EEEeCEEEECCCCCCc-cCCC-C-Cceechhh
Confidence 00000011123445679999999999999 865 346777666 6999999999999765 4566 5 33333322
Q ss_pred HHHHHhhhcccCCCCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcc------cccHHHHHHHHHHHHhCC-cEE
Q psy2951 1192 VEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQE------SLGKEVGERITKLFESKG-VKF 1264 (1466)
Q Consensus 1192 ~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~------~~~~~~~~~l~~~~~~~g-v~~ 1264 (1466)
+.+... .++++|+|||+|.+|+|+|..|++.|.+|+++++.+.++.+ .+++.+.+.+.+.+++.| |++
T Consensus 158 ~~~~~~-----~~~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~~d~~~~~~~~~~~~l~~~l~~~g~v~~ 232 (369)
T 3d1c_A 158 IEDFDN-----FNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGARIEM 232 (369)
T ss_dssp CSCGGG-----SCSSEEEEECCSHHHHHHHHHHHHTTCEEEEECC----------CTTSCCHHHHHHHHHHHHTTCCEEE
T ss_pred cCChhh-----cCCCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCccCCHHHHHHHHHHHhhCCcEEE
Confidence 222111 14789999999999999999999999999999998866532 256777888999999997 999
Q ss_pred EcCceEEEEEecCCCcEEEEEcCCCCeee-cCEEEEeeccccCccccccCCceeeCCCeEEeCCC-ccccCCCEEEeccc
Q psy2951 1265 VMKANVSSFEKNEKNDVTAANLDNGTTIP-ADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEY-LETNVPGVYAGGDI 1342 (1466)
Q Consensus 1265 ~~~~~v~~i~~~~~g~~~~v~l~~g~~i~-~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~-~~t~~~~v~a~GD~ 1342 (1466)
+++.+|.+++ .++ ....|.+.||+++. +|.||+++|+.|+++++..+++. +.+|++.||++ ++|++|+|||+|||
T Consensus 233 ~~~~~v~~i~-~~~-~~~~v~~~~g~~~~~~d~vi~a~G~~~~~~~~~~~~~~-~~~g~i~v~~~~~~t~~~~v~a~GD~ 309 (369)
T 3d1c_A 233 NVHYTVKDID-FNN-GQYHISFDSGQSVHTPHEPILATGFDATKNPIVQQLFV-TTNQDIKLTTHDESTRYPNIFMIGAT 309 (369)
T ss_dssp ECSCCEEEEE-EET-TEEEEEESSSCCEEESSCCEECCCBCGGGSHHHHHHSC-CTTSCCCBCTTSBBSSSTTEEECSTT
T ss_pred ecCcEEEEEE-ecC-CceEEEecCCeEeccCCceEEeeccCCccchhhhhhcc-CCCCCEEechhhcccCCCCeEEeccc
Confidence 9999999996 222 33467889998775 69999999999999877766666 67788999965 77889999999999
Q ss_pred ccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCCC
Q psy2951 1343 AYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK 1378 (1466)
Q Consensus 1343 a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~ 1378 (1466)
+..+.... ..+..+.+||+++|++|.|..
T Consensus 310 ~~~~~~~~-------~~~~~~~~~a~~~a~~l~~~~ 338 (369)
T 3d1c_A 310 VENDNAKL-------CYIYKFRARFAVLAHLLTQRE 338 (369)
T ss_dssp CCCSSCCC-------CSHHHHGGGHHHHHHHHHHHT
T ss_pred cccCCeeE-------EEEehhhHHHHHHHHHHhccc
Confidence 98876531 234578899999999999854
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-29 Score=301.18 Aligned_cols=278 Identities=22% Similarity=0.260 Sum_probs=206.3
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCC----CCCCCchhhccCcccccccChhhhccCCcEEEcC
Q psy2951 1064 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY----DRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKG 1139 (1466)
Q Consensus 1064 ~~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 1139 (1466)
...++|+|||||+||+++|..|++.|+ +|+|||+++.++. ..|.. .....+..+..+++++.+++++.+
T Consensus 120 ~~~~~V~IIGgGpAGl~aA~~L~~~G~--~V~v~e~~~~~GG~l~~gip~~-----~~~~~~~~~~~~~l~~~gv~~~~~ 192 (456)
T 2vdc_G 120 ELGLSVGVIGAGPAGLAAAEELRAKGY--EVHVYDRYDRMGGLLVYGIPGF-----KLEKSVVERRVKLLADAGVIYHPN 192 (456)
T ss_dssp SCCCCEEEECCSHHHHHHHHHHHHHTC--CEEEECSSSSCSTHHHHTSCTT-----TSCHHHHHHHHHHHHHTTCEEETT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC--eEEEEeccCCCCCeeeecCCCc-----cCCHHHHHHHHHHHHHCCcEEEeC
Confidence 456789999999999999999999998 8999999876532 11110 011122223345677889999999
Q ss_pred CeEEEeecCCCCeEEecCCcEEecCeEEEecCCC-CCcCCCCCCCC--cEEEecCHHHHHh---hhc---------ccCC
Q psy2951 1140 KKIISDSELNEKKIKLQDGTSIDFTKIYLATGSS-PRTISQADGVN--KVFYLRTVEDANN---IAP---------HITP 1204 (1466)
Q Consensus 1140 ~~v~~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~-~~~~~~~~g~~--~v~~~~~~~~~~~---l~~---------~~~~ 1204 (1466)
+.| . +.+.++++ .+.||+||||||+. |+.+++| |.+ +++...++-.... +.. ....
T Consensus 193 ~~v----~---~~v~~~~~-~~~~d~vvlAtG~~~~~~~~ip-G~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~ 263 (456)
T 2vdc_G 193 FEV----G---RDASLPEL-RRKHVAVLVATGVYKARDIKAP-GSGLGNIVAALDYLTTSNKVSLGDTVEAYENGSLNAA 263 (456)
T ss_dssp CCB----T---TTBCHHHH-HSSCSEEEECCCCCEECCTTCS-CCTTTTEEEHHHHHHHHHHHHCTTTCSSCCTTCSCCC
T ss_pred CEe----c---cEEEhhHh-HhhCCEEEEecCCCCCCCCCCC-CCcCCCcEEHHHHHHHhhhhhcccccccccccccccC
Confidence 843 1 22444443 36799999999995 7888888 876 7776432222111 111 1145
Q ss_pred CCeEEEEcCCHHHHHHHHHHhcCCC-eEEEEcCCCcC-CcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEE
Q psy2951 1205 ESNVVVIGSSFIGMEAAAFCASKVK-SVTVVGRGAVP-FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVT 1282 (1466)
Q Consensus 1205 ~~~vvVvG~g~~g~e~a~~l~~~g~-~v~vv~~~~~~-~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~ 1282 (1466)
+++|+|||+|++|+|+|..+.+.|. +|++++|.+.. ++ ....+ .+.+++.||+++++..++++. . ++++.
T Consensus 264 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~~~p-~~~~e-----~~~~~~~Gv~~~~~~~~~~i~-~-~g~v~ 335 (456)
T 2vdc_G 264 GKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRKNMP-GSQRE-----VAHAEEEGVEFIWQAAPEGFT-G-DTVVT 335 (456)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCSTTCS-SCHHH-----HHHHHHTTCEEECCSSSCCEE-E-EEEEE
T ss_pred CCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCccCCC-CCHHH-----HHHHHHCCCEEEeCCCceEEe-C-CCcEE
Confidence 8999999999999999999999987 59999998754 43 22222 245778899999999998887 3 34432
Q ss_pred EEEc---------C---------CC--CeeecCEEEEeeccccCcc--ccccCCceeeCCCeEEeCCC-ccccCCCEEEe
Q psy2951 1283 AANL---------D---------NG--TTIPADLVIVGIGTVLNTN--YLDGKGVELNGQKAVVVNEY-LETNVPGVYAG 1339 (1466)
Q Consensus 1283 ~v~l---------~---------~g--~~i~~D~vv~a~G~~p~~~--~~~~~gl~~~~~G~i~vd~~-~~t~~~~v~a~ 1339 (1466)
.|++ . +| .++++|.||+|+|..|++. +++..|+.++.+|+|.||++ ++|+.|+|||+
T Consensus 336 ~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~aD~Vi~A~G~~p~~~~~~l~~~gl~~~~~G~i~vd~~~~~Ts~~~VfA~ 415 (456)
T 2vdc_G 336 GVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVIKALGFEPEDLPNAFDEPELKVTRWGTLLVDHRTKMTNMDGVFAA 415 (456)
T ss_dssp TTEEEEEEEEEEEECTTCCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHSTTSCBCTTSSBCCCTTTCBCSSTTEEEC
T ss_pred EEEEEEEEecccCCcCCccccccCCcEEEEECCEEEECCCCCCCcchhhcccCCeeECCCCCEEECCCCCcCCCCCEEEe
Confidence 2222 1 23 4789999999999999876 78889999998999999987 99999999999
Q ss_pred cccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcC
Q psy2951 1340 GDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVE 1376 (1466)
Q Consensus 1340 GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g 1376 (1466)
|||+..|.. +..|+.||+.||.+|.+
T Consensus 416 GD~~~g~~~-----------v~~A~~~G~~aA~~i~~ 441 (456)
T 2vdc_G 416 GDIVRGASL-----------VVWAIRDGRDAAEGIHA 441 (456)
T ss_dssp GGGGSSCCS-----------HHHHHHHHHHHHHHHHH
T ss_pred ccccCCchH-----------HHHHHHHHHHHHHHHHH
Confidence 999987654 37899999999999985
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-28 Score=290.14 Aligned_cols=283 Identities=17% Similarity=0.160 Sum_probs=201.6
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCC--------CCchhh---c---c--------Ccccccc
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV--------KLSKQL---D---I--------KADSILL 1123 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~--------~l~~~~---~---~--------~~~~~~~ 1123 (1466)
+++|+|||||++|+++|..|++.|+ +|+|||+++.++.... ...... . . ....+..
T Consensus 3 ~~~vvIIG~G~aGl~~A~~l~~~g~--~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (357)
T 4a9w_A 3 SVDVVVIGGGQSGLSAGYFLRRSGL--SYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLA 80 (357)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHSSC--CEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHH
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCC--CEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHH
Confidence 3689999999999999999999998 9999999875431100 000000 0 0 0011111
Q ss_pred cChhhhccCCcEEEcCCeEEEeecCCCCe---EEecCCcEEecCeEEEecCC--CCCcCCCCCCCC---c-EEEecCHHH
Q psy2951 1124 RTEEFYKDNDIHVIKGKKIISDSELNEKK---IKLQDGTSIDFTKIYLATGS--SPRTISQADGVN---K-VFYLRTVED 1194 (1466)
Q Consensus 1124 ~~~~~~~~~~v~~~~~~~v~~i~d~~~~~---v~~~~g~~~~yd~lvlAtG~--~~~~~~~~~g~~---~-v~~~~~~~~ 1194 (1466)
...++.++.+++++.+++|+++ +...+. |.++++ ++.||+||+|||. .|+.|+++ |.+ + ......+.+
T Consensus 81 ~l~~~~~~~~~~~~~~~~v~~i-~~~~~~~~~v~~~~g-~~~~d~vV~AtG~~~~~~~~~~~-g~~~~~~~~~~~~~~~~ 157 (357)
T 4a9w_A 81 YLAQYEQKYALPVLRPIRVQRV-SHFGERLRVVARDGR-QWLARAVISATGTWGEAYTPEYQ-GLESFAGIQLHSAHYST 157 (357)
T ss_dssp HHHHHHHHTTCCEECSCCEEEE-EEETTEEEEEETTSC-EEEEEEEEECCCSGGGBCCCCCT-TGGGCCSEEEEGGGCCC
T ss_pred HHHHHHHHcCCEEEcCCEEEEE-EECCCcEEEEEeCCC-EEEeCEEEECCCCCCCCCCCCCC-CccccCCcEEEeccCCC
Confidence 2224556679999999999999 877665 667777 8999999999995 77778888 765 2 222222222
Q ss_pred HHhhhcccCCCCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCC-cCCcccc-cHHHHHHHHHHHH--------------
Q psy2951 1195 ANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGA-VPFQESL-GKEVGERITKLFE-------------- 1258 (1466)
Q Consensus 1195 ~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~-~~~~~~~-~~~~~~~l~~~~~-------------- 1258 (1466)
... ..+++|+|||+|.+|+|+|..|++.+ +|+++.+.+ ..++..+ +..+.+.+.+.++
T Consensus 158 ~~~-----~~~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (357)
T 4a9w_A 158 PAP-----FAGMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHEPAFLADDVDGRVLFERATERWKAQQEGREPDLPPGG 231 (357)
T ss_dssp SGG-----GTTSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSCCCBCCTTCCTHHHHTC--------------------
T ss_pred hhh-----cCCCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCCCeecchhhcCccHHHHHHHHHhccccccCCCccccc
Confidence 211 24799999999999999999999998 699999873 4333222 2333333322222
Q ss_pred --------------hCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccCccccccCCceeeCCCeEE
Q psy2951 1259 --------------SKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVV 1324 (1466)
Q Consensus 1259 --------------~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~ 1324 (1466)
+.|+ +.....+++++ . + .+.+.||+++++|+||+++|..|++++++.+|+. +++|+|.
T Consensus 232 ~~~~~~~~~~~~~~~~g~-i~~~~~v~~~~-~-~----~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~-~~~G~i~ 303 (357)
T 4a9w_A 232 FGDIVMVPPVLDARARGV-LAAVPPPARFS-P-T----GMQWADGTERAFDAVIWCTGFRPALSHLKGLDLV-TPQGQVE 303 (357)
T ss_dssp --CBCCCHHHHHHHHTTC-CCEECCCSEEE-T-T----EEECTTSCEEECSEEEECCCBCCCCGGGTTTTCB-CTTSCBC
T ss_pred ccCcccChhHHHHHhcCc-eEEecCcceEe-C-C----eeEECCCCEecCCEEEECCCcCCCCcccCccccc-CCCCCcc
Confidence 4454 55566677776 2 2 3889999999999999999999999999999998 7789999
Q ss_pred eCCC--ccccCCCEEEec--ccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCC
Q psy2951 1325 VNEY--LETNVPGVYAGG--DIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEK 1377 (1466)
Q Consensus 1325 vd~~--~~t~~~~v~a~G--D~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~ 1377 (1466)
||++ ++|+.|+|||+| ||+..+... ...|..||+.||++|+..
T Consensus 304 vd~~~l~~t~~~~vya~Gd~d~~~~~~~~----------~~~A~~~g~~~a~~i~~~ 350 (357)
T 4a9w_A 304 VDGSGLRALAVPSVWLLGYGDWNGMASAT----------LIGVTRYAREAVRQVTAY 350 (357)
T ss_dssp BCTTSCBBSSCTTEEECSSCGGGSTTCSS----------TTTHHHHHHHHHHHHHHH
T ss_pred ccCCcccCCCCCCeEEeccccccccchhh----------hhhhHHHHHHHHHHHHHH
Confidence 9999 899999999999 666532211 156999999999999853
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.2e-28 Score=287.35 Aligned_cols=283 Identities=18% Similarity=0.169 Sum_probs=202.1
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCc------c--ch----hcc----------cCcccccc
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK------L--SK----QLD----------IKADSILL 652 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~------~--~~----~~~----------~~~~~~~~ 652 (1466)
+++|+|||||+||+++|+.|+++|++ |+++|+++.++..... + .. ... ....++..
T Consensus 3 ~~~vvIIG~G~aGl~~A~~l~~~g~~--v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (357)
T 4a9w_A 3 SVDVVVIGGGQSGLSAGYFLRRSGLS--YVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLA 80 (357)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHSSCC--EEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHH
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCC--EEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHH
Confidence 47999999999999999999999987 8888887654321100 0 00 000 11134455
Q ss_pred cCHhHhhhCCcEEEEceEEEEeccccccE---EEccCCCEEecCEEEEcCC--CCCCcCCCCCCCCc----EEEecCHHH
Q psy2951 653 RTEEFYKDNDIHVIKGKKIISDSELNEKK---IKLQDGTSIDFTKIYLATG--SSPRTISQADGVNK----VFYLRTVED 723 (1466)
Q Consensus 653 ~~~~~~~~~gv~~~~~~~v~~i~~~~~~~---v~~~~~~~~~~d~lviAtG--~~~~~~~~~~g~~~----~~~~~~~~~ 723 (1466)
++.+.+++.+++++++++|+.+ +..... +.+.++ ++.||+||+||| +.|+.|+++ |.+. .+.....
T Consensus 81 ~l~~~~~~~~~~~~~~~~v~~i-~~~~~~~~~v~~~~g-~~~~d~vV~AtG~~~~~~~~~~~-g~~~~~~~~~~~~~~-- 155 (357)
T 4a9w_A 81 YLAQYEQKYALPVLRPIRVQRV-SHFGERLRVVARDGR-QWLARAVISATGTWGEAYTPEYQ-GLESFAGIQLHSAHY-- 155 (357)
T ss_dssp HHHHHHHHTTCCEECSCCEEEE-EEETTEEEEEETTSC-EEEEEEEEECCCSGGGBCCCCCT-TGGGCCSEEEEGGGC--
T ss_pred HHHHHHHHcCCEEEcCCEEEEE-EECCCcEEEEEeCCC-EEEeCEEEECCCCCCCCCCCCCC-CccccCCcEEEeccC--
Confidence 5566777889999999889988 554443 667666 899999999999 577788888 7651 2221111
Q ss_pred HHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecC-ccCcccc-CHHHHHHHHHHHH--------------
Q psy2951 724 ANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGA-VPFQESL-GKEVGERITKLFE-------------- 787 (1466)
Q Consensus 724 ~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~-~~~~~~~-~~~~~~~~~~~l~-------------- 787 (1466)
.......+++|+|||+|++|+|+|..|++.+ +|+++.+.+ ..+.... +..+.+.+.+.+.
T Consensus 156 ---~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (357)
T 4a9w_A 156 ---STPAPFAGMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHEPAFLADDVDGRVLFERATERWKAQQEGREPDLPPGG 231 (357)
T ss_dssp ---CCSGGGTTSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSCCCBCCTTCCTHHHHTC--------------------
T ss_pred ---CChhhcCCCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCCCeecchhhcCccHHHHHHHHHhccccccCCCccccc
Confidence 1111225899999999999999999999998 699999884 3332221 2333333333222
Q ss_pred --------------hcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCccccccCCceeeCCCcEE
Q psy2951 788 --------------SKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVV 853 (1466)
Q Consensus 788 --------------~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~ 853 (1466)
+.|+ +.....+.+++.. .+.+++|+++++|.||+|+|++|++++++..++. +++|+|.
T Consensus 232 ~~~~~~~~~~~~~~~~g~-i~~~~~v~~~~~~------~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~-~~~G~i~ 303 (357)
T 4a9w_A 232 FGDIVMVPPVLDARARGV-LAAVPPPARFSPT------GMQWADGTERAFDAVIWCTGFRPALSHLKGLDLV-TPQGQVE 303 (357)
T ss_dssp --CBCCCHHHHHHHHTTC-CCEECCCSEEETT------EEECTTSCEEECSEEEECCCBCCCCGGGTTTTCB-CTTSCBC
T ss_pred ccCcccChhHHHHHhcCc-eEEecCcceEeCC------eeEECCCCEecCCEEEECCCcCCCCcccCccccc-CCCCCcc
Confidence 3444 4555666676621 5789999999999999999999999999999998 8889999
Q ss_pred eCCC--CCCCCCCeEEec--cccccCCcccCCceeeeccHHHHHHHHHHHHHHhccC
Q psy2951 854 VNEY--LETNVPGVYAGG--DIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEK 906 (1466)
Q Consensus 854 vd~~--~~t~~~~iya~G--D~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~ 906 (1466)
+|++ ++|+.|+|||+| ||+..... .+..|..||+.+|.+|...
T Consensus 304 vd~~~l~~t~~~~vya~Gd~d~~~~~~~----------~~~~A~~~g~~~a~~i~~~ 350 (357)
T 4a9w_A 304 VDGSGLRALAVPSVWLLGYGDWNGMASA----------TLIGVTRYAREAVRQVTAY 350 (357)
T ss_dssp BCTTSCBBSSCTTEEECSSCGGGSTTCS----------STTTHHHHHHHHHHHHHHH
T ss_pred ccCCcccCCCCCCeEEeccccccccchh----------hhhhhHHHHHHHHHHHHHH
Confidence 9999 899999999999 56552211 2346999999999999754
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.3e-28 Score=288.41 Aligned_cols=291 Identities=13% Similarity=0.139 Sum_probs=209.1
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCC-------CC----Cc-cchhcc------------------
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY-------DR----VK-LSKQLD------------------ 644 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~-------~~----~~-~~~~~~------------------ 644 (1466)
.++|+|||||+||+++|+.|++.|++ +|+++|+++ ++. .. +. ....++
T Consensus 4 ~~~vvIIGaG~aGl~aA~~l~~~g~~-~v~lie~~~-~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 81 (369)
T 3d1c_A 4 HHKVAIIGAGAAGIGMAITLKDFGIT-DVIILEKGT-VGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFN 81 (369)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCC-CEEEECSSS-TTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHHC
T ss_pred cCcEEEECcCHHHHHHHHHHHHcCCC-cEEEEecCC-CCCccccCcccccccCcchhcccCCchhhhhcccccccccccc
Confidence 47999999999999999999999982 389999875 211 00 00 000000
Q ss_pred ---cCcccccccCHhHhhhCCcEEEEceEEEEecccc--ccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCCcEEEec
Q psy2951 645 ---IKADSILLRTEEFYKDNDIHVIKGKKIISDSELN--EKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLR 719 (1466)
Q Consensus 645 ---~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~--~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~~~~~~~ 719 (1466)
.....+..++...+++.+++++.+++|..+ +.. ...|.+.++ ++.||+||+|||+.+. |.+| + ...++..
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i-~~~~~~~~v~~~~g-~~~~d~vVlAtG~~~~-p~ip-~-~~~~~~~ 156 (369)
T 3d1c_A 82 EEHISGETYAEYLQVVANHYELNIFENTVVTNI-SADDAYYTIATTTE-TYHADYIFVATGDYNF-PKKP-F-KYGIHYS 156 (369)
T ss_dssp CSSCBHHHHHHHHHHHHHHTTCEEECSCCEEEE-EECSSSEEEEESSC-CEEEEEEEECCCSTTS-BCCC-S-SSCEEGG
T ss_pred ccCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEE-EECCCeEEEEeCCC-EEEeCEEEECCCCCCc-cCCC-C-Cceechh
Confidence 011122233445567789999999889888 543 456766655 6999999999998765 5566 4 3233332
Q ss_pred CHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCcc------ccCHHHHHHHHHHHHhcC-cE
Q psy2951 720 TVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQE------SLGKEVGERITKLFESKG-VK 792 (1466)
Q Consensus 720 ~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~------~~~~~~~~~~~~~l~~~g-v~ 792 (1466)
...+ .. ..++++|+|||+|.+|+|+|..|++.|.+|+++++.+.++.+ .+++...+.+.+.+++.| |+
T Consensus 157 ~~~~---~~--~~~~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~~d~~~~~~~~~~~~l~~~l~~~g~v~ 231 (369)
T 3d1c_A 157 EIED---FD--NFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGARIE 231 (369)
T ss_dssp GCSC---GG--GSCSSEEEEECCSHHHHHHHHHHHHTTCEEEEECC----------CTTSCCHHHHHHHHHHHHTTCCEE
T ss_pred hcCC---hh--hcCCCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCccCCHHHHHHHHHHHhhCCcEE
Confidence 2211 11 124789999999999999999999999999999998865532 245677788889999997 99
Q ss_pred EEccceEEEEEecCCCceEEEECCCCcEEe-cCEEEEccccccCccccccCCceeeCCCcEEeCCC-CCCCCCCeEEecc
Q psy2951 793 FVMKANVSSFEKNEKNDVTAANLDNGTTIP-ADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEY-LETNVPGVYAGGD 870 (1466)
Q Consensus 793 ~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~-~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~-~~t~~~~iya~GD 870 (1466)
++++.++.+++..+ + ...+.+.+|+++. +|.||+|+|++|+++++...+++ +++|++.+|++ ++|+.|+|||+||
T Consensus 232 ~~~~~~v~~i~~~~-~-~~~v~~~~g~~~~~~d~vi~a~G~~~~~~~~~~~~~~-~~~g~i~v~~~~~~t~~~~v~a~GD 308 (369)
T 3d1c_A 232 MNVHYTVKDIDFNN-G-QYHISFDSGQSVHTPHEPILATGFDATKNPIVQQLFV-TTNQDIKLTTHDESTRYPNIFMIGA 308 (369)
T ss_dssp EECSCCEEEEEEET-T-EEEEEESSSCCEEESSCCEECCCBCGGGSHHHHHHSC-CTTSCCCBCTTSBBSSSTTEEECST
T ss_pred EecCcEEEEEEecC-C-ceEEEecCCeEeccCCceEEeeccCCccchhhhhhcc-CCCCCEEechhhcccCCCCeEEecc
Confidence 99999999996322 2 2357778888775 69999999999998776655566 77899999975 6789999999999
Q ss_pred ccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCC
Q psy2951 871 IAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK 907 (1466)
Q Consensus 871 ~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~ 907 (1466)
|+..+...+ ..+..+..||+.+|++|.+..
T Consensus 309 ~~~~~~~~~-------~~~~~~~~~a~~~a~~l~~~~ 338 (369)
T 3d1c_A 309 TVENDNAKL-------CYIYKFRARFAVLAHLLTQRE 338 (369)
T ss_dssp TCCCSSCCC-------CSHHHHGGGHHHHHHHHHHHT
T ss_pred ccccCCeeE-------EEEehhhHHHHHHHHHHhccc
Confidence 998765431 233567889999999998753
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.4e-29 Score=320.71 Aligned_cols=330 Identities=16% Similarity=0.137 Sum_probs=233.6
Q ss_pred CCCeeecC-CCCCCCCeEEEEEEcCeEEEEEcccchhcccc--ccccccccCCCCCCeEEEEcCchHHHHHHHHHHHcCC
Q psy2951 543 ATGDIEDF-PGMDSLPCYKVTIQNDDSVVVQARKDELKNKK--RKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGF 619 (1466)
Q Consensus 543 ~~G~~~~~-p~~~~l~~~~v~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~vvVIGgG~AGl~aA~~l~~~g~ 619 (1466)
..|+..+. +|+.|+.|+.. ...+..+.|.+||. .+++. .+.+....+...+++|+|||||||||+||+.|+++|+
T Consensus 338 ~~g~~~~i~~c~~c~~C~~~-~~~~~~~~C~vnp~-~g~e~~~~~~~~~~~~~~~~~~VvIIGgG~AGl~aA~~La~~G~ 415 (690)
T 3k30_A 338 RDGRLNLIRECIGCNICVSG-DLTMSPIRCTQNPS-MGEEWRRGWHPERIRAKESDARVLVVGAGPSGLEAARALGVRGY 415 (690)
T ss_dssp HTTCGGGCCCCCCCCHHHHH-HHTTSCCCCSSCTT-TTTTTTTCCCSSCCCCCSSCCEEEEECCSHHHHHHHHHHHHHTC
T ss_pred HcCCccccccccchhhhhhc-ccCCCcccCCcCcc-cCcccccccCccccCcccccceEEEECCCHHHHHHHHHHHHCCC
Confidence 34655444 78888776543 23455667888887 44432 1222233445667999999999999999999999998
Q ss_pred CccEEEEcCCCCCCCCCCccchhcc-cCcccccccCHhHhhhC-CcEEEEceEEEEeccccccEEEccCCCEEecCEEEE
Q psy2951 620 TGKLYFITDENFLPYDRVKLSKQLD-IKADSILLRTEEFYKDN-DIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYL 697 (1466)
Q Consensus 620 ~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~d~lvi 697 (1466)
+ |+++|+++.+++.......... ....++..+....+.+. ++++++++.++. .++.++.||+|||
T Consensus 416 ~--V~liE~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~-----------~~~~~~~~d~lvl 482 (690)
T 3k30_A 416 D--VVLAEAGRDLGGRVTQESALPGLSAWGRVKEYREAVLAELPNVEIYRESPMTG-----------DDIVEFGFEHVIT 482 (690)
T ss_dssp E--EEEECSSSSSCTHHHHHHTSTTCGGGGHHHHHHHHHHHTCTTEEEESSCCCCH-----------HHHHHTTCCEEEE
T ss_pred e--EEEEecCCCCCCEeeeccCCCchhHHHHHHHHHHHHHHHcCCCEEEECCeecH-----------HHHhhcCCCEEEE
Confidence 7 8999998765543211111111 23345556666777777 999998874321 2334678999999
Q ss_pred cCCCC--------CCcCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEEC--CChHHHHHHHHHhccCCeEEEEeecC
Q psy2951 698 ATGSS--------PRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIG--SSFIGMEAAAFCASKVKSVTVVGRGA 767 (1466)
Q Consensus 698 AtG~~--------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG--~G~~g~e~A~~l~~~g~~V~lv~~~~ 767 (1466)
|||+. |..|+++ |.+... ..+..+... .....+++|+||| +|.+|+|+|..|++.|.+|+++++.+
T Consensus 483 AtG~~~~~~~~~~~~~~~i~-G~~~~~-v~~~~~~l~--~~~~~g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~ 558 (690)
T 3k30_A 483 ATGATWRTDGVARFHTTALP-IAEGMQ-VLGPDDLFA--GRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGA 558 (690)
T ss_dssp CCCEEECSSCCSSSCSSCCC-BCTTSE-EECHHHHHT--TCCCSSSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSS
T ss_pred cCCCccccccccccCCCCCC-CCCCCc-EEcHHHHhC--CCCCCCCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEeccc
Confidence 99998 4577788 776221 124444332 3445688999999 99999999999999999999999998
Q ss_pred ccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCccccccCCceee
Q psy2951 768 VPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELN 847 (1466)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~ 847 (1466)
.++....+......+.+.++++||++++++++++++. ++..+..+...+++++++|.||+|+|++|++.+++.++..
T Consensus 559 ~l~~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~~~~v~~~~~~~~~~i~aD~VV~A~G~~p~~~l~~~l~~~-- 635 (690)
T 3k30_A 559 QVSSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVGA-GGVTVRDTYASIERELECDAVVMVTARLPREELYLDLVAR-- 635 (690)
T ss_dssp STTGGGGGGTCHHHHHHHHHHTTCEEEESEEEEEEET-TEEEEEETTTCCEEEEECSEEEEESCEEECCHHHHHHHHH--
T ss_pred ccccccccchhHHHHHHHHHHCCCEEEcCcEEEEEEC-CeEEEEEccCCeEEEEECCEEEECCCCCCChHHHHHHhhh--
Confidence 7664444455677888999999999999999999983 2211111113456689999999999999998877653221
Q ss_pred CCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCCcCcccCe
Q psy2951 848 GQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSLSTIPF 915 (1466)
Q Consensus 848 ~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~~~~~~~~ 915 (1466)
+. +|+.|+|||+|||+..+. +..|+.||+.||.+|.+.....+..||
T Consensus 636 --~~-------~t~~~~VyaiGD~~~~~~------------~~~A~~~g~~aa~~i~~~l~g~~~~p~ 682 (690)
T 3k30_A 636 --RD-------AGEIASVRGIGDAWAPGT------------IAAAVWSGRRAAEEFDAVLPSNDEVPF 682 (690)
T ss_dssp --HH-------HTSCSEEEECGGGTSCBC------------HHHHHHHHHHHHHHTTCCCCCTTSCSS
T ss_pred --hc-------ccCCCCEEEEeCCCchhh------------HHHHHHHHHHHHHHHHhhccCCCCCCc
Confidence 11 788999999999997543 347999999999999887554444443
|
| >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.5e-28 Score=293.57 Aligned_cols=288 Identities=15% Similarity=0.228 Sum_probs=206.4
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcc-cCcccccccCHhHhhhCCcEEEEceEEE
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD-IKADSILLRTEEFYKDNDIHVIKGKKII 672 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~~~~~~~v~ 672 (1466)
..++|+||||||||+++|..|+++|....|+++++++.+ |.......... ....++...+.+++++.+++++.++.+.
T Consensus 5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~-gg~~~~g~~p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~ 83 (460)
T 1cjc_A 5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVP-FGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVG 83 (460)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSS-CTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBT
T ss_pred CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcC-CceeecccCCCCccHHHHHHHHHHHHHhCCcEEEeeeEEe
Confidence 358999999999999999999999955669999998765 32211110000 1223455556677788899999987441
Q ss_pred EeccccccEEEccCCCEEecCEEEEcCCCCC-CcCCCCCCCC--cEEEecCHHHHHh-------hcccCCCCCcEEEECC
Q psy2951 673 SDSELNEKKIKLQDGTSIDFTKIYLATGSSP-RTISQADGVN--KVFYLRTVEDANN-------IAPHITPESNVVVIGS 742 (1466)
Q Consensus 673 ~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~-~~~~~~~g~~--~~~~~~~~~~~~~-------~~~~~~~~~~vvVvG~ 742 (1466)
+.+++.+ ..+.||+||||||+.+ +.|++| |.+ ++++..++....+ +...+ .+++|+|||+
T Consensus 84 -------~~V~~~~-~~~~~d~lVlAtGs~~~~~~~ip-G~~~~gv~~~~~~~~~~~~~~d~~~~~~~~-~~~~vvVIGg 153 (460)
T 1cjc_A 84 -------RDVTVQE-LQDAYHAVVLSYGAEDHQALDIP-GEELPGVFSARAFVGWYNGLPENRELAPDL-SCDTAVILGQ 153 (460)
T ss_dssp -------TTBCHHH-HHHHSSEEEECCCCCEECCCCCT-TTTSTTEEEHHHHHHHHTTCGGGTTCCCCT-TSSEEEEESC
T ss_pred -------eEEEecc-ceEEcCEEEEecCcCCCCCCCCC-CCCCCcEEEHHHHHHHhhcCccccccccCC-CCCEEEEECC
Confidence 1233333 3478999999999995 778898 876 6776554432211 11112 5899999999
Q ss_pred ChHHHHHHHHHh--------------------ccCC-eEEEEeecCccCc-------------c---------cc-----
Q psy2951 743 SFIGMEAAAFCA--------------------SKVK-SVTVVGRGAVPFQ-------------E---------SL----- 774 (1466)
Q Consensus 743 G~~g~e~A~~l~--------------------~~g~-~V~lv~~~~~~~~-------------~---------~~----- 774 (1466)
|++|+|+|..|+ +.+. +|+++.|.+.... + .+
T Consensus 154 G~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~~~~ft~~el~~l~~lp~~~~~~~~~~~~~~~~ 233 (460)
T 1cjc_A 154 GNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQD 233 (460)
T ss_dssp SHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTTHHH
T ss_pred CHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChHhhccCHHHHHHhhcCCCceeEechhhhcchhh
Confidence 999999999998 5675 7999999875310 0 11
Q ss_pred -----CH---HHHHHHHHHHHh--------------cCcEEEccceEEEEEecCCC-ceEEEECC---------------
Q psy2951 775 -----GK---EVGERITKLFES--------------KGVKFVMKANVSSFEKNEKN-DVTAANLD--------------- 816 (1466)
Q Consensus 775 -----~~---~~~~~~~~~l~~--------------~gv~~~~~~~v~~i~~~~~~-~~~~v~~~--------------- 816 (1466)
+. .+.+.+.+.+++ +||+++++..+.+|...+++ ++..+.+.
T Consensus 234 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~v~~v~~~~~~l~~~~~~~~~~~ 313 (460)
T 1cjc_A 234 RIKEAARPRKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVP 313 (460)
T ss_dssp HTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHHTCSEEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEE
T ss_pred hhhhccHHHHHHHHHHHHHHHhccccccccCCCCCCceEEEECCCChheEEcCCCCceEEEEEEEEEEEccccCCCcccC
Confidence 11 123444455555 89999999999999844324 55444442
Q ss_pred CC--cEEecCEEEEccccccCccccccCCc-eeeCCCcEEeCCCCCCC-CCCeEEeccccccCCcccCCceeeeccHHHH
Q psy2951 817 NG--TTIPADLVIVGIGTVLNTNYLDGKGV-ELNGQKAVVVNEYLETN-VPGVYAGGDIAYAPLHSFYNKNASIGHYQLA 892 (1466)
Q Consensus 817 ~g--~~i~~D~vi~a~G~~p~~~~~~~~gl-~~~~~G~i~vd~~~~t~-~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A 892 (1466)
+| ++++||+||+++|++|++ + .|+ +++++|++.+|+++||+ .|+|||+|||+..+.. .+..|
T Consensus 314 ~g~~~~i~~d~Vi~a~G~~p~~-l---~gl~~~d~~g~i~vn~~~rt~~~p~vya~Gd~~~g~~~----------~i~~a 379 (460)
T 1cjc_A 314 TGDVEDLPCGLVLSSIGYKSRP-I---DPSVPFDPKLGVVPNMEGRVVDVPGLYCSGWVKRGPTG----------VITTT 379 (460)
T ss_dssp EEEEEEEECSEEEECCCEECCC-C---CTTSCCBTTTTBCCEETTEETTCTTEEECTHHHHCTTC----------CHHHH
T ss_pred CCceEEEEcCEEEECCCCCCCC-C---CCCcccccCCCeeECCCCcCcCCCCEEEEEeCCcCCCc----------cHHHH
Confidence 34 579999999999999997 3 578 88888999999999999 7999999999976542 23579
Q ss_pred HHHHHHHHHHhccC
Q psy2951 893 QYHGRIAALNMVEK 906 (1466)
Q Consensus 893 ~~~g~~aA~~i~~~ 906 (1466)
+.+|+.+|.+|++.
T Consensus 380 ~~~g~~aa~~i~~~ 393 (460)
T 1cjc_A 380 MTDSFLTGQILLQD 393 (460)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999753
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-29 Score=321.91 Aligned_cols=331 Identities=16% Similarity=0.141 Sum_probs=218.8
Q ss_pred CCCCCCCeEEEEEEcCeEEEEEcccchhcccc--ccccccccCCCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcC
Q psy2951 551 PGMDSLPCYKVTIQNDDSVVVQARKDELKNKK--RKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITD 628 (1466)
Q Consensus 551 p~~~~l~~~~v~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~ 628 (1466)
+|..|..|+.....++....|..|+. .+++. .+.+....+....++|+|||||||||+||+.|+++|++ |+++|+
T Consensus 344 ~ci~Cn~C~~~~~~~~~~~~C~~n~~-~g~e~~~~~~~~~~~~~~~~~~VvIIGgGpAGl~aA~~L~~~G~~--Vtlie~ 420 (729)
T 1o94_A 344 VCIGCNVCISRWEIGGPPMICTQNAT-AGEEYRRGWHPEKFRQTKNKDSVLIVGAGPSGSEAARVLMESGYT--VHLTDT 420 (729)
T ss_dssp CCCCCCHHHHHHHHSSSCCCCSSCTT-TTTHHHHCCCTTCCCCCSSCCEEEEECCSHHHHHHHHHHHHTTCE--EEEECS
T ss_pred cccccchhcccccccCCceeeccCcc-ccccccccccccccccccCCceEEEECCCHHHHHHHHHHHHCCCe--EEEEeC
Confidence 45555444421012344556777776 34331 12222223445678999999999999999999999987 899999
Q ss_pred CCCCCCCCCccchhcc-cCcccccccCHhHhhh------CCcEEEEceEEEEeccccccEEEccCCCEEecCEEEEcCCC
Q psy2951 629 ENFLPYDRVKLSKQLD-IKADSILLRTEEFYKD------NDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGS 701 (1466)
Q Consensus 629 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------~gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~d~lviAtG~ 701 (1466)
++.+++.......... .....+..+....++. .++++..++ .++++++..+.||+||||||+
T Consensus 421 ~~~~GG~~~~~~~~pg~~~~~~~~~~~~~~i~~~~~~~~~~v~i~~~~-----------~v~~~~~~~~~~d~vviAtG~ 489 (729)
T 1o94_A 421 AEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQLALGQK-----------PMTADDVLQYGADKVIIATGA 489 (729)
T ss_dssp SSSTTTTHHHHTTSTTCGGGHHHHHHHHHHHHHHHHHSTTCEEECSCC-----------CCCHHHHHTSCCSEEEECCCE
T ss_pred CCCcCCeeeecccCCChHHHHHHHHHHHHHHHHhhcccCCceEEEeCe-----------EEehhhccccCCCEEEEcCCC
Confidence 8765432211110000 0111111222222221 244443333 233334456889999999998
Q ss_pred C--------CCcCCCCCCCC----cEEEecCHHHHHhhcccCCCCCcEEEEC--CChHHHHHHHHHhccCCeEEEEeecC
Q psy2951 702 S--------PRTISQADGVN----KVFYLRTVEDANNIAPHITPESNVVVIG--SSFIGMEAAAFCASKVKSVTVVGRGA 767 (1466)
Q Consensus 702 ~--------~~~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~vvVvG--~G~~g~e~A~~l~~~g~~V~lv~~~~ 767 (1466)
. |..|+++ |.+ +++ +..+... .....+++|+||| +|++|+|+|..|++.|.+||++++.+
T Consensus 490 ~~~~~~~~~p~~~~ip-G~~~~~~~v~---~~~~~l~--~~~~~gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~ 563 (729)
T 1o94_A 490 RWNTDGTNCLTHDPIP-GADASLPDQL---TPEQVMD--GKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH 563 (729)
T ss_dssp EECSSCCCTTTSSCCT-TCCTTSTTEE---CHHHHHH--CCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CcccccccCccCCCCC-CccccCCCEE---EHHHHhc--CCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc
Confidence 7 5667788 765 444 3344432 3344689999999 99999999999999999999999988
Q ss_pred ccCcc-ccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCC-cE------------------EecCEEE
Q psy2951 768 VPFQE-SLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG-TT------------------IPADLVI 827 (1466)
Q Consensus 768 ~~~~~-~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g-~~------------------i~~D~vi 827 (1466)
++.. .++.. ...+.+.|+++||++++++.+++|+. ++......+.++ ++ +++|.||
T Consensus 564 -l~~~~~~~~~-~~~~~~~l~~~GV~i~~~~~v~~i~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv 639 (729)
T 1o94_A 564 -LANYMHFTLE-YPNMMRRLHELHVEELGDHFCSRIEP--GRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLV 639 (729)
T ss_dssp -TTHHHHHTTC-HHHHHHHHHHTTCEEECSEEEEEEET--TEEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEE
T ss_pred -cccccccccc-HHHHHHHHHhCCCEEEcCcEEEEEEC--CeEEEEEecCCceEEecccccccccccCCcceeeeCCEEE
Confidence 4421 23323 45677888999999999999999983 221111112333 23 9999999
Q ss_pred EccccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCC
Q psy2951 828 VGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK 907 (1466)
Q Consensus 828 ~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~ 907 (1466)
+|+|++|++++++.++. .+|++++|+.|+|||+|||+... .+..|+.||+.||.+|.+..
T Consensus 640 ~a~G~~p~~~l~~~l~~--------~vd~~~~t~~~~VyAiGD~~~~~------------~~~~A~~~G~~aA~~i~~~l 699 (729)
T 1o94_A 640 LVTGRHSECTLWNELKA--------RESEWAENDIKGIYLIGDAEAPR------------LIADATFTGHRVAREIEEAN 699 (729)
T ss_dssp EESCEEECCHHHHHHHH--------TGGGTGGGTCCEEEECGGGTSCC------------CHHHHHHHHHHHHHTTTSSC
T ss_pred ECCCCCCChHHHHHHhh--------hcccccccCCCCeEEEeCccchh------------hHHHHHHHHHHHHHHhhhhc
Confidence 99999999887764321 26788999999999999998632 34689999999999998753
Q ss_pred CcCcccCeeeeeecCceeEE
Q psy2951 908 TSLSTIPFFWTMLFGVGFRF 927 (1466)
Q Consensus 908 ~~~~~~~~~~~~~~~~~~~~ 927 (1466)
.+..+|| |+..|+...++
T Consensus 700 -~~~~~p~-~~~~~~~~~~~ 717 (729)
T 1o94_A 700 -PQIAIPY-KRETIAWGTPH 717 (729)
T ss_dssp -TTSCCCC-CCCCCCTTCCS
T ss_pred -ccCCCCe-eeecccCcccc
Confidence 4567786 66677666544
|
| >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.5e-28 Score=293.58 Aligned_cols=287 Identities=15% Similarity=0.230 Sum_probs=207.6
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhc-cCcccccccChhhhccCCcEEEcCCeEEE
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD-IKADSILLRTEEFYKDNDIHVIKGKKIIS 1144 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 1144 (1466)
.++|+|||||+||+++|..|++.+...+|+|||+++.+ |.......... .....+.....+++++.+++++.++.+
T Consensus 6 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~-gg~~~~g~~p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v-- 82 (460)
T 1cjc_A 6 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVP-FGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEV-- 82 (460)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSS-CTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCB--
T ss_pred CceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcC-CceeecccCCCCccHHHHHHHHHHHHHhCCcEEEeeeEE--
Confidence 46899999999999999999999844599999998865 32110000000 011222223345677889999988744
Q ss_pred eecCCCCeEEecCCcEEecCeEEEecCCCC-CcCCCCCCCC--cEEEecCHHHH-------HhhhcccCCCCeEEEEcCC
Q psy2951 1145 DSELNEKKIKLQDGTSIDFTKIYLATGSSP-RTISQADGVN--KVFYLRTVEDA-------NNIAPHITPESNVVVIGSS 1214 (1466)
Q Consensus 1145 i~d~~~~~v~~~~g~~~~yd~lvlAtG~~~-~~~~~~~g~~--~v~~~~~~~~~-------~~l~~~~~~~~~vvVvG~g 1214 (1466)
. +.|.+++. .+.||+||+|||+.+ +.+++| |.+ ++++.+++... ..+...+ .+++|+|||+|
T Consensus 83 --~---~~V~~~~~-~~~~d~lVlAtGs~~~~~~~ip-G~~~~gv~~~~~~~~~~~~~~d~~~~~~~~-~~~~vvVIGgG 154 (460)
T 1cjc_A 83 --G---RDVTVQEL-QDAYHAVVLSYGAEDHQALDIP-GEELPGVFSARAFVGWYNGLPENRELAPDL-SCDTAVILGQG 154 (460)
T ss_dssp --T---TTBCHHHH-HHHSSEEEECCCCCEECCCCCT-TTTSTTEEEHHHHHHHHTTCGGGTTCCCCT-TSSEEEEESCS
T ss_pred --e---eEEEeccc-eEEcCEEEEecCcCCCCCCCCC-CCCCCcEEEHHHHHHHhhcCccccccccCC-CCCEEEEECCC
Confidence 1 23555443 478999999999985 778899 876 78877655322 1111122 48999999999
Q ss_pred HHHHHHHHHHh--------------------cCCC-eEEEEcCCCcCC--------------c--------ccc------
Q psy2951 1215 FIGMEAAAFCA--------------------SKVK-SVTVVGRGAVPF--------------Q--------ESL------ 1245 (1466)
Q Consensus 1215 ~~g~e~a~~l~--------------------~~g~-~v~vv~~~~~~~--------------~--------~~~------ 1245 (1466)
++|+|+|..|+ +.+. +|+++.|.+... + ..+
T Consensus 155 ~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~~~~ft~~el~~l~~lp~~~~~~~~~~~~~~~~~ 234 (460)
T 1cjc_A 155 NVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQDR 234 (460)
T ss_dssp HHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTTHHHH
T ss_pred HHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChHhhccCHHHHHHhhcCCCceeEechhhhcchhhh
Confidence 99999999998 5677 799999887431 1 010
Q ss_pred ----cH---HHHHHHHHHHHh--------------CCcEEEcCceEEEEEecCCC-cEEEEEcC---------------C
Q psy2951 1246 ----GK---EVGERITKLFES--------------KGVKFVMKANVSSFEKNEKN-DVTAANLD---------------N 1288 (1466)
Q Consensus 1246 ----~~---~~~~~l~~~~~~--------------~gv~~~~~~~v~~i~~~~~g-~~~~v~l~---------------~ 1288 (1466)
+. .+.+.|.+.+++ +||+++++..+.++...+++ ++..|++. +
T Consensus 235 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~v~~v~~~~~~l~~~~~~~~~~~~ 314 (460)
T 1cjc_A 235 IKEAARPRKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPT 314 (460)
T ss_dssp TTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHHTCSEEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEE
T ss_pred hhhccHHHHHHHHHHHHHHHhccccccccCCCCCCceEEEECCCChheEEcCCCCceEEEEEEEEEEEccccCCCcccCC
Confidence 11 134455555655 89999999999999832225 66556553 3
Q ss_pred C--CeeecCEEEEeeccccCccccccCCc-eeeCCCeEEeCCCcccc-CCCEEEecccccCCCccCCCceeeeecHHHHH
Q psy2951 1289 G--TTIPADLVIVGIGTVLNTNYLDGKGV-ELNGQKAVVVNEYLETN-VPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQ 1364 (1466)
Q Consensus 1289 g--~~i~~D~vv~a~G~~p~~~~~~~~gl-~~~~~G~i~vd~~~~t~-~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~ 1364 (1466)
| ++++||+||+++|+.|++ + .|+ +++.+|+|.+|+++||+ .|+|||+|||+..|... +..|.
T Consensus 315 g~~~~i~~d~Vi~a~G~~p~~-l---~gl~~~d~~g~i~vn~~~rt~~~p~vya~Gd~~~g~~~~----------i~~a~ 380 (460)
T 1cjc_A 315 GDVEDLPCGLVLSSIGYKSRP-I---DPSVPFDPKLGVVPNMEGRVVDVPGLYCSGWVKRGPTGV----------ITTTM 380 (460)
T ss_dssp EEEEEEECSEEEECCCEECCC-C---CTTSCCBTTTTBCCEETTEETTCTTEEECTHHHHCTTCC----------HHHHH
T ss_pred CceEEEEcCEEEECCCCCCCC-C---CCCcccccCCCeeECCCCcCcCCCCEEEEEeCCcCCCcc----------HHHHH
Confidence 4 579999999999999997 3 678 88887889999999999 79999999999766532 36799
Q ss_pred HHHHHHHHHhcCC
Q psy2951 1365 YHGRIAALNMVEK 1377 (1466)
Q Consensus 1365 ~qa~~aa~~i~g~ 1377 (1466)
.||+.+|.+|++.
T Consensus 381 ~~g~~aa~~i~~~ 393 (460)
T 1cjc_A 381 TDSFLTGQILLQD 393 (460)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999864
|
| >2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-27 Score=312.19 Aligned_cols=278 Identities=14% Similarity=0.142 Sum_probs=206.9
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccc-hhcc-cCcccccccCHhHhhhC-CcEEEEceEE
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLS-KQLD-IKADSILLRTEEFYKDN-DIHVIKGKKI 671 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~-gv~~~~~~~v 671 (1466)
.+||+||||||||++||..|++.|++ |+++|+++.+++.....+ ..+. ....++.....+.+.+. +++++.+++|
T Consensus 128 ~~dVvVIGaGpAGl~AA~~la~~G~~--V~lie~~~~~GG~~~~~~k~~i~~~~~~~~~~~~~~~l~~~~~v~~~~~~~V 205 (965)
T 2gag_A 128 HTDVLVVGAGPAGLAAAREASRSGAR--VMLLDERAEAGGTLLDTAGEQIDGMDSSAWIEQVTSELAEAEETTHLQRTTV 205 (965)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCC--EEEECSSSSSSGGGGGSSCCEETTEEHHHHHHHHHHHHHHSTTEEEESSEEE
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCc--EEEEeCCCCCCceeccCCccccCCCCHHHHHHHHHHHHhhcCCcEEEeCCEE
Confidence 57999999999999999999999987 899999876553222100 0111 11222333334445554 9999999888
Q ss_pred EEeccccccEEE---------c--------cCCCEEecCEEEEcCCCCCCcCCCCCCCC--cEEEecCHHHHHhhcccCC
Q psy2951 672 ISDSELNEKKIK---------L--------QDGTSIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHIT 732 (1466)
Q Consensus 672 ~~i~~~~~~~v~---------~--------~~~~~~~~d~lviAtG~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~ 732 (1466)
..+ +....... + .++.++.||+||||||+.|+.|++| |.+ +++...+..+..+... ..
T Consensus 206 ~~i-~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~~~ip-G~~~~gv~~~~~~~~~l~~~~-~~ 282 (965)
T 2gag_A 206 FGS-YDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHERPIVFE-NNDRPGIMLAGAVRSYLNRYG-VR 282 (965)
T ss_dssp EEE-ETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEECCCCCB-TCCSTTEEEHHHHHHHHHTTC-EE
T ss_pred Eee-ecCCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccCCCCCC-CCCCCCEEEhHHHHHHHHhcC-CC
Confidence 887 44322111 1 1123689999999999999999998 876 6776655544332111 22
Q ss_pred CCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEE
Q psy2951 733 PESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTA 812 (1466)
Q Consensus 733 ~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~ 812 (1466)
++++|+|||+|++|+|+|..|++.|.+|+++++.+.++. . .+.+++.||+++++..++++...+++++..
T Consensus 283 ~gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~~-----~-----~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~ 352 (965)
T 2gag_A 283 AGARIAVATTNDSAYELVRELAATGGVVAVIDARSSISA-----A-----AAQAVADGVQVISGSVVVDTEADENGELSA 352 (965)
T ss_dssp SCSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCCH-----H-----HHHHHHTTCCEEETEEEEEEEECTTSCEEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccch-----h-----HHHHHhCCeEEEeCCEeEEEeccCCCCEEE
Confidence 479999999999999999999999999999999886542 1 466889999999999999998421445555
Q ss_pred EECCC-------C--cEEecCEEEEccccccCccccccCCceeeCCCcEEeCCCCC-----CCCCCeEEeccccccCCcc
Q psy2951 813 ANLDN-------G--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLE-----TNVPGVYAGGDIAYAPLHS 878 (1466)
Q Consensus 813 v~~~~-------g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~-----t~~~~iya~GD~~~~~~~~ 878 (1466)
+.+.+ | +++++|.|++++|++|++++++.. .|.|.+|++++ |+.|+|||+|||+..+..
T Consensus 353 v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~~l~~~~------~g~i~vd~~~~~~v~~ts~p~IyAaGD~a~~~~l- 425 (965)
T 2gag_A 353 IVVAELDEARELGGTQRFEADVLAVAGGFNPVVHLHSQR------QGKLDWDTTIHAFVPADAVANQHLAGAMTGRLDT- 425 (965)
T ss_dssp EEEEEECTTCCEEEEEEEECSEEEEECCEEECCHHHHHT------TCCEEEETTTTEEEECSCCTTEEECGGGGTCCSH-
T ss_pred EEEEeccccCCCCceEEEEcCEEEECCCcCcChHHHHhC------CCcEEEcCcccccccCCCCCCEEEEEecCCchhH-
Confidence 66553 4 689999999999999999887654 35788888877 899999999999976432
Q ss_pred cCCceeeeccHHHHHHHHHHHHHHhcc
Q psy2951 879 FYNKNASIGHYQLAQYHGRIAALNMVE 905 (1466)
Q Consensus 879 ~~~~~~~~~~~~~A~~~g~~aA~~i~~ 905 (1466)
..|..||+.||.+|++
T Consensus 426 -----------~~A~~~G~~aA~~i~~ 441 (965)
T 2gag_A 426 -----------ASALSTGAATGAAAAT 441 (965)
T ss_dssp -----------HHHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHHH
Confidence 3899999999999975
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-26 Score=281.09 Aligned_cols=271 Identities=15% Similarity=0.181 Sum_probs=199.0
Q ss_pred CeEEEEcCchHHHHHHHHHHH---cCCC-ccEEEEcCCCCCCCCCCc----------------cchhc------------
Q psy2951 596 DTFIVVGGGPSGATCVETLRQ---NGFT-GKLYFITDENFLPYDRVK----------------LSKQL------------ 643 (1466)
Q Consensus 596 ~~vvVIGgG~AGl~aA~~l~~---~g~~-~~v~~~~~~~~~~~~~~~----------------~~~~~------------ 643 (1466)
++|+||||||||++||..|++ .|.+ ..|+++|+.+.+++.... +...+
T Consensus 3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~ 82 (464)
T 2xve_A 3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFA 82 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBT
T ss_pred CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccC
Confidence 699999999999999999999 8875 237788887543321110 00000
Q ss_pred --------------ccCcccccccCHhHhhhCCcE--EEEceEEEEeccccc----cEEEccC---C--CEEecCEEEEc
Q psy2951 644 --------------DIKADSILLRTEEFYKDNDIH--VIKGKKIISDSELNE----KKIKLQD---G--TSIDFTKIYLA 698 (1466)
Q Consensus 644 --------------~~~~~~~~~~~~~~~~~~gv~--~~~~~~v~~i~~~~~----~~v~~~~---~--~~~~~d~lviA 698 (1466)
......+..++..++++.+++ ++++++|..+ +... +.|++.+ + .++.||+||+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v-~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvA 161 (464)
T 2xve_A 83 DYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHV-EFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCC 161 (464)
T ss_dssp TBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEE-EEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEE-EEcCCCCcEEEEEEEcCCCceEEEEcCEEEEC
Confidence 011123333445556667887 8889989988 4432 3676654 3 57899999999
Q ss_pred CC--CCCCcCCCCCCCCc----EEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCcc
Q psy2951 699 TG--SSPRTISQADGVNK----VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQE 772 (1466)
Q Consensus 699 tG--~~~~~~~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~ 772 (1466)
|| +.|+.|+++ |.+. +++.....+. ....+|+|+|||+|++|+|+|..|++.|.+|+++.+.+.++..
T Consensus 162 tG~~s~p~~p~ip-G~~~~~g~~~hs~~~~~~-----~~~~~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~~~~ 235 (464)
T 2xve_A 162 TGHFSTPYVPEFE-GFEKFGGRILHAHDFRDA-----LEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPMGY 235 (464)
T ss_dssp CCSSSSBCCCCCB-TTTTCCSEEEEGGGCCCG-----GGGTTSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCCCCC
T ss_pred CCCCCCCccCCCC-CcccCCceEEehhhhCCH-----hHcCCCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCCCCC
Confidence 99 899999998 8762 3332222111 1124899999999999999999999999999999998876533
Q ss_pred ccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCcccccc-CCceeeCCCc
Q psy2951 773 SLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDG-KGVELNGQKA 851 (1466)
Q Consensus 773 ~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~-~gl~~~~~G~ 851 (1466)
.+ ..||+++ ..|++++. + .+.+.+|+++++|.||+|||++|+++++.. .++.++++|+
T Consensus 236 ~~-------------~~~V~~~--~~V~~i~~--~----~V~~~dG~~i~~D~Vi~atG~~p~~~~l~~~~gl~~~~~~~ 294 (464)
T 2xve_A 236 KW-------------PENWDER--PNLVRVDT--E----NAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRLVTNNRLW 294 (464)
T ss_dssp CC-------------CTTEEEC--SCEEEECS--S----EEEETTSCEEECSEEEECCCBCCCCTTBCTTTCCCCCSSSC
T ss_pred CC-------------CCceEEc--CCeEEEeC--C----EEEECCCCEEeCCEEEECCCCCCCCCCcCcccccccCCCcc
Confidence 22 2588887 67888862 2 477889999999999999999999998875 6888777656
Q ss_pred EEeCC---CCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCC
Q psy2951 852 VVVNE---YLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK 907 (1466)
Q Consensus 852 i~vd~---~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~ 907 (1466)
+ ++. .++|+.|+|||+||++... .+..|..||+.+|+++.|+.
T Consensus 295 v-~~~~~~~~~t~~p~i~aiGd~~~~~------------~~~~a~~qa~~~a~~l~G~~ 340 (464)
T 2xve_A 295 P-LNLYKGVVWEDNPKFFYIGMQDQWY------------SFNMFDAQAWYARDVIMGRL 340 (464)
T ss_dssp C-SSEETTTEESSSTTEEECSCSCCSS------------CHHHHHHHHHHHHHHHTTSS
T ss_pred c-ccccceEecCCCCCEEEEeCccccc------------chHHHHHHHHHHHHHHcCCC
Confidence 5 443 3578999999999987532 34689999999999999864
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=282.79 Aligned_cols=270 Identities=15% Similarity=0.198 Sum_probs=199.7
Q ss_pred CcEEEECCchHHHHHHHHHHh---cCCCCc---EEEEcCCCCCC----CCC---------C---CCchhhc--cC-----
Q psy2951 1067 DTFIVVGGGPSGATCVETLRQ---NGFTGK---LYFITDENFLP----YDR---------V---KLSKQLD--IK----- 1117 (1466)
Q Consensus 1067 ~~vvIVG~G~aGl~aA~~L~~---~g~~~~---i~li~~~~~~~----~~~---------~---~l~~~~~--~~----- 1117 (1466)
++|+|||||+||++||..|++ .|. + |+|||+++.++ |.. + .+...+. .+
T Consensus 3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~--~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~ 80 (464)
T 2xve_A 3 TRIAILGAGPSGMAQLRAFQSAQEKGA--EIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLE 80 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHHTTC--CCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTC
T ss_pred CcEEEECccHHHHHHHHHHHhhhhcCC--CCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcc
Confidence 589999999999999999999 888 7 99999986543 110 0 0000000 00
Q ss_pred c-------------------ccccccChhhhccCCcE--EEcCCeEEEeecCCCC----eEEecC---C--cEEecCeEE
Q psy2951 1118 A-------------------DSILLRTEEFYKDNDIH--VIKGKKIISDSELNEK----KIKLQD---G--TSIDFTKIY 1167 (1466)
Q Consensus 1118 ~-------------------~~~~~~~~~~~~~~~v~--~~~~~~v~~i~d~~~~----~v~~~~---g--~~~~yd~lv 1167 (1466)
. ..+.....+++++.+++ ++++++|+.+ +.... +|++.+ | .++.||+||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v-~~~~~~~~~~V~~~~~~~g~~~~~~~d~VV 159 (464)
T 2xve_A 81 FADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHV-EFNEDSQTFTVTVQDHTTDTIYSEEFDYVV 159 (464)
T ss_dssp BTTBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEE-EEETTTTEEEEEEEETTTTEEEEEEESEEE
T ss_pred cCCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEE-EEcCCCCcEEEEEEEcCCCceEEEEcCEEE
Confidence 0 00000011233445777 8899999999 76544 677765 3 578999999
Q ss_pred EecC--CCCCcCCCCCCCC---c-EEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCC
Q psy2951 1168 LATG--SSPRTISQADGVN---K-VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF 1241 (1466)
Q Consensus 1168 lAtG--~~~~~~~~~~g~~---~-v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~ 1241 (1466)
+||| +.|+.|++| |++ + +.+..++.+... ..+++|+|||+|.+|+|+|..|++.|.+|+++++.+.++
T Consensus 160 vAtG~~s~p~~p~ip-G~~~~~g~~~hs~~~~~~~~-----~~~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~~ 233 (464)
T 2xve_A 160 CCTGHFSTPYVPEFE-GFEKFGGRILHAHDFRDALE-----FKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPM 233 (464)
T ss_dssp ECCCSSSSBCCCCCB-TTTTCCSEEEEGGGCCCGGG-----GTTSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCCC
T ss_pred ECCCCCCCCccCCCC-CcccCCceEEehhhhCCHhH-----cCCCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCCC
Confidence 9999 799999998 876 2 343332222211 148999999999999999999999999999999988776
Q ss_pred cccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccCcccccc-CCceeeCC
Q psy2951 1242 QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDG-KGVELNGQ 1320 (1466)
Q Consensus 1242 ~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~~~~~~~-~gl~~~~~ 1320 (1466)
...+ ..||+++ ..|++++ ++ .|.+.||+++++|.||+|||+.|++++|.. .|+.++++
T Consensus 234 ~~~~-------------~~~V~~~--~~V~~i~--~~----~V~~~dG~~i~~D~Vi~atG~~p~~~~l~~~~gl~~~~~ 292 (464)
T 2xve_A 234 GYKW-------------PENWDER--PNLVRVD--TE----NAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRLVTNNR 292 (464)
T ss_dssp CCCC-------------CTTEEEC--SCEEEEC--SS----EEEETTSCEEECSEEEECCCBCCCCTTBCTTTCCCCCSS
T ss_pred CCCC-------------CCceEEc--CCeEEEe--CC----EEEECCCCEEeCCEEEECCCCCCCCCCcCcccccccCCC
Confidence 5433 2578887 6788886 22 388899999999999999999999999886 68887765
Q ss_pred CeEEeC---CCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCCCC
Q psy2951 1321 KAVVVN---EYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 1379 (1466)
Q Consensus 1321 G~i~vd---~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~~ 1379 (1466)
|++ ++ ..++|+.|+|||+|||+..+ .|..|..||+.+|++|.|+..
T Consensus 293 ~~v-~~~~~~~~~t~~p~i~aiGd~~~~~------------~~~~a~~qa~~~a~~l~G~~~ 341 (464)
T 2xve_A 293 LWP-LNLYKGVVWEDNPKFFYIGMQDQWY------------SFNMFDAQAWYARDVIMGRLP 341 (464)
T ss_dssp SCC-SSEETTTEESSSTTEEECSCSCCSS------------CHHHHHHHHHHHHHHHTTSSC
T ss_pred ccc-ccccceEecCCCCCEEEEeCccccc------------chHHHHHHHHHHHHHHcCCCC
Confidence 555 44 34678999999999987532 358899999999999999653
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8e-28 Score=308.73 Aligned_cols=299 Identities=17% Similarity=0.183 Sum_probs=210.3
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhccCcccccccChhhhccCCcEEE--cCCe
Q psy2951 1064 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVI--KGKK 1141 (1466)
Q Consensus 1064 ~~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~ 1141 (1466)
...++|+|||||+||++||..|++.|+ +|+|||+++.++........ +. ....+ ....+++.. .++.+ .+..
T Consensus 387 ~~~~~VvIIGgGpAGl~aA~~L~~~G~--~Vtlie~~~~~GG~~~~~~~-~p-g~~~~-~~~~~~~~~-~i~~~~~~~~~ 460 (729)
T 1o94_A 387 KNKDSVLIVGAGPSGSEAARVLMESGY--TVHLTDTAEKIGGHLNQVAA-LP-GLGEW-SYHRDYRET-QITKLLKKNKE 460 (729)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSSSTTTTHHHHTT-ST-TCGGG-HHHHHHHHH-HHHHHHHHSTT
T ss_pred cCCceEEEECCCHHHHHHHHHHHHCCC--eEEEEeCCCCcCCeeeeccc-CC-ChHHH-HHHHHHHHH-HHHHhhcccCC
Confidence 346799999999999999999999998 89999998875532111000 00 00000 000011110 11111 1112
Q ss_pred EEEeecCCCCeEEecCCcEEecCeEEEecCCC--------CCcCCCCCCCC----cEEEecCHHHHHhhhcccCCCCeEE
Q psy2951 1142 IISDSELNEKKIKLQDGTSIDFTKIYLATGSS--------PRTISQADGVN----KVFYLRTVEDANNIAPHITPESNVV 1209 (1466)
Q Consensus 1142 v~~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~--------~~~~~~~~g~~----~v~~~~~~~~~~~l~~~~~~~~~vv 1209 (1466)
+..+ +. ++.|.++++..+.||+||||||+. |+.+++| |.+ ++++ ..++ +......+++|+
T Consensus 461 ~v~i-~~-~~~v~~~~~~~~~~d~vviAtG~~~~~~~~~~p~~~~ip-G~~~~~~~v~~---~~~~--l~~~~~~gk~Vv 532 (729)
T 1o94_A 461 SQLA-LG-QKPMTADDVLQYGADKVIIATGARWNTDGTNCLTHDPIP-GADASLPDQLT---PEQV--MDGKKKIGKRVV 532 (729)
T ss_dssp CEEE-CS-CCCCCHHHHHTSCCSEEEECCCEEECSSCCCTTTSSCCT-TCCTTSTTEEC---HHHH--HHCCSCCCSEEE
T ss_pred ceEE-Ee-CeEEehhhccccCCCEEEEcCCCCcccccccCccCCCCC-CccccCCCEEE---HHHH--hcCCCCCCCeEE
Confidence 3344 33 234556566678999999999997 4567788 865 5553 4444 333445689999
Q ss_pred EEc--CCHHHHHHHHHHhcCCCeEEEEcCCCcCCcc-cccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEc
Q psy2951 1210 VIG--SSFIGMEAAAFCASKVKSVTVVGRGAVPFQE-SLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANL 1286 (1466)
Q Consensus 1210 VvG--~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~-~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l 1286 (1466)
||| +|++|+|+|..|++.|.+|+++++.+ ++.+ .++.. ...+.+.++++||++++++.+++++ . ++....+.+
T Consensus 533 VIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~~~~~~~~~-~~~~~~~l~~~GV~i~~~~~v~~i~-~-~~v~~~~~~ 608 (729)
T 1o94_A 533 ILNADTYFMAPSLAEKLATAGHEVTIVSGVH-LANYMHFTLE-YPNMMRRLHELHVEELGDHFCSRIE-P-GRMEIYNIW 608 (729)
T ss_dssp EEECCCSSHHHHHHHHHHHTTCEEEEEESSC-TTHHHHHTTC-HHHHHHHHHHTTCEEECSEEEEEEE-T-TEEEEEETT
T ss_pred EEcCCCCchHHHHHHHHHHcCCEEEEEeccc-cccccccccc-HHHHHHHHHhCCCEEEcCcEEEEEE-C-CeEEEEEec
Confidence 999 99999999999999999999999988 5442 23322 4567788899999999999999998 3 321111122
Q ss_pred CCC-Ce------------------eecCEEEEeeccccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCC
Q psy2951 1287 DNG-TT------------------IPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPL 1347 (1466)
Q Consensus 1287 ~~g-~~------------------i~~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~ 1347 (1466)
.++ ++ +++|.||+|+|..|++++++..+. .+|++++|+.|+|||+|||+.. .
T Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~~l~~~l~~--------~vd~~~~t~~~~VyAiGD~~~~-~ 679 (729)
T 1o94_A 609 GDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSECTLWNELKA--------RESEWAENDIKGIYLIGDAEAP-R 679 (729)
T ss_dssp CSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEECCHHHHHHHH--------TGGGTGGGTCCEEEECGGGTSC-C
T ss_pred CCceEEecccccccccccCCcceeeeCCEEEECCCCCCChHHHHHHhh--------hcccccccCCCCeEEEeCccch-h
Confidence 333 33 899999999999999988764221 2678999999999999999862 2
Q ss_pred ccCCCceeeeecHHHHHHHHHHHHHHhcCCCCCCCCCccceeccccccEEEEeeC
Q psy2951 1348 HSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSLSTIPFFWTMLFGVGFRFAGYA 1402 (1466)
Q Consensus 1348 ~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~~~~~~~p~~w~~~~~~~~~~~g~~ 1402 (1466)
.|..|..||+.||.+|.+. .++..+|| |+++++.++|+.|.+
T Consensus 680 -----------~~~~A~~~G~~aA~~i~~~-l~~~~~p~-~~~~~~~~~~~~~~~ 721 (729)
T 1o94_A 680 -----------LIADATFTGHRVAREIEEA-NPQIAIPY-KRETIAWGTPHMPGG 721 (729)
T ss_dssp -----------CHHHHHHHHHHHHHTTTSS-CTTSCCCC-CCCCCCTTCCSSTTC
T ss_pred -----------hHHHHHHHHHHHHHHhhhh-cccCCCCe-eeecccCcccccCCC
Confidence 2478999999999999875 45778897 999999999987653
|
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6e-27 Score=283.33 Aligned_cols=283 Identities=16% Similarity=0.169 Sum_probs=201.6
Q ss_pred CCeEEEEcCchHHHHHHHHHHH-c------CCCccEEEEcCCCCCCCCCCccchhc-ccCcccccccCHhHhhhCCcEEE
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQ-N------GFTGKLYFITDENFLPYDRVKLSKQL-DIKADSILLRTEEFYKDNDIHVI 666 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~-~------g~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gv~~~ 666 (1466)
+++|+||||||||++||..|++ . |.+ |+++++.+.+ |......... .....++..++.+++++.+++++
T Consensus 3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~--V~lie~~~~~-gg~~~~gv~p~~~~~~~~~~~~~~~~~~~~v~~~ 79 (456)
T 1lqt_A 3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMA--VDMLEMLPTP-WGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFF 79 (456)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEE--EEEEESSSSC-STHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEE
T ss_pred CCEEEEECcCHHHHHHHHHHHhhCccccCCCCe--EEEEecCCCC-CCccccccCCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 5799999999999999999999 7 655 8999988653 3222111101 12234555666677788899999
Q ss_pred EceEEEEeccccccEEEccCCCEEecCEEEEcCCCC-CCcCCCCCCCC--cEEEecCHHHHH----hh-ccc-CCCCCcE
Q psy2951 667 KGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSS-PRTISQADGVN--KVFYLRTVEDAN----NI-APH-ITPESNV 737 (1466)
Q Consensus 667 ~~~~v~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~-~~~~~~~~g~~--~~~~~~~~~~~~----~~-~~~-~~~~~~v 737 (1466)
.+.. + + +.|+++++ ++.||+||||||+. ++.+++| |.+ ++++..++.... .+ ... ...+++|
T Consensus 80 ~~v~---v-~---~~v~~~~~-~~~~d~lViAtG~~~~~~~~ip-G~~~~gv~~~~~~~~~~~~~~d~~~~~~~~~~~~v 150 (456)
T 1lqt_A 80 GNVV---V-G---EHVQPGEL-SERYDAVIYAVGAQSDRMLNIP-GEDLPGSIAAVDFVGWYNAHPHFEQVSPDLSGARA 150 (456)
T ss_dssp ESCC---B-T---TTBCHHHH-HHHSSEEEECCCCCEECCCCCT-TTTSTTEEEHHHHHHHHTTCGGGTTCCCCCCSSEE
T ss_pred eeEE---E-C---CEEEECCC-eEeCCEEEEeeCCCCCCCCCCC-CCCCCCcEEHHHHHhhhhcCcccccchhhcCCCEE
Confidence 8863 2 2 23444444 57899999999997 7888888 865 566554442211 11 011 1258999
Q ss_pred EEECCChHHHHHHHHHhcc--------------------C-CeEEEEeecCccCccccC-------------------HH
Q psy2951 738 VVIGSSFIGMEAAAFCASK--------------------V-KSVTVVGRGAVPFQESLG-------------------KE 777 (1466)
Q Consensus 738 vVvG~G~~g~e~A~~l~~~--------------------g-~~V~lv~~~~~~~~~~~~-------------------~~ 777 (1466)
+|||+|++|+|+|..|++. + .+|+++.|.+.... .+. .+
T Consensus 151 vVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~~-~f~~~elrel~~lp~~~~~~~~~~ 229 (456)
T 1lqt_A 151 VVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQA-AFTTLELRELADLDGVDVVIDPAE 229 (456)
T ss_dssp EEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGC-CCCHHHHHHGGGCTTEEEECCGGG
T ss_pred EEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChhhh-ccChHHHHHhhcCCCceeeeChHH
Confidence 9999999999999999874 4 59999999875321 111 01
Q ss_pred ------------------HHHHHHHHHHh------cCcEEEccceEEEEEecCCCceEEEECC----------------C
Q psy2951 778 ------------------VGERITKLFES------KGVKFVMKANVSSFEKNEKNDVTAANLD----------------N 817 (1466)
Q Consensus 778 ------------------~~~~~~~~l~~------~gv~~~~~~~v~~i~~~~~~~~~~v~~~----------------~ 817 (1466)
+.+.+.+.+.+ +||+++++..+.+|..+ +++..+.+. +
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~gv~i~~~~~~~~i~~~--~~v~~v~~~~~~~~~~~~~~~~~~~~ 307 (456)
T 1lqt_A 230 LDGITDEDAAAVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLTSPIEIKGK--RKVERIVLGRNELVSDGSGRVAAKDT 307 (456)
T ss_dssp GTTCCHHHHHHHCHHHHHHHHHHHHHHTCC-CTTSEEEEEECSEEEEEEECS--SSCCEEEEEEEEEEECSSSSEEEEEE
T ss_pred hccchhhhhhhccHHHHHHHHHHHHHhhcCCCCCCceEEEEeCCCCeEEecC--CcEeEEEEEEEEecCCCcccccccCC
Confidence 12344455555 79999999999999833 333334332 3
Q ss_pred C--cEEecCEEEEccccccCccccccCCceeeCCCcEEeCCCCC-CCCCCeEEeccccccCCcccCCceeeeccHHHHHH
Q psy2951 818 G--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLE-TNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQY 894 (1466)
Q Consensus 818 g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~-t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~ 894 (1466)
| ++++||+||+|+|++|++ + .+++++++|++.+|+++| |+.|+|||+|||+..|... +..|+.
T Consensus 308 g~~~~i~~d~vi~a~G~~p~~-l---~gl~~d~~g~i~vn~~~rvt~~pgvya~GD~~~gp~~~----------i~~a~~ 373 (456)
T 1lqt_A 308 GEREELPAQLVVRSVGYRGVP-T---PGLPFDDQSGTIPNVGGRINGSPNEYVVGWIKRGPTGV----------IGTNKK 373 (456)
T ss_dssp EEEEEEECSEEEECSCEECCC-C---TTSCCBTTTTBCCEETTEETTCSSEEECTHHHHCSCSC----------TTHHHH
T ss_pred CceEEEEcCEEEEccccccCC-C---CCCcccCCCCeeECCCCcCCCCCCEEEEeccCCCCchh----------HHHHHH
Confidence 4 469999999999999997 3 478888889999999999 8999999999999765532 236999
Q ss_pred HHHHHHHHhccC
Q psy2951 895 HGRIAALNMVEK 906 (1466)
Q Consensus 895 ~g~~aA~~i~~~ 906 (1466)
||..+|.+|++.
T Consensus 374 ~g~~~a~~i~~~ 385 (456)
T 1lqt_A 374 DAQDTVDTLIKN 385 (456)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999753
|
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6e-27 Score=283.38 Aligned_cols=284 Identities=16% Similarity=0.169 Sum_probs=203.4
Q ss_pred CCcEEEECCchHHHHHHHHHHh-c------CCCCcEEEEcCCCCCCCCCCCCchhhc-cCcccccccChhhhccCCcEEE
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQ-N------GFTGKLYFITDENFLPYDRVKLSKQLD-IKADSILLRTEEFYKDNDIHVI 1137 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~-~------g~~~~i~li~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~v~~~ 1137 (1466)
.++|+|||||+||++||..|++ . +. +|+|||+++++ |.......... .....+.....+++.+.+++++
T Consensus 3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~--~V~lie~~~~~-gg~~~~gv~p~~~~~~~~~~~~~~~~~~~~v~~~ 79 (456)
T 1lqt_A 3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDM--AVDMLEMLPTP-WGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFF 79 (456)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCE--EEEEEESSSSC-STHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEE
T ss_pred CCEEEEECcCHHHHHHHHHHHhhCccccCCCC--eEEEEecCCCC-CCccccccCCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 3689999999999999999999 7 66 99999998763 32211000000 1112222333456677899998
Q ss_pred cCCeEEEeecCCCCeEEecCCcEEecCeEEEecCCC-CCcCCCCCCCC--cEEEecCHHHHHhhh----ccc--CCCCeE
Q psy2951 1138 KGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSS-PRTISQADGVN--KVFYLRTVEDANNIA----PHI--TPESNV 1208 (1466)
Q Consensus 1138 ~~~~v~~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~-~~~~~~~~g~~--~v~~~~~~~~~~~l~----~~~--~~~~~v 1208 (1466)
.+++ + + +.|.++++ .+.||+||+|||+. |+.+++| |.+ ++++.+++....+-. ..+ -.+++|
T Consensus 80 ~~v~---v-~---~~v~~~~~-~~~~d~lViAtG~~~~~~~~ip-G~~~~gv~~~~~~~~~~~~~~d~~~~~~~~~~~~v 150 (456)
T 1lqt_A 80 GNVV---V-G---EHVQPGEL-SERYDAVIYAVGAQSDRMLNIP-GEDLPGSIAAVDFVGWYNAHPHFEQVSPDLSGARA 150 (456)
T ss_dssp ESCC---B-T---TTBCHHHH-HHHSSEEEECCCCCEECCCCCT-TTTSTTEEEHHHHHHHHTTCGGGTTCCCCCCSSEE
T ss_pred eeEE---E-C---CEEEECCC-eEeCCEEEEeeCCCCCCCCCCC-CCCCCCcEEHHHHHhhhhcCcccccchhhcCCCEE
Confidence 8853 4 3 34666665 58899999999997 7888898 876 777765442211100 111 147999
Q ss_pred EEEcCCHHHHHHHHHHhcC--------------------C-CeEEEEcCCCcCCccccc------------------HH-
Q psy2951 1209 VVIGSSFIGMEAAAFCASK--------------------V-KSVTVVGRGAVPFQESLG------------------KE- 1248 (1466)
Q Consensus 1209 vVvG~g~~g~e~a~~l~~~--------------------g-~~v~vv~~~~~~~~~~~~------------------~~- 1248 (1466)
+|||+|++|+|+|..|.+. + .+|+++.|....+..... ++
T Consensus 151 vVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~~~f~~~elrel~~lp~~~~~~~~~~~ 230 (456)
T 1lqt_A 151 VVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAEL 230 (456)
T ss_dssp EEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCCHHHHHHGGGCTTEEEECCGGGG
T ss_pred EEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChhhhccChHHHHHhhcCCCceeeeChHHh
Confidence 9999999999999999874 5 499999998744321100 11
Q ss_pred -----------------HHHHHHHHHHh------CCcEEEcCceEEEEEecCCCcEEEEEcC----------------CC
Q psy2951 1249 -----------------VGERITKLFES------KGVKFVMKANVSSFEKNEKNDVTAANLD----------------NG 1289 (1466)
Q Consensus 1249 -----------------~~~~l~~~~~~------~gv~~~~~~~v~~i~~~~~g~~~~v~l~----------------~g 1289 (1466)
+.+.+.+.+++ +||+++++..+.++. .+ +++..|++. +|
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~gv~i~~~~~~~~i~-~~-~~v~~v~~~~~~~~~~~~~~~~~~~~g 308 (456)
T 1lqt_A 231 DGITDEDAAAVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLTSPIEIK-GK-RKVERIVLGRNELVSDGSGRVAAKDTG 308 (456)
T ss_dssp TTCCHHHHHHHCHHHHHHHHHHHHHHTCC-CTTSEEEEEECSEEEEEEE-CS-SSCCEEEEEEEEEEECSSSSEEEEEEE
T ss_pred ccchhhhhhhccHHHHHHHHHHHHHhhcCCCCCCceEEEEeCCCCeEEe-cC-CcEeEEEEEEEEecCCCcccccccCCC
Confidence 13445555555 799999999999998 33 454445543 35
Q ss_pred --CeeecCEEEEeeccccCccccccCCceeeCCCeEEeCCCcc-ccCCCEEEecccccCCCccCCCceeeeecHHHHHHH
Q psy2951 1290 --TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLE-TNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYH 1366 (1466)
Q Consensus 1290 --~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~-t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~q 1366 (1466)
++++||+|++++|+.|++ + .|++++.+|++.+|+++| |+.|+|||+|||++.|... +..|..|
T Consensus 309 ~~~~i~~d~vi~a~G~~p~~-l---~gl~~d~~g~i~vn~~~rvt~~pgvya~GD~~~gp~~~----------i~~a~~~ 374 (456)
T 1lqt_A 309 EREELPAQLVVRSVGYRGVP-T---PGLPFDDQSGTIPNVGGRINGSPNEYVVGWIKRGPTGV----------IGTNKKD 374 (456)
T ss_dssp EEEEEECSEEEECSCEECCC-C---TTSCCBTTTTBCCEETTEETTCSSEEECTHHHHCSCSC----------TTHHHHH
T ss_pred ceEEEEcCEEEEccccccCC-C---CCCcccCCCCeeECCCCcCCCCCCEEEEeccCCCCchh----------HHHHHHH
Confidence 468999999999999997 3 578888888899999999 7899999999999876542 1469999
Q ss_pred HHHHHHHhcCC
Q psy2951 1367 GRIAALNMVEK 1377 (1466)
Q Consensus 1367 a~~aa~~i~g~ 1377 (1466)
|+.+|.+|++.
T Consensus 375 g~~~a~~i~~~ 385 (456)
T 1lqt_A 375 AQDTVDTLIKN 385 (456)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999863
|
| >2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-26 Score=304.24 Aligned_cols=277 Identities=13% Similarity=0.129 Sum_probs=209.1
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhc--cCcccccccChhhhcc-CCcEEEcCCeE
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD--IKADSILLRTEEFYKD-NDIHVIKGKKI 1142 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~-~~v~~~~~~~v 1142 (1466)
.++|||||||+||++||..|++.|+ +|+|||++++++......++... ....++.....+.+.+ .+++++.+++|
T Consensus 128 ~~dVvVIGaGpAGl~AA~~la~~G~--~V~lie~~~~~GG~~~~~~k~~i~~~~~~~~~~~~~~~l~~~~~v~~~~~~~V 205 (965)
T 2gag_A 128 HTDVLVVGAGPAGLAAAREASRSGA--RVMLLDERAEAGGTLLDTAGEQIDGMDSSAWIEQVTSELAEAEETTHLQRTTV 205 (965)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTC--CEEEECSSSSSSGGGGGSSCCEETTEEHHHHHHHHHHHHHHSTTEEEESSEEE
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCC--cEEEEeCCCCCCceeccCCccccCCCCHHHHHHHHHHHHhhcCCcEEEeCCEE
Confidence 4689999999999999999999998 99999998876522111111111 0111111111122334 48999999999
Q ss_pred EEeecCCCCeEEe-----------------cCCcEEecCeEEEecCCCCCcCCCCCCCC--cEEEecCHHHHHhhhcccC
Q psy2951 1143 ISDSELNEKKIKL-----------------QDGTSIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHIT 1203 (1466)
Q Consensus 1143 ~~i~d~~~~~v~~-----------------~~g~~~~yd~lvlAtG~~~~~~~~~~g~~--~v~~~~~~~~~~~l~~~~~ 1203 (1466)
..+ +..++...+ .++.++.||+||||||+.|+.+++| |.+ ++++.++..+..+.. ...
T Consensus 206 ~~i-~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~~~ip-G~~~~gv~~~~~~~~~l~~~-~~~ 282 (965)
T 2gag_A 206 FGS-YDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHERPIVFE-NNDRPGIMLAGAVRSYLNRY-GVR 282 (965)
T ss_dssp EEE-ETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEECCCCCB-TCCSTTEEEHHHHHHHHHTT-CEE
T ss_pred Eee-ecCCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccCCCCCC-CCCCCCEEEhHHHHHHHHhc-CCC
Confidence 998 765432111 1223689999999999999999999 876 788776555442211 123
Q ss_pred CCCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecC-CCcEE
Q psy2951 1204 PESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNE-KNDVT 1282 (1466)
Q Consensus 1204 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~-~g~~~ 1282 (1466)
++++|+|||+|++|+|+|..|++.|.+|+++++.+.++. . .+.+++.||++++++.+++++ .+ ++++.
T Consensus 283 ~gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~~-----~-----~~~l~~~GV~v~~~~~v~~i~-~~~~~~v~ 351 (965)
T 2gag_A 283 AGARIAVATTNDSAYELVRELAATGGVVAVIDARSSISA-----A-----AAQAVADGVQVISGSVVVDTE-ADENGELS 351 (965)
T ss_dssp SCSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCCH-----H-----HHHHHHTTCCEEETEEEEEEE-ECTTSCEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccch-----h-----HHHHHhCCeEEEeCCEeEEEe-ccCCCCEE
Confidence 478999999999999999999999999999999986653 1 456889999999999999998 42 45666
Q ss_pred EEEcCC-------C--CeeecCEEEEeeccccCccccccCCceeeCCCeEEeCCCcc-----ccCCCEEEecccccCCCc
Q psy2951 1283 AANLDN-------G--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLE-----TNVPGVYAGGDIAYAPLH 1348 (1466)
Q Consensus 1283 ~v~l~~-------g--~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~-----t~~~~v~a~GD~a~~p~~ 1348 (1466)
.|.+.+ | +++++|.|++++|..|++++++.. +|+|.+|++++ |+.|+|||+|||+..+..
T Consensus 352 ~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~~l~~~~------~g~i~vd~~~~~~v~~ts~p~IyAaGD~a~~~~l 425 (965)
T 2gag_A 352 AIVVAELDEARELGGTQRFEADVLAVAGGFNPVVHLHSQR------QGKLDWDTTIHAFVPADAVANQHLAGAMTGRLDT 425 (965)
T ss_dssp EEEEEEECTTCCEEEEEEEECSEEEEECCEEECCHHHHHT------TCCEEEETTTTEEEECSCCTTEEECGGGGTCCSH
T ss_pred EEEEEeccccCCCCceEEEEcCEEEECCCcCcChHHHHhC------CCcEEEcCcccccccCCCCCCEEEEEecCCchhH
Confidence 677764 5 689999999999999999987654 35688998887 789999999999976532
Q ss_pred cCCCceeeeecHHHHHHHHHHHHHHhcC
Q psy2951 1349 SFYNKNASIGHYQLAQYHGRIAALNMVE 1376 (1466)
Q Consensus 1349 ~~~~~~~~~~~~~~A~~qa~~aa~~i~g 1376 (1466)
..|..||+.||.+|++
T Consensus 426 ------------~~A~~~G~~aA~~i~~ 441 (965)
T 2gag_A 426 ------------ASALSTGAATGAAAAT 441 (965)
T ss_dssp ------------HHHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHHH
Confidence 5799999999999985
|
| >1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.3e-26 Score=281.19 Aligned_cols=253 Identities=17% Similarity=0.204 Sum_probs=198.7
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhc---cCcccccccChhhhccCCcEEEcCCeE
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD---IKADSILLRTEEFYKDNDIHVIKGKKI 1142 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~v 1142 (1466)
+++|||||||+||++||..|++. . +|+|||+++++++.....+.... ....++.....+.+ ..+++++.+++|
T Consensus 108 ~~dVvIIGgG~aGl~aA~~L~~~-~--~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l-~~~v~~~~~~~v 183 (493)
T 1y56_A 108 VVDVAIIGGGPAGIGAALELQQY-L--TVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKL-NENTKIYLETSA 183 (493)
T ss_dssp EESCCEECCSHHHHHHHHHHTTT-C--CEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTC-CTTEEEETTEEE
T ss_pred cCCEEEECccHHHHHHHHHHHhc-C--CEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHH-hcCCEEEcCCEE
Confidence 46899999999999999999998 6 99999999988876654332211 01111111112223 568999999999
Q ss_pred EEeecCCCCeEEe---cCCc--EEecCeEEEecCCCCCcCCCCCCCC--cEEEecCHHHHHhhhcc--cCCCCeEEEEcC
Q psy2951 1143 ISDSELNEKKIKL---QDGT--SIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPH--ITPESNVVVIGS 1213 (1466)
Q Consensus 1143 ~~i~d~~~~~v~~---~~g~--~~~yd~lvlAtG~~~~~~~~~~g~~--~v~~~~~~~~~~~l~~~--~~~~~~vvVvG~ 1213 (1466)
..+ +...+.+.+ +++. .+.||+||+|||+.|+.++++ |.+ +++... ++..+.+. ..++++++|+|+
T Consensus 184 ~~i-~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~~~~~-g~~~~gv~~~~---~~~~~~~~~~~~~~~~vvViGg 258 (493)
T 1y56_A 184 LGV-FDKGEYFLVPVVRGDKLIEILAKRVVLATGAIDSTMLFE-NNDMPGVFRRD---FALEVMNVWEVAPGRKVAVTGS 258 (493)
T ss_dssp CCC-EECSSSEEEEEEETTEEEEEEESCEEECCCEEECCCCCT-TTTSTTEEEHH---HHHHHHHTSCBCSCSEEEEEST
T ss_pred EEE-EcCCcEEEEEEecCCeEEEEECCEEEECCCCCccCCCCC-CCCCCCEEEcH---HHHHHHHhcccCCCCEEEEECC
Confidence 999 877665433 4454 689999999999999999898 876 787654 44444433 345799999999
Q ss_pred CHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeee
Q psy2951 1214 SFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIP 1293 (1466)
Q Consensus 1214 g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~ 1293 (1466)
|++|+| +.++++||++++++.|++++ .+ +++..|.+.+|++++
T Consensus 259 G~~gle-----------------------------------~~l~~~GV~v~~~~~v~~i~-~~-~~v~~v~~~~g~~i~ 301 (493)
T 1y56_A 259 KADEVI-----------------------------------QELERWGIDYVHIPNVKRVE-GN-EKVERVIDMNNHEYK 301 (493)
T ss_dssp THHHHH-----------------------------------HHHHHHTCEEEECSSEEEEE-CS-SSCCEEEETTCCEEE
T ss_pred CHHHHH-----------------------------------HHHHhCCcEEEeCCeeEEEe-cC-CceEEEEeCCCeEEE
Confidence 999998 45678899999999999998 33 456667889999999
Q ss_pred cCEEEEeeccccCccccccCCcee--eCCCeEE-eCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHH
Q psy2951 1294 ADLVIVGIGTVLNTNYLDGKGVEL--NGQKAVV-VNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIA 1370 (1466)
Q Consensus 1294 ~D~vv~a~G~~p~~~~~~~~gl~~--~~~G~i~-vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~a 1370 (1466)
+|.||+++|..|++++++.+|+.+ +++|++. +|++++ +.|+|||+|||+..+ ++..|..||++|
T Consensus 302 aD~Vv~a~G~~p~~~l~~~~g~~~~~~~~g~i~~vd~~~~-s~~~vya~GD~~~~~------------~~~~A~~~g~~a 368 (493)
T 1y56_A 302 VDALIFADGRRPDINPITQAGGKLRFRRGYYSPVLDEYHR-IKDGIYVAGSAVSIK------------PHYANYLEGKLV 368 (493)
T ss_dssp CSEEEECCCEEECCHHHHHTTCCEEEETTEEEECCCTTSE-EETTEEECSTTTCCC------------CHHHHHHHHHHH
T ss_pred eCEEEECCCcCcCchHHHhcCCCccccCCceeeccccccC-cCCCEEEEeccCCcc------------CHHHHHHHHHHH
Confidence 999999999999999999988765 5678887 899999 899999999998753 247899999999
Q ss_pred HHHhcCC
Q psy2951 1371 ALNMVEK 1377 (1466)
Q Consensus 1371 a~~i~g~ 1377 (1466)
|.+|++.
T Consensus 369 a~~i~~~ 375 (493)
T 1y56_A 369 GAYILKE 375 (493)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999863
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-26 Score=294.58 Aligned_cols=260 Identities=20% Similarity=0.246 Sum_probs=194.2
Q ss_pred cCCCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcc--cCcccccccCHhHhhhCCcEEEE
Q psy2951 590 LSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD--IKADSILLRTEEFYKDNDIHVIK 667 (1466)
Q Consensus 590 ~~~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~gv~~~~ 667 (1466)
.+...+++|+||||||||++||..|+++|++ |+++|+++.+++.... ...+. ....++..++..++++.+++++.
T Consensus 368 ~~~~~~~~vvIIGgG~AGl~aA~~l~~~g~~--V~lie~~~~~gg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~ 444 (671)
T 1ps9_A 368 LPAVQKKNLAVVGAGPAGLAFAINAAARGHQ--VTLFDAHSEIGGQFNI-AKQIPGKEEFYETLRYYRRMIEVTGVTLKL 444 (671)
T ss_dssp CSCSSCCEEEEECCSHHHHHHHHHHHTTTCE--EEEEESSSSSCTTHHH-HTTSTTCTTHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCCCCCCeEEEECCCHHHHHHHHHHHhCCCe--EEEEeCCCCCCCeeec-cccCCCHHHHHHHHHHHHHHHHHcCCEEEe
Confidence 3445678999999999999999999999987 8999998766543211 11111 11123334455667778999999
Q ss_pred ceEEEEeccccccEEEccCCCEE-ecCEEEEcCCCCCCcCCCCCCCC--cEEEecCHHHHHhhcccCCCCCcEEEECCCh
Q psy2951 668 GKKIISDSELNEKKIKLQDGTSI-DFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSF 744 (1466)
Q Consensus 668 ~~~v~~i~~~~~~~v~~~~~~~~-~~d~lviAtG~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~ 744 (1466)
++.|... .+ .||+||||||++|+.|+++ |.+ ++++. .+. +......+++|+|||+|+
T Consensus 445 ~~~v~~~--------------~~~~~d~lviAtG~~p~~~~i~-G~~~~~v~~~---~~~--l~~~~~~~~~VvVIGgG~ 504 (671)
T 1ps9_A 445 NHTVTAD--------------QLQAFDETILASGIVPRTPPID-GIDHPKVLSY---LDV--LRDKAPVGNKVAIIGCGG 504 (671)
T ss_dssp SCCCCSS--------------SSCCSSEEEECCCEEECCCCCB-TTTSTTEEEH---HHH--HTSCCCCCSEEEEECCHH
T ss_pred CcEecHH--------------HhhcCCEEEEccCCCcCCCCCC-CCCCCcEeeH---HHH--hhCCCCCCCeEEEECCCh
Confidence 9854221 23 8999999999999999998 876 45533 232 233334689999999999
Q ss_pred HHHHHHHHHhccC-------------------------------------CeEEEEeecCccCccccCHHHHHHHHHHHH
Q psy2951 745 IGMEAAAFCASKV-------------------------------------KSVTVVGRGAVPFQESLGKEVGERITKLFE 787 (1466)
Q Consensus 745 ~g~e~A~~l~~~g-------------------------------------~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~ 787 (1466)
+|+|+|..|++.| .+|+++.+.+..+...+++.....+.+.|+
T Consensus 505 ~g~E~A~~l~~~G~~vtv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~l~~~l~~~~~~~~~~~l~ 584 (671)
T 1ps9_A 505 IGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLL 584 (671)
T ss_dssp HHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHH
T ss_pred hHHHHHHHHHhcCCCcccchhhhhhhhcccccccccccccccccccCCCCcEEEEEEecchhhccccccccHHHHHHHHH
Confidence 9999999999876 356777777766656667777778889999
Q ss_pred hcCcEEEccceEEEEEecCCCceEEEECCCC--cEEecCEEEEccccccCccccccCCceeeCCCcEEeCCCCCCCCCCe
Q psy2951 788 SKGVKFVMKANVSSFEKNEKNDVTAANLDNG--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGV 865 (1466)
Q Consensus 788 ~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~i 865 (1466)
++||+++++.++++++. ++ + .+. .+| +++++|.||+|+|++|++++++.+ +...++|
T Consensus 585 ~~GV~v~~~~~v~~i~~--~~-v-~~~-~~G~~~~i~~D~Vi~a~G~~p~~~l~~~l----------------~~~g~~v 643 (671)
T 1ps9_A 585 SRGVKMIPGVSYQKIDD--DG-L-HVV-INGETQVLAVDNVVICAGQEPNRALAQPL----------------IDSGKTV 643 (671)
T ss_dssp HTTCEEECSCEEEEEET--TE-E-EEE-ETTEEEEECCSEEEECCCEEECCTTHHHH----------------HTTTCCE
T ss_pred hcCCEEEeCcEEEEEeC--Ce-E-EEe-cCCeEEEEeCCEEEECCCccccHHHHHHH----------------HhcCCCE
Confidence 99999999999999982 22 2 232 566 579999999999999998887642 1123789
Q ss_pred EEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHh
Q psy2951 866 YAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNM 903 (1466)
Q Consensus 866 ya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i 903 (1466)
|++|||+..... .+..|++||..+|.+|
T Consensus 644 ~aiGD~~~~~~~----------~~~~A~~~g~~aA~~i 671 (671)
T 1ps9_A 644 HLIGGCDVAMEL----------DARRAIAQGTRLALEI 671 (671)
T ss_dssp EECGGGTCCSSC----------CHHHHHHHHHHHHHHC
T ss_pred EEECCcCccCch----------hHHHHHHHHHHHHHhC
Confidence 999999876432 3578999999999986
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-25 Score=275.00 Aligned_cols=299 Identities=14% Similarity=0.077 Sum_probs=196.4
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCC---ccEEEEcCCCCCCCCCCccchhcc--------------------------
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFT---GKLYFITDENFLPYDRVKLSKQLD-------------------------- 644 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~---~~v~~~~~~~~~~~~~~~~~~~~~-------------------------- 644 (1466)
..+||+||||||||+++|..|+++|.+ ..|+++|+++.+++....+.....
T Consensus 29 ~~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l~ 108 (463)
T 3s5w_A 29 VVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYLH 108 (463)
T ss_dssp CEESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHHH
T ss_pred CcCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHhhh
Confidence 457999999999999999999999932 348999988765543321100000
Q ss_pred ---------------cCcccccccCHhHhhhCCcEEEEceEEEEecccc---cc----EEEccCCC----EEecCEEEEc
Q psy2951 645 ---------------IKADSILLRTEEFYKDNDIHVIKGKKIISDSELN---EK----KIKLQDGT----SIDFTKIYLA 698 (1466)
Q Consensus 645 ---------------~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~---~~----~v~~~~~~----~~~~d~lviA 698 (1466)
....++..++....++.+++++++++|+.+ +.. .. .|.+.++. ++.||+||+|
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i-~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlA 187 (463)
T 3s5w_A 109 KHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRI-EPMLSAGQVEALRVISRNADGEELVRTTRALVVS 187 (463)
T ss_dssp HTTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEE-EEEEETTEEEEEEEEEEETTSCEEEEEESEEEEC
T ss_pred hcCceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEE-EEecCCCceEEEEEEEecCCCceEEEEeCEEEEC
Confidence 011122223333445668999999999988 543 32 56666665 8999999999
Q ss_pred CCCCCCcCCCCCCCC---cEEEecCHHH-HHhhcccCCCCCcEEEECCChHHHHHHHHHhcc--CCeEEEEeecCccCcc
Q psy2951 699 TGSSPRTISQADGVN---KVFYLRTVED-ANNIAPHITPESNVVVIGSSFIGMEAAAFCASK--VKSVTVVGRGAVPFQE 772 (1466)
Q Consensus 699 tG~~~~~~~~~~g~~---~~~~~~~~~~-~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~--g~~V~lv~~~~~~~~~ 772 (1466)
||+.|..|+..++.. .+++.....+ ...+.....++++|+|||+|.+|+|+|..|++. +.+|++++|.+.+++.
T Consensus 188 tG~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~p~ 267 (463)
T 3s5w_A 188 PGGTPRIPQVFRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALKPA 267 (463)
T ss_dssp CCCEECCCGGGGGGTTCTTEEEGGGHHHHHCC-------CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCCBC
T ss_pred CCCCCCCcchhhhcCCCCcEEECHHHHhhHHHhhhcccCCCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCcCc
Confidence 999888776321332 2344333322 222211112589999999999999999999999 9999999999865321
Q ss_pred -------------------ccCHHHHHHHHHHHHh--------------------------cCcEEEccceEEEEEecCC
Q psy2951 773 -------------------SLGKEVGERITKLFES--------------------------KGVKFVMKANVSSFEKNEK 807 (1466)
Q Consensus 773 -------------------~~~~~~~~~~~~~l~~--------------------------~gv~~~~~~~v~~i~~~~~ 807 (1466)
.++.+....+.+.+.. .||+++++++|++++..++
T Consensus 268 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~~~~ 347 (463)
T 3s5w_A 268 DDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTNYSVVDTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATATAQ 347 (463)
T ss_dssp CCCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCCCCSEEETTEEEEEEEEETT
T ss_pred cCCccchhccChhHHHHHhcCCHHHHHHHHHHhhccCCCcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCCEEEEEEecCC
Confidence 1222222222222222 6999999999999985433
Q ss_pred CceEEEECC---CCc--EEecCEEEEccccccC--ccccccCCceeeCCCcEEeCCCCCCC-----CCCeEEeccccccC
Q psy2951 808 NDVTAANLD---NGT--TIPADLVIVGIGTVLN--TNYLDGKGVELNGQKAVVVNEYLETN-----VPGVYAGGDIAYAP 875 (1466)
Q Consensus 808 ~~~~~v~~~---~g~--~i~~D~vi~a~G~~p~--~~~~~~~gl~~~~~G~i~vd~~~~t~-----~~~iya~GD~~~~~ 875 (1466)
. ..+.+. +|+ ++++|.||+|||++|+ .++++.+...+ |.+.||+++++. .|+|||+|||....
T Consensus 348 -~-~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~~~~~~l~~l~~~~---g~i~v~~~~~~~~~~~~~~~Ifa~G~~~~~~ 422 (463)
T 3s5w_A 348 -G-IELALRDAGSGELSVETYDAVILATGYERQLHRQLLEPLAEYL---GDHEIGRDYRLQTDERCKVAIYAQGFSQASH 422 (463)
T ss_dssp -E-EEEEEEETTTCCEEEEEESEEEECCCEECCC-CTTTGGGGGGB---C--CCCTTSBCCBCTTBCSEEEESSCCHHHH
T ss_pred -E-EEEEEEEcCCCCeEEEECCEEEEeeCCCCCCccchhHHHHHHh---CCcccCcccccccCCCCCCeEEEcCCCcccC
Confidence 2 334443 565 4999999999999999 66776554333 789999999864 46799999998643
Q ss_pred CcccCCceeeeccHHHHHHHHHHHHHHhc
Q psy2951 876 LHSFYNKNASIGHYQLAQYHGRIAALNMV 904 (1466)
Q Consensus 876 ~~~~~~~~~~~~~~~~A~~~g~~aA~~i~ 904 (1466)
... .......|.+++.+++..+-
T Consensus 423 g~~------~~~l~~~a~r~~~i~~~~~~ 445 (463)
T 3s5w_A 423 GLS------DTLLSVLPVRAEEISGSLYQ 445 (463)
T ss_dssp CTT------TTSSTTHHHHHHHHHHHHHH
T ss_pred CcC------ccchhHHHHHHHHHHHHHHh
Confidence 321 01233578899988876653
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-25 Score=277.16 Aligned_cols=298 Identities=14% Similarity=0.083 Sum_probs=193.9
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCC---CcEEEEcCCCCCCCCCCCCchhhcc-------------------------
Q psy2951 1065 NKDTFIVVGGGPSGATCVETLRQNGFT---GKLYFITDENFLPYDRVKLSKQLDI------------------------- 1116 (1466)
Q Consensus 1065 ~~~~vvIVG~G~aGl~aA~~L~~~g~~---~~i~li~~~~~~~~~~~~l~~~~~~------------------------- 1116 (1466)
.+.+|||||||+||+++|..|++.|.. .+|+|||+++.+++....+......
T Consensus 29 ~~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l~ 108 (463)
T 3s5w_A 29 VVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYLH 108 (463)
T ss_dssp CEESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHHH
T ss_pred CcCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHhhh
Confidence 346899999999999999999999932 3999999998766544322100000
Q ss_pred ----------------CcccccccChhhhccCCcEEEcCCeEEEeecCC---CC----eEEecCCc----EEecCeEEEe
Q psy2951 1117 ----------------KADSILLRTEEFYKDNDIHVIKGKKIISDSELN---EK----KIKLQDGT----SIDFTKIYLA 1169 (1466)
Q Consensus 1117 ----------------~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~d~~---~~----~v~~~~g~----~~~yd~lvlA 1169 (1466)
....+......+.+..+++++++++|+.+ +.. .+ +|.+.++. ++.||+||+|
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i-~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlA 187 (463)
T 3s5w_A 109 KHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRI-EPMLSAGQVEALRVISRNADGEELVRTTRALVVS 187 (463)
T ss_dssp HTTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEE-EEEEETTEEEEEEEEEEETTSCEEEEEESEEEEC
T ss_pred hcCceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEE-EEecCCCceEEEEEEEecCCCceEEEEeCEEEEC
Confidence 00000000012234558899999999999 765 43 67777776 8999999999
Q ss_pred cCCCCCcCCCCCCCCc---EEEecCHHH-HHhhhcccCCCCeEEEEcCCHHHHHHHHHHhcC--CCeEEEEcCCCcCCcc
Q psy2951 1170 TGSSPRTISQADGVNK---VFYLRTVED-ANNIAPHITPESNVVVIGSSFIGMEAAAFCASK--VKSVTVVGRGAVPFQE 1243 (1466)
Q Consensus 1170 tG~~~~~~~~~~g~~~---v~~~~~~~~-~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~~--g~~v~vv~~~~~~~~~ 1243 (1466)
||+.|+.|+...++.+ +++...+.+ ...+......+++|+|||+|.+|+|+|..|++. +.+|++++|.+..++.
T Consensus 188 tG~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~p~ 267 (463)
T 3s5w_A 188 PGGTPRIPQVFRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALKPA 267 (463)
T ss_dssp CCCEECCCGGGGGGTTCTTEEEGGGHHHHHCC-------CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCCBC
T ss_pred CCCCCCCcchhhhcCCCCcEEECHHHHhhHHHhhhcccCCCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCcCc
Confidence 9998887762213332 344333322 222322223589999999999999999999999 8999999998865331
Q ss_pred -------------------cccHHHHHHHHHHHHh--------------------------CCcEEEcCceEEEEEecCC
Q psy2951 1244 -------------------SLGKEVGERITKLFES--------------------------KGVKFVMKANVSSFEKNEK 1278 (1466)
Q Consensus 1244 -------------------~~~~~~~~~l~~~~~~--------------------------~gv~~~~~~~v~~i~~~~~ 1278 (1466)
.++++....+.+.++. .||+++++++|++++ .++
T Consensus 268 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v~-~~~ 346 (463)
T 3s5w_A 268 DDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTNYSVVDTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERAT-ATA 346 (463)
T ss_dssp CCCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCCCCSEEETTEEEEEEE-EET
T ss_pred cCCccchhccChhHHHHHhcCCHHHHHHHHHHhhccCCCcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCCEEEEEE-ecC
Confidence 1112222222222221 699999999999998 333
Q ss_pred CcEEEEEcC---CCCe--eecCEEEEeeccccC--ccccccCCceeeCCCeEEeCCCcccc-----CCCEEEecccccCC
Q psy2951 1279 NDVTAANLD---NGTT--IPADLVIVGIGTVLN--TNYLDGKGVELNGQKAVVVNEYLETN-----VPGVYAGGDIAYAP 1346 (1466)
Q Consensus 1279 g~~~~v~l~---~g~~--i~~D~vv~a~G~~p~--~~~~~~~gl~~~~~G~i~vd~~~~t~-----~~~v~a~GD~a~~p 1346 (1466)
....|.+. +|++ +++|+||+|||+.|+ .+++....... |++.||+++++. .|+|||+|||+...
T Consensus 347 -~~~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~~~~~~l~~l~~~~---g~i~v~~~~~~~~~~~~~~~Ifa~G~~~~~~ 422 (463)
T 3s5w_A 347 -QGIELALRDAGSGELSVETYDAVILATGYERQLHRQLLEPLAEYL---GDHEIGRDYRLQTDERCKVAIYAQGFSQASH 422 (463)
T ss_dssp -TEEEEEEEETTTCCEEEEEESEEEECCCEECCC-CTTTGGGGGGB---C--CCCTTSBCCBCTTBCSEEEESSCCHHHH
T ss_pred -CEEEEEEEEcCCCCeEEEECCEEEEeeCCCCCCccchhHHHHHHh---CCcccCcccccccCCCCCCeEEEcCCCcccC
Confidence 33446655 6764 899999999999999 66776543332 679999999875 45699999998632
Q ss_pred CccCCCceeeeecHHHHHHHHHHHHHHh
Q psy2951 1347 LHSFYNKNASIGHYQLAQYHGRIAALNM 1374 (1466)
Q Consensus 1347 ~~~~~~~~~~~~~~~~A~~qa~~aa~~i 1374 (1466)
... ...+. ..|..++++++..+
T Consensus 423 g~~--~~~l~----~~a~r~~~i~~~~~ 444 (463)
T 3s5w_A 423 GLS--DTLLS----VLPVRAEEISGSLY 444 (463)
T ss_dssp CTT--TTSST----THHHHHHHHHHHHH
T ss_pred CcC--ccchh----HHHHHHHHHHHHHH
Confidence 211 00111 45677777776544
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.8e-25 Score=268.98 Aligned_cols=273 Identities=14% Similarity=0.138 Sum_probs=194.5
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccc---------------------------------
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLS--------------------------------- 640 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~--------------------------------- 640 (1466)
..++|+||||||||+++|..|++.|....|+++|+.+.+++......
T Consensus 5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~~ 84 (447)
T 2gv8_A 5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPL 84 (447)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCC
T ss_pred CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccCch
Confidence 35899999999999999999999998445889998754321110000
Q ss_pred -hhcc----------------------cCcccccccCHhHhhhCCcEEEEceEEEEeccccc--cEEEccC---CC---E
Q psy2951 641 -KQLD----------------------IKADSILLRTEEFYKDNDIHVIKGKKIISDSELNE--KKIKLQD---GT---S 689 (1466)
Q Consensus 641 -~~~~----------------------~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~--~~v~~~~---~~---~ 689 (1466)
..+. .....+..++..+.++.+..++++++|+.+ +... ..|++.+ |. +
T Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v-~~~~~~~~V~~~~~~~G~~~~~ 163 (447)
T 2gv8_A 85 YRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDI-EKKDGSWVVTYKGTKAGSPISK 163 (447)
T ss_dssp CTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEE-EEETTEEEEEEEESSTTCCEEE
T ss_pred hhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEE-EeCCCeEEEEEeecCCCCeeEE
Confidence 0000 001122223334445557788899999988 4433 4666654 65 7
Q ss_pred EecCEEEEcCCC--CCCcCCCCCCCC--------cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCe
Q psy2951 690 IDFTKIYLATGS--SPRTISQADGVN--------KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKS 759 (1466)
Q Consensus 690 ~~~d~lviAtG~--~~~~~~~~~g~~--------~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~ 759 (1466)
+.||+||+|||. .|+.|+++ |.+ .+++.....+... ..+++|+|||+|++|+|+|..|++.+.+
T Consensus 164 ~~~d~VVvAtG~~s~p~~p~i~-G~~~~~~~~~g~v~~~~~~~~~~~-----~~~k~VvVvG~G~sg~e~A~~l~~~~~~ 237 (447)
T 2gv8_A 164 DIFDAVSICNGHYEVPYIPNIK-GLDEYAKAVPGSVLHSSLFREPEL-----FVGESVLVVGGASSANDLVRHLTPVAKH 237 (447)
T ss_dssp EEESEEEECCCSSSSBCBCCCB-THHHHHHHSTTSEEEGGGCCCGGG-----GTTCCEEEECSSHHHHHHHHHHTTTSCS
T ss_pred EEeCEEEECCCCCCCCCCCCCC-ChhhhhccCCccEEEecccCChhh-----cCCCEEEEEccCcCHHHHHHHHHHHhCC
Confidence 999999999997 88899888 864 1443333222211 2489999999999999999999999999
Q ss_pred -EEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcE-EecCEEEEccccccCcc
Q psy2951 760 -VTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTT-IPADLVIVGIGTVLNTN 837 (1466)
Q Consensus 760 -V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~-i~~D~vi~a~G~~p~~~ 837 (1466)
|++++|.+.. +++.||++ ...|+++.. ++. .|.+.||++ +++|.||+|||++|+++
T Consensus 238 ~V~l~~r~~~~----------------l~~~~i~~--~~~v~~~~~-~~~---~v~~~dG~~~~~~D~vi~atG~~~~~~ 295 (447)
T 2gv8_A 238 PIYQSLLGGGD----------------IQNESLQQ--VPEITKFDP-TTR---EIYLKGGKVLSNIDRVIYCTGYLYSVP 295 (447)
T ss_dssp SEEEECTTCCS----------------CBCSSEEE--ECCEEEEET-TTT---EEEETTTEEECCCSEEEECCCBCCCCC
T ss_pred cEEEEeCCCCc----------------CCCCCeEE--ecCeEEEec-CCC---EEEECCCCEeccCCEEEECCCCCcCCC
Confidence 9999998754 34567774 567888862 222 577888886 79999999999999999
Q ss_pred c-----cccCCceeeCCCcEEeCCCCC---CCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCC
Q psy2951 838 Y-----LDGKGVELNGQKAVVVNEYLE---TNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK 907 (1466)
Q Consensus 838 ~-----~~~~gl~~~~~G~i~vd~~~~---t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~ 907 (1466)
+ ++..+..+..++.+.++.+.+ +++|+||++||+.... .++.|..||+.+|++|.|+.
T Consensus 296 ~l~~~~l~~~~~~i~~~~~~~~~~~~~v~~~~~p~l~~~G~~~~~~------------~~~~a~~qa~~~a~~~~g~~ 361 (447)
T 2gv8_A 296 FPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVV------------PFPTSQAQAAFLARVWSGRL 361 (447)
T ss_dssp CHHHHSCCSTTTCCCSSSSSCCSEETTTEETTCTTEEESSCCBSSC------------HHHHHHHHHHHHHHHHTTSS
T ss_pred CCcccccccccCceecCCCcccccccccccCCCCcEEEEecccccc------------CchHHHHHHHHHHHHHcCCC
Confidence 9 776533333345555665555 6899999999987542 35789999999999999863
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=99.92 E-value=7e-26 Score=290.06 Aligned_cols=273 Identities=18% Similarity=0.156 Sum_probs=199.2
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhc--cCcccccccChhhhccC-CcEEEcCC
Q psy2951 1064 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD--IKADSILLRTEEFYKDN-DIHVIKGK 1140 (1466)
Q Consensus 1064 ~~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~-~v~~~~~~ 1140 (1466)
...++|||||||+||++||..|+++|+ +|+|||+++.+++.... ...+. .....+.......+.+. ++++++++
T Consensus 389 ~~~~~VvIIGgG~AGl~aA~~La~~G~--~V~liE~~~~~GG~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~gv~~~~~~ 465 (690)
T 3k30_A 389 ESDARVLVVGAGPSGLEAARALGVRGY--DVVLAEAGRDLGGRVTQ-ESALPGLSAWGRVKEYREAVLAELPNVEIYRES 465 (690)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHHHTC--EEEEECSSSSSCTHHHH-HHTSTTCGGGGHHHHHHHHHHHTCTTEEEESSC
T ss_pred cccceEEEECCCHHHHHHHHHHHHCCC--eEEEEecCCCCCCEeee-ccCCCchhHHHHHHHHHHHHHHHcCCCEEEECC
Confidence 346799999999999999999999998 99999998865532110 00000 11112222223445555 88888887
Q ss_pred eEEEeecCCCCeEEecCCcEEecCeEEEecCCCC--------CcCCCCCCCCcEEEecCHHHHHhhhcccCCCCeEEEEc
Q psy2951 1141 KIISDSELNEKKIKLQDGTSIDFTKIYLATGSSP--------RTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIG 1212 (1466)
Q Consensus 1141 ~v~~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~~--------~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~~vvVvG 1212 (1466)
+++ .+++.++.||+||+|||+.| ..++++ |.+....+ +..+.. ......+++|+|||
T Consensus 466 ~v~-----------~~~~~~~~~d~lvlAtG~~~~~~~~~~~~~~~i~-G~~~~~v~-~~~~~l--~~~~~~g~~VvViG 530 (690)
T 3k30_A 466 PMT-----------GDDIVEFGFEHVITATGATWRTDGVARFHTTALP-IAEGMQVL-GPDDLF--AGRLPDGKKVVVYD 530 (690)
T ss_dssp CCC-----------HHHHHHTTCCEEEECCCEEECSSCCSSSCSSCCC-BCTTSEEE-CHHHHH--TTCCCSSSEEEEEE
T ss_pred eec-----------HHHHhhcCCCEEEEcCCCccccccccccCCCCCC-CCCCCcEE-cHHHHh--CCCCCCCCEEEEEc
Confidence 432 23445688999999999984 467777 77622222 344443 33455688999999
Q ss_pred --CCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCC
Q psy2951 1213 --SSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGT 1290 (1466)
Q Consensus 1213 --~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~ 1290 (1466)
+|++|+|+|..|++.|.+|+++++.+..+....++.....+.+.++++||+++++++|++++ .++..+..+...+++
T Consensus 531 ~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~-~~~~~v~~~~~~~~~ 609 (690)
T 3k30_A 531 DDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVG-AGGVTVRDTYASIER 609 (690)
T ss_dssp CSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGGGGGTCHHHHHHHHHHTTCEEEESEEEEEEE-TTEEEEEETTTCCEE
T ss_pred CCCCccHHHHHHHHHhCCCeeEEEecccccccccccchhHHHHHHHHHHCCCEEEcCcEEEEEE-CCeEEEEEccCCeEE
Confidence 99999999999999999999999998777655556677888999999999999999999998 332111111123567
Q ss_pred eeecCEEEEeeccccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHH
Q psy2951 1291 TIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIA 1370 (1466)
Q Consensus 1291 ~i~~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~a 1370 (1466)
++++|.||+|+|..|++++++..+. .+. +|+.|+|||+|||+..+.. ..|..||+.|
T Consensus 610 ~i~aD~VV~A~G~~p~~~l~~~l~~----~~~-------~t~~~~VyaiGD~~~~~~~------------~~A~~~g~~a 666 (690)
T 3k30_A 610 ELECDAVVMVTARLPREELYLDLVA----RRD-------AGEIASVRGIGDAWAPGTI------------AAAVWSGRRA 666 (690)
T ss_dssp EEECSEEEEESCEEECCHHHHHHHH----HHH-------HTSCSEEEECGGGTSCBCH------------HHHHHHHHHH
T ss_pred EEECCEEEECCCCCCChHHHHHHhh----hhc-------ccCCCCEEEEeCCCchhhH------------HHHHHHHHHH
Confidence 8999999999999999988765321 121 7889999999999875432 5699999999
Q ss_pred HHHhcCCC
Q psy2951 1371 ALNMVEKK 1378 (1466)
Q Consensus 1371 a~~i~g~~ 1378 (1466)
|.||++..
T Consensus 667 a~~i~~~l 674 (690)
T 3k30_A 667 AEEFDAVL 674 (690)
T ss_dssp HHHTTCCC
T ss_pred HHHHHhhc
Confidence 99999863
|
| >1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-25 Score=274.87 Aligned_cols=255 Identities=18% Similarity=0.215 Sum_probs=193.0
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhc-cc--CcccccccCHhHhhhCCcEEEEceEE
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL-DI--KADSILLRTEEFYKDNDIHVIKGKKI 671 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~gv~~~~~~~v 671 (1466)
.+||+|||||+||++||+.|+++ ++ |+++|+++.+++......... +. ...++..++.+.+ +.+++++.+++|
T Consensus 108 ~~dVvIIGgG~aGl~aA~~L~~~-~~--V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l-~~~v~~~~~~~v 183 (493)
T 1y56_A 108 VVDVAIIGGGPAGIGAALELQQY-LT--VALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKL-NENTKIYLETSA 183 (493)
T ss_dssp EESCCEECCSHHHHHHHHHHTTT-CC--EEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTC-CTTEEEETTEEE
T ss_pred cCCEEEECccHHHHHHHHHHHhc-CC--EEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHH-hcCCEEEcCCEE
Confidence 46899999999999999999998 55 999999887766543322111 11 1222223333333 569999999988
Q ss_pred EEeccccccEE--Ec-cCCC--EEecCEEEEcCCCCCCcCCCCCCCC--cEEEecCHHHHHhhcccCCCCCcEEEECCCh
Q psy2951 672 ISDSELNEKKI--KL-QDGT--SIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSF 744 (1466)
Q Consensus 672 ~~i~~~~~~~v--~~-~~~~--~~~~d~lviAtG~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~ 744 (1466)
..+ +...+.+ .. .++. .+.||+||||||+.|+.|+++ |.+ +++...+.....+.. ...++++++|||+|+
T Consensus 184 ~~i-~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~~~~~-g~~~~gv~~~~~~~~~~~~~-~~~~~~~vvViGgG~ 260 (493)
T 1y56_A 184 LGV-FDKGEYFLVPVVRGDKLIEILAKRVVLATGAIDSTMLFE-NNDMPGVFRRDFALEVMNVW-EVAPGRKVAVTGSKA 260 (493)
T ss_dssp CCC-EECSSSEEEEEEETTEEEEEEESCEEECCCEEECCCCCT-TTTSTTEEEHHHHHHHHHTS-CBCSCSEEEEESTTH
T ss_pred EEE-EcCCcEEEEEEecCCeEEEEECCEEEECCCCCccCCCCC-CCCCCCEEEcHHHHHHHHhc-ccCCCCEEEEECCCH
Confidence 877 5444322 22 3343 689999999999999999988 876 676544333322211 124579999999999
Q ss_pred HHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecC
Q psy2951 745 IGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPAD 824 (1466)
Q Consensus 745 ~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D 824 (1466)
+|+| +.++++||+++++..+++++.+ +++..+.+++|+++++|
T Consensus 261 ~gle-----------------------------------~~l~~~GV~v~~~~~v~~i~~~--~~v~~v~~~~g~~i~aD 303 (493)
T 1y56_A 261 DEVI-----------------------------------QELERWGIDYVHIPNVKRVEGN--EKVERVIDMNNHEYKVD 303 (493)
T ss_dssp HHHH-----------------------------------HHHHHHTCEEEECSSEEEEECS--SSCCEEEETTCCEEECS
T ss_pred HHHH-----------------------------------HHHHhCCcEEEeCCeeEEEecC--CceEEEEeCCCeEEEeC
Confidence 9988 4467789999999999999832 34556778889999999
Q ss_pred EEEEccccccCccccccCCcee--eCCCcEE-eCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHH
Q psy2951 825 LVIVGIGTVLNTNYLDGKGVEL--NGQKAVV-VNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAAL 901 (1466)
Q Consensus 825 ~vi~a~G~~p~~~~~~~~gl~~--~~~G~i~-vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~ 901 (1466)
.||+|+|++|++++++.+|+++ +++|++. +|++++ +.|+|||+|||+..+ ++..|..||++||.
T Consensus 304 ~Vv~a~G~~p~~~l~~~~g~~~~~~~~g~i~~vd~~~~-s~~~vya~GD~~~~~------------~~~~A~~~g~~aa~ 370 (493)
T 1y56_A 304 ALIFADGRRPDINPITQAGGKLRFRRGYYSPVLDEYHR-IKDGIYVAGSAVSIK------------PHYANYLEGKLVGA 370 (493)
T ss_dssp EEEECCCEEECCHHHHHTTCCEEEETTEEEECCCTTSE-EETTEEECSTTTCCC------------CHHHHHHHHHHHHH
T ss_pred EEEECCCcCcCchHHHhcCCCccccCCceeeccccccC-cCCCEEEEeccCCcc------------CHHHHHHHHHHHHH
Confidence 9999999999999998888765 5788887 899999 999999999998753 34689999999999
Q ss_pred HhccC
Q psy2951 902 NMVEK 906 (1466)
Q Consensus 902 ~i~~~ 906 (1466)
+|.+.
T Consensus 371 ~i~~~ 375 (493)
T 1y56_A 371 YILKE 375 (493)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99764
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.2e-25 Score=267.36 Aligned_cols=273 Identities=14% Similarity=0.162 Sum_probs=196.1
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCC----CCCC------------------------------CCc
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP----YDRV------------------------------KLS 1111 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~----~~~~------------------------------~l~ 1111 (1466)
.++|+|||||++|+++|..|++.|...+|+|||+++..+ |... .+.
T Consensus 6 ~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~~~ 85 (447)
T 2gv8_A 6 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLY 85 (447)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCCC
T ss_pred CCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccCchh
Confidence 578999999999999999999998767899999986432 1110 000
Q ss_pred hhhcc-------Cccc---------------ccccChhhhccCCcEEEcCCeEEEeecCCCC--eEEecC---Cc---EE
Q psy2951 1112 KQLDI-------KADS---------------ILLRTEEFYKDNDIHVIKGKKIISDSELNEK--KIKLQD---GT---SI 1161 (1466)
Q Consensus 1112 ~~~~~-------~~~~---------------~~~~~~~~~~~~~v~~~~~~~v~~i~d~~~~--~v~~~~---g~---~~ 1161 (1466)
..+.. .... +.....++.+..+..++++++|+.+ +.... .|++.+ |. ++
T Consensus 86 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v-~~~~~~~~V~~~~~~~G~~~~~~ 164 (447)
T 2gv8_A 86 RDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDI-EKKDGSWVVTYKGTKAGSPISKD 164 (447)
T ss_dssp TTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEE-EEETTEEEEEEEESSTTCCEEEE
T ss_pred hhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEE-EeCCCeEEEEEeecCCCCeeEEE
Confidence 00000 0000 0000012333446678899999999 76544 566665 66 79
Q ss_pred ecCeEEEecCC--CCCcCCCCCCCC--------cEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHHHhcCCCe-
Q psy2951 1162 DFTKIYLATGS--SPRTISQADGVN--------KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKS- 1230 (1466)
Q Consensus 1162 ~yd~lvlAtG~--~~~~~~~~~g~~--------~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~- 1230 (1466)
.||+||+|||+ .|+.|++| |++ .+++.+++.+...+ .+++|+|||+|++|+|+|..|++.+.+
T Consensus 165 ~~d~VVvAtG~~s~p~~p~i~-G~~~~~~~~~g~v~~~~~~~~~~~~-----~~k~VvVvG~G~sg~e~A~~l~~~~~~~ 238 (447)
T 2gv8_A 165 IFDAVSICNGHYEVPYIPNIK-GLDEYAKAVPGSVLHSSLFREPELF-----VGESVLVVGGASSANDLVRHLTPVAKHP 238 (447)
T ss_dssp EESEEEECCCSSSSBCBCCCB-THHHHHHHSTTSEEEGGGCCCGGGG-----TTCCEEEECSSHHHHHHHHHHTTTSCSS
T ss_pred EeCEEEECCCCCCCCCCCCCC-ChhhhhccCCccEEEecccCChhhc-----CCCEEEEEccCcCHHHHHHHHHHHhCCc
Confidence 99999999998 88888888 864 25554444343222 389999999999999999999999999
Q ss_pred EEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCe-eecCEEEEeeccccCccc
Q psy2951 1231 VTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTT-IPADLVIVGIGTVLNTNY 1309 (1466)
Q Consensus 1231 v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~-i~~D~vv~a~G~~p~~~~ 1309 (1466)
|+++.+.+.. +++.||.+ ...|+++. .++ . .|.+.||++ +++|.||+|||+.|+++|
T Consensus 239 V~l~~r~~~~----------------l~~~~i~~--~~~v~~~~-~~~-~--~v~~~dG~~~~~~D~vi~atG~~~~~~~ 296 (447)
T 2gv8_A 239 IYQSLLGGGD----------------IQNESLQQ--VPEITKFD-PTT-R--EIYLKGGKVLSNIDRVIYCTGYLYSVPF 296 (447)
T ss_dssp EEEECTTCCS----------------CBCSSEEE--ECCEEEEE-TTT-T--EEEETTTEEECCCSEEEECCCBCCCCCC
T ss_pred EEEEeCCCCc----------------CCCCCeEE--ecCeEEEe-cCC-C--EEEECCCCEeccCCEEEECCCCCcCCCC
Confidence 9999998744 34567764 56788887 333 2 488899987 799999999999999999
Q ss_pred -----cccCCceeeCCCeEEeCCCcc---ccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCCCC
Q psy2951 1310 -----LDGKGVELNGQKAVVVNEYLE---TNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 1379 (1466)
Q Consensus 1310 -----~~~~gl~~~~~G~i~vd~~~~---t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~~ 1379 (1466)
|+..+..+..++.+.++.+.+ +++|+||++||+...+ .|..|..||+.+|++|+|...
T Consensus 297 l~~~~l~~~~~~i~~~~~~~~~~~~~v~~~~~p~l~~~G~~~~~~------------~~~~a~~qa~~~a~~~~g~~~ 362 (447)
T 2gv8_A 297 PSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVV------------PFPTSQAQAAFLARVWSGRLK 362 (447)
T ss_dssp HHHHSCCSTTTCCCSSSSSCCSEETTTEETTCTTEEESSCCBSSC------------HHHHHHHHHHHHHHHHTTSSC
T ss_pred CcccccccccCceecCCCcccccccccccCCCCcEEEEecccccc------------CchHHHHHHHHHHHHHcCCCC
Confidence 876422222234455554544 6799999999986532 458999999999999999653
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-23 Score=269.02 Aligned_cols=256 Identities=20% Similarity=0.255 Sum_probs=192.2
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhcc--CcccccccChhhhccCCcEEEcCCeE
Q psy2951 1065 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDI--KADSILLRTEEFYKDNDIHVIKGKKI 1142 (1466)
Q Consensus 1065 ~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~v 1142 (1466)
..++|||||||+||++||..|++.|+ +|+|||+++++++... ++..+.. ....+.....+++++.++++++++.|
T Consensus 372 ~~~~vvIIGgG~AGl~aA~~l~~~g~--~V~lie~~~~~gg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v 448 (671)
T 1ps9_A 372 QKKNLAVVGAGPAGLAFAINAAARGH--QVTLFDAHSEIGGQFN-IAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTV 448 (671)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTC--EEEEEESSSSSCTTHH-HHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCC
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCC--eEEEEeCCCCCCCeee-ccccCCCHHHHHHHHHHHHHHHHHcCCEEEeCcEe
Confidence 45789999999999999999999998 9999999987765421 1111110 11111111234456679999998854
Q ss_pred EEeecCCCCeEEecCCcEE-ecCeEEEecCCCCCcCCCCCCCC--cEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHH
Q psy2951 1143 ISDSELNEKKIKLQDGTSI-DFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGME 1219 (1466)
Q Consensus 1143 ~~i~d~~~~~v~~~~g~~~-~yd~lvlAtG~~~~~~~~~~g~~--~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e 1219 (1466)
... .+ .||+||||||++|+.|+++ |.+ ++++. .+. +......+++|+|||+|++|+|
T Consensus 449 ~~~--------------~~~~~d~lviAtG~~p~~~~i~-G~~~~~v~~~---~~~--l~~~~~~~~~VvVIGgG~~g~E 508 (671)
T 1ps9_A 449 TAD--------------QLQAFDETILASGIVPRTPPID-GIDHPKVLSY---LDV--LRDKAPVGNKVAIIGCGGIGFD 508 (671)
T ss_dssp CSS--------------SSCCSSEEEECCCEEECCCCCB-TTTSTTEEEH---HHH--HTSCCCCCSEEEEECCHHHHHH
T ss_pred cHH--------------HhhcCCEEEEccCCCcCCCCCC-CCCCCcEeeH---HHH--hhCCCCCCCeEEEECCChhHHH
Confidence 322 13 8999999999999999999 876 56654 233 3333446899999999999999
Q ss_pred HHHHHhcCCC-------------------------------------eEEEEcCCCcCCcccccHHHHHHHHHHHHhCCc
Q psy2951 1220 AAAFCASKVK-------------------------------------SVTVVGRGAVPFQESLGKEVGERITKLFESKGV 1262 (1466)
Q Consensus 1220 ~a~~l~~~g~-------------------------------------~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv 1262 (1466)
+|..|++.|. +|+++.+.+..+...+++.....+.+.++++||
T Consensus 509 ~A~~l~~~G~~vtv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~l~~~l~~~~~~~~~~~l~~~GV 588 (671)
T 1ps9_A 509 TAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGV 588 (671)
T ss_dssp HHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCcccchhhhhhhhcccccccccccccccccccCCCCcEEEEEEecchhhccccccccHHHHHHHHHhcCC
Confidence 9999998773 567777777777667777778888899999999
Q ss_pred EEEcCceEEEEEecCCCcEEEEEcCCC--CeeecCEEEEeeccccCccccccCCceeeCCCeEEeCCCccccCCCEEEec
Q psy2951 1263 KFVMKANVSSFEKNEKNDVTAANLDNG--TTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGG 1340 (1466)
Q Consensus 1263 ~~~~~~~v~~i~~~~~g~~~~v~l~~g--~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~G 1340 (1466)
++++++++++++ +++ ..+. .+| +++++|.||+++|..|+++|++. + +. ..++||++|
T Consensus 589 ~v~~~~~v~~i~--~~~--v~~~-~~G~~~~i~~D~Vi~a~G~~p~~~l~~~--l--~~------------~g~~v~aiG 647 (671)
T 1ps9_A 589 KMIPGVSYQKID--DDG--LHVV-INGETQVLAVDNVVICAGQEPNRALAQP--L--ID------------SGKTVHLIG 647 (671)
T ss_dssp EEECSCEEEEEE--TTE--EEEE-ETTEEEEECCSEEEECCCEEECCTTHHH--H--HT------------TTCCEEECG
T ss_pred EEEeCcEEEEEe--CCe--EEEe-cCCeEEEEeCCEEEECCCccccHHHHHH--H--Hh------------cCCCEEEEC
Confidence 999999999998 332 1232 577 67999999999999999988764 1 11 236899999
Q ss_pred ccccCCCccCCCceeeeecHHHHHHHHHHHHHHh
Q psy2951 1341 DIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNM 1374 (1466)
Q Consensus 1341 D~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i 1374 (1466)
||+..... .+..|+.||..||.||
T Consensus 648 D~~~~~~~----------~~~~A~~~g~~aA~~i 671 (671)
T 1ps9_A 648 GCDVAMEL----------DARRAIAQGTRLALEI 671 (671)
T ss_dssp GGTCCSSC----------CHHHHHHHHHHHHHHC
T ss_pred CcCccCch----------hHHHHHHHHHHHHHhC
Confidence 99876432 2588999999999986
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=6.1e-23 Score=253.22 Aligned_cols=282 Identities=16% Similarity=0.132 Sum_probs=192.0
Q ss_pred CCeEEEEcCchHHHHHHHHHH-HcCCCccEEEEcCCCCCCCC-------CC--ccchh-c------------c-----cC
Q psy2951 595 KDTFIVVGGGPSGATCVETLR-QNGFTGKLYFITDENFLPYD-------RV--KLSKQ-L------------D-----IK 646 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~-~~g~~~~v~~~~~~~~~~~~-------~~--~~~~~-~------------~-----~~ 646 (1466)
.+||+|||||+||+++|..|+ +.|.+ |+++|+++.+++. .. ..... . . ..
T Consensus 8 ~~dVvIIGaG~aGl~aA~~L~~~~G~~--v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~ 85 (540)
T 3gwf_A 8 TVDAVVIGAGFGGIYAVHKLHHELGLT--TVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYIT 85 (540)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCC--EEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEE
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCC--EEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCC
Confidence 479999999999999999999 88986 8888886543311 00 00000 0 0 11
Q ss_pred cccccccCHhHhhhCCc--EEEEceEEEEeccccc----cEEEccCCCEEecCEEEEcCC--CCCCcCCCCCCCCc----
Q psy2951 647 ADSILLRTEEFYKDNDI--HVIKGKKIISDSELNE----KKIKLQDGTSIDFTKIYLATG--SSPRTISQADGVNK---- 714 (1466)
Q Consensus 647 ~~~~~~~~~~~~~~~gv--~~~~~~~v~~i~~~~~----~~v~~~~~~~~~~d~lviAtG--~~~~~~~~~~g~~~---- 714 (1466)
..++..++....++.++ +++++++|+.+ +... ..|++++|+++.||+||+||| +.|+.|++| |.+.
T Consensus 86 ~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i-~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ip-G~~~f~g~ 163 (540)
T 3gwf_A 86 QPEILEYLEDVVDRFDLRRHFKFGTEVTSA-LYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINFPNLP-GLDTFEGE 163 (540)
T ss_dssp HHHHHHHHHHHHHHTTCGGGEEESCCEEEE-EEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBCCCCCT-TGGGCCSE
T ss_pred HHHHHHHHHHHHHHcCCcceeEeccEEEEE-EEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCCCCCCC-CccccCCC
Confidence 23444555566777888 89999999888 4433 378888888999999999999 689999999 8761
Q ss_pred EEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccC----HHHHHHHH-------
Q psy2951 715 VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLG----KEVGERIT------- 783 (1466)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~----~~~~~~~~------- 783 (1466)
.++.... .......+|+|+|||+|.+|+|+|..|++.+.+||++.|.+..+.+..+ +...+.++
T Consensus 164 ~~~~~~~-----~~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~~~~~~ 238 (540)
T 3gwf_A 164 TIHTAAW-----PEGKSLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGNRPVNPEQIAEIKADYDRIW 238 (540)
T ss_dssp EEEGGGC-----CSSCCCTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCCCEEECCCCBCCHHHHHHHHHTHHHHH
T ss_pred EEEeecC-----CCccccccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCccCCCCHHHHHHHHhccHHHH
Confidence 2222111 1122346899999999999999999999999999999999874333222 22211111
Q ss_pred ------------------------------------------------------------------HH------------
Q psy2951 784 ------------------------------------------------------------------KL------------ 785 (1466)
Q Consensus 784 ------------------------------------------------------------------~~------------ 785 (1466)
+.
T Consensus 239 ~~~~~~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dp~~~~ 318 (540)
T 3gwf_A 239 ERAKNSAVAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFMFGTFGDIATDEAANEAAASFIRAKVAEIIEDPETAR 318 (540)
T ss_dssp HHHHTSSSCSSSCCCCCCGGGSCHHHHHHHHHHHHHHCCHHHHHHTSCSCTTTCHHHHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHhccccccccccchhhhhCCHHHHHHHHHHHHhcccchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 00
Q ss_pred ---------------------HHhcCcEEEc--cceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCccccccC
Q psy2951 786 ---------------------FESKGVKFVM--KANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGK 842 (1466)
Q Consensus 786 ---------------------l~~~gv~~~~--~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~ 842 (1466)
+.+.+|+++. ...|++|++. .|.++||+++++|+||+|||+++++.++...
T Consensus 319 ~l~P~~~g~kR~~~~~~y~~~l~~~nV~lv~~~~~~I~~it~~------gv~~~dG~~~~~DvIV~ATGf~~~~~~~~~~ 392 (540)
T 3gwf_A 319 KLMPKGLFAKRPLCDSGYYEVYNRPNVEAVAIKENPIREVTAK------GVVTEDGVLHELDVLVFATGFDAVDGNYRRI 392 (540)
T ss_dssp HHCCCSCCCSSCEEESSTGGGGGSTTEEEEETTTSCEEEECSS------EEEETTCCEEECSEEEECCCBSCSSHHHHTS
T ss_pred hCCCCCCCccccCCCccHHHHhcCCCEEEEeCCCCCccEEecC------eEEcCCCCEEECCEEEECCccCccccCcCcc
Confidence 1144788885 6788888832 5888999999999999999999987555433
Q ss_pred CceeeCCCcEEeCC--------C--CC-CCCCCeEEe-ccccccCCcccCCceeeeccHHHHHHHHHHHHHHhc
Q psy2951 843 GVELNGQKAVVVNE--------Y--LE-TNVPGVYAG-GDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMV 904 (1466)
Q Consensus 843 gl~~~~~G~i~vd~--------~--~~-t~~~~iya~-GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~ 904 (1466)
. +...+.+.+++ + +. .+.||+|.+ |..+.... ....+..|++.+++.|.
T Consensus 393 ~--i~g~~G~~l~~~w~~~~~~y~g~~v~gfPN~f~~~Gp~~~~~s-----------~~~~~e~q~~~i~~~i~ 453 (540)
T 3gwf_A 393 E--IRGRDGLHINDHWDGQPTSYLGVSTANFPNWFMVLGPNGPFTN-----------LPPSIETQVEWISDTIG 453 (540)
T ss_dssp E--EECGGGCBHHHHTSSSCCCBTTTBCTTCTTEEESSCSSCBCSC-----------HHHHHHHHHHHHHHHHH
T ss_pred e--EECCCCcCHHHhhccChhhccccccCCCCceEEEecCCCCCcc-----------HHHHHHHHHHHHHHHHH
Confidence 2 22222222221 1 22 358999999 76543111 22567888998888774
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-22 Score=250.66 Aligned_cols=282 Identities=16% Similarity=0.131 Sum_probs=191.6
Q ss_pred CCcEEEECCchHHHHHHHHHH-hcCCCCcEEEEcCCCCCCC-----CCCCC----c-hhhccC-----------------
Q psy2951 1066 KDTFIVVGGGPSGATCVETLR-QNGFTGKLYFITDENFLPY-----DRVKL----S-KQLDIK----------------- 1117 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~-~~g~~~~i~li~~~~~~~~-----~~~~l----~-~~~~~~----------------- 1117 (1466)
..+|+|||||+||+++|..|+ +.|. +|+|||+++..+. ..|.. . ..+...
T Consensus 8 ~~dVvIIGaG~aGl~aA~~L~~~~G~--~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~ 85 (540)
T 3gwf_A 8 TVDAVVIGAGFGGIYAVHKLHHELGL--TTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYIT 85 (540)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCC--CEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEE
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCC--CEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCC
Confidence 368999999999999999999 8888 9999999865431 00100 0 000000
Q ss_pred cccccccChhhhccCCc--EEEcCCeEEEeecCCCC----eEEecCCcEEecCeEEEecC--CCCCcCCCCCCCC---c-
Q psy2951 1118 ADSILLRTEEFYKDNDI--HVIKGKKIISDSELNEK----KIKLQDGTSIDFTKIYLATG--SSPRTISQADGVN---K- 1185 (1466)
Q Consensus 1118 ~~~~~~~~~~~~~~~~v--~~~~~~~v~~i~d~~~~----~v~~~~g~~~~yd~lvlAtG--~~~~~~~~~~g~~---~- 1185 (1466)
..++.....+..+++++ +++++++|+++ +.... +|++++|+++.||+||+||| +.|+.|++| |++ +
T Consensus 86 ~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i-~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ip-G~~~f~g~ 163 (540)
T 3gwf_A 86 QPEILEYLEDVVDRFDLRRHFKFGTEVTSA-LYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINFPNLP-GLDTFEGE 163 (540)
T ss_dssp HHHHHHHHHHHHHHTTCGGGEEESCCEEEE-EEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBCCCCCT-TGGGCCSE
T ss_pred HHHHHHHHHHHHHHcCCcceeEeccEEEEE-EEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCCCCCCC-CccccCCC
Confidence 01111111234555677 78899999999 76554 78888999999999999999 599999999 876 2
Q ss_pred EEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccc----cHHHHHHHH-------
Q psy2951 1186 VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESL----GKEVGERIT------- 1254 (1466)
Q Consensus 1186 v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~----~~~~~~~l~------- 1254 (1466)
+++.....+ .....+|+|+|||+|.+|+|+|..|++.+.+|+++.|.+..+.+.+ .+...+.+.
T Consensus 164 ~~~~~~~~~-----~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~~~~~~ 238 (540)
T 3gwf_A 164 TIHTAAWPE-----GKSLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGNRPVNPEQIAEIKADYDRIW 238 (540)
T ss_dssp EEEGGGCCS-----SCCCTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCCCEEECCCCBCCHHHHHHHHHTHHHHH
T ss_pred EEEeecCCC-----ccccccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCccCCCCHHHHHHHHhccHHHH
Confidence 222222222 1223589999999999999999999999999999999986422221 111111111
Q ss_pred ------------------------------------------------------------------HH------------
Q psy2951 1255 ------------------------------------------------------------------KL------------ 1256 (1466)
Q Consensus 1255 ------------------------------------------------------------------~~------------ 1256 (1466)
+.
T Consensus 239 ~~~~~~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dp~~~~ 318 (540)
T 3gwf_A 239 ERAKNSAVAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFMFGTFGDIATDEAANEAAASFIRAKVAEIIEDPETAR 318 (540)
T ss_dssp HHHHTSSSCSSSCCCCCCGGGSCHHHHHHHHHHHHHHCCHHHHHHTSCSCTTTCHHHHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHhccccccccccchhhhhCCHHHHHHHHHHHHhcccchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 11
Q ss_pred ---------------------HHhCCcEEEc--CceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccCccccccC
Q psy2951 1257 ---------------------FESKGVKFVM--KANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGK 1313 (1466)
Q Consensus 1257 ---------------------~~~~gv~~~~--~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~~~~~~~~ 1313 (1466)
+.+.+|+++. ...|++++ ++ +|.++||+++++|+||+|||+.+++.++..
T Consensus 319 ~l~P~~~g~kR~~~~~~y~~~l~~~nV~lv~~~~~~I~~it--~~----gv~~~dG~~~~~DvIV~ATGf~~~~~~~~~- 391 (540)
T 3gwf_A 319 KLMPKGLFAKRPLCDSGYYEVYNRPNVEAVAIKENPIREVT--AK----GVVTEDGVLHELDVLVFATGFDAVDGNYRR- 391 (540)
T ss_dssp HHCCCSCCCSSCEEESSTGGGGGSTTEEEEETTTSCEEEEC--SS----EEEETTCCEEECSEEEECCCBSCSSHHHHT-
T ss_pred hCCCCCCCccccCCCccHHHHhcCCCEEEEeCCCCCccEEe--cC----eEEcCCCCEEECCEEEECCccCccccCcCc-
Confidence 1145888885 77899997 33 388999999999999999999999866654
Q ss_pred CceeeCCCeEEeCCC----------ccc-cCCCEEEe-cccccCCCccCCCceeeeecHHHHHHHHHHHHHHhc
Q psy2951 1314 GVELNGQKAVVVNEY----------LET-NVPGVYAG-GDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMV 1375 (1466)
Q Consensus 1314 gl~~~~~G~i~vd~~----------~~t-~~~~v~a~-GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~ 1375 (1466)
+.+..++++.+++. +.+ ..||+|++ |..+...+. ...+..|++.+++.|.
T Consensus 392 -~~i~g~~G~~l~~~w~~~~~~y~g~~v~gfPN~f~~~Gp~~~~~s~-----------~~~~e~q~~~i~~~i~ 453 (540)
T 3gwf_A 392 -IEIRGRDGLHINDHWDGQPTSYLGVSTANFPNWFMVLGPNGPFTNL-----------PPSIETQVEWISDTIG 453 (540)
T ss_dssp -SEEECGGGCBHHHHTSSSCCCBTTTBCTTCTTEEESSCSSCBCSCH-----------HHHHHHHHHHHHHHHH
T ss_pred -ceEECCCCcCHHHhhccChhhccccccCCCCceEEEecCCCCCccH-----------HHHHHHHHHHHHHHHH
Confidence 33333334444422 223 38999999 765432111 1678889998887765
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=6.1e-22 Score=244.59 Aligned_cols=287 Identities=15% Similarity=0.116 Sum_probs=186.5
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCC---------CCCccchh------------------cccC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY---------DRVKLSKQ------------------LDIK 646 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~---------~~~~~~~~------------------~~~~ 646 (1466)
..++|+|||||+||+++|+.|++.|.+ |+++|+++.+++ ..+..... ....
T Consensus 8 ~~~dVvIIGaG~aGl~aA~~L~~~g~~--v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~ 85 (545)
T 3uox_A 8 PALDAVVIGAGVTGIYQAFLINQAGMK--VLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFAS 85 (545)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCC--EEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCB
T ss_pred CCCCEEEECccHHHHHHHHHHHhCCCC--EEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCC
Confidence 458999999999999999999999987 889998754321 11110000 0012
Q ss_pred cccccccCHhHhhhCCc--EEEEceEEEEeccccc----cEEEccCCCEEecCEEEEcCC--CCCCcCCCCCCCCc--EE
Q psy2951 647 ADSILLRTEEFYKDNDI--HVIKGKKIISDSELNE----KKIKLQDGTSIDFTKIYLATG--SSPRTISQADGVNK--VF 716 (1466)
Q Consensus 647 ~~~~~~~~~~~~~~~gv--~~~~~~~v~~i~~~~~----~~v~~~~~~~~~~d~lviAtG--~~~~~~~~~~g~~~--~~ 716 (1466)
..++..++....++.++ .++++++|+.+ +... ..|++++|+++.||+||+||| +.|+.|++| |.+. ..
T Consensus 86 ~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~-~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~p~ip-G~~~f~g~ 163 (545)
T 3uox_A 86 QPEMLRYVNRAADAMDVRKHYRFNTRVTAA-RYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRMPDIK-GIDSFKGE 163 (545)
T ss_dssp HHHHHHHHHHHHHHHTCGGGEECSCCEEEE-EEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC---CCCT-TGGGCCSE
T ss_pred HHHHHHHHHHHHHHcCCcCcEEECCEEEEE-EEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcCCCCC-CccccCCC
Confidence 33444555566667777 78889889888 4433 378888888999999999999 899999999 8762 11
Q ss_pred EecCHHHHHhhcc-------cCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccC----HHHHHHH---
Q psy2951 717 YLRTVEDANNIAP-------HITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLG----KEVGERI--- 782 (1466)
Q Consensus 717 ~~~~~~~~~~~~~-------~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~----~~~~~~~--- 782 (1466)
.+.+... ... ....+|+|+|||+|.+|+|+|..|++.+.+||++.|.+....+..+ +...+.+
T Consensus 164 ~~h~~~~---~~~~~~~~~~~~~~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~ 240 (545)
T 3uox_A 164 SFHSSRW---PTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNWCTPLGNSPMSKEKMDSLRNR 240 (545)
T ss_dssp EEEGGGC---CBCTTSCBSCCCCBTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCCCEECCCCBCCHHHHHHHHHT
T ss_pred eEEcccc---cccccccccccccCCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCccccCCcCCCCHHHHHHHHhh
Confidence 1111111 111 2235899999999999999999999999999999999864322221 1111111
Q ss_pred --------------------------------------------------------------------------------
Q psy2951 783 -------------------------------------------------------------------------------- 782 (1466)
Q Consensus 783 -------------------------------------------------------------------------------- 782 (1466)
T Consensus 241 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~ 320 (545)
T 3uox_A 241 YPTILEYVKSTDTAFPYHRDPRKGTDVSESERDAFFEELYRQPGYGIWLSGFRDLLLNKESNKFLADFVAKKIRQRVKDP 320 (545)
T ss_dssp HHHHHHHHTTSSSSSSCCCBSSCGGGSCHHHHHHHHHHHHHSSSTHHHHTSBTTTTTCHHHHHHHHHHHHHHHHHHCSCH
T ss_pred hHHHHHHHhhcccccccccccchhhhCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCH
Confidence
Q ss_pred ------------------------HHHHHhcCcEEEc--cceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCc
Q psy2951 783 ------------------------TKLFESKGVKFVM--KANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNT 836 (1466)
Q Consensus 783 ------------------------~~~l~~~gv~~~~--~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 836 (1466)
.+.|.+.+|+++. ...|++|++. .|.+++| ++++|.||+|||+.+++
T Consensus 321 ~~~~~l~P~~~~~g~kR~~~~~~y~~al~~~nV~lv~~~~~~I~~it~~------gv~~~dG-~~~~D~IV~ATGf~~~~ 393 (545)
T 3uox_A 321 VVAEKLIPKDHPFGAKRVPMETNYYETYNRDNVHLVDIREAPIQEVTPE------GIKTADA-AYDLDVIIYATGFDAVT 393 (545)
T ss_dssp HHHHHTSCSSSCTTSSCCCEESSHHHHTTSTTEEEEETTTSCEEEEETT------EEEESSC-EEECSEEEECCCCBSSS
T ss_pred HHHHhCCCCCCCCCCCccCCCccHHHHhcCCCEEEEecCCCCceEEccC------eEEeCCC-eeecCEEEECCcccccc
Confidence 1112223788875 6788888832 5788999 99999999999999876
Q ss_pred cccccCCceeeCCCcEEeCCC-----------CCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhc
Q psy2951 837 NYLDGKGVELNGQKAVVVNEY-----------LETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMV 904 (1466)
Q Consensus 837 ~~~~~~gl~~~~~G~i~vd~~-----------~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~ 904 (1466)
.++.. +.+...+...+++. +-.+.||+|.+.--..+.. .......+..|++.+++.|.
T Consensus 394 ~~~~~--~~i~g~~G~~l~~~w~~~~~~y~g~~~~gfPN~f~~~gp~~~~~--------~~s~~~~~e~~~~~i~~~i~ 462 (545)
T 3uox_A 394 GSLDR--IDIRGKDNVRLIDAWAEGPSTYLGLQARGFPNFFTLVGPHNGST--------FCNVGVCGGLQAEWVLRMIS 462 (545)
T ss_dssp CSCTT--SEEECGGGCBHHHHTTTSCCCBTTTBCTTCTTEEECSSGGGTGG--------GSCHHHHHHHHHHHHHHHHH
T ss_pred ccCCC--ceEECCCCccHHHhhccccceeeccccCCCCcEEEEeCCCCCCc--------cccHHHHHHHHHHHHHHHHH
Confidence 65543 33332222223211 1236899998842221100 00123567788999888774
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-21 Score=239.92 Aligned_cols=288 Identities=17% Similarity=0.183 Sum_probs=183.5
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCC---------CCCCCCchh-hc-----------------cCc
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP---------YDRVKLSKQ-LD-----------------IKA 1118 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~---------~~~~~l~~~-~~-----------------~~~ 1118 (1466)
..+|||||||+||+++|..|++.|. +|+|||+++.++ .-+...... +. ...
T Consensus 9 ~~dVvIIGaG~aGl~aA~~L~~~g~--~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~ 86 (545)
T 3uox_A 9 ALDAVVIGAGVTGIYQAFLINQAGM--KVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQ 86 (545)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHTTC--CEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBH
T ss_pred CCCEEEECccHHHHHHHHHHHhCCC--CEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCH
Confidence 4689999999999999999999998 899999986542 111000000 00 001
Q ss_pred ccccccChhhhccCCc--EEEcCCeEEEeecCCCC----eEEecCCcEEecCeEEEecC--CCCCcCCCCCCCC---c-E
Q psy2951 1119 DSILLRTEEFYKDNDI--HVIKGKKIISDSELNEK----KIKLQDGTSIDFTKIYLATG--SSPRTISQADGVN---K-V 1186 (1466)
Q Consensus 1119 ~~~~~~~~~~~~~~~v--~~~~~~~v~~i~d~~~~----~v~~~~g~~~~yd~lvlAtG--~~~~~~~~~~g~~---~-v 1186 (1466)
.++.....+..++.++ .++++++|+++ +.... .|++++|+++.||+||+||| +.|+.|++| |++ + .
T Consensus 87 ~ei~~yl~~~~~~~~l~~~i~~~~~V~~~-~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~p~ip-G~~~f~g~~ 164 (545)
T 3uox_A 87 PEMLRYVNRAADAMDVRKHYRFNTRVTAA-RYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRMPDIK-GIDSFKGES 164 (545)
T ss_dssp HHHHHHHHHHHHHHTCGGGEECSCCEEEE-EEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC---CCCT-TGGGCCSEE
T ss_pred HHHHHHHHHHHHHcCCcCcEEECCEEEEE-EEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcCCCCC-CccccCCCe
Confidence 1111111223444565 68889999999 75544 78888999999999999999 799999999 876 2 2
Q ss_pred EE-ecCHHHHHhhhc-ccCCCCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCccccc----HHHHH---------
Q psy2951 1187 FY-LRTVEDANNIAP-HITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLG----KEVGE--------- 1251 (1466)
Q Consensus 1187 ~~-~~~~~~~~~l~~-~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~----~~~~~--------- 1251 (1466)
++ .+...+.....+ ....+|+|+|||+|.+|+|+|..|++.+.+||++.|.+..+.+..+ +...+
T Consensus 165 ~h~~~~~~~~~~~~~~~~~~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~~p~~ 244 (545)
T 3uox_A 165 FHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNWCTPLGNSPMSKEKMDSLRNRYPTI 244 (545)
T ss_dssp EEGGGCCBCTTSCBSCCCCBTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCCCEECCCCBCCHHHHHHHHHTHHHH
T ss_pred EEcccccccccccccccccCCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCccccCCcCCCCHHHHHHHHhhhHHH
Confidence 22 211111000000 1224899999999999999999999999999999999864221111 11100
Q ss_pred ---------------------------------------------------------------HH---------------
Q psy2951 1252 ---------------------------------------------------------------RI--------------- 1253 (1466)
Q Consensus 1252 ---------------------------------------------------------------~l--------------- 1253 (1466)
.+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~ 324 (545)
T 3uox_A 245 LEYVKSTDTAFPYHRDPRKGTDVSESERDAFFEELYRQPGYGIWLSGFRDLLLNKESNKFLADFVAKKIRQRVKDPVVAE 324 (545)
T ss_dssp HHHHTTSSSSSSCCCBSSCGGGSCHHHHHHHHHHHHHSSSTHHHHTSBTTTTTCHHHHHHHHHHHHHHHHHHCSCHHHHH
T ss_pred HHHHhhcccccccccccchhhhCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 01
Q ss_pred --------------------HHHHHhCCcEEEc--CceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccCccccc
Q psy2951 1254 --------------------TKLFESKGVKFVM--KANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLD 1311 (1466)
Q Consensus 1254 --------------------~~~~~~~gv~~~~--~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~~~~~~ 1311 (1466)
.+.+.+.+|+++. ...|++++ ++ +|.++|| ++++|+||+|||+.+++.++.
T Consensus 325 ~l~P~~~~~g~kR~~~~~~y~~al~~~nV~lv~~~~~~I~~it--~~----gv~~~dG-~~~~D~IV~ATGf~~~~~~~~ 397 (545)
T 3uox_A 325 KLIPKDHPFGAKRVPMETNYYETYNRDNVHLVDIREAPIQEVT--PE----GIKTADA-AYDLDVIIYATGFDAVTGSLD 397 (545)
T ss_dssp HTSCSSSCTTSSCCCEESSHHHHTTSTTEEEEETTTSCEEEEE--TT----EEEESSC-EEECSEEEECCCCBSSSCSCT
T ss_pred hCCCCCCCCCCCccCCCccHHHHhcCCCEEEEecCCCCceEEc--cC----eEEeCCC-eeecCEEEECCccccccccCC
Confidence 1112233788885 78899998 33 3889999 999999999999999877664
Q ss_pred cCCceeeCCCeEEeCCC----------cc-ccCCCEEEecccccCCCccCCCceeeeec-HHHHHHHHHHHHHHhc
Q psy2951 1312 GKGVELNGQKAVVVNEY----------LE-TNVPGVYAGGDIAYAPLHSFYNKNASIGH-YQLAQYHGRIAALNMV 1375 (1466)
Q Consensus 1312 ~~gl~~~~~G~i~vd~~----------~~-t~~~~v~a~GD~a~~p~~~~~~~~~~~~~-~~~A~~qa~~aa~~i~ 1375 (1466)
. +.+.++++..+++. +. ...||+|.+.- |+... -..+ -..+..|++.+++.|.
