Psyllid ID: psy2961

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200--
Protein Sequence
MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFRQ
Secondary Structure (PSIPRED)
ccccccccccccEEEEEccccHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHccccEEEcHHHHHHHHHHccccccEEEEcccccHHHHHHHHHcccccEEEEEccccccccccccccHHccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHccccccccccEEccHHHHHHHHHHHHHcccccEEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccHHHHccccccEEEEccccHHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHccccEEEEHHHHHHHHHHccccccEEEEEcccHHHHHHHHHccccccEEEEccccccccEEEcHHHHHHcccEEEEccHHHHccccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccccEEEEEEEccc
Coil and Loop (DISEMBL)
mlkdynslspgdvviqngansacgQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSlgadyvftEEELRNisrdasipkpklalncvggnsaTNLLRTLVSKGVMvtyggmsrepvqiptsafifkdiTLRGHWMTRWQKENKESAERKSMMNELTEMMRTgklaapahkFVTLKNFQEALMNTMSIQGKSGVKYYIDFRQ
Flexible Loop (DISEMBL)
mlkdynslspGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRnisrdasipkpkLALNCVGGNSATNLLRTLVSKGVMVTYGGmsrepvqiptsaFIFKDITLRGHWMtrwqkenkesaeRKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTmsiqgksgvKYYIDFRQ
Low Complexity Region (SEG)
MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFRQ
Disordered region (IsUnstruct)
************VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRW**************************AAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYID***
Disordered Region (DISOPRED)
MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFRQ
Disordered Region (DISEMBL)
MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQK*********SMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFRQ
Disordered Region (DISPRO)
MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFRQ
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFRQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	202	2.2.26 [Sep-21-2011]
Q9V6U9	357	Probable trans-2-enoyl-Co	yes	N/A	0.985	0.557	0.527	1e-56
Q9Z311	373	Trans-2-enoyl-CoA reducta	yes	N/A	0.905	0.490	0.528	3e-50
Q9BV79	373	Trans-2-enoyl-CoA reducta	no	N/A	0.905	0.490	0.513	7e-49
Q9DCS3	373	Trans-2-enoyl-CoA reducta	yes	N/A	0.905	0.490	0.523	8e-49
Q6GQN8	377	Trans-2-enoyl-CoA reducta	yes	N/A	0.920	0.493	0.5	3e-48
Q28GQ2	350	Trans-2-enoyl-CoA reducta	yes	N/A	0.925	0.534	0.468	5e-46
Q7YS70	373	Trans-2-enoyl-CoA reducta	yes	N/A	0.896	0.485	0.475	1e-43
O45903	344	Probable trans-2-enoyl-Co	yes	N/A	0.806	0.473	0.533	4e-43
Q54YT4	350	Trans-2-enoyl-CoA reducta	yes	N/A	0.965	0.557	0.417	1e-38
Q8LCU7	375	Probable trans-2-enoyl-Co	yes	N/A	0.935	0.504	0.432	5e-38

>sp|Q9V6U9|MECR_DROME Probable trans-2-enoyl-CoA reductase, mitochondrial OS=Drosophila melanogaster GN=CG16935 PE=3 SV=2

 Score =  219 bits (557), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 106/201 (52%), Positives = 133/201 (66%), Gaps = 2/201 (0%)

Query: 1   MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
           MLKD+  L PGD VIQNGANSA GQ V Q+ R WG+ ++ IVR+R +I +LK  L+ LGA
Sbjct: 154 MLKDFVQLCPGDTVIQNGANSAVGQAVHQLCRAWGINSVGIVRDRPEIAELKQMLQCLGA 213

Query: 61  DYVFTEEELR--NISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQ 118
             V TE E+R  +I +   + KP+LA NCVGG SAT + R L + GV+VTYGGMSREPV 
Sbjct: 214 TEVLTEAEIRTSDIFKSGKLKKPRLAFNCVGGKSATEVSRHLDNGGVLVTYGGMSREPVT 273

Query: 119 IPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNF 178
           + T   IFKDI  RG WMTRW KEN  S ER  M  E+ E+M  GK  AP H+ V L  F
Sbjct: 274 VATGPLIFKDIAFRGFWMTRWSKENYSSPERSKMFKEIFELMEQGKFVAPNHEMVPLAKF 333

Query: 179 QEALMNTMSIQGKSGVKYYID 199
           ++A    +S +G +G KY +D
Sbjct: 334 KDAAAAALSFKGFTGKKYILD 354

Catalyzes the reduction of trans-2-enoyl-CoA to acyl-CoA. May have a role in the mitochondrial synthesis of fatty acids.
Drosophila melanogaster (taxid: 7227)
EC: 1EC: .EC: 3EC: .EC: 1EC: .EC: 3EC: 8

>sp|Q9Z311|MECR_RAT Trans-2-enoyl-CoA reductase, mitochondrial OS=Rattus norvegicus GN=Mecr PE=2 SV=1

 Score =  197 bits (502), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 101/191 (52%), Positives = 129/191 (67%), Gaps = 8/191 (4%)

Query: 1   MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
           ML D+  L PGD VIQN +NS  GQ VIQIA   GLKTIN++R+R DI KL   LK LGA
Sbjct: 174 MLVDFEQLQPGDSVIQNASNSGVGQAVIQIASALGLKTINVIRDRPDIKKLTDRLKDLGA 233

Query: 61  DYVFTEEELR-----NISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSRE 115
           DYV TEEELR     NI +D  +P P+LALNCVGG S+T LLR L   G MVTYGGM+++
Sbjct: 234 DYVLTEEELRMPETKNIFKD--LPLPRLALNCVGGKSSTELLRHLAPGGTMVTYGGMAKQ 291

Query: 116 PVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTL 175
           PV    S  IFKD+ LRG W+++W+K N    E K ++  L  ++R G+L APA   + L
Sbjct: 292 PVTASVSMLIFKDLKLRGFWLSQWKK-NHSPDEFKELILILCNLIRQGQLTAPAWSGIPL 350

Query: 176 KNFQEALMNTM 186
           +++Q+AL  +M
Sbjct: 351 QDYQQALEASM 361

Catalyzes the reduction of trans-2-enoyl-CoA to acyl-CoA with chain length from C6 to C16 in an NADPH-dependent manner with preference to medium chain length substrate. May have a role in the mitochondrial synthesis of fatty acids.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 8

>sp|Q9BV79|MECR_HUMAN Trans-2-enoyl-CoA reductase, mitochondrial OS=Homo sapiens GN=MECR PE=1 SV=2

 Score =  193 bits (490), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 98/191 (51%), Positives = 131/191 (68%), Gaps = 8/191 (4%)

Query: 1   MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
           ML D+  L PGD VIQN +NS  GQ VIQIA   GL+TIN+VR+R DI KL   LKSLGA
Sbjct: 174 MLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGA 233

Query: 61  DYVFTEEELR-----NISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSRE 115
           ++V TEEELR     N  +D  +P+P+LALNCVGG S+T LLR L   G MVTYGGM+++
Sbjct: 234 EHVITEEELRRPEMKNFFKD--MPQPRLALNCVGGKSSTELLRQLARGGTMVTYGGMAKQ 291

Query: 116 PVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTL 175
           PV    S  IFKD+ LRG W+++W+K++    + K ++  L +++R G+L APA   V L
Sbjct: 292 PVVASVSLLIFKDLKLRGFWLSQWKKDHSPD-QFKELILTLCDLIRRGQLTAPACSQVPL 350

Query: 176 KNFQEALMNTM 186
           +++Q AL  +M
Sbjct: 351 QDYQSALEASM 361

Catalyzes the reduction of trans-2-enoyl-CoA to acyl-CoA with chain length from C6 to C16 in an NADPH-dependent manner with preference to medium chain length substrate. May have a role in the mitochondrial synthesis of fatty acids.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 8

>sp|Q9DCS3|MECR_MOUSE Trans-2-enoyl-CoA reductase, mitochondrial OS=Mus musculus GN=Mecr PE=2 SV=2

 Score =  192 bits (489), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 100/191 (52%), Positives = 126/191 (65%), Gaps = 8/191 (4%)

Query: 1   MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
           ML D+  L PGD VIQN +NS  GQ VIQIA    LKTIN+VR+R DI KL   LK LGA
Sbjct: 174 MLVDFEQLQPGDSVIQNASNSGVGQAVIQIASALRLKTINVVRDRPDIKKLTDRLKDLGA 233

Query: 61  DYVFTEEELR-----NISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSRE 115
           DYV TEEELR      I +D  +P P+LALNCVGG S+T LLR L   G MVTYGGM+++
Sbjct: 234 DYVLTEEELRMPETKTIFKD--LPLPRLALNCVGGKSSTELLRHLAPGGTMVTYGGMAKQ 291

Query: 116 PVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTL 175
           PV    S  IFKD+ LRG W+++W+K N    E K ++  L  ++R G+L AP+   V L
Sbjct: 292 PVTASVSLLIFKDLKLRGFWLSQWKK-NHSPDEFKELILTLCNLIRQGRLTAPSCSEVPL 350

Query: 176 KNFQEALMNTM 186
           + +Q+AL  +M
Sbjct: 351 QGYQQALEASM 361

Catalyzes the reduction of trans-2-enoyl-CoA to acyl-CoA with chain length from C6 to C16 in an NADPH-dependent manner with preference to medium chain length substrate. May have a role in the mitochondrial synthesis of fatty acids.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 8

>sp|Q6GQN8|MECR_DANRE Trans-2-enoyl-CoA reductase, mitochondrial OS=Danio rerio GN=mecr PE=2 SV=2

 Score =  191 bits (484), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 95/190 (50%), Positives = 129/190 (67%), Gaps = 4/190 (2%)

Query: 1   MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
           ML D+  L  GD VIQN ANS  GQ VIQIA   G+ TIN++R+R D+ +L   L ++GA
Sbjct: 176 MLTDFEELKAGDTVIQNAANSGVGQAVIQIAAAKGIHTINVIRDRPDLRQLSDRLTAMGA 235

Query: 61  DYVFTEEELRNISRDA---SIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPV 117
            +V TEE LR         S P+PKLALN VGG SAT LLR L S G +VTYGGM+++PV
Sbjct: 236 THVITEETLRRPEMKELFKSCPRPKLALNGVGGKSATELLRHLQSGGSLVTYGGMAKQPV 295

Query: 118 QIPTSAFIFKDITLRGHWMTRWQKENKESAER-KSMMNELTEMMRTGKLAAPAHKFVTLK 176
            +P SA IFKD+ +RG W+T+W+++N+   E  + M++EL  ++R GKL+AP    V L+
Sbjct: 296 TVPVSALIFKDVRVRGFWVTQWKRDNRHDDEALRHMLDELCILIRAGKLSAPICTQVQLQ 355

Query: 177 NFQEALMNTM 186
           +F++AL N M
Sbjct: 356 DFRKALENAM 365

Catalyzes the reduction of trans-2-enoyl-CoA to acyl-CoA. May have a role in the mitochondrial synthesis of fatty acids.

Danio rerio (taxid: 7955)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 8

>sp|Q28GQ2|MECR_XENTR Trans-2-enoyl-CoA reductase, mitochondrial OS=Xenopus tropicalis GN=mecr PE=2 SV=1

 Score =  183 bits (465), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 90/192 (46%), Positives = 128/192 (66%), Gaps = 5/192 (2%)

Query: 1   MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
           +L D+ +L PGD +IQN +NS  GQ VIQIA   G+ TIN+VR+R+D+  L   L+ LGA
Sbjct: 148 LLSDFETLRPGDTIIQNASNSGVGQAVIQIATSLGITTINVVRDREDLSSLIQRLRDLGA 207

Query: 61  DYVFTEEELRNIS-RD--ASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPV 117
           D+V TEE+LR    +D   + P+P+LALNCVGG S T +LR L   G MVTYGGMS++PV
Sbjct: 208 DHVITEEQLRKPEMKDLFKNCPRPRLALNCVGGKSTTEMLRHLDYGGTMVTYGGMSKQPV 267

Query: 118 QIPTSAFIFKDITLRGHWMTRWQKENKES--AERKSMMNELTEMMRTGKLAAPAHKFVTL 175
            +P SA IFK++ L G W+T+W+KE  ++   E   M+ +L +++R GKL  P      L
Sbjct: 268 TVPVSALIFKNVKLCGFWVTQWKKERAQTDREEIVKMIRDLCDLIRRGKLVPPPSTQRPL 327

Query: 176 KNFQEALMNTMS 187
           ++F  AL ++ +
Sbjct: 328 EDFSRALQDSQT 339

Catalyzes the reduction of trans-2-enoyl-CoA to acyl-CoA. May have a role in the mitochondrial synthesis of fatty acids (By similarity). Functions in pronephros development, regulating late differentiation of all pronephric tubule segments.

Xenopus tropicalis (taxid: 8364)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 8

>sp|Q7YS70|MECR_BOVIN Trans-2-enoyl-CoA reductase, mitochondrial OS=Bos taurus GN=MECR PE=1 SV=1

 Score =  175 bits (444), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 88/185 (47%), Positives = 124/185 (67%), Gaps = 4/185 (2%)

Query: 1   MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
           ML D+  L P D +IQN +NS  GQ VIQIA   GL+TIN++R+  D+ KL   LK+LGA
Sbjct: 174 MLVDFERLRPRDSIIQNASNSGVGQAVIQIAAARGLRTINVLRDTPDLQKLTDTLKNLGA 233

Query: 61  DYVFTEEELRNISRDA---SIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPV 117
           ++V TEEELR     +    +P+P+LALNCVGG S+T LLR L   G MVTYGGM+++PV
Sbjct: 234 NHVVTEEELRKPEMKSFFKDVPQPRLALNCVGGKSSTELLRHLAPGGTMVTYGGMAKQPV 293

Query: 118 QIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKN 177
               S  IFKD+ LRG W+++W+K++    + K ++  L +++R G+L APA   V L++
Sbjct: 294 IASVSQLIFKDLKLRGFWLSQWKKDHSPD-QFKELILTLCDLIRRGQLTAPACSEVPLQD 352

Query: 178 FQEAL 182
           +  AL
Sbjct: 353 YLCAL 357

Catalyzes the reduction of trans-2-enoyl-CoA to acyl-CoA with chain length from C6 to C16 in an NADPH-dependent manner with preference to medium chain length substrate. May have a role in the mitochondrial synthesis of fatty acids.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 8

>sp|O45903|MECR1_CAEEL Probable trans-2-enoyl-CoA reductase 1, mitochondrial OS=Caenorhabditis elegans GN=W09H1.5 PE=3 SV=1

 Score =  174 bits (441), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 88/165 (53%), Positives = 110/165 (66%), Gaps = 2/165 (1%)

Query: 1   MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
           MLKD+  L  GD V QNGANSA G++VIQI R  G+KT+N+VR+RD++++L   LK LGA
Sbjct: 149 MLKDFIDLKKGDTVAQNGANSAVGKHVIQICRILGIKTVNVVRSRDNLEELVKELKDLGA 208

Query: 61  DYVFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIP 120
           D V T+EEL   SR    P  KLALNCVGG S+  L   L   G MVTYGGMS++PV  P
Sbjct: 209 DEVITQEEL--YSRKKKFPGVKLALNCVGGRSSLFLASLLDHGGCMVTYGGMSKQPVDCP 266

Query: 121 TSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKL 165
           T   IFKDI+LRG WM+RW    K   +R  M  EL   M++G++
Sbjct: 267 TGPLIFKDISLRGFWMSRWYDIQKSPEKRHEMYQELAGWMKSGEI 311

Catalyzes the reduction of trans-2-enoyl-CoA to acyl-CoA. May have a role in the mitochondrial synthesis of fatty acids.

Caenorhabditis elegans (taxid: 6239)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 8

>sp|Q54YT4|MECR_DICDI Trans-2-enoyl-CoA reductase, mitochondrial OS=Dictyostelium discoideum GN=mecr PE=3 SV=1

 Score =  159 bits (401), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 86/206 (41%), Positives = 127/206 (61%), Gaps = 11/206 (5%)

Query: 1   MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
           +L D+  L  GDV+IQN +NS  G +VIQ+A+  G+KTIN++R+  + +     LK LG 
Sbjct: 150 LLNDFVKLQQGDVIIQNASNSMVGLSVIQLAKARGIKTINVIRDGSEFEDNVQRLKQLGG 209

Query: 61  DYVFTEEELRNISRD---ASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPV 117
           D V +EE +R  +     + +P PKLALN VGG SAT L R L   G +VTYGGMSREPV
Sbjct: 210 DIVVSEEYVRTPAFRKLISDLPSPKLALNAVGGQSATELSRILADNGTLVTYGGMSREPV 269

Query: 118 QIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTG--KLAAPAHKFVTL 175
            IPTS  IF++I +RG W+ +W +++ +S E++S+ + + +++R    KL    HKF   
Sbjct: 270 TIPTSQLIFRNIQIRGFWLNKWFEQHTDS-EKQSVYDAIFDLIRKKQFKLLIEKHKF--- 325

Query: 176 KNFQEALMNTMSIQGKSGVKYYIDFR 201
             F +AL+ +   Q   G K  +D +
Sbjct: 326 SEFDQALLKSQ--QSGHGRKIVLDLQ 349

Catalyzes the reduction of trans-2-enoyl-CoA to acyl-CoA. May have a role in the mitochondrial synthesis of fatty acids.

Dictyostelium discoideum (taxid: 44689)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 8

>sp|Q8LCU7|MECR_ARATH Probable trans-2-enoyl-CoA reductase, mitochondrial OS=Arabidopsis thaliana GN=At3g45770 PE=1 SV=1

 Score =  157 bits (397), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 84/194 (43%), Positives = 124/194 (63%), Gaps = 5/194 (2%)

Query: 1   MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
           ML+D+ +L+ GD V+QNGA S  GQ VIQ+AR  G+ TIN++R+R   D+ +  LK+LGA
Sbjct: 176 MLEDFVNLNSGDSVVQNGATSIVGQCVIQLARLRGISTINLIRDRAGSDEAREQLKALGA 235

Query: 61  DYVFTEEEL--RNI-SRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPV 117
           D VF+E +L  +N+ S   ++P+P L  NCVGGN+A+ +L+ L   G MVTYGGMS++P+
Sbjct: 236 DEVFSESQLNVKNVKSLLGNLPEPALGFNCVGGNAASLVLKYLREGGTMVTYGGMSKKPI 295

Query: 118 QIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKN 177
            + T++FIFKD+ LRG W+  W    K   E + M++ L  + R GKL     + V  + 
Sbjct: 296 TVSTTSFIFKDLALRGFWLQSWLSMGK-VKECREMIDYLLGLARDGKLKY-ETELVPFEE 353

Query: 178 FQEALMNTMSIQGK 191
           F  AL   +   G+
Sbjct: 354 FPVALDKALGKLGR 367

Catalyzes the reduction of trans-2-enoyl-CoA to acyl-CoA. May have a role in the mitochondrial synthesis of fatty acids.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
91089675	360	PREDICTED: similar to zinc binding dehyd	0.995	0.558	0.576	7e-65
193629721	367	PREDICTED: probable trans-2-enoyl-CoA re	0.995	0.547	0.565	2e-61
389612198	364	zinc binding dehydrogenase [Papilio xuth	0.985	0.546	0.579	4e-61
383865671	370	PREDICTED: probable trans-2-enoyl-CoA re	0.990	0.540	0.529	3e-59
332374884	365	unknown [Dendroctonus ponderosae]	0.990	0.547	0.529	4e-59
157104018	353	zinc binding dehydrogenase [Aedes aegypt	0.990	0.566	0.539	5e-59
312381828	364	hypothetical protein AND_05789 [Anophele	0.990	0.549	0.544	5e-59
195123621	340	GI20971 [Drosophila mojavensis] gi|19391	1.0	0.594	0.539	6e-59
340709598	370	PREDICTED: probable trans-2-enoyl-CoA re	1.0	0.545	0.509	4e-58
350401046	370	PREDICTED: probable trans-2-enoyl-CoA re	1.0	0.545	0.509	5e-58

>gi|91089675|ref|XP_974428.1| PREDICTED: similar to zinc binding dehydrogenase [Tribolium castaneum] gi|270012629|gb|EFA09077.1| hypothetical protein TcasGA2_TC006794 [Tribolium castaneum]

 Score =  252 bits (643), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 117/203 (57%), Positives = 151/203 (74%), Gaps = 2/203 (0%)

Query: 1   MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
           ML+D+  L PGD VIQNGANSACGQNVIQI R WGL+++NIVR+R  ID+L+ +L++LGA
Sbjct: 158 MLRDFVDLKPGDTVIQNGANSACGQNVIQICRAWGLRSVNIVRDRAGIDELRCFLQNLGA 217

Query: 61  DYVFTEEELR--NISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQ 118
           ++V TEEELR   I +   + KPKLALNCVGG +A  ++R L   G MVTYGGMSREPV 
Sbjct: 218 NHVLTEEELRKTEIFKSGKLEKPKLALNCVGGQNALEVMRHLDKGGTMVTYGGMSREPVT 277

Query: 119 IPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNF 178
           +PTSA IFKD+ +RG WMT W K+N +S +R  M  EL  MM T +L  PA K V+ + +
Sbjct: 278 VPTSALIFKDLRIRGFWMTDWTKQNADSVDRFEMFEELISMMTTNELQGPAFKMVSFEQY 337

Query: 179 QEALMNTMSIQGKSGVKYYIDFR 201
           +EALMNTM+I+G  G KY ++F+
Sbjct: 338 KEALMNTMTIKGMIGKKYILEFK 360

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193629721|ref|XP_001949333.1| PREDICTED: probable trans-2-enoyl-CoA reductase, mitochondrial-like [Acyrthosiphon pisum]

 Score =  240 bits (613), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 116/205 (56%), Positives = 154/205 (75%), Gaps = 4/205 (1%)

Query: 1   MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD--DIDKLKSYLKSL 58
           ML D+ SL+  DV+IQNGANSACGQN+IQ+A  +G  T+NI+RNR   D++ LK+ LK L
Sbjct: 163 MLHDFVSLNKNDVIIQNGANSACGQNIIQLANIFGYTTVNIIRNRPEPDLENLKNLLKCL 222

Query: 59  GADYVFTEEELR--NISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREP 116
           GA YV TEEELR  ++ R   +PKP+L +N +GG S+T +LRTL + GVMVTYGGMSREP
Sbjct: 223 GASYVLTEEELRTTDLFRSGVLPKPRLGINNIGGKSSTEVLRTLNNGGVMVTYGGMSREP 282

Query: 117 VQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLK 176
           V +PT++FIFKDI LRG WMTRW+KEN  + +   M +EL + M+ GKL APA+K + L 
Sbjct: 283 VIVPTASFIFKDIQLRGFWMTRWRKENANTEQYNQMYDELLQFMKDGKLVAPAYKTLPLN 342

Query: 177 NFQEALMNTMSIQGKSGVKYYIDFR 201
           +F+EAL NT+S +G  G KY++D +
Sbjct: 343 SFKEALKNTISSKGFIGHKYFLDLQ 367

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389612198|dbj|BAM19614.1| zinc binding dehydrogenase [Papilio xuthus]

 Score =  239 bits (610), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 117/202 (57%), Positives = 141/202 (69%), Gaps = 3/202 (1%)

Query: 1   MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
           ML D+  +  G VVIQNGANSACGQNVIQI + WG+K INIVRNR +ID LK+YLK LGA
Sbjct: 163 MLTDFQPVKDGLVVIQNGANSACGQNVIQICKAWGVKNINIVRNRPEIDDLKNYLKCLGA 222

Query: 61  DYVFTEEELR--NISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQ 118
            YV TEEELR  NI +D  I KP LALNCVGG S+  +LR L   G MVTYGGMSREPV 
Sbjct: 223 TYVLTEEELRSTNIFKDKLIEKPSLALNCVGGKSSLEMLRHLQPSGKMVTYGGMSREPVS 282

Query: 119 IPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNF 178
           IPTSA IFK+++  G WMT W  E     E+ +MMN++  MM    +  P HK V ++ +
Sbjct: 283 IPTSALIFKNLSFYGFWMTAWN-EKATPVEKNNMMNDIISMMTCDNIKGPIHKMVKIEEY 341

Query: 179 QEALMNTMSIQGKSGVKYYIDF 200
           QEA+ N +S QG +G KY +DF
Sbjct: 342 QEAIGNALSPQGFTGCKYILDF 363

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383865671|ref|XP_003708296.1| PREDICTED: probable trans-2-enoyl-CoA reductase, mitochondrial-like [Megachile rotundata]

 Score =  233 bits (595), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 107/202 (52%), Positives = 145/202 (71%), Gaps = 2/202 (0%)

Query: 1   MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
           MLKD+ +L PGD VIQNG NSA GQ VIQ+ + W  K++N+VR+R +I +LK+YL +LGA
Sbjct: 166 MLKDFVALGPGDTVIQNGGNSAVGQMVIQLCKAWNFKSVNVVRDRPNITELKNYLINLGA 225

Query: 61  DYVFTEEELR--NISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQ 118
           D VFTE+E+R   I ++  +P PKLALNC+ G +A  ++R L   G+MVTYGGMSREP+ 
Sbjct: 226 DEVFTEDEIRKTQIFKNKKLPPPKLALNCICGQNALEIMRHLSHGGIMVTYGGMSREPIT 285

Query: 119 IPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNF 178
           +PTSA IFKDITL+G WMT W K N  S ER++M  +L  + R  K+ AP HK V    +
Sbjct: 286 VPTSALIFKDITLKGFWMTAWTKANMNSKERENMFTQLGILFRDKKMKAPPHKLVPFCQY 345

Query: 179 QEALMNTMSIQGKSGVKYYIDF 200
           QEA++N +++ G+ GVKY +D 
Sbjct: 346 QEAVINALNMNGRIGVKYILDM 367

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332374884|gb|AEE62583.1| unknown [Dendroctonus ponderosae]

 Score =  233 bits (594), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 107/202 (52%), Positives = 145/202 (71%), Gaps = 2/202 (0%)

Query: 1   MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
           ML+D+  L PGD VIQNG+NSACGQ +IQI R WG++TINI+R+R ++  LK+YL +LGA
Sbjct: 163 MLRDFTELKPGDSVIQNGSNSACGQYIIQICRSWGIRTINIIRDRPNVSDLKAYLTNLGA 222

Query: 61  DYVFTEEELR--NISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQ 118
            +V TEEELR  +I +   I KPKLALNCVGG +A    R L +   MVTYGGMSREP+ 
Sbjct: 223 THVLTEEELRTTDIFKSGQINKPKLALNCVGGKNALECSRHLQNGSPMVTYGGMSREPLS 282

Query: 119 IPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNF 178
           +PT+A IFKD+  RG WMTRW ++N  S +R  M +EL  MM + +L  P+++ V   N+
Sbjct: 283 VPTAALIFKDLQFRGFWMTRWSEKNATSIDRFEMYSELISMMTSNELHGPSYELVDFHNY 342

Query: 179 QEALMNTMSIQGKSGVKYYIDF 200
           +EAL+NT++++G  G KY + F
Sbjct: 343 KEALINTLTVKGMIGKKYLLKF 364

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157104018|ref|XP_001648220.1| zinc binding dehydrogenase [Aedes aegypti] gi|108880436|gb|EAT44661.1| AAEL003995-PA [Aedes aegypti]

 Score =  233 bits (593), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 109/202 (53%), Positives = 140/202 (69%), Gaps = 2/202 (0%)

Query: 1   MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
           MLKD+ SL  GD VIQNGANSACGQ VIQ+ R WG+  + IVR+R +  KL+ YLK LGA
Sbjct: 152 MLKDFVSLKAGDTVIQNGANSACGQAVIQLCRAWGVDCVGIVRDRPEFSKLRDYLKDLGA 211

Query: 61  DYVFTEEELRN--ISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQ 118
             + TEEELR   I +D    KPKLALNCVGG +A  + R L ++G+MVTYGGMSREPV 
Sbjct: 212 AEILTEEELRTTKIFKDGLFKKPKLALNCVGGKNALEVSRHLDNQGIMVTYGGMSREPVT 271

Query: 119 IPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNF 178
           +PT++ IFKD+   G WMTRW KEN ++ +R  M +EL E++  G L APAH+ +   ++
Sbjct: 272 VPTASLIFKDLQFSGFWMTRWTKENAQNPKRAEMFSELFELIGKGVLKAPAHELIAFTDY 331

Query: 179 QEALMNTMSIQGKSGVKYYIDF 200
           + A+ N +SIQG  G KY   F
Sbjct: 332 KTAVTNALSIQGFVGKKYIFTF 353

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312381828|gb|EFR27478.1| hypothetical protein AND_05789 [Anopheles darlingi]

 Score =  232 bits (592), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 110/202 (54%), Positives = 136/202 (67%), Gaps = 2/202 (0%)

Query: 1   MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
           MLKD+ SL PGD VIQNGANSACGQ +IQ+ R W ++ + +VR+R D  +LK YLKSLGA
Sbjct: 163 MLKDFVSLKPGDTVIQNGANSACGQAIIQLCRAWNIECVGVVRDRPDFGQLKDYLKSLGA 222

Query: 61  DYVFTEEELRN--ISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQ 118
             + TEEELR   + RD    KPKLALNCVGG +A  + R L   GVMVTYGGMSREPV 
Sbjct: 223 AEILTEEELRTTKLFRDGIFRKPKLALNCVGGKNALEMSRQLDQAGVMVTYGGMSREPVT 282

Query: 119 IPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNF 178
           +PT++ IFKD+   G WMTRW KEN  S  R  M NEL  ++  G L APAH+ +    +
Sbjct: 283 VPTASLIFKDLRFVGFWMTRWTKENAASPARAEMFNELFGLIDRGALKAPAHEMIAFDQY 342

Query: 179 QEALMNTMSIQGKSGVKYYIDF 200
             A+ N ++IQG  G KY  +F
Sbjct: 343 ISAVTNALNIQGFVGKKYIFNF 364

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195123621|ref|XP_002006302.1| GI20971 [Drosophila mojavensis] gi|193911370|gb|EDW10237.1| GI20971 [Drosophila mojavensis]

 Score =  232 bits (592), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 110/204 (53%), Positives = 141/204 (69%), Gaps = 2/204 (0%)

Query: 1   MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
           MLKD+  LSPGD VIQNGANSA GQ V Q+ R WG+ ++ IVRNR +ID+LK  L+SLGA
Sbjct: 136 MLKDFVKLSPGDTVIQNGANSAVGQAVHQLCRAWGINSVGIVRNRPEIDELKKLLQSLGA 195

Query: 61  DYVFTEEELR--NISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQ 118
             V TE+E+R  +I +   I +P+LALNCVGG SAT + R L  +GVMVTYGGMSREPV 
Sbjct: 196 TAVLTEDEIRTSDIFKSGKIKRPQLALNCVGGKSATEVSRHLNDRGVMVTYGGMSREPVT 255

Query: 119 IPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNF 178
           + T   IFKDI  RG WMTRW KEN  + ERK M  EL ++M  GK  AP H+ V L+ F
Sbjct: 256 VATGPLIFKDIAFRGFWMTRWSKENYNAPERKQMFQELCKLMEEGKFVAPTHEMVPLEKF 315

Query: 179 QEALMNTMSIQGKSGVKYYIDFRQ 202
           ++A    ++ +G +G K+ +D  +
Sbjct: 316 KDAAAAALNFKGFTGKKFILDMSK 339

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340709598|ref|XP_003393392.1| PREDICTED: probable trans-2-enoyl-CoA reductase, mitochondrial-like [Bombus terrestris]

 Score =  229 bits (585), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 104/204 (50%), Positives = 143/204 (70%), Gaps = 2/204 (0%)

Query: 1   MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
           MLKD+  L PGD VIQNG NSA GQ +IQ+ + W  K+++++R+R +I++LK+YL SLGA
Sbjct: 166 MLKDFVELKPGDTVIQNGGNSAVGQMIIQLCKIWNYKSVSVIRDRPNIEELKNYLTSLGA 225

Query: 61  DYVFTEEELR--NISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQ 118
           D + TE+E+R   I +   +P PKLALNC+ G +A  +LR L   G+MVTYGGMSREP+ 
Sbjct: 226 DEILTEDEIRKTQIFKSKKLPSPKLALNCICGQNALEVLRHLAHGGIMVTYGGMSREPLT 285

Query: 119 IPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNF 178
           +PTSA IFKDITL+G WMT W K N  S ER+ M +EL  + +  +L AP HK V    +
Sbjct: 286 VPTSALIFKDITLKGFWMTAWTKVNMNSKEREKMFSELGALFKDKRLKAPPHKLVPFCQY 345

Query: 179 QEALMNTMSIQGKSGVKYYIDFRQ 202
           QEA++N +   G++GVKY +D  +
Sbjct: 346 QEAVINALHTDGRTGVKYILDMTK 369

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350401046|ref|XP_003486037.1| PREDICTED: probable trans-2-enoyl-CoA reductase, mitochondrial-like [Bombus impatiens]

 Score =  229 bits (584), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 104/204 (50%), Positives = 143/204 (70%), Gaps = 2/204 (0%)

Query: 1   MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
           MLKD+  L PGD VIQNG NSA GQ +IQ+ + W  K+++++R+R +I++LK+YL SLGA
Sbjct: 166 MLKDFVKLKPGDTVIQNGGNSAVGQMIIQLCKIWNYKSVSVIRDRPNIEELKNYLTSLGA 225

Query: 61  DYVFTEEELR--NISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQ 118
           D + TE+E+R   I +   +P PKLALNC+ G +A  +LR L   G+MVTYGGMSREP+ 
Sbjct: 226 DEILTEDEIRKTQIFKTKKLPSPKLALNCICGQNALEVLRHLAHGGIMVTYGGMSREPLT 285

Query: 119 IPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNF 178
           +PTSA IFKDITL+G WMT W K N  S ER+ M +EL  + +  +L AP HK V    +
Sbjct: 286 VPTSALIFKDITLKGFWMTAWTKVNMNSKEREKMFSELGALFKDKRLKAPPHKLVPFCQY 345

Query: 179 QEALMNTMSIQGKSGVKYYIDFRQ 202
           QEA++N +   G++GVKY +D  +
Sbjct: 346 QEAVINALHTDGRTGVKYILDMTK 369

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
FB|FBgn0033883	357	CG16935 [Drosophila melanogast	0.985	0.557	0.527	1.9e-51
RGD|3208	373	Mecr "mitochondrial trans-2-en	0.905	0.490	0.528	4.4e-45
UNIPROTKB|Q9Z311	373	Mecr "Trans-2-enoyl-CoA reduct	0.905	0.490	0.528	4.4e-45
UNIPROTKB|Q9BV79	373	MECR "Trans-2-enoyl-CoA reduct	0.905	0.490	0.513	2.4e-44
MGI|MGI:1349441	373	Mecr "mitochondrial trans-2-en	0.905	0.490	0.523	1.3e-43
ZFIN|ZDB-GENE-050417-399	377	mecr "mitochondrial trans-2-en	0.920	0.493	0.5	1.7e-43
UNIPROTKB|E2R1T2	367	MECR "Uncharacterized protein"	0.905	0.498	0.497	3.2e-42
UNIPROTKB|Q28GQ2	350	mecr "Trans-2-enoyl-CoA reduct	0.925	0.534	0.463	3.2e-42
WB|WBGene00012375	344	mecr-1 [Caenorhabditis elegans	0.806	0.473	0.533	4.2e-40
UNIPROTKB|Q7YS70	373	MECR "Trans-2-enoyl-CoA reduct	0.896	0.485	0.475	1.1e-39

FB|FBgn0033883 CG16935 [Drosophila melanogaster (taxid:7227)]

 Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
 Identities = 106/201 (52%), Positives = 133/201 (66%)

Query:     1 MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
             MLKD+  L PGD VIQNGANSA GQ V Q+ R WG+ ++ IVR+R +I +LK  L+ LGA
Sbjct:   154 MLKDFVQLCPGDTVIQNGANSAVGQAVHQLCRAWGINSVGIVRDRPEIAELKQMLQCLGA 213

Query:    61 DYVFTEEELR--NISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQ 118
               V TE E+R  +I +   + KP+LA NCVGG SAT + R L + GV+VTYGGMSREPV 
Sbjct:   214 TEVLTEAEIRTSDIFKSGKLKKPRLAFNCVGGKSATEVSRHLDNGGVLVTYGGMSREPVT 273

Query:   119 IPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNF 178
             + T   IFKDI  RG WMTRW KEN  S ER  M  E+ E+M  GK  AP H+ V L  F
Sbjct:   274 VATGPLIFKDIAFRGFWMTRWSKENYSSPERSKMFKEIFELMEQGKFVAPNHEMVPLAKF 333

Query:   179 QEALMNTMSIQGKSGVKYYID 199
             ++A    +S +G +G KY +D
Sbjct:   334 KDAAAAALSFKGFTGKKYILD 354

GO:0008270 "zinc ion binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=ISS

GO:0019166 "trans-2-enoyl-CoA reductase (NADPH) activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0005875 "microtubule associated complex" evidence=IDA

RGD|3208 Mecr "mitochondrial trans-2-enoyl-CoA reductase" [Rattus norvegicus (taxid:10116)]

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 101/191 (52%), Positives = 129/191 (67%)

Query:     1 MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
             ML D+  L PGD VIQN +NS  GQ VIQIA   GLKTIN++R+R DI KL   LK LGA
Sbjct:   174 MLVDFEQLQPGDSVIQNASNSGVGQAVIQIASALGLKTINVIRDRPDIKKLTDRLKDLGA 233

Query:    61 DYVFTEEELR-----NISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSRE 115
             DYV TEEELR     NI +D  +P P+LALNCVGG S+T LLR L   G MVTYGGM+++
Sbjct:   234 DYVLTEEELRMPETKNIFKD--LPLPRLALNCVGGKSSTELLRHLAPGGTMVTYGGMAKQ 291

Query:   116 PVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTL 175
             PV    S  IFKD+ LRG W+++W+K N    E K ++  L  ++R G+L APA   + L
Sbjct:   292 PVTASVSMLIFKDLKLRGFWLSQWKK-NHSPDEFKELILILCNLIRQGQLTAPAWSGIPL 350

Query:   176 KNFQEALMNTM 186
             +++Q+AL  +M
Sbjct:   351 QDYQQALEASM 361

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005102 "receptor binding" evidence=IDA

GO:0005739 "mitochondrion" evidence=IEA;ISO;IDA

GO:0006631 "fatty acid metabolic process" evidence=IEA;ISO;ISS

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0019166 "trans-2-enoyl-CoA reductase (NADPH) activity" evidence=IEA;ISO;ISS

UNIPROTKB|Q9Z311 Mecr "Trans-2-enoyl-CoA reductase, mitochondrial" [Rattus norvegicus (taxid:10116)]

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 101/191 (52%), Positives = 129/191 (67%)

Query:     1 MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
             ML D+  L PGD VIQN +NS  GQ VIQIA   GLKTIN++R+R DI KL   LK LGA
Sbjct:   174 MLVDFEQLQPGDSVIQNASNSGVGQAVIQIASALGLKTINVIRDRPDIKKLTDRLKDLGA 233

Query:    61 DYVFTEEELR-----NISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSRE 115
             DYV TEEELR     NI +D  +P P+LALNCVGG S+T LLR L   G MVTYGGM+++
Sbjct:   234 DYVLTEEELRMPETKNIFKD--LPLPRLALNCVGGKSSTELLRHLAPGGTMVTYGGMAKQ 291

Query:   116 PVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTL 175
             PV    S  IFKD+ LRG W+++W+K N    E K ++  L  ++R G+L APA   + L
Sbjct:   292 PVTASVSMLIFKDLKLRGFWLSQWKK-NHSPDEFKELILILCNLIRQGQLTAPAWSGIPL 350

Query:   176 KNFQEALMNTM 186
             +++Q+AL  +M
Sbjct:   351 QDYQQALEASM 361

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q9BV79 MECR "Trans-2-enoyl-CoA reductase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 98/191 (51%), Positives = 131/191 (68%)

Query:     1 MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
             ML D+  L PGD VIQN +NS  GQ VIQIA   GL+TIN+VR+R DI KL   LKSLGA
Sbjct:   174 MLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGA 233

Query:    61 DYVFTEEELR-----NISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSRE 115
             ++V TEEELR     N  +D  +P+P+LALNCVGG S+T LLR L   G MVTYGGM+++
Sbjct:   234 EHVITEEELRRPEMKNFFKD--MPQPRLALNCVGGKSSTELLRQLARGGTMVTYGGMAKQ 291

Query:   116 PVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTL 175
             PV    S  IFKD+ LRG W+++W+K++    + K ++  L +++R G+L APA   V L
Sbjct:   292 PVVASVSLLIFKDLKLRGFWLSQWKKDHSPD-QFKELILTLCDLIRRGQLTAPACSQVPL 350

Query:   176 KNFQEALMNTM 186
             +++Q AL  +M
Sbjct:   351 QDYQSALEASM 361

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0019166 "trans-2-enoyl-CoA reductase (NADPH) activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

MGI|MGI:1349441 Mecr "mitochondrial trans-2-enoyl-CoA reductase" [Mus musculus (taxid:10090)]

 Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
 Identities = 100/191 (52%), Positives = 126/191 (65%)

Query:     1 MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
             ML D+  L PGD VIQN +NS  GQ VIQIA    LKTIN+VR+R DI KL   LK LGA
Sbjct:   174 MLVDFEQLQPGDSVIQNASNSGVGQAVIQIASALRLKTINVVRDRPDIKKLTDRLKDLGA 233

Query:    61 DYVFTEEELR-----NISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSRE 115
             DYV TEEELR      I +D  +P P+LALNCVGG S+T LLR L   G MVTYGGM+++
Sbjct:   234 DYVLTEEELRMPETKTIFKD--LPLPRLALNCVGGKSSTELLRHLAPGGTMVTYGGMAKQ 291

Query:   116 PVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTL 175
             PV    S  IFKD+ LRG W+++W+K N    E K ++  L  ++R G+L AP+   V L
Sbjct:   292 PVTASVSLLIFKDLKLRGFWLSQWKK-NHSPDEFKELILTLCNLIRQGRLTAPSCSEVPL 350

Query:   176 KNFQEALMNTM 186
             + +Q+AL  +M
Sbjct:   351 QGYQQALEASM 361

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005102 "receptor binding" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005829 "cytosol" evidence=ISO

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=ISO

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016922 "ligand-dependent nuclear receptor binding" evidence=ISO

GO:0019166 "trans-2-enoyl-CoA reductase (NADPH) activity" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

ZFIN|ZDB-GENE-050417-399 mecr "mitochondrial trans-2-enoyl-CoA reductase" [Danio rerio (taxid:7955)]

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 95/190 (50%), Positives = 129/190 (67%)

Query:     1 MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
             ML D+  L  GD VIQN ANS  GQ VIQIA   G+ TIN++R+R D+ +L   L ++GA
Sbjct:   176 MLTDFEELKAGDTVIQNAANSGVGQAVIQIAAAKGIHTINVIRDRPDLRQLSDRLTAMGA 235

Query:    61 DYVFTEEELRNISRDA---SIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPV 117
              +V TEE LR         S P+PKLALN VGG SAT LLR L S G +VTYGGM+++PV
Sbjct:   236 THVITEETLRRPEMKELFKSCPRPKLALNGVGGKSATELLRHLQSGGSLVTYGGMAKQPV 295

Query:   118 QIPTSAFIFKDITLRGHWMTRWQKENKESAER-KSMMNELTEMMRTGKLAAPAHKFVTLK 176
              +P SA IFKD+ +RG W+T+W+++N+   E  + M++EL  ++R GKL+AP    V L+
Sbjct:   296 TVPVSALIFKDVRVRGFWVTQWKRDNRHDDEALRHMLDELCILIRAGKLSAPICTQVQLQ 355

Query:   177 NFQEALMNTM 186
             +F++AL N M
Sbjct:   356 DFRKALENAM 365

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0019166 "trans-2-enoyl-CoA reductase (NADPH) activity" evidence=IEA

GO:0039020 "pronephric nephron tubule development" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

UNIPROTKB|E2R1T2 MECR "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 95/191 (49%), Positives = 130/191 (68%)

Query:     1 MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
             ML D+  L PGD VIQN +NS  GQ VIQIA   GL+TIN+VR+R D+ +L   LKSLGA
Sbjct:   167 MLMDFEQLQPGDWVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDLQELTDRLKSLGA 226

Query:    61 DYVFTEEELR-----NISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSRE 115
             ++V TEEELR     N  +D  +P+P+LALNCVGG S+T LLR L   G MVTYGGM+++
Sbjct:   227 EHVLTEEELRKHEMKNFFKD--MPQPRLALNCVGGKSSTELLRHLAPGGTMVTYGGMAKQ 284

Query:   116 PVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTL 175
             PV    S  IFKD+ LRG W+++W+K++   A+ K ++  L  ++  G+L APA   V L
Sbjct:   285 PVIASVSQLIFKDLKLRGFWLSQWKKDHSP-AQFKELILTLCGLIGRGQLTAPACSEVPL 343

Query:   176 KNFQEALMNTM 186
             ++++ AL  +M
Sbjct:   344 QDYERALEASM 354

GO:0019166 "trans-2-enoyl-CoA reductase (NADPH) activity" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q28GQ2 mecr "Trans-2-enoyl-CoA reductase, mitochondrial" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 89/192 (46%), Positives = 128/192 (66%)

Query:     1 MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
             +L D+ +L PGD +IQN +NS  GQ VIQIA   G+ TIN+VR+R+D+  L   L+ LGA
Sbjct:   148 LLSDFETLRPGDTIIQNASNSGVGQAVIQIATSLGITTINVVRDREDLSSLIQRLRDLGA 207

Query:    61 DYVFTEEELRNIS-RDA--SIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPV 117
             D+V TEE+LR    +D   + P+P+LALNCVGG S T +LR L   G MVTYGGMS++PV
Sbjct:   208 DHVITEEQLRKPEMKDLFKNCPRPRLALNCVGGKSTTEMLRHLDYGGTMVTYGGMSKQPV 267

Query:   118 QIPTSAFIFKDITLRGHWMTRWQKENKESAERK--SMMNELTEMMRTGKLAAPAHKFVTL 175
              +P SA IFK++ L G W+T+W+KE  ++   +   M+ +L +++R GKL  P      L
Sbjct:   268 TVPVSALIFKNVKLCGFWVTQWKKERAQTDREEIVKMIRDLCDLIRRGKLVPPPSTQRPL 327

Query:   176 KNFQEALMNTMS 187
             ++F  AL ++ +
Sbjct:   328 EDFSRALQDSQT 339

GO:0039020 "pronephric nephron tubule development" evidence=IMP

WB|WBGene00012375 mecr-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 88/165 (53%), Positives = 110/165 (66%)

Query:     1 MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
             MLKD+  L  GD V QNGANSA G++VIQI R  G+KT+N+VR+RD++++L   LK LGA
Sbjct:   149 MLKDFIDLKKGDTVAQNGANSAVGKHVIQICRILGIKTVNVVRSRDNLEELVKELKDLGA 208

Query:    61 DYVFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIP 120
             D V T+EEL   SR    P  KLALNCVGG S+  L   L   G MVTYGGMS++PV  P
Sbjct:   209 DEVITQEEL--YSRKKKFPGVKLALNCVGGRSSLFLASLLDHGGCMVTYGGMSKQPVDCP 266

Query:   121 TSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKL 165
             T   IFKDI+LRG WM+RW    K   +R  M  EL   M++G++
Sbjct:   267 TGPLIFKDISLRGFWMSRWYDIQKSPEKRHEMYQELAGWMKSGEI 311

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016747 "transferase activity, transferring acyl groups other than amino-acyl groups" evidence=IEA

GO:0008340 "determination of adult lifespan" evidence=IMP

UNIPROTKB|Q7YS70 MECR "Trans-2-enoyl-CoA reductase, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 88/185 (47%), Positives = 124/185 (67%)

Query:     1 MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
             ML D+  L P D +IQN +NS  GQ VIQIA   GL+TIN++R+  D+ KL   LK+LGA
Sbjct:   174 MLVDFERLRPRDSIIQNASNSGVGQAVIQIAAARGLRTINVLRDTPDLQKLTDTLKNLGA 233

Query:    61 DYVFTEEELRNISRDA---SIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPV 117
             ++V TEEELR     +    +P+P+LALNCVGG S+T LLR L   G MVTYGGM+++PV
Sbjct:   234 NHVVTEEELRKPEMKSFFKDVPQPRLALNCVGGKSSTELLRHLAPGGTMVTYGGMAKQPV 293

Query:   118 QIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKN 177
                 S  IFKD+ LRG W+++W+K++    + K ++  L +++R G+L APA   V L++
Sbjct:   294 IASVSQLIFKDLKLRGFWLSQWKKDHSPD-QFKELILTLCDLIRRGQLTAPACSEVPLQD 352

Query:   178 FQEAL 182
             +  AL
Sbjct:   353 YLCAL 357

GO:0019166 "trans-2-enoyl-CoA reductase (NADPH) activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=IDA

GO:0005739 "mitochondrion" evidence=ISS

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9Z311	MECR_RAT	1, ., 3, ., 1, ., 3, 8	0.5287	0.9059	0.4906	yes	N/A
O45903	MECR1_CAEEL	1, ., 3, ., 1, ., 3, 8	0.5333	0.8069	0.4738	yes	N/A
Q9V6U9	MECR_DROME	1, ., 3, ., 1, ., 3, 8	0.5273	0.9851	0.5574	yes	N/A
Q9DCS3	MECR_MOUSE	1, ., 3, ., 1, ., 3, 8	0.5235	0.9059	0.4906	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	202
cd08290	341	cd08290, ETR, 2-enoyl thioester reductase (ETR)	5e-94
cd05282	323	cd05282, ETR_like, 2-enoyl thioester reductase-lik	9e-56
cd08292	324	cd08292, ETR_like_2, 2-enoyl thioester reductase (	2e-32
COG0604	326	COG0604, Qor, NADPH:quinone reductase and related	1e-25
cd08268	328	cd08268, MDR2, Medium chain dehydrogenases/reducta	6e-18
cd05188	271	cd05188, MDR, Medium chain reductase/dehydrogenase	2e-17
cd08291	324	cd08291, ETR_like_1, 2-enoyl thioester reductase (	5e-17
cd08241	323	cd08241, QOR1, Quinone oxidoreductase (QOR)	9e-15
cd08249	339	cd08249, enoyl_reductase_like, enoyl_reductase_lik	2e-13
cd05289	309	cd05289, MDR_like_2, alcohol dehydrogenase and qui	2e-12
pfam00107	131	pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase	4e-12
cd08266	342	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of t	5e-12
COG1064	339	COG1064, AdhP, Zn-dependent alcohol dehydrogenases	6e-12
cd08267	319	cd08267, MDR1, Medium chain dehydrogenases/reducta	1e-11
cd08264	325	cd08264, Zn_ADH_like2, Alcohol dehydrogenases of t	9e-11
cd08259	332	cd08259, Zn_ADH5, Alcohol dehydrogenases of the MD	2e-10
cd08294	329	cd08294, leukotriene_B4_DH_like, 13-PGR is a bifun	5e-10
PRK13771	334	PRK13771, PRK13771, putative alcohol dehydrogenase	1e-09
COG1063	350	COG1063, Tdh, Threonine dehydrogenase and related	4e-09
cd08254	338	cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-e	1e-08
cd05288	329	cd05288, PGDH, Prostaglandin dehydrogenases	2e-08
cd08253	325	cd08253, zeta_crystallin, Zeta-crystallin with NAD	7e-08
TIGR02825	325	TIGR02825, B4_12hDH, leukotriene B4 12-hydroxydehy	7e-08
pfam13602	129	pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenas	5e-07
cd08271	325	cd08271, MDR5, Medium chain dehydrogenases/reducta	3e-06
cd05276	323	cd05276, p53_inducible_oxidoreductase, PIG3 p53-in	7e-06
cd08274	350	cd08274, MDR9, Medium chain dehydrogenases/reducta	2e-05
cd05285	343	cd05285, sorbitol_DH, Sorbitol dehydrogenase	2e-05
cd08297	341	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CA	2e-05
cd08261	337	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MD	1e-04
cd05280	325	cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putativ	1e-04
cd08289	326	cd08289, MDR_yhfp_like, Yhfp putative quinone oxid	2e-04
cd05286	320	cd05286, QOR2, Quinone oxidoreductase (QOR)	3e-04
PTZ00354	334	PTZ00354, PTZ00354, alcohol dehydrogenase; Provisi	4e-04
cd08244	324	cd08244, MDR_enoyl_red, Possible enoyl reductase	5e-04
COG2130	340	COG2130, COG2130, Putative NADP-dependent oxidored	0.001
cd08270	305	cd08270, MDR4, Medium chain dehydrogenases/reducta	0.002
cd08263	367	cd08263, Zn_ADH10, Alcohol dehydrogenases of the M	0.002
cd08273	331	cd08273, MDR8, Medium chain dehydrogenases/reducta	0.002
cd08240	350	cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexa	0.003
cd08298	329	cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CA	0.004

>gnl|CDD|176250 cd08290, ETR, 2-enoyl thioester reductase (ETR)

 Score =  277 bits (711), Expect = 5e-94
 Identities = 109/208 (52%), Positives = 140/208 (67%), Gaps = 11/208 (5%)

Query: 1   MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
           +L+D+  L PGD VIQNGANSA GQ VIQ+A+  G+KTIN+VR+R D+++LK  LK+LGA
Sbjct: 137 LLEDFVKLQPGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERLKALGA 196

Query: 61  DYVFTEEEL-----RNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSRE 115
           D+V TEEEL       + + A   +PKLALNCVGG SAT L R L   G MVTYGGMS +
Sbjct: 197 DHVLTEEELRSLLATELLKSAPGGRPKLALNCVGGKSATELARLLSPGGTMVTYGGMSGQ 256

Query: 116 PVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVT- 174
           PV +PTS  IFKDITLRG W+TRW  +     E++ M+ EL E++R GKL AP  + VT 
Sbjct: 257 PVTVPTSLLIFKDITLRGFWLTRW-LKRANPEEKEDMLEELAELIREGKLKAPPVEKVTD 315

Query: 175 --LKNFQEALMNTMSIQGKSGVKYYIDF 200
             L+ F++AL N +   G  G K  +  
Sbjct: 316 DPLEEFKDALANALK-GGGGG-KQVLVM 341

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 341

>gnl|CDD|176645 cd05282, ETR_like, 2-enoyl thioester reductase-like

 Score =  179 bits (455), Expect = 9e-56
 Identities = 77/196 (39%), Positives = 106/196 (54%), Gaps = 9/196 (4%)

Query: 1   MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
           ML +Y  L PGD VIQN ANSA G+ +IQ+A+  G KTIN+VR  + ++     LK+LGA
Sbjct: 129 MLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQVE----ELKALGA 184

Query: 61  DYVFTEEELRNISRDASIPKPK---LALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPV 117
           D V          R           LAL+ VGG SAT L R+L   G +V YG +S EPV
Sbjct: 185 DEVIDSSPEDLAQRVKEATGGAGARLALDAVGGESATRLARSLRPGGTLVNYGLLSGEPV 244

Query: 118 QIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKN 177
             P S FIFKDIT+RG W+ +W   +     ++    E+ +++  G L  P      L++
Sbjct: 245 PFPRSVFIFKDITVRGFWLRQW-LHSATKEAKQETFAEVIKLVEAGVLTTPVGAKFPLED 303

Query: 178 FQEALMNTMSIQGKSG 193
           F+EA+       G+ G
Sbjct: 304 FEEAVAAAEQ-PGRGG 318

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 323

>gnl|CDD|176252 cd08292, ETR_like_2, 2-enoyl thioester reductase (ETR) like proteins, child 2