T Consensus 398 ~--~~i~g~~G~~l~~~w~~~~~~y~g~~~~gfPN~f~~~g----p~~~~-----~~~s~~~~~e~~~~~i~~~i~ 462 (545)
T 3uox_A 398 R--IDIRGKDNVRLIDAWAEGPSTYLGLQARGFPNFFTLVG----PHNGS-----TFCNVGVCGGLQAEWVLRMIS 462 (545)
T ss_dssp T--SEEECGGGCBHHHHTTTSCCCBTTTBCTTCTTEEECSS----GGGTG-----GGSCHHHHHHHHHHHHHHHHH
T ss_pred C--ceEECCCCccHHHhhccccceeeccccCCCCcEEEEeC----CCCCC-----ccccHHHHHHHHHHHHHHHHH
Confidence 3 44444444555422 11 23799998842 21100 0011 1567888888888765
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.6e-21 Score=237.97 Aligned_cols=168 Identities=18% Similarity=0.231 Sum_probs=123.4
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCC---------CCCccchh-----c-------------ccC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY---------DRVKLSKQ-----L-------------DIK 646 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~---------~~~~~~~~-----~-------------~~~ 646 (1466)
..++|+|||||+||+++|..|++.|.+ |+++|+++.+++ ..+..... + ...
T Consensus 20 ~~~dVvIIGaG~aGl~aA~~L~~~G~~--v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~ 97 (549)
T 4ap3_A 20 TSYDVVVVGAGIAGLYAIHRFRSQGLT--VRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYAT 97 (549)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCC--EEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCB
T ss_pred CCCCEEEECchHHHHHHHHHHHhCCCC--EEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCC
Confidence 457999999999999999999999986 888998654331 10000000 0 012
Q ss_pred cccccccCHhHhhhCCc--EEEEceEEEEeccccc----cEEEccCCCEEecCEEEEcCC--CCCCcCCCCCCCCc----
Q psy2951 647 ADSILLRTEEFYKDNDI--HVIKGKKIISDSELNE----KKIKLQDGTSIDFTKIYLATG--SSPRTISQADGVNK---- 714 (1466)
Q Consensus 647 ~~~~~~~~~~~~~~~gv--~~~~~~~v~~i~~~~~----~~v~~~~~~~~~~d~lviAtG--~~~~~~~~~~g~~~---- 714 (1466)
..++..++....++.++ +++++++|+.+ +... ..|++++|.++.||+||+||| +.|..|++| |.+.
T Consensus 98 ~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i-~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ip-G~~~f~g~ 175 (549)
T 4ap3_A 98 QPEILAYLEHVADRFDLRRDIRFDTRVTSA-VLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANTPAFD-GLDRFTGD 175 (549)
T ss_dssp HHHHHHHHHHHHHHTTCGGGEECSCCEEEE-EEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCCCCCT-TGGGCCSE
T ss_pred HHHHHHHHHHHHHHcCCCccEEECCEEEEE-EEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCCCCCC-CcccCCCc
Confidence 33445555666777887 78999889888 4443 378888898999999999999 899999999 8761
Q ss_pred EEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCcc
Q psy2951 715 VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP 769 (1466)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~ 769 (1466)
.++...... ......+|+|+|||+|.+|+|+|..|++.+.+||++.|.+..
T Consensus 176 ~~~~~~~~~----~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~ 226 (549)
T 4ap3_A 176 IVHTARWPH----DGVDFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANY 226 (549)
T ss_dssp EEEGGGCCT----TCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCC
T ss_pred eEEeccccc----cccccCCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCCc
Confidence 222211110 011225899999999999999999999999999999999864
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.9e-21 Score=237.57 Aligned_cols=166 Identities=19% Similarity=0.267 Sum_probs=120.5
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCC----CC-CC----C-chhhcc-----------------Cc
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY----DR-VK----L-SKQLDI-----------------KA 1118 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~----~~-~~----l-~~~~~~-----------------~~ 1118 (1466)
..+|||||||+||+++|..|++.|+ +|+|||+++.++. .+ |. . +..+.. ..
T Consensus 21 ~~dVvIIGaG~aGl~aA~~L~~~G~--~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~ 98 (549)
T 4ap3_A 21 SYDVVVVGAGIAGLYAIHRFRSQGL--TVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQ 98 (549)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTC--CEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBH
T ss_pred CCCEEEECchHHHHHHHHHHHhCCC--CEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCH
Confidence 4689999999999999999999998 9999999764330 00 00 0 000000 01
Q ss_pred ccccccChhhhccCCc--EEEcCCeEEEeecCCCC----eEEecCCcEEecCeEEEecC--CCCCcCCCCCCCC---c-E
Q psy2951 1119 DSILLRTEEFYKDNDI--HVIKGKKIISDSELNEK----KIKLQDGTSIDFTKIYLATG--SSPRTISQADGVN---K-V 1186 (1466)
Q Consensus 1119 ~~~~~~~~~~~~~~~v--~~~~~~~v~~i~d~~~~----~v~~~~g~~~~yd~lvlAtG--~~~~~~~~~~g~~---~-v 1186 (1466)
.++.....+..++.++ +++++++|+++ +...+ +|++++|.++.||+||+||| +.|+.|++| |++ + +
T Consensus 99 ~ei~~yl~~~~~~~g~~~~i~~~~~V~~i-~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ip-G~~~f~g~~ 176 (549)
T 4ap3_A 99 PEILAYLEHVADRFDLRRDIRFDTRVTSA-VLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANTPAFD-GLDRFTGDI 176 (549)
T ss_dssp HHHHHHHHHHHHHTTCGGGEECSCCEEEE-EEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCCCCCT-TGGGCCSEE
T ss_pred HHHHHHHHHHHHHcCCCccEEECCEEEEE-EEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCCCCCC-CcccCCCce
Confidence 1111111234555676 78999999999 76554 78889999999999999999 799999999 876 2 2
Q ss_pred EEecCHH-HHHhhhcccCCCCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcC
Q psy2951 1187 FYLRTVE-DANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP 1240 (1466)
Q Consensus 1187 ~~~~~~~-~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~ 1240 (1466)
++...+. +...+ .+|+|+|||+|.+|+|+|..|++.+.+|+++.|.+..
T Consensus 177 ~~~~~~~~~~~~~-----~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~ 226 (549)
T 4ap3_A 177 VHTARWPHDGVDF-----TGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANY 226 (549)
T ss_dssp EEGGGCCTTCCCC-----BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCC
T ss_pred EEecccccccccc-----CCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCCc
Confidence 3322222 22111 4899999999999999999999999999999998863
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=9.8e-21 Score=235.74 Aligned_cols=292 Identities=18% Similarity=0.191 Sum_probs=189.9
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCC-------CCCCCC-----------chhh--ccCccc-----
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP-------YDRVKL-----------SKQL--DIKADS----- 1120 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~-------~~~~~l-----------~~~~--~~~~~~----- 1120 (1466)
..+|+|||||++|+++|..|++.|+ +|+|||+++..+ |....+ .... ......
T Consensus 16 ~~dVvIIGaG~aGl~aA~~L~~~G~--~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~~ 93 (542)
T 1w4x_A 16 EVDVLVVGAGFSGLYALYRLRELGR--SVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQ 93 (542)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTC--CEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBH
T ss_pred CCCEEEECccHHHHHHHHHHHhCCC--CEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCCH
Confidence 4689999999999999999999998 999999987542 110000 0000 000000
Q ss_pred --ccccChhhhccCC--cEEEcCCeEEEeecCCC----CeEEecCCcEEecCeEEEecC--CCCCcCCCCCCCC---c--
Q psy2951 1121 --ILLRTEEFYKDND--IHVIKGKKIISDSELNE----KKIKLQDGTSIDFTKIYLATG--SSPRTISQADGVN---K-- 1185 (1466)
Q Consensus 1121 --~~~~~~~~~~~~~--v~~~~~~~v~~i~d~~~----~~v~~~~g~~~~yd~lvlAtG--~~~~~~~~~~g~~---~-- 1185 (1466)
+........++.+ ++++++++|+++ +... .+|++++|.++.+|+||+||| +.|+.|++| |++ +
T Consensus 94 ~~i~~yl~~~~~~~~l~~~i~~~~~V~~~-~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s~p~~p~i~-G~~~f~G~~ 171 (542)
T 1w4x_A 94 PEILRYINFVADKFDLRSGITFHTTVTAA-AFDEATNTWTVDTNHGDRIRARYLIMASGQLSVPQLPNFP-GLKDFAGNL 171 (542)
T ss_dssp HHHHHHHHHHHHHTTGGGGEECSCCEEEE-EEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCCCCCCT-TGGGCCSEE
T ss_pred HHHHHHHHHHHHHcCCCceEEcCcEEEEE-EEcCCCCeEEEEECCCCEEEeCEEEECcCCCCCCCCCCCC-CcccCCCce
Confidence 0000011223333 578899999998 6432 368888898999999999999 478888888 876 3
Q ss_pred EEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCC-cc---cccHHH------------
Q psy2951 1186 VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF-QE---SLGKEV------------ 1249 (1466)
Q Consensus 1186 v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~-~~---~~~~~~------------ 1249 (1466)
+|+.+...+. ....+|+|+|||+|.+|+|++..+++.+.+|+++.|.+... ++ .+.++.
T Consensus 172 ~hs~~~~~~~-----~~~~gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~~~~p~~~~~~~~~~~~~~~~~~p~l~ 246 (542)
T 1w4x_A 172 YHTGNWPHEP-----VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPARNAPLDPEFLADLKKRYAEFR 246 (542)
T ss_dssp EEGGGCCSSC-----CCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECCCCBCCHHHHHHHHTTHHHHH
T ss_pred EECCCCCCch-----hccCCCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCcccccCCCCCCCHHHHHHHHhhCHHHH
Confidence 2222111011 11248999999999999999999999999999999886441 10 011100
Q ss_pred -----------------------------------------------------------HHHHHHHH-------------
Q psy2951 1250 -----------------------------------------------------------GERITKLF------------- 1257 (1466)
Q Consensus 1250 -----------------------------------------------------------~~~l~~~~------------- 1257 (1466)
.+.+.+.+
T Consensus 247 ~~~~~~~~G~~~~~d~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 326 (542)
T 1w4x_A 247 EESRNTPGGTHRYQGPKSALEVSDEELVETLERYWQEGGPDILAAYRDILRDRDANERVAEFIRNKIRNTVRDPEVAERL 326 (542)
T ss_dssp HHHHTSSSSSCCCCCCSCTTTSCHHHHHHHHHHHHHHCSGGGGGSSTTTTTCHHHHHHHHHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHhhccccccCccccchhcCCHHHHHHHHHHHHhhcchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHcCCHHHHHhc
Confidence 11111111
Q ss_pred ----------------------HhCCcEEE--cCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccCccccccC
Q psy2951 1258 ----------------------ESKGVKFV--MKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGK 1313 (1466)
Q Consensus 1258 ----------------------~~~gv~~~--~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~~~~~~~~ 1313 (1466)
.+.+|+++ .+..|++++ ++ +|.++| +++++|.||+|||+.++++++..
T Consensus 327 ~P~~~~~~~kr~~~~~~y~~~~~~~~v~lv~~~~~~i~~i~--~~----gv~~~d-~~~~~D~ii~atG~~~~~~~~~~- 398 (542)
T 1w4x_A 327 VPKGYPFGTKRLILEIDYYEMFNRDNVHLVDTLSAPIETIT--PR----GVRTSE-REYELDSLVLATGFDALTGALFK- 398 (542)
T ss_dssp SCCSSCSSSSCCEEESSHHHHTTSTTEEEEETTTSCEEEEC--SS----EEEESS-CEEECSEEEECCCCCCTTHHHHT-
T ss_pred CCCCCCccccCCCCCccHHHHhCCCCEEEEecCCCCceEEc--CC----eEEeCC-eEEecCEEEEcCCccccccCcCc-
Confidence 11346666 366788886 33 388899 89999999999999998887765
Q ss_pred CceeeCCCeEEeCCCccccCCCEEEecccccCCCccCC-Cce--eeeecH-HHHHHHHHHHHHHhcC
Q psy2951 1314 GVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFY-NKN--ASIGHY-QLAQYHGRIAALNMVE 1376 (1466)
Q Consensus 1314 gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~-~~~--~~~~~~-~~A~~qa~~aa~~i~g 1376 (1466)
+.+..++++.+++.++ +.|.+|..++++.+|+.... |.. ....+| ..|..|++.+|++|..
T Consensus 399 -~~i~g~~G~~l~~~w~-~~~~~y~~~~v~~~Pn~f~~~G~~~~~~~~~~~~~~e~q~~~ia~~i~~ 463 (542)
T 1w4x_A 399 -IDIRGVGNVALKEKWA-AGPRTYLGLSTAGFPNLFFIAGPGSPSALSNMLVSIEQHVEWVTDHIAY 463 (542)
T ss_dssp -SEEECGGGCBHHHHTT-TSCCCBTTTBCTTSTTEEESSCTTSSGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred -eeeECCCCCCHHHhhc-CchheecccccCCCCceEEEcCCCCCcccccHHHHHHHHHHHHHHHHHH
Confidence 4433344466665544 34556666666666553211 222 235667 7889999999999874
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.9e-20 Score=231.54 Aligned_cols=285 Identities=16% Similarity=0.171 Sum_probs=183.6
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCC-------C--CCcc-------c--hh----cc-----cC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY-------D--RVKL-------S--KQ----LD-----IK 646 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~-------~--~~~~-------~--~~----~~-----~~ 646 (1466)
..+||+|||||+||+++|..|+++|.+ |+++|+++.+++ . .+.. . .. +. ..
T Consensus 15 ~~~dVvIIGaG~aGl~aA~~L~~~G~~--v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~ 92 (542)
T 1w4x_A 15 EEVDVLVVGAGFSGLYALYRLRELGRS--VHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYAS 92 (542)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHTTCC--EEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCB
T ss_pred CCCCEEEECccHHHHHHHHHHHhCCCC--EEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCC
Confidence 357999999999999999999999986 888888754321 1 0000 0 00 00 11
Q ss_pred cccccccCHhHhhhCC--cEEEEceEEEEecccc----ccEEEccCCCEEecCEEEEcCC--CCCCcCCCCCCCC---c-
Q psy2951 647 ADSILLRTEEFYKDND--IHVIKGKKIISDSELN----EKKIKLQDGTSIDFTKIYLATG--SSPRTISQADGVN---K- 714 (1466)
Q Consensus 647 ~~~~~~~~~~~~~~~g--v~~~~~~~v~~i~~~~----~~~v~~~~~~~~~~d~lviAtG--~~~~~~~~~~g~~---~- 714 (1466)
..++..++....++.+ ++++++++|..+ +.+ ...|++++|+++.||+||+||| +.|+.|+++ |.+ +
T Consensus 93 ~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~-~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s~p~~p~i~-G~~~f~G~ 170 (542)
T 1w4x_A 93 QPEILRYINFVADKFDLRSGITFHTTVTAA-AFDEATNTWTVDTNHGDRIRARYLIMASGQLSVPQLPNFP-GLKDFAGN 170 (542)
T ss_dssp HHHHHHHHHHHHHHTTGGGGEECSCCEEEE-EEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCCCCCCT-TGGGCCSE
T ss_pred HHHHHHHHHHHHHHcCCCceEEcCcEEEEE-EEcCCCCeEEEEECCCCEEEeCEEEECcCCCCCCCCCCCC-CcccCCCc
Confidence 1223333334445554 578889989887 332 3578888888999999999999 678889998 875 2
Q ss_pred EEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccc----cCHHHH-----------
Q psy2951 715 VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQES----LGKEVG----------- 779 (1466)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~----~~~~~~----------- 779 (1466)
.++...... ......+|+|+|||+|.+|+|++..|++.+.+|+++.|.+....+. +..+..
T Consensus 171 ~~hs~~~~~----~~~~~~gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~~~~p~~~~~~~~~~~~~~~~~~p~l~ 246 (542)
T 1w4x_A 171 LYHTGNWPH----EPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPARNAPLDPEFLADLKKRYAEFR 246 (542)
T ss_dssp EEEGGGCCS----SCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECCCCBCCHHHHHHHHTTHHHHH
T ss_pred eEECCCCCC----chhccCCCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCcccccCCCCCCCHHHHHHHHhhCHHHH
Confidence 222111100 0112358999999999999999999999999999999987542111 111110
Q ss_pred ------------------------------------------------------------HHHHHHH-------------
Q psy2951 780 ------------------------------------------------------------ERITKLF------------- 786 (1466)
Q Consensus 780 ------------------------------------------------------------~~~~~~l------------- 786 (1466)
+.+.+.+
T Consensus 247 ~~~~~~~~G~~~~~d~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 326 (542)
T 1w4x_A 247 EESRNTPGGTHRYQGPKSALEVSDEELVETLERYWQEGGPDILAAYRDILRDRDANERVAEFIRNKIRNTVRDPEVAERL 326 (542)
T ss_dssp HHHHTSSSSSCCCCCCSCTTTSCHHHHHHHHHHHHHHCSGGGGGSSTTTTTCHHHHHHHHHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHhhccccccCccccchhcCCHHHHHHHHHHHHhhcchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHcCCHHHHHhc
Confidence 0111111
Q ss_pred ----------------------HhcCcEEE--ccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCccccccC
Q psy2951 787 ----------------------ESKGVKFV--MKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGK 842 (1466)
Q Consensus 787 ----------------------~~~gv~~~--~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~ 842 (1466)
.+.+|+++ .+..|++|++. .|.++| +++++|+||+|||+++++.++...
T Consensus 327 ~P~~~~~~~kr~~~~~~y~~~~~~~~v~lv~~~~~~i~~i~~~------gv~~~d-~~~~~D~ii~atG~~~~~~~~~~~ 399 (542)
T 1w4x_A 327 VPKGYPFGTKRLILEIDYYEMFNRDNVHLVDTLSAPIETITPR------GVRTSE-REYELDSLVLATGFDALTGALFKI 399 (542)
T ss_dssp SCCSSCSSSSCCEEESSHHHHTTSTTEEEEETTTSCEEEECSS------EEEESS-CEEECSEEEECCCCCCTTHHHHTS
T ss_pred CCCCCCccccCCCCCccHHHHhCCCCEEEEecCCCCceEEcCC------eEEeCC-eEEecCEEEEcCCccccccCcCce
Confidence 11346665 35678888732 577888 899999999999999987776643
Q ss_pred CceeeCCCcEEeCCCC----------C-CCCCCeEEe-ccccccCCcccCCceeeeccH-HHHHHHHHHHHHHhcc
Q psy2951 843 GVELNGQKAVVVNEYL----------E-TNVPGVYAG-GDIAYAPLHSFYNKNASIGHY-QLAQYHGRIAALNMVE 905 (1466)
Q Consensus 843 gl~~~~~G~i~vd~~~----------~-t~~~~iya~-GD~~~~~~~~~~~~~~~~~~~-~~A~~~g~~aA~~i~~ 905 (1466)
++. ..+|.. +++.+ . ...||+|++ |+.+... .+++ ..|..|++.+|++|..
T Consensus 400 ~i~-g~~G~~-l~~~w~~~~~~y~~~~v~~~Pn~f~~~G~~~~~~----------~~~~~~~~e~q~~~ia~~i~~ 463 (542)
T 1w4x_A 400 DIR-GVGNVA-LKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPSA----------LSNMLVSIEQHVEWVTDHIAY 463 (542)
T ss_dssp EEE-CGGGCB-HHHHTTTSCCCBTTTBCTTSTTEEESSCTTSSGG----------GSCHHHHHHHHHHHHHHHHHH
T ss_pred eeE-CCCCCC-HHHhhcCchheecccccCCCCceEEEcCCCCCcc----------cccHHHHHHHHHHHHHHHHHH
Confidence 322 223433 33221 1 246777776 7654211 1233 6899999999999863
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-18 Score=183.64 Aligned_cols=154 Identities=19% Similarity=0.185 Sum_probs=132.2
Q ss_pred eEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcc-------------cccHHHHHHHHHHHHhCCcEEEcCceEEEE
Q psy2951 1207 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQE-------------SLGKEVGERITKLFESKGVKFVMKANVSSF 1273 (1466)
Q Consensus 1207 ~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~-------------~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i 1273 (1466)
+|+|||+|++|+++|..|++.|.+|+++++.+..+.+ ..++++.+.+.+.+++.||+++.+ +|+++
T Consensus 3 ~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~v~~~-~v~~i 81 (180)
T 2ywl_A 3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEVRPG-VVKGV 81 (180)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHHTTCEEEEC-CCCEE
T ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHHcCCEEEeC-EEEEE
Confidence 6999999999999999999999999999998755521 124788899999999999999999 99999
Q ss_pred EecCCCcEEEEEcCCCCeeecCEEEEeeccccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCc
Q psy2951 1274 EKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNK 1353 (1466)
Q Consensus 1274 ~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~ 1353 (1466)
+. +++. ..+.+++| ++++|.||+|+|..|+ +++..|++++ +|.+.||++++|+.|+|||+|||+..+..
T Consensus 82 ~~-~~~~-~~v~~~~g-~i~ad~vI~A~G~~~~--~~~~~g~~~~-~g~i~vd~~~~t~~~~i~a~GD~~~~~~~----- 150 (180)
T 2ywl_A 82 RD-MGGV-FEVETEEG-VEKAERLLLCTHKDPT--LPSLLGLTRR-GAYIDTDEGGRTSYPRVYAAGVARGKVPG----- 150 (180)
T ss_dssp EE-CSSS-EEEECSSC-EEEEEEEEECCTTCCH--HHHHHTCCEE-TTEECCCTTCBCSSTTEEECGGGGTCCSC-----
T ss_pred EE-cCCE-EEEEECCC-EEEECEEEECCCCCCC--ccccCCCCcc-CceEEeCCCCCcCCCCEEEeecccCcchh-----
Confidence 83 3323 46888888 8999999999999985 4567788888 88899999999999999999999987642
Q ss_pred eeeeecHHHHHHHHHHHHHHhcCC
Q psy2951 1354 NASIGHYQLAQYHGRIAALNMVEK 1377 (1466)
Q Consensus 1354 ~~~~~~~~~A~~qa~~aa~~i~g~ 1377 (1466)
+|..|..||+.||.||++.
T Consensus 151 -----~~~~A~~~g~~aa~~i~~~ 169 (180)
T 2ywl_A 151 -----HAIISAGDGAYVAVHLVSD 169 (180)
T ss_dssp -----CHHHHHHHHHHHHHHHHHH
T ss_pred -----hHHHHHHhHHHHHHHHHHH
Confidence 4589999999999999973
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-18 Score=182.24 Aligned_cols=154 Identities=20% Similarity=0.195 Sum_probs=131.5
Q ss_pred cEEEECCChHHHHHHHHHhccCCeEEEEeecCccCcc--------cc-----CHHHHHHHHHHHHhcCcEEEccceEEEE
Q psy2951 736 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQE--------SL-----GKEVGERITKLFESKGVKFVMKANVSSF 802 (1466)
Q Consensus 736 ~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~--------~~-----~~~~~~~~~~~l~~~gv~~~~~~~v~~i 802 (1466)
+|+|||+|++|+++|..|++.|.+|+++++.+..+.. .+ ++++.+.+.+.+++.||+++.+ +++++
T Consensus 3 ~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~v~~~-~v~~i 81 (180)
T 2ywl_A 3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEVRPG-VVKGV 81 (180)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHHTTCEEEEC-CCCEE
T ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHHcCCEEEeC-EEEEE
Confidence 6899999999999999999999999999998754421 12 4788888999999999999999 99999
Q ss_pred EecCCCceEEEECCCCcEEecCEEEEccccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCc
Q psy2951 803 EKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNK 882 (1466)
Q Consensus 803 ~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~ 882 (1466)
+..++ . ..+.+++| ++++|.||+|+|..|+ +++.+|++++ +|++.+|++++|+.|+|||+|||+..+..
T Consensus 82 ~~~~~-~-~~v~~~~g-~i~ad~vI~A~G~~~~--~~~~~g~~~~-~g~i~vd~~~~t~~~~i~a~GD~~~~~~~----- 150 (180)
T 2ywl_A 82 RDMGG-V-FEVETEEG-VEKAERLLLCTHKDPT--LPSLLGLTRR-GAYIDTDEGGRTSYPRVYAAGVARGKVPG----- 150 (180)
T ss_dssp EECSS-S-EEEECSSC-EEEEEEEEECCTTCCH--HHHHHTCCEE-TTEECCCTTCBCSSTTEEECGGGGTCCSC-----
T ss_pred EEcCC-E-EEEEECCC-EEEECEEEECCCCCCC--ccccCCCCcc-CceEEeCCCCCcCCCCEEEeecccCcchh-----
Confidence 85433 2 46788888 8999999999999985 4567788888 89999999999999999999999987541
Q ss_pred eeeeccHHHHHHHHHHHHHHhccC
Q psy2951 883 NASIGHYQLAQYHGRIAALNMVEK 906 (1466)
Q Consensus 883 ~~~~~~~~~A~~~g~~aA~~i~~~ 906 (1466)
++..|..||+.||.||.+.
T Consensus 151 -----~~~~A~~~g~~aa~~i~~~ 169 (180)
T 2ywl_A 151 -----HAIISAGDGAYVAVHLVSD 169 (180)
T ss_dssp -----CHHHHHHHHHHHHHHHHHH
T ss_pred -----hHHHHHHhHHHHHHHHHHH
Confidence 4578999999999999864
|
| >4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=8e-16 Score=188.83 Aligned_cols=282 Identities=13% Similarity=0.099 Sum_probs=169.6
Q ss_pred cCCCCCCeEEEEcCchHHHHHHHHHHHcCCC------------ccEEEEcCCCCCCCCC--------Cccch--h-----
Q psy2951 590 LSSGNKDTFIVVGGGPSGATCVETLRQNGFT------------GKLYFITDENFLPYDR--------VKLSK--Q----- 642 (1466)
Q Consensus 590 ~~~~~~~~vvVIGgG~AGl~aA~~l~~~g~~------------~~v~~~~~~~~~~~~~--------~~~~~--~----- 642 (1466)
.+....+||||||+||+||++|..|.+.|.. .....+|+.+.+.++. +..+. .
T Consensus 34 tp~~~i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~Wh~g~~~p~~~~q~~fl~Dlvtl~ 113 (501)
T 4b63_A 34 TPQDELHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFAWHSGMLVPGSKMQISFIKDLATLR 113 (501)
T ss_dssp CCTTSCEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCCSSGGGCCTTCBCSSCGGGSSSTTT
T ss_pred CCCCCcCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCCcCCCCCCCCccccccchhhhcccc
Confidence 3445568999999999999999999987543 2345566654333211 11100 0
Q ss_pred --------------------------cccCcccccccCHhHhhhCCcEEEEceEEEEeccc---------cccEEEccCC
Q psy2951 643 --------------------------LDIKADSILLRTEEFYKDNDIHVIKGKKIISDSEL---------NEKKIKLQDG 687 (1466)
Q Consensus 643 --------------------------~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~---------~~~~v~~~~~ 687 (1466)
+.....++..++....++.+..++++++|+++... ..++|++.++
T Consensus 114 ~P~s~~sf~~yl~~~~rl~~f~~~~~~~p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~ 193 (501)
T 4b63_A 114 DPRSSFTFLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNV 193 (501)
T ss_dssp CTTCTTSHHHHHHHHTCHHHHHTTCCSCCBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEET
T ss_pred CCCCccchHHHHHHhCCccCCccccCCCCCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecC
Confidence 00122344445555555667789999999888311 1256666543
Q ss_pred -----CEEecCEEEEcCCCCCCcCCCCCCCCcEEEecCHHHH-HhhcccCCCCCcEEEECCChHHHHHHHHHhcc--CCe
Q psy2951 688 -----TSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDA-NNIAPHITPESNVVVIGSSFIGMEAAAFCASK--VKS 759 (1466)
Q Consensus 688 -----~~~~~d~lviAtG~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~--g~~ 759 (1466)
.++.+++||+|||..|..|...+....+++.....+. ..+.....++|+|+|||+|.+|+|++..|++. +.+
T Consensus 194 ~~g~~~~~~ar~vVlatG~~P~iP~~~~~~g~v~Hss~y~~~~~~~~~~~~~gKrV~VVG~G~SA~ei~~~L~~~~~~~~ 273 (501)
T 4b63_A 194 ETGEISARRTRKVVIAIGGTAKMPSGLPQDPRIIHSSKYCTTLPALLKDKSKPYNIAVLGSGQSAAEIFHDLQKRYPNSR 273 (501)
T ss_dssp TTCCEEEEEEEEEEECCCCEECCCTTSCCCTTEEEGGGHHHHHHHHSCCTTSCCEEEEECCSHHHHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEeCEEEECcCCCCCCCCCCCCCcceeeccccccchhhccccccCCcEEEEECCcHHHHHHHHHHHhcCCCce
Confidence 3688999999999988888766232256655554432 22333334699999999999999999999875 789
Q ss_pred EEEEeecCccCcc--------ccCHH-----------H--------------------HHHHHHHHHh----------cC
Q psy2951 760 VTVVGRGAVPFQE--------SLGKE-----------V--------------------GERITKLFES----------KG 790 (1466)
Q Consensus 760 V~lv~~~~~~~~~--------~~~~~-----------~--------------------~~~~~~~l~~----------~g 790 (1466)
|+++.|++..... .+.++ . ...+.+.+-+ ..
T Consensus 274 v~~~~R~~~~~p~~~s~~~~~~f~p~~~~~f~~l~~~~r~~~~~~~~~~~~~~v~~~li~~i~~~~y~~~~~~~~~~~~~ 353 (501)
T 4b63_A 274 TTLIMRDSAMRPSDDSPFVNEIFNPERVDKFYSQSAAERQRSLLADKATNYSVVRLELIEEIYNDMYLQRVKNPDETQWQ 353 (501)
T ss_dssp EEEECSSSSCCBCCCCTTGGGGGSTTHHHHHHTSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCSCGGGCS
T ss_pred EEEEeCCCccccccccccchhhcCHHHHHHHHhCCHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhccCCCcccccc
Confidence 9999998643211 11111 1 1111111111 12
Q ss_pred cEEEccceEEEEEecCCC-ce-----------EEEECCCCcEEecCEEEEccccccCcc--ccccC-CceeeCCCcEEeC
Q psy2951 791 VKFVMKANVSSFEKNEKN-DV-----------TAANLDNGTTIPADLVIVGIGTVLNTN--YLDGK-GVELNGQKAVVVN 855 (1466)
Q Consensus 791 v~~~~~~~v~~i~~~~~~-~~-----------~~v~~~~g~~i~~D~vi~a~G~~p~~~--~~~~~-gl~~~~~G~i~vd 855 (1466)
..+..+..+..+...... .+ ..+.+.+|+++++|.||+|||++++.. |+... .+..+.+|...++
T Consensus 354 ~~l~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~v~~~dg~~~~~D~VI~ATGy~~~~p~~L~~~~~~l~~d~~g~~~v~ 433 (501)
T 4b63_A 354 HRILPERKITRVEHHGPQSRMRIHLKSSKPESEGAANDVKETLEVDALMVATGYNRNAHERLLSKVQHLRPTGQDQWKPH 433 (501)
T ss_dssp SEEECSEEEEEEECCSSSSCEEEEEEESCC--------CCCEEEESEEEECCCEECCTHHHHTGGGGGGSSTTCCSCCBC
T ss_pred eeecCCcceeeeeecCCCCeEEEEeeeeEEeCCeeEeCCCeEEECCEEEECcCCCCCCcchhcchhhhcCcCcCCCeeeC
Confidence 345566666666532221 11 134567889999999999999998853 22211 2445666777777
Q ss_pred CCCCC--------CCCCeEEeccc
Q psy2951 856 EYLET--------NVPGVYAGGDI 871 (1466)
Q Consensus 856 ~~~~t--------~~~~iya~GD~ 871 (1466)
..++. ..++||+.|-+
T Consensus 434 rdy~~~~~~~~~~~~~~i~~qg~~ 457 (501)
T 4b63_A 434 RDYRVEMDPSKVSSEAGIWLQGCN 457 (501)
T ss_dssp TTSBBCCCTTTBCTTCEEEECSCC
T ss_pred CCcEEeecCCccCCCceEEecCCC
Confidence 65442 24679999843
|
| >4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-15 Score=186.06 Aligned_cols=279 Identities=14% Similarity=0.116 Sum_probs=161.7
Q ss_pred CCCCCcEEEECCchHHHHHHHHHHhcCCCCc------------EEEEcCCCCC--------CCCCCccc--hh-------
Q psy2951 40 SGNKDTFIVVGGGPSGATCVETLRQNGFTGK------------LYFITDENFL--------PYDRVKLS--KQ------- 90 (1466)
Q Consensus 40 ~~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~------------i~~~~~~~~~--------~~~~~~~~--~~------- 90 (1466)
....+||||||+||+||++|..|++.|.... ...+++.+.. +...+..+ +.
T Consensus 36 ~~~i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~Wh~g~~~p~~~~q~~fl~Dlvtl~~P 115 (501)
T 4b63_A 36 QDELHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFAWHSGMLVPGSKMQISFIKDLATLRDP 115 (501)
T ss_dssp TTSCEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCCSSGGGCCTTCBCSSCGGGSSSTTTCT
T ss_pred CCCcCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCCcCCCCCCCCccccccchhhhccccCC
Confidence 3456899999999999999999998765432 2223332211 11111000 00
Q ss_pred ------------------------cccCcccccccChhhhhcCCeEEEeCceEEEeccc---------cccEEEecCC--
Q psy2951 91 ------------------------LDIKADSILLRTEEFYKDNDIHVIKGKKIISDSEL---------NEKKIKLQDG-- 135 (1466)
Q Consensus 91 ------------------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~---------~~~~v~~~~~-- 135 (1466)
+.....++..|+....++.+..+..++.|...... +.++|++.++
T Consensus 116 ~s~~sf~~yl~~~~rl~~f~~~~~~~p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~ 195 (501)
T 4b63_A 116 RSSFTFLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVET 195 (501)
T ss_dssp TCTTSHHHHHHHHTCHHHHHTTCCSCCBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTT
T ss_pred CCccchHHHHHHhCCccCCccccCCCCCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCC
Confidence 01122344455566666777778888877653211 1366776543
Q ss_pred ---cEEecCEEEEccCCCCCCCCCCCCCCcEEEecCHH-HHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhC--CCEEE
Q psy2951 136 ---TSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVE-DANNIAPHITPESNVVVIGSSFIGMEAAAFCASK--VKSVT 209 (1466)
Q Consensus 136 ---~~~~~d~lviAtG~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~--g~~Vt 209 (1466)
.++.+++||+|||..|..+...+....++.-.... ....+......+|+|+|||+|.+|+|++..|++. +.+|+
T Consensus 196 g~~~~~~ar~vVlatG~~P~iP~~~~~~g~v~Hss~y~~~~~~~~~~~~~gKrV~VVG~G~SA~ei~~~L~~~~~~~~v~ 275 (501)
T 4b63_A 196 GEISARRTRKVVIAIGGTAKMPSGLPQDPRIIHSSKYCTTLPALLKDKSKPYNIAVLGSGQSAAEIFHDLQKRYPNSRTT 275 (501)
T ss_dssp CCEEEEEEEEEEECCCCEECCCTTSCCCTTEEEGGGHHHHHHHHSCCTTSCCEEEEECCSHHHHHHHHHHHHHSTTCEEE
T ss_pred ceEEEEEeCEEEECcCCCCCCCCCCCCCcceeeccccccchhhccccccCCcEEEEECCcHHHHHHHHHHHhcCCCceEE
Confidence 35889999999999887655444444444322222 2223334456789999999999999999999764 68999
Q ss_pred EEeecCccccc--------ccCHHH-------------------------------HHHHHHHH-----H-----hCCcE
Q psy2951 210 VVGRGAVPFQE--------SLGKEV-------------------------------GERITKLF-----E-----SKGVK 240 (1466)
Q Consensus 210 lv~~~~~~~~~--------~~~~~~-------------------------------~~~l~~~l-----~-----~~GV~ 240 (1466)
++.|++...+. .+.+++ .+.+.+.+ . ....+
T Consensus 276 ~~~R~~~~~p~~~s~~~~~~f~p~~~~~f~~l~~~~r~~~~~~~~~~~~~~v~~~li~~i~~~~y~~~~~~~~~~~~~~~ 355 (501)
T 4b63_A 276 LIMRDSAMRPSDDSPFVNEIFNPERVDKFYSQSAAERQRSLLADKATNYSVVRLELIEEIYNDMYLQRVKNPDETQWQHR 355 (501)
T ss_dssp EECSSSSCCBCCCCTTGGGGGSTTHHHHHHTSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCSCGGGCSSE
T ss_pred EEeCCCccccccccccchhhcCHHHHHHHHhCCHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhccCCCccccccee
Confidence 99997543211 111111 11111111 1 11235
Q ss_pred EEcCceEEEEEecCC-CCe-----------EEEEcCCCcEEeccEEEEeeccccCcc-c-ccc-CCceecCCccEEECCC
Q psy2951 241 FVMKANVSSFEKNEK-NDV-----------TAANLDNGTTIPADLVIVGIGTVLNTN-Y-LDG-KGVELNGQKAVVVNEY 305 (1466)
Q Consensus 241 i~~~~~v~~i~~~~~-~~~-----------~~v~~~~g~~i~~D~Vi~a~G~~p~~~-~-l~~-~gl~~~~~g~i~vd~~ 305 (1466)
+..+..+.+++.... +.+ ..+.+++|+++++|.||+|||++++.. + +.. ..+..+.+|.+.|+..
T Consensus 356 l~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~v~~~dg~~~~~D~VI~ATGy~~~~p~~L~~~~~~l~~d~~g~~~v~rd 435 (501)
T 4b63_A 356 ILPERKITRVEHHGPQSRMRIHLKSSKPESEGAANDVKETLEVDALMVATGYNRNAHERLLSKVQHLRPTGQDQWKPHRD 435 (501)
T ss_dssp EECSEEEEEEECCSSSSCEEEEEEESCC--------CCCEEEESEEEECCCEECCTHHHHTGGGGGGSSTTCCSCCBCTT
T ss_pred ecCCcceeeeeecCCCCeEEEEeeeeEEeCCeeEeCCCeEEECCEEEECcCCCCCCcchhcchhhhcCcCcCCCeeeCCC
Confidence 666666666553321 111 124567889999999999999998753 2 211 1244566677777766
Q ss_pred CCc--------CCCCEEEecc
Q psy2951 306 LET--------NVPGVYAGGD 318 (1466)
Q Consensus 306 ~~t--------~~~~iya~GD 318 (1466)
++. ..++||+.|-
T Consensus 436 y~~~~~~~~~~~~~~i~~qg~ 456 (501)
T 4b63_A 436 YRVEMDPSKVSSEAGIWLQGC 456 (501)
T ss_dssp SBBCCCTTTBCTTCEEEECSC
T ss_pred cEEeecCCccCCCceEEecCC
Confidence 542 2467999883
|
| >3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} SCOP: b.33.1.0 PDB: 4emj_B* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.4e-15 Score=139.89 Aligned_cols=77 Identities=22% Similarity=0.476 Sum_probs=68.9
Q ss_pred CCCCEEEEEeeCCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCeEEE
Q psy2951 493 SSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVV 570 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~~ 570 (1466)
++..+ ++++.+|+++|++|.|||+|++|++|.++++.+.||||||+|++++|++..+|+..+|+.|+++++++.+++
T Consensus 22 ~g~~i-~v~r~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~~G~~~~~P~~~~L~~~~v~~~~g~v~v 98 (106)
T 3dqy_A 22 GPEPV-MVCNVDGEFFAVQDTCTHGDWALSDGYLDGDIVECTLHFGKFCVRTGKVKALPACKPIKVFPIKVEGDEVHV 98 (106)
T ss_dssp SSSCE-EEEEETTEEEEEESBCSSSSCBGGGSEEETTEEECTTTCCEEETTTCCEEETTCCSCCCEECEEEETTEEEE
T ss_pred CCEEE-EEEEECCEEEEEeCcCCCCCCCCcCcEEeCCEEECCCCCCEEeCCCCCEeCCCCCCCccEEEEEEECCEEEE
Confidence 43444 555789999999999999999999999999999999999999999999999999899999999998777665
|
| >2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.9e-15 Score=138.09 Aligned_cols=76 Identities=25% Similarity=0.440 Sum_probs=68.5
Q ss_pred CCEEEEEeeCCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCeEEE
Q psy2951 495 TPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVV 570 (1466)
Q Consensus 495 ~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~~ 570 (1466)
++.+++++.+|+++|++|.|||+|++|++|.++++.+.||||||+|++++|++..+|+..+|+.|+++++++.+|+
T Consensus 25 g~~i~v~r~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fd~~~G~~~~~P~~~~L~~~~v~~~~g~v~v 100 (103)
T 2qpz_A 25 GKELALYEVEGEIYATDNLCTHGSARMSDGYLEGREIECPLHQGRFDVCTGKALCAPVTQNIKTYPVKIENLRVMI 100 (103)
T ss_dssp TEEEEEEEETTEEEEEESBCSSSSCBGGGSEEETTEEECTTTTCEEETTTCCEEETTCCSCCCEECEEEETTEEEE
T ss_pred CEEEEEEEECCEEEEECCcCCCCCCCCCCCeEeCCEEECCCCCCEEeCCCCCEeCCCCCCCCCEEeEEEECCEEEE
Confidence 3445555689999999999999999999999988999999999999999999999999889999999998877765
|
| >2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae} | Back alignment and structure |
|---|
Probab=99.57 E-value=9.1e-15 Score=137.50 Aligned_cols=79 Identities=27% Similarity=0.509 Sum_probs=68.5
Q ss_pred CCCCEEEEEeeCCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCeEEEE
Q psy2951 493 SSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVV 571 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~~~ 571 (1466)
++...+++++.+|+++|++|.|||+|++|++|.++++.+.||||||+|++++|++..+|+..+|+.|+++++++.+|+.
T Consensus 24 ~g~~~v~v~r~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~tG~~~~~P~~~~L~~~~v~~~~g~v~v~ 102 (108)
T 2i7f_A 24 EKMPALAVYNVDGEVFVTDNLCTHGNAMLTDGYQDGTIIECPFHGGSFDIATGAAKAFPCQIPIKTYPVTIEDGWVCID 102 (108)
T ss_dssp TTSSCEEEEEETTEEEEEESBCSSSSCBGGGSEEETTEEECSSTTCEEETTTCCBCSTTCCSCCCEECEEEETTEEEEE
T ss_pred CCeeEEEEEEECCEEEEEeCcCCCCCCCCCCCEEeCCEEEcCCCCCEEeCCCcCEeCCCCCCCccEEeEEEECCEEEEe
Confidence 3344144445599999999999999999999999888999999999999999999999998899999999987777654
|
| >3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans} | Back alignment and structure |
|---|
Probab=99.56 E-value=5.8e-15 Score=141.30 Aligned_cols=77 Identities=23% Similarity=0.444 Sum_probs=69.8
Q ss_pred CCEEEEEeeCCeEEEEeCCCCCCCcccCCc--eecCCEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCeEEEE
Q psy2951 495 TPKTLAQSTTSNIYAVGTKCSHYGAPLVKG--SLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVV 571 (1466)
Q Consensus 495 ~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g--~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~~~ 571 (1466)
++.+++++.+|+++|++|.|||+|++|++| .++++.|+||||||+|++++|++..+|+..+|+.|+++++++.+|+.
T Consensus 32 g~~v~v~r~~g~~~A~~n~CpH~g~~L~~G~~~~~~~~i~CP~Hg~~Fdl~tG~~~~~P~~~~L~~~~v~v~~g~V~v~ 110 (121)
T 3gce_A 32 GDEVMVVRDGDSVYAISNLCSHAEAYLDMGVFHAESLEIECPLHVGRFDVRTGAPTALPCVLPVRAYDVVVDGTEILVA 110 (121)
T ss_dssp TEEEEEEEETTEEEEEESBCSSSSCBGGGSEEETTTTEEECTTTCCEEETTTCCEEETTCCSCCCBCCEEEETTEEEEC
T ss_pred CEEEEEEEECCEEEEEeCcCCCCCCCCCCCceeecCCEEEcCCCCCEEcCCCccEeCCCCcCCcceEEEEEECCEEEEE
Confidence 455666667999999999999999999999 78888999999999999999999999999999999999988888764
|
| >2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-14 Score=138.05 Aligned_cols=76 Identities=26% Similarity=0.493 Sum_probs=68.2
Q ss_pred EEEEEeeCCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCeEEEEE
Q psy2951 497 KTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQ 572 (1466)
Q Consensus 497 ~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~~~~ 572 (1466)
.+++++.+|+++|++|.|||+|++|++|.++++.|+||||||+|++++|++..+|+..+|+.|+++++++.+|+..
T Consensus 29 ~v~v~r~~g~~~A~~n~CpH~g~~L~~g~~~~~~i~CP~Hg~~Fdl~tG~~~~~P~~~~L~~~~v~~~~g~V~v~~ 104 (115)
T 2de6_D 29 PLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAG 104 (115)
T ss_dssp EEEEEEETTEEEEEESBCTTSSCBGGGSEEETTEEECTTTCCEEETTTCCEEETTCCSCCCEEEEEESSSEEEEEE
T ss_pred EEEEEEECCEEEEEeCCCCCCCCCCcCCEEeCCEEECCCCCCEEcCCCcCEeCCCCcCCCCEEEEEEECCEEEEec
Confidence 4555566999999999999999999999998889999999999999999999999988999999998777776644
|
| >1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-14 Score=137.67 Aligned_cols=76 Identities=22% Similarity=0.445 Sum_probs=67.9
Q ss_pred CCEEEEEeeCCeEEEEeCCCCCCCcccCCc-eecCCEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCeEEE
Q psy2951 495 TPKTLAQSTTSNIYAVGTKCSHYGAPLVKG-SLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVV 570 (1466)
Q Consensus 495 ~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g-~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~~ 570 (1466)
++.+++++.+|+++|++|.|||+|++|++| .++++.++||||||+|++++|++..+|+..+|+.|+++++++.+|+
T Consensus 27 g~~i~v~r~~g~~~A~~n~CpH~g~~L~~g~~~~~~~i~CP~Hg~~Fd~~tG~~~~~P~~~~L~~~~v~~~~g~v~v 103 (112)
T 1fqt_A 27 GTSVAIFNVDGELFATQDRCTHGDWSLSDGGYLEGDVVECSLHMGKFCVRTGKVKSPPPCEALKIFPIRIEDNDVLV 103 (112)
T ss_dssp TEEEEEEEETTEEEEEESBCTTSSCBSSTTCCEETTEEECTTTCCEEETTTCCEEESSCCSCCCBCCEEEETTEEEE
T ss_pred CEEEEEEEECCEEEEEECCCCCCCcCCCCCCEEcCCEEECCCCCCEEeCCCCcEeCCCCCCCccEEEEEEECCEEEE
Confidence 345566666999999999999999999999 8888899999999999999999999999889999999998777665
|
| >1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.9e-14 Score=136.09 Aligned_cols=76 Identities=28% Similarity=0.373 Sum_probs=66.8
Q ss_pred CCEEEEEee-CCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCeEEEE
Q psy2951 495 TPKTLAQST-TSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVV 571 (1466)
Q Consensus 495 ~~~~~~~~~-~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~~~ 571 (1466)
++.+++++. +|+++|++|.|||+|++|++|.++++.++||||||+|+++||++.. |+..+|+.|+++++++.+|+.
T Consensus 24 g~~v~v~r~~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fd~~tG~~~~-p~~~~L~~~~v~~~~g~v~v~ 100 (111)
T 1vm9_A 24 GTEVLIVNSEEHGVKAYQAMCPHQEILLSEGSYEGGVITCRAHLWTFNDGTGHGIN-PDDAALAEYPVEVKGDDIYVS 100 (111)
T ss_dssp CCEEEEEEETTTEEEEEESBCSSSSCBGGGSEEETTEEECTTTCCEEETTTCBBSS-SSSCBCCEECEEEETTEEEEC
T ss_pred CCEEEEEEeCCCeEEEEeCcCCCCCcCCCCceEcCCEEEcCCCCCEEeCCCccCCC-CCcCCcCEEEEEEECCEEEEe
Confidence 345555554 9999999999999999999999988899999999999999999988 888899999999987777653
|
| >4aiv_A Probable nitrite reductase [NAD(P)H] small subuni; oxidoreductase, nitrite metabolism; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.4e-14 Score=137.04 Aligned_cols=81 Identities=20% Similarity=0.272 Sum_probs=63.6
Q ss_pred cCCCCCEEEEEeeCCeEEEEeCCCCCCCcccCCceecC-----CEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEc
Q psy2951 491 PASSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGD-----GRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQN 565 (1466)
Q Consensus 491 ~~~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~~-----~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~ 565 (1466)
..++..+++++..+|++||++|+|||++++|..+.+.+ ..|.||||+|+|+++||+|.+.|+ .+++.|+++++.
T Consensus 29 ~~~G~~v~l~r~~dG~v~A~~n~CpH~ga~L~~~~~~~~~~~~~~i~CP~Hg~~Fdl~tG~~~~~p~-~~l~~ypv~ve~ 107 (119)
T 4aiv_A 29 LDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVGDRGGRAMVQSPILKQAFALDDGSCLDDPR-VSVPVYPARVTP 107 (119)
T ss_dssp CTTSCEEEEEECTTSCEEEEESBCTTTCCBCGGGSEEEEETTEEEEECTTTCCEEETTTCBBSSCTT-CBCCEECEEECT
T ss_pred EcCCcEEEEEEcCCCeEEEEECCCCCCCCccccCceeccccCCCEEECCCCCCEEeCCCCcCcCCCC-CccceEEEEEEe
Confidence 33444455555568999999999999999997765543 259999999999999999999887 478999999874
Q ss_pred -CeEEEEE
Q psy2951 566 -DDSVVVQ 572 (1466)
Q Consensus 566 -~~~~~~~ 572 (1466)
|.+|+..
T Consensus 108 dG~V~V~~ 115 (119)
T 4aiv_A 108 EGRIQVAR 115 (119)
T ss_dssp TSEEEEEE
T ss_pred CCEEEEec
Confidence 5566543
|
| >2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.3e-15 Score=180.02 Aligned_cols=226 Identities=12% Similarity=0.082 Sum_probs=126.6
Q ss_pred HhHhhhCCcEEEEceEEEEeccccccEE---Ec-cCCCEEecCEEEEcCCCCCCcCCCCCCCCcEEEecCHHHHHhhc--
Q psy2951 655 EEFYKDNDIHVIKGKKIISDSELNEKKI---KL-QDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIA-- 728 (1466)
Q Consensus 655 ~~~~~~~gv~~~~~~~v~~i~~~~~~~v---~~-~~~~~~~~d~lviAtG~~~~~~~~~~g~~~~~~~~~~~~~~~~~-- 728 (1466)
.+.+++.|++++.++.| .+ ..++..+ .+ .++.++.+|+||+|||+.+..++.. ......+...+..+.+..
T Consensus 126 ~~~~~~~gv~i~~~~~v-~l-~~~~~~v~Gv~v~~~~g~~~a~~VVlAtGg~~~~~~~~-~~~~~~tGdgi~~a~~aGa~ 202 (472)
T 2e5v_A 126 LKLAREEGIPIIEDRLV-EI-RVKDGKVTGFVTEKRGLVEDVDKLVLATGGYSYLYEYS-STQSTNIGDGMAIAFKAGTI 202 (472)
T ss_dssp HHHHHHTTCCEECCCEE-EE-EEETTEEEEEEETTTEEECCCSEEEECCCCCGGGSSSB-SSCTTCSCHHHHHHHHTTCC
T ss_pred HHHHHhCCCEEEECcEE-EE-EEeCCEEEEEEEEeCCCeEEeeeEEECCCCCcccCccc-cCCCCCchHHHHHHHHcCCC
Confidence 34445679999999988 87 4333332 22 2233578999999999887666543 111111111111221110
Q ss_pred ----ccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHH--------HHHHHHHHHHhcCcEEEcc
Q psy2951 729 ----PHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKE--------VGERITKLFESKGVKFVMK 796 (1466)
Q Consensus 729 ----~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~--------~~~~~~~~l~~~gv~~~~~ 796 (1466)
+.......++++|+| +++++..++..|..+ +..+.++++. .++++ +...+.+.+++.|. ++++
T Consensus 203 ~~d~e~~q~~p~~~~~ggg--~~~~ae~~~~~G~~~-v~~~g~rf~~-~~~~~~el~~rd~v~~~i~~~~~~~~~-v~ld 277 (472)
T 2e5v_A 203 LADMEFVQFHPTVTSLDGE--VFLLTETLRGEGAQI-INENGERFLF-NYDKRGELAPRDILSRAIYIEMLKGHK-VFID 277 (472)
T ss_dssp EECTTCEEEEEEEECGGGC--CEECCTHHHHTTCEE-EETTCCCGGG-GTCTTGGGSCHHHHHHHHHHHHHHTCC-EEEE
T ss_pred EeCCcceEEEeEEEccCCC--ceeeehhhcCCceEE-ECCCCCCCCc-cCCcccCcCchhHHHHHHHHHHHhCCc-EEEe
Confidence 000001234455766 888888888888877 6667766653 22322 24556666666653 2221
Q ss_pred ceEEEEEecCCCceEEEECCCCcEEe-cCEEEEccccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccC
Q psy2951 797 ANVSSFEKNEKNDVTAANLDNGTTIP-ADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 875 (1466)
Q Consensus 797 ~~v~~i~~~~~~~~~~v~~~~g~~i~-~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~ 875 (1466)
... + + . + .+.++ .|.++++.|..|+ ++++.........|.|.||+++||+.|+|||+|||+...
T Consensus 278 ~~~--~----~-~-----~--~~~~~~~~~~~~~~G~dp~-~~i~v~p~~~~~~GGI~vd~~~~t~ipgLyAaGd~a~~~ 342 (472)
T 2e5v_A 278 LSK--I----E-D-----F--ERKFPVVAKYLARHGHNYK-VKIPIFPAAHFVDGGIRVNIRGESNIVNLYAIGEVSDSG 342 (472)
T ss_dssp CTT--C----T-T-----H--HHHCHHHHHHHHHTTCCTT-SCEECEEEEEEESCEEECCTTCBCSSBTEEECGGGEECS
T ss_pred ccc--h----H-H-----H--HHHhHHHHHHHHHhCcCcc-cceEeehhhceeCCCeEECCCCccccCCEEecchhcccc
Confidence 110 0 0 0 0 01233 4677888899998 665433233344689999999999999999999998732
Q ss_pred CcccCCceeeeccHHHHHHHHHHHHHHhcc
Q psy2951 876 LHSFYNKNASIGHYQLAQYHGRIAALNMVE 905 (1466)
Q Consensus 876 ~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~ 905 (1466)
.. +..+........+...|+.|+.++++
T Consensus 343 ~h--g~~rl~~~sl~~~~v~G~~a~~~~a~ 370 (472)
T 2e5v_A 343 LH--GANRLASNSLLEGLVFGINLPRYVDS 370 (472)
T ss_dssp SS--TTSCCTTHHHHHHHHHHHHGGGTTTS
T ss_pred cC--CCCCCCcccHHHHHHHHHHHHHHHHh
Confidence 11 11111111223444556666666654
|
| >3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3 | Back alignment and structure |
|---|
Probab=99.48 E-value=3.5e-14 Score=135.54 Aligned_cols=75 Identities=20% Similarity=0.269 Sum_probs=64.2
Q ss_pred CEEEEEe-eCCeEEEEeCCCCCCCc-ccCCceecCC----EEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCeEE
Q psy2951 496 PKTLAQS-TTSNIYAVGTKCSHYGA-PLVKGSLGDG----RVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSV 569 (1466)
Q Consensus 496 ~~~~~~~-~~g~~~a~~~~C~H~~~-~l~~g~~~~~----~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~ 569 (1466)
..+++++ .+|+++|++|.|||+++ +|+.|.+++. .|+||||||+|++++|++..+|+ .+|+.|+++++++.+|
T Consensus 28 ~~v~v~r~~~G~~~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fdl~tG~~~~~P~-~~l~~~~v~v~~g~V~ 106 (119)
T 3c0d_A 28 ERVALFYIPDSGVYAVQDWDPIGKAYVMSRGIVGDINGEMCVASPLYKQHFSLKSGQCLEDEA-HCLKTWRVTVDDNQVC 106 (119)
T ss_dssp EEEEEEEETTTEEEEEESEETTTTEECGGGSEEEESSSSEEEECTTTCCEEETTTCBBSSCTT-CBCCEECEEESSSEEE
T ss_pred eEEEEEEecCCeEEEEeCCCCCCCCccCCCeEEcCCCCCeEEECCCCCCEEECCCCcCCCCCC-ceeeEEEEEEECCEEE
Confidence 3445555 59999999999999999 7999998753 89999999999999999999998 7899999999777666
Q ss_pred EE
Q psy2951 570 VV 571 (1466)
Q Consensus 570 ~~ 571 (1466)
+.
T Consensus 107 v~ 108 (119)
T 3c0d_A 107 YL 108 (119)
T ss_dssp EE
T ss_pred EE
Confidence 53
|
| >2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3 | Back alignment and structure |
|---|
Probab=99.47 E-value=8.9e-14 Score=131.92 Aligned_cols=74 Identities=14% Similarity=0.215 Sum_probs=63.6
Q ss_pred CEEEEEee-CC-eEEEEeCCCCCCCc-ccCCceec---CC-EEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCeE
Q psy2951 496 PKTLAQST-TS-NIYAVGTKCSHYGA-PLVKGSLG---DG-RVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDS 568 (1466)
Q Consensus 496 ~~~~~~~~-~g-~~~a~~~~C~H~~~-~l~~g~~~---~~-~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~~ 568 (1466)
..+++++. +| +++|++|.|||+++ +|++|.+. +. .|.||||||+|++++|++...|+ .+|+.|+++++++.+
T Consensus 29 ~~i~v~r~~~g~~~~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fd~~tG~~~~~P~-~~l~~~~v~v~~g~V 107 (113)
T 2jo6_A 29 EQVAIFRPYHSDQVFAISNIDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLSDGLCMEDEQ-FSVKHYEARVKDGVV 107 (113)
T ss_dssp EEEEEEECSSSSCCEEEESSCSSSCCSCSTTSEEEEETTEEEEEETTTTEEEETTTTEETTTTT-TCCCEEEEEEETTEE
T ss_pred EEEEEEEECCCCEEEEEeCcCCCCCCcccCCeEEeccCCCcEEECCCCCCEEeCCCccCCCCCc-ccccEEeEEEECCEE
Confidence 34455554 89 69999999999999 79999886 23 89999999999999999999998 789999999988777
Q ss_pred EE
Q psy2951 569 VV 570 (1466)
Q Consensus 569 ~~ 570 (1466)
|+
T Consensus 108 ~v 109 (113)
T 2jo6_A 108 QL 109 (113)
T ss_dssp EE
T ss_pred EE
Confidence 65
|
| >2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.46 E-value=7.3e-15 Score=178.84 Aligned_cols=222 Identities=13% Similarity=0.087 Sum_probs=129.7
Q ss_pred ccCCcEEEcCCeEEEeecCCCCeE---Eec-CCcEEecCeEEEecCCCCCcCCCCCCCCcEEEecCHHHHHhhhcccCC-
Q psy2951 1130 KDNDIHVIKGKKIISDSELNEKKI---KLQ-DGTSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITP- 1204 (1466)
Q Consensus 1130 ~~~~v~~~~~~~v~~i~d~~~~~v---~~~-~g~~~~yd~lvlAtG~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~- 1204 (1466)
++.+++++.+++| ++ ..+...+ .+. ++.++.+|.+|+|||+.+..++.+.+... .+.....-+.+.-..+..
T Consensus 130 ~~~gv~i~~~~~v-~l-~~~~~~v~Gv~v~~~~g~~~a~~VVlAtGg~~~~~~~~~~~~~-~tGdgi~~a~~aGa~~~d~ 206 (472)
T 2e5v_A 130 REEGIPIIEDRLV-EI-RVKDGKVTGFVTEKRGLVEDVDKLVLATGGYSYLYEYSSTQST-NIGDGMAIAFKAGTILADM 206 (472)
T ss_dssp HHTTCCEECCCEE-EE-EEETTEEEEEEETTTEEECCCSEEEECCCCCGGGSSSBSSCTT-CSCHHHHHHHHTTCCEECT
T ss_pred HhCCCEEEECcEE-EE-EEeCCEEEEEEEEeCCCeEEeeeEEECCCCCcccCccccCCCC-CchHHHHHHHHcCCCEeCC
Confidence 4569999999999 98 6655544 332 22357899999999997776554311110 011111111111111111
Q ss_pred -----CCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCccccc------H-HHHHHHHHHHHhCCcEEEcCceEEE
Q psy2951 1205 -----ESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLG------K-EVGERITKLFESKGVKFVMKANVSS 1272 (1466)
Q Consensus 1205 -----~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~------~-~~~~~l~~~~~~~gv~~~~~~~v~~ 1272 (1466)
...++++|+| +++++..++..|..+ +..+.++.+.+.-+ . .++..+.+.+++.|. ++++..
T Consensus 207 e~~q~~p~~~~~ggg--~~~~ae~~~~~G~~~-v~~~g~rf~~~~~~~~el~~rd~v~~~i~~~~~~~~~-v~ld~~--- 279 (472)
T 2e5v_A 207 EFVQFHPTVTSLDGE--VFLLTETLRGEGAQI-INENGERFLFNYDKRGELAPRDILSRAIYIEMLKGHK-VFIDLS--- 279 (472)
T ss_dssp TCEEEEEEEECGGGC--CEECCTHHHHTTCEE-EETTCCCGGGGTCTTGGGSCHHHHHHHHHHHHHHTCC-EEEECT---
T ss_pred cceEEEeEEEccCCC--ceeeehhhcCCceEE-ECCCCCCCCccCCcccCcCchhHHHHHHHHHHHhCCc-EEEecc---
Confidence 1234556766 788888888888887 77787777643211 1 135666666766663 222111
Q ss_pred EEecCCCcEEEEEcCCCCeee-cCEEEEeeccccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCC
Q psy2951 1273 FEKNEKNDVTAANLDNGTTIP-ADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFY 1351 (1466)
Q Consensus 1273 i~~~~~g~~~~v~l~~g~~i~-~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~ 1351 (1466)
.-.. + .++++ .|.++++.|..|+ +++.-........|+|.||+++||+.|+|||+|||+.....
T Consensus 280 ----~~~~-----~--~~~~~~~~~~~~~~G~dp~-~~i~v~p~~~~~~GGI~vd~~~~t~ipgLyAaGd~a~~~~h--- 344 (472)
T 2e5v_A 280 ----KIED-----F--ERKFPVVAKYLARHGHNYK-VKIPIFPAAHFVDGGIRVNIRGESNIVNLYAIGEVSDSGLH--- 344 (472)
T ss_dssp ----TCTT-----H--HHHCHHHHHHHHHTTCCTT-SCEECEEEEEEESCEEECCTTCBCSSBTEEECGGGEECSSS---
T ss_pred ----chHH-----H--HHHhHHHHHHHHHhCcCcc-cceEeehhhceeCCCeEECCCCccccCCEEecchhcccccC---
Confidence 0000 1 12343 4677888899999 76554322334467899999999999999999999873211
Q ss_pred Cceeeee--cHHHHHHHHHHHHHHhcCC
Q psy2951 1352 NKNASIG--HYQLAQYHGRIAALNMVEK 1377 (1466)
Q Consensus 1352 ~~~~~~~--~~~~A~~qa~~aa~~i~g~ 1377 (1466)
|.. +.. .+..+...|+.|++++++.
T Consensus 345 g~~-rl~~~sl~~~~v~G~~a~~~~a~~ 371 (472)
T 2e5v_A 345 GAN-RLASNSLLEGLVFGINLPRYVDSS 371 (472)
T ss_dssp TTS-CCTTHHHHHHHHHHHHGGGTTTSC
T ss_pred CCC-CCCcccHHHHHHHHHHHHHHHHhh
Confidence 111 222 2445555677777777654
|
| >4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.1e-13 Score=137.32 Aligned_cols=79 Identities=22% Similarity=0.317 Sum_probs=67.8
Q ss_pred CCEEEEEee----------CCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECC-CCeeecCCCCCCCCeEEEEE
Q psy2951 495 TPKTLAQST----------TSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIA-TGDIEDFPGMDSLPCYKVTI 563 (1466)
Q Consensus 495 ~~~~~~~~~----------~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~-~G~~~~~p~~~~l~~~~v~i 563 (1466)
+..+++++. +|+++|++|.|||+|++|.+| .+++.|.||||+|+|+++ +|++..+|+..+|+.|++++
T Consensus 74 ~~pv~v~R~g~~~~~~r~~~G~v~A~~n~CpH~G~~L~~g-~~~~~i~CP~Hg~~Fd~~~tG~~~~gPa~~~L~~y~v~v 152 (175)
T 4aay_B 74 DAAGVLLKLGTRVEGGVGPDGDIVGFSTICPHKGFPLSYS-ADNKTFNCPGHFSVFDPEKGGQQVWGQATQNLPQYVLRV 152 (175)
T ss_dssp TSEEEEEECSSCCTTCBTTTTCEEEEECBCTTTCCBCEEE-TTTTEEECTTTCCEEEGGGTTEEEECSCSSCCCBEEEEE
T ss_pred CCEEEEEEcccccccccCCCCEEEEEeCCCCCCCCCCccC-CCCCEEEcCCCCCEECCCCCceEecCCCCCCcCEEEEEE
Confidence 445666665 899999999999999999988 677899999999999998 99999999999999999999
Q ss_pred -EcCeEEEEEcc
Q psy2951 564 -QNDDSVVVQAR 574 (1466)
Q Consensus 564 -~~~~~~~~~~~ 574 (1466)
+++.+|....+
T Consensus 153 d~dG~V~avg~~ 164 (175)
T 4aay_B 153 ADNGDIFAEGVD 164 (175)
T ss_dssp CTTSEEEEEEES
T ss_pred EcCCEEEEEEcc
Confidence 46776655433
|
| >1rie_A Rieske iron-sulfur protein; oxidoreductase, cytochrome BC1 complex, histidine ligands, rieske iron-sulfur cluster, electron transport; 1.50A {Bos taurus} SCOP: b.33.1.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-13 Score=133.19 Aligned_cols=66 Identities=21% Similarity=0.351 Sum_probs=60.2
Q ss_pred CCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCCCCCCeEEEEE-EcCeEEE
Q psy2951 504 TSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTI-QNDDSVV 570 (1466)
Q Consensus 504 ~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i-~~~~~~~ 570 (1466)
+|+++|++|.|||+|++|.+|..+++.+.||||||+|++ +|++..+|+..+|+.|++++ +++.+++
T Consensus 62 ~g~~~a~~~~C~H~g~~l~~g~~~~~~i~CP~Hg~~fd~-~G~~~~~P~~~~l~~~~v~v~~~~~v~v 128 (129)
T 1rie_A 62 KPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDA-SGRIRKGPAPLNLEVPSYEFTSDDMVIV 128 (129)
T ss_dssp STTEEEEECCCTTTSCCCEETCTTTEEEEETTTTEEEET-TCCEEESSCCSCCCCCCEEESSSSEEEE
T ss_pred CCeEEEEECccCCCCeecccccCCCCEEEcCCCCCEEcC-CCCEeeCCCCCCCCceeEEEEeCCEEEE
Confidence 899999999999999999999888789999999999999 89999999999999999998 5665543
|
| >1g8k_B Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.33.1.1 PDB: 1g8j_B* | Back alignment and structure |
|---|
Probab=99.40 E-value=8.4e-13 Score=128.03 Aligned_cols=79 Identities=20% Similarity=0.299 Sum_probs=66.5
Q ss_pred CCEEEEEee----------CCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECC-CCeeecCCCCCCCCeEEEEE
Q psy2951 495 TPKTLAQST----------TSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIA-TGDIEDFPGMDSLPCYKVTI 563 (1466)
Q Consensus 495 ~~~~~~~~~----------~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~-~G~~~~~p~~~~l~~~~v~i 563 (1466)
+..+++++. +|+++|++|.|||+|++|++. .+++.+.||||||+|+++ +|++..+|+..+|+.|++++
T Consensus 31 g~~v~v~r~~~~~~~~~~~~g~~~A~~n~CpH~g~~L~~~-~~~~~i~CP~Hg~~Fd~~~~G~~~~gP~~~~L~~~~v~v 109 (133)
T 1g8k_B 31 SSPCVAVKLGAPVPGGVGPDDDIVAYSVLCTHMGCPTSYD-SSSKTFSCPCHFTEFDAEKAGQMICGEATADLPRVLLRY 109 (133)
T ss_dssp TSEEEEEECSSCCTTCBTTTTCEEEEECBCTTTCCBCEEE-TTTTEEECTTTCCEEEGGGTTEEEESSCSSCCCEEEEEE
T ss_pred CceEEEEEccccccccccCCCEEEEEeCcCCCCCCCCCcc-cCCCEEECCCCCCEECCCCCCCEEcCCCCCCCCEEEEEE
Confidence 455666665 899999999999999999873 567799999999999998 89999999999999999999
Q ss_pred Ec--CeEEEEEcc
Q psy2951 564 QN--DDSVVVQAR 574 (1466)
Q Consensus 564 ~~--~~~~~~~~~ 574 (1466)
++ +.+++...+
T Consensus 110 ~~~g~~V~v~g~~ 122 (133)
T 1g8k_B 110 DAASDALTAVGVD 122 (133)
T ss_dssp ETTTTEEEEEEEE
T ss_pred ECCCCEEEEEecc
Confidence 84 446665444
|
| >2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3 | Back alignment and structure |
|---|
Probab=99.40 E-value=3.5e-13 Score=130.65 Aligned_cols=77 Identities=17% Similarity=0.210 Sum_probs=64.3
Q ss_pred CCEEEEEee-CC-eEEEEeCCCCCCCc-ccCCceec---C-CEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCe
Q psy2951 495 TPKTLAQST-TS-NIYAVGTKCSHYGA-PLVKGSLG---D-GRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDD 567 (1466)
Q Consensus 495 ~~~~~~~~~-~g-~~~a~~~~C~H~~~-~l~~g~~~---~-~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~ 567 (1466)
+..+++++. +| +++|++|+|||+|+ +|+.|.+. + ..|+||||||+|++++|++..+|+ .+|+.|+++++++.
T Consensus 25 g~~i~v~r~~~g~~v~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fdl~tG~~~~~P~-~~L~~~~v~v~~g~ 103 (130)
T 2jza_A 25 QQQIAVFRPRNDEQVYAISNIDPFAQASVLSRGIVAEHQDDLWVASPLKKQHFRLYDGFCLEDGA-YSVAAYDTQVTNGN 103 (130)
T ss_dssp TEEEEEEBCSSSSCCEEEBCCCTTTSSGGGTSSEEEESSSSEEEECSSSCCEEETTTCCBSSCCS-SCCBCCCEEESSSE
T ss_pred CcEEEEEEECCCCEEEEEeCcCCCCCCCcCCCccCcccCCCeEEECCCCCCEEeCCCcCCCCCCc-CcceEEEEEEECCE
Confidence 344555554 77 89999999999999 59999886 3 289999999999999999999998 78999999987777
Q ss_pred EEEEE
Q psy2951 568 SVVVQ 572 (1466)
Q Consensus 568 ~~~~~ 572 (1466)
+|+..
T Consensus 104 V~V~~ 108 (130)
T 2jza_A 104 VQISI 108 (130)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 66543
|
| >1rfs_A Rieske protein; iron-sulfur protein, electron transport; 1.83A {Spinacia oleracea} SCOP: b.33.1.1 PDB: 1q90_C* | Back alignment and structure |
|---|
Probab=99.39 E-value=3.8e-13 Score=131.05 Aligned_cols=77 Identities=21% Similarity=0.449 Sum_probs=67.9
Q ss_pred CCCEEEEEeeCCeE--EEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCeEEEE
Q psy2951 494 STPKTLAQSTTSNI--YAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVV 571 (1466)
Q Consensus 494 ~~~~~~~~~~~g~~--~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~~~ 571 (1466)
++..+++++.+|++ +|++|.|||++++|+++. .++.++||||||+|+. +|++..+|+..+|+.|+++++++.+++.
T Consensus 45 g~~~ilv~~~~G~i~~~A~~n~CpH~g~~L~~g~-~~~~i~CP~Hg~~Fd~-tG~~~~~P~~~~L~~~~v~v~~g~V~V~ 122 (139)
T 1rfs_A 45 GDPTYLVVESDKTLATFGINAVCTHLGCVVPFNA-AENKFICPCHGSQYNN-QGRVVRGPAPLSLALAHCDVDDGKVVFV 122 (139)
T ss_dssp GCEEEEEBCTTSSBCSEEEECBCTTTCCBCCEET-TTTEEECTTTCCEEET-TCCEEESSCCSCCCEEEEEEETTEEEEE
T ss_pred CCeEEEEEeCCCcEEEEEEeCcCCCCCCCCccCC-CCCEEEcCCCCCEECC-CCCCccCCCCCCCCEEEEEEECCEEEEE
Confidence 45567777889999 999999999999999877 5679999999999996 8999999998999999999988877765
Q ss_pred E
Q psy2951 572 Q 572 (1466)
Q Consensus 572 ~ 572 (1466)
.
T Consensus 123 ~ 123 (139)
T 1rfs_A 123 P 123 (139)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.7e-12 Score=142.22 Aligned_cols=157 Identities=20% Similarity=0.270 Sum_probs=114.7
Q ss_pred CeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCC----------------cccc-------cHHHHHHHHHHHHhC-C
Q psy2951 1206 SNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF----------------QESL-------GKEVGERITKLFESK-G 1261 (1466)
Q Consensus 1206 ~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~----------------~~~~-------~~~~~~~l~~~~~~~-g 1261 (1466)
.+|+|||+|++|+++|..|++.|.+|+++++..... .+.+ ...+.+.+.+.+++. |
T Consensus 4 ~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~l~~~~~~~~g 83 (232)
T 2cul_A 4 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRP 83 (232)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTT
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcccCccccccchhhHHhhhccCCCCCHHHHHHHHHHHHHcCCC
Confidence 479999999999999999999999999999862110 0011 136677888889887 9
Q ss_pred cEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccCc--------------------cc---cccCCceee
Q psy2951 1262 VKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNT--------------------NY---LDGKGVELN 1318 (1466)
Q Consensus 1262 v~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~~--------------------~~---~~~~gl~~~ 1318 (1466)
++++ +.+|+++. .+++++..|.+.+|+++++|.||+|+|..++. ++ +++.|+.++
T Consensus 84 v~i~-~~~v~~i~-~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~~~~~G~~~~~~g~~g~~~~~~l~~~l~~~g~~~~ 161 (232)
T 2cul_A 84 LHLF-QATATGLL-LEGNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLGGVVEEAGRLSEASYPDLLEDLSRLGFRFV 161 (232)
T ss_dssp EEEE-ECCEEEEE-EETTEEEEEEETTSCCEECSEEEECCTTCSSCEEEETTEEESEEETTEECCSHHHHHHHHTTCCEE
T ss_pred cEEE-EeEEEEEE-EeCCEEEEEEECCCCEEECCEEEECCCCChhhceecCCccCCCCCCcccchhhhCHHHHhCCCeEE
Confidence 9998 57999997 44556667888999899999999999994432 22 234555544
Q ss_pred CCCeEE---------------eC-------CCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcC
Q psy2951 1319 GQKAVV---------------VN-------EYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVE 1376 (1466)
Q Consensus 1319 ~~G~i~---------------vd-------~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g 1376 (1466)
...++. +. ....|++|+|||+|||+ ... .|..|..||+.+|.+|+.
T Consensus 162 ~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~t~~p~iya~G~~a-~~g-----------~~~~~~~~g~~~a~~i~~ 229 (232)
T 2cul_A 162 EREGEVPETPSTPGYRVRYLAFHPEEWEEKTFRLKRLEGLYAVGLCV-REG-----------DYARMSEEGKRLAEHLLH 229 (232)
T ss_dssp EEEEEEC-----CCEEEEEEEECGGGEETTTTEETTSBSEEECGGGT-SCC-----------CHHHHHHHHHHHHHHHHH
T ss_pred ccccccCcCCCCCCccCchhhcccCCCCCccccccccccceeeeecc-cCc-----------cHHHHHHHHHHHHHHHHh
Confidence 221111 11 01236899999999999 432 457899999999999874
|
| >3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} SCOP: b.33.1.0 PDB: 4emj_B* | Back alignment and structure |
|---|
Probab=99.36 E-value=4.2e-13 Score=125.57 Aligned_cols=73 Identities=23% Similarity=0.477 Sum_probs=67.4
Q ss_pred hhhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEEEcchh
Q psy2951 974 AERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQARKD 1047 (1466)
Q Consensus 974 ~~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~~~~~~ 1047 (1466)
.+|+++|+.+.|||.+++|..|.+.+..+.||||||+|++++|++...|+..+|+.|++++ .++.+++...+.
T Consensus 31 ~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~~G~~~~~P~~~~L~~~~v~~-~~g~v~v~~~~~ 103 (106)
T 3dqy_A 31 VDGEFFAVQDTCTHGDWALSDGYLDGDIVECTLHFGKFCVRTGKVKALPACKPIKVFPIKV-EGDEVHVDLDNG 103 (106)
T ss_dssp ETTEEEEEESBCSSSSCBGGGSEEETTEEECTTTCCEEETTTCCEEETTCCSCCCEECEEE-ETTEEEECGGGC
T ss_pred ECCEEEEEeCcCCCCCCCCcCcEEeCCEEECCCCCCEEeCCCCCEeCCCCCCCccEEEEEE-ECCEEEEEcccc
Confidence 4789999999999999999999999999999999999999999999999999999999999 688999876543
|
| >3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.3e-12 Score=131.74 Aligned_cols=78 Identities=24% Similarity=0.392 Sum_probs=63.1
Q ss_pred CCEEEEEeeCCeEEEEeCCCCCCCcccCCceecC----CEEEccCCCceEECCCCeeec---CC----CC-------CCC
Q psy2951 495 TPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGD----GRVRCPWHGACFNIATGDIED---FP----GM-------DSL 556 (1466)
Q Consensus 495 ~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~~----~~~~Cp~H~~~f~~~~G~~~~---~p----~~-------~~l 556 (1466)
+..++++|.+|+++|++|+|||+|++|++|.+++ +.|+||||||+|++++|++.. .| +. .+|
T Consensus 38 g~~i~v~r~~G~v~A~~n~CpH~g~~L~~G~~~~~~g~~~i~CP~Hgw~Fdl~tG~~~~~~i~P~~~~~~~~~~~~~~~L 117 (157)
T 3d89_A 38 DREVVIFYHKGEYHAMDIRCYHSGGPLHLGEIEDFNGQSCIVCPWHKYKITLATGEGLYQSINPKDPSAKPKWCSKGVKQ 117 (157)
T ss_dssp TEEEEEEEETTEEEEEESBCTTTCCBGGGSEEEEETTEEEEECTTTCCEEETTTCEEEEEECCCC-----CEEEEEEECS
T ss_pred CEEEEEEEECCEEEEEeCCCCCCCCCCcCCEecCcCCCCEEECCCCCCEEecCCcCEEEeccCCCccccccccccccCcc
Confidence 3445555589999999999999999999998863 589999999999999999874 13 32 368
Q ss_pred CeEEEEEEcCeEEEEE
Q psy2951 557 PCYKVTIQNDDSVVVQ 572 (1466)
Q Consensus 557 ~~~~v~i~~~~~~~~~ 572 (1466)
+.|+++++++.+|+..
T Consensus 118 ~~~~v~v~~G~V~V~~ 133 (157)
T 3d89_A 118 RIHTVKVDNGNIYVTL 133 (157)
T ss_dssp CEEEEEEETTEEEEEC
T ss_pred eEEEEEEECCEEEEEe
Confidence 9999999887777643
|
| >3azc_A Cytochrome B6-F complex iron-sulfur subunit; rieske, thermosynechococcus elongatu photosynthesis, electron transport; 2.00A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=99.02 E-value=9.3e-14 Score=132.71 Aligned_cols=76 Identities=24% Similarity=0.468 Sum_probs=67.8
Q ss_pred CCCEEEEEeeCCe--EEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCCCCCCeEEEEE-EcCeEEE
Q psy2951 494 STPKTLAQSTTSN--IYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTI-QNDDSVV 570 (1466)
Q Consensus 494 ~~~~~~~~~~~g~--~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i-~~~~~~~ 570 (1466)
++..+++++.+|+ ++|++|+|||++++|++|. .++.++||||||+|+ .+|++..+|+..+|+.|++++ +++.+++
T Consensus 39 g~~~vlv~~~~G~~~v~A~~n~CpH~g~~L~~g~-~~~~i~CP~Hg~~Fd-~tG~~~~~P~~~~L~~ypv~v~~~g~V~V 116 (133)
T 3azc_A 39 GDPTYVIVTEDHQIANYGLNAVCTHLGCVVPWNV-SENKFICPCHGSQYD-STGKVVRGPAPLSLALVKATVTEDDKLVF 116 (133)
Confidence 4677888888898 9999999999999999887 667999999999999 789999999988999999998 7777766
Q ss_pred E
Q psy2951 571 V 571 (1466)
Q Consensus 571 ~ 571 (1466)
.
T Consensus 117 ~ 117 (133)
T 3azc_A 117 T 117 (133)
Confidence 4
|
| >2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 | Back alignment and structure |
|---|
Probab=99.34 E-value=6e-12 Score=137.82 Aligned_cols=157 Identities=18% Similarity=0.260 Sum_probs=112.2
Q ss_pred CcEEEECCChHHHHHHHHHhccCCeEEEEeecCcc----------------Ccccc-------CHHHHHHHHHHHHhc-C
Q psy2951 735 SNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP----------------FQESL-------GKEVGERITKLFESK-G 790 (1466)
Q Consensus 735 ~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~----------------~~~~~-------~~~~~~~~~~~l~~~-g 790 (1466)
-+|+|||+|++|+++|..|++.|.+|+++++.... +.+.+ ...+...+.+.+++. |
T Consensus 4 ~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~l~~~~~~~~g 83 (232)
T 2cul_A 4 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRP 83 (232)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTT
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcccCccccccchhhHHhhhccCCCCCHHHHHHHHHHHHHcCCC
Confidence 47999999999999999999999999999986210 00111 135667788888887 9
Q ss_pred cEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCcc--------------------c---cccCCceee
Q psy2951 791 VKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTN--------------------Y---LDGKGVELN 847 (1466)
Q Consensus 791 v~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~--------------------~---~~~~gl~~~ 847 (1466)
++++ +.+++++... ++++..+.+.+|+++++|.||+|+|...+.. + ++..+++++
T Consensus 84 v~i~-~~~v~~i~~~-~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~~~~~G~~~~~~g~~g~~~~~~l~~~l~~~g~~~~ 161 (232)
T 2cul_A 84 LHLF-QATATGLLLE-GNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLGGVVEEAGRLSEASYPDLLEDLSRLGFRFV 161 (232)
T ss_dssp EEEE-ECCEEEEEEE-TTEEEEEEETTSCCEECSEEEECCTTCSSCEEEETTEEESEEETTEECCSHHHHHHHHTTCCEE
T ss_pred cEEE-EeEEEEEEEe-CCEEEEEEECCCCEEECCEEEECCCCChhhceecCCccCCCCCCcccchhhhCHHHHhCCCeEE
Confidence 9999 5789999843 4455667888888999999999999944322 2 223344443
Q ss_pred CCCc---------------EEeCC------CC-CCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhcc
Q psy2951 848 GQKA---------------VVVNE------YL-ETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVE 905 (1466)
Q Consensus 848 ~~G~---------------i~vd~------~~-~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~ 905 (1466)
...+ ..... .+ .|++|+|||+|||+ ... .+..|..||+.+|.+|..
T Consensus 162 ~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~t~~p~iya~G~~a-~~g-----------~~~~~~~~g~~~a~~i~~ 229 (232)
T 2cul_A 162 EREGEVPETPSTPGYRVRYLAFHPEEWEEKTFRLKRLEGLYAVGLCV-REG-----------DYARMSEEGKRLAEHLLH 229 (232)
T ss_dssp EEEEEEC-----CCEEEEEEEECGGGEETTTTEETTSBSEEECGGGT-SCC-----------CHHHHHHHHHHHHHHHHH
T ss_pred ccccccCcCCCCCCccCchhhcccCCCCCccccccccccceeeeecc-cCc-----------cHHHHHHHHHHHHHHHHh
Confidence 2110 11110 12 27899999999999 432 456899999999999964
|
| >2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-12 Score=122.26 Aligned_cols=70 Identities=29% Similarity=0.525 Sum_probs=65.0
Q ss_pred hhhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEEEc
Q psy2951 974 AERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQA 1044 (1466)
Q Consensus 974 ~~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~~~ 1044 (1466)
.+|+++|+.+.|||.+++|..|.+.++.+.||||||+|++++|++...|+..+|+.|++++ .++.++++.
T Consensus 33 ~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fd~~~G~~~~~P~~~~L~~~~v~~-~~g~v~v~~ 102 (103)
T 2qpz_A 33 VEGEIYATDNLCTHGSARMSDGYLEGREIECPLHQGRFDVCTGKALCAPVTQNIKTYPVKI-ENLRVMIDL 102 (103)
T ss_dssp ETTEEEEEESBCSSSSCBGGGSEEETTEEECTTTTCEEETTTCCEEETTCCSCCCEECEEE-ETTEEEEEC
T ss_pred ECCEEEEECCcCCCCCCCCCCCeEeCCEEECCCCCCEEeCCCCCEeCCCCCCCCCEEeEEE-ECCEEEEEc
Confidence 5789999999999999999999999999999999999999999999999988999999998 678888753
|
| >2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.2e-12 Score=123.01 Aligned_cols=70 Identities=31% Similarity=0.613 Sum_probs=65.4
Q ss_pred hhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEEEcc
Q psy2951 975 ERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQAR 1045 (1466)
Q Consensus 975 ~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~~~~ 1045 (1466)
+|+++|+.+.|||.+++|..|.+.++.+.||||||+|++++|++...|+..+|+.|++++ .++.+++...
T Consensus 35 ~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~tG~~~~~P~~~~L~~~~v~~-~~g~v~v~~~ 104 (108)
T 2i7f_A 35 DGEVFVTDNLCTHGNAMLTDGYQDGTIIECPFHGGSFDIATGAAKAFPCQIPIKTYPVTI-EDGWVCIDQP 104 (108)
T ss_dssp TTEEEEEESBCSSSSCBGGGSEEETTEEECSSTTCEEETTTCCBCSTTCCSCCCEECEEE-ETTEEEEECC
T ss_pred CCEEEEEeCcCCCCCCCCCCCEEeCCEEEcCCCCCEEeCCCcCEeCCCCCCCccEEeEEE-ECCEEEEeCC
Confidence 789999999999999999999999999999999999999999999999988999999998 6788888654
|
| >2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.5e-12 Score=121.84 Aligned_cols=70 Identities=30% Similarity=0.578 Sum_probs=65.5
Q ss_pred hhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEEEcc
Q psy2951 975 ERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQAR 1045 (1466)
Q Consensus 975 ~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~~~~ 1045 (1466)
+|+++|+.+.|||.+++|..|.+.++.+.||||||+|++++|+++..|+..+|+.|++++ .++.+++...
T Consensus 36 ~g~~~A~~n~CpH~g~~L~~g~~~~~~i~CP~Hg~~Fdl~tG~~~~~P~~~~L~~~~v~~-~~g~V~v~~~ 105 (115)
T 2de6_D 36 GDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEV-KEGEVYVAGE 105 (115)
T ss_dssp TTEEEEEESBCTTSSCBGGGSEEETTEEECTTTCCEEETTTCCEEETTCCSCCCEEEEEE-SSSEEEEEEE
T ss_pred CCEEEEEeCCCCCCCCCCcCCEEeCCEEECCCCCCEEcCCCcCEeCCCCcCCCCEEEEEE-ECCEEEEecC
Confidence 789999999999999999999999999999999999999999999999988999999998 7888888643
|
| >3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans} | Back alignment and structure |
|---|
Probab=99.27 E-value=2e-12 Score=123.64 Aligned_cols=71 Identities=25% Similarity=0.504 Sum_probs=65.5
Q ss_pred hhhhhhhhcCCCCCCCccccce--eecCCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEEEcc
Q psy2951 974 AERNIYAVGTKCSHYGAPLVKG--SLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQAR 1045 (1466)
Q Consensus 974 ~~g~~~a~~~~C~h~g~~l~~g--~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~~~~ 1045 (1466)
.+|+++|+.+.|||.+++|..| .+.++.+.||||||+|++++|++...|+..+|+.|++++ .++.+++...
T Consensus 40 ~~g~~~A~~n~CpH~g~~L~~G~~~~~~~~i~CP~Hg~~Fdl~tG~~~~~P~~~~L~~~~v~v-~~g~V~v~~~ 112 (121)
T 3gce_A 40 DGDSVYAISNLCSHAEAYLDMGVFHAESLEIECPLHVGRFDVRTGAPTALPCVLPVRAYDVVV-DGTEILVAPK 112 (121)
T ss_dssp ETTEEEEEESBCSSSSCBGGGSEEETTTTEEECTTTCCEEETTTCCEEETTCCSCCCBCCEEE-ETTEEEECCC
T ss_pred ECCEEEEEeCcCCCCCCCCCCCceeecCCEEEcCCCCCEEcCCCccEeCCCCcCCcceEEEEE-ECCEEEEEEC
Confidence 3789999999999999999999 888999999999999999999999999999999999999 6788888643
|
| >1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.3e-12 Score=121.83 Aligned_cols=70 Identities=26% Similarity=0.516 Sum_probs=64.8
Q ss_pred hhhhhhhcCCCCCCCccccce-eecCCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEEEcc
Q psy2951 975 ERNIYAVGTKCSHYGAPLVKG-SLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQAR 1045 (1466)
Q Consensus 975 ~g~~~a~~~~C~h~g~~l~~g-~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~~~~ 1045 (1466)
+|+++|+.+.|||.+++|..| .+.++.+.||||||+|+++||++...|+..+|+.|++++ .++.+++...
T Consensus 36 ~g~~~A~~n~CpH~g~~L~~g~~~~~~~i~CP~Hg~~Fd~~tG~~~~~P~~~~L~~~~v~~-~~g~v~v~~~ 106 (112)
T 1fqt_A 36 DGELFATQDRCTHGDWSLSDGGYLEGDVVECSLHMGKFCVRTGKVKSPPPCEALKIFPIRI-EDNDVLVDFE 106 (112)
T ss_dssp TTEEEEEESBCTTSSCBSSTTCCEETTEEECTTTCCEEETTTCCEEESSCCSCCCBCCEEE-ETTEEEECTT
T ss_pred CCEEEEEECCCCCCCcCCCCCCEEcCCEEECCCCCCEEeCCCCcEeCCCCCCCccEEEEEE-ECCEEEEEec
Confidence 789999999999999999998 888999999999999999999999999988999999998 6888888653
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.9e-12 Score=153.65 Aligned_cols=161 Identities=13% Similarity=0.194 Sum_probs=99.2
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCC-------CCCcc-------chhc-----------------
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY-------DRVKL-------SKQL----------------- 643 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~-------~~~~~-------~~~~----------------- 643 (1466)
.+||+|||||+||+++|+.|+++|.+ |+++|+.+.+.. ..+.+ ...+
T Consensus 4 ~~dViIIGgG~aGl~aA~~la~~G~~--V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (401)
T 2gqf_A 4 YSENIIIGAGAAGLFCAAQLAKLGKS--VTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNW 81 (401)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCC--EEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHH
T ss_pred CCCEEEECCcHHHHHHHHHHHhCCCC--EEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHH
Confidence 47999999999999999999999987 888888754321 01100 0000
Q ss_pred ---------cc--------------CcccccccCHhHhhhCCcEEEEceEEEEec-c----ccccEEEccCCCEEecCEE
Q psy2951 644 ---------DI--------------KADSILLRTEEFYKDNDIHVIKGKKIISDS-E----LNEKKIKLQDGTSIDFTKI 695 (1466)
Q Consensus 644 ---------~~--------------~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~-~----~~~~~v~~~~~~~~~~d~l 695 (1466)
+. ...++...+.+.+++.|++++++++|+.+. + .....+.+.++ ++.+|+|
T Consensus 82 ~~~~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~g-~i~ad~V 160 (401)
T 2gqf_A 82 DFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNST-QWQCKNL 160 (401)
T ss_dssp HHHHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTE-EEEESEE
T ss_pred HHHHHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECCC-EEECCEE
Confidence 00 112222334455667799999999998883 2 22345666555 7999999
Q ss_pred EEcCCCCCCc--------------------CCCCCCCCcEEEecCHHHH-HhhcccCCCCCcEEEEC-------------
Q psy2951 696 YLATGSSPRT--------------------ISQADGVNKVFYLRTVEDA-NNIAPHITPESNVVVIG------------- 741 (1466)
Q Consensus 696 viAtG~~~~~--------------------~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~vvVvG------------- 741 (1466)
|+|||+.+.. |..| +... +.+.+.... ..+.. ...+.++.|+|
T Consensus 161 VlAtG~~s~p~~g~~G~g~~la~~~G~~i~~~~p-~l~~-~~~~~~~~~~~~l~g-~~~~~~~~i~G~~~~~g~~l~t~~ 237 (401)
T 2gqf_A 161 IVATGGLSMPGLGATPFGYQIAEQFGIPVIPPRA-SLVP-FTYRETDKFLTALSG-ISLPVTITALCGKSFYNQLLFTHR 237 (401)
T ss_dssp EECCCCSSCGGGTCCSHHHHHHHHTTCCEEEEEE-ESCC-EECCGGGGGGGGGTT-CEEEEEEEETTSCEEEEEEEECSS
T ss_pred EECCCCccCCCCCCChHHHHHHHHCCCCcccCcc-eeec-eecCCchhhcccCCC-eeeeeEEEEcCCceEEeCEEEECC
Confidence 9999987732 2233 3221 122121111 11211 11134565668
Q ss_pred --CChHHHHHHHHHhccCCeEEE
Q psy2951 742 --SSFIGMEAAAFCASKVKSVTV 762 (1466)
Q Consensus 742 --~G~~g~e~A~~l~~~g~~V~l 762 (1466)
+|+++++++..+++ +.+++|
T Consensus 238 g~sG~~~l~~s~~~~~-~~~~~i 259 (401)
T 2gqf_A 238 GISGPAVLQISNYWQP-TESVEI 259 (401)
T ss_dssp EEESHHHHHHTTTCCT-TCCEEE
T ss_pred CccHHHHHHHHHHHhc-CCEEEE
Confidence 89999999998876 667775
|
| >1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A | Back alignment and structure |
|---|
Probab=99.26 E-value=3.5e-12 Score=120.47 Aligned_cols=73 Identities=27% Similarity=0.399 Sum_probs=65.8
Q ss_pred hhhhhhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEEEcc
Q psy2951 971 AQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQAR 1045 (1466)
Q Consensus 971 ~~~~~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~~~~ 1045 (1466)
++..+|+++|+.+.|||.+++|..|.+.++.+.||||||+|++.||++.. |+..+|+.|++++ .++.+++...
T Consensus 30 ~r~~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fd~~tG~~~~-p~~~~L~~~~v~~-~~g~v~v~~~ 102 (111)
T 1vm9_A 30 VNSEEHGVKAYQAMCPHQEILLSEGSYEGGVITCRAHLWTFNDGTGHGIN-PDDAALAEYPVEV-KGDDIYVSTK 102 (111)
T ss_dssp EEETTTEEEEEESBCSSSSCBGGGSEEETTEEECTTTCCEEETTTCBBSS-SSSCBCCEECEEE-ETTEEEECCT
T ss_pred EEeCCCeEEEEeCcCCCCCcCCCCceEcCCEEEcCCCCCEEeCCCccCCC-CCcCCcCEEEEEE-ECCEEEEecc
Confidence 34447899999999999999999999999999999999999999999998 8888999999998 6888888654
|
| >4aiv_A Probable nitrite reductase [NAD(P)H] small subuni; oxidoreductase, nitrite metabolism; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.9e-12 Score=121.25 Aligned_cols=75 Identities=20% Similarity=0.336 Sum_probs=62.9
Q ss_pred hhhhhhhhhhhhhcCCCCCCCccccceeecCC-----EEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEEE
Q psy2951 969 LAAQFAERNIYAVGTKCSHYGAPLVKGSLGDG-----RVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQ 1043 (1466)
Q Consensus 969 ~~~~~~~g~~~a~~~~C~h~g~~l~~g~~~~~-----~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~~ 1043 (1466)
.+++..+|++||+.+.|||.+++|..|.+.++ .+.||||+|+|+++||++.+.|.. +|++|+++++.+|.+++.
T Consensus 36 ~l~r~~dG~v~A~~n~CpH~ga~L~~~~~~~~~~~~~~i~CP~Hg~~Fdl~tG~~~~~p~~-~l~~ypv~ve~dG~V~V~ 114 (119)
T 4aiv_A 36 ALFRLDDGSVHAVGNVDPFSGAAVMSRGIVGDRGGRAMVQSPILKQAFALDDGSCLDDPRV-SVPVYPARVTPEGRIQVA 114 (119)
T ss_dssp EEEECTTSCEEEEESBCTTTCCBCGGGSEEEEETTEEEEECTTTCCEEETTTCBBSSCTTC-BCCEECEEECTTSEEEEE
T ss_pred EEEEcCCCeEEEEECCCCCCCCccccCceeccccCCCEEECCCCCCEEeCCCCcCcCCCCC-ccceEEEEEEeCCEEEEe
Confidence 34455678999999999999999887655432 599999999999999999998874 789999998678899885
Q ss_pred c
Q psy2951 1044 A 1044 (1466)
Q Consensus 1044 ~ 1044 (1466)
.
T Consensus 115 ~ 115 (119)
T 4aiv_A 115 R 115 (119)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur SUBU; rieske [2Fe-2S] ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A | Back alignment and structure |
|---|
Probab=99.22 E-value=5.4e-12 Score=122.49 Aligned_cols=67 Identities=21% Similarity=0.323 Sum_probs=58.8
Q ss_pred eeCCeEEEEeCCCCCCCcccCC-ceecCCEEEccCCCceEECCCCeeecCCCCCCCCeEEEEE-EcCeEE
Q psy2951 502 STTSNIYAVGTKCSHYGAPLVK-GSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTI-QNDDSV 569 (1466)
Q Consensus 502 ~~~g~~~a~~~~C~H~~~~l~~-g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i-~~~~~~ 569 (1466)
+.+|+++|++|.|||+||+|.+ +..+++.|.||||||+|++ +|++..+|+..+|..+++++ +++.++
T Consensus 71 ~~~g~~~a~~~~C~H~G~~l~~~~~~~~~~~~CP~Hgs~Fd~-~G~~~~gPa~~~L~~~pv~v~~d~~i~ 139 (141)
T 2nwf_A 71 DEAGEWLVMWGVCTHLGCVPIGGVSGDFGGWFCPCHGSHWDS-AGRIRKGPAPENLPIPLAKFIDETTIQ 139 (141)
T ss_dssp STTSCEEEEECCCTTTCCCCEEEEETTTTEEEETTTTEEECT-TSCEEESSCCSCCCBCSEEESSSSEEE
T ss_pred cCCCcEEEEeCcCCCCCeEccccCccCCCEEEcCCCCCEECC-CCCCccCCCCCCCCceeEEEEECCEEE
Confidence 3489999999999999999998 6666679999999999999 79999999989999999998 455554
|
| >1nyk_A Rieske iron-sulfur protein; beta barrel, iron sulfur cluster, electron transport; 1.31A {Thermus thermophilus} SCOP: b.33.1.1 PDB: 3fou_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.1e-11 Score=124.01 Aligned_cols=67 Identities=19% Similarity=0.413 Sum_probs=60.2
Q ss_pred CeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCe-eecCCCCCCCCeEEEEEEcCeEEEE
Q psy2951 505 SNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGD-IEDFPGMDSLPCYKVTIQNDDSVVV 571 (1466)
Q Consensus 505 g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~-~~~~p~~~~l~~~~v~i~~~~~~~~ 571 (1466)
+.++|+++.|||+||+|+.+..+++.|.||||||+|+++||. |..+|+..+|..|+++++++.+|+.
T Consensus 78 ~gv~A~~~~CpH~G~~L~~g~~~~~~i~CP~Hgs~Fd~~tG~~~~~gPa~~~L~~~~v~v~~g~V~v~ 145 (165)
T 1nyk_A 78 EGVVAYSAVCTHLGCIVSQWVADEEAALCPCHGGVYDLRHGAQVIAGPPPRPVPQLPVRVEDGVLVAA 145 (165)
T ss_dssp TTEEEEECBCTTTCCBCCEEEGGGTEEECTTTCCEEEGGGTTEEEESSCSSCCCEECEEEETTEEEEC
T ss_pred CCEEEEEeecCCCCeEcccccCCCCEEECCCCCCEEcCCCCCeeecCCCCCCCcEEEEEEECCEEEEE
Confidence 339999999999999999888888899999999999999885 9999999999999999987777653
|
| >3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3 | Back alignment and structure |
|---|
Probab=99.21 E-value=5.2e-12 Score=120.49 Aligned_cols=73 Identities=23% Similarity=0.328 Sum_probs=64.3
Q ss_pred hhhhhhhhhhhcCCCCCCCc-cccceeecCC----EEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEEEcc
Q psy2951 971 AQFAERNIYAVGTKCSHYGA-PLVKGSLGDG----RVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQAR 1045 (1466)
Q Consensus 971 ~~~~~g~~~a~~~~C~h~g~-~l~~g~~~~~----~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~~~~ 1045 (1466)
++..+|+++|+.+.|||.++ +|..|.+.++ .+.||||||+|++++|++...|+ .+|++|++++ +++.+++...
T Consensus 33 ~r~~~G~~~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fdl~tG~~~~~P~-~~l~~~~v~v-~~g~V~v~~~ 110 (119)
T 3c0d_A 33 FYIPDSGVYAVQDWDPIGKAYVMSRGIVGDINGEMCVASPLYKQHFSLKSGQCLEDEA-HCLKTWRVTV-DDNQVCYLAK 110 (119)
T ss_dssp EEETTTEEEEEESEETTTTEECGGGSEEEESSSSEEEECTTTCCEEETTTCBBSSCTT-CBCCEECEEE-SSSEEEEECC
T ss_pred EEecCCeEEEEeCCCCCCCCccCCCeEEcCCCCCeEEECCCCCCEEECCCCcCCCCCC-ceeeEEEEEE-ECCEEEEEeC
Confidence 34457899999999999999 7999998753 89999999999999999999888 7899999999 7889988654
|
| >1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ... | Back alignment and structure |
|---|
Probab=99.20 E-value=9.8e-12 Score=127.79 Aligned_cols=65 Identities=20% Similarity=0.338 Sum_probs=58.5
Q ss_pred CCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEE-cCeEE
Q psy2951 504 TSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQ-NDDSV 569 (1466)
Q Consensus 504 ~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~-~~~~~ 569 (1466)
+|+++|+++.|||+||+|.++..+++.|.||||||+|++ +|++..+|+..+|..+++++. ++.++
T Consensus 129 ~ge~~a~~~~CtH~G~~l~~~~~~~~~~~CP~HGs~FD~-~G~v~~gPa~~~L~~~p~~v~~d~~I~ 194 (196)
T 1pp9_E 129 KPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDA-SGRIRKGPAPLNLEVPSYEFTSDDMVI 194 (196)
T ss_dssp STTEEEEECCCTTTSCCCEETCSTTSSEEETTTTEEECT-TCCEEESSCCSCCCCCCEEEETTTEEE
T ss_pred CCeEEEEECccCCCCeeccccCCCCCEEEeCCCCCEECC-CCCCccCCCCCCCcceeEEEEECCEEE
Confidence 899999999999999999988877789999999999999 899999999999999999984 44443
|
| >2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3 | Back alignment and structure |
|---|
Probab=99.18 E-value=1.4e-11 Score=116.68 Aligned_cols=72 Identities=15% Similarity=0.246 Sum_probs=62.4
Q ss_pred hhhhhh-hhhhhcCCCCCCCc-cccceeec---CC-EEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEEEc
Q psy2951 971 AQFAER-NIYAVGTKCSHYGA-PLVKGSLG---DG-RVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQA 1044 (1466)
Q Consensus 971 ~~~~~g-~~~a~~~~C~h~g~-~l~~g~~~---~~-~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~~~ 1044 (1466)
++..+| +++|+.+.|||.++ +|..|.+. +. .+.||||||+|+++||++...|+ .+|+.|++++ .++.+++..
T Consensus 34 ~r~~~g~~~~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fd~~tG~~~~~P~-~~l~~~~v~v-~~g~V~v~~ 111 (113)
T 2jo6_A 34 FRPYHSDQVFAISNIDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLSDGLCMEDEQ-FSVKHYEARV-KDGVVQLRG 111 (113)
T ss_dssp EECSSSSCCEEEESSCSSSCCSCSTTSEEEEETTEEEEEETTTTEEEETTTTEETTTTT-TCCCEEEEEE-ETTEEEEEC
T ss_pred EEECCCCEEEEEeCcCCCCCCcccCCeEEeccCCCcEEECCCCCCEEeCCCccCCCCCc-ccccEEeEEE-ECCEEEEEc
Confidence 344478 69999999999999 79999886 23 89999999999999999999887 7899999998 688888864
|
| >1jm1_A Rieske iron-sulfur protein SOXF; electron transport, respiratory chain, oxidoreductase; 1.11A {Sulfolobus acidocaldarius} SCOP: b.33.1.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=4.3e-11 Score=123.87 Aligned_cols=71 Identities=23% Similarity=0.461 Sum_probs=62.0
Q ss_pred eCCeEEEEeCCCCCCCcccCCcee-----------cCCEEEccCCCceEECCCC-eeecCCCCCCCCeEEEEEE--cCeE
Q psy2951 503 TTSNIYAVGTKCSHYGAPLVKGSL-----------GDGRVRCPWHGACFNIATG-DIEDFPGMDSLPCYKVTIQ--NDDS 568 (1466)
Q Consensus 503 ~~g~~~a~~~~C~H~~~~l~~g~~-----------~~~~~~Cp~H~~~f~~~~G-~~~~~p~~~~l~~~~v~i~--~~~~ 568 (1466)
.+|+++|+++.|||+||+|++|.+ .++.+.||||||+||++|| ++..+|+..+|+.|+++++ ++.+
T Consensus 83 ~~g~i~A~~n~CpH~G~~L~~g~~~p~~~~~~~~~~~~~i~CP~Hgs~FDl~tGG~v~~gPa~~~L~~~~v~v~~~~g~v 162 (204)
T 1jm1_A 83 PNGTIFAFSDVCVHLGCQLPAQVIVSSESDPGLYAKGADLHCPCHGSIYALKDGGVVVSGPAPRPLPIVILDYDSSTGDI 162 (204)
T ss_dssp TTTCEEEEESBCTTTCCBCCTTEEESSTTSSEEETTTTEEECTTTCCEEEGGGTSEEEESSCCSCCCBEEEEECTTTCEE
T ss_pred cCCEEEEEeCcCCCCCcCccccccccccccccccCCCCEEECCCCCCEEeCCCCCeEecCCCCCCCCeEeeEEEecCCEE
Confidence 378999999999999999999864 4679999999999999986 9999999889999999987 5677
Q ss_pred EEEEc
Q psy2951 569 VVVQA 573 (1466)
Q Consensus 569 ~~~~~ 573 (1466)
|+...
T Consensus 163 ~v~g~ 167 (204)
T 1jm1_A 163 YAVGT 167 (204)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 76543
|
| >3gcf_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske oxygenase, 2Fe-2S, electron transfer, oxidoreductase; 2.30A {Nocardioides aromaticivorans} | Back alignment and structure |
|---|
Probab=99.16 E-value=4.8e-11 Score=135.04 Aligned_cols=81 Identities=21% Similarity=0.414 Sum_probs=67.5
Q ss_pred CCCCEEEEEeeCCeEEEEeCCCCCCCcccCCce--ecCCEEEccCCCceEECCCCeeecCCC--------CCCCCeEEEE
Q psy2951 493 SSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGS--LGDGRVRCPWHGACFNIATGDIEDFPG--------MDSLPCYKVT 562 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~--~~~~~~~Cp~H~~~f~~~~G~~~~~p~--------~~~l~~~~v~ 562 (1466)
.+.. ++++|.+|+++|++|+|||+|++|+.|. ..++.|+||||||+|++++|+|...|+ ..+|+.|+++
T Consensus 55 ~G~~-VvV~R~dG~v~A~~N~CpHRGa~Ls~G~~~~~~~~I~CPyHGW~Fdl~dG~cv~iP~~p~~~~~~~~~L~~ypV~ 133 (394)
T 3gcf_A 55 LGEK-VLLTRAKGEVKAIADGCAHRGVPFSKEPLCFKAGTVSCWYHGWTYDLDDGRLVDVLTSPGSPVIGKIGIKVYPVQ 133 (394)
T ss_dssp TTEE-EEEEEETTEEEEEESSCTTTCCCGGGSCBCSSTTEEECTTTCEEEETTTCBEEEETTSTTCTTTTSCBCCEECEE
T ss_pred CCEE-EEEEEeCCeEEEeeCcCCCCCCCCcCCcccCcCCEEECCCCCcEEECCCCceeccCCCcccccccccCceEEEEE
Confidence 3344 4455589999999999999999999987 357799999999999999999998765 3468999999
Q ss_pred EEcCeEEEEEcc
Q psy2951 563 IQNDDSVVVQAR 574 (1466)
Q Consensus 563 i~~~~~~~~~~~ 574 (1466)
+.+|.+|+....
T Consensus 134 e~~G~VfV~lgd 145 (394)
T 3gcf_A 134 VAQGVVFVFIGD 145 (394)
T ss_dssp EETTEEEEEESS
T ss_pred EECCcEEEecCC
Confidence 988888877643
|
| >3gkq_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske nonheme iron oxygenase, electron transfer, putidaredoxin-type ferredoxin; 2.10A {Sphingomonas} | Back alignment and structure |
|---|
Probab=99.15 E-value=4.8e-11 Score=134.52 Aligned_cols=79 Identities=19% Similarity=0.346 Sum_probs=66.4
Q ss_pred CEEEEEeeCCeEEEEeCCCCCCCcccCCce--ecCCEEEccCCCceEECCCCeeecCCC--------CCCCCeEEEEEEc
Q psy2951 496 PKTLAQSTTSNIYAVGTKCSHYGAPLVKGS--LGDGRVRCPWHGACFNIATGDIEDFPG--------MDSLPCYKVTIQN 565 (1466)
Q Consensus 496 ~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~--~~~~~~~Cp~H~~~f~~~~G~~~~~p~--------~~~l~~~~v~i~~ 565 (1466)
..++++|.+|+++|++|+|||+|++|+.|. ..++.|+||||||+|++++|+|...|+ ..+|+.|++++.+
T Consensus 54 ~~VvV~R~dG~v~A~~N~CpHRGa~Ls~G~~~~~~~~I~CPyHGW~Fdl~dG~cv~iP~~P~~~~~~~~~L~~ypV~e~~ 133 (389)
T 3gkq_A 54 EKVLLNRVDGVVHAIADRCLHRGVTLSDKVECYSKATISCWYHGWTYRWDNGKLVDILTNPTSVQIGRHALKTYPVREEK 133 (389)
T ss_dssp EEEEEEEETTEEEEEESSCTTTCCCGGGGCCCSBTTEEECTTTCEEEETTTCBEEEETTCTTCTTTTSCBCCBCCEEEET
T ss_pred EEEEEEEeCCeEEEeCCcCCCCCCCccCCcccCcCCEEECCCCCCEEECCCCCeecccCCcccccccccCCcEEEEEEEC
Confidence 344455589999999999999999999987 457799999999999999999998665 3468899999988
Q ss_pred CeEEEEEcc
Q psy2951 566 DDSVVVQAR 574 (1466)
Q Consensus 566 ~~~~~~~~~ 574 (1466)
|.+|+....
T Consensus 134 G~VfV~lgd 142 (389)
T 3gkq_A 134 GLVFLFVGD 142 (389)
T ss_dssp TEEEEEESS
T ss_pred CeEEEecCC
Confidence 888877643
|
| >3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase, oxidoreductase; 1.75A {Stenotrophomonas maltophilia} PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=3.1e-11 Score=139.19 Aligned_cols=81 Identities=25% Similarity=0.373 Sum_probs=68.8
Q ss_pred CCCCEEEEEeeCCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCC-------CCCCCeEEEEEEc
Q psy2951 493 SSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPG-------MDSLPCYKVTIQN 565 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~-------~~~l~~~~v~i~~ 565 (1466)
.+..++++++.+|+++|++|.|||+|++|+.|.++++.|+||||||+|+. +|+|...|+ ..+|+.|++++.+
T Consensus 28 ~g~~vvv~R~~~G~v~a~~n~CpHrg~~L~~G~~~~~~i~CpyHgw~fd~-~G~~~~~P~~~~~~~~~~~l~~~~v~~~~ 106 (349)
T 3gke_A 28 LDTPLALYRQPDGVVAALLDICPHRFAPLSDGILVNGHLQCPYHGLEFDG-GGQCVHNPHGNGARPASLNVRSFPVVERD 106 (349)
T ss_dssp TTEEEEEEECTTSCEEEEESSCTTTCCCGGGCEEETTEEECTTTCCEECT-TCCEEECCSTTCCCCGGGCCCBCCEEEET
T ss_pred CCEEEEEEEcCCCcEEEEeCcCCCCCcCCccCCccceEEEECCCCCEEcC-CCCccccCccccccccccccceeeEEEEC
Confidence 34555555557999999999999999999999999999999999999999 899999984 3478899999988
Q ss_pred CeEEEEEcc
Q psy2951 566 DDSVVVQAR 574 (1466)
Q Consensus 566 ~~~~~~~~~ 574 (1466)
|.+|+....
T Consensus 107 G~V~v~~~~ 115 (349)
T 3gke_A 107 ALIWIWPGD 115 (349)
T ss_dssp TEEEECCSC
T ss_pred CEEEEeeCC
Confidence 877775543
|
| >2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C* | Back alignment and structure |
|---|
Probab=99.15 E-value=4.4e-11 Score=122.74 Aligned_cols=64 Identities=23% Similarity=0.438 Sum_probs=55.7
Q ss_pred CCeEEEEeCCCCCCCcccCCc-eecCCEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCeE
Q psy2951 504 TSNIYAVGTKCSHYGAPLVKG-SLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDS 568 (1466)
Q Consensus 504 ~g~~~a~~~~C~H~~~~l~~g-~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~~ 568 (1466)
+|+++|+++.|||+||+|.++ ..+.+.|.||||||+|++ +|++..+|+..+|..|++++++++.
T Consensus 119 ~g~~~a~~~~C~H~G~~l~~~~~g~~~~~~CP~Hg~~Fd~-~G~~~~gPa~~~L~~~~~~v~~d~~ 183 (187)
T 2qjy_C 119 AGEWLVMWGVCTHLGCSPIGGVSGDFGGWFCPCHGSHYDS-AGRIRKGPAPENLPIPLAKFIDETT 183 (187)
T ss_dssp TCCEEEEECCCTTTSCCCEEEEETTTTEEEETTTTEEECT-TSCEEESSCCSCCCBCSEEEEETTE
T ss_pred CCeEEEEeCccCCCCeECccCcCCCcCEEEeCCCCCEECC-CCeEeCCCCCCCCceEEEEEEeCCE
Confidence 789999999999999999874 333379999999999999 6999999999999999999875433
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=2.8e-11 Score=143.68 Aligned_cols=160 Identities=13% Similarity=0.188 Sum_probs=96.3
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCC-------CCC------CC-chhhcc---------------
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY-------DRV------KL-SKQLDI--------------- 1116 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~-------~~~------~l-~~~~~~--------------- 1116 (1466)
..+|+|||||++|+++|..|++.|. +|+|||+.+.+.. .+. .. .+.+..
T Consensus 4 ~~dViIIGgG~aGl~aA~~la~~G~--~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (401)
T 2gqf_A 4 YSENIIIGAGAAGLFCAAQLAKLGK--SVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNW 81 (401)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTC--CEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHH
T ss_pred CCCEEEECCcHHHHHHHHHHHhCCC--CEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHH
Confidence 3689999999999999999999998 9999999875320 000 00 000000
Q ss_pred -----------C--------------cccccccChhhhccCCcEEEcCCeEEEeecCC----CC--eEEecCCcEEecCe
Q psy2951 1117 -----------K--------------ADSILLRTEEFYKDNDIHVIKGKKIISDSELN----EK--KIKLQDGTSIDFTK 1165 (1466)
Q Consensus 1117 -----------~--------------~~~~~~~~~~~~~~~~v~~~~~~~v~~i~d~~----~~--~v~~~~g~~~~yd~ 1165 (1466)
. ...+.....+.+++.|++++.+++|+++ ..+ .. .|.+.++ ++.+|+
T Consensus 82 ~~~~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i-~~~~~g~~~~~~v~~~~g-~i~ad~ 159 (401)
T 2gqf_A 82 DFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQV-ERIQNDEKVRFVLQVNST-QWQCKN 159 (401)
T ss_dssp HHHHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEE-EECCSCSSCCEEEEETTE-EEEESE
T ss_pred HHHHHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE-EcccCcCCCeEEEEECCC-EEECCE
Confidence 0 0000000112344568999999999998 643 22 4566565 799999
Q ss_pred EEEecCCCCCc--------------------CCCCCCCCcEEEecCHHHH-HhhhcccCCCCeEEEEc------------
Q psy2951 1166 IYLATGSSPRT--------------------ISQADGVNKVFYLRTVEDA-NNIAPHITPESNVVVIG------------ 1212 (1466)
Q Consensus 1166 lvlAtG~~~~~--------------------~~~~~g~~~v~~~~~~~~~-~~l~~~~~~~~~vvVvG------------ 1212 (1466)
||+|||+.+.+ +..| ++.. +.+.+.+.. ..+. ...-..++.|+|
T Consensus 160 VVlAtG~~s~p~~g~~G~g~~la~~~G~~i~~~~p-~l~~-~~~~~~~~~~~~l~-g~~~~~~~~i~G~~~~~g~~l~t~ 236 (401)
T 2gqf_A 160 LIVATGGLSMPGLGATPFGYQIAEQFGIPVIPPRA-SLVP-FTYRETDKFLTALS-GISLPVTITALCGKSFYNQLLFTH 236 (401)
T ss_dssp EEECCCCSSCGGGTCCSHHHHHHHHTTCCEEEEEE-ESCC-EECCGGGGGGGGGT-TCEEEEEEEETTSCEEEEEEEECS
T ss_pred EEECCCCccCCCCCCChHHHHHHHHCCCCcccCcc-eeec-eecCCchhhcccCC-CeeeeeEEEEcCCceEEeCEEEEC
Confidence 99999997742 1122 2211 122111111 1121 111124555558
Q ss_pred ---CCHHHHHHHHHHhcCCCeEEE
Q psy2951 1213 ---SSFIGMEAAAFCASKVKSVTV 1233 (1466)
Q Consensus 1213 ---~g~~g~e~a~~l~~~g~~v~v 1233 (1466)
+|+++++++..+++ |.++++
T Consensus 237 ~g~sG~~~l~~s~~~~~-~~~~~i 259 (401)
T 2gqf_A 237 RGISGPAVLQISNYWQP-TESVEI 259 (401)
T ss_dssp SEEESHHHHHHTTTCCT-TCCEEE
T ss_pred CCccHHHHHHHHHHHhc-CCEEEE
Confidence 89999999999876 677775
|
| >1vf5_D Rieske iron-sulfur protein; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.33.1.1 f.23.12.1 PDB: 2d2c_D* 2e74_D* 2e75_D* 2e76_D* 2zt9_D* | Back alignment and structure |
|---|
Probab=99.13 E-value=4.5e-12 Score=129.97 Aligned_cols=76 Identities=25% Similarity=0.531 Sum_probs=65.6
Q ss_pred CCCCEEEEEeeCCeE--EEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCeEEE
Q psy2951 493 SSTPKTLAQSTTSNI--YAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVV 570 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~--~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~~ 570 (1466)
.++..+++++.+|++ ||+++.|||+||+|.++. +++.|.||||||+|+. +|++..+|+..+|..|+++++++.+++
T Consensus 85 ~g~~~~lv~~~~g~~~~~a~~~~CtH~G~~l~~~~-~~~~~~CP~Hgs~Fd~-~G~~~~gPa~~~L~~~~v~v~~g~v~v 162 (179)
T 1vf5_D 85 KGDPTYIVVESKEAIRDYGINAVCTHLGCVVPWNA-AENKFKCPCHGSQYDE-TGRVIRGPAPLSLALCHATVQDDNIVL 162 (179)
T ss_dssp SSSCEECCBCTTCCBCSCCCBCBCTTTSCBCCBCS-SSSSEECTTTCCEECS-SSCCCSSSCCSCCBCCCCCCSSSSCCC
T ss_pred CCCeEEEEEECCCcEEEEEEeCccCCCCCCCcccC-CCCEEECCCCCCEECC-CCcEecCCCCCCCCeEEEEEECCEEEE
Confidence 446677778888987 999999999999999887 4569999999999998 899999999999999999986666554
|
| >4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species} | Back alignment and structure |
|---|
Probab=99.12 E-value=7.9e-11 Score=118.65 Aligned_cols=81 Identities=21% Similarity=0.356 Sum_probs=68.7
Q ss_pred EeecCchhhhhhhhhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecC-CCccccCCCCCCCCeEEEEEEcCCEE
Q psy2951 962 LTVGMDPLAAQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIA-TGDIEDFPGMDSLPCYKVTIQNDDSV 1040 (1466)
Q Consensus 962 ~~~g~~~~~~~~~~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~-~g~~~~~p~~~~l~~~~v~~~~~~~~ 1040 (1466)
...+......+..+|+++|+.+.|||.+++|..| ..++.+.||||||+|++. +|+++..|+..+|+.|++++++++.+
T Consensus 80 ~R~g~~~~~~r~~~G~v~A~~n~CpH~G~~L~~g-~~~~~i~CP~Hg~~Fd~~~tG~~~~gPa~~~L~~y~v~vd~dG~V 158 (175)
T 4aay_B 80 LKLGTRVEGGVGPDGDIVGFSTICPHKGFPLSYS-ADNKTFNCPGHFSVFDPEKGGQQVWGQATQNLPQYVLRVADNGDI 158 (175)
T ss_dssp EECSSCCTTCBTTTTCEEEEECBCTTTCCBCEEE-TTTTEEECTTTCCEEEGGGTTEEEECSCSSCCCBEEEEECTTSEE
T ss_pred EEcccccccccCCCCEEEEEeCCCCCCCCCCccC-CCCCEEEcCCCCCEECCCCCceEecCCCCCCcCEEEEEEEcCCEE
Confidence 3344444445556889999999999999999998 678999999999999998 99999999999999999999667777
Q ss_pred EEE
Q psy2951 1041 VVQ 1043 (1466)
Q Consensus 1041 ~~~ 1043 (1466)
+..
T Consensus 159 ~av 161 (175)
T 4aay_B 159 FAE 161 (175)
T ss_dssp EEE
T ss_pred EEE
Confidence 653
|
| >3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E* | Back alignment and structure |
|---|
Probab=99.10 E-value=8.1e-11 Score=120.34 Aligned_cols=66 Identities=23% Similarity=0.357 Sum_probs=55.0
Q ss_pred CCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCeEEE
Q psy2951 504 TSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVV 570 (1466)
Q Consensus 504 ~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~~ 570 (1466)
+++++|+++.|||+||.+.+...+++.|.||||||+||+ +|++..+|+..+|..++.+++++.+++
T Consensus 119 ~g~~~a~~~iCtHlGc~p~~~~~~~~~~~CPcHGs~FD~-~G~v~~gPa~~~L~v~p~~v~~~~I~v 184 (185)
T 3cx5_E 119 DPQWLIMLGICTHLGCVPIGEAGDFGGWFCPCHGSHYDI-SGRIRKGPAPLNLEIPAYEFDGDKVIV 184 (185)
T ss_dssp STTEEEEECCCTTTSCCCEEEETTTTEEEETTTTEEECT-TCCEEESSCCSCCCCCCEEEETTEEEE
T ss_pred CCeEEEEecccCCCCceeccCCCCCCEEEcCCCCCEECC-CCCEecCCCCCCcceEEEEEECCEEEE
Confidence 589999999999999964333335579999999999999 899999999889988888886665553
|
| >2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.10 E-value=9.4e-11 Score=137.00 Aligned_cols=79 Identities=16% Similarity=0.303 Sum_probs=68.7
Q ss_pred CCCCEEEEEeeCCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCC------CCCCeEEEEEEcC
Q psy2951 493 SSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGM------DSLPCYKVTIQND 566 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~------~~l~~~~v~i~~~ 566 (1466)
.+..++++++.+|+++|++|.|||+|++|+.|.++++.|+||||||+|+. +|+|...|+. .+++.|++++.+|
T Consensus 46 ~g~~vvl~R~~~G~v~a~~n~CpHrga~L~~g~~~~~~i~CpyHgw~f~~-~G~~~~~P~~~~~~~~~~l~~~~v~~~~G 124 (386)
T 2zyl_A 46 FGTKLVVFADSHGDLKVLDGYCRHMGGDLSEGTVKGDEVACPFHDWRWGG-DGRCKLVPYARRTPRMARTRSWTTDVRSG 124 (386)
T ss_dssp TTEEEEEEECTTSCEEEEESBCTTTCCBGGGSEEETTEEECTTTCCEEET-TSBEEECTTCSSCCTTCBCCEECEEEETT
T ss_pred CCeEEEEEECCCCCEEEEcCcCCCCCCCCCCCcccCCEEEeCCCCCEECC-CCCccccCcccccCcccCcceEeEEEECC
Confidence 33555666667999999999999999999999998899999999999999 7999999874 4689999999888
Q ss_pred eEEEEE
Q psy2951 567 DSVVVQ 572 (1466)
Q Consensus 567 ~~~~~~ 572 (1466)
.+|+..
T Consensus 125 ~v~v~~ 130 (386)
T 2zyl_A 125 LLFVWH 130 (386)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 888765
|
| >2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3 | Back alignment and structure |
|---|
Probab=99.10 E-value=5e-11 Score=115.47 Aligned_cols=75 Identities=17% Similarity=0.245 Sum_probs=64.1
Q ss_pred hhhhhh-hhhhhcCCCCCCCc-cccceeec---CC-EEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEEEc
Q psy2951 971 AQFAER-NIYAVGTKCSHYGA-PLVKGSLG---DG-RVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQA 1044 (1466)
Q Consensus 971 ~~~~~g-~~~a~~~~C~h~g~-~l~~g~~~---~~-~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~~~ 1044 (1466)
++..+| +++|+.+.|||.++ +|..|.+. ++ .+.||||||+|+++||++...|+ .+|++|++++ .++.+++..
T Consensus 31 ~r~~~g~~v~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fdl~tG~~~~~P~-~~L~~~~v~v-~~g~V~V~~ 108 (130)
T 2jza_A 31 FRPRNDEQVYAISNIDPFAQASVLSRGIVAEHQDDLWVASPLKKQHFRLYDGFCLEDGA-YSVAAYDTQV-TNGNVQISI 108 (130)
T ss_dssp EBCSSSSCCEEEBCCCTTTSSGGGTSSEEEESSSSEEEECSSSCCEEETTTCCBSSCCS-SCCBCCCEEE-SSSEEEEEC
T ss_pred EEECCCCEEEEEeCcCCCCCCCcCCCccCcccCCCeEEECCCCCCEEeCCCcCCCCCCc-CcceEEEEEE-ECCEEEEEe
Confidence 343356 89999999999999 59999885 33 89999999999999999999887 7899999998 789999976
Q ss_pred chh
Q psy2951 1045 RKD 1047 (1466)
Q Consensus 1045 ~~~ 1047 (1466)
...
T Consensus 109 ~~~ 111 (130)
T 2jza_A 109 ADS 111 (130)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
|
| >1rie_A Rieske iron-sulfur protein; oxidoreductase, cytochrome BC1 complex, histidine ligands, rieske iron-sulfur cluster, electron transport; 1.50A {Bos taurus} SCOP: b.33.1.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=2.9e-11 Score=116.49 Aligned_cols=70 Identities=23% Similarity=0.380 Sum_probs=62.3
Q ss_pred hhhhhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEE
Q psy2951 972 QFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVV 1042 (1466)
Q Consensus 972 ~~~~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~ 1042 (1466)
+..+|+++|+.+.|||.|++|..|...++.+.||||||+||+ +|++...|+..+|+.|++++.+++.+++
T Consensus 59 r~~~g~~~a~~~~C~H~g~~l~~g~~~~~~i~CP~Hg~~fd~-~G~~~~~P~~~~l~~~~v~v~~~~~v~v 128 (129)
T 1rie_A 59 RVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDA-SGRIRKGPAPLNLEVPSYEFTSDDMVIV 128 (129)
T ss_dssp TCSSTTEEEEECCCTTTSCCCEETCTTTEEEEETTTTEEEET-TCCEEESSCCSCCCCCCEEESSSSEEEE
T ss_pred cccCCeEEEEECccCCCCeecccccCCCCEEEcCCCCCEEcC-CCCEeeCCCCCCCCceeEEEEeCCEEEE
Confidence 334789999999999999999999887889999999999998 9999999999999999999855666665
|
| >3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A | Back alignment and structure |
|---|
Probab=99.04 E-value=2.9e-10 Score=132.70 Aligned_cols=80 Identities=14% Similarity=0.228 Sum_probs=68.0
Q ss_pred CCCCEEEEEeeCCeEEEEeCCCCCCCcccC-CceecCCEEEccCCCceEECCCCeeecCCCC--------CCCCeEEEEE
Q psy2951 493 SSTPKTLAQSTTSNIYAVGTKCSHYGAPLV-KGSLGDGRVRCPWHGACFNIATGDIEDFPGM--------DSLPCYKVTI 563 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~-~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~--------~~l~~~~v~i 563 (1466)
++..++++++.+|+++|++|.|||+|++|+ .|...++.|+||||||+|++ +|+|...|+. .+|+.|++++
T Consensus 65 ~g~~vvv~R~~dG~v~A~~n~CpHrga~L~~~g~~~~~~i~CPyHgw~fdl-dG~~~~~P~~~~~~~~~~~~L~~~~v~~ 143 (412)
T 3vca_A 65 GAYEVVIVRSRDGEVRAFHNSCRHRGSLICKARQGQVAKLVCPYHQWTYEL-DGKLIWANDMGPDFDASKYGLKPVNLRN 143 (412)
T ss_dssp TTEEEEEEECTTSCEEEEESSCTTTCCCSCCSSEEECSSEECTTTCCEECT-TSCEEECTTCCTTCCGGGCSCCEEEEEE
T ss_pred CCEEEEEEEcCCCCEEEecccCCCCCCEeecccccCCCEEEcCCCCCEEcC-CCccccCCccccccCcccCCCcEEEEEE
Confidence 445566666678999999999999999997 78888889999999999999 7999998864 3689999999
Q ss_pred EcCeEEEEEc
Q psy2951 564 QNDDSVVVQA 573 (1466)
Q Consensus 564 ~~~~~~~~~~ 573 (1466)
.+|.+|+...
T Consensus 144 ~~G~V~v~~~ 153 (412)
T 3vca_A 144 LDGLIYICLS 153 (412)
T ss_dssp ETTEEEEECS
T ss_pred ECCEEEEEec
Confidence 8888877543
|
| >3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP} | Back alignment and structure |
|---|
Probab=99.03 E-value=3.7e-10 Score=131.73 Aligned_cols=80 Identities=16% Similarity=0.251 Sum_probs=67.8
Q ss_pred CCCCEEEEEeeCCeEEEEeCCCCCCCcccCC-ceecCCEEEccCCCceEECCCCeeecCCCC--------CCCCeEEEEE
Q psy2951 493 SSTPKTLAQSTTSNIYAVGTKCSHYGAPLVK-GSLGDGRVRCPWHGACFNIATGDIEDFPGM--------DSLPCYKVTI 563 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~-g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~--------~~l~~~~v~i 563 (1466)
++..++++++.+|+++|++|.|||+|++|+. |...++.|+||||||+|+. +|+|...|+. .+|+.|++++
T Consensus 63 ~g~~vvv~R~~dG~v~A~~n~C~Hrga~L~~~g~~~~~~i~CpyHgw~fd~-dG~~~~~P~~~~~~~~~~~~L~~~~v~~ 141 (409)
T 3n0q_A 63 GNYNVIIVRGADNVIRAFHNACRHRGSVICKAKKGNNPKLVCPYHQWTYEL-DGRLLWARDMGPDFEPSRHGLKTVHCRE 141 (409)
T ss_dssp TTEEEEEEECTTSCEEEEESCCTTTCCCSCCSSEEECSSEECTTTCCEECT-TSCEEECTTCCTTCCGGGCSCCEEEEEE
T ss_pred CCEEEEEEEcCCCCEEeecCcCCcCcCCccCcCccCCCEEEECCCCCEEeC-CCCcccCCcCCcccCcccCCCceEEEEE
Confidence 4455666666799999999999999999986 8888889999999999999 7999998864 3789999999
Q ss_pred EcCeEEEEEc
Q psy2951 564 QNDDSVVVQA 573 (1466)
Q Consensus 564 ~~~~~~~~~~ 573 (1466)
.+|.+|+...
T Consensus 142 ~~G~Vfv~~~ 151 (409)
T 3n0q_A 142 LAGLIYICLA 151 (409)
T ss_dssp ETTEEEEECS
T ss_pred ECCEEEEEeC
Confidence 8888877643
|
| >2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2 d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=4.3e-10 Score=132.36 Aligned_cols=79 Identities=15% Similarity=0.266 Sum_probs=65.9
Q ss_pred CCCEEEEEeeCCeEEEEeCCCCCCCcccCCcee--cCCEEEccCCCceEECCCCeeecCCCC--------CCCCeEEEEE
Q psy2951 494 STPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSL--GDGRVRCPWHGACFNIATGDIEDFPGM--------DSLPCYKVTI 563 (1466)
Q Consensus 494 ~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~--~~~~~~Cp~H~~~f~~~~G~~~~~p~~--------~~l~~~~v~i 563 (1466)
+..+++++ .+|+++|++|.|||+|++|+.|.+ .++.|+||||||+|+.++|+|...|+. .+|+.|++++
T Consensus 50 g~~vvl~R-~~G~v~a~~n~CpHrga~L~~g~~~~~~~~i~CpyHgw~f~~~~G~~~~~p~~p~~~~~~~~~l~~~~v~~ 128 (392)
T 2de6_A 50 GENLLVNR-IDGKLYCLKDRCLHRGVQLSVKVECKTKSTITCWYHAWTYRWEDGVLCDILTNPTSAQIGRQKLKTYPVQE 128 (392)
T ss_dssp TEEEEEEE-ETTEEEEEESSCTTTCCCGGGGCCCCSTTEEECTTTCEEEETTTCBEEEETTCTTCTTTTSCBCCBCCEEE
T ss_pred CEEEEEEE-eCCEEEEEeCcCCCCCCCCcCCcccCCCCEEEeCCCCCEEcCCCCccccccCCccccccccCCCceEeEEE
Confidence 35555555 799999999999999999999986 357999999999999988999987542 3688999999
Q ss_pred EcCeEEEEEc
Q psy2951 564 QNDDSVVVQA 573 (1466)
Q Consensus 564 ~~~~~~~~~~ 573 (1466)
.+|.+|+...
T Consensus 129 ~~G~v~v~~~ 138 (392)
T 2de6_A 129 AKGCVFIYLG 138 (392)
T ss_dssp ETTEEEEEES
T ss_pred ECCEEEEEeC
Confidence 8888887664
|
| >1g8k_B Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.33.1.1 PDB: 1g8j_B* | Back alignment and structure |
|---|
Probab=98.98 E-value=2.9e-10 Score=110.21 Aligned_cols=69 Identities=20% Similarity=0.354 Sum_probs=61.0
Q ss_pred hhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecC-CCccccCCCCCCCCeEEEEEEc-CCEEEEEc
Q psy2951 975 ERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIA-TGDIEDFPGMDSLPCYKVTIQN-DDSVVVQA 1044 (1466)
Q Consensus 975 ~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~-~g~~~~~p~~~~l~~~~v~~~~-~~~~~~~~ 1044 (1466)
+|+++|+.+.|||.+++|.. ...++.+.||||||+|+++ +|++...|+..+|+.|+++++. ++.+++..
T Consensus 50 ~g~~~A~~n~CpH~g~~L~~-~~~~~~i~CP~Hg~~Fd~~~~G~~~~gP~~~~L~~~~v~v~~~g~~V~v~g 120 (133)
T 1g8k_B 50 DDDIVAYSVLCTHMGCPTSY-DSSSKTFSCPCHFTEFDAEKAGQMICGEATADLPRVLLRYDAASDALTAVG 120 (133)
T ss_dssp TTCEEEEECBCTTTCCBCEE-ETTTTEEECTTTCCEEEGGGTTEEEESSCSSCCCEEEEEEETTTTEEEEEE
T ss_pred CCEEEEEeCcCCCCCCCCCc-ccCCCEEECCCCCCEECCCCCCCEEcCCCCCCCCEEEEEEECCCCEEEEEe
Confidence 78999999999999999987 3567999999999999998 9999999999999999999964 56677654
|
| >1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component; rieske center, oxygen binding/activation, substrate bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2 d.129.3.3 PDB: 1z02_A 1z03_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=6.7e-10 Score=132.70 Aligned_cols=81 Identities=21% Similarity=0.416 Sum_probs=66.9
Q ss_pred CCCCEEEEEeeCCeEEEEeCCCCCCCcccCCcee--cCCEEEccCCCceEECCCCeeecCCC--------CCCCCeEEEE
Q psy2951 493 SSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSL--GDGRVRCPWHGACFNIATGDIEDFPG--------MDSLPCYKVT 562 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~--~~~~~~Cp~H~~~f~~~~G~~~~~p~--------~~~l~~~~v~ 562 (1466)
.+..+++ ++.+|+++|++|.|||+|++|+.|.+ .++.|+||||||+|++.+|+|...|+ ..+|+.|+++
T Consensus 64 ~g~~vvl-~r~~G~v~a~~n~CpHrga~L~~g~~~~~~~~i~CpyHgw~fd~~~G~~~~~p~~p~~~~~~~~~l~~~~v~ 142 (446)
T 1z01_A 64 CGVPIVL-RRVNGKVFALKDQCLHRGVRLSEKPTCFTKSTISCWYHGFTFDLETGKLVTIVANPEDKLIGTTGVTTYPVH 142 (446)
T ss_dssp TTEEEEE-EEETTEEEEEESSCTTTCCCGGGSCCCSSTTEEECTTTCEEEETTTCBEEEETTCTTCTTTTSCBCCEECEE
T ss_pred CCEEEEE-EEeCCEEEEEeCcCCCCcCCCCCCccCCCCCEEEeCCCCeEEeCCCCCccccCCCccccCcccCCCcEEEEE
Confidence 3344554 45899999999999999999999974 56899999999999998899998754 2468999999
Q ss_pred EEcCeEEEEEcc
Q psy2951 563 IQNDDSVVVQAR 574 (1466)
Q Consensus 563 i~~~~~~~~~~~ 574 (1466)
+.+|.+|+....
T Consensus 143 ~~~G~V~v~~~~ 154 (446)
T 1z01_A 143 EVNGMIFVFVRE 154 (446)
T ss_dssp EETTEEEEEECC
T ss_pred EECCEEEEEeCC
Confidence 988888876543
|
| >1rfs_A Rieske protein; iron-sulfur protein, electron transport; 1.83A {Spinacia oleracea} SCOP: b.33.1.1 PDB: 1q90_C* | Back alignment and structure |
|---|
Probab=98.98 E-value=4.1e-10 Score=109.67 Aligned_cols=69 Identities=22% Similarity=0.491 Sum_probs=61.6
Q ss_pred hhhhhh--hhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEEEc
Q psy2951 973 FAERNI--YAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQA 1044 (1466)
Q Consensus 973 ~~~g~~--~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~~~ 1044 (1466)
..+|++ +|+.+.|||.+++|..+. .++.+.||||||+|+ .+|++...|+..+|+.|++++ .++.+++..
T Consensus 53 ~~~G~i~~~A~~n~CpH~g~~L~~g~-~~~~i~CP~Hg~~Fd-~tG~~~~~P~~~~L~~~~v~v-~~g~V~V~~ 123 (139)
T 1rfs_A 53 ESDKTLATFGINAVCTHLGCVVPFNA-AENKFICPCHGSQYN-NQGRVVRGPAPLSLALAHCDV-DDGKVVFVP 123 (139)
T ss_dssp CTTSSBCSEEEECBCTTTCCBCCEET-TTTEEECTTTCCEEE-TTCCEEESSCCSCCCEEEEEE-ETTEEEEEE
T ss_pred eCCCcEEEEEEeCcCCCCCCCCccCC-CCCEEEcCCCCCEEC-CCCCCccCCCCCCCCEEEEEE-ECCEEEEEe
Confidence 346777 999999999999999887 578999999999999 599999999989999999999 678888864
|
| >2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A | Back alignment and structure |
|---|
Probab=98.97 E-value=9.4e-10 Score=132.07 Aligned_cols=80 Identities=18% Similarity=0.275 Sum_probs=65.6
Q ss_pred CCCCCEEEEEeeCCeEEEEeCCCCCCCcccCCcee-cCCEEEccCCCceEECCCCeeecCCCCC------------CCCe
Q psy2951 492 ASSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSL-GDGRVRCPWHGACFNIATGDIEDFPGMD------------SLPC 558 (1466)
Q Consensus 492 ~~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~-~~~~~~Cp~H~~~f~~~~G~~~~~p~~~------------~l~~ 558 (1466)
.++..++++++.+|+++|++|.|||+|++|++|.. .++.|+||||||+|+. +|+|...|+.. +|+.
T Consensus 58 ~~~~~vvv~R~~~G~v~a~~n~CpHrga~L~~g~~g~~~~i~CpyHgw~f~~-~G~~~~~P~~~~~~~~~~~~~~~~l~~ 136 (454)
T 2gbw_A 58 MAEDKVILSHQSDGTFRAFINSCSHRGNQICHADSGNAKAFVCNYHGWVFGQ-DGSLVDVPLESRCYHNSLDKQKLAAKS 136 (454)
T ss_dssp ETTEEEEEEECTTSCEEEEESSCTTTCCCSCCCSEEECSEEECTTTCCEEET-TSCEEECTTTTTTTTTCCCGGGCCCCE
T ss_pred ECCeEEEEEEcCCCCEEEEeccCCCCCCCCcccccCCcCEEEeCCCCCEecC-CCCcccCCcccccccccCCHhhCCCee
Confidence 34344555555799999999999999999998876 5679999999999999 69999988753 4788
Q ss_pred EEEEEEcCeEEEEE
Q psy2951 559 YKVTIQNDDSVVVQ 572 (1466)
Q Consensus 559 ~~v~i~~~~~~~~~ 572 (1466)
+++++.+|.+|+..
T Consensus 137 ~~v~~~~G~v~v~~ 150 (454)
T 2gbw_A 137 VRVETYKGFIFGCH 150 (454)
T ss_dssp EEEEEETTEEEEEC
T ss_pred EEEEEECCEEEEEe
Confidence 99998888777653
|
| >3azc_A Cytochrome B6-F complex iron-sulfur subunit; rieske, thermosynechococcus elongatu photosynthesis, electron transport; 2.00A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.51 E-value=6.6e-11 Score=113.05 Aligned_cols=78 Identities=24% Similarity=0.458 Sum_probs=65.9
Q ss_pred cCchhhhhhhhhh--hhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEE
Q psy2951 965 GMDPLAAQFAERN--IYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVV 1042 (1466)
Q Consensus 965 g~~~~~~~~~~g~--~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~ 1042 (1466)
+...++++..+|+ ++|+.+.|||.+++|..|. .++.+.||||||+|+ .+|+++..|+..+|+.|+++++.++.+++
T Consensus 39 g~~~vlv~~~~G~~~v~A~~n~CpH~g~~L~~g~-~~~~i~CP~Hg~~Fd-~tG~~~~~P~~~~L~~ypv~v~~~g~V~V 116 (133)
T 3azc_A 39 GDPTYVIVTEDHQIANYGLNAVCTHLGCVVPWNV-SENKFICPCHGSQYD-STGKVVRGPAPLSLALVKATVTEDDKLVF 116 (133)
Confidence 3334445556777 9999999999999999887 678999999999999 99999999998899999999856777777
Q ss_pred Ec
Q psy2951 1043 QA 1044 (1466)
Q Consensus 1043 ~~ 1044 (1466)
..
T Consensus 117 ~~ 118 (133)
T 3azc_A 117 TP 118 (133)
Confidence 53
|
| >3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.4e-10 Score=115.03 Aligned_cols=75 Identities=25% Similarity=0.427 Sum_probs=61.5
Q ss_pred hhhhhhhhhhhhcCCCCCCCccccceeecC----CEEEcCCCCceeecCCCcccc---CC----CC-------CCCCeEE
Q psy2951 970 AAQFAERNIYAVGTKCSHYGAPLVKGSLGD----GRVRCPWHGACFNIATGDIED---FP----GM-------DSLPCYK 1031 (1466)
Q Consensus 970 ~~~~~~g~~~a~~~~C~h~g~~l~~g~~~~----~~~~cp~h~~~f~~~~g~~~~---~p----~~-------~~l~~~~ 1031 (1466)
+++ .+|+++|+.+.|||.+++|..|.+.+ +.+.||||||+|++++|+++. .| +. .+|+.|+
T Consensus 43 v~r-~~G~v~A~~n~CpH~g~~L~~G~~~~~~g~~~i~CP~Hgw~Fdl~tG~~~~~~i~P~~~~~~~~~~~~~~~L~~~~ 121 (157)
T 3d89_A 43 IFY-HKGEYHAMDIRCYHSGGPLHLGEIEDFNGQSCIVCPWHKYKITLATGEGLYQSINPKDPSAKPKWCSKGVKQRIHT 121 (157)
T ss_dssp EEE-ETTEEEEEESBCTTTCCBGGGSEEEEETTEEEEECTTTCCEEETTTCEEEEEECCCC-----CEEEEEEECSCEEE
T ss_pred EEE-ECCEEEEEeCCCCCCCCCCcCCEecCcCCCCEEECCCCCCEEecCCcCEEEeccCCCccccccccccccCcceEEE
Confidence 344 47899999999999999999998864 689999999999999999874 13 22 3689999
Q ss_pred EEEEcCCEEEEEcch
Q psy2951 1032 VTIQNDDSVVVQARK 1046 (1466)
Q Consensus 1032 v~~~~~~~~~~~~~~ 1046 (1466)
+++ .++.++++...
T Consensus 122 v~v-~~G~V~V~~~~ 135 (157)
T 3d89_A 122 VKV-DNGNIYVTLSK 135 (157)
T ss_dssp EEE-ETTEEEEECCC
T ss_pred EEE-ECCEEEEEeCC
Confidence 998 68888887653
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 | Back alignment and structure |
|---|
Probab=98.94 E-value=1.6e-09 Score=122.46 Aligned_cols=166 Identities=17% Similarity=0.157 Sum_probs=115.0
Q ss_pred CeEEEEcCCHHHHHHHHHHhcC-CCeEEEEcCCCcCCcc------------------------------------c-ccH
Q psy2951 1206 SNVVVIGSSFIGMEAAAFCASK-VKSVTVVGRGAVPFQE------------------------------------S-LGK 1247 (1466)
Q Consensus 1206 ~~vvVvG~g~~g~e~a~~l~~~-g~~v~vv~~~~~~~~~------------------------------------~-~~~ 1247 (1466)
.+|+|||+|++|+.+|..|++. |.+|+++++.+.+... . ...
T Consensus 40 ~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 119 (284)
T 1rp0_A 40 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAA 119 (284)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCHH
T ss_pred cCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEEEecCHH
Confidence 4799999999999999999997 9999999988644210 0 123
Q ss_pred HHHHHHHHHHHh-CCcEEEcCceEEEEEecCCCcEEEEEcC---------CC-----CeeecCEEEEeeccccCcc----
Q psy2951 1248 EVGERITKLFES-KGVKFVMKANVSSFEKNEKNDVTAANLD---------NG-----TTIPADLVIVGIGTVLNTN---- 1308 (1466)
Q Consensus 1248 ~~~~~l~~~~~~-~gv~~~~~~~v~~i~~~~~g~~~~v~l~---------~g-----~~i~~D~vv~a~G~~p~~~---- 1308 (1466)
++...+.+.+.+ .||+++++++|+++. .+++++..|.+. +| .++++|.||+|+|..+...
T Consensus 120 ~~~~~l~~~~~~~~gv~i~~~~~V~~i~-~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~~~~~~ 198 (284)
T 1rp0_A 120 LFTSTIMSKLLARPNVKLFNAVAAEDLI-VKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATGV 198 (284)
T ss_dssp HHHHHHHHHHHTSTTEEEEETEEEEEEE-EETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTTTTHHH
T ss_pred HHHHHHHHHHHhcCCCEEEcCcEEEEEE-ecCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHHHHHHH
Confidence 455556666655 699999999999998 445566566552 32 5789999999999877643
Q ss_pred -ccccCC--ceeeCCCeEEeCC-------CccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcC
Q psy2951 1309 -YLDGKG--VELNGQKAVVVNE-------YLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVE 1376 (1466)
Q Consensus 1309 -~~~~~g--l~~~~~G~i~vd~-------~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g 1376 (1466)
++...+ +.+....++.+|. ..+++.|++|++||++... .|.+.....|..+..||+.+|.++..
T Consensus 199 ~~~~~~g~~~~v~~~~g~~~~~~~~~~v~~~~~~~p~i~a~G~~~~~~----~g~~~~gp~~~~~~~sG~~~a~~i~~ 272 (284)
T 1rp0_A 199 KRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEI----DGAPRMGPTFGAMMISGQKAGQLALK 272 (284)
T ss_dssp HHHHHTTSSSCCCCCEEECHHHHHHHHHHHCEEEETTEEECTHHHHHH----HTCEECCSCCHHHHHHHHHHHHHHHH
T ss_pred HHhhhccCCCCcCCcCCchhhhhhHHHhhccccccCCEEEEeeehhhh----cCCCCcChHHHHHHHhHHHHHHHHHH
Confidence 121112 1222222343332 3456789999999986431 12233334689999999999999985
|
| >2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=9.2e-10 Score=132.03 Aligned_cols=79 Identities=15% Similarity=0.214 Sum_probs=65.0
Q ss_pred CCCCCEEEEEeeCCeEEEEeCCCCCCCcccCCcee-cCCEEEccCCCceEECCCCeeecCCCC------------CCCCe
Q psy2951 492 ASSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSL-GDGRVRCPWHGACFNIATGDIEDFPGM------------DSLPC 558 (1466)
Q Consensus 492 ~~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~-~~~~~~Cp~H~~~f~~~~G~~~~~p~~------------~~l~~ 558 (1466)
.++..++++++.+|+++|++|.|||+|++|+.|.. .++.++||||||+|+. +|+|...|+. .+|+.
T Consensus 57 ~~~~~vvv~R~~~G~v~a~~n~CpHrga~L~~g~~g~~~~l~CpyHgw~f~~-~G~~~~~P~~~~~~~~~~~~~~~~l~~ 135 (447)
T 2bmo_A 57 MGVDEVIVSRQNDGSVRAFLNVCRHRGKTLVHAEAGNAKGFVCGYHGWGYGS-NGELQSVPFEKELYGDAIKKKCLGLKE 135 (447)
T ss_dssp ETTEEEEEEECTTSCEEEEESBCTTTCCBCCCSSEEECSEEECTTTCCEEET-TSCEEECTTHHHHTGGGCCGGGCCCCB
T ss_pred ECCeeEEEEECCCCCEEEEeccCcCCCCCccccccCCcCeEECCCCcchhcC-CCcccccCcccccccccCCHhHCCCcc
Confidence 34444556666799999999999999999998876 4679999999999999 7999998863 26888
Q ss_pred EE-EEEEcCeEEEE
Q psy2951 559 YK-VTIQNDDSVVV 571 (1466)
Q Consensus 559 ~~-v~i~~~~~~~~ 571 (1466)
|+ +++.+|.+|++
T Consensus 136 ~~~v~~~~G~v~v~ 149 (447)
T 2bmo_A 136 VPRIESFHGFIYGC 149 (447)
T ss_dssp CSEEEEETTEEEEE
T ss_pred cceEEEECCEEEEE
Confidence 97 98877777765
|
| >2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=7.6e-09 Score=125.96 Aligned_cols=146 Identities=9% Similarity=0.084 Sum_probs=94.5
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC-CCCCCCCccc----------hh---cc----------------
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN-FLPYDRVKLS----------KQ---LD---------------- 644 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~-~~~~~~~~~~----------~~---~~---------------- 644 (1466)
.+||+|||||+||++||..|++.|.+ |+++|+.. .++...+... .. +.
T Consensus 27 ~yDVIVIGgG~AGl~AAlalAr~G~k--VlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f~~ 104 (637)
T 2zxi_A 27 EFDVVVIGGGHAGIEAALAAARMGAK--TAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKM 104 (637)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCC--EEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEEEE
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCC--EEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccceee
Confidence 58999999999999999999999988 77787763 1111111000 00 00
Q ss_pred ---------------cCcccccccCHhHhhh-CCcEEEEceEEEEecccccc--EEEccCCCEEecCEEEEcCCCCCCcC
Q psy2951 645 ---------------IKADSILLRTEEFYKD-NDIHVIKGKKIISDSELNEK--KIKLQDGTSIDFTKIYLATGSSPRTI 706 (1466)
Q Consensus 645 ---------------~~~~~~~~~~~~~~~~-~gv~~~~~~~v~~i~~~~~~--~v~~~~~~~~~~d~lviAtG~~~~~~ 706 (1466)
.+...+...+.+.+++ .|++++. ++|+.+...+.. .|.+.+|..+.+|+||+|||+.+..+
T Consensus 105 l~~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~~-~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVLATG~~s~~~ 183 (637)
T 2zxi_A 105 LNTRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIKQ-EEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFLNGV 183 (637)
T ss_dssp ESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEE-SCEEEEEESSSBEEEEEETTSCEEECSEEEECCTTCBTCE
T ss_pred cccccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEEE-eEEEEEEecCCEEEEEEECCCcEEEeCEEEEccCCCccCc
Confidence 0001112223344555 4999965 458887222222 36777888999999999999988877
Q ss_pred CCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEee
Q psy2951 707 SQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGR 765 (1466)
Q Consensus 707 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~ 765 (1466)
.++ |.... . +.+ .|+.+++++|..|.+.|.+++.+.+
T Consensus 184 ~~~-G~~~~-~----------------~Gr----~G~~~A~~la~~L~~lG~~v~~l~t 220 (637)
T 2zxi_A 184 IYI-GDKMI-P----------------GGR----LGEPRSEGLSDFYRRFDFPLIRFKT 220 (637)
T ss_dssp EEE-TTEEE-E----------------CSB----TTBCCBCTHHHHHHHTTCCCEEEEE
T ss_pred eec-cceec-C----------------CCC----CCchhHHHHHHHHHhcCCceEEecC
Confidence 777 65411 0 222 2356789999999999988776653
|
| >1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A | Back alignment and structure |
|---|
Probab=98.89 E-value=1.3e-09 Score=130.82 Aligned_cols=79 Identities=14% Similarity=0.241 Sum_probs=64.4
Q ss_pred CCCCCEEEEEeeCCeEEEEeCCCCCCCcccCCcee-cCCEEEccCCCceEECCCCeeecCCCC-----------CCCCeE
Q psy2951 492 ASSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSL-GDGRVRCPWHGACFNIATGDIEDFPGM-----------DSLPCY 559 (1466)
Q Consensus 492 ~~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~-~~~~~~Cp~H~~~f~~~~G~~~~~p~~-----------~~l~~~ 559 (1466)
.++..++++++.+|+++|++|+|||+|++|++|.. .++.|+||||||+|+. +|+|...|+. .+|+.+
T Consensus 76 i~~~~vvv~R~~~G~v~a~~n~CpHrga~L~~g~~g~~~~i~CpyHgw~fd~-~G~~~~~P~~~~~~~~~~~~~~~L~~~ 154 (460)
T 1uli_A 76 MGEDPVMVVRQKNGEIRVFLNQCRHRGMRICRADGGNAKSFTCSYHGWAYDT-GGNLVSVPFEEQAFPGLRKEDWGPLQA 154 (460)
T ss_dssp ETTEEEEEEECTTSCEEEEESCCTTTCCCSCCSSEEECSCEECTTTCCEECT-TCCEEECTTHHHHCTTCCGGGSSCCEE
T ss_pred ECCeEEEEEEcCCCCEEEEeeeCCCCCCCCccccCCCCCEEEcCCCCCEEeC-CCCEeeCCccccccCCCCHhHcCCcee
Confidence 34344555555789999999999999999998876 4568999999999999 7999998863 247889
Q ss_pred EEEEEcCeEEEE
Q psy2951 560 KVTIQNDDSVVV 571 (1466)
Q Consensus 560 ~v~i~~~~~~~~ 571 (1466)
++++.+|.+|+.
T Consensus 155 ~v~~~~G~V~v~ 166 (460)
T 1uli_A 155 RVETYKGLIFAN 166 (460)
T ss_dssp EEEEETTEEEEE
T ss_pred eEEEECCEEEEE
Confidence 999888777764
|
| >2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur SUBU; rieske [2Fe-2S] ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A | Back alignment and structure |
|---|
Probab=98.89 E-value=6.9e-10 Score=107.71 Aligned_cols=67 Identities=21% Similarity=0.358 Sum_probs=59.7
Q ss_pred hhhhhhhcCCCCCCCccccc-eeecCCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEE
Q psy2951 975 ERNIYAVGTKCSHYGAPLVK-GSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVV 1042 (1466)
Q Consensus 975 ~g~~~a~~~~C~h~g~~l~~-g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~ 1042 (1466)
+|+++|+.+.|||.|++|.. +...++.+.||||||+||+ +|++...|+..+|+.|++++.+++.+++
T Consensus 73 ~g~~~a~~~~C~H~G~~l~~~~~~~~~~~~CP~Hgs~Fd~-~G~~~~gPa~~~L~~~pv~v~~d~~i~v 140 (141)
T 2nwf_A 73 AGEWLVMWGVCTHLGCVPIGGVSGDFGGWFCPCHGSHWDS-AGRIRKGPAPENLPIPLAKFIDETTIQL 140 (141)
T ss_dssp TSCEEEEECCCTTTCCCCEEEEETTTTEEEETTTTEEECT-TSCEEESSCCSCCCBCSEEESSSSEEEE
T ss_pred CCcEEEEeCcCCCCCeEccccCccCCCEEEcCCCCCEECC-CCCCccCCCCCCCCceeEEEEECCEEEE
Confidence 77899999999999999998 6666689999999999998 8999999999999999999855676665
|
| >3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* 2yfl_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=4.1e-09 Score=124.38 Aligned_cols=79 Identities=16% Similarity=0.304 Sum_probs=64.1
Q ss_pred CCCCEEEEEeeCCeEEEEeCCCCCCCcccCCce-ecCCEEEccCCCceEECCCCeeecCCCCC-----------------
Q psy2951 493 SSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGS-LGDGRVRCPWHGACFNIATGDIEDFPGMD----------------- 554 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~-~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~----------------- 554 (1466)
++..++++++.+|+++|++|+|||+|++|+.|. ..++.++||||||+|+. +|+|...|+..
T Consensus 79 ~~~~vvv~R~~dG~v~A~~n~C~Hrga~L~~g~~g~~~~i~CpyHgw~fd~-~G~~~~~P~~~~~~~~~~~~~~~~~~~~ 157 (457)
T 3gzx_A 79 GEDPVIMVRQKDQSIKVFLNQCRHRGMRIVRSDGGNAKAFTCTYHGWAYDI-AGNLVNVPFEKEAFCDKKEGDCGFDKAD 157 (457)
T ss_dssp TTEEEEEEECTTSCEEEEESCCTTTCCCSCCSSEEECSEEECTTTCCEEET-TSCEEECTTHHHHTCSSSTTTTSCCGGG
T ss_pred CCEEEEEEECCCCeEEEEeCcCCCCCcCccCCCCCcCCEEEcCCCCCEecC-CCcceecCccccccccccccccccChhh
Confidence 445556666679999999999999999999885 56779999999999999 69999888631
Q ss_pred -CCCeEEEEEEcCeEEEEE
Q psy2951 555 -SLPCYKVTIQNDDSVVVQ 572 (1466)
Q Consensus 555 -~l~~~~v~i~~~~~~~~~ 572 (1466)
+|+.+++.+..+-+|++.
T Consensus 158 ~~L~~~~v~e~~G~Vfv~~ 176 (457)
T 3gzx_A 158 WGPLQARVETYKGLVFANW 176 (457)
T ss_dssp CCCCEEEEEEETTEEEEES
T ss_pred CCCceEeEEEECCEEEEec
Confidence 357889988777777654
|
| >1nyk_A Rieske iron-sulfur protein; beta barrel, iron sulfur cluster, electron transport; 1.31A {Thermus thermophilus} SCOP: b.33.1.1 PDB: 3fou_A | Back alignment and structure |
|---|
Probab=98.82 E-value=1.8e-09 Score=108.00 Aligned_cols=68 Identities=21% Similarity=0.445 Sum_probs=61.6
Q ss_pred hhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCc-cccCCCCCCCCeEEEEEEcCCEEEEEcc
Q psy2951 977 NIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGD-IEDFPGMDSLPCYKVTIQNDDSVVVQAR 1045 (1466)
Q Consensus 977 ~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~-~~~~p~~~~l~~~~v~~~~~~~~~~~~~ 1045 (1466)
.++|+.+.|||.|++|..+...++.+.||||||+||+.||. +...|+..+|+.|++++ .++.+++...
T Consensus 79 gv~A~~~~CpH~G~~L~~g~~~~~~i~CP~Hgs~Fd~~tG~~~~~gPa~~~L~~~~v~v-~~g~V~v~~~ 147 (165)
T 1nyk_A 79 GVVAYSAVCTHLGCIVSQWVADEEAALCPCHGGVYDLRHGAQVIAGPPPRPVPQLPVRV-EDGVLVAAGE 147 (165)
T ss_dssp TEEEEECBCTTTCCBCCEEEGGGTEEECTTTCCEEEGGGTTEEEESSCSSCCCEECEEE-ETTEEEECSS
T ss_pred CEEEEEeecCCCCeEcccccCCCCEEECCCCCCEEcCCCCCeeecCCCCCCCcEEEEEE-ECCEEEEEec
Confidence 39999999999999999888888999999999999999997 88889989999999999 5788888643
|
| >2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A | Back alignment and structure |
|---|
Probab=98.82 E-value=4.2e-09 Score=126.87 Aligned_cols=60 Identities=23% Similarity=0.518 Sum_probs=51.4
Q ss_pred CCCCEEEEEeeCCeEEEEeCCCCCCCcccCCceecC-CEEEccCCCceEECCCCeeecCCCC
Q psy2951 493 SSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGD-GRVRCPWHGACFNIATGDIEDFPGM 553 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~~-~~~~Cp~H~~~f~~~~G~~~~~p~~ 553 (1466)
++..++++++.+|+++|++|+|||+|++|++|...+ +.|+||||||+|+. +|+|...|+.
T Consensus 67 ~g~~vvv~R~~~G~v~a~~n~C~Hrga~L~~g~~~~~~~i~CpyHgw~f~~-~G~~~~~P~~ 127 (470)
T 2b1x_A 67 SEDQFIVCRDEGGEIRGHLNACRHRGMQVCRAEMGNTSHFRCPYHGWTYSN-TGSLVGVPAG 127 (470)
T ss_dssp TTEEEEEEECTTSCEEEEESSCTTTCCCSCCSSEEECSEEECTTTCCEEET-TSCEEECTTT
T ss_pred CCeEEEEEEcCCCCEEEEecccCCCCCEeeccCcCCCCEEEECCCCCeecC-CCceeecCcc
Confidence 445555555579999999999999999999987764 69999999999999 7999999875
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 | Back alignment and structure |
|---|
Probab=98.81 E-value=1e-08 Score=115.91 Aligned_cols=168 Identities=17% Similarity=0.160 Sum_probs=112.0
Q ss_pred CcEEEECCCHhHHHHHHHHhhC-CCEEEEEeecCccccc-------------------------------------ccCH
Q psy2951 183 SNVVVIGSSFIGMEAAAFCASK-VKSVTVVGRGAVPFQE-------------------------------------SLGK 224 (1466)
Q Consensus 183 ~~vvVvGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~~~~-------------------------------------~~~~ 224 (1466)
.+|+|||||++|+.+|..|++. |.+|+++++.+.+... ....
T Consensus 40 ~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 119 (284)
T 1rp0_A 40 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAA 119 (284)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCHH
T ss_pred cCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEEEecCHH
Confidence 3799999999999999999997 9999999987543100 0124
Q ss_pred HHHHHHHHHHHh-CCcEEEcCceEEEEEecCCCCeEEEEcC---------CC-----cEEeccEEEEeeccccCccc---
Q psy2951 225 EVGERITKLFES-KGVKFVMKANVSSFEKNEKNDVTAANLD---------NG-----TTIPADLVIVGIGTVLNTNY--- 286 (1466)
Q Consensus 225 ~~~~~l~~~l~~-~GV~i~~~~~v~~i~~~~~~~~~~v~~~---------~g-----~~i~~D~Vi~a~G~~p~~~~--- 286 (1466)
++...+.+.+.+ .|+++++++.|+++..++ +++..+.+. ++ .++.+|.||+|+|..++..-
T Consensus 120 ~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~-~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~~~~~~ 198 (284)
T 1rp0_A 120 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-NRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATGV 198 (284)
T ss_dssp HHHHHHHHHHHTSTTEEEEETEEEEEEEEET-TEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTTTTHHH
T ss_pred HHHHHHHHHHHhcCCCEEEcCcEEEEEEecC-CeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHHHHHHH
Confidence 455566666655 699999999999997643 345444431 22 57999999999998775431
Q ss_pred --cccCC--ceecCCccEEECC-------CCCcCCCCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCC
Q psy2951 287 --LDGKG--VELNGQKAVVVNE-------YLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK 355 (1466)
Q Consensus 287 --l~~~g--l~~~~~g~i~vd~-------~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~ 355 (1466)
+...+ +.+.+...+.++. ..+++.|++|++||++.. +.|.......+..+..+|..+|.++....
T Consensus 199 ~~~~~~g~~~~v~~~~g~~~~~~~~~~v~~~~~~~p~i~a~G~~~~~----~~g~~~~gp~~~~~~~sG~~~a~~i~~~l 274 (284)
T 1rp0_A 199 KRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAE----IDGAPRMGPTFGAMMISGQKAGQLALKAL 274 (284)
T ss_dssp HHHHHTTSSSCCCCCEEECHHHHHHHHHHHCEEEETTEEECTHHHHH----HHTCEECCSCCHHHHHHHHHHHHHHHHHT
T ss_pred HHhhhccCCCCcCCcCCchhhhhhHHHhhccccccCCEEEEeeehhh----hcCCCCcChHHHHHHHhHHHHHHHHHHHh
Confidence 11111 1111222232332 235677999999998642 11222223356678899999999998644
|
| >1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ... | Back alignment and structure |
|---|
Probab=98.79 E-value=2e-09 Score=110.59 Aligned_cols=69 Identities=23% Similarity=0.378 Sum_probs=62.1
Q ss_pred hhhhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEE
Q psy2951 973 FAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVV 1042 (1466)
Q Consensus 973 ~~~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~ 1042 (1466)
..+++++++.+.|||.|++|..+..+.+.+.||||||+||+ +|++...|+..+|+.|++++.+++.+++
T Consensus 127 ~~~ge~~a~~~~CtH~G~~l~~~~~~~~~~~CP~HGs~FD~-~G~v~~gPa~~~L~~~p~~v~~d~~I~v 195 (196)
T 1pp9_E 127 VKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDA-SGRIRKGPAPLNLEVPSYEFTSDDMVIV 195 (196)
T ss_dssp CSSTTEEEEECCCTTTSCCCEETCSTTSSEEETTTTEEECT-TCCEEESSCCSCCCCCCEEEETTTEEEE
T ss_pred ccCCeEEEEECccCCCCeeccccCCCCCEEEeCCCCCEECC-CCCCccCCCCCCCcceeEEEEECCEEEE
Confidence 34789999999999999999988777789999999999998 9999999999999999999866777765
|
| >1jm1_A Rieske iron-sulfur protein SOXF; electron transport, respiratory chain, oxidoreductase; 1.11A {Sulfolobus acidocaldarius} SCOP: b.33.1.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=3.6e-09 Score=109.55 Aligned_cols=70 Identities=20% Similarity=0.449 Sum_probs=61.1
Q ss_pred hhhhhhhcCCCCCCCccccceee-----------cCCEEEcCCCCceeecCCC-ccccCCCCCCCCeEEEEEEc-CCEEE
Q psy2951 975 ERNIYAVGTKCSHYGAPLVKGSL-----------GDGRVRCPWHGACFNIATG-DIEDFPGMDSLPCYKVTIQN-DDSVV 1041 (1466)
Q Consensus 975 ~g~~~a~~~~C~h~g~~l~~g~~-----------~~~~~~cp~h~~~f~~~~g-~~~~~p~~~~l~~~~v~~~~-~~~~~ 1041 (1466)
+|+++|+.+.|||.|++|..|.+ .++.+.||||||+||+.|| ++...|+..+|+.|++++++ ++.++
T Consensus 84 ~g~i~A~~n~CpH~G~~L~~g~~~p~~~~~~~~~~~~~i~CP~Hgs~FDl~tGG~v~~gPa~~~L~~~~v~v~~~~g~v~ 163 (204)
T 1jm1_A 84 NGTIFAFSDVCVHLGCQLPAQVIVSSESDPGLYAKGADLHCPCHGSIYALKDGGVVVSGPAPRPLPIVILDYDSSTGDIY 163 (204)
T ss_dssp TTCEEEEESBCTTTCCBCCTTEEESSTTSSEEETTTTEEECTTTCCEEEGGGTSEEEESSCCSCCCBEEEEECTTTCEEE
T ss_pred CCEEEEEeCcCCCCCcCccccccccccccccccCCCCEEECCCCCCEEeCCCCCeEecCCCCCCCCeEeeEEEecCCEEE
Confidence 57899999999999999998865 5789999999999999986 99988999999999999842 67777
Q ss_pred EEc
Q psy2951 1042 VQA 1044 (1466)
Q Consensus 1042 ~~~ 1044 (1466)
+..
T Consensus 164 v~g 166 (204)
T 1jm1_A 164 AVG 166 (204)
T ss_dssp EEE
T ss_pred EEe
Confidence 643
|
| >3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase, oxidoreductase; 1.75A {Stenotrophomonas maltophilia} PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=3.9e-09 Score=121.68 Aligned_cols=83 Identities=22% Similarity=0.327 Sum_probs=68.9
Q ss_pred ecCchhhhhhhhhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCC-------CCCCCeEEEEEEc
Q psy2951 964 VGMDPLAAQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPG-------MDSLPCYKVTIQN 1036 (1466)
Q Consensus 964 ~g~~~~~~~~~~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~-------~~~l~~~~v~~~~ 1036 (1466)
.+...++.+..+|+++|+.+.|||.|++|..|.+.++.+.||||||+|++ +|+|...|. ...|+.|++++ .
T Consensus 28 ~g~~vvv~R~~~G~v~a~~n~CpHrg~~L~~G~~~~~~i~CpyHgw~fd~-~G~~~~~P~~~~~~~~~~~l~~~~v~~-~ 105 (349)
T 3gke_A 28 LDTPLALYRQPDGVVAALLDICPHRFAPLSDGILVNGHLQCPYHGLEFDG-GGQCVHNPHGNGARPASLNVRSFPVVE-R 105 (349)
T ss_dssp TTEEEEEEECTTSCEEEEESSCTTTCCCGGGCEEETTEEECTTTCCEECT-TCCEEECCSTTCCCCGGGCCCBCCEEE-E
T ss_pred CCEEEEEEEcCCCcEEEEeCcCCCCCcCCccCCccceEEEECCCCCEEcC-CCCccccCccccccccccccceeeEEE-E
Confidence 33333445556899999999999999999999999999999999999998 999998883 34689999998 6
Q ss_pred CCEEEEEcchhh
Q psy2951 1037 DDSVVVQARKDE 1048 (1466)
Q Consensus 1037 ~~~~~~~~~~~~ 1048 (1466)
+|.+++.....+
T Consensus 106 ~G~V~v~~~~~~ 117 (349)
T 3gke_A 106 DALIWIWPGDPA 117 (349)
T ss_dssp TTEEEECCSCGG
T ss_pred CCEEEEeeCCCC
Confidence 689999765443
|
| >2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C* | Back alignment and structure |
|---|
Probab=98.73 E-value=4.9e-09 Score=107.55 Aligned_cols=67 Identities=22% Similarity=0.425 Sum_probs=58.5
Q ss_pred hhhhhhhcCCCCCCCccccce-eecCCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEE
Q psy2951 975 ERNIYAVGTKCSHYGAPLVKG-SLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVV 1042 (1466)
Q Consensus 975 ~g~~~a~~~~C~h~g~~l~~g-~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~ 1042 (1466)
+|+++|+.+.|||.|++|..+ .-..+.+.||||||+||+ +|++...|+..+|+.|+++++.++.+++
T Consensus 119 ~g~~~a~~~~C~H~G~~l~~~~~g~~~~~~CP~Hg~~Fd~-~G~~~~gPa~~~L~~~~~~v~~d~~i~i 186 (187)
T 2qjy_C 119 AGEWLVMWGVCTHLGCSPIGGVSGDFGGWFCPCHGSHYDS-AGRIRKGPAPENLPIPLAKFIDETTIQL 186 (187)
T ss_dssp TCCEEEEECCCTTTSCCCEEEEETTTTEEEETTTTEEECT-TSCEEESSCCSCCCBCSEEEEETTEEEE
T ss_pred CCeEEEEeCccCCCCeECccCcCCCcCEEEeCCCCCEECC-CCeEeCCCCCCCCceEEEEEEeCCEEEE
Confidence 688999999999999999874 222389999999999998 7999999999999999999966777765
|
| >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=2e-09 Score=130.56 Aligned_cols=94 Identities=13% Similarity=0.139 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccc--------cccCccccccCCce-e
Q psy2951 776 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG--------TVLNTNYLDGKGVE-L 846 (1466)
Q Consensus 776 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G--------~~p~~~~~~~~gl~-~ 846 (1466)
..+...+...+++.| +++++++|++|+.. ++.+ .|.+.+|+++.+|.||+|+| +.|+.+..+...+. +
T Consensus 204 ~g~~~l~~~~~~~~g-~i~~~~~V~~i~~~-~~~v-~v~~~~g~~~~ad~vi~a~~~~~l~~i~~~p~l~~~~~~~~~~~ 280 (431)
T 3k7m_X 204 NGSADLVDAMSQEIP-EIRLQTVVTGIDQS-GDVV-NVTVKDGHAFQAHSVIVATPMNTWRRIVFTPALPERRRSVIEEG 280 (431)
T ss_dssp TCTHHHHHHHHTTCS-CEESSCCEEEEECS-SSSE-EEEETTSCCEEEEEEEECSCGGGGGGSEEESCCCHHHHHHHHHC
T ss_pred CcHHHHHHHHHhhCC-ceEeCCEEEEEEEc-CCeE-EEEECCCCEEEeCEEEEecCcchHhheeeCCCCCHHHHHHHHhC
Confidence 344555666667778 99999999999844 3334 57888888899999999999 88876532211111 1
Q ss_pred eCCCcEEeCCCCCCCCCCeEEecccc
Q psy2951 847 NGQKAVVVNEYLETNVPGVYAGGDIA 872 (1466)
Q Consensus 847 ~~~G~i~vd~~~~t~~~~iya~GD~~ 872 (1466)
.....++++..++|+.+++|+.||+.
T Consensus 281 ~~~~~~kv~~~~~~~~~~i~~~~d~~ 306 (431)
T 3k7m_X 281 HGGQGLKILIHVRGAEAGIECVGDGI 306 (431)
T ss_dssp CCCCEEEEEEEEESCCTTEEEEBSSS
T ss_pred CCcceEEEEEEECCCCcCceEcCCCC
Confidence 12234889999999999999999863
|
| >3gcf_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske oxygenase, 2Fe-2S, electron transfer, oxidoreductase; 2.30A {Nocardioides aromaticivorans} | Back alignment and structure |
|---|
Probab=98.69 E-value=7e-09 Score=117.52 Aligned_cols=81 Identities=25% Similarity=0.472 Sum_probs=66.0
Q ss_pred EeecCchhhhhhhhhhhhhhcCCCCCCCcccccee--ecCCEEEcCCCCceeecCCCccccCCC--------CCCCCeEE
Q psy2951 962 LTVGMDPLAAQFAERNIYAVGTKCSHYGAPLVKGS--LGDGRVRCPWHGACFNIATGDIEDFPG--------MDSLPCYK 1031 (1466)
Q Consensus 962 ~~~g~~~~~~~~~~g~~~a~~~~C~h~g~~l~~g~--~~~~~~~cp~h~~~f~~~~g~~~~~p~--------~~~l~~~~ 1031 (1466)
.+.+...++.+ .+|+++|+.+.|||.|++|..|. ..++.+.||||||+|++.+|+|...|+ ..+|+.|+
T Consensus 53 ~i~G~~VvV~R-~dG~v~A~~N~CpHRGa~Ls~G~~~~~~~~I~CPyHGW~Fdl~dG~cv~iP~~p~~~~~~~~~L~~yp 131 (394)
T 3gcf_A 53 TMLGEKVLLTR-AKGEVKAIADGCAHRGVPFSKEPLCFKAGTVSCWYHGWTYDLDDGRLVDVLTSPGSPVIGKIGIKVYP 131 (394)
T ss_dssp EETTEEEEEEE-ETTEEEEEESSCTTTCCCGGGSCBCSSTTEEECTTTCEEEETTTCBEEEETTSTTCTTTTSCBCCEEC
T ss_pred EECCEEEEEEE-eCCeEEEeeCcCCCCCCCCcCCcccCcCCEEECCCCCcEEECCCCceeccCCCcccccccccCceEEE
Confidence 33343434445 58999999999999999999987 357899999999999998999987553 34699999
Q ss_pred EEEEcCCEEEEEc
Q psy2951 1032 VTIQNDDSVVVQA 1044 (1466)
Q Consensus 1032 v~~~~~~~~~~~~ 1044 (1466)
+++ .+|.+++..
T Consensus 132 V~e-~~G~VfV~l 143 (394)
T 3gcf_A 132 VQV-AQGVVFVFI 143 (394)
T ss_dssp EEE-ETTEEEEEE
T ss_pred EEE-ECCcEEEec
Confidence 998 788888875
|
| >2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1e-07 Score=116.07 Aligned_cols=149 Identities=9% Similarity=0.117 Sum_probs=88.5
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCc----------cchhc---c-----------c----
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK----------LSKQL---D-----------I---- 93 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~~~~----------~~~~~---~-----------~---- 93 (1466)
..+||+|||||+||++||..|++.|.++.|++...... ....+. +...+ . .
T Consensus 26 ~~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~i-G~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f~~ 104 (637)
T 2zxi_A 26 DEFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTI-GQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKM 104 (637)
T ss_dssp GCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGT-TCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEEEE
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEEeccccc-CCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccceee
Confidence 35899999999999999999999999988876542111 000000 00000 0 0
Q ss_pred ----------------CcccccccChhhhhc-CCeEEEeCceEEEeccccc-cEEEecCCcEEecCEEEEccCCCCCCCC
Q psy2951 94 ----------------KADSILLRTEEFYKD-NDIHVIKGKKIISDSELNE-KKIKLQDGTSIDFTKIYLATGSSPRTIS 155 (1466)
Q Consensus 94 ----------------~~~~~~~~~~~~~~~-~~v~~~~~~~v~~~~~~~~-~~v~~~~~~~~~~d~lviAtG~~~~~~~ 155 (1466)
+...+...+.+.+++ .+++++.+.......+.+. ..|.+.+|..+.+|.||+|||+.+..+.
T Consensus 105 l~~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~~~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVLATG~~s~~~~ 184 (637)
T 2zxi_A 105 LNTRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIKQEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFLNGVI 184 (637)
T ss_dssp ESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEESCEEEEEESSSBEEEEEETTSCEEECSEEEECCTTCBTCEE
T ss_pred cccccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEEEeEEEEEEecCCEEEEEEECCCcEEEeCEEEEccCCCccCce
Confidence 000112223344555 5899966543322222222 2467778889999999999999776432
Q ss_pred CCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEee
Q psy2951 156 QADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGR 213 (1466)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~ 213 (1466)
+++... + ..+ + + |+.+++++|..|.++|.+++.+..
T Consensus 185 -~~G~~~-~---------------~~G-r---~-G~~~A~~la~~L~~lG~~v~~l~t 220 (637)
T 2zxi_A 185 -YIGDKM-I---------------PGG-R---L-GEPRSEGLSDFYRRFDFPLIRFKT 220 (637)
T ss_dssp -EETTEE-E---------------ECS-B---T-TBCCBCTHHHHHHHTTCCCEEEEE
T ss_pred -ecccee-c---------------CCC-C---C-CchhHHHHHHHHHhcCCceEEecC
Confidence 222211 0 012 2 2 356789999999999988766643
|
| >2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.1e-08 Score=119.37 Aligned_cols=85 Identities=15% Similarity=0.291 Sum_probs=69.8
Q ss_pred EEEEeecCchhhhhhhhhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCCC------CCCCeEEE
Q psy2951 959 LAILTVGMDPLAAQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGM------DSLPCYKV 1032 (1466)
Q Consensus 959 ~g~~~~g~~~~~~~~~~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~------~~l~~~~v 1032 (1466)
..+.+.|...++.+..+|+++|+.+.|||.|++|..|.+.++.+.||||||+|++ +|+|...|.. ..|+.|++
T Consensus 41 ~~~~~~g~~vvl~R~~~G~v~a~~n~CpHrga~L~~g~~~~~~i~CpyHgw~f~~-~G~~~~~P~~~~~~~~~~l~~~~v 119 (386)
T 2zyl_A 41 HGVEAFGTKLVVFADSHGDLKVLDGYCRHMGGDLSEGTVKGDEVACPFHDWRWGG-DGRCKLVPYARRTPRMARTRSWTT 119 (386)
T ss_dssp EEEEETTEEEEEEECTTSCEEEEESBCTTTCCBGGGSEEETTEEECTTTCCEEET-TSBEEECTTCSSCCTTCBCCEECE
T ss_pred EEEEECCeEEEEEECCCCCEEEEcCcCCCCCCCCCCCcccCCEEEeCCCCCEECC-CCCccccCcccccCcccCcceEeE
Confidence 3334444444455556899999999999999999999999999999999999997 9999988863 46899999
Q ss_pred EEEcCCEEEEEcc
Q psy2951 1033 TIQNDDSVVVQAR 1045 (1466)
Q Consensus 1033 ~~~~~~~~~~~~~ 1045 (1466)
++ .+|.+++...
T Consensus 120 ~~-~~G~v~v~~~ 131 (386)
T 2zyl_A 120 DV-RSGLLFVWHD 131 (386)
T ss_dssp EE-ETTEEEEEEC
T ss_pred EE-ECCEEEEEEC
Confidence 98 7888888654
|
| >3gkq_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske nonheme iron oxygenase, electron transfer, putidaredoxin-type ferredoxin; 2.10A {Sphingomonas} | Back alignment and structure |
|---|
Probab=98.66 E-value=7.4e-09 Score=116.85 Aligned_cols=73 Identities=19% Similarity=0.371 Sum_probs=62.7
Q ss_pred hhhhhhhhhhhhcCCCCCCCcccccee--ecCCEEEcCCCCceeecCCCccccCCC--------CCCCCeEEEEEEcCCE
Q psy2951 970 AAQFAERNIYAVGTKCSHYGAPLVKGS--LGDGRVRCPWHGACFNIATGDIEDFPG--------MDSLPCYKVTIQNDDS 1039 (1466)
Q Consensus 970 ~~~~~~g~~~a~~~~C~h~g~~l~~g~--~~~~~~~cp~h~~~f~~~~g~~~~~p~--------~~~l~~~~v~~~~~~~ 1039 (1466)
+.+ .+|+++|+.+.|||.|++|..|. ..++.+.||||||+|++.+|+|...|+ ..+|+.|++++ .+|.
T Consensus 58 V~R-~dG~v~A~~N~CpHRGa~Ls~G~~~~~~~~I~CPyHGW~Fdl~dG~cv~iP~~P~~~~~~~~~L~~ypV~e-~~G~ 135 (389)
T 3gkq_A 58 LNR-VDGVVHAIADRCLHRGVTLSDKVECYSKATISCWYHGWTYRWDNGKLVDILTNPTSVQIGRHALKTYPVRE-EKGL 135 (389)
T ss_dssp EEE-ETTEEEEEESSCTTTCCCGGGGCCCSBTTEEECTTTCEEEETTTCBEEEETTCTTCTTTTSCBCCBCCEEE-ETTE
T ss_pred EEE-eCCeEEEeCCcCCCCCCCccCCcccCcCCEEECCCCCCEEECCCCCeecccCCcccccccccCCcEEEEEE-ECCe
Confidence 344 58899999999999999999987 468999999999999998999987543 34699999998 7888
Q ss_pred EEEEc
Q psy2951 1040 VVVQA 1044 (1466)
Q Consensus 1040 ~~~~~ 1044 (1466)
+++..
T Consensus 136 VfV~l 140 (389)
T 3gkq_A 136 VFLFV 140 (389)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 88876
|
| >3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A | Back alignment and structure |
|---|
Probab=98.65 E-value=4.4e-08 Score=119.84 Aligned_cols=147 Identities=11% Similarity=0.083 Sum_probs=91.5
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC-CCCCCCCccch----------hc---c---------------
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN-FLPYDRVKLSK----------QL---D--------------- 644 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~-~~~~~~~~~~~----------~~---~--------------- 644 (1466)
..+||+|||||+||++||..|++.|.+ |+++|+.. .++...+.... .+ .
T Consensus 27 ~~yDVIVIGgG~AGl~AAlaLAr~G~k--VlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f~ 104 (651)
T 3ces_A 27 DPFDVIIIGGGHAGTEAAMAAARMGQQ--TLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFR 104 (651)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHTTCC--EEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEEE
T ss_pred CcCCEEEECChHHHHHHHHHHHhCCCC--EEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccchh
Confidence 358999999999999999999999988 77787763 11111110000 00 0
Q ss_pred ----------------cCcccccccCHhHhhh-CCcEEEEceEEEEeccccc--cEEEccCCCEEecCEEEEcCCCCCCc
Q psy2951 645 ----------------IKADSILLRTEEFYKD-NDIHVIKGKKIISDSELNE--KKIKLQDGTSIDFTKIYLATGSSPRT 705 (1466)
Q Consensus 645 ----------------~~~~~~~~~~~~~~~~-~gv~~~~~~~v~~i~~~~~--~~v~~~~~~~~~~d~lviAtG~~~~~ 705 (1466)
.+...+...+.+.+++ .|++++. ++|..+...+. ..|.+.+|.++.+|+||+|||+.+..
T Consensus 105 ~l~~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~~-~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt~s~~ 183 (651)
T 3ces_A 105 ILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQ-QAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDG 183 (651)
T ss_dssp EESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEE-CCEEEEEESSSBEEEEEETTSEEEEEEEEEECCSTTTCC
T ss_pred hhhcccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEEE-EEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCCCccC
Confidence 0000112223344555 5999965 45888722222 24666778889999999999998887
Q ss_pred CCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEee
Q psy2951 706 ISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGR 765 (1466)
Q Consensus 706 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~ 765 (1466)
+.++ |.... .+++ +| |.+++++|..|++.|.+|+.+..
T Consensus 184 ~~i~-G~~~~-----------------~~gr---iG-g~~a~eLA~~L~~lG~~v~~~~t 221 (651)
T 3ces_A 184 KIHI-GLDNY-----------------SGGR---AG-DPPSIPLSRRLRELPLRVGRLKT 221 (651)
T ss_dssp EEEC-C----------------------------------CCHHHHHHHTTTCCEEEECC
T ss_pred cccc-CcccC-----------------CCCC---cc-chhhhHHHHHHHhcCCeEEEecC
Confidence 7777 65410 0223 56 78999999999999999998853
|
| >1vf5_D Rieske iron-sulfur protein; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.33.1.1 f.23.12.1 PDB: 2d2c_D* 2e74_D* 2e75_D* 2e76_D* 2zt9_D* | Back alignment and structure |
|---|
Probab=98.65 E-value=3.2e-09 Score=108.81 Aligned_cols=70 Identities=26% Similarity=0.538 Sum_probs=60.4
Q ss_pred hhhhhhh--hhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEEEc
Q psy2951 972 QFAERNI--YAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQA 1044 (1466)
Q Consensus 972 ~~~~g~~--~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~~~ 1044 (1466)
+..+|++ +|+.+.|||.|++|..+. .++.+.|||||++||. +|++...|+..+|+.|++++ +++.+++..
T Consensus 93 ~~~~g~~~~~a~~~~CtH~G~~l~~~~-~~~~~~CP~Hgs~Fd~-~G~~~~gPa~~~L~~~~v~v-~~g~v~v~~ 164 (179)
T 1vf5_D 93 VESKEAIRDYGINAVCTHLGCVVPWNA-AENKFKCPCHGSQYDE-TGRVIRGPAPLSLALCHATV-QDDNIVLTP 164 (179)
T ss_dssp BCTTCCBCSCCCBCBCTTTSCBCCBCS-SSSSEECTTTCCEECS-SSCCCSSSCCSCCBCCCCCC-SSSSCCCCC
T ss_pred EECCCcEEEEEEeCccCCCCCCCcccC-CCCEEECCCCCCEECC-CCcEecCCCCCCCCeEEEEE-ECCEEEEEe
Confidence 3446665 999999999999998876 5688999999999996 99999999999999999998 677777753
|
| >3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.7e-08 Score=103.13 Aligned_cols=66 Identities=24% Similarity=0.389 Sum_probs=55.8
Q ss_pred hhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEE
Q psy2951 975 ERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVV 1042 (1466)
Q Consensus 975 ~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~ 1042 (1466)
+++++++.+.|||.|+.+..+.-.++.+.||||||+||+ +|++...|+..+|+.+++++ +++.+++
T Consensus 119 ~g~~~a~~~iCtHlGc~p~~~~~~~~~~~CPcHGs~FD~-~G~v~~gPa~~~L~v~p~~v-~~~~I~v 184 (185)
T 3cx5_E 119 DPQWLIMLGICTHLGCVPIGEAGDFGGWFCPCHGSHYDI-SGRIRKGPAPLNLEIPAYEF-DGDKVIV 184 (185)
T ss_dssp STTEEEEECCCTTTSCCCEEEETTTTEEEETTTTEEECT-TCCEEESSCCSCCCCCCEEE-ETTEEEE
T ss_pred CCeEEEEecccCCCCceeccCCCCCCEEEcCCCCCEECC-CCCEecCCCCCCcceEEEEE-ECCEEEE
Confidence 689999999999999954433335689999999999998 99999999988998888888 6777765
|
| >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.5e-09 Score=131.82 Aligned_cols=95 Identities=12% Similarity=0.143 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeec--------cccCccccccCCcee-
Q psy2951 1247 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG--------TVLNTNYLDGKGVEL- 1317 (1466)
Q Consensus 1247 ~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G--------~~p~~~~~~~~gl~~- 1317 (1466)
..+...+.+++++.| +++++++|++|+ .+++. ..|.+.+|+++.||.||+|+| ..|+.+.+....+..
T Consensus 204 ~g~~~l~~~~~~~~g-~i~~~~~V~~i~-~~~~~-v~v~~~~g~~~~ad~vi~a~~~~~l~~i~~~p~l~~~~~~~~~~~ 280 (431)
T 3k7m_X 204 NGSADLVDAMSQEIP-EIRLQTVVTGID-QSGDV-VNVTVKDGHAFQAHSVIVATPMNTWRRIVFTPALPERRRSVIEEG 280 (431)
T ss_dssp TCTHHHHHHHHTTCS-CEESSCCEEEEE-CSSSS-EEEEETTSCCEEEEEEEECSCGGGGGGSEEESCCCHHHHHHHHHC
T ss_pred CcHHHHHHHHHhhCC-ceEeCCEEEEEE-EcCCe-EEEEECCCCEEEeCEEEEecCcchHhheeeCCCCCHHHHHHHHhC
Confidence 335566666777778 999999999998 34434 458888998899999999999 778766322111111
Q ss_pred eCCCeEEeCCCccccCCCEEEeccccc
Q psy2951 1318 NGQKAVVVNEYLETNVPGVYAGGDIAY 1344 (1466)
Q Consensus 1318 ~~~G~i~vd~~~~t~~~~v~a~GD~a~ 1344 (1466)
.....+.|+..++++.++||+.||+..
T Consensus 281 ~~~~~~kv~~~~~~~~~~i~~~~d~~~ 307 (431)
T 3k7m_X 281 HGGQGLKILIHVRGAEAGIECVGDGIF 307 (431)
T ss_dssp CCCCEEEEEEEEESCCTTEEEEBSSSS
T ss_pred CCcceEEEEEEECCCCcCceEcCCCCE
Confidence 122358999999999999999999743
|
| >3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A | Back alignment and structure |
|---|
Probab=98.61 E-value=2.5e-08 Score=116.36 Aligned_cols=83 Identities=13% Similarity=0.209 Sum_probs=68.5
Q ss_pred EeecCchhhhhhhhhhhhhhcCCCCCCCcccc-ceeecCCEEEcCCCCceeecCCCccccCCCC--------CCCCeEEE
Q psy2951 962 LTVGMDPLAAQFAERNIYAVGTKCSHYGAPLV-KGSLGDGRVRCPWHGACFNIATGDIEDFPGM--------DSLPCYKV 1032 (1466)
Q Consensus 962 ~~~g~~~~~~~~~~g~~~a~~~~C~h~g~~l~-~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~--------~~l~~~~v 1032 (1466)
.+.+...++.+..+|+++|+.+.|||.|++|. .|...++.+.||||||+|++ +|+++..|+. .+|+.|++
T Consensus 63 ~i~g~~vvv~R~~dG~v~A~~n~CpHrga~L~~~g~~~~~~i~CPyHgw~fdl-dG~~~~~P~~~~~~~~~~~~L~~~~v 141 (412)
T 3vca_A 63 RVGAYEVVIVRSRDGEVRAFHNSCRHRGSLICKARQGQVAKLVCPYHQWTYEL-DGKLIWANDMGPDFDASKYGLKPVNL 141 (412)
T ss_dssp EETTEEEEEEECTTSCEEEEESSCTTTCCCSCCSSEEECSSEECTTTCCEECT-TSCEEECTTCCTTCCGGGCSCCEEEE
T ss_pred EECCEEEEEEEcCCCCEEEecccCCCCCCEeecccccCCCEEEcCCCCCEEcC-CCccccCCccccccCcccCCCcEEEE
Confidence 33344444455568999999999999999998 78888999999999999997 9999988864 35999999
Q ss_pred EEEcCCEEEEEcch
Q psy2951 1033 TIQNDDSVVVQARK 1046 (1466)
Q Consensus 1033 ~~~~~~~~~~~~~~ 1046 (1466)
++ .+|.+++....
T Consensus 142 ~~-~~G~V~v~~~~ 154 (412)
T 3vca_A 142 RN-LDGLIYICLSD 154 (412)
T ss_dssp EE-ETTEEEEECSS
T ss_pred EE-ECCEEEEEecC
Confidence 98 78899987643
|
| >3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP} | Back alignment and structure |
|---|
Probab=98.57 E-value=3.6e-08 Score=114.98 Aligned_cols=84 Identities=15% Similarity=0.222 Sum_probs=68.9
Q ss_pred EEeecCchhhhhhhhhhhhhhcCCCCCCCccccc-eeecCCEEEcCCCCceeecCCCccccCCCC--------CCCCeEE
Q psy2951 961 ILTVGMDPLAAQFAERNIYAVGTKCSHYGAPLVK-GSLGDGRVRCPWHGACFNIATGDIEDFPGM--------DSLPCYK 1031 (1466)
Q Consensus 961 ~~~~g~~~~~~~~~~g~~~a~~~~C~h~g~~l~~-g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~--------~~l~~~~ 1031 (1466)
+.+.+...++.+..+|+++|+.+.|||.|++|.. |...++.+.||||||+|++ +|++...|.. .+|+.|+
T Consensus 60 ~~i~g~~vvv~R~~dG~v~A~~n~C~Hrga~L~~~g~~~~~~i~CpyHgw~fd~-dG~~~~~P~~~~~~~~~~~~L~~~~ 138 (409)
T 3n0q_A 60 HQVGNYNVIIVRGADNVIRAFHNACRHRGSVICKAKKGNNPKLVCPYHQWTYEL-DGRLLWARDMGPDFEPSRHGLKTVH 138 (409)
T ss_dssp EEETTEEEEEEECTTSCEEEEESCCTTTCCCSCCSSEEECSSEECTTTCCEECT-TSCEEECTTCCTTCCGGGCSCCEEE
T ss_pred EEECCEEEEEEEcCCCCEEeecCcCCcCcCCccCcCccCCCEEEECCCCCEEeC-CCCcccCCcCCcccCcccCCCceEE
Confidence 3333444445555689999999999999999986 8888899999999999997 9999988864 3699999
Q ss_pred EEEEcCCEEEEEcch
Q psy2951 1032 VTIQNDDSVVVQARK 1046 (1466)
Q Consensus 1032 v~~~~~~~~~~~~~~ 1046 (1466)
+++ .+|.+++....
T Consensus 139 v~~-~~G~Vfv~~~~ 152 (409)
T 3n0q_A 139 CRE-LAGLIYICLAD 152 (409)
T ss_dssp EEE-ETTEEEEECSS
T ss_pred EEE-ECCEEEEEeCC
Confidence 998 78899997643
|
| >3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... | Back alignment and structure |
|---|
Probab=98.54 E-value=4.9e-10 Score=140.31 Aligned_cols=242 Identities=14% Similarity=0.155 Sum_probs=120.8
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCC-CCCCCCchhhc---cCcccccccChhhhccCCcEEEcCCe
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP-YDRVKLSKQLD---IKADSILLRTEEFYKDNDIHVIKGKK 1141 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~-~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~ 1141 (1466)
..+|||||||+||+++|..|++.|. +|+|||+++..+ +.++..++... ...+.+.......+...++.+..++.
T Consensus 46 ~~dvvIIG~G~aGl~aA~~l~~~G~--~V~liE~~~~~gg~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~l~~~~~ 123 (623)
T 3pl8_A 46 KYDVVIVGSGPIGCTYARELVGAGY--KVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNVIQGQLMSVSVPVNTLVV 123 (623)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSCCCSSSSTTCCTTCSHHHHHSGGGTHHHHHHTCEESCCCCCCCCC
T ss_pred cCCEEEECCcHHHHHHHHHHHhCCC--cEEEEeccCCCCCcccccccccccCCCccHHHHHHHHHHhhhhcccccccccc
Confidence 4689999999999999999999999 999999998776 44444444332 11222222222223333333333332
Q ss_pred EEEee-cCCCCeEEecCCcE---EecCeE-------------EEecCCCCCcCCCCCCCCcEEEecCHH--HHHhhhccc
Q psy2951 1142 IISDS-ELNEKKIKLQDGTS---IDFTKI-------------YLATGSSPRTISQADGVNKVFYLRTVE--DANNIAPHI 1202 (1466)
Q Consensus 1142 v~~i~-d~~~~~v~~~~g~~---~~yd~l-------------vlAtG~~~~~~~~~~g~~~v~~~~~~~--~~~~l~~~~ 1202 (1466)
++... +.....+.+.++.. ..|+.+ +..+|..++..+.. ....+++.. ++..+...+
T Consensus 124 ~~~~~~~~~~~~v~l~~g~~~~~~~~~~l~~~~~~~~vGG~~~~~~g~~~r~~~~e----~~~~l~~~~v~~~~~l~~~~ 199 (623)
T 3pl8_A 124 DTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGGMSTAWTCATPRFDREQ----RPLLVKDDADADDAEWDRLY 199 (623)
T ss_dssp CCSCTTSCCCSSCCSCTTCCTTCCTTSCCTTCEECCSTTGGGGTCCCBCCCCCGGG----SCCSSTTCHHHHHHHHHHHH
T ss_pred ccccccccccCcEEeccCCCcccccchhhhhhcccccccCcceeeccccccCChHH----hhhhhcccCccChhhHHHHH
Confidence 21110 11112233333211 224433 22234444444322 112222111 123333322
Q ss_pred CCCCeEEEEcCCHHHHH-----HHH----HHhc-CCC---eEEEEcCCCcCCcccccHHHHHHHHHH------HHhCCcE
Q psy2951 1203 TPESNVVVIGSSFIGME-----AAA----FCAS-KVK---SVTVVGRGAVPFQESLGKEVGERITKL------FESKGVK 1263 (1466)
Q Consensus 1203 ~~~~~vvVvG~g~~g~e-----~a~----~l~~-~g~---~v~vv~~~~~~~~~~~~~~~~~~l~~~------~~~~gv~ 1263 (1466)
....+++.+|++....+ ... .+.. ... ........+ ... .++. ....+... +++.||+
T Consensus 200 ~~~~~l~~vgg~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~a~~~~~~-~~~-r~s~-~~~~l~~~~~l~~~~~~~nv~ 276 (623)
T 3pl8_A 200 TKAESYFQTGTDQFKESIRHNLVLNKLTEEYKGQRDFQQIPLAATRRSP-TFV-EWSS-ANTVFDLQNRPNTDAPEERFN 276 (623)
T ss_dssp HHHHHHHTEESCTTTTCHHHHHHHHHHHHHTTTTSCCEECCEEEEEEET-TEE-EECC-HHHHCCCCCEEETTEEEEEEE
T ss_pred HHHHHhcccccccccCccccccchHHHHHhhhhcccccccchhhccCCC-Ccc-ccch-HHhhhhhhhcchhhccCCCEE
Confidence 22334445565542211 111 1111 111 011111010 000 1111 12222222 3445899
Q ss_pred EEcCceEEEEEecC-CCcEEEEEcC---CCC--eeecCEEEEeeccccCccccccCCce
Q psy2951 1264 FVMKANVSSFEKNE-KNDVTAANLD---NGT--TIPADLVIVGIGTVLNTNYLDGKGVE 1316 (1466)
Q Consensus 1264 ~~~~~~v~~i~~~~-~g~~~~v~l~---~g~--~i~~D~vv~a~G~~p~~~~~~~~gl~ 1316 (1466)
+++++.|+++...+ ++++.+|++. +|+ +++||.||+|+|..|+..+|..+|+.
T Consensus 277 v~~~~~V~~i~~~~~~~~v~GV~~~~~~~g~~~~i~A~~VIlaaG~~~s~~lL~~sgiG 335 (623)
T 3pl8_A 277 LFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFG 335 (623)
T ss_dssp EECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEECEEEEEECSCTTHHHHHHHTTTSS
T ss_pred EEeCCEEEEEEEECCCCEEEEEEEEEcCCCcEEEEECCEEEEcCCCcCCHHHHHhcCCC
Confidence 99999999998322 2367778774 454 68999999999999999888777663
|
| >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=4.4e-08 Score=119.89 Aligned_cols=146 Identities=14% Similarity=0.100 Sum_probs=107.1
Q ss_pred ecCeEEEecCCCCCcCCCCCCCC--cEEEecCHHHHHhh---------hcc--cCCCCeEEEEcCCHHHHHHHHHHhcCC
Q psy2951 1162 DFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNI---------APH--ITPESNVVVIGSSFIGMEAAAFCASKV 1228 (1466)
Q Consensus 1162 ~yd~lvlAtG~~~~~~~~~~g~~--~v~~~~~~~~~~~l---------~~~--~~~~~~vvVvG~g~~g~e~a~~l~~~g 1228 (1466)
.||.+++++|++|+.++++ +.+ +++......+..++ ... .....+|+|||+|++|+.+|..|++.|
T Consensus 37 ~~~~l~~~~g~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIVGgG~aGl~aA~~La~~G 115 (497)
T 2bry_A 37 SFQGLCRALGVESGGGLSQ-YHKIKAQLNYWSAKSLWAKLDKRASQPVYQQGQACTNTKCLVVGAGPCGLRAAVELALLG 115 (497)
T ss_dssp HHHHHHHHHTCCTTCHHHH-HHHHHHTCCSTTTHHHHHHHHHHHTSGGGGGGTTTTTCEEEEECCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCCCcEe-ehhhHHHHHHHHHHHhhhhhhhhhccccccCccccCCCCEEEECccHHHHHHHHHHHHCC
Confidence 4788999999998776665 433 44555556666555 212 234679999999999999999999999
Q ss_pred CeEEEEcCCCcCCcc--------------cc------------------cHHHHHHHHHHHHhCCcEEEcCceEEEEEec
Q psy2951 1229 KSVTVVGRGAVPFQE--------------SL------------------GKEVGERITKLFESKGVKFVMKANVSSFEKN 1276 (1466)
Q Consensus 1229 ~~v~vv~~~~~~~~~--------------~~------------------~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~ 1276 (1466)
.+|+++++.+.+... .+ ...+.+.|.+.+++.||+++++++|++++..
T Consensus 116 ~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~ 195 (497)
T 2bry_A 116 ARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQLLLLKVALLLGVEIHWGVKFTGLQPP 195 (497)
T ss_dssp CEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEECC
T ss_pred CeEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEe
Confidence 999999987643100 00 1456677888888899999999999999832
Q ss_pred -CCCcEEEEEc--C-CC--CeeecCEEEEeeccccCcc
Q psy2951 1277 -EKNDVTAANL--D-NG--TTIPADLVIVGIGTVLNTN 1308 (1466)
Q Consensus 1277 -~~g~~~~v~l--~-~g--~~i~~D~vv~a~G~~p~~~ 1308 (1466)
+++....|.+ . +| .++.+|.||+|+|..+...
T Consensus 196 ~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~r 233 (497)
T 2bry_A 196 PRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVPE 233 (497)
T ss_dssp CSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCCCT
T ss_pred cCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCcccc
Confidence 1233445665 4 66 5789999999999988654
|
| >3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A | Back alignment and structure |
|---|
Probab=98.51 E-value=1.4e-07 Score=115.49 Aligned_cols=149 Identities=12% Similarity=0.058 Sum_probs=86.3
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCc----------cchhc---c-----------c----
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK----------LSKQL---D-----------I---- 93 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~~~~----------~~~~~---~-----------~---- 93 (1466)
.++||+|||||+||++||..|++.|.++.|++...... ....+. +...+ . .
T Consensus 27 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~i-G~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f~~ 105 (651)
T 3ces_A 27 DPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTL-GQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRI 105 (651)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGT-TCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEEEE
T ss_pred CcCCEEEECChHHHHHHHHHHHhCCCCEEEEeeccccc-ccccccccccchhhHHHHHHHHHhccHHHHHhhhcccchhh
Confidence 46899999999999999999999999988876542111 000000 00000 0 0
Q ss_pred ----------------CcccccccChhhhhc-CCeEEEeCceEEEeccccc-cEEEecCCcEEecCEEEEccCCCCCCCC
Q psy2951 94 ----------------KADSILLRTEEFYKD-NDIHVIKGKKIISDSELNE-KKIKLQDGTSIDFTKIYLATGSSPRTIS 155 (1466)
Q Consensus 94 ----------------~~~~~~~~~~~~~~~-~~v~~~~~~~v~~~~~~~~-~~v~~~~~~~~~~d~lviAtG~~~~~~~ 155 (1466)
+...+...+.+.+++ .+++++.+.......+.+. ..|.+.+|..+.+|.||+|||+.+..+.
T Consensus 106 l~~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt~s~~~~ 185 (651)
T 3ces_A 106 LNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKI 185 (651)
T ss_dssp ESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEECCEEEEEESSSBEEEEEETTSEEEEEEEEEECCSTTTCCEE
T ss_pred hhcccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEEEEEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCCCccCcc
Confidence 000111223344555 6899966543322222222 2466777888999999999999876432
Q ss_pred CCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEee
Q psy2951 156 QADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGR 213 (1466)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~ 213 (1466)
+++... . .++ + +| |.+++++|..|.++|.+|+.+..
T Consensus 186 -i~G~~~------~----------~~g-r---iG-g~~a~eLA~~L~~lG~~v~~~~t 221 (651)
T 3ces_A 186 -HIGLDN------Y----------SGG-R---AG-DPPSIPLSRRLRELPLRVGRLKT 221 (651)
T ss_dssp -ECC----------------------------------CCHHHHHHHTTTCCEEEECC
T ss_pred -ccCccc------C----------CCC-C---cc-chhhhHHHHHHHhcCCeEEEecC
Confidence 222211 0 022 3 56 78899999999999999988853
|
| >2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2 d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=5.6e-08 Score=114.34 Aligned_cols=81 Identities=19% Similarity=0.335 Sum_probs=65.3
Q ss_pred eecCchhhhhhhhhhhhhhcCCCCCCCccccceee--cCCEEEcCCCCceeecCCCccccCCC--------CCCCCeEEE
Q psy2951 963 TVGMDPLAAQFAERNIYAVGTKCSHYGAPLVKGSL--GDGRVRCPWHGACFNIATGDIEDFPG--------MDSLPCYKV 1032 (1466)
Q Consensus 963 ~~g~~~~~~~~~~g~~~a~~~~C~h~g~~l~~g~~--~~~~~~cp~h~~~f~~~~g~~~~~p~--------~~~l~~~~v 1032 (1466)
+.+...++.+ .+|+++|+.+.|||.|++|..|.+ .++.+.||||||+|++.+|+|...|. ...|+.|++
T Consensus 48 ~~g~~vvl~R-~~G~v~a~~n~CpHrga~L~~g~~~~~~~~i~CpyHgw~f~~~~G~~~~~p~~p~~~~~~~~~l~~~~v 126 (392)
T 2de6_A 48 LLGENLLVNR-IDGKLYCLKDRCLHRGVQLSVKVECKTKSTITCWYHAWTYRWEDGVLCDILTNPTSAQIGRQKLKTYPV 126 (392)
T ss_dssp ETTEEEEEEE-ETTEEEEEESSCTTTCCCGGGGCCCCSTTEEECTTTCEEEETTTCBEEEETTCTTCTTTTSCBCCBCCE
T ss_pred ECCEEEEEEE-eCCEEEEEeCcCCCCCCCCcCCcccCCCCEEEeCCCCCEEcCCCCccccccCCccccccccCCCceEeE
Confidence 3333334455 478999999999999999999986 36899999999999988999987543 246899999
Q ss_pred EEEcCCEEEEEcc
Q psy2951 1033 TIQNDDSVVVQAR 1045 (1466)
Q Consensus 1033 ~~~~~~~~~~~~~ 1045 (1466)
++ .+|.+++...
T Consensus 127 ~~-~~G~v~v~~~ 138 (392)
T 2de6_A 127 QE-AKGCVFIYLG 138 (392)
T ss_dssp EE-ETTEEEEEES
T ss_pred EE-ECCEEEEEeC
Confidence 98 7888888753
|
| >1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component; rieske center, oxygen binding/activation, substrate bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2 d.129.3.3 PDB: 1z02_A 1z03_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=7.7e-08 Score=114.85 Aligned_cols=82 Identities=20% Similarity=0.411 Sum_probs=65.8
Q ss_pred EeecCchhhhhhhhhhhhhhcCCCCCCCccccceee--cCCEEEcCCCCceeecCCCccccCCC--------CCCCCeEE
Q psy2951 962 LTVGMDPLAAQFAERNIYAVGTKCSHYGAPLVKGSL--GDGRVRCPWHGACFNIATGDIEDFPG--------MDSLPCYK 1031 (1466)
Q Consensus 962 ~~~g~~~~~~~~~~g~~~a~~~~C~h~g~~l~~g~~--~~~~~~cp~h~~~f~~~~g~~~~~p~--------~~~l~~~~ 1031 (1466)
.+.+...++.+ .+|+++|+.+.|||.|++|..|.+ .++.+.||||||+|++.+|+|...|+ ...|+.|+
T Consensus 62 ~~~g~~vvl~r-~~G~v~a~~n~CpHrga~L~~g~~~~~~~~i~CpyHgw~fd~~~G~~~~~p~~p~~~~~~~~~l~~~~ 140 (446)
T 1z01_A 62 QICGVPIVLRR-VNGKVFALKDQCLHRGVRLSEKPTCFTKSTISCWYHGFTFDLETGKLVTIVANPEDKLIGTTGVTTYP 140 (446)
T ss_dssp EETTEEEEEEE-ETTEEEEEESSCTTTCCCGGGSCCCSSTTEEECTTTCEEEETTTCBEEEETTCTTCTTTTSCBCCEEC
T ss_pred EECCEEEEEEE-eCCEEEEEeCcCCCCcCCCCCCccCCCCCEEEeCCCCeEEeCCCCCccccCCCccccCcccCCCcEEE
Confidence 33333333444 588999999999999999999974 57999999999999988999987643 34699999
Q ss_pred EEEEcCCEEEEEcc
Q psy2951 1032 VTIQNDDSVVVQAR 1045 (1466)
Q Consensus 1032 v~~~~~~~~~~~~~ 1045 (1466)
+++ .+|.+++...
T Consensus 141 v~~-~~G~V~v~~~ 153 (446)
T 1z01_A 141 VHE-VNGMIFVFVR 153 (446)
T ss_dssp EEE-ETTEEEEEEC
T ss_pred EEE-ECCEEEEEeC
Confidence 998 7888888754
|
| >2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A | Back alignment and structure |
|---|
Probab=98.44 E-value=1.4e-07 Score=113.30 Aligned_cols=74 Identities=18% Similarity=0.284 Sum_probs=62.6
Q ss_pred hhhhhhhhhhhhcCCCCCCCccccceee-cCCEEEcCCCCceeecCCCccccCCCCC------------CCCeEEEEEEc
Q psy2951 970 AAQFAERNIYAVGTKCSHYGAPLVKGSL-GDGRVRCPWHGACFNIATGDIEDFPGMD------------SLPCYKVTIQN 1036 (1466)
Q Consensus 970 ~~~~~~g~~~a~~~~C~h~g~~l~~g~~-~~~~~~cp~h~~~f~~~~g~~~~~p~~~------------~l~~~~v~~~~ 1036 (1466)
+++..+|+++|+.+.|||.|++|..|.. .++.+.||||||+|++ +|+|+..|... .|+.|+|++ .
T Consensus 65 v~R~~~G~v~a~~n~CpHrga~L~~g~~g~~~~i~CpyHgw~f~~-~G~~~~~P~~~~~~~~~~~~~~~~l~~~~v~~-~ 142 (454)
T 2gbw_A 65 LSHQSDGTFRAFINSCSHRGNQICHADSGNAKAFVCNYHGWVFGQ-DGSLVDVPLESRCYHNSLDKQKLAAKSVRVET-Y 142 (454)
T ss_dssp EEECTTSCEEEEESSCTTTCCCSCCCSEEECSEEECTTTCCEEET-TSCEEECTTTTTTTTTCCCGGGCCCCEEEEEE-E
T ss_pred EEEcCCCCEEEEeccCCCCCCCCcccccCCcCEEEeCCCCCEecC-CCCcccCCcccccccccCCHhhCCCeeEEEEE-E
Confidence 3445688999999999999999998766 5789999999999997 89999887643 488999998 7
Q ss_pred CCEEEEEcc
Q psy2951 1037 DDSVVVQAR 1045 (1466)
Q Consensus 1037 ~~~~~~~~~ 1045 (1466)
+|.+++...
T Consensus 143 ~G~v~v~~~ 151 (454)
T 2gbw_A 143 KGFIFGCHD 151 (454)
T ss_dssp TTEEEEECC
T ss_pred CCEEEEEeC
Confidence 888888754
|
| >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=9.8e-08 Score=116.78 Aligned_cols=145 Identities=14% Similarity=0.082 Sum_probs=103.8
Q ss_pred ecCEEEEcCCCCCCcCCCCCCCC--cEEEecCHHHHHhh---------cc--cCCCCCcEEEECCChHHHHHHHHHhccC
Q psy2951 691 DFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNI---------AP--HITPESNVVVIGSSFIGMEAAAFCASKV 757 (1466)
Q Consensus 691 ~~d~lviAtG~~~~~~~~~~g~~--~~~~~~~~~~~~~~---------~~--~~~~~~~vvVvG~G~~g~e~A~~l~~~g 757 (1466)
.||.+++++|++|+.++++ +.+ .++......+...+ .. ......+|+|||||.+|+.+|..|++.|
T Consensus 37 ~~~~l~~~~g~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIVGgG~aGl~aA~~La~~G 115 (497)
T 2bry_A 37 SFQGLCRALGVESGGGLSQ-YHKIKAQLNYWSAKSLWAKLDKRASQPVYQQGQACTNTKCLVVGAGPCGLRAAVELALLG 115 (497)
T ss_dssp HHHHHHHHHTCCTTCHHHH-HHHHHHTCCSTTTHHHHHHHHHHHTSGGGGGGTTTTTCEEEEECCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCCCcEe-ehhhHHHHHHHHHHHhhhhhhhhhccccccCccccCCCCEEEECccHHHHHHHHHHHHCC
Confidence 4788999999998877665 433 33334444444444 11 1234678999999999999999999999
Q ss_pred CeEEEEeecCccCcc--------------c------------------cCHHHHHHHHHHHHhcCcEEEccceEEEEEec
Q psy2951 758 KSVTVVGRGAVPFQE--------------S------------------LGKEVGERITKLFESKGVKFVMKANVSSFEKN 805 (1466)
Q Consensus 758 ~~V~lv~~~~~~~~~--------------~------------------~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~ 805 (1466)
.+|+|+++.+..... . -..++.+.+.+.+++.||++++++++++++..
T Consensus 116 ~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~ 195 (497)
T 2bry_A 116 ARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQLLLLKVALLLGVEIHWGVKFTGLQPP 195 (497)
T ss_dssp CEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEECC
T ss_pred CeEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEe
Confidence 999999987643100 0 00455667778888899999999999999853
Q ss_pred C-CCceEEEEC--C-CC--cEEecCEEEEccccccCc
Q psy2951 806 E-KNDVTAANL--D-NG--TTIPADLVIVGIGTVLNT 836 (1466)
Q Consensus 806 ~-~~~~~~v~~--~-~g--~~i~~D~vi~a~G~~p~~ 836 (1466)
+ ++....+.+ . +| .++.+|.||+|+|..+..
T Consensus 196 ~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~ 232 (497)
T 2bry_A 196 PRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVP 232 (497)
T ss_dssp CSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCCC
T ss_pred cCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCccc
Confidence 1 222334544 4 56 579999999999998764
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.9e-07 Score=115.62 Aligned_cols=57 Identities=26% Similarity=0.401 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccc
Q psy2951 1247 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTV 1304 (1466)
Q Consensus 1247 ~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~ 1304 (1466)
..+.+.|.+.+++.|++|+++++|++|. .+++++..|+++||+++.||.||++++..
T Consensus 221 ~~l~~aL~~~~~~~Gg~I~~~~~V~~I~-~~~~~~~gV~~~~g~~~~ad~VV~~a~~~ 277 (501)
T 4dgk_A 221 GALVQGMIKLFQDLGGEVVLNARVSHME-TTGNKIEAVHLEDGRRFLTQAVASNADVV 277 (501)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEE-EETTEEEEEEETTSCEEECSCEEECCC--
T ss_pred cchHHHHHHHHHHhCCceeeecceeEEE-eeCCeEEEEEecCCcEEEcCEEEECCCHH
Confidence 4677889999999999999999999998 56778999999999999999999987643
|
| >1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=6e-07 Score=111.99 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=30.3
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 630 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~ 630 (1466)
.+||||||||+||++||+.|++.|....|+++|+..
T Consensus 5 ~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~ 40 (602)
T 1kf6_A 5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVY 40 (602)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSC
T ss_pred cCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCC
Confidence 479999999999999999999999323388888864
|
| >2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A | Back alignment and structure |
|---|
Probab=98.39 E-value=2.1e-06 Score=106.76 Aligned_cols=60 Identities=18% Similarity=0.275 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhC-CcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccCc
Q psy2951 1247 KEVGERITKLFESK-GVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNT 1307 (1466)
Q Consensus 1247 ~~~~~~l~~~~~~~-gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~~ 1307 (1466)
..+.+.|.+.+++. ||+++.+ +|+++...+++.+..|.+.+|+++.+|.||.|+|.....
T Consensus 194 ~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S~~ 254 (550)
T 2e4g_A 194 HLVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLL 254 (550)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGCCC
T ss_pred HHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCchhh
Confidence 46778888888888 9999999 999997444566778999999889999999999987653
|
| >1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=4.5e-07 Score=113.14 Aligned_cols=35 Identities=20% Similarity=0.297 Sum_probs=31.2
Q ss_pred CcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCC
Q psy2951 1067 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 1101 (1466)
Q Consensus 1067 ~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~ 1101 (1466)
.+|||||||+||++||..|++.|.+.+|+|||+.+
T Consensus 6 ~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~ 40 (602)
T 1kf6_A 6 ADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVY 40 (602)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSC
T ss_pred CCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCC
Confidence 58999999999999999999999333999999974
|
| >3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=98.38 E-value=4.4e-07 Score=111.12 Aligned_cols=146 Identities=16% Similarity=0.193 Sum_probs=92.9
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC-CCCCCCCccch----------h------------------cc
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN-FLPYDRVKLSK----------Q------------------LD 644 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~-~~~~~~~~~~~----------~------------------~~ 644 (1466)
..+||+|||||+||++||..|++.|.+ |+++++.. .++...+.... . +.
T Consensus 20 ~~yDVIVIGgG~AGl~AAlaLAr~G~k--VlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f~ 97 (641)
T 3cp8_A 20 HMYDVIVVGAGHAGCEAALAVARGGLH--CLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQFR 97 (641)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCC--EEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEEE
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCc--EEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCchh
Confidence 358999999999999999999999988 77777763 12211110000 0 00
Q ss_pred ----------------cCcccccccCHhHhhhC-CcEEEEceEEEEeccccccE---EEccCCCEEecCEEEEcCCCCCC
Q psy2951 645 ----------------IKADSILLRTEEFYKDN-DIHVIKGKKIISDSELNEKK---IKLQDGTSIDFTKIYLATGSSPR 704 (1466)
Q Consensus 645 ----------------~~~~~~~~~~~~~~~~~-gv~~~~~~~v~~i~~~~~~~---v~~~~~~~~~~d~lviAtG~~~~ 704 (1466)
.+...+...+.+.+++. |++++.+ .|..+ ..++.. |.+.+|.++.+|+||+|||+.+.
T Consensus 98 ~l~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~~-~V~~L-~~d~g~V~GV~t~~G~~i~Ad~VVLATG~~s~ 175 (641)
T 3cp8_A 98 MLNRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQD-TVIGV-SANSGKFSSVTVRSGRAIQAKAAILACGTFLN 175 (641)
T ss_dssp EECSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEEC-CEEEE-EEETTEEEEEEETTSCEEEEEEEEECCTTCBT
T ss_pred hcccccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEee-EEEEE-EecCCEEEEEEECCCcEEEeCEEEECcCCCCC
Confidence 00001122233445554 9999766 48776 332222 66677889999999999999877
Q ss_pred cCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEe
Q psy2951 705 TISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVG 764 (1466)
Q Consensus 705 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~ 764 (1466)
.+..+ |... +. +.+++ |+.++++++..|.+.|.+|..+.
T Consensus 176 ~~i~~-G~~~-~~----------------~g~~v---G~~~a~~la~~L~~~G~kv~~l~ 214 (641)
T 3cp8_A 176 GLIHI-GMDH-FP----------------GGRST---AEPPVEGLTESLASLGFSFGRLK 214 (641)
T ss_dssp CEEEE-TTEE-EE----------------CSSST---TSCCBCSHHHHHHHTTCCEEEEE
T ss_pred cccee-eeee-ec----------------ccccc---CCchhhhhHHHHHhCCceEEeec
Confidence 65555 4331 10 12221 46778899999999999887664
|
| >2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=1.3e-07 Score=113.32 Aligned_cols=74 Identities=16% Similarity=0.230 Sum_probs=62.5
Q ss_pred hhhhhhhhhhhhcCCCCCCCccccceee-cCCEEEcCCCCceeecCCCccccCCCC------------CCCCeEE-EEEE
Q psy2951 970 AAQFAERNIYAVGTKCSHYGAPLVKGSL-GDGRVRCPWHGACFNIATGDIEDFPGM------------DSLPCYK-VTIQ 1035 (1466)
Q Consensus 970 ~~~~~~g~~~a~~~~C~h~g~~l~~g~~-~~~~~~cp~h~~~f~~~~g~~~~~p~~------------~~l~~~~-v~~~ 1035 (1466)
+.+..+|+++|+.+.|||.|++|..|.. .++.+.||||||+|++ +|+|+..|.. ..|+.|+ |++
T Consensus 64 v~R~~~G~v~a~~n~CpHrga~L~~g~~g~~~~l~CpyHgw~f~~-~G~~~~~P~~~~~~~~~~~~~~~~l~~~~~v~~- 141 (447)
T 2bmo_A 64 VSRQNDGSVRAFLNVCRHRGKTLVHAEAGNAKGFVCGYHGWGYGS-NGELQSVPFEKELYGDAIKKKCLGLKEVPRIES- 141 (447)
T ss_dssp EEECTTSCEEEEESBCTTTCCBCCCSSEEECSEEECTTTCCEEET-TSCEEECTTHHHHTGGGCCGGGCCCCBCSEEEE-
T ss_pred EEECCCCCEEEEeccCcCCCCCccccccCCcCeEECCCCcchhcC-CCcccccCcccccccccCCHhHCCCcccceEEE-
Confidence 4455688999999999999999998866 5789999999999997 9999988753 2689997 887
Q ss_pred cCCEEEEEcc
Q psy2951 1036 NDDSVVVQAR 1045 (1466)
Q Consensus 1036 ~~~~~~~~~~ 1045 (1466)
.+|.+++...
T Consensus 142 ~~G~v~v~~~ 151 (447)
T 2bmo_A 142 FHGFIYGCFD 151 (447)
T ss_dssp ETTEEEEESC
T ss_pred ECCEEEEEcC
Confidence 7889998754
|
| >3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.34 E-value=6.8e-07 Score=108.96 Aligned_cols=111 Identities=18% Similarity=0.226 Sum_probs=74.2
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCC-----------------C-----CCCCc--------c--
Q psy2951 592 SGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFL-----------------P-----YDRVK--------L-- 639 (1466)
Q Consensus 592 ~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~-----------------~-----~~~~~--------~-- 639 (1466)
....+||+||||||||++||+.|++.|++ |+++|+.... + +.... +
T Consensus 104 ~~~~~DVVIVGgGpaGL~aA~~La~~G~k--V~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~ 181 (549)
T 3nlc_A 104 ENLTERPIVIGFGPCGLFAGLVLAQMGFN--PIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYS 181 (549)
T ss_dssp TTCCCCCEEECCSHHHHHHHHHHHHTTCC--CEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCC
T ss_pred cCCCCCEEEECcCHHHHHHHHHHHHCCCe--EEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEE
Confidence 34458999999999999999999999988 7777776321 0 00000 0
Q ss_pred --ch-------------hcccC---------------cccccccCHhHhhhCCcEEEEceEEEEeccccc--cEEEccCC
Q psy2951 640 --SK-------------QLDIK---------------ADSILLRTEEFYKDNDIHVIKGKKIISDSELNE--KKIKLQDG 687 (1466)
Q Consensus 640 --~~-------------~~~~~---------------~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~--~~v~~~~~ 687 (1466)
.. ..+.. ...+...+.+.+++.|++++++++|+.+...+. ..|.+.++
T Consensus 182 ~i~~~~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G 261 (549)
T 3nlc_A 182 QVKDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNG 261 (549)
T ss_dssp CSCCTTCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTS
T ss_pred EeccccccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCC
Confidence 00 00000 012233344556678999999999998832222 23777788
Q ss_pred CEEecCEEEEcCCCCCC
Q psy2951 688 TSIDFTKIYLATGSSPR 704 (1466)
Q Consensus 688 ~~~~~d~lviAtG~~~~ 704 (1466)
+++.+|.||+|+|..+.
T Consensus 262 ~~i~Ad~VVlA~G~~s~ 278 (549)
T 3nlc_A 262 EEIKSRHVVLAVGHSAR 278 (549)
T ss_dssp CEEECSCEEECCCTTCH
T ss_pred CEEECCEEEECCCCChh
Confidence 89999999999998774
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=7.9e-07 Score=105.39 Aligned_cols=107 Identities=16% Similarity=0.189 Sum_probs=74.8
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCcc--c-------------hhc----------------
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKL--S-------------KQL---------------- 643 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~--~-------------~~~---------------- 643 (1466)
.++|+|||||++|+++|..|+++|.+ |+++|+.+......... . ..+
T Consensus 11 ~~dVvIVGaG~aGl~~A~~L~~~G~~--v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g 88 (379)
T 3alj_A 11 TRRAEVAGGGFAGLTAAIALKQNGWD--VRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMHN 88 (379)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCE--EEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEETT
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCC--EEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeCC
Confidence 58999999999999999999999987 88888875443110000 0 000
Q ss_pred --------------ccCcccccccCHhHhhhCCcEEEEceEEEEeccccccEEEccCCCEEecCEEEEcCCCCCCc
Q psy2951 644 --------------DIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRT 705 (1466)
Q Consensus 644 --------------~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~ 705 (1466)
......+...+.+.+.+.|++++++++|+.+.. +. .+++.+|.++.+|.||.|+|.....
T Consensus 89 ~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~-~~-~v~~~~g~~~~ad~vV~AdG~~s~v 162 (379)
T 3alj_A 89 KSVSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADP-VG-RLTLQTGEVLEADLIVGADGVGSKV 162 (379)
T ss_dssp EEEEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEET-TT-EEEETTSCEEECSEEEECCCTTCHH
T ss_pred ceeeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEe-CC-EEEECCCCEEEcCEEEECCCccHHH
Confidence 000111222334455667999999999999843 55 8888888899999999999976543
|
| >1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A | Back alignment and structure |
|---|
Probab=98.33 E-value=1.8e-07 Score=112.11 Aligned_cols=74 Identities=14% Similarity=0.232 Sum_probs=61.8
Q ss_pred hhhhhhhhhhhhcCCCCCCCccccceee-cCCEEEcCCCCceeecCCCccccCCCC-----------CCCCeEEEEEEcC
Q psy2951 970 AAQFAERNIYAVGTKCSHYGAPLVKGSL-GDGRVRCPWHGACFNIATGDIEDFPGM-----------DSLPCYKVTIQND 1037 (1466)
Q Consensus 970 ~~~~~~g~~~a~~~~C~h~g~~l~~g~~-~~~~~~cp~h~~~f~~~~g~~~~~p~~-----------~~l~~~~v~~~~~ 1037 (1466)
+++..+|+++|+.+.|||.|++|..|.. .++.+.||||||+|++ +|+|+..|.. ..|+.|+|++ .+
T Consensus 83 v~R~~~G~v~a~~n~CpHrga~L~~g~~g~~~~i~CpyHgw~fd~-~G~~~~~P~~~~~~~~~~~~~~~L~~~~v~~-~~ 160 (460)
T 1uli_A 83 VVRQKNGEIRVFLNQCRHRGMRICRADGGNAKSFTCSYHGWAYDT-GGNLVSVPFEEQAFPGLRKEDWGPLQARVET-YK 160 (460)
T ss_dssp EEECTTSCEEEEESCCTTTCCCSCCSSEEECSCEECTTTCCEECT-TCCEEECTTHHHHCTTCCGGGSSCCEEEEEE-ET
T ss_pred EEEcCCCCEEEEeeeCCCCCCCCccccCCCCCEEEcCCCCCEEeC-CCCEeeCCccccccCCCCHhHcCCceeeEEE-EC
Confidence 3444688999999999999999998765 4678999999999997 9999988753 2388999998 78
Q ss_pred CEEEEEcc
Q psy2951 1038 DSVVVQAR 1045 (1466)
Q Consensus 1038 ~~~~~~~~ 1045 (1466)
|.+++...
T Consensus 161 G~V~v~~~ 168 (460)
T 1uli_A 161 GLIFANWD 168 (460)
T ss_dssp TEEEEECC
T ss_pred CEEEEEeC
Confidence 88988654
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.33 E-value=5.7e-07 Score=106.82 Aligned_cols=107 Identities=16% Similarity=0.252 Sum_probs=71.9
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCC-------CCc-------cchhcc---------------
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD-------RVK-------LSKQLD--------------- 644 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~-------~~~-------~~~~~~--------------- 644 (1466)
..+||+|||||+||++||+.|+++|.+ |+++|+.+..+.. .+. ......
T Consensus 26 ~~~dViIIGgG~AGl~aA~~La~~G~~--V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~ 103 (417)
T 3v76_A 26 EKQDVVIIGAGAAGMMCAIEAGKRGRR--VLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRP 103 (417)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHTTCC--EEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCH
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCc--EEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCH
Confidence 468999999999999999999999987 8888887643210 000 000000
Q ss_pred -------------------------cCcccccccCHhHhhhCCcEEEEceEEEEeccc-cccEEEccCCCEEecCEEEEc
Q psy2951 645 -------------------------IKADSILLRTEEFYKDNDIHVIKGKKIISDSEL-NEKKIKLQDGTSIDFTKIYLA 698 (1466)
Q Consensus 645 -------------------------~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~-~~~~v~~~~~~~~~~d~lviA 698 (1466)
.....+...+.+.+++.|++++++++|+.+... ....|.+.++ ++.+|+||+|
T Consensus 104 ~~~~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~VIlA 182 (417)
T 3v76_A 104 QDFVALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAG-TVDAASLVVA 182 (417)
T ss_dssp HHHHHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTE-EEEESEEEEC
T ss_pred HHHHHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCc-EEEeeEEEEC
Confidence 001123333445566779999999999888322 2345666666 8999999999
Q ss_pred CCCCC
Q psy2951 699 TGSSP 703 (1466)
Q Consensus 699 tG~~~ 703 (1466)
||...
T Consensus 183 tG~~S 187 (417)
T 3v76_A 183 SGGKS 187 (417)
T ss_dssp CCCSS
T ss_pred CCCcc
Confidence 99765
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=7.5e-07 Score=105.56 Aligned_cols=109 Identities=17% Similarity=0.159 Sum_probs=70.8
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCc-------------cchhc-----------------
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK-------------LSKQL----------------- 91 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~~~~-------------~~~~~----------------- 91 (1466)
.++||+|||||++|+++|..|++.|.++.|+|............. +...+
T Consensus 10 ~~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~ 89 (379)
T 3alj_A 10 KTRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMHNK 89 (379)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEETTE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeCCc
Confidence 357999999999999999999999998877654332211000000 00000
Q ss_pred -------------ccCcccccccChhhhhcCCeEEEeCceEEEeccccccEEEecCCcEEecCEEEEccCCCCC
Q psy2951 92 -------------DIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPR 152 (1466)
Q Consensus 92 -------------~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~v~~~~~~~~~~d~lviAtG~~~~ 152 (1466)
......+...+.+.+.+.+++++.++.+..... +. ++++.++.++.+|.||.|+|....
T Consensus 90 ~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~-~~-~v~~~~g~~~~ad~vV~AdG~~s~ 161 (379)
T 3alj_A 90 SVSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADP-VG-RLTLQTGEVLEADLIVGADGVGSK 161 (379)
T ss_dssp EEEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEET-TT-EEEETTSCEEECSEEEECCCTTCH
T ss_pred eeeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEe-CC-EEEECCCCEEEcCEEEECCCccHH
Confidence 000011122234445567999999988766443 44 888888889999999999998654
|
| >3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.8e-06 Score=105.77 Aligned_cols=149 Identities=15% Similarity=0.167 Sum_probs=88.2
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCccc----------hhc---c-----------c----
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLS----------KQL---D-----------I---- 93 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~~~~~~~----------~~~---~-----------~---- 93 (1466)
.++||+|||||+||++||..|++.|.+|.|++...... ....+..+ ..+ . .
T Consensus 20 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~i-G~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f~~ 98 (641)
T 3cp8_A 20 HMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAV-ARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQFRM 98 (641)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGT-TCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEEEE
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEeccccc-CCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCchhh
Confidence 35899999999999999999999999988876542111 10000000 000 0 0
Q ss_pred ----------------CcccccccChhhhhc-CCeEEEeCceEEEeccccccE-EEecCCcEEecCEEEEccCCCCCCCC
Q psy2951 94 ----------------KADSILLRTEEFYKD-NDIHVIKGKKIISDSELNEKK-IKLQDGTSIDFTKIYLATGSSPRTIS 155 (1466)
Q Consensus 94 ----------------~~~~~~~~~~~~~~~-~~v~~~~~~~v~~~~~~~~~~-v~~~~~~~~~~d~lviAtG~~~~~~~ 155 (1466)
+...+...+.+.+++ .+++++.+.......+.+... |.+.+|..+.+|.||+|||+.+..+.
T Consensus 99 l~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~~~V~~L~~d~g~V~GV~t~~G~~i~Ad~VVLATG~~s~~~i 178 (641)
T 3cp8_A 99 LNRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQDTVIGVSANSGKFSSVTVRSGRAIQAKAAILACGTFLNGLI 178 (641)
T ss_dssp ECSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEETTSCEEEEEEEEECCTTCBTCEE
T ss_pred cccccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEeeEEEEEEecCCEEEEEEECCCcEEEeCEEEECcCCCCCccc
Confidence 000112223344555 489987764433222222222 66778889999999999999876332
Q ss_pred CCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEe
Q psy2951 156 QADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVG 212 (1466)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~ 212 (1466)
.+ +... + ++.+++ |+.++++++..|.+.|.+|+.+.
T Consensus 179 ~~-G~~~-~----------------~~g~~v---G~~~a~~la~~L~~~G~kv~~l~ 214 (641)
T 3cp8_A 179 HI-GMDH-F----------------PGGRST---AEPPVEGLTESLASLGFSFGRLK 214 (641)
T ss_dssp EE-TTEE-E----------------ECSSST---TSCCBCSHHHHHHHTTCCEEEEE
T ss_pred ee-eeee-e----------------cccccc---CCchhhhhHHHHHhCCceEEeec
Confidence 11 1110 0 011221 45678899999999999887654
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=98.24 E-value=6.5e-06 Score=97.22 Aligned_cols=66 Identities=11% Similarity=0.057 Sum_probs=51.4
Q ss_pred cHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCC--CeeecCEEEEeeccccCccccccC
Q psy2951 1246 GKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG--TTIPADLVIVGIGTVLNTNYLDGK 1313 (1466)
Q Consensus 1246 ~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g--~~i~~D~vv~a~G~~p~~~~~~~~ 1313 (1466)
+..+.+.|.+.++++|++++++++|+++.. +++....|.+.+| .++.||.||+|+|.... .+++..
T Consensus 149 ~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~-~~~~~~~v~~~~g~~~~~~a~~VV~A~G~~s~-~l~~~~ 216 (369)
T 3dme_A 149 SHALMLAYQGDAESDGAQLVFHTPLIAGRV-RPEGGFELDFGGAEPMTLSCRVLINAAGLHAP-GLARRI 216 (369)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEE-CTTSSEEEEECTTSCEEEEEEEEEECCGGGHH-HHHHTE
T ss_pred HHHHHHHHHHHHHHCCCEEECCCEEEEEEE-cCCceEEEEECCCceeEEEeCEEEECCCcchH-HHHHHh
Confidence 457888899999999999999999999983 3334345888888 48999999999997643 444444
|
| >1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=2.8e-06 Score=104.63 Aligned_cols=54 Identities=24% Similarity=0.350 Sum_probs=38.1
Q ss_pred CccEEECCCCCcCCCCEEEecccccccCccCCCCcceec--cHHHHHHHHHHHHHHhcCC
Q psy2951 297 QKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIG--HYQLAQYHGRIAALNMVEK 354 (1466)
Q Consensus 297 ~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~--~~~~A~~~g~~aa~~i~~~ 354 (1466)
.|.|.+|...||++||+||+|+|+... ++|.. +.+ ....+.-.|++|+++++..
T Consensus 354 ~GGi~vd~~~~t~I~GLyAaGE~a~~g---~hGan-rl~gnsl~~~~vfG~~Ag~~aa~~ 409 (540)
T 1chu_A 354 CGGVMVDDHGRTDVEGLYAIGEVSYTG---LHGAN-RMASNSLLECLVYGWSAAEDITRR 409 (540)
T ss_dssp SCEEECCTTCBCSSBTEEECGGGEECS---SSTTS-CCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcEEECCCCCCccCCEEecccccccc---ccCCC-cCcchhHHHHHHHHHHHHHHHHHh
Confidence 478999999999999999999998432 12222 222 2334667789998888643
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=1.8e-06 Score=104.33 Aligned_cols=110 Identities=22% Similarity=0.338 Sum_probs=73.1
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCC-------CCCccc------h---hc------------
Q psy2951 592 SGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY-------DRVKLS------K---QL------------ 643 (1466)
Q Consensus 592 ~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~-------~~~~~~------~---~~------------ 643 (1466)
....+||+|||||+||+++|+.|+++|.+ |+++|+.+.... ..+.+. . .+
T Consensus 23 ~~~~~dVvIIGgG~aGl~aA~~la~~G~~--V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (447)
T 2i0z_A 23 NAMHYDVIVIGGGPSGLMAAIGAAEEGAN--VLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFS 100 (447)
T ss_dssp --CCCSEEEECCSHHHHHHHHHHHHTTCC--EEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHH
T ss_pred ccCCCCEEEECCcHHHHHHHHHHHHCCCC--EEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHH
Confidence 34458999999999999999999999987 888888754321 000000 0 00
Q ss_pred --------------cc---------------CcccccccCHhHhhhCCcEEEEceEEEEeccccc--cEEEccCCCEEec
Q psy2951 644 --------------DI---------------KADSILLRTEEFYKDNDIHVIKGKKIISDSELNE--KKIKLQDGTSIDF 692 (1466)
Q Consensus 644 --------------~~---------------~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~--~~v~~~~~~~~~~ 692 (1466)
+. ....+...+.+.+++.|++++++++|+.+...+. ..|.+.++.++.+
T Consensus 101 ~~~~~~~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~i~A 180 (447)
T 2i0z_A 101 IFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLET 180 (447)
T ss_dssp HSCHHHHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEEC
T ss_pred hcCHHHHHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCCCEEEC
Confidence 00 0012222334456678999999999998832222 4567777777999
Q ss_pred CEEEEcCCCCC
Q psy2951 693 TKIYLATGSSP 703 (1466)
Q Consensus 693 d~lviAtG~~~ 703 (1466)
|.||+|||...
T Consensus 181 d~VVlAtGg~s 191 (447)
T 2i0z_A 181 NHVVIAVGGKS 191 (447)
T ss_dssp SCEEECCCCSS
T ss_pred CEEEECCCCCc
Confidence 99999999766
|
| >1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=5.3e-06 Score=102.19 Aligned_cols=35 Identities=11% Similarity=0.309 Sum_probs=30.8
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENF 631 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~ 631 (1466)
...||||||||+|||+||+.|++ |.+ |+++|+...
T Consensus 7 ~~~DVvVVG~G~AGl~aAl~la~-G~~--V~vlEk~~~ 41 (540)
T 1chu_A 7 HSCDVLIIGSGAAGLSLALRLAD-QHQ--VIVLSKGPV 41 (540)
T ss_dssp EECSEEEECCSHHHHHHHHHHTT-TSC--EEEECSSCT
T ss_pred CCCCEEEECccHHHHHHHHHHhc-CCc--EEEEECCCC
Confidence 35799999999999999999999 987 888888754
|
| >3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.21 E-value=2.4e-06 Score=104.16 Aligned_cols=113 Identities=20% Similarity=0.289 Sum_probs=89.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcC------------------------------------C----cc-
Q psy2951 1205 ESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP------------------------------------F----QE- 1243 (1466)
Q Consensus 1205 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~------------------------------------~----~~- 1243 (1466)
..+|+|||+|..|+.+|..|++.|.+|+++++.+.+ + ..
T Consensus 107 ~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i~~~ 186 (549)
T 3nlc_A 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDP 186 (549)
T ss_dssp CCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCSCCT
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEEeccc
Confidence 468999999999999999999999999999987432 0 00
Q ss_pred --------------------------cc----cHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeee
Q psy2951 1244 --------------------------SL----GKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIP 1293 (1466)
Q Consensus 1244 --------------------------~~----~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~ 1293 (1466)
.+ ...+.+.+.+.+++.|++++++++|+++. .+++++..|.+.+|+++.
T Consensus 187 ~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~-~~~~~v~gV~l~~G~~i~ 265 (549)
T 3nlc_A 187 NFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLH-MEDGQITGVTLSNGEEIK 265 (549)
T ss_dssp TCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEE-ESSSBEEEEEETTSCEEE
T ss_pred cccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEE-EeCCEEEEEEECCCCEEE
Confidence 00 04456667788889999999999999998 456678889999999999
Q ss_pred cCEEEEeeccccCc--cccccCCceee
Q psy2951 1294 ADLVIVGIGTVLNT--NYLDGKGVELN 1318 (1466)
Q Consensus 1294 ~D~vv~a~G~~p~~--~~~~~~gl~~~ 1318 (1466)
||.||+|+|..+.. .++...|+...
T Consensus 266 Ad~VVlA~G~~s~~~~~~l~~~Gi~~~ 292 (549)
T 3nlc_A 266 SRHVVLAVGHSARDTFEMLHERGVYME 292 (549)
T ss_dssp CSCEEECCCTTCHHHHHHHHHTTCCCE
T ss_pred CCEEEECCCCChhhHHHHHHHcCCCcc
Confidence 99999999998853 24555555433
|
| >2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A | Back alignment and structure |
|---|
Probab=98.20 E-value=7.7e-07 Score=107.13 Aligned_cols=74 Identities=19% Similarity=0.376 Sum_probs=58.6
Q ss_pred hhhhhhhhhhhhcCCCCCCCccccceeec-CCEEEcCCCCceeecCCCccccCCCCC------------CCCeE-EEEEE
Q psy2951 970 AAQFAERNIYAVGTKCSHYGAPLVKGSLG-DGRVRCPWHGACFNIATGDIEDFPGMD------------SLPCY-KVTIQ 1035 (1466)
Q Consensus 970 ~~~~~~g~~~a~~~~C~h~g~~l~~g~~~-~~~~~cp~h~~~f~~~~g~~~~~p~~~------------~l~~~-~v~~~ 1035 (1466)
+++..+|+++|+.+.|||.|++|..|... ++.+.||||||+|++ +|+|+..|... .|..+ .+++
T Consensus 73 v~R~~~G~v~a~~n~C~Hrga~L~~g~~~~~~~i~CpyHgw~f~~-~G~~~~~P~~~~~~~~~~~~~~~~l~~~p~ve~- 150 (470)
T 2b1x_A 73 VCRDEGGEIRGHLNACRHRGMQVCRAEMGNTSHFRCPYHGWTYSN-TGSLVGVPAGKDAYGNQLKKSDWNLRPMPNLAS- 150 (470)
T ss_dssp EEECTTSCEEEEESSCTTTCCCSCCSSEEECSEEECTTTCCEEET-TSCEEECTTTTTTTTTCCCGGGGSCCBCSEEEE-
T ss_pred EEEcCCCCEEEEecccCCCCCEeeccCcCCCCEEEECCCCCeecC-CCceeecCcccccccccCCHhhCCCcccceEEE-
Confidence 44556889999999999999999988765 479999999999997 99999888642 24445 3332
Q ss_pred cCCEEEEEcc
Q psy2951 1036 NDDSVVVQAR 1045 (1466)
Q Consensus 1036 ~~~~~~~~~~ 1045 (1466)
.+|.+++...
T Consensus 151 ~~G~Vfv~~~ 160 (470)
T 2b1x_A 151 YKGLIFGSLD 160 (470)
T ss_dssp ETTEEEEESC
T ss_pred ECCEEEEEeC
Confidence 5889998754
|
| >3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* 2yfl_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=1.1e-06 Score=103.72 Aligned_cols=76 Identities=17% Similarity=0.297 Sum_probs=62.2
Q ss_pred hhhhhhhhhhhhcCCCCCCCcccccee-ecCCEEEcCCCCceeecCCCccccCCCC------------------CCCCeE
Q psy2951 970 AAQFAERNIYAVGTKCSHYGAPLVKGS-LGDGRVRCPWHGACFNIATGDIEDFPGM------------------DSLPCY 1030 (1466)
Q Consensus 970 ~~~~~~g~~~a~~~~C~h~g~~l~~g~-~~~~~~~cp~h~~~f~~~~g~~~~~p~~------------------~~l~~~ 1030 (1466)
+++..+|+++|+.+.|||.|++|..|. ..++.+.||||||+|++ +|+|...|.. ..|..|
T Consensus 85 v~R~~dG~v~A~~n~C~Hrga~L~~g~~g~~~~i~CpyHgw~fd~-~G~~~~~P~~~~~~~~~~~~~~~~~~~~~~L~~~ 163 (457)
T 3gzx_A 85 MVRQKDQSIKVFLNQCRHRGMRIVRSDGGNAKAFTCTYHGWAYDI-AGNLVNVPFEKEAFCDKKEGDCGFDKADWGPLQA 163 (457)
T ss_dssp EEECTTSCEEEEESCCTTTCCCSCCSSEEECSEEECTTTCCEEET-TSCEEECTTHHHHTCSSSTTTTSCCGGGCCCCEE
T ss_pred EEECCCCeEEEEeCcCCCCCcCccCCCCCcCCEEEcCCCCCEecC-CCcceecCccccccccccccccccChhhCCCceE
Confidence 445568999999999999999999875 56789999999999996 8999877652 137889
Q ss_pred EEEEEcCCEEEEEcchh
Q psy2951 1031 KVTIQNDDSVVVQARKD 1047 (1466)
Q Consensus 1031 ~v~~~~~~~~~~~~~~~ 1047 (1466)
+|++ ..|.++++....
T Consensus 164 ~v~e-~~G~Vfv~~~~~ 179 (457)
T 3gzx_A 164 RVET-YKGLVFANWDPE 179 (457)
T ss_dssp EEEE-ETTEEEEESCTT
T ss_pred eEEE-ECCEEEEecCCC
Confidence 8887 788999976543
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=98.18 E-value=1.7e-06 Score=104.52 Aligned_cols=107 Identities=21% Similarity=0.325 Sum_probs=72.1
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCC-------CCCCCc------hh---hc------------c
Q psy2951 1065 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY-------DRVKLS------KQ---LD------------I 1116 (1466)
Q Consensus 1065 ~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~-------~~~~l~------~~---~~------------~ 1116 (1466)
...+|+|||||+||+++|..|++.|. +|+|||+.+.... .+..+. .. +. .
T Consensus 25 ~~~dVvIIGgG~aGl~aA~~la~~G~--~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (447)
T 2i0z_A 25 MHYDVIVIGGGPSGLMAAIGAAEEGA--NVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIF 102 (447)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTC--CEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHS
T ss_pred CCCCEEEECCcHHHHHHHHHHHHCCC--CEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhc
Confidence 34789999999999999999999998 9999999864320 000000 00 00 0
Q ss_pred --------------Cc---------------ccccccChhhhccCCcEEEcCCeEEEeecCCCC---eEEecCCcEEecC
Q psy2951 1117 --------------KA---------------DSILLRTEEFYKDNDIHVIKGKKIISDSELNEK---KIKLQDGTSIDFT 1164 (1466)
Q Consensus 1117 --------------~~---------------~~~~~~~~~~~~~~~v~~~~~~~v~~i~d~~~~---~v~~~~g~~~~yd 1164 (1466)
.. ..+.....+.+++.|++++.+++|+++ ..+.. .|.+.+|..+.+|
T Consensus 103 ~~~~~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i-~~~~~~v~~V~~~~G~~i~Ad 181 (447)
T 2i0z_A 103 NNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETI-EYENGQTKAVILQTGEVLETN 181 (447)
T ss_dssp CHHHHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEE-EEETTEEEEEEETTCCEEECS
T ss_pred CHHHHHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEE-EecCCcEEEEEECCCCEEECC
Confidence 00 000000112344569999999999999 64333 4777888779999
Q ss_pred eEEEecCCCC
Q psy2951 1165 KIYLATGSSP 1174 (1466)
Q Consensus 1165 ~lvlAtG~~~ 1174 (1466)
.||+|||...
T Consensus 182 ~VVlAtGg~s 191 (447)
T 2i0z_A 182 HVVIAVGGKS 191 (447)
T ss_dssp CEEECCCCSS
T ss_pred EEEECCCCCc
Confidence 9999999866
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.18 E-value=3.1e-06 Score=101.95 Aligned_cols=59 Identities=19% Similarity=0.193 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCCeEEEEcCCCc--EEeccEEEEeecccc
Q psy2951 224 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGT--TIPADLVIVGIGTVL 282 (1466)
Q Consensus 224 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~~~g~--~i~~D~Vi~a~G~~p 282 (1466)
..+.+.+.+.+++.|++++.+++|++++.++++....+.+.+|+ ++.+|.||.|+|...
T Consensus 106 ~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~~s 166 (421)
T 3nix_A 106 GNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYGR 166 (421)
T ss_dssp HHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECCGGGC
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCCCch
Confidence 45566777777888999999999999987644334456667887 799999999999765
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.6e-05 Score=93.76 Aligned_cols=67 Identities=12% Similarity=0.106 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCC--cEEecCEEEEccccccCccccccC-Cc
Q psy2951 776 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG--TTIPADLVIVGIGTVLNTNYLDGK-GV 844 (1466)
Q Consensus 776 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~~~~~~~-gl 844 (1466)
..+...+.+.+++.|++++++++|+++...+++ ...+.+.+| .++.+|.||+|+|.... .+++.+ |+
T Consensus 150 ~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~-~~~v~~~~g~~~~~~a~~VV~A~G~~s~-~l~~~~~g~ 219 (369)
T 3dme_A 150 HALMLAYQGDAESDGAQLVFHTPLIAGRVRPEG-GFELDFGGAEPMTLSCRVLINAAGLHAP-GLARRIEGI 219 (369)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEECTTS-SEEEEECTTSCEEEEEEEEEECCGGGHH-HHHHTEETS
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCc-eEEEEECCCceeEEEeCEEEECCCcchH-HHHHHhcCC
Confidence 567788888899999999999999999854433 235777777 48999999999998643 455554 44
|
| >1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... | Back alignment and structure |
|---|
Probab=98.14 E-value=1.1e-06 Score=108.82 Aligned_cols=52 Identities=15% Similarity=0.201 Sum_probs=40.0
Q ss_pred HHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccc
Q psy2951 1251 ERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTV 1304 (1466)
Q Consensus 1251 ~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~ 1304 (1466)
.....+.+..|++++++++|++|+ .+++.+. |.+.+|+++.||.||++++..
T Consensus 216 ~l~~~l~~~lg~~i~~~~~V~~i~-~~~~~v~-v~~~~g~~~~ad~VI~a~p~~ 267 (520)
T 1s3e_A 216 QVSERIMDLLGDRVKLERPVIYID-QTRENVL-VETLNHEMYEAKYVISAIPPT 267 (520)
T ss_dssp HHHHHHHHHHGGGEESSCCEEEEE-CSSSSEE-EEETTSCEEEESEEEECSCGG
T ss_pred HHHHHHHHHcCCcEEcCCeeEEEE-ECCCeEE-EEECCCeEEEeCEEEECCCHH
Confidence 334444455588999999999998 4444544 888999999999999998864
|
| >2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* | Back alignment and structure |
|---|
Probab=98.12 E-value=1.5e-05 Score=95.54 Aligned_cols=58 Identities=22% Similarity=0.266 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccC
Q psy2951 776 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLN 835 (1466)
Q Consensus 776 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 835 (1466)
..+...+.+.+++.|++++.+++|+++... ++.+..+.+.+| ++.+|.||+|+|....
T Consensus 174 ~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~-~~~~~~v~~~~g-~~~a~~vV~a~G~~s~ 231 (405)
T 2gag_B 174 DHVAWAFARKANEMGVDIIQNCEVTGFIKD-GEKVTGVKTTRG-TIHAGKVALAGAGHSS 231 (405)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEES-SSBEEEEEETTC-CEEEEEEEECCGGGHH
T ss_pred HHHHHHHHHHHHHCCCEEEcCCeEEEEEEe-CCEEEEEEeCCc-eEECCEEEECCchhHH
Confidence 466777888889999999999999999843 455667777777 7999999999997643
|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=6.9e-06 Score=99.42 Aligned_cols=58 Identities=22% Similarity=0.251 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhCCcEEEcCc---eEEEEEecCCCCeEEEEcCCCcEEeccEEEEeecccc
Q psy2951 224 KEVGERITKLFESKGVKFVMKA---NVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVL 282 (1466)
Q Consensus 224 ~~~~~~l~~~l~~~GV~i~~~~---~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~~p 282 (1466)
..+...+.+.+++.|+++++++ +|+++..++ +.+..|.+.+|+++.+|.||+|+|.-.
T Consensus 161 ~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~-~~v~gV~t~~G~~i~Ad~VV~AtG~~s 221 (438)
T 3dje_A 161 RNALVAAAREAQRMGVKFVTGTPQGRVVTLIFEN-NDVKGAVTADGKIWRAERTFLCAGASA 221 (438)
T ss_dssp HHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEET-TEEEEEEETTTEEEECSEEEECCGGGG
T ss_pred HHHHHHHHHHHHhcCCEEEeCCcCceEEEEEecC-CeEEEEEECCCCEEECCEEEECCCCCh
Confidence 5677888888999999999999 999998653 466668888888999999999999653
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.12 E-value=8.9e-06 Score=100.94 Aligned_cols=58 Identities=19% Similarity=0.267 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCCeEEEEcC-CC--cEEeccEEEEeecccc
Q psy2951 224 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLD-NG--TTIPADLVIVGIGTVL 282 (1466)
Q Consensus 224 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~~-~g--~~i~~D~Vi~a~G~~p 282 (1466)
..+...+.+.+++.|++++.+++|+++..++ +....+.+. +| .++.+|.||.|+|...
T Consensus 128 ~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~-g~~~~V~~~~~G~~~~i~AdlVV~AdG~~S 188 (591)
T 3i3l_A 128 EEFDKLLLDEARSRGITVHEETPVTDVDLSD-PDRVVLTVRRGGESVTVESDFVIDAGGSGG 188 (591)
T ss_dssp HHHHHHHHHHHHHTTCEEETTCCEEEEECCS-TTCEEEEEEETTEEEEEEESEEEECCGGGC
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CCEEEEEEecCCceEEEEcCEEEECCCCcc
Confidence 4566677778888999999999999998653 345556665 56 5799999999999854
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.11 E-value=4.4e-06 Score=99.79 Aligned_cols=107 Identities=14% Similarity=0.137 Sum_probs=70.4
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCC--cc-------------chhc----------------
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV--KL-------------SKQL---------------- 643 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~--~~-------------~~~~---------------- 643 (1466)
.+||+|||||++|+++|+.|+++|.+ |+++|+.+....... .+ ...+
T Consensus 6 ~~dVvIVGaG~aGl~~A~~L~~~G~~--V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (399)
T 2x3n_A 6 HIDVLINGCGIGGAMLAYLLGRQGHR--VVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHD 83 (399)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCC--EEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEET
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCc--EEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeCC
Confidence 47999999999999999999999988 788887654310000 00 0000
Q ss_pred -----c--------------cCcccccccCHhHhhhC-CcEEEEceEEEEeccc-ccc--EEEccCCCEEecCEEEEcCC
Q psy2951 644 -----D--------------IKADSILLRTEEFYKDN-DIHVIKGKKIISDSEL-NEK--KIKLQDGTSIDFTKIYLATG 700 (1466)
Q Consensus 644 -----~--------------~~~~~~~~~~~~~~~~~-gv~~~~~~~v~~i~~~-~~~--~v~~~~~~~~~~d~lviAtG 700 (1466)
. .....+...+.+.+.+. |++++.+++|+.+... +.. .+++.+|+++++|.||.|+|
T Consensus 84 g~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~AdG 163 (399)
T 2x3n_A 84 GELLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGADG 163 (399)
T ss_dssp TEEEEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECCC
T ss_pred CCEEEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEECCC
Confidence 0 00011112223344555 8999999999988322 233 67777888999999999999
Q ss_pred CCC
Q psy2951 701 SSP 703 (1466)
Q Consensus 701 ~~~ 703 (1466)
...
T Consensus 164 ~~s 166 (399)
T 2x3n_A 164 IAS 166 (399)
T ss_dssp TTC
T ss_pred CCh
Confidence 654
|
| >2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A | Back alignment and structure |
|---|
Probab=98.08 E-value=2.2e-05 Score=97.42 Aligned_cols=59 Identities=19% Similarity=0.287 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhc-CcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccC
Q psy2951 776 KEVGERITKLFESK-GVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLN 835 (1466)
Q Consensus 776 ~~~~~~~~~~l~~~-gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 835 (1466)
..+...+.+.+++. ||+++.+ +|+++...+++.+..+.+.+|+++.+|.||.|+|....
T Consensus 194 ~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S~ 253 (550)
T 2e4g_A 194 HLVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGL 253 (550)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGCC
T ss_pred HHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCchh
Confidence 45677888888888 9999999 99999855556667788888988999999999998654
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=98.07 E-value=8.1e-06 Score=100.83 Aligned_cols=57 Identities=26% Similarity=0.398 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccc
Q psy2951 776 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTV 833 (1466)
Q Consensus 776 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 833 (1466)
..+.+.+.+.+++.|++|+++++|++|.. +++++..|++.+|+++.+|.||.+++..
T Consensus 221 ~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~-~~~~~~gV~~~~g~~~~ad~VV~~a~~~ 277 (501)
T 4dgk_A 221 GALVQGMIKLFQDLGGEVVLNARVSHMET-TGNKIEAVHLEDGRRFLTQAVASNADVV 277 (501)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTSCEEECSCEEECCC--
T ss_pred cchHHHHHHHHHHhCCceeeecceeEEEe-eCCeEEEEEecCCcEEEcCEEEECCCHH
Confidence 45677888899999999999999999984 4677888999999999999999987653
|
| >3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... | Back alignment and structure |
|---|
Probab=98.06 E-value=4e-07 Score=113.97 Aligned_cols=59 Identities=19% Similarity=0.330 Sum_probs=45.1
Q ss_pred HhcCcEEEccceEEEEEecCC-CceEEEECC---CCc--EEecCEEEEccccccCccccccCCce
Q psy2951 787 ESKGVKFVMKANVSSFEKNEK-NDVTAANLD---NGT--TIPADLVIVGIGTVLNTNYLDGKGVE 845 (1466)
Q Consensus 787 ~~~gv~~~~~~~v~~i~~~~~-~~~~~v~~~---~g~--~i~~D~vi~a~G~~p~~~~~~~~gl~ 845 (1466)
++.||++++++.+++|..+++ +++..|.+. +|+ ++.+|.||+|+|..+++.++...|+.
T Consensus 271 ~~~nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~~~g~~~~i~A~~VIlaaG~~~s~~lL~~sgiG 335 (623)
T 3pl8_A 271 PEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFG 335 (623)
T ss_dssp EEEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEECEEEEEECSCTTHHHHHHHTTTSS
T ss_pred cCCCEEEEeCCEEEEEEEECCCCEEEEEEEEEcCCCcEEEEECCEEEEcCCCcCCHHHHHhcCCC
Confidence 345899999999999985432 356666654 354 68899999999999999887776653
|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=4e-06 Score=99.58 Aligned_cols=57 Identities=7% Similarity=0.088 Sum_probs=47.2
Q ss_pred cHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeecccc
Q psy2951 1246 GKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVL 1305 (1466)
Q Consensus 1246 ~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p 1305 (1466)
+..+...|.+.++++|++++.+++|+++.. +++. ..|++.+| ++.||.||+|+|...
T Consensus 153 ~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~-~~~~-~~V~t~~g-~i~a~~VV~A~G~~s 209 (381)
T 3nyc_A 153 TDALHQGYLRGIRRNQGQVLCNHEALEIRR-VDGA-WEVRCDAG-SYRAAVLVNAAGAWC 209 (381)
T ss_dssp HHHHHHHHHHHHHHTTCEEESSCCCCEEEE-ETTE-EEEECSSE-EEEESEEEECCGGGH
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEE-eCCe-EEEEeCCC-EEEcCEEEECCChhH
Confidence 356778888999999999999999999983 3333 66888887 899999999999743
|
| >2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* | Back alignment and structure |
|---|
Probab=98.01 E-value=3.5e-05 Score=92.17 Aligned_cols=57 Identities=21% Similarity=0.254 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeecccc
Q psy2951 1247 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVL 1305 (1466)
Q Consensus 1247 ~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p 1305 (1466)
..+...|.+.+++.|++++.+++|+++. .+++++..|.+.+| ++.+|.||+|+|...
T Consensus 174 ~~~~~~l~~~~~~~g~~i~~~~~v~~i~-~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s 230 (405)
T 2gag_B 174 DHVAWAFARKANEMGVDIIQNCEVTGFI-KDGEKVTGVKTTRG-TIHAGKVALAGAGHS 230 (405)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEE-ESSSBEEEEEETTC-CEEEEEEEECCGGGH
T ss_pred HHHHHHHHHHHHHCCCEEEcCCeEEEEE-EeCCEEEEEEeCCc-eEECCEEEECCchhH
Confidence 4677888889999999999999999998 45566777888888 799999999999765
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.01 E-value=9.7e-06 Score=96.75 Aligned_cols=106 Identities=14% Similarity=0.174 Sum_probs=70.7
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCC---------------Cchhhc-------------cC
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK---------------LSKQLD-------------IK 1117 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~---------------l~~~~~-------------~~ 1117 (1466)
+.+|+|||||++|+++|..|++.|. +|+|||+.+........ +...+. ..
T Consensus 6 ~~dVvIVGaG~aGl~~A~~L~~~G~--~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (399)
T 2x3n_A 6 HIDVLINGCGIGGAMLAYLLGRQGH--RVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHD 83 (399)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTC--CEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEET
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCC--cEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeCC
Confidence 3689999999999999999999998 99999998653110000 000000 00
Q ss_pred c---cccc------------cc-------ChhhhccC-CcEEEcCCeEEEeecCCCC----eEEecCCcEEecCeEEEec
Q psy2951 1118 A---DSIL------------LR-------TEEFYKDN-DIHVIKGKKIISDSELNEK----KIKLQDGTSIDFTKIYLAT 1170 (1466)
Q Consensus 1118 ~---~~~~------------~~-------~~~~~~~~-~v~~~~~~~v~~i~d~~~~----~v~~~~g~~~~yd~lvlAt 1170 (1466)
. ..+. +. ..+.+.+. +++++.+++|+++ +.... .|++.+|+++.+|.||.|+
T Consensus 84 g~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i-~~~~~~v~g~v~~~~g~~~~ad~vV~Ad 162 (399)
T 2x3n_A 84 GELLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAV-QRDERHAIDQVRLNDGRVLRPRVVVGAD 162 (399)
T ss_dssp TEEEEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEE-EECTTSCEEEEEETTSCEEEEEEEEECC
T ss_pred CCEEEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEE-EEcCCceEEEEEECCCCEEECCEEEECC
Confidence 0 0000 00 01233344 8999999999999 65433 6778888899999999999
Q ss_pred CCCC
Q psy2951 1171 GSSP 1174 (1466)
Q Consensus 1171 G~~~ 1174 (1466)
|...
T Consensus 163 G~~s 166 (399)
T 2x3n_A 163 GIAS 166 (399)
T ss_dssp CTTC
T ss_pred CCCh
Confidence 9744
|
| >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=3.1e-05 Score=92.07 Aligned_cols=80 Identities=19% Similarity=0.254 Sum_probs=56.5
Q ss_pred CCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCc
Q psy2951 757 VKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNT 836 (1466)
Q Consensus 757 g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 836 (1466)
+....++.+....+. +..+...+.+.+++.|++++.+++|++++..++ .+ .+.++++ ++.+|.||+|+|...+
T Consensus 134 ~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~-~~-~v~~~~g-~~~a~~vV~A~G~~~~- 206 (389)
T 2gf3_A 134 ENYNAIFEPNSGVLF---SENCIRAYRELAEARGAKVLTHTRVEDFDISPD-SV-KIETANG-SYTADKLIVSMGAWNS- 206 (389)
T ss_dssp TTEEEEEETTCEEEE---HHHHHHHHHHHHHHTTCEEECSCCEEEEEECSS-CE-EEEETTE-EEEEEEEEECCGGGHH-
T ss_pred CCceEEEeCCCcEEe---HHHHHHHHHHHHHHCCCEEEcCcEEEEEEecCC-eE-EEEeCCC-EEEeCEEEEecCccHH-
Confidence 345666666543332 356777888889999999999999999985433 33 4666655 7999999999998654
Q ss_pred cccccCC
Q psy2951 837 NYLDGKG 843 (1466)
Q Consensus 837 ~~~~~~g 843 (1466)
.++...+
T Consensus 207 ~l~~~~g 213 (389)
T 2gf3_A 207 KLLSKLN 213 (389)
T ss_dssp HHGGGGT
T ss_pred HHhhhhc
Confidence 3444443
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=5.9e-06 Score=98.08 Aligned_cols=38 Identities=16% Similarity=0.221 Sum_probs=32.5
Q ss_pred CCCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC
Q psy2951 591 SSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 630 (1466)
Q Consensus 591 ~~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~ 630 (1466)
+.+..+||+|||||++|+++|+.|+++|.+ |+++|+..
T Consensus 13 ~~~~~~dvvIIGgG~~Gl~~A~~La~~G~~--V~llE~~~ 50 (382)
T 1ryi_A 13 AMKRHYEAVVIGGGIIGSAIAYYLAKENKN--TALFESGT 50 (382)
T ss_dssp -CCSEEEEEEECCSHHHHHHHHHHHHTTCC--EEEECSSS
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHHhCCCc--EEEEeCCC
Confidence 334568999999999999999999999987 88888864
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=3.3e-05 Score=98.59 Aligned_cols=68 Identities=10% Similarity=0.250 Sum_probs=52.9
Q ss_pred cHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccCccccccCCce
Q psy2951 1246 GKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVE 1316 (1466)
Q Consensus 1246 ~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~ 1316 (1466)
+..+...|.+.+++.|++++++++|+++. .+++. ..|.+.+|.++.+|.||+|+|.... .++...+++
T Consensus 416 p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~-~~~~~-v~V~t~~G~~i~Ad~VVlAtG~~s~-~l~~~~~lp 483 (676)
T 3ps9_A 416 PAELTRNVLELAQQQGLQIYYQYQLQNFS-RKDDC-WLLNFAGDQQATHSVVVLANGHQIS-RFSQTSTLP 483 (676)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESCCEEEEE-EETTE-EEEEETTSCEEEESEEEECCGGGGG-CSTTTTTCS
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCeeeEEE-EeCCe-EEEEECCCCEEECCEEEECCCcchh-ccccccCCc
Confidence 36778888889999999999999999998 34444 4688888889999999999998643 344444443
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.98 E-value=5.2e-05 Score=89.83 Aligned_cols=58 Identities=17% Similarity=0.230 Sum_probs=48.8
Q ss_pred cHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeecccc
Q psy2951 1246 GKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVL 1305 (1466)
Q Consensus 1246 ~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p 1305 (1466)
+..+...|.+.+++.|++++.+++|++++ .+++.+..|.+.+| ++.||.||+|+|...
T Consensus 148 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~i~-~~~~~v~gv~~~~g-~i~a~~VV~A~G~~s 205 (382)
T 1y56_B 148 PFEATTAFAVKAKEYGAKLLEYTEVKGFL-IENNEIKGVKTNKG-IIKTGIVVNATNAWA 205 (382)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEE-ESSSBEEEEEETTE-EEECSEEEECCGGGH
T ss_pred HHHHHHHHHHHHHHCCCEEECCceEEEEE-EECCEEEEEEECCc-EEECCEEEECcchhH
Confidence 45677888888999999999999999998 45556666888887 899999999999765
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=8.3e-06 Score=97.59 Aligned_cols=109 Identities=17% Similarity=0.206 Sum_probs=66.2
Q ss_pred CCCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCC---------------ccchhc------------
Q psy2951 591 SSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV---------------KLSKQL------------ 643 (1466)
Q Consensus 591 ~~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~---------------~~~~~~------------ 643 (1466)
+...++||+|||||++|+++|+.|+++|++ |+++|+.+....... .+...+
T Consensus 19 ~~~~~~dV~IVGaG~aGl~~A~~La~~G~~--V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~ 96 (407)
T 3rp8_A 19 YFQGHMKAIVIGAGIGGLSAAVALKQSGID--CDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAY 96 (407)
T ss_dssp ----CCEEEEECCSHHHHHHHHHHHHTTCE--EEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEE
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHhCCCC--EEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEE
Confidence 344568999999999999999999999987 777777643210000 000000
Q ss_pred -ccC-c------------------------ccccccCHhHhhhCCcEEEEceEEEEeccc-cccEEEccCCCEEecCEEE
Q psy2951 644 -DIK-A------------------------DSILLRTEEFYKDNDIHVIKGKKIISDSEL-NEKKIKLQDGTSIDFTKIY 696 (1466)
Q Consensus 644 -~~~-~------------------------~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~-~~~~v~~~~~~~~~~d~lv 696 (1466)
... . ..+...+.+.+.+ ++++++++|+.+... +...+++.+|+++.+|.||
T Consensus 97 ~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV 174 (407)
T 3rp8_A 97 RDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR--DSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLI 174 (407)
T ss_dssp EETTTCCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCG--GGEEESCCEEEEEEETTEEEEEETTSCEEEESEEE
T ss_pred EECCCCCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCc--CEEEECCEEEEEEecCCcEEEEEcCCCEEeeCEEE
Confidence 000 0 0011111122222 789999999888322 2345677788899999999
Q ss_pred EcCCCCC
Q psy2951 697 LATGSSP 703 (1466)
Q Consensus 697 iAtG~~~ 703 (1466)
.|.|...
T Consensus 175 ~AdG~~S 181 (407)
T 3rp8_A 175 AADGSHS 181 (407)
T ss_dssp ECCCTTC
T ss_pred ECCCcCh
Confidence 9999643
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.97 E-value=4.2e-05 Score=90.58 Aligned_cols=58 Identities=17% Similarity=0.249 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccC
Q psy2951 776 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLN 835 (1466)
Q Consensus 776 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 835 (1466)
..+...+.+.+++.|++++.++++++++.. ++.+..+.+.+| ++.+|.||+|+|....
T Consensus 149 ~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~-~~~v~gv~~~~g-~i~a~~VV~A~G~~s~ 206 (382)
T 1y56_B 149 FEATTAFAVKAKEYGAKLLEYTEVKGFLIE-NNEIKGVKTNKG-IIKTGIVVNATNAWAN 206 (382)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEES-SSBEEEEEETTE-EEECSEEEECCGGGHH
T ss_pred HHHHHHHHHHHHHCCCEEECCceEEEEEEE-CCEEEEEEECCc-EEECCEEEECcchhHH
Confidence 556677888889999999999999999853 445655777777 8999999999997643
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=97.97 E-value=1.2e-05 Score=99.82 Aligned_cols=107 Identities=17% Similarity=0.266 Sum_probs=69.9
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCC--------------ccchhc-----------------
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV--------------KLSKQL----------------- 643 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~--------------~~~~~~----------------- 643 (1466)
.+||+|||||+||+++|+.|+++|.+ |+++|+.+....... .+...+
T Consensus 23 ~~DVvIVGgG~AGl~aA~~Lar~G~~--V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 100 (591)
T 3i3l_A 23 RSKVAIIGGGPAGSVAGLTLHKLGHD--VTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSATFLWGQ 100 (591)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCE--EEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEEECSS
T ss_pred CCCEEEECcCHHHHHHHHHHHcCCCC--EEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEEEecC
Confidence 58999999999999999999999987 888888743221110 000000
Q ss_pred -----------------------ccCcccccccCHhHhhhCCcEEEEceEEEEecc--ccccEEEcc-CC--CEEecCEE
Q psy2951 644 -----------------------DIKADSILLRTEEFYKDNDIHVIKGKKIISDSE--LNEKKIKLQ-DG--TSIDFTKI 695 (1466)
Q Consensus 644 -----------------------~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~--~~~~~v~~~-~~--~~~~~d~l 695 (1466)
..+...+...+.+.+.+.|++++.+++|+.+.. .....|.+. +| .++.+|.|
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~~G~~~~i~AdlV 180 (591)
T 3i3l_A 101 DQAPWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRGGESVTVESDFV 180 (591)
T ss_dssp SCCCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEEETTEEEEEEESEE
T ss_pred CCccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEecCCceEEEEcCEE
Confidence 000111112223445568999999988988832 223456665 55 57999999
Q ss_pred EEcCCCCC
Q psy2951 696 YLATGSSP 703 (1466)
Q Consensus 696 viAtG~~~ 703 (1466)
|.|+|...
T Consensus 181 V~AdG~~S 188 (591)
T 3i3l_A 181 IDAGGSGG 188 (591)
T ss_dssp EECCGGGC
T ss_pred EECCCCcc
Confidence 99999654
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=1.3e-05 Score=102.51 Aligned_cols=46 Identities=9% Similarity=0.127 Sum_probs=34.9
Q ss_pred HhhhCCcEEEEceEEEEeccc-cccEEEccCCCEEecCEEEEcCCCC
Q psy2951 657 FYKDNDIHVIKGKKIISDSEL-NEKKIKLQDGTSIDFTKIYLATGSS 702 (1466)
Q Consensus 657 ~~~~~gv~~~~~~~v~~i~~~-~~~~v~~~~~~~~~~d~lviAtG~~ 702 (1466)
.+++.|++++++++|+.+... ....|.+.++.++.+|+||+|+|..
T Consensus 426 ~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~i~Ad~VVlAtG~~ 472 (676)
T 3ps9_A 426 LAQQQGLQIYYQYQLQNFSRKDDCWLLNFAGDQQATHSVVVLANGHQ 472 (676)
T ss_dssp HHHHTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCGGG
T ss_pred HHHhCCCEEEeCCeeeEEEEeCCeEEEEECCCCEEECCEEEECCCcc
Confidence 345679999999999988322 2345666677889999999999964
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.96 E-value=1.8e-05 Score=93.92 Aligned_cols=98 Identities=19% Similarity=0.299 Sum_probs=78.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCccc----------------------------------------
Q psy2951 1205 ESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQES---------------------------------------- 1244 (1466)
Q Consensus 1205 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~---------------------------------------- 1244 (1466)
..+|+|||+|..|+.+|..|+++|.+|+++++.+.+....
T Consensus 27 ~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 106 (417)
T 3v76_A 27 KQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRPQDF 106 (417)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCHHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCHHHH
Confidence 4589999999999999999999999999999876431100
Q ss_pred -----------------------ccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEee
Q psy2951 1245 -----------------------LGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 1301 (1466)
Q Consensus 1245 -----------------------~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~ 1301 (1466)
-...+.+.|.+.+++.||+++++++|+++. .+++ ...|.+.+| ++.||.||+|+
T Consensus 107 ~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~-~~~~-~~~V~~~~g-~i~ad~VIlAt 183 (417)
T 3v76_A 107 VALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVE-RTAS-GFRVTTSAG-TVDAASLVVAS 183 (417)
T ss_dssp HHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEE-EETT-EEEEEETTE-EEEESEEEECC
T ss_pred HHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEE-EeCC-EEEEEECCc-EEEeeEEEECC
Confidence 012566678888888999999999999997 3333 356888888 89999999999
Q ss_pred cccc
Q psy2951 1302 GTVL 1305 (1466)
Q Consensus 1302 G~~p 1305 (1466)
|..+
T Consensus 184 G~~S 187 (417)
T 3v76_A 184 GGKS 187 (417)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 9876
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=1.4e-05 Score=99.76 Aligned_cols=39 Identities=21% Similarity=0.365 Sum_probs=33.6
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCC
Q psy2951 593 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP 633 (1466)
Q Consensus 593 ~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~ 633 (1466)
...+||||||||+|||+||+.|+++|.+ |+++|+.+...
T Consensus 124 ~~~~DVvVVGaG~aGl~aA~~la~~G~~--V~vlEk~~~~g 162 (571)
T 1y0p_A 124 HDTVDVVVVGSGGAGFSAAISATDSGAK--VILIEKEPVIG 162 (571)
T ss_dssp SEECSEEEECCSHHHHHHHHHHHHTTCC--EEEECSSSSSC
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCc--EEEEeCCCCCC
Confidence 3468999999999999999999999988 88888876543
|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=2.4e-05 Score=94.57 Aligned_cols=59 Identities=24% Similarity=0.264 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhcCcEEEccc---eEEEEEecCCCceEEEECCCCcEEecCEEEEccccccC
Q psy2951 776 KEVGERITKLFESKGVKFVMKA---NVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLN 835 (1466)
Q Consensus 776 ~~~~~~~~~~l~~~gv~~~~~~---~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 835 (1466)
..+...+.+.+++.|+++++++ +|+++.. +++++..|.+.+|+++.+|.||+|+|....
T Consensus 161 ~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~-~~~~v~gV~t~~G~~i~Ad~VV~AtG~~s~ 222 (438)
T 3dje_A 161 RNALVAAAREAQRMGVKFVTGTPQGRVVTLIF-ENNDVKGAVTADGKIWRAERTFLCAGASAG 222 (438)
T ss_dssp HHHHHHHHHHHHHTTCEEEESTTTTCEEEEEE-ETTEEEEEEETTTEEEECSEEEECCGGGGG
T ss_pred HHHHHHHHHHHHhcCCEEEeCCcCceEEEEEe-cCCeEEEEEECCCCEEECCEEEECCCCChh
Confidence 4667788888899999999999 9999984 345676688999989999999999997543
|
| >1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... | Back alignment and structure |
|---|
Probab=97.95 E-value=6e-06 Score=102.27 Aligned_cols=39 Identities=26% Similarity=0.432 Sum_probs=34.5
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD 635 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~ 635 (1466)
.+||+|||||+|||+||+.|+++|++ |+++|+++.+++.
T Consensus 4 ~~~vvIIGaG~aGL~aA~~L~~~G~~--V~vlE~~~~~GGr 42 (520)
T 1s3e_A 4 KCDVVVVGGGISGMAAAKLLHDSGLN--VVVLEARDRVGGR 42 (520)
T ss_dssp BCSEEEECCBHHHHHHHHHHHHTTCC--EEEECSSSSSBTT
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCC--EEEEeCCCCCCCc
Confidence 57999999999999999999999987 8899998776543
|
| >3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} | Back alignment and structure |
|---|
Probab=97.95 E-value=1.1e-05 Score=99.94 Aligned_cols=108 Identities=15% Similarity=0.171 Sum_probs=67.6
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCC------------------------------Cc-cch-
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR------------------------------VK-LSK- 641 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~------------------------------~~-~~~- 641 (1466)
..+||+||||||+|+++|+.|+++|.+ |+++|+.+...... .. +..
T Consensus 48 ~~~DVvIVGaG~aGL~~A~~La~~G~~--V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~ 125 (570)
T 3fmw_A 48 LTTDVVVVGGGPVGLMLAGELRAGGVG--ALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGI 125 (570)
T ss_dssp ---CEEEECCSHHHHHHHHHHHHTTCC--EEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTB
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCC--EEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCc
Confidence 357999999999999999999999988 77788764322000 00 000
Q ss_pred ---hcc-------------cCcccccccCHhHhhhCCcEEEEceEEEEeccc-cccEEEc--cCC-CEEecCEEEEcCCC
Q psy2951 642 ---QLD-------------IKADSILLRTEEFYKDNDIHVIKGKKIISDSEL-NEKKIKL--QDG-TSIDFTKIYLATGS 701 (1466)
Q Consensus 642 ---~~~-------------~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~-~~~~v~~--~~~-~~~~~d~lviAtG~ 701 (1466)
.+. .....+...+.+.+.+.|++++++++|+.+... +..++++ .+| .++++|+||.|.|.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~ADG~ 205 (570)
T 3fmw_A 126 FTQGLDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDGG 205 (570)
T ss_dssp CTTCCBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEECSCS
T ss_pred ccccccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcCCC
Confidence 000 000111112233445569999999999988322 2334555 567 68999999999996
Q ss_pred CC
Q psy2951 702 SP 703 (1466)
Q Consensus 702 ~~ 703 (1466)
..
T Consensus 206 ~S 207 (570)
T 3fmw_A 206 RS 207 (570)
T ss_dssp SC
T ss_pred Cc
Confidence 54
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=97.93 E-value=9.9e-06 Score=96.70 Aligned_cols=36 Identities=28% Similarity=0.503 Sum_probs=31.8
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFL 632 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~ 632 (1466)
.+||+||||||||+++|+.|+++|++ |+++|+.+.+
T Consensus 4 ~yDViIVGaGpaGl~~A~~La~~G~~--V~v~Er~~~~ 39 (397)
T 3oz2_A 4 TYDVLVVGGGPGGSTAARYAAKYGLK--TLMIEKRPEI 39 (397)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCC--EEEECSSSST
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCc--EEEEeCCCCC
Confidence 48999999999999999999999998 7888876543
|
| >3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} | Back alignment and structure |
|---|
Probab=97.93 E-value=7.9e-06 Score=101.26 Aligned_cols=110 Identities=15% Similarity=0.205 Sum_probs=66.4
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCC----------------------------------CCCC--
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP----------------------------------YDRV-- 85 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~----------------------------------~~~~-- 85 (1466)
.++||+||||||+|+++|..|++.|.+|.|+|........ +...
T Consensus 48 ~~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 127 (570)
T 3fmw_A 48 LTTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGIFT 127 (570)
T ss_dssp ---CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTBCT
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCccc
Confidence 4589999999999999999999999998887644322100 0000
Q ss_pred -ccch-hcc--------cCcccccccChhhhhcCCeEEEeCceEEEecc-ccccEEEe--cCC-cEEecCEEEEccCCCC
Q psy2951 86 -KLSK-QLD--------IKADSILLRTEEFYKDNDIHVIKGKKIISDSE-LNEKKIKL--QDG-TSIDFTKIYLATGSSP 151 (1466)
Q Consensus 86 -~~~~-~~~--------~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~-~~~~~v~~--~~~-~~~~~d~lviAtG~~~ 151 (1466)
.+.. ... .....+...+.+.+++.+++++.++.+..... .+..++++ .++ .++.+|+||.|.|.+.
T Consensus 128 ~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~ADG~~S 207 (570)
T 3fmw_A 128 QGLDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDGGRS 207 (570)
T ss_dssp TCCBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEECSCSSC
T ss_pred ccccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcCCCCc
Confidence 0000 000 00011111223344456899999988775332 23445666 566 6899999999999764
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=2.1e-05 Score=100.48 Aligned_cols=56 Identities=9% Similarity=0.193 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCCeEEEEcCCCc-EEeccEEEEeeccc
Q psy2951 224 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGT-TIPADLVIVGIGTV 281 (1466)
Q Consensus 224 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~~~g~-~i~~D~Vi~a~G~~ 281 (1466)
..+...+.+.+++.|++++++++|+++..+++ .+ .+.+.+|. ++.+|.||+|+|..
T Consensus 412 ~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~-~v-~V~t~~G~~~i~Ad~VVlAtG~~ 468 (689)
T 3pvc_A 412 SDLTHALMMLAQQNGMTCHYQHELQRLKRIDS-QW-QLTFGQSQAAKHHATVILATGHR 468 (689)
T ss_dssp HHHHHHHHHHHHHTTCEEEESCCEEEEEECSS-SE-EEEEC-CCCCEEESEEEECCGGG
T ss_pred HHHHHHHHHHHHhCCCEEEeCCeEeEEEEeCC-eE-EEEeCCCcEEEECCEEEECCCcc
Confidence 67788888889999999999999999987653 33 57777777 89999999999976
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} | Back alignment and structure |
|---|
Probab=97.92 E-value=1.8e-05 Score=97.45 Aligned_cols=108 Identities=18% Similarity=0.260 Sum_probs=69.0
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCc---------------cchhcc---------------
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK---------------LSKQLD--------------- 644 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~---------------~~~~~~--------------- 644 (1466)
.+||+|||||+||+++|+.|+++|++ |+++|+.......... +...+.
T Consensus 7 ~~dVvIVGgG~aGl~aA~~La~~G~~--V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~ 84 (512)
T 3e1t_A 7 VFDLIVIGGGPGGSTLASFVAMRGHR--VLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTFRWG 84 (512)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCC--EEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEEECS
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCC--EEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceEEec
Confidence 47999999999999999999999987 8888887522211000 000000
Q ss_pred -----------------------cCcccccccCHhHhhhCCcEEEEceEEEEecccccc-----EEEccCCC--EEecCE
Q psy2951 645 -----------------------IKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEK-----KIKLQDGT--SIDFTK 694 (1466)
Q Consensus 645 -----------------------~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~-----~v~~~~~~--~~~~d~ 694 (1466)
.+...+...+.+.+.+.|++++.+++|+.+ ..+.. .+...+|. ++.+|.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v-~~~~~~v~gv~~~~~dG~~~~i~ad~ 163 (512)
T 3e1t_A 85 KEPEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDV-LFEGERAVGVRYRNTEGVELMAHARF 163 (512)
T ss_dssp SCSSCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEE-EEETTEEEEEEEECSSSCEEEEEEEE
T ss_pred CCccccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEE-EEECCEEEEEEEEeCCCCEEEEEcCE
Confidence 000011111233455679999999999988 33332 23334564 799999
Q ss_pred EEEcCCCCCCc
Q psy2951 695 IYLATGSSPRT 705 (1466)
Q Consensus 695 lviAtG~~~~~ 705 (1466)
||.|+|.....
T Consensus 164 VI~AdG~~S~v 174 (512)
T 3e1t_A 164 IVDASGNRTRV 174 (512)
T ss_dssp EEECCCTTCSS
T ss_pred EEECCCcchHH
Confidence 99999975443
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.92 E-value=1.4e-05 Score=92.98 Aligned_cols=104 Identities=14% Similarity=0.231 Sum_probs=66.5
Q ss_pred CeEEEEcCchHHHHHHHHHHH---cCCCccEEEEcCCCCCCCCCCccc-------------hhcccCcc-----------
Q psy2951 596 DTFIVVGGGPSGATCVETLRQ---NGFTGKLYFITDENFLPYDRVKLS-------------KQLDIKAD----------- 648 (1466)
Q Consensus 596 ~~vvVIGgG~AGl~aA~~l~~---~g~~~~v~~~~~~~~~~~~~~~~~-------------~~~~~~~~----------- 648 (1466)
+||+|||||++|+++|+.|++ .|++ |+++|+....++...... ..+.....
T Consensus 2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~--V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~ 79 (342)
T 3qj4_A 2 AQVLIVGAGMTGSLCAALLRRQTSGPLY--LAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYDE 79 (342)
T ss_dssp EEEEEECCSHHHHHHHHHHHSCC-CCEE--EEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHHH
T ss_pred CcEEEECCcHHHHHHHHHHHhhccCCce--EEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHHH
Confidence 689999999999999999999 8876 888888754332111000 00000000
Q ss_pred ----cc-------------------------cccC-HhHhhhCCcEEEEceEEEEeccc-cccEEEccCCCEEecCEEEE
Q psy2951 649 ----SI-------------------------LLRT-EEFYKDNDIHVIKGKKIISDSEL-NEKKIKLQDGTSIDFTKIYL 697 (1466)
Q Consensus 649 ----~~-------------------------~~~~-~~~~~~~gv~~~~~~~v~~i~~~-~~~~v~~~~~~~~~~d~lvi 697 (1466)
.+ ...+ ....+..|++++++++|+.+... +...|++.+|..+.+|+||+
T Consensus 80 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vV~ 159 (342)
T 3qj4_A 80 LLAYGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKESGAEVYFRHRVTQINLRDDKWEVSKQTGSPEQFDLIVL 159 (342)
T ss_dssp HHHTTSCEECCSCEETCCC--CCEEEECTTCTTHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEESSSCCEEESEEEE
T ss_pred HHhCCCeecCchhhcceeccCCccceecCCCHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEE
Confidence 00 0000 11222338999999999998322 34567777787789999999
Q ss_pred cCCC
Q psy2951 698 ATGS 701 (1466)
Q Consensus 698 AtG~ 701 (1466)
|+..
T Consensus 160 A~p~ 163 (342)
T 3qj4_A 160 TMPV 163 (342)
T ss_dssp CSCH
T ss_pred CCCH
Confidence 9983
|
| >3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=4.8e-06 Score=101.16 Aligned_cols=59 Identities=22% Similarity=0.315 Sum_probs=48.4
Q ss_pred cHHHHHHHHHHHHhCCcEEEcCceEEEEEec--------------CCCcEEEEEcCCCCee--ecCEEEEeecccc
Q psy2951 1246 GKEVGERITKLFESKGVKFVMKANVSSFEKN--------------EKNDVTAANLDNGTTI--PADLVIVGIGTVL 1305 (1466)
Q Consensus 1246 ~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~--------------~~g~~~~v~l~~g~~i--~~D~vv~a~G~~p 1305 (1466)
+..+...|.+.++++|++++.+++|+++... +++++..|.+.+| ++ .||.||+|+|...
T Consensus 180 ~~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG~~s 254 (448)
T 3axb_A 180 AEKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAGVWS 254 (448)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCGGGH
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCCcCH
Confidence 3578888999999999999999999999831 3445667888888 68 9999999999753
|
| >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} | Back alignment and structure |
|---|
Probab=97.91 E-value=1.7e-05 Score=98.57 Aligned_cols=109 Identities=14% Similarity=0.130 Sum_probs=70.3
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCC-------------------------------CC-----
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD-------------------------------RV----- 637 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~-------------------------------~~----- 637 (1466)
..++|+||||||+|+++|+.|+++|.+ |+++|+.+..... ..
T Consensus 4 ~~~dVlIVGaG~aGl~~A~~La~~G~~--v~viEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 81 (535)
T 3ihg_A 4 HEVDVLVVGAGLGGLSTAMFLARQGVR--VLVVERRPGLSPYPRAAGQNPRTMELLRIGGVADEVVRADDIRGTQGDFVI 81 (535)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHTTTCC--EEEECSSSSCCCCCCSCCBCHHHHHHHHHTTCHHHHHHSCCSSCTTSCCEE
T ss_pred ccCcEEEECcCHHHHHHHHHHHHCCCC--EEEEeCCCCCCCCCccceECHHHHHHHHHcCCHHHHHhhCCCcccccceee
Confidence 458999999999999999999999987 7888876432100 00
Q ss_pred -cc----chhc--------------c---------cCcccccccCHhHhhhCCcEEEEceEEEEecccc-----ccEEEc
Q psy2951 638 -KL----SKQL--------------D---------IKADSILLRTEEFYKDNDIHVIKGKKIISDSELN-----EKKIKL 684 (1466)
Q Consensus 638 -~~----~~~~--------------~---------~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~-----~~~v~~ 684 (1466)
.. ...+ . .+...+...+.+.+.+.|++++++++|+.+.... ..++++
T Consensus 82 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~~ 161 (535)
T 3ihg_A 82 RLAESVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTARL 161 (535)
T ss_dssp EEESSSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSEEEEEE
T ss_pred eEEeccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCccccEEEEE
Confidence 00 0000 0 0011111222344556799999999999883222 234555
Q ss_pred cCC---CEEecCEEEEcCCCCCC
Q psy2951 685 QDG---TSIDFTKIYLATGSSPR 704 (1466)
Q Consensus 685 ~~~---~~~~~d~lviAtG~~~~ 704 (1466)
.++ .++.+|+||.|+|....
T Consensus 162 ~~~~~~~~i~a~~vV~AdG~~S~ 184 (535)
T 3ihg_A 162 AGPDGEYDLRAGYLVGADGNRSL 184 (535)
T ss_dssp EETTEEEEEEEEEEEECCCTTCH
T ss_pred EcCCCeEEEEeCEEEECCCCcch
Confidence 555 68999999999997543
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=0.0001 Score=94.03 Aligned_cols=66 Identities=9% Similarity=0.190 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCc-EEecCEEEEccccccCccccccCCc
Q psy2951 776 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGT-TIPADLVIVGIGTVLNTNYLDGKGV 844 (1466)
Q Consensus 776 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~-~i~~D~vi~a~G~~p~~~~~~~~gl 844 (1466)
..+...+.+.+++.|++++++++|+++...++ . ..|.+.+|. ++.+|.||+|+|.... .++...++
T Consensus 412 ~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~-~-v~V~t~~G~~~i~Ad~VVlAtG~~s~-~l~~~~~l 478 (689)
T 3pvc_A 412 SDLTHALMMLAQQNGMTCHYQHELQRLKRIDS-Q-WQLTFGQSQAAKHHATVILATGHRLP-EWEQTHHL 478 (689)
T ss_dssp HHHHHHHHHHHHHTTCEEEESCCEEEEEECSS-S-EEEEEC-CCCCEEESEEEECCGGGTT-CSTTTTTS
T ss_pred HHHHHHHHHHHHhCCCEEEeCCeEeEEEEeCC-e-EEEEeCCCcEEEECCEEEECCCcchh-ccccccCC
Confidence 56777888888999999999999999985433 3 367788877 8999999999998643 44444333
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=97.90 E-value=2.6e-05 Score=92.84 Aligned_cols=108 Identities=17% Similarity=0.161 Sum_probs=68.9
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCC-CC--ccch-------hcc-----------------c-
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD-RV--KLSK-------QLD-----------------I- 645 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~-~~--~~~~-------~~~-----------------~- 645 (1466)
..++|+|||||++|+++|..|++.|++ |+++|+.+..... .. .+.. .++ .
T Consensus 4 ~~~~V~IVGaG~aGl~~A~~L~~~G~~--v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 81 (397)
T 2vou_A 4 TTDRIAVVGGSISGLTAALMLRDAGVD--VDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDAL 81 (397)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCE--EEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETT
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCC--EEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccccceEEEecC
Confidence 358999999999999999999999987 7888876542110 00 0000 000 0
Q ss_pred Ccccc---------c--ccCHhHhhh--CCcEEEEceEEEEecc-ccccEEEccCCCEEecCEEEEcCCCCC
Q psy2951 646 KADSI---------L--LRTEEFYKD--NDIHVIKGKKIISDSE-LNEKKIKLQDGTSIDFTKIYLATGSSP 703 (1466)
Q Consensus 646 ~~~~~---------~--~~~~~~~~~--~gv~~~~~~~v~~i~~-~~~~~v~~~~~~~~~~d~lviAtG~~~ 703 (1466)
....+ . ..+.+.+.+ .+++++++++|+++.. .+...+++.+|.++.+|.||.|+|...
T Consensus 82 ~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S 153 (397)
T 2vou_A 82 TGERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGAS 153 (397)
T ss_dssp TCCEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTC
T ss_pred CCCccccccCcccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCEEEEEECCCCEEECCEEEECCCcch
Confidence 00000 0 001122222 3889999999988832 234567778888999999999999654
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=1.2e-05 Score=97.54 Aligned_cols=107 Identities=16% Similarity=0.208 Sum_probs=67.8
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCC--CCCCcc--c----hhcc----------------------
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP--YDRVKL--S----KQLD---------------------- 644 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~--~~~~~~--~----~~~~---------------------- 644 (1466)
.+||+||||||||+++|+.|+++|++ |+++|+.+... ...+.. . ..++
T Consensus 6 ~~dVvIVGaG~aGl~aA~~La~~G~~--V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 83 (453)
T 3atr_A 6 KYDVLIIGGGFAGSSAAYQLSRRGLK--ILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYSPD 83 (453)
T ss_dssp ECSEEEECCSHHHHHHHHHHSSSSCC--EEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEECTT
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCC--EEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEECCC
Confidence 47999999999999999999999988 78888765321 100000 0 0000
Q ss_pred -------------cCcccccccCHhHhhhCCcEEEEceEEEEeccccccE---EEcc---CCC--EEecCEEEEcCCCCC
Q psy2951 645 -------------IKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKK---IKLQ---DGT--SIDFTKIYLATGSSP 703 (1466)
Q Consensus 645 -------------~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~---v~~~---~~~--~~~~d~lviAtG~~~ 703 (1466)
.+...+...+.+.+.+.|++++.+++|+.+ ..++.. |++. +|+ ++.+|.||.|+|...
T Consensus 84 ~~~~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i-~~~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s 162 (453)
T 3atr_A 84 MQTVWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKP-IFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSR 162 (453)
T ss_dssp SSCEEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEE-EEETTEEEEEEEEETTTTEEEEEECSEEEECCGGGC
T ss_pred CceEEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEE-EEECCEEEEEEEEEcCCCceEEEEcCEEEECcCCch
Confidence 000011111223345579999999999888 433332 3343 555 799999999999644
Q ss_pred C
Q psy2951 704 R 704 (1466)
Q Consensus 704 ~ 704 (1466)
.
T Consensus 163 ~ 163 (453)
T 3atr_A 163 S 163 (453)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=8.1e-06 Score=97.68 Aligned_cols=37 Identities=24% Similarity=0.380 Sum_probs=31.0
Q ss_pred CCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcC
Q psy2951 40 SGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITD 76 (1466)
Q Consensus 40 ~~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~ 76 (1466)
..+++||+||||||+|+++|+.|++.|.+|.|+|...
T Consensus 20 ~~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~ 56 (407)
T 3rp8_A 20 FQGHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVK 56 (407)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 3457899999999999999999999999988877554
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.89 E-value=1.2e-05 Score=93.67 Aligned_cols=103 Identities=17% Similarity=0.249 Sum_probs=67.3
Q ss_pred CcEEEECCchHHHHHHHHHHh---cCCCCcEEEEcCCCCCCCCCC---------------CC-----ch---hh----c-
Q psy2951 1067 DTFIVVGGGPSGATCVETLRQ---NGFTGKLYFITDENFLPYDRV---------------KL-----SK---QL----D- 1115 (1466)
Q Consensus 1067 ~~vvIVG~G~aGl~aA~~L~~---~g~~~~i~li~~~~~~~~~~~---------------~l-----~~---~~----~- 1115 (1466)
++|+|||||++|+++|..|++ .|. +|+|||+++..+.... .. .. .+ .
T Consensus 2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~--~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~ 79 (342)
T 3qj4_A 2 AQVLIVGAGMTGSLCAALLRRQTSGPL--YLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYDE 79 (342)
T ss_dssp EEEEEECCSHHHHHHHHHHHSCC-CCE--EEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHHH
T ss_pred CcEEEECCcHHHHHHHHHHHhhccCCc--eEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHHH
Confidence 589999999999999999999 888 9999999864331100 00 00 00 0
Q ss_pred ----cCccccc--------------c--c--C----hhhhccCCcEEEcCCeEEEeecCCCC--eEEecCCcEEecCeEE
Q psy2951 1116 ----IKADSIL--------------L--R--T----EEFYKDNDIHVIKGKKIISDSELNEK--KIKLQDGTSIDFTKIY 1167 (1466)
Q Consensus 1116 ----~~~~~~~--------------~--~--~----~~~~~~~~v~~~~~~~v~~i~d~~~~--~v~~~~g~~~~yd~lv 1167 (1466)
....... . . . ..+.+..+++++++++|++| ..... +|.+++|..+.+|.||
T Consensus 80 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~i~~~~~V~~i-~~~~~~~~v~~~~g~~~~ad~vV 158 (342)
T 3qj4_A 80 LLAYGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKESGAEVYFRHRVTQI-NLRDDKWEVSKQTGSPEQFDLIV 158 (342)
T ss_dssp HHHTTSCEECCSCEETCCC--CCEEEECTTCTTHHHHHHHHHHTCEEESSCCEEEE-EECSSSEEEEESSSCCEEESEEE
T ss_pred HHhCCCeecCchhhcceeccCCccceecCCCHHHHHHHHHHhcCCEEEeCCEEEEE-EEcCCEEEEEECCCCEEEcCEEE
Confidence 0000000 0 0 0 01222237899999999999 65433 5777788889999999
Q ss_pred EecCC
Q psy2951 1168 LATGS 1172 (1466)
Q Consensus 1168 lAtG~ 1172 (1466)
+|+..
T Consensus 159 ~A~p~ 163 (342)
T 3qj4_A 159 LTMPV 163 (342)
T ss_dssp ECSCH
T ss_pred ECCCH
Confidence 99974
|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 | Back alignment and structure |
|---|
Probab=97.88 E-value=1.7e-05 Score=98.92 Aligned_cols=38 Identities=18% Similarity=0.410 Sum_probs=33.2
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCC
Q psy2951 593 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFL 632 (1466)
Q Consensus 593 ~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~ 632 (1466)
....||||||||+|||+||+.|+++|.+ |+++|+.+..
T Consensus 119 ~~~~DVvVVG~G~aGl~aA~~la~~G~~--V~vlEk~~~~ 156 (566)
T 1qo8_A 119 SETTQVLVVGAGSAGFNASLAAKKAGAN--VILVDKAPFS 156 (566)
T ss_dssp SEEEEEEEECCSHHHHHHHHHHHHHTCC--EEEECSSSSS
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCc--EEEEeCCCCC
Confidence 3467999999999999999999999987 8888887644
|
| >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} | Back alignment and structure |
|---|
Probab=97.87 E-value=2.9e-05 Score=94.87 Aligned_cols=110 Identities=14% Similarity=0.226 Sum_probs=69.2
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCC---------------Cccchh-----------cc-
Q psy2951 592 SGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR---------------VKLSKQ-----------LD- 644 (1466)
Q Consensus 592 ~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~---------------~~~~~~-----------~~- 644 (1466)
.+..++|+||||||+|+++|..|+++|.+ |+++|+.+...... ..+... +.
T Consensus 9 ~~~~~dVlIVGaGpaGl~~A~~La~~G~~--v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~ 86 (499)
T 2qa2_A 9 HRSDASVIVVGAGPAGLMLAGELRLGGVD--VMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGG 86 (499)
T ss_dssp --CCEEEEEECCSHHHHHHHHHHHHTTCC--EEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETT
T ss_pred cCCCCCEEEECcCHHHHHHHHHHHHCCCC--EEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceecc
Confidence 34578999999999999999999999988 77777754322100 000000 00
Q ss_pred --cC---------------cccccccCHhHhhhCCcEEEEceEEEEeccc-cccEEEccCCC---EEecCEEEEcCCCCC
Q psy2951 645 --IK---------------ADSILLRTEEFYKDNDIHVIKGKKIISDSEL-NEKKIKLQDGT---SIDFTKIYLATGSSP 703 (1466)
Q Consensus 645 --~~---------------~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~-~~~~v~~~~~~---~~~~d~lviAtG~~~ 703 (1466)
.+ ...+...+.+.+.+.|++++++++|+++... +..++++.++. ++++|+||.|.|...
T Consensus 87 ~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S 166 (499)
T 2qa2_A 87 RPVDFGVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGRS 166 (499)
T ss_dssp EEEEGGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEECCCTTC
T ss_pred eecccccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCccc
Confidence 00 0001111223345679999999999988322 23456666654 799999999999653
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... | Back alignment and structure |
|---|
Probab=97.86 E-value=2.3e-05 Score=93.32 Aligned_cols=108 Identities=15% Similarity=0.184 Sum_probs=69.9
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCC------CCCC-----------Cccchhc--------------
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFL------PYDR-----------VKLSKQL-------------- 643 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~------~~~~-----------~~~~~~~-------------- 643 (1466)
.+||+|||||++|+++|+.|++.|.+ |+++|+.+.. .... ..+...+
T Consensus 2 ~~dV~IvGaG~aGl~~A~~L~~~G~~--v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~ 79 (394)
T 1k0i_A 2 KTQVAIIGAGPSGLLLGQLLHKAGID--NVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAF 79 (394)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHTCC--EEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEE
T ss_pred CccEEEECCCHHHHHHHHHHHHCCCC--EEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEEE
Confidence 36899999999999999999999988 7888876421 0000 0000000
Q ss_pred -------c------------cCcccccccCHhHhhhCCcEEEEceEEEEeccc--cccEEEc-cCCC--EEecCEEEEcC
Q psy2951 644 -------D------------IKADSILLRTEEFYKDNDIHVIKGKKIISDSEL--NEKKIKL-QDGT--SIDFTKIYLAT 699 (1466)
Q Consensus 644 -------~------------~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~--~~~~v~~-~~~~--~~~~d~lviAt 699 (1466)
. .....+...+.+.+.+.|++++++++|+.+... ....+++ .+|. ++.+|.||.|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV~Ad 159 (394)
T 1k0i_A 80 AGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCD 159 (394)
T ss_dssp TTEEEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECC
T ss_pred CCceEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEEECC
Confidence 0 000111122233445679999999999988332 2356766 6776 79999999999
Q ss_pred CCCCC
Q psy2951 700 GSSPR 704 (1466)
Q Consensus 700 G~~~~ 704 (1466)
|....
T Consensus 160 G~~S~ 164 (394)
T 1k0i_A 160 GFHGI 164 (394)
T ss_dssp CTTCS
T ss_pred CCCcH
Confidence 96544
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=2.4e-05 Score=93.22 Aligned_cols=109 Identities=19% Similarity=0.280 Sum_probs=67.3
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCC----CCccch--------hcc-----------------
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD----RVKLSK--------QLD----------------- 644 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~----~~~~~~--------~~~----------------- 644 (1466)
..++|+|||||++|+++|+.|++.|.+ |+++|+.+..... ...+.. .++
T Consensus 25 ~~~dV~IVGaG~aGl~~A~~L~~~G~~--v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~ 102 (398)
T 2xdo_A 25 SDKNVAIIGGGPVGLTMAKLLQQNGID--VSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVNIA 102 (398)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTCE--EEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCEEEE
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCC--EEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccceEEE
Confidence 457999999999999999999999987 7777776432211 000000 000
Q ss_pred -cCcccccc-----------------cCHhHhhhC--CcEEEEceEEEEeccc-cccEEEccCCCEEecCEEEEcCCCCC
Q psy2951 645 -IKADSILL-----------------RTEEFYKDN--DIHVIKGKKIISDSEL-NEKKIKLQDGTSIDFTKIYLATGSSP 703 (1466)
Q Consensus 645 -~~~~~~~~-----------------~~~~~~~~~--gv~~~~~~~v~~i~~~-~~~~v~~~~~~~~~~d~lviAtG~~~ 703 (1466)
.....+.. .+.+.+.+. +++++++++|+.+... +...+++.+|.++.+|.||.|+|...
T Consensus 103 ~~~g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S 182 (398)
T 2xdo_A 103 DEKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMS 182 (398)
T ss_dssp CSSSEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCTTSEEESCCEEEEEECSSSEEEEETTSCCEEESEEEECSCTTC
T ss_pred CCCCCchhhccccccCCCCCceECHHHHHHHHHhhcCCCEEEECCEEEEEEECCCEEEEEECCCcEEecCEEEECCCcch
Confidence 00000000 001112111 4678899999888322 23467778888999999999999654
Q ss_pred C
Q psy2951 704 R 704 (1466)
Q Consensus 704 ~ 704 (1466)
.
T Consensus 183 ~ 183 (398)
T 2xdo_A 183 K 183 (398)
T ss_dssp S
T ss_pred h
Confidence 3
|
| >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} | Back alignment and structure |
|---|
Probab=97.85 E-value=3e-05 Score=94.79 Aligned_cols=110 Identities=14% Similarity=0.208 Sum_probs=69.1
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCC---------------Cccchhc-----------c-
Q psy2951 592 SGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR---------------VKLSKQL-----------D- 644 (1466)
Q Consensus 592 ~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~---------------~~~~~~~-----------~- 644 (1466)
.+..++|+||||||+|+++|..|+++|.+ |+++|+.+...... ..+...+ .
T Consensus 8 ~~~~~dVlIVGaGpaGl~~A~~La~~G~~--v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~ 85 (500)
T 2qa1_A 8 HRSDAAVIVVGAGPAGMMLAGELRLAGVE--VVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHFGG 85 (500)
T ss_dssp CCSBCSEEEECCSHHHHHHHHHHHHTTCC--EEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCBCCEEEETT
T ss_pred ccCCCCEEEECcCHHHHHHHHHHHHCCCC--EEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhccccccccccc
Confidence 34568999999999999999999999988 77777654321000 0000000 0
Q ss_pred --cC---------------cccccccCHhHhhhCCcEEEEceEEEEeccc-cccEEEccCCC---EEecCEEEEcCCCCC
Q psy2951 645 --IK---------------ADSILLRTEEFYKDNDIHVIKGKKIISDSEL-NEKKIKLQDGT---SIDFTKIYLATGSSP 703 (1466)
Q Consensus 645 --~~---------------~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~-~~~~v~~~~~~---~~~~d~lviAtG~~~ 703 (1466)
.+ ...+...+.+.+.+.|++++++++|+++... +..++++.++. ++++|+||.|.|...
T Consensus 86 ~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S 165 (500)
T 2qa1_A 86 LPIDFGVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDGGRS 165 (500)
T ss_dssp EEEEGGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECCCTTC
T ss_pred eecccccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEEECCCcch
Confidence 00 0001111223345679999999999988322 23345555554 799999999999653
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=4.7e-05 Score=90.65 Aligned_cols=106 Identities=22% Similarity=0.302 Sum_probs=68.4
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCC-C---CCc----h-hhc--c----------Cc------
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR-V---KLS----K-QLD--I----------KA------ 1118 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~-~---~l~----~-~~~--~----------~~------ 1118 (1466)
..+|+|||||++|+++|..|++.|. +|+|||+.+...... . .+. . .+. . ..
T Consensus 26 ~~dV~IVGaG~aGl~~A~~L~~~G~--~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~ 103 (398)
T 2xdo_A 26 DKNVAIIGGGPVGLTMAKLLQQNGI--DVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVNIAD 103 (398)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTC--EEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCEEEEC
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC--CEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccceEEEC
Confidence 4689999999999999999999998 999999986532210 0 000 0 000 0 00
Q ss_pred --cccccc---C---------------hhhhcc--CCcEEEcCCeEEEeecCCCC--eEEecCCcEEecCeEEEecCCCC
Q psy2951 1119 --DSILLR---T---------------EEFYKD--NDIHVIKGKKIISDSELNEK--KIKLQDGTSIDFTKIYLATGSSP 1174 (1466)
Q Consensus 1119 --~~~~~~---~---------------~~~~~~--~~v~~~~~~~v~~i~d~~~~--~v~~~~g~~~~yd~lvlAtG~~~ 1174 (1466)
...... + .+.+.+ .+++++++++|+++ +.... +|++.+|.++.+|.||.|+|...
T Consensus 104 ~~g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i-~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S 182 (398)
T 2xdo_A 104 EKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVML-EPGKKKWTLTFENKPSETADLVILANGGMS 182 (398)
T ss_dssp SSSEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCTTSEEESCCEEEE-EECSSSEEEEETTSCCEEESEEEECSCTTC
T ss_pred CCCCchhhccccccCCCCCceECHHHHHHHHHhhcCCCEEEECCEEEEE-EECCCEEEEEECCCcEEecCEEEECCCcch
Confidence 000000 0 001111 13578889999999 65433 57778898999999999999744
|
| >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=7.4e-05 Score=88.77 Aligned_cols=80 Identities=18% Similarity=0.244 Sum_probs=57.1
Q ss_pred CCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccCc
Q psy2951 1228 VKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNT 1307 (1466)
Q Consensus 1228 g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~~ 1307 (1466)
+....++.+....+. +..+...|.+.++++|++++.+++|++++. +++. ..|.+.+| ++.+|.||+|+|...+
T Consensus 134 ~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~-~~~~-~~v~~~~g-~~~a~~vV~A~G~~~~- 206 (389)
T 2gf3_A 134 ENYNAIFEPNSGVLF---SENCIRAYRELAEARGAKVLTHTRVEDFDI-SPDS-VKIETANG-SYTADKLIVSMGAWNS- 206 (389)
T ss_dssp TTEEEEEETTCEEEE---HHHHHHHHHHHHHHTTCEEECSCCEEEEEE-CSSC-EEEEETTE-EEEEEEEEECCGGGHH-
T ss_pred CCceEEEeCCCcEEe---HHHHHHHHHHHHHHCCCEEEcCcEEEEEEe-cCCe-EEEEeCCC-EEEeCEEEEecCccHH-
Confidence 345666666543332 467788889999999999999999999983 3333 34677666 7999999999997653
Q ss_pred cccccCC
Q psy2951 1308 NYLDGKG 1314 (1466)
Q Consensus 1308 ~~~~~~g 1314 (1466)
.++...+
T Consensus 207 ~l~~~~g 213 (389)
T 2gf3_A 207 KLLSKLN 213 (389)
T ss_dssp HHGGGGT
T ss_pred HHhhhhc
Confidence 3444433
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.81 E-value=4.3e-05 Score=91.79 Aligned_cols=60 Identities=15% Similarity=0.245 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccCcccc
Q psy2951 1247 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYL 1310 (1466)
Q Consensus 1247 ~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~~~~~ 1310 (1466)
..+.+.|.+.++++|++++++++|++|. .+++++ | ..+|+++.||.||+++|......++
T Consensus 189 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~-~~~~~v--V-~~~g~~~~ad~Vv~a~~~~~~~~ll 248 (421)
T 3nrn_A 189 KAVIDELERIIMENKGKILTRKEVVEIN-IEEKKV--Y-TRDNEEYSFDVAISNVGVRETVKLI 248 (421)
T ss_dssp HHHHHHHHHHHHTTTCEEESSCCEEEEE-TTTTEE--E-ETTCCEEECSEEEECSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEcCCeEEEEE-EECCEE--E-EeCCcEEEeCEEEECCCHHHHHHhc
Confidence 5678889999999999999999999998 455554 5 5678899999999999975443333
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} | Back alignment and structure |
|---|
Probab=97.80 E-value=2.1e-05 Score=96.89 Aligned_cols=35 Identities=29% Similarity=0.387 Sum_probs=30.7
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcC
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITD 76 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~ 76 (1466)
.++||+|||||+||+++|+.|++.|++|.|+|...
T Consensus 6 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~ 40 (512)
T 3e1t_A 6 EVFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREA 40 (512)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCC
Confidence 35899999999999999999999999988876543
|
| >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} | Back alignment and structure |
|---|
Probab=97.79 E-value=1.8e-05 Score=98.28 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=30.9
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcC
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITD 76 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~ 76 (1466)
.++||+||||||+|+++|+.|+++|.++.|+|...
T Consensus 4 ~~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~ 38 (535)
T 3ihg_A 4 HEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRP 38 (535)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred ccCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 46899999999999999999999999988876543
|
| >2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=3.1e-05 Score=96.42 Aligned_cols=36 Identities=19% Similarity=0.535 Sum_probs=31.6
Q ss_pred CCeEEEEcCchHHHHHHHHHHHc------CCCccEEEEcCCCCC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQN------GFTGKLYFITDENFL 632 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~------g~~~~v~~~~~~~~~ 632 (1466)
.+||+||||||||+++|+.|+++ |.+ |+++|+.+..
T Consensus 35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~--V~vlEk~~~~ 76 (584)
T 2gmh_A 35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLR--VCLVEKAAHI 76 (584)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCC--EEEECSSSST
T ss_pred CCCEEEECcCHHHHHHHHHHHhcccccCCCCc--EEEEeCCCCC
Confidence 47999999999999999999999 877 8888887543
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.79 E-value=1.3e-05 Score=96.50 Aligned_cols=60 Identities=15% Similarity=0.249 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCcccc
Q psy2951 776 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYL 839 (1466)
Q Consensus 776 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~ 839 (1466)
..+.+.+.+.+++.|++++++++|++|.. +++++ + ..+|+++.+|.||+|+|......++
T Consensus 189 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~-~~~~v--V-~~~g~~~~ad~Vv~a~~~~~~~~ll 248 (421)
T 3nrn_A 189 KAVIDELERIIMENKGKILTRKEVVEINI-EEKKV--Y-TRDNEEYSFDVAISNVGVRETVKLI 248 (421)
T ss_dssp HHHHHHHHHHHHTTTCEEESSCCEEEEET-TTTEE--E-ETTCCEEECSEEEECSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEcCCeEEEEEE-ECCEE--E-EeCCcEEEeCEEEECCCHHHHHHhc
Confidence 56778888999999999999999999984 34444 4 4567899999999999976443333
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00015 Score=86.30 Aligned_cols=98 Identities=19% Similarity=0.228 Sum_probs=74.5
Q ss_pred eEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcc-------------------------------------------
Q psy2951 1207 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQE------------------------------------------- 1243 (1466)
Q Consensus 1207 ~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~------------------------------------------- 1243 (1466)
.|+|||+|+.|+-+|..|+++|.+|+|+++.+.+-..
T Consensus 6 DViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~~~g~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (397)
T 3oz2_A 6 DVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIANEVKGARIYGPSEKRPII 85 (397)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEEEEESEEEEECTTCSSCEE
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCceecccCHHHHHHcCCCchhhhhhcccceEEEEeCCCceEee
Confidence 5999999999999999999999999999986432000
Q ss_pred ------------ccc-HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcC-CC--CeeecCEEEEeecccc
Q psy2951 1244 ------------SLG-KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLD-NG--TTIPADLVIVGIGTVL 1305 (1466)
Q Consensus 1244 ------------~~~-~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~-~g--~~i~~D~vv~a~G~~p 1305 (1466)
.+. ..+...|.+..++.|++++.+++++.+. .+++.+..+... ++ .++.+|+||-|.|...
T Consensus 86 ~~~~~~~~~~~~~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~-~~~~~~~~v~~~~~~~~~~~~a~~vIgAdG~~S 162 (397)
T 3oz2_A 86 LQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVI-KENGKVAGAKIRHNNEIVDVRAKMVIAADGFES 162 (397)
T ss_dssp EECSSSSCCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEE-EETTEEEEEEEEETTEEEEEEEEEEEECCCTTC
T ss_pred ccccccCCceeEEEEHHHHHHHHHHHHHhcCcEEeeeeeeeeee-eccceeeeeeecccccceEEEEeEEEeCCcccc
Confidence 000 3456678888889999999999999987 455566555433 33 4689999999999643
|
| >3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00012 Score=88.86 Aligned_cols=66 Identities=24% Similarity=0.346 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhcCcEEEccceEEEEEec--------------CCCceEEEECCCCcEE--ecCEEEEccccccCcccc
Q psy2951 776 KEVGERITKLFESKGVKFVMKANVSSFEKN--------------EKNDVTAANLDNGTTI--PADLVIVGIGTVLNTNYL 839 (1466)
Q Consensus 776 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~--------------~~~~~~~v~~~~g~~i--~~D~vi~a~G~~p~~~~~ 839 (1466)
..+...+.+.+++.|++++.+++|+++... +++++..+.+.+| ++ .+|.||+|+|.... .++
T Consensus 181 ~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG~~s~-~l~ 258 (448)
T 3axb_A 181 EKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAGVWSN-RLL 258 (448)
T ss_dssp HHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCGGGHH-HHH
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCCcCHH-HHH
Confidence 467788888899999999999999999841 3445556777777 68 99999999997533 355
Q ss_pred ccCC
Q psy2951 840 DGKG 843 (1466)
Q Consensus 840 ~~~g 843 (1466)
..++
T Consensus 259 ~~~g 262 (448)
T 3axb_A 259 NPLG 262 (448)
T ss_dssp GGGT
T ss_pred HHcC
Confidence 4443
|
| >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} | Back alignment and structure |
|---|
Probab=97.70 E-value=4.4e-05 Score=93.24 Aligned_cols=112 Identities=15% Similarity=0.191 Sum_probs=68.7
Q ss_pred CCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCC-------------CCCccchhc--------------c
Q psy2951 40 SGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY-------------DRVKLSKQL--------------D 92 (1466)
Q Consensus 40 ~~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~-------------~~~~~~~~~--------------~ 92 (1466)
...++||+||||||+|+++|..|++.|.++.|+|......... ....+...+ .