 Score =  118 bits (298), Expect = 2e-32
 Identities = 68/199 (34%), Positives = 100/199 (50%), Gaps = 15/199 (7%)

Query: 1   MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
           ML D+  + PG  +IQN A  A G+ V  +A   G+  IN+VR    + +L++    LG 
Sbjct: 130 MLLDFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELRA----LGI 185

Query: 61  DYVF-TE-----EELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSR 114
             V  TE     +++R  +  A I    +AL+ VGG  A  LL  L   G +V++G MS 
Sbjct: 186 GPVVSTEQPGWQDKVREAAGGAPI---SVALDSVGGKLAGELLSLLGEGGTLVSFGSMSG 242

Query: 115 EPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVT 174
           EP+QI +   IFK  T+RG W  RW +E      RK M+ EL  +   G+L  P      
Sbjct: 243 EPMQISSGDLIFKQATVRGFWGGRWSQEMSV-EYRKRMIAELLTLALKGQLLLPVEAVFD 301

Query: 175 LKNFQEALMNTMSIQGKSG 193
           L +  +A   +M   G++G
Sbjct: 302 LGDAAKAAAASM-RPGRAG 319

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

 Score =  100 bits (251), Expect = 1e-25
 Identities = 53/198 (26%), Positives = 86/198 (43%), Gaps = 16/198 (8%)

Query: 1   MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
            L D   L PG+ V+ +GA    G   IQ+A+  G   + +V + + ++     LK LGA
Sbjct: 133 ALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLE----LLKELGA 188

Query: 61  DYVF--TEEELRNISRDASIPKP-KLALNCVGGNSATNLLRTLVSKGVMVTYGGMS-REP 116
           D+V    EE+     R+ +  K   + L+ VGG++    L  L   G +V+ G +S   P
Sbjct: 189 DHVINYREEDFVEQVRELTGGKGVDVVLDTVGGDTFAASLAALAPGGRLVSIGALSGGPP 248

Query: 117 VQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLK 176
           V +     + K +TLRG  +     E          + EL +++ +GKL     +   L 
Sbjct: 249 VPLNLLPLLGKRLTLRGVTLGSRDPE-----ALAEALAELFDLLASGKLKPVIDRVYPLA 303

Query: 177 NFQEA---LMNTMSIQGK 191
               A   L+      GK
Sbjct: 304 EAPAAAAHLLLERRTTGK 321

Length = 326

>gnl|CDD|176229 cd08268, MDR2, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 80.0 bits (198), Expect = 6e-18
 Identities = 47/184 (25%), Positives = 75/184 (40%), Gaps = 10/184 (5%)

Query: 1   MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
            L +   L PGD V+   A+S+ G   IQIA   G   I   R  +     +  L +LGA
Sbjct: 135 ALVELAGLRPGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSEK----RDALLALGA 190

Query: 61  DYVFTEEELRNISRDASIPKPK---LALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPV 117
            +V   +E   ++    I   K   +  + VGG     L   L   G +V YG +S EP 
Sbjct: 191 AHVIVTDEEDLVAEVLRITGGKGVDVVFDPVGGPQFAKLADALAPGGTLVVYGALSGEPT 250

Query: 118 QIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKN 177
             P  A + K +T RG+ +        +   R+  +  + + + +G L     +     +
Sbjct: 251 PFPLKAALKKSLTFRGYSLDEI---TLDPEARRRAIAFILDGLASGALKPVVDRVFPFDD 307

Query: 178 FQEA 181
             EA
Sbjct: 308 IVEA 311

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 328

>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 77.4 bits (191), Expect = 2e-17
 Identities = 44/143 (30%), Positives = 63/143 (44%), Gaps = 8/143 (5%)

Query: 1   MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
            L+    L PGD V+  GA    G    Q+A+  G + I  V +R D +KL+   K LGA
Sbjct: 125 ALRRAGVLKPGDTVLVLGA-GGVGLLAAQLAKAAGARVI--VTDRSD-EKLE-LAKELGA 179

Query: 61  DYVF--TEEELRNISRDASIPKPKLALNCVGGNSATNL-LRTLVSKGVMVTYGGMSREPV 117
           D+V    EE+L    R        + ++ VGG       LR L   G +V  GG S  P 
Sbjct: 180 DHVIDYKEEDLEEELRLTGGGGADVVIDAVGGPETLAQALRLLRPGGRIVVVGGTSGGPP 239

Query: 118 QIPTSAFIFKDITLRGHWMTRWQ 140
                  +FK++T+ G      +
Sbjct: 240 LDDLRRLLFKELTIIGSTGGTRE 262

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271

>gnl|CDD|176251 cd08291, ETR_like_1, 2-enoyl thioester reductase (ETR) like proteins, child 1

 Score = 77.3 bits (191), Expect = 5e-17
 Identities = 42/155 (27%), Positives = 73/155 (47%), Gaps = 19/155 (12%)

Query: 14  VIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT------EE 67
           V+   A SA G+ ++++ +  G+K INIVR ++ +D     LK +GA+YV         E
Sbjct: 147 VVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDL----LKKIGAEYVLNSSDPDFLE 202

Query: 68  ELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAF--I 125
           +L+ +          +  + VGG     +L  +     +  YG +S +  + P      I
Sbjct: 203 DLKELIAKL---NATIFFDAVGGGLTGQILLAMPYGSTLYVYGYLSGKLDE-PIDPVDLI 258

Query: 126 FKDITLRGHWMTRW-QKENKESAE--RKSMMNELT 157
           FK+ ++ G W+T W QK   E  +  +K +  EL 
Sbjct: 259 FKNKSIEGFWLTTWLQKLGPEVVKKLKKLVKTELK 293

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176203 cd08241, QOR1, Quinone oxidoreductase (QOR)

 Score = 71.0 bits (175), Expect = 9e-15
 Identities = 45/178 (25%), Positives = 82/178 (46%), Gaps = 9/178 (5%)

Query: 8   LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV--FT 65
           L PG+ V+  GA    G   +Q+A+  G + I    + +   KL    ++LGAD+V  + 
Sbjct: 137 LQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEE---KLA-LARALGADHVIDYR 192

Query: 66  EEELRNISRDASIPK-PKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAF 124
           + +LR   +  +  +   +  + VGG+     LR+L   G ++  G  S E  QIP +  
Sbjct: 193 DPDLRERVKALTGGRGVDVVYDPVGGDVFEASLRSLAWGGRLLVIGFASGEIPQIPANLL 252

Query: 125 IFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEAL 182
           + K+I++ G +   + +   E       + EL +++  GK+         L+   EAL
Sbjct: 253 LLKNISVVGVYWGAYARREPELLRA--NLAELFDLLAEGKIRPHVSAVFPLEQAAEAL 308

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176211 cd08249, enoyl_reductase_like, enoyl_reductase_like

 Score = 67.2 bits (165), Expect = 2e-13
 Identities = 49/200 (24%), Positives = 76/200 (38%), Gaps = 29/200 (14%)

Query: 9   SPGDVVIQNGANSACGQNVIQIARHWGLKTINIV--RNRDDIDKLKSYLKSLGADYVF-- 64
           S G  V+  G +S+ G   IQ+A+  G K I     +N D        +KSLGAD VF  
Sbjct: 153 SKGKPVLIWGGSSSVGTLAIQLAKLAGYKVITTASPKNFD-------LVKSLGADAVFDY 205

Query: 65  ----TEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIP 120
                 E++R  +      K + AL+C+    +  L    + +        +   P +  
Sbjct: 206 HDPDVVEDIRAATGG----KLRYALDCISTPESAQLCAEALGRSGGGKLVSLLPVPEETE 261

Query: 121 TSAFIFKDITLRGHWMTRWQKENKESAERKSMMNE-LTEMMRTGKLAAPAHKFV--TLKN 177
               +     L          E  E  E   +  + L E++  GKL     + V   L+ 
Sbjct: 262 PRKGVKVKFVLGYTVF----GEIPEDREFGEVFWKYLPELLEEGKLKPHPVRVVEGGLEG 317

Query: 178 FQEALMNTMSIQGK-SGVKY 196
            QE L   +  +GK SG K 
Sbjct: 318 VQEGL--DLLRKGKVSGEKL 335

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 339

>gnl|CDD|176191 cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

 Score = 64.5 bits (158), Expect = 2e-12
 Identities = 39/186 (20%), Positives = 68/186 (36%), Gaps = 29/186 (15%)

Query: 1   MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
            L +   L  G  V+ +GA    G   +Q+A+  G + I      +       +L+SLGA
Sbjct: 135 ALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAAN-----ADFLRSLGA 189

Query: 61  ----DYVFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREP 116
               DY   + E                L+ VGG +    L  +   G +V+        
Sbjct: 190 DEVIDYTKGDFERAAAPGGV-----DAVLDTVGGETLARSLALVKPGGRLVS-------I 237

Query: 117 VQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLK 176
              P +    K   +R  ++  + + + E       + EL E++  GKL     +   L+
Sbjct: 238 AGPPPAEQAAKRRGVRAGFV--FVEPDGE------QLAELAELVEAGKLRPVVDRVFPLE 289

Query: 177 NFQEAL 182
           +  EA 
Sbjct: 290 DAAEAH 295

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 309

>gnl|CDD|215721 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase

 Score = 60.4 bits (147), Expect = 4e-12
 Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 13/120 (10%)

Query: 24  GQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT------EEELRNISRDAS 77
           G   +Q+A+  G   + I  +R + +KL+   K LGAD+V         E +R ++    
Sbjct: 3   GLAAVQLAKALGAARV-IAVDRSE-EKLE-LAKELGADHVINYRDEDFVERVRELTGGRG 59

Query: 78  IPKPKLALNCVGGNSATN-LLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWM 136
                + ++CVG  +     L  L   G +V  G     PV  P    + K++T+ G   
Sbjct: 60  ---VDVVIDCVGAPATLEQALELLRPGGRVVVVGLPGGAPVPFPLRDLLLKELTILGSLG 116

Length = 131

>gnl|CDD|176227 cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family

 Score = 63.0 bits (154), Expect = 5e-12
 Identities = 46/185 (24%), Positives = 75/185 (40%), Gaps = 18/185 (9%)

Query: 1   MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
           ML     L PG+ V+ +GA S  G   IQIA+ +G   I    + D +++     K LGA
Sbjct: 157 MLVTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLER----AKELGA 212

Query: 61  DYVF--TEEELRNISRD-ASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPV 117
           DYV    +E+     R+        + +  VG  +    L++L   G +VT G  +    
Sbjct: 213 DYVIDYRKEDFVREVRELTGKRGVDVVVEHVGAATWEKSLKSLARGGRLVTCGATTGYEA 272

Query: 118 QIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKN 177
            I      ++ +++ G  M          AE    ++E   ++  GKL         L+ 
Sbjct: 273 PIDLRHVFWRQLSILGSTMGTK-------AE----LDEALRLVFRGKLKPVIDSVFPLEE 321

Query: 178 FQEAL 182
             EA 
Sbjct: 322 AAEAH 326

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 342

>gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only]

 Score = 63.0 bits (154), Expect = 6e-12
 Identities = 44/188 (23%), Positives = 70/188 (37%), Gaps = 37/188 (19%)

Query: 7   SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE 66
           ++ PG  V   GA    G   +Q A+  G + I I R+ +   KL+   K LGAD+V   
Sbjct: 163 NVKPGKWVAVVGA-GGLGHMAVQYAKAMGAEVIAITRSEE---KLE-LAKKLGADHVIN- 216

Query: 67  EELRNISRDASIPKP-----KLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPV-QIP 120
                 S D+   +         ++ VG  +    L+ L   G +V  G     P+  +P
Sbjct: 217 ------SSDSDALEAVKEIADAIIDTVGPATLEPSLKALRRGGTLVLVGLPGGGPIPLLP 270

Query: 121 TSAFIFKDITLRGHW-MTRWQKENKESAERKSMMNELTEMMR---TGKLAAPAHKFVTLK 176
               I K+I++ G    TR                +L E +     GK+     + + L 
Sbjct: 271 AFLLILKEISIVGSLVGTRA---------------DLEEALDFAAEGKIKPEILETIPLD 315

Query: 177 NFQEALMN 184
              EA   
Sbjct: 316 EINEAYER 323

Length = 339

>gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 62.2 bits (152), Expect = 1e-11
 Identities = 49/204 (24%), Positives = 78/204 (38%), Gaps = 34/204 (16%)

Query: 1   MLKDYNSLSPGD-VVIQNGANSACGQNVIQIARHWGLKTINIV--RNRDDIDKLKSYLKS 57
            L+D   + PG  V+I NGA+   G   +QIA+  G     +   RN +        ++S
Sbjct: 134 ALRDAGKVKPGQRVLI-NGASGGVGTFAVQIAKALGAHVTGVCSTRNAE-------LVRS 185

Query: 58  LGADYVF--TEEELRNISRDASIPKPKLALNCVGGN--SATNLLRTLVSKGVMVTYGGMS 113
           LGAD V   T E+   ++      K  +  + VG +  S       L   G  V+ GG  
Sbjct: 186 LGADEVIDYTTEDFVALTAGG--EKYDVIFDAVGNSPFSLYRASLALKPGGRYVSVGGGP 243

Query: 114 REPVQIPTSAFIFKDITLRGHWMTRWQ----KENKESAERKSMMNELTEMMRTGKLAAPA 169
              + +     +   +   G    R +    K N E       + +L E++  GKL    
Sbjct: 244 SGLLLVLLLLPLT--LGGGGR---RLKFFLAKPNAE------DLEQLAELVEEGKLKPVI 292

Query: 170 HKFVTLKNFQEALMNTMS--IQGK 191
                L++  EA     S   +GK
Sbjct: 293 DSVYPLEDAPEAYRRLKSGRARGK 316

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|176225 cd08264, Zn_ADH_like2, Alcohol dehydrogenases of the MDR family

 Score = 59.7 bits (145), Expect = 9e-11
 Identities = 45/185 (24%), Positives = 78/185 (42%), Gaps = 30/185 (16%)

Query: 7   SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT- 65
            L PG+ V+  GA+   G   +Q+A+  G + I + R        K +LK  GAD V   
Sbjct: 159 GLGPGETVVVFGASGNTGIFAVQLAKMMGAEVIAVSR--------KDWLKEFGADEVVDY 210

Query: 66  ---EEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTS 122
              EE+++ I++ A +      +N +G +     L  L   G +VT+G ++   V++  S
Sbjct: 211 DEVEEKVKEITKMADV-----VINSLGSSFWDLSLSVLGRGGRLVTFGTLTGGEVKLDLS 265

Query: 123 AFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEAL 182
               K I++ G            +   +  + EL ++     L     K   L+  +EAL
Sbjct: 266 DLYSKQISIIG-----------STGGTRKELLELVKIA--KDLKVKVWKTFKLEEAKEAL 312

Query: 183 MNTMS 187
               S
Sbjct: 313 KELFS 317

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 47/180 (26%), Positives = 83/180 (46%), Gaps = 25/180 (13%)

Query: 7   SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT- 65
            +  GD V+  GA    G + IQ+A+  G + I + R+ +   KLK  LK LGADYV   
Sbjct: 159 GVKKGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPE---KLK-ILKELGADYVIDG 214

Query: 66  ---EEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTS 122
               E+++ +   A +      +  VG  +    LR+L   G +V  G ++ +P  +   
Sbjct: 215 SKFSEDVKKLG-GADV-----VIELVGSPTIEESLRSLNKGGRLVLIGNVTPDPAPLRPG 268

Query: 123 AFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEAL 182
             I K+I + G             +  K+ + E  ++++ GK+     + V+L++  EAL
Sbjct: 269 LLILKEIRIIGS-----------ISATKADVEEALKLVKEGKIKPVIDRVVSLEDINEAL 317

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 332

>gnl|CDD|176254 cd08294, leukotriene_B4_DH_like, 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

 Score = 57.3 bits (139), Expect = 5e-10
 Identities = 50/191 (26%), Positives = 79/191 (41%), Gaps = 34/191 (17%)

Query: 9   SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT--- 65
             G+ V+ NGA  A G  V QIA+  G K I    +    DK+  +LK LG D VF    
Sbjct: 142 KAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSD---DKVA-WLKELGFDAVFNYKT 197

Query: 66  ---EEELRNISRDASIPKPKLALNC----VGGNSATNLLRTLVSKGVMVTYGGMS--REP 116
              EE L+  + D         ++C    VGG  ++ +L  +   G +   G +S   + 
Sbjct: 198 VSLEEALKEAAPD--------GIDCYFDNVGGEFSSTVLSHMNDFGRVAVCGSISTYNDK 249

Query: 117 VQIPTSAF----IFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKF 172
                       IFK + + G  + RWQ    E+      + +L + ++ GKL    H  
Sbjct: 250 EPKKGPYVQETIIFKQLKMEGFIVYRWQDRWPEA------LKQLLKWIKEGKLKYREHVT 303

Query: 173 VTLKNFQEALM 183
              +N  +A +
Sbjct: 304 EGFENMPQAFI 314

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|184316 PRK13771, PRK13771, putative alcohol dehydrogenase; Provisional

 Score = 56.6 bits (137), Expect = 1e-09
 Identities = 44/180 (24%), Positives = 72/180 (40%), Gaps = 27/180 (15%)

Query: 8   LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE- 66
           +  G+ V+  GA    G + IQ+A+  G K I +  +      +  Y     ADYV    
Sbjct: 160 VKKGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKAKIVSKY-----ADYVIVGS 214

Query: 67  ---EELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPV-QIPTS 122
              EE++ I   A I      +  VG  +    LR+L   G ++  G +   P   +   
Sbjct: 215 KFSEEVKKIG-GADI-----VIETVGTPTLEESLRSLNMGGKIIQIGNVDPSPTYSLRLG 268

Query: 123 AFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEAL 182
             I KDI + GH           SA ++ +   L +++  GK+       V+L    +AL
Sbjct: 269 YIILKDIEIIGH----------ISATKRDVEEAL-KLVAEGKIKPVIGAEVSLSEIDKAL 317

Length = 334

>gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

 Score = 54.7 bits (132), Expect = 4e-09
 Identities = 32/183 (17%), Positives = 67/183 (36%), Gaps = 19/183 (10%)

Query: 24  GQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPK- 82
           G   I +A+  G   + IV +R   ++L+   ++ GAD V    E    +    +   + 
Sbjct: 181 GLLAIALAKLLGASVV-IVVDRSP-ERLELAKEAGGADVVVNPSEDDAGAEILELTGGRG 238

Query: 83  --LALNCVGGNSATNLLRTLVSKGVMVTYGGMS-REPVQIPTSAFIFKDITLRGHWMTRW 139
             + +  VG   A +     +  G  V   G+   E + +P    + K++TLRG      
Sbjct: 239 ADVVIEAVGSPPALDQALEALRPGGTVVVVGVYGGEDIPLPAGLVVSKELTLRGSLRP-- 296

Query: 140 QKENKESAERKSMMNELTEMMRTGKLAAPA--HKFVTLKNFQEALMNTMSIQGKSGVKYY 197
                     +       +++ +GK+         + L +  EA     + + +  +K  
Sbjct: 297 --------SGREDFERALDLLASGKIDPEKLITHRLPLDDAAEAYE-LFADRKEEAIKVV 347

Query: 198 IDF 200
           +  
Sbjct: 348 LKP 350

Length = 350

>gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

 Score = 53.4 bits (129), Expect = 1e-08
 Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 15/134 (11%)

Query: 8   LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGADYVFTE 66
           + PG+ V+  G     G N +QIA+  G   I +     DI + K  L K LGAD V   
Sbjct: 163 VKPGETVLVIGL-GGLGLNAVQIAKAMGAAVIAV-----DIKEEKLELAKELGADEVLNS 216

Query: 67  EELRNISRDASIPKPKL--ALNCVGGNSATNLLRTLVSKG---VMVTYGGMSREPVQIPT 121
            +     + A+          + VG        +  V  G   V+V   G+ R+ + +  
Sbjct: 217 LDDSPKDKKAAGLGGGFDVIFDFVGTQPTFEDAQKAVKPGGRIVVV---GLGRDKLTVDL 273

Query: 122 SAFIFKDITLRGHW 135
           S  I +++ + G +
Sbjct: 274 SDLIARELRIIGSF 287

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 338

>gnl|CDD|176190 cd05288, PGDH, Prostaglandin dehydrogenases

 Score = 52.5 bits (127), Expect = 2e-08
 Identities = 42/207 (20%), Positives = 71/207 (34%), Gaps = 44/207 (21%)

Query: 2   LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS-LGA 60
           L +     PG+ V+ + A  A G  V QIA+  G + + I       +K + +L   LG 
Sbjct: 137 LTEIGKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIA---GSDEKCR-WLVEELGF 192

Query: 61  DYVFTEEELRNISRDASIPKPKLALNC----------VGG---NSATNLLRT---LVSKG 104
           D          I+         L              VGG   ++A  LL     +   G
Sbjct: 193 DAA--------INYKTPDLAEALKEAAPDGIDVYFDNVGGEILDAALTLLNKGGRIALCG 244

Query: 105 VMVTYGGMSREPVQIPTSAFIFKDITLRG----HWMTRWQKENKESAERKSMMNELTEMM 160
            +  Y        +   +  I K +T++G     +  R+ +           + EL + +
Sbjct: 245 AISQYNATEPPGPKNLGN-IITKRLTMQGFIVSDYADRFPE----------ALAELAKWL 293

Query: 161 RTGKLAAPAHKFVTLKNFQEALMNTMS 187
             GKL         L+N  EA +   +
Sbjct: 294 AEGKLKYREDVVEGLENAPEAFLGLFT 320

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|176215 cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

 Score = 51.0 bits (123), Expect = 7e-08
 Identities = 38/181 (20%), Positives = 70/181 (38%), Gaps = 25/181 (13%)

Query: 8   LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--T 65
              G+ V+ +G + A G   +Q+AR  G + I    + +  +     ++  GAD VF   
Sbjct: 142 AKAGETVLVHGGSGAVGHAAVQLARWAGARVIATASSAEGAEL----VRQAGADAVFNYR 197

Query: 66  EEELRNISRDASIPK-PKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAF 124
            E+L +    A+  +   + +  +   +    L  L   G +V YG        IP +  
Sbjct: 198 AEDLADRILAATAGQGVDVIIEVLANVNLAKDLDVLAPGGRIVVYGSGGLRGT-IPINPL 256

Query: 125 IFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKL------------AAPAHKF 172
           + K+ ++RG  +     E + +A        +   +  G L            AA AH+ 
Sbjct: 257 MAKEASIRGVLLYTATPEERAAAAE-----AIAAGLADGALRPVIAREYPLEEAAAAHEA 311

Query: 173 V 173
           V
Sbjct: 312 V 312

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|131872 TIGR02825, B4_12hDH, leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

 Score = 51.2 bits (122), Expect = 7e-08
 Identities = 50/198 (25%), Positives = 84/198 (42%), Gaps = 24/198 (12%)

Query: 11  GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TEE 67
           G+ V+ N A  A G  V QIA+  G K +    + + +     YLK LG D  F   T +
Sbjct: 139 GETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVA----YLKKLGFDVAFNYKTVK 194

Query: 68  ELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSRE------PVQIPT 121
            L    + AS        + VGG  +  ++  +   G +   G +S        P   P 
Sbjct: 195 SLEETLKKASPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGAISTYNRTGPLPPGPPP 254

Query: 122 SAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVT--LKNFQ 179
              I++++ + G  + RWQ E ++ A     + EL + +  GK+     ++V    +N  
Sbjct: 255 EIVIYQELRMEGFIVNRWQGEVRQKA-----LKELLKWVLEGKIQ--YKEYVIEGFENMP 307

Query: 180 EALMNTMSIQ--GKSGVK 195
            A M  +  +  GK+ VK
Sbjct: 308 AAFMGMLKGENLGKTIVK 325

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. Length = 325

>gnl|CDD|222256 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase

 Score = 46.6 bits (111), Expect = 5e-07
 Identities = 30/128 (23%), Positives = 49/128 (38%), Gaps = 22/128 (17%)

Query: 58  LGADYVFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPV 117
           LGAD V       +     +     + L+ VGG +    L  L   G +V+ GG    P 
Sbjct: 1   LGADEVIDYTT-EDFEEATAGEGVDVVLDTVGGETLLRALLALKPGGRLVSIGG----PD 55

Query: 118 QIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKL------------ 165
            + + A       +RG ++           E  + + EL E++  GKL            
Sbjct: 56  LLLSVAAKAGGRGVRGVFLF-----PVSPGEAGADLAELAELVEAGKLRPVIDRVFPLEE 110

Query: 166 AAPAHKFV 173
           AA AH+++
Sbjct: 111 AAEAHRYL 118

Length = 129

>gnl|CDD|176232 cd08271, MDR5, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 45/188 (23%), Positives = 71/188 (37%), Gaps = 18/188 (9%)

Query: 2   LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIV--RNRDDIDKLKSYLKSLG 59
           L     +  G  ++  G     G   +Q+A+  GL+ I     RN +       Y+KSLG
Sbjct: 133 LFKKLRIEAGRTILITGGAGGVGSFAVQLAKRAGLRVITTCSKRNFE-------YVKSLG 185

Query: 60  ADYVFTEEELRNISRDASIPKPK---LALNCVGGNSATNLLRTLVSKGVMVTYGGMSREP 116
           AD+V    +     R   I   +     L+ VGG +A  L  TL   G +V   G     
Sbjct: 186 ADHVIDYNDEDVCERIKEITGGRGVDAVLDTVGGETAAALAPTLAFNGHLVCIQGRPDAS 245

Query: 117 VQIP-TSAFIFKDITLRGHWMTRWQKENKES-AERKSMMNELTEMMRTGKLAAPAHKFVT 174
              P T A    ++ L           +  +  + +    EL E++  GKL     + + 
Sbjct: 246 PDPPFTRALSVHEVALGAA----HDHGDPAAWQDLRYAGEELLELLAAGKLEPLVIEVLP 301

Query: 175 LKNFQEAL 182
            +   EAL
Sbjct: 302 FEQLPEAL 309

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 325

>gnl|CDD|176180 cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase

 Score = 45.1 bits (108), Expect = 7e-06
 Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 13/132 (9%)

Query: 8   LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT-- 65
           L  G+ V+ +G  S  G   IQ+A+  G + I    +    +KL+   ++LGAD      
Sbjct: 137 LKAGETVLIHGGASGVGTAAIQLAKALGARVIATAGSE---EKLE-ACRALGADVAINYR 192

Query: 66  ----EEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPT 121
                EE++  +    +    + L+ VGG+     LR L   G +V  G +     ++  
Sbjct: 193 TEDFAEEVKEATGGRGVD---VILDMVGGDYLARNLRALAPDGRLVLIGLLGGAKAELDL 249

Query: 122 SAFIFKDITLRG 133
           +  + K +TL G
Sbjct: 250 APLLRKRLTLTG 261

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176235 cd08274, MDR9, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 8/128 (6%)

Query: 8   LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE 67
           +  G+ V+  GA+   G  ++Q+A+  G   I +       + +++    LGAD V   +
Sbjct: 175 VGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVA-GAAKEEAVRA----LGADTVILRD 229

Query: 68  ELRNISRDASIPKPKL--ALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFI 125
               ++   ++    +    + VGG    +LLR L   G  VT G ++   V++      
Sbjct: 230 AP-LLADAKALGGEPVDVVADVVGGPLFPDLLRLLRPGGRYVTAGAIAGPVVELDLRTLY 288

Query: 126 FKDITLRG 133
            KD+TL G
Sbjct: 289 LKDLTLFG 296

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 350

>gnl|CDD|176188 cd05285, sorbitol_DH, Sorbitol dehydrogenase

 Score = 43.6 bits (104), Expect = 2e-05
 Identities = 35/137 (25%), Positives = 55/137 (40%), Gaps = 18/137 (13%)