T Consensus 9 ~~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 88 (499)
T 2qa2_A 9 HRSDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGGRP 88 (499)
T ss_dssp --CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETTEE
T ss_pred cCCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceeccee
Confidence 3456899999999999999999999999998887544321100 000000000 0
Q ss_pred cCc---------------ccccccChhhhhcCCeEEEeCceEEEec-cccccEEEecCCc---EEecCEEEEccCCCC
Q psy2951 93 IKA---------------DSILLRTEEFYKDNDIHVIKGKKIISDS-ELNEKKIKLQDGT---SIDFTKIYLATGSSP 151 (1466)
Q Consensus 93 ~~~---------------~~~~~~~~~~~~~~~v~~~~~~~v~~~~-~~~~~~v~~~~~~---~~~~d~lviAtG~~~ 151 (1466)
... ..+...+.+.+.+.+++++.++.+.... +.+..++++.++. ++++|+||.|.|.+.
T Consensus 89 ~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S 166 (499)
T 2qa2_A 89 VDFGVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGRS 166 (499)
T ss_dssp EEGGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEECCCTTC
T ss_pred cccccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCccc
Confidence 000 0011112333445689999998876532 2334566666664 799999999999764
|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=2.1e-05 Score=93.24 Aligned_cols=35 Identities=20% Similarity=0.257 Sum_probs=30.6
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC
Q psy2951 593 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 630 (1466)
Q Consensus 593 ~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~ 630 (1466)
+.+++|+|||||++|+++|+.|+ +|++ |+++|+.+
T Consensus 7 ~~~~dv~IIGaGi~Gls~A~~La-~G~~--V~vlE~~~ 41 (381)
T 3nyc_A 7 PIEADYLVIGAGIAGASTGYWLS-AHGR--VVVLEREA 41 (381)
T ss_dssp EEECSEEEECCSHHHHHHHHHHT-TTSC--EEEECSSS
T ss_pred CCcCCEEEECCcHHHHHHHHHHh-CCCC--EEEEECCC
Confidence 34689999999999999999999 5887 88888874
|
| >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} | Back alignment and structure |
|---|
Probab=97.70 E-value=5.4e-05 Score=92.52 Aligned_cols=111 Identities=15% Similarity=0.187 Sum_probs=68.4
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCC-------------CCCccchhc--------------cc
Q psy2951 41 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY-------------DRVKLSKQL--------------DI 93 (1466)
Q Consensus 41 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~~~~-------------~~~~~~~~~--------------~~ 93 (1466)
..++||+||||||+|+++|..|++.|.++.|+|......... ....+...+ ..
T Consensus 9 ~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~ 88 (500)
T 2qa1_A 9 RSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHFGGLPI 88 (500)
T ss_dssp CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCBCCEEEETTEEE
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhccccccccccceec
Confidence 446899999999999999999999999998887544321000 000000000 00
Q ss_pred Cc---------------ccccccChhhhhcCCeEEEeCceEEEec-cccccEEEecCCc---EEecCEEEEccCCCC
Q psy2951 94 KA---------------DSILLRTEEFYKDNDIHVIKGKKIISDS-ELNEKKIKLQDGT---SIDFTKIYLATGSSP 151 (1466)
Q Consensus 94 ~~---------------~~~~~~~~~~~~~~~v~~~~~~~v~~~~-~~~~~~v~~~~~~---~~~~d~lviAtG~~~ 151 (1466)
.. ..+...+.+.+++.+++++.++.+.... +.+..++++.++. ++++|+||.|.|.+.
T Consensus 89 ~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S 165 (500)
T 2qa1_A 89 DFGVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDGGRS 165 (500)
T ss_dssp EGGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECCCTTC
T ss_pred ccccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEEECCCcch
Confidence 00 0011112333445689999998876532 2233456666654 799999999999764
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=97.70 E-value=6.1e-05 Score=85.12 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=32.4
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHc--CCCccEEEEcCCCCCC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQN--GFTGKLYFITDENFLP 633 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~--g~~~~v~~~~~~~~~~ 633 (1466)
..+||+|||||+||+++|+.|+++ |.+ |+++|+...+.
T Consensus 78 ~~~DVvIVGgG~AGL~aA~~La~~~~G~~--V~LiEk~~~~G 117 (344)
T 3jsk_A 78 AETDIVIVGAGSCGLSAAYVLSTLRPDLR--ITIVEAGVAPG 117 (344)
T ss_dssp HBCSEEEECCSHHHHHHHHHHHHHCTTSC--EEEEESSSSCC
T ss_pred CcCCEEEECccHHHHHHHHHHHhcCCCCE--EEEEeCCCccC
Confidence 358999999999999999999998 877 88888875443
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=5.4e-05 Score=90.16 Aligned_cols=34 Identities=24% Similarity=0.488 Sum_probs=30.4
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 630 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~ 630 (1466)
..||+|||||++|+++|+.|+++|.+ |+++|+..
T Consensus 4 ~~DVvIIGaG~~Gl~~A~~La~~G~~--V~vlE~~~ 37 (397)
T 2oln_A 4 SYDVVVVGGGPVGLATAWQVAERGHR--VLVLERHT 37 (397)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCC--EEEEESSC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCe--EEEEeCCC
Confidence 47999999999999999999999988 77777764
|
| >2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.67 E-value=5.1e-05 Score=89.55 Aligned_cols=34 Identities=21% Similarity=0.368 Sum_probs=30.7
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 630 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~ 630 (1466)
.+||+|||||++|+++|+.|+++|.+ |+++|+..
T Consensus 2 ~~dvvIIG~Gi~Gl~~A~~La~~G~~--V~vle~~~ 35 (372)
T 2uzz_A 2 KYDLIIIGSGSVGAAAGYYATRAGLN--VLMTDAHM 35 (372)
T ss_dssp CEEEEESCTTHHHHHHHHHHHHTTCC--EEEECSSC
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCe--EEEEecCC
Confidence 47999999999999999999999987 88888764
|
| >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=9.3e-05 Score=92.05 Aligned_cols=38 Identities=16% Similarity=0.390 Sum_probs=32.8
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP 633 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~ 633 (1466)
..++|+|||+|+|||++|+.|+++|++ |+++|+.+...
T Consensus 125 ~~~~v~viG~G~aG~~aa~~~~~~g~~--v~~~e~~~~~~ 162 (572)
T 1d4d_A 125 ETTDVVIIGSGGAGLAAAVSARDAGAK--VILLEKEPIPG 162 (572)
T ss_dssp EECSEEEECCSHHHHHHHHHHHSSSCC--EEEECSSSSSC
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCc--EEEEecCCCCC
Confidence 457999999999999999999999987 88888875443
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00018 Score=86.39 Aligned_cols=100 Identities=21% Similarity=0.244 Sum_probs=78.5
Q ss_pred CeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCC--------cc----------------------------------
Q psy2951 1206 SNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF--------QE---------------------------------- 1243 (1466)
Q Consensus 1206 ~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~--------~~---------------------------------- 1243 (1466)
.+|+|||+|..|+-+|..|++.|.+|+++++.+.+- +.
T Consensus 6 ~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (421)
T 3nix_A 6 VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGESLLPRCMEHLDEAGFLDAVKAQGFQQKFGAKFVRGKEIA 85 (421)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCGGGHHHHHHTTCHHHHHHTTCEEECEEEEEETTEEE
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccCcccHhHHHHHHHcCChHHHHHcCCcccCCcEEEeCCeeE
Confidence 479999999999999999999999999999875220 00
Q ss_pred ----------------cc-cHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCC--eeecCEEEEeeccc
Q psy2951 1244 ----------------SL-GKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGT--TIPADLVIVGIGTV 1304 (1466)
Q Consensus 1244 ----------------~~-~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~--~i~~D~vv~a~G~~ 1304 (1466)
.+ ...+.+.|.+.+++.|++++.+++|++++..+++....+.+.+|+ ++.+|+||.|+|..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~~ 165 (421)
T 3nix_A 86 DFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYG 165 (421)
T ss_dssp EEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECCGGG
T ss_pred EEeehhhcCCCCCceeEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCCCc
Confidence 00 034556777888888999999999999984334444567778887 79999999999976
Q ss_pred c
Q psy2951 1305 L 1305 (1466)
Q Consensus 1305 p 1305 (1466)
.
T Consensus 166 s 166 (421)
T 3nix_A 166 R 166 (421)
T ss_dssp C
T ss_pred h
Confidence 5
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=97.63 E-value=9.2e-05 Score=88.71 Aligned_cols=106 Identities=15% Similarity=0.171 Sum_probs=66.3
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCC----ccch-------hcc--------------------
Q psy2951 596 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRV----KLSK-------QLD-------------------- 644 (1466)
Q Consensus 596 ~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~----~~~~-------~~~-------------------- 644 (1466)
.+|+|||||||||++|..|+++|++ |+++|+.+.+..... .+.. .+.
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~G~~--v~v~Er~~~~~~~~~G~~i~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~ 79 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKHGIK--VTIYERNSAASSILPGYGIHINSFGKQALQECLPAENWLAFEEASRYIGGQSR 79 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCE--EEEECSSCSSCSSCCCCEEEECHHHHHHHHHHSCHHHHHHHHHHCEEECCCCE
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCC--EEEEecCCCCCcCCCceEEeeCHHHHHHHHHcCChHHHHHhhhhhcccCccee
Confidence 6899999999999999999999988 777777643221100 0000 000
Q ss_pred --cCcccc---------------------c--ccCHhHh-hhCCcEEEEceEEEEecccc--ccEEEccCCCEEecCEEE
Q psy2951 645 --IKADSI---------------------L--LRTEEFY-KDNDIHVIKGKKIISDSELN--EKKIKLQDGTSIDFTKIY 696 (1466)
Q Consensus 645 --~~~~~~---------------------~--~~~~~~~-~~~gv~~~~~~~v~~i~~~~--~~~v~~~~~~~~~~d~lv 696 (1466)
.....+ + ..+.+.+ +..+.+++++++++.+...+ ..++++++|+++++|.||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~v~~~~~v~~~~~~~~~~v~v~~~dG~~~~adlvV 159 (412)
T 4hb9_A 80 FYNERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILNKGLANTIQWNKTFVRYEHIENGGIKIFFADGSHENVDVLV 159 (412)
T ss_dssp EECTTSCEEEC--------------CEEEEEHHHHHHHHHTTCTTTEECSCCEEEEEECTTSCEEEEETTSCEEEESEEE
T ss_pred EecCCcceecccCCccccccccccccceEeeHHHHHHHHHhhccceEEEEEEEEeeeEcCCCeEEEEECCCCEEEeeEEE
Confidence 000000 0 0011222 22355688888888873322 356888899999999999
Q ss_pred EcCCCCC
Q psy2951 697 LATGSSP 703 (1466)
Q Consensus 697 iAtG~~~ 703 (1466)
-|-|...
T Consensus 160 gADG~~S 166 (412)
T 4hb9_A 160 GADGSNS 166 (412)
T ss_dssp ECCCTTC
T ss_pred ECCCCCc
Confidence 9999643
|
| >2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00056 Score=84.37 Aligned_cols=59 Identities=19% Similarity=0.218 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHh-CCcEEEcCceEEEEEecCCCCeEEEEcCCCcEEeccEEEEeeccccC
Q psy2951 224 KEVGERITKLFES-KGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLN 283 (1466)
Q Consensus 224 ~~~~~~l~~~l~~-~GV~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~ 283 (1466)
..+.+.+.+.+++ .|++++.+ +|++++.++++.+..+.+.+|.++.+|.||.|+|....
T Consensus 175 ~~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~ 234 (526)
T 2pyx_A 175 AKFSQLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSL 234 (526)
T ss_dssp HHHHHHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCC
T ss_pred HHHHHHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchH
Confidence 4566777888888 89999999 59999875445556677778778999999999998654
|
| >1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00021 Score=93.51 Aligned_cols=58 Identities=28% Similarity=0.346 Sum_probs=49.2
Q ss_pred cHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeecccc
Q psy2951 1246 GKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVL 1305 (1466)
Q Consensus 1246 ~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p 1305 (1466)
+..+...|.+.++++|++++.+++|+++. .+++.+..|.+.+| ++.||.||+|+|...
T Consensus 150 p~~l~~~L~~~a~~~Gv~i~~~t~V~~i~-~~~~~v~~V~t~~G-~i~Ad~VV~AaG~~s 207 (830)
T 1pj5_A 150 AARAVQLLIKRTESAGVTYRGSTTVTGIE-QSGGRVTGVQTADG-VIPADIVVSCAGFWG 207 (830)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEE-EETTEEEEEEETTE-EEECSEEEECCGGGH
T ss_pred HHHHHHHHHHHHHHcCCEEECCceEEEEE-EeCCEEEEEEECCc-EEECCEEEECCccch
Confidence 45778889999999999999999999998 44556667888887 799999999999764
|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 | Back alignment and structure |
|---|
Probab=97.60 E-value=8.8e-05 Score=92.40 Aligned_cols=101 Identities=19% Similarity=0.251 Sum_probs=78.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcc-----------------------------------------
Q psy2951 1205 ESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQE----------------------------------------- 1243 (1466)
Q Consensus 1205 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~----------------------------------------- 1243 (1466)
.-+|+|||+|..|+.+|..|++.|.+|+|+++.+.+-..
T Consensus 121 ~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~s~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~~~~~~~ 200 (566)
T 1qo8_A 121 TTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQND 200 (566)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSC
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCceeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCC
Confidence 347999999999999999999999999999977532100
Q ss_pred ----------------------------------------------cccHHHHHHHHHHHHhCCcEEEcCceEEEEEecC
Q psy2951 1244 ----------------------------------------------SLGKEVGERITKLFESKGVKFVMKANVSSFEKNE 1277 (1466)
Q Consensus 1244 ----------------------------------------------~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~ 1277 (1466)
..+..+.+.|.+.+++.||+++++++|+++. .+
T Consensus 201 ~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~l~-~~ 279 (566)
T 1qo8_A 201 IKLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLV-VN 279 (566)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEE-EC
T ss_pred HHHHHHHHhccHHHHHHHHhcCCccccccccCCCCCCceeecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEE-EC
Confidence 0022345667777888999999999999998 44
Q ss_pred C-CcEEEEEcC--CCC--eeecCEEEEeeccccC
Q psy2951 1278 K-NDVTAANLD--NGT--TIPADLVIVGIGTVLN 1306 (1466)
Q Consensus 1278 ~-g~~~~v~l~--~g~--~i~~D~vv~a~G~~p~ 1306 (1466)
+ +++.+|.+. +|+ ++.+|.||+|+|....
T Consensus 280 ~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s~ 313 (566)
T 1qo8_A 280 DDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGM 313 (566)
T ss_dssp TTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTT
T ss_pred CCCcEEEEEEEeCCCcEEEEEcCEEEEecCCccc
Confidence 5 777777665 675 6899999999997543
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=5.9e-05 Score=90.17 Aligned_cols=34 Identities=24% Similarity=0.403 Sum_probs=30.9
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCC-CcEEEEcC
Q psy2951 43 KDTFIVVGGGPSGATCVETLRQNGFT-GKLYFITD 76 (1466)
Q Consensus 43 ~~dVvIIGgG~AGl~aA~~l~~~g~~-v~i~~~~~ 76 (1466)
++||+||||||+|+++|..|++.|.+ +.|+|...
T Consensus 4 ~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~ 38 (410)
T 3c96_A 4 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSS 38 (410)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence 57999999999999999999999999 98887554
|
| >3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00011 Score=90.12 Aligned_cols=55 Identities=18% Similarity=0.246 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccc
Q psy2951 1248 EVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTV 1304 (1466)
Q Consensus 1248 ~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~ 1304 (1466)
.+.+.|.+.+++.|++++++++|++|+. .++....|.+ ++.++.||.||++++..
T Consensus 235 ~l~~~l~~~l~~~g~~i~~~~~V~~i~~-~~~~~~~v~~-~~~~~~ad~vv~a~p~~ 289 (477)
T 3nks_A 235 MLPQALETHLTSRGVSVLRGQPVCGLSL-QAEGRWKVSL-RDSSLEADHVISAIPAS 289 (477)
T ss_dssp HHHHHHHHHHHHTTCEEECSCCCCEEEE-CGGGCEEEEC-SSCEEEESEEEECSCHH
T ss_pred HHHHHHHHHHHhcCCEEEeCCEEEEEEE-cCCceEEEEE-CCeEEEcCEEEECCCHH
Confidence 5777888889999999999999999983 3334345665 55689999999998753
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=7e-05 Score=89.51 Aligned_cols=35 Identities=23% Similarity=0.508 Sum_probs=28.8
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 630 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~ 630 (1466)
.++|+||||||+|+++|..|++.|.+ +|+++|+.+
T Consensus 4 ~~dVvIVGaG~aGl~~A~~L~~~G~~-~v~v~E~~~ 38 (410)
T 3c96_A 4 PIDILIAGAGIGGLSCALALHQAGIG-KVTLLESSS 38 (410)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCS-EEEEEESSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCC-eEEEEECCC
Confidence 47999999999999999999999975 155555554
|
| >2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00025 Score=87.47 Aligned_cols=59 Identities=19% Similarity=0.279 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccC
Q psy2951 1247 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLN 1306 (1466)
Q Consensus 1247 ~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~ 1306 (1466)
..+.+.|.+.+++.|++++.+ +|++++..+++.+..|.+.+|+++.+|+||.|+|....
T Consensus 173 ~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~ 231 (511)
T 2weu_A 173 DEVARYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRGL 231 (511)
T ss_dssp HHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGCC
T ss_pred HHHHHHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcchH
Confidence 457778888888899999999 99999843456677899999989999999999998654
|
| >3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=97.57 E-value=7.2e-05 Score=89.13 Aligned_cols=34 Identities=32% Similarity=0.560 Sum_probs=30.7
Q ss_pred CCeEEEEcCchHHHHHHHHHHHc--CCCccEEEEcCCC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQN--GFTGKLYFITDEN 630 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~--g~~~~v~~~~~~~ 630 (1466)
.+||+|||||++|+++|+.|+++ |.+ |+++|+..
T Consensus 36 ~~dVvIIGaGi~Gls~A~~La~~~pG~~--V~vlE~~~ 71 (405)
T 3c4n_A 36 AFDIVVIGAGRMGAACAFYLRQLAPGRS--LLLVEEGG 71 (405)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHCTTSC--EEEECSSC
T ss_pred cCCEEEECCcHHHHHHHHHHHhcCCCCe--EEEEeCCC
Confidence 47999999999999999999999 987 88888764
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00026 Score=88.35 Aligned_cols=101 Identities=21% Similarity=0.223 Sum_probs=78.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcc-----------------------------------------
Q psy2951 1205 ESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQE----------------------------------------- 1243 (1466)
Q Consensus 1205 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~----------------------------------------- 1243 (1466)
..+|+|||+|..|+.+|..|++.|.+|+|+++.+.+...
T Consensus 126 ~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~ 205 (571)
T 1y0p_A 126 TVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNIND 205 (571)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSC
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCceEEeCCCHHHHHhCCCCCHHHHHHHHHHhcCCCCC
Confidence 458999999999999999999999999999976533100
Q ss_pred ----------------------------------------------cccHHHHHHHHHHHHhCCcEEEcCceEEEEEecC
Q psy2951 1244 ----------------------------------------------SLGKEVGERITKLFESKGVKFVMKANVSSFEKNE 1277 (1466)
Q Consensus 1244 ----------------------------------------------~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~ 1277 (1466)
..+..+.+.|.+.+++.||+++++++|+++...+
T Consensus 206 ~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~g~~~g~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~ 285 (571)
T 1y0p_A 206 PALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDD 285 (571)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEECT
T ss_pred HHHHHHHHHccHHHHHHHHhcCCCCccCcccCCcCCCeeEecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEeeEeEEcC
Confidence 0013445567777888999999999999998333
Q ss_pred CCcEEEEEcC--CCC--eeecCEEEEeecccc
Q psy2951 1278 KNDVTAANLD--NGT--TIPADLVIVGIGTVL 1305 (1466)
Q Consensus 1278 ~g~~~~v~l~--~g~--~i~~D~vv~a~G~~p 1305 (1466)
++++.+|.+. +|+ ++.+|.||+|+|...
T Consensus 286 ~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~ 317 (571)
T 1y0p_A 286 KGTVKGILVKGMYKGYYWVKADAVILATGGFA 317 (571)
T ss_dssp TSCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred CCeEEEEEEEeCCCcEEEEECCeEEEeCCCcc
Confidence 3777777665 675 689999999999743
|
| >2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00077 Score=83.11 Aligned_cols=59 Identities=19% Similarity=0.218 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHh-cCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccC
Q psy2951 776 KEVGERITKLFES-KGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLN 835 (1466)
Q Consensus 776 ~~~~~~~~~~l~~-~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 835 (1466)
..+...+.+.+++ .|++++.+ ++++++..+++.+..+.+.+|.++.+|.||.|+|....
T Consensus 175 ~~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~ 234 (526)
T 2pyx_A 175 AKFSQLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSL 234 (526)
T ss_dssp HHHHHHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCC
T ss_pred HHHHHHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchH
Confidence 3466777788888 89999999 69999855455566778888778999999999998654
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00031 Score=79.38 Aligned_cols=168 Identities=20% Similarity=0.204 Sum_probs=106.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHhcC--CCeEEEEcCCCcCCcc------------------------------------c-c
Q psy2951 1205 ESNVVVIGSSFIGMEAAAFCASK--VKSVTVVGRGAVPFQE------------------------------------S-L 1245 (1466)
Q Consensus 1205 ~~~vvVvG~g~~g~e~a~~l~~~--g~~v~vv~~~~~~~~~------------------------------------~-~ 1245 (1466)
..+|+|||+|..|+.+|..|+++ |.+|+++++.+.+-.. . .
T Consensus 79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~G~~~~~~~ 158 (344)
T 3jsk_A 79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEVGVPYEDEGDYVVVKH 158 (344)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESC
T ss_pred cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchhhhcchHHHHHHHHcCCcccccCCeEEEec
Confidence 35799999999999999999997 9999999987533100 0 0
Q ss_pred cHHHHHHHHHHHHh-CCcEEEcCceEEEEEecCC----------------C--cEEEEEcC--------------CCCee
Q psy2951 1246 GKEVGERITKLFES-KGVKFVMKANVSSFEKNEK----------------N--DVTAANLD--------------NGTTI 1292 (1466)
Q Consensus 1246 ~~~~~~~l~~~~~~-~gv~~~~~~~v~~i~~~~~----------------g--~~~~v~l~--------------~g~~i 1292 (1466)
..++.+.|.+.+++ .|++++.++.++++...++ + ++.+|... +..++
T Consensus 159 ~~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i 238 (344)
T 3jsk_A 159 AALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTI 238 (344)
T ss_dssp HHHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBCEEE
T ss_pred HHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCceEE
Confidence 13344566666777 5999999999998863221 2 56666542 23478
Q ss_pred ecCEEEEeeccccCcc-----ccccCCce--eeCCCeEEeC--CC---cccc--CCCEEEecccccCCCccCCCceeeee
Q psy2951 1293 PADLVIVGIGTVLNTN-----YLDGKGVE--LNGQKAVVVN--EY---LETN--VPGVYAGGDIAYAPLHSFYNKNASIG 1358 (1466)
Q Consensus 1293 ~~D~vv~a~G~~p~~~-----~~~~~gl~--~~~~G~i~vd--~~---~~t~--~~~v~a~GD~a~~p~~~~~~~~~~~~ 1358 (1466)
.++.||.|+|.....- .+...|+. +...+....+ +. -.|. +|++|++|=.+.-- .|.+.--.
T Consensus 239 ~Ak~VV~ATG~~s~v~~~~~~~l~~~~~~~~~~g~~~~~~~~~e~~~v~~t~~v~~gl~~~gm~~~~~----~g~~rmgp 314 (344)
T 3jsk_A 239 NAPVIISTTGHDGPFGAFSVKRLVSMKQMERLNGMRGLDMQSAEDAIVNNTREIVPGLIVGGMELSEI----DGANRMGP 314 (344)
T ss_dssp ECSEEEECCCSSSSSSCHHHHHHHHTTSSSCCCCCEEECHHHHHHHHHHTCEEEETTEEECGGGHHHH----HTCEECCS
T ss_pred EcCEEEECCCCCchhhHHHHHHHhhcCcccccCCCcccccccchhhhcccCceEcCCEEEechhhHhh----cCCCCCCc
Confidence 9999999999765521 23334443 1111112111 11 1122 79999999655421 12222223
Q ss_pred cHHHHHHHHHHHHHHhcC
Q psy2951 1359 HYQLAQYHGRIAALNMVE 1376 (1466)
Q Consensus 1359 ~~~~A~~qa~~aa~~i~g 1376 (1466)
.+..-...|+.||+-++.
T Consensus 315 ~fg~m~~sg~~~a~~~~~ 332 (344)
T 3jsk_A 315 TFGAMALSGVKAAHEAIR 332 (344)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred ccceeeecCHHHHHHHHH
Confidence 456677889999987764
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00069 Score=80.47 Aligned_cols=56 Identities=18% Similarity=0.270 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeecccc
Q psy2951 1247 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVL 1305 (1466)
Q Consensus 1247 ~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p 1305 (1466)
..+...|.+.+++.|++++.+++|++++. +++.+ .|.+.+| ++.||.||+|+|...
T Consensus 153 ~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~-~~~~v-~v~t~~g-~i~a~~VV~A~G~~s 208 (397)
T 2oln_A 153 RGTLAALFTLAQAAGATLRAGETVTELVP-DADGV-SVTTDRG-TYRAGKVVLACGPYT 208 (397)
T ss_dssp HHHHHHHHHHHHHTTCEEEESCCEEEEEE-ETTEE-EEEESSC-EEEEEEEEECCGGGH
T ss_pred HHHHHHHHHHHHHcCCEEECCCEEEEEEE-cCCeE-EEEECCC-EEEcCEEEEcCCcCh
Confidence 45677788888999999999999999983 33333 4666655 799999999999753
|
| >4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0002 Score=87.93 Aligned_cols=37 Identities=14% Similarity=0.189 Sum_probs=32.8
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFL 632 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~ 632 (1466)
...||||||||+|||+||+.|+++|.+ |+++|+.+..
T Consensus 40 ~~~DVvVVGaG~AGl~AA~~aa~~G~~--V~vlEk~~~~ 76 (510)
T 4at0_A 40 YEADVVVAGYGIAGVAASIEAARAGAD--VLVLERTSGW 76 (510)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCC--EEEECSSSSS
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCc--EEEEeCCCCC
Confidence 458999999999999999999999987 8888887543
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00035 Score=82.97 Aligned_cols=101 Identities=15% Similarity=0.157 Sum_probs=76.8
Q ss_pred CeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcC------Ccc------------------------------------
Q psy2951 1206 SNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP------FQE------------------------------------ 1243 (1466)
Q Consensus 1206 ~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~------~~~------------------------------------ 1243 (1466)
.+|+|||+|..|+.+|..|++.|.+|+++++.+.+ -..
T Consensus 3 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 82 (394)
T 1k0i_A 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQ 82 (394)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTE
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEEECCc
Confidence 36999999999999999999999999999987631 000
Q ss_pred --c--------------cc-HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEc-CCCC--eeecCEEEEeecc
Q psy2951 1244 --S--------------LG-KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANL-DNGT--TIPADLVIVGIGT 1303 (1466)
Q Consensus 1244 --~--------------~~-~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l-~~g~--~i~~D~vv~a~G~ 1303 (1466)
. ++ ..+.+.|.+.+.+.|++++.+++|++++ .+++....|.+ .+|+ ++.+|+||.|.|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~-~~~~~~~~v~~~~~g~~~~~~a~~vV~AdG~ 161 (394)
T 1k0i_A 83 RRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLH-DLQGERPYVTFERDGERLRLDCDYIAGCDGF 161 (394)
T ss_dssp EEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEE-CTTSSSCEEEEEETTEEEEEECSEEEECCCT
T ss_pred eEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEE-EecCCceEEEEecCCcEEEEEeCEEEECCCC
Confidence 0 01 2345567777778899999999999998 33222234666 6887 7999999999998
Q ss_pred ccCc
Q psy2951 1304 VLNT 1307 (1466)
Q Consensus 1304 ~p~~ 1307 (1466)
....
T Consensus 162 ~S~v 165 (394)
T 1k0i_A 162 HGIS 165 (394)
T ss_dssp TCST
T ss_pred CcHH
Confidence 7664
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00029 Score=83.30 Aligned_cols=61 Identities=16% Similarity=0.169 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccCcccccc
Q psy2951 1248 EVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDG 1312 (1466)
Q Consensus 1248 ~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~~~~~~~ 1312 (1466)
.+.+.|.+.+++.|++++.+++|+++. .+++.+ .|.+.+| ++.+|.||+|+|.... .++..
T Consensus 165 ~~~~~l~~~~~~~g~~i~~~~~v~~i~-~~~~~~-~v~~~~g-~~~a~~vV~A~G~~s~-~l~~~ 225 (382)
T 1ryi_A 165 FVCKAYVKAAKMLGAEIFEHTPVLHVE-RDGEAL-FIKTPSG-DVWANHVVVASGVWSG-MFFKQ 225 (382)
T ss_dssp HHHHHHHHHHHHTTCEEETTCCCCEEE-CSSSSE-EEEETTE-EEEEEEEEECCGGGTH-HHHHH
T ss_pred HHHHHHHHHHHHCCCEEEcCCcEEEEE-EECCEE-EEEcCCc-eEEcCEEEECCChhHH-HHHHh
Confidence 455667788889999999999999998 444455 6777777 8999999999998643 34433
|
| >1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00055 Score=89.46 Aligned_cols=65 Identities=26% Similarity=0.294 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCccccccCC
Q psy2951 776 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKG 843 (1466)
Q Consensus 776 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~g 843 (1466)
..+...+.+.+++.|++++.+++|++++.. ++.+..|.+.+| ++.+|.||+|+|.... .+.+..|
T Consensus 151 ~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~-~~~v~~V~t~~G-~i~Ad~VV~AaG~~s~-~l~~~~g 215 (830)
T 1pj5_A 151 ARAVQLLIKRTESAGVTYRGSTTVTGIEQS-GGRVTGVQTADG-VIPADIVVSCAGFWGA-KIGAMIG 215 (830)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTE-EEECSEEEECCGGGHH-HHHHTTT
T ss_pred HHHHHHHHHHHHHcCCEEECCceEEEEEEe-CCEEEEEEECCc-EEECCEEEECCccchH-HHHHHhC
Confidence 467778888899999999999999999843 445556777777 7999999999998643 3444333
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00038 Score=84.26 Aligned_cols=101 Identities=21% Similarity=0.179 Sum_probs=79.0
Q ss_pred CeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCC------c------------------c------------------
Q psy2951 1206 SNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF------Q------------------E------------------ 1243 (1466)
Q Consensus 1206 ~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~------~------------------~------------------ 1243 (1466)
-+|+|||+|..|+.+|..|++.|.+|+++++.+.+. . .
T Consensus 7 ~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (453)
T 3atr_A 7 YDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYSPDMQT 86 (453)
T ss_dssp CSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEECTTSSC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEECCCCce
Confidence 479999999999999999999999999999875320 0 0
Q ss_pred ---------ccc-HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcC---CCC--eeecCEEEEeeccccCc
Q psy2951 1244 ---------SLG-KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLD---NGT--TIPADLVIVGIGTVLNT 1307 (1466)
Q Consensus 1244 ---------~~~-~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~---~g~--~i~~D~vv~a~G~~p~~ 1307 (1466)
.+. ..+.+.|.+.+++.|++++.+++|+++. .+++.+..|.+. +|+ ++.||+||.|.|.....
T Consensus 87 ~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~-~~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s~v 164 (453)
T 3atr_A 87 VWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPI-FEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSRSF 164 (453)
T ss_dssp EEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEE-EETTEEEEEEEEETTTTEEEEEECSEEEECCGGGCTT
T ss_pred EEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEE-EECCEEEEEEEEEcCCCceEEEEcCEEEECcCCchhh
Confidence 000 3466778888888999999999999998 445566556654 676 78999999999987653
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00025 Score=84.28 Aligned_cols=100 Identities=18% Similarity=0.226 Sum_probs=73.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcc-----cccHHHHH----------------------------
Q psy2951 1205 ESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQE-----SLGKEVGE---------------------------- 1251 (1466)
Q Consensus 1205 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~-----~~~~~~~~---------------------------- 1251 (1466)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+... .+.+...+
T Consensus 5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~ 84 (397)
T 2vou_A 5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTGE 84 (397)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTCC
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccccceEEEecCCCC
Confidence 468999999999999999999999999999987653111 11111111
Q ss_pred ---------------HHHHHHHh--CCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccC
Q psy2951 1252 ---------------RITKLFES--KGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLN 1306 (1466)
Q Consensus 1252 ---------------~l~~~~~~--~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~ 1306 (1466)
.+.+.+.+ .|++++.+++|++++. +++. ..|++.+|+++.+|+||.|.|....
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~-~~~~-v~v~~~~g~~~~ad~vV~AdG~~S~ 154 (397)
T 2vou_A 85 RVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQ-DSET-VQMRFSDGTKAEANWVIGADGGASV 154 (397)
T ss_dssp EEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEE-CSSC-EEEEETTSCEEEESEEEECCCTTCH
T ss_pred ccccccCcccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEe-cCCE-EEEEECCCCEEECCEEEECCCcchh
Confidence 12222222 3889999999999983 3333 4588899999999999999998765
|
| >3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00053 Score=84.84 Aligned_cols=59 Identities=20% Similarity=0.189 Sum_probs=47.5
Q ss_pred cHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCC---C--CeeecCEEEEeecccc
Q psy2951 1246 GKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDN---G--TTIPADLVIVGIGTVL 1305 (1466)
Q Consensus 1246 ~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~---g--~~i~~D~vv~a~G~~p 1305 (1466)
+..+...+.+.++++|++++.+++|+++. .+++++..|.+.| | .++.||.||+|+|...
T Consensus 169 ~~~l~~~L~~~a~~~G~~i~~~~~V~~l~-~~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s 232 (561)
T 3da1_A 169 DARLTLEIMKEAVARGAVALNYMKVESFI-YDQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWV 232 (561)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESEEEEEEE-EETTEEEEEEEEETTTCCEEEEEEEEEEECCGGGH
T ss_pred HHHHHHHHHHHHHHcCCEEEcCCEEEEEE-EcCCeEEEEEEEEcCCCceEEEECCEEEECCCcch
Confidence 45677788888899999999999999998 4556677777654 4 4789999999999653
|
| >3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0002 Score=88.65 Aligned_cols=58 Identities=21% Similarity=0.185 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCC---C--cEEecCEEEEcccccc
Q psy2951 776 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDN---G--TTIPADLVIVGIGTVL 834 (1466)
Q Consensus 776 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~---g--~~i~~D~vi~a~G~~p 834 (1466)
..+...+.+.+.+.|++++.+++|+++... ++++..+.+.+ | .++.+|.||.|+|...
T Consensus 170 ~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~-~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s 232 (561)
T 3da1_A 170 ARLTLEIMKEAVARGAVALNYMKVESFIYD-QGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWV 232 (561)
T ss_dssp HHHHHHHHHHHHHTTCEEEESEEEEEEEEE-TTEEEEEEEEETTTCCEEEEEEEEEEECCGGGH
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEc-CCeEEEEEEEEcCCCceEEEECCEEEECCCcch
Confidence 556677788888999999999999999853 45555565543 3 4789999999999753
|
| >2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00029 Score=86.36 Aligned_cols=34 Identities=24% Similarity=0.544 Sum_probs=30.9
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 630 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~ 630 (1466)
.+||+|||||++|+++|+.|+++|.+ |+++|+..
T Consensus 3 ~~DVvIIGgGi~G~~~A~~La~~G~~--V~llE~~~ 36 (501)
T 2qcu_A 3 TKDLIVIGGGINGAGIAADAAGRGLS--VLMLEAQD 36 (501)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCC--EEEECSSS
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCC--EEEEECCC
Confidence 47999999999999999999999988 88888864
|
| >2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0013 Score=81.05 Aligned_cols=59 Identities=19% Similarity=0.279 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccC
Q psy2951 776 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLN 835 (1466)
Q Consensus 776 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 835 (1466)
..+...+.+.+++.|++++.+ ++++++..+++.+..+.+.+|+++.+|.||.|+|....
T Consensus 173 ~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~ 231 (511)
T 2weu_A 173 DEVARYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRGL 231 (511)
T ss_dssp HHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGCC
T ss_pred HHHHHHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcchH
Confidence 456677788888899999999 99999865556667788888889999999999998654
|
| >2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00017 Score=91.10 Aligned_cols=36 Identities=19% Similarity=0.358 Sum_probs=31.4
Q ss_pred CCCeEEEEcCchHHHHHHHHHHH-cCCCccEEEEcCCCC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQ-NGFTGKLYFITDENF 631 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~-~g~~~~v~~~~~~~~ 631 (1466)
...+|+||||||+||++|..|++ .|.+ |+++|+.+.
T Consensus 31 ~~~dVlIVGaGpaGL~~A~~La~~~G~~--V~viEr~~~ 67 (639)
T 2dkh_A 31 SQVDVLIVGCGPAGLTLAAQLAAFPDIR--TCIVEQKEG 67 (639)
T ss_dssp SEEEEEEECCSHHHHHHHHHHTTCTTSC--EEEECSSSS
T ss_pred CCCcEEEECcCHHHHHHHHHHHHhCCCC--EEEEeCCCC
Confidence 35799999999999999999999 9987 788887643
|
| >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00083 Score=83.49 Aligned_cols=101 Identities=22% Similarity=0.308 Sum_probs=78.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcc-----------------------------------------
Q psy2951 1205 ESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQE----------------------------------------- 1243 (1466)
Q Consensus 1205 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~----------------------------------------- 1243 (1466)
..+|+|||+|..|+.+|..|++.|.+|+++++.+.+...
T Consensus 126 ~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~ 205 (572)
T 1d4d_A 126 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNIND 205 (572)
T ss_dssp ECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTGGGCCSCEECCSSSTTGGGTCCCCTHHHHHHHHHHTTTCSC
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcchhhhCCeeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCC
Confidence 568999999999999999999999999999976532100
Q ss_pred --------------------------------------c--------ccHHHHHHHHHHHHhCCcEEEcCceEEEEEecC
Q psy2951 1244 --------------------------------------S--------LGKEVGERITKLFESKGVKFVMKANVSSFEKNE 1277 (1466)
Q Consensus 1244 --------------------------------------~--------~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~ 1277 (1466)
. .+..+...|.+.+++.||+++++++++++. .+
T Consensus 206 ~~~v~~~~~~~~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~~~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~-~~ 284 (572)
T 1d4d_A 206 PELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRIL-ED 284 (572)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEE-EC
T ss_pred HHHHHHHHHccHHHHHHHHhcCCccccccccCCCcCCeeEecCCCCCCHHHHHHHHHHHHHHcCCeEEecCEEEEEE-EC
Confidence 0 012445567777888999999999999997 34
Q ss_pred C-CcEEEEEcC--CCC--eeecCEEEEeeccccC
Q psy2951 1278 K-NDVTAANLD--NGT--TIPADLVIVGIGTVLN 1306 (1466)
Q Consensus 1278 ~-g~~~~v~l~--~g~--~i~~D~vv~a~G~~p~ 1306 (1466)
+ +++.+|.+. +|+ ++.+|.||+|+|..++
T Consensus 285 ~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~~ 318 (572)
T 1d4d_A 285 ASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAK 318 (572)
T ss_dssp --CCEEEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred CCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCcc
Confidence 5 787777765 664 6899999999996553
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00015 Score=82.05 Aligned_cols=38 Identities=13% Similarity=0.218 Sum_probs=33.3
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY 634 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~ 634 (1466)
..||+|||||||||+||+.|+++|++ |+++|+.+.+++
T Consensus 2 t~dV~IIGaGpaGL~aA~~La~~G~~--V~v~Ek~~~~GG 39 (336)
T 3kkj_A 2 TVPIAIIGTGIAGLSAAQALTAAGHQ--VHLFDKSRGSGG 39 (336)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCC--EEEECSSSSSCG
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCC--EEEEECCCCCCC
Confidence 36899999999999999999999998 888888766543
|
| >3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=97.31 E-value=9e-05 Score=87.54 Aligned_cols=35 Identities=20% Similarity=0.436 Sum_probs=30.5
Q ss_pred CeEEEEcCchHHHHHHHHHHHc--CCCccEEEEcCCCCC
Q psy2951 596 DTFIVVGGGPSGATCVETLRQN--GFTGKLYFITDENFL 632 (1466)
Q Consensus 596 ~~vvVIGgG~AGl~aA~~l~~~--g~~~~v~~~~~~~~~ 632 (1466)
++|+||||||||+++|..|+++ |.+ |+++|+.+..
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~--V~v~E~~~~~ 37 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLKQARPLWA--IDIVEKNDEQ 37 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSE--EEEECSSCTT
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCC--EEEEECCCCC
Confidence 4899999999999999999999 876 8888886543
|
| >2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00039 Score=86.15 Aligned_cols=35 Identities=17% Similarity=0.378 Sum_probs=31.0
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENF 631 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~ 631 (1466)
.++|+||||||+|+++|..|+++|.+ |+++|+.+.
T Consensus 26 ~~dVlIVGaGpaGl~~A~~La~~G~~--V~vlEr~~~ 60 (549)
T 2r0c_A 26 ETDVLILGGGPVGMALALDLAHRQVG--HLVVEQTDG 60 (549)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCC--EEEECSSCS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCC--EEEEeCCCC
Confidence 47999999999999999999999987 788887643
|
| >2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0012 Score=82.26 Aligned_cols=101 Identities=18% Similarity=0.171 Sum_probs=79.6
Q ss_pred CeEEEEcCCHHHHHHHHHHhcC------CCeEEEEcCCCcCCcc------------------------------------
Q psy2951 1206 SNVVVIGSSFIGMEAAAFCASK------VKSVTVVGRGAVPFQE------------------------------------ 1243 (1466)
Q Consensus 1206 ~~vvVvG~g~~g~e~a~~l~~~------g~~v~vv~~~~~~~~~------------------------------------ 1243 (1466)
-+|+|||+|..|+.+|..|++. |.+|+|+++.+.+-..
T Consensus 36 ~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~ll~~~~~~g~~~~~~~~~~~~~ 115 (584)
T 2gmh_A 36 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRFG 115 (584)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEEEE
T ss_pred CCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHHHHHHHHhcCCceeeeechhhee
Confidence 4799999999999999999998 9999999976432100
Q ss_pred --------cc---c--------------HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcC------CC---
Q psy2951 1244 --------SL---G--------------KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLD------NG--- 1289 (1466)
Q Consensus 1244 --------~~---~--------------~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~------~g--- 1289 (1466)
.+ + ..+.++|.+.+++.||+++.+++++++...+++.+..|.+. +|
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~ 195 (584)
T 2gmh_A 116 ILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPK 195 (584)
T ss_dssp EECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEE
T ss_pred eeccCCCccccccCccccccCCCEEEeHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcc
Confidence 00 0 14566788888899999999999999984445677778776 34
Q ss_pred ------CeeecCEEEEeeccccC
Q psy2951 1290 ------TTIPADLVIVGIGTVLN 1306 (1466)
Q Consensus 1290 ------~~i~~D~vv~a~G~~p~ 1306 (1466)
.++.+|+||.|.|....
T Consensus 196 ~~~~~g~~i~Ad~VV~AdG~~S~ 218 (584)
T 2gmh_A 196 TTFERGLELHAKVTIFAEGCHGH 218 (584)
T ss_dssp EEEECCCEEECSEEEECCCTTCH
T ss_pred cccCCceEEECCEEEEeeCCCch
Confidence 68999999999998765
|
| >2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00038 Score=85.25 Aligned_cols=34 Identities=24% Similarity=0.530 Sum_probs=31.6
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCC
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 1101 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~ 1101 (1466)
+.+|+|||||++|+++|..|+++|. +|+|||+++
T Consensus 3 ~~DVvIIGgGi~G~~~A~~La~~G~--~V~llE~~~ 36 (501)
T 2qcu_A 3 TKDLIVIGGGINGAGIAADAAGRGL--SVLMLEAQD 36 (501)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCC--CEEEEECCC
Confidence 4689999999999999999999998 999999974
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00022 Score=80.68 Aligned_cols=36 Identities=14% Similarity=0.279 Sum_probs=33.3
Q ss_pred CcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy2951 1067 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP 1104 (1466)
Q Consensus 1067 ~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~ 1104 (1466)
.+|+|||||||||+||..|+++|+ +|+|||+++.++
T Consensus 3 ~dV~IIGaGpaGL~aA~~La~~G~--~V~v~Ek~~~~G 38 (336)
T 3kkj_A 3 VPIAIIGTGIAGLSAAQALTAAGH--QVHLFDKSRGSG 38 (336)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTC--CEEEECSSSSSC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCC--CEEEEECCCCCC
Confidence 579999999999999999999999 999999987654
|
| >2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00025 Score=87.85 Aligned_cols=36 Identities=22% Similarity=0.324 Sum_probs=31.1
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcC
Q psy2951 41 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITD 76 (1466)
Q Consensus 41 ~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~ 76 (1466)
+.++||+||||||+|+++|..|++.|.++.|+|...
T Consensus 24 ~~~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~ 59 (549)
T 2r0c_A 24 PIETDVLILGGGPVGMALALDLAHRQVGHLVVEQTD 59 (549)
T ss_dssp CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 345799999999999999999999999988876543
|
| >4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00048 Score=87.80 Aligned_cols=39 Identities=18% Similarity=0.457 Sum_probs=34.1
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY 634 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~ 634 (1466)
..++|+|||||++|++||+.|++.|++ |+++|+....++
T Consensus 335 ~~~~v~viG~G~~Gl~aA~~l~~~g~~--v~v~E~~~~~gg 373 (776)
T 4gut_A 335 HNKSVIIIGAGPAGLAAARQLHNFGIK--VTVLEAKDRIGG 373 (776)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCE--EEEECSSSSSCT
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCc--EEEEecccceec
Confidence 468999999999999999999999987 888888765554
|
| >2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.002 Score=79.64 Aligned_cols=56 Identities=21% Similarity=0.232 Sum_probs=45.2
Q ss_pred HHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccCc
Q psy2951 1251 ERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNT 1307 (1466)
Q Consensus 1251 ~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~~ 1307 (1466)
+.|.+.+++.|++++.+ +|+++...+++.+..|.+.+|+++.+|+||.|+|.....
T Consensus 169 ~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~~ 224 (538)
T 2aqj_A 169 DFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGLL 224 (538)
T ss_dssp HHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCCC
T ss_pred HHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchhh
Confidence 45666677789999999 899998444556677889999889999999999987653
|
| >2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00034 Score=88.29 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=30.5
Q ss_pred CCCcEEEECCchHHHHHHHHHHh-cCCCCcEEEEcC
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQ-NGFTGKLYFITD 76 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~-~g~~v~i~~~~~ 76 (1466)
.++||+||||||+|+++|..|++ .|.++.|+|...
T Consensus 31 ~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~ 66 (639)
T 2dkh_A 31 SQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKE 66 (639)
T ss_dssp SEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSS
T ss_pred CCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 35799999999999999999999 999888876443
|
| >2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0018 Score=80.36 Aligned_cols=60 Identities=10% Similarity=0.089 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEEC---CCCc--EEecCEEEEccccccC
Q psy2951 776 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANL---DNGT--TIPADLVIVGIGTVLN 835 (1466)
Q Consensus 776 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~---~~g~--~i~~D~vi~a~G~~p~ 835 (1466)
..+...+.+.+++.||+++.++.++++..++++++..+.. .+|+ .+.++.||+|+|-...
T Consensus 143 ~~l~~~L~~~~~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~~~ 207 (588)
T 2wdq_A 143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGR 207 (588)
T ss_dssp HHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCCGG
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCCcc
Confidence 5666778888888999999999999998543556655553 5565 6899999999997543
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0016 Score=77.80 Aligned_cols=100 Identities=13% Similarity=0.109 Sum_probs=71.7
Q ss_pred CeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcc------cccHHHH-----------------------------
Q psy2951 1206 SNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQE------SLGKEVG----------------------------- 1250 (1466)
Q Consensus 1206 ~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~------~~~~~~~----------------------------- 1250 (1466)
-+|+|||+|+.|+-+|..|+++|.+|+|+++.+.+-.+ .+.+...
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~~~~~~G~~i~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~ 81 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAASSILPGYGIHINSFGKQALQECLPAENWLAFEEASRYIGGQSRFY 81 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCSSCCCCEEEECHHHHHHHHHHSCHHHHHHHHHHCEEECCCCEEE
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCCCcCCCceEEeeCHHHHHHHHHcCChHHHHHhhhhhcccCcceeEe
Confidence 37999999999999999999999999999987644211 0000000
Q ss_pred ------------------------------HHHHHHHH-hCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEE
Q psy2951 1251 ------------------------------ERITKLFE-SKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIV 1299 (1466)
Q Consensus 1251 ------------------------------~~l~~~~~-~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~ 1299 (1466)
..|.+.|. ..+..++.++++++++..+++ ...|.++||+++.+|+||-
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~v~~~~~v~~~~~~~~~-~v~v~~~dG~~~~adlvVg 160 (412)
T 4hb9_A 82 NERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILNKGLANTIQWNKTFVRYEHIENG-GIKIFFADGSHENVDVLVG 160 (412)
T ss_dssp CTTSCEEEC--------------CEEEEEHHHHHHHHHTTCTTTEECSCCEEEEEECTTS-CEEEEETTSCEEEESEEEE
T ss_pred cCCcceecccCCccccccccccccceEeeHHHHHHHHHhhccceEEEEEEEEeeeEcCCC-eEEEEECCCCEEEeeEEEE
Confidence 12333332 234567889999999743444 3568999999999999999
Q ss_pred eeccccC
Q psy2951 1300 GIGTVLN 1306 (1466)
Q Consensus 1300 a~G~~p~ 1306 (1466)
|-|....
T Consensus 161 ADG~~S~ 167 (412)
T 4hb9_A 161 ADGSNSK 167 (412)
T ss_dssp CCCTTCH
T ss_pred CCCCCcc
Confidence 9997654
|
| >2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0022 Score=72.02 Aligned_cols=166 Identities=16% Similarity=0.154 Sum_probs=102.8
Q ss_pred CeEEEEcCCHHHHHHHHHHhcC--CCeEEEEcCCCcCCccc-------------------------------------cc
Q psy2951 1206 SNVVVIGSSFIGMEAAAFCASK--VKSVTVVGRGAVPFQES-------------------------------------LG 1246 (1466)
Q Consensus 1206 ~~vvVvG~g~~g~e~a~~l~~~--g~~v~vv~~~~~~~~~~-------------------------------------~~ 1246 (1466)
-+|+|||+|..|+.+|..|++. |.+|+++++.+.+-... ..
T Consensus 66 ~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~g~~~~~~~~ 145 (326)
T 2gjc_A 66 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKHA 145 (326)
T ss_dssp ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGCCCEEEETTTHHHHHHTTCCCEECSSEEEESCH
T ss_pred CCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccccCcccchhhhhhHHHHHHHhhCcccccCCCeEEEcch
Confidence 4799999999999999999998 99999999865431000 01
Q ss_pred HHHHHHHHHHHHhC-CcEEEcCceEEEEEecC--C-C--cEEEEEcC--------------CCCeeec------------
Q psy2951 1247 KEVGERITKLFESK-GVKFVMKANVSSFEKNE--K-N--DVTAANLD--------------NGTTIPA------------ 1294 (1466)
Q Consensus 1247 ~~~~~~l~~~~~~~-gv~~~~~~~v~~i~~~~--~-g--~~~~v~l~--------------~g~~i~~------------ 1294 (1466)
..+...|.+.+++. ||+++.+++++++...+ + + ++.+|.+. ++.++.|
T Consensus 146 ~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~~g~~~~~~d~~~I~A~G~~~~~~~~~~ 225 (326)
T 2gjc_A 146 ALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLS 225 (326)
T ss_dssp HHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEEHHHHTC---CCCCCCEEEEESCCCSSSCCCSS
T ss_pred HHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecceeecccccceeccCceEEEEeecccccccccc
Confidence 33445566666664 99999999999997332 3 4 77777652 3457899
Q ss_pred ---CEEEEeeccccCcc-ccccCCceeeCC----C--e--------EEeCCCccc-cCCCEEEecccccCCCccCCCcee
Q psy2951 1295 ---DLVIVGIGTVLNTN-YLDGKGVELNGQ----K--A--------VVVNEYLET-NVPGVYAGGDIAYAPLHSFYNKNA 1355 (1466)
Q Consensus 1295 ---D~vv~a~G~~p~~~-~~~~~gl~~~~~----G--~--------i~vd~~~~t-~~~~v~a~GD~a~~p~~~~~~~~~ 1355 (1466)
|+||.|+|...... ++...-..++.. | . .+|+.+-.. -+|++|++|-.+..-.. .+
T Consensus 226 ~~~~~VV~ATG~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~- 300 (326)
T 2gjc_A 226 QKHGVILSTTGHDGPFGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNMYFAGMEVAELDG----LN- 300 (326)
T ss_dssp TTCCEEEECCCCC--CCSHHHHHHHHHHSSCCCCCCCCBCHHHHHHHHHHHCEECTTSTTEEECTHHHHHHHT----CC-
T ss_pred ccCCEEEECcCCCchHHHHHHhhccccccccccCceeccccccchhheeecCCCccccCCEEECChHHHHhcC----CC-
Confidence 99999999765433 332210000100 1 0 111111221 47999999976532110 00
Q ss_pred eee-cHHHHHHHHHHHHHHhcC
Q psy2951 1356 SIG-HYQLAQYHGRIAALNMVE 1376 (1466)
Q Consensus 1356 ~~~-~~~~A~~qa~~aa~~i~g 1376 (1466)
|.+ .+..-...|+.||..|+.
T Consensus 301 r~g~~fg~m~~sg~~~a~~~~~ 322 (326)
T 2gjc_A 301 RMGPTFGAMALSGVHAAEQILK 322 (326)
T ss_dssp BCCSCCHHHHHHHHHHHHHHHH
T ss_pred CCChhhhhhhhhhHHHHHHHHH
Confidence 111 235667788899887763
|
| >2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0012 Score=77.47 Aligned_cols=55 Identities=16% Similarity=0.227 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeecccc
Q psy2951 1248 EVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVL 1305 (1466)
Q Consensus 1248 ~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p 1305 (1466)
.+.+.|.+.+++.|++++.+++|++++. +++. ..|.+.+| ++.+|.||+|+|...
T Consensus 150 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~-~~~~-~~v~~~~g-~~~a~~vV~a~G~~s 204 (372)
T 2uzz_A 150 LAIKTWIQLAKEAGCAQLFNCPVTAIRH-DDDG-VTIETADG-EYQAKKAIVCAGTWV 204 (372)
T ss_dssp HHHHHHHHHHHHTTCEEECSCCEEEEEE-CSSS-EEEEESSC-EEEEEEEEECCGGGG
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEE-cCCE-EEEEECCC-eEEcCEEEEcCCccH
Confidence 3455667777889999999999999983 3333 45777777 599999999999754
|
| >3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00016 Score=85.29 Aligned_cols=34 Identities=21% Similarity=0.469 Sum_probs=31.4
Q ss_pred cEEEECCchHHHHHHHHHHhc--CCCCcEEEEcCCCCC
Q psy2951 1068 TFIVVGGGPSGATCVETLRQN--GFTGKLYFITDENFL 1103 (1466)
Q Consensus 1068 ~vvIVG~G~aGl~aA~~L~~~--g~~~~i~li~~~~~~ 1103 (1466)
+|+|||||++|+++|..|++. |. +|+|||+.+..
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~~~G~--~V~v~E~~~~~ 37 (381)
T 3c4a_A 2 KILVIGAGPAGLVFASQLKQARPLW--AIDIVEKNDEQ 37 (381)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCTTS--EEEEECSSCTT
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCC--CEEEEECCCCC
Confidence 799999999999999999999 88 99999998654
|
| >2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0011 Score=82.51 Aligned_cols=34 Identities=26% Similarity=0.330 Sum_probs=30.3
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 630 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~ 630 (1466)
..||||||||+|||+||+.|++.|.+ |+++|+..
T Consensus 18 ~~DVvVVG~G~AGl~AAl~aa~~G~~--V~vlEK~~ 51 (621)
T 2h88_A 18 EFDAVVVGAGGAGLRAAFGLSEAGFN--TACVTKLF 51 (621)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCC--EEEEESSC
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCc--EEEEeccC
Confidence 47999999999999999999999988 77777753
|
| >2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.003 Score=70.92 Aligned_cols=101 Identities=15% Similarity=0.156 Sum_probs=73.2
Q ss_pred CcEEEECCCHhHHHHHHHHhhC--CCEEEEEeecCccccc-------------------------------------ccC
Q psy2951 183 SNVVVIGSSFIGMEAAAFCASK--VKSVTVVGRGAVPFQE-------------------------------------SLG 223 (1466)
Q Consensus 183 ~~vvVvGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~~~~-------------------------------------~~~ 223 (1466)
.+|+|||+|+.|+.+|..|++. |.+|+++++.+.+-.. ...
T Consensus 66 ~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~g~~~~~~~~ 145 (326)
T 2gjc_A 66 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKHA 145 (326)
T ss_dssp ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGCCCEEEETTTHHHHHHTTCCCEECSSEEEESCH
T ss_pred CCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccccCcccchhhhhhHHHHHHHhhCcccccCCCeEEEcch
Confidence 3799999999999999999998 9999999985433100 012
Q ss_pred HHHHHHHHHHHHhC-CcEEEcCceEEEEEecC--C-C--CeEEEEcC--------------CCcEEec------------
Q psy2951 224 KEVGERITKLFESK-GVKFVMKANVSSFEKNE--K-N--DVTAANLD--------------NGTTIPA------------ 271 (1466)
Q Consensus 224 ~~~~~~l~~~l~~~-GV~i~~~~~v~~i~~~~--~-~--~~~~v~~~--------------~g~~i~~------------ 271 (1466)
.++...+.+.+.+. |++++.++.+.++..++ + + ++..+.+. +..++.+
T Consensus 146 ~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~~g~~~~~~d~~~I~A~G~~~~~~~~~~ 225 (326)
T 2gjc_A 146 ALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLS 225 (326)
T ss_dssp HHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEEHHHHTC---CCCCCCEEEEESCCCSSSCCCSS
T ss_pred HHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecceeecccccceeccCceEEEEeecccccccccc
Confidence 34455666666664 99999999999987653 2 3 66665431 3457999
Q ss_pred ---cEEEEeeccccC
Q psy2951 272 ---DLVIVGIGTVLN 283 (1466)
Q Consensus 272 ---D~Vi~a~G~~p~ 283 (1466)
+.||.|||....
T Consensus 226 ~~~~~VV~ATG~~~~ 240 (326)
T 2gjc_A 226 QKHGVILSTTGHDGP 240 (326)
T ss_dssp TTCCEEEECCCCC--
T ss_pred ccCCEEEECcCCCch
Confidence 999999997653
|
| >4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0026 Score=77.96 Aligned_cols=58 Identities=14% Similarity=0.168 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCC---eeecC-EEEEeecccc
Q psy2951 1248 EVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGT---TIPAD-LVIVGIGTVL 1305 (1466)
Q Consensus 1248 ~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~---~i~~D-~vv~a~G~~p 1305 (1466)
.+.+.|.+.+++.||+++++++++++...+++++.+|.+.++. ++.|| .||+|+|-..
T Consensus 203 ~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~ 264 (510)
T 4at0_A 203 MLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSFA 264 (510)
T ss_dssp HHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCCCT
T ss_pred HHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCChh
Confidence 4556677778889999999999999984336788888775432 58997 9999999654
|
| >2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0037 Score=77.32 Aligned_cols=56 Identities=21% Similarity=0.232 Sum_probs=44.1
Q ss_pred HHHHHHHHhCCcEEEcCceEEEEEecCCCCeEEEEcCCCcEEeccEEEEeeccccCc
Q psy2951 228 ERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNT 284 (1466)
Q Consensus 228 ~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~ 284 (1466)
+.+.+.+++.|++++.+ +|++++.++++.+..+.+.+|+++.+|.||.|+|.....
T Consensus 169 ~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~~ 224 (538)
T 2aqj_A 169 DFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGLL 224 (538)
T ss_dssp HHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCCC
T ss_pred HHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchhh
Confidence 44556666789999999 899998755455666788888889999999999986543
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0021 Score=77.00 Aligned_cols=56 Identities=21% Similarity=0.236 Sum_probs=43.5
Q ss_pred HHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccCcccc
Q psy2951 1253 ITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYL 1310 (1466)
Q Consensus 1253 l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~~~~~ 1310 (1466)
|.+.++++|++++++++|++|. .+++++..|.++ |+++.||.||+++|......++
T Consensus 202 l~~~~~~~G~~i~~~~~V~~i~-~~~~~~~gv~~~-g~~~~ad~VV~a~~~~~~~~ll 257 (425)
T 3ka7_A 202 LETVISANGGKIHTGQEVSKIL-IENGKAAGIIAD-DRIHDADLVISNLGHAATAVLC 257 (425)
T ss_dssp HHHHHHHTTCEEECSCCEEEEE-EETTEEEEEEET-TEEEECSEEEECSCHHHHHHHT
T ss_pred HHHHHHHcCCEEEECCceeEEE-EECCEEEEEEEC-CEEEECCEEEECCCHHHHHHhc
Confidence 4556678899999999999998 455677667775 7789999999999865443333
|
| >3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0012 Score=78.57 Aligned_cols=97 Identities=16% Similarity=0.275 Sum_probs=70.6
Q ss_pred CeEEEEcCCHHHHHHHHHHhcC--CCeEEEEcCCCcC-----------C--cccc-------------------------
Q psy2951 1206 SNVVVIGSSFIGMEAAAFCASK--VKSVTVVGRGAVP-----------F--QESL------------------------- 1245 (1466)
Q Consensus 1206 ~~vvVvG~g~~g~e~a~~l~~~--g~~v~vv~~~~~~-----------~--~~~~------------------------- 1245 (1466)
.+|+|||+|.+|+-+|..|+++ |.+|+|+++.... + ...+
T Consensus 37 ~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~~~~s~~~~g~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 116 (405)
T 3c4n_A 37 FDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEEGATILAPGVWTAQDIPAGQEAQAEWTREQLLGALGSGKTL 116 (405)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSSCTTSHHHHCCCEECGGGCCTTCHHHHHHHHHHHHTGGGSSCCC
T ss_pred CCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCCCcchhccCCcceeecccCCchHHHHHHHHHHHHHHHhCCCCCC
Confidence 4799999999999999999999 9999999975311 1 0000
Q ss_pred ------------------------------------------------------cHHHHHHHHHHHHhCCcEEEcCceEE
Q psy2951 1246 ------------------------------------------------------GKEVGERITKLFESKGVKFVMKANVS 1271 (1466)
Q Consensus 1246 ------------------------------------------------------~~~~~~~l~~~~~~~gv~~~~~~~v~ 1271 (1466)
+..+...|.+.+++.|++++.+++|+
T Consensus 117 ~~~~~g~l~~~~~~~~~g~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~v~~~~l~~~L~~~~~~~Gv~i~~~~~v~ 196 (405)
T 3c4n_A 117 EVEDRPLLHLLPAGEGSGLTPTLDALADFPEALALLDPARLPVARVDPRALTYRPGSLALLAAQQAIGQGAGLLLNTRAE 196 (405)
T ss_dssp CEEECCEEEEESSCCSSSCEEHHHHTTTCHHHHTTSCTTTSCEEEEETTCEEECHHHHHHHHHHHHHTTTCEEECSCEEE
T ss_pred cEEeeCeEEehhhHhHCCCCCHHHHHHhCCCccccccCCcceEEEEcCCCEEEcHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence 01255567777888999999999999
Q ss_pred ---------EEEecCCCcEEEEEcCCCCeeecCEEEEeecccc
Q psy2951 1272 ---------SFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVL 1305 (1466)
Q Consensus 1272 ---------~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p 1305 (1466)
++. .+++.+ .|.+.+| ++.||.||+|+|...
T Consensus 197 ~~~g~~~~~~i~-~~~~~v-~v~~~~g-~i~a~~VV~A~G~~s 236 (405)
T 3c4n_A 197 LVPGGVRLHRLT-VTNTHQ-IVVHETR-QIRAGVIIVAAGAAG 236 (405)
T ss_dssp EETTEEEEECBC-C--------CBCCE-EEEEEEEEECCGGGH
T ss_pred eccccccccceE-eeCCeE-EEEECCc-EEECCEEEECCCccH
Confidence 886 334444 5767666 899999999999754
|
| >2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0015 Score=80.95 Aligned_cols=35 Identities=20% Similarity=0.401 Sum_probs=31.4
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 630 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~ 630 (1466)
..+||+|||||++|+++|+.|+++|++ |+++|+..
T Consensus 31 ~~~DVvVIGgGi~G~~~A~~La~rG~~--V~LlE~~~ 65 (571)
T 2rgh_A 31 EELDLLIIGGGITGAGVAVQAAASGIK--TGLIEMQD 65 (571)
T ss_dssp SCBSEEEECCSHHHHHHHHHHHHTTCC--EEEECSSS
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCc--EEEEeCCC
Confidence 358999999999999999999999988 88888764
|
| >3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0021 Score=80.39 Aligned_cols=34 Identities=12% Similarity=0.219 Sum_probs=30.3
Q ss_pred CCeEEEEcCchHHHHHHHHHHHc------CCCccEEEEcCCC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQN------GFTGKLYFITDEN 630 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~------g~~~~v~~~~~~~ 630 (1466)
..||||||||+|||+||+.|+++ |.+ |+++++..
T Consensus 22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~--V~vleK~~ 61 (662)
T 3gyx_A 22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEAK--ILLVDKAS 61 (662)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHHCTTCC--EEEECSSC
T ss_pred EcCEEEECCCHHHHHHHHHHHhhccccCCCCc--EEEEEecC
Confidence 57999999999999999999998 877 88888753
|
| >1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0021 Score=81.21 Aligned_cols=34 Identities=21% Similarity=0.451 Sum_probs=30.3
Q ss_pred CCeEEEEcCchHHHHHHHHHHH-----cCCCccEEEEcCCC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQ-----NGFTGKLYFITDEN 630 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~-----~g~~~~v~~~~~~~ 630 (1466)
..+|+||||||+||++|..|++ .|.+ |+++|+.+
T Consensus 8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~--v~viE~~~ 46 (665)
T 1pn0_A 8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLK--VRIIDKRS 46 (665)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHSTTCC--EEEECSSS
T ss_pred CCcEEEECcCHHHHHHHHHHhccccccCCCC--EEEEeCCC
Confidence 4799999999999999999999 9987 77888754
|
| >4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0011 Score=81.93 Aligned_cols=53 Identities=17% Similarity=0.272 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEcccc
Q psy2951 776 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGT 832 (1466)
Q Consensus 776 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 832 (1466)
..+.+.+.+.+.+.|+++++++.|++|... ++ .+.+.+|+++.+|.||.++..
T Consensus 222 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~-~~---~v~~~~G~~~~ad~vI~t~P~ 274 (513)
T 4gde_A 222 GGIWIAVANTLPKEKTRFGEKGKVTKVNAN-NK---TVTLQDGTTIGYKKLVSTMAV 274 (513)
T ss_dssp HHHHHHHHHTSCGGGEEESGGGCEEEEETT-TT---EEEETTSCEEEEEEEEECSCH
T ss_pred HHHHHHHHHHHHhcCeeeecceEEEEEEcc-CC---EEEEcCCCEEECCEEEECCCH
Confidence 345566777778889999999999999833 32 356788889999999987653
|
| >1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0055 Score=77.04 Aligned_cols=35 Identities=17% Similarity=0.429 Sum_probs=30.6
Q ss_pred CCCeEEEEcCchHHHHHHHHHH---H-cCCCccEEEEcCCC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLR---Q-NGFTGKLYFITDEN 630 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~---~-~g~~~~v~~~~~~~ 630 (1466)
...||||||||+|||+||+.|+ + .|.+ |+++|+..
T Consensus 21 ~~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~--V~vlEK~~ 59 (643)
T 1jnr_A 21 VETDILIIGGGFSGCGAAYEAAYWAKLGGLK--VTLVEKAA 59 (643)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHHTTTTCC--EEEECSSC
T ss_pred ccCCEEEECcCHHHHHHHHHHhhhhhhCCCe--EEEEeCcC
Confidence 3579999999999999999999 6 7987 88888865
|
| >2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0027 Score=73.29 Aligned_cols=40 Identities=20% Similarity=0.371 Sum_probs=34.5
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCC-CCCCC
Q psy2951 593 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE-NFLPY 634 (1466)
Q Consensus 593 ~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~-~~~~~ 634 (1466)
...++|+|||||++||+||+.|+++|++ |+++|++ ..+++
T Consensus 42 ~~~~~V~IIGAGiaGL~aA~~L~~~G~~--V~VlE~~~~~vGG 82 (376)
T 2e1m_A 42 GPPKRILIVGAGIAGLVAGDLLTRAGHD--VTILEANANRVGG 82 (376)
T ss_dssp CSCCEEEEECCBHHHHHHHHHHHHTSCE--EEEECSCSSCCBT
T ss_pred CCCceEEEECCCHHHHHHHHHHHHCCCc--EEEEeccccccCC
Confidence 4568999999999999999999999986 8888887 65544
|
| >4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0017 Score=80.14 Aligned_cols=52 Identities=15% Similarity=0.259 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeec
Q psy2951 1247 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 1302 (1466)
Q Consensus 1247 ~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G 1302 (1466)
..+.+.+.+.+++.|++++++++|++|. .+++ .+++.||+++.||.||+++.
T Consensus 222 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~-~~~~---~v~~~~G~~~~ad~vI~t~P 273 (513)
T 4gde_A 222 GGIWIAVANTLPKEKTRFGEKGKVTKVN-ANNK---TVTLQDGTTIGYKKLVSTMA 273 (513)
T ss_dssp HHHHHHHHHTSCGGGEEESGGGCEEEEE-TTTT---EEEETTSCEEEEEEEEECSC
T ss_pred HHHHHHHHHHHHhcCeeeecceEEEEEE-ccCC---EEEEcCCCEEECCEEEECCC
Confidence 4466777777888999999999999998 4443 36789999999999999755
|
| >2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0029 Score=76.26 Aligned_cols=59 Identities=14% Similarity=0.142 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEEecC-CCcEEEEEcCCCCeeecCEEEEeeccccC
Q psy2951 1247 KEVGERITKLFESKGVKFVMKANVSSFEKNE-KNDVTAANLDNGTTIPADLVIVGIGTVLN 1306 (1466)
Q Consensus 1247 ~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~-~g~~~~v~l~~g~~i~~D~vv~a~G~~p~ 1306 (1466)
..+.+.|.+.+++.|++++++++|++|.... ++++..|.+ +|+++.||.||+++|..|.
T Consensus 242 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~~~ 301 (453)
T 2bcg_G 242 GELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAPLVIADPTYFPE 301 (453)
T ss_dssp THHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TTEEEECSCEEECGGGCGG
T ss_pred HHHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CCeEEECCEEEECCCccch
Confidence 4678888899999999999999999998321 567767776 5888999999999998754
|
| >2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0035 Score=72.38 Aligned_cols=38 Identities=18% Similarity=0.372 Sum_probs=34.2
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCC-CCCC
Q psy2951 1065 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE-NFLP 1104 (1466)
Q Consensus 1065 ~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~-~~~~ 1104 (1466)
...+|+|||||++||+||..|++.|+ +|+|+|++ +..+
T Consensus 43 ~~~~V~IIGAGiaGL~aA~~L~~~G~--~V~VlE~~~~~vG 81 (376)
T 2e1m_A 43 PPKRILIVGAGIAGLVAGDLLTRAGH--DVTILEANANRVG 81 (376)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHTSC--EEEEECSCSSCCB
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCC--cEEEEeccccccC
Confidence 45789999999999999999999998 99999998 6544
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0017 Score=77.75 Aligned_cols=34 Identities=26% Similarity=0.298 Sum_probs=30.0
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcC
Q psy2951 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITD 76 (1466)
Q Consensus 43 ~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~ 76 (1466)
++||+||||||+|+++|..|++.|.+|.|++...
T Consensus 22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~ 55 (430)
T 3ihm_A 22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK 55 (430)
T ss_dssp -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 4799999999999999999999999988877543
|
| >2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0036 Score=74.94 Aligned_cols=40 Identities=18% Similarity=0.361 Sum_probs=34.9
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcC-CCccEEEEcCCCCCCCC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNG-FTGKLYFITDENFLPYD 635 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g-~~~~v~~~~~~~~~~~~ 635 (1466)
..+||+|||||++||+||+.|++.| ++ |+++|+++.+++.
T Consensus 5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~--v~v~E~~~~~GG~ 45 (424)
T 2b9w_A 5 KDSRIAIIGAGPAGLAAGMYLEQAGFHD--YTILERTDHVGGK 45 (424)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCC--EEEECSSSCSSTT
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCCc--EEEEECCCCCCCc
Confidence 4689999999999999999999999 77 8899988776543
|
| >2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0035 Score=75.55 Aligned_cols=59 Identities=14% Similarity=0.142 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhcCcEEEccceEEEEEecC-CCceEEEECCCCcEEecCEEEEccccccC
Q psy2951 776 KEVGERITKLFESKGVKFVMKANVSSFEKNE-KNDVTAANLDNGTTIPADLVIVGIGTVLN 835 (1466)
Q Consensus 776 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~-~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 835 (1466)
..+.+.+.+.+++.|+++++++.|++|.... ++++..|.+ +|+++.+|.||+++|..+.
T Consensus 242 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~~~ 301 (453)
T 2bcg_G 242 GELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAPLVIADPTYFPE 301 (453)
T ss_dssp THHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TTEEEECSCEEECGGGCGG
T ss_pred HHHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CCeEEECCEEEECCCccch
Confidence 4577778888888999999999999997432 455556665 4778999999999987654
|
| >3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0032 Score=76.79 Aligned_cols=54 Identities=19% Similarity=0.255 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEcccc
Q psy2951 777 EVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGT 832 (1466)
Q Consensus 777 ~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 832 (1466)
.+.+.+.+.+++.|+++++++.|++|+..++ ....|.+ ++.++.+|.||+|++.
T Consensus 235 ~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~-~~~~v~~-~~~~~~ad~vv~a~p~ 288 (477)
T 3nks_A 235 MLPQALETHLTSRGVSVLRGQPVCGLSLQAE-GRWKVSL-RDSSLEADHVISAIPA 288 (477)
T ss_dssp HHHHHHHHHHHHTTCEEECSCCCCEEEECGG-GCEEEEC-SSCEEEESEEEECSCH
T ss_pred HHHHHHHHHHHhcCCEEEeCCEEEEEEEcCC-ceEEEEE-CCeEEEcCEEEECCCH
Confidence 4677788888999999999999999985433 3345666 4557999999999865
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0028 Score=74.10 Aligned_cols=33 Identities=18% Similarity=0.396 Sum_probs=29.6
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEE
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFI 74 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~ 74 (1466)
.++||+|||||++|+++|+.|+++|.+|.|++.
T Consensus 5 ~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~ 37 (363)
T 1c0p_A 5 SQKRVVVLGSGVIGLSSALILARKGYSVHILAR 37 (363)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCEEEEEec
Confidence 468999999999999999999999998877654
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0032 Score=75.48 Aligned_cols=62 Identities=19% Similarity=0.220 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCcccc
Q psy2951 776 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYL 839 (1466)
Q Consensus 776 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~ 839 (1466)
..+.+.+.+.++++|+++++++.|++|... ++++..|.++ |+++.+|.||+|+|......++
T Consensus 196 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~gv~~~-g~~~~ad~VV~a~~~~~~~~ll 257 (425)
T 3ka7_A 196 KGIIDALETVISANGGKIHTGQEVSKILIE-NGKAAGIIAD-DRIHDADLVISNLGHAATAVLC 257 (425)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEET-TEEEECSEEEECSCHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCEEEECCceeEEEEE-CCEEEEEEEC-CEEEECCEEEECCCHHHHHHhc
Confidence 557788889999999999999999999853 4556556664 7789999999999876544444
|
| >1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0053 Score=77.48 Aligned_cols=35 Identities=23% Similarity=0.447 Sum_probs=31.9
Q ss_pred CCcEEEECCchHHHHHHHHHHh-----cCCCCcEEEEcCCCC
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQ-----NGFTGKLYFITDENF 1102 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~-----~g~~~~i~li~~~~~ 1102 (1466)
..+|+|||||++|+++|..|++ .|. +|+|||+.+.
T Consensus 8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi--~v~viE~~~~ 47 (665)
T 1pn0_A 8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDL--KVRIIDKRST 47 (665)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHSTTC--CEEEECSSSS
T ss_pred CCcEEEECcCHHHHHHHHHHhccccccCCC--CEEEEeCCCC
Confidence 3589999999999999999999 998 9999998754
|
| >3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.005 Score=71.75 Aligned_cols=41 Identities=17% Similarity=0.354 Sum_probs=35.5
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCC
Q psy2951 593 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD 635 (1466)
Q Consensus 593 ~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~ 635 (1466)
...+||+|||||++|+++|+.|++.|.+ |+++|+.+.+++.
T Consensus 27 ~~~~dv~IIGaG~aGl~aA~~l~~~g~~--v~v~E~~~~~GG~ 67 (397)
T 3hdq_A 27 SKGFDYLIVGAGFAGSVLAERLASSGQR--VLIVDRRPHIGGN 67 (397)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHHHTTCC--EEEECSSSSSSGG
T ss_pred CCCCCEEEECccHHHHHHHHHHHHCCCc--eEEEeccCCCCCc
Confidence 4568999999999999999999999987 8899988766543
|
| >2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0051 Score=73.61 Aligned_cols=38 Identities=18% Similarity=0.373 Sum_probs=34.4
Q ss_pred CCcEEEECCchHHHHHHHHHHhcC-CCCcEEEEcCCCCCCC
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNG-FTGKLYFITDENFLPY 1105 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g-~~~~i~li~~~~~~~~ 1105 (1466)
..+|+|||||++||+||..|++.| . +|+|+|+++.++.
T Consensus 6 ~~~v~IIGaG~aGl~aA~~L~~~g~~--~v~v~E~~~~~GG 44 (424)
T 2b9w_A 6 DSRIAIIGAGPAGLAAGMYLEQAGFH--DYTILERTDHVGG 44 (424)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHTTCC--CEEEECSSSCSST
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCC--cEEEEECCCCCCC
Confidence 468999999999999999999999 7 9999999887654
|
| >1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0035 Score=77.15 Aligned_cols=40 Identities=25% Similarity=0.370 Sum_probs=35.1
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcC-CCccEEEEcCCCCCCCCC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNG-FTGKLYFITDENFLPYDR 636 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g-~~~~v~~~~~~~~~~~~~ 636 (1466)
.++|+|||||+|||+||+.|++.| ++ |+++|+.+.+++..
T Consensus 8 ~~~VvIIGaG~aGL~AA~~L~~~G~~~--V~VlEa~~riGGr~ 48 (516)
T 1rsg_A 8 KKKVIIIGAGIAGLKAASTLHQNGIQD--CLVLEARDRVGGRL 48 (516)
T ss_dssp EEEEEEECCBHHHHHHHHHHHHTTCCS--EEEECSSSSSBTTC
T ss_pred CCcEEEECCCHHHHHHHHHHHhcCCCC--EEEEeCCCCCCCce
Confidence 479999999999999999999999 77 88999987766543
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0035 Score=74.97 Aligned_cols=34 Identities=29% Similarity=0.371 Sum_probs=31.6
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCC
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 1101 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~ 1101 (1466)
+++|+|||||++|+++|..|++.|+ +|+|||+.+
T Consensus 22 ~~~ViIVGaGpaGl~~A~~La~~G~--~V~viE~~~ 55 (430)
T 3ihm_A 22 KKRIGIVGAGTAGLHLGLFLRQHDV--DVTVYTDRK 55 (430)
T ss_dssp -CEEEEECCHHHHHHHHHHHHHTTC--EEEEEESCC
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCC--eEEEEcCCC
Confidence 3689999999999999999999999 999999986
|
| >2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0051 Score=75.20 Aligned_cols=40 Identities=20% Similarity=0.424 Sum_probs=35.0
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD 635 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~ 635 (1466)
..++|+|||||+|||+||+.|++.|++ |+++|+.+.+++.
T Consensus 10 ~~~~v~IIGaG~aGl~aA~~L~~~g~~--v~v~E~~~~~GG~ 49 (489)
T 2jae_A 10 GSHSVVVLGGGPAGLCSAFELQKAGYK--VTVLEARTRPGGR 49 (489)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHTTCE--EEEECSSSSSCTT
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCC--EEEEeccCCCCCc
Confidence 468999999999999999999999986 8899998766543
|
| >2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.022 Score=70.46 Aligned_cols=52 Identities=23% Similarity=0.244 Sum_probs=39.5
Q ss_pred HHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcC---CCC--eeecCEEEEeecccc
Q psy2951 1253 ITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLD---NGT--TIPADLVIVGIGTVL 1305 (1466)
Q Consensus 1253 l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~---~g~--~i~~D~vv~a~G~~p 1305 (1466)
+.+.++++|++++.+++|+++. .+++++..|.+. +|+ ++.||.||+|+|.-.
T Consensus 194 l~~~a~~~Ga~i~~~t~V~~l~-~~~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws 250 (571)
T 2rgh_A 194 NIKKAAEDGAYLVSKMKAVGFL-YEGDQIVGVKARDLLTDEVIEIKAKLVINTSGPWV 250 (571)
T ss_dssp HHHHHHHTTCEEESSEEEEEEE-EETTEEEEEEEEETTTCCEEEEEBSCEEECCGGGH
T ss_pred HHHHHHHcCCeEEeccEEEEEE-EeCCEEEEEEEEEcCCCCEEEEEcCEEEECCChhH
Confidence 4455678899999999999998 445566667653 343 689999999999653
|
| >1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0049 Score=72.79 Aligned_cols=38 Identities=18% Similarity=0.244 Sum_probs=34.6
Q ss_pred CCcEEEECCchHHHHHHHHHHhc-CCCCcEEEEcCCCCCCC
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQN-GFTGKLYFITDENFLPY 1105 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~-g~~~~i~li~~~~~~~~ 1105 (1466)
+.+|+|||||++|++||..|++. |. +|+|+|++++++.
T Consensus 7 ~~~v~IiGaG~~Gl~aA~~L~~~~g~--~v~v~E~~~~~GG 45 (399)
T 1v0j_A 7 RFDLFVVGSGFFGLTIAERVATQLDK--RVLVLERRPHIGG 45 (399)
T ss_dssp SCSEEEECCSHHHHHHHHHHHHHSCC--CEEEECSSSSSSG
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCC--CEEEEeCCCCCCC
Confidence 57899999999999999999998 88 9999999987664
|
| >2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.029 Score=69.60 Aligned_cols=54 Identities=11% Similarity=0.136 Sum_probs=41.1
Q ss_pred HHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEc---CCCC--eeecCEEEEeeccc
Q psy2951 1251 ERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANL---DNGT--TIPADLVIVGIGTV 1304 (1466)
Q Consensus 1251 ~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l---~~g~--~i~~D~vv~a~G~~ 1304 (1466)
..|.+.+++.||+++.++.++++...+++++.+|.. .+|+ ++.+|.||+|+|..
T Consensus 147 ~~L~~~~~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~ 205 (588)
T 2wdq_A 147 HTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGA 205 (588)
T ss_dssp HHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCC
T ss_pred HHHHHHHHhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCC
Confidence 335566677899999999999998323567777764 5665 58999999999963
|
| >1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0052 Score=72.56 Aligned_cols=41 Identities=17% Similarity=0.213 Sum_probs=35.4
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHc-CCCccEEEEcCCCCCCCCC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQN-GFTGKLYFITDENFLPYDR 636 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~-g~~~~v~~~~~~~~~~~~~ 636 (1466)
..+||+|||||++||+||+.|++. |++ |+++|+++.+++..
T Consensus 6 ~~~~v~IiGaG~~Gl~aA~~L~~~~g~~--v~v~E~~~~~GG~~ 47 (399)
T 1v0j_A 6 ARFDLFVVGSGFFGLTIAERVATQLDKR--VLVLERRPHIGGNA 47 (399)
T ss_dssp CSCSEEEECCSHHHHHHHHHHHHHSCCC--EEEECSSSSSSGGG
T ss_pred ccCCEEEECCCHHHHHHHHHHHHhCCCC--EEEEeCCCCCCCee
Confidence 358999999999999999999999 987 88999987766543
|
| >3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0058 Score=69.12 Aligned_cols=34 Identities=26% Similarity=0.368 Sum_probs=30.5
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcC
Q psy2951 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITD 76 (1466)
Q Consensus 43 ~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~ 76 (1466)
++||+|||||+||+.||..|++.|.+|.|++...
T Consensus 1 m~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~ 34 (443)
T 3g5s_A 1 MERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRP 34 (443)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred CCCEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence 3689999999999999999999999998877554
|
| >3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0033 Score=76.57 Aligned_cols=40 Identities=15% Similarity=0.263 Sum_probs=33.6
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcC----CCccEEEEcCCCCCCC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNG----FTGKLYFITDENFLPY 634 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g----~~~~v~~~~~~~~~~~ 634 (1466)
++||+|||||++||+||+.|+++| ...+|+++|+.+.+++
T Consensus 5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG 48 (470)
T 3i6d_A 5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGG 48 (470)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCT
T ss_pred CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCc
Confidence 579999999999999999999999 2234899999866554
|
| >1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0038 Score=76.77 Aligned_cols=39 Identities=26% Similarity=0.403 Sum_probs=35.0
Q ss_pred CCcEEEECCchHHHHHHHHHHhcC-CCCcEEEEcCCCCCCCC
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNG-FTGKLYFITDENFLPYD 1106 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g-~~~~i~li~~~~~~~~~ 1106 (1466)
..+|+|||||+|||+||..|++.| . +|+|+|+++.++..
T Consensus 8 ~~~VvIIGaG~aGL~AA~~L~~~G~~--~V~VlEa~~riGGr 47 (516)
T 1rsg_A 8 KKKVIIIGAGIAGLKAASTLHQNGIQ--DCLVLEARDRVGGR 47 (516)
T ss_dssp EEEEEEECCBHHHHHHHHHHHHTTCC--SEEEECSSSSSBTT
T ss_pred CCcEEEECCCHHHHHHHHHHHhcCCC--CEEEEeCCCCCCCc
Confidence 358999999999999999999999 7 99999999876654
|
| >2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0066 Score=74.21 Aligned_cols=38 Identities=24% Similarity=0.473 Sum_probs=34.8
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCC
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY 1105 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~ 1105 (1466)
..+|+|||||+|||+||..|++.|. +|+|+|+++..+.
T Consensus 11 ~~~v~IIGaG~aGl~aA~~L~~~g~--~v~v~E~~~~~GG 48 (489)
T 2jae_A 11 SHSVVVLGGGPAGLCSAFELQKAGY--KVTVLEARTRPGG 48 (489)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSSSSCT
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC--CEEEEeccCCCCC
Confidence 5689999999999999999999998 9999999987654
|
| >2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0055 Score=74.66 Aligned_cols=42 Identities=26% Similarity=0.308 Sum_probs=34.0
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCC
Q psy2951 592 SGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD 635 (1466)
Q Consensus 592 ~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~ 635 (1466)
....+||+|||||++||+||+.|+++|++ |+++|+.+.+++.
T Consensus 13 ~~~~~~v~iiG~G~~Gl~aa~~l~~~g~~--v~v~E~~~~~GGr 54 (478)
T 2ivd_A 13 RTTGMNVAVVGGGISGLAVAHHLRSRGTD--AVLLESSARLGGA 54 (478)
T ss_dssp ----CCEEEECCBHHHHHHHHHHHTTTCC--EEEECSSSSSBTT
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCC--EEEEEcCCCCCce
Confidence 34468999999999999999999999987 8889998766543
|
| >3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0067 Score=70.65 Aligned_cols=39 Identities=18% Similarity=0.375 Sum_probs=34.9
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCC
Q psy2951 1065 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY 1105 (1466)
Q Consensus 1065 ~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~ 1105 (1466)
...+|+|||||++|+++|..|++.|. +|+|+|+.++.+.
T Consensus 28 ~~~dv~IIGaG~aGl~aA~~l~~~g~--~v~v~E~~~~~GG 66 (397)
T 3hdq_A 28 KGFDYLIVGAGFAGSVLAERLASSGQ--RVLIVDRRPHIGG 66 (397)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTC--CEEEECSSSSSSG
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCC--ceEEEeccCCCCC
Confidence 35689999999999999999999998 9999999887653
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0065 Score=70.95 Aligned_cols=35 Identities=17% Similarity=0.436 Sum_probs=32.2
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCC
Q psy2951 1065 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 1101 (1466)
Q Consensus 1065 ~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~ 1101 (1466)
.+.+|+|||||++|+++|..|+++|. +|+|||++.
T Consensus 5 ~~~dVvVIG~Gi~Gls~A~~La~~G~--~V~vle~~~ 39 (363)
T 1c0p_A 5 SQKRVVVLGSGVIGLSSALILARKGY--SVHILARDL 39 (363)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCC--EEEEEeccC
Confidence 35789999999999999999999998 999999875
|
| >2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0066 Score=74.32 Aligned_cols=55 Identities=16% Similarity=0.229 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhcC-cEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEcccc
Q psy2951 776 KEVGERITKLFESKG-VKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGT 832 (1466)
Q Consensus 776 ~~~~~~~~~~l~~~g-v~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 832 (1466)
..+.+.+.+.+.+.| ++++++++|++|+..+ +. ..|.+.+|+++.+|.||+|+|.
T Consensus 255 ~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~-~~-v~v~~~~g~~~~ad~vI~a~~~ 310 (495)
T 2vvm_A 255 SAFARRFWEEAAGTGRLGYVFGCPVRSVVNER-DA-ARVTARDGREFVAKRVVCTIPL 310 (495)
T ss_dssp HHHHHHHHHHHHTTTCEEEESSCCEEEEEECS-SS-EEEEETTCCEEEEEEEEECCCG
T ss_pred HHHHHHHHHHhhhcCceEEEeCCEEEEEEEcC-CE-EEEEECCCCEEEcCEEEECCCH
Confidence 456677788888888 9999999999998543 33 3577788888999999999985
|
| >3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0036 Score=76.19 Aligned_cols=38 Identities=16% Similarity=0.315 Sum_probs=34.1
Q ss_pred CCcEEEECCchHHHHHHHHHHhcC------CCCcEEEEcCCCCCCC
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNG------FTGKLYFITDENFLPY 1105 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g------~~~~i~li~~~~~~~~ 1105 (1466)
+++|+|||||++||+||..|+++| . +|+|+|+++..+.
T Consensus 5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~--~V~vlEa~~~~GG 48 (470)
T 3i6d_A 5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPL--ELTLVEASPRVGG 48 (470)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHTTTTCSE--EEEEECSSSSSCT
T ss_pred CCcEEEECCCHHHHHHHHHHHHhccccCCCC--CEEEEECCCCCCc
Confidence 468999999999999999999998 6 9999999876653
|
| >2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... | Back alignment and structure |
|---|
Probab=95.82 E-value=0.027 Score=69.96 Aligned_cols=53 Identities=9% Similarity=0.076 Sum_probs=40.0
Q ss_pred HHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEc---CCCC--eeecCEEEEeecccc
Q psy2951 1252 RITKLFESKGVKFVMKANVSSFEKNEKNDVTAANL---DNGT--TIPADLVIVGIGTVL 1305 (1466)
Q Consensus 1252 ~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l---~~g~--~i~~D~vv~a~G~~p 1305 (1466)
.|.+.+++.||+++.++.+.++. .+++++.+|.. .+|+ .+.++.||+|+|...
T Consensus 160 ~L~~~~~~~gv~i~~~~~v~~Li-~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~ 217 (621)
T 2h88_A 160 TLYGRSLRYDTSYFVEYFALDLL-MENGECRGVIALCIEDGTIHRFRAKNTVIATGGYG 217 (621)
T ss_dssp HHHHHHTTSCCEEEETEEEEEEE-EETTEEEEEEEEETTTCCEEEEEEEEEEECCCCCG
T ss_pred HHHHHHHhCCCEEEEceEEEEEE-EECCEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence 34445566799999999999997 45667776665 4675 689999999999643
|
| >2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.039 Score=68.99 Aligned_cols=54 Identities=11% Similarity=0.074 Sum_probs=40.3
Q ss_pred HHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEc---CCCC--eeecCEEEEeecccc
Q psy2951 1251 ERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANL---DNGT--TIPADLVIVGIGTVL 1305 (1466)
Q Consensus 1251 ~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l---~~g~--~i~~D~vv~a~G~~p 1305 (1466)
..|.+.+++.||+++.++.+.++. .+++++.+|.. .+|+ .+.||.||+|+|-..
T Consensus 162 ~~L~~~a~~~gv~i~~~~~v~~L~-~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~ 220 (660)
T 2bs2_A 162 FAVANECLKLGVSIQDRKEAIALI-HQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYG 220 (660)
T ss_dssp HHHHHHHHHHTCEEECSEEEEEEE-EETTEEEEEEEEETTTCCEEEEECSEEEECCCCCG
T ss_pred HHHHHHHHhCCCEEEECcEEEEEE-ecCCEEEEEEEEECCCCcEEEEEcCEEEEccCcch
Confidence 334555567799999999999997 35567766654 5675 489999999999543
|
| >2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0079 Score=72.70 Aligned_cols=40 Identities=25% Similarity=0.468 Sum_probs=34.9
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR 636 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~ 636 (1466)
.+||+|||||++||+||+.|++.|++ |+++|+.+.+++..
T Consensus 5 ~~~v~iiG~G~~Gl~aA~~l~~~g~~--v~v~E~~~~~GG~~ 44 (453)
T 2yg5_A 5 QRDVAIVGAGPSGLAAATALRKAGLS--VAVIEARDRVGGRT 44 (453)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCC--EEEECSSSSSCTTC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCc--EEEEECCCCCCCce
Confidence 47999999999999999999999988 88999987665543
|
| >2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0073 Score=73.60 Aligned_cols=39 Identities=28% Similarity=0.349 Sum_probs=34.1
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCC
Q psy2951 1065 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY 1105 (1466)
Q Consensus 1065 ~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~ 1105 (1466)
..++|+|||||++|++||..|++.|+ +|+|+|+++.++.
T Consensus 15 ~~~~v~iiG~G~~Gl~aa~~l~~~g~--~v~v~E~~~~~GG 53 (478)
T 2ivd_A 15 TGMNVAVVGGGISGLAVAHHLRSRGT--DAVLLESSARLGG 53 (478)
T ss_dssp --CCEEEECCBHHHHHHHHHHHTTTC--CEEEECSSSSSBT
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC--CEEEEEcCCCCCc
Confidence 35689999999999999999999998 9999999987653
|
| >2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0074 Score=77.41 Aligned_cols=63 Identities=22% Similarity=0.326 Sum_probs=45.4
Q ss_pred cCcchhhhhhhhhhhcccCc----c-ccccCCCCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEc
Q psy2951 13 NDDSVVVQARKDELKNKKRK----L-PMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFIT 75 (1466)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~ 75 (1466)
.++|+.|..++++....... . +.........++|+|||||++||+||+.|++.|++|+|+|..
T Consensus 243 ~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~ 310 (852)
T 2xag_A 243 NSDTVLVHRVHSYLERHGLINFGIYKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEAR 310 (852)
T ss_dssp TSCHHHHHHHHHHHHHTTSSSCSSCBCSSCCCSSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred cCCcHHHHHHHHHHHHHHHHhcCcccccCCcccCCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEec
Confidence 47888888888776643211 1 111222345689999999999999999999999988776543
|
| >1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0076 Score=70.18 Aligned_cols=38 Identities=26% Similarity=0.482 Sum_probs=33.5
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCC
Q psy2951 596 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD 635 (1466)
Q Consensus 596 ~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~ 635 (1466)
+||+|||||++|+++|+.|++.|++ |+++|+.+.+++.
T Consensus 2 ~~v~iiG~G~~Gl~~A~~l~~~g~~--v~v~E~~~~~GG~ 39 (367)
T 1i8t_A 2 YDYIIVGSGLFGAVCANELKKLNKK--VLVIEKRNHIGGN 39 (367)
T ss_dssp EEEEEECCSHHHHHHHHHHGGGTCC--EEEECSSSSSSGG
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCc--EEEEecCCCCCcc
Confidence 6899999999999999999999987 8899988765543
|
| >2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0081 Score=73.51 Aligned_cols=56 Identities=18% Similarity=0.241 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhCC-cEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccc
Q psy2951 1247 KEVGERITKLFESKG-VKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTV 1304 (1466)
Q Consensus 1247 ~~~~~~l~~~~~~~g-v~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~ 1304 (1466)
..+.+.|.+.+++.| ++++++++|++|+. .++. ..|.+.+|+++.||.||+|+|..
T Consensus 255 ~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~-~~~~-v~v~~~~g~~~~ad~vI~a~~~~ 311 (495)
T 2vvm_A 255 SAFARRFWEEAAGTGRLGYVFGCPVRSVVN-ERDA-ARVTARDGREFVAKRVVCTIPLN 311 (495)
T ss_dssp HHHHHHHHHHHHTTTCEEEESSCCEEEEEE-CSSS-EEEEETTCCEEEEEEEEECCCGG
T ss_pred HHHHHHHHHHhhhcCceEEEeCCEEEEEEE-cCCE-EEEEECCCCEEEcCEEEECCCHH
Confidence 456777888888898 99999999999983 3333 45888889889999999999953
|
| >2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0072 Score=76.39 Aligned_cols=63 Identities=22% Similarity=0.327 Sum_probs=45.1
Q ss_pred cCcchhhhhhhhhhhcccCc----cc-cccCCCCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEc
Q psy2951 13 NDDSVVVQARKDELKNKKRK----LP-MAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFIT 75 (1466)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~ 75 (1466)
.++|+.|..++++....... .+ ..+....+.+||+|||||++|++||+.|++.|++|+|+|..
T Consensus 72 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~ 139 (662)
T 2z3y_A 72 NSDTVLVHRVHSYLERHGLINFGIYKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEAR 139 (662)
T ss_dssp GGCHHHHHHHHHHHHHTTSSSCSSCBCSSCCCSSCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSS
T ss_pred cCChHHHHHHHHHHHHHHHHhcCCccccCCCcccCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 46788888888766543211 11 11222345689999999999999999999999988776543
|
| >3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.011 Score=67.03 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=31.7
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCC
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 1101 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~ 1101 (1466)
|++|+|||||+||+.||..|++.|. +|+|||+.+
T Consensus 1 m~dViVIGgG~AG~~AA~~la~~G~--~V~liE~~~ 34 (443)
T 3g5s_A 1 MERVNVVGAGLAGSEAAWTLLRLGV--PVRLFEMRP 34 (443)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTC--CEEEECCTT
T ss_pred CCCEEEECchHHHHHHHHHHHHCCC--cEEEEeccC
Confidence 4689999999999999999999999 999999876
|
| >1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0093 Score=73.19 Aligned_cols=38 Identities=21% Similarity=0.297 Sum_probs=34.9
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCC
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY 1105 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~ 1105 (1466)
.++|+|||||++||+||..|++.|+ +|+|+|+++..+.
T Consensus 13 ~~~v~iiG~G~~Gl~aA~~l~~~g~--~v~v~E~~~~~GG 50 (504)
T 1sez_A 13 AKRVAVIGAGVSGLAAAYKLKIHGL--NVTVFEAEGKAGG 50 (504)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSC--EEEEECSSSSSCS
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCC--cEEEEEeCCCCCC
Confidence 5789999999999999999999998 9999999987654
|
| >1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0093 Score=69.43 Aligned_cols=37 Identities=30% Similarity=0.503 Sum_probs=33.5
Q ss_pred CcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCC
Q psy2951 1067 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY 1105 (1466)
Q Consensus 1067 ~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~ 1105 (1466)
.+|+|||||++|+++|..|++.|. +|+|+|++++++.
T Consensus 2 ~~v~iiG~G~~Gl~~A~~l~~~g~--~v~v~E~~~~~GG 38 (367)
T 1i8t_A 2 YDYIIVGSGLFGAVCANELKKLNK--KVLVIEKRNHIGG 38 (367)
T ss_dssp EEEEEECCSHHHHHHHHHHGGGTC--CEEEECSSSSSSG
T ss_pred CCEEEECcCHHHHHHHHHHHhCCC--cEEEEecCCCCCc
Confidence 479999999999999999999998 9999999886553
|
| >2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0096 Score=71.93 Aligned_cols=39 Identities=26% Similarity=0.469 Sum_probs=34.7
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCC
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD 1106 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~ 1106 (1466)
.++|+|||||++|++||..|++.|. +|+|+|+++..+..
T Consensus 5 ~~~v~iiG~G~~Gl~aA~~l~~~g~--~v~v~E~~~~~GG~ 43 (453)
T 2yg5_A 5 QRDVAIVGAGPSGLAAATALRKAGL--SVAVIEARDRVGGR 43 (453)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTC--CEEEECSSSSSCTT
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCC--cEEEEECCCCCCCc
Confidence 3589999999999999999999998 89999998876543
|
| >4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0079 Score=72.95 Aligned_cols=36 Identities=25% Similarity=0.398 Sum_probs=30.4
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcC-CCCcEEEEcC
Q psy2951 41 GNKDTFIVVGGGPSGATCVETLRQNG-FTGKLYFITD 76 (1466)
Q Consensus 41 ~~~~dVvIIGgG~AGl~aA~~l~~~g-~~v~i~~~~~ 76 (1466)
++++||+|||||++||+||+.|++.| .++.|+|..+
T Consensus 7 ~~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~ 43 (484)
T 4dsg_A 7 LLTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECND 43 (484)
T ss_dssp CCSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSS
T ss_pred ccCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCC
Confidence 34689999999999999999999998 6777765443
|
| >3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.011 Score=71.88 Aligned_cols=40 Identities=15% Similarity=0.178 Sum_probs=33.8
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY 634 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~ 634 (1466)
++||+|||||++||++|+.|++.|.+.+|+++|+.+..++
T Consensus 4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG 43 (475)
T 3lov_A 4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGG 43 (475)
T ss_dssp SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBT
T ss_pred cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCc
Confidence 5799999999999999999999994445899998765544
|
| >3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0098 Score=72.36 Aligned_cols=40 Identities=15% Similarity=0.178 Sum_probs=34.3
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCC
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY 1105 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~ 1105 (1466)
+++|+|||||++|+++|..|++.|.+.+|+|+|+++..+.
T Consensus 4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG 43 (475)
T 3lov_A 4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGG 43 (475)
T ss_dssp SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBT
T ss_pred cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCc
Confidence 4689999999999999999999993239999999876543
|
| >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.011 Score=72.31 Aligned_cols=41 Identities=17% Similarity=0.257 Sum_probs=35.3
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCC
Q psy2951 593 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD 635 (1466)
Q Consensus 593 ~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~ 635 (1466)
..+++|+|||||++||+||+.|+++|++ |+++|+.+.+++.
T Consensus 31 ~~~~~v~IiGaG~~Gl~aA~~l~~~g~~--v~vlE~~~~~gg~ 71 (498)
T 2iid_A 31 SNPKHVVIVGAGMAGLSAAYVLAGAGHQ--VTVLEASERPGGR 71 (498)
T ss_dssp SSCCEEEEECCBHHHHHHHHHHHHHTCE--EEEECSSSSSBTT
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhCCCe--EEEEECCCCCCCc
Confidence 3468999999999999999999999987 8889988765553
|
| >1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 | Back alignment and structure |
|---|
Probab=95.38 E-value=0.011 Score=72.54 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=34.7
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD 635 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~ 635 (1466)
..++|+|||||++||+||+.|+++|++ |+++|+.+.+++.
T Consensus 12 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~--v~v~E~~~~~GG~ 51 (504)
T 1sez_A 12 SAKRVAVIGAGVSGLAAAYKLKIHGLN--VTVFEAEGKAGGK 51 (504)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHTTSCE--EEEECSSSSSCSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCc--EEEEEeCCCCCCc
Confidence 358999999999999999999999987 8899998776553
|
| >4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.013 Score=70.90 Aligned_cols=40 Identities=15% Similarity=0.192 Sum_probs=34.1
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcC-CCccEEEEcCCCCCCCC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNG-FTGKLYFITDENFLPYD 635 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g-~~~~v~~~~~~~~~~~~ 635 (1466)
..++|+|||||++||++|+.|+++| .+ |+++|+.+.+++.
T Consensus 8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~~--v~v~E~~~~~GG~ 48 (484)
T 4dsg_A 8 LTPKIVIIGAGPTGLGAAVRLTELGYKN--WHLYECNDTPGGL 48 (484)
T ss_dssp CSCCEEEECCSHHHHHHHHHHHHTTCCS--EEEEESSSSSSGG
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCC--EEEEeCCCCCCCe
Confidence 4689999999999999999999998 56 8888888765543
|
| >2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.013 Score=68.54 Aligned_cols=36 Identities=25% Similarity=0.474 Sum_probs=33.4
Q ss_pred CcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy2951 1067 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP 1104 (1466)
Q Consensus 1067 ~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~ 1104 (1466)
.+|+|||||++|+++|..|++.|. +|+|+|++++.+
T Consensus 4 ~~v~iiG~G~~Gl~~A~~l~~~g~--~v~v~E~~~~~G 39 (384)
T 2bi7_A 4 KKILIVGAGFSGAVIGRQLAEKGH--QVHIIDQRDHIG 39 (384)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTC--EEEEEESSSSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCC--cEEEEEecCCcC
Confidence 589999999999999999999988 999999988765
|
| >3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.0087 Score=69.47 Aligned_cols=35 Identities=14% Similarity=0.169 Sum_probs=29.9
Q ss_pred CeEEEEcCchHHHHHHHHHHHcC----CCccEEEEcCCC
Q psy2951 596 DTFIVVGGGPSGATCVETLRQNG----FTGKLYFITDEN 630 (1466)
Q Consensus 596 ~~vvVIGgG~AGl~aA~~l~~~g----~~~~v~~~~~~~ 630 (1466)
+||+|||||++|+++|+.|+++| ...+|+++|+..
T Consensus 1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~ 39 (351)
T 3g3e_A 1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF 39 (351)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence 58999999999999999999998 223488888874
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.023 Score=67.84 Aligned_cols=127 Identities=16% Similarity=0.138 Sum_probs=77.2
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcccCcccccccCHhHhhhCCcEEEEceEEEEe
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISD 674 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i 674 (1466)
.++|+|||.|.+||++|+.|+++|++ |+..+.....+. ...++ .|+++..+... .
T Consensus 5 ~~~v~viG~G~~G~~~a~~l~~~G~~--v~~~D~~~~~~~--------------------~~~l~-~G~~~~~g~~~--~ 59 (439)
T 2x5o_A 5 GKNVVIIGLGLTGLSCVDFFLARGVT--PRVMDTRMTPPG--------------------LDKLP-EAVERHTGSLN--D 59 (439)
T ss_dssp TCCEEEECCHHHHHHHHHHHHTTTCC--CEEEESSSSCTT--------------------GGGSC-TTSCEEESSCC--H
T ss_pred CCEEEEEeecHHHHHHHHHHHhCCCE--EEEEECCCCcch--------------------hHHhh-CCCEEEECCCc--H
Confidence 47899999999999999999999998 555555432110 02345 68887766511 0
Q ss_pred ccccccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCC--CcEEEecCHHHHHhhcccCCCCCcEEEECCC---hHHHHH
Q psy2951 675 SELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGV--NKVFYLRTVEDANNIAPHITPESNVVVIGSS---FIGMEA 749 (1466)
Q Consensus 675 ~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G---~~g~e~ 749 (1466)
+ . + . .+|.||+++|..+..|.+. .. ++...+...+-+.+. . +.+.|.|-|+. -+.--+
T Consensus 60 ---~--~--~----~-~~d~vV~s~gi~~~~p~~~-~a~~~~~~v~~~~~~~~~~---~-~~~vI~VTGTnGKTTT~~ml 122 (439)
T 2x5o_A 60 ---E--W--L----M-AADLIVASPGIALAHPSLS-AAADAGIEIVGDIELFCRE---A-QAPIVAITGSNGKSTVTTLV 122 (439)
T ss_dssp ---H--H--H----H-TCSEEEECTTSCTTCHHHH-HHHHTTCEEECHHHHHHHH---C-CSCEEEEECSSSHHHHHHHH
T ss_pred ---H--H--h----c-cCCEEEeCCCCCCCCHHHH-HHHHCCCcEEEHHHHHHHh---c-CCCEEEEECCCCHHHHHHHH
Confidence 0 0 0 1 4789999999877655544 21 123333333333222 2 25566676643 344456
Q ss_pred HHHHhccCCeEEEE
Q psy2951 750 AAFCASKVKSVTVV 763 (1466)
Q Consensus 750 A~~l~~~g~~V~lv 763 (1466)
+..|...|.++.+.
T Consensus 123 ~~iL~~~g~~~~~~ 136 (439)
T 2x5o_A 123 GEMAKAAGVNVGVG 136 (439)
T ss_dssp HHHHHHTTCCEEEE
T ss_pred HHHHHhcCCCEEEe
Confidence 66777778776644
|
| >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.014 Score=71.54 Aligned_cols=39 Identities=18% Similarity=0.282 Sum_probs=35.1
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCC
Q psy2951 1065 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY 1105 (1466)
Q Consensus 1065 ~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~ 1105 (1466)
..++|+|||||++|++||..|++.|. +|+|+|+++..+.
T Consensus 32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~--~v~vlE~~~~~gg 70 (498)
T 2iid_A 32 NPKHVVIVGAGMAGLSAAYVLAGAGH--QVTVLEASERPGG 70 (498)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHHTC--EEEEECSSSSSBT
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCC--eEEEEECCCCCCC
Confidence 35689999999999999999999998 9999999887654
|
| >2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.014 Score=68.35 Aligned_cols=38 Identities=24% Similarity=0.402 Sum_probs=33.3
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY 634 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~ 634 (1466)
.++|+|||||++|+++|+.|++.|++ |+++|+++.+++
T Consensus 3 ~~~v~iiG~G~~Gl~~A~~l~~~g~~--v~v~E~~~~~GG 40 (384)
T 2bi7_A 3 SKKILIVGAGFSGAVIGRQLAEKGHQ--VHIIDQRDHIGG 40 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCE--EEEEESSSSSSG
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCc--EEEEEecCCcCC
Confidence 37999999999999999999999976 888888876654
|
| >2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A | Back alignment and structure |
|---|
Probab=95.10 E-value=0.019 Score=73.62 Aligned_cols=41 Identities=17% Similarity=0.340 Sum_probs=35.8
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCC
Q psy2951 593 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD 635 (1466)
Q Consensus 593 ~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~ 635 (1466)
...++|+|||||++||+||+.|+++|++ |+++|+...+++.
T Consensus 276 ~~~~~v~viG~G~aGl~~A~~l~~~g~~--v~v~E~~~~~GG~ 316 (852)
T 2xag_A 276 KKTGKVIIIGSGVSGLAAARQLQSFGMD--VTLLEARDRVGGR 316 (852)
T ss_dssp SCCCEEEEECCSHHHHHHHHHHHHTTCE--EEEECSSSSSCTT
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCc--EEEEEecCcCCCc
Confidence 4568999999999999999999999987 8899988766654
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.023 Score=67.93 Aligned_cols=131 Identities=19% Similarity=0.150 Sum_probs=77.6
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcccCcccccccCHhHhhhCCcEEEEceEEEE
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIIS 673 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~ 673 (1466)
..++|+|||.|.+|+++|+.|+++|++ |+..+.... . .....+.+++.|++++.+..
T Consensus 8 ~~k~v~viG~G~sG~s~A~~l~~~G~~--V~~~D~~~~---~---------------~~~~~~~L~~~gi~~~~g~~--- 64 (451)
T 3lk7_A 8 ENKKVLVLGLARSGEAAARLLAKLGAI--VTVNDGKPF---D---------------ENPTAQSLLEEGIKVVCGSH--- 64 (451)
T ss_dssp TTCEEEEECCTTTHHHHHHHHHHTTCE--EEEEESSCG---G---------------GCHHHHHHHHTTCEEEESCC---
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCE--EEEEeCCcc---c---------------CChHHHHHHhCCCEEEECCC---
Confidence 368999999999999999999999988 666665431 0 01123456778999888762
Q ss_pred eccccccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCC--cEEEecCHHHHHhhcccCCCCCcEEEECC-Ch--HHHH
Q psy2951 674 DSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGS-SF--IGME 748 (1466)
Q Consensus 674 i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~vvVvG~-G~--~g~e 748 (1466)
..+. . ++ .+|.||+++|..+..|.+. -.. ++..+...+-+..+. +.+-|.|-|+ |- +.--
T Consensus 65 ---~~~~---~-~~---~~d~vv~spgi~~~~p~~~-~a~~~gi~v~~~~e~~~~~~----~~~~IaVTGTnGKTTTt~m 129 (451)
T 3lk7_A 65 ---PLEL---L-DE---DFCYMIKNPGIPYNNPMVK-KALEKQIPVLTEVELAYLVS----ESQLIGITGSNGKTTTTTM 129 (451)
T ss_dssp ---CGGG---G-GS---CEEEEEECTTSCTTSHHHH-HHHHTTCCEECHHHHHHHHC----CSEEEEEECSSCHHHHHHH
T ss_pred ---hHHh---h-cC---CCCEEEECCcCCCCChhHH-HHHHCCCcEEeHHHHHHHhc----CCCEEEEECCCCHHHHHHH
Confidence 1100 0 00 2899999999877666432 100 222233333222221 2345555554 32 3344
Q ss_pred HHHHHhccCCeEEE
Q psy2951 749 AAAFCASKVKSVTV 762 (1466)
Q Consensus 749 ~A~~l~~~g~~V~l 762 (1466)
++..|...|.++.+
T Consensus 130 l~~iL~~~g~~~~~ 143 (451)
T 3lk7_A 130 IAEVLNAGGQRGLL 143 (451)
T ss_dssp HHHHHHHTTCCEEE
T ss_pred HHHHHHhcCCCEEE
Confidence 55667777776644
|
| >3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* | Back alignment and structure |
|---|
Probab=95.09 E-value=0.011 Score=68.58 Aligned_cols=34 Identities=15% Similarity=0.203 Sum_probs=30.2
Q ss_pred cEEEECCchHHHHHHHHHHhcC----CCCcEEEEcCCC
Q psy2951 1068 TFIVVGGGPSGATCVETLRQNG----FTGKLYFITDEN 1101 (1466)
Q Consensus 1068 ~vvIVG~G~aGl~aA~~L~~~g----~~~~i~li~~~~ 1101 (1466)
+|+|||||++|+++|..|+++| ...+|+|||++.
T Consensus 2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~ 39 (351)
T 3g3e_A 2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF 39 (351)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence 7999999999999999999998 223999999875
|
| >3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} | Back alignment and structure |
|---|
Probab=95.08 E-value=0.01 Score=74.27 Aligned_cols=58 Identities=9% Similarity=0.125 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhC--CcEEEcCceEEEEEecCC--CCeEEEEc---CCCc--EEeccEEEEeecccc
Q psy2951 225 EVGERITKLFESK--GVKFVMKANVSSFEKNEK--NDVTAANL---DNGT--TIPADLVIVGIGTVL 282 (1466)
Q Consensus 225 ~~~~~l~~~l~~~--GV~i~~~~~v~~i~~~~~--~~~~~v~~---~~g~--~i~~D~Vi~a~G~~p 282 (1466)
.+...+.+.+++. ||+++.++.+.++..+++ +++..+.. .+|+ .+.++.||+|||--.
T Consensus 167 ~i~~~L~~~a~~~~~gV~i~~~~~v~dLi~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVLATGG~g 233 (662)
T 3gyx_A 167 SYKVIVAEAAKNALGQDRIIERIFIVKLLLDKNTPNRIAGAVGFNLRANEVHIFKANAMVVACGGAV 233 (662)
T ss_dssp SHHHHHHHHHHHHHCTTTEECSEEECCCEECSSSTTBEEEEEEEESSSSCEEEEECSEEEECCCCBC
T ss_pred HHHHHHHHHHHhcCCCcEEEEceEEEEEEEeCCccceEEEEEEEEcCCCcEEEEEeCEEEECCCccc
Confidence 4455566666666 888888888888765443 25655532 3443 578888999888544
|
| >2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A | Back alignment and structure |
|---|
Probab=95.05 E-value=0.018 Score=72.68 Aligned_cols=42 Identities=17% Similarity=0.344 Sum_probs=35.9
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCC
Q psy2951 592 SGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD 635 (1466)
Q Consensus 592 ~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~ 635 (1466)
....++|+|||||++||+||+.|++.|++ |+++|+.+.+++.
T Consensus 104 ~~~~~~v~viG~G~~gl~~a~~l~~~g~~--v~~~e~~~~~gg~ 145 (662)
T 2z3y_A 104 TKKTGKVIIIGSGVSGLAAARQLQSFGMD--VTLLEARDRVGGR 145 (662)
T ss_dssp SSCCCEEEEECCBHHHHHHHHHHHHTTCE--EEEECSSSSSBTT
T ss_pred ccCCCeEEEECcCHHHHHHHHHHHHCCCe--EEEEecCCCCCCc
Confidence 34578999999999999999999999987 8888988765543
|
| >1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A | Back alignment and structure |
|---|
Probab=95.01 E-value=0.021 Score=68.08 Aligned_cols=58 Identities=16% Similarity=0.224 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccC
Q psy2951 1247 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLN 1306 (1466)
Q Consensus 1247 ~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~ 1306 (1466)
..+.+.|.+.+++.|++++++++|++|. .+++++..|. .+|+++.||.||+++|..+.
T Consensus 234 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~-~~~~~v~~v~-~~g~~~~ad~VV~a~~~~~~ 291 (433)
T 1d5t_A 234 GELPQGFARLSAIYGGTYMLNKPVDDII-MENGKVVGVK-SEGEVARCKQLICDPSYVPD 291 (433)
T ss_dssp THHHHHHHHHHHHHTCCCBCSCCCCEEE-EETTEEEEEE-ETTEEEECSEEEECGGGCGG
T ss_pred HHHHHHHHHHHHHcCCEEECCCEEEEEE-EeCCEEEEEE-ECCeEEECCEEEECCCCCcc
Confidence 4677888888999999999999999998 4556666566 47888999999999998764
|
| >2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* | Back alignment and structure |
|---|
Probab=94.97 E-value=0.0081 Score=75.21 Aligned_cols=58 Identities=12% Similarity=0.072 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCCeEEEE---cCCCc--EEeccEEEEeecccc
Q psy2951 224 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAAN---LDNGT--TIPADLVIVGIGTVL 282 (1466)
Q Consensus 224 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~v~---~~~g~--~i~~D~Vi~a~G~~p 282 (1466)
..+...|.+.+.+.||++++++.+.++..++ +++..+. +.+|+ .+.++.||+|||--.
T Consensus 158 ~~l~~~L~~~a~~~gv~i~~~~~v~~L~~~~-g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~ 220 (660)
T 2bs2_A 158 HTMLFAVANECLKLGVSIQDRKEAIALIHQD-GKCYGAVVRDLVTGDIIAYVAKGTLIATGGYG 220 (660)
T ss_dssp HHHHHHHHHHHHHHTCEEECSEEEEEEEEET-TEEEEEEEEETTTCCEEEEECSEEEECCCCCG
T ss_pred HHHHHHHHHHHHhCCCEEEECcEEEEEEecC-CEEEEEEEEECCCCcEEEEEcCEEEEccCcch
Confidence 4566677777777899999999999886532 4554443 24565 488999999998643
|
| >1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A | Back alignment and structure |
|---|
Probab=94.78 E-value=0.027 Score=67.14 Aligned_cols=58 Identities=14% Similarity=0.213 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccC
Q psy2951 776 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLN 835 (1466)
Q Consensus 776 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 835 (1466)
..+.+.+.+.+++.|+++++++.|++|... ++++..+. .+|+++.+|.||+++|..+.
T Consensus 234 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~-~~~v~~v~-~~g~~~~ad~VV~a~~~~~~ 291 (433)
T 1d5t_A 234 GELPQGFARLSAIYGGTYMLNKPVDDIIME-NGKVVGVK-SEGEVARCKQLICDPSYVPD 291 (433)
T ss_dssp THHHHHHHHHHHHHTCCCBCSCCCCEEEEE-TTEEEEEE-ETTEEEECSEEEECGGGCGG
T ss_pred HHHHHHHHHHHHHcCCEEECCCEEEEEEEe-CCEEEEEE-ECCeEEECCEEEECCCCCcc
Confidence 467778888888999999999999999843 45555555 47788999999999998764
|
| >3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=94.67 E-value=0.024 Score=67.41 Aligned_cols=58 Identities=22% Similarity=0.333 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccc
Q psy2951 776 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTV 833 (1466)
Q Consensus 776 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 833 (1466)
.++.+.+.+.+++.|+++++++.|++|..++++++..|.+.+|+++.||.||.++++.
T Consensus 256 ~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~~ 313 (475)
T 3p1w_A 256 GGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYV 313 (475)
T ss_dssp THHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGGC
T ss_pred HHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCcc
Confidence 5677888899999999999999999998545677888999999999999999999987
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=94.32 E-value=0.07 Score=60.64 Aligned_cols=80 Identities=10% Similarity=0.083 Sum_probs=55.2
Q ss_pred CCCeEEEEcCchHHHH-HHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcccCcccccccCHhHhhhCCcEEEEceEEE
Q psy2951 594 NKDTFIVVGGGPSGAT-CVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKII 672 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~-aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~ 672 (1466)
.+++|.|||.|.+||+ +|..|+++|++ |+..|..... ...+.+++.|++++.+.
T Consensus 3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~~--V~~~D~~~~~--------------------~~~~~L~~~gi~v~~g~--- 57 (326)
T 3eag_A 3 AMKHIHIIGIGGTFMGGLAAIAKEAGFE--VSGCDAKMYP--------------------PMSTQLEALGIDVYEGF--- 57 (326)
T ss_dssp CCCEEEEESCCSHHHHHHHHHHHHTTCE--EEEEESSCCT--------------------THHHHHHHTTCEEEESC---
T ss_pred CCcEEEEEEECHHHHHHHHHHHHhCCCE--EEEEcCCCCc--------------------HHHHHHHhCCCEEECCC---
Confidence 4689999999999997 78999999998 6666654320 01234667799988765
Q ss_pred EeccccccEEEccCCCEEecCEEEEcCCCCCCcCCC
Q psy2951 673 SDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQ 708 (1466)
Q Consensus 673 ~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~ 708 (1466)
+... +.. ..+|.||+++|..+..|.+
T Consensus 58 ---~~~~----l~~---~~~d~vV~Spgi~~~~p~~ 83 (326)
T 3eag_A 58 ---DAAQ----LDE---FKADVYVIGNVAKRGMDVV 83 (326)
T ss_dssp ---CGGG----GGS---CCCSEEEECTTCCTTCHHH
T ss_pred ---CHHH----cCC---CCCCEEEECCCcCCCCHHH
Confidence 2111 000 2489999999987766543
|
| >1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A* | Back alignment and structure |
|---|
Probab=94.31 E-value=0.015 Score=73.08 Aligned_cols=59 Identities=17% Similarity=0.162 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhC-Cc-EEEcCceEEEEEecCC--CCeEEEE---cCCCc--EEeccEEEEeeccccC
Q psy2951 225 EVGERITKLFESK-GV-KFVMKANVSSFEKNEK--NDVTAAN---LDNGT--TIPADLVIVGIGTVLN 283 (1466)
Q Consensus 225 ~~~~~l~~~l~~~-GV-~i~~~~~v~~i~~~~~--~~~~~v~---~~~g~--~i~~D~Vi~a~G~~p~ 283 (1466)
.+...+.+.+++. || ++++++.+.++..+++ +++..+. ..+|+ .+.++.||+|||--..
T Consensus 152 ~~~~~l~~~~~~~~gv~~i~~~~~v~~L~~~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG~~~ 219 (643)
T 1jnr_A 152 SYKPIIAEAAKMAVGEENIYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGATL 219 (643)
T ss_dssp THHHHHHHHHHHHHCGGGEECSEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCCBCS
T ss_pred HHHHHHHHHHHhcCCCcEEEecCEEEEEEEcCCccceeEEEEEEEecCCcEEEEEcCEEEECCCcccc
Confidence 3455566666776 99 9999999999976543 2666554 25564 6899999999996543
|
| >1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* | Back alignment and structure |
|---|
Probab=94.15 E-value=0.038 Score=66.95 Aligned_cols=39 Identities=26% Similarity=0.416 Sum_probs=32.7
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCC-CccEEEEcCCCCCCC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGF-TGKLYFITDENFLPY 634 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~-~~~v~~~~~~~~~~~ 634 (1466)
..++|+|||||++|+++|+.|++.|+ + |+++|+.+.+++
T Consensus 3 ~~~~~~iiG~G~~g~~~a~~l~~~g~~~--v~~~e~~~~~gg 42 (472)
T 1b37_A 3 VGPRVIVVGAGMSGISAAKRLSEAGITD--LLILEATDHIGG 42 (472)
T ss_dssp --CCEEEECCBHHHHHHHHHHHHTTCCC--EEEECSSSSSBT
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCCc--eEEEeCCCCCCC
Confidence 35799999999999999999999997 6 888898866544
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=94.01 E-value=0.048 Score=65.01 Aligned_cols=128 Identities=16% Similarity=0.152 Sum_probs=80.4
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhccCcccccccChhhhccCCcEEEcCCeEEEe
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISD 1145 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i 1145 (1466)
.++|+|||.|.+|+++|..|.++|+ +|+++|.....|.. .+++ .|+++..+... .
T Consensus 5 ~~~v~viG~G~~G~~~a~~l~~~G~--~v~~~D~~~~~~~~--------------------~~l~-~G~~~~~g~~~--~ 59 (439)
T 2x5o_A 5 GKNVVIIGLGLTGLSCVDFFLARGV--TPRVMDTRMTPPGL--------------------DKLP-EAVERHTGSLN--D 59 (439)
T ss_dssp TCCEEEECCHHHHHHHHHHHHTTTC--CCEEEESSSSCTTG--------------------GGSC-TTSCEEESSCC--H
T ss_pred CCEEEEEeecHHHHHHHHHHHhCCC--EEEEEECCCCcchh--------------------HHhh-CCCEEEECCCc--H
Confidence 3679999999999999999999999 99999886643211 2234 57777655411 0
Q ss_pred ecCCCCeEEecCCcEEecCeEEEecCCCCCcCCCCCCC--CcEEEecCHHHHHhhhcccCCCCeEEEEcCC---HHHHHH
Q psy2951 1146 SELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGV--NKVFYLRTVEDANNIAPHITPESNVVVIGSS---FIGMEA 1220 (1466)
Q Consensus 1146 ~d~~~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~--~~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g---~~g~e~ 1220 (1466)
+ . + . .+|.+|+++|..+..|.+. .. +++..+...+-+.++ .+ .+.|.|-|.. -+..-+
T Consensus 60 -~----~--~----~-~~d~vV~s~gi~~~~p~~~-~a~~~~~~v~~~~~~~~~~---~~-~~vI~VTGTnGKTTT~~ml 122 (439)
T 2x5o_A 60 -E----W--L----M-AADLIVASPGIALAHPSLS-AAADAGIEIVGDIELFCRE---AQ-APIVAITGSNGKSTVTTLV 122 (439)
T ss_dssp -H----H--H----H-TCSEEEECTTSCTTCHHHH-HHHHTTCEEECHHHHHHHH---CC-SCEEEEECSSSHHHHHHHH
T ss_pred -H----H--h----c-cCCEEEeCCCCCCCCHHHH-HHHHCCCcEEEHHHHHHHh---cC-CCEEEEECCCCHHHHHHHH
Confidence 0 0 0 1 4789999999876554433 21 144455444443332 32 5566666642 345556
Q ss_pred HHHHhcCCCeEEEEc
Q psy2951 1221 AAFCASKVKSVTVVG 1235 (1466)
Q Consensus 1221 a~~l~~~g~~v~vv~ 1235 (1466)
+..|+..|.++.+..
T Consensus 123 ~~iL~~~g~~~~~~g 137 (439)
T 2x5o_A 123 GEMAKAAGVNVGVGG 137 (439)
T ss_dssp HHHHHHTTCCEEEEE
T ss_pred HHHHHhcCCCEEEec
Confidence 667777788766544
|
| >4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A* | Back alignment and structure |
|---|
Probab=93.98 E-value=0.036 Score=70.60 Aligned_cols=38 Identities=21% Similarity=0.486 Sum_probs=34.2
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCC
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY 1105 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~ 1105 (1466)
..+|+|||||++|++||..|++.|. +|+|+|+.+..+.
T Consensus 336 ~~~v~viG~G~~Gl~aA~~l~~~g~--~v~v~E~~~~~gg 373 (776)
T 4gut_A 336 NKSVIIIGAGPAGLAAARQLHNFGI--KVTVLEAKDRIGG 373 (776)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTC--EEEEECSSSSSCT
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCC--cEEEEecccceec
Confidence 4789999999999999999999999 9999999876553
|
| >1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* | Back alignment and structure |
|---|
Probab=93.59 E-value=0.032 Score=68.92 Aligned_cols=63 Identities=19% Similarity=0.312 Sum_probs=43.9
Q ss_pred HHHHHHHhCCcEEEcCceEEEEEecCCCCeEEEEcCC---Cc--EE---eccEEEEeeccccCccccccCCc
Q psy2951 229 RITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDN---GT--TI---PADLVIVGIGTVLNTNYLDGKGV 292 (1466)
Q Consensus 229 ~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~~~---g~--~i---~~D~Vi~a~G~~p~~~~l~~~gl 292 (1466)
.+....++.|+++++++.|++|..++ +++..|.+.+ |+ ++ .++.||+|+|.-....++...|+
T Consensus 201 ~l~~~~~~~~~~i~~~~~V~~i~~~~-~~~~gV~~~~~~~g~~~~~~v~~~~~VIlaaG~~~sp~lL~~sGi 271 (546)
T 1kdg_A 201 YLQTALARPNFTFKTNVMVSNVVRNG-SQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGI 271 (546)
T ss_dssp HHHHHHTCTTEEEECSCCEEEEEEET-TEEEEEEESCTTSSGGGEEEEEEEEEEEECSHHHHHHHHHHHTTB
T ss_pred HHHHHhhCCCcEEEeCCEEEEEEEeC-CEEEEEEEEecCCCceeEEEEEeCCEEEEcCChhcCHHHHHHcCC
Confidence 44444445699999999999998653 4677776644 53 34 78999999998655555554443
|
| >1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* | Back alignment and structure |
|---|
Probab=93.34 E-value=0.057 Score=66.62 Aligned_cols=63 Identities=19% Similarity=0.310 Sum_probs=44.7
Q ss_pred HHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCC---Cc--EE---ecCEEEEccccccCccccccCCc
Q psy2951 781 RITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDN---GT--TI---PADLVIVGIGTVLNTNYLDGKGV 844 (1466)
Q Consensus 781 ~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~---g~--~i---~~D~vi~a~G~~p~~~~~~~~gl 844 (1466)
++....+..|+++++++.|++|..+ ++++..|++.+ |+ ++ .++.||+|+|......++..+|+
T Consensus 201 ~l~~~~~~~~~~i~~~~~V~~i~~~-~~~~~gV~~~~~~~g~~~~~~v~~~~~VIlaaG~~~sp~lL~~sGi 271 (546)
T 1kdg_A 201 YLQTALARPNFTFKTNVMVSNVVRN-GSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGI 271 (546)
T ss_dssp HHHHHHTCTTEEEECSCCEEEEEEE-TTEEEEEEESCTTSSGGGEEEEEEEEEEEECSHHHHHHHHHHHTTB
T ss_pred HHHHHhhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEecCCCceeEEEEEeCCEEEEcCChhcCHHHHHHcCC
Confidence 4444444469999999999999843 45677777754 54 34 78999999998766566655444
|
| >3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* | Back alignment and structure |
|---|
Probab=93.31 E-value=0.033 Score=69.32 Aligned_cols=36 Identities=17% Similarity=0.329 Sum_probs=32.5
Q ss_pred CCcEEEECCchHHHHHHHHHHhcC--------CCCcEEEEcCCC-CC
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNG--------FTGKLYFITDEN-FL 1103 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g--------~~~~i~li~~~~-~~ 1103 (1466)
.++|+|||||++||+||..|++.| + +|+|+|+++ .+
T Consensus 56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~--~V~v~E~~~~r~ 100 (721)
T 3ayj_A 56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGI--DVQIYEADPDSF 100 (721)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEE--EEEEECCCTTBG
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCcccccCCCc--eEEEEeccCccc
Confidence 358999999999999999999988 6 899999987 65
|
| >1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* | Back alignment and structure |
|---|
Probab=93.29 E-value=0.038 Score=66.92 Aligned_cols=33 Identities=27% Similarity=0.340 Sum_probs=27.7
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCC-CCcEEEE
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGF-TGKLYFI 74 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~-~v~i~~~ 74 (1466)
..+||+|||||++|+++|+.|++.|. ++.|+|.
T Consensus 3 ~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~ 36 (472)
T 1b37_A 3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEA 36 (472)
T ss_dssp --CCEEEECCBHHHHHHHHHHHHTTCCCEEEECS
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeC
Confidence 35799999999999999999999998 7777554
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=93.25 E-value=0.18 Score=53.02 Aligned_cols=105 Identities=13% Similarity=0.179 Sum_probs=66.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEE
Q psy2951 1204 PESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTA 1283 (1466)
Q Consensus 1204 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~ 1283 (1466)
.+++|+|||+|.+|...+..|.+.|.+|+++.+.. .++ +.++.++.+++++... +.
T Consensus 30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~-------~~~----l~~l~~~~~i~~i~~~----~~--------- 85 (223)
T 3dfz_A 30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTV-------SAE----INEWEAKGQLRVKRKK----VG--------- 85 (223)
T ss_dssp TTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSC-------CHH----HHHHHHTTSCEEECSC----CC---------
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC-------CHH----HHHHHHcCCcEEEECC----CC---------
Confidence 38999999999999999999999999999998752 233 3444555567665321 11
Q ss_pred EEcCCCCeeecCEEEEeeccccCcc----ccccCCceeeCCCeEEeC--CCccccCCCEEEeccc
Q psy2951 1284 ANLDNGTTIPADLVIVGIGTVLNTN----YLDGKGVELNGQKAVVVN--EYLETNVPGVYAGGDI 1342 (1466)
Q Consensus 1284 v~l~~g~~i~~D~vv~a~G~~p~~~----~~~~~gl~~~~~G~i~vd--~~~~t~~~~v~a~GD~ 1342 (1466)
...--.+|+||.|||...... .++ .|+.++ .+| +.+.-..|.++--|+.
T Consensus 86 ----~~dL~~adLVIaAT~d~~~N~~I~~~ak-~gi~VN-----vvD~p~~~~f~~Paiv~rg~l 140 (223)
T 3dfz_A 86 ----EEDLLNVFFIVVATNDQAVNKFVKQHIK-NDQLVN-----MASSFSDGNIQIPAQFSRGRL 140 (223)
T ss_dssp ----GGGSSSCSEEEECCCCTHHHHHHHHHSC-TTCEEE-----C-----CCSEECCEEEEETTE
T ss_pred ----HhHhCCCCEEEECCCCHHHHHHHHHHHh-CCCEEE-----EeCCcccCeEEEeeEEEeCCE
Confidence 111125999999998654333 222 444443 123 3344446777777764
|
| >3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* | Back alignment and structure |
|---|
Probab=93.07 E-value=0.038 Score=68.76 Aligned_cols=36 Identities=19% Similarity=0.288 Sum_probs=30.3
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCC------ccEEEEcCCC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFT------GKLYFITDEN 630 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~------~~v~~~~~~~ 630 (1466)
.++|+|||||+|||+||+.|++.|.. .+|+++|+.+
T Consensus 56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~ 97 (721)
T 3ayj_A 56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADP 97 (721)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCT
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccC
Confidence 47899999999999999999999821 3488888875
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=92.73 E-value=0.17 Score=53.14 Aligned_cols=75 Identities=15% Similarity=0.138 Sum_probs=52.5
Q ss_pred CCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEE
Q psy2951 733 PESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTA 812 (1466)
Q Consensus 733 ~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~ 812 (1466)
.+++|+|||||.+|...+..|.+.|.+|+++.+.. .++ +.+...+.+++++... +.
T Consensus 30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~-------~~~----l~~l~~~~~i~~i~~~----~~--------- 85 (223)
T 3dfz_A 30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTV-------SAE----INEWEAKGQLRVKRKK----VG--------- 85 (223)
T ss_dssp TTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSC-------CHH----HHHHHHTTSCEEECSC----CC---------
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC-------CHH----HHHHHHcCCcEEEECC----CC---------
Confidence 48999999999999999999999999999997642 233 3344445567665321 11
Q ss_pred EECCCCcEEecCEEEEccccccC
Q psy2951 813 ANLDNGTTIPADLVIVGIGTVLN 835 (1466)
Q Consensus 813 v~~~~g~~i~~D~vi~a~G~~p~ 835 (1466)
.+..-.+|+||.||+....
T Consensus 86 ----~~dL~~adLVIaAT~d~~~ 104 (223)
T 3dfz_A 86 ----EEDLLNVFFIVVATNDQAV 104 (223)
T ss_dssp ----GGGSSSCSEEEECCCCTHH
T ss_pred ----HhHhCCCCEEEECCCCHHH
Confidence 1111248999999987543
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=92.58 E-value=0.31 Score=58.06 Aligned_cols=34 Identities=24% Similarity=0.419 Sum_probs=29.8
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE 629 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~ 629 (1466)
+.++|+|+|+|--|.+.|..|...|++ |++++++
T Consensus 2 ~~M~iiI~G~G~vG~~la~~L~~~~~~--v~vId~d 35 (461)
T 4g65_A 2 NAMKIIILGAGQVGGTLAENLVGENND--ITIVDKD 35 (461)
T ss_dssp CCEEEEEECCSHHHHHHHHHTCSTTEE--EEEEESC
T ss_pred CcCEEEEECCCHHHHHHHHHHHHCCCC--EEEEECC
Confidence 468999999999999999999999988 6677665
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=92.19 E-value=0.092 Score=62.73 Aligned_cols=87 Identities=21% Similarity=0.127 Sum_probs=61.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEE
Q psy2951 1204 PESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTA 1283 (1466)
Q Consensus 1204 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~ 1283 (1466)
.+++|.|||.|.+|+.+|..|+++|.+|++.+..+... + ...+.+++.||+++.+.... +
T Consensus 8 ~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~----~-----~~~~~L~~~gi~~~~g~~~~------~----- 67 (451)
T 3lk7_A 8 ENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDE----N-----PTAQSLLEEGIKVVCGSHPL------E----- 67 (451)
T ss_dssp TTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGG----C-----HHHHHHHHTTCEEEESCCCG------G-----
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccC----C-----hHHHHHHhCCCEEEECCChH------H-----
Confidence 37899999999999999999999999999999865211 1 12345778899887653210 0
Q ss_pred EEcCCCCeee-cCEEEEeeccccCccc---cccCCce
Q psy2951 1284 ANLDNGTTIP-ADLVIVGIGTVLNTNY---LDGKGVE 1316 (1466)
Q Consensus 1284 v~l~~g~~i~-~D~vv~a~G~~p~~~~---~~~~gl~ 1316 (1466)
+ .-. +|+||+++|+.|..+. +++.|++
T Consensus 68 --~----~~~~~d~vv~spgi~~~~p~~~~a~~~gi~ 98 (451)
T 3lk7_A 68 --L----LDEDFCYMIKNPGIPYNNPMVKKALEKQIP 98 (451)
T ss_dssp --G----GGSCEEEEEECTTSCTTSHHHHHHHHTTCC
T ss_pred --h----hcCCCCEEEECCcCCCCChhHHHHHHCCCc
Confidence 0 012 8999999999887663 3344544
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=92.13 E-value=0.14 Score=58.24 Aligned_cols=78 Identities=18% Similarity=0.182 Sum_probs=57.1
Q ss_pred CCeEEEEcCCHHHHH-HHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEE
Q psy2951 1205 ESNVVVIGSSFIGME-AAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTA 1283 (1466)
Q Consensus 1205 ~~~vvVvG~g~~g~e-~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~ 1283 (1466)
.++|.|||.|-+|+. +|..|.++|.+|++.+..+.+. ..+.+++.|++++.+... +.
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~-----------~~~~L~~~gi~v~~g~~~------~~----- 61 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPP-----------MSTQLEALGIDVYEGFDA------AQ----- 61 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTT-----------HHHHHHHTTCEEEESCCG------GG-----
T ss_pred CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcH-----------HHHHHHhCCCEEECCCCH------HH-----
Confidence 578999999999997 8889999999999999875321 234567789988754211 00
Q ss_pred EEcCCCCeeecCEEEEeeccccCccc
Q psy2951 1284 ANLDNGTTIPADLVIVGIGTVLNTNY 1309 (1466)
Q Consensus 1284 v~l~~g~~i~~D~vv~a~G~~p~~~~ 1309 (1466)
+.. ..+|+||++.|+.|..+.
T Consensus 62 --l~~---~~~d~vV~Spgi~~~~p~ 82 (326)
T 3eag_A 62 --LDE---FKADVYVIGNVAKRGMDV 82 (326)
T ss_dssp --GGS---CCCSEEEECTTCCTTCHH
T ss_pred --cCC---CCCCEEEECCCcCCCCHH
Confidence 000 248999999999887664
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=92.08 E-value=0.13 Score=61.34 Aligned_cols=53 Identities=19% Similarity=0.401 Sum_probs=39.3
Q ss_pred cEEEecCHHHHHhhhccc----CCCCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCC
Q psy2951 1185 KVFYLRTVEDANNIAPHI----TPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGA 1238 (1466)
Q Consensus 1185 ~v~~~~~~~~~~~l~~~~----~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~ 1238 (1466)
.++...+.++..++.+.+ ++.++|+|+|||.+|..+|..|.+ ..+|++++.+.
T Consensus 211 ~v~~i~~~~~i~~~~~~~g~~~~~~~~v~I~GgG~ig~~lA~~L~~-~~~v~iIE~d~ 267 (461)
T 4g65_A 211 EVFFVAASNHIRSVMSELQRLEKPYRRIMIVGGGNIGASLAKRLEQ-TYSVKLIERNL 267 (461)
T ss_dssp EEEEEEETTTHHHHHHHTTGGGSCCCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCH
T ss_pred EEEEEeccchHHHHHHhhccccccccEEEEEcchHHHHHHHHHhhh-cCceEEEecCH
Confidence 455554455555444433 347899999999999999999865 58999999874
|
| >1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* | Back alignment and structure |
|---|
Probab=91.72 E-value=0.086 Score=64.17 Aligned_cols=37 Identities=24% Similarity=0.436 Sum_probs=31.0
Q ss_pred CCCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEc
Q psy2951 39 SSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFIT 75 (1466)
Q Consensus 39 ~~~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~ 75 (1466)
.....+|++|||+|++|+.+|.+|++.|.+|.|+|..
T Consensus 7 ~~~~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~ 43 (507)
T 1coy_A 7 ADGDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMG 43 (507)
T ss_dssp CTTCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CcCCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECC
Confidence 3345689999999999999999999998887776544
|
| >3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=91.54 E-value=0.22 Score=59.06 Aligned_cols=58 Identities=22% Similarity=0.333 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccc
Q psy2951 1247 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTV 1304 (1466)
Q Consensus 1247 ~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~ 1304 (1466)
.++.+.+.+.+++.|++++++++|++|...+++++.+|++.+|+++.||.||++.++.
T Consensus 256 ~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~~ 313 (475)
T 3p1w_A 256 GGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYV 313 (475)
T ss_dssp THHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGGC
T ss_pred HHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCcc
Confidence 5688889999999999999999999998326678899999999999999999999988
|
| >3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=91.39 E-value=0.077 Score=65.28 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=28.4
Q ss_pred CCCcEEEECCchHHHHHHHHHHh-cCCCCcEEEEcC
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQ-NGFTGKLYFITD 76 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~-~g~~v~i~~~~~ 76 (1466)
..+|+||||||+||..+|.+|++ .+.+|.|+|...
T Consensus 16 ~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~ 51 (526)
T 3t37_A 16 PNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGE 51 (526)
T ss_dssp -CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSB
T ss_pred CCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCC
Confidence 36999999999999999999998 566777765443
|
| >3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} | Back alignment and structure |
|---|
Probab=90.95 E-value=0.14 Score=62.95 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=31.4
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENF 631 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~ 631 (1466)
..+|+||||||.||+.+|.+|++.+. .+|+++|+.+.
T Consensus 5 ~~yDyIVVGgG~AG~v~A~rLse~~~-~~VLllEaG~~ 41 (577)
T 3q9t_A 5 SHFDFVIVGGGTAGNTVAGRLAENPN-VTVLIVEAGIG 41 (577)
T ss_dssp CEEEEEEESCSHHHHHHHHHHTTSTT-SCEEEECSSCS
T ss_pred CcccEEEECCcHHHHHHHHHHHhCCC-CcEEEEecCCC
Confidence 35899999999999999999999862 34999998754
|
| >3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=90.58 E-value=0.14 Score=62.82 Aligned_cols=58 Identities=17% Similarity=0.267 Sum_probs=43.3
Q ss_pred HhCCcEEEcCceEEEEEecCCCcEEEEEcCCC---CeeecCEEEEeeccccCccccccCCce
Q psy2951 1258 ESKGVKFVMKANVSSFEKNEKNDVTAANLDNG---TTIPADLVIVGIGTVLNTNYLDGKGVE 1316 (1466)
Q Consensus 1258 ~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g---~~i~~D~vv~a~G~~p~~~~~~~~gl~ 1316 (1466)
...++.+++++.+.++. .+++++.+|...+. .++.++.||+|.|..-...+|..+|+.
T Consensus 222 ~r~nl~v~~~~~v~~i~-~~~~~a~gv~~~~~~~~~~~~a~~VILsAGai~SP~LLl~SGig 282 (526)
T 3t37_A 222 GRKNLTILTGSRVRRLK-LEGNQVRSLEVVGRQGSAEVFADQIVLCAGALESPALLMRSGIG 282 (526)
T ss_dssp TCTTEEEECSCEEEEEE-EETTEEEEEEEEETTEEEEEEEEEEEECSHHHHHHHHHHHTTEE
T ss_pred CCCCeEEEeCCEEEEEE-ecCCeEEEEEEEecCceEEEeecceEEcccccCCcchhhhccCC
Confidence 35689999999999998 45667777766433 356889999999976665677666653
|
| >3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} | Back alignment and structure |
|---|
Probab=90.51 E-value=0.16 Score=62.35 Aligned_cols=58 Identities=17% Similarity=0.209 Sum_probs=40.8
Q ss_pred HhCCcEEEcCceEEEEEecC-CCcEEEEEcC--CCC--eeec-CEEEEeeccccCccccccCCc
Q psy2951 1258 ESKGVKFVMKANVSSFEKNE-KNDVTAANLD--NGT--TIPA-DLVIVGIGTVLNTNYLDGKGV 1315 (1466)
Q Consensus 1258 ~~~gv~~~~~~~v~~i~~~~-~g~~~~v~l~--~g~--~i~~-D~vv~a~G~~p~~~~~~~~gl 1315 (1466)
++.++++++++.|+++...+ ++++++|++. +|. ++.| -.||+|+|..-...+|..+|+
T Consensus 217 ~r~Nl~v~~~a~v~ri~~~~~~~~a~GV~~~~~~g~~~~v~A~keVILsaGa~~sp~lL~~SGI 280 (577)
T 3q9t_A 217 NKPNITIVPEVHSKRLIINEADRTCKGVTVVTAAGNELNFFADREVILSQGVFETPKLLMLSGI 280 (577)
T ss_dssp SCTTEEEECSEEEEEEEEETTTTEEEEEEEEETTSCEEEEEEEEEEEECSHHHHHHHHHHHTTE
T ss_pred cCCCeEEEcCcEEEEEEEeCCCCEEEEEEEEeCCCcEEEEEeeeEEEEcccccCChHHHHHcCC
Confidence 45689999999999997432 5678888875 364 4566 469999997654445544543
|
| >1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* | Back alignment and structure |
|---|
Probab=90.40 E-value=0.13 Score=62.94 Aligned_cols=35 Identities=23% Similarity=0.561 Sum_probs=31.0
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENF 631 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~ 631 (1466)
..+|+||||||+||+.+|.+|++ |.+ |+++|+.+.
T Consensus 25 ~~yD~IIVGsG~AG~v~A~rLse-g~~--VlvLEaG~~ 59 (536)
T 1ju2_A 25 GSYDYVIVGGGTSGCPLAATLSE-KYK--VLVLERGSL 59 (536)
T ss_dssp EEEEEEEECCSTTHHHHHHHHTT-TSC--EEEECSSBC
T ss_pred CcccEEEECccHHHHHHHHHHhc-CCc--EEEEecCCC
Confidence 35899999999999999999999 876 999998754
|
| >1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* | Back alignment and structure |
|---|
Probab=90.30 E-value=0.13 Score=62.89 Aligned_cols=59 Identities=25% Similarity=0.215 Sum_probs=43.1
Q ss_pred HHhCCcEEEcCceEEEEEecCC--CcEEEEEcC--CCC--ee---ecCEEEEeeccccCccccccCCc
Q psy2951 1257 FESKGVKFVMKANVSSFEKNEK--NDVTAANLD--NGT--TI---PADLVIVGIGTVLNTNYLDGKGV 1315 (1466)
Q Consensus 1257 ~~~~gv~~~~~~~v~~i~~~~~--g~~~~v~l~--~g~--~i---~~D~vv~a~G~~p~~~~~~~~gl 1315 (1466)
.++.|+++++++.|+++...++ +++.+|++. +|+ ++ .++.||+|+|..-+..+|..+|+
T Consensus 204 ~~~~~~~v~~~~~v~~i~~~~~~~~~~~GV~~~~~~g~~~~~~v~a~k~VILaaGa~~sp~lL~~SGi 271 (536)
T 1ju2_A 204 GNSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGV 271 (536)
T ss_dssp SCTTTEEEEESCEEEEEEECCSSSCBEEEEEEECTTSCEEEEEEEEEEEEEECCHHHHHHHHHHHTTE
T ss_pred hcCCCcEEEeCCEEEEEEECCCCCCEEEEEEEEeCCCceEEEEeccCCEEEEcCcccCCHHHHHHcCC
Confidence 4577999999999999974332 378888774 465 34 57899999998655556666665
|
| >1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* | Back alignment and structure |
|---|
Probab=90.28 E-value=0.14 Score=62.30 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=30.5
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcC
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITD 76 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~ 76 (1466)
..+|++|||+|++|+.+|.+|++.|.++.|+|...
T Consensus 4 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~ 38 (504)
T 1n4w_A 4 GYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ 38 (504)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 35899999999999999999999999888776544
|
| >1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* | Back alignment and structure |
|---|
Probab=90.00 E-value=0.24 Score=60.19 Aligned_cols=62 Identities=13% Similarity=0.134 Sum_probs=43.9
Q ss_pred HHHHHHhCCcEEEcCceEEEEEecCCC-cEEEEEcC--CC-----CeeecCEEEEeeccccCccccccCC
Q psy2951 1253 ITKLFESKGVKFVMKANVSSFEKNEKN-DVTAANLD--NG-----TTIPADLVIVGIGTVLNTNYLDGKG 1314 (1466)
Q Consensus 1253 l~~~~~~~gv~~~~~~~v~~i~~~~~g-~~~~v~l~--~g-----~~i~~D~vv~a~G~~p~~~~~~~~g 1314 (1466)
+....+..++++++++.|++|...+++ ++.+|+.. +| .++.|+.||+|+|..-...+|..+|
T Consensus 233 l~~a~~~~n~~i~~~~~v~~i~~~~~g~~~~gV~~~~~~g~~~~~~~~~A~~VIlaaGa~~sp~lL~~Sg 302 (507)
T 1coy_A 233 LAQAAATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGTSKLLVSMK 302 (507)
T ss_dssp HHHHHHTTCEEEECSEEEEEEEECSSSSEEEEEEEECTTSCEEEEEEEEEEEEEECSHHHHHHHHHHHHH
T ss_pred HHHHHhcCCcEEEeCCEEEEEEECCCCCEEEEEEEeCCCCcccccEEEEeCEEEEccCccCCHHHHHhcc
Confidence 444334445999999999999843334 68888774 56 3678999999999865555555555
|
| >1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* | Back alignment and structure |
|---|
Probab=89.86 E-value=0.22 Score=60.44 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=31.1
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENF 631 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~ 631 (1466)
.+|++|||+|++|+.+|..|++.|.+ |+++|+...