Query: 7   SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLK-SYLKSLGADYVF- 64
            + PGD V+  GA    G     +A+ +G   + +     DID  +  + K LGA +   
Sbjct: 159 GVRPGDTVLVFGA-GPIGLLTAAVAKAFGATKVVVT----DIDPSRLEFAKELGATHTVN 213

Query: 65  -----TEEELRNISRDASIPKPKLALNCVGGNSATNL-LRTLVSKG--VMVTYGGMSREP 116
                T E    I+       P + + C G  S     +      G  V+V   GM +  
Sbjct: 214 VRTEDTPESAEKIAELLGGKGPDVVIECTGAESCIQTAIYATRPGGTVVLV---GMGKPE 270

Query: 117 VQIPTSAFIFKDITLRG 133
           V +P SA   ++I +RG
Sbjct: 271 VTLPLSAASLREIDIRG 287

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 343

>gnl|CDD|176257 cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 43/201 (21%), Positives = 70/201 (34%), Gaps = 30/201 (14%)

Query: 8   LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDI--DKLKSYLKSLGADYVF- 64
           L PGD V+ +GA    G   +Q A+  GL+ I I     D+  +KL+   K LGAD    
Sbjct: 163 LKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAI-----DVGDEKLE-LAKELGADAFVD 216

Query: 65  --TEEELRNISRDASIPKPKLALNCVGGNSATNL-LRTLVSKGVMVTYGGMSREPVQIPT 121
               +++  +            +      +A    L  L   G +V  G      + +  
Sbjct: 217 FKKSDDVEAVKELTGGGGAHAVVVTAVSAAAYEQALDYLRPGGTLVCVGLPPGGFIPLDP 276

Query: 122 SAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEA 181
              + + IT+ G  +   Q            + E  E    GK+         L++  E 
Sbjct: 277 FDLVLRGITIVGSLVGTRQ-----------DLQEALEFAARGKVKPHIQVV-PLEDLNEV 324

Query: 182 L--MNTMSIQGKSGVKYYIDF 200
              M    I G    +  +DF
Sbjct: 325 FEKMEEGKIAG----RVVVDF 341

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 14/131 (10%)

Query: 9   SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---- 64
           + GD V+  GA    G  VIQ+A+  G + I  V + DD ++L+ + + LGAD       
Sbjct: 158 TAGDTVLVVGAGPI-GLGVIQVAKARGARVI--VVDIDD-ERLE-FARELGADDTINVGD 212

Query: 65  --TEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTS 122
                 LR ++         + ++  G  ++      LV+ G  V   G+S+ PV  P  
Sbjct: 213 EDVAARLRELTDG---EGADVVIDATGNPASMEEAVELVAHGGRVVLVGLSKGPVTFPDP 269

Query: 123 AFIFKDITLRG 133
            F  K++T+ G
Sbjct: 270 EFHKKELTILG 280

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176183 cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putative quinone oxidoreductases

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 16/106 (15%)

Query: 11  GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELR 70
           G V++  GA    G   + I    G   + +    +  D    YLKSLGA  V   E+L 
Sbjct: 148 GPVLV-TGATGGVGSIAVAILAKLGYTVVALTGKEEQAD----YLKSLGASEVLDREDLL 202

Query: 71  NISRDASIPKPKL------ALNCVGGNSATNLLRTLVSKGVMVTYG 110
           + S+     KP L      A++ VGG+   NLL+     GV+ + G
Sbjct: 203 DESK-----KPLLKARWAGAIDTVGGDVLANLLKQTKYGGVVASCG 243

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176249 cd08289, MDR_yhfp_like, Yhfp putative quinone oxidoreductases

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 41/132 (31%), Positives = 58/132 (43%), Gaps = 15/132 (11%)

Query: 6   NSLSP--GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV 63
           N L+P  G V++  GA    G   + I    G + +      D  D    YLK LGA  V
Sbjct: 141 NGLTPEQGPVLVT-GATGGVGSLAVSILAKLGYEVVASTGKADAAD----YLKKLGAKEV 195

Query: 64  FTEEELRNISRDASIPKPKLA--LNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPT 121
              EEL+  S    + K + A  ++ VGG +   LL TL   G  V   G++    ++ T
Sbjct: 196 IPREELQEESIKP-LEKQRWAGAVDPVGGKTLAYLLSTLQYGGS-VAVSGLT-GGGEVET 252

Query: 122 SAFIFKDITLRG 133
           + F F    LRG
Sbjct: 253 TVFPF---ILRG 261

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 326

>gnl|CDD|176189 cd05286, QOR2, Quinone oxidoreductase (QOR)

 Score = 40.5 bits (96), Expect = 3e-04
 Identities = 39/182 (21%), Positives = 70/182 (38%), Gaps = 24/182 (13%)

Query: 10  PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--TEE 67
           PGD V+ + A    G  + Q A+  G   I  V      +K +   ++ GAD+V    +E
Sbjct: 136 PGDTVLVHAAAGGVGLLLTQWAKALGATVIGTV---SSEEKAE-LARAAGADHVINYRDE 191

Query: 68  EL----RNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSA 123
           +     R I+    +    +  + VG ++    L +L  +G +V++G  S          
Sbjct: 192 DFVERVREITGGRGVD---VVYDGVGKDTFEGSLDSLRPRGTLVSFGNASGPVPPFDLLR 248

Query: 124 FIFKDITL-R---GHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQ 179
                + L R    H++           E  +   EL + + +GKL     K   L +  
Sbjct: 249 LSKGSLFLTRPSLFHYIAT-------REELLARAAELFDAVASGKLKVEIGKRYPLADAA 301

Query: 180 EA 181
           +A
Sbjct: 302 QA 303

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone and 1,4-naphthoquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 320

>gnl|CDD|173547 PTZ00354, PTZ00354, alcohol dehydrogenase; Provisional

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 26/116 (22%), Positives = 42/116 (36%), Gaps = 8/116 (6%)

Query: 2   LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD 61
           LK +  +  G  V+ +   S  G    Q+A  +G  TI    + + +D  K     +   
Sbjct: 132 LKKHGDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFCKKLAAIILIR 191

Query: 62  Y----VFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMS 113
           Y     F  +  +            L L+CVGG+  +     L   G  + YG M 
Sbjct: 192 YPDEEGFAPKVKKLTGEKGV----NLVLDCVGGSYLSETAEVLAVDGKWIVYGFMG 243

Length = 334

>gnl|CDD|176206 cd08244, MDR_enoyl_red, Possible enoyl reductase

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 7/117 (5%)

Query: 8   LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV--FT 65
           L+PGDVV+   A    G  ++Q+A+  G   +               +++LGAD    +T
Sbjct: 140 LTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTAL----VRALGADVAVDYT 195

Query: 66  EEELRNISRDA-SIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPT 121
             +  +  R+A       + L+ VGG      L  L   G  +TYG  S E   +  
Sbjct: 196 RPDWPDQVREALGGGGVTVVLDGVGGAIGRAALALLAPGGRFLTYGWASGEWTALDE 252

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|225041 COG2130, COG2130, Putative NADP-dependent oxidoreductases [General function prediction only]

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 16/54 (29%), Positives = 23/54 (42%)

Query: 2   LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL 55
           L D      G+ V+ + A  A G  V QIA+  G + + I    +  D L   L
Sbjct: 142 LLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGAEKCDFLTEEL 195

Length = 340

>gnl|CDD|176231 cd08270, MDR4, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 12/128 (9%)

Query: 11  GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELR 70
           G  V+  GA+   G+  +Q+A   G   + +V +    + L+     LGA      E + 
Sbjct: 133 GRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLRE----LGA-----AEVVV 183

Query: 71  NISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFK--D 128
             S  +  P   L ++ VGG      L  L   G +V+ G  S EP     +AF+     
Sbjct: 184 GGSELSGAPV-DLVVDSVGGPQLARALELLAPGGTVVSVGSSSGEPAVFNPAAFVGGGGG 242

Query: 129 ITLRGHWM 136
             L   ++
Sbjct: 243 RRLYTFFL 250

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 305

>gnl|CDD|176224 cd08263, Zn_ADH10, Alcohol dehydrogenases of the MDR family

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 45/192 (23%), Positives = 78/192 (40%), Gaps = 31/192 (16%)

Query: 2   LKDYNSLSPGD---VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL 58
           LK    + PG+   V+   G  S+     IQ+A+ +G   I  V  RD  +KL    K L
Sbjct: 179 LKHAADVRPGETVAVIGVGGVGSSA----IQLAKAFGASPIIAVDVRD--EKLAK-AKEL 231

Query: 59  GADYVF--TEEELRNISRDASIPK-PKLALNCVGGNSATNLLRTLVSKG---VMVTYGGM 112
           GA +     +E+     R+ +  +   + +  +G      L   +V  G   V+V     
Sbjct: 232 GATHTVNAAKEDAVAAIREITGGRGVDVVVEALGKPETFKLALDVVRDGGRAVVVGLAPG 291

Query: 113 SREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKL---AAPA 169
                +IP +  + + I + G +  R +++          + EL  +  +GKL   A   
Sbjct: 292 GAT-AEIPITRLVRRGIKIIGSYGARPRQD----------LPELVGLAASGKLDPEALVT 340

Query: 170 HKFVTLKNFQEA 181
           HK+  L+   EA
Sbjct: 341 HKY-KLEEINEA 351

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 367

>gnl|CDD|176234 cd08273, MDR8, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 39/208 (18%), Positives = 66/208 (31%), Gaps = 49/208 (23%)

Query: 1   MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
           ML     +  G  V+ +GA+   GQ ++++A   G +       R+      + L+ LGA
Sbjct: 130 MLHRAAKVLTGQRVLIHGASGGVGQALLELALLAGAEVYGTASERNH-----AALRELGA 184

Query: 61  --------------------DYVFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTL 100
                               D VF      +     +   P   L C GGNS+       
Sbjct: 185 TPIDYRTKDWLPAMLTPGGVDVVFDGVGGESYEESYAALAPGGTLVCYGGNSSLL----- 239

Query: 101 VSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTR-------WQKENKESAERKSMM 153
                     G           A + K   L+     R       W+   ++    +  +
Sbjct: 240 ---------QGRRSLAALGSLLARLAK---LKLLPTGRRATFYYVWRDRAEDPKLFRQDL 287

Query: 154 NELTEMMRTGKLAAPAHKFVTLKNFQEA 181
            EL +++  GK+     K + L    EA
Sbjct: 288 TELLDLLAKGKIRPKIAKRLPLSEVAEA 315

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 331

>gnl|CDD|176202 cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexanoate dehydrogenase

 Score = 37.6 bits (88), Expect = 0.003
 Identities = 32/163 (19%), Positives = 63/163 (38%), Gaps = 28/163 (17%)

Query: 28  IQIARHWGLKTINIVRNRDDID--KLKSYLKSLGADYVFTEEELRNISRDASIP--KPKL 83
           + + +  G   I +V    DID  KL++     GAD V    +     R           
Sbjct: 192 LALLKALGPANIIVV----DIDEAKLEAAKA-AGADVVVNGSDPDAAKRIIKAAGGGVDA 246

Query: 84  ALNCVGGNSATNLLRTLVSKG---VMV-TYGGMSREPVQIPTSAFIFKDITLRGHWMTRW 139
            ++ V  ++  +L   +++KG   V+V  +GG       +P      + +T++G ++   
Sbjct: 247 VIDFVNNSATASLAFDILAKGGKLVLVGLFGG----EATLPLPLLPLRALTIQGSYVGSL 302

Query: 140 QKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEAL 182
           ++           + EL  + + GKL         L +  +AL
Sbjct: 303 EE-----------LRELVALAKAGKLKPIPLTERPLSDVNDAL 334

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 350

>gnl|CDD|176258 cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 37.2 bits (87), Expect = 0.004
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 27  VIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASI 78
            +QIAR+ G +     R+ +  +      + LGAD+    ++L     DA+I
Sbjct: 183 ALQIARYQGAEVFAFTRSGEHQE----LARELGADWAGDSDDLPPEPLDAAI 230

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 329

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	202
KOG1197|consensus	336		99.97
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	99.97
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	99.96
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	99.96
COG2130	340	Putative NADP-dependent oxidoreductases [General f	99.96
KOG0025|consensus	354		99.95
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	99.95
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	99.94
KOG1198|consensus	347		99.94
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	99.94
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	99.94
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	99.93
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	99.93
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	99.93
KOG0024|consensus	354		99.93
PLN02827	378	Alcohol dehydrogenase-like	99.93
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	99.93
PLN02586	360	probable cinnamyl alcohol dehydrogenase	99.93
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	99.93
PLN02178	375	cinnamyl-alcohol dehydrogenase	99.92
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	99.92
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	99.92
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	99.92
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	99.92
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	99.92
KOG1202|consensus	2376		99.92
PLN02740	381	Alcohol dehydrogenase-like	99.91
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	99.91
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	99.91
PLN02514	357	cinnamyl-alcohol dehydrogenase	99.91
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	99.91
KOG0023|consensus	360		99.91
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	99.91
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	99.91
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	99.9
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	99.9
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	99.9
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	99.9
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	99.9
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	99.89
KOG1196|consensus	343		99.89
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	99.89
KOG0022|consensus	375		99.89
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	99.89
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	99.89
PTZ00354	334	alcohol dehydrogenase; Provisional	99.89
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	99.89
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	99.88
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	99.88
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	99.88
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	99.87
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	99.87
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	99.87
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	99.87
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	99.87
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	99.87
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	99.86
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	99.86
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	99.86
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	99.86
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	99.86
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	99.86
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	99.85
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	99.85
PRK13771	334	putative alcohol dehydrogenase; Provisional	99.85
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	99.85
cd08251	303	polyketide_synthase polyketide synthase. Polyketid	99.85
cd08288	324	MDR_yhdh Yhdh putative quinone oxidoreductases. Yh	99.85
PRK10083	339	putative oxidoreductase; Provisional	99.84
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	99.84
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	99.84
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	99.84
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	99.84
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	99.84
cd05195	293	enoyl_red enoyl reductase of polyketide synthase.	99.84
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	99.84
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	99.84
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	99.84
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	99.84
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	99.84
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	99.83
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	99.83
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	99.83
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	99.83
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	99.83
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	99.83
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	99.83
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	99.83
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	99.83
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	99.83
cd08262	341	Zn_ADH8 Alcohol dehydrogenases of the MDR family.	99.83
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	99.83
smart00829	288	PKS_ER Enoylreductase. Enoylreductase in Polyketid	99.83
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	99.82
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	99.82
cd08272	326	MDR6 Medium chain dehydrogenases/reductase (MDR)/z	99.82
cd08252	336	AL_MDR Arginate lyase and other MDR family members	99.82
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	99.82
cd08249	339	enoyl_reductase_like enoyl_reductase_like. Member	99.82
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	99.82
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	99.82
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	99.82
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	99.81
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	99.81
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	99.81
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	99.81
PLN02702	364	L-idonate 5-dehydrogenase	99.81
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	99.81
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	99.81
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	99.8
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	99.8
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	99.79
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	99.79
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	99.79
cd08271	325	MDR5 Medium chain dehydrogenases/reductase (MDR)/z	99.79
cd08273	331	MDR8 Medium chain dehydrogenases/reductase (MDR)/z	99.78
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	99.78
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	99.78
cd08275	337	MDR3 Medium chain dehydrogenases/reductase (MDR)/z	99.76
cd08247	352	AST1_like AST1 is a cytoplasmic protein associated	99.76
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	99.76
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	99.76
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	99.75
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	99.74
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	99.72
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	99.69
PF13602	127	ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQ	99.69
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	99.6
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	99.6
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	99.59
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	99.0
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	98.74
PRK08306	296	dipicolinate synthase subunit A; Reviewed	98.67
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.67
KOG1205|consensus	282		98.55
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	98.54
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	98.52
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	98.51
PLN02494	477	adenosylhomocysteinase	98.43
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	98.39
PRK12742	237	oxidoreductase; Provisional	98.37
PRK07109	334	short chain dehydrogenase; Provisional	98.35
PRK06139	330	short chain dehydrogenase; Provisional	98.33
PRK08339	263	short chain dehydrogenase; Provisional	98.32
COG0300	265	DltE Short-chain dehydrogenases of various substra	98.32
PRK05993	277	short chain dehydrogenase; Provisional	98.28
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	98.25
PRK06182	273	short chain dehydrogenase; Validated	98.23
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	98.21
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	98.19
PRK12939	250	short chain dehydrogenase; Provisional	98.18
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	98.17
PLN03209	576	translocon at the inner envelope of chloroplast su	98.16
PRK06198	260	short chain dehydrogenase; Provisional	98.16
PRK05693	274	short chain dehydrogenase; Provisional	98.14
PRK07904	253	short chain dehydrogenase; Provisional	98.13
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	98.13
KOG1201|consensus	300		98.13
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	98.12
PRK08324	681	short chain dehydrogenase; Validated	98.11
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	98.09
PTZ00075	476	Adenosylhomocysteinase; Provisional	98.09
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.08
PRK07806	248	short chain dehydrogenase; Provisional	98.08
PRK08862	227	short chain dehydrogenase; Provisional	98.07
PRK05867	253	short chain dehydrogenase; Provisional	98.06
PRK07478	254	short chain dehydrogenase; Provisional	98.06
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	98.06
PRK08265	261	short chain dehydrogenase; Provisional	98.06
PRK05866	293	short chain dehydrogenase; Provisional	98.06
PRK07832	272	short chain dehydrogenase; Provisional	98.05
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	98.04
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	98.03
PRK12828	239	short chain dehydrogenase; Provisional	98.02
PRK06128	300	oxidoreductase; Provisional	98.02
PRK05872	296	short chain dehydrogenase; Provisional	97.98
PRK07814	263	short chain dehydrogenase; Provisional	97.98
PRK07831	262	short chain dehydrogenase; Provisional	97.97
PRK05876	275	short chain dehydrogenase; Provisional	97.97
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	97.96
PRK06949	258	short chain dehydrogenase; Provisional	97.94
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	97.94
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	97.93
PRK12747	252	short chain dehydrogenase; Provisional	97.93
PRK07523	255	gluconate 5-dehydrogenase; Provisional	97.92
PRK07791	286	short chain dehydrogenase; Provisional	97.92
PRK06172	253	short chain dehydrogenase; Provisional	97.92
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	97.92
PRK07576	264	short chain dehydrogenase; Provisional	97.92
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.91
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	97.91
PRK08589	272	short chain dehydrogenase; Validated	97.91
PRK09291	257	short chain dehydrogenase; Provisional	97.9
PRK07062	265	short chain dehydrogenase; Provisional	97.9
PRK06181	263	short chain dehydrogenase; Provisional	97.9
PRK07677	252	short chain dehydrogenase; Provisional	97.9
PRK06194	287	hypothetical protein; Provisional	97.9
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	97.9
PRK07890	258	short chain dehydrogenase; Provisional	97.89
PRK08340	259	glucose-1-dehydrogenase; Provisional	97.89
PRK06483	236	dihydromonapterin reductase; Provisional	97.89
PRK08303	305	short chain dehydrogenase; Provisional	97.88
PRK08085	254	gluconate 5-dehydrogenase; Provisional	97.88
PRK06484	520	short chain dehydrogenase; Validated	97.88
PRK05854	313	short chain dehydrogenase; Provisional	97.87
PRK06125	259	short chain dehydrogenase; Provisional	97.87
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	97.87
PRK08213	259	gluconate 5-dehydrogenase; Provisional	97.87
PRK07060	245	short chain dehydrogenase; Provisional	97.85
PRK07063	260	short chain dehydrogenase; Provisional	97.85
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	97.85
PRK07825	273	short chain dehydrogenase; Provisional	97.85
PRK09072	263	short chain dehydrogenase; Provisional	97.85
PRK12938	246	acetyacetyl-CoA reductase; Provisional	97.85
PRK06701	290	short chain dehydrogenase; Provisional	97.85
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.85
PLN02780	320	ketoreductase/ oxidoreductase	97.84
PRK07097	265	gluconate 5-dehydrogenase; Provisional	97.84
PRK06914	280	short chain dehydrogenase; Provisional	97.84
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	97.84
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.84
PRK08643	256	acetoin reductase; Validated	97.83
PRK07035	252	short chain dehydrogenase; Provisional	97.83
PRK06057	255	short chain dehydrogenase; Provisional	97.83
KOG0725|consensus	270		97.82
PRK06940	275	short chain dehydrogenase; Provisional	97.82
CHL00194	317	ycf39 Ycf39; Provisional	97.82
KOG4169|consensus	261		97.82
PRK08277	278	D-mannonate oxidoreductase; Provisional	97.81
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	97.81
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	97.81
PRK07985	294	oxidoreductase; Provisional	97.81
PRK08628	258	short chain dehydrogenase; Provisional	97.81
PRK07454	241	short chain dehydrogenase; Provisional	97.8
PRK08017	256	oxidoreductase; Provisional	97.8
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	97.78
PRK12937	245	short chain dehydrogenase; Provisional	97.78
PRK06720	169	hypothetical protein; Provisional	97.78
PRK07453	322	protochlorophyllide oxidoreductase; Validated	97.78
PRK06124	256	gluconate 5-dehydrogenase; Provisional	97.77
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	97.77
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	97.77
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	97.76
PRK06500	249	short chain dehydrogenase; Provisional	97.75
PRK06138	252	short chain dehydrogenase; Provisional	97.75
PRK08177	225	short chain dehydrogenase; Provisional	97.75
PRK07774	250	short chain dehydrogenase; Provisional	97.75
PRK10538	248	malonic semialdehyde reductase; Provisional	97.75
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.75
PRK06196	315	oxidoreductase; Provisional	97.74
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	97.74
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	97.74
COG2910	211	Putative NADH-flavin reductase [General function p	97.73
PRK09242	257	tropinone reductase; Provisional	97.73
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	97.73
PRK07326	237	short chain dehydrogenase; Provisional	97.73
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.73
PRK06114	254	short chain dehydrogenase; Provisional	97.73
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	97.72
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.72
PRK05650	270	short chain dehydrogenase; Provisional	97.72
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	97.71
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	97.69
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	97.69
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	97.69
PRK13656	398	trans-2-enoyl-CoA reductase; Provisional	97.68
PRK12829	264	short chain dehydrogenase; Provisional	97.68
PRK08278	273	short chain dehydrogenase; Provisional	97.68
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	97.68
PRK06197	306	short chain dehydrogenase; Provisional	97.67
PRK08703	239	short chain dehydrogenase; Provisional	97.67
PRK12743	256	oxidoreductase; Provisional	97.66
PRK06180	277	short chain dehydrogenase; Provisional	97.66
PRK05599	246	hypothetical protein; Provisional	97.66
PRK08267	260	short chain dehydrogenase; Provisional	97.66
PRK07024	257	short chain dehydrogenase; Provisional	97.66
PRK09186	256	flagellin modification protein A; Provisional	97.66
PF02670	129	DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re	97.66
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	97.65
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	97.65
PRK05875	276	short chain dehydrogenase; Provisional	97.64
PRK07775	274	short chain dehydrogenase; Provisional	97.63
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	97.63
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	97.63
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	97.63
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	97.62
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.62
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	97.62
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	97.61
PRK06841	255	short chain dehydrogenase; Provisional	97.6
PRK05717	255	oxidoreductase; Validated	97.6
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	97.59
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	97.57
KOG1502|consensus	327		97.57
KOG1200|consensus	256		97.56
PRK07102	243	short chain dehydrogenase; Provisional	97.56
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	97.56
PRK06484	520	short chain dehydrogenase; Validated	97.56
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	97.56
KOG1207|consensus	245		97.55
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	97.55
PRK12367	245	short chain dehydrogenase; Provisional	97.55
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	97.55
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	97.55
PRK12935	247	acetoacetyl-CoA reductase; Provisional	97.53
PLN02253	280	xanthoxin dehydrogenase	97.53
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	97.52
PRK07074	257	short chain dehydrogenase; Provisional	97.52
TIGR02415	254	23BDH acetoin reductases. One member of this famil	97.51
PRK06953	222	short chain dehydrogenase; Provisional	97.51
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	97.51
PRK08936	261	glucose-1-dehydrogenase; Provisional	97.5
PRK05855	582	short chain dehydrogenase; Validated	97.5
PRK07201	657	short chain dehydrogenase; Provisional	97.5
PRK08226	263	short chain dehydrogenase; Provisional	97.5
PRK08251	248	short chain dehydrogenase; Provisional	97.49
PLN02730	303	enoyl-[acyl-carrier-protein] reductase	97.49
PRK05884	223	short chain dehydrogenase; Provisional	97.49
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	97.48
PF11017	314	DUF2855: Protein of unknown function (DUF2855); In	97.47
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	97.47
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.47
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	97.46
KOG1610|consensus	322		97.46
PRK12746	254	short chain dehydrogenase; Provisional	97.45
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.44
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	97.44
PF13561	241	adh_short_C2: Enoyl-(Acyl carrier protein) reducta	97.43
PRK12744	257	short chain dehydrogenase; Provisional	97.43
PRK07067	257	sorbitol dehydrogenase; Provisional	97.43
TIGR01829	242	AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy	97.42
PRK06179	270	short chain dehydrogenase; Provisional	97.42
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.42
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	97.42
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	97.41
PRK06398	258	aldose dehydrogenase; Validated	97.41
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.4
PRK06123	248	short chain dehydrogenase; Provisional	97.39
PRK07577	234	short chain dehydrogenase; Provisional	97.39
PRK08264	238	short chain dehydrogenase; Validated	97.39
PRK09134	258	short chain dehydrogenase; Provisional	97.38
KOG1208|consensus	314		97.37
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.37
PRK06947	248	glucose-1-dehydrogenase; Provisional	97.36
PRK09135	249	pteridine reductase; Provisional	97.35
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	97.35
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.35
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.35
PRK09730	247	putative NAD(P)-binding oxidoreductase; Provisiona	97.33
KOG1014|consensus	312		97.33
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	97.32
PRK05447	385	1-deoxy-D-xylulose 5-phosphate reductoisomerase; P	97.31
KOG1199|consensus	260		97.3
PRK12827	249	short chain dehydrogenase; Provisional	97.3
PRK08263	275	short chain dehydrogenase; Provisional	97.3
PRK07856	252	short chain dehydrogenase; Provisional	97.29
PRK06482	276	short chain dehydrogenase; Provisional	97.28
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	97.28
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.27
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	97.27
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	97.26
PRK06719	157	precorrin-2 dehydrogenase; Validated	97.26
KOG1209|consensus	289		97.26
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.25
COG3288	356	PntA NAD/NADP transhydrogenase alpha subunit [Ener	97.25
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.24
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	97.22
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	97.22
PRK06523	260	short chain dehydrogenase; Provisional	97.21
PRK06101	240	short chain dehydrogenase; Provisional	97.2
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	97.19
PRK12748	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	97.16
PRK12548	289	shikimate 5-dehydrogenase; Provisional	97.15
KOG1210|consensus	331		97.14
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	97.13
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.12
TIGR02685	267	pter_reduc_Leis pteridine reductase. Pteridine red	97.12
PRK05562	223	precorrin-2 dehydrogenase; Provisional	97.11
PRK12859	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	97.1
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.06
PLN02240	352	UDP-glucose 4-epimerase	97.06
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	97.06
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	97.05
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	97.03
PRK07069	251	short chain dehydrogenase; Validated	97.02
TIGR01831	239	fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas	97.01
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	97.01
PLN00016	378	RNA-binding protein; Provisional	97.01
PRK11207	197	tellurite resistance protein TehB; Provisional	97.0
PLN02896	353	cinnamyl-alcohol dehydrogenase	96.98
PRK04148	134	hypothetical protein; Provisional	96.96
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	96.95
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	96.94
COG4122	219	Predicted O-methyltransferase [General function pr	96.94
PLN00015	308	protochlorophyllide reductase	96.94
COG0623	259	FabI Enoyl-[acyl-carrier-protein]	96.94
TIGR01830	239	3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re	96.93
PF08659	181	KR: KR domain; InterPro: IPR013968 This domain is	96.93
PRK10675	338	UDP-galactose-4-epimerase; Provisional	96.92
TIGR00438	188	rrmJ cell division protein FtsJ.	96.92
PRK08618	325	ornithine cyclodeaminase; Validated	96.92
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	96.91
PRK06300	299	enoyl-(acyl carrier protein) reductase; Provisiona	96.91
PRK08309	177	short chain dehydrogenase; Provisional	96.91
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	96.9
PRK07041	230	short chain dehydrogenase; Provisional	96.89
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	96.88
PRK07023	243	short chain dehydrogenase; Provisional	96.87
TIGR01500	256	sepiapter_red sepiapterin reductase. This model de	96.86
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.86
TIGR00715	256	precor6x_red precorrin-6x reductase. This enzyme w	96.86
PLN02214	342	cinnamoyl-CoA reductase	96.85
PRK08219	227	short chain dehydrogenase; Provisional	96.84
PRK12824	245	acetoacetyl-CoA reductase; Provisional	96.84
PRK14967	223	putative methyltransferase; Provisional	96.84
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	96.83
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	96.82
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	96.81
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	96.79
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	96.75
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	96.75
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	96.75
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	96.74
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	96.74
PRK07574	385	formate dehydrogenase; Provisional	96.74
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	96.74
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	96.72
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	96.72
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	96.71
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	96.7
PLN02244	340	tocopherol O-methyltransferase	96.7
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	96.7
PLN02653	340	GDP-mannose 4,6-dehydratase	96.69
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	96.68
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	96.67
PLN02928	347	oxidoreductase family protein	96.67
PLN02476	278	O-methyltransferase	96.66
PLN03139	386	formate dehydrogenase; Provisional	96.66
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	96.66
PLN02686	367	cinnamoyl-CoA reductase	96.66
KOG1203|consensus	411		96.64
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.64
PLN02427	386	UDP-apiose/xylose synthase	96.62
PLN02696	454	1-deoxy-D-xylulose-5-phosphate reductoisomerase	96.62
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.6
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	96.6
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	96.6
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	96.6
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	96.58
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	96.58
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.57
PRK08300	302	acetaldehyde dehydrogenase; Validated	96.57
COG1028	251	FabG Dehydrogenases with different specificities (	96.56
PRK13243	333	glyoxylate reductase; Reviewed	96.55
PRK07402	196	precorrin-6B methylase; Provisional	96.55
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	96.55
PRK14982	340	acyl-ACP reductase; Provisional	96.55
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	96.54
PLN02695	370	GDP-D-mannose-3',5'-epimerase	96.53
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	96.53
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	96.53
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	96.52
PRK07578	199	short chain dehydrogenase; Provisional	96.52
PLN02650	351	dihydroflavonol-4-reductase	96.51
PRK06924	251	short chain dehydrogenase; Provisional	96.51
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	96.51
TIGR02813	2582	omega_3_PfaA polyketide-type polyunsaturated fatty	96.51
PRK08655	437	prephenate dehydrogenase; Provisional	96.5
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	96.5
COG0031	300	CysK Cysteine synthase [Amino acid transport and m	96.49
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	96.48
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	96.48
PRK06849	389	hypothetical protein; Provisional	96.48
PLN00198	338	anthocyanidin reductase; Provisional	96.46
PRK06550	235	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.46
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	96.45
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	96.45
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	96.44
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	96.43
PLN02589	247	caffeoyl-CoA O-methyltransferase	96.41
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	96.41
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.41
TIGR00243	389	Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomeras	96.39
KOG1252|consensus	362		96.39
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	96.38
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.38
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	96.36
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	96.35
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	96.33
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.31
PRK14968	188	putative methyltransferase; Provisional	96.3
PLN02256	304	arogenate dehydrogenase	96.29
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.26
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	96.26
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	96.26
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.25
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	96.24
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	96.23
PRK09620	229	hypothetical protein; Provisional	96.23
PRK07340	304	ornithine cyclodeaminase; Validated	96.23

>KOG1197|consensus

Probab=99.97  E-value=1.7e-30  Score=184.87  Aligned_cols=192  Identities=19%  Similarity=0.211  Sum_probs=166.7

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeCh--hHHHh-HHHhhCC
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE--EELRN-ISRDASI   78 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~--~~~~~-~~~~~~~   78 (202)
                      |++..++++|++||++.+.|++|++++|+++..|+++|+++++.+    +++.+++.|+++.+++  +|+.+ +.+.+++
T Consensus       138 l~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~asTae----K~~~akenG~~h~I~y~~eD~v~~V~kiTng  213 (336)
T KOG1197|consen  138 LFEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATASTAE----KHEIAKENGAEHPIDYSTEDYVDEVKKITNG  213 (336)
T ss_pred             HHHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEeccHH----HHHHHHhcCCcceeeccchhHHHHHHhccCC
Confidence            456778999999999999999999999999999999999999987    7999999999999974  78888 9999999


Q ss_pred             CCCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHH
Q psy2961          79 PKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTE  158 (202)
Q Consensus        79 ~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  158 (202)
                      .|+|+++|++|.+.+...+.+|++.|.+|.+|...+...+++...+.-+++.+..-.+..|   ...+........++..
T Consensus       214 KGVd~vyDsvG~dt~~~sl~~Lk~~G~mVSfG~asgl~~p~~l~~ls~k~l~lvrpsl~gY---i~g~~el~~~v~rl~a  290 (336)
T KOG1197|consen  214 KGVDAVYDSVGKDTFAKSLAALKPMGKMVSFGNASGLIDPIPLNQLSPKALQLVRPSLLGY---IDGEVELVSYVARLFA  290 (336)
T ss_pred             CCceeeeccccchhhHHHHHHhccCceEEEeccccCCCCCeehhhcChhhhhhccHhhhcc---cCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999988877667777666666665544332222   2333666778889999


Q ss_pred             HHHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEeecC
Q psy2961         159 MMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFRQ  202 (202)
Q Consensus       159 ~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~~~  202 (202)
                      ++-+|.+++.+.++||++++.+|+..++  ++.+.||+++...|
T Consensus       291 lvnsg~lk~~I~~~ypls~vadA~~die--srktvGkvlLlp~~  332 (336)
T KOG1197|consen  291 LVNSGHLKIHIDHVYPLSKVADAHADIE--SRKTVGKVLLLPGP  332 (336)
T ss_pred             HhhcCccceeeeeecchHHHHHHHHHHH--hhhccceEEEeCCc
Confidence            9999999999999999999999999999  89999999997753

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=99.97  E-value=2.1e-29  Score=193.19  Aligned_cols=189  Identities=25%  Similarity=0.385  Sum_probs=158.9

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeCh--hHHHh-HHHhhCC
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE--EELRN-ISRDASI   78 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~--~~~~~-~~~~~~~   78 (202)
                      |++..++++|++|||+||+|++|.+++|+||++|+.+++++++++    +.+.++++|++++++|  +++.+ +++.+.+
T Consensus       134 l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~----k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g  209 (326)
T COG0604         134 LFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSE----KLELLKELGADHVINYREEDFVEQVRELTGG  209 (326)
T ss_pred             HHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHH----HHHHHHhcCCCEEEcCCcccHHHHHHHHcCC
Confidence            556778999999999999999999999999999988888887775    4669999999999986  45888 9999988


Q ss_pred             CCCeEEEecCCCchHHHHHHhcccCcEEEEEeccCC-CCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHH
Q psy2961          79 PKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSR-EPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELT  157 (202)
Q Consensus        79 ~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  157 (202)
                      .++|+|+|++|++.+...+.+|+++|+++.+|...+ ....++...++.+.+...++.....   .  ++...+.+.++.
T Consensus       210 ~gvDvv~D~vG~~~~~~~l~~l~~~G~lv~ig~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~---~--~~~~~~~~~~l~  284 (326)
T COG0604         210 KGVDVVLDTVGGDTFAASLAALAPGGRLVSIGALSGGPPVPLNLLPLLGKRLTLRGVTLGSR---D--PEALAEALAELF  284 (326)
T ss_pred             CCceEEEECCCHHHHHHHHHHhccCCEEEEEecCCCCCccccCHHHHhhccEEEEEecceec---c--hHHHHHHHHHHH
Confidence            899999999999999999999999999999998773 4445555666677788887775543   1  156688899999


Q ss_pred             HHHHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         158 EMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       158 ~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      +++.+|.+++.++.+||+++..++...... .++..||+|+++
T Consensus       285 ~~~~~g~l~~~i~~~~~l~e~~~a~a~~~~-~~~~~GKvvl~~  326 (326)
T COG0604         285 DLLASGKLKPVIDRVYPLAEAPAAAAHLLL-ERRTTGKVVLKV  326 (326)
T ss_pred             HHHHcCCCcceeccEechhhhHHHHHHHHc-ccCCcceEEEeC
Confidence            999999999999999999998777776652 247889999974

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=99.96  E-value=3.4e-28  Score=189.14  Aligned_cols=187  Identities=21%  Similarity=0.256  Sum_probs=153.4

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHH-hcCCceEeChh---HHHh-HHHhh
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK-SLGADYVFTEE---ELRN-ISRDA   76 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~-~lg~~~v~~~~---~~~~-~~~~~   76 (202)
                      |.+.+++++|++|||+|++|++|++++|+|+.+|++|++++++++    +.+.++ ++|++.++++.   ++.+ +.+.+
T Consensus       150 l~~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~----k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~  225 (348)
T PLN03154        150 FYEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQ----KVDLLKNKLGFDEAFNYKEEPDLDAALKRYF  225 (348)
T ss_pred             HHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHH----HHHHHHHhcCCCEEEECCCcccHHHHHHHHC
Confidence            345678899999999999889999999999999999988887765    578886 79999999763   4556 76666


Q ss_pred             CCCCCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcC-----CCcccccccCeeEEEEechhHhhhcccHHHHHH
Q psy2961          77 SIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQ-----IPTSAFIFKDITLRGHWMTRWQKENKESAERKS  151 (202)
Q Consensus        77 ~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  151 (202)
                      + .++|++|||+|+..+...+++++++|+++.+|........     ++...++.+++++.|++...|..      ...+
T Consensus       226 ~-~gvD~v~d~vG~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~------~~~~  298 (348)
T PLN03154        226 P-EGIDIYFDNVGGDMLDAALLNMKIHGRIAVCGMVSLNSLSASQGIHNLYNLISKRIRMQGFLQSDYLH------LFPQ  298 (348)
T ss_pred             C-CCcEEEEECCCHHHHHHHHHHhccCCEEEEECccccCCCCCCCCcccHHHHhhccceEEEEEHHHHHH------HHHH
Confidence            4 5899999999988777799999999999999965433211     23345677899999988655421      2346


Q ss_pred             HHHHHHHHHHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEeec
Q psy2961         152 MMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  201 (202)
Q Consensus       152 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~~  201 (202)
                      .++++.+++++|++++.+..+|+|+++++||+.+.  +++..||+||++.
T Consensus       299 ~~~~~~~l~~~G~l~~~~~~~~~L~~~~~A~~~l~--~g~~~GKvVl~~~  346 (348)
T PLN03154        299 FLENVSRYYKQGKIVYIEDMSEGLESAPAALVGLF--SGKNVGKQVIRVA  346 (348)
T ss_pred             HHHHHHHHHHCCCccCceecccCHHHHHHHHHHHH--cCCCCceEEEEec
Confidence            78999999999999998888999999999999999  8888999999875

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=99.96  E-value=4e-28  Score=182.91  Aligned_cols=174  Identities=23%  Similarity=0.336  Sum_probs=150.9

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChh--HHHh-HHHhhCCCCC
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRDASIPKP   81 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~--~~~~-~~~~~~~~~~   81 (202)
                      ..+++||++|+|+|+| ++|++++|+|+.+|++|++++++++    +++.++++|++++++..  +..+ +++     .+
T Consensus       161 ~~~~~pG~~V~I~G~G-GlGh~avQ~Aka~ga~Via~~~~~~----K~e~a~~lGAd~~i~~~~~~~~~~~~~-----~~  230 (339)
T COG1064         161 KANVKPGKWVAVVGAG-GLGHMAVQYAKAMGAEVIAITRSEE----KLELAKKLGADHVINSSDSDALEAVKE-----IA  230 (339)
T ss_pred             hcCCCCCCEEEEECCc-HHHHHHHHHHHHcCCeEEEEeCChH----HHHHHHHhCCcEEEEcCCchhhHHhHh-----hC
Confidence            4789999999999999 9999999999999999999999987    68999999999999743  3333 333     28


Q ss_pred             eEEEecCCCchHHHHHHhcccCcEEEEEeccC-CCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHH
Q psy2961          82 KLALNCVGGNSATNLLRTLVSKGVMVTYGGMS-REPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMM  160 (202)
Q Consensus        82 d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (202)
                      |+++|+++...+..+++.|+++|+++.+|... .....++...++.+++++.|+...+           +.++++++++.
T Consensus       231 d~ii~tv~~~~~~~~l~~l~~~G~~v~vG~~~~~~~~~~~~~~li~~~~~i~GS~~g~-----------~~d~~e~l~f~  299 (339)
T COG1064         231 DAIIDTVGPATLEPSLKALRRGGTLVLVGLPGGGPIPLLPAFLLILKEISIVGSLVGT-----------RADLEEALDFA  299 (339)
T ss_pred             cEEEECCChhhHHHHHHHHhcCCEEEEECCCCCcccCCCCHHHhhhcCeEEEEEecCC-----------HHHHHHHHHHH
Confidence            99999999445566999999999999999764 3444567777889999999999765           56699999999


Q ss_pred             HcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEeec
Q psy2961         161 RTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  201 (202)
Q Consensus       161 ~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~~  201 (202)
                      .+|+++|.+.+.++++++++||+.|.  +++..|++||++.
T Consensus       300 ~~g~Ikp~i~e~~~l~~in~A~~~m~--~g~v~gR~Vi~~~  338 (339)
T COG1064         300 AEGKIKPEILETIPLDEINEAYERME--KGKVRGRAVIDMS  338 (339)
T ss_pred             HhCCceeeEEeeECHHHHHHHHHHHH--cCCeeeEEEecCC
Confidence            99999999878999999999999999  9999999999875

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=99.96  E-value=9.4e-28  Score=175.08  Aligned_cols=188  Identities=20%  Similarity=0.257  Sum_probs=162.4

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHh-cCCceEeCh--hHHHh-HHHhhC
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS-LGADYVFTE--EELRN-ISRDAS   77 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~-lg~~~v~~~--~~~~~-~~~~~~   77 (202)
                      |.+++++++|++|+|.+|+|++|..+.|+||..|++|+.++++++    |.+++.+ +|.+.++||  +++.+ +.+.+.
T Consensus       142 Ll~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg~e----K~~~l~~~lGfD~~idyk~~d~~~~L~~a~P  217 (340)
T COG2130         142 LLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGAE----KCDFLTEELGFDAGIDYKAEDFAQALKEACP  217 (340)
T ss_pred             HHHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecCCHH----HHHHHHHhcCCceeeecCcccHHHHHHHHCC
Confidence            567899999999999999999999999999999999999999987    6899977 999999997  46777 888876


Q ss_pred             CCCCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcC-C-----CcccccccCeeEEEEechhHhhhcccHHHHHH
Q psy2961          78 IPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQ-I-----PTSAFIFKDITLRGHWMTRWQKENKESAERKS  151 (202)
Q Consensus        78 ~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~-~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  151 (202)
                       .++|+.||++|++.+...+..|+..+|+++||....-+.+ .     ....++.+.+++.|+.......     ....+
T Consensus       218 -~GIDvyfeNVGg~v~DAv~~~ln~~aRi~~CG~IS~YN~~~~~~gp~~l~~l~~kr~~v~Gfiv~~~~~-----~~~~e  291 (340)
T COG2130         218 -KGIDVYFENVGGEVLDAVLPLLNLFARIPVCGAISQYNAPELPPGPRRLPLLMAKRLRVQGFIVASDYD-----QRFPE  291 (340)
T ss_pred             -CCeEEEEEcCCchHHHHHHHhhccccceeeeeehhhcCCCCCCCCcchhhHHHhhhheeEEEEechhhh-----hhhHH
Confidence             7999999999999999999999999999999965543222 1     2345667789999998743322     33468


Q ss_pred             HHHHHHHHHHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEeec
Q psy2961         152 MMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  201 (202)
Q Consensus       152 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~~  201 (202)
                      .++++.+|+.+|+|+...+.+-.+|++++||..+.  +++.+||+|+++.
T Consensus       292 ~~~~l~~wv~~GKi~~~eti~dGlEnaP~Af~gLl--~G~N~GK~vvKv~  339 (340)
T COG2130         292 ALRELGGWVKEGKIQYRETIVDGLENAPEAFIGLL--SGKNFGKLVVKVA  339 (340)
T ss_pred             HHHHHHHHHHcCceeeEeeehhhhhccHHHHHHHh--cCCccceEEEEec
Confidence            89999999999999998888888999999999999  9999999999985

>KOG0025|consensus

Probab=99.95  E-value=8.4e-27  Score=168.83  Aligned_cols=200  Identities=54%  Similarity=0.843  Sum_probs=174.8

Q ss_pred             CcccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh--HHHh-hC
Q psy2961           1 MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN--ISRD-AS   77 (202)
Q Consensus         1 ~l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~--~~~~-~~   77 (202)
                      ||.+..++++||+|+-.|+.|++|++.+|+|+++|.+-|.++++...++|..+.++.+|+++|+.++++..  .... ..
T Consensus       151 mL~dfv~L~~GD~vIQNganS~VG~~ViQlaka~GiktinvVRdR~~ieel~~~Lk~lGA~~ViTeeel~~~~~~k~~~~  230 (354)
T KOG0025|consen  151 MLKDFVQLNKGDSVIQNGANSGVGQAVIQLAKALGIKTINVVRDRPNIEELKKQLKSLGATEVITEEELRDRKMKKFKGD  230 (354)
T ss_pred             HHHHHHhcCCCCeeeecCcccHHHHHHHHHHHHhCcceEEEeecCccHHHHHHHHHHcCCceEecHHHhcchhhhhhhcc
Confidence            46777889999999999999999999999999999999999999999999999999999999998776654  3332 33


Q ss_pred             CCCCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHH
Q psy2961          78 IPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELT  157 (202)
Q Consensus        78 ~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  157 (202)
                      ...+.+.++|+|+.....+.+.|..||.++.+|++...+...+...+++++++++|+|+..|...+..++...+.+.++.
T Consensus       231 ~~~prLalNcVGGksa~~iar~L~~GgtmvTYGGMSkqPv~~~ts~lIFKdl~~rGfWvt~W~~~~~~pe~~~~~i~~~~  310 (354)
T KOG0025|consen  231 NPRPRLALNCVGGKSATEIARYLERGGTMVTYGGMSKQPVTVPTSLLIFKDLKLRGFWVTRWKKEHKSPEERKEMIDELC  310 (354)
T ss_pred             CCCceEEEeccCchhHHHHHHHHhcCceEEEecCccCCCcccccchheeccceeeeeeeeehhhccCCcHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999989999999999999999999999988866688889999999


Q ss_pred             HHHHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEeec
Q psy2961         158 EMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  201 (202)
Q Consensus       158 ~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~~  201 (202)
                      +++..|+|..+.....+|++...|++.... .-...+|-++.++
T Consensus       311 ~l~~~G~i~~~~~e~v~L~~~~tald~~L~-~~~~~~Kq~i~~e  353 (354)
T KOG0025|consen  311 DLYRRGKLKAPNCEKVPLADHKTALDAALS-KFGKSGKQIIVLE  353 (354)
T ss_pred             HHHHcCeeccccceeeechhhhHHHHHHHH-HhccCCceEEEec
Confidence            999999999988889999999888887762 2233356666653

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=99.95  E-value=5.6e-26  Score=175.37  Aligned_cols=186  Identities=24%  Similarity=0.395  Sum_probs=148.3

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChh---HHHh-HHHhhC
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE---ELRN-ISRDAS   77 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~---~~~~-~~~~~~   77 (202)
                      |.+.+++++|++|||+|++|++|++++|+|+..|+++++++++++    +.+.++++|++.++++.   ++.+ +.... 
T Consensus       130 l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~----~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~-  204 (325)
T TIGR02825       130 LLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDE----KVAYLKKLGFDVAFNYKTVKSLEETLKKAS-  204 (325)
T ss_pred             HHHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHcCCCEEEeccccccHHHHHHHhC-
Confidence            346678999999999999889999999999999999998887765    68899999999999754   3444 55544 


Q ss_pred             CCCCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCC----CcC--CCcccccccCeeEEEEechhHhhhcccHHHHHH
Q psy2961          78 IPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSRE----PVQ--IPTSAFIFKDITLRGHWMTRWQKENKESAERKS  151 (202)
Q Consensus        78 ~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~----~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  151 (202)
                      +.++|++||++|++.+...+++++++|+++.+|.....    ...  .....++.+++++.++....|..     ....+
T Consensus       205 ~~gvdvv~d~~G~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~  279 (325)
T TIGR02825       205 PDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGAISTYNRTGPLPPGPPPEIVIYQELRMEGFIVNRWQG-----EVRQK  279 (325)
T ss_pred             CCCeEEEEECCCHHHHHHHHHHhCcCcEEEEecchhhcccCCCCCCCcchHHHhhhcceEeEEEehhhhh-----hhhHH
Confidence            46899999999998887799999999999999854321    111  11233456788888876544322     23356


Q ss_pred             HHHHHHHHHHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEe
Q psy2961         152 MMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYID  199 (202)
Q Consensus       152 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~  199 (202)
                      .++++++++.+|++++.+..+|+++++++||+.+.  +++..||+|++
T Consensus       280 ~~~~~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~--~~~~~gkvVv~  325 (325)
T TIGR02825       280 ALKELLKWVLEGKIQYKEYVIEGFENMPAAFMGML--KGENLGKTIVK  325 (325)
T ss_pred             HHHHHHHHHHCCCcccceeccccHHHHHHHHHHHh--cCCCCCeEEeC
Confidence            78999999999999988778899999999999999  88888999974

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=99.94  E-value=9.9e-26  Score=174.88  Aligned_cols=186  Identities=20%  Similarity=0.268  Sum_probs=149.3

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHh-cCCceEeCh---hHHHh-HHHhh
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS-LGADYVFTE---EELRN-ISRDA   76 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~-lg~~~v~~~---~~~~~-~~~~~   76 (202)
                      |.+.+++++|++|||+|++|++|++++|+|+.+|+++++++++++    +.+.+++ +|+++++++   .++.+ +.+.+
T Consensus       143 l~~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~----~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~  218 (338)
T cd08295         143 FYEVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDE----KVDLLKNKLGFDDAFNYKEEPDLDAALKRYF  218 (338)
T ss_pred             HHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHhcCCceeEEcCCcccHHHHHHHhC
Confidence            345678999999999999889999999999999999999887765    6888888 999998874   25666 76666


Q ss_pred             CCCCCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCc-----CCCcccccccCeeEEEEechhHhhhcccHHHHHH
Q psy2961          77 SIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPV-----QIPTSAFIFKDITLRGHWMTRWQKENKESAERKS  151 (202)
Q Consensus        77 ~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  151 (202)
                      + .++|++||++|+..+...+++++++|+++.+|.......     ..+...++.+++++.++....+.      ....+
T Consensus       219 ~-~gvd~v~d~~g~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~------~~~~~  291 (338)
T cd08295         219 P-NGIDIYFDNVGGKMLDAVLLNMNLHGRIAACGMISQYNLEWPEGVRNLLNIIYKRVKIQGFLVGDYL------HRYPE  291 (338)
T ss_pred             C-CCcEEEEECCCHHHHHHHHHHhccCcEEEEecccccCCCCCCCCccCHHHHhhccceeeEEEehhhH------HHHHH
Confidence            4 689999999998777779999999999999986443211     12234456677888886654332      22356


Q ss_pred             HHHHHHHHHHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         152 MMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       152 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      .++++++++.+|++++.+...|+++++++|++.+.  +++..||+|+++
T Consensus       292 ~~~~~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~--~~~~~GkvVl~~  338 (338)
T cd08295         292 FLEEMSGYIKEGKLKYVEDIADGLESAPEAFVGLF--TGSNIGKQVVKV  338 (338)
T ss_pred             HHHHHHHHHHCCCeEceeecccCHHHHHHHHHHHh--cCCCCceEEEEC
Confidence            78899999999999987777899999999999999  888899999874

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>KOG1198|consensus

Probab=99.94  E-value=5.6e-26  Score=174.56  Aligned_cols=186  Identities=21%  Similarity=0.273  Sum_probs=137.9

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhH--HHh-HHHhhCCCCCeE
Q psy2961           7 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE--LRN-ISRDASIPKPKL   83 (202)
Q Consensus         7 ~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~--~~~-~~~~~~~~~~d~   83 (202)
                      ++++|++|||+|++|++|++++|+|++.|+.+++++++.+    ..++++++|+++++||++  ..+ +++.+ +.++|+
T Consensus       154 ~~~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e----~~~l~k~lGAd~vvdy~~~~~~e~~kk~~-~~~~Dv  228 (347)
T KOG1198|consen  154 KLSKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKE----KLELVKKLGADEVVDYKDENVVELIKKYT-GKGVDV  228 (347)
T ss_pred             ccCCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccc----hHHHHHHcCCcEeecCCCHHHHHHHHhhc-CCCccE
Confidence            8999999999999999999999999999955555555555    489999999999999754  666 77777 789999


Q ss_pred             EEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCccccc--ccCeeEE--EEechhHhhhcccHHHHHHHHHHHHHH
Q psy2961          84 ALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFI--FKDITLR--GHWMTRWQKENKESAERKSMMNELTEM  159 (202)
Q Consensus        84 vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~--~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (202)
                      ||||+|+........++..+|+...++.............+.  .+.+.+.  +.....+....  .....+.++.+.++
T Consensus       229 VlD~vg~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~l~~~  306 (347)
T KOG1198|consen  229 VLDCVGGSTLTKSLSCLLKGGGGAYIGLVGDELANYKLDDLWQSANGIKLYSLGLKGVNYRWLY--FVPSAEYLKALVEL  306 (347)
T ss_pred             EEECCCCCccccchhhhccCCceEEEEeccccccccccccchhhhhhhhheeeeeeccceeeee--ecCCHHHHHHHHHH
Confidence            999999998777888888888766665444332222211111  1111111  11111111100  02236779999999


Q ss_pred             HHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEeec
Q psy2961         160 MRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  201 (202)
Q Consensus       160 ~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~~  201 (202)
                      ++.|+++|.+.+.||++++.+||+.+.  +++..||+++.++
T Consensus       307 ie~gkikp~i~~~~p~~~~~ea~~~~~--~~~~~GK~vl~~~  346 (347)
T KOG1198|consen  307 IEKGKIKPVIDSVYPFSQAKEAFEKLE--KSHATGKVVLEKD  346 (347)
T ss_pred             HHcCcccCCcceeeeHHHHHHHHHHHh--hcCCcceEEEEec
Confidence            999999999999999999999999999  8888999999875

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=99.94  E-value=2.8e-25  Score=171.63  Aligned_cols=186  Identities=26%  Similarity=0.391  Sum_probs=149.5

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChh--HHHh-HHHhhCC
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRDASI   78 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~--~~~~-~~~~~~~   78 (202)
                      |.+.+++++|++|||+|++|++|++++|+|+..|+++++++++++    +.+.++++|+++++++.  ++.+ +++.++ 
T Consensus       135 l~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~----~~~~l~~~Ga~~vi~~~~~~~~~~v~~~~~-  209 (329)
T cd08294         135 LLEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDD----KVAWLKELGFDAVFNYKTVSLEEALKEAAP-  209 (329)
T ss_pred             HHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHcCCCEEEeCCCccHHHHHHHHCC-
Confidence            345678999999999999889999999999999999998887775    68999999999999753  5556 766665 