T Consensus 5 ~~d~~iiG~G~~g~~~a~~l~~~~~~--v~~~e~~~~ 39 (504)
T 1n4w_A 5 YVPAVVIGTGYGAAVSALRLGEAGVQ--TLMLEMGQL 39 (504)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCC--EEEEESSCC
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCc--EEEEeCCCC
Confidence 57999999999999999999999887 788887754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1466 | ||||
| d1d7ya2 | 121 | c.3.1.5 (A:116-236) NADH-dependent ferredoxin redu | 9e-23 | |
| d1d7ya2 | 121 | c.3.1.5 (A:116-236) NADH-dependent ferredoxin redu | 9e-23 | |
| d1d7ya2 | 121 | c.3.1.5 (A:116-236) NADH-dependent ferredoxin redu | 9e-23 | |
| d1m6ia2 | 137 | c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF | 1e-21 | |
| d1m6ia2 | 137 | c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF | 1e-21 | |
| d1m6ia2 | 137 | c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF | 1e-21 | |
| d1q1ra2 | 133 | c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseud | 3e-21 | |
| d1q1ra2 | 133 | c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseud | 3e-21 | |
| d1q1ra2 | 133 | c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseud | 3e-21 | |
| d1xhca2 | 122 | c.3.1.5 (A:104-225) NADH oxidase /nitrite reductas | 2e-19 | |
| d1xhca2 | 122 | c.3.1.5 (A:104-225) NADH oxidase /nitrite reductas | 2e-19 | |
| d1xhca2 | 122 | c.3.1.5 (A:104-225) NADH oxidase /nitrite reductas | 2e-19 | |
| d1nhpa2 | 123 | c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus | 5e-18 | |
| d1nhpa2 | 123 | c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus | 5e-18 | |
| d1nhpa2 | 123 | c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus | 5e-18 | |
| d1d7ya1 | 183 | c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo | 1e-15 | |
| d1d7ya1 | 183 | c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo | 1e-15 | |
| d1d7ya1 | 183 | c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo | 1e-15 | |
| d1d7ya1 | 183 | c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo | 8e-09 | |
| d1d7ya1 | 183 | c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo | 8e-09 | |
| d1d7ya1 | 183 | c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo | 8e-09 | |
| d1q1ra1 | 185 | c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas | 4e-14 | |
| d1q1ra1 | 185 | c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas | 4e-14 | |
| d1q1ra1 | 185 | c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas | 4e-14 | |
| d1q1ra1 | 185 | c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas | 4e-04 | |
| d1q1ra1 | 185 | c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas | 4e-04 | |
| d1q1ra1 | 185 | c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas | 4e-04 | |
| d1m6ia1 | 213 | c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f | 3e-13 | |
| d1m6ia1 | 213 | c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f | 3e-13 | |
| d1m6ia1 | 213 | c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f | 3e-13 | |
| d1m6ia1 | 213 | c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f | 1e-06 | |
| d1m6ia1 | 213 | c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f | 1e-06 | |
| d1m6ia1 | 213 | c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f | 1e-06 | |
| d1q1ra3 | 103 | d.87.1.1 (A:320-422) Putidaredoxin reductase {Pseu | 2e-12 | |
| d1q1ra3 | 103 | d.87.1.1 (A:320-422) Putidaredoxin reductase {Pseu | 4e-11 | |
| d1q1ra3 | 103 | d.87.1.1 (A:320-422) Putidaredoxin reductase {Pseu | 4e-11 | |
| d1nhpa1 | 198 | c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter | 8e-12 | |
| d1nhpa1 | 198 | c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter | 8e-12 | |
| d1nhpa1 | 198 | c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter | 8e-12 | |
| d1nhpa1 | 198 | c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter | 2e-04 | |
| d1nhpa1 | 198 | c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter | 2e-04 | |
| d1nhpa1 | 198 | c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter | 2e-04 | |
| d1ebda1 | 223 | c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd | 1e-11 | |
| d1ebda1 | 223 | c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd | 1e-11 | |
| d1ebda1 | 223 | c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd | 1e-11 | |
| d1h6va2 | 122 | c.3.1.5 (A:171-292) Mammalian thioredoxin reductas | 5e-11 | |
| d1h6va2 | 122 | c.3.1.5 (A:171-292) Mammalian thioredoxin reductas | 5e-11 | |
| d1h6va2 | 122 | c.3.1.5 (A:171-292) Mammalian thioredoxin reductas | 5e-11 | |
| d1rfsa_ | 127 | b.33.1.1 (A:) ISP subunit from chloroplast cytochr | 3e-10 | |
| d1rfsa_ | 127 | b.33.1.1 (A:) ISP subunit from chloroplast cytochr | 3e-10 | |
| d1fqta_ | 109 | b.33.1.1 (A:) Rieske-type ferredoxin associated wi | 3e-10 | |
| d1fqta_ | 109 | b.33.1.1 (A:) Rieske-type ferredoxin associated wi | 2e-09 | |
| d1mo9a1 | 261 | c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop | 7e-10 | |
| d1mo9a1 | 261 | c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop | 7e-10 | |
| d1mo9a1 | 261 | c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop | 7e-10 | |
| d1djqa2 | 156 | c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, | 8e-10 | |
| d1djqa2 | 156 | c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, | 8e-10 | |
| d1djqa2 | 156 | c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, | 8e-10 | |
| d1onfa2 | 117 | c.3.1.5 (A:154-270) Glutathione reductase {Plasmod | 1e-09 | |
| d1onfa2 | 117 | c.3.1.5 (A:154-270) Glutathione reductase {Plasmod | 1e-09 | |
| d1onfa2 | 117 | c.3.1.5 (A:154-270) Glutathione reductase {Plasmod | 1e-09 | |
| d3grsa1 | 221 | c.3.1.5 (A:18-165,A:291-363) Glutathione reductase | 1e-09 | |
| d3grsa1 | 221 | c.3.1.5 (A:18-165,A:291-363) Glutathione reductase | 1e-09 | |
| d3grsa1 | 221 | c.3.1.5 (A:18-165,A:291-363) Glutathione reductase | 1e-09 | |
| d1gesa2 | 116 | c.3.1.5 (A:147-262) Glutathione reductase {Escheri | 1e-09 | |
| d1gesa2 | 116 | c.3.1.5 (A:147-262) Glutathione reductase {Escheri | 1e-09 | |
| d1gesa2 | 116 | c.3.1.5 (A:147-262) Glutathione reductase {Escheri | 1e-09 | |
| d1xhca1 | 167 | c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite | 3e-09 | |
| d1xhca1 | 167 | c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite | 3e-09 | |
| d1xhca1 | 167 | c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite | 3e-09 | |
| d1xhca1 | 167 | c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite | 3e-04 | |
| d1xhca1 | 167 | c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite | 3e-04 | |
| d1xhca1 | 167 | c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite | 3e-04 | |
| d1g8kb_ | 133 | b.33.1.1 (B:) Arsenite oxidase Rieske subunit {Alc | 1e-08 | |
| d1g8kb_ | 133 | b.33.1.1 (B:) Arsenite oxidase Rieske subunit {Alc | 1e-07 | |
| d3lada2 | 119 | c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase | 1e-08 | |
| d3lada2 | 119 | c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase | 1e-08 | |
| d3lada2 | 119 | c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase | 1e-08 | |
| d1feca2 | 117 | c.3.1.5 (A:170-286) Trypanothione reductase {Crith | 2e-08 | |
| d1feca2 | 117 | c.3.1.5 (A:170-286) Trypanothione reductase {Crith | 2e-08 | |
| d1feca2 | 117 | c.3.1.5 (A:170-286) Trypanothione reductase {Crith | 2e-08 | |
| d2gjca1 | 311 | c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th | 2e-08 | |
| d2gjca1 | 311 | c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th | 2e-08 | |
| d2gjca1 | 311 | c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th | 2e-08 | |
| d1nyka_ | 156 | b.33.1.1 (A:) Soluble Rieske protein {Thermus ther | 2e-08 | |
| d1nyka_ | 156 | b.33.1.1 (A:) Soluble Rieske protein {Thermus ther | 2e-07 | |
| d1mo9a2 | 121 | c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl co | 4e-08 | |
| d1mo9a2 | 121 | c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl co | 4e-08 | |
| d1mo9a2 | 121 | c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl co | 4e-08 | |
| d1vm9a_ | 109 | b.33.1.1 (A:) Toluene-4-monooxygenase system prote | 6e-08 | |
| d1vm9a_ | 109 | b.33.1.1 (A:) Toluene-4-monooxygenase system prote | 1e-07 | |
| d1aoga2 | 117 | c.3.1.5 (A:170-286) Trypanothione reductase {Trypa | 7e-08 | |
| d1aoga2 | 117 | c.3.1.5 (A:170-286) Trypanothione reductase {Trypa | 7e-08 | |
| d1aoga2 | 117 | c.3.1.5 (A:170-286) Trypanothione reductase {Trypa | 7e-08 | |
| d1d7ya3 | 97 | d.87.1.1 (A:309-405) NADH-dependent ferredoxin red | 1e-07 | |
| d1d7ya3 | 97 | d.87.1.1 (A:309-405) NADH-dependent ferredoxin red | 2e-07 | |
| d1d7ya3 | 97 | d.87.1.1 (A:309-405) NADH-dependent ferredoxin red | 4e-07 | |
| d1feca1 | 240 | c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas | 3e-07 | |
| d1feca1 | 240 | c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas | 3e-07 | |
| d1feca1 | 240 | c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas | 3e-07 | |
| d2jo6a1 | 108 | b.33.1.3 (A:1-108) NADH-nitrite reductase small su | 3e-07 | |
| d2jo6a1 | 108 | b.33.1.3 (A:1-108) NADH-nitrite reductase small su | 3e-07 | |
| d1lvla2 | 115 | c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase | 5e-07 | |
| d1lvla2 | 115 | c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase | 5e-07 | |
| d1lvla2 | 115 | c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase | 5e-07 | |
| d1djqa3 | 233 | c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehyd | 7e-07 | |
| d1djqa3 | 233 | c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehyd | 7e-07 | |
| d1djqa3 | 233 | c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehyd | 7e-07 | |
| d1ojta1 | 229 | c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh | 1e-06 | |
| d1ojta1 | 229 | c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh | 1e-06 | |
| d1ojta1 | 229 | c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh | 1e-06 | |
| d1fl2a1 | 184 | c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide | 2e-06 | |
| d1fl2a1 | 184 | c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide | 2e-06 | |
| d1fl2a1 | 184 | c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide | 2e-06 | |
| d1jm1a_ | 202 | b.33.1.1 (A:) Rieske protein II (SoxF) {Archaeon S | 2e-06 | |
| d1jm1a_ | 202 | b.33.1.1 (A:) Rieske protein II (SoxF) {Archaeon S | 4e-06 | |
| d1z01a1 | 148 | b.33.1.2 (A:16-163) 2-oxo-1,2-dihydroquinoline 8-m | 2e-06 | |
| d1z01a1 | 148 | b.33.1.2 (A:16-163) 2-oxo-1,2-dihydroquinoline 8-m | 6e-05 | |
| d1dxla1 | 221 | c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd | 3e-06 | |
| d1dxla1 | 221 | c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd | 3e-06 | |
| d1dxla1 | 221 | c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd | 3e-06 | |
| d3lada1 | 229 | c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd | 1e-05 | |
| d3lada1 | 229 | c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd | 1e-05 | |
| d3lada1 | 229 | c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd | 1e-05 | |
| d1vdca1 | 192 | c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase | 1e-05 | |
| d1vdca1 | 192 | c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase | 1e-05 | |
| d1vdca1 | 192 | c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase | 1e-05 | |
| d1trba1 | 190 | c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase | 2e-05 | |
| d1trba1 | 190 | c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase | 2e-05 | |
| d1trba1 | 190 | c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase | 2e-05 | |
| d3grsa2 | 125 | c.3.1.5 (A:166-290) Glutathione reductase {Human ( | 2e-05 | |
| d3grsa2 | 125 | c.3.1.5 (A:166-290) Glutathione reductase {Human ( | 2e-05 | |
| d3grsa2 | 125 | c.3.1.5 (A:166-290) Glutathione reductase {Human ( | 2e-05 | |
| d1v59a2 | 122 | c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase | 4e-05 | |
| d1v59a2 | 122 | c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase | 4e-05 | |
| d1v59a2 | 122 | c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase | 4e-05 | |
| d2de6a1 | 142 | b.33.1.2 (A:1-142) Terminal oxygenase component of | 4e-05 | |
| d2de6a1 | 142 | b.33.1.2 (A:1-142) Terminal oxygenase component of | 1e-04 | |
| d1xdia1 | 233 | c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd | 5e-05 | |
| d1xdia1 | 233 | c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd | 5e-05 | |
| d1xdia1 | 233 | c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd | 5e-05 | |
| d1ojta2 | 125 | c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase | 8e-05 | |
| d1ojta2 | 125 | c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase | 8e-05 | |
| d1ojta2 | 125 | c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase | 8e-05 | |
| d1fcda1 | 186 | c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf | 2e-04 | |
| d1fcda1 | 186 | c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf | 2e-04 | |
| d1fcda1 | 186 | c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf | 2e-04 | |
| d1fcda1 | 186 | c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf | 5e-04 | |
| d1fcda1 | 186 | c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf | 5e-04 | |
| d1fcda1 | 186 | c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf | 5e-04 | |
| d1riea_ | 127 | b.33.1.1 (A:) ISP subunit of the mitochondrial cyt | 2e-04 | |
| d1riea_ | 127 | b.33.1.1 (A:) ISP subunit of the mitochondrial cyt | 5e-04 | |
| d1lvla1 | 220 | c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd | 2e-04 | |
| d1lvla1 | 220 | c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd | 2e-04 | |
| d1lvla1 | 220 | c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd | 2e-04 | |
| d1ebda2 | 117 | c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase | 2e-04 | |
| d1ebda2 | 117 | c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase | 2e-04 | |
| d1ebda2 | 117 | c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase | 2e-04 | |
| d1cjca2 | 230 | c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase | 3e-04 | |
| d1cjca2 | 230 | c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase | 3e-04 | |
| d1cjca2 | 230 | c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase | 3e-04 | |
| d1v59a1 | 233 | c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd | 3e-04 | |
| d1v59a1 | 233 | c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd | 3e-04 | |
| d1v59a1 | 233 | c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd | 3e-04 | |
| d1seza1 | 373 | c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox | 6e-04 | |
| d1seza1 | 373 | c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox | 6e-04 | |
| d1seza1 | 373 | c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox | 6e-04 | |
| d1gesa1 | 217 | c.3.1.5 (A:3-146,A:263-335) Glutathione reductase | 8e-04 | |
| d1gesa1 | 217 | c.3.1.5 (A:3-146,A:263-335) Glutathione reductase | 8e-04 | |
| d1gesa1 | 217 | c.3.1.5 (A:3-146,A:263-335) Glutathione reductase | 8e-04 | |
| d3cx5e1 | 129 | b.33.1.1 (E:87-215) ISP subunit of the mitochondri | 0.003 | |
| d2bcgg1 | 297 | c.3.1.3 (G:5-301) Guanine nucleotide dissociation | 0.003 | |
| d2bcgg1 | 297 | c.3.1.3 (G:5-301) Guanine nucleotide dissociation | 0.003 | |
| d2bcgg1 | 297 | c.3.1.3 (G:5-301) Guanine nucleotide dissociation | 0.003 | |
| d1dxla2 | 123 | c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase | 0.003 | |
| d1dxla2 | 123 | c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase | 0.003 | |
| d1dxla2 | 123 | c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase | 0.003 | |
| d1h6va1 | 235 | c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin | 0.004 | |
| d1h6va1 | 235 | c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin | 0.004 | |
| d1h6va1 | 235 | c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin | 0.004 |
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Score = 92.9 bits (230), Expect = 9e-23
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 6/118 (5%)
Query: 162 KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQES 221
V LRT+EDA I + P+S ++++G IG+E AA + V++V +
Sbjct: 10 PVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRA 69
Query: 222 LGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 279
+ + + + ++GV + +V+ LD+GT I AD+V+VGIG
Sbjct: 70 APATLADFVARYHAAQGVDLRFERSVTGSVDG------VVLLDDGTRIAADMVVVGIG 121
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Score = 92.9 bits (230), Expect = 9e-23
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 6/118 (5%)
Query: 714 KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQES 773
V LRT+EDA I + P+S ++++G IG+E AA + V++V +
Sbjct: 10 PVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRA 69
Query: 774 LGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 831
+ + + + ++GV + +V+ LD+GT I AD+V+VGIG
Sbjct: 70 APATLADFVARYHAAQGVDLRFERSVTGSVDG------VVLLDDGTRIAADMVVVGIG 121
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Score = 92.9 bits (230), Expect = 9e-23
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 6/118 (5%)
Query: 1185 KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQES 1244
V LRT+EDA I + P+S ++++G IG+E AA + V++V +
Sbjct: 10 PVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRA 69
Query: 1245 LGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 1302
+ + + + ++GV + +V+ LD+GT I AD+V+VGIG
Sbjct: 70 APATLADFVARYHAAQGVDLRFERSVTGSVDG------VVLLDDGTRIAADMVVVGIG 121
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.8 bits (222), Expect = 1e-21
Identities = 24/138 (17%), Positives = 53/138 (38%), Gaps = 11/138 (7%)
Query: 151 PRTI-----SQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKV 205
PR++ + A+ ++ R + D ++ ++ +IG F+G E A K
Sbjct: 1 PRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKA 60
Query: 206 KS----VTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAA 261
++ V + + L + + + +GVK + A V S + +
Sbjct: 61 RALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVS--SGKLLI 118
Query: 262 NLDNGTTIPADLVIVGIG 279
L +G + D ++ +G
Sbjct: 119 KLKDGRKVETDHIVAAVG 136
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.8 bits (222), Expect = 1e-21
Identities = 24/138 (17%), Positives = 53/138 (38%), Gaps = 11/138 (7%)
Query: 703 PRTI-----SQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKV 757
PR++ + A+ ++ R + D ++ ++ +IG F+G E A K
Sbjct: 1 PRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKA 60
Query: 758 KS----VTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAA 813
++ V + + L + + + +GVK + A V S + +
Sbjct: 61 RALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVS--SGKLLI 118
Query: 814 NLDNGTTIPADLVIVGIG 831
L +G + D ++ +G
Sbjct: 119 KLKDGRKVETDHIVAAVG 136
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.8 bits (222), Expect = 1e-21
Identities = 24/138 (17%), Positives = 53/138 (38%), Gaps = 11/138 (7%)
Query: 1174 PRTI-----SQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKV 1228
PR++ + A+ ++ R + D ++ ++ +IG F+G E A K
Sbjct: 1 PRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKA 60
Query: 1229 KS----VTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAA 1284
++ V + + L + + + +GVK + A V S + +
Sbjct: 61 RALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVS--SGKLLI 118
Query: 1285 NLDNGTTIPADLVIVGIG 1302
L +G + D ++ +G
Sbjct: 119 KLKDGRKVETDHIVAAVG 136
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 133 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Score = 89.2 bits (220), Expect = 3e-21
Identities = 43/130 (33%), Positives = 57/130 (43%), Gaps = 1/130 (0%)
Query: 151 PRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTV 210
P N YLRT+EDA I + ++ +VVIG +IG+E AA VT+
Sbjct: 4 PVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTL 63
Query: 211 VGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKND-VTAANLDNGTTI 269
+ A + V L GV V FE + VTA ++GT +
Sbjct: 64 LDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRL 123
Query: 270 PADLVIVGIG 279
PADLVI GIG
Sbjct: 124 PADLVIAGIG 133
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 133 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Score = 89.2 bits (220), Expect = 3e-21
Identities = 43/130 (33%), Positives = 57/130 (43%), Gaps = 1/130 (0%)
Query: 703 PRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTV 762
P N YLRT+EDA I + ++ +VVIG +IG+E AA VT+
Sbjct: 4 PVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTL 63
Query: 763 VGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKND-VTAANLDNGTTI 821
+ A + V L GV V FE + VTA ++GT +
Sbjct: 64 LDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRL 123
Query: 822 PADLVIVGIG 831
PADLVI GIG
Sbjct: 124 PADLVIAGIG 133
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 133 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Score = 89.2 bits (220), Expect = 3e-21
Identities = 43/130 (33%), Positives = 57/130 (43%), Gaps = 1/130 (0%)
Query: 1174 PRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTV 1233
P N YLRT+EDA I + ++ +VVIG +IG+E AA VT+
Sbjct: 4 PVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTL 63
Query: 1234 VGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKND-VTAANLDNGTTI 1292
+ A + V L GV V FE + VTA ++GT +
Sbjct: 64 LDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRL 123
Query: 1293 PADLVIVGIG 1302
PADLVI GIG
Sbjct: 124 PADLVIAGIG 133
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 122 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Score = 83.2 bits (205), Expect = 2e-19
Identities = 35/123 (28%), Positives = 52/123 (42%), Gaps = 9/123 (7%)
Query: 159 GVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF 218
G + LRT+ DA+ I I ++IG FIG+E A A V ++ RGA+
Sbjct: 9 GKEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFL 68
Query: 219 QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 278
L +E+ I + E GVKF + + + + L N I + I I
Sbjct: 69 G--LDEELSNMIKDMLEETGVKFFLNSELLEANEEGV-------LTNSGFIEGKVKICAI 119
Query: 279 GTV 281
G V
Sbjct: 120 GIV 122
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 122 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Score = 83.2 bits (205), Expect = 2e-19
Identities = 35/123 (28%), Positives = 52/123 (42%), Gaps = 9/123 (7%)
Query: 711 GVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF 770
G + LRT+ DA+ I I ++IG FIG+E A A V ++ RGA+
Sbjct: 9 GKEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFL 68
Query: 771 QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 830
L +E+ I + E GVKF + + + + L N I + I I
Sbjct: 69 G--LDEELSNMIKDMLEETGVKFFLNSELLEANEEGV-------LTNSGFIEGKVKICAI 119
Query: 831 GTV 833
G V
Sbjct: 120 GIV 122
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 122 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Score = 83.2 bits (205), Expect = 2e-19
Identities = 35/123 (28%), Positives = 52/123 (42%), Gaps = 9/123 (7%)
Query: 1182 GVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF 1241
G + LRT+ DA+ I I ++IG FIG+E A A V ++ RGA+
Sbjct: 9 GKEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFL 68
Query: 1242 QESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 1301
L +E+ I + E GVKF + + + + L N I + I I
Sbjct: 69 G--LDEELSNMIKDMLEETGVKFFLNSELLEANEEGV-------LTNSGFIEGKVKICAI 119
Query: 1302 GTV 1304
G V
Sbjct: 120 GIV 122
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 123 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Score = 79.5 bits (195), Expect = 5e-18
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 5/118 (4%)
Query: 163 VFYLRTVEDANNIAPHITPES--NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQE 220
++ +R + A + NVVVIGS +IG+EAA A K VTV+ P
Sbjct: 9 IYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGV 68
Query: 221 SLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 278
L KE + +T+ E+ + V +E + + + + ADLV+V +
Sbjct: 69 YLDKEFTDVLTEEMEANNITIATGETVERYEGDGRVQKV---VTDKNAYDADLVVVAV 123
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 123 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Score = 79.5 bits (195), Expect = 5e-18
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 5/118 (4%)
Query: 715 VFYLRTVEDANNIAPHITPES--NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQE 772
++ +R + A + NVVVIGS +IG+EAA A K VTV+ P
Sbjct: 9 IYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGV 68
Query: 773 SLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 830
L KE + +T+ E+ + V +E + + + + ADLV+V +
Sbjct: 69 YLDKEFTDVLTEEMEANNITIATGETVERYEGDGRVQKV---VTDKNAYDADLVVVAV 123
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 123 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Score = 79.5 bits (195), Expect = 5e-18
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 5/118 (4%)
Query: 1186 VFYLRTVEDANNIAPHITPES--NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQE 1243
++ +R + A + NVVVIGS +IG+EAA A K VTV+ P
Sbjct: 9 IYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGV 68
Query: 1244 SLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 1301
L KE + +T+ E+ + V +E + + + + ADLV+V +
Sbjct: 69 YLDKEFTDVLTEEMEANNITIATGETVERYEGDGRVQKV---VTDKNAYDADLVVVAV 123
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Score = 74.4 bits (181), Expect = 1e-15
Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%)
Query: 185 VVVIGSSFIGMEAAAFCASKVKSVTVVGRG----------AVPFQESLGKEVGERITKLF 234
VVV+G+ + A + G + + +
Sbjct: 6 VVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCK 65
Query: 235 ESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDG---KG 291
+ V++++ SF+ +G T+P +++ G + +
Sbjct: 66 RAPEVEWLLGVTAQSFDPQAHTVAL----SDGRTLPYGTLVLATGAAPRAVLANDALARA 121
Query: 292 VELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNM 351
L + V+ Y T P VYA GD+ + + I + AQ G A ++
Sbjct: 122 AGLACDDGIFVDAYGRTTCPDVYALGDVTRQR-NPLSGRFERIETWSNAQNQGIAVARHL 180
Query: 352 VE 353
V+
Sbjct: 181 VD 182
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Score = 74.4 bits (181), Expect = 1e-15
Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%)
Query: 737 VVVIGSSFIGMEAAAFCASKVKSVTVVGRG----------AVPFQESLGKEVGERITKLF 786
VVV+G+ + A + G + + +
Sbjct: 6 VVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCK 65
Query: 787 ESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDG---KG 843
+ V++++ SF+ +G T+P +++ G + +
Sbjct: 66 RAPEVEWLLGVTAQSFDPQAHTVAL----SDGRTLPYGTLVLATGAAPRAVLANDALARA 121
Query: 844 VELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNM 903
L + V+ Y T P VYA GD+ + + I + AQ G A ++
Sbjct: 122 AGLACDDGIFVDAYGRTTCPDVYALGDVTRQR-NPLSGRFERIETWSNAQNQGIAVARHL 180
Query: 904 VE 905
V+
Sbjct: 181 VD 182
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Score = 74.4 bits (181), Expect = 1e-15
Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%)
Query: 1208 VVVIGSSFIGMEAAAFCASKVKSVTVVGRG----------AVPFQESLGKEVGERITKLF 1257
VVV+G+ + A + G + + +
Sbjct: 6 VVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCK 65
Query: 1258 ESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDG---KG 1314
+ V++++ SF+ +G T+P +++ G + +
Sbjct: 66 RAPEVEWLLGVTAQSFDPQAHTVAL----SDGRTLPYGTLVLATGAAPRAVLANDALARA 121
Query: 1315 VELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNM 1374
L + V+ Y T P VYA GD+ + + I + AQ G A ++
Sbjct: 122 AGLACDDGIFVDAYGRTTCPDVYALGDVTRQR-NPLSGRFERIETWSNAQNQGIAVARHL 180
Query: 1375 VE 1376
V+
Sbjct: 181 VD 182
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Score = 54.7 bits (130), Expect = 8e-09
Identities = 37/163 (22%), Positives = 64/163 (39%), Gaps = 12/163 (7%)
Query: 47 IVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFY 106
+V+G G + + V LRQ G+ G + + DE PYDR LSK D+ +R +
Sbjct: 7 VVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRL-DCK 65
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYL 166
+ ++ + G S + L DG ++ + + LATG++PR + D + + L
Sbjct: 66 RAPEVEWLLGVTAQSFDP-QAHTVALSDGRTLPYGTLVLATGAAPRAVLANDALARAAGL 124
Query: 167 RT----VEDANNIAPHITPE------SNVVVIGSSFIGMEAAA 199
DA + F +E +
Sbjct: 125 ACDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWS 167
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Score = 54.7 bits (130), Expect = 8e-09
Identities = 37/163 (22%), Positives = 64/163 (39%), Gaps = 12/163 (7%)
Query: 599 IVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFY 658
+V+G G + + V LRQ G+ G + + DE PYDR LSK D+ +R +
Sbjct: 7 VVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRL-DCK 65
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYL 718
+ ++ + G S + L DG ++ + + LATG++PR + D + + L
Sbjct: 66 RAPEVEWLLGVTAQSFDP-QAHTVALSDGRTLPYGTLVLATGAAPRAVLANDALARAAGL 124
Query: 719 RT----VEDANNIAPHITPE------SNVVVIGSSFIGMEAAA 751
DA + F +E +
Sbjct: 125 ACDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWS 167
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Score = 54.7 bits (130), Expect = 8e-09
Identities = 37/163 (22%), Positives = 64/163 (39%), Gaps = 12/163 (7%)
Query: 1070 IVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFY 1129
+V+G G + + V LRQ G+ G + + DE PYDR LSK D+ +R +
Sbjct: 7 VVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRL-DCK 65
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYL 1189
+ ++ + G S + L DG ++ + + LATG++PR + D + + L
Sbjct: 66 RAPEVEWLLGVTAQSFDP-QAHTVALSDGRTLPYGTLVLATGAAPRAVLANDALARAAGL 124
Query: 1190 RT----VEDANNIAPHITPE------SNVVVIGSSFIGMEAAA 1222
DA + F +E +
Sbjct: 125 ACDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWS 167
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Score = 70.2 bits (170), Expect = 4e-14
Identities = 32/182 (17%), Positives = 59/182 (32%), Gaps = 16/182 (8%)
Query: 184 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP----------FQESLGKEVGERITKL 233
NVV++G+ G+E A + + G GK E +
Sbjct: 5 NVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLR 64
Query: 234 FESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLV---IVGIGTVLNTNYLDGK 290
++ + D L +G + D + G + N
Sbjct: 65 TPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPLIPNCELASAA 124
Query: 291 GVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALN 350
G++++ V+NE+++T+ P + A GD A Y++ I A R A
Sbjct: 125 GLQVDNGI--VINEHMQTSDPLIMAVGDCARFH-SQLYDRWVRIESVPNALEQARKIAAI 181
Query: 351 MV 352
+
Sbjct: 182 LC 183
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Score = 70.2 bits (170), Expect = 4e-14
Identities = 32/182 (17%), Positives = 59/182 (32%), Gaps = 16/182 (8%)
Query: 736 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP----------FQESLGKEVGERITKL 785
NVV++G+ G+E A + + G GK E +
Sbjct: 5 NVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLR 64
Query: 786 FESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLV---IVGIGTVLNTNYLDGK 842
++ + D L +G + D + G + N
Sbjct: 65 TPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPLIPNCELASAA 124
Query: 843 GVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALN 902
G++++ V+NE+++T+ P + A GD A Y++ I A R A
Sbjct: 125 GLQVDNGI--VINEHMQTSDPLIMAVGDCARFH-SQLYDRWVRIESVPNALEQARKIAAI 181
Query: 903 MV 904
+
Sbjct: 182 LC 183
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Score = 70.2 bits (170), Expect = 4e-14
Identities = 32/182 (17%), Positives = 59/182 (32%), Gaps = 16/182 (8%)
Query: 1207 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP----------FQESLGKEVGERITKL 1256
NVV++G+ G+E A + + G GK E +
Sbjct: 5 NVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLR 64
Query: 1257 FESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLV---IVGIGTVLNTNYLDGK 1313
++ + D L +G + D + G + N
Sbjct: 65 TPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPLIPNCELASAA 124
Query: 1314 GVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALN 1373
G++++ V+NE+++T+ P + A GD A Y++ I A R A
Sbjct: 125 GLQVDNGI--VINEHMQTSDPLIMAVGDCARFH-SQLYDRWVRIESVPNALEQARKIAAI 181
Query: 1374 MV 1375
+
Sbjct: 182 LC 183
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Score = 40.9 bits (94), Expect = 4e-04
Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Query: 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL---DIKADSIL 99
D ++VG G +G LR +G+ G + + D +P+ LSK A+S+
Sbjct: 3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLY 62
Query: 100 LRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRT 153
LRT + Y +I ++ G ++ + + +++ L DG ++D+ ++ LATG P
Sbjct: 63 LRTPDAYAAQNIQLLGGTQVTAI-NRDRQQVILSDGRALDYDRLVLATGGRPLI 115
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Score = 40.9 bits (94), Expect = 4e-04
Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Query: 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL---DIKADSIL 651
D ++VG G +G LR +G+ G + + D +P+ LSK A+S+
Sbjct: 3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLY 62
Query: 652 LRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRT 705
LRT + Y +I ++ G ++ + + +++ L DG ++D+ ++ LATG P
Sbjct: 63 LRTPDAYAAQNIQLLGGTQVTAI-NRDRQQVILSDGRALDYDRLVLATGGRPLI 115
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Score = 40.9 bits (94), Expect = 4e-04
Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Query: 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL---DIKADSIL 1122
D ++VG G +G LR +G+ G + + D +P+ LSK A+S+
Sbjct: 3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLY 62
Query: 1123 LRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRT 1176
LRT + Y +I ++ G ++ + + +++ L DG ++D+ ++ LATG P
Sbjct: 63 LRTPDAYAAQNIQLLGGTQVTAI-NRDRQQVILSDGRALDYDRLVLATGGRPLI 115
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.6 bits (166), Expect = 3e-13
Identities = 39/183 (21%), Positives = 74/183 (40%), Gaps = 35/183 (19%)
Query: 45 TFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSK--------------- 89
F+++GGG + ++R ++ ++++ LPY R LSK
Sbjct: 6 PFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLR 65
Query: 90 --QLDIKADSILLRTEEFY---------KDNDIHVIKGKKIISDSELNEKKIKLQDGTSI 138
Q + K SI + FY ++ + V+ GKK++ ++ + +KL DG+ I
Sbjct: 66 FKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQL-DVRDNMVKLNDGSQI 124
Query: 139 DFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA 198
+ K +ATG + + A + + + + SN+ V G +AA
Sbjct: 125 TYEKCLIATGGTEPNVELAK--TGGLEIDSDFGGFRVNAELQARSNIWVAG------DAA 176
Query: 199 AFC 201
F
Sbjct: 177 CFY 179
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.6 bits (166), Expect = 3e-13
Identities = 39/183 (21%), Positives = 74/183 (40%), Gaps = 35/183 (19%)
Query: 597 TFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSK--------------- 641
F+++GGG + ++R ++ ++++ LPY R LSK
Sbjct: 6 PFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLR 65
Query: 642 --QLDIKADSILLRTEEFY---------KDNDIHVIKGKKIISDSELNEKKIKLQDGTSI 690
Q + K SI + FY ++ + V+ GKK++ ++ + +KL DG+ I
Sbjct: 66 FKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQL-DVRDNMVKLNDGSQI 124
Query: 691 DFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA 750
+ K +ATG + + A + + + + SN+ V G +AA
Sbjct: 125 TYEKCLIATGGTEPNVELAK--TGGLEIDSDFGGFRVNAELQARSNIWVAG------DAA 176
Query: 751 AFC 753
F
Sbjct: 177 CFY 179
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.6 bits (166), Expect = 3e-13
Identities = 39/183 (21%), Positives = 74/183 (40%), Gaps = 35/183 (19%)
Query: 1068 TFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSK--------------- 1112
F+++GGG + ++R ++ ++++ LPY R LSK
Sbjct: 6 PFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLR 65
Query: 1113 --QLDIKADSILLRTEEFY---------KDNDIHVIKGKKIISDSELNEKKIKLQDGTSI 1161
Q + K SI + FY ++ + V+ GKK++ ++ + +KL DG+ I
Sbjct: 66 FKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQL-DVRDNMVKLNDGSQI 124
Query: 1162 DFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAA 1221
+ K +ATG + + A + + + + SN+ V G +AA
Sbjct: 125 TYEKCLIATGGTEPNVELAK--TGGLEIDSDFGGFRVNAELQARSNIWVAG------DAA 176
Query: 1222 AFC 1224
F
Sbjct: 177 CFY 179
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.5 bits (114), Expect = 1e-06
Identities = 37/221 (16%), Positives = 62/221 (28%), Gaps = 49/221 (22%)
Query: 176 APHITPESNVVVIGSSFIGMEAAAFCASKVK--SVTVVGRGAVP---------------- 217
AP P ++IG AA ++ V +V
Sbjct: 1 APSHVP---FLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDD 57
Query: 218 --------FQESLGKE-----------VGERITKLFESKGVKFVMKANVSSFEKNEKNDV 258
F++ GKE V + E+ GV + V + +
Sbjct: 58 PNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNM-- 115
Query: 259 TAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGV--ELNGQKAVVVNEYLETNVPGVYAG 316
L++G+ I + ++ G L G + VN L+ ++
Sbjct: 116 --VKLNDGSQITYEKCLIATGGTEPNVELAKTGGLEIDSDFGGFRVNAELQAR-SNIWVA 172
Query: 317 GDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS 357
GD A + H+ A GR+A NM
Sbjct: 173 GDAACFY--DIKLGRRRVEHHDHAVVSGRLAGENMTGAAKP 211
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.5 bits (114), Expect = 1e-06
Identities = 37/221 (16%), Positives = 62/221 (28%), Gaps = 49/221 (22%)
Query: 728 APHITPESNVVVIGSSFIGMEAAAFCASKVK--SVTVVGRGAVP---------------- 769
AP P ++IG AA ++ V +V
Sbjct: 1 APSHVP---FLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDD 57
Query: 770 --------FQESLGKE-----------VGERITKLFESKGVKFVMKANVSSFEKNEKNDV 810
F++ GKE V + E+ GV + V + +
Sbjct: 58 PNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNM-- 115
Query: 811 TAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGV--ELNGQKAVVVNEYLETNVPGVYAG 868
L++G+ I + ++ G L G + VN L+ ++
Sbjct: 116 --VKLNDGSQITYEKCLIATGGTEPNVELAKTGGLEIDSDFGGFRVNAELQAR-SNIWVA 172
Query: 869 GDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS 909
GD A + H+ A GR+A NM
Sbjct: 173 GDAACFY--DIKLGRRRVEHHDHAVVSGRLAGENMTGAAKP 211
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.5 bits (114), Expect = 1e-06
Identities = 37/221 (16%), Positives = 62/221 (28%), Gaps = 49/221 (22%)
Query: 1199 APHITPESNVVVIGSSFIGMEAAAFCASKVK--SVTVVGRGAVP---------------- 1240
AP P ++IG AA ++ V +V
Sbjct: 1 APSHVP---FLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDD 57
Query: 1241 --------FQESLGKE-----------VGERITKLFESKGVKFVMKANVSSFEKNEKNDV 1281
F++ GKE V + E+ GV + V + +
Sbjct: 58 PNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNM-- 115
Query: 1282 TAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGV--ELNGQKAVVVNEYLETNVPGVYAG 1339
L++G+ I + ++ G L G + VN L+ ++
Sbjct: 116 --VKLNDGSQITYEKCLIATGGTEPNVELAKTGGLEIDSDFGGFRVNAELQAR-SNIWVA 172
Query: 1340 GDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS 1380
GD A + H+ A GR+A NM
Sbjct: 173 GDAACFY--DIKLGRRRVEHHDHAVVSGRLAGENMTGAAKP 211
|
| >d1q1ra3 d.87.1.1 (A:320-422) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 103 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Score = 62.5 bits (152), Expect = 2e-12
Identities = 18/78 (23%), Positives = 39/78 (50%)
Query: 1384 IPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTVGMDPLAAQ 1443
P+FW+ + +G + G + G+ ++ + G L F+ +Y D+VLA+ TV Q
Sbjct: 7 APWFWSDQYEIGLKMVGLSEGYDRIIVRGSLAQPDFSVFYLQGDRVLAVDTVNRPVEFNQ 66
Query: 1444 FAERIKMQKYIQKDQIEN 1461
+ I + ++ + + +
Sbjct: 67 SKQIITDRLPVEPNLLGD 84
|
| >d1q1ra3 d.87.1.1 (A:320-422) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 103 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Score = 59.1 bits (143), Expect = 4e-11
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 361 IPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTVGMDP 416
P+FW+ + +G + G + G+ ++ + G L F+ +Y D+VLA+ TV
Sbjct: 7 APWFWSDQYEIGLKMVGLSEGYDRIIVRGSLAQPDFSVFYLQGDRVLAVDTVNRPV 62
|
| >d1q1ra3 d.87.1.1 (A:320-422) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 103 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Score = 59.1 bits (143), Expect = 4e-11
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 913 IPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTVGMDP 968
P+FW+ + +G + G + G+ ++ + G L F+ +Y D+VLA+ TV
Sbjct: 7 APWFWSDQYEIGLKMVGLSEGYDRIIVRGSLAQPDFSVFYLQGDRVLAVDTVNRPV 62
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Score = 63.7 bits (153), Expect = 8e-12
Identities = 37/194 (19%), Positives = 62/194 (31%), Gaps = 23/194 (11%)
Query: 185 VVVIGSSFIGMEAAAFCASKVK--SVTVVGRGAVPFQESLG------------KEVGERI 230
V+V+GSS G EA + + +G S G V
Sbjct: 3 VIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMT 62
Query: 231 TKLFESKGVKFVMKANVSSFEKNE-KNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDG 289
+ ES+GV +++ + E + V D +I+ G V
Sbjct: 63 GEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDGVR 122
Query: 290 KGVELNGQK-------AVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQY 342
+ +EY+ T+ P V+A GD ++ + +I A+
Sbjct: 123 PNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIK-YNPADTEVNIALATNARK 181
Query: 343 HGRIAALNMVEKKT 356
GR A N+ E
Sbjct: 182 QGRFAVKNLEEPVK 195
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Score = 63.7 bits (153), Expect = 8e-12
Identities = 37/194 (19%), Positives = 62/194 (31%), Gaps = 23/194 (11%)
Query: 737 VVVIGSSFIGMEAAAFCASKVK--SVTVVGRGAVPFQESLG------------KEVGERI 782
V+V+GSS G EA + + +G S G V
Sbjct: 3 VIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMT 62
Query: 783 TKLFESKGVKFVMKANVSSFEKNE-KNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDG 841
+ ES+GV +++ + E + V D +I+ G V
Sbjct: 63 GEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDGVR 122
Query: 842 KGVELNGQK-------AVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQY 894
+ +EY+ T+ P V+A GD ++ + +I A+
Sbjct: 123 PNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIK-YNPADTEVNIALATNARK 181
Query: 895 HGRIAALNMVEKKT 908
GR A N+ E
Sbjct: 182 QGRFAVKNLEEPVK 195
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Score = 63.7 bits (153), Expect = 8e-12
Identities = 37/194 (19%), Positives = 62/194 (31%), Gaps = 23/194 (11%)
Query: 1208 VVVIGSSFIGMEAAAFCASKVK--SVTVVGRGAVPFQESLG------------KEVGERI 1253
V+V+GSS G EA + + +G S G V
Sbjct: 3 VIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMT 62
Query: 1254 TKLFESKGVKFVMKANVSSFEKNE-KNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDG 1312
+ ES+GV +++ + E + V D +I+ G V
Sbjct: 63 GEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDGVR 122
Query: 1313 KGVELNGQK-------AVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQY 1365
+ +EY+ T+ P V+A GD ++ + +I A+
Sbjct: 123 PNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIK-YNPADTEVNIALATNARK 181
Query: 1366 HGRIAALNMVEKKT 1379
GR A N+ E
Sbjct: 182 QGRFAVKNLEEPVK 195
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Score = 41.8 bits (96), Expect = 2e-04
Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 3/71 (4%)
Query: 47 IVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL---DIKADSILLRTE 103
IV+G G VE L ++ + +F+ + + L +S+ T
Sbjct: 4 IVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTG 63
Query: 104 EFYKDNDIHVI 114
E + ++V
Sbjct: 64 EKMESRGVNVF 74
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Score = 41.8 bits (96), Expect = 2e-04
Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 3/71 (4%)
Query: 599 IVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL---DIKADSILLRTE 655
IV+G G VE L ++ + +F+ + + L +S+ T
Sbjct: 4 IVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTG 63
Query: 656 EFYKDNDIHVI 666
E + ++V
Sbjct: 64 EKMESRGVNVF 74
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Score = 41.8 bits (96), Expect = 2e-04
Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 3/71 (4%)
Query: 1070 IVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQL---DIKADSILLRTE 1126
IV+G G VE L ++ + +F+ + + L +S+ T
Sbjct: 4 IVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTG 63
Query: 1127 EFYKDNDIHVI 1137
E + ++V
Sbjct: 64 EKMESRGVNVF 74
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 64.1 bits (155), Expect = 1e-11
Identities = 44/232 (18%), Positives = 79/232 (34%), Gaps = 73/232 (31%)
Query: 182 ESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP------------------------ 217
E+ +V+G+ G AA A + VT+V +G +
Sbjct: 3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQA 62
Query: 218 ---------------FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNE-----KND 257
+ + + KL + GV+ ++K N K E N
Sbjct: 63 KHSEEMGIKAENVTIDFAKVQEWKASVVKKL--TGGVEGLLKGNKVEIVKGEAYFVDANT 120
Query: 258 VTAANLDNGTTIPADLVIVG--------IGTVLNTN--YLDGKGVELNGQKAVVVNEYLE 307
V N D+ T I+ +G NT+ L+ G+++ + + V++
Sbjct: 121 VRVVNGDSAQTYTFKNAIIATGSRPIELVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCR 180
Query: 308 TNVPGVYAGGDIAYAPLHSFYNKNASIGHYQL---AQYHGRIAALNMVEKKT 356
T+VP ++A GDI + L A Y G++AA + +
Sbjct: 181 TSVPNIFAIGDI--------------VPGPALAHKASYEGKVAAEAIAGHPS 218
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 64.1 bits (155), Expect = 1e-11
Identities = 44/232 (18%), Positives = 79/232 (34%), Gaps = 73/232 (31%)
Query: 734 ESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP------------------------ 769
E+ +V+G+ G AA A + VT+V +G +
Sbjct: 3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQA 62
Query: 770 ---------------FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNE-----KND 809
+ + + KL + GV+ ++K N K E N
Sbjct: 63 KHSEEMGIKAENVTIDFAKVQEWKASVVKKL--TGGVEGLLKGNKVEIVKGEAYFVDANT 120
Query: 810 VTAANLDNGTTIPADLVIVG--------IGTVLNTN--YLDGKGVELNGQKAVVVNEYLE 859
V N D+ T I+ +G NT+ L+ G+++ + + V++
Sbjct: 121 VRVVNGDSAQTYTFKNAIIATGSRPIELVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCR 180
Query: 860 TNVPGVYAGGDIAYAPLHSFYNKNASIGHYQL---AQYHGRIAALNMVEKKT 908
T+VP ++A GDI + L A Y G++AA + +
Sbjct: 181 TSVPNIFAIGDI--------------VPGPALAHKASYEGKVAAEAIAGHPS 218
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 64.1 bits (155), Expect = 1e-11
Identities = 44/232 (18%), Positives = 79/232 (34%), Gaps = 73/232 (31%)
Query: 1205 ESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP------------------------ 1240
E+ +V+G+ G AA A + VT+V +G +
Sbjct: 3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQA 62
Query: 1241 ---------------FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNE-----KND 1280
+ + + KL + GV+ ++K N K E N
Sbjct: 63 KHSEEMGIKAENVTIDFAKVQEWKASVVKKL--TGGVEGLLKGNKVEIVKGEAYFVDANT 120
Query: 1281 VTAANLDNGTTIPADLVIVG--------IGTVLNTN--YLDGKGVELNGQKAVVVNEYLE 1330
V N D+ T I+ +G NT+ L+ G+++ + + V++
Sbjct: 121 VRVVNGDSAQTYTFKNAIIATGSRPIELVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCR 180
Query: 1331 TNVPGVYAGGDIAYAPLHSFYNKNASIGHYQL---AQYHGRIAALNMVEKKT 1379
T+VP ++A GDI + L A Y G++AA + +
Sbjct: 181 TSVPNIFAIGDI--------------VPGPALAHKASYEGKVAAEAIAGHPS 218
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 122 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 59.3 bits (143), Expect = 5e-11
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 9/103 (8%)
Query: 184 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVM 243
+V+G+S++ +E A F A VTV+ R +++ +I + E G+KF+
Sbjct: 22 KTLVVGASYVALECAGFLAGIGLDVTVMVR--SILLRGFDQDMANKIGEHMEEHGIKFIR 79
Query: 244 KANVSSFEKNEKND-----VTAANLDNGTTI--PADLVIVGIG 279
+ + E+ E VTA + ++ TI + V++ +G
Sbjct: 80 QFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG 122
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 122 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 59.3 bits (143), Expect = 5e-11
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 9/103 (8%)
Query: 736 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVM 795
+V+G+S++ +E A F A VTV+ R +++ +I + E G+KF+
Sbjct: 22 KTLVVGASYVALECAGFLAGIGLDVTVMVR--SILLRGFDQDMANKIGEHMEEHGIKFIR 79
Query: 796 KANVSSFEKNEKND-----VTAANLDNGTTI--PADLVIVGIG 831
+ + E+ E VTA + ++ TI + V++ +G
Sbjct: 80 QFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG 122
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 122 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 59.3 bits (143), Expect = 5e-11
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 9/103 (8%)
Query: 1207 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVM 1266
+V+G+S++ +E A F A VTV+ R +++ +I + E G+KF+
Sbjct: 22 KTLVVGASYVALECAGFLAGIGLDVTVMVR--SILLRGFDQDMANKIGEHMEEHGIKFIR 79
Query: 1267 KANVSSFEKNEKND-----VTAANLDNGTTI--PADLVIVGIG 1302
+ + E+ E VTA + ++ TI + V++ +G
Sbjct: 80 QFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG 122
|
| >d1rfsa_ b.33.1.1 (A:) ISP subunit from chloroplast cytochrome bf complex {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 127 | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Rieske iron-sulfur protein (ISP) domain: ISP subunit from chloroplast cytochrome bf complex species: Spinach (Spinacia oleracea) [TaxId: 3562]
Score = 57.3 bits (138), Expect = 3e-10
Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Query: 506 NIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQN 565
+ + C+H G + + + + CP HG+ +N G + P SL + +
Sbjct: 47 ATFGINAVCTHLGCVVPFNA-AENKFICPCHGSQYN-NQGRVVRGPAPLSLALAHCDVDD 104
Query: 566 DDSVVVQ 572
V V
Sbjct: 105 GKVVFVP 111
|
| >d1rfsa_ b.33.1.1 (A:) ISP subunit from chloroplast cytochrome bf complex {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 127 | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Rieske iron-sulfur protein (ISP) domain: ISP subunit from chloroplast cytochrome bf complex species: Spinach (Spinacia oleracea) [TaxId: 3562]
Score = 57.3 bits (138), Expect = 3e-10
Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Query: 977 NIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQN 1036
+ + C+H G + + + + CP HG+ +N G + P SL + +
Sbjct: 47 ATFGINAVCTHLGCVVPFNA-AENKFICPCHGSQYN-NQGRVVRGPAPLSLALAHCDVDD 104
Query: 1037 DDSVVVQ 1043
V V
Sbjct: 105 GKVVFVP 111
|
| >d1fqta_ b.33.1.1 (A:) Rieske-type ferredoxin associated with biphenyl dioxygenase {Burkholderia cepacia [TaxId: 292]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Rieske iron-sulfur protein (ISP) domain: Rieske-type ferredoxin associated with biphenyl dioxygenase species: Burkholderia cepacia [TaxId: 292]
Score = 56.6 bits (136), Expect = 3e-10
Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 962 LTVGMDPLAAQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRC-PWHGACFNIATGDIED 1020
+ G +A + ++A +C+H L G +G V H F + TG ++
Sbjct: 20 VESGGTSVAIFNVDGELFATQDRCTHGDWSLSDGGYLEGDVVECSLHMGKFCVRTGKVKS 79
Query: 1021 FPGMDSLPCYKVTIQNDDSVVVQARKDEL 1049
P ++L + + I+++D V+V L
Sbjct: 80 PPPCEALKIFPIRIEDND-VLVDFEAGYL 107
|
| >d1fqta_ b.33.1.1 (A:) Rieske-type ferredoxin associated with biphenyl dioxygenase {Burkholderia cepacia [TaxId: 292]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Rieske iron-sulfur protein (ISP) domain: Rieske-type ferredoxin associated with biphenyl dioxygenase species: Burkholderia cepacia [TaxId: 292]
Score = 54.3 bits (130), Expect = 2e-09
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 506 NIYAVGTKCSHYGAPLVKGSLGDGRVRC-PWHGACFNIATGDIEDFPGMDSLPCYKVTIQ 564
++A +C+H L G +G V H F + TG ++ P ++L + + I+
Sbjct: 35 ELFATQDRCTHGDWSLSDGGYLEGDVVECSLHMGKFCVRTGKVKSPPPCEALKIFPIRIE 94
Query: 565 NDDSVVVQARKDEL 578
++D V+V L
Sbjct: 95 DND-VLVDFEAGYL 107
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Score = 59.2 bits (142), Expect = 7e-10
Identities = 40/234 (17%), Positives = 66/234 (28%), Gaps = 70/234 (29%)
Query: 182 ESNVVVIGSSFIGMEAAAFCASKVKSVTVV-----------GRGAVP------------- 217
E + + IG G +A+ + +V VP
Sbjct: 42 EYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELML 101
Query: 218 FQESLGKEVGERITKLFESKGVKFVMKANVSS-------------------FEKNEKNDV 258
+ G+ +T+ + + K
Sbjct: 102 ARTFSGQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVID 161
Query: 259 TAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQK----------AVVVNEYLET 308
G A +I+ +G T + + K V+VNEYL+T
Sbjct: 162 NHTVEAAGKVFKAKNLILAVGAGPGTLDVPEQPRSAELAKILGLDLGPKGEVLVNEYLQT 221
Query: 309 NVPGVYAGGDIAYAPLHSFYNKNASIGHYQL---AQYHGRIAALNMVEKKTSLS 359
+VP VYA GD+ IG A+ G AA N++ +K S +
Sbjct: 222 SVPNVYAVGDL--------------IGGPMEMFKARKSGCYAARNVMGEKISYT 261
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Score = 59.2 bits (142), Expect = 7e-10
Identities = 40/234 (17%), Positives = 66/234 (28%), Gaps = 70/234 (29%)
Query: 734 ESNVVVIGSSFIGMEAAAFCASKVKSVTVV-----------GRGAVP------------- 769
E + + IG G +A+ + +V VP
Sbjct: 42 EYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELML 101
Query: 770 FQESLGKEVGERITKLFESKGVKFVMKANVSS-------------------FEKNEKNDV 810
+ G+ +T+ + + K
Sbjct: 102 ARTFSGQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVID 161
Query: 811 TAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQK----------AVVVNEYLET 860
G A +I+ +G T + + K V+VNEYL+T
Sbjct: 162 NHTVEAAGKVFKAKNLILAVGAGPGTLDVPEQPRSAELAKILGLDLGPKGEVLVNEYLQT 221
Query: 861 NVPGVYAGGDIAYAPLHSFYNKNASIGHYQL---AQYHGRIAALNMVEKKTSLS 911
+VP VYA GD+ IG A+ G AA N++ +K S +
Sbjct: 222 SVPNVYAVGDL--------------IGGPMEMFKARKSGCYAARNVMGEKISYT 261
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Score = 59.2 bits (142), Expect = 7e-10
Identities = 40/234 (17%), Positives = 66/234 (28%), Gaps = 70/234 (29%)
Query: 1205 ESNVVVIGSSFIGMEAAAFCASKVKSVTVV-----------GRGAVP------------- 1240
E + + IG G +A+ + +V VP
Sbjct: 42 EYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELML 101
Query: 1241 FQESLGKEVGERITKLFESKGVKFVMKANVSS-------------------FEKNEKNDV 1281
+ G+ +T+ + + K
Sbjct: 102 ARTFSGQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVID 161
Query: 1282 TAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQK----------AVVVNEYLET 1331
G A +I+ +G T + + K V+VNEYL+T
Sbjct: 162 NHTVEAAGKVFKAKNLILAVGAGPGTLDVPEQPRSAELAKILGLDLGPKGEVLVNEYLQT 221
Query: 1332 NVPGVYAGGDIAYAPLHSFYNKNASIGHYQL---AQYHGRIAALNMVEKKTSLS 1382
+VP VYA GD+ IG A+ G AA N++ +K S +
Sbjct: 222 SVPNVYAVGDL--------------IGGPMEMFKARKSGCYAARNVMGEKISYT 261
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Score = 56.8 bits (136), Expect = 8e-10
Identities = 22/161 (13%), Positives = 43/161 (26%), Gaps = 12/161 (7%)
Query: 146 ATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCAS 203
G++ T G + L T E + I ++ + F+ A A+
Sbjct: 4 TDGTNCLTHDPIPGADASLPDQL-TPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLAT 62
Query: 204 KVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANL 263
VT+V + + + V+ + S E +
Sbjct: 63 AGHEVTIVSGVHLANY-MHFTLEYPNMMRRLHELHVEELGDHFCSRIEPGR------MEI 115
Query: 264 DNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNE 304
N + G G + +E + V+V
Sbjct: 116 YNIWGDGSKRTYRGPGVSPRDANTSHRWIEFD--SLVLVTG 154
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Score = 56.8 bits (136), Expect = 8e-10
Identities = 22/161 (13%), Positives = 43/161 (26%), Gaps = 12/161 (7%)
Query: 698 ATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCAS 755
G++ T G + L T E + I ++ + F+ A A+
Sbjct: 4 TDGTNCLTHDPIPGADASLPDQL-TPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLAT 62
Query: 756 KVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANL 815
VT+V + + + V+ + S E +
Sbjct: 63 AGHEVTIVSGVHLANY-MHFTLEYPNMMRRLHELHVEELGDHFCSRIEPGR------MEI 115
Query: 816 DNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNE 856
N + G G + +E + V+V
Sbjct: 116 YNIWGDGSKRTYRGPGVSPRDANTSHRWIEFD--SLVLVTG 154
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Score = 56.8 bits (136), Expect = 8e-10
Identities = 22/161 (13%), Positives = 43/161 (26%), Gaps = 12/161 (7%)
Query: 1169 ATGSSPRTISQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCAS 1226
G++ T G + L T E + I ++ + F+ A A+
Sbjct: 4 TDGTNCLTHDPIPGADASLPDQL-TPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLAT 62
Query: 1227 KVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANL 1286
VT+V + + + V+ + S E +
Sbjct: 63 AGHEVTIVSGVHLANY-MHFTLEYPNMMRRLHELHVEELGDHFCSRIEPGR------MEI 115
Query: 1287 DNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNE 1327
N + G G + +E + V+V
Sbjct: 116 YNIWGDGSKRTYRGPGVSPRDANTSHRWIEFD--SLVLVTG 154
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Score = 55.5 bits (133), Expect = 1e-09
Identities = 15/94 (15%), Positives = 33/94 (35%), Gaps = 1/94 (1%)
Query: 185 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMK 244
+ ++GS +I +E + RG ++ + V + + + V
Sbjct: 25 IGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKF-DESVINVLENDMKKNNINIVTF 83
Query: 245 ANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 278
A+V +K +++ D D VI +
Sbjct: 84 ADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCV 117
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Score = 55.5 bits (133), Expect = 1e-09
Identities = 15/94 (15%), Positives = 33/94 (35%), Gaps = 1/94 (1%)
Query: 737 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMK 796
+ ++GS +I +E + RG ++ + V + + + V
Sbjct: 25 IGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKF-DESVINVLENDMKKNNINIVTF 83
Query: 797 ANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 830
A+V +K +++ D D VI +
Sbjct: 84 ADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCV 117
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Score = 55.5 bits (133), Expect = 1e-09
Identities = 15/94 (15%), Positives = 33/94 (35%), Gaps = 1/94 (1%)
Query: 1208 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMK 1267
+ ++GS +I +E + RG ++ + V + + + V
Sbjct: 25 IGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKF-DESVINVLENDMKKNNINIVTF 83
Query: 1268 ANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 1301
A+V +K +++ D D VI +
Sbjct: 84 ADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCV 117
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.0 bits (139), Expect = 1e-09
Identities = 37/226 (16%), Positives = 66/226 (29%), Gaps = 67/226 (29%)
Query: 185 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP--------------------------- 217
+VIG G+ +A A VV +
Sbjct: 6 YLVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDH 65
Query: 218 FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVT-------------AANLD 264
G+ ++ + K +V + N K+ +
Sbjct: 66 ADYGFPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEV 125
Query: 265 NGTTIPADLVIVGIGTVL--------NTNYL--DGKGVELNGQKAVVVNEYLETNVPGVY 314
+G A +++ G + NT L + G++ + + ++V+E+ TNV G+Y
Sbjct: 126 SGKKYTAPHILIATGGMPSTPHERVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIY 185
Query: 315 AGGDIAYAPLHSFYNKNASIGHYQLAQ---YHGRIAALNMVEKKTS 357
A GD+ G L GR A + E K
Sbjct: 186 AVGDV--------------CGKALLTPVAIAAGRKLAHRLFEYKED 217
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.0 bits (139), Expect = 1e-09
Identities = 37/226 (16%), Positives = 66/226 (29%), Gaps = 67/226 (29%)
Query: 737 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP--------------------------- 769
+VIG G+ +A A VV +
Sbjct: 6 YLVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDH 65
Query: 770 FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVT-------------AANLD 816
G+ ++ + K +V + N K+ +
Sbjct: 66 ADYGFPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEV 125
Query: 817 NGTTIPADLVIVGIGTVL--------NTNYL--DGKGVELNGQKAVVVNEYLETNVPGVY 866
+G A +++ G + NT L + G++ + + ++V+E+ TNV G+Y
Sbjct: 126 SGKKYTAPHILIATGGMPSTPHERVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIY 185
Query: 867 AGGDIAYAPLHSFYNKNASIGHYQLAQ---YHGRIAALNMVEKKTS 909
A GD+ G L GR A + E K
Sbjct: 186 AVGDV--------------CGKALLTPVAIAAGRKLAHRLFEYKED 217
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.0 bits (139), Expect = 1e-09
Identities = 37/226 (16%), Positives = 66/226 (29%), Gaps = 67/226 (29%)
Query: 1208 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP--------------------------- 1240
+VIG G+ +A A VV +
Sbjct: 6 YLVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDH 65
Query: 1241 FQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVT-------------AANLD 1287
G+ ++ + K +V + N K+ +
Sbjct: 66 ADYGFPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEV 125
Query: 1288 NGTTIPADLVIVGIGTVL--------NTNYL--DGKGVELNGQKAVVVNEYLETNVPGVY 1337
+G A +++ G + NT L + G++ + + ++V+E+ TNV G+Y
Sbjct: 126 SGKKYTAPHILIATGGMPSTPHERVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIY 185
Query: 1338 AGGDIAYAPLHSFYNKNASIGHYQLAQ---YHGRIAALNMVEKKTS 1380
A GD+ G L GR A + E K
Sbjct: 186 AVGDV--------------CGKALLTPVAIAAGRKLAHRLFEYKED 217
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 116 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Score = 55.2 bits (132), Expect = 1e-09
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 2/95 (2%)
Query: 185 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMK 244
V V+G+ +IG+E + P + E + ++ ++G +
Sbjct: 24 VAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSF-DPMISETLVEVMNAEGPQLHTN 82
Query: 245 ANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 279
A + KN +T L++G + D +I IG
Sbjct: 83 AIPKAVVKNTDGSLTL-ELEDGRSETVDCLIWAIG 116
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 116 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Score = 55.2 bits (132), Expect = 1e-09
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 2/95 (2%)
Query: 737 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMK 796
V V+G+ +IG+E + P + E + ++ ++G +
Sbjct: 24 VAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSF-DPMISETLVEVMNAEGPQLHTN 82
Query: 797 ANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 831
A + KN +T L++G + D +I IG
Sbjct: 83 AIPKAVVKNTDGSLTL-ELEDGRSETVDCLIWAIG 116
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 116 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Score = 55.2 bits (132), Expect = 1e-09
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 2/95 (2%)
Query: 1208 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMK 1267
V V+G+ +IG+E + P + E + ++ ++G +
Sbjct: 24 VAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSF-DPMISETLVEVMNAEGPQLHTN 82
Query: 1268 ANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 1302
A + KN +T L++G + D +I IG
Sbjct: 83 AIPKAVVKNTDGSLTL-ELEDGRSETVDCLIWAIG 116
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Score = 55.5 bits (132), Expect = 3e-09
Identities = 30/174 (17%), Positives = 52/174 (29%), Gaps = 15/174 (8%)
Query: 183 SNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAV-----PFQESLGKEVGERITKLFESK 237
S VV++G+ G E A + + VTV+ + V P R S
Sbjct: 1 SKVVIVGNGPGGFELAKQLSQTYE-VTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSL 59
Query: 238 GVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQ 297
+ E+ + D + +V N + G+
Sbjct: 60 DWYRKRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPNVDLARRSGIHTGRG 119
Query: 298 KAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNM 351
++++ T+ VYA GD A G + A R+ A +
Sbjct: 120 I--LIDDNFRTSAKDVYAIGDCAEYS-------GIIAGTAKAAMEQARVLADIL 164
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Score = 55.5 bits (132), Expect = 3e-09
Identities = 30/174 (17%), Positives = 52/174 (29%), Gaps = 15/174 (8%)
Query: 735 SNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAV-----PFQESLGKEVGERITKLFESK 789
S VV++G+ G E A + + VTV+ + V P R S
Sbjct: 1 SKVVIVGNGPGGFELAKQLSQTYE-VTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSL 59
Query: 790 GVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQ 849
+ E+ + D + +V N + G+
Sbjct: 60 DWYRKRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPNVDLARRSGIHTGRG 119
Query: 850 KAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNM 903
++++ T+ VYA GD A G + A R+ A +
Sbjct: 120 I--LIDDNFRTSAKDVYAIGDCAEYS-------GIIAGTAKAAMEQARVLADIL 164
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Score = 55.5 bits (132), Expect = 3e-09
Identities = 30/174 (17%), Positives = 52/174 (29%), Gaps = 15/174 (8%)
Query: 1206 SNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAV-----PFQESLGKEVGERITKLFESK 1260
S VV++G+ G E A + + VTV+ + V P R S
Sbjct: 1 SKVVIVGNGPGGFELAKQLSQTYE-VTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSL 59
Query: 1261 GVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQ 1320
+ E+ + D + +V N + G+
Sbjct: 60 DWYRKRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPNVDLARRSGIHTGRG 119
Query: 1321 KAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNM 1374
++++ T+ VYA GD A G + A R+ A +
Sbjct: 120 I--LIDDNFRTSAKDVYAIGDCAEYS-------GIIAGTAKAAMEQARVLADIL 164
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Score = 40.9 bits (94), Expect = 3e-04
Identities = 26/161 (16%), Positives = 57/161 (35%), Gaps = 8/161 (4%)
Query: 47 IVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFY 106
++VG GP G + L Q ++ I E Y + LS + L
Sbjct: 4 VIVGNGPGGFELAKQLSQT---YEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLD 60
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYL 166
+ + +K+ + + + + + LATG+ +++ G++ +
Sbjct: 61 WYRKRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPNVDLARRSGIHTGRGI 120
Query: 167 RTVEDANNIAPHI-----TPESNVVVIGSSFIGMEAAAFCA 202
++ A + E + ++ G++ ME A A
Sbjct: 121 LIDDNFRTSAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLA 161
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Score = 40.9 bits (94), Expect = 3e-04
Identities = 26/161 (16%), Positives = 57/161 (35%), Gaps = 8/161 (4%)
Query: 599 IVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFY 658
++VG GP G + L Q ++ I E Y + LS + L
Sbjct: 4 VIVGNGPGGFELAKQLSQT---YEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLD 60
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYL 718
+ + +K+ + + + + + LATG+ +++ G++ +
Sbjct: 61 WYRKRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPNVDLARRSGIHTGRGI 120
Query: 719 RTVEDANNIAPHI-----TPESNVVVIGSSFIGMEAAAFCA 754
++ A + E + ++ G++ ME A A
Sbjct: 121 LIDDNFRTSAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLA 161
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Score = 40.9 bits (94), Expect = 3e-04
Identities = 26/161 (16%), Positives = 57/161 (35%), Gaps = 8/161 (4%)
Query: 1070 IVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFY 1129
++VG GP G + L Q ++ I E Y + LS + L
Sbjct: 4 VIVGNGPGGFELAKQLSQT---YEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLD 60
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYL 1189
+ + +K+ + + + + + LATG+ +++ G++ +
Sbjct: 61 WYRKRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPNVDLARRSGIHTGRGI 120
Query: 1190 RTVEDANNIAPHI-----TPESNVVVIGSSFIGMEAAAFCA 1225
++ A + E + ++ G++ ME A A
Sbjct: 121 LIDDNFRTSAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLA 161
|
| >d1g8kb_ b.33.1.1 (B:) Arsenite oxidase Rieske subunit {Alcaligenes faecalis [TaxId: 511]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Rieske iron-sulfur protein (ISP) domain: Arsenite oxidase Rieske subunit species: Alcaligenes faecalis [TaxId: 511]
Score = 53.1 bits (127), Expect = 1e-08
Identities = 20/115 (17%), Positives = 32/115 (27%), Gaps = 6/115 (5%)
Query: 940 VGDLEALK----FTAYYSNADKVLAILTVGMDPLAAQFAERNIYAVGTKCSHYGAPLVKG 995
V + L + Y + + +G + +I A C+H G P
Sbjct: 11 VSVAKNLAANEPVSFTYPDTSSPCVAVKLGAPVPGGVGPDDDIVAYSVLCTHMGCPTSYD 70
Query: 996 SLGDGRVRCPWHGACFNIA-TGDIEDFPGMDSLPCYKVTIQNDDSVVVQARKDEL 1049
S CP H F+ G + LP + + D L
Sbjct: 71 S-SSKTFSCPCHFTEFDAEKAGQMICGEATADLPRVLLRYDAASDALTAVGVDGL 124
|
| >d1g8kb_ b.33.1.1 (B:) Arsenite oxidase Rieske subunit {Alcaligenes faecalis [TaxId: 511]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Rieske iron-sulfur protein (ISP) domain: Arsenite oxidase Rieske subunit species: Alcaligenes faecalis [TaxId: 511]
Score = 50.0 bits (119), Expect = 1e-07
Identities = 16/74 (21%), Positives = 22/74 (29%), Gaps = 2/74 (2%)
Query: 506 NIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIA-TGDIEDFPGMDSLPCYKVTIQ 564
+I A C+H G P S CP H F+ G + LP +
Sbjct: 52 DIVAYSVLCTHMGCPTSYDS-SSKTFSCPCHFTEFDAEKAGQMICGEATADLPRVLLRYD 110
Query: 565 NDDSVVVQARKDEL 578
+ D L
Sbjct: 111 AASDALTAVGVDGL 124
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 119 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Score = 52.5 bits (125), Expect = 1e-08
Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Query: 183 SNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFV 242
+ VIG+ IG+E + A VTV+ ++V + K+ +G+K +
Sbjct: 23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAV-DEQVAKEAQKILTKQGLKIL 81
Query: 243 MKANVSSFEKNEKN-DVTAANLDNGTTIPADLVIVGIG 279
+ A V+ E K V + + + D +IV +G
Sbjct: 82 LGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG 119
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 119 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Score = 52.5 bits (125), Expect = 1e-08
Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Query: 735 SNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFV 794
+ VIG+ IG+E + A VTV+ ++V + K+ +G+K +
Sbjct: 23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAV-DEQVAKEAQKILTKQGLKIL 81
Query: 795 MKANVSSFEKNEKN-DVTAANLDNGTTIPADLVIVGIG 831
+ A V+ E K V + + + D +IV +G
Sbjct: 82 LGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG 119
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 119 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Score = 52.5 bits (125), Expect = 1e-08
Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Query: 1206 SNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFV 1265
+ VIG+ IG+E + A VTV+ ++V + K+ +G+K +
Sbjct: 23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAV-DEQVAKEAQKILTKQGLKIL 81
Query: 1266 MKANVSSFEKNEKN-DVTAANLDNGTTIPADLVIVGIG 1302
+ A V+ E K V + + + D +IV +G
Sbjct: 82 LGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG 119
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Score = 51.7 bits (123), Expect = 2e-08
Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 3/98 (3%)
Query: 184 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGE--RITKLFESKGVKF 241
+ +G +I +E A + V G + ++T+ + G+
Sbjct: 20 RALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINV 79
Query: 242 VMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 279
N + KN + ++G D+V++ IG
Sbjct: 80 RTHENPAKVTKNA-DGTRHVVFESGAEADYDVVMLAIG 116
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Score = 51.7 bits (123), Expect = 2e-08
Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 3/98 (3%)
Query: 736 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGE--RITKLFESKGVKF 793
+ +G +I +E A + V G + ++T+ + G+
Sbjct: 20 RALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINV 79
Query: 794 VMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 831
N + KN + ++G D+V++ IG
Sbjct: 80 RTHENPAKVTKNA-DGTRHVVFESGAEADYDVVMLAIG 116
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Score = 51.7 bits (123), Expect = 2e-08
Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 3/98 (3%)
Query: 1207 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGE--RITKLFESKGVKF 1264
+ +G +I +E A + V G + ++T+ + G+
Sbjct: 20 RALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINV 79
Query: 1265 VMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 1302
N + KN + ++G D+V++ IG
Sbjct: 80 RTHENPAKVTKNA-DGTRHVVFESGAEADYDVVMLAIG 116
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.3 bits (132), Expect = 2e-08
Identities = 32/308 (10%), Positives = 64/308 (20%), Gaps = 53/308 (17%)
Query: 47 IVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFY 106
I+VG G SG + + +N K+ I
Sbjct: 54 IIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGG------------------------ 89
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYL 166
G ++ S + + I + D V
Sbjct: 90 -----GSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEG-------------DYVVVKHAA 131
Query: 167 RTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEV 226
+ + + + + V V +
Sbjct: 132 LFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCM 191
Query: 227 GERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY 286
+ +L K + ++ D IV I
Sbjct: 192 DPNVIELAGYKNDGTRDLSQK------HGVILSTTGHDGPFGAFCAKRIVDIDQNQKLGG 245
Query: 287 LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRI 346
+ G + + + VV++ V +Y G + G G
Sbjct: 246 MKGLDMN-HAEHDVVIHSGAYAGVDNMYFAGMEVAEL-DGLNRMGPTFGA---MALSGVH 300
Query: 347 AALNMVEK 354
AA +++
Sbjct: 301 AAEQILKH 308
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.3 bits (132), Expect = 2e-08
Identities = 32/308 (10%), Positives = 64/308 (20%), Gaps = 53/308 (17%)
Query: 599 IVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFY 658
I+VG G SG + + +N K+ I
Sbjct: 54 IIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGG------------------------ 89
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYL 718
G ++ S + + I + D V
Sbjct: 90 -----GSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEG-------------DYVVVKHAA 131
Query: 719 RTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEV 778
+ + + + + V V +
Sbjct: 132 LFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCM 191
Query: 779 GERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY 838
+ +L K + ++ D IV I
Sbjct: 192 DPNVIELAGYKNDGTRDLSQK------HGVILSTTGHDGPFGAFCAKRIVDIDQNQKLGG 245
Query: 839 LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRI 898
+ G + + + VV++ V +Y G + G G
Sbjct: 246 MKGLDMN-HAEHDVVIHSGAYAGVDNMYFAGMEVAEL-DGLNRMGPTFGA---MALSGVH 300
Query: 899 AALNMVEK 906
AA +++
Sbjct: 301 AAEQILKH 308
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.3 bits (132), Expect = 2e-08
Identities = 32/308 (10%), Positives = 64/308 (20%), Gaps = 53/308 (17%)
Query: 1070 IVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFY 1129
I+VG G SG + + +N K+ I
Sbjct: 54 IIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGG------------------------ 89
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYL 1189
G ++ S + + I + D V
Sbjct: 90 -----GSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEG-------------DYVVVKHAA 131
Query: 1190 RTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEV 1249
+ + + + + V V +
Sbjct: 132 LFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCM 191
Query: 1250 GERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY 1309
+ +L K + ++ D IV I
Sbjct: 192 DPNVIELAGYKNDGTRDLSQK------HGVILSTTGHDGPFGAFCAKRIVDIDQNQKLGG 245
Query: 1310 LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRI 1369
+ G + + + VV++ V +Y G + G G
Sbjct: 246 MKGLDMN-HAEHDVVIHSGAYAGVDNMYFAGMEVAEL-DGLNRMGPTFGA---MALSGVH 300
Query: 1370 AALNMVEK 1377
AA +++
Sbjct: 301 AAEQILKH 308
|
| >d1nyka_ b.33.1.1 (A:) Soluble Rieske protein {Thermus thermophilus [TaxId: 274]} Length = 156 | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Rieske iron-sulfur protein (ISP) domain: Soluble Rieske protein species: Thermus thermophilus [TaxId: 274]
Score = 52.8 bits (126), Expect = 2e-08
Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 2/84 (2%)
Query: 966 MDPLAAQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIAT-GDIEDFPGM 1024
+ P AQ A + A C+H G + + + CP HG +++ + P
Sbjct: 68 LAPEVAQHAAEGVVAYSAVCTHLGCIVSQWVADEEAALCPCHGGVYDLRHGAQVIAGPPP 127
Query: 1025 DSLPCYKVTIQNDDSVVVQARKDE 1048
+P V + D +V
Sbjct: 128 RPVPQLPVRV-EDGVLVAAGEFLG 150
|
| >d1nyka_ b.33.1.1 (A:) Soluble Rieske protein {Thermus thermophilus [TaxId: 274]} Length = 156 | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Rieske iron-sulfur protein (ISP) domain: Soluble Rieske protein species: Thermus thermophilus [TaxId: 274]
Score = 50.1 bits (119), Expect = 2e-07
Identities = 15/88 (17%), Positives = 28/88 (31%), Gaps = 3/88 (3%)
Query: 491 PASSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIAT-GDIED 549
P P+ + A C+H G + + + CP HG +++ +
Sbjct: 65 PEELAPEVAQH-AAEGVVAYSAVCTHLGCIVSQWVADEEAALCPCHGGVYDLRHGAQVIA 123
Query: 550 FPGMDSLPCYKVTIQNDDSVVVQARKDE 577
P +P V + D +V
Sbjct: 124 GPPPRPVPQLPVRV-EDGVLVAAGEFLG 150
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Score = 51.1 bits (121), Expect = 4e-08
Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 10/126 (7%)
Query: 159 GVNK--VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAV 216
GVN VF T+ + + P S VVV+G S +E F + + ++ R
Sbjct: 1 GVNAKGVFDHATLVEELDYEP----GSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRT-E 55
Query: 217 PFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKND---VTAANLDNGTTIPADL 273
P + E + + +G++ + +NV+ E++ V A + I D
Sbjct: 56 PLKLIKDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDF 115
Query: 274 VIVGIG 279
V +G+G
Sbjct: 116 VFLGLG 121
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Score = 51.1 bits (121), Expect = 4e-08
Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 10/126 (7%)
Query: 711 GVNK--VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAV 768
GVN VF T+ + + P S VVV+G S +E F + + ++ R
Sbjct: 1 GVNAKGVFDHATLVEELDYEP----GSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRT-E 55
Query: 769 PFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKND---VTAANLDNGTTIPADL 825
P + E + + +G++ + +NV+ E++ V A + I D
Sbjct: 56 PLKLIKDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDF 115
Query: 826 VIVGIG 831
V +G+G
Sbjct: 116 VFLGLG 121
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Score = 51.1 bits (121), Expect = 4e-08
Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 10/126 (7%)
Query: 1182 GVNK--VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAV 1239
GVN VF T+ + + P S VVV+G S +E F + + ++ R
Sbjct: 1 GVNAKGVFDHATLVEELDYEP----GSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRT-E 55
Query: 1240 PFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKND---VTAANLDNGTTIPADL 1296
P + E + + +G++ + +NV+ E++ V A + I D
Sbjct: 56 PLKLIKDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDF 115
Query: 1297 VIVGIG 1302
V +G+G
Sbjct: 116 VFLGLG 121
|
| >d1vm9a_ b.33.1.1 (A:) Toluene-4-monooxygenase system protein C, TmoC {Pseudomonas mendocina [TaxId: 300]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Rieske iron-sulfur protein (ISP) domain: Toluene-4-monooxygenase system protein C, TmoC species: Pseudomonas mendocina [TaxId: 300]
Score = 50.0 bits (119), Expect = 6e-08
Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 965 GMDPLAAQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGM 1024
G + L E + A C H L +GS G + C H FN TG +
Sbjct: 24 GTEVLIVNSEEHGVKAYQAMCPHQEILLSEGSYEGGVITCRAHLWTFNDGTGHGINPDDA 83
Query: 1025 DSLPCYKVTIQNDD 1038
+L Y V ++ DD
Sbjct: 84 -ALAEYPVEVKGDD 96
|
| >d1vm9a_ b.33.1.1 (A:) Toluene-4-monooxygenase system protein C, TmoC {Pseudomonas mendocina [TaxId: 300]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Rieske iron-sulfur protein (ISP) domain: Toluene-4-monooxygenase system protein C, TmoC species: Pseudomonas mendocina [TaxId: 300]
Score = 48.9 bits (116), Expect = 1e-07
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 506 NIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQN 565
+ A C H L +GS G + C H FN TG + +L Y V ++
Sbjct: 36 GVKAYQAMCPHQEILLSEGSYEGGVITCRAHLWTFNDGTGHGINPDDA-ALAEYPVEVKG 94
Query: 566 DD 567
DD
Sbjct: 95 DD 96
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Score = 50.2 bits (119), Expect = 7e-08
Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 5/97 (5%)
Query: 185 VVVIGSSFIGMEAAAFC---ASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKF 241
V+ +G FI +E A K VT+ RG + + + E +TK + G++
Sbjct: 23 VLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGF-DHTLREELTKQLTANGIQI 81
Query: 242 VMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 278
+ K N + E N + ++G + DLV++ I
Sbjct: 82 LTKENPAKVELNADGSKSV-TFESGKKMDFDLVMMAI 117
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Score = 50.2 bits (119), Expect = 7e-08
Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 5/97 (5%)
Query: 737 VVVIGSSFIGMEAAAFC---ASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKF 793
V+ +G FI +E A K VT+ RG + + + E +TK + G++
Sbjct: 23 VLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGF-DHTLREELTKQLTANGIQI 81
Query: 794 VMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 830
+ K N + E N + ++G + DLV++ I
Sbjct: 82 LTKENPAKVELNADGSKSV-TFESGKKMDFDLVMMAI 117
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Score = 50.2 bits (119), Expect = 7e-08
Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 5/97 (5%)
Query: 1208 VVVIGSSFIGMEAAAFC---ASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKF 1264
V+ +G FI +E A K VT+ RG + + + E +TK + G++
Sbjct: 23 VLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGF-DHTLREELTKQLTANGIQI 81
Query: 1265 VMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 1301
+ K N + E N + ++G + DLV++ I
Sbjct: 82 LTKENPAKVELNADGSKSV-TFESGKKMDFDLVMMAI 117
|
| >d1d7ya3 d.87.1.1 (A:309-405) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 97 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Score = 49.1 bits (117), Expect = 1e-07
Identities = 14/79 (17%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Query: 1384 IPFFWTMLFGVGFRFAGYAAGHTQ-VDIVGDLEALKFTAYYSNADKVLAILTVGMDPLAA 1442
+P++W+ + + AG A+G + V L+A KFT +++ V A
Sbjct: 8 LPWYWSDQGALRIQVAGLASGDEEIVRGEVSLDAPKFTLIELQKGRIVGATCVNNARDFA 67
Query: 1443 QFAERIKMQKYIQKDQIEN 1461
+ + + + +
Sbjct: 68 PLRRLLAVGAKPDRAALAD 86
|
| >d1d7ya3 d.87.1.1 (A:309-405) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 97 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Score = 47.9 bits (114), Expect = 2e-07
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 361 IPFFWTMLFGVGFRFAGYAAGHTQ-VDIVGDLEALKFTAYYSNADKVLAILTVGMDPLAA 419
+P++W+ + + AG A+G + V L+A KFT +++ V +
Sbjct: 8 LPWYWSDQGALRIQVAGLASGDEEIVRGEVSLDAPKFTLIELQKGRIVGATCVN-NARDF 66
Query: 420 QFAEQVLE 427
++L
Sbjct: 67 APLRRLLA 74
|
| >d1d7ya3 d.87.1.1 (A:309-405) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 97 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Score = 47.5 bits (113), Expect = 4e-07
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 913 IPFFWTMLFGVGFRFAGYAAGHTQ-VDIVGDLEALKFTAYYSNADKVLAILTVGM 966
+P++W+ + + AG A+G + V L+A KFT +++ V
Sbjct: 8 LPWYWSDQGALRIQVAGLASGDEEIVRGEVSLDAPKFTLIELQKGRIVGATCVNN 62
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Score = 51.1 bits (121), Expect = 3e-07
Identities = 23/138 (16%), Positives = 43/138 (31%), Gaps = 28/138 (20%)
Query: 233 LFESKGVKFVM-KANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY----- 286
+++G+ F + + N T+ + +++ G+
Sbjct: 113 FADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQHLGIEVPR 172
Query: 287 -----LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQL-- 339
L+ GVE+ A+ V+ Y +TNV +YA GD+ L
Sbjct: 173 SQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDV--------------TDRVMLTP 218
Query: 340 -AQYHGRIAALNMVEKKT 356
A G + K
Sbjct: 219 VAINEGAAFVDTVFANKP 236
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Score = 51.1 bits (121), Expect = 3e-07
Identities = 23/138 (16%), Positives = 43/138 (31%), Gaps = 28/138 (20%)
Query: 785 LFESKGVKFVM-KANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY----- 838
+++G+ F + + N T+ + +++ G+
Sbjct: 113 FADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQHLGIEVPR 172
Query: 839 -----LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQL-- 891
L+ GVE+ A+ V+ Y +TNV +YA GD+ L
Sbjct: 173 SQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDV--------------TDRVMLTP 218
Query: 892 -AQYHGRIAALNMVEKKT 908
A G + K
Sbjct: 219 VAINEGAAFVDTVFANKP 236
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Score = 51.1 bits (121), Expect = 3e-07
Identities = 23/138 (16%), Positives = 43/138 (31%), Gaps = 28/138 (20%)
Query: 1256 LFESKGVKFVM-KANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY----- 1309
+++G+ F + + N T+ + +++ G+
Sbjct: 113 FADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQHLGIEVPR 172
Query: 1310 -----LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQL-- 1362
L+ GVE+ A+ V+ Y +TNV +YA GD+ L
Sbjct: 173 SQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDV--------------TDRVMLTP 218
Query: 1363 -AQYHGRIAALNMVEKKT 1379
A G + K
Sbjct: 219 VAINEGAAFVDTVFANKP 236
|
| >d2jo6a1 b.33.1.3 (A:1-108) NADH-nitrite reductase small subunit NirD {Escherichia coli [TaxId: 562]} Length = 108 | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: NirD-like domain: NADH-nitrite reductase small subunit NirD species: Escherichia coli [TaxId: 562]
Score = 48.2 bits (114), Expect = 3e-07
Identities = 9/71 (12%), Positives = 27/71 (38%), Gaps = 7/71 (9%)
Query: 507 IYAVGTKCSHYGAPL-----VKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKV 561
++A+ + + + + G+ V P F ++ G + S+ Y+
Sbjct: 39 VFAISNIDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLSDGLCMEDEQF-SVKHYEA 97
Query: 562 TIQNDDSVVVQ 572
+++ V ++
Sbjct: 98 RVKDGV-VQLR 107
|
| >d2jo6a1 b.33.1.3 (A:1-108) NADH-nitrite reductase small subunit NirD {Escherichia coli [TaxId: 562]} Length = 108 | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: NirD-like domain: NADH-nitrite reductase small subunit NirD species: Escherichia coli [TaxId: 562]
Score = 48.2 bits (114), Expect = 3e-07
Identities = 9/71 (12%), Positives = 27/71 (38%), Gaps = 7/71 (9%)
Query: 978 IYAVGTKCSHYGAPL-----VKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKV 1032
++A+ + + + + G+ V P F ++ G + S+ Y+
Sbjct: 39 VFAISNIDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLSDGLCMEDEQF-SVKHYEA 97
Query: 1033 TIQNDDSVVVQ 1043
+++ V ++
Sbjct: 98 RVKDGV-VQLR 107
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 115 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Score = 47.5 bits (112), Expect = 5e-07
Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 3/96 (3%)
Query: 184 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVM 243
++VV+G +IG+E V+VV E+ + + + G+ +
Sbjct: 23 HLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTY-DSELTAPVAESLKKLGIALHL 81
Query: 244 KANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 279
+V +E + + AD V+V +G
Sbjct: 82 GHSVEGYENGCL--LANDGKGGQLRLEADRVLVAVG 115
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 115 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Score = 47.5 bits (112), Expect = 5e-07
Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 3/96 (3%)
Query: 736 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVM 795
++VV+G +IG+E V+VV E+ + + + G+ +
Sbjct: 23 HLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTY-DSELTAPVAESLKKLGIALHL 81
Query: 796 KANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 831
+V +E + + AD V+V +G
Sbjct: 82 GHSVEGYENGCL--LANDGKGGQLRLEADRVLVAVG 115
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 115 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Score = 47.5 bits (112), Expect = 5e-07
Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 3/96 (3%)
Query: 1207 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVM 1266
++VV+G +IG+E V+VV E+ + + + G+ +
Sbjct: 23 HLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTY-DSELTAPVAESLKKLGIALHL 81
Query: 1267 KANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 1302
+V +E + + AD V+V +G
Sbjct: 82 GHSVEGYENGCL--LANDGKGGQLRLEADRVLVAVG 115
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Score = 49.8 bits (117), Expect = 7e-07
Identities = 35/193 (18%), Positives = 67/193 (34%), Gaps = 14/193 (7%)
Query: 22 RKDELKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP 81
+ K K NKD+ ++VG GPSG+ L ++G+T L ++
Sbjct: 32 EEYRRGWHPEKFRQTK----NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGH 87
Query: 82 YDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFT 141
++V L Y++ I + K S L +K + D
Sbjct: 88 LNQVAALPGLGEW------SYHRDYRETQITKLLKKNKESQLALGQKPMTADDVLQYGAD 141
Query: 142 KIYLATGSSPRTIS-QADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAF 200
K+ +ATG+S T+ + + ++ I P ++ ++F G A
Sbjct: 142 KVIIATGASECTLWNELKARESEWAENDIKGIYLIGDAEAP---RLIADATFTGHRVARE 198
Query: 201 CASKVKSVTVVGR 213
+ + +
Sbjct: 199 IEEANPQIAIPYK 211
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Score = 49.8 bits (117), Expect = 7e-07
Identities = 35/193 (18%), Positives = 67/193 (34%), Gaps = 14/193 (7%)
Query: 574 RKDELKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP 633
+ K K NKD+ ++VG GPSG+ L ++G+T L ++
Sbjct: 32 EEYRRGWHPEKFRQTK----NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGH 87
Query: 634 YDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFT 693
++V L Y++ I + K S L +K + D
Sbjct: 88 LNQVAALPGLGEW------SYHRDYRETQITKLLKKNKESQLALGQKPMTADDVLQYGAD 141
Query: 694 KIYLATGSSPRTIS-QADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAF 752
K+ +ATG+S T+ + + ++ I P ++ ++F G A
Sbjct: 142 KVIIATGASECTLWNELKARESEWAENDIKGIYLIGDAEAP---RLIADATFTGHRVARE 198
Query: 753 CASKVKSVTVVGR 765
+ + +
Sbjct: 199 IEEANPQIAIPYK 211
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Score = 49.8 bits (117), Expect = 7e-07
Identities = 35/193 (18%), Positives = 67/193 (34%), Gaps = 14/193 (7%)
Query: 1045 RKDELKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP 1104
+ K K NKD+ ++VG GPSG+ L ++G+T L ++
Sbjct: 32 EEYRRGWHPEKFRQTK----NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGH 87
Query: 1105 YDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFT 1164
++V L Y++ I + K S L +K + D
Sbjct: 88 LNQVAALPGLGEW------SYHRDYRETQITKLLKKNKESQLALGQKPMTADDVLQYGAD 141
Query: 1165 KIYLATGSSPRTIS-QADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAF 1223
K+ +ATG+S T+ + + ++ I P ++ ++F G A
Sbjct: 142 KVIIATGASECTLWNELKARESEWAENDIKGIYLIGDAEAP---RLIADATFTGHRVARE 198
Query: 1224 CASKVKSVTVVGR 1236
+ + +
Sbjct: 199 IEEANPQIAIPYK 211
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Score = 49.2 bits (116), Expect = 1e-06
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 17/77 (22%)
Query: 283 NTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQL--- 339
+ GV + + + V++ + TNVP +YA GDI +G L
Sbjct: 164 KLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDI--------------VGQPMLAHK 209
Query: 340 AQYHGRIAALNMVEKKT 356
A + G +AA N K
Sbjct: 210 AVHEGHVAAENCAGHKA 226
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Score = 49.2 bits (116), Expect = 1e-06
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 17/77 (22%)
Query: 835 NTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQL--- 891
+ GV + + + V++ + TNVP +YA GDI +G L
Sbjct: 164 KLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDI--------------VGQPMLAHK 209
Query: 892 AQYHGRIAALNMVEKKT 908
A + G +AA N K
Sbjct: 210 AVHEGHVAAENCAGHKA 226
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Score = 49.2 bits (116), Expect = 1e-06
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 17/77 (22%)
Query: 1306 NTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQL--- 1362
+ GV + + + V++ + TNVP +YA GDI +G L
Sbjct: 164 KLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDI--------------VGQPMLAHK 209
Query: 1363 AQYHGRIAALNMVEKKT 1379
A + G +AA N K
Sbjct: 210 AVHEGHVAAENCAGHKA 226
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Score = 47.8 bits (112), Expect = 2e-06
Identities = 34/181 (18%), Positives = 61/181 (33%), Gaps = 24/181 (13%)
Query: 184 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLG-------------KEVGERI 230
+V+++GS G AA + A K ++G +++ +
Sbjct: 3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGAL 62
Query: 231 TKLFESKGVKFVMKANVSSFEKNEKND-VTAANLDNGTTIPADLVIVGIGTVLNTNYLDG 289
+ V + + S + +G + A +IV G L
Sbjct: 63 KVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLE 122
Query: 290 KGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAAL 349
VE N ++++ ETNV GV+A GD P + + G G A+L
Sbjct: 123 GAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVP---YKQIIIATG-------EGAKASL 172
Query: 350 N 350
+
Sbjct: 173 S 173
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Score = 47.8 bits (112), Expect = 2e-06
Identities = 34/181 (18%), Positives = 61/181 (33%), Gaps = 24/181 (13%)
Query: 736 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLG-------------KEVGERI 782
+V+++GS G AA + A K ++G +++ +
Sbjct: 3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGAL 62
Query: 783 TKLFESKGVKFVMKANVSSFEKNEKND-VTAANLDNGTTIPADLVIVGIGTVLNTNYLDG 841
+ V + + S + +G + A +IV G L
Sbjct: 63 KVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLE 122
Query: 842 KGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAAL 901
VE N ++++ ETNV GV+A GD P + + G G A+L
Sbjct: 123 GAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVP---YKQIIIATG-------EGAKASL 172
Query: 902 N 902
+
Sbjct: 173 S 173
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Score = 47.8 bits (112), Expect = 2e-06
Identities = 34/181 (18%), Positives = 61/181 (33%), Gaps = 24/181 (13%)
Query: 1207 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLG-------------KEVGERI 1253
+V+++GS G AA + A K ++G +++ +
Sbjct: 3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGAL 62
Query: 1254 TKLFESKGVKFVMKANVSSFEKNEKND-VTAANLDNGTTIPADLVIVGIGTVLNTNYLDG 1312
+ V + + S + +G + A +IV G L
Sbjct: 63 KVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLE 122
Query: 1313 KGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAAL 1372
VE N ++++ ETNV GV+A GD P + + G G A+L
Sbjct: 123 GAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVP---YKQIIIATG-------EGAKASL 172
Query: 1373 N 1373
+
Sbjct: 173 S 173
|
| >d1jm1a_ b.33.1.1 (A:) Rieske protein II (SoxF) {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 202 | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Rieske iron-sulfur protein (ISP) domain: Rieske protein II (SoxF) species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Score = 47.8 bits (113), Expect = 2e-06
Identities = 14/76 (18%), Positives = 23/76 (30%), Gaps = 12/76 (15%)
Query: 975 ERNIYAVGTKCSHYGAPLVKGSLG-----------DGRVRCPWHGACFNIA-TGDIEDFP 1022
I+A C H G L + + CP HG+ + + G + P
Sbjct: 82 NGTIFAFSDVCVHLGCQLPAQVIVSSESDPGLYAKGADLHCPCHGSIYALKDGGVVVSGP 141
Query: 1023 GMDSLPCYKVTIQNDD 1038
LP + +
Sbjct: 142 APRPLPIVILDYDSST 157
|
| >d1jm1a_ b.33.1.1 (A:) Rieske protein II (SoxF) {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 202 | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Rieske iron-sulfur protein (ISP) domain: Rieske protein II (SoxF) species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Score = 47.0 bits (111), Expect = 4e-06
Identities = 14/74 (18%), Positives = 23/74 (31%), Gaps = 12/74 (16%)
Query: 506 NIYAVGTKCSHYGAPLVKGSLG-----------DGRVRCPWHGACFNIA-TGDIEDFPGM 553
I+A C H G L + + CP HG+ + + G + P
Sbjct: 84 TIFAFSDVCVHLGCQLPAQVIVSSESDPGLYAKGADLHCPCHGSIYALKDGGVVVSGPAP 143
Query: 554 DSLPCYKVTIQNDD 567
LP + +
Sbjct: 144 RPLPIVILDYDSST 157
|
| >d1z01a1 b.33.1.2 (A:16-163) 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO {Pseudomonas putida [TaxId: 303]} Length = 148 | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Ring hydroxylating alpha subunit ISP domain domain: 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO species: Pseudomonas putida [TaxId: 303]
Score = 46.7 bits (110), Expect = 2e-06
Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 10/86 (11%)
Query: 962 LTVGMDPLAAQFAERNIYAVGTKCSHYGAPLVKGSLG--DGRVRCPWHGACFNIATGDIE 1019
+ + P+ + ++A+ +C H G L + + C +HG F++ TG +
Sbjct: 46 IQICGVPIVLRRVNGKVFALKDQCLHRGVRLSEKPTCFTKSTISCWYHGFTFDLETGKLV 105
Query: 1020 DFPGMD--------SLPCYKVTIQND 1037
+ Y V N
Sbjct: 106 TIVANPEDKLIGTTGVTTYPVHEVNG 131
|
| >d1z01a1 b.33.1.2 (A:16-163) 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO {Pseudomonas putida [TaxId: 303]} Length = 148 | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Ring hydroxylating alpha subunit ISP domain domain: 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO species: Pseudomonas putida [TaxId: 303]
Score = 42.4 bits (99), Expect = 6e-05
Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 10/71 (14%)
Query: 506 NIYAVGTKCSHYGAPLVKGSLG--DGRVRCPWHGACFNIATGDIEDFPGMD--------S 555
++A+ +C H G L + + C +HG F++ TG +
Sbjct: 61 KVFALKDQCLHRGVRLSEKPTCFTKSTISCWYHGFTFDLETGKLVTIVANPEDKLIGTTG 120
Query: 556 LPCYKVTIQND 566
+ Y V N
Sbjct: 121 VTTYPVHEVNG 131
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 47.5 bits (112), Expect = 3e-06
Identities = 22/72 (30%), Positives = 28/72 (38%), Gaps = 17/72 (23%)
Query: 287 LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQL---AQYH 343
LD GVE + ++VNE TNV GVYA GD+ I L A+
Sbjct: 160 LDKIGVETDKLGRILVNERFSTNVSGVYAIGDV--------------IPGPMLAHKAEED 205
Query: 344 GRIAALNMVEKK 355
G + K
Sbjct: 206 GVACVEYLAGKV 217
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 47.5 bits (112), Expect = 3e-06
Identities = 22/72 (30%), Positives = 28/72 (38%), Gaps = 17/72 (23%)
Query: 839 LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQL---AQYH 895
LD GVE + ++VNE TNV GVYA GD+ I L A+
Sbjct: 160 LDKIGVETDKLGRILVNERFSTNVSGVYAIGDV--------------IPGPMLAHKAEED 205
Query: 896 GRIAALNMVEKK 907
G + K
Sbjct: 206 GVACVEYLAGKV 217
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 47.5 bits (112), Expect = 3e-06
Identities = 22/72 (30%), Positives = 28/72 (38%), Gaps = 17/72 (23%)
Query: 1310 LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQL---AQYH 1366
LD GVE + ++VNE TNV GVYA GD+ I L A+
Sbjct: 160 LDKIGVETDKLGRILVNERFSTNVSGVYAIGDV--------------IPGPMLAHKAEED 205
Query: 1367 GRIAALNMVEKK 1378
G + K
Sbjct: 206 GVACVEYLAGKV 217
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Score = 46.2 bits (108), Expect = 1e-05
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
Query: 287 LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRI 346
GV L+ + + V++Y T+VPGVYA GD+ + + A G +
Sbjct: 168 AADSGVTLDERGFIYVDDYCATSVPGVYAIGDVVRGAMLA-----------HKASEEGVV 216
Query: 347 AALNMVEKKTSL 358
A + K +
Sbjct: 217 VAERIAGHKAQM 228
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Score = 46.2 bits (108), Expect = 1e-05
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
Query: 839 LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRI 898
GV L+ + + V++Y T+VPGVYA GD+ + + A G +
Sbjct: 168 AADSGVTLDERGFIYVDDYCATSVPGVYAIGDVVRGAMLA-----------HKASEEGVV 216
Query: 899 AALNMVEKKTSL 910
A + K +
Sbjct: 217 VAERIAGHKAQM 228
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Score = 46.2 bits (108), Expect = 1e-05
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
Query: 1310 LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRI 1369
GV L+ + + V++Y T+VPGVYA GD+ + + A G +
Sbjct: 168 AADSGVTLDERGFIYVDDYCATSVPGVYAIGDVVRGAMLA-----------HKASEEGVV 216
Query: 1370 AALNMVEKKTSL 1381
A + K +
Sbjct: 217 VAERIAGHKAQM 228
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 45.3 bits (106), Expect = 1e-05
Identities = 39/192 (20%), Positives = 64/192 (33%), Gaps = 31/192 (16%)
Query: 180 TPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQES----------------LG 223
T + + ++GS AA + A +
Sbjct: 3 THNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPE 62
Query: 224 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLN 283
+G +T F + +F + K + + + I AD VI+ IG V
Sbjct: 63 GILGVELTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAVAK 122
Query: 284 TNYLDGK----GVELNGQKAVVVNE-YLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQ 338
+ K GVEL+ VV +T+VPGV+A GD+ + + G
Sbjct: 123 GHEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQ---DKKYRQAITAAG--- 176
Query: 339 LAQYHGRIAALN 350
G +AAL+
Sbjct: 177 ----TGCMAALD 184
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 45.3 bits (106), Expect = 1e-05
Identities = 39/192 (20%), Positives = 64/192 (33%), Gaps = 31/192 (16%)
Query: 732 TPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQES----------------LG 775
T + + ++GS AA + A +
Sbjct: 3 THNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPE 62
Query: 776 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLN 835
+G +T F + +F + K + + + I AD VI+ IG V
Sbjct: 63 GILGVELTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAVAK 122
Query: 836 TNYLDGK----GVELNGQKAVVVNE-YLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQ 890
+ K GVEL+ VV +T+VPGV+A GD+ + + G
Sbjct: 123 GHEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQ---DKKYRQAITAAG--- 176
Query: 891 LAQYHGRIAALN 902
G +AAL+
Sbjct: 177 ----TGCMAALD 184
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 45.3 bits (106), Expect = 1e-05
Identities = 39/192 (20%), Positives = 64/192 (33%), Gaps = 31/192 (16%)
Query: 1203 TPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQES----------------LG 1246
T + + ++GS AA + A +
Sbjct: 3 THNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPE 62
Query: 1247 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLN 1306
+G +T F + +F + K + + + I AD VI+ IG V
Sbjct: 63 GILGVELTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAVAK 122
Query: 1307 TNYLDGK----GVELNGQKAVVVNE-YLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQ 1361
+ K GVEL+ VV +T+VPGV+A GD+ + + G
Sbjct: 123 GHEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQ---DKKYRQAITAAG--- 176
Query: 1362 LAQYHGRIAALN 1373
G +AAL+
Sbjct: 177 ----TGCMAALD 184
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Score = 45.2 bits (106), Expect = 2e-05
Identities = 27/164 (16%), Positives = 55/164 (33%), Gaps = 27/164 (16%)
Query: 180 TPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP---------------FQESLGK 224
T S ++++GS G AA + A ++ + G
Sbjct: 3 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGP 62
Query: 225 EVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTV--- 281
+ ER+ + + + +N + + D +I+ G
Sbjct: 63 LLMERMHEHATKFETEIIFDHINKVDLQNRPFRLN----GDNGEYTCDALIIATGASARY 118
Query: 282 --LNTNYLDGKGVELNGQ---KAVVVNEYLETNVPGVYAGGDIA 320
NT +G+ NG ++ + +T++PGV+A GD+
Sbjct: 119 HSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVM 162
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Score = 45.2 bits (106), Expect = 2e-05
Identities = 27/164 (16%), Positives = 55/164 (33%), Gaps = 27/164 (16%)
Query: 732 TPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP---------------FQESLGK 776
T S ++++GS G AA + A ++ + G
Sbjct: 3 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGP 62
Query: 777 EVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTV--- 833
+ ER+ + + + +N + + D +I+ G
Sbjct: 63 LLMERMHEHATKFETEIIFDHINKVDLQNRPFRLN----GDNGEYTCDALIIATGASARY 118
Query: 834 --LNTNYLDGKGVELNGQ---KAVVVNEYLETNVPGVYAGGDIA 872
NT +G+ NG ++ + +T++PGV+A GD+
Sbjct: 119 HSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVM 162
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Score = 45.2 bits (106), Expect = 2e-05
Identities = 27/164 (16%), Positives = 55/164 (33%), Gaps = 27/164 (16%)
Query: 1203 TPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP---------------FQESLGK 1247
T S ++++GS G AA + A ++ + G
Sbjct: 3 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGP 62
Query: 1248 EVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTV--- 1304
+ ER+ + + + +N + + D +I+ G
Sbjct: 63 LLMERMHEHATKFETEIIFDHINKVDLQNRPFRLN----GDNGEYTCDALIIATGASARY 118
Query: 1305 --LNTNYLDGKGVELNGQ---KAVVVNEYLETNVPGVYAGGDIA 1343
NT +G+ NG ++ + +T++PGV+A GD+
Sbjct: 119 HSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVM 162
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.3 bits (101), Expect = 2e-05
Identities = 18/102 (17%), Positives = 39/102 (38%), Gaps = 8/102 (7%)
Query: 185 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMK 244
V++G+ +I +E A ++ +++ R S + T+ E+ GV+ +
Sbjct: 25 SVIVGAGYIAVEMAGILSALGSKTSLMIRH-DKVLRSFDSMISTNCTEELENAGVEVLKF 83
Query: 245 ANVSSFEKNEKN-DVTAANLDNG------TTIPADLVIVGIG 279
+ V +K +V+ G D ++ IG
Sbjct: 84 SQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG 125
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.3 bits (101), Expect = 2e-05
Identities = 18/102 (17%), Positives = 39/102 (38%), Gaps = 8/102 (7%)
Query: 737 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMK 796
V++G+ +I +E A ++ +++ R S + T+ E+ GV+ +
Sbjct: 25 SVIVGAGYIAVEMAGILSALGSKTSLMIRH-DKVLRSFDSMISTNCTEELENAGVEVLKF 83
Query: 797 ANVSSFEKNEKN-DVTAANLDNG------TTIPADLVIVGIG 831
+ V +K +V+ G D ++ IG
Sbjct: 84 SQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG 125
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.3 bits (101), Expect = 2e-05
Identities = 18/102 (17%), Positives = 39/102 (38%), Gaps = 8/102 (7%)
Query: 1208 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMK 1267
V++G+ +I +E A ++ +++ R S + T+ E+ GV+ +
Sbjct: 25 SVIVGAGYIAVEMAGILSALGSKTSLMIRH-DKVLRSFDSMISTNCTEELENAGVEVLKF 83
Query: 1268 ANVSSFEKNEKN-DVTAANLDNG------TTIPADLVIVGIG 1302
+ V +K +V+ G D ++ IG
Sbjct: 84 SQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG 125
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 122 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.5 bits (99), Expect = 4e-05
Identities = 21/98 (21%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
Query: 184 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVM 243
+ +IG IG+E + + VTVV S+ EV + K + +G+ F +
Sbjct: 25 RLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQP-QIGASMDGEVAKATQKFLKKQGLDFKL 83
Query: 244 KANVSSFEKNEKNDVTAANLDNGT-----TIPADLVIV 276
V S ++N+ +V +++ + A++++V
Sbjct: 84 STKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLV 121
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 122 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.5 bits (99), Expect = 4e-05
Identities = 21/98 (21%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
Query: 736 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVM 795
+ +IG IG+E + + VTVV S+ EV + K + +G+ F +
Sbjct: 25 RLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQP-QIGASMDGEVAKATQKFLKKQGLDFKL 83
Query: 796 KANVSSFEKNEKNDVTAANLDNGT-----TIPADLVIV 828
V S ++N+ +V +++ + A++++V
Sbjct: 84 STKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLV 121
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 122 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.5 bits (99), Expect = 4e-05
Identities = 21/98 (21%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
Query: 1207 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVM 1266
+ +IG IG+E + + VTVV S+ EV + K + +G+ F +
Sbjct: 25 RLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQP-QIGASMDGEVAKATQKFLKKQGLDFKL 83
Query: 1267 KANVSSFEKNEKNDVTAANLDNGT-----TIPADLVIV 1299
V S ++N+ +V +++ + A++++V
Sbjct: 84 STKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLV 121
|
| >d2de6a1 b.33.1.2 (A:1-142) Terminal oxygenase component of carbazole CarAa {Janthinobacterium sp. j3 [TaxId: 213804]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Ring hydroxylating alpha subunit ISP domain domain: Terminal oxygenase component of carbazole CarAa species: Janthinobacterium sp. j3 [TaxId: 213804]
Score = 42.8 bits (100), Expect = 4e-05
Identities = 14/86 (16%), Positives = 24/86 (27%), Gaps = 10/86 (11%)
Query: 962 LTVGMDPLAAQFAERNIYAVGTKCSHYGAPLVKGSLGD--GRVRCPWHGACFNIATGDIE 1019
L + + L + +Y + +C H G L + C +H + G +
Sbjct: 46 LKLLGENLLVNRIDGKLYCLKDRCLHRGVQLSVKVECKTKSTITCWYHAWTYRWEDGVLC 105
Query: 1020 DFPGMD--------SLPCYKVTIQND 1037
D L Y V
Sbjct: 106 DILTNPTSAQIGRQKLKTYPVQEAKG 131
|
| >d2de6a1 b.33.1.2 (A:1-142) Terminal oxygenase component of carbazole CarAa {Janthinobacterium sp. j3 [TaxId: 213804]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Ring hydroxylating alpha subunit ISP domain domain: Terminal oxygenase component of carbazole CarAa species: Janthinobacterium sp. j3 [TaxId: 213804]
Score = 41.7 bits (97), Expect = 1e-04
Identities = 12/71 (16%), Positives = 19/71 (26%), Gaps = 10/71 (14%)
Query: 506 NIYAVGTKCSHYGAPLVKGSLGD--GRVRCPWHGACFNIATGDIEDFPGMD--------S 555
+Y + +C H G L + C +H + G + D
Sbjct: 61 KLYCLKDRCLHRGVQLSVKVECKTKSTITCWYHAWTYRWEDGVLCDILTNPTSAQIGRQK 120
Query: 556 LPCYKVTIQND 566
L Y V
Sbjct: 121 LKTYPVQEAKG 131
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 43.9 bits (102), Expect = 5e-05
Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 17/62 (27%)
Query: 299 AVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQL---AQYHGRIAALNMVEKK 355
+ V+ T G+YA GD G L A GRIA + + +
Sbjct: 183 YLTVDRVSRTLATGIYAAGDC--------------TGLLPLASVAAMQGRIAMYHALGEG 228
Query: 356 TS 357
S
Sbjct: 229 VS 230
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 43.9 bits (102), Expect = 5e-05
Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 17/62 (27%)
Query: 851 AVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQL---AQYHGRIAALNMVEKK 907
+ V+ T G+YA GD G L A GRIA + + +
Sbjct: 183 YLTVDRVSRTLATGIYAAGDC--------------TGLLPLASVAAMQGRIAMYHALGEG 228
Query: 908 TS 909
S
Sbjct: 229 VS 230
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 43.9 bits (102), Expect = 5e-05
Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 17/62 (27%)
Query: 1322 AVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQL---AQYHGRIAALNMVEKK 1378
+ V+ T G+YA GD G L A GRIA + + +
Sbjct: 183 YLTVDRVSRTLATGIYAAGDC--------------TGLLPLASVAAMQGRIAMYHALGEG 228
Query: 1379 TS 1380
S
Sbjct: 229 VS 230
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 125 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Score = 41.8 bits (97), Expect = 8e-05
Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 3/98 (3%)
Query: 184 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVM 243
+++IG IG+E ++ + VV + +++ + K E + ++
Sbjct: 28 KLLIIGGGIIGLEMGTVYSTLGSRLDVVEMM-DGLMQGADRDLVKVWQKQNEYRFDNIMV 86
Query: 244 KANVSSFEKNEKNDVTAANLDNG--TTIPADLVIVGIG 279
+ E E N D V+V G
Sbjct: 87 NTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAG 124
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 125 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Score = 41.8 bits (97), Expect = 8e-05
Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 3/98 (3%)
Query: 736 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVM 795
+++IG IG+E ++ + VV + +++ + K E + ++
Sbjct: 28 KLLIIGGGIIGLEMGTVYSTLGSRLDVVEMM-DGLMQGADRDLVKVWQKQNEYRFDNIMV 86
Query: 796 KANVSSFEKNEKNDVTAANLDNG--TTIPADLVIVGIG 831
+ E E N D V+V G
Sbjct: 87 NTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAG 124
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 125 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Score = 41.8 bits (97), Expect = 8e-05
Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 3/98 (3%)
Query: 1207 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVM 1266
+++IG IG+E ++ + VV + +++ + K E + ++
Sbjct: 28 KLLIIGGGIIGLEMGTVYSTLGSRLDVVEMM-DGLMQGADRDLVKVWQKQNEYRFDNIMV 86
Query: 1267 KANVSSFEKNEKNDVTAANLDNG--TTIPADLVIVGIG 1302
+ E E N D V+V G
Sbjct: 87 NTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAG 124
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Score = 42.1 bits (97), Expect = 2e-04
Identities = 22/173 (12%), Positives = 50/173 (28%), Gaps = 8/173 (4%)
Query: 47 IVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFY 106
+VVGGG GAT + ++ + ++ I + + + +
Sbjct: 6 VVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGL 65
Query: 107 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPR------TISQADGV 160
+ + I V+ + ++K +K G + + +A G + +
Sbjct: 66 RAHGIQVVHDSAT--GIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIAQI 123
Query: 161 NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGR 213
+ + + + VIG + I S V
Sbjct: 124 AGLTNDAGWCPVDIKTFESSIHKGIHVIGDASIANPMPKSGYSANSQGKVAAA 176
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Score = 42.1 bits (97), Expect = 2e-04
Identities = 22/173 (12%), Positives = 50/173 (28%), Gaps = 8/173 (4%)
Query: 599 IVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFY 658
+VVGGG GAT + ++ + ++ I + + + +
Sbjct: 6 VVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGL 65
Query: 659 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPR------TISQADGV 712
+ + I V+ + ++K +K G + + +A G + +
Sbjct: 66 RAHGIQVVHDSAT--GIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIAQI 123
Query: 713 NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGR 765
+ + + + VIG + I S V
Sbjct: 124 AGLTNDAGWCPVDIKTFESSIHKGIHVIGDASIANPMPKSGYSANSQGKVAAA 176
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Score = 42.1 bits (97), Expect = 2e-04
Identities = 22/173 (12%), Positives = 50/173 (28%), Gaps = 8/173 (4%)
Query: 1070 IVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFY 1129
+VVGGG GAT + ++ + ++ I + + + +
Sbjct: 6 VVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGL 65
Query: 1130 KDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPR------TISQADGV 1183
+ + I V+ + ++K +K G + + +A G + +
Sbjct: 66 RAHGIQVVHDSAT--GIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIAQI 123
Query: 1184 NKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGR 1236
+ + + + VIG + I S V
Sbjct: 124 AGLTNDAGWCPVDIKTFESSIHKGIHVIGDASIANPMPKSGYSANSQGKVAAA 176
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Score = 40.5 bits (93), Expect = 5e-04
Identities = 33/184 (17%), Positives = 60/184 (32%), Gaps = 23/184 (12%)
Query: 184 NVVVIGSSFIGMEAAAFCASKVK--SVTVVGRGAVPFQESLGKEVGERITKLFESKGVKF 241
VVV+G G AA + VT++ + L EV KL K
Sbjct: 4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYD 63
Query: 242 VMKANVSSFEKNEKNDVTAAN----LDNGTTIPADLVIVGIGTVLNTNYLDGKGVEL--- 294
++A+ + + G D +V G L + ++ + ++
Sbjct: 64 GLRAHGIQVVHDSATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIAQI 123
Query: 295 ------NGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAA 348
G V + + + G++ GD + A K+ A G++AA
Sbjct: 124 AGLTNDAGWCPVDIKTFESSIHKGIHVIGDASIANPMP---KSG-----YSANSQGKVAA 175
Query: 349 LNMV 352
+V
Sbjct: 176 AAVV 179
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Score = 40.5 bits (93), Expect = 5e-04
Identities = 33/184 (17%), Positives = 60/184 (32%), Gaps = 23/184 (12%)
Query: 736 NVVVIGSSFIGMEAAAFCASKVK--SVTVVGRGAVPFQESLGKEVGERITKLFESKGVKF 793
VVV+G G AA + VT++ + L EV KL K
Sbjct: 4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYD 63
Query: 794 VMKANVSSFEKNEKNDVTAAN----LDNGTTIPADLVIVGIGTVLNTNYLDGKGVEL--- 846
++A+ + + G D +V G L + ++ + ++
Sbjct: 64 GLRAHGIQVVHDSATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIAQI 123
Query: 847 ------NGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAA 900
G V + + + G++ GD + A K+ A G++AA
Sbjct: 124 AGLTNDAGWCPVDIKTFESSIHKGIHVIGDASIANPMP---KSG-----YSANSQGKVAA 175
Query: 901 LNMV 904
+V
Sbjct: 176 AAVV 179
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Score = 40.5 bits (93), Expect = 5e-04
Identities = 33/184 (17%), Positives = 60/184 (32%), Gaps = 23/184 (12%)
Query: 1207 NVVVIGSSFIGMEAAAFCASKVK--SVTVVGRGAVPFQESLGKEVGERITKLFESKGVKF 1264
VVV+G G AA + VT++ + L EV KL K
Sbjct: 4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYD 63
Query: 1265 VMKANVSSFEKNEKNDVTAAN----LDNGTTIPADLVIVGIGTVLNTNYLDGKGVEL--- 1317
++A+ + + G D +V G L + ++ + ++
Sbjct: 64 GLRAHGIQVVHDSATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIAQI 123
Query: 1318 ------NGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAA 1371
G V + + + G++ GD + A K+ A G++AA
Sbjct: 124 AGLTNDAGWCPVDIKTFESSIHKGIHVIGDASIANPMP---KSG-----YSANSQGKVAA 175
Query: 1372 LNMV 1375
+V
Sbjct: 176 AAVV 179
|
| >d1riea_ b.33.1.1 (A:) ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain {Cow (Bos taurus) [TaxId: 9913]} Length = 127 | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Rieske iron-sulfur protein (ISP) domain: ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain species: Cow (Bos taurus) [TaxId: 9913]
Score = 40.8 bits (95), Expect = 2e-04
Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 1/85 (1%)
Query: 487 LAISPASSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGD 546
+ +S L + + C+H G + + G CP HG+ ++ A+G
Sbjct: 43 VEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYD-ASGR 101
Query: 547 IEDFPGMDSLPCYKVTIQNDDSVVV 571
I P +L +DD V+V
Sbjct: 102 IRKGPAPLNLEVPSYEFTSDDMVIV 126
|
| >d1riea_ b.33.1.1 (A:) ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain {Cow (Bos taurus) [TaxId: 9913]} Length = 127 | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Rieske iron-sulfur protein (ISP) domain: ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.3 bits (91), Expect = 5e-04
Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 1/89 (1%)
Query: 954 NADKVLAILTVGMDPLAAQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNI 1013
V + + + C+H G + + G CP HG+ ++
Sbjct: 39 QEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYD- 97
Query: 1014 ATGDIEDFPGMDSLPCYKVTIQNDDSVVV 1042
A+G I P +L +DD V+V
Sbjct: 98 ASGRIRKGPAPLNLEVPSYEFTSDDMVIV 126
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Score = 42.3 bits (98), Expect = 2e-04
Identities = 27/228 (11%), Positives = 54/228 (23%), Gaps = 66/228 (28%)
Query: 180 TPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGR-------------------------- 213
T ++ +++IG G AA +V
Sbjct: 3 TIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALGGTCLNIGCIPSKALIHVAEQFH 62
Query: 214 ---------------GAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDV 258
+ + I + + K V K
Sbjct: 63 QASRFTEPSPLGISVASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLD 122
Query: 259 TAANLDNGTTIPADLVIVGIGTVLNT--------NYLDGKGVELNGQKAVVVNEYLETNV 310
+G I + +++ G+ + A+ ++E +T++
Sbjct: 123 GKQVEVDGQRIQCEHLLLATGSSSVELPRRPRTKGFNLECLDLKMNGAAIAIDERCQTSM 182
Query: 311 PGVYAGGDIAYAPLHSFYNKNASIGHYQLAQ---YHGRIAALNMVEKK 355
V+A GD+ G LA G + A + K
Sbjct: 183 HNVWAIGDV--------------AGEPMLAHRAMAQGEMVAEIIAGKA 216
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Score = 42.3 bits (98), Expect = 2e-04
Identities = 27/228 (11%), Positives = 54/228 (23%), Gaps = 66/228 (28%)
Query: 732 TPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGR-------------------------- 765
T ++ +++IG G AA +V
Sbjct: 3 TIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALGGTCLNIGCIPSKALIHVAEQFH 62
Query: 766 ---------------GAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDV 810
+ + I + + K V K
Sbjct: 63 QASRFTEPSPLGISVASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLD 122
Query: 811 TAANLDNGTTIPADLVIVGIGTVLNT--------NYLDGKGVELNGQKAVVVNEYLETNV 862
+G I + +++ G+ + A+ ++E +T++
Sbjct: 123 GKQVEVDGQRIQCEHLLLATGSSSVELPRRPRTKGFNLECLDLKMNGAAIAIDERCQTSM 182
Query: 863 PGVYAGGDIAYAPLHSFYNKNASIGHYQLAQ---YHGRIAALNMVEKK 907
V+A GD+ G LA G + A + K
Sbjct: 183 HNVWAIGDV--------------AGEPMLAHRAMAQGEMVAEIIAGKA 216
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Score = 42.3 bits (98), Expect = 2e-04
Identities = 27/228 (11%), Positives = 54/228 (23%), Gaps = 66/228 (28%)
Query: 1203 TPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGR-------------------------- 1236
T ++ +++IG G AA +V
Sbjct: 3 TIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALGGTCLNIGCIPSKALIHVAEQFH 62
Query: 1237 ---------------GAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDV 1281
+ + I + + K V K
Sbjct: 63 QASRFTEPSPLGISVASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLD 122
Query: 1282 TAANLDNGTTIPADLVIVGIGTVLNT--------NYLDGKGVELNGQKAVVVNEYLETNV 1333
+G I + +++ G+ + A+ ++E +T++
Sbjct: 123 GKQVEVDGQRIQCEHLLLATGSSSVELPRRPRTKGFNLECLDLKMNGAAIAIDERCQTSM 182
Query: 1334 PGVYAGGDIAYAPLHSFYNKNASIGHYQLAQ---YHGRIAALNMVEKK 1378
V+A GD+ G LA G + A + K
Sbjct: 183 HNVWAIGDV--------------AGEPMLAHRAMAQGEMVAEIIAGKA 216
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 40.2 bits (93), Expect = 2e-04
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Query: 183 SNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFV 242
++VVIG +IG+E A+ VT++ + +L + KGV+ V
Sbjct: 23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRL-KKKGVEVV 81
Query: 243 MKANVSSFEKNEKN-DVTAANLDNGTTIPADLVIV 276
A E+ E VT TI AD V+V
Sbjct: 82 TNALAKGAEEREDGVTVTYEANGETKTIDADYVLV 116
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 40.2 bits (93), Expect = 2e-04
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Query: 735 SNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFV 794
++VVIG +IG+E A+ VT++ + +L + KGV+ V
Sbjct: 23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRL-KKKGVEVV 81
Query: 795 MKANVSSFEKNEKN-DVTAANLDNGTTIPADLVIV 828
A E+ E VT TI AD V+V
Sbjct: 82 TNALAKGAEEREDGVTVTYEANGETKTIDADYVLV 116
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 40.2 bits (93), Expect = 2e-04
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Query: 1206 SNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFV 1265
++VVIG +IG+E A+ VT++ + +L + KGV+ V
Sbjct: 23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRL-KKKGVEVV 81
Query: 1266 MKANVSSFEKNEKN-DVTAANLDNGTTIPADLVIV 1299
A E+ E VT TI AD V+V
Sbjct: 82 TNALAKGAEEREDGVTVTYEANGETKTIDADYVLV 116
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Score = 41.8 bits (97), Expect = 3e-04
Identities = 29/195 (14%), Positives = 63/195 (32%), Gaps = 8/195 (4%)
Query: 48 VVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYK 107
VVG GP+G + L ++ + I ++ +P+ V+ D ++ T
Sbjct: 6 VVGSGPAGFYTAQHLLKHHSRAHVD-IYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTA 64
Query: 108 DNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLR 167
+D G + + + +Q+ + + L+ G+ ++ V L
Sbjct: 65 RSDRCAFYGNVEVG------RDVTVQELQD-AYHAVVLSYGAEDKSRPIDPSVPFDPKLG 117
Query: 168 TVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVG 227
V + + + G+ S + ++ S +
Sbjct: 118 VVPNMEGRVVDVPGLYCSGWVKRGPTGVITTTMTDSFLTGQILLQDLKAGHLPSGPRPGS 177
Query: 228 ERITKLFESKGVKFV 242
I L +S+GV V
Sbjct: 178 AFIKALLDSRGVWPV 192
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Score = 41.8 bits (97), Expect = 3e-04
Identities = 29/195 (14%), Positives = 63/195 (32%), Gaps = 8/195 (4%)
Query: 600 VVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYK 659
VVG GP+G + L ++ + I ++ +P+ V+ D ++ T
Sbjct: 6 VVGSGPAGFYTAQHLLKHHSRAHVD-IYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTA 64
Query: 660 DNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLR 719
+D G + + + +Q+ + + L+ G+ ++ V L
Sbjct: 65 RSDRCAFYGNVEVG------RDVTVQELQD-AYHAVVLSYGAEDKSRPIDPSVPFDPKLG 117
Query: 720 TVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVG 779
V + + + G+ S + ++ S +
Sbjct: 118 VVPNMEGRVVDVPGLYCSGWVKRGPTGVITTTMTDSFLTGQILLQDLKAGHLPSGPRPGS 177
Query: 780 ERITKLFESKGVKFV 794
I L +S+GV V
Sbjct: 178 AFIKALLDSRGVWPV 192
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Score = 41.8 bits (97), Expect = 3e-04
Identities = 29/195 (14%), Positives = 63/195 (32%), Gaps = 8/195 (4%)
Query: 1071 VVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYK 1130
VVG GP+G + L ++ + I ++ +P+ V+ D ++ T
Sbjct: 6 VVGSGPAGFYTAQHLLKHHSRAHVD-IYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTA 64
Query: 1131 DNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLR 1190
+D G + + + +Q+ + + L+ G+ ++ V L
Sbjct: 65 RSDRCAFYGNVEVG------RDVTVQELQD-AYHAVVLSYGAEDKSRPIDPSVPFDPKLG 117
Query: 1191 TVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVG 1250
V + + + G+ S + ++ S +
Sbjct: 118 VVPNMEGRVVDVPGLYCSGWVKRGPTGVITTTMTDSFLTGQILLQDLKAGHLPSGPRPGS 177
Query: 1251 ERITKLFESKGVKFV 1265
I L +S+GV V
Sbjct: 178 AFIKALLDSRGVWPV 192
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.8 bits (97), Expect = 3e-04
Identities = 11/72 (15%), Positives = 25/72 (34%), Gaps = 17/72 (23%)
Query: 287 LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQ---YH 343
+ G+E++ + +V+++ + P + GD+ + P LA
Sbjct: 172 AEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGP--------------MLAHKAEEE 217
Query: 344 GRIAALNMVEKK 355
G A +
Sbjct: 218 GIAAVEMLKTGH 229
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.8 bits (97), Expect = 3e-04
Identities = 11/72 (15%), Positives = 25/72 (34%), Gaps = 17/72 (23%)
Query: 839 LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQ---YH 895
+ G+E++ + +V+++ + P + GD+ + P LA
Sbjct: 172 AEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGP--------------MLAHKAEEE 217
Query: 896 GRIAALNMVEKK 907
G A +
Sbjct: 218 GIAAVEMLKTGH 229
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.8 bits (97), Expect = 3e-04
Identities = 11/72 (15%), Positives = 25/72 (34%), Gaps = 17/72 (23%)
Query: 1310 LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQ---YH 1366
+ G+E++ + +V+++ + P + GD+ + P LA
Sbjct: 172 AEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGP--------------MLAHKAEEE 217
Query: 1367 GRIAALNMVEKK 1378
G A +
Sbjct: 218 GIAAVEMLKTGH 229
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Score = 41.4 bits (95), Expect = 6e-04
Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 26/109 (23%)
Query: 264 DNGTTIPADLVIVGI-------------GTVLNTNYLDGKGVELNGQKAVVVNEYLETNV 310
D VI+ G N++ N + + +E N+
Sbjct: 278 RQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFLLNFIPEVY-GHNYDSVLDAIDKMEKNL 336
Query: 311 PGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSLS 359
PG++ G+ S+G A G AA ++ S+S
Sbjct: 337 PGLFYAGNHRGGL---------SVGK---ALSSGCNAADLVISYLESVS 373
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Score = 41.4 bits (95), Expect = 6e-04
Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 26/109 (23%)
Query: 816 DNGTTIPADLVIVGI-------------GTVLNTNYLDGKGVELNGQKAVVVNEYLETNV 862
D VI+ G N++ N + + +E N+
Sbjct: 278 RQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFLLNFIPEVY-GHNYDSVLDAIDKMEKNL 336
Query: 863 PGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSLS 911
PG++ G+ S+G A G AA ++ S+S
Sbjct: 337 PGLFYAGNHRGGL---------SVGK---ALSSGCNAADLVISYLESVS 373
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Score = 41.4 bits (95), Expect = 6e-04
Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 26/109 (23%)
Query: 1287 DNGTTIPADLVIVGI-------------GTVLNTNYLDGKGVELNGQKAVVVNEYLETNV 1333
D VI+ G N++ N + + +E N+
Sbjct: 278 RQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFLLNFIPEVY-GHNYDSVLDAIDKMEKNL 336
Query: 1334 PGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSLS 1382
PG++ G+ S+G A G AA ++ S+S
Sbjct: 337 PGLFYAGNHRGGL---------SVGK---ALSSGCNAADLVISYLESVS 373
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Score = 40.3 bits (93), Expect = 8e-04
Identities = 32/186 (17%), Positives = 56/186 (30%), Gaps = 47/186 (25%)
Query: 185 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP----------------------FQESL 222
+ IG G+ + A + ++ +
Sbjct: 5 YIAIGGGSGGIASINRAAMYGQKCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMY 64
Query: 223 GKEVGERITKL----------------FESKGVKFVMKAN-VSSFEKNEKNDVTAANLDN 265
G + G T + V+ N V + + N
Sbjct: 65 GPDYGFDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEVN 124
Query: 266 GTTIPADLVIVGIGTVLNT--------NYLDGKGVELNGQKAVVVNEYLETNVPGVYAGG 317
G TI AD +++ G + L+ GV+ N + +VV++Y TN+ G+YA G
Sbjct: 125 GETITADHILIATGGRPSHPREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVG 184
Query: 318 DIAYAP 323
D A
Sbjct: 185 DNTGAV 190
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Score = 40.3 bits (93), Expect = 8e-04
Identities = 32/186 (17%), Positives = 56/186 (30%), Gaps = 47/186 (25%)
Query: 737 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP----------------------FQESL 774
+ IG G+ + A + ++ +
Sbjct: 5 YIAIGGGSGGIASINRAAMYGQKCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMY 64
Query: 775 GKEVGERITKL----------------FESKGVKFVMKAN-VSSFEKNEKNDVTAANLDN 817
G + G T + V+ N V + + N
Sbjct: 65 GPDYGFDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEVN 124
Query: 818 GTTIPADLVIVGIGTVLNT--------NYLDGKGVELNGQKAVVVNEYLETNVPGVYAGG 869
G TI AD +++ G + L+ GV+ N + +VV++Y TN+ G+YA G
Sbjct: 125 GETITADHILIATGGRPSHPREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVG 184
Query: 870 DIAYAP 875
D A
Sbjct: 185 DNTGAV 190
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Score = 40.3 bits (93), Expect = 8e-04
Identities = 32/186 (17%), Positives = 56/186 (30%), Gaps = 47/186 (25%)
Query: 1208 VVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP----------------------FQESL 1245
+ IG G+ + A + ++ +
Sbjct: 5 YIAIGGGSGGIASINRAAMYGQKCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMY 64
Query: 1246 GKEVGERITKL----------------FESKGVKFVMKAN-VSSFEKNEKNDVTAANLDN 1288
G + G T + V+ N V + + N
Sbjct: 65 GPDYGFDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEVN 124
Query: 1289 GTTIPADLVIVGIGTVLNT--------NYLDGKGVELNGQKAVVVNEYLETNVPGVYAGG 1340
G TI AD +++ G + L+ GV+ N + +VV++Y TN+ G+YA G
Sbjct: 125 GETITADHILIATGGRPSHPREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVG 184
Query: 1341 DIAYAP 1346
D A
Sbjct: 185 DNTGAV 190
|
| >d3cx5e1 b.33.1.1 (E:87-215) ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 129 | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Rieske iron-sulfur protein (ISP) domain: ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.4 bits (86), Expect = 0.003
Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 1/89 (1%)
Query: 953 SNADKVLAILTVGMDPLAAQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFN 1012
A+ V A + + + C+H G + + G CP HG+ ++
Sbjct: 41 QEANSVDMSALKDPQTDADRVKDPQWLIMLGICTHLGCVPIGEAGDFGGWFCPCHGSHYD 100
Query: 1013 IATGDIEDFPGMDSLPCYKVTIQNDDSVV 1041
+G I P +L D +V
Sbjct: 101 -ISGRIRKGPAPLNLEIPAYEFDGDKVIV 128
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.0 bits (89), Expect = 0.003
Identities = 8/63 (12%), Positives = 17/63 (26%)
Query: 214 GAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADL 273
+ E+ + +L G +++ + + T A L
Sbjct: 226 SPYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPL 285
Query: 274 VIV 276
VI
Sbjct: 286 VIA 288
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.0 bits (89), Expect = 0.003
Identities = 8/63 (12%), Positives = 17/63 (26%)
Query: 766 GAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADL 825
+ E+ + +L G +++ + + T A L
Sbjct: 226 SPYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPL 285
Query: 826 VIV 828
VI
Sbjct: 286 VIA 288
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.0 bits (89), Expect = 0.003
Identities = 8/63 (12%), Positives = 17/63 (26%)
Query: 1237 GAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADL 1296
+ E+ + +L G +++ + + T A L
Sbjct: 226 SPYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPL 285
Query: 1297 VIV 1299
VI
Sbjct: 286 VIA 288
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 123 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 36.8 bits (84), Expect = 0.003
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 184 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVM 243
+VVIG+ +IG+E + VTVV + + E+ ++ + E +G+KF +
Sbjct: 27 KLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT-MDAEIRKQFQRSLEKQGMKFKL 85
Query: 244 KANVSSFEKNEKN-DVTAANLDNG--TTIPADLVIV 276
K V + + +T G T I AD+V+V
Sbjct: 86 KTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLV 121
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 123 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 36.8 bits (84), Expect = 0.003
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 736 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVM 795
+VVIG+ +IG+E + VTVV + + E+ ++ + E +G+KF +
Sbjct: 27 KLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT-MDAEIRKQFQRSLEKQGMKFKL 85
Query: 796 KANVSSFEKNEKN-DVTAANLDNG--TTIPADLVIV 828
K V + + +T G T I AD+V+V
Sbjct: 86 KTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLV 121
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 123 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 36.8 bits (84), Expect = 0.003
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 1207 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVM 1266
+VVIG+ +IG+E + VTVV + + E+ ++ + E +G+KF +
Sbjct: 27 KLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT-MDAEIRKQFQRSLEKQGMKFKL 85
Query: 1267 KANVSSFEKNEKN-DVTAANLDNG--TTIPADLVIV 1299
K V + + +T G T I AD+V+V
Sbjct: 86 KTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLV 121
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.2 bits (87), Expect = 0.004
Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 16/59 (27%)
Query: 301 VVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQL---AQYHGRIAALNMVEKKT 356
V + +TNVP +YA GDI G +L A GR+ A + T
Sbjct: 186 PVTDEEQTNVPYIYAIGDILE-------------GKLELTPVAIQAGRLLAQRLYGGST 231
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.2 bits (87), Expect = 0.004
Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 16/59 (27%)
Query: 853 VVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQL---AQYHGRIAALNMVEKKT 908
V + +TNVP +YA GDI G +L A GR+ A + T
Sbjct: 186 PVTDEEQTNVPYIYAIGDILE-------------GKLELTPVAIQAGRLLAQRLYGGST 231
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.2 bits (87), Expect = 0.004
Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 16/59 (27%)
Query: 1324 VVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQL---AQYHGRIAALNMVEKKT 1379
V + +TNVP +YA GDI G +L A GR+ A + T
Sbjct: 186 PVTDEEQTNVPYIYAIGDILE-------------GKLELTPVAIQAGRLLAQRLYGGST 231
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1466 | |||
| d1m6ia1 | 213 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.87 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.81 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.8 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.78 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.78 | |
| d1m6ia1 | 213 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.78 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.77 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.75 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.75 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.74 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.73 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.73 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.72 | |
| d1q1ra3 | 103 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.72 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 99.71 | |
| d1d7ya3 | 97 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.71 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 99.71 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.67 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 99.67 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.67 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.66 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 99.65 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.63 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 99.63 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 99.62 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 99.61 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.61 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 99.6 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.6 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.6 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 99.59 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.59 | |
| d1mo9a1 | 261 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 99.59 | |
| d1mo9a1 | 261 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 99.58 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 99.56 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.53 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 99.53 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.52 | |
| d1vm9a_ | 109 | Toluene-4-monooxygenase system protein C, TmoC {Ps | 99.52 | |
| d1fqta_ | 109 | Rieske-type ferredoxin associated with biphenyl di | 99.52 | |
| d1xdia1 | 233 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 99.51 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.51 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.49 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 99.49 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 99.48 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.48 | |
| d3c0da1 | 108 | NADH-nitrite reductase small subunit NirD {Vibrio | 99.47 | |
| d1xdia1 | 233 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 99.47 | |
| d2jo6a1 | 108 | NADH-nitrite reductase small subunit NirD {Escheri | 99.47 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 99.46 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.45 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 99.45 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 99.45 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 99.45 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 99.45 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 99.45 | |
| d2jzaa1 | 122 | NADH-nitrite reductase small subunit NirD {Erwinia | 99.44 | |
| d1feca1 | 240 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.43 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.43 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.43 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.42 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 99.42 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 99.42 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 99.41 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.41 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 99.41 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 99.4 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.4 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.4 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 99.4 | |
| d1z01a1 | 148 | 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygen | 99.39 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 99.39 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 99.39 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 99.38 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 99.38 | |
| d1rfsa_ | 127 | ISP subunit from chloroplast cytochrome bf complex | 99.38 | |
| d2de6a1 | 142 | Terminal oxygenase component of carbazole CarAa {J | 99.35 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.35 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 99.35 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 99.34 | |
| d1aoga1 | 238 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 99.34 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 99.33 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 99.33 | |
| d2e74d1 | 134 | ISP subunit from the cytochrome b6f complex, solub | 99.32 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 99.31 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 99.31 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 99.28 | |
| d1g8kb_ | 133 | Arsenite oxidase Rieske subunit {Alcaligenes faeca | 99.28 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 99.27 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 99.27 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 99.26 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 99.24 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 99.22 | |
| d1vm9a_ | 109 | Toluene-4-monooxygenase system protein C, TmoC {Ps | 99.22 | |
| d3c0da1 | 108 | NADH-nitrite reductase small subunit NirD {Vibrio | 99.22 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 99.21 | |
| d1fqta_ | 109 | Rieske-type ferredoxin associated with biphenyl di | 99.2 | |
| d1nyka_ | 156 | Soluble Rieske protein {Thermus thermophilus [TaxI | 99.18 | |
| d1feca1 | 240 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.16 | |
| d2jo6a1 | 108 | NADH-nitrite reductase small subunit NirD {Escheri | 99.15 | |
| d2jzaa1 | 122 | NADH-nitrite reductase small subunit NirD {Erwinia | 99.13 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.1 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.05 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.01 | |
| d1ps9a2 | 162 | 2,4-dienoyl-CoA reductase, C-terminal domain {Esch | 99.0 | |
| d1ulia1 | 154 | Biphenyl dioxygenase large subunit BphA1, N-termin | 98.99 | |
| d1rfsa_ | 127 | ISP subunit from chloroplast cytochrome bf complex | 98.98 | |
| d1aoga1 | 238 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 98.97 | |
| d1z01a1 | 148 | 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygen | 98.97 | |
| d2de6a1 | 142 | Terminal oxygenase component of carbazole CarAa {J | 98.96 | |
| d2b1xa1 | 162 | Naphthalene 1,2-dioxygenase alpha subunit, N-domai | 98.96 | |
| d1ps9a2 | 162 | 2,4-dienoyl-CoA reductase, C-terminal domain {Esch | 98.94 | |
| d2e74d1 | 134 | ISP subunit from the cytochrome b6f complex, solub | 98.93 | |
| d2bmoa1 | 150 | Nitrobenzene dioxygenase alpha subunit, NBDO-alpha | 98.92 | |
| d1g8kb_ | 133 | Arsenite oxidase Rieske subunit {Alcaligenes faeca | 98.91 | |
| d1jm1a_ | 202 | Rieske protein II (SoxF) {Archaeon Sulfolobus acid | 98.88 | |
| d1trba2 | 126 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 98.88 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 98.88 | |
| d1trba2 | 126 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 98.86 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 98.86 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 98.85 | |
| d3cx5e1 | 129 | ISP subunit of the mitochondrial cytochrome bc1-co | 98.84 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 98.81 | |
| d1nyka_ | 156 | Soluble Rieske protein {Thermus thermophilus [TaxI | 98.8 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 98.75 | |
| d1riea_ | 127 | ISP subunit of the mitochondrial cytochrome bc1-co | 98.74 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 98.73 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 98.7 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 98.69 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 98.68 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 98.68 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 98.67 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 98.67 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 98.64 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 98.64 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 98.63 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 98.61 | |
| d1vdca2 | 130 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 98.6 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 98.6 | |
| d1vdca2 | 130 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 98.6 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 98.59 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 98.59 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 98.59 | |
| d1q1ra3 | 103 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 98.55 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 98.53 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 98.52 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 98.52 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 98.51 | |
| d1d7ya3 | 97 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 98.51 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 98.49 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 98.49 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 98.48 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 98.46 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 98.44 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 98.44 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 98.42 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 98.41 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 98.39 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 98.38 | |
| d1ulia1 | 154 | Biphenyl dioxygenase large subunit BphA1, N-termin | 98.38 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 98.36 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 98.36 | |
| d3cx5e1 | 129 | ISP subunit of the mitochondrial cytochrome bc1-co | 98.35 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 98.33 | |
| d1jm1a_ | 202 | Rieske protein II (SoxF) {Archaeon Sulfolobus acid | 98.32 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 98.32 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 98.31 | |
| d2b1xa1 | 162 | Naphthalene 1,2-dioxygenase alpha subunit, N-domai | 98.3 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 98.28 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 98.28 | |
| d1riea_ | 127 | ISP subunit of the mitochondrial cytochrome bc1-co | 98.27 | |
| d2bmoa1 | 150 | Nitrobenzene dioxygenase alpha subunit, NBDO-alpha | 98.27 | |
| d1cjca1 | 225 | Adrenodoxin reductase of mitochondrial p450 system | 98.25 | |
| d1chua2 | 305 | L-aspartate oxidase {Escherichia coli [TaxId: 562] | 98.25 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 98.23 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 98.22 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 98.19 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 98.18 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 98.17 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 98.16 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 98.12 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 98.11 | |
| d1kf6a2 | 311 | Fumarate reductase {Escherichia coli [TaxId: 562]} | 98.07 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 98.06 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 98.01 | |
| d1neka2 | 330 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 97.99 | |
| d1chua2 | 305 | L-aspartate oxidase {Escherichia coli [TaxId: 562] | 97.93 | |
| d1cjca1 | 225 | Adrenodoxin reductase of mitochondrial p450 system | 97.92 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 97.91 | |
| d1lqta1 | 216 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 97.91 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 97.79 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 97.73 | |
| d1w4xa2 | 235 | Phenylacetone monooxygenase {Thermobifida fusca [T | 97.69 | |
| d1lqta1 | 216 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 97.62 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 97.62 | |
| d1w4xa2 | 235 | Phenylacetone monooxygenase {Thermobifida fusca [T | 97.59 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 97.59 | |
| d1kf6a2 | 311 | Fumarate reductase {Escherichia coli [TaxId: 562]} | 97.51 | |
| d1m6ia3 | 131 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 97.5 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 97.5 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 97.47 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 97.42 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 97.36 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 97.29 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 97.27 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 97.26 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 97.24 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 97.22 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 97.22 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 97.2 | |
| d3lada3 | 124 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 97.18 | |
| d1v59a3 | 123 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 97.12 | |
| d1neka2 | 330 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 97.06 | |
| d1dxla3 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 97.0 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 96.99 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 96.98 | |
| d1ojta3 | 128 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 96.89 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 96.78 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 96.7 | |
| d1gesa3 | 115 | Glutathione reductase {Escherichia coli [TaxId: 56 | 96.45 | |
| d1lvla3 | 123 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 96.24 | |
| d1h6va3 | 133 | Mammalian thioredoxin reductase {Rat (Rattus norve | 96.22 | |
| d3grsa3 | 115 | Glutathione reductase {Human (Homo sapiens) [TaxId | 96.03 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 96.03 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 95.94 | |
| d1feca3 | 128 | Trypanothione reductase {Crithidia fasciculata [Ta | 95.86 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 95.84 | |
| d1fcda2 | 141 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 95.81 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 95.79 | |
| d1jnra2 | 356 | Adenylylsulfate reductase A subunit {Archaeon Arch | 95.63 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 95.63 | |
| d1onfa3 | 119 | Glutathione reductase {Plasmodium falciparum [TaxI | 95.45 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 95.22 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 95.04 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 94.95 | |
| d1jnra2 | 356 | Adenylylsulfate reductase A subunit {Archaeon Arch | 94.93 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 94.89 | |
| d1xdia2 | 118 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 94.76 | |
| d1ebda3 | 115 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 94.71 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 94.63 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 94.48 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 94.4 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 94.28 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 94.28 | |
| d1fcda2 | 141 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 94.12 | |
| d1gpea1 | 391 | Glucose oxidase {Penicillium amagasakiense [TaxId: | 93.8 | |
| d1gpea1 | 391 | Glucose oxidase {Penicillium amagasakiense [TaxId: | 93.51 | |
| d1cf3a1 | 385 | Glucose oxidase {Aspergillus niger [TaxId: 5061]} | 93.17 | |
| d1ju2a1 | 351 | Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI | 93.12 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 93.03 | |
| d1cf3a1 | 385 | Glucose oxidase {Aspergillus niger [TaxId: 5061]} | 93.03 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 92.87 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 92.79 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 92.75 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 92.49 | |
| d1ju2a1 | 351 | Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI | 92.08 | |
| d1m6ia3 | 131 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 91.48 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 91.43 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 91.38 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 91.2 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 90.79 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 90.76 | |
| d1mo9a3 | 140 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 90.44 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 90.3 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 89.78 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 89.73 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 89.68 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 89.66 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 89.61 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 89.52 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 89.41 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 89.36 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 89.18 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 89.07 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 88.93 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 88.8 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 88.27 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 87.94 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 87.61 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 87.49 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 87.33 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 87.23 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 86.89 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 86.88 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 86.71 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 86.71 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 86.51 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 86.39 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 86.23 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 86.15 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 85.83 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 85.81 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 85.35 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 85.34 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 84.98 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 84.84 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 84.63 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 84.55 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 84.21 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 84.13 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 83.84 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 83.82 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 82.97 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 82.81 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 82.79 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 82.2 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 82.14 | |
| d1nhpa3 | 126 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 82.03 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 82.0 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 81.54 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 81.49 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 80.78 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 80.67 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 80.43 |
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=1.7e-22 Score=215.27 Aligned_cols=207 Identities=19% Similarity=0.296 Sum_probs=150.7
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhccCcccccccChhhhccCCcEEEcCCeEEEe
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKIISD 1145 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i 1145 (1466)
..++||||||++|+.+|.+||+.+++++|++|++++++||+|++|++.+.......... . ..+.........
T Consensus 4 ~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~py~r~~Ls~~~~~~~~~~~~~------~--~~~~~~~~~~~~ 75 (213)
T d1m6ia1 4 HVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTK------T--LRFKQWNGKERS 75 (213)
T ss_dssp EEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHH------H--CEEECTTSCEEE
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCCccccccceecccccCchhhh------h--hhhhhcccchhh
Confidence 46799999999999999999999999999999999999999999998875221111000 0 111111101111
Q ss_pred ecCCCCeEEecCCcEEecCeEEEecCCCCCcCCCCCCCCcEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHHHh
Q psy2951 1146 SELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCA 1225 (1466)
Q Consensus 1146 ~d~~~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~ 1225 (1466)
+.+.+.+ .. .. ....
T Consensus 76 -------~~~~~~~---------------~~--~~-----------~~~~------------------------------ 90 (213)
T d1m6ia1 76 -------IYFQPPS---------------FY--VS-----------AQDL------------------------------ 90 (213)
T ss_dssp -------SBSSCGG---------------GS--BC-----------TTTT------------------------------
T ss_pred -------hhcCChh---------------hh--hh-----------hhhH------------------------------
Confidence 1111111 00 00 0000
Q ss_pred cCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeecccc
Q psy2951 1226 SKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVL 1305 (1466)
Q Consensus 1226 ~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p 1305 (1466)
..++++||+++++++|++|+ .++ + .|.++||++++||.+|+|+|..|
T Consensus 91 -----------------------------~~~~~~gI~~~~g~~V~~id-~~~-~--~V~l~dG~~i~~d~lViAtG~~~ 137 (213)
T d1m6ia1 91 -----------------------------PHIENGGVAVLTGKKVVQLD-VRD-N--MVKLNDGSQITYEKCLIATGGTE 137 (213)
T ss_dssp -----------------------------TTSTTCEEEEEETCCEEEEE-GGG-T--EEEETTSCEEEEEEEEECCCEEE
T ss_pred -----------------------------HHHHHCCeEEEeCCEEEEee-ccC-c--eeeeccceeeccceEEEeeeeec
Confidence 01235678999999999998 333 2 48899999999999999999765
Q ss_pred C-ccccccCCceeeC-CCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCCCCCC
Q psy2951 1306 N-TNYLDGKGVELNG-QKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSL 1381 (1466)
Q Consensus 1306 ~-~~~~~~~gl~~~~-~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~~~~ 1381 (1466)
+ +++....|+.+++ .|.|.||++|||+ |+|||+|||+.++... .+..++++|+.|+.||+.||+||+|...+|
T Consensus 138 ~~~~l~~~~gl~~~~~~~~i~vd~~l~~~-~~VyA~GD~a~~~~~~--~g~~~i~~~~~A~~~gr~aa~ni~g~~~~y 212 (213)
T d1m6ia1 138 PNVELAKTGGLEIDSDFGGFRVNAELQAR-SNIWVAGDAACFYDIK--LGRRRVEHHDHAVVSGRLAGENMTGAAKPY 212 (213)
T ss_dssp ECCTTHHHHTCCBCTTTCSEECCTTCEEE-TTEEECGGGEEEEETT--TEEECCCCHHHHHHHHHHHHHHHTSCCCCC
T ss_pred chhhhhhccchhhhhhhhhhhhhHhcCcC-CceEEeeeeeeecccc--CCcEEeeEhHHHHHHHHHHHHHhcCCCCCC
Confidence 5 4677778888754 4689999999998 9999999999998765 345689999999999999999999987765
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.81 E-value=8.2e-20 Score=193.02 Aligned_cols=189 Identities=22% Similarity=0.365 Sum_probs=152.2
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchhcc---cCcccccccCHhHhhhCCcEEEEceEEE
Q psy2951 596 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD---IKADSILLRTEEFYKDNDIHVIKGKKII 672 (1466)
Q Consensus 596 ~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~gv~~~~~~~v~ 672 (1466)
+||+|||||++|+.+|..|++.+.+.+|+++++.+.+.|..+.+...+. ...+.+.....+.+++.||+++++++|.
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~V~ 80 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEIT 80 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEE
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcccccccCcchhhcccccchHHHHHhhHHHHHHCCcEEEEeecee
Confidence 5899999999999999999999999999999998887777666554443 2345666677788999999999999999
Q ss_pred EeccccccEEEcc---CC--CEEecCEEEEcCCCCCCcCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCChHHH
Q psy2951 673 SDSELNEKKIKLQ---DG--TSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGM 747 (1466)
Q Consensus 673 ~i~~~~~~~v~~~---~~--~~~~~d~lviAtG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~ 747 (1466)
.+ +.+.+.+++. ++ ..+.||.+|+|+|+.+..+.
T Consensus 81 ~i-~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~~~~---------------------------------------- 119 (198)
T d1nhpa1 81 AI-QPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELD---------------------------------------- 119 (198)
T ss_dssp EE-ETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCC----------------------------------------
T ss_pred eE-eeccccceeeecccccccccccceeeEeecceeeccc----------------------------------------
Confidence 99 8777776543 33 35789999999997653221
Q ss_pred HHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEE
Q psy2951 748 EAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVI 827 (1466)
Q Consensus 748 e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi 827 (1466)
T Consensus 120 -------------------------------------------------------------------------------- 119 (198)
T d1nhpa1 120 -------------------------------------------------------------------------------- 119 (198)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EccccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCC
Q psy2951 828 VGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK 907 (1466)
Q Consensus 828 ~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~ 907 (1466)
|..|++.+++. ++.++++|+|.+|+++||+.|+|||+|||+..+... .+....++++..|.+||+.||+||.+..
T Consensus 120 ---g~~~~~~~~~~-~~~~~~~G~i~vd~~~~T~~~~IyA~GD~a~~~~~~-~~~~~~~~~a~~A~~~g~~aa~ni~~~~ 194 (198)
T d1nhpa1 120 ---GVRPNTAWLKG-TLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNP-ADTEVNIALATNARKQGRFAVKNLEEPV 194 (198)
T ss_dssp ---CEEESCGGGTT-TSCBCTTSCBCCCTTCBCSSTTEEECGGGSCEEEGG-GTEEECCCCHHHHHHHHHHHHHTSSSCC
T ss_pred ---ccccccccccc-cceeccCCceecCCcccccccceEEecceeeccccc-CCCcccccHHHHHHHHHHHHHHhhCCCC
Confidence 55666666665 577888999999999999999999999999877654 4556677889999999999999998776
Q ss_pred CcC
Q psy2951 908 TSL 910 (1466)
Q Consensus 908 ~~~ 910 (1466)
.++
T Consensus 195 ~~f 197 (198)
T d1nhpa1 195 KPF 197 (198)
T ss_dssp CCC
T ss_pred CCC
Confidence 554
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.80 E-value=5.2e-20 Score=191.95 Aligned_cols=163 Identities=18% Similarity=0.253 Sum_probs=128.6
Q ss_pred CeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHH----------HHHHHhCCcEEEcCceEEEEEe
Q psy2951 1206 SNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERI----------TKLFESKGVKFVMKANVSSFEK 1275 (1466)
Q Consensus 1206 ~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l----------~~~~~~~gv~~~~~~~v~~i~~ 1275 (1466)
.+|+|||+|++|+|+|..|++.|.+++++.+.+.++.....+.++..+ .+.....+|+++.+.+++++.
T Consensus 4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~- 82 (183)
T d1d7ya1 4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFD- 82 (183)
T ss_dssp SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTTHHHHCCGGGSBCCGGGSTTCEEEETCCEEEEE-
T ss_pred CCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccchhhHHHhhhhhhhhhhhhHHHHHhhcCCeEEEEeccccccc-
Confidence 459999999999999999999998777766554443222112121111 123456699999999999998
Q ss_pred cCCCcEEEEEcCCCCeeecCEEEEeeccccCccc-----cccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccC
Q psy2951 1276 NEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNY-----LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSF 1350 (1466)
Q Consensus 1276 ~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~~~~-----~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~ 1350 (1466)
.+. . .+.++||+++++|.|++|+|..|++.+ +...|+..+ ++|.||+++||+.|+|||+|||+..++..
T Consensus 83 ~~~-~--~~~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~gl~~~--~~I~vd~~~~ts~~~IyA~GD~a~~~~~~- 156 (183)
T d1d7ya1 83 PQA-H--TVALSDGRTLPYGTLVLATGAAPRAVLANDALARAAGLACD--DGIFVDAYGRTTCPDVYALGDVTRQRNPL- 156 (183)
T ss_dssp TTT-T--EEEETTSCEEECSEEEECCCEEECCEEECCHHHHHTTCCBS--SSEECCTTCBCSSTTEEECGGGEEEECTT-
T ss_pred ccc-c--eeEecCCcEeeeeeEEEEEEEEcccccccccccceeeEeeC--CcEEeccceeccccccchhhhhhccceee-
Confidence 333 2 367899999999999999999998653 445666654 45999999999999999999999998876
Q ss_pred CCceeeeecHHHHHHHHHHHHHHhc
Q psy2951 1351 YNKNASIGHYQLAQYHGRIAALNMV 1375 (1466)
Q Consensus 1351 ~~~~~~~~~~~~A~~qa~~aa~~i~ 1375 (1466)
.|.+.++++|..|.+||+.||+||+
T Consensus 157 ~g~~~~~~~~~~A~~qg~~aa~nil 181 (183)
T d1d7ya1 157 SGRFERIETWSNAQNQGIAVARHLV 181 (183)
T ss_dssp TCSEEECCCHHHHHHHHHHHHHHHH
T ss_pred CCceechhHHHHHHHHHHHHHHHHc
Confidence 6888899999999999999999997
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.78 E-value=1.2e-18 Score=184.04 Aligned_cols=172 Identities=26% Similarity=0.347 Sum_probs=133.2
Q ss_pred eEEEEcCCHHHHHHHHHHhcC--CCeEEEEcCCCcCCccc--cc----------HHHHHHHHHHHHhCCcEEEcCceEEE
Q psy2951 1207 NVVVIGSSFIGMEAAAFCASK--VKSVTVVGRGAVPFQES--LG----------KEVGERITKLFESKGVKFVMKANVSS 1272 (1466)
Q Consensus 1207 ~vvVvG~g~~g~e~a~~l~~~--g~~v~vv~~~~~~~~~~--~~----------~~~~~~l~~~~~~~gv~~~~~~~v~~ 1272 (1466)
+|+|||+|++|+|+|..|++. +.+|+++++.+.+.... ++ ..+.....+.++++||+++++++|++
T Consensus 2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~V~~ 81 (198)
T d1nhpa1 2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEITA 81 (198)
T ss_dssp EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcccccccCcchhhcccccchHHHHHhhHHHHHHCCcEEEEeeceee
Confidence 699999999999999999987 45899999876542100 11 11112234568899999999999999
Q ss_pred EEecCCCcEEEEEcCCCC--eeecCEEEEeecccc--------CccccccCCceeeCCCeEEeCCCccccCCCEEEeccc
Q psy2951 1273 FEKNEKNDVTAANLDNGT--TIPADLVIVGIGTVL--------NTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDI 1342 (1466)
Q Consensus 1273 i~~~~~g~~~~v~l~~g~--~i~~D~vv~a~G~~p--------~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~ 1342 (1466)
++ .++..+....+.+|+ ++++|.+|+++|..| ++.+++. ++.++.+|+|.||++++|+.|+|||+|||
T Consensus 82 i~-~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~~~~g~~~~~~~~~~-~~~~~~~G~i~vd~~~~T~~~~IyA~GD~ 159 (198)
T d1nhpa1 82 IQ-PKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDGVRPNTAWLKG-TLELHPNGLIKTDEYMRTSEPDVFAVGDA 159 (198)
T ss_dssp EE-TTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCEEESCGGGTT-TSCBCTTSCBCCCTTCBCSSTTEEECGGG
T ss_pred Ee-eccccceeeecccccccccccceeeEeecceeecccccccccccccc-cceeccCCceecCCcccccccceEEecce
Confidence 98 444333323356664 578999999998764 4555554 67788899999999999999999999999
Q ss_pred ccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCCCCCC
Q psy2951 1343 AYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSL 1381 (1466)
Q Consensus 1343 a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~~~~ 1381 (1466)
+..+... .+...++++|..|..||+.||+||.+...||
T Consensus 160 a~~~~~~-~~~~~~~~~a~~A~~~g~~aa~ni~~~~~~f 197 (198)
T d1nhpa1 160 TLIKYNP-ADTEVNIALATNARKQGRFAVKNLEEPVKPF 197 (198)
T ss_dssp SCEEEGG-GTEEECCCCHHHHHHHHHHHHHTSSSCCCCC
T ss_pred eeccccc-CCCcccccHHHHHHHHHHHHHHhhCCCCCCC
Confidence 9987654 4667788999999999999999999876654
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.78 E-value=9.4e-19 Score=165.39 Aligned_cols=119 Identities=29% Similarity=0.468 Sum_probs=112.3
Q ss_pred CCCCCCCC-cEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHH
Q psy2951 1177 ISQADGVN-KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITK 1255 (1466)
Q Consensus 1177 ~~~~~g~~-~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~ 1255 (1466)
|++| |.+ ++|++|+++|+.++++.+.++++++|||+|++|+|+|..|+++|.+||++++.++++++.+++++++.+.+
T Consensus 2 P~ip-G~~~~v~~lrtl~Da~~l~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~ 80 (121)
T d1d7ya2 2 PTLQ-GATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVAR 80 (121)
T ss_dssp GGGT-TCSSCEEECCSHHHHHHHHHHCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHH
T ss_pred ccCC-CCCCCEEEeCCHHHHHHHHHhhhcCCeEEEECcchhHHHHHHHhhcccceEEEEeeccccccccCCHHHHHHHHH
Confidence 6788 888 89999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred HHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeec
Q psy2951 1256 LFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 1302 (1466)
Q Consensus 1256 ~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G 1302 (1466)
.++++||+++++..|+++. ++ .|.++||++++||+||+|+|
T Consensus 81 ~l~~~GV~i~~~~~v~~~~--~~----~v~l~dg~~i~~D~vi~a~G 121 (121)
T d1d7ya2 81 YHAAQGVDLRFERSVTGSV--DG----VVLLDDGTRIAADMVVVGIG 121 (121)
T ss_dssp HHHTTTCEEEESCCEEEEE--TT----EEEETTSCEEECSEEEECSC
T ss_pred HHHHCCcEEEeCCEEEEEe--CC----EEEECCCCEEECCEEEEeeC
Confidence 9999999999999999987 22 37899999999999999987
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=7.1e-20 Score=194.74 Aligned_cols=118 Identities=19% Similarity=0.301 Sum_probs=98.7
Q ss_pred HHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccC-ccccccCCceeeC-CCcEEeCCCCCCCCC
Q psy2951 786 FESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLN-TNYLDGKGVELNG-QKAVVVNEYLETNVP 863 (1466)
Q Consensus 786 l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~gl~~~~-~G~i~vd~~~~t~~~ 863 (1466)
+++.||+++++++|++|+..+. .|.++||+++++|.+|+|+|..|+ +.+.+..|+++++ .|.|.||++|||+ |
T Consensus 93 ~~~~gI~~~~g~~V~~id~~~~----~V~l~dG~~i~~d~lViAtG~~~~~~~l~~~~gl~~~~~~~~i~vd~~l~~~-~ 167 (213)
T d1m6ia1 93 IENGGVAVLTGKKVVQLDVRDN----MVKLNDGSQITYEKCLIATGGTEPNVELAKTGGLEIDSDFGGFRVNAELQAR-S 167 (213)
T ss_dssp STTCEEEEEETCCEEEEEGGGT----EEEETTSCEEEEEEEEECCCEEEECCTTHHHHTCCBCTTTCSEECCTTCEEE-T
T ss_pred HHHCCeEEEeCCEEEEeeccCc----eeeeccceeeccceEEEeeeeecchhhhhhccchhhhhhhhhhhhhHhcCcC-C
Confidence 4567999999999999984322 578899999999999999997755 4677777888754 4889999999998 9
Q ss_pred CeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCCcC
Q psy2951 864 GVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSL 910 (1466)
Q Consensus 864 ~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~~~ 910 (1466)
+|||+|||+..+... . ....+++|+.|+.||+.||+||+|...+|
T Consensus 168 ~VyA~GD~a~~~~~~-~-g~~~i~~~~~A~~~gr~aa~ni~g~~~~y 212 (213)
T d1m6ia1 168 NIWVAGDAACFYDIK-L-GRRRVEHHDHAVVSGRLAGENMTGAAKPY 212 (213)
T ss_dssp TEEECGGGEEEEETT-T-EEECCCCHHHHHHHHHHHHHHHTSCCCCC
T ss_pred ceEEeeeeeeecccc-C-CcEEeeEhHHHHHHHHHHHHHhcCCCCCC
Confidence 999999999988765 2 34578999999999999999999986543
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.77 E-value=3.2e-19 Score=185.83 Aligned_cols=165 Identities=18% Similarity=0.255 Sum_probs=128.1
Q ss_pred CCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHH----------HHHHHhcCcEEEccceEEEEE
Q psy2951 734 ESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERI----------TKLFESKGVKFVMKANVSSFE 803 (1466)
Q Consensus 734 ~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~----------~~~l~~~gv~~~~~~~v~~i~ 803 (1466)
..+|+|||||++|+|+|..|+++|.+++++.+.+....+...+.+...+ .+.+...+|+++.+.+++++.
T Consensus 3 ~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~ 82 (183)
T d1d7ya1 3 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFD 82 (183)
T ss_dssp CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTTHHHHCCGGGSBCCGGGSTTCEEEETCCEEEEE
T ss_pred CCCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccchhhHHHhhhhhhhhhhhhHHHHHhhcCCeEEEEeccccccc
Confidence 4569999999999999999999998888877666544221111111111 122345699999999999998
Q ss_pred ecCCCceEEEECCCCcEEecCEEEEccccccCcccc-----ccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcc
Q psy2951 804 KNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYL-----DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHS 878 (1466)
Q Consensus 804 ~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~-----~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~ 878 (1466)
.. .. .+.+++|+++++|.+|+|+|..|++.++ ...++.. ++.|.||+++||+.|+|||+|||+..+...
T Consensus 83 ~~-~~---~~~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~gl~~--~~~I~vd~~~~ts~~~IyA~GD~a~~~~~~ 156 (183)
T d1d7ya1 83 PQ-AH---TVALSDGRTLPYGTLVLATGAAPRAVLANDALARAAGLAC--DDGIFVDAYGRTTCPDVYALGDVTRQRNPL 156 (183)
T ss_dssp TT-TT---EEEETTSCEEECSEEEECCCEEECCEEECCHHHHHTTCCB--SSSEECCTTCBCSSTTEEECGGGEEEECTT
T ss_pred cc-cc---eeEecCCcEeeeeeEEEEEEEEcccccccccccceeeEee--CCcEEeccceeccccccchhhhhhccceee
Confidence 33 22 4678899999999999999999986543 3445544 456999999999999999999999988765
Q ss_pred cCCceeeeccHHHHHHHHHHHHHHhcc
Q psy2951 879 FYNKNASIGHYQLAQYHGRIAALNMVE 905 (1466)
Q Consensus 879 ~~~~~~~~~~~~~A~~~g~~aA~~i~~ 905 (1466)
.+....+++|..|..||+.+|+||+.
T Consensus 157 -~g~~~~~~~~~~A~~qg~~aa~nil~ 182 (183)
T d1d7ya1 157 -SGRFERIETWSNAQNQGIAVARHLVD 182 (183)
T ss_dssp -TCSEEECCCHHHHHHHHHHHHHHHHC
T ss_pred -CCceechhHHHHHHHHHHHHHHHHcC
Confidence 56777789999999999999999974
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.75 E-value=1.7e-18 Score=181.23 Aligned_cols=167 Identities=18% Similarity=0.250 Sum_probs=132.5
Q ss_pred CCCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccc--------------cHHHHHHHHHHHHhCCcEEEcCce
Q psy2951 1204 PESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESL--------------GKEVGERITKLFESKGVKFVMKAN 1269 (1466)
Q Consensus 1204 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~--------------~~~~~~~l~~~~~~~gv~~~~~~~ 1269 (1466)
..++|+|||+|++|+|+|..|+++|.+++++.+.+.+..... ...............++.+..+..
T Consensus 2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (185)
T d1q1ra1 2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQ 81 (185)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCC
T ss_pred CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchhhhHHHHHHHHhhhhhhhhhhhhhhhhcccceeeeccce
Confidence 368999999999999999999999998887765543321100 111222234556778888998988
Q ss_pred EEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccC---ccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCC
Q psy2951 1270 VSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLN---TNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 1346 (1466)
Q Consensus 1270 v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~---~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p 1346 (1466)
+..+. .+. ..+.+.++.++++|.+++++|..|+ .++++..++..+ |++.||+++||+.|+|||+|||+..+
T Consensus 82 ~~~~~-~~~---~~v~~~~~~~i~~d~~i~~~G~~~~~~~~~~~~~~~~~~~--~~i~Vd~~~~ts~~~vya~GD~~~~~ 155 (185)
T d1q1ra1 82 VTAIN-RDR---QQVILSDGRALDYDRLVLATGGRPLIPNCELASAAGLQVD--NGIVINEHMQTSDPLIMAVGDCARFH 155 (185)
T ss_dssp EEEEE-TTT---TEEEETTSCEEECSEEEECCCEEEEEECCHHHHHTTCCBS--SSEECCTTSBCSSTTEEECGGGEEEE
T ss_pred eeeec-ccc---cEEEeeceeEEEeeeeeeeeecccCCCCchhHHhCCcccc--CccccCCccccchhhhhcchhhhccc
Confidence 88887 333 2477889999999999999998775 446677777654 56999999999999999999999998
Q ss_pred CccCCCceeeeecHHHHHHHHHHHHHHhcCC
Q psy2951 1347 LHSFYNKNASIGHYQLAQYHGRIAALNMVEK 1377 (1466)
Q Consensus 1347 ~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~ 1377 (1466)
... ++.+.++++|+.|.+||+.||+||+|+
T Consensus 156 ~~~-~~~~~~~~~a~~A~~~g~~aa~~i~G~ 185 (185)
T d1q1ra1 156 SQL-YDRWVRIESVPNALEQARKIAAILCGK 185 (185)
T ss_dssp ETT-TTEEEECCSHHHHHHHHHHHHHHHTTC
T ss_pred ccc-CCcccchhhHHHHHHHHHHHHHHccCC
Confidence 875 688889999999999999999999985
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.75 E-value=3.9e-18 Score=174.81 Aligned_cols=156 Identities=19% Similarity=0.276 Sum_probs=123.5
Q ss_pred CeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcc--cccHH---------HHHHHHHHHHhCCcEEEcCceEEEEE
Q psy2951 1206 SNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQE--SLGKE---------VGERITKLFESKGVKFVMKANVSSFE 1274 (1466)
Q Consensus 1206 ~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~--~~~~~---------~~~~l~~~~~~~gv~~~~~~~v~~i~ 1274 (1466)
.||+|||+|++|+|+|..|++ +.+||++++.+.+... .+... +.....+.+++.++++++++.+++++
T Consensus 1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~ 79 (167)
T d1xhca1 1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLID 79 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEEEE
T ss_pred CeEEEECCcHHHHHHHHHHHc-CCCEEEEeccccccccccchhhhhhhhhhhhhhhHHHHHHHHhccceeeeeccccccc
Confidence 379999999999999999976 6799999987754321 11111 11222456788899999999999997
Q ss_pred ecCCCcEEEEEcCCCCeeecCEEEEeeccccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCce
Q psy2951 1275 KNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKN 1354 (1466)
Q Consensus 1275 ~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~ 1354 (1466)
.. .+ +.+.++.++++|.+++|+|..|+ ++++.+|+..+. .|.||+++||+.|+|||+|||+..+...