Q ss_pred             CCCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCc------CCCcccccccCeeEEEEechhHhhhcccHHHHHHH
Q psy2961          79 PKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPV------QIPTSAFIFKDITLRGHWMTRWQKENKESAERKSM  152 (202)
Q Consensus        79 ~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  152 (202)
                      .++|++||++|++.....+++++++|+++.+|.......      ......++.+++++.++....+.      ....+.
T Consensus       210 ~gvd~vld~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~~~  283 (329)
T cd08294         210 DGIDCYFDNVGGEFSSTVLSHMNDFGRVAVCGSISTYNDKEPKKGPYVQETIIFKQLKMEGFIVYRWQ------DRWPEA  283 (329)
T ss_pred             CCcEEEEECCCHHHHHHHHHhhccCCEEEEEcchhccCCCCCCcCcccHHHHhhhcceEEEEEhhhhH------HHHHHH
Confidence            689999999999777779999999999999985432111      11122355678888887654431      234567


Q ss_pred             HHHHHHHHHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         153 MNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       153 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      ++++++++++|++++.+..+++++++++||+.+.  +++..||+|+++
T Consensus       284 ~~~~~~l~~~g~i~~~~~~~~~l~~~~~A~~~~~--~~~~~gkvvv~~  329 (329)
T cd08294         284 LKQLLKWIKEGKLKYREHVTEGFENMPQAFIGML--KGENTGKAIVKV  329 (329)
T ss_pred             HHHHHHHHHCCCCcCCcccccCHHHHHHHHHHHH--cCCCCCeEEEeC
Confidence            8899999999999987667899999999999999  888889999864

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=99.94  E-value=5.7e-25  Score=172.58  Aligned_cols=180  Identities=16%  Similarity=0.204  Sum_probs=144.5

Q ss_pred             ccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcccHHHHHHHHHhcCCceEeCh--hHHHh-HHHhhCC
Q psy2961           3 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTE--EELRN-ISRDASI   78 (202)
Q Consensus         3 ~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~--~~~~~-~~~~~~~   78 (202)
                      .+.+++++|++|+|+|++ ++|++++|+|+..|+ +|+++..+++    +++.++++|++.++++  .++.+ +++.+.+
T Consensus       184 ~~~~~i~~g~~VlV~G~G-~vG~~a~~lak~~G~~~Vi~~~~~~~----r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~  258 (371)
T cd08281         184 VNTAGVRPGQSVAVVGLG-GVGLSALLGAVAAGASQVVAVDLNED----KLALARELGATATVNAGDPNAVEQVRELTGG  258 (371)
T ss_pred             HhccCCCCCCEEEEECCC-HHHHHHHHHHHHcCCCcEEEEcCCHH----HHHHHHHcCCceEeCCCchhHHHHHHHHhCC
Confidence            356778999999999975 999999999999999 5777766654    6889999999999875  34556 7777665


Q ss_pred             CCCeEEEecCCCch-HHHHHHhcccCcEEEEEeccCC-CCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHH
Q psy2961          79 PKPKLALNCVGGNS-ATNLLRTLVSKGVMVTYGGMSR-EPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNEL  156 (202)
Q Consensus        79 ~~~d~vid~~g~~~-~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  156 (202)
                       ++|++|||+|.+. ....+++++++|+++.+|.... ....++...++.+++++.|++...+..        .+.+.++
T Consensus       259 -g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~--------~~~~~~~  329 (371)
T cd08281         259 -GVDYAFEMAGSVPALETAYEITRRGGTTVTAGLPDPEARLSVPALSLVAEERTLKGSYMGSCVP--------RRDIPRY  329 (371)
T ss_pred             -CCCEEEECCCChHHHHHHHHHHhcCCEEEEEccCCCCceeeecHHHHhhcCCEEEEEecCCCCh--------HHHHHHH
Confidence             8999999999764 4458999999999999996543 233556666788999999988665421        3457888


Q ss_pred             HHHHHcCCCCC--CcceeechhhHHHHHHHHhhhcCCCCceEEE
Q psy2961         157 TEMMRTGKLAA--PAHKFVTLKNFQEALMNTMSIQGKSGVKYYI  198 (202)
Q Consensus       157 ~~~~~~g~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~  198 (202)
                      ++++.+|++++  .++++|+++++++||+.+.  +++..+|+|+
T Consensus       330 ~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~--~~~~~~~vi~  371 (371)
T cd08281         330 LALYLSGRLPVDKLLTHRLPLDEINEGFDRLA--AGEAVRQVIL  371 (371)
T ss_pred             HHHHHcCCCCchhheeeeecHHHHHHHHHHHh--CCCceeeeeC
Confidence            99999999986  3789999999999999999  8888877764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=99.93  E-value=1.8e-24  Score=166.89  Aligned_cols=178  Identities=22%  Similarity=0.381  Sum_probs=145.4

Q ss_pred             CCCEEEEe-CCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeCh--hHHHh-HHHhhCCCCCeEEE
Q psy2961          10 PGDVVIQN-GANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE--EELRN-ISRDASIPKPKLAL   85 (202)
Q Consensus        10 ~g~~VlI~-g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~--~~~~~-~~~~~~~~~~d~vi   85 (202)
                      ++++++|+ +++|++|++++|+|+..|+++++++++++    +.+.++++|+++++++  .++.+ +++.+.+.++|++|
T Consensus       142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~----~~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~~d~vi  217 (324)
T cd08291         142 EGAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKE----QVDLLKKIGAEYVLNSSDPDFLEDLKELIAKLNATIFF  217 (324)
T ss_pred             CCCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHcCCcEEEECCCccHHHHHHHHhCCCCCcEEE
Confidence            45666665 78789999999999999999998887765    6888999999999875  35666 77777777899999


Q ss_pred             ecCCCchHHHHHHhcccCcEEEEEeccCCCCc-CCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHHHcCC
Q psy2961          86 NCVGGNSATNLLRTLVSKGVMVTYGGMSREPV-QIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGK  164 (202)
Q Consensus        86 d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  164 (202)
                      |++|+......+++++++|+++.+|....... .++...++.+++++.+++...+....     ..+.++++.++++ +.
T Consensus       218 d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~  291 (324)
T cd08291         218 DAVGGGLTGQILLAMPYGSTLYVYGYLSGKLDEPIDPVDLIFKNKSIEGFWLTTWLQKL-----GPEVVKKLKKLVK-TE  291 (324)
T ss_pred             ECCCcHHHHHHHHhhCCCCEEEEEEecCCCCcccCCHHHHhhcCcEEEEEEHHHhhccc-----CHHHHHHHHHHHh-Cc
Confidence            99999888788999999999999996544332 24455667889999999877654321     2456888888888 99


Q ss_pred             CCCCcceeechhhHHHHHHHHhhhcCCCCceEEEe
Q psy2961         165 LAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYID  199 (202)
Q Consensus       165 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~  199 (202)
                      +++.++++|+++++++||+.+.  ++...||+++.
T Consensus       292 ~~~~i~~~~~l~~~~~a~~~~~--~~~~~Gkvv~~  324 (324)
T cd08291         292 LKTTFASRYPLALTLEAIAFYS--KNMSTGKKLLI  324 (324)
T ss_pred             cccceeeEEcHHHHHHHHHHHH--hCCCCCeEEeC
Confidence            9998999999999999999999  88888999974

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=99.93  E-value=1.5e-24  Score=168.60  Aligned_cols=173  Identities=19%  Similarity=0.262  Sum_probs=137.0

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCc-EEEEecCcccHHHHHHHHHhcCCceEeChhH--HHhHHHhhCCCCCe
Q psy2961           6 NSLSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLGADYVFTEEE--LRNISRDASIPKPK   82 (202)
Q Consensus         6 ~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~--~~~~~~~~~~~~~d   82 (202)
                      ....+|++|+|+|+ |++|++++|+|+.+|++ ++++.++++    +++.++++|++.++++.+  +.++.+.  .+++|
T Consensus       165 ~~~~~g~~VlV~G~-G~vG~~aiqlak~~G~~~Vi~~~~~~~----~~~~a~~lGa~~vi~~~~~~~~~~~~~--~g~~D  237 (343)
T PRK09880        165 AGDLQGKRVFVSGV-GPIGCLIVAAVKTLGAAEIVCADVSPR----SLSLAREMGADKLVNPQNDDLDHYKAE--KGYFD  237 (343)
T ss_pred             cCCCCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEEeCCHH----HHHHHHHcCCcEEecCCcccHHHHhcc--CCCCC
Confidence            34568999999997 59999999999999995 666666654    789999999999997543  3332221  23699


Q ss_pred             EEEecCCCch-HHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHHH
Q psy2961          83 LALNCVGGNS-ATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMR  161 (202)
Q Consensus        83 ~vid~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (202)
                      ++|||+|++. ...++++++++|+++.+|... ....++...++.+++++.++...            .+.+++++++++
T Consensus       238 ~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~-~~~~~~~~~~~~k~~~i~g~~~~------------~~~~~~~~~l~~  304 (343)
T PRK09880        238 VSFEVSGHPSSINTCLEVTRAKGVMVQVGMGG-APPEFPMMTLIVKEISLKGSFRF------------TEEFNTAVSWLA  304 (343)
T ss_pred             EEEECCCCHHHHHHHHHHhhcCCEEEEEccCC-CCCccCHHHHHhCCcEEEEEeec------------cccHHHHHHHHH
Confidence            9999999865 456899999999999999533 33456666677889999987632            234889999999


Q ss_pred             cCCCCC--CcceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         162 TGKLAA--PAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       162 ~g~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      +|++++  .++++|+++++++||+.+.  ++...||+++.+
T Consensus       305 ~g~i~~~~~i~~~~~l~~~~~A~~~~~--~~~~~gKvvl~~  343 (343)
T PRK09880        305 NGVINPLPLLSAEYPFTDLEEALIFAG--DKTQAAKVQLVF  343 (343)
T ss_pred             cCCCCchhheEEEEEHHHHHHHHHHHh--cCCCceEEEEeC
Confidence            999986  4679999999999999998  777789999874

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=99.93  E-value=1.9e-24  Score=168.95  Aligned_cols=181  Identities=15%  Similarity=0.191  Sum_probs=142.8

Q ss_pred             ccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCc-EEEEecCcccHHHHHHHHHhcCCceEeChh--HHHh-HHHhhCC
Q psy2961           3 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRDASI   78 (202)
Q Consensus         3 ~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~--~~~~-~~~~~~~   78 (202)
                      .+.+++++|++|||+|+ |++|++++|+|+..|++ |+++.++++    +++.++++|++.++++.  ++.+ +.+.+++
T Consensus       169 ~~~~~~~~g~~VlV~G~-g~vG~~a~~~ak~~G~~~Vi~~~~~~~----~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~  243 (358)
T TIGR03451       169 VNTGGVKRGDSVAVIGC-GGVGDAAIAGAALAGASKIIAVDIDDR----KLEWAREFGATHTVNSSGTDPVEAIRALTGG  243 (358)
T ss_pred             HhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHH----HHHHHHHcCCceEEcCCCcCHHHHHHHHhCC
Confidence            34567899999999986 59999999999999996 666666554    78899999999988753  4556 7777777


Q ss_pred             CCCeEEEecCCCch-HHHHHHhcccCcEEEEEeccCCC-CcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHH
Q psy2961          79 PKPKLALNCVGGNS-ATNLLRTLVSKGVMVTYGGMSRE-PVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNEL  156 (202)
Q Consensus        79 ~~~d~vid~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  156 (202)
                      .++|++|||+|++. ...++++++++|+++.+|..... ...++...++.+++++.+++...+.        ..+.++++
T Consensus       244 ~g~d~vid~~g~~~~~~~~~~~~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~  315 (358)
T TIGR03451       244 FGADVVIDAVGRPETYKQAFYARDLAGTVVLVGVPTPDMTLELPLLDVFGRGGALKSSWYGDCL--------PERDFPML  315 (358)
T ss_pred             CCCCEEEECCCCHHHHHHHHHHhccCCEEEEECCCCCCceeeccHHHHhhcCCEEEEeecCCCC--------cHHHHHHH
Confidence            78999999999764 45588999999999999965432 2345555677888999887643211        13458889


Q ss_pred             HHHHHcCCCCC--CcceeechhhHHHHHHHHhhhcCCCCceEEEe
Q psy2961         157 TEMMRTGKLAA--PAHKFVTLKNFQEALMNTMSIQGKSGVKYYID  199 (202)
Q Consensus       157 ~~~~~~g~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~  199 (202)
                      ++++.+|++++  .++++||++++++||+.+.  +++.. |+++.
T Consensus       316 ~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~--~~~~~-k~~~~  357 (358)
T TIGR03451       316 VDLYLQGRLPLDAFVTERIGLDDVEEAFDKMH--AGDVL-RSVVE  357 (358)
T ss_pred             HHHHHcCCCCchheEEEEecHHHHHHHHHHHh--CCCcc-eeEEe
Confidence            99999999986  3789999999999999998  66654 77775

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>KOG0024|consensus

Probab=99.93  E-value=3.3e-24  Score=158.09  Aligned_cols=180  Identities=20%  Similarity=0.298  Sum_probs=150.0

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeCh------hHHHh-HHHhh
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE------EELRN-ISRDA   76 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~------~~~~~-~~~~~   76 (202)
                      +++++++|++|||+|+| ++|+.+...|+.+|+..|++++-.+.   |++.++++|++.+.+.      .++.+ +....
T Consensus       163 r~~~vk~Gs~vLV~GAG-PIGl~t~l~Aka~GA~~VVi~d~~~~---Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~  238 (354)
T KOG0024|consen  163 RRAGVKKGSKVLVLGAG-PIGLLTGLVAKAMGASDVVITDLVAN---RLELAKKFGATVTDPSSHKSSPQELAELVEKAL  238 (354)
T ss_pred             hhcCcccCCeEEEECCc-HHHHHHHHHHHHcCCCcEEEeecCHH---HHHHHHHhCCeEEeeccccccHHHHHHHHHhhc
Confidence            57899999999999999 99999999999999987777766554   8999999999988842      33445 55555


Q ss_pred             CCCCCeEEEecCCCchHHH-HHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHH
Q psy2961          77 SIPKPKLALNCVGGNSATN-LLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNE  155 (202)
Q Consensus        77 ~~~~~d~vid~~g~~~~~~-~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  155 (202)
                      +...+|+.|||+|.....+ ++..++++|++++++ ......+++......+++.+.|++.+.           ..++..
T Consensus       239 g~~~~d~~~dCsG~~~~~~aai~a~r~gGt~vlvg-~g~~~~~fpi~~v~~kE~~~~g~fry~-----------~~~y~~  306 (354)
T KOG0024|consen  239 GKKQPDVTFDCSGAEVTIRAAIKATRSGGTVVLVG-MGAEEIQFPIIDVALKEVDLRGSFRYC-----------NGDYPT  306 (354)
T ss_pred             cccCCCeEEEccCchHHHHHHHHHhccCCEEEEec-cCCCccccChhhhhhheeeeeeeeeec-----------cccHHH
Confidence            5566999999999888776 789999999988877 555567889889999999999998553           346999


Q ss_pred             HHHHHHcCCCCC--CcceeechhhHHHHHHHHhhhcCC-CCceEEEeec
Q psy2961         156 LTEMMRTGKLAA--PAHKFVTLKNFQEALMNTMSIQGK-SGVKYYIDFR  201 (202)
Q Consensus       156 ~~~~~~~g~~~~--~~~~~~~~~~~~~a~~~~~~~~~~-~~gkvv~~~~  201 (202)
                      .++++++|++..  .+++.|+++++++||+...  .++ ...|+++..+
T Consensus       307 ai~li~sGki~~k~lIT~r~~~~~~~eAf~~~~--~~~~~~iKv~i~~~  353 (354)
T KOG0024|consen  307 AIELVSSGKIDVKPLITHRYKFDDADEAFETLQ--HGEEGVIKVIITGP  353 (354)
T ss_pred             HHHHHHcCCcCchhheecccccchHHHHHHHHH--hCcCCceEEEEeCC
Confidence            999999999886  4899999999999999998  444 3569998764

>PLN02827 Alcohol dehydrogenase-like

Probab=99.93  E-value=4.2e-24  Score=167.91  Aligned_cols=180  Identities=20%  Similarity=0.311  Sum_probs=142.1

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEE-EEecCcccHHHHHHHHHhcCCceEeChh----HHHh-HHHhhC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTI-NIVRNRDDIDKLKSYLKSLGADYVFTEE----ELRN-ISRDAS   77 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi-~~~~~~~~~~~~~~~~~~lg~~~v~~~~----~~~~-~~~~~~   77 (202)
                      +.+++++|++|||+|+| ++|++++|+|+..|++++ ++..+++    +.+.++++|++.++++.    ++.+ +++.+.
T Consensus       187 ~~~~~~~g~~VlV~G~G-~vG~~~iqlak~~G~~~vi~~~~~~~----~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~  261 (378)
T PLN02827        187 NVADVSKGSSVVIFGLG-TVGLSVAQGAKLRGASQIIGVDINPE----KAEKAKTFGVTDFINPNDLSEPIQQVIKRMTG  261 (378)
T ss_pred             hhcCCCCCCEEEEECCC-HHHHHHHHHHHHcCCCeEEEECCCHH----HHHHHHHcCCcEEEcccccchHHHHHHHHHhC
Confidence            45678999999999975 999999999999999644 4444543    68899999999988753    4555 777766


Q ss_pred             CCCCeEEEecCCCch-HHHHHHhcccC-cEEEEEeccCCCCcCCCc-ccccccCeeEEEEechhHhhhcccHHHHHHHHH
Q psy2961          78 IPKPKLALNCVGGNS-ATNLLRTLVSK-GVMVTYGGMSREPVQIPT-SAFIFKDITLRGHWMTRWQKENKESAERKSMMN  154 (202)
Q Consensus        78 ~~~~d~vid~~g~~~-~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  154 (202)
                      + ++|++||++|.+. +...+++++++ |+++.+|..... ..++. ..++.+++++.|+....|..        ...+.
T Consensus       262 ~-g~d~vid~~G~~~~~~~~l~~l~~g~G~iv~~G~~~~~-~~~~~~~~~~~~~~~i~g~~~~~~~~--------~~~~~  331 (378)
T PLN02827        262 G-GADYSFECVGDTGIATTALQSCSDGWGLTVTLGVPKAK-PEVSAHYGLFLSGRTLKGSLFGGWKP--------KSDLP  331 (378)
T ss_pred             C-CCCEEEECCCChHHHHHHHHhhccCCCEEEEECCcCCC-ccccccHHHHhcCceEEeeecCCCch--------hhhHH
Confidence            4 8999999999874 55689999998 999999965432 23333 34677899999987654321        33578


Q ss_pred             HHHHHHHcCCCCC--CcceeechhhHHHHHHHHhhhcCCCCceEEEeec
Q psy2961         155 ELTEMMRTGKLAA--PAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  201 (202)
Q Consensus       155 ~~~~~~~~g~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~~  201 (202)
                      ++++++.+|++++  .++++|+++++++||+.+.  +++. .|+||++.
T Consensus       332 ~~~~~~~~g~i~~~~~i~~~~~le~~~~A~~~~~--~~~~-~k~vi~~~  377 (378)
T PLN02827        332 SLVDKYMNKEIMIDEFITHNLSFDEINKAFELMR--EGKC-LRCVIHMP  377 (378)
T ss_pred             HHHHHHHcCCCChHHheEEEecHHHHHHHHHHHH--CCCc-eEEEEEec
Confidence            8999999999998  5889999999999999998  7765 69999874

>cd08293 PTGR2 Prostaglandin reductase

Probab=99.93  E-value=8.9e-24  Score=164.34  Aligned_cols=185  Identities=21%  Similarity=0.353  Sum_probs=139.1

Q ss_pred             ccccCCCCC--CEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcccHHHHHHHHHh-cCCceEeCh--hHHHh-HHHh
Q psy2961           3 KDYNSLSPG--DVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKS-LGADYVFTE--EELRN-ISRD   75 (202)
Q Consensus         3 ~~~~~~~~g--~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~~~~~~~~~~~~-lg~~~v~~~--~~~~~-~~~~   75 (202)
                      .+.+++++|  ++|||+|++|++|++++|+|+++|+ +|++++++++    +.+.+++ +|++.++++  .++.+ +++.
T Consensus       145 ~~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~----~~~~~~~~lGa~~vi~~~~~~~~~~i~~~  220 (345)
T cd08293         145 QEKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDE----KCQLLKSELGFDAAINYKTDNVAERLREL  220 (345)
T ss_pred             HHhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHH----HHHHHHHhcCCcEEEECCCCCHHHHHHHH
Confidence            345667776  9999999988999999999999999 7888887765    5777765 999998875  35666 7776


Q ss_pred             hCCCCCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCC--CcCCCc------ccc-cccCeeEEEEechhHhhhcccH
Q psy2961          76 ASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSRE--PVQIPT------SAF-IFKDITLRGHWMTRWQKENKES  146 (202)
Q Consensus        76 ~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~--~~~~~~------~~~-~~~~~~~~g~~~~~~~~~~~~~  146 (202)
                      ++ .++|++||++|+......+++|+++|+++.+|.....  ....+.      ..+ ..+++++..+....+      +
T Consensus       221 ~~-~gvd~vid~~g~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~  293 (345)
T cd08293         221 CP-EGVDVYFDNVGGEISDTVISQMNENSHIILCGQISQYNKDVPYPPPLPEATEAILKERNITRERFLVLNY------K  293 (345)
T ss_pred             CC-CCceEEEECCCcHHHHHHHHHhccCCEEEEEeeeecccCccCccccccchhHHHhhhcceEEEEEEeecc------H
Confidence            65 6899999999998877799999999999999853221  111110      011 123444444332111      1


Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         147 AERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       147 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      ....+.++++.+++.+|++++.+..+++++++++||+.+.  +++..||+|+++
T Consensus       294 ~~~~~~~~~~~~l~~~g~i~~~~~~~~~l~~~~~A~~~~~--~~~~~gkvvl~~  345 (345)
T cd08293         294 DKFEEAIAQLSQWVKEGKLKVKETVYEGLENAGEAFQSMM--NGGNIGKQIVKV  345 (345)
T ss_pred             hHHHHHHHHHHHHHHCCCccceeEEeecHHHHHHHHHHHh--cCCCCCeEEEEC
Confidence            3345678889999999999987666779999999999998  888889999875

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=99.93  E-value=5.8e-24  Score=166.15  Aligned_cols=175  Identities=17%  Similarity=0.299  Sum_probs=138.3

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEE
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLA   84 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~v   84 (202)
                      ...+++|++|+|.|+| ++|++++|+|+.+|+++++++.++++   +.+.++++|++.++++.+...+.+.+  .++|++
T Consensus       178 ~~~~~~g~~VlV~G~G-~vG~~avq~Ak~~Ga~vi~~~~~~~~---~~~~~~~~Ga~~vi~~~~~~~~~~~~--~~~D~v  251 (360)
T PLN02586        178 YGMTEPGKHLGVAGLG-GLGHVAVKIGKAFGLKVTVISSSSNK---EDEAINRLGADSFLVSTDPEKMKAAI--GTMDYI  251 (360)
T ss_pred             hcccCCCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEeCCcch---hhhHHHhCCCcEEEcCCCHHHHHhhc--CCCCEE
Confidence            3456799999998875 99999999999999998887776653   35566889999998754432255544  269999


Q ss_pred             EecCCCch-HHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHHHcC
Q psy2961          85 LNCVGGNS-ATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTG  163 (202)
Q Consensus        85 id~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  163 (202)
                      ||++|.+. +...+++++++|+++.+|... ....++...++.++..+.++....           ...++++++++++|
T Consensus       252 id~~g~~~~~~~~~~~l~~~G~iv~vG~~~-~~~~~~~~~~~~~~~~i~g~~~~~-----------~~~~~~~~~li~~g  319 (360)
T PLN02586        252 IDTVSAVHALGPLLGLLKVNGKLITLGLPE-KPLELPIFPLVLGRKLVGGSDIGG-----------IKETQEMLDFCAKH  319 (360)
T ss_pred             EECCCCHHHHHHHHHHhcCCcEEEEeCCCC-CCCccCHHHHHhCCeEEEEcCcCC-----------HHHHHHHHHHHHhC
Confidence            99999864 456899999999999998543 334566666677788887776432           23588899999999


Q ss_pred             CCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         164 KLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      ++++.+ ++|+|+++++||+.+.  +++..||+|+.+
T Consensus       320 ~i~~~~-~~~~l~~~~~A~~~~~--~~~~~gkvvi~~  353 (360)
T PLN02586        320 NITADI-ELIRMDEINTAMERLA--KSDVRYRFVIDV  353 (360)
T ss_pred             CCCCcE-EEEeHHHHHHHHHHHH--cCCCcEEEEEEc
Confidence            999866 6899999999999999  888889999976

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=99.93  E-value=6.5e-24  Score=164.75  Aligned_cols=175  Identities=26%  Similarity=0.300  Sum_probs=140.7

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCc-EEEEecCcccHHHHHHHHHhcCCceEeChhH-HHh-HHHhhCCCCC
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLGADYVFTEEE-LRN-ISRDASIPKP   81 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~-~~~-~~~~~~~~~~   81 (202)
                      ..++++|++|+|+|+ |++|++++|+|+.+|++ ++++.++++    +.+.++++|++.++++.+ ..+ +.+.+.+.++
T Consensus       158 ~~~~~~g~~vlV~G~-G~vG~~~~~~ak~~G~~~vi~~~~~~~----~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~  232 (339)
T cd08239         158 RVGVSGRDTVLVVGA-GPVGLGALMLARALGAEDVIGVDPSPE----RLELAKALGADFVINSGQDDVQEIRELTSGAGA  232 (339)
T ss_pred             hcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHH----HHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCC
Confidence            456789999999987 59999999999999999 777766654    688889999999987532 144 7676766789


Q ss_pred             eEEEecCCCchH-HHHHHhcccCcEEEEEeccCCCCcCCCc-ccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHH
Q psy2961          82 KLALNCVGGNSA-TNLLRTLVSKGVMVTYGGMSREPVQIPT-SAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEM  159 (202)
Q Consensus        82 d~vid~~g~~~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (202)
                      |++|||+|++.. ...+++++++|+++.+|.....  .++. ..++.+++++.|++...           .+.+.+++++
T Consensus       233 d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~--~~~~~~~~~~~~~~i~g~~~~~-----------~~~~~~~~~~  299 (339)
T cd08239         233 DVAIECSGNTAARRLALEAVRPWGRLVLVGEGGEL--TIEVSNDLIRKQRTLIGSWYFS-----------VPDMEECAEF  299 (339)
T ss_pred             CEEEECCCCHHHHHHHHHHhhcCCEEEEEcCCCCc--ccCcHHHHHhCCCEEEEEecCC-----------HHHHHHHHHH
Confidence            999999998876 4589999999999999965432  2332 35677899999987542           3458889999


Q ss_pred             HHcCCCCC--CcceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         160 MRTGKLAA--PAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       160 ~~~g~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      +.+|++.+  .++++|+++++++||+.+.  ++. .||+|++|
T Consensus       300 ~~~g~i~~~~~i~~~~~l~~~~~a~~~~~--~~~-~gKvvi~~  339 (339)
T cd08239         300 LARHKLEVDRLVTHRFGLDQAPEAYALFA--QGE-SGKVVFVF  339 (339)
T ss_pred             HHcCCCChhHeEEEEecHHHHHHHHHHHH--cCC-ceEEEEeC
Confidence            99999875  4788999999999999988  665 68999975

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=99.92  E-value=8.7e-24  Score=165.78  Aligned_cols=172  Identities=16%  Similarity=0.314  Sum_probs=139.7

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEec
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNC   87 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~   87 (202)
                      .++|++|+|.|+| ++|++++|+|+.+|++++++++++++   +.+.++++|+++++++.+...+.+.+  .++|++|||
T Consensus       176 ~~~g~~VlV~G~G-~vG~~avq~Ak~~Ga~Vi~~~~~~~~---~~~~a~~lGa~~~i~~~~~~~v~~~~--~~~D~vid~  249 (375)
T PLN02178        176 KESGKRLGVNGLG-GLGHIAVKIGKAFGLRVTVISRSSEK---EREAIDRLGADSFLVTTDSQKMKEAV--GTMDFIIDT  249 (375)
T ss_pred             CCCCCEEEEEccc-HHHHHHHHHHHHcCCeEEEEeCChHH---hHHHHHhCCCcEEEcCcCHHHHHHhh--CCCcEEEEC
Confidence            3689999999885 99999999999999998888776542   46788899999998765432255554  369999999


Q ss_pred             CCCch-HHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHHHcCCCC
Q psy2961          88 VGGNS-ATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLA  166 (202)
Q Consensus        88 ~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  166 (202)
                      +|.+. +...+++++++|+++.+|... ....++...++.+++++.|+....           .+.+.++++++.+|+++
T Consensus       250 ~G~~~~~~~~~~~l~~~G~iv~vG~~~-~~~~~~~~~~~~~~~~i~g~~~~~-----------~~~~~~~~~l~~~g~i~  317 (375)
T PLN02178        250 VSAEHALLPLFSLLKVSGKLVALGLPE-KPLDLPIFPLVLGRKMVGGSQIGG-----------MKETQEMLEFCAKHKIV  317 (375)
T ss_pred             CCcHHHHHHHHHhhcCCCEEEEEccCC-CCCccCHHHHHhCCeEEEEeCccC-----------HHHHHHHHHHHHhCCCc
Confidence            99874 456899999999999998543 344566667778899999877542           24588899999999999


Q ss_pred             CCcceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         167 APAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       167 ~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      +.+ ++|||+++++||+.+.  +++..||+|+.+
T Consensus       318 ~~i-~~~~l~~~~~A~~~~~--~~~~~gkvvi~~  348 (375)
T PLN02178        318 SDI-ELIKMSDINSAMDRLA--KSDVRYRFVIDV  348 (375)
T ss_pred             ccE-EEEeHHHHHHHHHHHH--cCCCceEEEEEe
Confidence            876 6799999999999999  888889999986

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=99.92  E-value=2.2e-23  Score=160.75  Aligned_cols=188  Identities=32%  Similarity=0.505  Sum_probs=153.3

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChh--HHHh-HHHhhCCCCC
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRDASIPKP   81 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~--~~~~-~~~~~~~~~~   81 (202)
                      .+++++|++|+|+|+++++|++++|+|+.+|+++++++++++    +.+.++++|++.++++.  ++.. +.+.+.+.++
T Consensus       134 ~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~  209 (324)
T cd08292         134 FLGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDA----GVAELRALGIGPVVSTEQPGWQDKVREAAGGAPI  209 (324)
T ss_pred             hhCCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHH----HHHHHHhcCCCEEEcCCCchHHHHHHHHhCCCCC
Confidence            367889999999999889999999999999999999988876    46777778998888753  4556 7788887899


Q ss_pred             eEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHHH
Q psy2961          82 KLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMR  161 (202)
Q Consensus        82 d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (202)
                      |++|||+|++.....+++++++|+++.+|........++....+.++.++.++....+..... +....+.+..+++++.
T Consensus       210 d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~  288 (324)
T cd08292         210 SVALDSVGGKLAGELLSLLGEGGTLVSFGSMSGEPMQISSGDLIFKQATVRGFWGGRWSQEMS-VEYRKRMIAELLTLAL  288 (324)
T ss_pred             cEEEECCCChhHHHHHHhhcCCcEEEEEecCCCCCCcCCHHHHhhCCCEEEEEEcHHhhhhcC-HHHHHHHHHHHHHHHH
Confidence            999999999877779999999999999986543333444444567899999988766543321 1345678999999999


Q ss_pred             cCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEe
Q psy2961         162 TGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYID  199 (202)
Q Consensus       162 ~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~  199 (202)
                      +|.+.+.+.++|+++++++||+.+.  .+...+|++++
T Consensus       289 ~g~i~~~~~~~~~~~~~~~a~~~~~--~~~~~~kvvv~  324 (324)
T cd08292         289 KGQLLLPVEAVFDLGDAAKAAAASM--RPGRAGKVLLR  324 (324)
T ss_pred             CCCccCccccEecHHHHHHHHHHHH--cCCCCceEEeC
Confidence            9999977788999999999999998  77778899874

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=99.92  E-value=8.3e-24  Score=164.67  Aligned_cols=182  Identities=19%  Similarity=0.195  Sum_probs=140.2

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcE-EEEecCcccHHHHHHHHHhcCCceEeChhH-HHh-HHHhhCCCCC
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWGLKT-INIVRNRDDIDKLKSYLKSLGADYVFTEEE-LRN-ISRDASIPKP   81 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~v-i~~~~~~~~~~~~~~~~~~lg~~~v~~~~~-~~~-~~~~~~~~~~   81 (202)
                      .+.+++|++|+|+|+ |++|++++|+|+.+|+++ +++.++++    +++.++++|++.++++.+ ... +.+.+.+.++
T Consensus       155 ~~~~~~g~~vlV~G~-g~vG~~~~~~a~~~G~~~v~~~~~~~~----~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~  229 (347)
T PRK10309        155 LAQGCEGKNVIIIGA-GTIGLLAIQCAVALGAKSVTAIDINSE----KLALAKSLGAMQTFNSREMSAPQIQSVLRELRF  229 (347)
T ss_pred             hcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHH----HHHHHHHcCCceEecCcccCHHHHHHHhcCCCC
Confidence            456789999999986 599999999999999984 55555554    678889999999887532 133 6666666688


Q ss_pred             e-EEEecCCCchH-HHHHHhcccCcEEEEEeccCCCCcCCC---cccccccCeeEEEEechhHhhhcccHHHHHHHHHHH
Q psy2961          82 K-LALNCVGGNSA-TNLLRTLVSKGVMVTYGGMSREPVQIP---TSAFIFKDITLRGHWMTRWQKENKESAERKSMMNEL  156 (202)
Q Consensus        82 d-~vid~~g~~~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  156 (202)
                      | ++|||+|++.. ..++++++++|+++.+|.... ...++   ...++.+++++.|++.......      ..+.++++
T Consensus       230 d~~v~d~~G~~~~~~~~~~~l~~~G~iv~~G~~~~-~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~------~~~~~~~~  302 (347)
T PRK10309        230 DQLILETAGVPQTVELAIEIAGPRAQLALVGTLHH-DLHLTSATFGKILRKELTVIGSWMNYSSPW------PGQEWETA  302 (347)
T ss_pred             CeEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCC-CcccChhhhhHHhhcCcEEEEEeccccCCc------chhHHHHH
Confidence            8 99999998754 558999999999999996543 22232   2346678899999775421110      13457889


Q ss_pred             HHHHHcCCCC--CCcceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         157 TEMMRTGKLA--APAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       157 ~~~~~~g~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      ++++.+|.+.  +.++++|+|+++++||+.+.  ++...||+|+++
T Consensus       303 ~~~~~~g~i~~~~~i~~~~~l~~~~~A~~~~~--~~~~~gKvvv~~  346 (347)
T PRK10309        303 SRLLTERKLSLEPLIAHRGSFESFAQAVRDLA--GNPMPGKVLLQI  346 (347)
T ss_pred             HHHHHcCCCCchhheEEEeeHHHHHHHHHHHh--cCCcceEEEEeC
Confidence            9999999986  45889999999999999998  777789999976

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=99.92  E-value=1.9e-23  Score=162.74  Aligned_cols=176  Identities=19%  Similarity=0.265  Sum_probs=141.7

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChh-----HHHh-HHHhhCC
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE-----ELRN-ISRDASI   78 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~-----~~~~-~~~~~~~   78 (202)
                      ..++++|++|+|+|+ |++|++++|+|+..|++++++.++++    +++.++++|++.++++.     ++.+ +++.+++
T Consensus       161 ~~~~~~g~~VlV~G~-G~vG~~a~~~a~~~G~~vi~~~~~~~----~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~  235 (349)
T TIGR03201       161 QAGLKKGDLVIVIGA-GGVGGYMVQTAKAMGAAVVAIDIDPE----KLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKA  235 (349)
T ss_pred             hcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEcCCHH----HHHHHHHhCCceEecCccccHHHHHHHHHhhccc
Confidence            367889999999999 69999999999999999888777665    68889999999888742     4555 7777777


Q ss_pred             CCCe----EEEecCCCchHH-HHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHH
Q psy2961          79 PKPK----LALNCVGGNSAT-NLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMM  153 (202)
Q Consensus        79 ~~~d----~vid~~g~~~~~-~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  153 (202)
                      .++|    ++|||+|++... .++++++++|+++.+|.... ...++...++.++.++.|.+...           .+.+
T Consensus       236 ~g~d~~~d~v~d~~g~~~~~~~~~~~l~~~G~iv~~G~~~~-~~~~~~~~~~~~~~~~~g~~~~~-----------~~~~  303 (349)
T TIGR03201       236 RGLRSTGWKIFECSGSKPGQESALSLLSHGGTLVVVGYTMA-KTEYRLSNLMAFHARALGNWGCP-----------PDRY  303 (349)
T ss_pred             CCCCCCcCEEEECCCChHHHHHHHHHHhcCCeEEEECcCCC-CcccCHHHHhhcccEEEEEecCC-----------HHHH
Confidence            7776    899999987765 47899999999999996543 23455556667778888876321           3458


Q ss_pred             HHHHHHHHcCCCCCC-cceeechhhHHHHHHHHhhhcCCCCceEEEe
Q psy2961         154 NELTEMMRTGKLAAP-AHKFVTLKNFQEALMNTMSIQGKSGVKYYID  199 (202)
Q Consensus       154 ~~~~~~~~~g~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~  199 (202)
                      .++++++++|++++. +.++|+++++++||+.+.  +++..+|++++
T Consensus       304 ~~~~~~i~~g~i~~~~~i~~~~l~~~~~A~~~~~--~~~~~~k~~~~  348 (349)
T TIGR03201       304 PAALDLVLDGKIQLGPFVERRPLDQIEHVFAAAH--HHKLKRRAILT  348 (349)
T ss_pred             HHHHHHHHcCCCCcccceEEecHHHHHHHHHHHH--cCCccceEEec
Confidence            889999999999863 445799999999999999  88888999885

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=99.92  E-value=7.4e-24  Score=157.45  Aligned_cols=182  Identities=21%  Similarity=0.248  Sum_probs=146.7

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChh---HHHh-HHHhhC
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE---ELRN-ISRDAS   77 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~---~~~~-~~~~~~   77 (202)
                      ..+.+++++|++|.|+|.+ ++|++++|-|+..|+..|..++..+.   |+++++++|+++++|+.   +..+ +.+.++
T Consensus       177 v~nta~v~~G~tvaV~GlG-gVGlaaI~gA~~agA~~IiAvD~~~~---Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~T~  252 (366)
T COG1062         177 VVNTAKVEPGDTVAVFGLG-GVGLAAIQGAKAAGAGRIIAVDINPE---KLELAKKFGATHFVNPKEVDDVVEAIVELTD  252 (366)
T ss_pred             hhhcccCCCCCeEEEEecc-HhHHHHHHHHHHcCCceEEEEeCCHH---HHHHHHhcCCceeecchhhhhHHHHHHHhcC
Confidence            3467889999999999999 99999999999999976666655543   89999999999999864   4666 888886


Q ss_pred             CCCCeEEEecCCCchHHH-HHHhcccCcEEEEEeccCCC-CcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHH
Q psy2961          78 IPKPKLALNCVGGNSATN-LLRTLVSKGVMVTYGGMSRE-PVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNE  155 (202)
Q Consensus        78 ~~~~d~vid~~g~~~~~~-~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  155 (202)
                      + ++|++|||+|+....+ ++.++.++|+.+.+|..... ..++++..+... .++.|+....-..        +.++.+
T Consensus       253 g-G~d~~~e~~G~~~~~~~al~~~~~~G~~v~iGv~~~~~~i~~~~~~lv~g-r~~~Gs~~G~~~p--------~~diP~  322 (366)
T COG1062         253 G-GADYAFECVGNVEVMRQALEATHRGGTSVIIGVAGAGQEISTRPFQLVTG-RVWKGSAFGGARP--------RSDIPR  322 (366)
T ss_pred             C-CCCEEEEccCCHHHHHHHHHHHhcCCeEEEEecCCCCceeecChHHeecc-ceEEEEeecCCcc--------ccchhH
Confidence            4 9999999999987665 88999999999999954433 223455556555 8899988765332        556999


Q ss_pred             HHHHHHcCCCCCC--cceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         156 LTEMMRTGKLAAP--AHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       156 ~~~~~~~g~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      +++++.+|+|...  ++++++||+++|||+.+.  +++.. |-||.|
T Consensus       323 lv~~y~~Gkl~~d~lvt~~~~Le~INeaf~~m~--~G~~I-R~Vi~~  366 (366)
T COG1062         323 LVDLYMAGKLPLDRLVTHTIPLEDINEAFDLMH--EGKSI-RSVIRF  366 (366)
T ss_pred             HHHHHHcCCCchhHHhhccccHHHHHHHHHHHh--CCcee-eEEecC
Confidence            9999999999864  889999999999999999  77754 666543

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=99.92  E-value=2.9e-23  Score=160.38  Aligned_cols=168  Identities=15%  Similarity=0.119  Sum_probs=134.9

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEE
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLA   84 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~v   84 (202)
                      .+++++|++|||+|+ |++|++++|+|+..|+++++++++++    +++.++++|+++++++.+.       ...++|++
T Consensus       160 ~~~~~~g~~VlV~G~-g~iG~~a~~~a~~~G~~vi~~~~~~~----~~~~a~~~Ga~~vi~~~~~-------~~~~~d~~  227 (329)
T TIGR02822       160 RASLPPGGRLGLYGF-GGSAHLTAQVALAQGATVHVMTRGAA----ARRLALALGAASAGGAYDT-------PPEPLDAA  227 (329)
T ss_pred             hcCCCCCCEEEEEcC-CHHHHHHHHHHHHCCCeEEEEeCChH----HHHHHHHhCCceecccccc-------CcccceEE
Confidence            467899999999998 59999999999999999888887765    6899999999999874321       11468988


Q ss_pred             EecCCCchH-HHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHHHcC
Q psy2961          85 LNCVGGNSA-TNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTG  163 (202)
Q Consensus        85 id~~g~~~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  163 (202)
                      +++.+.... ...+++++++|+++.+|...+....++...++.+++++.+++...           .+.+.++++++.+|
T Consensus       228 i~~~~~~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~-----------~~~~~~~~~l~~~g  296 (329)
T TIGR02822       228 ILFAPAGGLVPPALEALDRGGVLAVAGIHLTDTPPLNYQRHLFYERQIRSVTSNT-----------RADAREFLELAAQH  296 (329)
T ss_pred             EECCCcHHHHHHHHHhhCCCcEEEEEeccCccCCCCCHHHHhhCCcEEEEeecCC-----------HHHHHHHHHHHHhC
Confidence            887765544 458999999999999996444333455556677888888876432           34477888999999


Q ss_pred             CCCCCcceeechhhHHHHHHHHhhhcCCCCceEEE
Q psy2961         164 KLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYI  198 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~  198 (202)
                      ++++ ++++|+|+++++||+.+.  +++..||+||
T Consensus       297 ~i~~-i~~~~~l~~~~~A~~~~~--~~~~~Gkvvl  328 (329)
T TIGR02822       297 GVRV-TTHTYPLSEADRALRDLK--AGRFDGAAVL  328 (329)
T ss_pred             CCee-EEEEEeHHHHHHHHHHHH--cCCCceEEEe
Confidence            9975 578999999999999999  8888999987

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>KOG1202|consensus

Probab=99.92  E-value=6.3e-24  Score=176.91  Aligned_cols=193  Identities=15%  Similarity=0.203  Sum_probs=161.7

Q ss_pred             CcccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHH----hcCCceEeCh--hHHHh-HH
Q psy2961           1 MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK----SLGADYVFTE--EELRN-IS   73 (202)
Q Consensus         1 ~l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~----~lg~~~v~~~--~~~~~-~~   73 (202)
                      ||+.+++.++|+++||++++|++|+++|.+|..+|+.|++++++.+    +++++.    +|..+.+-|.  .+++. +.
T Consensus      1543 ALVvRG~mkkGekiLIHaGsGGVGQAAIaiALa~G~~VFTTVGSaE----KRefL~~rFPqLqe~~~~NSRdtsFEq~vl 1618 (2376)
T KOG1202|consen 1543 ALVVRGQMKKGEKILIHAGSGGVGQAAIAIALAHGCTVFTTVGSAE----KREFLLKRFPQLQETNFANSRDTSFEQHVL 1618 (2376)
T ss_pred             hhhhhccccCCcEEEEecCCCchhHHHHHHHHHcCCEEEEecCcHH----HHHHHHHhchhhhhhcccccccccHHHHHH
Confidence            4778899999999999999999999999999999999999999987    566664    3556666664  45777 99


Q ss_pred             HhhCCCCCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHH
Q psy2961          74 RDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMM  153 (202)
Q Consensus        74 ~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  153 (202)
                      +.|.|.|+|+|+++...+.++..++||+-.||+..+|-..-.+.+.-....+.++.+++|..+.++.....  ++..+..
T Consensus      1619 ~~T~GrGVdlVLNSLaeEkLQASiRCLa~~GRFLEIGKfDLSqNspLGMavfLkNvsfHGiLLDsvmege~--e~~~ev~ 1696 (2376)
T KOG1202|consen 1619 WHTKGRGVDLVLNSLAEEKLQASIRCLALHGRFLEIGKFDLSQNSPLGMAVFLKNVSFHGILLDSVMEGEE--EMWREVA 1696 (2376)
T ss_pred             HHhcCCCeeeehhhhhHHHHHHHHHHHHhcCeeeeecceecccCCcchhhhhhcccceeeeehhhhhcCcH--HHHHHHH
Confidence            99999999999999999999999999999999999995443333333345678999999999998876543  4455555


Q ss_pred             HHHHHHHHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEeec
Q psy2961         154 NELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  201 (202)
Q Consensus       154 ~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~~  201 (202)
                      .-+.+-+++|.++|..+++|+-.++++||+.|.  +++..||+|+++.
T Consensus      1697 ~Lv~eGIksGvV~PL~ttvF~~~qvE~AFRfMa--sGKHIGKVvikvr 1742 (2376)
T KOG1202|consen 1697 ALVAEGIKSGVVRPLPTTVFHGQQVEDAFRFMA--SGKHIGKVVIKVR 1742 (2376)
T ss_pred             HHHHhhhccCceeccccccccHHHHHHHHHHHh--ccCccceEEEEEc
Confidence            566666777888999999999999999999999  9999999999985

>PLN02740 Alcohol dehydrogenase-like

Probab=99.91  E-value=5.6e-23  Score=161.81  Aligned_cols=180  Identities=17%  Similarity=0.219  Sum_probs=138.6

Q ss_pred             ccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcccHHHHHHHHHhcCCceEeChh----HHHh-HHHhh
Q psy2961           3 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTEE----ELRN-ISRDA   76 (202)
Q Consensus         3 ~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~----~~~~-~~~~~   76 (202)
                      .+.+++++|++|||+|+ |++|++++|+|+.+|+ +|+++.++++    +++.++++|++.++++.    ++.+ +.+.+
T Consensus       191 ~~~~~~~~g~~VlV~G~-G~vG~~a~q~ak~~G~~~Vi~~~~~~~----r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~  265 (381)
T PLN02740        191 WNTANVQAGSSVAIFGL-GAVGLAVAEGARARGASKIIGVDINPE----KFEKGKEMGITDFINPKDSDKPVHERIREMT  265 (381)
T ss_pred             HhccCCCCCCEEEEECC-CHHHHHHHHHHHHCCCCcEEEEcCChH----HHHHHHHcCCcEEEecccccchHHHHHHHHh
Confidence            34578899999999997 4999999999999999 4777766654    78999999999988753    3556 77776


Q ss_pred             CCCCCeEEEecCCCchH-HHHHHhcccC-cEEEEEeccCCC-CcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHH
Q psy2961          77 SIPKPKLALNCVGGNSA-TNLLRTLVSK-GVMVTYGGMSRE-PVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMM  153 (202)
Q Consensus        77 ~~~~~d~vid~~g~~~~-~~~~~~l~~~-G~~v~~g~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  153 (202)
                      .+ ++|++||++|++.. ...+.+++++ |+++.+|..... ...++...+ .+++++.|+....|..        ...+
T Consensus       266 ~~-g~dvvid~~G~~~~~~~a~~~~~~g~G~~v~~G~~~~~~~~~~~~~~~-~~~~~i~g~~~~~~~~--------~~~~  335 (381)
T PLN02740        266 GG-GVDYSFECAGNVEVLREAFLSTHDGWGLTVLLGIHPTPKMLPLHPMEL-FDGRSITGSVFGDFKG--------KSQL  335 (381)
T ss_pred             CC-CCCEEEECCCChHHHHHHHHhhhcCCCEEEEEccCCCCceecccHHHH-hcCCeEEEEecCCCCc--------HHHH
Confidence            65 89999999998654 4588999996 999999965432 112222223 4678898887654321        2348


Q ss_pred             HHHHHHHHcCCCCC--CcceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         154 NELTEMMRTGKLAA--PAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       154 ~~~~~~~~~g~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      .++++++.+|++++  .++++|+++++++||+.+.  +++. .|++|+.
T Consensus       336 ~~~~~~~~~g~i~~~~~it~~~~l~e~~~A~~~~~--~~~~-~k~~~~~  381 (381)
T PLN02740        336 PNLAKQCMQGVVNLDGFITHELPFEKINEAFQLLE--DGKA-LRCLLHL  381 (381)
T ss_pred             HHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHH--CCCc-eeEEEeC
Confidence            88999999999876  4789999999999999998  6654 5999863

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=99.91  E-value=6.5e-23  Score=162.82  Aligned_cols=180  Identities=16%  Similarity=0.118  Sum_probs=141.3

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCC---cEEEEecCcccHHHHHHHHHhc--------CCc-eEeCh---hH
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGL---KTINIVRNRDDIDKLKSYLKSL--------GAD-YVFTE---EE   68 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~---~vi~~~~~~~~~~~~~~~~~~l--------g~~-~v~~~---~~   68 (202)
                      +++++++|++|+|+|++|++|++++|+|+..|+   +|+++..+++    +++.++++        |++ .++++   .+
T Consensus       169 ~~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~----r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~  244 (410)
T cd08238         169 HRMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDE----RLARAQRLFPPEAASRGIELLYVNPATIDD  244 (410)
T ss_pred             hhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHH----HHHHHHHhccccccccCceEEEECCCcccc
Confidence            457889999999999888999999999999864   6777766665    67888886        665 45664   35


Q ss_pred             HHh-HHHhhCCCCCeEEEecCCCchH-HHHHHhcccCcEEEEEeccCCC--CcCCCcccccccCeeEEEEechhHhhhcc
Q psy2961          69 LRN-ISRDASIPKPKLALNCVGGNSA-TNLLRTLVSKGVMVTYGGMSRE--PVQIPTSAFIFKDITLRGHWMTRWQKENK  144 (202)
Q Consensus        69 ~~~-~~~~~~~~~~d~vid~~g~~~~-~~~~~~l~~~G~~v~~g~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  144 (202)
                      +.+ +++.+++.++|++||++|.+.. ...+++++++|+++.++.....  ..+++...++.+++++.|+....      
T Consensus       245 ~~~~v~~~t~g~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~------  318 (410)
T cd08238         245 LHATLMELTGGQGFDDVFVFVPVPELVEEADTLLAPDGCLNFFAGPVDKNFSAPLNFYNVHYNNTHYVGTSGGN------  318 (410)
T ss_pred             HHHHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHhccCCeEEEEEccCCCCccccccHHHhhhcCcEEEEeCCCC------
Confidence            666 7777877789999999986554 4589999999998877543221  23556667788999999976432      


Q ss_pred             cHHHHHHHHHHHHHHHHcCCCCC--CcceeechhhHHHHHHHHhhhcCCCCceEEEeec
Q psy2961         145 ESAERKSMMNELTEMMRTGKLAA--PAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  201 (202)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~~  201 (202)
                           .+.++++++++.+|++++  .++++|+++++++||+.+.  .+ ..||+|+.++
T Consensus       319 -----~~~~~~~~~li~~g~i~~~~~it~~~~l~~~~~A~~~~~--~~-~~gKvvl~~~  369 (410)
T cd08238         319 -----TDDMKEAIDLMAAGKLNPARMVTHIGGLNAAAETTLNLP--GI-PGGKKLIYTQ  369 (410)
T ss_pred             -----HHHHHHHHHHHHcCCCchhhcEEEEecHHHHHHHHHHhh--cc-CCceEEEECC
Confidence                 345888999999999998  4789999999999999997  43 5689999864

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=99.91  E-value=1.7e-22  Score=156.84  Aligned_cols=192  Identities=55%  Similarity=0.883  Sum_probs=153.6

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChh-----HHHh-HHHhhC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE-----ELRN-ISRDAS   77 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~-----~~~~-~~~~~~   77 (202)
                      ..+++++|++|||+|++|++|++++|+|+..|++++++++++++.+++.+.++++|+++++++.     ++.. +.....
T Consensus       140 ~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~  219 (341)
T cd08290         140 DFVKLQPGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERLKALGADHVLTEEELRSLLATELLKSAPG  219 (341)
T ss_pred             hhcccCCCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCCcchhHHHHHHhcCCCEEEeCcccccccHHHHHHHHcC
Confidence            4467889999999999889999999999999999999998764333467888889999988754     4445 666665


Q ss_pred             CCCCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhh-hcccHHHHHHHHHHH
Q psy2961          78 IPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQK-ENKESAERKSMMNEL  156 (202)
Q Consensus        78 ~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~  156 (202)
                      + ++|++|||+|+......+++++++|+++.+|........++...++.++.++.+.....+.. ..  +......+.++
T Consensus       220 ~-~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  296 (341)
T cd08290         220 G-RPKLALNCVGGKSATELARLLSPGGTMVTYGGMSGQPVTVPTSLLIFKDITLRGFWLTRWLKRAN--PEEKEDMLEEL  296 (341)
T ss_pred             C-CceEEEECcCcHhHHHHHHHhCCCCEEEEEeccCCCCcccCHHHHhhCCceEEEEecHHHHhhcC--HHHHHHHHHHH
Confidence            5 89999999999887788999999999999985543333444445678899999988765543 22  14456679999


Q ss_pred             HHHHHcCCCCCCcceee---chhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         157 TEMMRTGKLAAPAHKFV---TLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       157 ~~~~~~g~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      ++++.+|.+.+....++   +++++++|++.+.  .+...+|+|++.
T Consensus       297 ~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~k~v~~~  341 (341)
T cd08290         297 AELIREGKLKAPPVEKVTDDPLEEFKDALANAL--KGGGGGKQVLVM  341 (341)
T ss_pred             HHHHHcCCccCCcccccccCCHHHHHHHHHHHh--hcCCCCeEEEeC
Confidence            99999999998766677   9999999999998  788889999863

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=99.91  E-value=9.1e-23  Score=159.34  Aligned_cols=176  Identities=16%  Similarity=0.221  Sum_probs=138.3

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEE
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLA   84 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~v   84 (202)
                      ....++|++|+|+|+ |++|++++|+|+..|++++++++++++   +...++++|++.++++.+...+.+.+  .++|++
T Consensus       175 ~~~~~~g~~vlV~G~-G~vG~~av~~Ak~~G~~vi~~~~~~~~---~~~~~~~~Ga~~~i~~~~~~~~~~~~--~~~D~v  248 (357)
T PLN02514        175 FGLKQSGLRGGILGL-GGVGHMGVKIAKAMGHHVTVISSSDKK---REEALEHLGADDYLVSSDAAEMQEAA--DSLDYI  248 (357)
T ss_pred             cccCCCCCeEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCCHHH---HHHHHHhcCCcEEecCCChHHHHHhc--CCCcEE
Confidence            344579999999976 599999999999999998888877652   33445679998877654322244443  369999