T Consensus 80 -~~-~~---~~~~~~~~i~~D~li~a~G~~~~-~~~~~~gl~~~~--~i~v~~~~~t~~~~i~aiGD~~~~~~~~----- 146 (167)
T d1xhca1 80 -RG-RK---VVITEKGEVPYDTLVLATGAPNV-DLARRSGIHTGR--GILIDDNFRTSAKDVYAIGDCAEYSGII----- 146 (167)
T ss_dssp -TT-TT---EEEESSCEEECSEEEECCCEECC-HHHHHTTCCBSS--SEECCTTSBCSSTTEEECGGGEEBTTBC-----
T ss_pred -cc-cc---cccccccccccceeEEEEEecCC-chhhhcCceeCC--ceeeccccEecCCCeEEeeecccCCCeE-----
Confidence 32 22 45667889999999999998764 788888998763 4999999999999999999999877643
Q ss_pred eeeecHHHHHHHHHHHHHHhcCC
Q psy2951 1355 ASIGHYQLAQYHGRIAALNMVEK 1377 (1466)
Q Consensus 1355 ~~~~~~~~A~~qa~~aa~~i~g~ 1377 (1466)
+..++.|.+||+.+|+||+|+
T Consensus 147 --~~~~~~a~~~a~~~a~~i~Ge 167 (167)
T d1xhca1 147 --AGTAKAAMEQARVLADILKGE 167 (167)
T ss_dssp --CCSHHHHHHHHHHHHHHHTTC
T ss_pred --EChHHHHHHHHHHHHHHcCCC
Confidence 346789999999999999985
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.74 E-value=1.2e-17 Score=157.59 Aligned_cols=120 Identities=28% Similarity=0.459 Sum_probs=111.7
Q ss_pred cCCCCCCCC-cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHH
Q psy2951 705 TISQADGVN-KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERIT 783 (1466)
Q Consensus 705 ~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~ 783 (1466)
.|++| |.+ .++++++++|+.++.+.+.++++++|||||++|+|+|..|+++|++||++++.++++...+++++++.+.
T Consensus 1 iP~ip-G~~~~v~~lrtl~Da~~l~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~ 79 (121)
T d1d7ya2 1 LPTLQ-GATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVA 79 (121)
T ss_dssp CGGGT-TCSSCEEECCSHHHHHHHHHHCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHH
T ss_pred CccCC-CCCCCEEEeCCHHHHHHHHHhhhcCCeEEEECcchhHHHHHHHhhcccceEEEEeeccccccccCCHHHHHHHH
Confidence 37788 877 7999999999999999998999999999999999999999999999999999999987789999999999
Q ss_pred HHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccc
Q psy2951 784 KLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 831 (1466)
Q Consensus 784 ~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G 831 (1466)
+.++++||+++++..++++..+ .+.++||++++||+||+|+|
T Consensus 80 ~~l~~~GV~i~~~~~v~~~~~~------~v~l~dg~~i~~D~vi~a~G 121 (121)
T d1d7ya2 80 RYHAAQGVDLRFERSVTGSVDG------VVLLDDGTRIAADMVVVGIG 121 (121)
T ss_dssp HHHHTTTCEEEESCCEEEEETT------EEEETTSCEEECSEEEECSC
T ss_pred HHHHHCCcEEEeCCEEEEEeCC------EEEECCCCEEECCEEEEeeC
Confidence 9999999999999999998832 57789999999999999998
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.73 E-value=6.8e-18 Score=176.54 Aligned_cols=167 Identities=18% Similarity=0.242 Sum_probs=131.2
Q ss_pred CCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccC--------------HHHHHHHHHHHHhcCcEEEccce
Q psy2951 733 PESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLG--------------KEVGERITKLFESKGVKFVMKAN 798 (1466)
Q Consensus 733 ~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~--------------~~~~~~~~~~l~~~gv~~~~~~~ 798 (1466)
..++|+|||||++|+|+|..|+++|.+++++.+.+....+... ..............++.+..+..
T Consensus 2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (185)
T d1q1ra1 2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQ 81 (185)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCC
T ss_pred CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchhhhHHHHHHHHhhhhhhhhhhhhhhhhcccceeeeccce
Confidence 3689999999999999999999999998888776643221111 11112223456677888888888
Q ss_pred EEEEEecCCCceEEEECCCCcEEecCEEEEccccccC---ccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccC
Q psy2951 799 VSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLN---TNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAP 875 (1466)
Q Consensus 799 v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~---~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~ 875 (1466)
+..+... .. .+.+.++.++++|.+++++|.+|+ ..+++..++.. +|.+.||+++||+.|+|||+|||+..+
T Consensus 82 ~~~~~~~-~~---~v~~~~~~~i~~d~~i~~~G~~~~~~~~~~~~~~~~~~--~~~i~Vd~~~~ts~~~vya~GD~~~~~ 155 (185)
T d1q1ra1 82 VTAINRD-RQ---QVILSDGRALDYDRLVLATGGRPLIPNCELASAAGLQV--DNGIVINEHMQTSDPLIMAVGDCARFH 155 (185)
T ss_dssp EEEEETT-TT---EEEETTSCEEECSEEEECCCEEEEEECCHHHHHTTCCB--SSSEECCTTSBCSSTTEEECGGGEEEE
T ss_pred eeeeccc-cc---EEEeeceeEEEeeeeeeeeecccCCCCchhHHhCCccc--cCccccCCccccchhhhhcchhhhccc
Confidence 8888732 22 567788899999999999998775 44556666654 467999999999999999999999988
Q ss_pred CcccCCceeeeccHHHHHHHHHHHHHHhccC
Q psy2951 876 LHSFYNKNASIGHYQLAQYHGRIAALNMVEK 906 (1466)
Q Consensus 876 ~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~ 906 (1466)
... ++.+..+++|+.|.+||+.||+||+|+
T Consensus 156 ~~~-~~~~~~~~~a~~A~~~g~~aa~~i~G~ 185 (185)
T d1q1ra1 156 SQL-YDRWVRIESVPNALEQARKIAAILCGK 185 (185)
T ss_dssp ETT-TTEEEECCSHHHHHHHHHHHHHHHTTC
T ss_pred ccc-CCcccchhhHHHHHHHHHHHHHHccCC
Confidence 765 667778899999999999999999985
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.73 E-value=2e-17 Score=159.55 Aligned_cols=118 Identities=35% Similarity=0.524 Sum_probs=111.1
Q ss_pred cEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEE
Q psy2951 1185 KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKF 1264 (1466)
Q Consensus 1185 ~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~ 1264 (1466)
+++++++++|+.++++.+..+++++|||+|++|+|+|..|++.|.+||++++.++++++.+++++++.+.+.++++||++
T Consensus 15 ~v~~lr~~~d~~~l~~~~~~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~~~~~~~~~~~~~~~~~GV~i 94 (133)
T d1q1ra2 15 NFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDI 94 (133)
T ss_dssp TEEESSSHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEE
T ss_pred CeeEeCCHHHHHHHHHhhccCCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccccccchhhhhhhhhcccccccEE
Confidence 79999999999999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred EcCceEEEEEec-CCCcEEEEEcCCCCeeecCEEEEeec
Q psy2951 1265 VMKANVSSFEKN-EKNDVTAANLDNGTTIPADLVIVGIG 1302 (1466)
Q Consensus 1265 ~~~~~v~~i~~~-~~g~~~~v~l~~g~~i~~D~vv~a~G 1302 (1466)
++++++++++.. +++.+..|.++||+++++|+||+|+|
T Consensus 95 ~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G 133 (133)
T d1q1ra2 95 RTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG 133 (133)
T ss_dssp ECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred EeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence 999999999743 34567789999999999999999987
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.72 E-value=1.3e-17 Score=170.70 Aligned_cols=156 Identities=19% Similarity=0.284 Sum_probs=121.1
Q ss_pred CcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCcc--ccCHHH---------HHHHHHHHHhcCcEEEccceEEEEE
Q psy2951 735 SNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQE--SLGKEV---------GERITKLFESKGVKFVMKANVSSFE 803 (1466)
Q Consensus 735 ~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~--~~~~~~---------~~~~~~~l~~~gv~~~~~~~v~~i~ 803 (1466)
.||+|||+|++|+|+|..|++ +.+||++++.+.+... .++..+ .....+.+++.++++++++.++.++
T Consensus 1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~ 79 (167)
T d1xhca1 1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLID 79 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEEEE
T ss_pred CeEEEECCcHHHHHHHHHHHc-CCCEEEEeccccccccccchhhhhhhhhhhhhhhHHHHHHHHhccceeeeeccccccc
Confidence 379999999999999999976 6799999987653311 111111 1112456778899999999999997
Q ss_pred ecCCCceEEEECCCCcEEecCEEEEccccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCce
Q psy2951 804 KNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKN 883 (1466)
Q Consensus 804 ~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~ 883 (1466)
.+ . .+.+.++.++++|.+|+|+|..|+ .+++..|++.++ .+.+|+++||+.|+|||+|||+..+...
T Consensus 80 ~~--~---~~~~~~~~~i~~D~li~a~G~~~~-~~~~~~gl~~~~--~i~v~~~~~t~~~~i~aiGD~~~~~~~~----- 146 (167)
T d1xhca1 80 RG--R---KVVITEKGEVPYDTLVLATGAPNV-DLARRSGIHTGR--GILIDDNFRTSAKDVYAIGDCAEYSGII----- 146 (167)
T ss_dssp TT--T---TEEEESSCEEECSEEEECCCEECC-HHHHHTTCCBSS--SEECCTTSBCSSTTEEECGGGEEBTTBC-----
T ss_pred cc--c---ccccccccccccceeEEEEEecCC-chhhhcCceeCC--ceeeccccEecCCCeEEeeecccCCCeE-----
Confidence 32 2 234556778999999999998765 678888887754 4999999999999999999999876543
Q ss_pred eeeccHHHHHHHHHHHHHHhccC
Q psy2951 884 ASIGHYQLAQYHGRIAALNMVEK 906 (1466)
Q Consensus 884 ~~~~~~~~A~~~g~~aA~~i~~~ 906 (1466)
++.++.|+.||+.+|+||+|+
T Consensus 147 --~~~~~~a~~~a~~~a~~i~Ge 167 (167)
T d1xhca1 147 --AGTAKAAMEQARVLADILKGE 167 (167)
T ss_dssp --CCSHHHHHHHHHHHHHHHTTC
T ss_pred --EChHHHHHHHHHHHHHHcCCC
Confidence 357789999999999999874
|
| >d1q1ra3 d.87.1.1 (A:320-422) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.72 E-value=8.9e-18 Score=151.55 Aligned_cols=86 Identities=21% Similarity=0.415 Sum_probs=81.6
Q ss_pred CCCCCCccceeccccccEEEEeeCCCCceEEEcCCcCCceEEEEEEeCCEEEEEEEecCcHHHHHHHHHHHcCCCCChhc
Q psy2951 1379 TSLSTIPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTVGMDPLAAQFAERIKMQKYIQKDQ 1458 (1466)
Q Consensus 1379 ~~~~~~p~~w~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1458 (1466)
+++..+|||||+|||++||++|++..+++++++|++++..|++||+++|+|+|++++|++++++.+|++|+.+.++++++
T Consensus 2 p~~~~vP~FWSdQ~d~~lQ~~G~~~~~d~~v~rg~~~~~~f~~~y~~~~~lvav~~vn~~~~~~~~r~li~~~~~~~~~~ 81 (103)
T d1q1ra3 2 PRDEAAPWFWSDQYEIGLKMVGLSEGYDRIIVRGSLAQPDFSVFYLQGDRVLAVDTVNRPVEFNQSKQIITDRLPVEPNL 81 (103)
T ss_dssp CCCCCCCEEEEEETTEEEEEEECCTTCSEEEEEEETTTTEEEEEEEETTEEEEEEEESCHHHHHHHHHHHHTTCCCCHHH
T ss_pred CCCCCCCcEeeecCCCeeEEEECCCCCceEEEecCCCCCeEEEEEEeCCeEEEEEEeCCHHHHHHHHHHHHCCCCcCHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCc
Q psy2951 1459 IENNAW 1464 (1466)
Q Consensus 1459 ~~~~~~ 1464 (1466)
|+|.++
T Consensus 82 L~D~~~ 87 (103)
T d1q1ra3 82 LGDESV 87 (103)
T ss_dssp HTCTTS
T ss_pred hcCCCC
Confidence 988764
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.71 E-value=5.4e-18 Score=183.01 Aligned_cols=67 Identities=34% Similarity=0.393 Sum_probs=58.1
Q ss_pred ccccCccc--cccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCC
Q psy2951 831 GTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 908 (1466)
Q Consensus 831 G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~ 908 (1466)
|+.|+++. ++.+|+++++.|+|.||++++|++|+|||+|||+..|.. ++.|..+|+.||++|+|+..
T Consensus 150 gr~p~~~~l~l~~~gv~~~~~G~i~vd~~~~T~v~gi~A~GDv~~g~~l-----------~~~A~~~g~~aa~~i~g~~~ 218 (221)
T d1dxla1 150 GRTPFTSGLNLDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGPML-----------AHKAEEDGVACVEYLAGKVG 218 (221)
T ss_dssp CEEECCTTSCCTTTTCCBCSSSCBCCCTTCBCSSTTEEECSTTSSSCCC-----------HHHHHHHHHHHHHHHTTSCC
T ss_pred CccccCCCCChHhcCceEcCCCcEEeCCCcccCCCCEEEEeccCCCccc-----------HHHHHHHHHHHHHHHcCCCC
Confidence 55677663 578899999999999999999999999999999877654 37899999999999998764
|
| >d1d7ya3 d.87.1.1 (A:309-405) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.71 E-value=1.5e-17 Score=148.63 Aligned_cols=85 Identities=16% Similarity=0.263 Sum_probs=79.0
Q ss_pred CCCCCCccceeccccccEEEEeeCCCCceEEE-cCCcCCceEEEEEEeCCEEEEEEEecCcHHHHHHHHHHHcCCCCChh
Q psy2951 1379 TSLSTIPFFWTMLFGVGFRFAGYAAGHTQVDI-VGDLEALKFTAYYSNADKVLAILTVGMDPLAAQFAERIKMQKYIQKD 1457 (1466)
Q Consensus 1379 ~~~~~~p~~w~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1457 (1466)
.+|.++|||||+|||.+||++|.+..++++++ +|+.++..|++||+++|+|+|++++|++++++.+|++|+++++++++
T Consensus 3 ~~y~~vP~FWSdQ~d~~iq~~G~~~~~~~~v~~~~~~~~~~f~~~y~~~g~lvgv~~vn~~~~~~~~rrli~~~~~~~~~ 82 (97)
T d1d7ya3 3 PGYAELPWYWSDQGALRIQVAGLASGDEEIVRGEVSLDAPKFTLIELQKGRIVGATCVNNARDFAPLRRLLAVGAKPDRA 82 (97)
T ss_dssp CCCCCCCEEEEEETTEEEEEEECSCCSEEEEEEECCSSSCEEEEEEEETTEEEEEEEESCHHHHHHHHHHHHTTCCCCHH
T ss_pred CCCCCCCcEEeccCCCeeEEEecCCCCCEEEEeccCCCCCeEEEEEEeCCEEEEEEEeCCHHHHHHHHHHHHCCCCCCHH
Confidence 57999999999999999999999998888766 47777889999999999999999999999999999999999999999
Q ss_pred cccccC
Q psy2951 1458 QIENNA 1463 (1466)
Q Consensus 1458 ~~~~~~ 1463 (1466)
+|+|.+
T Consensus 83 ~LaD~~ 88 (97)
T d1d7ya3 83 ALADPA 88 (97)
T ss_dssp HHHSSC
T ss_pred HhcCCC
Confidence 998765
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.71 E-value=3.8e-18 Score=184.23 Aligned_cols=67 Identities=34% Similarity=0.393 Sum_probs=57.7
Q ss_pred ccccCccc--cccCCceecCCccEEECCCCCcCCCCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCCC
Q psy2951 279 GTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 356 (1466)
Q Consensus 279 G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~ 356 (1466)
|+.|+++. +++.|++++++|+|.||++++|++|+|||+|||+..|+ ++..|+.+|+.||++|+++..
T Consensus 150 gr~p~~~~l~l~~~gv~~~~~G~i~vd~~~~T~v~gi~A~GDv~~g~~-----------l~~~A~~~g~~aa~~i~g~~~ 218 (221)
T d1dxla1 150 GRTPFTSGLNLDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGPM-----------LAHKAEEDGVACVEYLAGKVG 218 (221)
T ss_dssp CEEECCTTSCCTTTTCCBCSSSCBCCCTTCBCSSTTEEECSTTSSSCC-----------CHHHHHHHHHHHHHHHTTSCC
T ss_pred CccccCCCCChHhcCceEcCCCcEEeCCCcccCCCCEEEEeccCCCcc-----------cHHHHHHHHHHHHHHHcCCCC
Confidence 56677764 47889999999999999999999999999999987664 356799999999999998764
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.67 E-value=1.3e-16 Score=151.64 Aligned_cols=119 Identities=29% Similarity=0.410 Sum_probs=107.0
Q ss_pred CCCCCC--cEEEecCHHHHHhhhcccC--CCCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHH
Q psy2951 1179 QADGVN--KVFYLRTVEDANNIAPHIT--PESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERIT 1254 (1466)
Q Consensus 1179 ~~~g~~--~v~~~~~~~~~~~l~~~~~--~~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~ 1254 (1466)
+| |.+ +++++++++|+.++++.+. .+++|+|||+|++|+|+|..|+++|.+||++++.++++++.+++++++.+.
T Consensus 1 IP-G~d~~~v~~~~~~~da~~i~~~~~~~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~~d~~~~~~~~ 79 (123)
T d1nhpa2 1 IP-GKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLT 79 (123)
T ss_dssp ST-TTTSBSEECCCHHHHHHHHHHHHTCTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHH
T ss_pred Cc-CCCCCCeEEeCCHHHHHHHHHHhhccCCCEEEEECChHHHHHHHHHhhccceEEEEEEecCcccccccchhhHHHHH
Confidence 35 665 9999999999999998775 478999999999999999999999999999999999999899999999999
Q ss_pred HHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEee
Q psy2951 1255 KLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 1301 (1466)
Q Consensus 1255 ~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~ 1301 (1466)
+.++++||++++++++++++ . ++++..+ +.||++++||+||+|+
T Consensus 80 ~~l~~~gv~~~~~~~v~~i~-~-~~~~~~v-~~dg~~i~~D~vi~aI 123 (123)
T d1nhpa2 80 EEMEANNITIATGETVERYE-G-DGRVQKV-VTDKNAYDADLVVVAV 123 (123)
T ss_dssp HHHHTTTEEEEESCCEEEEE-C-SSBCCEE-EESSCEEECSEEEECS
T ss_pred HHhhcCCeEEEeCceEEEEE-c-CCCEEEE-EeCCCEEECCEEEEEC
Confidence 99999999999999999998 3 4455444 6789999999999974
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=99.67 E-value=1.9e-19 Score=181.60 Aligned_cols=167 Identities=16% Similarity=0.166 Sum_probs=121.8
Q ss_pred CCCCCCC-eEEEEEEcCeEEEEEcccchhccccccccccccCCCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCC
Q psy2951 551 PGMDSLP-CYKVTIQNDDSVVVQARKDELKNKKRKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE 629 (1466)
Q Consensus 551 p~~~~l~-~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~ 629 (1466)
||+.|+. |+.- +..+..+.|.+||+ .+++. .++..+..++++|+|||||||||+||+.|+++|++ |+++|+.
T Consensus 3 ~Ci~C~~~C~~~-~~~~~~~~C~~Np~-~g~e~---~~~~~~~~~~k~V~IIGaGPAGL~AA~~la~~G~~--Vtl~E~~ 75 (179)
T d1ps9a3 3 TCIGCNQACLDQ-IFVGKVTSCLVNPR-ACHET---KMPILPAVQKKNLAVVGAGPAGLAFAINAAARGHQ--VTLFDAH 75 (179)
T ss_dssp CCCCCCTTTHHH-HHTTCCCCCSSCTT-TTCTT---TSCCCSCSSCCEEEEECCSHHHHHHHHHHHTTTCE--EEEEESS
T ss_pred cccccHHHHhhH-hhcCCeeEEeeCcc-ccCcc---ccccCCCCCCcEEEEECccHHHHHHHHHHHhhccc--eEEEecc
Confidence 6777764 6653 44677888999997 55542 23445667789999999999999999999999998 8888988
Q ss_pred CCCCCCCCccchh-cccCcccccccCHhHhhhCCcEEEEceEEEEeccccccEEEccCCCEEecCEEEEcCCCCCCcCCC
Q psy2951 630 NFLPYDRVKLSKQ-LDIKADSILLRTEEFYKDNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQ 708 (1466)
Q Consensus 630 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~ 708 (1466)
+.+++........ ......++..++.+++++.||++++|+.|+.. ....||+||+|||+.|+.+.+
T Consensus 76 ~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~~Vt~~-------------~~~~~d~vilAtG~~~~~~~~ 142 (179)
T d1ps9a3 76 SEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTAD-------------QLQAFDETILASGIPNRALAQ 142 (179)
T ss_dssp SSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCCSS-------------SSCCSSEEEECCCEECCTTHH
T ss_pred CccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCCEEccc-------------ccccceeEEEeecCCCccccc
Confidence 7776543211111 11344567778888888899999999965321 234799999999998887776
Q ss_pred CCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHH-HHHHhccC
Q psy2951 709 ADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEA-AAFCASKV 757 (1466)
Q Consensus 709 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~-A~~l~~~g 757 (1466)
| |.+ .+++++|+|+|++++++ +......|
T Consensus 143 p-g~~-------------------~g~~v~vigggd~a~~~~~~~Av~~G 172 (179)
T d1ps9a3 143 P-LID-------------------SGKTVHLIGGCDVAMELDARRAIAQG 172 (179)
T ss_dssp H-HHT-------------------TTCCEEECGGGTCCSSCCHHHHHHHH
T ss_pred c-hhc-------------------cCCEEEEECCcHhhhhccchhhhhcc
Confidence 6 432 38999999999998886 33333333
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.67 E-value=6.5e-17 Score=153.74 Aligned_cols=121 Identities=30% Similarity=0.456 Sum_probs=110.7
Q ss_pred CCCcCCCCCCCCcEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHH
Q psy2951 1173 SPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGER 1252 (1466)
Q Consensus 1173 ~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~ 1252 (1466)
+|+.|++| |.++++++++++|+.++.+.+..+++++|||+|++|+|+|..|+++|.+||++++.+.+++ +++++++.
T Consensus 1 R~r~p~ip-G~e~~~t~~~~~d~~~l~~~~~~~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~--~d~~~~~~ 77 (122)
T d1xhca2 1 RAREPQIK-GKEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG--LDEELSNM 77 (122)
T ss_dssp EECCCCSB-TGGGEECCCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT--CCHHHHHH
T ss_pred CCCCcCCC-CccceEccCCHHHHHHHHHHhhcCCcEEEECCcHHHHHHHHHhhcccceEEEEeccccccC--CCHHHHHH
Confidence 57889999 9889999999999999999888889999999999999999999999999999999998874 79999999
Q ss_pred HHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeecc
Q psy2951 1253 ITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGT 1303 (1466)
Q Consensus 1253 l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~ 1303 (1466)
+.+.++++||++++++++++++ +++ + +.+++++++|+||+|+|.
T Consensus 78 ~~~~l~~~GV~~~~~~~v~~~~--~~~----v-~~~~~~i~~D~vi~a~Gv 121 (122)
T d1xhca2 78 IKDMLEETGVKFFLNSELLEAN--EEG----V-LTNSGFIEGKVKICAIGI 121 (122)
T ss_dssp HHHHHHHTTEEEECSCCEEEEC--SSE----E-EETTEEEECSCEEEECCE
T ss_pred HHHHHHHCCcEEEeCCEEEEEe--CCE----E-EeCCCEEECCEEEEEEEe
Confidence 9999999999999999999997 332 2 457889999999999996
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.66 E-value=5e-16 Score=149.56 Aligned_cols=118 Identities=35% Similarity=0.517 Sum_probs=109.9
Q ss_pred cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEE
Q psy2951 714 KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKF 793 (1466)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~ 793 (1466)
+++++++++++..+.+.+..+++++|||||++|+|+|..|+++|.+||++++.++++...+++++.+.+.+.++++||++
T Consensus 15 ~v~~lr~~~d~~~l~~~~~~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~~~~~~~~~~~~~~~~~GV~i 94 (133)
T d1q1ra2 15 NFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDI 94 (133)
T ss_dssp TEEESSSHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEE
T ss_pred CeeEeCCHHHHHHHHHhhccCCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccccccchhhhhhhhhcccccccEE
Confidence 68899999999999988888999999999999999999999999999999999999877889999999999999999999
Q ss_pred EccceEEEEEecC-CCceEEEECCCCcEEecCEEEEccc
Q psy2951 794 VMKANVSSFEKNE-KNDVTAANLDNGTTIPADLVIVGIG 831 (1466)
Q Consensus 794 ~~~~~v~~i~~~~-~~~~~~v~~~~g~~i~~D~vi~a~G 831 (1466)
++++++++++... +..+..+.+++|+++++|.||+|+|
T Consensus 95 ~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G 133 (133)
T d1q1ra2 95 RTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG 133 (133)
T ss_dssp ECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred EeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence 9999999998643 4567789999999999999999998
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=1.4e-16 Score=171.60 Aligned_cols=65 Identities=34% Similarity=0.474 Sum_probs=54.9
Q ss_pred ccCccc--cccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCC
Q psy2951 833 VLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 908 (1466)
Q Consensus 833 ~p~~~~--~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~ 908 (1466)
.|+++. ++..|++++++|+|.||+++|||.|+|||+|||+..+.. .+.|..||+.||++|++...
T Consensus 150 ~p~~~~l~L~~~gv~~~~~G~I~vd~~~~T~~~gvyA~GDv~~~~~l-----------~~~A~~~G~~aa~~~~~~~~ 216 (221)
T d3grsa1 150 VPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALL-----------TPVAIAAGRKLAHRLFEYKE 216 (221)
T ss_dssp EESCTTTTGGGTTCCBCTTSCBCCCTTCBCSSTTEEECGGGGTSSCC-----------HHHHHHHHHHHHHHHHSCCT
T ss_pred ccCCCCcCchhcCcEECCCccEEeCCCccccCCcEEEEEEccCCcCc-----------HHHHHHHHHHHHHHHcCCCC
Confidence 455442 577899999999999999999999999999999876543 36899999999999998654
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.63 E-value=2e-16 Score=150.29 Aligned_cols=121 Identities=29% Similarity=0.454 Sum_probs=108.9
Q ss_pred CCCcCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHH
Q psy2951 702 SPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGER 781 (1466)
Q Consensus 702 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~ 781 (1466)
+|+.|++| |.+.+++++++.++..+.+.+..+++++|||||++|+|+|..|+++|.+||++++.+.++ .+++++.+.
T Consensus 1 R~r~p~ip-G~e~~~t~~~~~d~~~l~~~~~~~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~--~~d~~~~~~ 77 (122)
T d1xhca2 1 RAREPQIK-GKEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFL--GLDEELSNM 77 (122)
T ss_dssp EECCCCSB-TGGGEECCCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCT--TCCHHHHHH
T ss_pred CCCCcCCC-CccceEccCCHHHHHHHHHHhhcCCcEEEECCcHHHHHHHHHhhcccceEEEEecccccc--CCCHHHHHH
Confidence 47889999 999999999999999988887778999999999999999999999999999999999876 389999999
Q ss_pred HHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEcccc
Q psy2951 782 ITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGT 832 (1466)
Q Consensus 782 ~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 832 (1466)
+.+.|+++||++++++++++++. + .+ +.+++++++|+||+|+|.
T Consensus 78 ~~~~l~~~GV~~~~~~~v~~~~~--~----~v-~~~~~~i~~D~vi~a~Gv 121 (122)
T d1xhca2 78 IKDMLEETGVKFFLNSELLEANE--E----GV-LTNSGFIEGKVKICAIGI 121 (122)
T ss_dssp HHHHHHHTTEEEECSCCEEEECS--S----EE-EETTEEEECSCEEEECCE
T ss_pred HHHHHHHCCcEEEeCCEEEEEeC--C----EE-EeCCCEEECCEEEEEEEe
Confidence 99999999999999999999973 2 22 447789999999999995
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.63 E-value=1.3e-15 Score=164.44 Aligned_cols=161 Identities=25% Similarity=0.356 Sum_probs=120.6
Q ss_pred CcEEEECCChHHHHHHHHHhccCCeEEEEeecCcc----------------------------------CccccC-----
Q psy2951 735 SNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP----------------------------------FQESLG----- 775 (1466)
Q Consensus 735 ~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~----------------------------------~~~~~~----- 775 (1466)
..|+|||+|+.|+++|..+++.|.+|+++++...- ....+.
T Consensus 4 ~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (223)
T d1ebda1 4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFAKVQ 83 (223)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEecCCCCcceeccccccccccccccchhhhhhhhhhhcccchhheeeHHHHh
Confidence 46899999999999999999999999999876410 000011
Q ss_pred -------HHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEcc--------ccccCccc--
Q psy2951 776 -------KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI--------GTVLNTNY-- 838 (1466)
Q Consensus 776 -------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~--------G~~p~~~~-- 838 (1466)
..+...+...++..||+++.+.. .+.. ..........++.++.+|.+|+++ |++|+++.
T Consensus 84 ~~~~~~v~~l~~~~~~~~~~~~V~~i~G~a--~f~~--~~~~~v~~~~~~~~~~~~~iiIa~g~~p~~~~G~~p~~~~l~ 159 (223)
T d1ebda1 84 EWKASVVKKLTGGVEGLLKGNKVEIVKGEA--YFVD--ANTVRVVNGDSAQTYTFKNAIIATGSRPIELVGRRPNTDELG 159 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEEESEE--EEEE--TTEEEEEETTEEEEEECSEEEECCCEEECCBSCEEESCSSSS
T ss_pred hHHHHHHHHHHhhHHHhhhccceeeeccEE--EEcc--CcccceeccccceEEecccEEEEcCCCccccccceecCCCCC
Confidence 11123334556778999987642 2331 222223344455688999999984 88999885
Q ss_pred cccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCCcC
Q psy2951 839 LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSL 910 (1466)
Q Consensus 839 ~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~~~ 910 (1466)
++.+|++++++|+|.||+++|||.|+|||+|||+..+.. .+.|..||+.||++|+|++.++
T Consensus 160 l~~~gv~~~~~G~I~vd~~~~T~~~gvyA~GDv~~~~~~-----------~~~A~~~g~~aa~~i~g~~~~~ 220 (223)
T d1ebda1 160 LEQIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIVPGPAL-----------AHKASYEGKVAAEAIAGHPSAV 220 (223)
T ss_dssp TTTTTCCBCTTSCBCCCTTCBCSSTTEEECGGGSSSCCC-----------HHHHHHHHHHHHHHHTSCCCCC
T ss_pred hHhcCceECCCCCEeECCCCCCCCCCEEEEeccCCCccc-----------HHHHHHHHHHHHHHHcCCCCCC
Confidence 578899999999999999999999999999999887654 3689999999999999976543
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=3.4e-16 Score=168.60 Aligned_cols=65 Identities=34% Similarity=0.474 Sum_probs=54.7
Q ss_pred ccCccc--cccCCceecCCccEEECCCCCcCCCCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCCC
Q psy2951 281 VLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 356 (1466)
Q Consensus 281 ~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~ 356 (1466)
.||++. |+..|++++++|+|.||+++|||.|+|||+|||++.++ ..+.|+.+|+.||+++.+...
T Consensus 150 ~p~~~~l~L~~~gv~~~~~G~I~vd~~~~T~~~gvyA~GDv~~~~~-----------l~~~A~~~G~~aa~~~~~~~~ 216 (221)
T d3grsa1 150 VPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKAL-----------LTPVAIAAGRKLAHRLFEYKE 216 (221)
T ss_dssp EESCTTTTGGGTTCCBCTTSCBCCCTTCBCSSTTEEECGGGGTSSC-----------CHHHHHHHHHHHHHHHHSCCT
T ss_pred ccCCCCcCchhcCcEECCCccEEeCCCccccCCcEEEEEEccCCcC-----------cHHHHHHHHHHHHHHHcCCCC
Confidence 455553 57789999999999999999999999999999987553 355799999999999998654
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.61 E-value=2e-15 Score=162.89 Aligned_cols=163 Identities=25% Similarity=0.364 Sum_probs=123.2
Q ss_pred CeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcC--------------------------Cc--------cccc-----
Q psy2951 1206 SNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP--------------------------FQ--------ESLG----- 1246 (1466)
Q Consensus 1206 ~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~--------------------------~~--------~~~~----- 1246 (1466)
..|+|||+|+.|+++|..+++.|.+|+++++...- .. ..+.
T Consensus 4 ~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (223)
T d1ebda1 4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFAKVQ 83 (223)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEecCCCCcceeccccccccccccccchhhhhhhhhhhcccchhheeeHHHHh
Confidence 46999999999999999999999999999876411 00 0000
Q ss_pred -------HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEee--------ccccCccc--
Q psy2951 1247 -------KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI--------GTVLNTNY-- 1309 (1466)
Q Consensus 1247 -------~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~--------G~~p~~~~-- 1309 (1466)
..+...+...++..||+++.+.. .+. ...........++.++.+|.+|+++ |..|+++.
T Consensus 84 ~~~~~~v~~l~~~~~~~~~~~~V~~i~G~a--~f~--~~~~~~v~~~~~~~~~~~~~iiIa~g~~p~~~~G~~p~~~~l~ 159 (223)
T d1ebda1 84 EWKASVVKKLTGGVEGLLKGNKVEIVKGEA--YFV--DANTVRVVNGDSAQTYTFKNAIIATGSRPIELVGRRPNTDELG 159 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEEESEE--EEE--ETTEEEEEETTEEEEEECSEEEECCCEEECCBSCEEESCSSSS
T ss_pred hHHHHHHHHHHhhHHHhhhccceeeeccEE--EEc--cCcccceeccccceEEecccEEEEcCCCccccccceecCCCCC
Confidence 12334455667888999987642 233 2222222333445678999999984 88899884
Q ss_pred cccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCCCCCCCC
Q psy2951 1310 LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSLST 1383 (1466)
Q Consensus 1310 ~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~~~~~~ 1383 (1466)
+++.|++++++|+|.||+++|||.|+|||+|||+..|... +.|..||+.||.+|+|++.+++.
T Consensus 160 l~~~gv~~~~~G~I~vd~~~~T~~~gvyA~GDv~~~~~~~-----------~~A~~~g~~aa~~i~g~~~~~dy 222 (223)
T d1ebda1 160 LEQIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIVPGPALA-----------HKASYEGKVAAEAIAGHPSAVDY 222 (223)
T ss_dssp TTTTTCCBCTTSCBCCCTTCBCSSTTEEECGGGSSSCCCH-----------HHHHHHHHHHHHHHTSCCCCCCC
T ss_pred hHhcCceECCCCCEeECCCCCCCCCCEEEEeccCCCcccH-----------HHHHHHHHHHHHHHcCCCCCCCC
Confidence 6788999999999999999999999999999998877543 67999999999999998765543
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=1.2e-15 Score=148.09 Aligned_cols=117 Identities=17% Similarity=0.230 Sum_probs=107.6
Q ss_pred cEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHHHh----cCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhC
Q psy2951 1185 KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCA----SKVKSVTVVGRGAVPFQESLGKEVGERITKLFESK 1260 (1466)
Q Consensus 1185 ~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~----~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~ 1260 (1466)
+++++|+++|+.++.+.++..++++|||+|++|+|+|..|. +.|.+|+++++.+++|.+.+++++++.+.+.++++
T Consensus 17 ~~~~~r~~~d~~~l~~~~~~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~~~~~~~~~~~~~l~~~ 96 (137)
T d1m6ia2 17 RTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRRE 96 (137)
T ss_dssp TEEECCSHHHHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTT
T ss_pred cEEEEcCHHHHHHHHHHhhcCCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcccCCHHHHHHHHHHHHhC
Confidence 68999999999999999888999999999999999999885 45899999999999999889999999999999999
Q ss_pred CcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeecc
Q psy2951 1261 GVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGT 1303 (1466)
Q Consensus 1261 gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~ 1303 (1466)
||++++++.|++++ .++ ....+.++||++++||+||+|+|+
T Consensus 97 GV~~~~~~~V~~i~-~~~-~~~~v~l~~G~~i~aD~Vi~A~Gv 137 (137)
T d1m6ia2 97 GVKVMPNAIVQSVG-VSS-GKLLIKLKDGRKVETDHIVAAVGL 137 (137)
T ss_dssp TCEEECSCCEEEEE-EET-TEEEEEETTSCEEEESEEEECCCE
T ss_pred CcEEEeCCEEEEEE-ecC-CEEEEEECCCCEEECCEEEEeecC
Confidence 99999999999998 344 445699999999999999999994
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.60 E-value=2.2e-16 Score=171.79 Aligned_cols=58 Identities=29% Similarity=0.373 Sum_probs=47.4
Q ss_pred ccCCceecC-CccEEECCCCCcCCCCEEEecccccccCccCCCCcceeccHHHHHHHHHHHHHHhcCCC
Q psy2951 288 DGKGVELNG-QKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK 355 (1466)
Q Consensus 288 ~~~gl~~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~ 355 (1466)
+..+++++. .|+|.||++||||+|+|||+|||+..+ +.++..|+.+|+.||++|++..
T Consensus 172 ~~~gv~l~~~~g~I~vd~~~~TsvpgIyA~GDv~~g~----------~~l~~~A~~eG~~aa~~~~g~~ 230 (235)
T d1h6va1 172 ETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEGK----------LELTPVAIQAGRLLAQRLYGGS 230 (235)
T ss_dssp TTTTCCCCSSSCCBCCCTTSBCSSTTEEECGGGBTTS----------CCCHHHHHHHHHHHHHHHHHCC
T ss_pred ccceeeeccccCccccCCccccCCCCEEEEEeccCCC----------cccHHHHHHHHHHHHHHHcCCC
Confidence 445666665 489999999999999999999998644 2345679999999999998754
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.60 E-value=3.3e-15 Score=140.16 Aligned_cols=115 Identities=18% Similarity=0.288 Sum_probs=99.8
Q ss_pred CCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHH
Q psy2951 708 QADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFE 787 (1466)
Q Consensus 708 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~ 787 (1466)
+| |.+.+ .+.+++..+.+ .+++++|||+|++|+|+|..|+++|.+||++++.++++ +.+++++.+.+.+.|+
T Consensus 2 iP-G~e~~---~t~~~~~~l~~---~p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l-~~~d~~~~~~~~~~l~ 73 (116)
T d1gesa2 2 IP-GVEYG---IDSDGFFALPA---LPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPL-PSFDPMISETLVEVMN 73 (116)
T ss_dssp ST-TGGGS---BCHHHHHHCSS---CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-TTSCHHHHHHHHHHHH
T ss_pred cC-Ccccc---CCHHHHhChhh---CCCEEEEECCChhhHHHHHHhhccccEEEEEeecchhh-hhcchhhHHHHHHHHH
Confidence 56 76633 36667666543 48999999999999999999999999999999999887 6789999999999999
Q ss_pred hcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccc
Q psy2951 788 SKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 831 (1466)
Q Consensus 788 ~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G 831 (1466)
++||+++++++++++...+++.+ .+.+++|+++++|.||+|+|
T Consensus 74 ~~GV~~~~~~~v~~i~~~~~~~~-~v~~~~g~~~~~D~vi~a~G 116 (116)
T d1gesa2 74 AEGPQLHTNAIPKAVVKNTDGSL-TLELEDGRSETVDCLIWAIG 116 (116)
T ss_dssp HHSCEEECSCCEEEEEECTTSCE-EEEETTSCEEEESEEEECSC
T ss_pred HCCCEEEeCCEEEEEEEcCCcEE-EEEECCCCEEEcCEEEEecC
Confidence 99999999999999986555544 68899999999999999998
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.60 E-value=2.4e-15 Score=142.64 Aligned_cols=117 Identities=29% Similarity=0.417 Sum_probs=103.4
Q ss_pred CCC--cEEEecCHHHHHhhcccCC--CCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHH
Q psy2951 711 GVN--KVFYLRTVEDANNIAPHIT--PESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLF 786 (1466)
Q Consensus 711 g~~--~~~~~~~~~~~~~~~~~~~--~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l 786 (1466)
|.+ +++++++++++.++.+.+. ++++|+|||+|++|+|+|..|+++|++||++++.++++.+.+++++.+.+.+.+
T Consensus 3 G~d~~~v~~~~~~~da~~i~~~~~~~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~~d~~~~~~~~~~l 82 (123)
T d1nhpa2 3 GKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEM 82 (123)
T ss_dssp TTTSBSEECCCHHHHHHHHHHHHTCTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHH
T ss_pred CCCCCCeEEeCCHHHHHHHHHHhhccCCCEEEEECChHHHHHHHHHhhccceEEEEEEecCcccccccchhhHHHHHHHh
Confidence 655 8999999999998877664 478999999999999999999999999999999999987789999999999999
Q ss_pred HhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEcc
Q psy2951 787 ESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 830 (1466)
Q Consensus 787 ~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~ 830 (1466)
+++||++++++.+++++. ++++..+ +.+|++++||+||+|+
T Consensus 83 ~~~gv~~~~~~~v~~i~~--~~~~~~v-~~dg~~i~~D~vi~aI 123 (123)
T d1nhpa2 83 EANNITIATGETVERYEG--DGRVQKV-VTDKNAYDADLVVVAV 123 (123)
T ss_dssp HTTTEEEEESCCEEEEEC--SSBCCEE-EESSCEEECSEEEECS
T ss_pred hcCCeEEEeCceEEEEEc--CCCEEEE-EeCCCEEECCEEEEEC
Confidence 999999999999999983 3444334 5688899999999984
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.59 E-value=1.4e-15 Score=165.36 Aligned_cols=58 Identities=31% Similarity=0.386 Sum_probs=47.0
Q ss_pred ccCCceeeC-CCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCC
Q psy2951 840 DGKGVELNG-QKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK 907 (1466)
Q Consensus 840 ~~~gl~~~~-~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~ 907 (1466)
+..|++++. .|+|.||++||||.|+|||+|||+..+.. .++.|+.||++||++|++..
T Consensus 172 ~~~gv~l~~~~g~I~vd~~~~TsvpgIyA~GDv~~g~~~----------l~~~A~~eG~~aa~~~~g~~ 230 (235)
T d1h6va1 172 ETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEGKLE----------LTPVAIQAGRLLAQRLYGGS 230 (235)
T ss_dssp TTTTCCCCSSSCCBCCCTTSBCSSTTEEECGGGBTTSCC----------CHHHHHHHHHHHHHHHHHCC
T ss_pred ccceeeeccccCccccCCccccCCCCEEEEEeccCCCcc----------cHHHHHHHHHHHHHHHcCCC
Confidence 334566665 58999999999999999999999865432 34689999999999999754
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.59 E-value=5.8e-15 Score=138.10 Aligned_cols=116 Identities=16% Similarity=0.251 Sum_probs=99.2
Q ss_pred cCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHH
Q psy2951 705 TISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITK 784 (1466)
Q Consensus 705 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~ 784 (1466)
+|++| |.+.++ +.+++..+ ..+++|+|||||++|+|+|..|+++|.+||+++|.++++ +.+++++++.+.+
T Consensus 1 ~P~Ip-G~e~~~---ts~~~~~l----~~p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il-~~~d~~~~~~~~~ 71 (117)
T d1onfa2 1 FPPVK-GIENTI---SSDEFFNI----KESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRIL-RKFDESVINVLEN 71 (117)
T ss_dssp CCSCT-TGGGCE---EHHHHTTC----CCCSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSC-TTSCHHHHHHHHH
T ss_pred CcccC-CHhHcC---chhHHhcc----CCCCEEEEECCchHHHHHHHHHHhccccceeeehhcccc-ccccHHHHHHHHH
Confidence 47888 887654 44554433 348999999999999999999999999999999999887 6799999999999
Q ss_pred HHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEe-cCEEEEcc
Q psy2951 785 LFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIP-ADLVIVGI 830 (1466)
Q Consensus 785 ~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~-~D~vi~a~ 830 (1466)
.|+++||++++++++++++..+++. ..+.+++|+.++ +|.||+|+
T Consensus 72 ~l~~~gV~i~~~~~v~~i~~~~~~~-~~v~~~~G~~~~~~D~Vi~AI 117 (117)
T d1onfa2 72 DMKKNNINIVTFADVVEIKKVSDKN-LSIHLSDGRIYEHFDHVIYCV 117 (117)
T ss_dssp HHHHTTCEEECSCCEEEEEESSTTC-EEEEETTSCEEEEESEEEECC
T ss_pred HHHhCCCEEEECCEEEEEEEcCCCe-EEEEECCCCEEEeCCEEEEeC
Confidence 9999999999999999998655554 478899998874 79999985
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=99.59 E-value=2.6e-15 Score=165.48 Aligned_cols=159 Identities=25% Similarity=0.327 Sum_probs=112.9
Q ss_pred CCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCcc-------------------------------------ccCH
Q psy2951 734 ESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQE-------------------------------------SLGK 776 (1466)
Q Consensus 734 ~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~-------------------------------------~~~~ 776 (1466)
.-.++|||+|+.|+++|..++++|.+|+++++.+.+... ....
T Consensus 42 ~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c~n~GcvP~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (261)
T d1mo9a1 42 EYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGI 121 (261)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTCCCCH
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccccccccccccchHHHHhhHHhHHHHHHhhhhccccccccccccH
Confidence 346999999999999999999999999999987653210 0000
Q ss_pred -HHHHH------------HHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCcccc----
Q psy2951 777 -EVGER------------ITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYL---- 839 (1466)
Q Consensus 777 -~~~~~------------~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~---- 839 (1466)
...+. ..+.+...++..+.+....-+. .. .+. .++++++||.|++|+|.+|++..+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d---~~---~v~-~~g~~i~ad~viiAtG~~P~~~~i~~~~ 194 (261)
T d1mo9a1 122 KEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVID---NH---TVE-AAGKVFKAKNLILAVGAGPGTLDVPEQP 194 (261)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEE---TT---EEE-ETTEEEEBSCEEECCCEECCCCCSTCEE
T ss_pred HHHHHHHHHHHHhhhhhHHHHhhhcccceeEeeeEEEEee---ec---ccc-cccceEeeeeeeeccCCCCCcCcccccc
Confidence 00000 0112223333333332222221 11 122 367799999999999999987643
Q ss_pred ------ccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCCcC
Q psy2951 840 ------DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSL 910 (1466)
Q Consensus 840 ------~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~~~ 910 (1466)
+.+|++++++|+|.||++|||+.|+|||+|||+..|.. ++.|..||++||.||+|++..|
T Consensus 195 ~~~~l~~~~Gl~~~~~G~I~Vn~~~~Ts~~~IyA~GDv~~~~~l-----------~~~A~~~G~~aa~~i~G~k~~y 260 (261)
T d1mo9a1 195 RSAELAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGPME-----------MFKARKSGCYAARNVMGEKISY 260 (261)
T ss_dssp CCHHHHHHHTCCBCTTSCBCCCTTSBCSSTTEEECGGGGCSSCS-----------HHHHHHHHHHHHHHHTTCCCCC
T ss_pred cccccccceeeeeccCCEEEeCCCcccCCCCEEEEEEeCCCccc-----------HHHHHHHHHHHHHHHCCCCCCC
Confidence 34689999999999999999999999999999877654 3789999999999999986544
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=99.58 E-value=4.2e-15 Score=163.80 Aligned_cols=159 Identities=26% Similarity=0.335 Sum_probs=115.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcc-------------------------------------ccc-
Q psy2951 1205 ESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQE-------------------------------------SLG- 1246 (1466)
Q Consensus 1205 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~-------------------------------------~~~- 1246 (1466)
.-.++|||+|..|+++|..++++|.+|+++++.+..... .+.
T Consensus 42 ~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c~n~GcvP~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (261)
T d1mo9a1 42 EYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGI 121 (261)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTCCCCH
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccccccccccccchHHHHhhHHhHHHHHHhhhhccccccccccccH
Confidence 346999999999999999999999999999987643110 000
Q ss_pred HHHHH------------HHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccCcccc----
Q psy2951 1247 KEVGE------------RITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYL---- 1310 (1466)
Q Consensus 1247 ~~~~~------------~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~~~~~---- 1310 (1466)
....+ ...+.....++.........-+. .. . |. .+|++++||.|++|+|..|+++.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d--~~-~---v~-~~g~~i~ad~viiAtG~~P~~~~i~~~~ 194 (261)
T d1mo9a1 122 KEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVID--NH-T---VE-AAGKVFKAKNLILAVGAGPGTLDVPEQP 194 (261)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEE--TT-E---EE-ETTEEEEBSCEEECCCEECCCCCSTCEE
T ss_pred HHHHHHHHHHHHhhhhhHHHHhhhcccceeEeeeEEEEee--ec-c---cc-cccceEeeeeeeeccCCCCCcCcccccc
Confidence 00000 01122334444444333333222 11 1 22 367899999999999999997643
Q ss_pred ------ccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCCCCCC
Q psy2951 1311 ------DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSL 1381 (1466)
Q Consensus 1311 ------~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~~~~ 1381 (1466)
+..||+++++|+|.||++|||+.|+|||+|||+..|... +.|..||++||.||+|+...|
T Consensus 195 ~~~~l~~~~Gl~~~~~G~I~Vn~~~~Ts~~~IyA~GDv~~~~~l~-----------~~A~~~G~~aa~~i~G~k~~y 260 (261)
T d1mo9a1 195 RSAELAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGPMEM-----------FKARKSGCYAARNVMGEKISY 260 (261)
T ss_dssp CCHHHHHHHTCCBCTTSCBCCCTTSBCSSTTEEECGGGGCSSCSH-----------HHHHHHHHHHHHHHTTCCCCC
T ss_pred cccccccceeeeeccCCEEEeCCCcccCCCCEEEEEEeCCCcccH-----------HHHHHHHHHHHHHHCCCCCCC
Confidence 346899999999999999999999999999999887654 789999999999999987665
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.56 E-value=8.4e-19 Score=190.10 Aligned_cols=205 Identities=15% Similarity=0.116 Sum_probs=122.4
Q ss_pred CCCCCCCeEEEEEEcCeEEEEEcccchhcccc--ccccccccCCCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcC
Q psy2951 551 PGMDSLPCYKVTIQNDDSVVVQARKDELKNKK--RKLPMAKLSSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITD 628 (1466)
Q Consensus 551 p~~~~l~~~~v~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~ 628 (1466)
||+.|+.|+.-....+..+.|.+|++. +++. .+.+...++....++|+|||||||||+||..|+++|++ ++++|+
T Consensus 4 ~c~~c~~c~~~~~~~~~~~~c~~n~~~-~~e~~~~~~p~~~~~~~~~k~VvIIGaGpAGl~aA~~l~~~G~~--v~l~E~ 80 (233)
T d1djqa3 4 VCIGCNVCISRWEIGGPPMICTQNATA-GEEYRRGWHPEKFRQTKNKDSVLIVGAGPSGSEAARVLMESGYT--VHLTDT 80 (233)
T ss_dssp CCCCCCHHHHHHHHSSSCCCCSSCTTT-TTHHHHCCCSSCCCCCSSCCEEEEECCSHHHHHHHHHHHHTTCE--EEEECS
T ss_pred cchhhHHHHcccccCCceeeeecCccc-ChHHhcCCCCCccCcccCCceEEEEcccHHHHHHHHHHHHhccc--eeeEee
Confidence 677776665433334555667777763 3331 33333345566789999999999999999999999988 888888
Q ss_pred CCCCCCCCCccchhcc-cCcccccccCHhHhh---hCCcEEEEceEEEEeccccccEEEccCCCEEecCEEEEcCCCCCC
Q psy2951 629 ENFLPYDRVKLSKQLD-IKADSILLRTEEFYK---DNDIHVIKGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPR 704 (1466)
Q Consensus 629 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~gv~~~~~~~v~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~ 704 (1466)
+..+++.......... ........+....+. ..++.... +...+.+...+..++.||+||||||+.+.
T Consensus 81 ~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~d~vviAtG~~~~ 152 (233)
T d1djqa3 81 AEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQL--------ALGQKPMTADDVLQYGADKVIIATGASEC 152 (233)
T ss_dssp SSSTTTTHHHHTTSTTCGGGGHHHHHHHHHHHHHHTTCTTCEE--------ECSCCCCCHHHHHTSCCSEEEECCCEECC
T ss_pred ccccCCccccccccceeecccccchhHHHHHHHHhhcceeeee--------ecccccccchhhhhhccceeeeccCCCcc
Confidence 7766543221111110 111111111122222 22222111 11112222233346789999999999887
Q ss_pred cCCCCCCCC--cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccC
Q psy2951 705 TISQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF 770 (1466)
Q Consensus 705 ~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~ 770 (1466)
.|.++ +.+ ..... .+..........+++++|+|+|++|+|+|..|++.|.+|++++|.+..+
T Consensus 153 ~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~~~~ 216 (233)
T d1djqa3 153 TLWNE-LKARESEWAE---NDIKGIYLIGDAEAPRLIADATFTGHRVAREIEEANPQIAIPYKRETIA 216 (233)
T ss_dssp HHHHH-HHHTTHHHHH---TTCCEEEECGGGTSCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCCCCC
T ss_pred ccccc-ccccccccch---hhhhhhhhccccCCceeEecCchHHHHHHHHHHhcCCceEEEEeccccc
Confidence 76544 322 11111 1111111112347899999999999999999999999999999987643
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.53 E-value=4.1e-14 Score=132.22 Aligned_cols=115 Identities=17% Similarity=0.272 Sum_probs=96.7
Q ss_pred CCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHH
Q psy2951 155 SQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLF 234 (1466)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l 234 (1466)
|.+||.+.++ +.+++..++ .+++++|||||++|+|+|..|+++|.+||+++|.+.++ +.+++++.+.+.+.|
T Consensus 2 P~IpG~e~~~---ts~~~~~l~----~p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il-~~~d~~~~~~~~~~l 73 (117)
T d1onfa2 2 PPVKGIENTI---SSDEFFNIK----ESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRIL-RKFDESVINVLENDM 73 (117)
T ss_dssp CSCTTGGGCE---EHHHHTTCC----CCSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSC-TTSCHHHHHHHHHHH
T ss_pred cccCCHhHcC---chhHHhccC----CCCEEEEECCchHHHHHHHHHHhccccceeeehhcccc-ccccHHHHHHHHHHH
Confidence 4566766654 445555443 35899999999999999999999999999999998887 678999999999999
Q ss_pred HhCCcEEEcCceEEEEEecCCCCeEEEEcCCCcEEe-ccEEEEee
Q psy2951 235 ESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIP-ADLVIVGI 278 (1466)
Q Consensus 235 ~~~GV~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~-~D~Vi~a~ 278 (1466)
+++||++++++.+++++..+++. ..+++++|+.++ +|.||||+
T Consensus 74 ~~~gV~i~~~~~v~~i~~~~~~~-~~v~~~~G~~~~~~D~Vi~AI 117 (117)
T d1onfa2 74 KKNNINIVTFADVVEIKKVSDKN-LSIHLSDGRIYEHFDHVIYCV 117 (117)
T ss_dssp HHTTCEEECSCCEEEEEESSTTC-EEEEETTSCEEEEESEEEECC
T ss_pred HhCCCEEEECCEEEEEEEcCCCe-EEEEECCCCEEEeCCEEEEeC
Confidence 99999999999999998766554 457888998874 79999985
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=99.53 E-value=3e-14 Score=134.60 Aligned_cols=122 Identities=14% Similarity=0.138 Sum_probs=99.6
Q ss_pred CCcCCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHH
Q psy2951 703 PRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERI 782 (1466)
Q Consensus 703 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~ 782 (1466)
|+.|.+| +.+.++ +.+++..+. ..+++++|||+|++|+|+|..++++|.+||++++.++++ +.+++++.+.+
T Consensus 2 ~~lP~ip-~~~~i~---ts~~~l~l~---~~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il-~~~d~~~~~~l 73 (125)
T d1ojta2 2 TKLPFIP-EDPRII---DSSGALALK---EVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLM-QGADRDLVKVW 73 (125)
T ss_dssp CCCSSCC-CCTTEE---CHHHHTTCC---CCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSS-TTSCHHHHHHH
T ss_pred CCCCCCC-CCCcEE---cHHHhhCcc---ccCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecccc-ccchhhHHHHH
Confidence 4566666 444443 556655443 458999999999999999999999999999999999888 57899999999
Q ss_pred HHHHHhcCcEEEccceEEEEEecCCCceEEEECCCC--cEEecCEEEEcccc
Q psy2951 783 TKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG--TTIPADLVIVGIGT 832 (1466)
Q Consensus 783 ~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~ 832 (1466)
.+.|+++||++++++.+++++..+++....+...+| +++++|.|++|+|+
T Consensus 74 ~~~l~~~gv~~~~~~~v~~v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~GR 125 (125)
T d1ojta2 74 QKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGR 125 (125)
T ss_dssp HHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCE
T ss_pred HHHHHHcCcccccCcEEEEEEEcCCcEEEEEEeCCCCeEEEEcCEEEEecCC
Confidence 999999999999999999998655544334444544 37999999999995
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=2e-14 Score=139.37 Aligned_cols=117 Identities=17% Similarity=0.235 Sum_probs=105.4
Q ss_pred cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHh----ccCCeEEEEeecCccCccccCHHHHHHHHHHHHhc
Q psy2951 714 KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCA----SKVKSVTVVGRGAVPFQESLGKEVGERITKLFESK 789 (1466)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~----~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~ 789 (1466)
.++.+++++++.++.+....+++++|||||++|+|+|..|+ +.|.+|+++++.+.++...+++++++.+.+.++++
T Consensus 17 ~~~~~r~~~d~~~l~~~~~~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~~~~~~~~~~~~~l~~~ 96 (137)
T d1m6ia2 17 RTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRRE 96 (137)
T ss_dssp TEEECCSHHHHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTT
T ss_pred cEEEEcCHHHHHHHHHHhhcCCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcccCCHHHHHHHHHHHHhC
Confidence 68889999999999888778999999999999999999885 45899999999999987789999999999999999
Q ss_pred CcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEcccc
Q psy2951 790 GVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGT 832 (1466)
Q Consensus 790 gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 832 (1466)
||++++++.+++++.+ ++ ...+.+++|+++++|+||+|+|.
T Consensus 97 GV~~~~~~~V~~i~~~-~~-~~~v~l~~G~~i~aD~Vi~A~Gv 137 (137)
T d1m6ia2 97 GVKVMPNAIVQSVGVS-SG-KLLIKLKDGRKVETDHIVAAVGL 137 (137)
T ss_dssp TCEEECSCCEEEEEEE-TT-EEEEEETTSCEEEESEEEECCCE
T ss_pred CcEEEeCCEEEEEEec-CC-EEEEEECCCCEEECCEEEEeecC
Confidence 9999999999999843 33 44689999999999999999984
|
| >d1vm9a_ b.33.1.1 (A:) Toluene-4-monooxygenase system protein C, TmoC {Pseudomonas mendocina [TaxId: 300]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Rieske iron-sulfur protein (ISP) domain: Toluene-4-monooxygenase system protein C, TmoC species: Pseudomonas mendocina [TaxId: 300]
Probab=99.52 E-value=1.5e-14 Score=133.54 Aligned_cols=77 Identities=29% Similarity=0.378 Sum_probs=66.2
Q ss_pred CCCCEEEEEeeCCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCeEEE
Q psy2951 493 SSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVV 570 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~~ 570 (1466)
++..+++++..+|+++|+++.|||++++|++|.++++.|+||||+|+|++++|++.. |...+|+.|+++++++.+++
T Consensus 23 ~g~~v~v~r~~~g~~~A~~~~CpH~g~~l~~g~~~~~~i~Cp~Hg~~F~l~~G~~~~-p~~~~L~~~~v~v~~g~v~V 99 (109)
T d1vm9a_ 23 DGTEVLIVNSEEHGVKAYQAMCPHQEILLSEGSYEGGVITCRAHLWTFNDGTGHGIN-PDDAALAEYPVEVKGDDIYV 99 (109)
T ss_dssp TCCEEEEEEETTTEEEEEESBCSSSSCBGGGSEEETTEEECTTTCCEEETTTCBBSS-SSSCBCCEECEEEETTEEEE
T ss_pred CCeEEEEEEeCCCeEEEEEeeCCCCCccceeEeccCCEEEcccCCceEECCCccCCC-CCCCCccEEeEEEECCEEEE
Confidence 344555555568899999999999999999999999999999999999999999976 44568999999998877765
|
| >d1fqta_ b.33.1.1 (A:) Rieske-type ferredoxin associated with biphenyl dioxygenase {Burkholderia cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Rieske iron-sulfur protein (ISP) domain: Rieske-type ferredoxin associated with biphenyl dioxygenase species: Burkholderia cepacia [TaxId: 292]
Probab=99.52 E-value=1.3e-14 Score=133.62 Aligned_cols=77 Identities=22% Similarity=0.451 Sum_probs=68.5
Q ss_pred CCCEEEEEeeCCeEEEEeCCCCCCCcccCCce-ecCCEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCeEEE
Q psy2951 494 STPKTLAQSTTSNIYAVGTKCSHYGAPLVKGS-LGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVV 570 (1466)
Q Consensus 494 ~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~-~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~~ 570 (1466)
+++.+++++.+|++||+++.|||++++|..|. ++++.|+||||+|+|+++||++...|+..+|+.|+++++++.+|+
T Consensus 23 ~~~~i~v~r~~~~~~A~~~~CpH~g~~l~~g~~~~~~~i~Cp~H~~~F~l~tG~~~~~p~~~~l~~~~v~~~~g~i~v 100 (109)
T d1fqta_ 23 GGTSVAIFNVDGELFATQDRCTHGDWSLSDGGYLEGDVVECSLHMGKFCVRTGKVKSPPPCEALKIFPIRIEDNDVLV 100 (109)
T ss_dssp TTEEEEEEEETTEEEEEESBCTTSSCBSSTTCCEETTEEECTTTCCEEETTTCCEEESSCCSCCCBCCEEEETTEEEE
T ss_pred CCEEEEEEEECCEEEEEEeeccccCcccccceeecCCEEEccccCCEEECCCccCccCCCCCCCCEEeEEEECCEEEE
Confidence 35667777788999999999999999998764 567899999999999999999999999999999999998777664
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.51 E-value=6.2e-14 Score=151.18 Aligned_cols=161 Identities=23% Similarity=0.281 Sum_probs=115.2
Q ss_pred cEEEECCChHHHHHHHHHhccC---CeEEEEeecCcc-----------------------------Cc-------cccC-
Q psy2951 736 NVVVIGSSFIGMEAAAFCASKV---KSVTVVGRGAVP-----------------------------FQ-------ESLG- 775 (1466)
Q Consensus 736 ~vvVvG~G~~g~e~A~~l~~~g---~~V~lv~~~~~~-----------------------------~~-------~~~~- 775 (1466)
+|+|||+|+.|+.+|..+++++ .+|+++++...- +. ..++
T Consensus 3 ~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~~GG~cln~GciPsK~ll~~a~~~~~~~~~~~~G~~i~~~~~~~d~ 82 (233)
T d1xdia1 3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGIGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAKISL 82 (233)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------CBCH
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCCCCceeecccccccEEEEeecchhhhhhhhhhcCCcccccCceeee
Confidence 7999999999999998877664 679999865310 00 0011
Q ss_pred -----------HHHHHHHHHHHHhcCcEEEccceEEEEEe-cCCCceEEEECCCCc--EEecCEEEEccccccCcc----
Q psy2951 776 -----------KEVGERITKLFESKGVKFVMKANVSSFEK-NEKNDVTAANLDNGT--TIPADLVIVGIGTVLNTN---- 837 (1466)
Q Consensus 776 -----------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~-~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~~~---- 837 (1466)
......+...++..||+++.+.....-.. ........+...+|+ ++++|.+|+|+|.+|...
T Consensus 83 ~~~~~~~~~v~~~~~~~~~~~~~~~gV~vi~G~~~~~~~~~~~~~~~v~v~~~dg~~~~i~ad~viiAtG~~p~~~~~~~ 162 (233)
T d1xdia1 83 PQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSGS 162 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECCCGGCE
T ss_pred eeeccccceeeeeeecceehhhcccceeEEECcccccccccccccceEEEEecCCceeeeecceeeeecCcccccccccc
Confidence 01112345667888999987643221110 111123456666665 689999999999988632
Q ss_pred -------ccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCC
Q psy2951 838 -------YLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK 907 (1466)
Q Consensus 838 -------~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~ 907 (1466)
.++..+++++++|+|.||++|||+.|+|||+|||+..+.. .+.|..||++||.||+++.
T Consensus 163 ~~~~~~l~l~~~gv~~~~~G~I~vd~~~~T~~~gIyA~GDv~~~~~l-----------~~~A~~~g~~aa~~~~g~~ 228 (233)
T d1xdia1 163 VPNTSGLGLERVGIQLGRGNYLTVDRVSRTLATGIYAAGDCTGLLPL-----------ASVAAMQGRIAMYHALGEG 228 (233)
T ss_dssp EECCSSSCTTTTTCCCBTTTBCCCCSSSBCSSTTEEECSGGGTSCSC-----------HHHHHHHHHHHHHHHTTCC
T ss_pred cccccccccchhhhcccCCCcCCcCCCcccCCCCEEEEEEeCCCchh-----------HHHHHHHHHHHHHHHcCCC
Confidence 2466788999999999999999999999999999876543 4689999999999999864
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.51 E-value=3.3e-14 Score=133.24 Aligned_cols=115 Identities=18% Similarity=0.277 Sum_probs=98.2
Q ss_pred CCCCCCcEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHH
Q psy2951 1179 QADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFE 1258 (1466)
Q Consensus 1179 ~~~g~~~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~ 1258 (1466)
+| |.+. ..+.+++..+.+ ..++++|||+|++|+|+|..|+++|.+||++++.+++++ .+++++++.+.+.++
T Consensus 2 iP-G~e~---~~t~~~~~~l~~---~p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~-~~d~~~~~~~~~~l~ 73 (116)
T d1gesa2 2 IP-GVEY---GIDSDGFFALPA---LPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP-SFDPMISETLVEVMN 73 (116)
T ss_dssp ST-TGGG---SBCHHHHHHCSS---CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-TSCHHHHHHHHHHHH
T ss_pred cC-Cccc---cCCHHHHhChhh---CCCEEEEECCChhhHHHHHHhhccccEEEEEeecchhhh-hcchhhHHHHHHHHH
Confidence 56 6552 235677766543 368999999999999999999999999999999998885 688999999999999
Q ss_pred hCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeec
Q psy2951 1259 SKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 1302 (1466)
Q Consensus 1259 ~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G 1302 (1466)
++||++++++.++++...+++. ..+++++|+++++|.|++|+|
T Consensus 74 ~~GV~~~~~~~v~~i~~~~~~~-~~v~~~~g~~~~~D~vi~a~G 116 (116)
T d1gesa2 74 AEGPQLHTNAIPKAVVKNTDGS-LTLELEDGRSETVDCLIWAIG 116 (116)
T ss_dssp HHSCEEECSCCEEEEEECTTSC-EEEEETTSCEEEESEEEECSC
T ss_pred HCCCEEEeCCEEEEEEEcCCcE-EEEEECCCCEEEcCEEEEecC
Confidence 9999999999999998433443 458999999999999999998
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.49 E-value=7.8e-14 Score=131.36 Aligned_cols=108 Identities=19% Similarity=0.362 Sum_probs=92.7
Q ss_pred CHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhc---cCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEcc
Q psy2951 720 TVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCAS---KVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMK 796 (1466)
Q Consensus 720 ~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~---~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~ 796 (1466)
+.+++..+. ..+++++|||||++|+|+|..|.+ .|.+|+++++.++++ +.++++++..+.+.|+++||+++++
T Consensus 7 ts~~~~~l~---~~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il-~~~d~~~~~~~~~~l~~~GI~v~~~ 82 (117)
T d1feca2 7 TSNEAFYLD---EAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL-RGFDSELRKQLTEQLRANGINVRTH 82 (117)
T ss_dssp CHHHHTTCS---SCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS-TTSCHHHHHHHHHHHHHTTEEEEET
T ss_pred chHHhhCcc---ccCCeEEEECCChHHHHHHHHhHhhcccccccceeccccccc-ccccchhhHHHHHHHhhCcEEEEcC
Confidence 445554433 348999999999999999987654 488999999999888 6799999999999999999999999
Q ss_pred ceEEEEEecCCCceEEEECCCCcEEecCEEEEcccc
Q psy2951 797 ANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGT 832 (1466)
Q Consensus 797 ~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 832 (1466)
+++++|+..+++ ...+.+++|++++||.||+|+|+
T Consensus 83 ~~v~~i~~~~~g-~~~v~~~~g~~i~~D~Vi~a~GR 117 (117)
T d1feca2 83 ENPAKVTKNADG-TRHVVFESGAEADYDVVMLAIGR 117 (117)
T ss_dssp CCEEEEEECTTS-CEEEEETTSCEEEESEEEECSCE
T ss_pred CEEEEEEECCCC-EEEEEECCCCEEEcCEEEEecCC
Confidence 999999865554 45789999999999999999995
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=99.49 E-value=9.1e-14 Score=131.25 Aligned_cols=120 Identities=14% Similarity=0.153 Sum_probs=97.7
Q ss_pred CCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHH
Q psy2951 154 ISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKL 233 (1466)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~ 233 (1466)
+|.+|..+.++ +.+++..+. ..+++++|||||++|+|+|..++++|.+||++++.+.++ +.+++++.+.+.+.
T Consensus 4 lP~ip~~~~i~---ts~~~l~l~---~~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il-~~~d~~~~~~l~~~ 76 (125)
T d1ojta2 4 LPFIPEDPRII---DSSGALALK---EVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLM-QGADRDLVKVWQKQ 76 (125)
T ss_dssp CSSCCCCTTEE---CHHHHTTCC---CCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSS-TTSCHHHHHHHHHH
T ss_pred CCCCCCCCcEE---cHHHhhCcc---ccCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecccc-ccchhhHHHHHHHH
Confidence 45566555544 566666654 335899999999999999999999999999999998887 47899999999999
Q ss_pred HHhCCcEEEcCceEEEEEecCCCCeEEEEcCCC--cEEeccEEEEeecc
Q psy2951 234 FESKGVKFVMKANVSSFEKNEKNDVTAANLDNG--TTIPADLVIVGIGT 280 (1466)
Q Consensus 234 l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~Vi~a~G~ 280 (1466)
|+++||++++++.+++++.++++....+...++ +++++|.|++|+|+
T Consensus 77 l~~~gv~~~~~~~v~~v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~GR 125 (125)
T d1ojta2 77 NEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGR 125 (125)
T ss_dssp HGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCE
T ss_pred HHHcCcccccCcEEEEEEEcCCcEEEEEEeCCCCeEEEEcCEEEEecCC
Confidence 999999999999999998776443333344444 47999999999995
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.48 E-value=1.3e-13 Score=129.54 Aligned_cols=112 Identities=23% Similarity=0.427 Sum_probs=93.8
Q ss_pred CCCcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhcc---CCeEEEEeecCccCccccCHHHHHHHHHHHH
Q psy2951 711 GVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASK---VKSVTVVGRGAVPFQESLGKEVGERITKLFE 787 (1466)
Q Consensus 711 g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~---g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~ 787 (1466)
|.+.+ .+.+++..+. ..+++++|||||++|+|+|..|..+ +.+||++++.++++ +.+++++++.+.+.|+
T Consensus 3 G~~~~---~t~~~~~~l~---~~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL-~~~d~~~~~~l~~~l~ 75 (117)
T d1aoga2 3 GIEHC---ISSNEAFYLP---EPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL-RGFDHTLREELTKQLT 75 (117)
T ss_dssp TGGGC---BCHHHHTTCS---SCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS-TTSCHHHHHHHHHHHH
T ss_pred Cccce---EcHHHHhCch---hcCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh-cccchHHHHHHHHHHH
Confidence 65543 3566655433 3589999999999999999877655 46899999999888 6899999999999999
Q ss_pred hcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEcc
Q psy2951 788 SKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 830 (1466)
Q Consensus 788 ~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~ 830 (1466)
++||++++++++++++...++.+ .+.+++|++++||.||+|+
T Consensus 76 ~~GV~v~~~~~v~~ie~~~~~~~-~v~~~~G~~i~~D~Vi~AI 117 (117)
T d1aoga2 76 ANGIQILTKENPAKVELNADGSK-SVTFESGKKMDFDLVMMAI 117 (117)
T ss_dssp HTTCEEEESCCEEEEEECTTSCE-EEEETTSCEEEESEEEECS
T ss_pred hcCcEEEcCCEEEEEEEcCCCeE-EEEECCCcEEEeCEEEEeC
Confidence 99999999999999986555544 6899999999999999985
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.48 E-value=1.4e-13 Score=129.50 Aligned_cols=108 Identities=19% Similarity=0.361 Sum_probs=92.5
Q ss_pred CHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhh---CCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEEcC
Q psy2951 168 TVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCAS---KVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMK 244 (1466)
Q Consensus 168 ~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~---~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~ 244 (1466)
+.+++..++. .+++++|||||++|+|+|..+++ .|.+|+++++.+.++ +.+++++.+.+++.|+++||+++++
T Consensus 7 ts~~~~~l~~---~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il-~~~d~~~~~~~~~~l~~~GI~v~~~ 82 (117)
T d1feca2 7 TSNEAFYLDE---APKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL-RGFDSELRKQLTEQLRANGINVRTH 82 (117)
T ss_dssp CHHHHTTCSS---CCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS-TTSCHHHHHHHHHHHHHTTEEEEET
T ss_pred chHHhhCccc---cCCeEEEECCChHHHHHHHHhHhhcccccccceeccccccc-ccccchhhHHHHHHHhhCcEEEEcC
Confidence 4566655543 35799999999999999987655 488999999998887 5789999999999999999999999
Q ss_pred ceEEEEEecCCCCeEEEEcCCCcEEeccEEEEeecc
Q psy2951 245 ANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGT 280 (1466)
Q Consensus 245 ~~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~ 280 (1466)
+.+++|+.++++ ...+.+++|+++++|.||+|+|+
T Consensus 83 ~~v~~i~~~~~g-~~~v~~~~g~~i~~D~Vi~a~GR 117 (117)
T d1feca2 83 ENPAKVTKNADG-TRHVVFESGAEADYDVVMLAIGR 117 (117)
T ss_dssp CCEEEEEECTTS-CEEEEETTSCEEEESEEEECSCE
T ss_pred CEEEEEEECCCC-EEEEEECCCCEEEcCEEEEecCC
Confidence 999999876544 45688899999999999999995
|
| >d3c0da1 b.33.1.3 (A:4-111) NADH-nitrite reductase small subunit NirD {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: NirD-like domain: NADH-nitrite reductase small subunit NirD species: Vibrio parahaemolyticus [TaxId: 670]
Probab=99.47 E-value=1.4e-14 Score=133.20 Aligned_cols=78 Identities=18% Similarity=0.211 Sum_probs=62.4
Q ss_pred CCCCEEEEEeeCCeEEEEeCCCCCCCcccCCc-eec----CCEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCe
Q psy2951 493 SSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKG-SLG----DGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDD 567 (1466)
Q Consensus 493 ~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g-~~~----~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~ 567 (1466)
++..+++++..+|++||++|.|||++++|.++ .+. +..|.||||+|+|+++||++..+|+. +|+.|+++++++.
T Consensus 23 ~g~~i~v~r~~~g~~~A~~~~CpH~g~~L~~~g~~~~~~~~~~i~Cp~Hg~~Fdl~tG~~~~~p~~-~l~~y~v~v~~g~ 101 (108)
T d3c0da1 23 EGERVALFYIPDSGVYAVQDWDPIGKAYVMSRGIVGDINGEMCVASPLYKQHFSLKSGQCLEDEAH-CLKTWRVTVDDNQ 101 (108)
T ss_dssp TTEEEEEEEETTTEEEEEESEETTTTEECGGGSEEEESSSSEEEECTTTCCEEETTTCBBSSCTTC-BCCEECEEESSSE
T ss_pred CCEEEEEEEeCCCCEEEEEccCCCCCcccccccEEEecCCceEEeccccccEEeccCCccccCCCC-cccEEeEEEECCE
Confidence 33444455556899999999999999997554 332 23699999999999999999988875 7999999998888
Q ss_pred EEEE
Q psy2951 568 SVVV 571 (1466)
Q Consensus 568 ~~~~ 571 (1466)
+|+.
T Consensus 102 V~V~ 105 (108)
T d3c0da1 102 VCYL 105 (108)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7764
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.47 E-value=1.6e-13 Score=147.89 Aligned_cols=162 Identities=24% Similarity=0.309 Sum_probs=116.2
Q ss_pred eEEEEcCCHHHHHHHHHHhcC---CCeEEEEcCCCcC-----------------------Cc--cccc------------
Q psy2951 1207 NVVVIGSSFIGMEAAAFCASK---VKSVTVVGRGAVP-----------------------FQ--ESLG------------ 1246 (1466)
Q Consensus 1207 ~vvVvG~g~~g~e~a~~l~~~---g~~v~vv~~~~~~-----------------------~~--~~~~------------ 1246 (1466)
+|+|||+|+.|+.+|..+++. +.+|+++++...- +. ..++
T Consensus 3 ~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~~GG~cln~GciPsK~ll~~a~~~~~~~~~~~~G~~i~~~~~~~d~ 82 (233)
T d1xdia1 3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGIGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAKISL 82 (233)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------CBCH
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCCCCceeecccccccEEEEeecchhhhhhhhhhcCCcccccCceeee
Confidence 799999999999998877655 4679999875310 00 0000
Q ss_pred -----------HHHHHHHHHHHHhCCcEEEcCceEEEEEe-cCCCcEEEEEcCCCC--eeecCEEEEeeccccCcc----
Q psy2951 1247 -----------KEVGERITKLFESKGVKFVMKANVSSFEK-NEKNDVTAANLDNGT--TIPADLVIVGIGTVLNTN---- 1308 (1466)
Q Consensus 1247 -----------~~~~~~l~~~~~~~gv~~~~~~~v~~i~~-~~~g~~~~v~l~~g~--~i~~D~vv~a~G~~p~~~---- 1308 (1466)
......+...++.+||+++.+.....-.. ........+...||+ ++++|.|++++|..|...
T Consensus 83 ~~~~~~~~~v~~~~~~~~~~~~~~~gV~vi~G~~~~~~~~~~~~~~~v~v~~~dg~~~~i~ad~viiAtG~~p~~~~~~~ 162 (233)
T d1xdia1 83 PQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSGS 162 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECCCGGCE
T ss_pred eeeccccceeeeeeecceehhhcccceeEEECcccccccccccccceEEEEecCCceeeeecceeeeecCcccccccccc
Confidence 11223356678889999987643211100 001133456667774 689999999999988642
Q ss_pred -------ccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCCCC
Q psy2951 1309 -------YLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 1379 (1466)
Q Consensus 1309 -------~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~~ 1379 (1466)
.|+..|++++++|+|.||++|||+.|+|||+|||+..+... +.|..||++||.||+|+..
T Consensus 163 ~~~~~~l~l~~~gv~~~~~G~I~vd~~~~T~~~gIyA~GDv~~~~~l~-----------~~A~~~g~~aa~~~~g~~~ 229 (233)
T d1xdia1 163 VPNTSGLGLERVGIQLGRGNYLTVDRVSRTLATGIYAAGDCTGLLPLA-----------SVAAMQGRIAMYHALGEGV 229 (233)
T ss_dssp EECCSSSCTTTTTCCCBTTTBCCCCSSSBCSSTTEEECSGGGTSCSCH-----------HHHHHHHHHHHHHHTTCCC
T ss_pred cccccccccchhhhcccCCCcCCcCCCcccCCCCEEEEEEeCCCchhH-----------HHHHHHHHHHHHHHcCCCC
Confidence 24567888999999999999999999999999998776543 6899999999999998653
|
| >d2jo6a1 b.33.1.3 (A:1-108) NADH-nitrite reductase small subunit NirD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: NirD-like domain: NADH-nitrite reductase small subunit NirD species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=2.7e-14 Score=131.25 Aligned_cols=78 Identities=12% Similarity=0.244 Sum_probs=63.7
Q ss_pred CCCCCEEEEE-eeCCeEEEEeCCCCCCCcc-cCCceecC----CEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEc
Q psy2951 492 ASSTPKTLAQ-STTSNIYAVGTKCSHYGAP-LVKGSLGD----GRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQN 565 (1466)
Q Consensus 492 ~~~~~~~~~~-~~~g~~~a~~~~C~H~~~~-l~~g~~~~----~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~ 565 (1466)
.++..+++++ +.+|++||++|.|||++++ |+.|.+.+ ..|+||||+|+|+++||+|...|+. +|+.|++++++
T Consensus 23 ~~g~~i~l~r~~~~g~v~A~~~~CpH~g~~ll~~G~~~~~~~~~~i~Cp~Hg~~F~l~tG~~~~~p~~-~l~~y~v~v~~ 101 (108)
T d2jo6a1 23 LGDEQVAIFRPYHSDQVFAISNIDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLSDGLCMEDEQF-SVKHYEARVKD 101 (108)
T ss_dssp ETTEEEEEEECSSSSCCEEEESSCSSSCCSCSTTSEEEEETTEEEEEETTTTEEEETTTTEETTTTTT-CCCEEEEEEET
T ss_pred ECCEEEEEEEECcCCEEEEEECcCCCCCCccccceeEeccccCCEEECCCCCceEECCCccCCCCCCC-cccEEeEEEEC
Confidence 3444555554 3579999999999999999 67777642 3699999999999999999998875 79999999988
Q ss_pred CeEEE
Q psy2951 566 DDSVV 570 (1466)
Q Consensus 566 ~~~~~ 570 (1466)
+.+++
T Consensus 102 g~V~V 106 (108)
T d2jo6a1 102 GVVQL 106 (108)
T ss_dssp TEEEE
T ss_pred CEEEE
Confidence 87765
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.46 E-value=1.5e-13 Score=129.73 Aligned_cols=106 Identities=21% Similarity=0.344 Sum_probs=91.0
Q ss_pred CHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceE
Q psy2951 720 TVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANV 799 (1466)
Q Consensus 720 ~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v 799 (1466)
+.+++..+. ..+++++|||+|++|+|+|..|+++|.+||++++.++++ +.+++++.+.+++.|+++||++++++++
T Consensus 12 ts~~~~~l~---~~p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l-~~~d~ei~~~l~~~l~~~GV~i~~~~~v 87 (122)
T d1v59a2 12 SSTGALSLK---EIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIG-ASMDGEVAKATQKFLKKQGLDFKLSTKV 87 (122)
T ss_dssp CHHHHTTCS---SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-SSSCHHHHHHHHHHHHHTTCEEECSEEE
T ss_pred ehHHhhCcc---cCCCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccc-hhhhhhhHHHHHHHHHhccceEEeCCEE
Confidence 556665543 348999999999999999999999999999999999988 5799999999999999999999999999
Q ss_pred EEEEecCCCceEEEECCCC-----cEEecCEEEEc
Q psy2951 800 SSFEKNEKNDVTAANLDNG-----TTIPADLVIVG 829 (1466)
Q Consensus 800 ~~i~~~~~~~~~~v~~~~g-----~~i~~D~vi~a 829 (1466)
++++..+++....+.+.++ +++++|.|++|
T Consensus 88 ~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA 122 (122)
T d1v59a2 88 ISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA 122 (122)
T ss_dssp EEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred EEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence 9998766666656665443 37999999986
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.45 E-value=3.1e-13 Score=126.98 Aligned_cols=108 Identities=21% Similarity=0.270 Sum_probs=88.8
Q ss_pred CHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceE
Q psy2951 720 TVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANV 799 (1466)
Q Consensus 720 ~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v 799 (1466)
+.+++.++. ..+++++|||+|++|+|+|..|+++|++||++.+.++++ +.+++++...+++.|+++||++++++++
T Consensus 11 ~s~~~l~l~---~~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll-~~~d~ei~~~l~~~l~~~Gv~i~~~~~v 86 (119)
T d3lada2 11 DSTGALDFQ---NVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFL-PAVDEQVAKEAQKILTKQGLKILLGARV 86 (119)
T ss_dssp EHHHHTSCS---SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS-TTSCHHHHHHHHHHHHHTTEEEEETCEE
T ss_pred chhHhhCcc---cCCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccC-CcccchhHHHHHHHHHhcCceeecCcEE
Confidence 445554433 358999999999999999999999999999999999887 6899999999999999999999999999
Q ss_pred EEEEecCCCceEEEECCC-CcEEecCEEEEccc
Q psy2951 800 SSFEKNEKNDVTAANLDN-GTTIPADLVIVGIG 831 (1466)
Q Consensus 800 ~~i~~~~~~~~~~v~~~~-g~~i~~D~vi~a~G 831 (1466)
++++..+++........+ ++++.||.|++|+|
T Consensus 87 ~~i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG 119 (119)
T d3lada2 87 TGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG 119 (119)
T ss_dssp EEEEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred EEEEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence 999865443222222222 25799999999998
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=3e-13 Score=128.55 Aligned_cols=117 Identities=17% Similarity=0.213 Sum_probs=94.3
Q ss_pred CCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHH
Q psy2951 707 SQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLF 786 (1466)
Q Consensus 707 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l 786 (1466)
.+| |.+.+ .+.+++..+.+ .+|+++|||+|++|+|+|..|+++|.+||+++|.++++ +.+++++.+.+.+.|
T Consensus 2 ~IP-G~e~~---~ts~~~~~l~~---~pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l-~~~d~~~~~~~~~~l 73 (125)
T d3grsa2 2 QIP-GASLG---ITSDGFFQLEE---LPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEEL 73 (125)
T ss_dssp TST-TGGGS---BCHHHHTTCCS---CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC-TTSCHHHHHHHHHHH
T ss_pred CCC-Ccccc---CCHHHHhChhh---cCCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccc-cchhhHHHHHHHHHH
Confidence 356 76643 35566655443 47999999999999999999999999999999999887 679999999999999
Q ss_pred HhcCcEEEccceEEEEEecCCCc-eEEEECCCCc------EEecCEEEEccc
Q psy2951 787 ESKGVKFVMKANVSSFEKNEKND-VTAANLDNGT------TIPADLVIVGIG 831 (1466)
Q Consensus 787 ~~~gv~~~~~~~v~~i~~~~~~~-~~~v~~~~g~------~i~~D~vi~a~G 831 (1466)
+++||++++++++++++..+++. +..+...+|+ .+++|.|++|+|
T Consensus 74 ~~~Gv~i~~~~~v~~i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G 125 (125)
T d3grsa2 74 ENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG 125 (125)
T ss_dssp HHTTCEEETTEEEEEEEEETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred HHCCCEEEeCCEEEEEEEcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence 99999999999999998655542 2233344443 568999999987
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=99.45 E-value=2.2e-13 Score=129.46 Aligned_cols=113 Identities=22% Similarity=0.335 Sum_probs=94.0
Q ss_pred cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEE
Q psy2951 714 KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKF 793 (1466)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~ 793 (1466)
+++...++.+. +. ..++++++|||||++|+|+|..|+++|.+|+++++.+.++ +.+++++++.+.+.++++||++
T Consensus 6 gv~~~~~~~~~--l~--~~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l-~~~d~~~~~~~~~~l~~~gI~v 80 (121)
T d1mo9a2 6 GVFDHATLVEE--LD--YEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK-LIKDNETRAYVLDRMKEQGMEI 80 (121)
T ss_dssp TEEEHHHHHHH--CC--SCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT-TCCSHHHHHHHHHHHHHTTCEE
T ss_pred CEEeHHHHHHH--Hh--hCCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhh-cccccchhhhhhhhhhccccEE
Confidence 56655444332 11 2358999999999999999999999999999999999877 6899999999999999999999
Q ss_pred EccceEEEEEecCCCceEEE---ECCCCcEEecCEEEEccc
Q psy2951 794 VMKANVSSFEKNEKNDVTAA---NLDNGTTIPADLVIVGIG 831 (1466)
Q Consensus 794 ~~~~~v~~i~~~~~~~~~~v---~~~~g~~i~~D~vi~a~G 831 (1466)
++++++++++..+++.+..+ ...++++|+||.||+|+|
T Consensus 81 ~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G 121 (121)
T d1mo9a2 81 ISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG 121 (121)
T ss_dssp ESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred EcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence 99999999997666654333 355667899999999998
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.45 E-value=3.3e-13 Score=140.47 Aligned_cols=156 Identities=28% Similarity=0.346 Sum_probs=120.8
Q ss_pred CCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccC--------------------ccccCHHHHHHHHHHHHhcCcEE
Q psy2951 734 ESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF--------------------QESLGKEVGERITKLFESKGVKF 793 (1466)
Q Consensus 734 ~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~--------------------~~~~~~~~~~~~~~~l~~~gv~~ 793 (1466)
.++|+|||||++|+++|..+++.|.+|.++++..... ....++++...+.+.+++.|+++
T Consensus 5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~q~~~~g~~i 84 (192)
T d1vdca1 5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTI 84 (192)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEE
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccccccchhhhccccccccccchHHHHHHHHHHHhhccee
Confidence 5789999999999999999999999999998654210 01224667777777788899999
Q ss_pred EccceEEEEEecCCCceEEEECCCCcEEecCEEEEcccc-----ccCccccccCCceeeCCCcEEeCC-CCCCCCCCeEE
Q psy2951 794 VMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGT-----VLNTNYLDGKGVELNGQKAVVVNE-YLETNVPGVYA 867 (1466)
Q Consensus 794 ~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~-----~p~~~~~~~~gl~~~~~G~i~vd~-~~~t~~~~iya 867 (1466)
... .|.+++..++ ...+. .+..+..+|.+++++|. .|++.+++. +++++++|+|.+|+ +++|+.|+|||
T Consensus 85 ~~~-~V~~~~~~~~--~~~v~-~~~~~~~~~~~~~a~g~~~~g~~p~~~~~~~-~veld~~G~i~~~~~~~~Ts~~GV~a 159 (192)
T d1vdca1 85 FTE-TVTKVDFSSK--PFKLF-TDSKAILADAVILAIGAVAKGHEPATKFLDG-GVELDSDGYVVTKPGTTQTSVPGVFA 159 (192)
T ss_dssp ECC-CCCEEECSSS--SEEEE-CSSEEEEEEEEEECCCEEECCEEESCGGGTT-SSCBCTTSCBCCCTTSCBCSSTTEEE
T ss_pred eee-eEEecccccC--cEEec-ccceeeeeeeEEEEeeeeecccCchHHHhcC-ceeecCCCeEEeCCCceEecCCCEEE
Confidence 865 5777774332 23344 34457889999999985 577777765 68999999999995 78999999999
Q ss_pred eccccccCCcccCCceeeeccHHHHHHHHHHHHHHhc
Q psy2951 868 GGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMV 904 (1466)
Q Consensus 868 ~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~ 904 (1466)
+|||...+... ...|..+|..||..+.
T Consensus 160 ~GDv~~~~~r~----------~v~A~g~G~~aA~~~~ 186 (192)
T d1vdca1 160 AGDVQDKKYRQ----------AITAAGTGCMAALDAE 186 (192)
T ss_dssp CGGGGCSSCCC----------HHHHHHHHHHHHHHHH
T ss_pred eeecCCcccce----------EEEEEechHHHHHHHH
Confidence 99998876432 3579999999998763
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=99.45 E-value=2.6e-13 Score=146.19 Aligned_cols=163 Identities=23% Similarity=0.228 Sum_probs=109.3
Q ss_pred cEEEECCChHHHHHHHHHhccCCeEEEEeecCccCc-----------------------------------ccc------
Q psy2951 736 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQ-----------------------------------ESL------ 774 (1466)
Q Consensus 736 ~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~-----------------------------------~~~------ 774 (1466)
.|+|||+|+.|+.+|..+++.|.+|+|+++.+.+.. ..+
T Consensus 8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~GG~~~~~g~~~~~~~~~~a~~~~~~~~~~~~G~~~~~~~~~~~~~~ 87 (229)
T d1ojta1 8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPELDIDMLR 87 (229)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCCHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeccccchhhhhhhhhhhHHhhhhHhhcCCcccCCcccHHHHH
Confidence 589999999999999999999999999998654210 000
Q ss_pred ------CHHHHHHHHHHHHhcCcEEEccceEEEEEe-------cCCCceEEEECCCCcEEecCEEEEcccc-ccCcc--c
Q psy2951 775 ------GKEVGERITKLFESKGVKFVMKANVSSFEK-------NEKNDVTAANLDNGTTIPADLVIVGIGT-VLNTN--Y 838 (1466)
Q Consensus 775 ------~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~-------~~~~~~~~v~~~~g~~i~~D~vi~a~G~-~p~~~--~ 838 (1466)
...+...+......++++++.+.....-.. ..............+...+|.++++.|. .|++. +
T Consensus 88 ~~~~~~~~~l~~~~~~~~~~~~v~vi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 167 (229)
T d1ojta1 88 AYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRAPNGKLIS 167 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCEEEECGGGTT
T ss_pred HHHHHHHHHHhcchHhHhhcCceEEEEeeeeecCCcccccccccccccccccccccccceecceEEEEecccCCcccccc
Confidence 011112233445667787765443211100 0000000011111234556666666664 45433 5
Q ss_pred cccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCCc
Q psy2951 839 LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS 909 (1466)
Q Consensus 839 ~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~~ 909 (1466)
++..|++++++|+|.||+++|||.|+|||+|||+..+.. .+.|+.||++||.+|+|++..
T Consensus 168 ~e~~g~~~d~~G~I~vd~~~~TsvpgVyAaGDv~~~~~l-----------~~~A~~eG~~Aa~~i~G~~~~ 227 (229)
T d1ojta1 168 AEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPML-----------AHKAVHEGHVAAENCAGHKAY 227 (229)
T ss_dssp GGGTTCCCCTTSCCCCCTTSBCSSTTEEECGGGTCSSCC-----------HHHHHHHHHHHHHHHTTCCCC
T ss_pred hhhhCccCCCCCCEEcCCCccCCCCCEEEEEecCCCcch-----------HHHHHHHHHHHHHHHcCCCCC
Confidence 788999999999999999999999999999999877654 368999999999999987643
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.45 E-value=4.3e-13 Score=126.15 Aligned_cols=115 Identities=29% Similarity=0.356 Sum_probs=92.4
Q ss_pred CCCCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHH
Q psy2951 706 ISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKL 785 (1466)
Q Consensus 706 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~ 785 (1466)
|.+| +.+.++ +.+++..+. ..+++++|||||++|+|+|..|+++|.+||+++|.++++ +.+++++.+.+.+.
T Consensus 1 P~~~-~~~~i~---~s~~~l~~~---~~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il-~~~d~~~~~~l~~~ 72 (117)
T d1ebda2 1 PNFK-FSNRIL---DSTGALNLG---EVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEIL-SGFEKQMAAIIKKR 72 (117)
T ss_dssp TTBC-CCSSEE---CHHHHHTCS---SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS-TTSCHHHHHHHHHH
T ss_pred CcCC-CCCCEE---ChhHhhChh---hcCCeEEEECCCccceeeeeeecccccEEEEEEecceec-ccccchhHHHHHHH
Confidence 4556 555554 556665554 348999999999999999999999999999999999988 57999999999999
Q ss_pred HHhcCcEEEccceEEEEEecCCCceEEEECCCC--cEEecCEEEEc
Q psy2951 786 FESKGVKFVMKANVSSFEKNEKNDVTAANLDNG--TTIPADLVIVG 829 (1466)
Q Consensus 786 l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~vi~a 829 (1466)
|+++||++++++++++++..+++ +......+| +++++|.||++
T Consensus 73 l~~~GI~i~~~~~v~~i~~~~~~-~~v~~~~~g~~~~i~~D~Vlvs 117 (117)
T d1ebda2 73 LKKKGVEVVTNALAKGAEEREDG-VTVTYEANGETKTIDADYVLVT 117 (117)
T ss_dssp HHHTTCEEEESEEEEEEEEETTE-EEEEEEETTEEEEEEESEEEEC
T ss_pred HHhcCCEEEcCCEEEEEEEcCCE-EEEEEEeCCCEEEEEeEEEEEC
Confidence 99999999999999999855443 322222333 57999999974
|
| >d2jzaa1 b.33.1.3 (A:1-122) NADH-nitrite reductase small subunit NirD {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: NirD-like domain: NADH-nitrite reductase small subunit NirD species: Erwinia carotovora [TaxId: 554]
Probab=99.44 E-value=5.2e-14 Score=132.27 Aligned_cols=78 Identities=17% Similarity=0.245 Sum_probs=63.6
Q ss_pred CCCCEEEEE-eeCCeEEEEeCCCCCCCcc-cCCceec----CCEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcC
Q psy2951 493 SSTPKTLAQ-STTSNIYAVGTKCSHYGAP-LVKGSLG----DGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQND 566 (1466)
Q Consensus 493 ~~~~~~~~~-~~~g~~~a~~~~C~H~~~~-l~~g~~~----~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~ 566 (1466)
++..+++++ +.+|++||++|.|||+|++ |+.|.+. +..|.||||+|+|+++||+|...|+. +|+.|+++++++
T Consensus 24 ~g~~v~l~~~~~~g~v~A~~~~CpH~g~~ll~~G~v~~~~~~~~i~Cp~Hg~~F~l~tG~~~~~p~~-~l~~~~v~v~~g 102 (122)
T d2jzaa1 24 EQQQIAVFRPRNDEQVYAISNIDPFAQASVLSRGIVAEHQDDLWVASPLKKQHFRLYDGFCLEDGAY-SVAAYDTQVTNG 102 (122)
T ss_dssp TTEEEEEEBCSSSSCCEEEBCCCTTTSSGGGTSSEEEESSSSEEEECSSSCCEEETTTCCBSSCCSS-CCBCCCEEESSS
T ss_pred CCEEEEEEEEcCCCEEEEEecCCCcccccccccceeeeccCCCEEECCCCCCeeecccceeeecccc-CCCccceEEECC
Confidence 334445554 3578999999999999999 6888763 34699999999999999999999874 799999999777
Q ss_pred eEEEE
Q psy2951 567 DSVVV 571 (1466)
Q Consensus 567 ~~~~~ 571 (1466)
.+|+-
T Consensus 103 ~V~v~ 107 (122)
T d2jzaa1 103 NVQIS 107 (122)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 76653
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.43 E-value=3.3e-13 Score=146.63 Aligned_cols=58 Identities=29% Similarity=0.414 Sum_probs=51.4
Q ss_pred cccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCC
Q psy2951 839 LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK 907 (1466)
Q Consensus 839 ~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~ 907 (1466)
++..+++++++|+|.||+++|||.|+|||+|||+..+... +.|..||+.||+++++.+
T Consensus 178 l~~~gv~~~~~G~I~vd~~~~Ts~~~iyA~GDv~~~~~~~-----------~~A~~eg~~aa~~~~~~~ 235 (240)
T d1feca1 178 LEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRVMLT-----------PVAINEGAAFVDTVFANK 235 (240)
T ss_dssp GGGGTCCBCTTSCBCCCTTCBCSSTTEEECGGGGCSCCCH-----------HHHHHHHHHHHHHHHSSC
T ss_pred ccccCeEECCCCcEEcCcccCcCCCCEEEEEECCCCccch-----------hhHHHHHHHHHHHHhCCC
Confidence 4667889999999999999999999999999998776543 689999999999999864
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.43 E-value=1.3e-13 Score=149.00 Aligned_cols=158 Identities=20% Similarity=0.270 Sum_probs=116.1
Q ss_pred cEEEECCChHHHHHHHHHhccCCeEEEEeecCccCc---------------------------------c---------c
Q psy2951 736 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQ---------------------------------E---------S 773 (1466)
Q Consensus 736 ~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~---------------------------------~---------~ 773 (1466)
.|+|||+|+.|+.+|..+++.|.+|.++++...... . .
T Consensus 5 DviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~~~~~~gg~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~ 84 (229)
T d3lada1 5 DVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTGEVA 84 (229)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEECSCCE
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCCccccccccccccccchhhhhhhhhhhhhhhhhhhhhcccccCcce
Confidence 589999999999999999999999999986431000 0 0
Q ss_pred cC------------HHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCC--CcEEecCEEEEccccccCcc--
Q psy2951 774 LG------------KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDN--GTTIPADLVIVGIGTVLNTN-- 837 (1466)
Q Consensus 774 ~~------------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~--g~~i~~D~vi~a~G~~p~~~-- 837 (1466)
++ ..+...+...++..||+++.+...... . ........+ ...+.++.+++++|.+|...
T Consensus 85 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~gV~vi~G~~~~~~----~-~~~~~~~~~~~~~~~~~~~~i~atG~~~~~~~~ 159 (229)
T d3lada1 85 IDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLA----G-KKVEVTAADGSSQVLDTENVILASGSKPVEIPR 159 (229)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEECS----T-TCEEEECTTSCEEEECCSCEEECCCEEECCCTE
T ss_pred eecchhhhhhhHHHHHhhhhHHHHhhcCCeEEEEeEEcccc----c-ceeeccccCccceeeecccccccCCcccccccc
Confidence 00 111233455667788988866533211 1 112233333 23678999999999887543
Q ss_pred -------ccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCCc
Q psy2951 838 -------YLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS 909 (1466)
Q Consensus 838 -------~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~~ 909 (1466)
++++.|+.+|++|+|.+|++++|+.|+|||+|||...+... +.|..+|+.||++|+|++..
T Consensus 160 ~~~~~~~~~~~~gv~l~~~G~i~vd~~~~T~vpgiyA~GDv~~g~~l~-----------~~A~~~G~~aa~~i~g~~~~ 227 (229)
T d3lada1 160 RPVTTDLLAADSGVTLDERGFIYVDDYCATSVPGVYAIGDVVRGAMLA-----------HKASEEGVVVAERIAGHKAQ 227 (229)
T ss_dssp EECCTTCCSSCCSCCBCTTSCBCCCTTSBCSSTTEEECGGGSSSCCCH-----------HHHHHHHHHHHHHHHHCCCC
T ss_pred cccccccchHhcCeeecCCCcEEecccccCCCCCEEEEeCCcchHHHH-----------HHHHHHHHHHHHHHcCCCCC
Confidence 56788999999999999999999999999999998776543 68999999999999987653
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.43 E-value=3.3e-13 Score=126.77 Aligned_cols=108 Identities=21% Similarity=0.274 Sum_probs=88.7
Q ss_pred CHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEEcCceE
Q psy2951 168 TVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANV 247 (1466)
Q Consensus 168 ~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v 247 (1466)
+.+++..++. .+++++|||||++|+|+|..|+++|++||++++.++++ +.+++++.+.+++.|+++||++++++++
T Consensus 11 ~s~~~l~l~~---~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll-~~~d~ei~~~l~~~l~~~Gv~i~~~~~v 86 (119)
T d3lada2 11 DSTGALDFQN---VPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFL-PAVDEQVAKEAQKILTKQGLKILLGARV 86 (119)
T ss_dssp EHHHHTSCSS---CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS-TTSCHHHHHHHHHHHHHTTEEEEETCEE
T ss_pred chhHhhCccc---CCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccC-CcccchhHHHHHHHHHhcCceeecCcEE
Confidence 4566655543 35799999999999999999999999999999998876 5789999999999999999999999999
Q ss_pred EEEEecCCCCeEEEEc-CCCcEEeccEEEEeec
Q psy2951 248 SSFEKNEKNDVTAANL-DNGTTIPADLVIVGIG 279 (1466)
Q Consensus 248 ~~i~~~~~~~~~~v~~-~~g~~i~~D~Vi~a~G 279 (1466)
++++.++++-...... ++++++.+|.|++|+|
T Consensus 87 ~~i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG 119 (119)
T d3lada2 87 TGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG 119 (119)
T ss_dssp EEEEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred EEEEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence 9998865431112222 2235799999999998
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.42 E-value=2.9e-13 Score=126.67 Aligned_cols=106 Identities=18% Similarity=0.271 Sum_probs=86.4
Q ss_pred CHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceE
Q psy2951 720 TVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANV 799 (1466)
Q Consensus 720 ~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v 799 (1466)
+.+++..+ ...+++++|||||++|+|+|..|+++|++||++++.++++ +.+++++.+.+.+.|+++||+++++++|
T Consensus 10 ~s~~~l~~---~~~p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il-~~~d~~~~~~l~~~l~~~gV~i~~~~~V 85 (115)
T d1lvla2 10 SSTEALAP---KALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERIL-PTYDSELTAPVAESLKKLGIALHLGHSV 85 (115)
T ss_dssp CHHHHTCC---SSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSS-TTSCHHHHHHHHHHHHHHTCEEETTCEE
T ss_pred CChHHhCc---ccCCCeEEEECCCHHHHHHHHHHhhcccceEEEeeecccc-ccccchhHHHHHHHHHhhcceEEcCcEE
Confidence 44554433 2348999999999999999999999999999999999888 5789999999999999999999999999
Q ss_pred EEEEecCCCceEEEECCCCcEEecCEEEEccc
Q psy2951 800 SSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 831 (1466)
Q Consensus 800 ~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G 831 (1466)
++++. +..+......++++++||.||+|+|
T Consensus 86 ~~i~~--~~~~~~~~~~~~~~i~~D~vi~A~G 115 (115)
T d1lvla2 86 EGYEN--GCLLANDGKGGQLRLEADRVLVAVG 115 (115)
T ss_dssp EEEET--TEEEEECSSSCCCEECCSCEEECCC
T ss_pred EEEcC--CeEEEEEcCCCeEEEEcCEEEEecC
Confidence 99972 2222222223345899999999998
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=99.42 E-value=4.1e-13 Score=144.52 Aligned_cols=163 Identities=22% Similarity=0.239 Sum_probs=110.7
Q ss_pred eEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcc-------------------------------------------
Q psy2951 1207 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQE------------------------------------------- 1243 (1466)
Q Consensus 1207 ~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~------------------------------------------- 1243 (1466)
.|+|||+|+.|+.+|.++++.|.+|+++++.+.+-..
T Consensus 8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~GG~~~~~g~~~~~~~~~~a~~~~~~~~~~~~G~~~~~~~~~~~~~~ 87 (229)
T d1ojta1 8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPELDIDMLR 87 (229)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCCHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeccccchhhhhhhhhhhHHhhhhHhhcCCcccCCcccHHHHH
Confidence 5999999999999999999999999999976532100
Q ss_pred ----cccHHHHHHHHHHHHhCCcEEEcCceEEEEE--------ecCCCcEEEEEcCCCCeeecCEEEEeec-cccCcc--
Q psy2951 1244 ----SLGKEVGERITKLFESKGVKFVMKANVSSFE--------KNEKNDVTAANLDNGTTIPADLVIVGIG-TVLNTN-- 1308 (1466)
Q Consensus 1244 ----~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~--------~~~~g~~~~v~l~~g~~i~~D~vv~a~G-~~p~~~-- 1308 (1466)
.....+...+..+...++++++.+.....-. ........ ..........+|-++++.| ..|++.
T Consensus 88 ~~~~~~~~~l~~~~~~~~~~~~v~vi~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 166 (229)
T d1ojta1 88 AYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQA-APTGEKKIVAFKNCIIAAGSRAPNGKLI 166 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEEEEEEEEEEETTEE-EEEEEEEEEEEEEEEECCCEEEECGGGT
T ss_pred HHHHHHHHHHhcchHhHhhcCceEEEEeeeeecCCcccccccccccccccc-cccccccceecceEEEEecccCCccccc
Confidence 0001222334556677788877544221110 00000000 0001112345555555555 445544
Q ss_pred ccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCCCCCC
Q psy2951 1309 YLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSL 1381 (1466)
Q Consensus 1309 ~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~~~~ 1381 (1466)
+++..|++++++|+|.||+++|||.|+|||+|||+..|... +.|..||+.||.+|+|+...+
T Consensus 167 ~~e~~g~~~d~~G~I~vd~~~~TsvpgVyAaGDv~~~~~l~-----------~~A~~eG~~Aa~~i~G~~~~~ 228 (229)
T d1ojta1 167 SAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPMLA-----------HKAVHEGHVAAENCAGHKAYF 228 (229)
T ss_dssp TGGGTTCCCCTTSCCCCCTTSBCSSTTEEECGGGTCSSCCH-----------HHHHHHHHHHHHHHTTCCCCC
T ss_pred chhhhCccCCCCCCEEcCCCccCCCCCEEEEEecCCCcchH-----------HHHHHHHHHHHHHHcCCCCCC
Confidence 67889999999999999999999999999999998877543 679999999999999976543
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=99.42 E-value=3.5e-13 Score=140.19 Aligned_cols=158 Identities=19% Similarity=0.198 Sum_probs=110.8
Q ss_pred CCcEEEECCChHHHHHHHHHhccC--CeEEEEeecCccCccccCHHHHH---------HHHHHHHhcCcEEEccceEEEE
Q psy2951 734 ESNVVVIGSSFIGMEAAAFCASKV--KSVTVVGRGAVPFQESLGKEVGE---------RITKLFESKGVKFVMKANVSSF 802 (1466)
Q Consensus 734 ~~~vvVvG~G~~g~e~A~~l~~~g--~~V~lv~~~~~~~~~~~~~~~~~---------~~~~~l~~~gv~~~~~~~v~~i 802 (1466)
||||+|||||++|+|+|..|++++ .+||++++.+..+.......... .....+...++.++.+. +..+
T Consensus 2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~ 80 (186)
T d1fcda1 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHDS-ATGI 80 (186)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHHHTTTEEEECCC-EEEC
T ss_pred CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhhhhhhhccccceeEeeee-eEee
Confidence 899999999999999999999987 58999998875443322222211 11234566788887654 3333
Q ss_pred EecCCCceEEEECCCCcEEecCEEEEccccccCccccccC--------CceeeCCCcEEeC-CCC-CCCCCCeEEecccc
Q psy2951 803 EKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGK--------GVELNGQKAVVVN-EYL-ETNVPGVYAGGDIA 872 (1466)
Q Consensus 803 ~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~--------gl~~~~~G~i~vd-~~~-~t~~~~iya~GD~~ 872 (1466)
.. .. ..+.+.+++++++|.+|+|+|.+|++.++... ++..+ .+++.++ ..+ .++.++||++||++
T Consensus 81 ~~--~~--~~~~~~~~~~i~~D~li~atG~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~iGd~~ 155 (186)
T d1fcda1 81 DP--DK--KLVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIAQIAGLTND-AGWCPVDIKTFESSIHKGIHVIGDAS 155 (186)
T ss_dssp CT--TT--TEEEETTSCEEECSEEEECCCEEECCTTSTEEECHHHHHHTCCCT-TSSEEBCSSSCBBSSSTTEEECTTSE
T ss_pred ee--cc--ceeecccceeeccceEEEEeccccchhhhhhhhhhheeccCcccc-cccccceeeeeecccccCceEecccc
Confidence 31 11 24677889999999999999999998765432 23233 3455554 334 36799999999998
Q ss_pred ccCCcccCCceeeeccHHHHHHHHHHHHHHhcc
Q psy2951 873 YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVE 905 (1466)
Q Consensus 873 ~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~ 905 (1466)
..... +..++.|..||+.+|+||..
T Consensus 156 ~~~~~--------p~~~~~A~~q~~~~A~ni~~ 180 (186)
T d1fcda1 156 IANPM--------PKSGYSANSQGKVAAAAVVV 180 (186)
T ss_dssp ECTTC--------CSSHHHHHHHHHHHHHHHHH
T ss_pred ccCCC--------CchHhHHHHHHHHHHHHHHH
Confidence 65432 24678999999999999974
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=99.41 E-value=5.4e-13 Score=126.72 Aligned_cols=113 Identities=22% Similarity=0.338 Sum_probs=94.3
Q ss_pred cEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEE
Q psy2951 1185 KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKF 1264 (1466)
Q Consensus 1185 ~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~ 1264 (1466)
++|...++.+. + . ..++++++|||+|++|+|+|..|+++|.+|+++++.+.+++ .+++++++.+.+.++++||++
T Consensus 6 gv~~~~~~~~~--l-~-~~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l~-~~d~~~~~~~~~~l~~~gI~v 80 (121)
T d1mo9a2 6 GVFDHATLVEE--L-D-YEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKL-IKDNETRAYVLDRMKEQGMEI 80 (121)
T ss_dssp TEEEHHHHHHH--C-C-SCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT-CCSHHHHHHHHHHHHHTTCEE
T ss_pred CEEeHHHHHHH--H-h-hCCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhhc-ccccchhhhhhhhhhccccEE
Confidence 77866655443 1 1 23479999999999999999999999999999999998884 889999999999999999999
Q ss_pred EcCceEEEEEecCCCcEEEE---EcCCCCeeecCEEEEeec
Q psy2951 1265 VMKANVSSFEKNEKNDVTAA---NLDNGTTIPADLVIVGIG 1302 (1466)
Q Consensus 1265 ~~~~~v~~i~~~~~g~~~~v---~l~~g~~i~~D~vv~a~G 1302 (1466)
++++++++++..+++....+ .+.++++++||+|++|+|
T Consensus 81 ~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G 121 (121)
T d1mo9a2 81 ISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG 121 (121)
T ss_dssp ESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred EcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence 99999999985555554433 345667899999999987
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.41 E-value=2.5e-13 Score=146.74 Aligned_cols=158 Identities=22% Similarity=0.285 Sum_probs=118.5
Q ss_pred eEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCc---------------------------------cccc-------
Q psy2951 1207 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQ---------------------------------ESLG------- 1246 (1466)
Q Consensus 1207 ~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~---------------------------------~~~~------- 1246 (1466)
.|+|||+|+.|+.+|..+++.|.+|.++++...+.. ...+
T Consensus 5 DviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~~~~~~gg~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~ 84 (229)
T d3lada1 5 DVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTGEVA 84 (229)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEECSCCE
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCCccccccccccccccchhhhhhhhhhhhhhhhhhhhhcccccCcce
Confidence 599999999999999999999999999986532100 0000
Q ss_pred --------------HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCC--CeeecCEEEEeeccccCcc--
Q psy2951 1247 --------------KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG--TTIPADLVIVGIGTVLNTN-- 1308 (1466)
Q Consensus 1247 --------------~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g--~~i~~D~vv~a~G~~p~~~-- 1308 (1466)
..+...+..+++..||+++.+..... .. ........++ .++.++.+++++|..|...
T Consensus 85 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~gV~vi~G~~~~~----~~-~~~~~~~~~~~~~~~~~~~~i~atG~~~~~~~~ 159 (229)
T d3lada1 85 IDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLL----AG-KKVEVTAADGSSQVLDTENVILASGSKPVEIPR 159 (229)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEEC----ST-TCEEEECTTSCEEEECCSCEEECCCEEECCCTE
T ss_pred eecchhhhhhhHHHHHhhhhHHHHhhcCCeEEEEeEEccc----cc-ceeeccccCccceeeecccccccCCcccccccc
Confidence 12233456667888999886643321 11 1122333332 4678999999999887543
Q ss_pred -------ccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCCCCC
Q psy2951 1309 -------YLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTS 1380 (1466)
Q Consensus 1309 -------~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~~~ 1380 (1466)
++.+.|+.++++|+|.||++++|+.|+|||+|||...|... +.|..+|+.||.+|+|+...
T Consensus 160 ~~~~~~~~~~~~gv~l~~~G~i~vd~~~~T~vpgiyA~GDv~~g~~l~-----------~~A~~~G~~aa~~i~g~~~~ 227 (229)
T d3lada1 160 RPVTTDLLAADSGVTLDERGFIYVDDYCATSVPGVYAIGDVVRGAMLA-----------HKASEEGVVVAERIAGHKAQ 227 (229)
T ss_dssp EECCTTCCSSCCSCCBCTTSCBCCCTTSBCSSTTEEECGGGSSSCCCH-----------HHHHHHHHHHHHHHHHCCCC
T ss_pred cccccccchHhcCeeecCCCcEEecccccCCCCCEEEEeCCcchHHHH-----------HHHHHHHHHHHHHHcCCCCC
Confidence 67788999999999999999999999999999998877654 67999999999999997654
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.41 E-value=9.5e-13 Score=124.10 Aligned_cols=106 Identities=21% Similarity=0.344 Sum_probs=91.0
Q ss_pred CHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceE
Q psy2951 1191 TVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANV 1270 (1466)
Q Consensus 1191 ~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v 1270 (1466)
+.+++..+. ...++++|||+|++|+|+|..|+++|.+||++++.+++++ .+++++++.+.+.++++||++++++++
T Consensus 12 ts~~~~~l~---~~p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~-~~d~ei~~~l~~~l~~~GV~i~~~~~v 87 (122)
T d1v59a2 12 SSTGALSLK---EIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGA-SMDGEVAKATQKFLKKQGLDFKLSTKV 87 (122)
T ss_dssp CHHHHTTCS---SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSS-SSCHHHHHHHHHHHHHTTCEEECSEEE
T ss_pred ehHHhhCcc---cCCCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccch-hhhhhhHHHHHHHHHhccceEEeCCEE
Confidence 456765443 3468999999999999999999999999999999999996 689999999999999999999999999
Q ss_pred EEEEecCCCcEEEEEcCCC-----CeeecCEEEEe
Q psy2951 1271 SSFEKNEKNDVTAANLDNG-----TTIPADLVIVG 1300 (1466)
Q Consensus 1271 ~~i~~~~~g~~~~v~l~~g-----~~i~~D~vv~a 1300 (1466)
++++..+++....+.+.++ ++++||.|++|
T Consensus 88 ~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA 122 (122)
T d1v59a2 88 ISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA 122 (122)
T ss_dssp EEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred EEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence 9998555666666776554 47899999985
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.40 E-value=1.6e-12 Score=122.20 Aligned_cols=114 Identities=29% Similarity=0.368 Sum_probs=91.8
Q ss_pred CCCCCCcEEEecCHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHH
Q psy2951 156 QADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFE 235 (1466)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~ 235 (1466)
.+++.+.++ +.+++..+.. .+++++|||||++|+|+|..++++|.+||++++.+.++ +.+++++.+.+.+.|+
T Consensus 2 ~~~~~~~i~---~s~~~l~~~~---~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il-~~~d~~~~~~l~~~l~ 74 (117)
T d1ebda2 2 NFKFSNRIL---DSTGALNLGE---VPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEIL-SGFEKQMAAIIKKRLK 74 (117)
T ss_dssp TBCCCSSEE---CHHHHHTCSS---CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS-TTSCHHHHHHHHHHHH
T ss_pred cCCCCCCEE---ChhHhhChhh---cCCeEEEECCCccceeeeeeecccccEEEEEEecceec-ccccchhHHHHHHHHH
Confidence 445555554 5666666553 35799999999999999999999999999999999887 5689999999999999
Q ss_pred hCCcEEEcCceEEEEEecCCCCeEEEEcCCC--cEEeccEEEEe
Q psy2951 236 SKGVKFVMKANVSSFEKNEKNDVTAANLDNG--TTIPADLVIVG 277 (1466)
Q Consensus 236 ~~GV~i~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~Vi~a 277 (1466)
++||++++++.+++++.++++ +......+| +++++|.|+++
T Consensus 75 ~~GI~i~~~~~v~~i~~~~~~-~~v~~~~~g~~~~i~~D~Vlvs 117 (117)
T d1ebda2 75 KKGVEVVTNALAKGAEEREDG-VTVTYEANGETKTIDADYVLVT 117 (117)
T ss_dssp HTTCEEEESEEEEEEEEETTE-EEEEEEETTEEEEEEESEEEEC
T ss_pred hcCCEEEcCCEEEEEEEcCCE-EEEEEEeCCCEEEEEeEEEEEC
Confidence 999999999999999876543 332223333 57999999974
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.40 E-value=7e-13 Score=141.76 Aligned_cols=157 Identities=20% Similarity=0.258 Sum_probs=110.7
Q ss_pred CCcEEEECCChHHHHHHHHHhccCCeEEEEeecCcc--------------------------------C-----ccccC-
Q psy2951 734 ESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP--------------------------------F-----QESLG- 775 (1466)
Q Consensus 734 ~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~--------------------------------~-----~~~~~- 775 (1466)
.-.++|||+|+.|+++|..++++|.+|+|+++.+.- . .....
T Consensus 5 ~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~~GG~c~~~gc~p~k~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 84 (220)
T d1lvla1 5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPRLDI 84 (220)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCCCH
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcccccccccchhhhhhHHHHhhhhhccccccceEEeccceehH
Confidence 457999999999999999999999999999865310 0 00000
Q ss_pred -----------HHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCcc-------
Q psy2951 776 -----------KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTN------- 837 (1466)
Q Consensus 776 -----------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~------- 837 (1466)
..........+.+.++.++.+..... . .. . ...++.++.+|.+|+|||.+|...
T Consensus 85 ~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~~~~~-~--~~----~-~~~~~~~i~a~~viiAtG~~p~~lp~~~~~~ 156 (220)
T d1lvla1 85 GQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVL-D--GK----Q-VEVDGQRIQCEHLLLATGSSSVELPRRPRTK 156 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEE-E--TT----E-EEETTEEEECSEEEECCCEEECCBTEEECCS
T ss_pred HHHhhhheeEEeeeccchhhhhccCceEEEEeeeccc-C--cc----c-ccccceeEeeceeeEcCCCCccccccccccc
Confidence 00112233456677888876643211 1 11 1 112456899999999999988641
Q ss_pred --ccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCCCcC
Q psy2951 838 --YLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSL 910 (1466)
Q Consensus 838 --~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~~~~ 910 (1466)
.+...+++++ +|+|.||+++||+.|+|||+|||+..+.. ++.|..||+.||++|+|+...+
T Consensus 157 ~~~~~~~~~~~~-~g~i~vd~~~~T~~~~I~A~GDv~~~~~l-----------~~~a~~~g~~~a~~i~G~~~~~ 219 (220)
T d1lvla1 157 GFNLECLDLKMN-GAAIAIDERCQTSMHNVWAIGDVAGEPML-----------AHRAMAQGEMVAEIIAGKARRF 219 (220)
T ss_dssp SSSGGGSCCCEE-TTEECCCTTCBCSSTTEEECGGGGCSSCC-----------HHHHHHHHHHHHHHHTTCCCCC
T ss_pred CCcceeeehhhc-CCcccccchhhcCCCCEEEEEEeCCcccc-----------hhhhhhhHHHHHHHHcCCCCCC
Confidence 1333445554 57899999999999999999999987654 4789999999999999986543
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.40 E-value=2.2e-12 Score=137.85 Aligned_cols=156 Identities=21% Similarity=0.270 Sum_probs=113.9
Q ss_pred CeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcC--------------------------------Ccccc-------c
Q psy2951 1206 SNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP--------------------------------FQESL-------G 1246 (1466)
Q Consensus 1206 ~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~--------------------------------~~~~~-------~ 1246 (1466)
.+++|||+|+.|+++|..++++|.+|+++++...- +.... .
T Consensus 6 ~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~~GG~c~~~gc~p~k~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 85 (220)
T d1lvla1 6 TTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPRLDIG 85 (220)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCCCHH
T ss_pred cCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcccccccccchhhhhhHHHHhhhhhccccccceEEeccceehHH
Confidence 47999999999999999999999999999975310 00000 0
Q ss_pred ----------HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccCcc--------
Q psy2951 1247 ----------KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTN-------- 1308 (1466)
Q Consensus 1247 ----------~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~~~-------- 1308 (1466)
.........++++.+++++.+... +. ... ....++.++.+|.+++|+|..|...
T Consensus 86 ~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~~~--~~-~~~-----~~~~~~~~i~a~~viiAtG~~p~~lp~~~~~~~ 157 (220)
T d1lvla1 86 QSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAK--VL-DGK-----QVEVDGQRIQCEHLLLATGSSSVELPRRPRTKG 157 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEE--EE-ETT-----EEEETTEEEECSEEEECCCEEECCBTEEECCSS
T ss_pred HHhhhheeEEeeeccchhhhhccCceEEEEeeec--cc-Ccc-----cccccceeEeeceeeEcCCCCcccccccccccC
Confidence 112223455677888888766432 22 111 1123557899999999999988642
Q ss_pred -ccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCCCCCC
Q psy2951 1309 -YLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKTSL 1381 (1466)
Q Consensus 1309 -~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~~~~ 1381 (1466)
.+...++.++ +|+|.||+++||+.|+|||+|||+..|... +.|..||++||++|+|+...+
T Consensus 158 ~~~~~~~~~~~-~g~i~vd~~~~T~~~~I~A~GDv~~~~~l~-----------~~a~~~g~~~a~~i~G~~~~~ 219 (220)
T d1lvla1 158 FNLECLDLKMN-GAAIAIDERCQTSMHNVWAIGDVAGEPMLA-----------HRAMAQGEMVAEIIAGKARRF 219 (220)
T ss_dssp SSGGGSCCCEE-TTEECCCTTCBCSSTTEEECGGGGCSSCCH-----------HHHHHHHHHHHHHHTTCCCCC
T ss_pred Ccceeeehhhc-CCcccccchhhcCCCCEEEEEEeCCcccch-----------hhhhhhHHHHHHHHcCCCCCC
Confidence 2344556666 568999999999999999999999877654 789999999999999987544
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.40 E-value=4.1e-13 Score=126.97 Aligned_cols=107 Identities=24% Similarity=0.378 Sum_probs=88.8
Q ss_pred CHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceE
Q psy2951 720 TVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANV 799 (1466)
Q Consensus 720 ~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v 799 (1466)
+.+++..+. ..+++++|||+|++|+|+|..++++|.+||+++|.++++ +.+++++.+.+.+.|+++||++++++++
T Consensus 14 ts~~~l~l~---~~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l-~~~d~~~~~~l~~~l~~~GI~i~~~~~v 89 (123)
T d1dxla2 14 SSTGALALS---EIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV-PTMDAEIRKQFQRSLEKQGMKFKLKTKV 89 (123)
T ss_dssp CHHHHTTCS---SCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS-TTSCHHHHHHHHHHHHHSSCCEECSEEE
T ss_pred eHHHhhCcc---ccCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccC-chhhhcchhhhhhhhhcccceEEcCCce
Confidence 445554433 358999999999999999999999999999999999988 6799999999999999999999999999
Q ss_pred EEEEecCCCceEEEECC-CC--cEEecCEEEEcc
Q psy2951 800 SSFEKNEKNDVTAANLD-NG--TTIPADLVIVGI 830 (1466)
Q Consensus 800 ~~i~~~~~~~~~~v~~~-~g--~~i~~D~vi~a~ 830 (1466)
++++..+++....+... +| ++++||.|++|.
T Consensus 90 ~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvAA 123 (123)
T d1dxla2 90 VGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSA 123 (123)
T ss_dssp EEEECSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred EEEEEccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence 99996555544445443 33 368999999873
|
| >d1z01a1 b.33.1.2 (A:16-163) 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Ring hydroxylating alpha subunit ISP domain domain: 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO species: Pseudomonas putida [TaxId: 303]
Probab=99.39 E-value=3.5e-13 Score=131.75 Aligned_cols=80 Identities=19% Similarity=0.379 Sum_probs=67.6
Q ss_pred CCEEEEEeeCCeEEEEeCCCCCCCcccCCce--ecCCEEEccCCCceEECCCCeeecCCC--------CCCCCeEEEEEE
Q psy2951 495 TPKTLAQSTTSNIYAVGTKCSHYGAPLVKGS--LGDGRVRCPWHGACFNIATGDIEDFPG--------MDSLPCYKVTIQ 564 (1466)
Q Consensus 495 ~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~--~~~~~~~Cp~H~~~f~~~~G~~~~~p~--------~~~l~~~~v~i~ 564 (1466)
++.+++++.+|+++|++|.|||+|++|+.|. ..++.|+||||||+|++++|++...|. ..+|+.|++++.
T Consensus 50 g~~vvl~~~~g~i~A~~n~CpHrg~~L~~g~~~~~~~~i~Cp~Hgw~fd~~~G~~~~~p~~~~~~~~~~~~l~~y~v~~~ 129 (148)
T d1z01a1 50 GVPIVLRRVNGKVFALKDQCLHRGVRLSEKPTCFTKSTISCWYHGFTFDLETGKLVTIVANPEDKLIGTTGVTTYPVHEV 129 (148)
T ss_dssp TEEEEEEEETTEEEEEESSCTTTCCCGGGSCCCSSTTEEECTTTCEEEETTTCBEEEETTCTTCTTTTSCBCCEECEEEE
T ss_pred CEEEEEEEECCEEEEEEeecCccccEeEccccccccCEEEecccCCEEecCcceEecccccccccCCccCCcceEEEEEE
Confidence 3446678899999999999999999998875 456799999999999999999988765 246899999998
Q ss_pred cCeEEEEEcc
Q psy2951 565 NDDSVVVQAR 574 (1466)
Q Consensus 565 ~~~~~~~~~~ 574 (1466)
++.+|+....
T Consensus 130 ~g~I~v~l~~ 139 (148)
T d1z01a1 130 NGMIFVFVRE 139 (148)
T ss_dssp TTEEEEEECC
T ss_pred CCEEEEEeCC
Confidence 8888876543
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.39 E-value=9.9e-13 Score=136.80 Aligned_cols=155 Identities=27% Similarity=0.339 Sum_probs=120.3
Q ss_pred CcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCccc--------------------ccccCHHHHHHHHHHHHhCCcEEE
Q psy2951 183 SNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF--------------------QESLGKEVGERITKLFESKGVKFV 242 (1466)
Q Consensus 183 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~--------------------~~~~~~~~~~~l~~~l~~~GV~i~ 242 (1466)
++|+|||||++|+++|..+++.|.+|.++++..... ....++++...+.+..++.|+++.
T Consensus 6 ~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~q~~~~g~~i~ 85 (192)
T d1vdca1 6 TRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTIF 85 (192)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEE
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccccccchhhhccccccccccchHHHHHHHHHHHhhcceee
Confidence 689999999999999999999999999998543210 011236777888888888999998
Q ss_pred cCceEEEEEecCCCCeEEEEcCCCcEEeccEEEEeecc-----ccCccccccCCceecCCccEEECC-CCCcCCCCEEEe
Q psy2951 243 MKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGT-----VLNTNYLDGKGVELNGQKAVVVNE-YLETNVPGVYAG 316 (1466)
Q Consensus 243 ~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~-----~p~~~~l~~~gl~~~~~g~i~vd~-~~~t~~~~iya~ 316 (1466)
.+ .|.+++..+ ....+. .+.....+|.+++++|. .|++.++.. +++++++|+|.+|+ .++|+.|+|||+
T Consensus 86 ~~-~V~~~~~~~--~~~~v~-~~~~~~~~~~~~~a~g~~~~g~~p~~~~~~~-~veld~~G~i~~~~~~~~Ts~~GV~a~ 160 (192)
T d1vdca1 86 TE-TVTKVDFSS--KPFKLF-TDSKAILADAVILAIGAVAKGHEPATKFLDG-GVELDSDGYVVTKPGTTQTSVPGVFAA 160 (192)
T ss_dssp CC-CCCEEECSS--SSEEEE-CSSEEEEEEEEEECCCEEECCEEESCGGGTT-SSCBCTTSCBCCCTTSCBCSSTTEEEC
T ss_pred ee-eEEeccccc--CcEEec-ccceeeeeeeEEEEeeeeecccCchHHHhcC-ceeecCCCeEEeCCCceEecCCCEEEe
Confidence 65 577877543 233344 34567899999999985 477777654 68999999999985 789999999999
Q ss_pred cccccccCccCCCCcceeccHHHHHHHHHHHHHHhc
Q psy2951 317 GDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMV 352 (1466)
Q Consensus 317 GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 352 (1466)
|||.+.+. .+...|+.+|..||.++.
T Consensus 161 GDv~~~~~----------r~~v~A~g~G~~aA~~~~ 186 (192)
T d1vdca1 161 GDVQDKKY----------RQAITAAGTGCMAALDAE 186 (192)
T ss_dssp GGGGCSSC----------CCHHHHHHHHHHHHHHHH
T ss_pred eecCCccc----------ceEEEEEechHHHHHHHH
Confidence 99987542 245678899999998764
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=1.3e-12 Score=124.05 Aligned_cols=108 Identities=18% Similarity=0.255 Sum_probs=89.1
Q ss_pred CHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEEcCceE
Q psy2951 168 TVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANV 247 (1466)
Q Consensus 168 ~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v 247 (1466)
+.+++..+.. .+|+++|||||++|+|+|..|+++|.+||+++|++.++ +.+++++.+.+.+.|+++||++++++++
T Consensus 11 ts~~~~~l~~---~pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l-~~~d~~~~~~~~~~l~~~Gv~i~~~~~v 86 (125)
T d3grsa2 11 TSDGFFQLEE---LPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVEVLKFSQV 86 (125)
T ss_dssp CHHHHTTCCS---CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC-TTSCHHHHHHHHHHHHHTTCEEETTEEE
T ss_pred CHHHHhChhh---cCCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccc-cchhhHHHHHHHHHHHHCCCEEEeCCEE
Confidence 5666666543 34799999999999999999999999999999998877 5689999999999999999999999999
Q ss_pred EEEEecCCC-CeEEEEcCCC------cEEeccEEEEeec
Q psy2951 248 SSFEKNEKN-DVTAANLDNG------TTIPADLVIVGIG 279 (1466)
Q Consensus 248 ~~i~~~~~~-~~~~v~~~~g------~~i~~D~Vi~a~G 279 (1466)
++++.++++ .+..+...+| ..+++|.|+||+|
T Consensus 87 ~~i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G 125 (125)
T d3grsa2 87 KEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG 125 (125)
T ss_dssp EEEEEETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred EEEEEcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence 999876543 2233333444 2567999999987
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=99.38 E-value=6.6e-13 Score=138.04 Aligned_cols=158 Identities=20% Similarity=0.202 Sum_probs=111.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHhcCC--CeEEEEcCCCcCCcccccHHHHH---------HHHHHHHhCCcEEEcCceEEEE
Q psy2951 1205 ESNVVVIGSSFIGMEAAAFCASKV--KSVTVVGRGAVPFQESLGKEVGE---------RITKLFESKGVKFVMKANVSSF 1273 (1466)
Q Consensus 1205 ~~~vvVvG~g~~g~e~a~~l~~~g--~~v~vv~~~~~~~~~~~~~~~~~---------~l~~~~~~~gv~~~~~~~v~~i 1273 (1466)
+|+|+|||+|++|+|+|..|++.+ .+||++++.+..+...+.+.... .....+..+++.+..+. +..+
T Consensus 2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~ 80 (186)
T d1fcda1 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHDS-ATGI 80 (186)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHHHTTTEEEECCC-EEEC
T ss_pred CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhhhhhhhccccceeEeeee-eEee
Confidence 799999999999999999999987 58999998875543322221111 11234566788887654 4443
Q ss_pred EecCCCcEEEEEcCCCCeeecCEEEEeeccccCcccccc--------CCceeeCCCeEEeC-CCcc-ccCCCEEEecccc
Q psy2951 1274 EKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDG--------KGVELNGQKAVVVN-EYLE-TNVPGVYAGGDIA 1343 (1466)
Q Consensus 1274 ~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~~~~~~~--------~gl~~~~~G~i~vd-~~~~-t~~~~v~a~GD~a 1343 (1466)
. .... .+.+.+++++++|.+|+|+|..|+++++.. .++..+. +++.++ ..++ ++.++||++||++
T Consensus 81 ~--~~~~--~~~~~~~~~i~~D~li~atG~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~iGd~~ 155 (186)
T d1fcda1 81 D--PDKK--LVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIAQIAGLTNDA-GWCPVDIKTFESSIHKGIHVIGDAS 155 (186)
T ss_dssp C--TTTT--EEEETTSCEEECSEEEECCCEEECCTTSTEEECHHHHHHTCCCTT-SSEEBCSSSCBBSSSTTEEECTTSE
T ss_pred e--eccc--eeecccceeeccceEEEEeccccchhhhhhhhhhheeccCccccc-ccccceeeeeecccccCceEecccc
Confidence 3 2222 367789999999999999999999876543 2444443 456565 3344 5689999999998
Q ss_pred cCCCccCCCceeeeecHHHHHHHHHHHHHHhcC
Q psy2951 1344 YAPLHSFYNKNASIGHYQLAQYHGRIAALNMVE 1376 (1466)
Q Consensus 1344 ~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g 1376 (1466)
..... ...+..|..||+.+|+||+.
T Consensus 156 ~~~~~--------p~~~~~A~~q~~~~A~ni~~ 180 (186)
T d1fcda1 156 IANPM--------PKSGYSANSQGKVAAAAVVV 180 (186)
T ss_dssp ECTTC--------CSSHHHHHHHHHHHHHHHHH
T ss_pred ccCCC--------CchHhHHHHHHHHHHHHHHH
Confidence 65321 12468999999999999974
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.38 E-value=1.7e-12 Score=121.62 Aligned_cols=107 Identities=23% Similarity=0.421 Sum_probs=89.8
Q ss_pred cCHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHHHhcC---CCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEc
Q psy2951 1190 RTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASK---VKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVM 1266 (1466)
Q Consensus 1190 ~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~~---g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~ 1266 (1466)
.+.+++..+. ..+++++|||+|++|+|+|..+... +.+||++++.+++++ .+++++++.+.+.++++||++++
T Consensus 8 ~t~~~~~~l~---~~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~-~~d~~~~~~l~~~l~~~GV~v~~ 83 (117)
T d1aoga2 8 ISSNEAFYLP---EPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILR-GFDHTLREELTKQLTANGIQILT 83 (117)
T ss_dssp BCHHHHTTCS---SCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSST-TSCHHHHHHHHHHHHHTTCEEEE
T ss_pred EcHHHHhCch---hcCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhc-ccchHHHHHHHHHHHhcCcEEEc
Confidence 3566764433 3478999999999999999766544 568999999999995 78999999999999999999999
Q ss_pred CceEEEEEecCCCcEEEEEcCCCCeeecCEEEEee
Q psy2951 1267 KANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGI 1301 (1466)
Q Consensus 1267 ~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~ 1301 (1466)
++++++++...++. ..|.++||++++||.|++|+
T Consensus 84 ~~~v~~ie~~~~~~-~~v~~~~G~~i~~D~Vi~AI 117 (117)
T d1aoga2 84 KENPAKVELNADGS-KSVTFESGKKMDFDLVMMAI 117 (117)
T ss_dssp SCCEEEEEECTTSC-EEEEETTSCEEEESEEEECS
T ss_pred CCEEEEEEEcCCCe-EEEEECCCcEEEeCEEEEeC
Confidence 99999998444444 45999999999999999974
|
| >d1rfsa_ b.33.1.1 (A:) ISP subunit from chloroplast cytochrome bf complex {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Rieske iron-sulfur protein (ISP) domain: ISP subunit from chloroplast cytochrome bf complex species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=99.38 E-value=3.1e-13 Score=125.90 Aligned_cols=78 Identities=21% Similarity=0.379 Sum_probs=65.6
Q ss_pred CCCEEEEEeeC--CeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCeEEEE
Q psy2951 494 STPKTLAQSTT--SNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVV 571 (1466)
Q Consensus 494 ~~~~~~~~~~~--g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~~~ 571 (1466)
++...+++..+ ++++|+++.|||+|++|.++..+ +.++||||||+|+. +|++..+|+..+|++|+++++++.+++.
T Consensus 33 g~~~~lvv~~d~~~~v~A~~~~C~H~g~~l~~~~~~-~~~~Cp~Hg~~Fd~-~G~~~~~Pa~~~L~~~~v~v~~g~i~v~ 110 (127)
T d1rfsa_ 33 GDPTYLVVESDKTLATFGINAVCTHLGCVVPFNAAE-NKFICPCHGSQYNN-QGRVVRGPAPLSLALAHCDVDDGKVVFV 110 (127)
T ss_dssp GCEEEEEBCTTSSBCSEEEECBCTTTCCBCCEETTT-TEEECTTTCCEEET-TCCEEESSCCSCCCEEEEEEETTEEEEE
T ss_pred CCceEEEEEeCCCCEEEEEcCCCCCCCCCccCcccC-CeEEcCCCCeEECC-CCCCCcCCCCCCcceEeEEEECCEEEEE
Confidence 34455555443 47999999999999999988644 59999999999997 7999999999999999999998888876
Q ss_pred Ec
Q psy2951 572 QA 573 (1466)
Q Consensus 572 ~~ 573 (1466)
..
T Consensus 111 ~~ 112 (127)
T d1rfsa_ 111 PW 112 (127)
T ss_dssp EC
T ss_pred cC
Confidence 53
|
| >d2de6a1 b.33.1.2 (A:1-142) Terminal oxygenase component of carbazole CarAa {Janthinobacterium sp. j3 [TaxId: 213804]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Ring hydroxylating alpha subunit ISP domain domain: Terminal oxygenase component of carbazole CarAa species: Janthinobacterium sp. j3 [TaxId: 213804]
Probab=99.35 E-value=6.1e-13 Score=128.99 Aligned_cols=78 Identities=17% Similarity=0.289 Sum_probs=64.4
Q ss_pred CEEEEEeeCCeEEEEeCCCCCCCcccCCcee--cCCEEEccCCCceEECCCCeeecCCCC--------CCCCeEEEEEEc
Q psy2951 496 PKTLAQSTTSNIYAVGTKCSHYGAPLVKGSL--GDGRVRCPWHGACFNIATGDIEDFPGM--------DSLPCYKVTIQN 565 (1466)
Q Consensus 496 ~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~--~~~~~~Cp~H~~~f~~~~G~~~~~p~~--------~~l~~~~v~i~~ 565 (1466)
..++++|.+|+++|++|.|||+|++|+.|.. .++.|+||||||+|++++|.+...|.. .+|+.|++++.+
T Consensus 51 ~~ivv~r~~g~v~a~~n~CpHrga~L~~g~~~~~~~~i~Cp~Hgw~fdl~~G~~~~~p~~~~~~~~~~~~l~~y~v~e~~ 130 (142)
T d2de6a1 51 ENLLVNRIDGKLYCLKDRCLHRGVQLSVKVECKTKSTITCWYHAWTYRWEDGVLCDILTNPTSAQIGRQKLKTYPVQEAK 130 (142)
T ss_dssp EEEEEEEETTEEEEEESSCTTTCCCGGGGCCCCSTTEEECTTTCEEEETTTCBEEEETTCTTCTTTTSCBCCBCCEEEET
T ss_pred EEEEEEEcCCEEEEEeCccCCCCccCCccccccccCEEeccceeeEEeccCCceEecCCCcccCCccccCCCEEeEEEEC
Confidence 3455556799999999999999999998763 366899999999999999999877653 358899999988
Q ss_pred CeEEEEEc
Q psy2951 566 DDSVVVQA 573 (1466)
Q Consensus 566 ~~~~~~~~ 573 (1466)
|-+|+...
T Consensus 131 G~I~v~l~ 138 (142)
T d2de6a1 131 GCVFIYLG 138 (142)
T ss_dssp TEEEEEES
T ss_pred CEEEEEeC
Confidence 88877653
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.35 E-value=1.4e-12 Score=121.98 Aligned_cols=106 Identities=18% Similarity=0.277 Sum_probs=86.0
Q ss_pred CHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceE
Q psy2951 1191 TVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANV 1270 (1466)
Q Consensus 1191 ~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v 1270 (1466)
+.+++..+. ..+++++|||+|++|+|+|..|+++|++||++++.+++++ .+++++++.+.+.++++||+++++++|
T Consensus 10 ~s~~~l~~~---~~p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~-~~d~~~~~~l~~~l~~~gV~i~~~~~V 85 (115)
T d1lvla2 10 SSTEALAPK---ALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILP-TYDSELTAPVAESLKKLGIALHLGHSV 85 (115)
T ss_dssp CHHHHTCCS---SCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHHTCEEETTCEE
T ss_pred CChHHhCcc---cCCCeEEEECCCHHHHHHHHHHhhcccceEEEeeeccccc-cccchhHHHHHHHHHhhcceEEcCcEE
Confidence 345553332 3368999999999999999999999999999999999996 579999999999999999999999999
Q ss_pred EEEEecCCCcEEEEEcCCCCeeecCEEEEeec
Q psy2951 1271 SSFEKNEKNDVTAANLDNGTTIPADLVIVGIG 1302 (1466)
Q Consensus 1271 ~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G 1302 (1466)
++++ ++..+......++++++||.|++|+|
T Consensus 86 ~~i~--~~~~~~~~~~~~~~~i~~D~vi~A~G 115 (115)
T d1lvla2 86 EGYE--NGCLLANDGKGGQLRLEADRVLVAVG 115 (115)
T ss_dssp EEEE--TTEEEEECSSSCCCEECCSCEEECCC
T ss_pred EEEc--CCeEEEEEcCCCeEEEEcCEEEEecC
Confidence 9997 32222222222336799999999998
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.35 E-value=2.3e-12 Score=121.75 Aligned_cols=106 Identities=25% Similarity=0.384 Sum_probs=87.6
Q ss_pred CHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEEcCceE
Q psy2951 168 TVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANV 247 (1466)
Q Consensus 168 ~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v 247 (1466)
+.+++..+. ..+++++|||||++|+|+|..++++|.+||+++|++.++ +.+++++.+.+.+.|+++||++++++.+
T Consensus 14 ts~~~l~l~---~~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l-~~~d~~~~~~l~~~l~~~GI~i~~~~~v 89 (123)
T d1dxla2 14 SSTGALALS---EIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV-PTMDAEIRKQFQRSLEKQGMKFKLKTKV 89 (123)
T ss_dssp CHHHHTTCS---SCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS-TTSCHHHHHHHHHHHHHSSCCEECSEEE
T ss_pred eHHHhhCcc---ccCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccC-chhhhcchhhhhhhhhcccceEEcCCce
Confidence 455555544 245799999999999999999999999999999999887 5789999999999999999999999999
Q ss_pred EEEEecCCCCeEEEEcC-CC--cEEeccEEEEe
Q psy2951 248 SSFEKNEKNDVTAANLD-NG--TTIPADLVIVG 277 (1466)
Q Consensus 248 ~~i~~~~~~~~~~v~~~-~g--~~i~~D~Vi~a 277 (1466)
++++.++++....+... +| +++++|.|++|
T Consensus 90 ~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvA 122 (123)
T d1dxla2 90 VGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVS 122 (123)
T ss_dssp EEEECSSSSEEEEEEESSSCCCEEEEESEEECC
T ss_pred EEEEEccCeEEEEEEECCCCeEEEEEcCEEEEc
Confidence 99997654433334433 33 46899999987
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.34 E-value=1.2e-15 Score=164.86 Aligned_cols=168 Identities=17% Similarity=0.134 Sum_probs=101.3
Q ss_pred CCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhc-cCcccccccChhhhccCCcEEEcCCe
Q psy2951 1063 SGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD-IKADSILLRTEEFYKDNDIHVIKGKK 1141 (1466)
Q Consensus 1063 ~~~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~ 1141 (1466)
....++|+|||||+||++||..|+++|+ +++|+|+++.++........... .............+...... +.
T Consensus 46 ~~~~k~VvIIGaGpAGl~aA~~l~~~G~--~v~l~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~- 119 (233)
T d1djqa3 46 TKNKDSVLIVGAGPSGSEAARVLMESGY--TVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKK---NK- 119 (233)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSSSTTTTHHHHTTSTTCGGGGHHHHHHHHHHHHHHTT---CT-
T ss_pred ccCCceEEEEcccHHHHHHHHHHHHhcc--ceeeEeeccccCCccccccccceeecccccchhHHHHHHHHhhc---ce-
Confidence 3457899999999999999999999999 99999999877643221100000 00000000000111111000 01
Q ss_pred EEEeecCCCCeEEecCCcEEecCeEEEecCCCCCcCCCCCC--CCcEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHH
Q psy2951 1142 IISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADG--VNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGME 1219 (1466)
Q Consensus 1142 v~~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g--~~~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e 1219 (1466)
...+ +...+.+...+..++.||++|+|||+.++.+.++ + .+.....+ +...+......+++++|+|+|++|+|
T Consensus 120 ~~~~-~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~vvViGgG~~g~e 194 (233)
T d1djqa3 120 ESQL-ALGQKPMTADDVLQYGADKVIIATGASECTLWNE-LKARESEWAEN---DIKGIYLIGDAEAPRLIADATFTGHR 194 (233)
T ss_dssp TCEE-ECSCCCCCHHHHHTSCCSEEEECCCEECCHHHHH-HHHTTHHHHHT---TCCEEEECGGGTSCCCHHHHHHHHHH
T ss_pred eeee-ecccccccchhhhhhccceeeeccCCCccccccc-ccccccccchh---hhhhhhhccccCCceeEecCchHHHH
Confidence 0112 2233334444555678999999999987766543 2 11111111 11111111224789999999999999
Q ss_pred HHHHHhcCCCeEEEEcCCCcCC
Q psy2951 1220 AAAFCASKVKSVTVVGRGAVPF 1241 (1466)
Q Consensus 1220 ~a~~l~~~g~~v~vv~~~~~~~ 1241 (1466)
+|..|.+.|.+|+++++.+..+
T Consensus 195 ~A~~l~~~g~~Vtli~r~~~~~ 216 (233)
T d1djqa3 195 VAREIEEANPQIAIPYKRETIA 216 (233)
T ss_dssp HHHTTTSSCTTSCCCCCCCCCC
T ss_pred HHHHHHhcCCceEEEEeccccc
Confidence 9999999999999999987543
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.34 E-value=4.2e-12 Score=137.77 Aligned_cols=67 Identities=25% Similarity=0.323 Sum_probs=53.2
Q ss_pred cccccCccc--cccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCC
Q psy2951 830 IGTVLNTNY--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK 907 (1466)
Q Consensus 830 ~G~~p~~~~--~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~ 907 (1466)
.|..|++.. +...++.++ +|+|.||+++||+.|+|||+|||...+... +.|..||+.||++|+|++
T Consensus 167 ~~~~~~~~~l~~~~~gv~~~-~G~I~vde~~~T~~~~iyAvGDv~~~~~l~-----------~~A~~eg~~aa~~i~g~~ 234 (238)
T d1aoga1 167 NGRSPRTKDLQLQNAGVMIK-NGGVQVDEYSRTNVSNIYAIGDVTNRVMLT-----------PVAINEAAALVDTVFGTT 234 (238)
T ss_dssp CCEEECCGGGCGGGTTCCEE-TTEECCCTTCBCSSTTEEECGGGGTSCCCH-----------HHHHHHHHHHHHHHHSSS
T ss_pred cccccceeeecccccEEEEc-CCeEEecCCeeeccCCEEEEEEecCCccch-----------hhHHHHHHHHHHHHcCCC
Confidence 344455443 245677776 789999999999999999999998776543 689999999999999865
Q ss_pred C
Q psy2951 908 T 908 (1466)
Q Consensus 908 ~ 908 (1466)
.
T Consensus 235 ~ 235 (238)
T d1aoga1 235 P 235 (238)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=99.33 E-value=6.4e-12 Score=130.47 Aligned_cols=155 Identities=19% Similarity=0.281 Sum_probs=113.8
Q ss_pred CCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCcc---------------CccccCHHHHHHHHHHHHhcCcEEEccc
Q psy2951 733 PESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP---------------FQESLGKEVGERITKLFESKGVKFVMKA 797 (1466)
Q Consensus 733 ~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~---------------~~~~~~~~~~~~~~~~l~~~gv~~~~~~ 797 (1466)
+.++|+|||||++|+++|..+++.|.+|+|+++.+.. .....+.++.+.+.+.+.+.++++...
T Consensus 4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 82 (190)
T d1trba1 4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD- 82 (190)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECC-
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccccccchhhhhhccccccchHHHHHHHHHHHHhcCcEEecc-
Confidence 3678999999999999999999999999999876421 011234566777778888999998864
Q ss_pred eEEEEEecCCCceEEEECCCCcEEecCEEEEccccccC-----ccccccCCceeeCCCcEEeCC-----CCCCCCCCeEE
Q psy2951 798 NVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLN-----TNYLDGKGVELNGQKAVVVNE-----YLETNVPGVYA 867 (1466)
Q Consensus 798 ~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~-----~~~~~~~gl~~~~~G~i~vd~-----~~~t~~~~iya 867 (1466)
.|+++...++ ...+.. ....+.++.+++++|..|. ..+++. .++++ +|+|.+|. .++|+.|+|||
T Consensus 83 ~V~~~~~~~~--~~~v~~-~~~~~~~~~viva~G~~~~~~~~~~~~~~~-~~e~~-~g~i~~~~~~~~~~~~T~v~gV~a 157 (190)
T d1trba1 83 HINKVDLQNR--PFRLNG-DNGEYTCDALIIATGASARYHSPNTAIFEG-QLELE-NGYIKVQSGIHGNATQTSIPGVFA 157 (190)
T ss_dssp CEEEEECSSS--SEEEEE-SSCEEEEEEEEECCCEEECCEEESCGGGTT-TSCEE-TTEECCCCSSSSCTTBCSSTTEEE
T ss_pred eeEEEecCCC--cEEEEE-eeeeEeeeeeeeecceeeeeecccceeecc-eEecC-CcEEEEecCCcccccccccCeEEE
Confidence 5777773322 223433 3457899999999997654 333433 34555 48899984 46899999999
Q ss_pred eccccccCCcccCCceeeeccHHHHHHHHHHHHHHh
Q psy2951 868 GGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNM 903 (1466)
Q Consensus 868 ~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i 903 (1466)
+|||+..+.. .+..|..+|..||.++
T Consensus 158 aGDv~~~~~~----------q~i~Aag~G~~AA~~a 183 (190)
T d1trba1 158 AGDVMDHIYR----------QAITSAGTGCMAALDA 183 (190)
T ss_dssp CGGGGCSSSC----------CHHHHHHHHHHHHHHH
T ss_pred eEEecCccee----------EEEEEeccHHHHHHHH
Confidence 9999875532 2457889999999775
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.33 E-value=8.3e-13 Score=131.96 Aligned_cols=146 Identities=16% Similarity=0.045 Sum_probs=117.1
Q ss_pred ecCCCCCcC-CCCCCCC--cEEEecCHHHHHhhhcccCCCCeEEEE--cCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcc
Q psy2951 1169 ATGSSPRTI-SQADGVN--KVFYLRTVEDANNIAPHITPESNVVVI--GSSFIGMEAAAFCASKVKSVTVVGRGAVPFQE 1243 (1466)
Q Consensus 1169 AtG~~~~~~-~~~~g~~--~v~~~~~~~~~~~l~~~~~~~~~vvVv--G~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~ 1243 (1466)
|||+.|..+ |+| |++ +++++ +.+|+..++ ...+++++|+ |+|++|+|+|..|+++|++||++++.++++.
T Consensus 4 atG~~~~~~~pip-G~~~~~~~v~-t~~d~l~~~--~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~- 78 (156)
T d1djqa2 4 TDGTNCLTHDPIP-GADASLPDQL-TPEQVMDGK--KKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANY- 78 (156)
T ss_dssp SSCCCTTTSSCCT-TCCTTSTTEE-CHHHHHHTC--SCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTH-
T ss_pred CCCCCCCCCCCCC-CccCCCCEEE-CHHHHhcCc--cccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcccc-
Confidence 899998876 789 987 55566 678885544 3446777776 9999999999999999999999999998876
Q ss_pred cccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccCccccccCCceeeCCCeE
Q psy2951 1244 SLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAV 1323 (1466)
Q Consensus 1244 ~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~~G~i 1323 (1466)
.+.+.....+.+.++++||++++++++.+++ .+. +.+.+......+.++.++|..|+.......++++|. .+
T Consensus 79 ~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~-~~~-----v~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~le~D~--vi 150 (156)
T d1djqa2 79 MHFTLEYPNMMRRLHELHVEELGDHFCSRIE-PGR-----MEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDS--LV 150 (156)
T ss_dssp HHHTTCHHHHHHHHHHTTCEEEETEEEEEEE-TTE-----EEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSE--EE
T ss_pred ccchhHHHHHHHHHhhccceEEeccEEEEec-Ccc-----eEEEeeeccccceeeeeeEEEecccCCccCcEecce--EE
Confidence 4566677788899999999999999999998 322 455555556788899999999999988887777663 46
Q ss_pred EeCC
Q psy2951 1324 VVNE 1327 (1466)
Q Consensus 1324 ~vd~ 1327 (1466)
+++.
T Consensus 151 lvtg 154 (156)
T d1djqa2 151 LVTG 154 (156)
T ss_dssp EESC
T ss_pred EEec
Confidence 6654
|
| >d2e74d1 b.33.1.1 (D:46-179) ISP subunit from the cytochrome b6f complex, soluble domain {Mastigocladus laminosus [TaxId: 83541]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Rieske iron-sulfur protein (ISP) domain: ISP subunit from the cytochrome b6f complex, soluble domain species: Mastigocladus laminosus [TaxId: 83541]
Probab=99.32 E-value=3.2e-13 Score=127.60 Aligned_cols=69 Identities=25% Similarity=0.475 Sum_probs=60.9
Q ss_pred eeCCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCeEEEEE
Q psy2951 502 STTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQ 572 (1466)
Q Consensus 502 ~~~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~~~~ 572 (1466)
+..+++||++++|||+|++|.+|..+ +.++||||+|+|++ +|++..+|+..+|++|+++++++.+++..
T Consensus 51 ~~~g~~~A~~~~C~H~G~~l~~g~~~-~~~~Cp~Hg~~Fd~-~G~~~~gPa~~~L~~y~v~v~~~~i~V~p 119 (134)
T d2e74d1 51 KEAIRDYGINAVCTHLGCVVPWNAAE-NKFKCPCHGSQYDE-TGKVIRGPAPLSLALCHATVQDDNIVLTP 119 (134)
T ss_dssp --CCCSEEEECBCTTTCCBCCBCTTT-SCEEETTTTEEECS-SSCBCSSSCCSCCCEEEEECCTTSCEEEE
T ss_pred CCCCcEEEEeccccCCEEEccccccC-CccCCCCCCcEECC-CCCEEeCCCCCCcceeeEEEECCEEEEeC
Confidence 45789999999999999999998754 48899999999998 79999999999999999999888887744
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.31 E-value=3.3e-12 Score=120.21 Aligned_cols=107 Identities=21% Similarity=0.361 Sum_probs=84.5
Q ss_pred CHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceE
Q psy2951 720 TVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANV 799 (1466)
Q Consensus 720 ~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v 799 (1466)
+.+++..+. ..+++++|||+|++|+|+|..|+++|.+|||+.++ ..+ +.+++++.+.+.+.|+++||+|++++.+
T Consensus 9 tsd~~~~l~---~~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~-~~l-~~~D~~~~~~l~~~l~~~Gv~i~~~~~v 83 (122)
T d1h6va2 9 SSDDLFSLP---YCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILL-RGFDQDMANKIGEHMEEHGIKFIRQFVP 83 (122)
T ss_dssp CHHHHTTCS---SCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-SSS-TTSCHHHHHHHHHHHHHTTEEEEESCEE
T ss_pred cchHHhCcc---cCCCeEEEECCCccHHHHHHHHhhcCCeEEEEEec-hhh-ccCCHHHHHHHHHHHHHCCCEEEECCEE
Confidence 555554433 35899999999999999999999999999999875 444 7899999999999999999999999999
Q ss_pred EEEEecCCC--ceEEEECC--CC-c--EEecCEEEEccc
Q psy2951 800 SSFEKNEKN--DVTAANLD--NG-T--TIPADLVIVGIG 831 (1466)
Q Consensus 800 ~~i~~~~~~--~~~~v~~~--~g-~--~i~~D~vi~a~G 831 (1466)
++++..+++ ....+.+. ++ + .+++|.|++|+|
T Consensus 84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG 122 (122)
T d1h6va2 84 TKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG 122 (122)
T ss_dssp EEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred EEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence 998753322 22233332 22 2 467999999998
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=99.31 E-value=2e-14 Score=144.35 Aligned_cols=121 Identities=19% Similarity=0.259 Sum_probs=87.0
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCCCchhhc--cCcccccccChhhhccCCcEEEcCCe
Q psy2951 1064 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQLD--IKADSILLRTEEFYKDNDIHVIKGKK 1141 (1466)
Q Consensus 1064 ~~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~ 1141 (1466)
...++|+|||||||||+||..|+++|+ +|+|||+++.++.... +..... ....++.....+.+++.+|+++++++
T Consensus 41 ~~~k~V~IIGaGPAGL~AA~~la~~G~--~Vtl~E~~~~~GG~l~-~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~~ 117 (179)
T d1ps9a3 41 VQKKNLAVVGAGPAGLAFAINAAARGH--QVTLFDAHSEIGGQFN-IAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHT 117 (179)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHTTTC--EEEEEESSSSSCTTHH-HHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCC
T ss_pred CCCcEEEEECccHHHHHHHHHHHhhcc--ceEEEeccCccCceEE-EEEeCcccchHHHHHHHHHHhhhcCCeEEEeCCE
Confidence 446899999999999999999999999 9999999988775321 111111 11122222333456667999999985
Q ss_pred EEEeecCCCCeEEecCCcEEecCeEEEecCCCCCcCCCCCCCCcEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHH
Q psy2951 1142 IISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVNKVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEA 1220 (1466)
Q Consensus 1142 v~~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~ 1220 (1466)
|+.- ....||++|+|||+.|+.+++| |. ..+++++|+|+|.+++++
T Consensus 118 Vt~~-------------~~~~~d~vilAtG~~~~~~~~p-g~-------------------~~g~~v~vigggd~a~~~ 163 (179)
T d1ps9a3 118 VTAD-------------QLQAFDETILASGIPNRALAQP-LI-------------------DSGKTVHLIGGCDVAMEL 163 (179)
T ss_dssp CCSS-------------SSCCSSEEEECCCEECCTTHHH-HH-------------------TTTCCEEECGGGTCCSSC
T ss_pred Eccc-------------ccccceeEEEeecCCCcccccc-hh-------------------ccCCEEEEECCcHhhhhc
Confidence 5321 1347999999999988877666 32 138899999999888875
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=99.28 E-value=1e-11 Score=128.87 Aligned_cols=155 Identities=19% Similarity=0.271 Sum_probs=114.1
Q ss_pred CCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCccc---------------ccccCHHHHHHHHHHHHhCCcEEEcCce
Q psy2951 182 ESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF---------------QESLGKEVGERITKLFESKGVKFVMKAN 246 (1466)
Q Consensus 182 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~---------------~~~~~~~~~~~l~~~l~~~GV~i~~~~~ 246 (1466)
.++|+|||||++|++.|..+++.|.+|+++++.+... ....+.++.+.+...+.+.++.+..+ .
T Consensus 5 ~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 83 (190)
T d1trba1 5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD-H 83 (190)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECC-C
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccccccchhhhhhccccccchHHHHHHHHHHHHhcCcEEecc-e
Confidence 4689999999999999999999999999998753210 01223667777888888899998865 5
Q ss_pred EEEEEecCCCCeEEEEcCCCcEEeccEEEEeeccccC-----ccccccCCceecCCccEEECC-----CCCcCCCCEEEe
Q psy2951 247 VSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLN-----TNYLDGKGVELNGQKAVVVNE-----YLETNVPGVYAG 316 (1466)
Q Consensus 247 v~~i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~-----~~~l~~~gl~~~~~g~i~vd~-----~~~t~~~~iya~ 316 (1466)
|+++...++ ...+.. ....+.++.+++++|..|. ..+++. .++++ +|+|.+|+ .++|++|+||++
T Consensus 84 V~~~~~~~~--~~~v~~-~~~~~~~~~viva~G~~~~~~~~~~~~~~~-~~e~~-~g~i~~~~~~~~~~~~T~v~gV~aa 158 (190)
T d1trba1 84 INKVDLQNR--PFRLNG-DNGEYTCDALIIATGASARYHSPNTAIFEG-QLELE-NGYIKVQSGIHGNATQTSIPGVFAA 158 (190)
T ss_dssp EEEEECSSS--SEEEEE-SSCEEEEEEEEECCCEEECCEEESCGGGTT-TSCEE-TTEECCCCSSSSCTTBCSSTTEEEC
T ss_pred eEEEecCCC--cEEEEE-eeeeEeeeeeeeecceeeeeecccceeecc-eEecC-CcEEEEecCCcccccccccCeEEEe
Confidence 777776542 233443 3567899999999997654 333332 24555 48899984 458999999999
Q ss_pred cccccccCccCCCCcceeccHHHHHHHHHHHHHHhc
Q psy2951 317 GDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMV 352 (1466)
Q Consensus 317 GD~~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 352 (1466)
|||++.+ ..++..|+.+|..||.++.
T Consensus 159 GDv~~~~----------~~q~i~Aag~G~~AA~~a~ 184 (190)
T d1trba1 159 GDVMDHI----------YRQAITSAGTGCMAALDAE 184 (190)
T ss_dssp GGGGCSS----------SCCHHHHHHHHHHHHHHHH
T ss_pred EEecCcc----------eeEEEEEeccHHHHHHHHH
Confidence 9998654 2456778889999997653
|
| >d1g8kb_ b.33.1.1 (B:) Arsenite oxidase Rieske subunit {Alcaligenes faecalis [TaxId: 511]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Rieske iron-sulfur protein (ISP) domain: Arsenite oxidase Rieske subunit species: Alcaligenes faecalis [TaxId: 511]
Probab=99.28 E-value=4.3e-12 Score=118.76 Aligned_cols=68 Identities=21% Similarity=0.345 Sum_probs=59.4
Q ss_pred eCCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEEC-CCCeeecCCCCCCCCeEEEEEEcCeEEEE
Q psy2951 503 TTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNI-ATGDIEDFPGMDSLPCYKVTIQNDDSVVV 571 (1466)
Q Consensus 503 ~~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~-~~G~~~~~p~~~~l~~~~v~i~~~~~~~~ 571 (1466)
.+|+++|+++.|||+|++|.++. +++.+.||||+|+||+ ++|++..+|+..+|+.|+++++++..++.
T Consensus 49 ~~g~i~A~~~~CpH~g~~l~~~~-~~~~i~Cp~Hg~~Fd~~~~G~~~~gPa~~~L~~~~v~ve~~~~~I~ 117 (133)
T d1g8kb_ 49 PDDDIVAYSVLCTHMGCPTSYDS-SSKTFSCPCHFTEFDAEKAGQMICGEATADLPRVLLRYDAASDALT 117 (133)
T ss_dssp TTTCEEEEECBCTTTCCBCEEET-TTTEEECTTTCCEEEGGGTTEEEESSCSSCCCEEEEEEETTTTEEE
T ss_pred CCCEEEEEehhcCCCCcccccCc-ccCEEECCCCCeEEecCCCceEeCCCCCCCCCeEeEEEECCCCEEE
Confidence 36899999999999999998776 4559999999999998 58999999999999999999987654443
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.27 E-value=7.1e-12 Score=117.90 Aligned_cols=107 Identities=21% Similarity=0.351 Sum_probs=83.9
Q ss_pred CHHHHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEEcCceE
Q psy2951 168 TVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANV 247 (1466)
Q Consensus 168 ~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v 247 (1466)
+.+++..+.. .+++++|||||++|+|+|..|+++|.+||++++. ..+ +.+++++.+.+.+.|+++||++++++.|
T Consensus 9 tsd~~~~l~~---~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~-~~l-~~~D~~~~~~l~~~l~~~Gv~i~~~~~v 83 (122)
T d1h6va2 9 SSDDLFSLPY---CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILL-RGFDQDMANKIGEHMEEHGIKFIRQFVP 83 (122)
T ss_dssp CHHHHTTCSS---CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-SSS-TTSCHHHHHHHHHHHHHTTEEEEESCEE
T ss_pred cchHHhCccc---CCCeEEEECCCccHHHHHHHHhhcCCeEEEEEec-hhh-ccCCHHHHHHHHHHHHHCCCEEEECCEE
Confidence 5566655543 3579999999999999999999999999999875 444 6889999999999999999999999999
Q ss_pred EEEEecCCC--CeEEEEc--CC-C--cEEeccEEEEeec
Q psy2951 248 SSFEKNEKN--DVTAANL--DN-G--TTIPADLVIVGIG 279 (1466)
Q Consensus 248 ~~i~~~~~~--~~~~v~~--~~-g--~~i~~D~Vi~a~G 279 (1466)
++++..+++ ....+.. .+ + ..+++|.|++|+|
T Consensus 84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG 122 (122)
T d1h6va2 84 TKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG 122 (122)
T ss_dssp EEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred EEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence 999754322 1122222 22 2 2467999999998
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.27 E-value=2.4e-12 Score=128.52 Aligned_cols=139 Identities=15% Similarity=0.026 Sum_probs=107.3
Q ss_pred cCCCCCCcC-CCCCCCC--cEEEecCHHHHHhhcccCCCCCcEEEE--CCChHHHHHHHHHhccCCeEEEEeecCccCcc
Q psy2951 698 ATGSSPRTI-SQADGVN--KVFYLRTVEDANNIAPHITPESNVVVI--GSSFIGMEAAAFCASKVKSVTVVGRGAVPFQE 772 (1466)
Q Consensus 698 AtG~~~~~~-~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~vvVv--G~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~ 772 (1466)
|||+.|..| ++| |.+ ..+.+ +.+++..... ..+++++|+ |||++|+|+|..|+++|++||++++.+.++ +
T Consensus 4 atG~~~~~~~pip-G~~~~~~~v~-t~~d~l~~~~--~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~-~ 78 (156)
T d1djqa2 4 TDGTNCLTHDPIP-GADASLPDQL-TPEQVMDGKK--KIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLAN-Y 78 (156)
T ss_dssp SSCCCTTTSSCCT-TCCTTSTTEE-CHHHHHHTCS--CCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTT-H
T ss_pred CCCCCCCCCCCCC-CccCCCCEEE-CHHHHhcCcc--ccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccc-c
Confidence 899999887 788 887 23333 7777755443 346777776 999999999999999999999999998776 4
Q ss_pred ccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCccccccCCceee
Q psy2951 773 SLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELN 847 (1466)
Q Consensus 773 ~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~ 847 (1466)
.++......+.+.|.++||++++++++.+|+.. .+.+.+......+.++.++|..|+....+..++++|
T Consensus 79 ~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~------~v~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~le~D 147 (156)
T d1djqa2 79 MHFTLEYPNMMRRLHELHVEELGDHFCSRIEPG------RMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFD 147 (156)
T ss_dssp HHHTTCHHHHHHHHHHTTCEEEETEEEEEEETT------EEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECS
T ss_pred ccchhHHHHHHHHHhhccceEEeccEEEEecCc------ceEEEeeeccccceeeeeeEEEecccCCccCcEecc
Confidence 567777788999999999999999999999832 233333334456778888888888877777666654
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.26 E-value=2.1e-11 Score=131.68 Aligned_cols=156 Identities=20% Similarity=0.254 Sum_probs=106.4
Q ss_pred cEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccc----------c--CHHHH------------------------
Q psy2951 736 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQES----------L--GKEVG------------------------ 779 (1466)
Q Consensus 736 ~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~----------~--~~~~~------------------------ 779 (1466)
.|+|||+|+.|+.+|..+++.|.+|+|+++.+.....- + ..+..
T Consensus 7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~~ 86 (233)
T d1v59a1 7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKINVAN 86 (233)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEEECHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCcceEeEEeeccccccccccchhHHHhhhhHhhcCeeEeeceecchhh
Confidence 68999999999999999999999999999775421100 0 00001
Q ss_pred -------------HHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCC--------cEEecCEEEE--------cc
Q psy2951 780 -------------ERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG--------TTIPADLVIV--------GI 830 (1466)
Q Consensus 780 -------------~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g--------~~i~~D~vi~--------a~ 830 (1466)
.......++.+|+++.+.- ++. +.+...+....+ ..++++.+++ ++
T Consensus 87 ~~~~~~~~i~~~~~~~~~l~~~~~v~~~~G~a--~f~---~~~~~~v~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~ 161 (233)
T d1v59a1 87 FQKAKDDAVKQLTGGIELLFKKNKVTYYKGNG--SFE---DETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFV 161 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCEEEESEE--EES---SSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEEECCCS
T ss_pred hhheeeeEEEEeecceeeeeccCCeEEEEEEE--EEe---cCCCcEEEecccccceeeeeeeccCCeEEEecccccceec
Confidence 1112233344555544321 121 111122222221 1334444444 89
Q ss_pred ccccCcc--ccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCC
Q psy2951 831 GTVLNTN--YLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK 907 (1466)
Q Consensus 831 G~~p~~~--~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~ 907 (1466)
|++|+++ .++..|+++++.|+|.||++++|+.|+|||+||+...+... +.|..+|+.||++|++..
T Consensus 162 G~~p~~~~l~l~~~gv~~~~~g~i~vd~~~~T~~~~v~A~GD~~~g~~l~-----------~~a~~~G~~aa~~i~~~~ 229 (233)
T d1v59a1 162 GRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGPMLA-----------HKAEEEGIAAVEMLKTGH 229 (233)
T ss_dssp CEEECCTTSCTTTTTCCBCTTSCBCCCTTSBCSSTTEEECGGGSSSCCCH-----------HHHHHHHHHHHHHHHHSC
T ss_pred ccccCCCCcCchhcCeEEcCCCcEEECCeEecCCCCEEEEcCCcccHHHH-----------HHHHHHHHHHHHHHccCC
Confidence 9999987 35888999999999999999999999999999998776543 689999999999998764
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.24 E-value=3.5e-11 Score=129.82 Aligned_cols=157 Identities=20% Similarity=0.273 Sum_probs=112.1
Q ss_pred eEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcc---------------------------ccc-------------
Q psy2951 1207 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQE---------------------------SLG------------- 1246 (1466)
Q Consensus 1207 ~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~---------------------------~~~------------- 1246 (1466)
.|+|||+|+.|+.+|..+++.|.+|.++++.+..-.. .++
T Consensus 7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~~ 86 (233)
T d1v59a1 7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKINVAN 86 (233)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEEECHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCcceEeEEeeccccccccccchhHHHhhhhHhhcCeeEeeceecchhh
Confidence 6999999999999999999999999999976542100 000
Q ss_pred ---------HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCC--------CeeecCEEEE--------ee
Q psy2951 1247 ---------KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG--------TTIPADLVIV--------GI 1301 (1466)
Q Consensus 1247 ---------~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g--------~~i~~D~vv~--------a~ 1301 (1466)
..+......+.+..+|+++.+.. ++. +. ....|...++ ..++++.+++ ++
T Consensus 87 ~~~~~~~~i~~~~~~~~~l~~~~~v~~~~G~a--~f~--~~-~~~~v~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~ 161 (233)
T d1v59a1 87 FQKAKDDAVKQLTGGIELLFKKNKVTYYKGNG--SFE--DE-TKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFV 161 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCEEEESEE--EES--SS-SEEEEECCTTCTTCCSSCEEEEEEEEEECCCEEECCCS
T ss_pred hhheeeeEEEEeecceeeeeccCCeEEEEEEE--EEe--cC-CCcEEEecccccceeeeeeeccCCeEEEecccccceec
Confidence 11222334455666777765421 222 11 2223333332 1234444444 88
Q ss_pred ccccCcc--ccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCCCC
Q psy2951 1302 GTVLNTN--YLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKKT 1379 (1466)
Q Consensus 1302 G~~p~~~--~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~~ 1379 (1466)
|..|+++ .++..|++++.+|+|.||++++|+.|+|||+||+...|... +.|..+|+.||++|++...
T Consensus 162 G~~p~~~~l~l~~~gv~~~~~g~i~vd~~~~T~~~~v~A~GD~~~g~~l~-----------~~a~~~G~~aa~~i~~~~~ 230 (233)
T d1v59a1 162 GRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGPMLA-----------HKAEEEGIAAVEMLKTGHG 230 (233)
T ss_dssp CEEECCTTSCTTTTTCCBCTTSCBCCCTTSBCSSTTEEECGGGSSSCCCH-----------HHHHHHHHHHHHHHHHSCC
T ss_pred ccccCCCCcCchhcCeEEcCCCcEEECCeEecCCCCEEEEcCCcccHHHH-----------HHHHHHHHHHHHHHccCCC
Confidence 9999988 46788999999999999999999999999999999887654 6799999999999997653
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=7.4e-11 Score=121.79 Aligned_cols=159 Identities=22% Similarity=0.301 Sum_probs=123.4
Q ss_pred cEEEECCChHHHHHHHHHhccCCeEEEEeecCc--c-----------CccccCHHHHHHHHHHHHhcCcEEEccceEEEE
Q psy2951 736 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAV--P-----------FQESLGKEVGERITKLFESKGVKFVMKANVSSF 802 (1466)
Q Consensus 736 ~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~--~-----------~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i 802 (1466)
.|+|||||++|+++|..++++|.+|++++++.. . ......+.....+....++.+++......+..+
T Consensus 3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T d1fl2a1 3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL 82 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred cEEEECcCHHHHHHHHHHHHcCCeEEEEEEecCCcccccccceeccccchhhhHHHHHHHHHHhhheeceeeccceeeee
Confidence 589999999999999999999999999987531 0 011123666677777788889999988888887
Q ss_pred EecCC-CceEEEECCCCcEEecCEEEEccccccCccccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCC
Q psy2951 803 EKNEK-NDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYN 881 (1466)
Q Consensus 803 ~~~~~-~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~ 881 (1466)
..... .........+..++.++.+++++|..++.......++.....|.+.+|..++|+.|+||++|||...+...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~i~v~~~~~t~~~gv~a~gd~~~~~~~~--- 159 (184)
T d1fl2a1 83 IPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLEGAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYKQ--- 159 (184)
T ss_dssp ECCSSTTCCEEEEETTSCEEEEEEEEECCCEEEESCGGGTTTSCBCTTSCBCCCTTCBCSSTTEEECSTTBSCSSCC---
T ss_pred cccccccceeeeeeecceeeecccccccccccccccccccccccccccceeccCCceeeeCCCEEEEeeecCcccCC---
Confidence 64332 23344555667789999999999988776666666777888899999999999999999999998876432
Q ss_pred ceeeeccHHHHHHHHHHHHHHhc
Q psy2951 882 KNASIGHYQLAQYHGRIAALNMV 904 (1466)
Q Consensus 882 ~~~~~~~~~~A~~~g~~aA~~i~ 904 (1466)
...|..+|..||..+.
T Consensus 160 -------~vva~g~G~~aA~~~~ 175 (184)
T d1fl2a1 160 -------IIIATGEGAKASLSAF 175 (184)
T ss_dssp -------HHHHHHHHHHHHHHHH
T ss_pred -------cEEEEECcHHHHHHHH
Confidence 3578888888887764
|
| >d1vm9a_ b.33.1.1 (A:) Toluene-4-monooxygenase system protein C, TmoC {Pseudomonas mendocina [TaxId: 300]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Rieske iron-sulfur protein (ISP) domain: Toluene-4-monooxygenase system protein C, TmoC species: Pseudomonas mendocina [TaxId: 300]
Probab=99.22 E-value=3.3e-12 Score=117.48 Aligned_cols=73 Identities=27% Similarity=0.399 Sum_probs=64.7
Q ss_pred hhhhhhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEEEcc
Q psy2951 971 AQFAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQAR 1045 (1466)
Q Consensus 971 ~~~~~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~~~~ 1045 (1466)
++..+|+++|+.+.|||.+.+|..|.+.++.+.||||+|.|++++|++.. |...+|+.|++++ +++.++++..
T Consensus 30 ~r~~~g~~~A~~~~CpH~g~~l~~g~~~~~~i~Cp~Hg~~F~l~~G~~~~-p~~~~L~~~~v~v-~~g~v~V~~~ 102 (109)
T d1vm9a_ 30 VNSEEHGVKAYQAMCPHQEILLSEGSYEGGVITCRAHLWTFNDGTGHGIN-PDDAALAEYPVEV-KGDDIYVSTK 102 (109)
T ss_dssp EEETTTEEEEEESBCSSSSCBGGGSEEETTEEECTTTCCEEETTTCBBSS-SSSCBCCEECEEE-ETTEEEECCT
T ss_pred EEeCCCeEEEEEeeCCCCCccceeEeccCCEEEcccCCceEECCCccCCC-CCCCCccEEeEEE-ECCEEEEEeC
Confidence 34457889999999999999999999999999999999999999999987 4556899999999 7888888653
|
| >d3c0da1 b.33.1.3 (A:4-111) NADH-nitrite reductase small subunit NirD {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: NirD-like domain: NADH-nitrite reductase small subunit NirD species: Vibrio parahaemolyticus [TaxId: 670]
Probab=99.22 E-value=1.3e-12 Score=119.92 Aligned_cols=75 Identities=20% Similarity=0.253 Sum_probs=61.4
Q ss_pred hhhhhhhhhhhhhcCCCCCCCccccce-eec----CCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEEE
Q psy2951 969 LAAQFAERNIYAVGTKCSHYGAPLVKG-SLG----DGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQ 1043 (1466)
Q Consensus 969 ~~~~~~~g~~~a~~~~C~h~g~~l~~g-~~~----~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~~ 1043 (1466)
.+++..+|+++|+++.|||.+++|..+ .+. +..+.||||+|.||++||++...|.. +|++|++++ +++.+++.
T Consensus 28 ~v~r~~~g~~~A~~~~CpH~g~~L~~~g~~~~~~~~~~i~Cp~Hg~~Fdl~tG~~~~~p~~-~l~~y~v~v-~~g~V~V~ 105 (108)
T d3c0da1 28 ALFYIPDSGVYAVQDWDPIGKAYVMSRGIVGDINGEMCVASPLYKQHFSLKSGQCLEDEAH-CLKTWRVTV-DDNQVCYL 105 (108)
T ss_dssp EEEEETTTEEEEEESEETTTTEECGGGSEEEESSSSEEEECTTTCCEEETTTCBBSSCTTC-BCCEECEEE-SSSEEEEE
T ss_pred EEEEeCCCCEEEEEccCCCCCcccccccEEEecCCceEEeccccccEEeccCCccccCCCC-cccEEeEEE-ECCEEEEE
Confidence 344555789999999999999997664 332 23599999999999999999998775 699999999 88888886
Q ss_pred cc
Q psy2951 1044 AR 1045 (1466)
Q Consensus 1044 ~~ 1045 (1466)
.+
T Consensus 106 ~~ 107 (108)
T d3c0da1 106 AK 107 (108)
T ss_dssp CC
T ss_pred ec
Confidence 53
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=8.9e-11 Score=121.19 Aligned_cols=159 Identities=22% Similarity=0.303 Sum_probs=122.8
Q ss_pred cEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcc-------------cccccCHHHHHHHHHHHHhCCcEEEcCceEEEE
Q psy2951 184 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP-------------FQESLGKEVGERITKLFESKGVKFVMKANVSSF 250 (1466)
Q Consensus 184 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~-------------~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i 250 (1466)
.|+|||||++|+++|..+++.|.+|+++++.... +.....+.+...+....++.+++......+..+
T Consensus 3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T d1fl2a1 3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL 82 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred cEEEECcCHHHHHHHHHHHHcCCeEEEEEEecCCcccccccceeccccchhhhHHHHHHHHHHhhheeceeeccceeeee
Confidence 6999999999999999999999999999864210 011123667777777888889999988888877
Q ss_pred EecCCC-CeEEEEcCCCcEEeccEEEEeeccccCccccccCCceecCCccEEECCCCCcCCCCEEEecccccccCccCCC
Q psy2951 251 EKNEKN-DVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYN 329 (1466)
Q Consensus 251 ~~~~~~-~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~g 329 (1466)
...... ........+..++.++.++.++|..++.......++.....|.|.+|+.++|+.|+||++|||...+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~i~v~~~~~t~~~gv~a~gd~~~~~~----- 157 (184)
T d1fl2a1 83 IPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLEGAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPY----- 157 (184)
T ss_dssp ECCSSTTCCEEEEETTSCEEEEEEEEECCCEEEESCGGGTTTSCBCTTSCBCCCTTCBCSSTTEEECSTTBSCSS-----
T ss_pred cccccccceeeeeeecceeeecccccccccccccccccccccccccccceeccCCceeeeCCCEEEEeeecCccc-----
Confidence 654322 33445556677899999999999877766666666777778999999999999999999999987542
Q ss_pred CcceeccHHHHHHHHHHHHHHhc
Q psy2951 330 KNASIGHYQLAQYHGRIAALNMV 352 (1466)
Q Consensus 330 ~~~~~~~~~~A~~~g~~aa~~i~ 352 (1466)
.....|..+|..+|.++.
T Consensus 158 -----~~~vva~g~G~~aA~~~~ 175 (184)
T d1fl2a1 158 -----KQIIIATGEGAKASLSAF 175 (184)
T ss_dssp -----CCHHHHHHHHHHHHHHHH
T ss_pred -----CCcEEEEECcHHHHHHHH
Confidence 234568888888887764
|
| >d1fqta_ b.33.1.1 (A:) Rieske-type ferredoxin associated with biphenyl dioxygenase {Burkholderia cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Rieske iron-sulfur protein (ISP) domain: Rieske-type ferredoxin associated with biphenyl dioxygenase species: Burkholderia cepacia [TaxId: 292]
Probab=99.20 E-value=3.6e-12 Score=117.11 Aligned_cols=71 Identities=25% Similarity=0.509 Sum_probs=64.1
Q ss_pred hhhhhhhhcCCCCCCCccccce-eecCCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEEEcc
Q psy2951 974 AERNIYAVGTKCSHYGAPLVKG-SLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQAR 1045 (1466)
Q Consensus 974 ~~g~~~a~~~~C~h~g~~l~~g-~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~~~~ 1045 (1466)
.++++||+.+.|||.+++|..| .+.++.+.||||+|.|++.||++...|+..+|++|++++ +++.++++..
T Consensus 32 ~~~~~~A~~~~CpH~g~~l~~g~~~~~~~i~Cp~H~~~F~l~tG~~~~~p~~~~l~~~~v~~-~~g~i~v~~~ 103 (109)
T d1fqta_ 32 VDGELFATQDRCTHGDWSLSDGGYLEGDVVECSLHMGKFCVRTGKVKSPPPCEALKIFPIRI-EDNDVLVDFE 103 (109)
T ss_dssp ETTEEEEEESBCTTSSCBSSTTCCEETTEEECTTTCCEEETTTCCEEESSCCSCCCBCCEEE-ETTEEEECTT
T ss_pred ECCEEEEEEeeccccCcccccceeecCCEEEccccCCEEECCCccCccCCCCCCCCEEeEEE-ECCEEEEEeC
Confidence 3678999999999999999876 567889999999999999999999999999999999999 6788888653
|
| >d1nyka_ b.33.1.1 (A:) Soluble Rieske protein {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Rieske iron-sulfur protein (ISP) domain: Soluble Rieske protein species: Thermus thermophilus [TaxId: 274]
Probab=99.18 E-value=7.6e-12 Score=121.67 Aligned_cols=69 Identities=17% Similarity=0.383 Sum_probs=61.9
Q ss_pred eCCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCC-CeeecCCCCCCCCeEEEEEEcCeEEEE
Q psy2951 503 TTSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIAT-GDIEDFPGMDSLPCYKVTIQNDDSVVV 571 (1466)
Q Consensus 503 ~~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~-G~~~~~p~~~~l~~~~v~i~~~~~~~~ 571 (1466)
..+.++|+++.|||+||+|+.+...++.|.||||+|+||+++ |++..+|+..+|..|+++++++.+|+.
T Consensus 76 ~~d~i~A~~~~CtH~g~~l~~~~~~~~~~~Cp~Hgs~FD~~~gg~v~~gPa~~~L~~~~~~~~~g~i~v~ 145 (156)
T d1nyka_ 76 AAEGVVAYSAVCTHLGCIVSQWVADEEAALCPCHGGVYDLRHGAQVIAGPPPRPVPQLPVRVEDGVLVAA 145 (156)
T ss_dssp CBTTEEEEECBCTTTCCBCCEEEGGGTEEECTTTCCEEEGGGTTEEEESSCSSCCCEECEEEETTEEEEC
T ss_pred cCCcEEEEcccCcccccccccccccCCeeeccccceEEecCCCceEeCCCCCCCCCEEEEEEECCEEEEe
Confidence 355699999999999999999988888999999999999864 899999999999999999988877754
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.16 E-value=1.1e-10 Score=126.21 Aligned_cols=78 Identities=24% Similarity=0.369 Sum_probs=68.4
Q ss_pred CeeecCEEEEeeccccCcc----------ccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeec
Q psy2951 1290 TTIPADLVIVGIGTVLNTN----------YLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGH 1359 (1466)
Q Consensus 1290 ~~i~~D~vv~a~G~~p~~~----------~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~ 1359 (1466)
+.+++|.|++++|..|... .|+..|+.++.+|+|.||+++|||.|+|||+|||+..+...
T Consensus 148 e~i~~~~i~ia~G~~p~~~~~~~~~~~~l~l~~~gv~~~~~G~I~vd~~~~Ts~~~iyA~GDv~~~~~~~---------- 217 (240)
T d1feca1 148 ETLDTEYILLATGSWPQHLGIEVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRVMLT---------- 217 (240)
T ss_dssp EEEEEEEEEECCCEEECCCCSBEESCTTSCGGGGTCCBCTTSCBCCCTTCBCSSTTEEECGGGGCSCCCH----------
T ss_pred EEEecceEEEecCCceeEccccccccCCCCccccCeEECCCCcEEcCcccCcCCCCEEEEEECCCCccch----------
Confidence 4689999999999988754 25678899999999999999999999999999998877654
Q ss_pred HHHHHHHHHHHHHHhcCCC
Q psy2951 1360 YQLAQYHGRIAALNMVEKK 1378 (1466)
Q Consensus 1360 ~~~A~~qa~~aa~~i~g~~ 1378 (1466)
+.|..||+.||++++|..
T Consensus 218 -~~A~~eg~~aa~~~~~~~ 235 (240)
T d1feca1 218 -PVAINEGAAFVDTVFANK 235 (240)
T ss_dssp -HHHHHHHHHHHHHHHSSC
T ss_pred -hhHHHHHHHHHHHHhCCC
Confidence 679999999999999854
|
| >d2jo6a1 b.33.1.3 (A:1-108) NADH-nitrite reductase small subunit NirD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: NirD-like domain: NADH-nitrite reductase small subunit NirD species: Escherichia coli [TaxId: 562]
Probab=99.15 E-value=8e-12 Score=114.49 Aligned_cols=68 Identities=16% Similarity=0.321 Sum_probs=58.1
Q ss_pred hhhhhhhhcCCCCCCCcc-ccceeec----CCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEEE
Q psy2951 974 AERNIYAVGTKCSHYGAP-LVKGSLG----DGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQ 1043 (1466)
Q Consensus 974 ~~g~~~a~~~~C~h~g~~-l~~g~~~----~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~~ 1043 (1466)
.+|+++|+.+.|||.+++ |..|.+. +..+.||||+|+|+++||++.+.|.. +|++|++++ +++.++++
T Consensus 35 ~~g~v~A~~~~CpH~g~~ll~~G~~~~~~~~~~i~Cp~Hg~~F~l~tG~~~~~p~~-~l~~y~v~v-~~g~V~V~ 107 (108)
T d2jo6a1 35 HSDQVFAISNIDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLSDGLCMEDEQF-SVKHYEARV-KDGVVQLR 107 (108)
T ss_dssp SSSCCEEEESSCSSSCCSCSTTSEEEEETTEEEEEETTTTEEEETTTTEETTTTTT-CCCEEEEEE-ETTEEEEE
T ss_pred cCCEEEEEECcCCCCCCccccceeEeccccCCEEECCCCCceEECCCccCCCCCCC-cccEEeEEE-ECCEEEEe
Confidence 367899999999999998 6667664 23699999999999999999998875 799999999 78888874
|
| >d2jzaa1 b.33.1.3 (A:1-122) NADH-nitrite reductase small subunit NirD {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: NirD-like domain: NADH-nitrite reductase small subunit NirD species: Erwinia carotovora [TaxId: 554]
Probab=99.13 E-value=1.2e-11 Score=116.00 Aligned_cols=72 Identities=18% Similarity=0.290 Sum_probs=61.8
Q ss_pred hhhhhhhhcCCCCCCCcc-ccceeec----CCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEEEcchh
Q psy2951 974 AERNIYAVGTKCSHYGAP-LVKGSLG----DGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQARKD 1047 (1466)
Q Consensus 974 ~~g~~~a~~~~C~h~g~~-l~~g~~~----~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~~~~~~ 1047 (1466)
.+|+++|+.+.|||.+++ |..|.+. +..+.||||+|+|+++||++...|+. +|++|++++ +++.+++..+..
T Consensus 35 ~~g~v~A~~~~CpH~g~~ll~~G~v~~~~~~~~i~Cp~Hg~~F~l~tG~~~~~p~~-~l~~~~v~v-~~g~V~v~~~~~ 111 (122)
T d2jzaa1 35 NDEQVYAISNIDPFAQASVLSRGIVAEHQDDLWVASPLKKQHFRLYDGFCLEDGAY-SVAAYDTQV-TNGNVQISIADS 111 (122)
T ss_dssp SSSCCEEEBCCCTTTSSGGGTSSEEEESSSSEEEECSSSCCEEETTTCCBSSCCSS-CCBCCCEEE-SSSEEEEECCCC
T ss_pred CCCEEEEEecCCCcccccccccceeeeccCCCEEECCCCCCeeecccceeeecccc-CCCccceEE-ECCEEEEEeCCc
Confidence 368999999999999998 6667763 45699999999999999999998874 699999998 899999976533
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.10 E-value=2.9e-10 Score=120.77 Aligned_cols=153 Identities=20% Similarity=0.259 Sum_probs=112.0
Q ss_pred cEEEECCChHHHHHHHHHhccCCeEEEEeecCcc--------------------------Ccc---------ccC-----
Q psy2951 736 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP--------------------------FQE---------SLG----- 775 (1466)
Q Consensus 736 ~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~--------------------------~~~---------~~~----- 775 (1466)
.|+|||+|+.|+++|..++++|.+|+|++++..- ... .++
T Consensus 4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 83 (217)
T d1gesa1 4 DYIAIGGGSGGIASINRAAMYGQKCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWETLI 83 (217)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEeccCcCCeEecccccccccchhhHHHHHHHHhhhhhcCccCCcccccHHHHH
Confidence 4899999999999999999999999999875310 000 000
Q ss_pred -------HHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCcc--------ccc
Q psy2951 776 -------KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTN--------YLD 840 (1466)
Q Consensus 776 -------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~--------~~~ 840 (1466)
......++..+++.||+++......... .....++..+.++.+++|+|.+|... .++
T Consensus 84 ~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~~--------~~~~~~~~~~~~~~~iiatG~~p~ip~ip~~~~l~l~ 155 (217)
T d1gesa1 84 ASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDA--------KTLEVNGETITADHILIATGGRPSHPREPANDNINLE 155 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEET--------TEEEETTEEEEEEEEEECCCEEECCCEEESCTTSCHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCeEEEEeeeccccee--------eeecCCCceeeeeeeeeecCccccCCCCCCcCCcccc
Confidence 0112233445677888887665433222 01223567899999999999876532 134
Q ss_pred cCCceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhccCC
Q psy2951 841 GKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK 907 (1466)
Q Consensus 841 ~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~~~ 907 (1466)
..++.++++|++.+|+.++|+.|+||++||+..... .++.+.++|+.++.++++..
T Consensus 156 ~~gv~~~~~~~i~~d~~~~t~~~~i~~iG~g~~g~e-----------la~~~~~~G~~v~~~~~~~~ 211 (217)
T d1gesa1 156 AAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAVE-----------LTPVAVAAGRRLSERLFNNK 211 (217)
T ss_dssp HHTCCBCTTSCBCCCTTSBCSSTTEEECSGGGTSCC-----------CHHHHHHHHHHHHHHHHTTC
T ss_pred cccEEEcCCccEeeCchhccCCCcEEEECCCccHHH-----------HHHHHHHHHHHHHHHHhCCC
Confidence 457888999999999999999999999999987654 44789999999999998765
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.05 E-value=5.2e-10 Score=118.72 Aligned_cols=153 Identities=22% Similarity=0.284 Sum_probs=113.9
Q ss_pred eEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcC--------------------------Cccccc--------------
Q psy2951 1207 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP--------------------------FQESLG-------------- 1246 (1466)
Q Consensus 1207 ~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~--------------------------~~~~~~-------------- 1246 (1466)
.|+|||+|+.|+++|..+++.|.+|++++++..- .....+
T Consensus 4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 83 (217)
T d1gesa1 4 DYIAIGGGSGGIASINRAAMYGQKCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWETLI 83 (217)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEeccCcCCeEecccccccccchhhHHHHHHHHhhhhhcCccCCcccccHHHHH
Confidence 5899999999999999999999999999986410 000000
Q ss_pred -------HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccCcc--------ccc
Q psy2951 1247 -------KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTN--------YLD 1311 (1466)
Q Consensus 1247 -------~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~~~--------~~~ 1311 (1466)
..+...+...++++||++.......... . ....++..+.++.+++|+|..|..+ -+.
T Consensus 84 ~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~~---~-----~~~~~~~~~~~~~~iiatG~~p~ip~ip~~~~l~l~ 155 (217)
T d1gesa1 84 ASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDA---K-----TLEVNGETITADHILIATGGRPSHPREPANDNINLE 155 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEET---T-----EEEETTEEEEEEEEEECCCEEECCCEEESCTTSCHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCeEEEEeeeccccee---e-----eecCCCceeeeeeeeeecCccccCCCCCCcCCcccc
Confidence 1122334556778899887665443321 1 2234677899999999999887644 234
Q ss_pred cCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcCCC
Q psy2951 1312 GKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVEKK 1378 (1466)
Q Consensus 1312 ~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g~~ 1378 (1466)
..|+.++.+|++.+|+.++|+.|+||++||+....... +.+..+|+.++.+++++.
T Consensus 156 ~~gv~~~~~~~i~~d~~~~t~~~~i~~iG~g~~g~ela-----------~~~~~~G~~v~~~~~~~~ 211 (217)
T d1gesa1 156 AAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAVELT-----------PVAVAAGRRLSERLFNNK 211 (217)
T ss_dssp HHTCCBCTTSCBCCCTTSBCSSTTEEECSGGGTSCCCH-----------HHHHHHHHHHHHHHHTTC
T ss_pred cccEEEcCCccEeeCchhccCCCcEEEECCCccHHHHH-----------HHHHHHHHHHHHHHhCCC
Confidence 46788888999999999999999999999988765443 679999999999999865
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.01 E-value=3.3e-13 Score=148.08 Aligned_cols=33 Identities=18% Similarity=0.428 Sum_probs=30.1
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC
Q psy2951 596 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 630 (1466)
Q Consensus 596 ~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~ 630 (1466)
+|++||||||||++||.+++++|.+ |.++|++.
T Consensus 2 yDviVIG~G~aG~~aA~~aa~~G~~--V~liE~~~ 34 (259)
T d1onfa1 2 YDLIVIGGGSGGMAAARRAARHNAK--VALVEKSR 34 (259)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCC--EEEEESSS
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCe--EEEEecCC
Confidence 7999999999999999999999998 77888754
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.00 E-value=9e-10 Score=110.41 Aligned_cols=120 Identities=23% Similarity=0.345 Sum_probs=88.5
Q ss_pred CCcCCCCCCCC--cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCe---------------------
Q psy2951 703 PRTISQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKS--------------------- 759 (1466)
Q Consensus 703 ~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~--------------------- 759 (1466)
|+.|+|| |.+ ++++. .++ +......+|+|+|||||++|+|+|..+++.|.+
T Consensus 2 Pr~p~Ip-G~d~~~V~~a---~d~--L~~~~~~gkrVvVIGgG~~g~d~a~~~~r~G~~~~~~~~~~~~~~~~~~~~~~~ 75 (162)
T d1ps9a2 2 PRTPPID-GIDHPKVLSY---LDV--LRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQA 75 (162)
T ss_dssp ECCCCCB-TTTSTTEEEH---HHH--HTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSG
T ss_pred CCCCCCC-CCCCCCeEEH---HHH--hhCccccCCceEEEcCchhHHHHHHHHHHcCCccceeHhhhhhhccCCcchhhh
Confidence 7889999 988 77653 232 344556799999999999999999999988753
Q ss_pred ----------------EEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECC-CCcEEe
Q psy2951 760 ----------------VTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLD-NGTTIP 822 (1466)
Q Consensus 760 ----------------V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~-~g~~i~ 822 (1466)
++++..........+...........++..||+++++.++.+|+ +++.. +... +.++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~--~~gv~--~~~~g~e~~i~ 151 (162)
T d1ps9a2 76 GGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKID--DDGLH--VVINGETQVLA 151 (162)
T ss_dssp GGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEE--TTEEE--EEETTEEEEEC
T ss_pred cccccccceeccccceEEEEEeccchhccccchhhhHHHHHHHhhCCeEEEeeeEEEEEc--CCCCE--EecCCeEEEEE
Confidence 44554444444445556666777888999999999999999998 33322 2222 223689
Q ss_pred cCEEEEcccc
Q psy2951 823 ADLVIVGIGT 832 (1466)
Q Consensus 823 ~D~vi~a~G~ 832 (1466)
||+||+|+|+
T Consensus 152 aD~Vv~A~Gq 161 (162)
T d1ps9a2 152 VDNVVICAGQ 161 (162)
T ss_dssp CSEEEECCCE
T ss_pred CCEEEECCCC
Confidence 9999999996
|
| >d1ulia1 b.33.1.2 (A:17-170) Biphenyl dioxygenase large subunit BphA1, N-terminal domain {Rhodococcus sp. (strain RHA1) [TaxId: 101510]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Ring hydroxylating alpha subunit ISP domain domain: Biphenyl dioxygenase large subunit BphA1, N-terminal domain species: Rhodococcus sp. (strain RHA1) [TaxId: 101510]
Probab=98.99 E-value=4.1e-10 Score=109.41 Aligned_cols=81 Identities=14% Similarity=0.232 Sum_probs=62.7
Q ss_pred ecCCCCCEEEEEeeCCeEEEEeCCCCCCCcccCCce-ecCCEEEccCCCceEECCCCeeecCCCC-----------CCCC
Q psy2951 490 SPASSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGS-LGDGRVRCPWHGACFNIATGDIEDFPGM-----------DSLP 557 (1466)
Q Consensus 490 ~~~~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~-~~~~~~~Cp~H~~~f~~~~G~~~~~p~~-----------~~l~ 557 (1466)
...+++.++++++.+|++.|+.|+|||+|++|..+. ..++.++||||||+|+.. |++...|+. -.|.
T Consensus 58 ~~i~~~~ilv~R~~~g~i~af~N~C~HRG~~L~~~~~g~~~~l~CpYHgW~f~~~-G~~~~iP~~~~~~~~~~~~~~~L~ 136 (154)
T d1ulia1 58 NYMGEDPVMVVRQKNGEIRVFLNQCRHRGMRICRADGGNAKSFTCSYHGWAYDTG-GNLVSVPFEEQAFPGLRKEDWGPL 136 (154)
T ss_dssp EEETTEEEEEEECTTSCEEEEESCCTTTCCCSCCSSEEECSCEECTTTCCEECTT-CCEEECTTHHHHCTTCCGGGSSCC
T ss_pred eecCCcceeEEeecccceeeeecccccCCceeeecCCCccceEEeeeceeEEecC-CccccCCcccccCCCCChHHCCCe
Confidence 344556677777788999999999999999998754 466789999999999995 999887742 1356
Q ss_pred eEEEEEEcCeEEEE
Q psy2951 558 CYKVTIQNDDSVVV 571 (1466)
Q Consensus 558 ~~~v~i~~~~~~~~ 571 (1466)
.+++.+..|-+|+.
T Consensus 137 ~~~v~~~~G~Ifv~ 150 (154)
T d1ulia1 137 QARVETYKGLIFAN 150 (154)
T ss_dssp EEEEEEETTEEEEE
T ss_pred EEeEEEECCEEEEE
Confidence 77887766666553
|
| >d1rfsa_ b.33.1.1 (A:) ISP subunit from chloroplast cytochrome bf complex {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Rieske iron-sulfur protein (ISP) domain: ISP subunit from chloroplast cytochrome bf complex species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=98.98 E-value=2.2e-10 Score=106.40 Aligned_cols=66 Identities=23% Similarity=0.466 Sum_probs=57.9
Q ss_pred hhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEEE
Q psy2951 975 ERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQ 1043 (1466)
Q Consensus 975 ~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~~ 1043 (1466)
.++++|+.+.|||.+++|..+. .++.+.|||||++|+ .+|+++..|+..+|++|++++ +++.+++.
T Consensus 45 ~~~v~A~~~~C~H~g~~l~~~~-~~~~~~Cp~Hg~~Fd-~~G~~~~~Pa~~~L~~~~v~v-~~g~i~v~ 110 (127)
T d1rfsa_ 45 TLATFGINAVCTHLGCVVPFNA-AENKFICPCHGSQYN-NQGRVVRGPAPLSLALAHCDV-DDGKVVFV 110 (127)
T ss_dssp SBCSEEEECBCTTTCCBCCEET-TTTEEECTTTCCEEE-TTCCEEESSCCSCCCEEEEEE-ETTEEEEE
T ss_pred CCEEEEEcCCCCCCCCCccCcc-cCCeEEcCCCCeEEC-CCCCCCcCCCCCCcceEeEEE-ECCEEEEE
Confidence 4579999999999999998876 457899999999999 599999999999999999999 55666664
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=98.97 E-value=3.1e-09 Score=114.54 Aligned_cols=156 Identities=21% Similarity=0.312 Sum_probs=102.8
Q ss_pred eEEEEcCCHHHHHHHHHHhcCCC-eEEEEcCCCc-------CC-------------------------------ccccc-
Q psy2951 1207 NVVVIGSSFIGMEAAAFCASKVK-SVTVVGRGAV-------PF-------------------------------QESLG- 1246 (1466)
Q Consensus 1207 ~vvVvG~g~~g~e~a~~l~~~g~-~v~vv~~~~~-------~~-------------------------------~~~~~- 1246 (1466)
.|+|||+|+.|+.+|..+++.|. .|.+++.... .+ ...+.
T Consensus 5 DviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~~~~~~~~~~lGG~c~n~g~ip~k~l~~~a~~~~~~~~~~~~G~~~~~ 84 (238)
T d1aoga1 5 DLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVHGPPFFSALGGTCVNVGCVPKKLMVTGAQYMEHLRESAGFGWEFDR 84 (238)
T ss_dssp SEEEECCSHHHHHHHHHHHHTSCCCEEEEESCSSSBTTTBCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEECCG
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCEEEEEEeecccCccccccccccccccccccchhhhhhHHHHHHHHHHHhcCCcccC
Confidence 69999999999999999999875 6778775310 00 00000
Q ss_pred ------------------HHHHHHHHHHH-HhCCcEEEcCceEEEEEecCCCcEEEEEcC------CCCeeecCEEEEee
Q psy2951 1247 ------------------KEVGERITKLF-ESKGVKFVMKANVSSFEKNEKNDVTAANLD------NGTTIPADLVIVGI 1301 (1466)
Q Consensus 1247 ------------------~~~~~~l~~~~-~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~------~g~~i~~D~vv~a~ 1301 (1466)
..........+ ...||+++.+..... . .. ....... ....+++|.+++++
T Consensus 85 ~~~~~d~~~l~~~k~~~v~~~~~~~~~~l~~~~gV~vi~g~g~~~-~--~~--~~~~~~~~~~~~~~~~~~~a~~v~i~~ 159 (238)
T d1aoga1 85 TTLRAEWKNLIAVKDEAVLNINKSYDEMFRDTEGLEFFLGWGSLE-S--KN--VVNVRESADPASAVKERLETEHILLAS 159 (238)
T ss_dssp GGCEECHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEEESEEEEE-E--TT--EEEEESSSSTTSCEEEEEEBSCEEECC
T ss_pred ccccccHHHHHHHHHHhhhccccceeeeeecccccEEEEEEeecc-c--cc--cccccccccccccccccccccceeeec
Confidence 01112223333 466788776542211 1 11 1111111 11456888888876
Q ss_pred ccccCcc--------c--cccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHH
Q psy2951 1302 GTVLNTN--------Y--LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAA 1371 (1466)
Q Consensus 1302 G~~p~~~--------~--~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa 1371 (1466)
+..|... . +...|+.++ +|+|.||++|||+.|+|||+|||...+... +.|..||+.||
T Consensus 160 ~~~~~~~~~~~~~~~~l~~~~~gv~~~-~G~I~vde~~~T~~~~iyAvGDv~~~~~l~-----------~~A~~eg~~aa 227 (238)
T d1aoga1 160 GSWPHMPNGRSPRTKDLQLQNAGVMIK-NGGVQVDEYSRTNVSNIYAIGDVTNRVMLT-----------PVAINEAAALV 227 (238)
T ss_dssp CEEECCCCCEEECCGGGCGGGTTCCEE-TTEECCCTTCBCSSTTEEECGGGGTSCCCH-----------HHHHHHHHHHH
T ss_pred ccccccccccccceeeecccccEEEEc-CCeEEecCCeeeccCCEEEEEEecCCccch-----------hhHHHHHHHHH
Confidence 6665433 2 345788887 688999999999999999999998877654 67999999999
Q ss_pred HHhcCCCC
Q psy2951 1372 LNMVEKKT 1379 (1466)
Q Consensus 1372 ~~i~g~~~ 1379 (1466)
++|+|+.+
T Consensus 228 ~~i~g~~~ 235 (238)
T d1aoga1 228 DTVFGTTP 235 (238)
T ss_dssp HHHHSSSC
T ss_pred HHHcCCCC
Confidence 99998653
|
| >d1z01a1 b.33.1.2 (A:16-163) 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Ring hydroxylating alpha subunit ISP domain domain: 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO species: Pseudomonas putida [TaxId: 303]
Probab=98.97 E-value=1.2e-10 Score=113.31 Aligned_cols=74 Identities=20% Similarity=0.449 Sum_probs=62.3
Q ss_pred hhhhhhhhhhcCCCCCCCcccccee--ecCCEEEcCCCCceeecCCCccccCCC--------CCCCCeEEEEEEcCCEEE
Q psy2951 972 QFAERNIYAVGTKCSHYGAPLVKGS--LGDGRVRCPWHGACFNIATGDIEDFPG--------MDSLPCYKVTIQNDDSVV 1041 (1466)
Q Consensus 972 ~~~~g~~~a~~~~C~h~g~~l~~g~--~~~~~~~cp~h~~~f~~~~g~~~~~p~--------~~~l~~~~v~~~~~~~~~ 1041 (1466)
+..+|+++|+.+.|||.|++|..|. ..++.+.||||||.|++.+|.+...|. ...|++|++++ .++.++
T Consensus 56 ~~~~g~i~A~~n~CpHrg~~L~~g~~~~~~~~i~Cp~Hgw~fd~~~G~~~~~p~~~~~~~~~~~~l~~y~v~~-~~g~I~ 134 (148)
T d1z01a1 56 RRVNGKVFALKDQCLHRGVRLSEKPTCFTKSTISCWYHGFTFDLETGKLVTIVANPEDKLIGTTGVTTYPVHE-VNGMIF 134 (148)
T ss_dssp EEETTEEEEEESSCTTTCCCGGGSCCCSSTTEEECTTTCEEEETTTCBEEEETTCTTCTTTTSCBCCEECEEE-ETTEEE
T ss_pred EEECCEEEEEEeecCccccEeEccccccccCEEEecccCCEEecCcceEecccccccccCCccCCcceEEEEE-ECCEEE
Confidence 3457899999999999999999885 457899999999999999999987664 23499999998 778888
Q ss_pred EEcch
Q psy2951 1042 VQARK 1046 (1466)
Q Consensus 1042 ~~~~~ 1046 (1466)
+....
T Consensus 135 v~l~~ 139 (148)
T d1z01a1 135 VFVRE 139 (148)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 87543
|
| >d2de6a1 b.33.1.2 (A:1-142) Terminal oxygenase component of carbazole CarAa {Janthinobacterium sp. j3 [TaxId: 213804]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Ring hydroxylating alpha subunit ISP domain domain: Terminal oxygenase component of carbazole CarAa species: Janthinobacterium sp. j3 [TaxId: 213804]
Probab=98.96 E-value=1e-10 Score=112.95 Aligned_cols=83 Identities=18% Similarity=0.328 Sum_probs=65.0
Q ss_pred EEeecCchhhhhhhhhhhhhhcCCCCCCCccccceee--cCCEEEcCCCCceeecCCCccccCCCC--------CCCCeE
Q psy2951 961 ILTVGMDPLAAQFAERNIYAVGTKCSHYGAPLVKGSL--GDGRVRCPWHGACFNIATGDIEDFPGM--------DSLPCY 1030 (1466)
Q Consensus 961 ~~~~g~~~~~~~~~~g~~~a~~~~C~h~g~~l~~g~~--~~~~~~cp~h~~~f~~~~g~~~~~p~~--------~~l~~~ 1030 (1466)
+.+.+...++.+ .+|+++|+.+.|||.|++|+.|.. .++.+.||||||+|++.+|.+...|.. ..|+.|
T Consensus 46 ~~i~g~~ivv~r-~~g~v~a~~n~CpHrga~L~~g~~~~~~~~i~Cp~Hgw~fdl~~G~~~~~p~~~~~~~~~~~~l~~y 124 (142)
T d2de6a1 46 LKLLGENLLVNR-IDGKLYCLKDRCLHRGVQLSVKVECKTKSTITCWYHAWTYRWEDGVLCDILTNPTSAQIGRQKLKTY 124 (142)
T ss_dssp EEETTEEEEEEE-ETTEEEEEESSCTTTCCCGGGGCCCCSTTEEECTTTCEEEETTTCBEEEETTCTTCTTTTSCBCCBC
T ss_pred EEECCEEEEEEE-cCCEEEEEeCccCCCCccCCccccccccCEEeccceeeEEeccCCceEecCCCcccCCccccCCCEE
Confidence 333444434445 478999999999999999998753 467899999999999999999876543 238999
Q ss_pred EEEEEcCCEEEEEcc
Q psy2951 1031 KVTIQNDDSVVVQAR 1045 (1466)
Q Consensus 1031 ~v~~~~~~~~~~~~~ 1045 (1466)
++++ .+|.+++...
T Consensus 125 ~v~e-~~G~I~v~l~ 138 (142)
T d2de6a1 125 PVQE-AKGCVFIYLG 138 (142)
T ss_dssp CEEE-ETTEEEEEES
T ss_pred eEEE-ECCEEEEEeC
Confidence 9998 7788888753
|
| >d2b1xa1 b.33.1.2 (A:1-162) Naphthalene 1,2-dioxygenase alpha subunit, N-domain {Rhodococcus sp. ncimb12038 [TaxId: 92694]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Ring hydroxylating alpha subunit ISP domain domain: Naphthalene 1,2-dioxygenase alpha subunit, N-domain species: Rhodococcus sp. ncimb12038 [TaxId: 92694]
Probab=98.96 E-value=7.7e-10 Score=108.35 Aligned_cols=64 Identities=19% Similarity=0.376 Sum_probs=53.3
Q ss_pred ecCCCCCEEEEEeeCCeEEEEeCCCCCCCcccCCce-ecCCEEEccCCCceEECCCCeeecCCCCC
Q psy2951 490 SPASSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGS-LGDGRVRCPWHGACFNIATGDIEDFPGMD 554 (1466)
Q Consensus 490 ~~~~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~-~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~ 554 (1466)
....+..++++++.+|+++|+.|+|||+|++|..+. ..++.++||||||+|+.+ |+|...|...
T Consensus 64 ~~~~~~~~vv~R~~dG~i~a~~N~C~HRG~~l~~~~~g~~~~i~CpYHgW~yd~~-G~l~~~P~~~ 128 (162)
T d2b1xa1 64 RYISEDQFIVCRDEGGEIRGHLNACRHRGMQVCRAEMGNTSHFRCPYHGWTYSNT-GSLVGVPAGK 128 (162)
T ss_dssp EEETTEEEEEEECTTSCEEEEESSCTTTCCCSCCSSEEECSEEECTTTCCEEETT-SCEEECTTTT
T ss_pred EeecCCceEEEecCCcceEEeecccccCcccccccccCccccccCCCceeEEcCC-CCeEECCCcc
Confidence 334556677888889999999999999999998775 467789999999999985 9999988643
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.94 E-value=1.4e-09 Score=109.01 Aligned_cols=120 Identities=23% Similarity=0.345 Sum_probs=89.4
Q ss_pred CCcCCCCCCCC--cEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHHHhcCCCe---------------------
Q psy2951 1174 PRTISQADGVN--KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKS--------------------- 1230 (1466)
Q Consensus 1174 ~~~~~~~~g~~--~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~--------------------- 1230 (1466)
|+.|++| |.+ +|++. .|+ |+.....+++|+|||+|++|+|+|..+++.|.+
T Consensus 2 Pr~p~Ip-G~d~~~V~~a---~d~--L~~~~~~gkrVvVIGgG~~g~d~a~~~~r~G~~~~~~~~~~~~~~~~~~~~~~~ 75 (162)
T d1ps9a2 2 PRTPPID-GIDHPKVLSY---LDV--LRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQA 75 (162)
T ss_dssp ECCCCCB-TTTSTTEEEH---HHH--HTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSG
T ss_pred CCCCCCC-CCCCCCeEEH---HHH--hhCccccCCceEEEcCchhHHHHHHHHHHcCCccceeHhhhhhhccCCcchhhh
Confidence 7899999 988 88763 344 455666799999999999999999999998864
Q ss_pred ----------------EEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCC-Ceee
Q psy2951 1231 ----------------VTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG-TTIP 1293 (1466)
Q Consensus 1231 ----------------v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g-~~i~ 1293 (1466)
++.+......+...++......+...++..||+++++.++.+++ ++|.. +...+. .+++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~--~~gv~--~~~~g~e~~i~ 151 (162)
T d1ps9a2 76 GGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKID--DDGLH--VVINGETQVLA 151 (162)
T ss_dssp GGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEE--TTEEE--EEETTEEEEEC
T ss_pred cccccccceeccccceEEEEEeccchhccccchhhhHHHHHHHhhCCeEEEeeeEEEEEc--CCCCE--EecCCeEEEEE
Confidence 34444444444444555556667888999999999999999998 44432 333322 3589
Q ss_pred cCEEEEeecc
Q psy2951 1294 ADLVIVGIGT 1303 (1466)
Q Consensus 1294 ~D~vv~a~G~ 1303 (1466)
||.||+|+|.
T Consensus 152 aD~Vv~A~Gq 161 (162)
T d1ps9a2 152 VDNVVICAGQ 161 (162)
T ss_dssp CSEEEECCCE
T ss_pred CCEEEECCCC
Confidence 9999999994
|
| >d2e74d1 b.33.1.1 (D:46-179) ISP subunit from the cytochrome b6f complex, soluble domain {Mastigocladus laminosus [TaxId: 83541]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Rieske iron-sulfur protein (ISP) domain: ISP subunit from the cytochrome b6f complex, soluble domain species: Mastigocladus laminosus [TaxId: 83541]
Probab=98.93 E-value=2.2e-10 Score=107.77 Aligned_cols=67 Identities=25% Similarity=0.522 Sum_probs=58.1
Q ss_pred hhhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEEE
Q psy2951 974 AERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVVQ 1043 (1466)
Q Consensus 974 ~~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~~ 1043 (1466)
..++++|+.+.|||.|++|..|.. ++.+.||||+++|++ +|+++..|+..+|++|++++ +++.+++.
T Consensus 52 ~~g~~~A~~~~C~H~G~~l~~g~~-~~~~~Cp~Hg~~Fd~-~G~~~~gPa~~~L~~y~v~v-~~~~i~V~ 118 (134)
T d2e74d1 52 EAIRDYGINAVCTHLGCVVPWNAA-ENKFKCPCHGSQYDE-TGKVIRGPAPLSLALCHATV-QDDNIVLT 118 (134)
T ss_dssp -CCCSEEEECBCTTTCCBCCBCTT-TSCEEETTTTEEECS-SSCBCSSSCCSCCCEEEEEC-CTTSCEEE
T ss_pred CCCcEEEEeccccCCEEEcccccc-CCccCCCCCCcEECC-CCCEEeCCCCCCcceeeEEE-ECCEEEEe
Confidence 467899999999999999999874 468899999999996 99999999999999999999 55555553
|
| >d2bmoa1 b.33.1.2 (A:3-152) Nitrobenzene dioxygenase alpha subunit, NBDO-alpha {Comamonas sp. JS765 [TaxId: 58226]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Ring hydroxylating alpha subunit ISP domain domain: Nitrobenzene dioxygenase alpha subunit, NBDO-alpha species: Comamonas sp. JS765 [TaxId: 58226]
Probab=98.92 E-value=7.2e-10 Score=106.52 Aligned_cols=61 Identities=18% Similarity=0.365 Sum_probs=52.2
Q ss_pred cCCCCCEEEEEeeCCeEEEEeCCCCCCCcccCCcee-cCCEEEccCCCceEECCCCeeecCCC
Q psy2951 491 PASSTPKTLAQSTTSNIYAVGTKCSHYGAPLVKGSL-GDGRVRCPWHGACFNIATGDIEDFPG 552 (1466)
Q Consensus 491 ~~~~~~~~~~~~~~g~~~a~~~~C~H~~~~l~~g~~-~~~~~~Cp~H~~~f~~~~G~~~~~p~ 552 (1466)
...+..++++++.+|++.|+.|.|||+|++|..+.. ....++||||||+|+.+ |++...|.
T Consensus 54 ~i~~~~~vv~R~~dg~i~af~N~C~HRG~~L~~~~~g~~~~i~CpYHgW~yd~~-G~l~~~P~ 115 (150)
T d2bmoa1 54 KMGVDEVIVSRQNDGSVRAFLNVCRHRGKTLVHAEAGNAKGFVCGYHGWGYGSN-GELQSVPF 115 (150)
T ss_dssp EETTEEEEEEECTTSCEEEEESBCTTTCCBCCCSSEEECSEEECTTTCCEEETT-SCEEECTT
T ss_pred eecCceeEEEecCCCchhhhhhhcccccccccccccccccceEecccceeeccc-cchhcCCC
Confidence 344567777777899999999999999999998864 56799999999999995 99988875
|
| >d1g8kb_ b.33.1.1 (B:) Arsenite oxidase Rieske subunit {Alcaligenes faecalis [TaxId: 511]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Rieske iron-sulfur protein (ISP) domain: Arsenite oxidase Rieske subunit species: Alcaligenes faecalis [TaxId: 511]
Probab=98.91 E-value=8.9e-10 Score=102.83 Aligned_cols=65 Identities=22% Similarity=0.362 Sum_probs=57.6
Q ss_pred hhhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeec-CCCccccCCCCCCCCeEEEEEEcCCE
Q psy2951 974 AERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNI-ATGDIEDFPGMDSLPCYKVTIQNDDS 1039 (1466)
Q Consensus 974 ~~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~-~~g~~~~~p~~~~l~~~~v~~~~~~~ 1039 (1466)
.+++++|+.+.|||.+++|..+. .++.+.||||||+||+ ++|+++..|+..+|+.|+++++.++.
T Consensus 49 ~~g~i~A~~~~CpH~g~~l~~~~-~~~~i~Cp~Hg~~Fd~~~~G~~~~gPa~~~L~~~~v~ve~~~~ 114 (133)
T d1g8kb_ 49 PDDDIVAYSVLCTHMGCPTSYDS-SSKTFSCPCHFTEFDAEKAGQMICGEATADLPRVLLRYDAASD 114 (133)
T ss_dssp TTTCEEEEECBCTTTCCBCEEET-TTTEEECTTTCCEEEGGGTTEEEESSCSSCCCEEEEEEETTTT
T ss_pred CCCEEEEEehhcCCCCcccccCc-ccCEEECCCCCeEEecCCCceEeCCCCCCCCCeEeEEEECCCC
Confidence 46789999999999999998775 5689999999999998 58999999999999999999966543
|
| >d1jm1a_ b.33.1.1 (A:) Rieske protein II (SoxF) {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Rieske iron-sulfur protein (ISP) domain: Rieske protein II (SoxF) species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=98.88 E-value=1.4e-09 Score=108.51 Aligned_cols=73 Identities=22% Similarity=0.446 Sum_probs=61.8
Q ss_pred eCCeEEEEeCCCCCCCcccCCcee-----------cCCEEEccCCCceEEC-CCCeeecCCCCCCCCeEEEEEEc--CeE
Q psy2951 503 TTSNIYAVGTKCSHYGAPLVKGSL-----------GDGRVRCPWHGACFNI-ATGDIEDFPGMDSLPCYKVTIQN--DDS 568 (1466)
Q Consensus 503 ~~g~~~a~~~~C~H~~~~l~~g~~-----------~~~~~~Cp~H~~~f~~-~~G~~~~~p~~~~l~~~~v~i~~--~~~ 568 (1466)
.++.++|+++.|||+||++.+... +++.|.|||||++||+ ++|++..+|+..+|..++++++. +.+
T Consensus 81 p~~~ivA~s~iCtHlGC~~~~~~~~~~~~~~~~~~~~~~i~CpcHgS~FD~~~gG~v~~GPA~~pLp~v~Le~d~~~g~i 160 (202)
T d1jm1a_ 81 PNGTIFAFSDVCVHLGCQLPAQVIVSSESDPGLYAKGADLHCPCHGSIYALKDGGVVVSGPAPRPLPIVILDYDSSTGDI 160 (202)
T ss_dssp TTTCEEEEESBCTTTCCBCCTTEEESSTTSSEEETTTTEEECTTTCCEEEGGGTSEEEESSCCSCCCBEEEEECTTTCEE
T ss_pred CCCeEEEEeCcCCCCCCcccccccccccccccccCCCCEEEccCcCCEEcCCCCCeEeCCCCCCCcCccEEEEeCCCCeE
Confidence 478899999999999999976432 3568999999999998 58999999999999999999864 677
Q ss_pred EEEEccc
Q psy2951 569 VVVQARK 575 (1466)
Q Consensus 569 ~~~~~~~ 575 (1466)
+.+..+-
T Consensus 161 yAvG~~~ 167 (202)
T d1jm1a_ 161 YAVGTNA 167 (202)
T ss_dssp EEEEESS
T ss_pred EEEEccC
Confidence 7666653
|
| >d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=98.88 E-value=4.7e-09 Score=98.63 Aligned_cols=105 Identities=16% Similarity=0.192 Sum_probs=85.5
Q ss_pred HHHhhcccCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEE
Q psy2951 171 DANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSF 250 (1466)
Q Consensus 171 ~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i 250 (1466)
++..++..++++|+|+|||+|++|+|.|..|++.+++|++++|.+... .++...+.+.+.....++.++.++.+.++
T Consensus 16 yca~cD~~~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~v~~i 92 (126)
T d1trba2 16 ACATSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR---AEKILIKRLMDKVENGNIILHTNRTLEEV 92 (126)
T ss_dssp SCHHHHGGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC---CCHHHHHHHHHHHHTSSEEEECSCEEEEE
T ss_pred EEEecchHHhCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccccc---chhHHHHHHHHhhcccceeEecceEEEEE
Confidence 334455667789999999999999999999999999999999987542 35777788888888899999999999999
Q ss_pred EecCCCCeEEEEcCCC------cEEeccEEEEeec
Q psy2951 251 EKNEKNDVTAANLDNG------TTIPADLVIVGIG 279 (1466)
Q Consensus 251 ~~~~~~~~~~v~~~~g------~~i~~D~Vi~a~G 279 (1466)
.+++ ..+..+++.+. +++++|.|++++|
T Consensus 93 ~G~~-~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG 126 (126)
T d1trba2 93 TGDQ-MGVTGVRLRDTQNSDNIESLDVAGLFVAIG 126 (126)
T ss_dssp EECS-SSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred ECCC-CceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence 9864 34666665432 4699999999987
|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=98.88 E-value=1.8e-09 Score=101.45 Aligned_cols=114 Identities=22% Similarity=0.279 Sum_probs=83.8
Q ss_pred CcCCCCCCCC-----cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHH
Q psy2951 704 RTISQADGVN-----KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEV 778 (1466)
Q Consensus 704 ~~~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~ 778 (1466)
+.+++| |.+ ++.+. ..+...+.++|+|+|||+|++|+|.|..|++...+|++++|.+.... .+.
T Consensus 2 R~L~ip-ge~~~~gkGV~yc------a~cD~~~~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~---~~~- 70 (126)
T d1fl2a2 2 RNMNVP-GEDQYRTKGVTYC------PHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA---DQV- 70 (126)
T ss_dssp CCCCCT-TTTTTBTTTEESC------HHHHGGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCS---CHH-
T ss_pred CcCCCC-CHHHhcCCCEEEE------EecChhhcCCceEEEEeCCHHHHHHHHhhhccCCceEEEeccccccc---ccc-
Confidence 456677 765 44432 22334455699999999999999999999999999999999875432 222
Q ss_pred HHHHHHHHH-hcCcEEEccceEEEEEecCCCceEEEECCC---C--cEEecCEEEEcccc
Q psy2951 779 GERITKLFE-SKGVKFVMKANVSSFEKNEKNDVTAANLDN---G--TTIPADLVIVGIGT 832 (1466)
Q Consensus 779 ~~~~~~~l~-~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~---g--~~i~~D~vi~a~G~ 832 (1466)
+.+.+. ..+|++++++++.++. +++..+..+++.+ | +++++|.|++++|.
T Consensus 71 ---~~~~~~~~~~I~v~~~~~v~~i~-G~~~~v~~v~l~~~~tge~~~l~vdgvFv~IGl 126 (126)
T d1fl2a2 71 ---LQDKLRSLKNVDIILNAQTTEVK-GDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGL 126 (126)
T ss_dssp ---HHHHHHTCTTEEEESSEEEEEEE-ESSSSEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred ---cccccccccceeEEcCcceEEEE-ccccceeeEEEEECCCCCEEEEECCEEEEEeCC
Confidence 233344 4579999999999998 4445677777643 3 37999999999984
|
| >d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=98.86 E-value=8.2e-09 Score=96.92 Aligned_cols=100 Identities=17% Similarity=0.212 Sum_probs=82.4
Q ss_pred cccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCC
Q psy2951 728 APHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEK 807 (1466)
Q Consensus 728 ~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~ 807 (1466)
...+.++|+|+|||+|++|+|.|..|.+.+++||+++|++... .++...+.+.+.....+|.+++++.+.++. +++
T Consensus 21 D~~~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~-G~~ 96 (126)
T d1trba2 21 DGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR---AEKILIKRLMDKVENGNIILHTNRTLEEVT-GDQ 96 (126)
T ss_dssp HGGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC---CCHHHHHHHHHHHHTSSEEEECSCEEEEEE-ECS
T ss_pred chHHhCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccccc---chhHHHHHHHHhhcccceeEecceEEEEEE-CCC
Confidence 3445569999999999999999999999999999999997542 356677777777788999999999999999 445
Q ss_pred CceEEEECCCC------cEEecCEEEEccc
Q psy2951 808 NDVTAANLDNG------TTIPADLVIVGIG 831 (1466)
Q Consensus 808 ~~~~~v~~~~g------~~i~~D~vi~a~G 831 (1466)
..+..+++.+. +++++|.|++++|
T Consensus 97 ~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG 126 (126)
T d1trba2 97 MGVTGVRLRDTQNSDNIESLDVAGLFVAIG 126 (126)
T ss_dssp SSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred CceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence 55777776542 3699999999987
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=98.86 E-value=1.1e-08 Score=111.07 Aligned_cols=162 Identities=21% Similarity=0.275 Sum_probs=116.5
Q ss_pred eEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcc-------------------------------------------
Q psy2951 1207 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQE------------------------------------------- 1243 (1466)
Q Consensus 1207 ~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~------------------------------------------- 1243 (1466)
.|+|||+|+.|+-+|..|+++|.+|+++++.+.+..+
T Consensus 4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (251)
T d2i0za1 4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNEDI 83 (251)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhhhhhhhhHHH
Confidence 5999999999999999999999999999987543100
Q ss_pred ------------------cc-----cHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEe
Q psy2951 1244 ------------------SL-----GKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVG 1300 (1466)
Q Consensus 1244 ------------------~~-----~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a 1300 (1466)
.+ ...+.+.|.+.+++.||+++.+++|+++. .+++.+..|.+++|+++.||.||+|
T Consensus 84 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~-~~~~~~~~v~~~~g~~i~a~~vI~A 162 (251)
T d2i0za1 84 ITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIE-YENGQTKAVILQTGEVLETNHVVIA 162 (251)
T ss_dssp HHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEE-EETTEEEEEEETTCCEEECSCEEEC
T ss_pred HHHHHhcCCccccccccceecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEE-EECCEEEEEEeCCCCeEecCeEEEc
Confidence 00 02355667788889999999999999998 4667788899999999999999999
Q ss_pred ecccc--Cc-------cccccCCceeeCC--CeEEeC----CCc-cccCCCEEEecccccCCCccCCCceeeeecHHHHH
Q psy2951 1301 IGTVL--NT-------NYLDGKGVELNGQ--KAVVVN----EYL-ETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQ 1364 (1466)
Q Consensus 1301 ~G~~p--~~-------~~~~~~gl~~~~~--G~i~vd----~~~-~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~ 1364 (1466)
+|... .+ .+++..+..+... +.+.++ ..+ .+..|++|++|++....... |++. ...|.
T Consensus 163 tGg~S~p~~Gs~g~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~l~~~~~~--gG~~----~~~a~ 236 (251)
T d2i0za1 163 VGGKSVPQTGSTGDGYAWAEKAGHTITELFGGGVSVKEINPKEMSSKFTNGLYFCGEVLDIHGYT--GGYN----ITSAL 236 (251)
T ss_dssp CCCSSSGGGSCSSHHHHHHHHTTCCEEEEEEEEECGGGEETTTTEESSSBTEEECGGGBSCBCCT--TTHH----HHHHH
T ss_pred cCCccccccCCCcccchhcccceeeeeeeeecccCccccCchhHHHhcCCCcEeeeeEEEccCCc--chHH----HHHHH
Confidence 99643 22 2566666655421 111111 122 34579999999987654432 3332 25677
Q ss_pred HHHHHHHHHhc
Q psy2951 1365 YHGRIAALNMV 1375 (1466)
Q Consensus 1365 ~qa~~aa~~i~ 1375 (1466)
..|++|+..+.
T Consensus 237 ~~G~~a~~~~~ 247 (251)
T d2i0za1 237 VTGRIAGTTAG 247 (251)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888887764
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.85 E-value=2e-11 Score=132.44 Aligned_cols=151 Identities=13% Similarity=0.012 Sum_probs=93.1
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCC-----ccEEEEcCCCCCCCCCCccchhcccCcccccccCHhHhhhCCcEEEEce
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFT-----GKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGK 669 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~ 669 (1466)
+++|+|||||||||+||+.|+++|++ ..|+++|+.+.+++....-..........+......++...++++++++
T Consensus 2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~gi~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ 81 (239)
T d1lqta2 2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV 81 (239)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeeeccCcccccchhhhhhhhhhhccCCceEEEEE
Confidence 46999999999999999999999864 4689999988766522110101112334455555667778899999998
Q ss_pred EEEEeccccccEEEccCCCEEecCEEEEcCCCCCCcCCCCCCCC------cEEEecCHHHHHhh---cccCCCCCcEEEE
Q psy2951 670 KIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN------KVFYLRTVEDANNI---APHITPESNVVVI 740 (1466)
Q Consensus 670 ~v~~i~~~~~~~v~~~~~~~~~~d~lviAtG~~~~~~~~~~g~~------~~~~~~~~~~~~~~---~~~~~~~~~vvVv 740 (1466)
++... .. . +.....||++++|||+.+..+.++ |.+ ....+......... ......+++++|+
T Consensus 82 ~v~~~--~~-----~-~~~~~~~~~v~~atGa~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vv~ 152 (239)
T d1lqta2 82 VVGEH--VQ-----P-GELSERYDAVIYAVGAQSRGVPTP-GLPFDDQSGTIPNVGGRINGSPNEYVVGWIKRGPTGVIG 152 (239)
T ss_dssp CBTTT--BC-----H-HHHHHHSSEEEECCCCCEECCCCT-TSCCBTTTTBCCEETTEETTCSSEEECTHHHHCSCSCTT
T ss_pred Eeccc--cc-----h-hhhhccccceeeecCCCccccccc-cccccccccchhhhhhhhccccccccceeecCCCEEEEe
Confidence 54221 00 0 011246999999999887766665 443 11111000000000 0001136788888
Q ss_pred CCChHHHHHHHHHh
Q psy2951 741 GSSFIGMEAAAFCA 754 (1466)
Q Consensus 741 G~G~~g~e~A~~l~ 754 (1466)
|+|+.+++++..+.
T Consensus 153 g~g~~a~d~a~~~v 166 (239)
T d1lqta2 153 TNKKDAQDTVDTLI 166 (239)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHH
Confidence 99999999987653
|
| >d3cx5e1 b.33.1.1 (E:87-215) ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Rieske iron-sulfur protein (ISP) domain: ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.84 E-value=1.3e-09 Score=100.26 Aligned_cols=65 Identities=22% Similarity=0.345 Sum_probs=57.2
Q ss_pred CCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCeEE
Q psy2951 504 TSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSV 569 (1466)
Q Consensus 504 ~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~ 569 (1466)
++++++++..|||.||.+.+..-..+.+.|||||++||. +|++..+|+..+|..++.+++++.++
T Consensus 63 ~~~~~v~~~~CtHlGC~~~~~~~~~~~~~CPCHgs~fd~-~G~v~~GPA~~~L~~~~~~~~~~~i~ 127 (129)
T d3cx5e1 63 DPQWLIMLGICTHLGCVPIGEAGDFGGWFCPCHGSHYDI-SGRIRKGPAPLNLEIPAYEFDGDKVI 127 (129)
T ss_dssp STTEEEEECCCTTTSCCCEEEETTTTEEEETTTTEEECT-TCCEEESSCCSCCCCCCEEEETTEEE
T ss_pred cccEEEEEeeccCcceeeeeccCcCCeEEEcCcCCCCCC-CCCEEeCCCCCCCCCCcEEEECCEEE
Confidence 567899999999999999776655569999999999998 59999999999999999999877554
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=98.81 E-value=2.2e-09 Score=118.44 Aligned_cols=118 Identities=19% Similarity=0.192 Sum_probs=87.1
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCC---------CCccch----------hc---c-----c
Q psy2951 593 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD---------RVKLSK----------QL---D-----I 645 (1466)
Q Consensus 593 ~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~---------~~~~~~----------~~---~-----~ 645 (1466)
+...||+|||||++||++|+.|+++|.+ ++++|+.+.+++. .+.... .. . .
T Consensus 5 ~~~~dV~IIGAG~sGl~~a~~L~~~G~~--v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~p 82 (298)
T d1w4xa1 5 PEEVDVLVVGAGFSGLYALYRLRELGRS--VHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYA 82 (298)
T ss_dssp CSEEEEEEECCSHHHHHHHHHHHHTTCC--EEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSC
T ss_pred CCCCCEEEECccHHHHHHHHHHHhCCCC--EEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCccccC
Confidence 3578999999999999999999999987 7888887554321 000000 00 0 1
Q ss_pred CcccccccCHhHhhhCCc--EEEEceEEEEec---cccccEEEccCCCEEecCEEEEcCC--CCCCcCCCCCCCC
Q psy2951 646 KADSILLRTEEFYKDNDI--HVIKGKKIISDS---ELNEKKIKLQDGTSIDFTKIYLATG--SSPRTISQADGVN 713 (1466)
Q Consensus 646 ~~~~~~~~~~~~~~~~gv--~~~~~~~v~~i~---~~~~~~v~~~~~~~~~~d~lviAtG--~~~~~~~~~~g~~ 713 (1466)
..+++..++..+.+++++ .++++++|+++. +....+|.+.++.++++|+||+||| +.|..|.++ +++
T Consensus 83 ~~~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~ls~~~~p~~~-~~~ 156 (298)
T d1w4xa1 83 SQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSDALTGALF-KID 156 (298)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCTTHHHH-TSE
T ss_pred ccchHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeecccccccCCccc-ccc
Confidence 234556667777888888 599999998883 2234688888999999999999999 678888777 655
|
| >d1nyka_ b.33.1.1 (A:) Soluble Rieske protein {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Rieske iron-sulfur protein (ISP) domain: Soluble Rieske protein species: Thermus thermophilus [TaxId: 274]
Probab=98.80 E-value=1.2e-09 Score=105.92 Aligned_cols=70 Identities=20% Similarity=0.421 Sum_probs=62.4
Q ss_pred hhhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCC-CccccCCCCCCCCeEEEEEEcCCEEEEEc
Q psy2951 974 AERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIAT-GDIEDFPGMDSLPCYKVTIQNDDSVVVQA 1044 (1466)
Q Consensus 974 ~~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~-g~~~~~p~~~~l~~~~v~~~~~~~~~~~~ 1044 (1466)
..+.++|+.+.|||.|++|..+...++.+.||||+|+||+++ |.+...|+..+|+.|++++ +++.+++..
T Consensus 76 ~~d~i~A~~~~CtH~g~~l~~~~~~~~~~~Cp~Hgs~FD~~~gg~v~~gPa~~~L~~~~~~~-~~g~i~v~~ 146 (156)
T d1nyka_ 76 AAEGVVAYSAVCTHLGCIVSQWVADEEAALCPCHGGVYDLRHGAQVIAGPPPRPVPQLPVRV-EDGVLVAAG 146 (156)
T ss_dssp CBTTEEEEECBCTTTCCBCCEEEGGGTEEECTTTCCEEEGGGTTEEEESSCSSCCCEECEEE-ETTEEEECS
T ss_pred cCCcEEEEcccCcccccccccccccCCeeeccccceEEecCCCceEeCCCCCCCCCEEEEEE-ECCEEEEee
Confidence 445689999999999999999988899999999999999975 8888999999999999999 677887753
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.75 E-value=7.1e-09 Score=107.77 Aligned_cols=166 Identities=20% Similarity=0.225 Sum_probs=107.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHhcCCC-eEEEEcCCCcCCcc--------cccHHHHHHHHHHHHhCCcEEEcCceEEEEEe
Q psy2951 1205 ESNVVVIGSSFIGMEAAAFCASKVK-SVTVVGRGAVPFQE--------SLGKEVGERITKLFESKGVKFVMKANVSSFEK 1275 (1466)
Q Consensus 1205 ~~~vvVvG~g~~g~e~a~~l~~~g~-~v~vv~~~~~~~~~--------~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~ 1275 (1466)
+|||+|||+|++|+++|..|+++|. +|+++++.+.+... .................+..+.....+....
T Consensus 4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~- 82 (196)
T d1gtea4 4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSENE- 82 (196)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBSTTS-
T ss_pred CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhhhhccccccccccccchhhhhhccceeEEeeEEeccce-
Confidence 7899999999999999999999998 59999998865331 2234455555566677778877765542211
Q ss_pred cCCCcEEEEEcCCCCeeecCEEEEeeccccCcccc----ccCCceeeCCCeEEeC-CCccccCCCEEEecccccCCCccC
Q psy2951 1276 NEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYL----DGKGVELNGQKAVVVN-EYLETNVPGVYAGGDIAYAPLHSF 1350 (1466)
Q Consensus 1276 ~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~~~~~----~~~gl~~~~~G~i~vd-~~~~t~~~~v~a~GD~a~~p~~~~ 1350 (1466)
..+.+..+..+|.+++++|..+...+. ..........+....+ ..++++.+.||++||++..++..
T Consensus 83 --------~~~~~~~~~~~~~~~ia~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~vigg~~~a- 153 (196)
T d1gtea4 83 --------ITLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMANTT- 153 (196)
T ss_dssp --------BCHHHHHHTTCCEEEECCCCCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBCSSTTEEECSGGGCSCCCH-
T ss_pred --------eeeehhhccccceeeEEeccccCCccccccccccccccccccceeccccccCCCcccccccccccCCcchH-
Confidence 112223445689999999965443321 1122223333444444 66889999999999998765543
Q ss_pred CCceeeeecHHHHHHHHHHHHHHhc----C----CCCCCCCCccceec
Q psy2951 1351 YNKNASIGHYQLAQYHGRIAALNMV----E----KKTSLSTIPFFWTM 1390 (1466)
Q Consensus 1351 ~~~~~~~~~~~~A~~qa~~aa~~i~----g----~~~~~~~~p~~w~~ 1390 (1466)
..|..+|+.+|..+. + ...+....|+||+.
T Consensus 154 ----------v~a~~~g~~~a~~v~r~~~~~~~~~~~~~p~~~~~~~p 191 (196)
T d1gtea4 154 ----------VESVNDGKQASWYIHKYIQAQYGASVSAKPELPLFYTP 191 (196)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHTTCCCCSSCCBCCCCCG
T ss_pred ----------HHHHHHHhhhehhHhhccHhhCCCCcccCCccccCCCC
Confidence 345666666665543 1 12345567888775
|
| >d1riea_ b.33.1.1 (A:) ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Rieske iron-sulfur protein (ISP) domain: ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.74 E-value=3.4e-09 Score=96.64 Aligned_cols=67 Identities=24% Similarity=0.392 Sum_probs=56.1
Q ss_pred CCeEEEEeCCCCCCCcccCCceecCCEEEccCCCceEECCCCeeecCCCCCCCCeEEEEEEcCeEEEE
Q psy2951 504 TSNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVV 571 (1466)
Q Consensus 504 ~g~~~a~~~~C~H~~~~l~~g~~~~~~~~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~i~~~~~~~~ 571 (1466)
+.+++++...|||.||...+..-+.+.+.|||||++||. +|++..+|+..+|..++.++.++..+++
T Consensus 60 ~~~~~~~~~~CtHlGC~~~~~~~~~~~f~CPCHgs~fd~-~Grv~~GPAp~~L~~p~~~~~~d~~v~i 126 (127)
T d1riea_ 60 KPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDA-SGRIRKGPAPLNLEVPSYEFTSDDMVIV 126 (127)
T ss_dssp STTEEEEECCCTTTSCCCEETCTTTEEEEETTTTEEEET-TCCEEESSCCSCCCCCCEEESSSSEEEE
T ss_pred cceEEEEEeccCCCCceeecccccCCeEEecCcCCcCCC-CCCEEcCCCCCCCCCCcEEEeCCCEEEe
Confidence 577889999999999987654444458999999999998 4999999999999999998876666543
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=98.73 E-value=4.3e-08 Score=106.25 Aligned_cols=162 Identities=21% Similarity=0.260 Sum_probs=113.7
Q ss_pred cEEEECCChHHHHHHHHHhccCCeEEEEeecCccCcc----------------------------c--------------
Q psy2951 736 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQE----------------------------S-------------- 773 (1466)
Q Consensus 736 ~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~----------------------------~-------------- 773 (1466)
.|+|||+|.+|+-+|..|++.|.+|+|+++.+.+... .
T Consensus 4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (251)
T d2i0za1 4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNEDI 83 (251)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhhhhhhhhHHH
Confidence 5899999999999999999999999999987532100 0
Q ss_pred ------------------------cCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEc
Q psy2951 774 ------------------------LGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVG 829 (1466)
Q Consensus 774 ------------------------~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a 829 (1466)
....+.+.+.+.+++.||+++++++|+++.. +++.+..+.+++++.+.+|.||+|
T Consensus 84 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~-~~~~~~~v~~~~g~~i~a~~vI~A 162 (251)
T d2i0za1 84 ITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEY-ENGQTKAVILQTGEVLETNHVVIA 162 (251)
T ss_dssp HHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTCCEEECSCEEEC
T ss_pred HHHHHhcCCccccccccceecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEE-ECCEEEEEEeCCCCeEecCeEEEc
Confidence 0022335566778889999999999999984 456677788999999999999999
Q ss_pred cccccCc---------cccccCCceeeCC--CcEEe-----CCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHH
Q psy2951 830 IGTVLNT---------NYLDGKGVELNGQ--KAVVV-----NEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQ 893 (1466)
Q Consensus 830 ~G~~p~~---------~~~~~~gl~~~~~--G~i~v-----d~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~ 893 (1466)
+|..... .+++..+..+.+. +.+.+ .+...+..|++|++|++....... +.+ ....|.
T Consensus 163 tGg~S~p~~Gs~g~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~l~~~~~~--gG~----~~~~a~ 236 (251)
T d2i0za1 163 VGGKSVPQTGSTGDGYAWAEKAGHTITELFGGGVSVKEINPKEMSSKFTNGLYFCGEVLDIHGYT--GGY----NITSAL 236 (251)
T ss_dssp CCCSSSGGGSCSSHHHHHHHHTTCCEEEEEEEEECGGGEETTTTEESSSBTEEECGGGBSCBCCT--TTH----HHHHHH
T ss_pred cCCccccccCCCcccchhcccceeeeeeeeecccCccccCchhHHHhcCCCcEeeeeEEEccCCc--chH----HHHHHH
Confidence 9964322 2456666554321 11111 122234689999999987554322 211 235788
Q ss_pred HHHHHHHHHhc
Q psy2951 894 YHGRIAALNMV 904 (1466)
Q Consensus 894 ~~g~~aA~~i~ 904 (1466)
..|++++..+.
T Consensus 237 ~~G~~a~~~~~ 247 (251)
T d2i0za1 237 VTGRIAGTTAG 247 (251)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 89999988764
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=98.70 E-value=1.7e-08 Score=114.66 Aligned_cols=116 Identities=12% Similarity=0.085 Sum_probs=75.8
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCc----------------------------------
Q psy2951 593 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK---------------------------------- 638 (1466)
Q Consensus 593 ~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~---------------------------------- 638 (1466)
+..++|+|||||+|||+||..|++.|....|+++|+.+.+++....
T Consensus 2 ~~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 81 (335)
T d2gv8a1 2 PTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSP 81 (335)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCC
T ss_pred CCCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCcccCCcccccccccccccccccccccccc
Confidence 3578999999999999999999998865569999998765421100
Q ss_pred cchhc--------------c--------cCcccccccCHhHhhhCCcEEEEceEEEEeccccc--cEEEccCCC------
Q psy2951 639 LSKQL--------------D--------IKADSILLRTEEFYKDNDIHVIKGKKIISDSELNE--KKIKLQDGT------ 688 (1466)
Q Consensus 639 ~~~~~--------------~--------~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~--~~v~~~~~~------ 688 (1466)
....+ . ....++..++..+.+..+..++++++|+++ +... ..|++.+++
T Consensus 82 ~y~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~yl~~~~~~~~~~I~~~t~V~~v-~~~~~~w~Vt~~~~~~~~~~~ 160 (335)
T d2gv8a1 82 LYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDI-EKKDGSWVVTYKGTKAGSPIS 160 (335)
T ss_dssp CCTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEE-EEETTEEEEEEEESSTTCCEE
T ss_pred cchhhhcCCcHhhhhhhhhcCCcccccCCchHHHHHHHHHHHHHhhhcccCceEEEEE-EecCCEEEEEEEecCCCCeEE
Confidence 00000 0 011122333334445567889999999998 4433 346554321
Q ss_pred EEecCEEEEcCC--CCCCcCCCC
Q psy2951 689 SIDFTKIYLATG--SSPRTISQA 709 (1466)
Q Consensus 689 ~~~~d~lviAtG--~~~~~~~~~ 709 (1466)
...||+||+||| +.|..|.++
T Consensus 161 ~~~~d~VI~AtG~~s~p~~~~~~ 183 (335)
T d2gv8a1 161 KDIFDAVSICNGHYEVPYTGYLY 183 (335)
T ss_dssp EEEESEEEECCCSSSSBCCCBCC
T ss_pred EEEeeEEEEcccccccceecccc
Confidence 456999999999 567777665
|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=98.69 E-value=3.3e-08 Score=92.60 Aligned_cols=115 Identities=24% Similarity=0.278 Sum_probs=86.7
Q ss_pred CcCCCCCCCC-----cEEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHH
Q psy2951 1175 RTISQADGVN-----KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEV 1249 (1466)
Q Consensus 1175 ~~~~~~~g~~-----~v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~ 1249 (1466)
|++.+| |.+ +++|.. .-|+..++ +|+|+|||+|.++++.|..|.+...+|++++|.+..-. .+..
T Consensus 2 R~L~ip-ge~~~~gkGV~yca-~cD~~~~~-----gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~---~~~~ 71 (126)
T d1fl2a2 2 RNMNVP-GEDQYRTKGVTYCP-HCDGPLFK-----GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA---DQVL 71 (126)
T ss_dssp CCCCCT-TTTTTBTTTEESCH-HHHGGGGB-----TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCS---CHHH
T ss_pred CcCCCC-CHHHhcCCCEEEEE-ecChhhcC-----CceEEEEeCCHHHHHHHHhhhccCCceEEEeccccccc---cccc
Confidence 567788 776 788753 33554444 99999999999999999999999999999999874322 2222
Q ss_pred HHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCC---C--CeeecCEEEEeecc
Q psy2951 1250 GERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDN---G--TTIPADLVIVGIGT 1303 (1466)
Q Consensus 1250 ~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~---g--~~i~~D~vv~a~G~ 1303 (1466)
..++....+|++++++++.++. +++..+..+++.| | +++++|.|++++|.
T Consensus 72 ---~~~~~~~~~I~v~~~~~v~~i~-G~~~~v~~v~l~~~~tge~~~l~vdgvFv~IGl 126 (126)
T d1fl2a2 72 ---QDKLRSLKNVDIILNAQTTEVK-GDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGL 126 (126)
T ss_dssp ---HHHHHTCTTEEEESSEEEEEEE-ESSSSEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred ---ccccccccceeEEcCcceEEEE-ccccceeeEEEEECCCCCEEEEECCEEEEEeCC
Confidence 2233334569999999999998 5555788888754 4 36899999999884
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.68 E-value=1.4e-08 Score=105.37 Aligned_cols=151 Identities=20% Similarity=0.187 Sum_probs=99.3
Q ss_pred CCcEEEECCChHHHHHHHHHhccCC-eEEEEeecCccCc--------cccCHHHHHHHHHHHHhcCcEEEccceEEEEEe
Q psy2951 734 ESNVVVIGSSFIGMEAAAFCASKVK-SVTVVGRGAVPFQ--------ESLGKEVGERITKLFESKGVKFVMKANVSSFEK 804 (1466)
Q Consensus 734 ~~~vvVvG~G~~g~e~A~~l~~~g~-~V~lv~~~~~~~~--------~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~ 804 (1466)
+|||+|||+|++|+++|..|+++|. +|+|+++.+.... ..................+..+.....+....
T Consensus 4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~- 82 (196)
T d1gtea4 4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSENE- 82 (196)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBSTTS-
T ss_pred CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhhhhccccccccccccchhhhhhccceeEEeeEEeccce-
Confidence 7999999999999999999999997 5999999986532 12234444455555666777777665442111
Q ss_pred cCCCceEEEECCCCcEEecCEEEEccccccCcccc----ccCCceeeCCCcEEeC-CCCCCCCCCeEEeccccccCCccc
Q psy2951 805 NEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYL----DGKGVELNGQKAVVVN-EYLETNVPGVYAGGDIAYAPLHSF 879 (1466)
Q Consensus 805 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~----~~~gl~~~~~G~i~vd-~~~~t~~~~iya~GD~~~~~~~~~ 879 (1466)
....+..+..+|.+++++|..+...+. ..........+....+ ..++|+.+.+|++||++.....
T Consensus 83 --------~~~~~~~~~~~~~~~ia~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~vigg~~~-- 152 (196)
T d1gtea4 83 --------ITLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMANT-- 152 (196)
T ss_dssp --------BCHHHHHHTTCCEEEECCCCCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBCSSTTEEECSGGGCSCCC--
T ss_pred --------eeeehhhccccceeeEEeccccCCccccccccccccccccccceeccccccCCCcccccccccccCCcch--
Confidence 011122345688999999965443221 1122233334444444 5588999999999999876543
Q ss_pred CCceeeeccHHHHHHHHHHHHHHhc
Q psy2951 880 YNKNASIGHYQLAQYHGRIAALNMV 904 (1466)
Q Consensus 880 ~~~~~~~~~~~~A~~~g~~aA~~i~ 904 (1466)
+..|..+|+.+|..+.
T Consensus 153 ---------av~a~~~g~~~a~~v~ 168 (196)
T d1gtea4 153 ---------TVESVNDGKQASWYIH 168 (196)
T ss_dssp ---------HHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHhhhehhHh
Confidence 3567788888777664
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=98.68 E-value=5.8e-08 Score=105.10 Aligned_cols=165 Identities=22% Similarity=0.234 Sum_probs=115.2
Q ss_pred CcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCcc--------------------------c---------------
Q psy2951 735 SNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQE--------------------------S--------------- 773 (1466)
Q Consensus 735 ~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~--------------------------~--------------- 773 (1466)
..|+|||+|..|+-+|..|++.|.+|+|+++.+.+... .
T Consensus 5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (253)
T d2gqfa1 5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDFI 84 (253)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHHH
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceEecCCccccccCcccCchhhhccChHHHHHHhhhhcccchh
Confidence 47999999999999999999999999999987642100 0
Q ss_pred ----------------------cCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCC-ceEEEECCCCcEEecCEEEEcc
Q psy2951 774 ----------------------LGKEVGERITKLFESKGVKFVMKANVSSFEKNEKN-DVTAANLDNGTTIPADLVIVGI 830 (1466)
Q Consensus 774 ----------------------~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~-~~~~v~~~~g~~i~~D~vi~a~ 830 (1466)
...++.+.+.+.+++.||+++++++|++++..+++ .+..+...++.++.||.||+|+
T Consensus 85 ~~~~~~g~~~~~~~~~~~~~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VIiAt 164 (253)
T d2gqfa1 85 SLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVAT 164 (253)
T ss_dssp HHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEECC
T ss_pred hhhhhcCcceeeecCCccccccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeCEEEEcC
Confidence 01233455677788899999999999999864443 3333455677899999999999
Q ss_pred ccccCcc---------ccccCCceeeC-----CCcEE---eC-CCCCC-CCCCeEEeccccccCCcccCCceeeeccHHH
Q psy2951 831 GTVLNTN---------YLDGKGVELNG-----QKAVV---VN-EYLET-NVPGVYAGGDIAYAPLHSFYNKNASIGHYQL 891 (1466)
Q Consensus 831 G~~p~~~---------~~~~~gl~~~~-----~G~i~---vd-~~~~t-~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~ 891 (1466)
|-..... +++.+++.+-+ .|.+. +| .+|+. ..|++|.+|.+....... +|. ..+.
T Consensus 165 GG~S~p~~G~~g~g~~~a~~~~~~i~~~~~~~~ggv~~~~i~~~t~es~~~~gl~~~ge~ldv~g~~-gg~-----n~~~ 238 (253)
T d2gqfa1 165 GGLSMPGLGATPFGYQIAEQFGIPVIPPRAVTMGGVDTKVISSKTMESNQVSGLYFIGEVLDVTGWL-GGY-----NFQW 238 (253)
T ss_dssp CCSSCGGGTCCSHHHHHHHHTTCCEEEEEEEEEEEECGGGBCTTTCBBSSSTTEEECGGGBSCEECT-TTH-----HHHH
T ss_pred CcccccccCCCchHHHHHHhccccccccccccCCCCcccccCccchhhhcCCCcEEeeeEEEeeeec-CCE-----ehhh
Confidence 9654321 45556655421 13333 33 34665 489999999887654322 221 2368
Q ss_pred HHHHHHHHHHHhcc
Q psy2951 892 AQYHGRIAALNMVE 905 (1466)
Q Consensus 892 A~~~g~~aA~~i~~ 905 (1466)
|...|..|++.|..
T Consensus 239 a~~s~~~~~~~~~~ 252 (253)
T d2gqfa1 239 AWSSAYACALSISR 252 (253)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred hHhHHHHHHHHHhc
Confidence 99999999998854
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=98.67 E-value=6.3e-08 Score=104.80 Aligned_cols=164 Identities=23% Similarity=0.264 Sum_probs=115.4
Q ss_pred CeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcc-------------------------------cc---------
Q psy2951 1206 SNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQE-------------------------------SL--------- 1245 (1466)
Q Consensus 1206 ~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~-------------------------------~~--------- 1245 (1466)
.+|+|||+|..|+-+|..|+++|.+|+|+++.+.+... .+
T Consensus 5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (253)
T d2gqfa1 5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDFI 84 (253)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHHH
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceEecCCccccccCcccCchhhhccChHHHHHHhhhhcccchh
Confidence 46999999999999999999999999999987644100 00
Q ss_pred -----------------------cHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCC-cEEEEEcCCCCeeecCEEEEee
Q psy2951 1246 -----------------------GKEVGERITKLFESKGVKFVMKANVSSFEKNEKN-DVTAANLDNGTTIPADLVIVGI 1301 (1466)
Q Consensus 1246 -----------------------~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g-~~~~v~l~~g~~i~~D~vv~a~ 1301 (1466)
...+.+.|.+.+++.||+++++++|++++..+++ .+..+...++.++.||.||+|+
T Consensus 85 ~~~~~~g~~~~~~~~~~~~~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VIiAt 164 (253)
T d2gqfa1 85 SLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVAT 164 (253)
T ss_dssp HHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEECC
T ss_pred hhhhhcCcceeeecCCccccccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeCEEEEcC
Confidence 0335566778888999999999999999744433 3334556678899999999999
Q ss_pred cccc--Cc-------cccccCCceeeC-----CCeEEe---C-CCcccc-CCCEEEecccccCCCccCCCceeeeecHHH
Q psy2951 1302 GTVL--NT-------NYLDGKGVELNG-----QKAVVV---N-EYLETN-VPGVYAGGDIAYAPLHSFYNKNASIGHYQL 1362 (1466)
Q Consensus 1302 G~~p--~~-------~~~~~~gl~~~~-----~G~i~v---d-~~~~t~-~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~ 1362 (1466)
|-.+ .+ .++++.|+.+-+ .|++.+ | .+|++. .|++|.+|.+....... |+. ..+.
T Consensus 165 GG~S~p~~G~~g~g~~~a~~~~~~i~~~~~~~~ggv~~~~i~~~t~es~~~~gl~~~ge~ldv~g~~--gg~----n~~~ 238 (253)
T d2gqfa1 165 GGLSMPGLGATPFGYQIAEQFGIPVIPPRAVTMGGVDTKVISSKTMESNQVSGLYFIGEVLDVTGWL--GGY----NFQW 238 (253)
T ss_dssp CCSSCGGGTCCSHHHHHHHHTTCCEEEEEEEEEEEECGGGBCTTTCBBSSSTTEEECGGGBSCEECT--TTH----HHHH
T ss_pred CcccccccCCCchHHHHHHhccccccccccccCCCCcccccCccchhhhcCCCcEEeeeEEEeeeec--CCE----ehhh
Confidence 9553 22 256666655421 233433 3 457765 89999999877654432 221 1245
Q ss_pred HHHHHHHHHHHhc
Q psy2951 1363 AQYHGRIAALNMV 1375 (1466)
Q Consensus 1363 A~~qa~~aa~~i~ 1375 (1466)
|-..|..|++.+.
T Consensus 239 a~~s~~~~~~~~~ 251 (253)
T d2gqfa1 239 AWSSAYACALSIS 251 (253)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHh
Confidence 7788888888775
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=98.67 E-value=5e-08 Score=110.02 Aligned_cols=57 Identities=19% Similarity=0.288 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECC--CCc--EEecCEEEEccc
Q psy2951 775 GKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLD--NGT--TIPADLVIVGIG 831 (1466)
Q Consensus 775 ~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~--~g~--~i~~D~vi~a~G 831 (1466)
...+...+.+.+.++|++++++++++++..++++++..+... ++. .|.++.||+|+|
T Consensus 151 ~~~~~~~l~~~a~~~gv~i~~~t~v~~li~d~~G~V~Gv~~~~~~~~~~~i~Ak~VIlAtG 211 (322)
T d1d4ca2 151 GAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAG 211 (322)
T ss_dssp HHHHHHHHHHHHHHTTCEEETTEEEEEEECCSSSCCCEEEEEETTTEEEEEECSEEEECCC
T ss_pred hHHHHHHHHHHHHhcCceEEEeeecccccccccccccceEEEeecccEEEEeCCeEEEcCC
Confidence 356667788888899999999999999876666777666543 222 589999999998
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=98.64 E-value=2.2e-08 Score=113.66 Aligned_cols=41 Identities=15% Similarity=0.233 Sum_probs=35.7
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy2951 1064 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP 1104 (1466)
Q Consensus 1064 ~~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~ 1104 (1466)
.++++|+|||||+|||+||..|++.+...+|+|+||++.++
T Consensus 2 ~~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iG 42 (335)
T d2gv8a1 2 PTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPG 42 (335)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSS
T ss_pred CCCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCC
Confidence 45789999999999999999999887656999999997654
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=98.64 E-value=9.7e-09 Score=113.18 Aligned_cols=117 Identities=18% Similarity=0.176 Sum_probs=80.0
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCC----CC--------CC----Cchh---hc-cC-------
Q psy2951 1065 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY----DR--------VK----LSKQ---LD-IK------- 1117 (1466)
Q Consensus 1065 ~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~----~~--------~~----l~~~---~~-~~------- 1117 (1466)
...+|+|||||++||++|..|++.|+ +++|||+.+..+. .+ +. .+.. +. ..
T Consensus 6 ~~~dV~IIGAG~sGl~~a~~L~~~G~--~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~p~ 83 (298)
T d1w4xa1 6 EEVDVLVVGAGFSGLYALYRLRELGR--SVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYAS 83 (298)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHTTC--CEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCB
T ss_pred CCCCEEEECccHHHHHHHHHHHhCCC--CEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCccccCc
Confidence 35689999999999999999999999 8999999865431 00 00 0000 00 00
Q ss_pred cccccccChhhhccCCc--EEEcCCeEEEee-cCCC--CeEEecCCcEEecCeEEEecCC--CCCcCCCCCCCC
Q psy2951 1118 ADSILLRTEEFYKDNDI--HVIKGKKIISDS-ELNE--KKIKLQDGTSIDFTKIYLATGS--SPRTISQADGVN 1184 (1466)
Q Consensus 1118 ~~~~~~~~~~~~~~~~v--~~~~~~~v~~i~-d~~~--~~v~~~~g~~~~yd~lvlAtG~--~~~~~~~~~g~~ 1184 (1466)
.+.+.....++.+++++ .++++++|+++. |... .+|.+.++.+.++|.||+|||. .|..|.++ +++
T Consensus 84 ~~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~ls~~~~p~~~-~~~ 156 (298)
T d1w4xa1 84 QPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSDALTGALF-KID 156 (298)
T ss_dssp HHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCTTHHHH-TSE
T ss_pred cchHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeecccccccCCccc-ccc
Confidence 11111112345556677 589999999993 2232 4788889999999999999994 77777666 554
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=98.63 E-value=1e-08 Score=118.11 Aligned_cols=43 Identities=16% Similarity=0.265 Sum_probs=37.2
Q ss_pred CCCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCC
Q psy2951 591 SSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD 635 (1466)
Q Consensus 591 ~~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~ 635 (1466)
+.++.++|+|||||+|||+||+.|+++|++ |+++|+++.+++.
T Consensus 26 ~~~~pkkV~IIGaG~aGLsaA~~L~~~G~~--V~vlE~~~~~GG~ 68 (370)
T d2iida1 26 ATSNPKHVVIVGAGMAGLSAAYVLAGAGHQ--VTVLEASERPGGR 68 (370)
T ss_dssp CCSSCCEEEEECCBHHHHHHHHHHHHHTCE--EEEECSSSSSBTT
T ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHCCCC--EEEEeCCCCCCCe
Confidence 445678999999999999999999999987 8899998776653
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=98.61 E-value=9.6e-09 Score=118.43 Aligned_cols=40 Identities=18% Similarity=0.278 Sum_probs=36.2
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCC
Q psy2951 1064 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY 1105 (1466)
Q Consensus 1064 ~~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~ 1105 (1466)
.+.++|+|||||+|||+||..|+++|+ +|+|||+++.++.
T Consensus 28 ~~pkkV~IIGaG~aGLsaA~~L~~~G~--~V~vlE~~~~~GG 67 (370)
T d2iida1 28 SNPKHVVIVGAGMAGLSAAYVLAGAGH--QVTVLEASERPGG 67 (370)
T ss_dssp SSCCEEEEECCBHHHHHHHHHHHHHTC--EEEEECSSSSSBT
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCC--CEEEEeCCCCCCC
Confidence 345799999999999999999999999 9999999987764
|
| >d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.60 E-value=5.8e-08 Score=90.92 Aligned_cols=109 Identities=14% Similarity=0.159 Sum_probs=80.5
Q ss_pred EEecCHHHHHhhcc--cCCCCCcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCcccccccCHHHHHHHHHHHHhCCcEE
Q psy2951 164 FYLRTVEDANNIAP--HITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKF 241 (1466)
Q Consensus 164 ~~~~~~~~~~~~~~--~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i 241 (1466)
|..+.+.++..++. .++++|+|+|||||.+++|.|..|++..++|++++|++.+.. ++.+. .+.+...+|++
T Consensus 14 f~gkGVsyca~CDg~a~~frgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra---~~~~~---~~l~~~~nI~v 87 (130)
T d1vdca2 14 FWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA---SKIMQ---QRALSNPKIDV 87 (130)
T ss_dssp CBTTTEESCHHHHTTSGGGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS---CHHHH---HHHHTCTTEEE
T ss_pred ccCCcEEEEEEecCchHHhCCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccccc---chhhh---hccccCCceEE
Confidence 44455566666664 377899999999999999999999999999999999876532 23333 33345567999
Q ss_pred EcCceEEEEEecCC-CCeEEEEc---C--CCcEEeccEEEEee
Q psy2951 242 VMKANVSSFEKNEK-NDVTAANL---D--NGTTIPADLVIVGI 278 (1466)
Q Consensus 242 ~~~~~v~~i~~~~~-~~~~~v~~---~--~g~~i~~D~Vi~a~ 278 (1466)
++++.+.++.+++. +.+..+.+ . +.+++++|-|++++
T Consensus 88 ~~~~~v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dGvFVaI 130 (130)
T d1vdca2 88 IWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAI 130 (130)
T ss_dssp ECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECS
T ss_pred EeccEEEEEEccCCcccEEEEEEEECCCCCEEEEECCEEEEEC
Confidence 99999999988643 34544433 2 23579999999874
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=98.60 E-value=5.4e-09 Score=118.84 Aligned_cols=114 Identities=15% Similarity=0.063 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCC--CeeecCEEEEeeccccCccccccCCcee-------eC
Q psy2951 1249 VGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG--TTIPADLVIVGIGTVLNTNYLDGKGVEL-------NG 1319 (1466)
Q Consensus 1249 ~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g--~~i~~D~vv~a~G~~p~~~~~~~~gl~~-------~~ 1319 (1466)
+...+.++.++.|++++++++|++|+ .+++++..+...+| ++++||.||+|+|......+|....-.. ..
T Consensus 221 ~~~~~~~l~~~~g~~i~~~~~V~~I~-~~~~~~~v~~~~~~~~~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~ 299 (347)
T d2ivda1 221 LQVLIDALAASLGDAAHVGARVEGLA-REDGGWRLIIEEHGRRAELSVAQVVLAAPAHATAKLLRPLDDALAALVAGIYN 299 (347)
T ss_dssp THHHHHHHHHHHGGGEESSEEEEEEE-CC--CCEEEEEETTEEEEEECSEEEECSCHHHHHHHHTTTCHHHHHHHHTCCB
T ss_pred hHHHHHHHHHHhhcccccCCEEEEEE-EeCCeEEEEEEcCCeEEEEECCEEEECCCHHHHHHhccCCCHHHHHHhhccee
Confidence 33445555666689999999999998 44444332333344 4689999999988643333433211111 01
Q ss_pred CCe---EEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhc
Q psy2951 1320 QKA---VVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMV 1375 (1466)
Q Consensus 1320 ~G~---i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~ 1375 (1466)
.|. +...+...++.|++|++||...... ...++.+|+.+|+.|+
T Consensus 300 ~~~~~~~~~~~~~~~~~p~~~~~G~~~~g~~------------~~~~~~~g~~~a~~~~ 346 (347)
T d2ivda1 300 LGHLERVAAIDAALQRLPGLHLIGNAYKGVG------------LNDCIRNAAQLADALV 346 (347)
T ss_dssp TTHHHHHHHHHHHHHTSTTEEECSTTTSCCS------------HHHHHHHHHHHHHHHC
T ss_pred cCcccceecccccccCCCCEEEecccccCCC------------HHHHHHHHHHHHHHhh
Confidence 110 1111222356899999999654322 1678999999999876
|
| >d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.60 E-value=6e-08 Score=90.85 Aligned_cols=94 Identities=14% Similarity=0.145 Sum_probs=71.2
Q ss_pred CCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCC-Cc
Q psy2951 731 ITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEK-ND 809 (1466)
Q Consensus 731 ~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~-~~ 809 (1466)
+.++|+|+|||+|++|+|.|.+|++...+||+++|++.+.. .+. ...+.+...+|++++++++.++..+.. +.
T Consensus 31 ~frgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra---~~~---~~~~l~~~~nI~v~~~~~v~~i~Gd~~~~~ 104 (130)
T d1vdca2 31 IFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA---SKI---MQQRALSNPKIDVIWNSSVVEAYGDGERDV 104 (130)
T ss_dssp GGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS---CHH---HHHHHHTCTTEEEECSEEEEEEEESSSSSS
T ss_pred HhCCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccccc---chh---hhhccccCCceEEEeccEEEEEEccCCccc
Confidence 45699999999999999999999999999999999986432 222 233444556799999999999984332 34
Q ss_pred eEEEECC---C--CcEEecCEEEEcc
Q psy2951 810 VTAANLD---N--GTTIPADLVIVGI 830 (1466)
Q Consensus 810 ~~~v~~~---~--g~~i~~D~vi~a~ 830 (1466)
+..+.+. + .+++++|.|++++
T Consensus 105 v~~v~l~~~~tge~~~l~~dGvFVaI 130 (130)
T d1vdca2 105 LGGLKVKNVVTGDVSDLKVSGLFFAI 130 (130)
T ss_dssp EEEEEEEETTTCCEEEEECSEEEECS
T ss_pred EEEEEEEECCCCCEEEEECCEEEEEC
Confidence 5555442 2 3479999999874
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=98.59 E-value=1.7e-09 Score=123.23 Aligned_cols=112 Identities=13% Similarity=0.049 Sum_probs=67.6
Q ss_pred HHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCC--cEEecCEEEEccccccCccccccCCce-------eeCCC
Q psy2951 780 ERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG--TTIPADLVIVGIGTVLNTNYLDGKGVE-------LNGQK 850 (1466)
Q Consensus 780 ~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~~~~~~~gl~-------~~~~G 850 (1466)
..+.+..++.|++++++++|++|+..++ ++..+...++ ++++||.||+|+|......++....-. ....|
T Consensus 223 ~~~~~l~~~~g~~i~~~~~V~~I~~~~~-~~~v~~~~~~~~~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~~~ 301 (347)
T d2ivda1 223 VLIDALAASLGDAAHVGARVEGLAREDG-GWRLIIEEHGRRAELSVAQVVLAAPAHATAKLLRPLDDALAALVAGIYNLG 301 (347)
T ss_dssp HHHHHHHHHHGGGEESSEEEEEEECC---CCEEEEEETTEEEEEECSEEEECSCHHHHHHHHTTTCHHHHHHHHTCCBTT
T ss_pred HHHHHHHHHhhcccccCCEEEEEEEeCC-eEEEEEEcCCeEEEEECCEEEECCCHHHHHHhccCCCHHHHHHhhcceecC
Confidence 3444455566999999999999985433 3332333333 478999999999854333333322111 01111
Q ss_pred cE---EeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhc
Q psy2951 851 AV---VVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMV 904 (1466)
Q Consensus 851 ~i---~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~ 904 (1466)
.. ...+...++.|++|++||....... ..++.+|+.+|+.|+
T Consensus 302 ~~~~~~~~~~~~~~~p~~~~~G~~~~g~~~------------~~~~~~g~~~a~~~~ 346 (347)
T d2ivda1 302 HLERVAAIDAALQRLPGLHLIGNAYKGVGL------------NDCIRNAAQLADALV 346 (347)
T ss_dssp HHHHHHHHHHHHHTSTTEEECSTTTSCCSH------------HHHHHHHHHHHHHHC
T ss_pred cccceecccccccCCCCEEEecccccCCCH------------HHHHHHHHHHHHHhh
Confidence 11 1111223678999999998654332 478999999999875
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.59 E-value=5.2e-09 Score=111.85 Aligned_cols=100 Identities=10% Similarity=0.142 Sum_probs=67.5
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCCCccchh-cccCcccccccCHhHhhhCCcEEEEceEEEEe
Q psy2951 596 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVKLSKQ-LDIKADSILLRTEEFYKDNDIHVIKGKKIISD 674 (1466)
Q Consensus 596 ~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i 674 (1466)
++|+|||||||||+||.+|++++...+|+++|+.+.+++. ...... .......+..+...++.+.|++++.++.|..
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~- 79 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGL-VRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVGR- 79 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTH-HHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBTT-
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCce-ehhhccccccccccchhhhhhhhhcCCeeEEeeEEeCc-
Confidence 5999999999999999999998766679999998765432 111111 1133344555566778888999998885421
Q ss_pred ccccccEEEccCCCEEecCEEEEcCCCCCC
Q psy2951 675 SELNEKKIKLQDGTSIDFTKIYLATGSSPR 704 (1466)
Q Consensus 675 ~~~~~~~v~~~~~~~~~~d~lviAtG~~~~ 704 (1466)
+.....+ .-.||+++||||+.+.
T Consensus 80 -~~~~~~l------~~~~d~v~~a~Ga~~~ 102 (230)
T d1cjca2 80 -DVTVQEL------QDAYHAVVLSYGAEDK 102 (230)
T ss_dssp -TBCHHHH------HHHSSEEEECCCCCEE
T ss_pred -cccHHHH------HhhhceEEEEeecccc
Confidence 1110000 1269999999998654
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.59 E-value=9.4e-08 Score=92.79 Aligned_cols=94 Identities=17% Similarity=0.214 Sum_probs=67.2
Q ss_pred CCCcEEEECCChHHHHHHHHHhccC-CeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceE
Q psy2951 733 PESNVVVIGSSFIGMEAAAFCASKV-KSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVT 811 (1466)
Q Consensus 733 ~~~~vvVvG~G~~g~e~A~~l~~~g-~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~ 811 (1466)
.+++|+|||||++|+|+|..+.++| +.|++++|++...++... .....+...+++++.+..+.++.. .+++..
T Consensus 44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~~~~a~~-----~~~~~a~~~~~~~~~~~~~~ei~~-~~~~~~ 117 (153)
T d1gtea3 44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVP-----EEVELAKEEKCEFLPFLSPRKVIV-KGGRIV 117 (153)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCCSCH-----HHHHHHHHTTCEEECSEEEEEEEE-ETTEEE
T ss_pred CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCChhhhccch-----hheeecccccceeEeccccEEEEe-cCCceE
Confidence 4789999999999999999998886 568999998754322221 222345677999999999888873 344333
Q ss_pred EEEC------CCC---------cEEecCEEEEcccc
Q psy2951 812 AANL------DNG---------TTIPADLVIVGIGT 832 (1466)
Q Consensus 812 ~v~~------~~g---------~~i~~D~vi~a~G~ 832 (1466)
.+.. ++| .+|+||.||+|+|.
T Consensus 118 ~v~~~~~e~d~~G~~~~~~g~e~~i~aD~V~~AiG~ 153 (153)
T d1gtea3 118 AVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGS 153 (153)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCE
T ss_pred EEEEEEeeECCCCCEecCCCCEEEEECCEEEECcCc
Confidence 3322 222 36899999999983
|
| >d1q1ra3 d.87.1.1 (A:320-422) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=98.55 E-value=1.5e-07 Score=83.75 Aligned_cols=75 Identities=24% Similarity=0.541 Sum_probs=68.9
Q ss_pred CCCCCCcccccccceeeEEEEeecCCceEEEecccCCCeEEEEEEcCCEEEEEEEECCCHHHHHHHHHHhcCCCcc
Q psy2951 357 SLSTIPFFWTMLFGVGFRFAGYAAGHTQVDIVGDLEALKFTAYYSNADKVLAILTVGMDPLAAQFAEQVLEFPYSS 432 (1466)
Q Consensus 357 ~~~~~p~~~s~~~~~~~~~~G~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~i~~~~~~ 432 (1466)
.+..+|||||+|++..++++|.....+++...|+.+...|..|+.++++++|+..+| .+.....++.+|+.+..+
T Consensus 3 ~~~~vP~FWSdQ~d~~lQ~~G~~~~~d~~v~rg~~~~~~f~~~y~~~~~lvav~~vn-~~~~~~~~r~li~~~~~~ 77 (103)
T d1q1ra3 3 RDEAAPWFWSDQYEIGLKMVGLSEGYDRIIVRGSLAQPDFSVFYLQGDRVLAVDTVN-RPVEFNQSKQIITDRLPV 77 (103)
T ss_dssp CCCCCCEEEEEETTEEEEEEECCTTCSEEEEEEETTTTEEEEEEEETTEEEEEEEES-CHHHHHHHHHHHHTTCCC
T ss_pred CCCCCCcEeeecCCCeeEEEECCCCCceEEEecCCCCCeEEEEEEeCCeEEEEEEeC-CHHHHHHHHHHHHCCCCc
Confidence 356799999999999999999999999999999999999999999999999999999 588889999999987665
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=98.53 E-value=3.5e-08 Score=110.69 Aligned_cols=56 Identities=18% Similarity=0.178 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCCeEEEEcC--CC--cEEeccEEEEeec
Q psy2951 224 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLD--NG--TTIPADLVIVGIG 279 (1466)
Q Consensus 224 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~v~~~--~g--~~i~~D~Vi~a~G 279 (1466)
..+...+.+.+.+.|++++++++++++..++++++..+... ++ ..+.++.||+|||
T Consensus 145 ~~~~~~l~~~a~~~gv~i~~~~~v~~li~~~~G~V~Gv~~~~~~~~~~~i~Ak~VVlAtG 204 (308)
T d1y0pa2 145 AHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATG 204 (308)
T ss_dssp HHHHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCC
T ss_pred HHHHHHHHHHHHhccceEEEeeccchhhhhcccccccccccccccceeEeecCeEEEccC
Confidence 45667777888889999999999999877666778776543 22 3688999999999
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Probab=98.52 E-value=1.7e-07 Score=96.26 Aligned_cols=106 Identities=19% Similarity=0.151 Sum_probs=66.0
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCC-CCCCCCcc----------chhcccCc---ccccccCHhHh-h
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENF-LPYDRVKL----------SKQLDIKA---DSILLRTEEFY-K 659 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~-~~~~~~~~----------~~~~~~~~---~~~~~~~~~~~-~ 659 (1466)
.+||+||||||||++||.+++|.|.+ +.+++.+.. .....+.. ........ .....+..+.+ .
T Consensus 2 ~YDVIVIGgG~AG~eAA~~aAR~G~k--tllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~~ 79 (230)
T d2cula1 2 AYQVLIVGAGFSGAETAFWLAQKGVR--VGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEG 79 (230)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCC--EEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCc--EEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHhh
Confidence 58999999999999999999999999 666665421 11000000 00000000 11111222233 3
Q ss_pred hCCcEEEEceEEEEeccccc--cEEEccCCCEEecCEEEEcCCCCC
Q psy2951 660 DNDIHVIKGKKIISDSELNE--KKIKLQDGTSIDFTKIYLATGSSP 703 (1466)
Q Consensus 660 ~~gv~~~~~~~v~~i~~~~~--~~v~~~~~~~~~~d~lviAtG~~~ 703 (1466)
..+++++.++ |..+...++ ..|.+.+|.++.++.||||||.--
T Consensus 80 ~~nL~i~q~~-V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGTFL 124 (230)
T d2cula1 80 LRPLHLFQAT-ATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFL 124 (230)
T ss_dssp CTTEEEEECC-EEEEEEETTEEEEEEETTSCCEECSEEEECCTTCS
T ss_pred hcCHHHHhcc-ceeeEecccceeeEEeccccEEEEeEEEEccCcce
Confidence 4599999998 655523232 346788899999999999999743
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Probab=98.52 E-value=9.7e-08 Score=98.08 Aligned_cols=109 Identities=22% Similarity=0.179 Sum_probs=68.4
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCC-----CCCCCCc----cchhcccCccc---ccccCh-hhhhcC
Q psy2951 43 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENF-----LPYDRVK----LSKQLDIKADS---ILLRTE-EFYKDN 109 (1466)
Q Consensus 43 ~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~~~~-----~~~~~~~----~~~~~~~~~~~---~~~~~~-~~~~~~ 109 (1466)
.|||+||||||||++||.++++.|.++.|++.+.+.. .|-.... +.......... ...... ......
T Consensus 2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~~~~ 81 (230)
T d2cula1 2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLR 81 (230)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCT
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHhhhc
Confidence 5899999999999999999999999998876543211 0100000 00011111111 111122 223456
Q ss_pred CeEEEeCceEEEecccc-ccEEEecCCcEEecCEEEEccCCCC
Q psy2951 110 DIHVIKGKKIISDSELN-EKKIKLQDGTSIDFTKIYLATGSSP 151 (1466)
Q Consensus 110 ~v~~~~~~~v~~~~~~~-~~~v~~~~~~~~~~d~lviAtG~~~ 151 (1466)
+++++.++.+....+.+ -..|++.+|.++.++.|||+||.--
T Consensus 82 nL~i~q~~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGTFL 124 (230)
T d2cula1 82 PLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFL 124 (230)
T ss_dssp TEEEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCS
T ss_pred CHHHHhccceeeEecccceeeEEeccccEEEEeEEEEccCcce
Confidence 89999988765543333 2447788899999999999999743
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.51 E-value=6.5e-10 Score=120.12 Aligned_cols=146 Identities=13% Similarity=0.044 Sum_probs=88.1
Q ss_pred CcEEEECCchHHHHHHHHHHhcCCC-----CcEEEEcCCCCCCCC----CCCCchhhccCcccccccChhhhccCCcEEE
Q psy2951 1067 DTFIVVGGGPSGATCVETLRQNGFT-----GKLYFITDENFLPYD----RVKLSKQLDIKADSILLRTEEFYKDNDIHVI 1137 (1466)
Q Consensus 1067 ~~vvIVG~G~aGl~aA~~L~~~g~~-----~~i~li~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1137 (1466)
.+|+|||||||||+||..|+++|.. .+|+|+|+.+.++.. .+|... ....+......++...+++++
T Consensus 3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~gi~p~~~----~~~~~~~~~~~~~~~~g~~~~ 78 (239)
T d1lqta2 3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHP----KIKSISKQFEKTAEDPRFRFF 78 (239)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCT----GGGGGHHHHHHHHTSTTEEEE
T ss_pred cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeeeccCcccc----cchhhhhhhhhhhccCCceEE
Confidence 4899999999999999999998732 379999999876631 222111 111222222345667799999
Q ss_pred cCCeEEEeecCCCCeEEecCCcEEecCeEEEecCCCCCcCCCCCCCC------cEEEecCHHHHHhh---hcccCCCCeE
Q psy2951 1138 KGKKIISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRTISQADGVN------KVFYLRTVEDANNI---APHITPESNV 1208 (1466)
Q Consensus 1138 ~~~~v~~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~~~~~~~~~g~~------~v~~~~~~~~~~~l---~~~~~~~~~v 1208 (1466)
.++++... +.+++ ....||++++|||+.+..+..+ |.+ ....+......... ......++++
T Consensus 79 ~~~~v~~~-------~~~~~-~~~~~~~v~~atGa~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 149 (239)
T d1lqta2 79 GNVVVGEH-------VQPGE-LSERYDAVIYAVGAQSRGVPTP-GLPFDDQSGTIPNVGGRINGSPNEYVVGWIKRGPTG 149 (239)
T ss_dssp ESCCBTTT-------BCHHH-HHHHSSEEEECCCCCEECCCCT-TSCCBTTTTBCCEETTEETTCSSEEECTHHHHCSCS
T ss_pred EEEEeccc-------cchhh-hhccccceeeecCCCccccccc-cccccccccchhhhhhhhccccccccceeecCCCEE
Confidence 88854221 11111 1346999999999987777666 543 11111100000000 0001126788
Q ss_pred EEEcCCHHHHHHHHHHh
Q psy2951 1209 VVIGSSFIGMEAAAFCA 1225 (1466)
Q Consensus 1209 vVvG~g~~g~e~a~~l~ 1225 (1466)
+|+|++..+++++..+.
T Consensus 150 vv~g~g~~a~d~a~~~v 166 (239)
T d1lqta2 150 VIGTNKKDAQDTVDTLI 166 (239)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred EEeCCCchHHHHHHHHH
Confidence 88888999999887553
|
| >d1d7ya3 d.87.1.1 (A:309-405) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=98.51 E-value=2.6e-07 Score=81.40 Aligned_cols=76 Identities=17% Similarity=0.277 Sum_probs=66.5
Q ss_pred CCCCCCCcccccccceeeEEEEeecCCceEEEe-cccCCCeEEEEEEcCCEEEEEEEECCCHHHHHHHHHHhcCCCcc
Q psy2951 356 TSLSTIPFFWTMLFGVGFRFAGYAAGHTQVDIV-GDLEALKFTAYYSNADKVLAILTVGMDPLAAQFAEQVLEFPYSS 432 (1466)
Q Consensus 356 ~~~~~~p~~~s~~~~~~~~~~G~~~~~~~~~~~-g~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~i~~~~~~ 432 (1466)
..|..+|||||+|++.+++++|.....++.+.+ +..+...|..++.++|+++|+..+| .+...+.++.+|+.+..+
T Consensus 3 ~~y~~vP~FWSdQ~d~~iq~~G~~~~~~~~v~~~~~~~~~~f~~~y~~~g~lvgv~~vn-~~~~~~~~rrli~~~~~~ 79 (97)
T d1d7ya3 3 PGYAELPWYWSDQGALRIQVAGLASGDEEIVRGEVSLDAPKFTLIELQKGRIVGATCVN-NARDFAPLRRLLAVGAKP 79 (97)
T ss_dssp CCCCCCCEEEEEETTEEEEEEECSCCSEEEEEEECCSSSCEEEEEEEETTEEEEEEEES-CHHHHHHHHHHHHTTCCC
T ss_pred CCCCCCCcEEeccCCCeeEEEecCCCCCEEEEeccCCCCCeEEEEEEeCCEEEEEEEeC-CHHHHHHHHHHHHCCCCC
Confidence 468999999999999999999999887776654 6667788999999999999999999 488888999999877665
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=98.49 E-value=6.1e-07 Score=98.72 Aligned_cols=69 Identities=22% Similarity=0.368 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCccccccCCceee
Q psy2951 775 GKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELN 847 (1466)
Q Consensus 775 ~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~~ 847 (1466)
+..+...+.+.+++.|++++.+++|++++.. ++++ .|.+++| ++.||.||+|+|.-.+ .+++.+|+...
T Consensus 149 p~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~-~~~v-~V~t~~g-~i~a~~VViAaG~~s~-~l~~~lg~~~~ 217 (281)
T d2gf3a1 149 SENCIRAYRELAEARGAKVLTHTRVEDFDIS-PDSV-KIETANG-SYTADKLIVSMGAWNS-KLLSKLNLDIP 217 (281)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEEC-SSCE-EEEETTE-EEEEEEEEECCGGGHH-HHGGGGTEECC
T ss_pred ccccccccccccccccccccCCcEEEEEEEE-CCEE-EEEECCc-EEEcCEEEECCCCcch-hhHHhcCCccc
Confidence 3567778888999999999999999999854 3444 6777776 6999999999997544 56777776543
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.49 E-value=1e-08 Score=109.47 Aligned_cols=98 Identities=10% Similarity=0.134 Sum_probs=64.8
Q ss_pred CcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCC----CCCCCchhhccCcccccccChhhhccCCcEEEcCCeE
Q psy2951 1067 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY----DRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGKKI 1142 (1466)
Q Consensus 1067 ~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 1142 (1466)
++|+|||||||||+||..|++.+...+|+|||+.+.++. ..++.. .....+..+...++...+++++.+++|
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v 77 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDH----PEVKNVINTFTQTARSDRCAFYGNVEV 77 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTC----GGGGGHHHHHHHHHTSTTEEEEBSCCB
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehhhccccc----cccccchhhhhhhhhcCCeeEEeeEEe
Confidence 589999999999999999998876669999999887542 111110 112222233445677789999988854
Q ss_pred EEeecCCCCeEEecCCcEEecCeEEEecCCCCCc
Q psy2951 1143 ISDSELNEKKIKLQDGTSIDFTKIYLATGSSPRT 1176 (1466)
Q Consensus 1143 ~~i~d~~~~~v~~~~g~~~~yd~lvlAtG~~~~~ 1176 (1466)
. .+ +.+.+ -.-.||++++|||+.+..
T Consensus 78 ~----~~---~~~~~-l~~~~d~v~~a~Ga~~~~ 103 (230)
T d1cjca2 78 G----RD---VTVQE-LQDAYHAVVLSYGAEDKS 103 (230)
T ss_dssp T----TT---BCHHH-HHHHSSEEEECCCCCEEC
T ss_pred C----cc---ccHHH-HHhhhceEEEEeeccccc
Confidence 1 11 11110 012599999999996543
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=98.48 E-value=1.5e-07 Score=102.00 Aligned_cols=138 Identities=20% Similarity=0.272 Sum_probs=85.6
Q ss_pred cEEEECCCHhHHHHHHHHhhCCCEEEEEeecCccc--------c-------------------------cccC-------
Q psy2951 184 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF--------Q-------------------------ESLG------- 223 (1466)
Q Consensus 184 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~--------~-------------------------~~~~------- 223 (1466)
.++|||+|+.|+.+|..++++|.+|.++++...-- + ..++
T Consensus 3 DviVIG~G~aG~~aA~~aa~~G~~V~liE~~~~GGtc~n~gciPsK~l~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 82 (259)
T d1onfa1 3 DLIVIGGGSGGMAAARRAARHNAKVALVEKSRLGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPLLVER 82 (259)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESSSTTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHHHHHHH
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCeEEeeCCcchHHHHhhhhcccchhccccccccchhhhhhhhHHhh
Confidence 58999999999999999999999999999753100 0 0000
Q ss_pred -----HHHHHHHHHHHHhCCcEEEcCce-E---EE--EEecCCCCeEEEEcCCCcEEeccEEEEeecccc-----Cccc-
Q psy2951 224 -----KEVGERITKLFESKGVKFVMKAN-V---SS--FEKNEKNDVTAANLDNGTTIPADLVIVGIGTVL-----NTNY- 286 (1466)
Q Consensus 224 -----~~~~~~l~~~l~~~GV~i~~~~~-v---~~--i~~~~~~~~~~v~~~~g~~i~~D~Vi~a~G~~p-----~~~~- 286 (1466)
..+.+.+...+++.||+++.+.. . .. +...++.........+++++.+|.||+|||.+| +.+.
T Consensus 83 ~~~~i~~~~~~~~~~l~~~gV~vi~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~i~a~~iiIATGs~P~~~~~~~~~~ 162 (259)
T d1onfa1 83 RDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVGRSPDTENL 162 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECCCCCBCCBCCTTTTS
T ss_pred hheeeeccccchhhhcccccceEEeeecccccccccccccceeccccccCccceEEEeeeeEEEecCCCCcccccccccc
Confidence 11223345677889999997642 1 11 111110001111122346799999999999998 3333
Q ss_pred -cccCCceecCCccEEECCCCCcCCCCEEEecccccc
Q psy2951 287 -LDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYA 322 (1466)
Q Consensus 287 -l~~~gl~~~~~g~i~vd~~~~t~~~~iya~GD~~~~ 322 (1466)
++..++. +.++++.+|+..+|++.++|++||++..
T Consensus 163 ~l~~~~i~-ts~~~~~~d~~~~t~Vig~gaiGdv~~~ 198 (259)
T d1onfa1 163 KLEKLNVE-TNNNYIVVDENQRTSVNNIYAVGDCCMV 198 (259)
T ss_dssp SCTTTTCC-BSSSCEEECTTCBCSSSSEEECSTTEEE
T ss_pred ccccceee-ecccccccccCCceeEeeEEEEEEeeeh
Confidence 2333443 4467899999999999999999999764
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=98.46 E-value=6.9e-07 Score=98.30 Aligned_cols=70 Identities=20% Similarity=0.340 Sum_probs=55.9
Q ss_pred cHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccCccccccCCceeeC
Q psy2951 1246 GKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELNG 1319 (1466)
Q Consensus 1246 ~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~ 1319 (1466)
+..+...+.+.++++|++++.+++|++++ ..++. ..|.+++| ++.||.||+|+|.-.+ .++...|+....
T Consensus 149 p~~~~~~l~~~a~~~Gv~i~~~~~V~~i~-~~~~~-v~V~t~~g-~i~a~~VViAaG~~s~-~l~~~lg~~~~~ 218 (281)
T d2gf3a1 149 SENCIRAYRELAEARGAKVLTHTRVEDFD-ISPDS-VKIETANG-SYTADKLIVSMGAWNS-KLLSKLNLDIPD 218 (281)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEE-ECSSC-EEEEETTE-EEEEEEEEECCGGGHH-HHGGGGTEECCT
T ss_pred ccccccccccccccccccccCCcEEEEEE-EECCE-EEEEECCc-EEEcCEEEECCCCcch-hhHHhcCCcccc
Confidence 46778889999999999999999999998 34444 45888887 6999999999996544 577777776543
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=98.44 E-value=1.3e-06 Score=97.76 Aligned_cols=57 Identities=19% Similarity=0.303 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECC--CCc--EEecCEEEEcccc
Q psy2951 776 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLD--NGT--TIPADLVIVGIGT 832 (1466)
Q Consensus 776 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~--~g~--~i~~D~vi~a~G~ 832 (1466)
..+...+.+.+++.|+++++++.++++...+++++..+... ++. .+.++.||+|||-
T Consensus 148 ~~i~~~L~~~~~~~g~~i~~~~~v~~l~~~~~g~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG 208 (317)
T d1qo8a2 148 PEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGG 208 (317)
T ss_dssp HHHHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCC
T ss_pred hhhhHHHHHHhhhccceeeeccchhheeecccccceeeEeecccceEEEEeccceEEeccc
Confidence 55677888889999999999999999865667777766543 333 5789999999994
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=98.44 E-value=1.8e-06 Score=97.67 Aligned_cols=126 Identities=13% Similarity=0.107 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEE---CCCCc--EEecCEEEEccccccCc-------c------
Q psy2951 776 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAAN---LDNGT--TIPADLVIVGIGTVLNT-------N------ 837 (1466)
Q Consensus 776 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~---~~~g~--~i~~D~vi~a~G~~p~~-------~------ 837 (1466)
..+...+.+..++.||+++.++.+.++.. +++++..+. ..+|+ .+.++.||+|||--... .
T Consensus 158 ~~i~~~l~~~~~~~gv~i~~~~~~~~li~-~~~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~~~~~~~t~~~~~~tGdg 236 (336)
T d2bs2a2 158 HTMLFAVANECLKLGVSIQDRKEAIALIH-QDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTG 236 (336)
T ss_dssp HHHHHHHHHHHHHHTCEEECSEEEEEEEE-ETTEEEEEEEEETTTCCEEEEECSEEEECCCCCGGGSSSBSSCTTCSCHH
T ss_pred HHHHHHHHHHHHhccccccceeeeeeccc-ccccccceeEEeccCCcEEEEecCeEEEeccccccccccccccccccchh
Confidence 45566677778889999999999988763 345554333 35665 57899999999853211 0
Q ss_pred --ccccCC-ceeeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhc
Q psy2951 838 --YLDGKG-VELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMV 904 (1466)
Q Consensus 838 --~~~~~g-l~~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~ 904 (1466)
+....| ..+.+-++|.++.+.+|+.|++|++||+....... ..+..-.....+...+..+++++.
T Consensus 237 ~~~~~~~G~~~l~~~~~iq~~~~~~t~~~gl~a~G~~~~~~~~~--~~~~~~~~~~e~~~~~~~~ge~~~ 304 (336)
T d2bs2a2 237 TAIALETGIAQLGNMGGIRTDYRGEAKLKGLFSAGEAACWDMHG--FNRLGGNSVSEAVVAGMIVGEYFA 304 (336)
T ss_dssp HHHHHTTSSSCEECCCEEECCTTSBCSSBTEEECGGGEECCSST--TCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhccccceeechhhcccCCcceeccccccccccc--cccchhhccchhhhhcchhHHHHH
Confidence 112234 34566789999999999999999999987543321 111111223455555666665544
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=98.42 E-value=2.8e-07 Score=101.21 Aligned_cols=69 Identities=16% Similarity=0.143 Sum_probs=56.0
Q ss_pred cHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccCccccccCCceee
Q psy2951 1246 GKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELN 1318 (1466)
Q Consensus 1246 ~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~ 1318 (1466)
+..+...|.+.++++|++|+.+++|++|+ .+++...|++++| ++.||.||+|+|.-.. .+++..|+...
T Consensus 150 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~--~~~~~~~V~t~~g-~i~a~~vV~AaG~~s~-~l~~~~G~~~~ 218 (276)
T d1ryia1 150 PYFVCKAYVKAAKMLGAEIFEHTPVLHVE--RDGEALFIKTPSG-DVWANHVVVASGVWSG-MFFKQLGLNNA 218 (276)
T ss_dssp HHHHHHHHHHHHHHTTCEEETTCCCCEEE--CSSSSEEEEETTE-EEEEEEEEECCGGGTH-HHHHHTTCCCC
T ss_pred cccchhHHHHHHHHcCCEEecceEEEeEE--eecceEEEecCCe-EEEcCEEEECCCccHH-HHHhhcCCCcc
Confidence 45677788889999999999999999998 3456677888887 7899999999997654 57777777543
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=2.2e-07 Score=107.34 Aligned_cols=115 Identities=16% Similarity=0.141 Sum_probs=69.1
Q ss_pred HHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCccccccCCce---------eeCCC
Q psy2951 780 ERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVE---------LNGQK 850 (1466)
Q Consensus 780 ~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~---------~~~~G 850 (1466)
....+.+++.|++++++++|++|.. .++++ .|++.+|+++++|.||+|++..--..+.-...+. ....+
T Consensus 211 ~~~~~l~~~~g~~i~~~~~v~~I~~-~~~~v-~v~~~~g~~~~ad~vI~a~p~~~~~~~~~~p~l~~~~~~~~~~~~~~~ 288 (383)
T d2v5za1 211 QVSERIMDLLGDRVKLERPVIYIDQ-TRENV-LVETLNHEMYEAKYVISAIPPTLGMKIHFNPPLPMMRNQMITRVFPPG 288 (383)
T ss_dssp HHHHHHHHHHGGGEEESCCEEEEEC-SSSSE-EEEETTSCEEEESEEEECSCGGGGGGSEEESCCCHHHHHHTTSCCCTT
T ss_pred HHHHHHHHHcCCeEEecCcceEEEe-cCCeE-EEEECCCCEEECCEEEECCCHHHHhhCccCCCCCHHHHHHHHHhccCC
Confidence 3344556678999999999999984 34444 5889999999999999998642111110000000 00111
Q ss_pred c-EEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhcc
Q psy2951 851 A-VVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVE 905 (1466)
Q Consensus 851 ~-i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~ 905 (1466)
. ......+.....+++.+|+....... ....-|+.+|+.+|..|+.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~---------g~~~ga~~~g~~~a~~i~~ 335 (383)
T d2v5za1 289 ILTQYGRVLRQPVDRIYFAGTETATHWS---------GYMEGAVEAGERAAREILH 335 (383)
T ss_dssp HHHHHGGGTTCCBTTEEECSGGGCSSST---------TSHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhcCCcCceEeccccccccCC---------cchHHHHHHHHHHHHHHHH
Confidence 1 11112234456779999876543221 2335688999999988753
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=98.39 E-value=3.7e-09 Score=118.69 Aligned_cols=108 Identities=16% Similarity=0.126 Sum_probs=69.5
Q ss_pred HhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCcccccc--CCc------eeeCCCcEEeC---
Q psy2951 787 ESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDG--KGV------ELNGQKAVVVN--- 855 (1466)
Q Consensus 787 ~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~--~gl------~~~~~G~i~vd--- 855 (1466)
+..+..+..++.+..+... +.. ..+.+.+|+.+.+|.+++++........... ..+ .++..++..++
T Consensus 221 ~~~~~~i~~~~~v~~i~~~-~~~-v~v~~~~g~~~~~d~~~~~~~~~~l~~~~~~~~p~l~~~~~~ai~~~~~~~~~~~~ 298 (347)
T d1b5qa1 221 KIVDPRLQLNKVVREIKYS-PGG-VTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFWPVGVNRYE 298 (347)
T ss_dssp CBCCTTEESSCCEEEEEEC-SSC-EEEEETTSCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHHHSCBTTCCHHH
T ss_pred hhccccccccccccccccc-Ccc-EEEEECCCCEEEcCEEEeecCHHHHhhcccccCCCCCHHHHHHHHhcCCccccccc
Confidence 4557788899999999843 333 4688899999999999998764321110000 000 01122222222
Q ss_pred -CCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhcc
Q psy2951 856 -EYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVE 905 (1466)
Q Consensus 856 -~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~ 905 (1466)
+.++++.++||++||++....+. .++-|+.+|..+|+.|++
T Consensus 299 ~~~~~~~~~~v~~~GD~~~~~~~~---------~~~gA~~sG~~aA~~l~~ 340 (347)
T d1b5qa1 299 YDQLRAPVGRVYFTGEHTSEHYNG---------YVHGAYLSGIDSAEILIN 340 (347)
T ss_dssp HHHHHCCBTTEEECSGGGCSSCTT---------SHHHHHHHHHHHHHHHHH
T ss_pred hhhcccccCCEEEEEccccCcCCC---------HHHHHHHHHHHHHHHHHH
Confidence 23567889999999998654332 346789999999998874
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.38 E-value=5.9e-07 Score=86.99 Aligned_cols=93 Identities=17% Similarity=0.213 Sum_probs=67.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHhcCCC-eEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEE
Q psy2951 1205 ESNVVVIGSSFIGMEAAAFCASKVK-SVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTA 1283 (1466)
Q Consensus 1205 ~~~vvVvG~g~~g~e~a~~l~~~g~-~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~ 1283 (1466)
+++|+|||||++|+|+|..+.+.|+ +|++++|.+..-..... .....+...++.++....+.++. .++++...
T Consensus 45 ~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~~~~a~~-----~~~~~a~~~~~~~~~~~~~~ei~-~~~~~~~~ 118 (153)
T d1gtea3 45 RGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVP-----EEVELAKEEKCEFLPFLSPRKVI-VKGGRIVA 118 (153)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCCSCH-----HHHHHHHHTTCEEECSEEEEEEE-EETTEEEE
T ss_pred CCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCChhhhccch-----hheeecccccceeEeccccEEEE-ecCCceEE
Confidence 6899999999999999999988876 58899987643221111 22234567889999999988887 45555544
Q ss_pred EEc------CCC---------CeeecCEEEEeecc
Q psy2951 1284 ANL------DNG---------TTIPADLVIVGIGT 1303 (1466)
Q Consensus 1284 v~l------~~g---------~~i~~D~vv~a~G~ 1303 (1466)
+.. ++| .+++||.|++|+|.
T Consensus 119 v~~~~~e~d~~G~~~~~~g~e~~i~aD~V~~AiG~ 153 (153)
T d1gtea3 119 VQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGS 153 (153)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCE
T ss_pred EEEEEeeECCCCCEecCCCCEEEEECCEEEECcCc
Confidence 432 233 35899999999983
|
| >d1ulia1 b.33.1.2 (A:17-170) Biphenyl dioxygenase large subunit BphA1, N-terminal domain {Rhodococcus sp. (strain RHA1) [TaxId: 101510]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Ring hydroxylating alpha subunit ISP domain domain: Biphenyl dioxygenase large subunit BphA1, N-terminal domain species: Rhodococcus sp. (strain RHA1) [TaxId: 101510]
Probab=98.38 E-value=7.4e-08 Score=93.21 Aligned_cols=76 Identities=13% Similarity=0.278 Sum_probs=59.8
Q ss_pred hhhhhhhhhhhhhhcCCCCCCCcccccee-ecCCEEEcCCCCceeecCCCccccCCC-------CC----CCCeEEEEEE
Q psy2951 968 PLAAQFAERNIYAVGTKCSHYGAPLVKGS-LGDGRVRCPWHGACFNIATGDIEDFPG-------MD----SLPCYKVTIQ 1035 (1466)
Q Consensus 968 ~~~~~~~~g~~~a~~~~C~h~g~~l~~g~-~~~~~~~cp~h~~~f~~~~g~~~~~p~-------~~----~l~~~~v~~~ 1035 (1466)
.++.+..+|++.|+.+.|+|.|++|..+. -.++.+.||+|||+|+ .+|++...|. .+ .|+.+++.+
T Consensus 65 ilv~R~~~g~i~af~N~C~HRG~~L~~~~~g~~~~l~CpYHgW~f~-~~G~~~~iP~~~~~~~~~~~~~~~L~~~~v~~- 142 (154)
T d1ulia1 65 VMVVRQKNGEIRVFLNQCRHRGMRICRADGGNAKSFTCSYHGWAYD-TGGNLVSVPFEEQAFPGLRKEDWGPLQARVET- 142 (154)
T ss_dssp EEEEECTTSCEEEEESCCTTTCCCSCCSSEEECSCEECTTTCCEEC-TTCCEEECTTHHHHCTTCCGGGSSCCEEEEEE-
T ss_pred eeEEeecccceeeeecccccCCceeeecCCCccceEEeeeceeEEe-cCCccccCCcccccCCCCChHHCCCeEEeEEE-
Confidence 33455668999999999999999998744 4678899999999999 6899987652 22 267778877
Q ss_pred cCCEEEEEcc
Q psy2951 1036 NDDSVVVQAR 1045 (1466)
Q Consensus 1036 ~~~~~~~~~~ 1045 (1466)
-.|.++++..
T Consensus 143 ~~G~Ifv~~d 152 (154)
T d1ulia1 143 YKGLIFANWD 152 (154)
T ss_dssp ETTEEEEECC
T ss_pred ECCEEEEEeC
Confidence 7888888643
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=98.36 E-value=1.4e-06 Score=97.87 Aligned_cols=167 Identities=19% Similarity=0.254 Sum_probs=108.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCc------------------------------------------
Q psy2951 1205 ESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQ------------------------------------------ 1242 (1466)
Q Consensus 1205 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~------------------------------------------ 1242 (1466)
.-.|+|||+|..|+-+|..|++.|.+|.|+++.+..-.
T Consensus 23 t~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG~s~~s~Ggi~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~d 102 (322)
T d1d4ca2 23 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNIND 102 (322)
T ss_dssp ECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSC
T ss_pred cceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCCcccccCchhhhhcccCCCHHHHHHHHHhccccccC
Confidence 45799999999999999999999999999997642200
Q ss_pred ---------------------------------------------ccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecC
Q psy2951 1243 ---------------------------------------------ESLGKEVGERITKLFESKGVKFVMKANVSSFEKNE 1277 (1466)
Q Consensus 1243 ---------------------------------------------~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~ 1277 (1466)
...+..+.+.|.+.+.++|++++++++++++...+
T Consensus 103 ~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~i~~~t~v~~li~d~ 182 (322)
T d1d4ca2 103 PELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDA 182 (322)
T ss_dssp HHHHHHHHHTHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCSHHHHHHHHHHHHHHTTCEEETTEEEEEEECCS
T ss_pred HHHhhhhhhhhhhhhhhhhhhcccccccccccccccccccccccccchhHHHHHHHHHHHHhcCceEEEeeecccccccc
Confidence 00013345667777788999999999999987445
Q ss_pred CCcEEEEEcCC--C--CeeecCEEEEeeccccC-cc--------------------------ccccCC----------ce
Q psy2951 1278 KNDVTAANLDN--G--TTIPADLVIVGIGTVLN-TN--------------------------YLDGKG----------VE 1316 (1466)
Q Consensus 1278 ~g~~~~v~l~~--g--~~i~~D~vv~a~G~~p~-~~--------------------------~~~~~g----------l~ 1316 (1466)
+|++..|...+ + ..+.|+.||+|+|--.. .+ ++..+| +.
T Consensus 183 ~G~V~Gv~~~~~~~~~~~i~Ak~VIlAtGG~~~n~~~~~~~~~~~~~~~~~~~~~~tGdg~~~a~~aGa~~~~~e~~~~~ 262 (322)
T d1d4ca2 183 SGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKNNERVSKYDPKLKGFKATNHPGATGDGLDVALQAGAATRDLEMGGLV 262 (322)
T ss_dssp SSCCCEEEEEETTTEEEEEECSEEEECCCCCTTCHHHHHHHCGGGTTCCBCSCTTCSSHHHHHHHHTTBCEECTTCCEEC
T ss_pred cccccceEEEeecccEEEEeCCeEEEcCCCcccCHHHHHhhCcccccccccCCCCccCHHHHHHHHcCCcceecccceEE
Confidence 67877776532 3 24799999999983211 11 111122 22
Q ss_pred eeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhc
Q psy2951 1317 LNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMV 1375 (1466)
Q Consensus 1317 ~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~ 1375 (1466)
++..+.+ +++...|.+|++||+|+|+..-+. .-++---.+..+.--|++|+.+++
T Consensus 263 ~~~~~~~-~~~~~~~~v~Glya~Ge~~~gvhG---~nrlg~~~~~e~~v~g~~ag~~aa 317 (322)
T d1d4ca2 263 IDTKAEV-KSEKTGKPITGLYAAGEVTGGVHG---ANRLGGNAISDIVTYGRIAGASAA 317 (322)
T ss_dssp CCTTCEE-EBTTTSSEEEEEEECGGGBCSSST---TSCCTTHHHHHHHHHHHHHHHHHH
T ss_pred ecCceEE-EECCCCCEeCceEEchhhcCCccc---cccchhhHHHHHHHHHHHHHHHHH
Confidence 2333322 334455678999999999753211 111111135666666888887765
|
| >d3cx5e1 b.33.1.1 (E:87-215) ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Rieske iron-sulfur protein (ISP) domain: ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.35 E-value=1.1e-07 Score=87.15 Aligned_cols=68 Identities=22% Similarity=0.348 Sum_probs=56.4
Q ss_pred hhhhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEE
Q psy2951 973 FAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVV 1042 (1466)
Q Consensus 973 ~~~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~ 1042 (1466)
..+++++++...|||.||......-..+.+.|||||+.|| .+|++...|+..+|..|+.+++. +.+++
T Consensus 61 ~~~~~~~v~~~~CtHlGC~~~~~~~~~~~~~CPCHgs~fd-~~G~v~~GPA~~~L~~~~~~~~~-~~i~i 128 (129)
T d3cx5e1 61 VKDPQWLIMLGICTHLGCVPIGEAGDFGGWFCPCHGSHYD-ISGRIRKGPAPLNLEIPAYEFDG-DKVIV 128 (129)
T ss_dssp CSSTTEEEEECCCTTTSCCCEEEETTTTEEEETTTTEEEC-TTCCEEESSCCSCCCCCCEEEET-TEEEE
T ss_pred cccccEEEEEeeccCcceeeeeccCcCCeEEEcCcCCCCC-CCCCEEeCCCCCCCCCCcEEEEC-CEEEE
Confidence 3456789999999999998765544447899999999999 58999999999999999999944 45544
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=98.33 E-value=4.1e-07 Score=99.88 Aligned_cols=66 Identities=17% Similarity=0.186 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCccccccCCce
Q psy2951 776 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVE 845 (1466)
Q Consensus 776 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~ 845 (1466)
..+...+.+.++++|++++.+++|++|+. ++....|.+++| ++.||.||+|+|.-.. .+++.+|+.
T Consensus 151 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~--~~~~~~V~t~~g-~i~a~~vV~AaG~~s~-~l~~~~G~~ 216 (276)
T d1ryia1 151 YFVCKAYVKAAKMLGAEIFEHTPVLHVER--DGEALFIKTPSG-DVWANHVVVASGVWSG-MFFKQLGLN 216 (276)
T ss_dssp HHHHHHHHHHHHHTTCEEETTCCCCEEEC--SSSSEEEEETTE-EEEEEEEEECCGGGTH-HHHHHTTCC
T ss_pred ccchhHHHHHHHHcCCEEecceEEEeEEe--ecceEEEecCCe-EEEcCEEEECCCccHH-HHHhhcCCC
Confidence 45667788888999999999999999984 344567888776 7999999999997543 467777764
|
| >d1jm1a_ b.33.1.1 (A:) Rieske protein II (SoxF) {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Rieske iron-sulfur protein (ISP) domain: Rieske protein II (SoxF) species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=98.32 E-value=1.7e-07 Score=93.40 Aligned_cols=67 Identities=21% Similarity=0.448 Sum_probs=56.5
Q ss_pred hhhhhhhcCCCCCCCcccccee-----------ecCCEEEcCCCCceeecC-CCccccCCCCCCCCeEEEEEEc-CCEEE
Q psy2951 975 ERNIYAVGTKCSHYGAPLVKGS-----------LGDGRVRCPWHGACFNIA-TGDIEDFPGMDSLPCYKVTIQN-DDSVV 1041 (1466)
Q Consensus 975 ~g~~~a~~~~C~h~g~~l~~g~-----------~~~~~~~cp~h~~~f~~~-~g~~~~~p~~~~l~~~~v~~~~-~~~~~ 1041 (1466)
+++++|+.+.|||.|+++.... -.++.+.|||||++||++ +|+++..|+..+|+.++++++. ++.++
T Consensus 82 ~~~ivA~s~iCtHlGC~~~~~~~~~~~~~~~~~~~~~~i~CpcHgS~FD~~~gG~v~~GPA~~pLp~v~Le~d~~~g~iy 161 (202)
T d1jm1a_ 82 NGTIFAFSDVCVHLGCQLPAQVIVSSESDPGLYAKGADLHCPCHGSIYALKDGGVVVSGPAPRPLPIVILDYDSSTGDIY 161 (202)
T ss_dssp TTCEEEEESBCTTTCCBCCTTEEESSTTSSEEETTTTEEECTTTCCEEEGGGTSEEEESSCCSCCCBEEEEECTTTCEEE
T ss_pred CCeEEEEeCcCCCCCCcccccccccccccccccCCCCEEEccCcCCEEcCCCCCeEeCCCCCCCcCccEEEEeCCCCeEE
Confidence 4678999999999999986432 246789999999999985 7999999999999999999954 35665
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=4e-07 Score=105.00 Aligned_cols=114 Identities=16% Similarity=0.139 Sum_probs=68.0
Q ss_pred HHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccCccccccCCce---------eeCCC
Q psy2951 1251 ERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVE---------LNGQK 1321 (1466)
Q Consensus 1251 ~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~---------~~~~G 1321 (1466)
....+++++.|++++++++|++|. .+++.+ .|++.||++++||.||++++..--..+.-.-.++ ....+
T Consensus 211 ~~~~~l~~~~g~~i~~~~~v~~I~-~~~~~v-~v~~~~g~~~~ad~vI~a~p~~~~~~~~~~p~l~~~~~~~~~~~~~~~ 288 (383)
T d2v5za1 211 QVSERIMDLLGDRVKLERPVIYID-QTRENV-LVETLNHEMYEAKYVISAIPPTLGMKIHFNPPLPMMRNQMITRVFPPG 288 (383)
T ss_dssp HHHHHHHHHHGGGEEESCCEEEEE-CSSSSE-EEEETTSCEEEESEEEECSCGGGGGGSEEESCCCHHHHHHTTSCCCTT
T ss_pred HHHHHHHHHcCCeEEecCcceEEE-ecCCeE-EEEECCCCEEECCEEEECCCHHHHhhCccCCCCCHHHHHHHHHhccCC
Confidence 344555677899999999999998 444444 5899999999999999987632211110000000 00011
Q ss_pred e-EEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhc
Q psy2951 1322 A-VVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMV 1375 (1466)
Q Consensus 1322 ~-i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~ 1375 (1466)
. -.....++.....|+.+|+....... .+...|..+|+.+|..++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~---------g~~~ga~~~g~~~a~~i~ 334 (383)
T d2v5za1 289 ILTQYGRVLRQPVDRIYFAGTETATHWS---------GYMEGAVEAGERAAREIL 334 (383)
T ss_dssp HHHHHGGGTTCCBTTEEECSGGGCSSST---------TSHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhcCCcCceEeccccccccCC---------cchHHHHHHHHHHHHHHH
Confidence 0 01112234445679988875432211 123668899998888765
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=98.31 E-value=1.2e-07 Score=108.07 Aligned_cols=104 Identities=14% Similarity=0.039 Sum_probs=63.7
Q ss_pred CcEEEccceEEEEEecCCCc----eEEEE-----CCCCcEEecCEEEEccccccCccc--------cccCCce----eeC
Q psy2951 790 GVKFVMKANVSSFEKNEKND----VTAAN-----LDNGTTIPADLVIVGIGTVLNTNY--------LDGKGVE----LNG 848 (1466)
Q Consensus 790 gv~~~~~~~v~~i~~~~~~~----~~~v~-----~~~g~~i~~D~vi~a~G~~p~~~~--------~~~~gl~----~~~ 848 (1466)
+.++++++.|++|....++. ...+. ..+++.+++|.||++++...-..+ +....+. .+.
T Consensus 243 ~~~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~Vi~a~p~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 322 (373)
T d1seza1 243 EDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFLLNFIPEVYGHNY 322 (373)
T ss_dssp TTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHHTSEEESSSSBCCCTTSCCCCCTTH
T ss_pred cceEecCCEEEEEEEeCCcccccccceEEecccCCCCceEEECCEEEECCchHHhhhcccccCCCccchhhhccccccCC
Confidence 56788899999987533221 11122 123457899999999875321111 0000000 001
Q ss_pred CCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhcc
Q psy2951 849 QKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVE 905 (1466)
Q Consensus 849 ~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~ 905 (1466)
++.+.+++.++|+.|+||++||+...+.. ..|+.+|+.||..|+.
T Consensus 323 ~~~~~~~~~~~t~~pglf~aGd~~~g~~~------------~~A~~~G~~aA~~i~~ 367 (373)
T d1seza1 323 DSVLDAIDKMEKNLPGLFYAGNHRGGLSV------------GKALSSGCNAADLVIS 367 (373)
T ss_dssp HHHHHHHHHHHHHSTTEEECCSSSSCSSH------------HHHHHHHHHHHHHHHH
T ss_pred CcEeecccccCCCCCCEEEEecCCCchhH------------HHHHHHHHHHHHHHHH
Confidence 12233445578889999999999876542 5899999999999864
|
| >d2b1xa1 b.33.1.2 (A:1-162) Naphthalene 1,2-dioxygenase alpha subunit, N-domain {Rhodococcus sp. ncimb12038 [TaxId: 92694]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Ring hydroxylating alpha subunit ISP domain domain: Naphthalene 1,2-dioxygenase alpha subunit, N-domain species: Rhodococcus sp. ncimb12038 [TaxId: 92694]
Probab=98.30 E-value=2.2e-07 Score=90.52 Aligned_cols=76 Identities=17% Similarity=0.349 Sum_probs=57.3
Q ss_pred chhhhhhhhhhhhhhcCCCCCCCccccceee-cCCEEEcCCCCceeecCCCccccCCCCCC------------CCeE-EE
Q psy2951 967 DPLAAQFAERNIYAVGTKCSHYGAPLVKGSL-GDGRVRCPWHGACFNIATGDIEDFPGMDS------------LPCY-KV 1032 (1466)
Q Consensus 967 ~~~~~~~~~g~~~a~~~~C~h~g~~l~~g~~-~~~~~~cp~h~~~f~~~~g~~~~~p~~~~------------l~~~-~v 1032 (1466)
..++.+..+|++.|+.+.|+|.|++|..+.. .++.+.||+|||+|+ .+|.+...|..+. |..+ .|
T Consensus 70 ~~vv~R~~dG~i~a~~N~C~HRG~~l~~~~~g~~~~i~CpYHgW~yd-~~G~l~~~P~~~~~~~~~~~~~~~~L~~~~~v 148 (162)
T d2b1xa1 70 QFIVCRDEGGEIRGHLNACRHRGMQVCRAEMGNTSHFRCPYHGWTYS-NTGSLVGVPAGKDAYGNQLKKSDWNLRPMPNL 148 (162)
T ss_dssp EEEEEECTTSCEEEEESSCTTTCCCSCCSSEEECSEEECTTTCCEEE-TTSCEEECTTTTTTTTTCCCGGGGSCCBCSEE
T ss_pred ceEEEecCCcceEEeecccccCcccccccccCccccccCCCceeEEc-CCCCeEECCCcccCCCCCCChhhcCCeeeeeE
Confidence 3344556788999999999999999888754 678899999999999 6999998875433 2333 24
Q ss_pred EEEcCCEEEEEc
Q psy2951 1033 TIQNDDSVVVQA 1044 (1466)
Q Consensus 1033 ~~~~~~~~~~~~ 1044 (1466)
++ ..|.+++..
T Consensus 149 ~~-~~GlIfv~l 159 (162)
T d2b1xa1 149 AS-YKGLIFGSL 159 (162)
T ss_dssp EE-ETTEEEEES
T ss_pred EE-ECCEEEEEc
Confidence 43 567888754
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=98.28 E-value=2e-07 Score=106.11 Aligned_cols=104 Identities=14% Similarity=0.039 Sum_probs=63.0
Q ss_pred CcEEEcCceEEEEEecCCCc----EEEEEc-----CCCCeeecCEEEEeeccccCccc--------cccCCce----eeC
Q psy2951 1261 GVKFVMKANVSSFEKNEKND----VTAANL-----DNGTTIPADLVIVGIGTVLNTNY--------LDGKGVE----LNG 1319 (1466)
Q Consensus 1261 gv~~~~~~~v~~i~~~~~g~----~~~v~l-----~~g~~i~~D~vv~a~G~~p~~~~--------~~~~gl~----~~~ 1319 (1466)
+.+++++++|++|....++. ...+.. .+++++++|.||++++...-..+ +....+. .+.
T Consensus 243 ~~~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~Vi~a~p~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 322 (373)
T d1seza1 243 EDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFLLNFIPEVYGHNY 322 (373)
T ss_dssp TTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHHTSEEESSSSBCCCTTSCCCCCTTH
T ss_pred cceEecCCEEEEEEEeCCcccccccceEEecccCCCCceEEECCEEEECCchHHhhhcccccCCCccchhhhccccccCC
Confidence 56788999999987422211 112222 23467899999999864321110 0000000 000
Q ss_pred CCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcC
Q psy2951 1320 QKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVE 1376 (1466)
Q Consensus 1320 ~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g 1376 (1466)
++.+.+++.++|+.|+||++||+...+.. ..|..+|+.||..|+.
T Consensus 323 ~~~~~~~~~~~t~~pglf~aGd~~~g~~~------------~~A~~~G~~aA~~i~~ 367 (373)
T d1seza1 323 DSVLDAIDKMEKNLPGLFYAGNHRGGLSV------------GKALSSGCNAADLVIS 367 (373)
T ss_dssp HHHHHHHHHHHHHSTTEEECCSSSSCSSH------------HHHHHHHHHHHHHHHH
T ss_pred CcEeecccccCCCCCCEEEEecCCCchhH------------HHHHHHHHHHHHHHHH
Confidence 11223345578899999999998765432 6799999999998874
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=98.28 E-value=1.2e-06 Score=97.59 Aligned_cols=69 Identities=25% Similarity=0.292 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCCCcEEecCEEEEccccccCccccccCCcee
Q psy2951 775 GKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVEL 846 (1466)
Q Consensus 775 ~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~gl~~ 846 (1466)
+..+...+.+.+++.|++++.+++|+++.. +++++..|.+++| +++||.||+|+|.-.+ ++++..|+.+
T Consensus 147 p~~l~~~l~~~a~~~gv~i~~~~~V~~i~~-~~~~v~~V~T~~g-~i~a~~VV~aaG~~s~-~l~~~~g~~l 215 (305)
T d1pj5a2 147 AARAVQLLIKRTESAGVTYRGSTTVTGIEQ-SGGRVTGVQTADG-VIPADIVVSCAGFWGA-KIGAMIGMAV 215 (305)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTE-EEECSEEEECCGGGHH-HHHHTTTCCC
T ss_pred hhhhhhhHHhhhhcccccccCCceEEEEEE-eCCEEEEEeccce-eEECCEEEEecchhHH-HHHHHcCCcc
Confidence 356677788888999999999999999984 4566777888776 7999999999997543 5666666543
|
| >d1riea_ b.33.1.1 (A:) ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Rieske iron-sulfur protein (ISP) domain: ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.27 E-value=1.8e-07 Score=85.04 Aligned_cols=69 Identities=25% Similarity=0.393 Sum_probs=55.3
Q ss_pred hhhhhhhhhcCCCCCCCccccceeecCCEEEcCCCCceeecCCCccccCCCCCCCCeEEEEEEcCCEEEE
Q psy2951 973 FAERNIYAVGTKCSHYGAPLVKGSLGDGRVRCPWHGACFNIATGDIEDFPGMDSLPCYKVTIQNDDSVVV 1042 (1466)
Q Consensus 973 ~~~g~~~a~~~~C~h~g~~l~~g~~~~~~~~cp~h~~~f~~~~g~~~~~p~~~~l~~~~v~~~~~~~~~~ 1042 (1466)
..+.+++++...|||.||......-..+.+.|||||+.|| .+|++...|+..+|+.++.++..+..+.+
T Consensus 58 ~~~~~~~~~~~~CtHlGC~~~~~~~~~~~f~CPCHgs~fd-~~Grv~~GPAp~~L~~p~~~~~~d~~v~i 126 (127)
T d1riea_ 58 VKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYD-ASGRIRKGPAPLNLEVPSYEFTSDDMVIV 126 (127)
T ss_dssp CSSTTEEEEECCCTTTSCCCEETCTTTEEEEETTTTEEEE-TTCCEEESSCCSCCCCCCEEESSSSEEEE
T ss_pred cccceEEEEEeccCCCCceeecccccCCeEEecCcCCcCC-CCCCEEcCCCCCCCCCCcEEEeCCCEEEe
Confidence 3456789999999999996543322236799999999999 57999999999999999999955665543
|
| >d2bmoa1 b.33.1.2 (A:3-152) Nitrobenzene dioxygenase alpha subunit, NBDO-alpha {Comamonas sp. JS765 [TaxId: 58226]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Ring hydroxylating alpha subunit ISP domain domain: Nitrobenzene dioxygenase alpha subunit, NBDO-alpha species: Comamonas sp. JS765 [TaxId: 58226]
Probab=98.27 E-value=2.3e-07 Score=88.73 Aligned_cols=79 Identities=15% Similarity=0.204 Sum_probs=59.2
Q ss_pred ecCchhhhhhhhhhhhhhcCCCCCCCccccceee-cCCEEEcCCCCceeecCCCccccCCCC------------CCCCeE
Q psy2951 964 VGMDPLAAQFAERNIYAVGTKCSHYGAPLVKGSL-GDGRVRCPWHGACFNIATGDIEDFPGM------------DSLPCY 1030 (1466)
Q Consensus 964 ~g~~~~~~~~~~g~~~a~~~~C~h~g~~l~~g~~-~~~~~~cp~h~~~f~~~~g~~~~~p~~------------~~l~~~ 1030 (1466)
.+...++.+..+|++.++.+.|+|.|++|..+.. ..+.+.||+|||+|+ .+|++...|.. ..|..+
T Consensus 56 ~~~~~vv~R~~dg~i~af~N~C~HRG~~L~~~~~g~~~~i~CpYHgW~yd-~~G~l~~~P~~~~~~~~~~~~~~~~L~~~ 134 (150)
T d2bmoa1 56 GVDEVIVSRQNDGSVRAFLNVCRHRGKTLVHAEAGNAKGFVCGYHGWGYG-SNGELQSVPFEKELYGDAIKKKCLGLKEV 134 (150)
T ss_dssp TTEEEEEEECTTSCEEEEESBCTTTCCBCCCSSEEECSEEECTTTCCEEE-TTSCEEECTTHHHHTGGGCCGGGCCCCBC
T ss_pred cCceeEEEecCCCchhhhhhhcccccccccccccccccceEecccceeec-cccchhcCCCccccCCCCCChhhCCCccc
Confidence 3334445566788999999999999999999875 578899999999999 58999877631 225666
Q ss_pred E-EEEEcCCEEEEEc
Q psy2951 1031 K-VTIQNDDSVVVQA 1044 (1466)
Q Consensus 1031 ~-v~~~~~~~~~~~~ 1044 (1466)
+ +++ -.|.++++.
T Consensus 135 ~~ve~-~~G~Ifv~l 148 (150)
T d2bmoa1 135 PRIES-FHGFIYGCF 148 (150)
T ss_dssp SEEEE-ETTEEEEES
T ss_pred ceEEE-ECCEEEEec
Confidence 4 444 467777753
|
| >d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.25 E-value=1.3e-06 Score=91.31 Aligned_cols=128 Identities=20% Similarity=0.222 Sum_probs=81.4
Q ss_pred CcCCCCCCCC--cEEEecCHHHHHhh------cccCCCCCcEEEECCChHHHHHHHHHhcc-------------------
Q psy2951 704 RTISQADGVN--KVFYLRTVEDANNI------APHITPESNVVVIGSSFIGMEAAAFCASK------------------- 756 (1466)
Q Consensus 704 ~~~~~~~g~~--~~~~~~~~~~~~~~------~~~~~~~~~vvVvG~G~~g~e~A~~l~~~------------------- 756 (1466)
+.++|| |.+ +++...++....+- ......+++|+|||+|++|+++|..+.+.
T Consensus 2 R~L~IP-Gedl~gV~~A~dfl~~~N~~p~~~~~~~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~ 80 (225)
T d1cjca1 2 QALDIP-GEELPGVFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQ 80 (225)
T ss_dssp CCCCCT-TTTSTTEEEHHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHT
T ss_pred CCCCCC-CCCCCCcEeHHHHHHHHhCCccccccCccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhc
Confidence 356788 866 77765444432111 01112489999999999999999988872
Q ss_pred --CCeEEEEeecCccCccccCHHHHHH-----------------------------------HHHHH-------------
Q psy2951 757 --VKSVTVVGRGAVPFQESLGKEVGER-----------------------------------ITKLF------------- 786 (1466)
Q Consensus 757 --g~~V~lv~~~~~~~~~~~~~~~~~~-----------------------------------~~~~l------------- 786 (1466)
..+|++++|+...-++.-.+++.+. +.+.+
T Consensus 81 ~g~~~V~iv~RRg~~~~~ft~~Elre~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (225)
T d1cjca1 81 SRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRA 160 (225)
T ss_dssp CCCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred cCCCeEEEEEEcChHhCCCCchhhhcccccCCCcceechhhhccchhhhhhhhhHHHHHHHHHHHHHHhccccccccccc
Confidence 3789999998743222222333221 11111
Q ss_pred -HhcCcEEEccceEEEEEecCCC-ceEEEECC---------------CC--cEEecCEEEEcccc
Q psy2951 787 -ESKGVKFVMKANVSSFEKNEKN-DVTAANLD---------------NG--TTIPADLVIVGIGT 832 (1466)
Q Consensus 787 -~~~gv~~~~~~~v~~i~~~~~~-~~~~v~~~---------------~g--~~i~~D~vi~a~G~ 832 (1466)
..+++.|++...+.++..++++ ++..+++. .| .+++||+||.|+|+
T Consensus 161 ~~~~~i~~~f~~~p~~i~~~~~g~~v~~v~~~~~~~~~~~~~~~~~~tg~~~~ipadlVi~AiGf 225 (225)
T d1cjca1 161 SASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGY 225 (225)
T ss_dssp TCSEEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCE
T ss_pred ccccceEEEeecccccccccCCCCeEEEEEEEEeEECCCCCCCcccCCCcEEEEECCEEEECCCC
Confidence 1356899999999999865543 45544331 12 25899999999996
|
| >d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: L-aspartate oxidase species: Escherichia coli [TaxId: 562]
Probab=98.25 E-value=2.7e-06 Score=94.46 Aligned_cols=92 Identities=22% Similarity=0.363 Sum_probs=67.5
Q ss_pred HHHHHHhcCcEEEccceEEEEEecCC------CceEEEEC---CCCc--EEecCEEEEccccccCc-------c------
Q psy2951 782 ITKLFESKGVKFVMKANVSSFEKNEK------NDVTAANL---DNGT--TIPADLVIVGIGTVLNT-------N------ 837 (1466)
Q Consensus 782 ~~~~l~~~gv~~~~~~~v~~i~~~~~------~~~~~v~~---~~g~--~i~~D~vi~a~G~~p~~-------~------ 837 (1466)
+.+.+++.+++++.++.+.++..+++ +++..+.. .+++ .+.++.||+|+|-.... .
T Consensus 144 ~~~~~~~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~~g~~~~~~ak~VilAtGG~~~~~~~~t~~~~~TGDG 223 (305)
T d1chua2 144 VSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGDG 223 (305)
T ss_dssp HHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGGGSSSBSCGGGCSCHH
T ss_pred HHHHHhccCcceeceeEEEEEEEEcCcccccCceEEEEEEEeCCCCcEEEEeecceEEeeeccccceeccCCCCceeccc
Confidence 45666778999999999988764332 24555543 3443 46899999999843211 0
Q ss_pred --ccccCCceeeCCCcEEeCCCCCCCCCCeEEeccccc
Q psy2951 838 --YLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAY 873 (1466)
Q Consensus 838 --~~~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~ 873 (1466)
++...|.++.+-++|.+|++.+|+.|++||+|+++.
T Consensus 224 ~~mA~~aGa~l~~m~~iq~~~~g~t~~~g~~a~G~~~~ 261 (305)
T d1chua2 224 IAMAWRAGCRVANCGGVMVDDHGRTDVEGLYAIGEVSY 261 (305)
T ss_dssp HHHHHHTTCCEECSCEEECCTTCBCSSBTEEECGGGEE
T ss_pred EeeccccceeeEecceeEECCcccCCCCCceecccEEE
Confidence 234578888888999999999999999999999754
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.22 E-value=7.2e-06 Score=93.28 Aligned_cols=119 Identities=15% Similarity=0.065 Sum_probs=69.0
Q ss_pred HHHHHHHHHhcCcEEEccceEEEEEecCCCceEEEECCC---------------CcEEecCEEEEccccccCc--ccccc
Q psy2951 779 GERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDN---------------GTTIPADLVIVGIGTVLNT--NYLDG 841 (1466)
Q Consensus 779 ~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~~~~---------------g~~i~~D~vi~a~G~~p~~--~~~~~ 841 (1466)
...+.+..++.|+.+..+..+.++...+++.+..+...+ +..+..+..+++.|..... ++++.
T Consensus 144 ~~~l~~~Ae~~g~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~~G~l~k~li~~ 223 (380)
T d2gmha1 144 VSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYKK 223 (380)
T ss_dssp HHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCHHHHHHHHH
T ss_pred HHHHHHHHhhccceeeeecceeeeeeccCCceeecccccccccccccccccccccccccccEEEEeeeCCCcchHHHHhh
Confidence 344555666778888887777777654444443333221 2245678888888865432 12222
Q ss_pred CCce--eeCCCcEEeCCCCCCCCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhcc
Q psy2951 842 KGVE--LNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVE 905 (1466)
Q Consensus 842 ~gl~--~~~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~ 905 (1466)
..+. ....+.+. ..-+...+++..+||++..-++.. .+....|+..|+.||+.+..
T Consensus 224 ~~l~~~~~~~~G~~--sip~l~~~G~lLVGDAAG~vnP~~------g~GI~~Am~SG~lAAeai~~ 281 (380)
T d2gmha1 224 FDLRANCEPQGGFQ--SIPKLTFPGGLLIGCSPGFMNVPK------IKGTHTAMKSGTLAAESIFN 281 (380)
T ss_dssp TTTTTTSCCCCGGG--GCCCCEETTEEECTTTTCCCBTTT------TBCHHHHHHHHHHHHHHHHH
T ss_pred hhhccccccccccc--cccccccCCeeEEeccccccchhh------cCCeeeeeccHHHHHHHHHH
Confidence 2111 11111110 001234689999999998765441 24457899999999999863
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=98.19 E-value=1.1e-06 Score=95.81 Aligned_cols=106 Identities=18% Similarity=0.176 Sum_probs=69.1
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCCCCC---Cchh----h----------ccCcccccc----
Q psy2951 1065 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDRVK---LSKQ----L----------DIKADSILL---- 1123 (1466)
Q Consensus 1065 ~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~~~~---l~~~----~----------~~~~~~~~~---- 1123 (1466)
...||+|||||+||+++|..|+++|+ +|+|||+++........ ++.. + .........
T Consensus 3 ~~~kV~IiGaG~aGl~~A~~L~~~G~--~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 80 (265)
T d2voua1 3 TTDRIAVVGGSISGLTAALMLRDAGV--DVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDAL 80 (265)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETT
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCC--CEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhccCCCcceeEecc
Confidence 45789999999999999999999999 99999997643211110 0000 0 000000000
Q ss_pred ----------cC----------hhhhccCCcEEEcCCeEEEeecCC--CCeEEecCCcEEecCeEEEecCCC
Q psy2951 1124 ----------RT----------EEFYKDNDIHVIKGKKIISDSELN--EKKIKLQDGTSIDFTKIYLATGSS 1173 (1466)
Q Consensus 1124 ----------~~----------~~~~~~~~v~~~~~~~v~~i~d~~--~~~v~~~~g~~~~yd~lvlAtG~~ 1173 (1466)
.. .......++.++.+.+++.+ +.. .-+++++||+++.+|.+|.|.|..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~v~v~~~dG~~~~~d~~v~adG~~ 151 (265)
T d2voua1 81 TGERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGL-SQDSETVQMRFSDGTKAEANWVIGADGGA 151 (265)
T ss_dssp TCCEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEE-EECSSCEEEEETTSCEEEESEEEECCCTT
T ss_pred CCceecccccccccchhHHHHHHHHHhcccceeecCcEEEEE-EeeCCceEEEECCCCEEEEEEEecccccc
Confidence 00 00111235678899999999 643 346778899999999999999963
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.18 E-value=1.6e-05 Score=90.29 Aligned_cols=119 Identities=15% Similarity=0.066 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCC---------------CCeeecCEEEEeeccccCcc--ccc
Q psy2951 1249 VGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDN---------------GTTIPADLVIVGIGTVLNTN--YLD 1311 (1466)
Q Consensus 1249 ~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~---------------g~~i~~D~vv~a~G~~p~~~--~~~ 1311 (1466)
+..++.+..++.|+.+..+..+.++...+++.+..+...+ +..+.++..+++.|...... +++
T Consensus 143 ~~~~l~~~Ae~~g~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~~G~l~k~li~ 222 (380)
T d2gmha1 143 LVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYK 222 (380)
T ss_dssp HHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCHHHHHHHH
T ss_pred HHHHHHHHHhhccceeeeecceeeeeeccCCceeecccccccccccccccccccccccccccEEEEeeeCCCcchHHHHh
Confidence 3445556667777777777777776644444444433321 13456888888888654322 332
Q ss_pred cCCcee--eCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhc
Q psy2951 1312 GKGVEL--NGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMV 1375 (1466)
Q Consensus 1312 ~~gl~~--~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~ 1375 (1466)
...+.. ...+++. .--+...+++..+||+|.+-++.+ .+-...|+..|+.||+.+.
T Consensus 223 ~~~l~~~~~~~~G~~--sip~l~~~G~lLVGDAAG~vnP~~------g~GI~~Am~SG~lAAeai~ 280 (380)
T d2gmha1 223 KFDLRANCEPQGGFQ--SIPKLTFPGGLLIGCSPGFMNVPK------IKGTHTAMKSGTLAAESIF 280 (380)
T ss_dssp HTTTTTTSCCCCGGG--GCCCCEETTEEECTTTTCCCBTTT------TBCHHHHHHHHHHHHHHHH
T ss_pred hhhhccccccccccc--cccccccCCeeEEeccccccchhh------cCCeeeeeccHHHHHHHHH
Confidence 221111 1111110 001223689999999999866543 2345889999999999886
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=98.17 E-value=1.2e-06 Score=95.21 Aligned_cols=108 Identities=17% Similarity=0.195 Sum_probs=68.2
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCC--CCCC-ccch-------------hc-cc----------
Q psy2951 593 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP--YDRV-KLSK-------------QL-DI---------- 645 (1466)
Q Consensus 593 ~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~--~~~~-~~~~-------------~~-~~---------- 645 (1466)
++.+||+||||||||+++|..|+++|++ |+++|+.+... .... .+.. .. ..
T Consensus 2 ~~~~kV~IiGaG~aGl~~A~~L~~~G~~--v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 79 (265)
T d2voua1 2 PTTDRIAVVGGSISGLTAALMLRDAGVD--VDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDA 79 (265)
T ss_dssp CCCSEEEEECCSHHHHHHHHHHHHTTCE--EEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEET
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCC--EEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhccCCCcceeEec
Confidence 4568999999999999999999999987 77788754311 0000 0000 00 00
Q ss_pred -Ccccc-------cc-c---C--HhHhhhCCcEEEEceEEEEecc-ccccEEEccCCCEEecCEEEEcCCCC
Q psy2951 646 -KADSI-------LL-R---T--EEFYKDNDIHVIKGKKIISDSE-LNEKKIKLQDGTSIDFTKIYLATGSS 702 (1466)
Q Consensus 646 -~~~~~-------~~-~---~--~~~~~~~gv~~~~~~~v~~i~~-~~~~~v~~~~~~~~~~d~lviAtG~~ 702 (1466)
....+ .. . . .......++.++.++++..+.. .+..++++++|.++++|.+|.|.|..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~v~~~dG~~~~~d~~v~adG~~ 151 (265)
T d2voua1 80 LTGERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGA 151 (265)
T ss_dssp TTCCEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTT
T ss_pred cCCceecccccccccchhHHHHHHHHHhcccceeecCcEEEEEEeeCCceEEEECCCCEEEEEEEecccccc
Confidence 00000 00 0 0 0111234778888988888832 34566788899999999999999953
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=98.16 E-value=7.4e-06 Score=91.30 Aligned_cols=168 Identities=18% Similarity=0.254 Sum_probs=108.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcC--------------------------------------------
Q psy2951 1205 ESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP-------------------------------------------- 1240 (1466)
Q Consensus 1205 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~-------------------------------------------- 1240 (1466)
.-.|+|||+|..|+-+|..+++.|.+|.|+++.+..
T Consensus 19 ~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~gG~S~~a~Ggi~a~~~~~~~~~g~~d~~~~~~~d~~~~~~~~~d 98 (317)
T d1qo8a2 19 TTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQND 98 (317)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSC
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCCCcccccchhhhhcccCCcHHHHHHHHHHhhccccc
Confidence 346999999999999999999999999999975421
Q ss_pred ------------------------C-----------ccc--------ccHHHHHHHHHHHHhCCcEEEcCceEEEEEecC
Q psy2951 1241 ------------------------F-----------QES--------LGKEVGERITKLFESKGVKFVMKANVSSFEKNE 1277 (1466)
Q Consensus 1241 ------------------------~-----------~~~--------~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~ 1277 (1466)
+ .+. .+..+...|.+.+++.|+++++++.++++...+
T Consensus 99 ~~lv~~~~~~a~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~g~~~g~~i~~~L~~~~~~~g~~i~~~~~v~~l~~~~ 178 (317)
T d1qo8a2 99 IKLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVND 178 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECT
T ss_pred hhHHHHHHhhhhhhhhhHHHhhhcccccccccCcccccccccccccccchhhhHHHHHHhhhccceeeeccchhheeecc
Confidence 0 000 013456667788889999999999999986456
Q ss_pred CCcEEEEEcC--CCC--eeecCEEEEeecccc-Ccc--------------------------ccccCCceeeCCCeEEe-
Q psy2951 1278 KNDVTAANLD--NGT--TIPADLVIVGIGTVL-NTN--------------------------YLDGKGVELNGQKAVVV- 1325 (1466)
Q Consensus 1278 ~g~~~~v~l~--~g~--~i~~D~vv~a~G~~p-~~~--------------------------~~~~~gl~~~~~G~i~v- 1325 (1466)
++++.+|... ++. .+.++.||+|+|--. |.+ ++.+.|..+.+-.++.+
T Consensus 179 ~g~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~~~n~~~~~~~~p~~~~~~~~~~~~~tGdGi~ma~~~Ga~l~~me~vq~~ 258 (317)
T d1qo8a2 179 DHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGMNKEMIAYYRPTMKDMTSSNNITATGDGVLMAKEIGASMTDIDWVQAA 258 (317)
T ss_dssp TSBEEEEEEEETTTEEEEEEEEEEEECCCCCTTCHHHHHHHCGGGTTCEECSCTTCSCHHHHHHHHTTBCEESTTCEEEC
T ss_pred cccceeeEeecccceEEEEeccceEEeccccccCHHHHHHhhhccccccccCCCCcCcHHHHHHHHcCCeecCCcceeec
Confidence 7788877654 342 478999999999421 111 22223433332223332
Q ss_pred -CCC------ccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhc
Q psy2951 1326 -NEY------LETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMV 1375 (1466)
Q Consensus 1326 -d~~------~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~ 1375 (1466)
+.+ ..++.|++||+|+|+..-+. .-++-=-++..+.--|++|+++++
T Consensus 259 ~~~~~~~~d~~~~~i~gl~aaGe~~~g~hG---~nrlggnsl~~~~vfg~~ag~~aa 312 (317)
T d1qo8a2 259 INTTASVLDLQSKPIDGLFAAGEVTGGVHG---YNRLGGNAIADTVVFGRIAGDNAA 312 (317)
T ss_dssp BCTTCEEEBTTSCEEEEEEECSTTBCSSST---TCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred cCCccEEeCCCCCEECCEeehhhhccCCCC---CCccccchHHHHHHHHHHHHHHHH
Confidence 111 12358999999999863221 111111245566666788777654
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=98.12 E-value=1.1e-05 Score=89.51 Aligned_cols=98 Identities=21% Similarity=0.245 Sum_probs=74.2
Q ss_pred CeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCc-----------------------c-------------------
Q psy2951 1206 SNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQ-----------------------E------------------- 1243 (1466)
Q Consensus 1206 ~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~-----------------------~------------------- 1243 (1466)
-.|+|||+|..|+-+|..|++.|.+|.|+++.+..-. .
T Consensus 17 ~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~gG~s~~s~G~~~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~d~ 96 (308)
T d1y0pa2 17 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDP 96 (308)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCH
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcceecCCCCccccchhhhhhhccchHHHHHHHHHhhhhhccch
Confidence 4799999999999999999999999999997642200 0
Q ss_pred ------------------c---------------------------ccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCC
Q psy2951 1244 ------------------S---------------------------LGKEVGERITKLFESKGVKFVMKANVSSFEKNEK 1278 (1466)
Q Consensus 1244 ------------------~---------------------------~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~ 1278 (1466)
. .+..+...+.+.+++.|++++.+++++++...++
T Consensus 97 ~lv~~~~~~~~~~i~~L~~~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~i~~~~~v~~li~~~~ 176 (308)
T d1y0pa2 97 ALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDK 176 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEECTT
T ss_pred HHHHHHHHhhhHHHHHHHHcCCCccccccccccccccccccccccchHHHHHHHHHHHHHhccceEEEeeccchhhhhcc
Confidence 0 0012344455667789999999999999874566
Q ss_pred CcEEEEEcCC--C--CeeecCEEEEeecc
Q psy2951 1279 NDVTAANLDN--G--TTIPADLVIVGIGT 1303 (1466)
Q Consensus 1279 g~~~~v~l~~--g--~~i~~D~vv~a~G~ 1303 (1466)
|++.+|...+ + .++.|+.||+|+|-
T Consensus 177 G~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG 205 (308)
T d1y0pa2 177 GTVKGILVKGMYKGYYWVKADAVILATGG 205 (308)
T ss_dssp SCEEEEEEEETTTEEEEEECSEEEECCCC
T ss_pred cccccccccccccceeEeecCeEEEccCc
Confidence 7888887643 3 25799999999993
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=98.11 E-value=2.1e-06 Score=77.67 Aligned_cols=76 Identities=13% Similarity=0.148 Sum_probs=56.5
Q ss_pred CCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEE
Q psy2951 733 PESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTA 812 (1466)
Q Consensus 733 ~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~ 812 (1466)
++|+|+|||+|++|+++|..|++.+++++++.+.+..... ..++. ....+.+++.... .
T Consensus 31 ~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~~~~~~---------------~~~~~--~~~~i~~~~~~~~----~ 89 (107)
T d2gv8a2 31 VGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDIQ---------------NESLQ--QVPEITKFDPTTR----E 89 (107)
T ss_dssp TTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCSCB---------------CSSEE--EECCEEEEETTTT----E
T ss_pred CCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecCccccc---------------cccce--ecCCeeEEecCCC----E
Confidence 4999999999999999999999999998888777643211 11232 2345677763322 5
Q ss_pred EECCCCcEEe-cCEEEEc
Q psy2951 813 ANLDNGTTIP-ADLVIVG 829 (1466)
Q Consensus 813 v~~~~g~~i~-~D~vi~a 829 (1466)
+.+.||+.++ +|.||+|
T Consensus 90 v~~~dG~~~~~vD~Ii~C 107 (107)
T d2gv8a2 90 IYLKGGKVLSNIDRVIYC 107 (107)
T ss_dssp EEETTTEEECCCSEEEEC
T ss_pred EEEcCCCEEeCCCEEEEC
Confidence 7889999886 7999987
|
| >d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Escherichia coli [TaxId: 562]
Probab=98.07 E-value=2.4e-05 Score=86.43 Aligned_cols=94 Identities=19% Similarity=0.250 Sum_probs=67.6
Q ss_pred HHHHHHHHhcCcEEEccceEEEEEecCCCceEEEE---CCCCc--EEecCEEEEccccc-----cCc--c--------cc
Q psy2951 780 ERITKLFESKGVKFVMKANVSSFEKNEKNDVTAAN---LDNGT--TIPADLVIVGIGTV-----LNT--N--------YL 839 (1466)
Q Consensus 780 ~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v~---~~~g~--~i~~D~vi~a~G~~-----p~~--~--------~~ 839 (1466)
..+.+..+..+|+++.++.+.++.. +++++..+. ..+|+ .+.++.||+|||-- .++ . ++
T Consensus 139 ~~l~~~~~~~~v~i~~~~~v~~Ll~-d~g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~g~~y~~ttn~~~~tGDG~~mA 217 (311)
T d1kf6a2 139 TLFQTSLQFPQIQRFDEHFVLDILV-DDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMA 217 (311)
T ss_dssp HHHHHHTTCTTEEEEETEEEEEEEE-ETTEEEEEEEEETTTTEEEEEECSCEEECCCCCGGGSSSBSSCTTCSCHHHHHH
T ss_pred hHHHHHHccCcceeEeeeEeeeeEe-cCCcceeEEEEEcCCCcEEEEECCEEEEcCCCccccccccCCCCCcCcHHHHHH
Confidence 3445555666899999999999874 456665543 45675 45799999999842 211 1 23
Q ss_pred ccCCceeeCCCcEEeCCCCCCCCCCeEEecccccc
Q psy2951 840 DGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYA 874 (1466)
Q Consensus 840 ~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~~~~ 874 (1466)
..+|.++.+-.+|..+++..+..+++|+.+++..-
T Consensus 218 ~~aGa~l~dme~iq~~p~~~~~~~~~~~~~~~~~~ 252 (311)
T d1kf6a2 218 LSHGVPLRDMGGIETDQNCETRIKGLFAVGECSSV 252 (311)
T ss_dssp HTTTCCEESCCEEECCTTSBCSSBTEEECGGGEEC
T ss_pred HhcccceeecccccccccchhcccCCCcCcceeee
Confidence 44677776667899999999999999999998653
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=98.06 E-value=2.3e-05 Score=88.26 Aligned_cols=124 Identities=13% Similarity=0.116 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEc---CCCC--eeecCEEEEeeccccCc---------------c
Q psy2951 1249 VGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANL---DNGT--TIPADLVIVGIGTVLNT---------------N 1308 (1466)
Q Consensus 1249 ~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l---~~g~--~i~~D~vv~a~G~~p~~---------------~ 1308 (1466)
+...|.+..++.|++++.++.+.++. .+++++..+.. .+|+ ++.++.||+|||-.... .
T Consensus 160 i~~~l~~~~~~~gv~i~~~~~~~~li-~~~~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~~~~~~~t~~~~~~tGdg~~ 238 (336)
T d2bs2a2 160 MLFAVANECLKLGVSIQDRKEAIALI-HQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGTA 238 (336)
T ss_dssp HHHHHHHHHHHHTCEEECSEEEEEEE-EETTEEEEEEEEETTTCCEEEEECSEEEECCCCCGGGSSSBSSCTTCSCHHHH
T ss_pred HHHHHHHHHHhccccccceeeeeecc-cccccccceeEEeccCCcEEEEecCeEEEeccccccccccccccccccchhhh
Confidence 44445666778899999999999887 56677665544 4664 47899999999844211 0
Q ss_pred ccccCCc-eeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhc
Q psy2951 1309 YLDGKGV-ELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMV 1375 (1466)
Q Consensus 1309 ~~~~~gl-~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~ 1375 (1466)
.....|+ .+.+-++|.+|.+++|+.|++|++||++...... ..+..-.....+...+..++++++
T Consensus 239 ~~~~~G~~~l~~~~~iq~~~~~~t~~~gl~a~G~~~~~~~~~--~~~~~~~~~~e~~~~~~~~ge~~~ 304 (336)
T d2bs2a2 239 IALETGIAQLGNMGGIRTDYRGEAKLKGLFSAGEAACWDMHG--FNRLGGNSVSEAVVAGMIVGEYFA 304 (336)
T ss_dssp HHHTTSSSCEECCCEEECCTTSBCSSBTEEECGGGEECCSST--TCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccceeechhhcccCCcceeccccccccccc--cccchhhccchhhhhcchhHHHHH
Confidence 2223553 4556678999999999999999999986543211 111111123445555555555554
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=98.01 E-value=7.3e-06 Score=90.99 Aligned_cols=68 Identities=25% Similarity=0.288 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccCccccccCCceee
Q psy2951 1248 EVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDGKGVELN 1318 (1466)
Q Consensus 1248 ~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~ 1318 (1466)
.+...+.+.+++.|++++.+++|++++ .+++++..|++++| +++||.||+|+|.-.+ ++++..|+.+.
T Consensus 149 ~l~~~l~~~a~~~gv~i~~~~~V~~i~-~~~~~v~~V~T~~g-~i~a~~VV~aaG~~s~-~l~~~~g~~lP 216 (305)
T d1pj5a2 149 RAVQLLIKRTESAGVTYRGSTTVTGIE-QSGGRVTGVQTADG-VIPADIVVSCAGFWGA-KIGAMIGMAVP 216 (305)
T ss_dssp HHHHHHHHHHHHTTCEEECSCCEEEEE-EETTEEEEEEETTE-EEECSEEEECCGGGHH-HHHHTTTCCCC
T ss_pred hhhhhHHhhhhcccccccCCceEEEEE-EeCCEEEEEeccce-eEECCEEEEecchhHH-HHHHHcCCccc
Confidence 455667788889999999999999998 56678888998877 6999999999997644 56666666543
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Probab=97.99 E-value=5.6e-06 Score=92.90 Aligned_cols=126 Identities=19% Similarity=0.196 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCCeEE---EEcCCCc--EEeccEEEEeeccccC-----c--c------
Q psy2951 224 KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTA---ANLDNGT--TIPADLVIVGIGTVLN-----T--N------ 285 (1466)
Q Consensus 224 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~---v~~~~g~--~i~~D~Vi~a~G~~p~-----~--~------ 285 (1466)
..+...|.+..++.+++++..+.+.++...+++.+.. ....+|+ .+.++.||+|||--.. + .
T Consensus 143 ~~i~~~L~~~~~~~~v~~~~~~~~~~l~~~~~~~~~g~~~~~~~~g~~~~~~a~~vIlAtGG~~~ly~~ttn~~~~tGdG 222 (330)
T d1neka2 143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDG 222 (330)
T ss_dssp HHHHHHHHHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEEETTTCCEEEEEESCEEECCCCCGGGSSSBSSCTTCSCHH
T ss_pred HHHHHHHHHHHHhcCCeEEEEEEEEEeeeeccccceeeeeEEccCCcEEEEeccEEEEcCCCccccccCcCCCCccEeHH
Confidence 5666777788888999999999888876544444432 3445564 4779999999994321 1 1
Q ss_pred --ccccCCcee-cCCccEE---------ECCC-CCcCCCCEEEecccccccCccCCCCcce-eccHHHHHHHHHHHHHHh
Q psy2951 286 --YLDGKGVEL-NGQKAVV---------VNEY-LETNVPGVYAGGDIAYAPLHSFYNKNAS-IGHYQLAQYHGRIAALNM 351 (1466)
Q Consensus 286 --~l~~~gl~~-~~~g~i~---------vd~~-~~t~~~~iya~GD~~~~~~~~~~g~~~~-~~~~~~A~~~g~~aa~~i 351 (1466)
++...|..+ |-.+++. +++. .....|++|++|+|+... ++|.... ......++-.|+.|++.+
T Consensus 223 ~~~a~~aGa~l~d~~~~~~~~~~~~~~~~~~~g~~~v~~gl~a~Ge~a~~g---~HganrL~~nsl~~~~v~g~~ag~~~ 299 (330)
T d1neka2 223 VGMAIRAGVPVQDMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVS---VHGANRLGGNSLLDLVVFGRAAGLHL 299 (330)
T ss_dssp HHHHHTTTCCEESECCBEEBCTTCEEEEECSSSCEEEEEEEEECSSSEECS---SSTTSCCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCccccccccccccccceeecccCCCceecccccccCcccccc---cccccccccccHHHHHHHHHHHHHHH
Confidence 112223332 1112222 2222 223478999999997632 1232222 224445566677766666
Q ss_pred c
Q psy2951 352 V 352 (1466)
Q Consensus 352 ~ 352 (1466)
.
T Consensus 300 ~ 300 (330)
T d1neka2 300 Q 300 (330)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: L-aspartate oxidase species: Escherichia coli [TaxId: 562]
Probab=97.93 E-value=1.9e-05 Score=87.33 Aligned_cols=91 Identities=22% Similarity=0.351 Sum_probs=66.0
Q ss_pred HHHHhCCcEEEcCceEEEEEecCC------CcEEEEEc---CCCC--eeecCEEEEeeccccC-----------cc----
Q psy2951 1255 KLFESKGVKFVMKANVSSFEKNEK------NDVTAANL---DNGT--TIPADLVIVGIGTVLN-----------TN---- 1308 (1466)
Q Consensus 1255 ~~~~~~gv~~~~~~~v~~i~~~~~------g~~~~v~l---~~g~--~i~~D~vv~a~G~~p~-----------~~---- 1308 (1466)
+.++..+++++.++.+.++...++ +++..+.. .+++ .+.++.||+|+|-... +.
T Consensus 146 ~~~~~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~~g~~~~~~ak~VilAtGG~~~~~~~~t~~~~~TGDG~~ 225 (305)
T d1chua2 146 KALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGDGIA 225 (305)
T ss_dssp HHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGGGSSSBSCGGGCSCHHHH
T ss_pred HHHhccCcceeceeEEEEEEEEcCcccccCceEEEEEEEeCCCCcEEEEeecceEEeeeccccceeccCCCCceecccEe
Confidence 334566888888888888863222 25666654 3443 4689999999984321 11
Q ss_pred ccccCCceeeCCCeEEeCCCccccCCCEEEecccccC
Q psy2951 1309 YLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYA 1345 (1466)
Q Consensus 1309 ~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~ 1345 (1466)
++..+|..+.+.++|.+|.+++|+.|++||+|+++..
T Consensus 226 mA~~aGa~l~~m~~iq~~~~g~t~~~g~~a~G~~~~~ 262 (305)
T d1chua2 226 MAWRAGCRVANCGGVMVDDHGRTDVEGLYAIGEVSYT 262 (305)
T ss_dssp HHHHTTCCEECSCEEECCTTCBCSSBTEEECGGGEEC
T ss_pred eccccceeeEecceeEECCcccCCCCCceecccEEEe
Confidence 3456788888888999999999999999999997654
|
| >d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.92 E-value=1.7e-05 Score=82.56 Aligned_cols=128 Identities=19% Similarity=0.206 Sum_probs=80.2
Q ss_pred CcCCCCCCCC--cEEEecCHHHHHhhh------cccCCCCeEEEEcCCHHHHHHHHHHhcC-------------------
Q psy2951 1175 RTISQADGVN--KVFYLRTVEDANNIA------PHITPESNVVVIGSSFIGMEAAAFCASK------------------- 1227 (1466)
Q Consensus 1175 ~~~~~~~g~~--~v~~~~~~~~~~~l~------~~~~~~~~vvVvG~g~~g~e~a~~l~~~------------------- 1227 (1466)
|.+++| |.+ ||+.-.++-....-. .....+++|+|||+|++++++|..|.+.
T Consensus 2 R~L~IP-Gedl~gV~~A~dfl~~~N~~p~~~~~~~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~ 80 (225)
T d1cjca1 2 QALDIP-GEELPGVFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQ 80 (225)
T ss_dssp CCCCCT-TTTSTTEEEHHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHT
T ss_pred CCCCCC-CCCCCCcEeHHHHHHHHhCCccccccCccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhc
Confidence 567888 877 888765443322110 1112489999999999999999988873
Q ss_pred -C-CeEEEEcCCCcCCcccccHHHH-----------------------------------HHHHHHHH------------
Q psy2951 1228 -V-KSVTVVGRGAVPFQESLGKEVG-----------------------------------ERITKLFE------------ 1258 (1466)
Q Consensus 1228 -g-~~v~vv~~~~~~~~~~~~~~~~-----------------------------------~~l~~~~~------------ 1258 (1466)
| .+|+++.|....-...-.+++. +.+.+.++
T Consensus 81 ~g~~~V~iv~RRg~~~~~ft~~Elre~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (225)
T d1cjca1 81 SRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRA 160 (225)
T ss_dssp CCCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred cCCCeEEEEEEcChHhCCCCchhhhcccccCCCcceechhhhccchhhhhhhhhHHHHHHHHHHHHHHhccccccccccc
Confidence 3 5899999876321111111111 11222222
Q ss_pred --hCCcEEEcCceEEEEEecCCC-cEEEEEcC---------------CC--CeeecCEEEEeecc
Q psy2951 1259 --SKGVKFVMKANVSSFEKNEKN-DVTAANLD---------------NG--TTIPADLVIVGIGT 1303 (1466)
Q Consensus 1259 --~~gv~~~~~~~v~~i~~~~~g-~~~~v~l~---------------~g--~~i~~D~vv~a~G~ 1303 (1466)
..++.|++.....++...+++ ++..+++. +| .+++||+||.|+|+
T Consensus 161 ~~~~~i~~~f~~~p~~i~~~~~g~~v~~v~~~~~~~~~~~~~~~~~~tg~~~~ipadlVi~AiGf 225 (225)
T d1cjca1 161 SASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGY 225 (225)
T ss_dssp TCSEEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCE
T ss_pred ccccceEEEeecccccccccCCCCeEEEEEEEEeEECCCCCCCcccCCCcEEEEECCEEEECCCC
Confidence 356899999999999843433 56555441 12 35899999999995
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=97.91 E-value=8.3e-07 Score=98.75 Aligned_cols=105 Identities=16% Similarity=0.147 Sum_probs=65.0
Q ss_pred CcEEEcCceEEEEEecCCCcEEEEEcCCCCeeecCEEEEeeccccCcccccc--CCce------eeCCCeEEeC----CC
Q psy2951 1261 GVKFVMKANVSSFEKNEKNDVTAANLDNGTTIPADLVIVGIGTVLNTNYLDG--KGVE------LNGQKAVVVN----EY 1328 (1466)
Q Consensus 1261 gv~~~~~~~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~a~G~~p~~~~~~~--~gl~------~~~~G~i~vd----~~ 1328 (1466)
+..+..++.+..+. ..+ ....|.+.||+.+.+|.+++++........+.. ..++ ++..++..++ +.
T Consensus 224 ~~~i~~~~~v~~i~-~~~-~~v~v~~~~g~~~~~d~~~~~~~~~~l~~~~~~~~p~l~~~~~~ai~~~~~~~~~~~~~~~ 301 (347)
T d1b5qa1 224 DPRLQLNKVVREIK-YSP-GGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFWPVGVNRYEYDQ 301 (347)
T ss_dssp CTTEESSCCEEEEE-ECS-SCEEEEETTSCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHHHSCBTTCCHHHHHH
T ss_pred cccccccccccccc-ccC-ccEEEEECCCCEEEcCEEEeecCHHHHhhcccccCCCCCHHHHHHHHhcCCccccccchhh
Confidence 45677788888887 333 334588999999999999997653221110000 0010 1111222222 34
Q ss_pred ccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcC
Q psy2951 1329 LETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVE 1376 (1466)
Q Consensus 1329 ~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g 1376 (1466)
++++.++||++||+++...+.+ .+.|..+|+.||+.|++
T Consensus 302 ~~~~~~~v~~~GD~~~~~~~~~---------~~gA~~sG~~aA~~l~~ 340 (347)
T d1b5qa1 302 LRAPVGRVYFTGEHTSEHYNGY---------VHGAYLSGIDSAEILIN 340 (347)
T ss_dssp HHCCBTTEEECSGGGCSSCTTS---------HHHHHHHHHHHHHHHHH
T ss_pred cccccCCEEEEEccccCcCCCH---------HHHHHHHHHHHHHHHHH
Confidence 5677899999999876433221 25689999999998874
|
| >d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.91 E-value=7.8e-06 Score=84.70 Aligned_cols=64 Identities=19% Similarity=0.257 Sum_probs=43.7
Q ss_pred CcCCCCCCCC--cEEEecCHHHHHhhc------ccCCCCCcEEEECCChHHHHHHHHHh--------------------c
Q psy2951 704 RTISQADGVN--KVFYLRTVEDANNIA------PHITPESNVVVIGSSFIGMEAAAFCA--------------------S 755 (1466)
Q Consensus 704 ~~~~~~~g~~--~~~~~~~~~~~~~~~------~~~~~~~~vvVvG~G~~g~e~A~~l~--------------------~ 755 (1466)
+.++|| |.+ +++...++....+-. .....+++|+|||+|++|+++|..+. +
T Consensus 2 R~L~IP-Gedl~gV~~A~dfl~~~N~~p~~~~~~~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r 80 (216)
T d1lqta1 2 RMLNIP-GEDLPGSIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRP 80 (216)
T ss_dssp CCCCCT-TTTSTTEEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTT
T ss_pred CCCCCC-CCCCCCcEeHHHHHHHHhCCccccccCccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhh
Confidence 456788 876 777655444322111 11124899999999999999998776 3
Q ss_pred c-CCeEEEEeecCc
Q psy2951 756 K-VKSVTVVGRGAV 768 (1466)
Q Consensus 756 ~-g~~V~lv~~~~~ 768 (1466)
. ..+|++++|+..
T Consensus 81 ~~~~~V~iv~RRg~ 94 (216)
T d1lqta1 81 RGIQEVVIVGRRGP 94 (216)
T ss_dssp CCCCEEEEECSSCG
T ss_pred cCCceEEEEEECCh
Confidence 3 467999998764
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=97.79 E-value=1.9e-05 Score=71.14 Aligned_cols=89 Identities=12% Similarity=0.131 Sum_probs=61.4
Q ss_pred EEEecCHHHHHhhhcccCCCCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEE
Q psy2951 1186 VFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFV 1265 (1466)
Q Consensus 1186 v~~~~~~~~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~ 1265 (1466)
+++...+.+...++ +|+|+|||+|.+|+++|..|.+.+.+++++.+.+..... ..++.
T Consensus 18 i~Hs~~y~~~~~f~-----gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~~~~~~---------------~~~~~-- 75 (107)
T d2gv8a2 18 VLHSSLFREPELFV-----GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDIQ---------------NESLQ-- 75 (107)
T ss_dssp EEEGGGCCCGGGGT-----TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCSCB---------------CSSEE--
T ss_pred EEECCcCcchhhcC-----CCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecCccccc---------------cccce--
Confidence 45444444443344 899999999999999999999998888877766533211 11222
Q ss_pred cCceEEEEEecCCCcEEEEEcCCCCeee-cCEEEEe
Q psy2951 1266 MKANVSSFEKNEKNDVTAANLDNGTTIP-ADLVIVG 1300 (1466)
Q Consensus 1266 ~~~~v~~i~~~~~g~~~~v~l~~g~~i~-~D~vv~a 1300 (1466)
....+.+++ ..++ .+.+.||+.+. .|.||+|
T Consensus 76 ~~~~i~~~~--~~~~--~v~~~dG~~~~~vD~Ii~C 107 (107)
T d2gv8a2 76 QVPEITKFD--PTTR--EIYLKGGKVLSNIDRVIYC 107 (107)
T ss_dssp EECCEEEEE--TTTT--EEEETTTEEECCCSEEEEC
T ss_pred ecCCeeEEe--cCCC--EEEEcCCCEEeCCCEEEEC
Confidence 234577776 2333 48899999886 7999986
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=97.73 E-value=8e-06 Score=88.56 Aligned_cols=35 Identities=17% Similarity=0.465 Sum_probs=31.0
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCC
Q psy2951 593 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE 629 (1466)
Q Consensus 593 ~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~ 629 (1466)
...+||+|||||++||++|+.|+++|++ |+++|++
T Consensus 4 ~~~~kVvVIGaGiaGl~~A~~L~~~G~~--V~vier~ 38 (268)
T d1c0pa1 4 HSQKRVVVLGSGVIGLSSALILARKGYS--VHILARD 38 (268)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHHHTTCE--EEEEESS
T ss_pred CCCCcEEEECccHHHHHHHHHHHHCCCC--EEEEeCC
Confidence 4567999999999999999999999998 7777775
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=97.69 E-value=1.3e-05 Score=84.91 Aligned_cols=61 Identities=18% Similarity=0.229 Sum_probs=44.9
Q ss_pred CCcCCCCCCCC----cEEEecCHHHHHhhcccCCCCCcEEEECCChHHHHHHHHHhccCCeEEEEeecCc
Q psy2951 703 PRTISQADGVN----KVFYLRTVEDANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAV 768 (1466)
Q Consensus 703 ~~~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~ 768 (1466)
|+.|++| |.+ .+++...... .....++|+|+|||+|.+|+++|..+++.+.+++++.+.+.
T Consensus 2 P~iP~~p-G~e~F~G~v~HS~~~~~----~~~~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~~ 66 (235)
T d1w4xa2 2 PQLPNFP-GLKDFAGNLYHTGNWPH----EPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPH 66 (235)
T ss_dssp CCCCCCT-TGGGCCSEEEEGGGCCS----SCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred CCCCCCC-ChhhCCCcEEecCcCCC----CCCCCCCCEEEEECCCccHHHHHHHHHhhhccccccccccc
Confidence 7889998 887 3333222110 11123599999999999999999999999999988877753
|
| >d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.62 E-value=4.4e-05 Score=78.84 Aligned_cols=63 Identities=21% Similarity=0.275 Sum_probs=43.5
Q ss_pred CcCCCCCCCC--cEEEecCHHHHHhhhc------ccCCCCeEEEEcCCHHHHHHHHHHh--------------------c
Q psy2951 1175 RTISQADGVN--KVFYLRTVEDANNIAP------HITPESNVVVIGSSFIGMEAAAFCA--------------------S 1226 (1466)
Q Consensus 1175 ~~~~~~~g~~--~v~~~~~~~~~~~l~~------~~~~~~~vvVvG~g~~g~e~a~~l~--------------------~ 1226 (1466)
|.+++| |.+ ||+.-.++-....-.. ....+++|+|||+|++++++|..|. +
T Consensus 2 R~L~IP-Gedl~gV~~A~dfl~~~N~~p~~~~~~~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r 80 (216)
T d1lqta1 2 RMLNIP-GEDLPGSIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRP 80 (216)
T ss_dssp CCCCCT-TTTSTTEEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTT
T ss_pred CCCCCC-CCCCCCcEeHHHHHHHHhCCccccccCccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhh
Confidence 567888 877 8887654433221111 1123799999999999999998775 3
Q ss_pred CC-CeEEEEcCCC
Q psy2951 1227 KV-KSVTVVGRGA 1238 (1466)
Q Consensus 1227 ~g-~~v~vv~~~~ 1238 (1466)
.| .+|+++.|..
T Consensus 81 ~~~~~V~iv~RRg 93 (216)
T d1lqta1 81 RGIQEVVIVGRRG 93 (216)
T ss_dssp CCCCEEEEECSSC
T ss_pred cCCceEEEEEECC
Confidence 44 4799999875
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=97.62 E-value=4.9e-05 Score=82.62 Aligned_cols=38 Identities=16% Similarity=0.275 Sum_probs=32.4
Q ss_pred CCCeEEEEcCchHHHHHHHHHHH-cCCCccEEEEcCCCCCC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQ-NGFTGKLYFITDENFLP 633 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~-~g~~~~v~~~~~~~~~~ 633 (1466)
..+||+|||||||||+||+.|++ .|++ |+++|+.+.++
T Consensus 32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~--V~vlE~~~~~G 70 (278)
T d1rp0a1 32 AETDVVVVGAGSAGLSAAYEISKNPNVQ--VAIIEQSVSPG 70 (278)
T ss_dssp TEEEEEEECCSHHHHHHHHHHHTSTTSC--EEEEESSSSCC
T ss_pred cCCCEEEECCCHHHHHHHHHHHHccCCe--EEEEecCCCCC
Confidence 46899999999999999999987 5998 78888876544
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=97.59 E-value=4.7e-05 Score=80.50 Aligned_cols=59 Identities=17% Similarity=0.242 Sum_probs=44.3
Q ss_pred CCcCCCCCCCC---c-EEEecCHH-HHHhhhcccCCCCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCC
Q psy2951 1174 PRTISQADGVN---K-VFYLRTVE-DANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGA 1238 (1466)
Q Consensus 1174 ~~~~~~~~g~~---~-v~~~~~~~-~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~ 1238 (1466)
|+.|.+| |++ | +++...++ +... -.+|+|+|||+|.+|+++|..+.+.+.+++++.+.+
T Consensus 2 P~iP~~p-G~e~F~G~v~HS~~~~~~~~~-----~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~ 65 (235)
T d1w4xa2 2 PQLPNFP-GLKDFAGNLYHTGNWPHEPVD-----FSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP 65 (235)
T ss_dssp CCCCCCT-TGGGCCSEEEEGGGCCSSCCC-----CBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred CCCCCCC-ChhhCCCcEEecCcCCCCCCC-----CCCCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence 7888898 988 3 33333231 1111 248999999999999999999999999988887664
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=97.59 E-value=1.3e-05 Score=87.36 Aligned_cols=38 Identities=13% Similarity=0.190 Sum_probs=31.8
Q ss_pred CCCCCCcEEEECCchHHHHHHHHHHh-cCCCCcEEEEcC
Q psy2951 39 SSGNKDTFIVVGGGPSGATCVETLRQ-NGFTGKLYFITD 76 (1466)
Q Consensus 39 ~~~~~~dVvIIGgG~AGl~aA~~l~~-~g~~v~i~~~~~ 76 (1466)
+....+||+|||||||||+||++|++ .|++|.|+|..+
T Consensus 29 ~~~~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~ 67 (278)
T d1rp0a1 29 ITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSV 67 (278)
T ss_dssp HHHTEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSS
T ss_pred ccccCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCC
Confidence 33346899999999999999999987 599999987554
|
| >d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Escherichia coli [TaxId: 562]
Probab=97.51 E-value=0.00021 Score=78.59 Aligned_cols=91 Identities=20% Similarity=0.265 Sum_probs=68.3
Q ss_pred HHHHHHhCCcEEEcCceEEEEEecCCCcEEEEE---cCCCC--eeecCEEEEeeccc-----cCc--c--------cccc
Q psy2951 1253 ITKLFESKGVKFVMKANVSSFEKNEKNDVTAAN---LDNGT--TIPADLVIVGIGTV-----LNT--N--------YLDG 1312 (1466)
Q Consensus 1253 l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~---l~~g~--~i~~D~vv~a~G~~-----p~~--~--------~~~~ 1312 (1466)
+.+..+..+|+++.++.+.++. .+++++.++. ..+|+ .+.|+.||+|||-. ..+ . ++..
T Consensus 141 l~~~~~~~~v~i~~~~~v~~Ll-~d~g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~g~~y~~ttn~~~~tGDG~~mA~~ 219 (311)
T d1kf6a2 141 FQTSLQFPQIQRFDEHFVLDIL-VDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALS 219 (311)
T ss_dssp HHHHTTCTTEEEEETEEEEEEE-EETTEEEEEEEEETTTTEEEEEECSCEEECCCCCGGGSSSBSSCTTCSCHHHHHHHT
T ss_pred HHHHHccCcceeEeeeEeeeeE-ecCCcceeEEEEEcCCCcEEEEECCEEEEcCCCccccccccCCCCCcCcHHHHHHHh
Confidence 4444555689999999999997 5677877665 45674 45899999999832 111 1 3455
Q ss_pred CCceeeCCCeEEeCCCccccCCCEEEeccccc
Q psy2951 1313 KGVELNGQKAVVVNEYLETNVPGVYAGGDIAY 1344 (1466)
Q Consensus 1313 ~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~ 1344 (1466)
+|..+.+-.+|.++.+..+..+++|+.+++..
T Consensus 220 aGa~l~dme~iq~~p~~~~~~~~~~~~~~~~~ 251 (311)
T d1kf6a2 220 HGVPLRDMGGIETDQNCETRIKGLFAVGECSS 251 (311)
T ss_dssp TTCCEESCCEEECCTTSBCSSBTEEECGGGEE
T ss_pred cccceeecccccccccchhcccCCCcCcceee
Confidence 78887767789999999999999999999765
|
| >d1m6ia3 d.87.1.1 (A:478-608) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.50 E-value=0.00013 Score=63.88 Aligned_cols=37 Identities=16% Similarity=0.037 Sum_probs=34.1
Q ss_pred eEEEEEEeCCEEEEEEEecCcHHHHHHHHHHHcCCCC
Q psy2951 1418 KFTAYYSNADKVLAILTVGMDPLAAQFAERIKMQKYI 1454 (1466)
Q Consensus 1418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1454 (1466)
+-+.||++|+++||++++|-...+..+|++|+++...
T Consensus 85 KGVIFYLrd~~VVGVLLWNvFnrm~iAR~iI~~~~~~ 121 (131)
T d1m6ia3 85 KGVIFYLRDKVVVGIVLWNIFNRMPIARKIIKDGEQH 121 (131)
T ss_dssp EEEEEEEETTEEEEEEEESCCSCHHHHHHHHHHCCBC
T ss_pred ceEEEEecCCcEEEEEEecccCccHHHHHHHHcCCcc
Confidence 4688999999999999999999999999999998755
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.50 E-value=3.9e-05 Score=84.28 Aligned_cols=34 Identities=24% Similarity=0.460 Sum_probs=30.3
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 630 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~ 630 (1466)
+.+|+||||||+||++|..|+++|++ |+++|+.+
T Consensus 2 k~~V~IvGaGp~Gl~~A~~L~~~G~~--v~vlE~~~ 35 (292)
T d1k0ia1 2 KTQVAIIGAGPSGLLLGQLLHKAGID--NVILERQT 35 (292)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHTCC--EEEECSSC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCC--EEEEeCCC
Confidence 46899999999999999999999988 77888763
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.47 E-value=8.7e-05 Score=81.03 Aligned_cols=37 Identities=22% Similarity=0.471 Sum_probs=30.5
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFL 632 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~ 632 (1466)
+.||+|||||||||++|+.|+++|.. .|+++|+.+.+
T Consensus 1 ~~~V~IvGaG~aGl~~A~~L~~~Gi~-~V~V~Er~~~~ 37 (288)
T d3c96a1 1 PIDILIAGAGIGGLSCALALHQAGIG-KVTLLESSSEI 37 (288)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCS-EEEEEESSSSC
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCC-eEEEEeCCCCC
Confidence 36999999999999999999999963 36777776543
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.42 E-value=5.3e-05 Score=82.06 Aligned_cols=59 Identities=14% Similarity=0.135 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhcCcEEEccceEEEEEecCC-CceEEEECCCCcEEecCEEEEccccccC
Q psy2951 776 KEVGERITKLFESKGVKFVMKANVSSFEKNEK-NDVTAANLDNGTTIPADLVIVGIGTVLN 835 (1466)
Q Consensus 776 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~-~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 835 (1466)
..+.+.+.+.+++.|++++++++|++|...++ +++..+ +.+|+++.||.||....+.|+
T Consensus 236 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v-~~~g~~~~ad~VI~~~s~~~~ 295 (297)
T d2bcgg1 236 GELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGV-KTKLGTFKAPLVIADPTYFPE 295 (297)
T ss_dssp THHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEE-EETTEEEECSCEEECGGGCGG
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEE-EcCCEEEECCEEEEChhhccC
Confidence 44677888899999999999999999965443 445444 467889999999986555554
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.36 E-value=6.8e-05 Score=81.12 Aligned_cols=58 Identities=14% Similarity=0.133 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEEecCC-CcEEEEEcCCCCeeecCEEEEeecccc
Q psy2951 1247 KEVGERITKLFESKGVKFVMKANVSSFEKNEK-NDVTAANLDNGTTIPADLVIVGIGTVL 1305 (1466)
Q Consensus 1247 ~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~-g~~~~v~l~~g~~i~~D~vv~a~G~~p 1305 (1466)
..+.+.|.+.+++.|++|+++++|++|...++ +++..| +.+|+++.||.||+...+.|
T Consensus 236 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v-~~~g~~~~ad~VI~~~s~~~ 294 (297)
T d2bcgg1 236 GELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGV-KTKLGTFKAPLVIADPTYFP 294 (297)
T ss_dssp THHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEE-EETTEEEECSCEEECGGGCG
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEE-EcCCEEEECCEEEEChhhcc
Confidence 35778888999999999999999999964333 445545 46788999999997544444
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.29 E-value=7.7e-05 Score=85.59 Aligned_cols=42 Identities=17% Similarity=0.344 Sum_probs=36.5
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCC
Q psy2951 592 SGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD 635 (1466)
Q Consensus 592 ~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~ 635 (1466)
..+..||+|||||+|||+||+.|+++|++ |+++|+++.+++.
T Consensus 2 ~~~~~kViVIGaG~aGL~aA~~L~~~G~~--V~VlEa~~r~GGr 43 (449)
T d2dw4a2 2 TKKTGKVIIIGSGVSGLAAARQLQSFGMD--VTLLEARDRVGGR 43 (449)
T ss_dssp SSCCCEEEEECCBHHHHHHHHHHHHTTCE--EEEECSSSSSBTT
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhCCCC--EEEEeCCCCCccc
Confidence 34568899999999999999999999987 8899998876653
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.27 E-value=7.2e-05 Score=81.88 Aligned_cols=39 Identities=28% Similarity=0.485 Sum_probs=36.0
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCC
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD 1106 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~ 1106 (1466)
|.+|||||||++|++||..|++.|. +|+|||++++.+..
T Consensus 1 M~dv~IIGaG~sGl~~A~~L~~~g~--~V~iiEk~~~iGG~ 39 (298)
T d1i8ta1 1 MYDYIIVGSGLFGAVCANELKKLNK--KVLVIEKRNHIGGN 39 (298)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGGTC--CEEEECSSSSSSGG
T ss_pred CccEEEECCcHHHHHHHHHHHhCCC--cEEEEECCCCcccc
Confidence 5689999999999999999999998 99999999988753
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.26 E-value=7.7e-05 Score=81.67 Aligned_cols=39 Identities=26% Similarity=0.458 Sum_probs=35.4
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD 635 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~ 635 (1466)
++||||||||++|++||+.|++.|++ |+++|+.+.+++.
T Consensus 1 M~dv~IIGaG~sGl~~A~~L~~~g~~--V~iiEk~~~iGG~ 39 (298)
T d1i8ta1 1 MYDYIIVGSGLFGAVCANELKKLNKK--VLVIEKRNHIGGN 39 (298)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGGTCC--EEEECSSSSSSGG
T ss_pred CccEEEECCcHHHHHHHHHHHhCCCc--EEEEECCCCcccc
Confidence 57999999999999999999999988 8999999887764
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=97.24 E-value=9.6e-05 Score=81.39 Aligned_cols=39 Identities=23% Similarity=0.423 Sum_probs=36.2
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCCC
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYD 1106 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~~ 1106 (1466)
+++|+|||||++|++||..|++.|. +|+|+|++++++..
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~--~V~viEk~~~iGG~ 40 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGH--QVHIIDQRDHIGGN 40 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTC--EEEEEESSSSSSGG
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCC--CEEEEECCCCCcCe
Confidence 5789999999999999999999998 99999999998853
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.22 E-value=0.00011 Score=84.35 Aligned_cols=39 Identities=18% Similarity=0.374 Sum_probs=35.7
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCCC
Q psy2951 1065 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPY 1105 (1466)
Q Consensus 1065 ~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~~ 1105 (1466)
.+.+|||||||+|||+||..|+++|+ +|+|+|+++.++.
T Consensus 4 ~~~kViVIGaG~aGL~aA~~L~~~G~--~V~VlEa~~r~GG 42 (449)
T d2dw4a2 4 KTGKVIIIGSGVSGLAAARQLQSFGM--DVTLLEARDRVGG 42 (449)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHTTC--EEEEECSSSSSBT
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCC--CEEEEeCCCCCcc
Confidence 45689999999999999999999999 9999999987765
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=97.22 E-value=9.2e-05 Score=81.52 Aligned_cols=40 Identities=23% Similarity=0.399 Sum_probs=36.1
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCCCCCCCC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLPYDR 636 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~~~~~~~ 636 (1466)
+++|+|||||++||+||+.|++.|++ |+++|+++.+++..
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~~--V~viEk~~~iGG~~ 41 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGHQ--VHIIDQRDHIGGNS 41 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCE--EEEEESSSSSSGGG
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCC--EEEEECCCCCcCee
Confidence 68999999999999999999999987 88999998877643
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=97.20 E-value=8.9e-05 Score=79.89 Aligned_cols=35 Identities=17% Similarity=0.347 Sum_probs=30.6
Q ss_pred CCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEE
Q psy2951 40 SGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFI 74 (1466)
Q Consensus 40 ~~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~ 74 (1466)
...++||+|||||++||++|+.|+++|++|+|++.
T Consensus 3 ~~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier 37 (268)
T d1c0pa1 3 MHSQKRVVVLGSGVIGLSSALILARKGYSVHILAR 37 (268)
T ss_dssp CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeC
Confidence 34467899999999999999999999999888764
|
| >d3lada3 d.87.1.1 (A:349-472) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=97.18 E-value=8.3e-05 Score=68.55 Aligned_cols=64 Identities=25% Similarity=0.347 Sum_probs=54.0
Q ss_pred CCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh--cccCCCCccccC
Q psy2951 392 EALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL--GKLDYHGTITIS 456 (1466)
Q Consensus 392 ~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~--~~~~~~~~~~~~ 456 (1466)
+..||.+++.+ +++|+|++++|. +++++.++ .+|+.+.+. +++.|||++|.+ ++..+.++++|+
T Consensus 49 ~~~G~vKlv~d~~t~~ILGa~ivg~~A~elI~~~~-~ai~~~~t~~~l~~~i~~hPT~sE~l~~Aa~~~~~~~ih~ 123 (124)
T d3lada3 49 DTAGFVKVIADAKTDRVLGVHVIGPSAAELVQQGA-IAMEFGTSAEDLGMMVFAHPALSEALHEAALAVSGHAIHV 123 (124)
T ss_dssp CCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHH-HHHHHTCBHHHHHTSCCCSSCSHHHHHHHHHHHTTCCTTC
T ss_pred CCCeEEEEEEECCCCEEEEEEEEcccHHHHHHHHH-HHHHcCCCHHHHHhCCccCCCHHHHHHHHHHHhcCCCccc
Confidence 46789998886 489999999999 56777777 999999876 899999999999 778888887775
|
| >d1v59a3 d.87.1.1 (A:356-478) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.12 E-value=0.00011 Score=67.50 Aligned_cols=63 Identities=16% Similarity=0.260 Sum_probs=51.1
Q ss_pred CCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh--cccCCCCcccc
Q psy2951 392 EALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL--GKLDYHGTITI 455 (1466)
Q Consensus 392 ~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~--~~~~~~~~~~~ 455 (1466)
+..||.+++.+ +++|+|++++|. +++++.++ .+|+.+.+. ++++|||++|.+ ++..+.++++|
T Consensus 49 ~~~G~~Kli~d~~~~~ilGa~ivG~~A~elI~~~a-lai~~~~t~~~l~~~i~~hPT~sE~~~~Aa~~~~~~~ih 122 (123)
T d1v59a3 49 DTEGFVKILIDSKTERILGAHIIGPNAGEMIAEAG-LALEYGASAEDVARVCHAHPTLSEAFKEANMAAYDKAIH 122 (123)
T ss_dssp CCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHH-HHHHTTCBHHHHHTSCCCTTCTTHHHHHHHHHHHSCCSC
T ss_pred CCcEEEEEEEECCCCEEEEEEEEchHHHHHHHHHH-HHHHcCCcHHHHHhcccCCCcHHHHHHHHHHHHcCCCCC
Confidence 46789998886 489999999999 56777777 999999986 899999999999 56665555554
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Probab=97.06 E-value=0.0019 Score=71.45 Aligned_cols=125 Identities=18% Similarity=0.189 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEE---EEcCCCC--eeecCEEEEeeccccC-----------cc----
Q psy2951 1249 VGERITKLFESKGVKFVMKANVSSFEKNEKNDVTA---ANLDNGT--TIPADLVIVGIGTVLN-----------TN---- 1308 (1466)
Q Consensus 1249 ~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~---v~l~~g~--~i~~D~vv~a~G~~p~-----------~~---- 1308 (1466)
+...|.+..++.+++++....+..+...+++.+.. ....+|+ .+.++.||+|+|-... +.
T Consensus 145 i~~~L~~~~~~~~v~~~~~~~~~~l~~~~~~~~~g~~~~~~~~g~~~~~~a~~vIlAtGG~~~ly~~ttn~~~~tGdG~~ 224 (330)
T d1neka2 145 LLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVG 224 (330)
T ss_dssp HHHHHHHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEEETTTCCEEEEEESCEEECCCCCGGGSSSBSSCTTCSCHHHH
T ss_pred HHHHHHHHHHhcCCeEEEEEEEEEeeeeccccceeeeeEEccCCcEEEEeccEEEEcCCCccccccCcCCCCccEeHHHH
Confidence 34445566677889998888888875345554433 3455664 4689999999994321 10
Q ss_pred ccccCCcee-eCCCeEEeC---------CC-ccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhc
Q psy2951 1309 YLDGKGVEL-NGQKAVVVN---------EY-LETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMV 1375 (1466)
Q Consensus 1309 ~~~~~gl~~-~~~G~i~vd---------~~-~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~ 1375 (1466)
++..+|..+ |-.|++..+ +. .++..|++||+|+|+....- +-.++--.+...+.--|+.|++.+.
T Consensus 225 ~a~~aGa~l~d~~~~~~~~~~~~~~~~~~~g~~~v~~gl~a~Ge~a~~g~H--ganrL~~nsl~~~~v~g~~ag~~~~ 300 (330)
T d1neka2 225 MAIRAGVPVQDMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVH--GANRLGGNSLLDLVVFGRAAGLHLQ 300 (330)
T ss_dssp HHHTTTCCEESECCBEEBCTTCEEEEECSSSCEEEEEEEEECSSSEECSSS--TTSCCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCccccccccccccccceeecccCCCceecccccccCcccccccc--cccccccccHHHHHHHHHHHHHHHH
Confidence 222334333 212333332 22 23347899999999864211 0011111245566666777776665
|
| >d1dxla3 d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=97.00 E-value=0.00016 Score=66.33 Aligned_cols=63 Identities=17% Similarity=0.214 Sum_probs=50.4
Q ss_pred CCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh--cccCCCCcccc
Q psy2951 392 EALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL--GKLDYHGTITI 455 (1466)
Q Consensus 392 ~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~--~~~~~~~~~~~ 455 (1466)
+..+|.+++.+ +++|+|++++|. +++++.++ .+|+++.+. ++++|||++|.+ ++..+.++++|
T Consensus 49 ~~~G~~Klv~d~~~~~ilG~~ivG~~A~elI~~~~-~ai~~~~t~~~l~~~i~~hPT~sE~~~~aa~~~~~~~ih 122 (123)
T d1dxla3 49 NAEGLVKIIAEKETDKILGVHIMAPNAGELIHEAA-IALQYDASSEDIARVCHAHPTMSEAIKEAAMATYDKPIH 122 (123)
T ss_dssp CCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHH-HHHHTTCBHHHHHTSCCCSSCTTHHHHHHHHHHHSCCSC
T ss_pred CCcceEEEEEECCCCEEEEEEEehhhHHHHHHHHH-HHHHcCCcHHHHhhCCCCCCCHHHHHHHHHHHHcCCCCC
Confidence 46789999987 389999999998 56777777 999999986 799999999998 55554554444
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.99 E-value=0.0025 Score=68.84 Aligned_cols=155 Identities=12% Similarity=0.007 Sum_probs=92.6
Q ss_pred eEEEEcCCHHHHHHHHHHhcCCC-eEEEEcCCCcCCcc----ccc-----------------------------------
Q psy2951 1207 NVVVIGSSFIGMEAAAFCASKVK-SVTVVGRGAVPFQE----SLG----------------------------------- 1246 (1466)
Q Consensus 1207 ~vvVvG~g~~g~e~a~~l~~~g~-~v~vv~~~~~~~~~----~~~----------------------------------- 1246 (1466)
+|+|||+|+.|+-+|..|++.|. +|+|+++.+.+... .+.
T Consensus 3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 82 (288)
T d3c96a1 3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSGAT 82 (288)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTSCE
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceEEEECHHHHHHHHHcCchhhhHhhhcccccceeEcCCCCE
Confidence 79999999999999999999995 99999987654210 000
Q ss_pred ---------------------HHHHHHHH--HHHHhCCcEEEcCceEEEEEecCCCcEEEEEcCCC----CeeecCEEEE
Q psy2951 1247 ---------------------KEVGERIT--KLFESKGVKFVMKANVSSFEKNEKNDVTAANLDNG----TTIPADLVIV 1299 (1466)
Q Consensus 1247 ---------------------~~~~~~l~--~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l~~g----~~i~~D~vv~ 1299 (1466)
......+. ......++.+..+.+++.+. ..++. ..+.+.|| +++.+|+||.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~-v~v~~~~g~~~~~~~~ad~vi~ 160 (288)
T d3c96a1 83 VWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIE-ERDGR-VLIGARDGHGKPQALGADVLVG 160 (288)
T ss_dssp EEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEE-EETTE-EEEEEEETTSCEEEEEESEEEE
T ss_pred EEeccccccccccCcccccchhhhHHHHHHHHHHhccCeeeecCcEEEEee-ecCCc-EEEEEEcCCCCeEEEeeceeec
Confidence 00111111 12234578888899998887 33333 34666665 4789999999
Q ss_pred eeccccCccccccCCceeeCCCeEEeCCCccccCCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhc
Q psy2951 1300 GIGTVLNTNYLDGKGVELNGQKAVVVNEYLETNVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMV 1375 (1466)
Q Consensus 1300 a~G~~p~~~~~~~~gl~~~~~G~i~vd~~~~t~~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~ 1375 (1466)
|-|....+.-...... . .............+..+||.++.-.+..+.+ -..|...+...+..+.
T Consensus 161 ADG~~S~vr~~~~~~~--~----~~~~~~~~~~~~~~~~~gda~h~~~p~~g~G------~~~ai~d~~~l~~~l~ 224 (288)
T d3c96a1 161 ADGIHSAVRAHLHPDQ--R----PLRDPLPHWGRGRITLLGDAAHLMYPMGANG------ASQAILDGIELAAALA 224 (288)
T ss_dssp CCCTTCHHHHHHCTTC--C----CCCCCCSCCCBTTEEECTHHHHCCCSSTTCT------HHHHHHHHHHHHHHHH
T ss_pred cCCccceeeeeecccc--c----cccccccccccCcceecccccceeCCccccc------hhhhhhhHHHHHHHHh
Confidence 9997654321110000 0 0001112223567999999987544432211 1456666666665554
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.98 E-value=0.00029 Score=77.58 Aligned_cols=74 Identities=16% Similarity=0.120 Sum_probs=49.3
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHc--CCCccEEEEcCCCCCCCCCCccchhcccCcccccccCHhHhhhCCcEEEEce
Q psy2951 592 SGNKDTFIVVGGGPSGATCVETLRQN--GFTGKLYFITDENFLPYDRVKLSKQLDIKADSILLRTEEFYKDNDIHVIKGK 669 (1466)
Q Consensus 592 ~~~~~~vvVIGgG~AGl~aA~~l~~~--g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~ 669 (1466)
....+||+|||||||||+||+.|+++ |++ |+++|+.+.+++.... ... ..+...+.......+.+.++.+....
T Consensus 47 ~~~~~~~~~~g~g~~g~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~~gi~~~~~~ 122 (311)
T d2gjca1 47 KFAVSDVIIVGAGSSGLSAAYVIAKNRPDLK--VCIIESSVAPGGGSWL-GGQ-LFSAMVMRKPAHLFLQELEIPYEDEG 122 (311)
T ss_dssp HTTEESEEEECCSHHHHHHHHHHHHHCTTSC--EEEECSSSSCCTTTTC-CGG-GCCCEEEETTTHHHHHHTTCCCEECS
T ss_pred cccCCCEEEECCCHHHHHHHHHHHHhCCCCe--EEEEEcCCCCcceeEe-cCE-eCCHHHHHhHHHHHHHhCCcEEEEec
Confidence 34568999999999999999999976 766 8999998776654322 111 11222233344556677787765443
|
| >d1ojta3 d.87.1.1 (A:471-598) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=96.89 E-value=0.0004 Score=64.08 Aligned_cols=67 Identities=19% Similarity=0.197 Sum_probs=57.3
Q ss_pred CCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh--cccCCCCccccCCCC
Q psy2951 392 EALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL--GKLDYHGTITISPNS 459 (1466)
Q Consensus 392 ~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~--~~~~~~~~~~~~~~~ 459 (1466)
+..+|.+.+.+ +++|+|++++|. +++++.++ .+|+.+.+. ++++|||++|.+ ++..+.++.+|.|.+
T Consensus 49 ~~~g~~Kli~d~~~g~iLGa~ivG~~A~ElI~~~~-lai~~~~t~~~l~~~i~~hPT~sE~l~~Aa~~~~~~~~~~~~~ 126 (128)
T d1ojta3 49 CDKPFTKLIFDAETGRIIGGGIVGPNGGDMIGEVC-LAIEMGCDAADIGKTIHPHPTLGESIGMAAEVALGTCTDLPPQ 126 (128)
T ss_dssp CCSCEEEEEEETTTCBEEEEEEESTTHHHHHHHHH-HHHHTTCBHHHHHTSCCCSSSSTTHHHHHHHHHHTCCTTSSCS
T ss_pred CccceEEEEEeCCCCeEEEEEEEhhhHHHHHHHHH-HHHHcCCCHHHHhhCcCcCCCHHHHHHHHHHHHcCCcccCCCC
Confidence 46789998886 489999999999 56777777 999999886 899999999999 788888999998764
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.78 E-value=0.00018 Score=79.33 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=30.3
Q ss_pred CCCCCCCcEEEECCchHHHHHHHHHHhc--CCCCcEEEEc
Q psy2951 38 LSSGNKDTFIVVGGGPSGATCVETLRQN--GFTGKLYFIT 75 (1466)
Q Consensus 38 ~~~~~~~dVvIIGgG~AGl~aA~~l~~~--g~~v~i~~~~ 75 (1466)
+.....+||+|||||||||+||+.|+++ |++|.|++..
T Consensus 45 ~~~~~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~ 84 (311)
T d2gjca1 45 LDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESS 84 (311)
T ss_dssp HHHTTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSS
T ss_pred cccccCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcC
Confidence 3334568999999999999999999975 7777776543
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.70 E-value=0.0019 Score=70.11 Aligned_cols=99 Identities=15% Similarity=0.164 Sum_probs=70.2
Q ss_pred eEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcCC------ccccc----------------------------------
Q psy2951 1207 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVPF------QESLG---------------------------------- 1246 (1466)
Q Consensus 1207 ~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~~------~~~~~---------------------------------- 1246 (1466)
+|+|||+|+.|+-+|..|++.|.+|+|+++.+.+. .-.+.
T Consensus 4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~~~ 83 (292)
T d1k0ia1 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQR 83 (292)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTEE
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCceEEEECHHHHHHHHHcCchHHHHhhcccccceEEEecccc
Confidence 69999999999999999999999999999875210 00000
Q ss_pred -------------------HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEc-CCCC--eeecCEEEEeeccc
Q psy2951 1247 -------------------KEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAANL-DNGT--TIPADLVIVGIGTV 1304 (1466)
Q Consensus 1247 -------------------~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v~l-~~g~--~i~~D~vv~a~G~~ 1304 (1466)
..+.+.|.+.+++.+...+......... ..++....|.+ .+|+ ++.||+||.|-|..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~g~~~~i~a~~vVgADG~~ 162 (292)
T d1k0ia1 84 RRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLH-DLQGERPYVTFERDGERLRLDCDYIAGCDGFH 162 (292)
T ss_dssp EEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEE-CTTSSSCEEEEEETTEEEEEECSEEEECCCTT
T ss_pred cccccccccccccceeecHHHHHHHHHHHHHhCCCcEEEcceeeeee-eeccCceEEEEecCCcEEEEEeCEEEECCCCC
Confidence 3355667777778888888777766655 23333333444 4554 57899999999976
Q ss_pred cC
Q psy2951 1305 LN 1306 (1466)
Q Consensus 1305 p~ 1306 (1466)
..
T Consensus 163 S~ 164 (292)
T d1k0ia1 163 GI 164 (292)
T ss_dssp CS
T ss_pred Cc
Confidence 54
|
| >d1gesa3 d.87.1.1 (A:336-450) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=96.45 E-value=0.0016 Score=58.67 Aligned_cols=52 Identities=15% Similarity=0.162 Sum_probs=44.5
Q ss_pred CCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 392 EALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 392 ~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
+..+|.+++.+ +++|+|++++|. +++++.++ .+|..+.+. ++++|||++|.+
T Consensus 51 ~~~g~~k~v~~~~~~~IlGa~ivG~~A~ElI~~~~-~ai~~~~t~~~l~~~i~~hPT~sE~l 111 (115)
T d1gesa3 51 RQPCRMKLVCVGSEEKIVGIHGIGFGMDEMLQGFA-VALKMGATKKDFDNTVAIHPTAAEEF 111 (115)
T ss_dssp CCEEEEEEEEETTTTEEEEEEEESTTHHHHHHHHH-HHHHTTCBHHHHHTSCCCSSCSGGGG
T ss_pred cccceEEEEEecCCcEEEEEEEECCCHHHHHHHHH-HHHHcCCcHHHHhcCcccCCcHHHHH
Confidence 35689988886 489999999999 56777777 999999876 899999999987
|
| >d1lvla3 d.87.1.1 (A:336-458) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=96.24 E-value=0.0014 Score=59.79 Aligned_cols=63 Identities=25% Similarity=0.302 Sum_probs=52.1
Q ss_pred CCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh--cccCCCCcccc
Q psy2951 392 EALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL--GKLDYHGTITI 455 (1466)
Q Consensus 392 ~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~--~~~~~~~~~~~ 455 (1466)
+..+|.+++.+ +++|+|++++|. +++++.++ .+|+++.+. ++++|||++|.+ ++..+.++.+|
T Consensus 49 ~~~g~vklv~d~~t~~ILG~~ivG~~A~elI~~~~-lai~~~~t~~~l~~~i~~hPT~sE~~~~aa~~~~~~~~h 122 (123)
T d1lvla3 49 SKSGFVRVVARRDNHLILGWQAVGVAVSELSTAFA-QSLEMGACLEDVAGTIHAHPTLGEAVQEAALRALGHALH 122 (123)
T ss_dssp CCCCEEEEEEETTTCBEEEEEEEETTGGGHHHHHH-HHHHHTCBHHHHHTSCCCTTCTTHHHHHHHHHHTTCCSC
T ss_pred cchhheeeeeecccccceEEEEEeCchhhHHHHHH-HHHHcCCCHHHHhcCCCCCCCHHHHHHHHHHHHcCCCCC
Confidence 35689988886 489999999998 66777777 999999886 899999999999 66667776665
|
| >d1h6va3 d.87.1.1 (A:367-499) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.22 E-value=0.0042 Score=57.44 Aligned_cols=42 Identities=14% Similarity=0.236 Sum_probs=37.0
Q ss_pred CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhhc
Q psy2951 403 ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVLG 445 (1466)
Q Consensus 403 ~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~~ 445 (1466)
+++|+|++++|. +++++.++ .+|..+.+. ++++|||++|.+.
T Consensus 66 ~~~ILGa~ivg~~A~ElI~~~~-~ai~~~~t~~~l~~~i~~hPT~sE~~~ 114 (133)
T d1h6va3 66 NERVVGFHVLGPNAGEVTQGFA-AALKCGLTKQQLDSTIGIHPVCAEIFT 114 (133)
T ss_dssp TTEEEEEEEESTTHHHHHHHHH-HHHHTTCBHHHHHHSCCCTTCGGGGGG
T ss_pred cccEEEEEEeCCCHHHHHHHHH-HHHHcCCCHHHHhhccccCCCHHHHHH
Confidence 589999999999 56777777 999999886 8999999999983
|
| >d3grsa3 d.87.1.1 (A:364-478) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.03 E-value=0.0049 Score=55.35 Aligned_cols=52 Identities=17% Similarity=0.181 Sum_probs=44.8
Q ss_pred CCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 392 EALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 392 ~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
+..+|.+.+.+ +++|+|++++|. +++++.++ .+|+++.+. ++++|||++|.+
T Consensus 51 ~~~g~~k~i~~~~~~~ilG~~ivG~~A~ElI~~~~-~ai~~~~t~~~l~~~i~~hPT~sE~l 111 (115)
T d3grsa3 51 KTKCVMKMVCANKEEKVVGIHMQGLGCDEMLQGFA-VAVKMGATKADFDNTVAIHPTSSEEL 111 (115)
T ss_dssp CCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHH-HHHHTTCBHHHHHTSCCCSSCSGGGG
T ss_pred ccceeEEEEEecCCceEEEEEEeccCHHHHHHHHH-HHHHcCCCHHHHhhCccCCCCHHHHH
Confidence 35689988886 589999999999 56777777 999999986 899999999987
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=96.03 E-value=0.0023 Score=71.84 Aligned_cols=38 Identities=18% Similarity=0.357 Sum_probs=31.9
Q ss_pred CCCeEEEEcCchHHHHHHHHHH-----HcCCCccEEEEcCCCCCC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLR-----QNGFTGKLYFITDENFLP 633 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~-----~~g~~~~v~~~~~~~~~~ 633 (1466)
+.+||+||||||+|+++|..|+ +.|++ |+++|+.+.+.
T Consensus 6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~--v~vlEr~~~~~ 48 (360)
T d1pn0a1 6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLK--VRIIDKRSTKV 48 (360)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCC--EEEECSSSSCC
T ss_pred CCCCEEEECcCHHHHHHHHHHHhcccccCCCc--EEEEcCCCCCC
Confidence 3589999999999999999997 46888 88888876544
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=95.94 E-value=0.0022 Score=71.97 Aligned_cols=39 Identities=23% Similarity=0.440 Sum_probs=33.1
Q ss_pred CCCcEEEECCchHHHHHHHHHH-----hcCCCCcEEEEcCCCCCCC
Q psy2951 1065 NKDTFIVVGGGPSGATCVETLR-----QNGFTGKLYFITDENFLPY 1105 (1466)
Q Consensus 1065 ~~~~vvIVG~G~aGl~aA~~L~-----~~g~~~~i~li~~~~~~~~ 1105 (1466)
+.++|+|||||++|+++|..|+ +.|. +|+|||+.+.+.+
T Consensus 6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~--~v~vlEr~~~~~~ 49 (360)
T d1pn0a1 6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDL--KVRIIDKRSTKVY 49 (360)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHHHHHSTTC--CEEEECSSSSCCC
T ss_pred CCCCEEEECcCHHHHHHHHHHHhcccccCCC--cEEEEcCCCCCCc
Confidence 3579999999999999999996 4688 9999999875443
|
| >d1feca3 d.87.1.1 (A:358-485) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=95.86 E-value=0.0056 Score=56.06 Aligned_cols=51 Identities=16% Similarity=0.089 Sum_probs=42.8
Q ss_pred CCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 393 ALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 393 ~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
..+|.+++.+ +++|+|++++|. +++++.++ .+|+.+.+. ++++|||++|.+
T Consensus 51 ~~~~~klv~~~~~g~iLGa~ivG~~A~ElI~~~~-~ai~~~~t~~~l~~~i~~hPT~sE~l 110 (128)
T d1feca3 51 KKFMVRIVTNHADGEVLGVHMLGDSSPEIIQSVA-ICLKMGAKISDFYNTIGVHPTSAEEL 110 (128)
T ss_dssp CCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHH-HHHHTTCBHHHHHTSCCCSSCSGGGG
T ss_pred ccceEEEeecCCCCceeEEEEECCCHHHHHHHHH-HHHHcCCcHHHHhcCcCCCCcHHHHH
Confidence 4567777765 489999999999 56777777 999999886 899999999988
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=95.84 E-value=0.0031 Score=71.34 Aligned_cols=111 Identities=17% Similarity=0.205 Sum_probs=64.9
Q ss_pred hcCcEEEccceEEEEEecC-CCceEEEE---CCCCc--EEecCEEEEccccccCccccccCCcee---------------
Q psy2951 788 SKGVKFVMKANVSSFEKNE-KNDVTAAN---LDNGT--TIPADLVIVGIGTVLNTNYLDGKGVEL--------------- 846 (1466)
Q Consensus 788 ~~gv~~~~~~~v~~i~~~~-~~~~~~v~---~~~g~--~i~~D~vi~a~G~~p~~~~~~~~gl~~--------------- 846 (1466)
..|+++++++.|.+|..+. +.++..|+ ..+++ .+.++.||+|.|..-...++-..++.-
T Consensus 230 ~~~~~l~~~a~V~~i~~~~~~~r~~gV~~~d~~~g~~~~i~a~~vilaaGa~~tp~lL~~Sg~~~~~~~~~~~~~~~~~~ 309 (379)
T d2f5va1 230 EERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPTNPPELLPS 309 (379)
T ss_dssp EEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEEEEEEEEECSCHHHHHHHHHHTTSSCCSSCCTTSCCSSSTT
T ss_pred CCCCEEecCCEEEEEEEeCCCCEEEEEEEEECCCCEEEEEeceEEEeccCccCCHHHHhhcccccccccccccCcccccc
Confidence 4578999999999997543 34566665 44555 578999999988644333322211110
Q ss_pred --------eCC-CcEEeCCCCCC-CCCCeEEeccccccCCcccCCceeeeccHHHHHHHHHHHHHHhcc
Q psy2951 847 --------NGQ-KAVVVNEYLET-NVPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVE 905 (1466)
Q Consensus 847 --------~~~-G~i~vd~~~~t-~~~~iya~GD~~~~~~~~~~~~~~~~~~~~~A~~~g~~aA~~i~~ 905 (1466)
+.. -.-+||.++++ ..+|+|++| +.-+|.... .++. .....-|..+|++|..
T Consensus 310 ~g~h~mG~~~~~~~~vvd~~~~v~g~~nlyv~d-~sv~p~~~~----~nPt--~t~~alA~r~a~~i~~ 371 (379)
T d2f5va1 310 LGSHRMGFDEKEDNCCVNTDSRVFGFKNLFLGG-CGNIPTAYG----ANPT--LTAMSLAIKSCEYIKQ 371 (379)
T ss_dssp TTBTCBCSCTTTTTCSBCTTCBBTTCSSEEECS-GGGCCSCCC----SCSH--HHHHHHHHHHHHHHHH
T ss_pred cceeecccCCCCCCccCCCCCcccccCCEEEeC-CcccCCccc----cCcH--HHHHHHHHHHHHHHHH
Confidence 000 01257777887 589999876 544554431 1111 2344445567777754
|
| >d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=95.81 E-value=0.004 Score=58.27 Aligned_cols=107 Identities=10% Similarity=0.077 Sum_probs=71.1
Q ss_pred ecCHHHHHhhhccc---CCCCeEEEEcC-C-----H----HHHHHHHHHhcCCC--eEEEEcCCCcCCc-ccccHHHHHH
Q psy2951 1189 LRTVEDANNIAPHI---TPESNVVVIGS-S-----F----IGMEAAAFCASKVK--SVTVVGRGAVPFQ-ESLGKEVGER 1252 (1466)
Q Consensus 1189 ~~~~~~~~~l~~~~---~~~~~vvVvG~-g-----~----~g~e~a~~l~~~g~--~v~vv~~~~~~~~-~~~~~~~~~~ 1252 (1466)
+....++.+|++.+ +.|+++|+.-. + . +++-++..|+++|. ++.++...+.+.. ..+.+.+.+.
T Consensus 14 ~~~~~~~~~L~~~l~~~~~Gg~vv~t~p~~P~kCpgAP~e~a~l~~~~lr~~g~r~kv~i~~~~~~~~~~~~~~~~~~~~ 93 (141)
T d1fcda2 14 WKAGEQTAILRKQLEDMADGGTVVIAPPAAPFRCPPGPYERASQVAYYLKAHKPMSKVIILDSSQTFSKQSQFSKGWERL 93 (141)
T ss_dssp SSCSHHHHHHHHHHHHSCTTCCEEEECCCSSCSSTTHHHHHHHHHHHHHGGGCSCCCEEEECSCSSCTTHHHHHHHHHHH
T ss_pred ecccHHHHHHHHHHHhcccCCeEEEecCCCCccCCchHHHHHHHHHHHHHHcCCCCcEEEEecCCCCccCCcccHHHHHH
Confidence 44456677777665 34667766532 2 2 35556667888875 6777776654321 1223556777
Q ss_pred HHHHHHhCCcEEEcCc--eEEEEEecCCCcEEEEEcCCCCeeecCEEEE
Q psy2951 1253 ITKLFESKGVKFVMKA--NVSSFEKNEKNDVTAANLDNGTTIPADLVIV 1299 (1466)
Q Consensus 1253 l~~~~~~~gv~~~~~~--~v~~i~~~~~g~~~~v~l~~g~~i~~D~vv~ 1299 (1466)
+.+.++++||+++.+. .+.+++ ... + .+++.+|+++++|++++
T Consensus 94 ~~~~~~~~~I~~~~~~~~~~v~vd-~~~-~--~~~~~~Ge~v~yD~l~v 138 (141)
T d1fcda2 94 YGFGTENAMIEWHPGPDSAVVKVD-GGE-M--MVETAFGDEFKADVINL 138 (141)
T ss_dssp HCSTTSSCSEEEECSSTTCEEEEE-ETT-T--EEEETTCCEEECSEEEE
T ss_pred HHHHHHhcCceeeecCCceEEeec-CCc-E--EEEeCCCcEEeeeEEEe
Confidence 8888889999999876 466776 222 2 37789999999999987
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=95.79 E-value=0.0034 Score=70.92 Aligned_cols=111 Identities=16% Similarity=0.197 Sum_probs=67.9
Q ss_pred hCCcEEEcCceEEEEEecC-CCcEEEEEc---CCCC--eeecCEEEEeeccccCccccccCCcee---------------
Q psy2951 1259 SKGVKFVMKANVSSFEKNE-KNDVTAANL---DNGT--TIPADLVIVGIGTVLNTNYLDGKGVEL--------------- 1317 (1466)
Q Consensus 1259 ~~gv~~~~~~~v~~i~~~~-~g~~~~v~l---~~g~--~i~~D~vv~a~G~~p~~~~~~~~gl~~--------------- 1317 (1466)
..|+++++++.|++|...+ ++++..|+. .+|+ ++.++.||++.|..-...+|-.+|+.-
T Consensus 230 ~~~~~l~~~a~V~~i~~~~~~~r~~gV~~~d~~~g~~~~i~a~~vilaaGa~~tp~lL~~Sg~~~~~~~~~~~~~~~~~~ 309 (379)
T d2f5va1 230 EERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPTNPPELLPS 309 (379)
T ss_dssp EEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEEEEEEEEECSCHHHHHHHHHHTTSSCCSSCCTTSCCSSSTT
T ss_pred CCCCEEecCCEEEEEEEeCCCCEEEEEEEEECCCCEEEEEeceEEEeccCccCCHHHHhhcccccccccccccCcccccc
Confidence 4578999999999997433 346777774 4565 468999999999644333332222110
Q ss_pred --------eCC-CeEEeCCCcccc-CCCEEEecccccCCCccCCCceeeeecHHHHHHHHHHHHHHhcC
Q psy2951 1318 --------NGQ-KAVVVNEYLETN-VPGVYAGGDIAYAPLHSFYNKNASIGHYQLAQYHGRIAALNMVE 1376 (1466)
Q Consensus 1318 --------~~~-G~i~vd~~~~t~-~~~v~a~GD~a~~p~~~~~~~~~~~~~~~~A~~qa~~aa~~i~g 1376 (1466)
+.. ..-+||..+++. .+|+|.++ +.-+|.....+.. -....-|..+|+.|.-
T Consensus 310 ~g~h~mG~~~~~~~~vvd~~~~v~g~~nlyv~d-~sv~p~~~~~nPt------~t~~alA~r~a~~i~~ 371 (379)
T d2f5va1 310 LGSHRMGFDEKEDNCCVNTDSRVFGFKNLFLGG-CGNIPTAYGANPT------LTAMSLAIKSCEYIKQ 371 (379)
T ss_dssp TTBTCBCSCTTTTTCSBCTTCBBTTCSSEEECS-GGGCCSCCCSCSH------HHHHHHHHHHHHHHHH
T ss_pred cceeecccCCCCCCccCCCCCcccccCCEEEeC-CcccCCccccCcH------HHHHHHHHHHHHHHHH
Confidence 100 013788888885 89999865 5667765321111 2344445667777764
|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.63 E-value=0.0046 Score=69.19 Aligned_cols=37 Identities=16% Similarity=0.364 Sum_probs=31.4
Q ss_pred CCeEEEEcCchHHHHHHHHHHH----cCCCccEEEEcCCCCCC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQ----NGFTGKLYFITDENFLP 633 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~----~g~~~~v~~~~~~~~~~ 633 (1466)
..||||||+|+|||+||+.|++ .|.+ |+++|+.+...
T Consensus 21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~--V~vieK~~~~g 61 (356)
T d1jnra2 21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLK--VTLVEKAAVER 61 (356)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHTTTTCC--EEEECSSCTTT
T ss_pred ecCEEEECCCHHHHHHHHHHHHHHHhCcCE--EEEEeCCCCCC
Confidence 5899999999999999999986 5766 89999976443
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=95.63 E-value=0.0032 Score=71.02 Aligned_cols=38 Identities=24% Similarity=0.422 Sum_probs=32.8
Q ss_pred CCCCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcC
Q psy2951 39 SSGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITD 76 (1466)
Q Consensus 39 ~~~~~~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~ 76 (1466)
....++||||||+|+||+.+|.+|++.|++|.|+|...
T Consensus 3 ~~~~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~ 40 (370)
T d3coxa1 3 ADGDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGR 40 (370)
T ss_dssp CTTCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 34457999999999999999999999999988877643
|
| >d1onfa3 d.87.1.1 (A:377-495) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=95.45 E-value=0.0097 Score=53.76 Aligned_cols=51 Identities=12% Similarity=0.180 Sum_probs=43.4
Q ss_pred CCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 393 ALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 393 ~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
..+|.+++.+ +++|+|++++|. +++++.++ .+|+.+.+. ++++|||++|.+
T Consensus 56 ~~g~~kli~~~~~~~IlGa~ivG~~A~ElI~~~~-~ai~~~~t~~~l~~~i~~hPT~sE~~ 115 (119)
T d1onfa3 56 EKTYLKLVCVGKDELIKGLHIIGLNADEIVQGFA-VALKMNATKKDFDETIPIHPTAAEEF 115 (119)
T ss_dssp CCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHH-HHHHTTCBHHHHHTSCCCTTCSTTHH
T ss_pred CCceEEEEEecCCCcEEEEEEeCCCHHHHHHHHH-HHHHcCCcHHHHhhCcccCCCHHHHH
Confidence 4588877766 489999999999 66777777 999999876 899999999987
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.22 E-value=0.0023 Score=67.25 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=26.2
Q ss_pred cEEEECCchHHHHHHHHHHhcCCCCcEEE
Q psy2951 45 TFIVVGGGPSGATCVETLRQNGFTGKLYF 73 (1466)
Q Consensus 45 dVvIIGgG~AGl~aA~~l~~~g~~v~i~~ 73 (1466)
+|+|||||++|+++|+.|+++|+++.+++
T Consensus 2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e 30 (246)
T d1kifa1 2 RVVVIGAGVIGLSTALCIHERYHSVLQPL 30 (246)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHTTTSSSC
T ss_pred EEEEECchHHHHHHHHHHHHCCCCceEEe
Confidence 69999999999999999999999986543
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=95.04 E-value=0.0058 Score=68.66 Aligned_cols=33 Identities=18% Similarity=0.235 Sum_probs=29.9
Q ss_pred CcEEEECCchHHHHHHHHHHhcCCCCcEEEEcC
Q psy2951 44 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITD 76 (1466)
Q Consensus 44 ~dVvIIGgG~AGl~aA~~l~~~g~~v~i~~~~~ 76 (1466)
.||||||+|+||+.+|.+|++.|++|.|+|...
T Consensus 3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~ 35 (367)
T d1n4wa1 3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ 35 (367)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecCC
Confidence 489999999999999999999999998887654
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.95 E-value=0.0068 Score=63.47 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=28.1
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCcc----EEEEcCC
Q psy2951 596 DTFIVVGGGPSGATCVETLRQNGFTGK----LYFITDE 629 (1466)
Q Consensus 596 ~~vvVIGgG~AGl~aA~~l~~~g~~~~----v~~~~~~ 629 (1466)
++|+|||||++||++|+.|+++|+++. ++++++.
T Consensus 1 mkV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~~~ 38 (246)
T d1kifa1 1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADR 38 (246)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESC
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCceEEeeeeecccC
Confidence 479999999999999999999999853 4455444
|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.93 E-value=0.0084 Score=66.91 Aligned_cols=35 Identities=20% Similarity=0.450 Sum_probs=30.5
Q ss_pred CCcEEEECCchHHHHHHHHHHh----cCCCCcEEEEcCCCC
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQ----NGFTGKLYFITDENF 1102 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~----~g~~~~i~li~~~~~ 1102 (1466)
..+|||||+|+||++||.+|++ .|. +|+||||.+.
T Consensus 21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~--~V~vieK~~~ 59 (356)
T d1jnra2 21 ETDILIIGGGFSGCGAAYEAAYWAKLGGL--KVTLVEKAAV 59 (356)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHTTTTC--CEEEECSSCT
T ss_pred ecCEEEECCCHHHHHHHHHHHHHHHhCcC--EEEEEeCCCC
Confidence 4689999999999999999975 566 9999999764
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=94.89 E-value=0.012 Score=65.98 Aligned_cols=33 Identities=18% Similarity=0.319 Sum_probs=30.7
Q ss_pred cEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCC
Q psy2951 1068 TFIVVGGGPSGATCVETLRQNGFTGKLYFITDENF 1102 (1466)
Q Consensus 1068 ~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~ 1102 (1466)
+|||||+|++|+.+|.+|+++|+ +|+|+|+...
T Consensus 4 ~VIVVGsG~aG~v~A~rLaeaG~--~VlvLEaG~~ 36 (367)
T d1n4wa1 4 PAVVIGTGYGAAVSALRLGEAGV--QTLMLEMGQL 36 (367)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC--CEEEEESSCC
T ss_pred eEEEeCcCHHHHHHHHHHHHCcC--eEEEEecCCC
Confidence 69999999999999999999999 9999999753
|
| >d1xdia2 d.87.1.1 (A:349-466) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.76 E-value=0.012 Score=53.02 Aligned_cols=52 Identities=12% Similarity=0.053 Sum_probs=44.4
Q ss_pred CCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 392 EALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 392 ~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
+..+|.+++.+ +++|+|++++|. +++++.++ .+|+.+.+. ++++|||++|.+
T Consensus 49 ~~~G~vKlv~d~~~~~ilGa~ivG~~A~elI~~~~-~ai~~~~t~~~l~~~i~~hPT~sE~l 109 (118)
T d1xdia2 49 MRHGFVKIFCRRSTGVVIGGVVVAPIASELILPIA-VAVQNRITVNELAQTLAVYPSLSGSI 109 (118)
T ss_dssp CSSCEEEEEEETTTCBEEEEEEEETTHHHHHHHHH-HHHHHTCBHHHHHTSBCCSSSTHHHH
T ss_pred cchhheEEEEecCCCceEEEEEEcCcHHHHHHHHH-HHHHcCCCHHHHhhCCCCCCCHHHHH
Confidence 36789998886 489999999998 56777777 999998886 799999999998
|
| >d1ebda3 d.87.1.1 (A:347-461) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.71 E-value=0.017 Score=51.72 Aligned_cols=52 Identities=15% Similarity=0.263 Sum_probs=44.2
Q ss_pred CCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-----ccccCcccchhh
Q psy2951 392 EALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-----LPHSHRCLGVVL 444 (1466)
Q Consensus 392 ~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-----~~~~~p~~~e~~ 444 (1466)
+..+|.+++.+ +++|+|++++|. +++++.++ .+|+.+.+. ++++|||++|.+
T Consensus 47 ~~~G~vKli~~~~~~~iLG~~ivg~~A~elI~~~~-~ai~~~~t~~~l~~~i~~hPT~sE~~ 107 (115)
T d1ebda3 47 DTDGFLKLVVRKEDGVIIGAQIIGPNASDMIAELG-LAIEAGMTAEDIALTIHAHPTLGEIA 107 (115)
T ss_dssp CCCCEEEEEEETTTTEEEEEEEESTTHHHHHHHHH-HHHHHTCBHHHHHHSCCCTTSSTHHH
T ss_pred CCcEEEEEEEeCCcceEEEEEEEcCCHHHHHHHHH-HHHHcCCCHHHHhhCCCCCCCHHHHH
Confidence 36789988876 489999999999 56777777 999999876 899999999988
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=94.63 E-value=0.012 Score=65.66 Aligned_cols=35 Identities=23% Similarity=0.545 Sum_probs=31.6
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 630 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~ 630 (1466)
+.+|+||||+|+||..+|.+|++.|++ |+++|+.+
T Consensus 1 t~YD~IIVGsG~aG~v~A~rLae~g~~--VlvLEaG~ 35 (360)
T d1kdga1 1 TPYDYIIVGAGPGGIIAADRLSEAGKK--VLLLERGG 35 (360)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCC--EEEECSSC
T ss_pred CcCCEEEECcCHHHHHHHHHHhhCCCe--EEEEEccC
Confidence 368999999999999999999999987 88888874
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=94.48 E-value=0.016 Score=64.99 Aligned_cols=35 Identities=23% Similarity=0.357 Sum_probs=32.0
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCC
Q psy2951 1065 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 1101 (1466)
Q Consensus 1065 ~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~ 1101 (1466)
...++||||+|++|+.+|.+|.++|. +|+|+|+..
T Consensus 6 ~~~dvIVVGsG~aG~v~A~rLaeaG~--~VlvLEaG~ 40 (370)
T d3coxa1 6 DRVPALVIGSGYGGAVAALRLTQAGI--PTQIVEMGR 40 (370)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTC--CEEEECSSC
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCC--eEEEEeCCC
Confidence 35689999999999999999999998 999999864
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=94.40 E-value=0.021 Score=48.96 Aligned_cols=35 Identities=17% Similarity=0.390 Sum_probs=31.6
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCC
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENF 1102 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~ 1102 (1466)
.++|+|+|.|.+|+++|..|.++|. +|+++|..+.
T Consensus 5 ~K~v~ViGlG~sG~s~a~~L~~~g~--~v~~~D~~~~ 39 (93)
T d2jfga1 5 GKNVVIIGLGLTGLSCVDFFLARGV--TPRVMDTRMT 39 (93)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHTTC--CCEEEESSSS
T ss_pred CCEEEEEeECHHHHHHHHHHHHCCC--EEEEeeCCcC
Confidence 4689999999999999999999998 9999987653
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=94.28 E-value=0.016 Score=64.48 Aligned_cols=35 Identities=26% Similarity=0.533 Sum_probs=32.2
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCC
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENF 1102 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~ 1102 (1466)
.+++||||+|.||..+|.+|.+.|. +|.|+|+...
T Consensus 2 ~YD~IIVGsG~aG~v~A~rLae~g~--~VlvLEaG~~ 36 (360)
T d1kdga1 2 PYDYIIVGAGPGGIIAADRLSEAGK--KVLLLERGGP 36 (360)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTC--CEEEECSSCC
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCC--eEEEEEccCC
Confidence 4789999999999999999999998 9999999853
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=94.28 E-value=0.022 Score=48.72 Aligned_cols=34 Identities=21% Similarity=0.474 Sum_probs=29.3
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE 629 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~ 629 (1466)
..++|+|+|.|-+|+++|..|.++|.+ |++.+..
T Consensus 4 ~~K~v~ViGlG~sG~s~a~~L~~~g~~--v~~~D~~ 37 (93)
T d2jfga1 4 QGKNVVIIGLGLTGLSCVDFFLARGVT--PRVMDTR 37 (93)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCC--CEEEESS
T ss_pred CCCEEEEEeECHHHHHHHHHHHHCCCE--EEEeeCC
Confidence 468899999999999999999999988 5555554
|
| >d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=94.12 E-value=0.082 Score=48.96 Aligned_cols=95 Identities=13% Similarity=0.081 Sum_probs=61.6
Q ss_pred CCCCCcEEEEC-CC-----h----HHHHHHHHHhccC--CeEEEEeecCccC-ccccCHHHHHHHHHHHHhcCcEEEccc
Q psy2951 731 ITPESNVVVIG-SS-----F----IGMEAAAFCASKV--KSVTVVGRGAVPF-QESLGKEVGERITKLFESKGVKFVMKA 797 (1466)
Q Consensus 731 ~~~~~~vvVvG-~G-----~----~g~e~A~~l~~~g--~~V~lv~~~~~~~-~~~~~~~~~~~~~~~l~~~gv~~~~~~ 797 (1466)
+..|.++++.- ++ . .++.++..|+++| .++.++...+... .+.+.+.+.+.+.+.+++.||+++.+.
T Consensus 30 ~~~Gg~vv~t~p~~P~kCpgAP~e~a~l~~~~lr~~g~r~kv~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~ 109 (141)
T d1fcda2 30 MADGGTVVIAPPAAPFRCPPGPYERASQVAYYLKAHKPMSKVIILDSSQTFSKQSQFSKGWERLYGFGTENAMIEWHPGP 109 (141)
T ss_dssp SCTTCCEEEECCCSSCSSTTHHHHHHHHHHHHHGGGCSCCCEEEECSCSSCTTHHHHHHHHHHHHCSTTSSCSEEEECSS
T ss_pred cccCCeEEEecCCCCccCCchHHHHHHHHHHHHHHcCCCCcEEEEecCCCCccCCcccHHHHHHHHHHHHhcCceeeecC
Confidence 34577776652 22 2 3445556777775 5678877766432 122234556667777788999999876
Q ss_pred e--EEEEEecCCCceEEEECCCCcEEecCEEEEc
Q psy2951 798 N--VSSFEKNEKNDVTAANLDNGTTIPADLVIVG 829 (1466)
Q Consensus 798 ~--v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a 829 (1466)
. +.+++... + .+++.+|+++++|++++.
T Consensus 110 ~~~~v~vd~~~--~--~~~~~~Ge~v~yD~l~vv 139 (141)
T d1fcda2 110 DSAVVKVDGGE--M--MVETAFGDEFKADVINLI 139 (141)
T ss_dssp TTCEEEEEETT--T--EEEETTCCEEECSEEEEC
T ss_pred CceEEeecCCc--E--EEEeCCCcEEeeeEEEeC
Confidence 4 66666322 2 567889999999999874
|
| >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Penicillium amagasakiense [TaxId: 63559]
Probab=93.80 E-value=0.015 Score=65.47 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=29.8
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcC-CCCcEEEEcC
Q psy2951 42 NKDTFIVVGGGPSGATCVETLRQNG-FTGKLYFITD 76 (1466)
Q Consensus 42 ~~~dVvIIGgG~AGl~aA~~l~~~g-~~v~i~~~~~ 76 (1466)
+.||+||||||+||...|.+|++.| .+|.|+|...
T Consensus 23 ~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~ 58 (391)
T d1gpea1 23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGF 58 (391)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSC
T ss_pred CeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence 4699999999999999999999988 5777766554
|
| >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Penicillium amagasakiense [TaxId: 63559]
Probab=93.51 E-value=0.026 Score=63.41 Aligned_cols=36 Identities=25% Similarity=0.499 Sum_probs=31.3
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcC-CCccEEEEcCCCC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNG-FTGKLYFITDENF 631 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g-~~~~v~~~~~~~~ 631 (1466)
+.+|+||||||+||+..|.+|++.+ .+ |+++|+.+.
T Consensus 23 ~tyD~IIVGsG~aG~vlA~rLae~~~~~--VLlLEaG~~ 59 (391)
T d1gpea1 23 KTYDYIIAGGGLTGLTVAAKLTENPKIK--VLVIEKGFY 59 (391)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTSTTCC--EEEEESSCC
T ss_pred CeeeEEEECcCHHHHHHHHHHHHCCCCe--EEEEcCCCC
Confidence 4599999999999999999999987 45 888888753
|
| >d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Aspergillus niger [TaxId: 5061]
Probab=93.17 E-value=0.02 Score=64.27 Aligned_cols=35 Identities=26% Similarity=0.399 Sum_probs=29.0
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcC-CCCcEEEEc
Q psy2951 41 GNKDTFIVVGGGPSGATCVETLRQNG-FTGKLYFIT 75 (1466)
Q Consensus 41 ~~~~dVvIIGgG~AGl~aA~~l~~~g-~~v~i~~~~ 75 (1466)
.+.||+||||||.||...|.+|++.+ .+|.|+|..
T Consensus 15 ~~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG 50 (385)
T d1cf3a1 15 GRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESG 50 (385)
T ss_dssp TCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESS
T ss_pred CCeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCC
Confidence 34699999999999999999999876 566666654
|
| >d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Hydroxynitrile lyase species: Almond (Prunus dulcis) [TaxId: 3755]
Probab=93.12 E-value=0.017 Score=63.88 Aligned_cols=35 Identities=26% Similarity=0.608 Sum_probs=31.2
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCC
Q psy2951 1065 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENF 1102 (1466)
Q Consensus 1065 ~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~ 1102 (1466)
..+++||||+|.||+.+|.+|++. + +|.|||+.+.
T Consensus 25 ~~YD~IIVGsG~aG~vlA~rLae~-~--kVLvLEaG~~ 59 (351)
T d1ju2a1 25 GSYDYVIVGGGTSGCPLAATLSEK-Y--KVLVLERGSL 59 (351)
T ss_dssp EEEEEEEECCSTTHHHHHHHHTTT-S--CEEEECSSBC
T ss_pred CCccEEEECccHHHHHHHHHhcCC-C--CEEEEecCCC
Confidence 457999999999999999999986 6 8999999864
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=93.03 E-value=0.033 Score=54.68 Aligned_cols=34 Identities=15% Similarity=0.308 Sum_probs=31.7
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCC
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 1101 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~ 1101 (1466)
.++|+|||+|..|..+|..|.+.|+ +|+|+++..
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~g~--~V~v~dr~~ 35 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDSGI--KVTVACRTL 35 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTC--EEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC--EEEEEECCh
Confidence 5789999999999999999999999 999999874
|
| >d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Aspergillus niger [TaxId: 5061]
Probab=93.03 E-value=0.03 Score=62.85 Aligned_cols=37 Identities=27% Similarity=0.581 Sum_probs=31.3
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcC-CCccEEEEcCCCC
Q psy2951 593 GNKDTFIVVGGGPSGATCVETLRQNG-FTGKLYFITDENF 631 (1466)
Q Consensus 593 ~~~~~vvVIGgG~AGl~aA~~l~~~g-~~~~v~~~~~~~~ 631 (1466)
.+.+|+||||||+||+..|.+|++.+ ++ |+++|+.+.
T Consensus 15 ~~tyD~IIVGsG~aG~vlA~rLse~~~~~--VLvLEaG~~ 52 (385)
T d1cf3a1 15 GRTVDYIIAGGGLTGLTTAARLTENPNIS--VLVIESGSY 52 (385)
T ss_dssp TCEEEEEEECCSHHHHHHHHHHTTSTTCC--EEEEESSCC
T ss_pred CCeEEEEEECcCHHHHHHHHHHHHCCCCe--EEEECCCCC
Confidence 34599999999999999999999876 45 888988753
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=92.87 E-value=0.11 Score=46.04 Aligned_cols=34 Identities=12% Similarity=0.145 Sum_probs=31.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCC
Q psy2951 1205 ESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGA 1238 (1466)
Q Consensus 1205 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~ 1238 (1466)
+|+|+|||+|.+|..-+..|.+.|++|+++.+..
T Consensus 12 ~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~ 45 (113)
T d1pjqa1 12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALTF 45 (113)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 8999999999999999999999999999998654
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=92.79 E-value=0.12 Score=45.80 Aligned_cols=35 Identities=11% Similarity=0.133 Sum_probs=32.1
Q ss_pred CCCcEEEECCChHHHHHHHHHhccCCeEEEEeecC
Q psy2951 733 PESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGA 767 (1466)
Q Consensus 733 ~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~ 767 (1466)
++|+|+|||+|.+|..-|..|.+.|.+|+++....
T Consensus 11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~ 45 (113)
T d1pjqa1 11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALTF 45 (113)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 48999999999999999999999999999987653
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.75 E-value=0.034 Score=52.66 Aligned_cols=35 Identities=14% Similarity=0.211 Sum_probs=32.5
Q ss_pred CCCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCC
Q psy2951 1204 PESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGA 1238 (1466)
Q Consensus 1204 ~~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~ 1238 (1466)
.+|+|+|||||.+|.+-+..|.+.|.+|+++.+..
T Consensus 12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~~ 46 (150)
T d1kyqa1 12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL 46 (150)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 38999999999999999999999999999997653
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.49 E-value=0.043 Score=51.89 Aligned_cols=34 Identities=15% Similarity=0.229 Sum_probs=32.1
Q ss_pred CCCcEEEECCChHHHHHHHHHhccCCeEEEEeec
Q psy2951 733 PESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRG 766 (1466)
Q Consensus 733 ~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~ 766 (1466)
++|+|+|||||.+|.+-|..|.+.|.+||++.+.
T Consensus 12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~ 45 (150)
T d1kyqa1 12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD 45 (150)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4899999999999999999999999999999765
|
| >d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Hydroxynitrile lyase species: Almond (Prunus dulcis) [TaxId: 3755]
Probab=92.08 E-value=0.033 Score=61.44 Aligned_cols=34 Identities=24% Similarity=0.576 Sum_probs=29.7
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 630 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~ 630 (1466)
..+|+||||+|+||+.+|.+|++. ++ |+++|+.+
T Consensus 25 ~~YD~IIVGsG~aG~vlA~rLae~-~k--VLvLEaG~ 58 (351)
T d1ju2a1 25 GSYDYVIVGGGTSGCPLAATLSEK-YK--VLVLERGS 58 (351)
T ss_dssp EEEEEEEECCSTTHHHHHHHHTTT-SC--EEEECSSB
T ss_pred CCccEEEECccHHHHHHHHHhcCC-CC--EEEEecCC
Confidence 358999999999999999999975 55 99999875
|
| >d1m6ia3 d.87.1.1 (A:478-608) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.48 E-value=0.22 Score=43.20 Aligned_cols=34 Identities=12% Similarity=0.094 Sum_probs=25.6
Q ss_pred EEEEEEcCCEEEEEEEECCCHHHHHHHHHHhcCCC
Q psy2951 396 FTAYYSNADKVLAILTVGMDPLAAQFAEQVLEFPY 430 (1466)
Q Consensus 396 ~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~i~~~~ 430 (1466)
=+.||+++++|+|+++||. -....+||++|..+.
T Consensus 86 GVIFYLrd~~VVGVLLWNv-Fnrm~iAR~iI~~~~ 119 (131)
T d1m6ia3 86 GVIFYLRDKVVVGIVLWNI-FNRMPIARKIIKDGE 119 (131)
T ss_dssp EEEEEEETTEEEEEEEESC-CSCHHHHHHHHHHCC
T ss_pred eEEEEecCCcEEEEEEecc-cCccHHHHHHHHcCC
Confidence 3579999999999999997 334556667776544
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=91.43 E-value=0.086 Score=49.10 Aligned_cols=37 Identities=19% Similarity=0.425 Sum_probs=32.9
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCC
Q psy2951 1065 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 1101 (1466)
Q Consensus 1065 ~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~ 1101 (1466)
++.+|+|||+|.-|.++|..|...+...++.|+|.++
T Consensus 4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~ 40 (146)
T d1ez4a1 4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK 40 (146)
T ss_dssp TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence 4568999999999999999999999877999998654
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=91.38 E-value=0.081 Score=51.91 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=31.1
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCC
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 1101 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~ 1101 (1466)
+++|.|||+|..|++.|..|.++|+ +|+++++.+
T Consensus 1 sk~iaIiGaG~~G~~~A~~l~~~G~--~V~~~~r~~ 34 (184)
T d1bg6a2 1 SKTYAVLGLGNGGHAFAAYLALKGQ--SVLAWDIDA 34 (184)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCH
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC--EEEEEECCH
Confidence 3689999999999999999999999 999998754
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=91.20 E-value=0.063 Score=52.54 Aligned_cols=33 Identities=12% Similarity=0.317 Sum_probs=30.1
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE 629 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~ 629 (1466)
.++|+|||+|..|...|..|++.|++ |++++++
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~g~~--V~v~dr~ 34 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDSGIK--VTVACRT 34 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTCE--EEEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCE--EEEEECC
Confidence 58999999999999999999999987 7888775
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=90.79 E-value=0.12 Score=48.49 Aligned_cols=35 Identities=14% Similarity=0.282 Sum_probs=31.5
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCC
Q psy2951 1065 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 1101 (1466)
Q Consensus 1065 ~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~ 1101 (1466)
...+|+|||+|.+|+.|+..+++.|. +|+++|.+.
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA--~V~~~D~~~ 65 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGA--QVQIFDINV 65 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCC--EEEEEeCcH
Confidence 35689999999999999999999998 999998753
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=90.76 E-value=0.095 Score=51.40 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=29.3
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE 629 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~ 629 (1466)
+++|.|||+|..|+..|..|+++|++ |+++++.
T Consensus 1 sk~iaIiGaG~~G~~~A~~l~~~G~~--V~~~~r~ 33 (184)
T d1bg6a2 1 SKTYAVLGLGNGGHAFAAYLALKGQS--VLAWDID 33 (184)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCE--EEEECSC
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCE--EEEEECC
Confidence 47899999999999999999999987 7777664
|
| >d1mo9a3 d.87.1.1 (A:384-523) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=90.44 E-value=0.11 Score=48.14 Aligned_cols=52 Identities=13% Similarity=0.051 Sum_probs=42.8
Q ss_pred CCCeEEEEEEc--CCEEEEEEEECC--CHHHHHHHHHHhcCCCcc-------ccccCcccchhh
Q psy2951 392 EALKFTAYYSN--ADKVLAILTVGM--DPLAAQFAEQVLEFPYSS-------LPHSHRCLGVVL 444 (1466)
Q Consensus 392 ~~~~~~~~~~~--~~~i~g~~~~~~--~~~~~~~~~~~i~~~~~~-------~~~~~p~~~e~~ 444 (1466)
+..||.+++.+ +++|+|++++|. +++++.++ .+|..+.+. .+++|||..|.+
T Consensus 65 ~~~G~vKlv~d~~t~~IlGa~ivG~~A~ElI~~~~-~ai~~~~t~~dl~~~~~i~~hPT~~~~l 127 (140)
T d1mo9a3 65 HMSGFQKIVIDAKTRKVLGAHHVGYGAKDAFQYLN-VLIKQGLTVDELGDMDELFLNPTHFIQL 127 (140)
T ss_dssp GGGCEEEEEEETTTCBEEEEEEEESSCHHHHHHHH-HHHHTTCBHHHHHTSCCCSSCSCCHHHH
T ss_pred CCCceEEEEEecCCCcEEEEEEECCCHHHHHHHHH-HHHHcCCCHHHHHhcCCCCCCCChHHHH
Confidence 46789999886 489999999999 45666666 999999876 378999999887
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=90.30 E-value=0.15 Score=48.56 Aligned_cols=34 Identities=18% Similarity=0.242 Sum_probs=31.0
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCC
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 1101 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~ 1101 (1466)
..+|+|||+|.+|+.||......|. .|+++|.+.
T Consensus 29 pa~VvViGaGvaG~~Aa~~A~~lGA--~V~v~D~~~ 62 (183)
T d1l7da1 29 PARVLVFGVGVAGLQAIATAKRLGA--VVMATDVRA 62 (183)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCS
T ss_pred CcEEEEEcCcHHHHHHHHHHHHcCC--EEEEEeccH
Confidence 4689999999999999999999998 999998765
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.78 E-value=0.16 Score=49.96 Aligned_cols=34 Identities=26% Similarity=0.390 Sum_probs=31.6
Q ss_pred CcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCc
Q psy2951 183 SNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAV 216 (1466)
Q Consensus 183 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 216 (1466)
|+|+|||+|..|..+|..++..|.+|+++++.+.
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~ 38 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED 38 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 6899999999999999999999999999988753
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=89.73 E-value=0.16 Score=47.13 Aligned_cols=37 Identities=19% Similarity=0.404 Sum_probs=32.7
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCC
Q psy2951 593 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE 629 (1466)
Q Consensus 593 ~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~ 629 (1466)
++++||.|||+|.-|.+.|+.|+..|.-.+|.+++.+
T Consensus 3 ~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~ 39 (146)
T d1ez4a1 3 PNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV 39 (146)
T ss_dssp TTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecc
Confidence 3468999999999999999999999976679999865
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.68 E-value=0.15 Score=50.10 Aligned_cols=35 Identities=26% Similarity=0.361 Sum_probs=32.5
Q ss_pred CCcEEEECCChHHHHHHHHHhccCCeEEEEeecCc
Q psy2951 734 ESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAV 768 (1466)
Q Consensus 734 ~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~ 768 (1466)
=|+|+|||+|.+|..+|..++..|.+|+++++++.
T Consensus 4 IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~ 38 (192)
T d1f0ya2 4 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED 38 (192)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred eEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 37999999999999999999999999999998864
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=89.66 E-value=0.15 Score=47.77 Aligned_cols=35 Identities=14% Similarity=0.257 Sum_probs=29.5
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCC
Q psy2951 593 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE 629 (1466)
Q Consensus 593 ~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~ 629 (1466)
-.+-+|+|||+|.+|+.|+..+++.|-. |+++|.+
T Consensus 30 v~pa~V~ViGaGvaG~~A~~~A~~lGA~--V~~~D~~ 64 (168)
T d1pjca1 30 VKPGKVVILGGGVVGTEAAKMAVGLGAQ--VQIFDIN 64 (168)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTCE--EEEEESC
T ss_pred CCCcEEEEECCChHHHHHHHHHhhCCCE--EEEEeCc
Confidence 3468999999999999999999999987 5555543
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=89.61 E-value=0.15 Score=42.59 Aligned_cols=73 Identities=18% Similarity=0.133 Sum_probs=52.5
Q ss_pred CcEEEECCChHHH-HHHHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCceEEE
Q psy2951 735 SNVVVIGSSFIGM-EAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAA 813 (1466)
Q Consensus 735 ~~vvVvG~G~~g~-e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~v 813 (1466)
.||-+||-|-+|| -+|..|.++|.+|+-.++.+. + ..+.|++.|+++..+.... .+
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~-------~-----~t~~L~~~Gi~i~~gh~~~--------~i--- 58 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEET-------E-----RTAYLRKLGIPIFVPHSAD--------NW--- 58 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCC-------H-----HHHHHHHTTCCEESSCCTT--------SC---
T ss_pred cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCC-------h-----hHHHHHHCCCeEEeeeccc--------cc---
Confidence 3688999888888 568999999999999876531 1 2345889999987654211 11
Q ss_pred ECCCCcEEecCEEEEccccccCcc
Q psy2951 814 NLDNGTTIPADLVIVGIGTVLNTN 837 (1466)
Q Consensus 814 ~~~~g~~i~~D~vi~a~G~~p~~~ 837 (1466)
-.+|+||++.+...+..
T Consensus 59 -------~~~d~vV~SsAI~~~np 75 (89)
T d1j6ua1 59 -------YDPDLVIKTPAVRDDNP 75 (89)
T ss_dssp -------CCCSEEEECTTCCTTCH
T ss_pred -------CCCCEEEEecCcCCCCH
Confidence 24799999988876544
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=89.52 E-value=0.21 Score=47.02 Aligned_cols=36 Identities=19% Similarity=0.380 Sum_probs=33.0
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCC
Q psy2951 1065 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE 1100 (1466)
Q Consensus 1065 ~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~ 1100 (1466)
.+++|.|||+|..|.++|..|...+...++.|+|..
T Consensus 19 ~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~ 54 (160)
T d1i0za1 19 PNNKITVVGVGQVGMACAISILGKSLADELALVDVL 54 (160)
T ss_dssp CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 357999999999999999999999998899999875
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=89.41 E-value=0.11 Score=47.68 Aligned_cols=33 Identities=24% Similarity=0.430 Sum_probs=30.4
Q ss_pred CcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCC
Q psy2951 1067 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 1101 (1466)
Q Consensus 1067 ~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~ 1101 (1466)
++++|+|.|..|...|..|.+.|. +|++||+++
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~--~vvvid~d~ 33 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGH--EVLAVDINE 33 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTC--CCEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC--eEEEecCcH
Confidence 479999999999999999999999 999998764
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=89.36 E-value=0.19 Score=41.80 Aligned_cols=81 Identities=17% Similarity=0.098 Sum_probs=54.8
Q ss_pred CeEEEEcCCHHHH-HHHHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEE
Q psy2951 1206 SNVVVIGSSFIGM-EAAAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKNDVTAA 1284 (1466)
Q Consensus 1206 ~~vvVvG~g~~g~-e~a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~~~~v 1284 (1466)
.+|-+||-|-+|| -+|..|.++|.+|+-.++... ...+.|++.|+++..+... + .
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~------------~~t~~L~~~Gi~i~~gh~~-------~-~---- 57 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEET------------ERTAYLRKLGIPIFVPHSA-------D-N---- 57 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCC------------HHHHHHHHTTCCEESSCCT-------T-S----
T ss_pred cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCC------------hhHHHHHHCCCeEEeeecc-------c-c----
Confidence 3678888777777 468899999999999987641 1223588999998765321 1 1
Q ss_pred EcCCCCeeecCEEEEeeccccCcc---ccccCCce
Q psy2951 1285 NLDNGTTIPADLVIVGIGTVLNTN---YLDGKGVE 1316 (1466)
Q Consensus 1285 ~l~~g~~i~~D~vv~a~G~~p~~~---~~~~~gl~ 1316 (1466)
.-.+|+||++.++..+.+ .+++.|++
T Consensus 58 ------i~~~d~vV~SsAI~~~npel~~A~~~gIp 86 (89)
T d1j6ua1 58 ------WYDPDLVIKTPAVRDDNPEIVRARMERVP 86 (89)
T ss_dssp ------CCCCSEEEECTTCCTTCHHHHHHHHTTCC
T ss_pred ------cCCCCEEEEecCcCCCCHHHHHHHHcCCC
Confidence 125899999888765544 23445554
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=89.18 E-value=0.13 Score=43.81 Aligned_cols=76 Identities=14% Similarity=0.107 Sum_probs=54.4
Q ss_pred CCCCCcEEEECCChHHHHH-HHHHhccCCeEEEEeecCccCccccCHHHHHHHHHHHHhcCcEEEccceEEEEEecCCCc
Q psy2951 731 ITPESNVVVIGSSFIGMEA-AAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKND 809 (1466)
Q Consensus 731 ~~~~~~vvVvG~G~~g~e~-A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~ 809 (1466)
+...+++-+||-|-+||-. |..|.++|.+|+-.++... +. .+.|.+.|+++..+.....+
T Consensus 5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~-------~~-----~~~L~~~Gi~v~~g~~~~~i------- 65 (96)
T d1p3da1 5 MRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADG-------VV-----TQRLAQAGAKIYIGHAEEHI------- 65 (96)
T ss_dssp CTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCS-------HH-----HHHHHHTTCEEEESCCGGGG-------
T ss_pred chhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCC-------hh-----hhHHHHCCCeEEECCccccC-------
Confidence 3457999999988888765 9999999999999876531 11 35567789998765432111
Q ss_pred eEEEECCCCcEEecCEEEEccccccCc
Q psy2951 810 VTAANLDNGTTIPADLVIVGIGTVLNT 836 (1466)
Q Consensus 810 ~~~v~~~~g~~i~~D~vi~a~G~~p~~ 836 (1466)
-.+|+||.+.+...+.
T Consensus 66 -----------~~~d~vV~S~AI~~~n 81 (96)
T d1p3da1 66 -----------EGASVVVVSSAIKDDN 81 (96)
T ss_dssp -----------TTCSEEEECTTSCTTC
T ss_pred -----------CCCCEEEECCCcCCCC
Confidence 1368999998876543
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=89.07 E-value=0.1 Score=44.44 Aligned_cols=76 Identities=14% Similarity=0.122 Sum_probs=53.3
Q ss_pred cCCCCeEEEEcCCHHHHHH-HHHHhcCCCeEEEEcCCCcCCcccccHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCc
Q psy2951 1202 ITPESNVVVIGSSFIGMEA-AAFCASKVKSVTVVGRGAVPFQESLGKEVGERITKLFESKGVKFVMKANVSSFEKNEKND 1280 (1466)
Q Consensus 1202 ~~~~~~vvVvG~g~~g~e~-a~~l~~~g~~v~vv~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~~v~~i~~~~~g~ 1280 (1466)
+...+++-+||-|-+||-. |..|.++|.+|+-.+.... + ..+.+++.|+++..+.....
T Consensus 5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~-------~-----~~~~L~~~Gi~v~~g~~~~~-------- 64 (96)
T d1p3da1 5 MRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADG-------V-----VTQRLAQAGAKIYIGHAEEH-------- 64 (96)
T ss_dssp CTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCS-------H-----HHHHHHHTTCEEEESCCGGG--------
T ss_pred chhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCC-------h-----hhhHHHHCCCeEEECCcccc--------
Confidence 4457899999988888765 8999999999999987641 1 12446678998875432110
Q ss_pred EEEEEcCCCCeeecCEEEEeeccccCc
Q psy2951 1281 VTAANLDNGTTIPADLVIVGIGTVLNT 1307 (1466)
Q Consensus 1281 ~~~v~l~~g~~i~~D~vv~a~G~~p~~ 1307 (1466)
.-.+|+||++.+...+.
T Consensus 65 ----------i~~~d~vV~S~AI~~~n 81 (96)
T d1p3da1 65 ----------IEGASVVVVSSAIKDDN 81 (96)
T ss_dssp ----------GTTCSEEEECTTSCTTC
T ss_pred ----------CCCCCEEEECCCcCCCC
Confidence 11479999988876643
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=88.93 E-value=0.2 Score=47.66 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=28.7
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE 629 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~ 629 (1466)
+-+|+|||+|.+|+.||..+.+.|.. |+++|.+
T Consensus 29 pa~VvViGaGvaG~~Aa~~A~~lGA~--V~v~D~~ 61 (183)
T d1l7da1 29 PARVLVFGVGVAGLQAIATAKRLGAV--VMATDVR 61 (183)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCE--EEEECSC
T ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCE--EEEEecc
Confidence 57999999999999999999999987 6666554
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=88.80 E-value=0.15 Score=46.68 Aligned_cols=32 Identities=25% Similarity=0.439 Sum_probs=29.9
Q ss_pred cEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCC
Q psy2951 1068 TFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 1101 (1466)
Q Consensus 1068 ~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~ 1101 (1466)
+|+|+|+|.-|...|..|.+.|+ +|++||+++
T Consensus 2 ~IvI~G~G~~G~~la~~L~~~g~--~v~vid~d~ 33 (132)
T d1lssa_ 2 YIIIAGIGRVGYTLAKSLSEKGH--DIVLIDIDK 33 (132)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred EEEEECCCHHHHHHHHHHHHCCC--CcceecCCh
Confidence 69999999999999999999998 999998865
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=88.27 E-value=0.22 Score=46.17 Aligned_cols=35 Identities=23% Similarity=0.380 Sum_probs=31.5
Q ss_pred CcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCC
Q psy2951 1067 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 1101 (1466)
Q Consensus 1067 ~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~ 1101 (1466)
++|.|||+|..|.++|..|..++...++.|+|...
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~ 36 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE 36 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 68999999999999999999999878999998643
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=87.94 E-value=0.18 Score=49.19 Aligned_cols=34 Identities=21% Similarity=0.206 Sum_probs=31.3
Q ss_pred CcEEEECCCHhHHHHHHHHhhCCCEEEEEeecCc
Q psy2951 183 SNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAV 216 (1466)
Q Consensus 183 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 216 (1466)
++|+|||+|.+|..+|..++..|.+|+++++.+.
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~ 38 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEH 38 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 5899999999999999999999999999988643
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.61 E-value=0.36 Score=45.27 Aligned_cols=36 Identities=22% Similarity=0.482 Sum_probs=32.2
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCC
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 1101 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~ 1101 (1466)
..+|.|||+|..|.++|..|...+...++.|+|..+
T Consensus 19 ~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~ 54 (159)
T d2ldxa1 19 RCKITVVGVGDVGMACAISILLKGLADELALVDADT 54 (159)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 457999999999999999999999988999997643
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=87.49 E-value=0.47 Score=43.09 Aligned_cols=32 Identities=13% Similarity=0.238 Sum_probs=30.3
Q ss_pred eEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCC
Q psy2951 1207 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGA 1238 (1466)
Q Consensus 1207 ~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~ 1238 (1466)
+|+|+|+|.+|..+|..|.+.|.+|++++.++
T Consensus 2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~ 33 (132)
T d1lssa_ 2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK 33 (132)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCcceecCCh
Confidence 69999999999999999999999999999874
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=87.33 E-value=0.31 Score=45.35 Aligned_cols=37 Identities=24% Similarity=0.451 Sum_probs=32.7
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCC
Q psy2951 1065 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 1101 (1466)
Q Consensus 1065 ~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~ 1101 (1466)
..++|.|||+|.-|.++|..|...+...++.|+|..+
T Consensus 5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~ 41 (148)
T d1ldna1 5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE 41 (148)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence 3568999999999999999999999878999998644
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=87.23 E-value=0.21 Score=48.73 Aligned_cols=35 Identities=20% Similarity=0.182 Sum_probs=32.4
Q ss_pred CCcEEEECCChHHHHHHHHHhccCCeEEEEeecCc
Q psy2951 734 ESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAV 768 (1466)
Q Consensus 734 ~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~ 768 (1466)
=++|+|||+|.+|..+|..++..|.+|+++++++.
T Consensus 4 I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~ 38 (186)
T d1wdka3 4 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEH 38 (186)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 47899999999999999999999999999998763
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=86.89 E-value=0.33 Score=42.93 Aligned_cols=37 Identities=24% Similarity=0.624 Sum_probs=31.6
Q ss_pred CCCCCeEEEEcCch-----------HHHHHHHHHHHcCCCccEEEEcCCC
Q psy2951 592 SGNKDTFIVVGGGP-----------SGATCVETLRQNGFTGKLYFITDEN 630 (1466)
Q Consensus 592 ~~~~~~vvVIGgG~-----------AGl~aA~~l~~~g~~~~v~~~~~~~ 630 (1466)
.+..++|+|||+|| ++..|+..|++.|++ ++++..++
T Consensus 4 ~~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~--~iliN~NP 51 (127)
T d1a9xa3 4 RTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYR--VINVNSNP 51 (127)
T ss_dssp CSSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCE--EEEECSCT
T ss_pred CCCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCe--EEEecCch
Confidence 34579999999996 789999999999998 88887764
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=86.88 E-value=0.44 Score=41.54 Aligned_cols=36 Identities=22% Similarity=0.562 Sum_probs=31.3
Q ss_pred CCCcEEEECCch-----------HHHHHHHHHHhcCCCCcEEEEcCCCC
Q psy2951 1065 NKDTFIVVGGGP-----------SGATCVETLRQNGFTGKLYFITDENF 1102 (1466)
Q Consensus 1065 ~~~~vvIVG~G~-----------aGl~aA~~L~~~g~~~~i~li~~~~~ 1102 (1466)
+.++|+|||+|+ ++..|+.+|++.|+ +++|+..+|.
T Consensus 3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~--~~IliN~NPe 49 (121)
T d1a9xa4 3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGY--ETIMVNCNPE 49 (121)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTC--EEEEECCCTT
T ss_pred CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCC--eEEEEecChh
Confidence 467899999994 88999999999999 9999976653
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=86.71 E-value=0.38 Score=42.56 Aligned_cols=37 Identities=24% Similarity=0.631 Sum_probs=31.9
Q ss_pred CCCCcEEEECCch-----------HHHHHHHHHHhcCCCCcEEEEcCCCC
Q psy2951 1064 GNKDTFIVVGGGP-----------SGATCVETLRQNGFTGKLYFITDENF 1102 (1466)
Q Consensus 1064 ~~~~~vvIVG~G~-----------aGl~aA~~L~~~g~~~~i~li~~~~~ 1102 (1466)
.+.++|+|+|+|+ ++..|+.+|++.|+ ++.++..+|.
T Consensus 5 ~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~--~~iliN~NP~ 52 (127)
T d1a9xa3 5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGY--RVINVNSNPA 52 (127)
T ss_dssp SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTC--EEEEECSCTT
T ss_pred CCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCC--eEEEecCchH
Confidence 3467899999986 78999999999999 9999977653
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=86.71 E-value=0.4 Score=44.86 Aligned_cols=37 Identities=11% Similarity=0.115 Sum_probs=31.9
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCC
Q psy2951 592 SGNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE 629 (1466)
Q Consensus 592 ~~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~ 629 (1466)
..+++||.|||+|.-|.++|+.|+..+.. ++++++.+
T Consensus 4 ~~k~~KI~IIGaG~VG~~lA~~l~~~~~~-el~L~D~~ 40 (154)
T d1pzga1 4 VQRRKKVAMIGSGMIGGTMGYLCALRELA-DVVLYDVV 40 (154)
T ss_dssp CSCCCEEEEECCSHHHHHHHHHHHHHTCC-EEEEECSS
T ss_pred ccCCCcEEEECCCHHHHHHHHHHHhCCCc-eEEEEEec
Confidence 35679999999999999999999999874 78888755
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=86.51 E-value=0.3 Score=46.63 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=30.5
Q ss_pred cEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCC
Q psy2951 1068 TFIVVGGGPSGATCVETLRQNGFTGKLYFITDENF 1102 (1466)
Q Consensus 1068 ~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~ 1102 (1466)
+|+|||+|.-|...|..|.+.|+ +|+++++++.
T Consensus 2 kI~IiGaG~iG~~~a~~L~~~G~--~V~~~~r~~~ 34 (167)
T d1ks9a2 2 KITVLGCGALGQLWLTALCKQGH--EVQGWLRVPQ 34 (167)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC--EEEEECSSCC
T ss_pred EEEEECcCHHHHHHHHHHHHCCC--ceEEEEcCHH
Confidence 69999999999999999999999 9999988653
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=86.39 E-value=0.39 Score=44.91 Aligned_cols=36 Identities=11% Similarity=0.143 Sum_probs=31.0
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCC
Q psy2951 1065 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 1101 (1466)
Q Consensus 1065 ~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~ 1101 (1466)
.+++|+|||+|..|.++|..|...+. .++.|+|..+
T Consensus 6 k~~KI~IIGaG~VG~~lA~~l~~~~~-~el~L~D~~~ 41 (154)
T d1pzga1 6 RRKKVAMIGSGMIGGTMGYLCALREL-ADVVLYDVVK 41 (154)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTC-CEEEEECSSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCC-ceEEEEEecc
Confidence 45789999999999999999998887 4899998654
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=86.23 E-value=0.28 Score=46.84 Aligned_cols=33 Identities=15% Similarity=0.057 Sum_probs=31.1
Q ss_pred cEEEECCChHHHHHHHHHhccCCeEEEEeecCc
Q psy2951 736 NVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAV 768 (1466)
Q Consensus 736 ~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~ 768 (1466)
||+|+|+|.+|.-+|..|++.|.+|+++.|.+.
T Consensus 2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~ 34 (167)
T d1ks9a2 2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ 34 (167)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence 699999999999999999999999999999864
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=86.15 E-value=0.39 Score=44.22 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=31.4
Q ss_pred CcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCC
Q psy2951 1067 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENF 1102 (1466)
Q Consensus 1067 ~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~ 1102 (1466)
++|+|||+|..|.++|..|..++...++.|+|..+.
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~ 37 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKE 37 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC--
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCC
Confidence 479999999999999999999998789999986653
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=85.83 E-value=0.22 Score=48.60 Aligned_cols=36 Identities=14% Similarity=0.135 Sum_probs=31.9
Q ss_pred CCCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCC
Q psy2951 1064 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 1101 (1466)
Q Consensus 1064 ~~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~ 1101 (1466)
..|.+|+|||+|.=|.+.|..|.+.|. +|+|+.+++
T Consensus 5 ~~m~KI~ViGaG~wGtAlA~~La~~g~--~V~l~~r~~ 40 (189)
T d1n1ea2 5 LYLNKAVVFGSGAFGTALAMVLSKKCR--EVCVWHMNE 40 (189)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHTTEE--EEEEECSCH
T ss_pred ceeceEEEECCCHHHHHHHHHHHHcCC--eEEEEEecH
Confidence 456789999999999999999999988 999998763
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=85.81 E-value=0.46 Score=44.46 Aligned_cols=36 Identities=22% Similarity=0.486 Sum_probs=32.1
Q ss_pred CCCCcEEEEC-CchHHHHHHHHHHhcCCCCcEEEEcCCC
Q psy2951 1064 GNKDTFIVVG-GGPSGATCVETLRQNGFTGKLYFITDEN 1101 (1466)
Q Consensus 1064 ~~~~~vvIVG-~G~aGl~aA~~L~~~g~~~~i~li~~~~ 1101 (1466)
..+++|.||| .|.-|.+.|..|++.|+ +|+++++++
T Consensus 7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~--~V~~~d~~~ 43 (152)
T d2pv7a2 7 SDIHKIVIVGGYGKLGGLFARYLRASGY--PISILDRED 43 (152)
T ss_dssp TTCCCEEEETTTSHHHHHHHHHHHTTTC--CEEEECTTC
T ss_pred CCCCeEEEEcCCCHHHHHHHHHHHHcCC--CcEeccccc
Confidence 3568999999 69999999999999999 999998754
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=85.35 E-value=0.61 Score=40.63 Aligned_cols=38 Identities=13% Similarity=0.235 Sum_probs=33.9
Q ss_pred CCCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy2951 1065 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP 1104 (1466)
Q Consensus 1065 ~~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~ 1104 (1466)
...+|.|+|||.-|...|.+.++.|+ ++.++|+++..|
T Consensus 10 ~~~kigIlGgGQL~rMla~aA~~lG~--~v~v~d~~~~~P 47 (111)
T d1kjqa2 10 AATRVMLLGSGELGKEVAIECQRLGV--EVIAVDRYADAP 47 (111)
T ss_dssp TCCEEEEESCSHHHHHHHHHHHTTTC--EEEEEESSTTCG
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHCCC--EEEEEcCCCCCc
Confidence 45689999999999999999999999 999999887644
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=85.34 E-value=0.32 Score=44.45 Aligned_cols=32 Identities=25% Similarity=0.421 Sum_probs=27.9
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCC
Q psy2951 596 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE 629 (1466)
Q Consensus 596 ~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~ 629 (1466)
|+++|||.|..|...|..|.+.|++ |++++.+
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~--vvvid~d 32 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHE--VLAVDIN 32 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCC--CEEEESC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCe--EEEecCc
Confidence 5799999999999999999999998 5566554
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=84.98 E-value=0.46 Score=43.90 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=30.8
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE 629 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~ 629 (1466)
.+||.|||+|.-|.++|+.|..+|.-.++.+++.+
T Consensus 1 ~kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~ 35 (146)
T d1hyha1 1 ARKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDAN 35 (146)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEecc
Confidence 37999999999999999999999976678888764
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=84.84 E-value=0.49 Score=43.48 Aligned_cols=34 Identities=21% Similarity=0.326 Sum_probs=31.1
Q ss_pred CcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCC
Q psy2951 1067 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE 1100 (1466)
Q Consensus 1067 ~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~ 1100 (1466)
.+|+|||+|..|.++|..|..++...++.|+|..
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~ 35 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA 35 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 4799999999999999999999998899999854
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=84.63 E-value=0.46 Score=45.49 Aligned_cols=36 Identities=31% Similarity=0.558 Sum_probs=31.6
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCC
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 1101 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~ 1101 (1466)
|++|.|||.|.-|.+.|..|++.|+..+|+.+|+++
T Consensus 1 Mk~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~ 36 (171)
T d2g5ca2 1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP 36 (171)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred CCEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence 467999999999999999999999877888887653
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=84.55 E-value=0.56 Score=43.44 Aligned_cols=37 Identities=24% Similarity=0.446 Sum_probs=32.5
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCC
Q psy2951 593 GNKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE 629 (1466)
Q Consensus 593 ~~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~ 629 (1466)
+..+||.|||+|.-|.++|+.|+..+.--++.+++..
T Consensus 4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~ 40 (148)
T d1ldna1 4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN 40 (148)
T ss_dssp TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeec
Confidence 4568999999999999999999999986678888864
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=84.21 E-value=0.73 Score=40.07 Aligned_cols=36 Identities=31% Similarity=0.346 Sum_probs=32.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcC
Q psy2951 1205 ESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP 1240 (1466)
Q Consensus 1205 ~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~ 1240 (1466)
..+|.|+|+|..|..++.++++.|.++.++++.+..
T Consensus 11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~ 46 (111)
T d1kjqa2 11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA 46 (111)
T ss_dssp CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCC
Confidence 568999999999999999999999999999987643
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=84.13 E-value=0.63 Score=40.50 Aligned_cols=36 Identities=22% Similarity=0.576 Sum_probs=30.6
Q ss_pred CCCCeEEEEcCch-----------HHHHHHHHHHHcCCCccEEEEcCCC
Q psy2951 593 GNKDTFIVVGGGP-----------SGATCVETLRQNGFTGKLYFITDEN 630 (1466)
Q Consensus 593 ~~~~~vvVIGgG~-----------AGl~aA~~l~~~g~~~~v~~~~~~~ 630 (1466)
+..++|+|||+|| ++..|+..|++.|++ ++++..++
T Consensus 2 t~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~--~IliN~NP 48 (121)
T d1a9xa4 2 TDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYE--TIMVNCNP 48 (121)
T ss_dssp SSSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCE--EEEECCCT
T ss_pred CCCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCe--EEEEecCh
Confidence 3568999999995 789999999999988 77887764
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=83.84 E-value=0.32 Score=45.81 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=30.7
Q ss_pred CCCcEEEECCChHHHHHHHHHhccCC-eEEEEeec
Q psy2951 733 PESNVVVIGSSFIGMEAAAFCASKVK-SVTVVGRG 766 (1466)
Q Consensus 733 ~~~~vvVvG~G~~g~e~A~~l~~~g~-~V~lv~~~ 766 (1466)
..++++|||+|.+|..++..|...|. ++++..|.
T Consensus 23 ~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt 57 (159)
T d1gpja2 23 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT 57 (159)
T ss_dssp TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred ccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence 58999999999999999999999986 68888776
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=83.82 E-value=0.81 Score=42.74 Aligned_cols=36 Identities=19% Similarity=0.380 Sum_probs=32.6
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE 629 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~ 629 (1466)
.++||.|||+|.-|.++|+.|...|.--++.+++..
T Consensus 19 ~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~ 54 (160)
T d1i0za1 19 PNNKITVVGVGQVGMACAISILGKSLADELALVDVL 54 (160)
T ss_dssp CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 357999999999999999999999997789999875
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=82.97 E-value=0.55 Score=37.59 Aligned_cols=35 Identities=26% Similarity=0.223 Sum_probs=32.0
Q ss_pred CeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCCcC
Q psy2951 1206 SNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGAVP 1240 (1466)
Q Consensus 1206 ~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~~~ 1240 (1466)
|+|.|+|+|-.|..++.+..+.|.++.++++.+..
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~ 36 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEP 36 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCG
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCC
Confidence 68999999999999999999999999999987633
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.81 E-value=0.84 Score=42.43 Aligned_cols=45 Identities=13% Similarity=0.044 Sum_probs=38.1
Q ss_pred HHHhhhcccCCCCeEEEEcCCHHHHHHHHHHhcCCCeEEEEcCCC
Q psy2951 1194 DANNIAPHITPESNVVVIGSSFIGMEAAAFCASKVKSVTVVGRGA 1238 (1466)
Q Consensus 1194 ~~~~l~~~~~~~~~vvVvG~g~~g~e~a~~l~~~g~~v~vv~~~~ 1238 (1466)
...+....+-.+|+++|+|-|.+|-.+|..++..|++|++.+.+|
T Consensus 13 ~~~r~t~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp 57 (163)
T d1li4a1 13 GIKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP 57 (163)
T ss_dssp HHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred HHHHHhCceecCCEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence 334444445569999999999999999999999999999999985
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=82.79 E-value=0.61 Score=42.88 Aligned_cols=34 Identities=24% Similarity=0.367 Sum_probs=30.9
Q ss_pred cEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCC
Q psy2951 1068 TFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 1101 (1466)
Q Consensus 1068 ~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~ 1101 (1466)
+|.|||+|.-|.+.|..|...+...++.|+|..+
T Consensus 2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~ 35 (142)
T d1guza1 2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE 35 (142)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCceEEEecccc
Confidence 6999999999999999999999878999998655
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=82.20 E-value=0.52 Score=37.74 Aligned_cols=37 Identities=14% Similarity=0.141 Sum_probs=32.8
Q ss_pred CCcEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCCCCC
Q psy2951 1066 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDENFLP 1104 (1466)
Q Consensus 1066 ~~~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~~~~ 1104 (1466)
+++|.|+|||.=|-..+.+.++.|+ ++.+++.++..|
T Consensus 1 ~k~vgIlG~GQLgrMl~~Aa~~LG~--~v~vldp~~~~p 37 (78)
T d3etja2 1 MKQVCVLGNGQLGRMLRQAGEPLGI--AVWPVGLDAEPA 37 (78)
T ss_dssp CEEEEEEBCSHHHHHHHHHHGGGTE--EEEEECTTSCGG
T ss_pred CCEEEEEcCCHHHHHHHHHHHHcCC--EEEEEcCCCCCc
Confidence 3689999999999999999999999 999998876544
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.14 E-value=0.87 Score=42.49 Aligned_cols=36 Identities=22% Similarity=0.486 Sum_probs=32.0
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCC
Q psy2951 594 NKDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE 629 (1466)
Q Consensus 594 ~~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~ 629 (1466)
++.||.|||+|.-|.++|+.|...+.--++.+++..
T Consensus 18 ~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~ 53 (159)
T d2ldxa1 18 SRCKITVVGVGDVGMACAISILLKGLADELALVDAD 53 (159)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSC
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 456899999999999999999999987779998765
|
| >d1nhpa3 d.87.1.1 (A:322-447) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=82.03 E-value=0.75 Score=41.23 Aligned_cols=51 Identities=2% Similarity=-0.027 Sum_probs=40.1
Q ss_pred CCeEEEEEEcC--CEEEEEEEECC---CHHHHHHHHHHhcCCCcc-----cccc-Ccccchhh
Q psy2951 393 ALKFTAYYSNA--DKVLAILTVGM---DPLAAQFAEQVLEFPYSS-----LPHS-HRCLGVVL 444 (1466)
Q Consensus 393 ~~~~~~~~~~~--~~i~g~~~~~~---~~~~~~~~~~~i~~~~~~-----~~~~-~p~~~e~~ 444 (1466)
..+|.+++.+. ++|+|++++|. ++++..++ .+|+.+.+. +.+. ||+++|.+
T Consensus 50 ~~g~~Kli~d~~t~~IlG~~ivG~~~a~e~I~~~~-~ai~~~~t~~dL~~~~~~yhPt~se~~ 111 (126)
T d1nhpa3 50 QKAWFKLVYDPETTQILGAQLMSKADLTANINAIS-LAIQAKMTIEDLAYADFFFQPAFDKPW 111 (126)
T ss_dssp CEEEEEEEECTTTCBEEEEEEEESSCCTTHHHHHH-HHHHTTCBHHHHHTCCCCCCTTTCCSS
T ss_pred cceeEEEEEECCCCCEEEEEEEechhHHHHHHHHH-HHHHcCCCHHHHhcCcccCCCCCchhH
Confidence 46888888874 79999999984 45667776 999999986 5555 79999864
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=82.00 E-value=0.47 Score=46.86 Aligned_cols=32 Identities=22% Similarity=0.312 Sum_probs=28.5
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCC
Q psy2951 596 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE 629 (1466)
Q Consensus 596 ~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~ 629 (1466)
++|.|||.|.-|+..|..|++.|++ |+.++.+
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~g~~--V~g~D~n 32 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSARGHE--VIGVDVS 32 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCE--EEEECSC
T ss_pred CEEEEECCCHhHHHHHHHHHhCCCc--EEEEeCC
Confidence 5799999999999999999999998 6777664
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=81.54 E-value=0.78 Score=42.03 Aligned_cols=36 Identities=19% Similarity=0.281 Sum_probs=31.2
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCCC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 630 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~~ 630 (1466)
+.||.|||+|.-|.++|+.|...+.-.++.+++...
T Consensus 1 r~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~ 36 (142)
T d1y6ja1 1 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK 36 (142)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccC
Confidence 368999999999999999999999866799998654
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=81.49 E-value=0.63 Score=42.79 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=30.3
Q ss_pred cEEEECC-chHHHHHHHHHHhcCCCCcEEEEcCC
Q psy2951 1068 TFIVVGG-GPSGATCVETLRQNGFTGKLYFITDE 1100 (1466)
Q Consensus 1068 ~vvIVG~-G~aGl~aA~~L~~~g~~~~i~li~~~ 1100 (1466)
+|+|||| |..|.++|..|...+.-.++.|+|.+
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~ 35 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA 35 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESS
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEecc
Confidence 7999996 99999999999999998899999864
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=80.78 E-value=0.92 Score=41.52 Aligned_cols=34 Identities=21% Similarity=0.326 Sum_probs=30.6
Q ss_pred CeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCC
Q psy2951 596 DTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE 629 (1466)
Q Consensus 596 ~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~ 629 (1466)
.||.|||+|.-|.++|+.|...+.--++.+++.+
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~ 35 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA 35 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 5899999999999999999999987789888754
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=80.67 E-value=0.71 Score=42.33 Aligned_cols=34 Identities=21% Similarity=0.155 Sum_probs=30.6
Q ss_pred cEEEECCchHHHHHHHHHHhcCCCCcEEEEcCCC
Q psy2951 1068 TFIVVGGGPSGATCVETLRQNGFTGKLYFITDEN 1101 (1466)
Q Consensus 1068 ~vvIVG~G~aGl~aA~~L~~~g~~~~i~li~~~~ 1101 (1466)
+|.|||+|..|.+.|..|..++...++.|+|.++
T Consensus 2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~ 35 (142)
T d1ojua1 2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE 35 (142)
T ss_dssp EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred EEEEECcCHHHHHHHHHHHhcCcCceEEEEeccc
Confidence 6999999999999999999999878999998543
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=80.43 E-value=0.87 Score=41.75 Aligned_cols=34 Identities=15% Similarity=0.293 Sum_probs=29.5
Q ss_pred CCeEEEEcCchHHHHHHHHHHHcCCCccEEEEcCC
Q psy2951 595 KDTFIVVGGGPSGATCVETLRQNGFTGKLYFITDE 629 (1466)
Q Consensus 595 ~~~vvVIGgG~AGl~aA~~l~~~g~~~~v~~~~~~ 629 (1466)
++||.|||+|.-|.++|+.|+..+.. ++.+++..
T Consensus 1 r~KI~IIGaG~VG~~~A~~l~~~~l~-dl~l~D~~ 34 (142)
T d1uxja1 1 RKKISIIGAGFVGSTTAHWLAAKELG-DIVLLDIV 34 (142)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCS-EEEEECSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCcc-eEEEEeec
Confidence 36999999999999999999998874 68888764
|