Q ss_pred             EecCCCch-HHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHHHcC
Q psy2961          85 LNCVGGNS-ATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTG  163 (202)
Q Consensus        85 id~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  163 (202)
                      |||+|... ....+++++++|+++.+|... ....++...++.+++++.|++...           ...+.++++++.+|
T Consensus       249 id~~g~~~~~~~~~~~l~~~G~iv~~G~~~-~~~~~~~~~~~~~~~~i~g~~~~~-----------~~~~~~~~~~~~~g  316 (357)
T PLN02514        249 IDTVPVFHPLEPYLSLLKLDGKLILMGVIN-TPLQFVTPMLMLGRKVITGSFIGS-----------MKETEEMLEFCKEK  316 (357)
T ss_pred             EECCCchHHHHHHHHHhccCCEEEEECCCC-CCCcccHHHHhhCCcEEEEEecCC-----------HHHHHHHHHHHHhC
Confidence            99999754 456899999999999999654 234566666778899999987543           23588899999999


Q ss_pred             CCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEeec
Q psy2961         164 KLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  201 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~~  201 (202)
                      ++++.+ ++|+++++++||+.+.  +++..+|+++.++
T Consensus       317 ~l~~~i-~~~~l~~~~~A~~~~~--~~~~~gk~v~~~~  351 (357)
T PLN02514        317 GLTSMI-EVVKMDYVNTAFERLE--KNDVRYRFVVDVA  351 (357)
T ss_pred             CCcCcE-EEEcHHHHHHHHHHHH--cCCCceeEEEEcc
Confidence            998765 6899999999999999  8888899999875

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=99.91  E-value=1.6e-22  Score=155.76  Aligned_cols=190  Identities=40%  Similarity=0.661  Sum_probs=154.5

Q ss_pred             ccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChh--HHHh-HHHhhCCC
Q psy2961           3 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRDASIP   79 (202)
Q Consensus         3 ~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~--~~~~-~~~~~~~~   79 (202)
                      .+.+.+.+|++|+|+|+++++|++++++|+.+|+++++++++++    +.+.++++|++.++++.  ++.. +.+.+.+.
T Consensus       131 ~~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  206 (323)
T cd05282         131 TEYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDE----QVEELKALGADEVIDSSPEDLAQRVKEATGGA  206 (323)
T ss_pred             HHhccCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecChH----HHHHHHhcCCCEEecccchhHHHHHHHHhcCC
Confidence            34566789999999999889999999999999999999888876    57888899999888754  4555 77777778


Q ss_pred             CCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHH
Q psy2961          80 KPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEM  159 (202)
Q Consensus        80 ~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (202)
                      ++|+++||+|+......+++++++|+++.+|........++...+..++.++.++....+.... .+....+.+.+++++
T Consensus       207 ~~d~vl~~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  285 (323)
T cd05282         207 GARLALDAVGGESATRLARSLRPGGTLVNYGLLSGEPVPFPRSVFIFKDITVRGFWLRQWLHSA-TKEAKQETFAEVIKL  285 (323)
T ss_pred             CceEEEECCCCHHHHHHHHhhCCCCEEEEEccCCCCCCCCCHHHHhhcCceEEEEEehHhhccC-CHHHHHHHHHHHHHH
Confidence            8999999999988777899999999999998654432344444444589999998877654320 125667889999999


Q ss_pred             HHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEe
Q psy2961         160 MRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYID  199 (202)
Q Consensus       160 ~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~  199 (202)
                      +.++.+.+.+.+.|+++++++||+.+.  .+...+|+|++
T Consensus       286 l~~~~l~~~~~~~~~~~~~~~a~~~~~--~~~~~~kvv~~  323 (323)
T cd05282         286 VEAGVLTTPVGAKFPLEDFEEAVAAAE--QPGRGGKVLLT  323 (323)
T ss_pred             HhCCCcccCccceecHHHHHHHHHHHh--cCCCCceEeeC
Confidence            999999887788999999999999998  77778899874

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>KOG0023|consensus

Probab=99.91  E-value=1.5e-22  Score=149.03  Aligned_cols=173  Identities=22%  Similarity=0.366  Sum_probs=143.8

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeCh---hHHHh-HHHhhCCCC
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE---EELRN-ISRDASIPK   80 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~---~~~~~-~~~~~~~~~   80 (202)
                      +.++.||++|.|.|++| +|.+++|+|+++|.+|+++.+++.+   +.+.++.||++..++.   .|..+ +...+    
T Consensus       176 ~~g~~pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~~~k---keea~~~LGAd~fv~~~~d~d~~~~~~~~~----  247 (360)
T KOG0023|consen  176 RSGLGPGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTSSKK---KEEAIKSLGADVFVDSTEDPDIMKAIMKTT----  247 (360)
T ss_pred             HcCCCCCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCCchh---HHHHHHhcCcceeEEecCCHHHHHHHHHhh----
Confidence            45778999999999995 9999999999999999999988754   6778889999988863   34444 55544    


Q ss_pred             CeEEEecCC--CchH-HHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHH
Q psy2961          81 PKLALNCVG--GNSA-TNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELT  157 (202)
Q Consensus        81 ~d~vid~~g--~~~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  157 (202)
                       |.++|++.  .... ..++.+|+++|++|++|.+.. +..++...+..+.+++.|+...+           ..+.++++
T Consensus       248 -dg~~~~v~~~a~~~~~~~~~~lk~~Gt~V~vg~p~~-~~~~~~~~lil~~~~I~GS~vG~-----------~ket~E~L  314 (360)
T KOG0023|consen  248 -DGGIDTVSNLAEHALEPLLGLLKVNGTLVLVGLPEK-PLKLDTFPLILGRKSIKGSIVGS-----------RKETQEAL  314 (360)
T ss_pred             -cCcceeeeeccccchHHHHHHhhcCCEEEEEeCcCC-cccccchhhhcccEEEEeecccc-----------HHHHHHHH
Confidence             44455544  4444 458999999999999995554 77888889999999999999775           55689999


Q ss_pred             HHHHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEeec
Q psy2961         158 EMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  201 (202)
Q Consensus       158 ~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~~  201 (202)
                      ++..++.+++++ ...+++++++||++|.  +++..+|.|+++.
T Consensus       315 df~a~~~ik~~I-E~v~~~~v~~a~erm~--kgdV~yRfVvD~s  355 (360)
T KOG0023|consen  315 DFVARGLIKSPI-ELVKLSEVNEAYERME--KGDVRYRFVVDVS  355 (360)
T ss_pred             HHHHcCCCcCce-EEEehhHHHHHHHHHH--hcCeeEEEEEEcc
Confidence            999999999874 8899999999999999  9999999999874

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=99.91  E-value=1.6e-22  Score=158.58  Aligned_cols=180  Identities=19%  Similarity=0.231  Sum_probs=135.1

Q ss_pred             ccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcccHHHHHHHHHhcCCceEeChh----HHHh-HHHhh
Q psy2961           3 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTEE----ELRN-ISRDA   76 (202)
Q Consensus         3 ~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~----~~~~-~~~~~   76 (202)
                      .+.+++++|++|||+|+ |++|++++|+|+.+|+ +|+++..+++    +++.++++|++.++++.    ++.+ +.+.+
T Consensus       178 ~~~~~~~~g~~VlV~G~-G~iG~~a~q~Ak~~G~~~Vi~~~~~~~----~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~  252 (368)
T TIGR02818       178 LNTAKVEEGDTVAVFGL-GGIGLSVIQGARMAKASRIIAIDINPA----KFELAKKLGATDCVNPNDYDKPIQEVIVEIT  252 (368)
T ss_pred             HHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHH----HHHHHHHhCCCeEEcccccchhHHHHHHHHh
Confidence            35678899999999987 5999999999999999 6777766654    68899999999988753    3455 77776


Q ss_pred             CCCCCeEEEecCCCchH-HHHHHhcccC-cEEEEEeccCC-CCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHH
Q psy2961          77 SIPKPKLALNCVGGNSA-TNLLRTLVSK-GVMVTYGGMSR-EPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMM  153 (202)
Q Consensus        77 ~~~~~d~vid~~g~~~~-~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  153 (202)
                      .+ ++|++|||+|++.. ...+++++++ |+++.+|.... ....+....++. +..+.++....+.        ....+
T Consensus       253 ~~-g~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~--------~~~~~  322 (368)
T TIGR02818       253 DG-GVDYSFECIGNVNVMRAALECCHKGWGESIIIGVAGAGQEISTRPFQLVT-GRVWRGSAFGGVK--------GRTEL  322 (368)
T ss_pred             CC-CCCEEEECCCCHHHHHHHHHHhhcCCCeEEEEeccCCCCcccccHHHHhc-cceEEEeeccCCC--------cHHHH
Confidence            64 89999999997654 4589999886 99999996532 222233333332 3446665432211        13458


Q ss_pred             HHHHHHHHcCCCCC--CcceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         154 NELTEMMRTGKLAA--PAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       154 ~~~~~~~~~g~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      .++++++.+|++++  .++++|+++++++||+.+.  +++. .|++|.|
T Consensus       323 ~~~~~~~~~g~i~~~~~it~~~~l~~~~~A~~~~~--~~~~-~k~~v~~  368 (368)
T TIGR02818       323 PGIVEQYMKGEIALDDFVTHTMPLEDINEAFDLMH--EGKS-IRTVIHY  368 (368)
T ss_pred             HHHHHHHHCCCCCchhheeEEecHHHHHHHHHHHh--CCCc-eeEEeeC
Confidence            88999999999864  4789999999999999998  6654 6999875

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=99.91  E-value=1.9e-22  Score=158.20  Aligned_cols=179  Identities=21%  Similarity=0.285  Sum_probs=135.4

Q ss_pred             ccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcccHHHHHHHHHhcCCceEeChh----HHHh-HHHhh
Q psy2961           3 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTEE----ELRN-ISRDA   76 (202)
Q Consensus         3 ~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~----~~~~-~~~~~   76 (202)
                      .+.+++++|++|||+|+ |++|++++|+|+.+|+ +++++.++++    +++.++++|++.++++.    ++.+ +.+.+
T Consensus       179 ~~~~~~~~g~~VlV~G~-G~vG~~a~~~ak~~G~~~vi~~~~~~~----~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~  253 (368)
T cd08300         179 LNTAKVEPGSTVAVFGL-GAVGLAVIQGAKAAGASRIIGIDINPD----KFELAKKFGATDCVNPKDHDKPIQQVLVEMT  253 (368)
T ss_pred             HHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHH----HHHHHHHcCCCEEEcccccchHHHHHHHHHh
Confidence            34577899999999986 5999999999999999 5777776665    68888999999999753    3556 77777


Q ss_pred             CCCCCeEEEecCCCc-hHHHHHHhcccC-cEEEEEeccCC-CCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHH
Q psy2961          77 SIPKPKLALNCVGGN-SATNLLRTLVSK-GVMVTYGGMSR-EPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMM  153 (202)
Q Consensus        77 ~~~~~d~vid~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  153 (202)
                      ++ ++|++||++|++ ....++++++++ |+++.+|.... .....+...+. ++..+.++....|..        .+.+
T Consensus       254 ~~-g~d~vid~~g~~~~~~~a~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~--------~~~~  323 (368)
T cd08300         254 DG-GVDYTFECIGNVKVMRAALEACHKGWGTSVIIGVAAAGQEISTRPFQLV-TGRVWKGTAFGGWKS--------RSQV  323 (368)
T ss_pred             CC-CCcEEEECCCChHHHHHHHHhhccCCCeEEEEccCCCCCccccCHHHHh-hcCeEEEEEecccCc--------HHHH
Confidence            65 899999999986 445689999886 99999996532 22222222222 334566655443321        3457


Q ss_pred             HHHHHHHHcCCCCCC--cceeechhhHHHHHHHHhhhcCCCCceEEEe
Q psy2961         154 NELTEMMRTGKLAAP--AHKFVTLKNFQEALMNTMSIQGKSGVKYYID  199 (202)
Q Consensus       154 ~~~~~~~~~g~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~  199 (202)
                      .++++++.+|++++.  ++++|+|+++++||+.+.  +++. .|++++
T Consensus       324 ~~~~~~~~~g~l~~~~~i~~~~~le~~~~A~~~~~--~~~~-~k~~~~  368 (368)
T cd08300         324 PKLVEDYMKGKIKVDEFITHTMPLDEINEAFDLMH--AGKS-IRTVVK  368 (368)
T ss_pred             HHHHHHHHcCCCChhhceeeeEcHHHHHHHHHHHh--CCCC-ceeeeC
Confidence            889999999999863  789999999999999998  6654 598874

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=99.90  E-value=3.2e-22  Score=157.02  Aligned_cols=179  Identities=17%  Similarity=0.232  Sum_probs=138.7

Q ss_pred             ccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcccHHHHHHHHHhcCCceEeChh----HHHh-HHHhh
Q psy2961           3 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTEE----ELRN-ISRDA   76 (202)
Q Consensus         3 ~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~----~~~~-~~~~~   76 (202)
                      .+.+++++|++|+|+|+ |++|++++|+|+..|+ +++++.++++    +.+.++++|++.++++.    ++.. +++.+
T Consensus       180 ~~~~~~~~g~~VlV~G~-g~vG~~a~q~ak~~G~~~vi~~~~~~~----~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~~  254 (369)
T cd08301         180 WNVAKVKKGSTVAIFGL-GAVGLAVAEGARIRGASRIIGVDLNPS----KFEQAKKFGVTEFVNPKDHDKPVQEVIAEMT  254 (369)
T ss_pred             HhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHH----HHHHHHHcCCceEEcccccchhHHHHHHHHh
Confidence            34577899999999987 5999999999999999 6887777765    68899999999888753    3445 66666


Q ss_pred             CCCCCeEEEecCCCchH-HHHHHhcccC-cEEEEEeccCCC-CcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHH
Q psy2961          77 SIPKPKLALNCVGGNSA-TNLLRTLVSK-GVMVTYGGMSRE-PVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMM  153 (202)
Q Consensus        77 ~~~~~d~vid~~g~~~~-~~~~~~l~~~-G~~v~~g~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  153 (202)
                      .+ ++|++|||+|+... ...+++++++ |+++.+|..... ...++...+ .+++++.|++...|..        ...+
T Consensus       255 ~~-~~d~vid~~G~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~~~~~~~~~-~~~~~i~g~~~~~~~~--------~~~~  324 (369)
T cd08301         255 GG-GVDYSFECTGNIDAMISAFECVHDGWGVTVLLGVPHKDAVFSTHPMNL-LNGRTLKGTLFGGYKP--------KTDL  324 (369)
T ss_pred             CC-CCCEEEECCCChHHHHHHHHHhhcCCCEEEEECcCCCCcccccCHHHH-hcCCeEEEEecCCCCh--------HHHH
Confidence            54 89999999998754 4588999996 999999965432 223333333 3688999987654421        3458


Q ss_pred             HHHHHHHHcCCCCCC--cceeechhhHHHHHHHHhhhcCCCCceEEEe
Q psy2961         154 NELTEMMRTGKLAAP--AHKFVTLKNFQEALMNTMSIQGKSGVKYYID  199 (202)
Q Consensus       154 ~~~~~~~~~g~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~  199 (202)
                      +++++++.+|.+++.  ++++|+++++++||+.+.  +++. .|++|.
T Consensus       325 ~~~~~~~~~g~~~~~~~i~~~~~l~~~~~A~~~~~--~~~~-~k~~~~  369 (369)
T cd08301         325 PNLVEKYMKKELELEKFITHELPFSEINKAFDLLL--KGEC-LRCILH  369 (369)
T ss_pred             HHHHHHHHcCCCCcHHheeeeecHHHHHHHHHHHH--CCCc-eeEEeC
Confidence            889999999988763  689999999999999998  7775 488873

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=99.90  E-value=6.7e-22  Score=152.41  Aligned_cols=186  Identities=19%  Similarity=0.232  Sum_probs=151.3

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChh--HHHh-HHHhhCCCC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRDASIPK   80 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~--~~~~-~~~~~~~~~   80 (202)
                      +.++++++++|+|+|+++++|++++++|+..|+++++++++++    +.+.++++|++.++++.  ++.. +.+.+.+.+
T Consensus       136 ~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  211 (324)
T cd08244         136 DLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPA----KTALVRALGADVAVDYTRPDWPDQVREALGGGG  211 (324)
T ss_pred             HhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHcCCCEEEecCCccHHHHHHHHcCCCC
Confidence            4567889999999999889999999999999999999887765    57788889998888643  4445 666666678


Q ss_pred             CeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHH
Q psy2961          81 PKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMM  160 (202)
Q Consensus        81 ~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (202)
                      +|+++|++|+......+++++++|+++.+|........++....+.+++++.++....+..     ....+.+.++++++
T Consensus       212 ~d~vl~~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l  286 (324)
T cd08244         212 VTVVLDGVGGAIGRAALALLAPGGRFLTYGWASGEWTALDEDDARRRGVTVVGLLGVQAER-----GGLRALEARALAEA  286 (324)
T ss_pred             ceEEEECCChHhHHHHHHHhccCcEEEEEecCCCCCCccCHHHHhhCCcEEEEeecccCCH-----HHHHHHHHHHHHHH
Confidence            9999999999887779999999999999986554333444445568888888877543221     34567889999999


Q ss_pred             HcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         161 RTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       161 ~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      .++.+.+.+...|+++++++||+.+.  ++...+|+++++
T Consensus       287 ~~~~l~~~~~~~~~~~~~~~a~~~~~--~~~~~~kvv~~~  324 (324)
T cd08244         287 AAGRLVPVVGQTFPLERAAEAHAALE--ARSTVGKVLLLP  324 (324)
T ss_pred             HCCCccCccceEEeHHHHHHHHHHHH--cCCCCceEEEeC
Confidence            99999877778999999999999998  888889999864

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=99.90  E-value=3.8e-22  Score=156.35  Aligned_cols=179  Identities=18%  Similarity=0.242  Sum_probs=137.6

Q ss_pred             ccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcccHHHHHHHHHhcCCceEeChh----HHHh-HHHhh
Q psy2961           3 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTEE----ELRN-ISRDA   76 (202)
Q Consensus         3 ~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~----~~~~-~~~~~   76 (202)
                      .+.+++++|++|+|+|+ |++|++++|+|+.+|+ +|+++.++++    +++.++++|++.++++.    ++.+ +.+.+
T Consensus       177 ~~~~~~~~g~~vlV~G~-g~vG~~~~~~a~~~G~~~Vi~~~~~~~----~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~  251 (365)
T cd08277         177 WNTAKVEPGSTVAVFGL-GAVGLSAIMGAKIAGASRIIGVDINED----KFEKAKEFGATDFINPKDSDKPVSEVIREMT  251 (365)
T ss_pred             HhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHH----HHHHHHHcCCCcEeccccccchHHHHHHHHh
Confidence            35577899999999986 5999999999999999 5777766654    68888999999988753    2355 66666


Q ss_pred             CCCCCeEEEecCCCchH-HHHHHhcccC-cEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHH
Q psy2961          77 SIPKPKLALNCVGGNSA-TNLLRTLVSK-GVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMN  154 (202)
Q Consensus        77 ~~~~~d~vid~~g~~~~-~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  154 (202)
                      . .++|++|||+|+... ...+++++++ |+++.+|...+...+++...++. ++++.|++...|..        ...+.
T Consensus       252 ~-~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~i~g~~~~~~~~--------~~~~~  321 (365)
T cd08277         252 G-GGVDYSFECTGNADLMNEALESTKLGWGVSVVVGVPPGAELSIRPFQLIL-GRTWKGSFFGGFKS--------RSDVP  321 (365)
T ss_pred             C-CCCCEEEECCCChHHHHHHHHhcccCCCEEEEEcCCCccccccCHhHHhh-CCEEEeeecCCCCh--------HHHHH
Confidence            6 689999999997554 5589999885 99999996543333444444543 78888877654421        33578


Q ss_pred             HHHHHHHcCCCC--CCcceeechhhHHHHHHHHhhhcCCCCceEEEe
Q psy2961         155 ELTEMMRTGKLA--APAHKFVTLKNFQEALMNTMSIQGKSGVKYYID  199 (202)
Q Consensus       155 ~~~~~~~~g~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~  199 (202)
                      ++++++.++.+.  +.++++|+++++++||+.+.  +++ ..|+++.
T Consensus       322 ~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~--~~~-~~k~~i~  365 (365)
T cd08277         322 KLVSKYMNKKFDLDELITHVLPFEEINKGFDLMK--SGE-CIRTVIT  365 (365)
T ss_pred             HHHHHHHCCCcChhHheeeEEchhhHHHHHHHHH--CCC-CceEeeC
Confidence            899999998766  45789999999999999988  666 4688873

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=99.90  E-value=2.8e-22  Score=156.36  Aligned_cols=177  Identities=18%  Similarity=0.319  Sum_probs=141.9

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcccHHHHHHHHHhcCCceEeChh--HHHh-HHHhhCCC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRDASIP   79 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~--~~~~-~~~~~~~~   79 (202)
                      ..+++++|++|+|+|+ |++|++++|+|+..|+ +++++.++++    +.+.++++|++.++++.  ++.+ +.+.+.+.
T Consensus       166 ~~~~~~~g~~vlI~g~-g~vG~~a~q~a~~~G~~~v~~~~~~~~----~~~~~~~~ga~~~i~~~~~~~~~~l~~~~~~~  240 (351)
T cd08233         166 RRSGFKPGDTALVLGA-GPIGLLTILALKAAGASKIIVSEPSEA----RRELAEELGATIVLDPTEVDVVAEVRKLTGGG  240 (351)
T ss_pred             HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHH----HHHHHHHhCCCEEECCCccCHHHHHHHHhCCC
Confidence            4567889999999986 5999999999999999 6666665554    67888889999998753  4556 77777767


Q ss_pred             CCeEEEecCCCc-hHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHH
Q psy2961          80 KPKLALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTE  158 (202)
Q Consensus        80 ~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  158 (202)
                      ++|++||++|+. .+...+++++++|+++.+|... ....++...++.+++++.+.+...           .+.++++++
T Consensus       241 ~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~i~g~~~~~-----------~~~~~~~~~  308 (351)
T cd08233         241 GVDVSFDCAGVQATLDTAIDALRPRGTAVNVAIWE-KPISFNPNDLVLKEKTLTGSICYT-----------REDFEEVID  308 (351)
T ss_pred             CCCEEEECCCCHHHHHHHHHhccCCCEEEEEccCC-CCCccCHHHHHhhCcEEEEEeccC-----------cchHHHHHH
Confidence            799999999865 4556899999999999999654 344566666778899999876431           345889999


Q ss_pred             HHHcCCCCC--CcceeechhhH-HHHHHHHhhhcCCC-CceEEEe
Q psy2961         159 MMRTGKLAA--PAHKFVTLKNF-QEALMNTMSIQGKS-GVKYYID  199 (202)
Q Consensus       159 ~~~~g~~~~--~~~~~~~~~~~-~~a~~~~~~~~~~~-~gkvv~~  199 (202)
                      ++++|++++  .++++|+++++ ++||+.+.  +++. .+|+||.
T Consensus       309 ~~~~g~l~~~~~i~~~~~l~e~~~~a~~~~~--~~~~~~~k~v~~  351 (351)
T cd08233         309 LLASGKIDAEPLITSRIPLEDIVEKGFEELI--NDKEQHVKILVS  351 (351)
T ss_pred             HHHcCCCChHHheEEEecHHHHHHHHHHHHH--hCCCCceEEEeC
Confidence            999999965  46789999996 79999998  6665 4899973

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=99.90  E-value=5.7e-22  Score=156.79  Aligned_cols=176  Identities=18%  Similarity=0.256  Sum_probs=142.8

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChh------------------
Q psy2961           6 NSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE------------------   67 (202)
Q Consensus         6 ~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~------------------   67 (202)
                      +++++|++|+|+|++|++|++++++|+.+|+++++++++++    +.+.++++|++.++++.                  
T Consensus       189 ~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~----~~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~  264 (393)
T cd08246         189 NTVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEE----KAEYCRALGAEGVINRRDFDHWGVLPDVNSEAYTA  264 (393)
T ss_pred             ccCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHH----HHHHHHHcCCCEEEcccccccccccccccchhhhh
Confidence            67899999999999889999999999999999988877665    68888999998888641                  


Q ss_pred             ------HHHh-HHHhhCCC-CCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhH
Q psy2961          68 ------ELRN-ISRDASIP-KPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRW  139 (202)
Q Consensus        68 ------~~~~-~~~~~~~~-~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  139 (202)
                            .+.. +.+.+.+. ++|++||++|+......+++++++|+++.+|........++...++.++.++.+.+... 
T Consensus       265 ~~~~~~~~~~~v~~l~~~~~g~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~l~~~~~~i~g~~~~~-  343 (393)
T cd08246         265 WTKEARRFGKAIWDILGGREDPDIVFEHPGRATFPTSVFVCDRGGMVVICAGTTGYNHTYDNRYLWMRQKRIQGSHFAN-  343 (393)
T ss_pred             hhhccchHHHHHHHHhCCCCCCeEEEECCchHhHHHHHHHhccCCEEEEEcccCCCCCCCcHHHHhhheeEEEecccCc-
Confidence                  1344 66677766 89999999998777779999999999999986544333445555667787887765432 


Q ss_pred             hhhcccHHHHHHHHHHHHHHHHcCCCCCCcceeechhhHHHHHHHHhhhcC-CCCceEEE
Q psy2961         140 QKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQG-KSGVKYYI  198 (202)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~gkvv~  198 (202)
                                .+.+..++++++++.+.+.++++|+++++++||+.+.  ++ +..||+++
T Consensus       344 ----------~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~a~~~~~--~~~~~~gkvvv  391 (393)
T cd08246         344 ----------DREAAEANRLVMKGRIDPCLSKVFSLDETPDAHQLMH--RNQHHVGNMAV  391 (393)
T ss_pred             ----------HHHHHHHHHHHHcCCceeeeeEEEeHHHHHHHHHHHH--hCccccceEEE
Confidence                      2357788999999999877788999999999999998  77 67889886

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=99.89  E-value=1.1e-21  Score=152.42  Aligned_cols=177  Identities=22%  Similarity=0.309  Sum_probs=140.5

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHh-cCCceEeCh-h-HHHh-HHHhhCCCCCeE
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS-LGADYVFTE-E-ELRN-ISRDASIPKPKL   83 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~-lg~~~v~~~-~-~~~~-~~~~~~~~~~d~   83 (202)
                      .+++++|+|.|+| ++|++++++++..|+..+++++..+   +|++.+++ .|++.+++. . +... +.+.+.+.++|+
T Consensus       166 ~~~~~~V~V~GaG-pIGLla~~~a~~~Ga~~Viv~d~~~---~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~  241 (350)
T COG1063         166 VRPGGTVVVVGAG-PIGLLAIALAKLLGASVVIVVDRSP---ERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADV  241 (350)
T ss_pred             CCCCCEEEEECCC-HHHHHHHHHHHHcCCceEEEeCCCH---HHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCE
Confidence            4555699999999 9999999999999998777775554   38999988 666766654 2 3444 777888789999


Q ss_pred             EEecCCCchHH-HHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHHHc
Q psy2961          84 ALNCVGGNSAT-NLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRT  162 (202)
Q Consensus        84 vid~~g~~~~~-~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (202)
                      +|||+|.+.+. .++++++++|+++.+|........++...++.+++++.|+...          .....++.+++++.+
T Consensus       242 vie~~G~~~~~~~ai~~~r~gG~v~~vGv~~~~~~~~~~~~~~~kel~l~gs~~~----------~~~~~~~~~~~ll~~  311 (350)
T COG1063         242 VIEAVGSPPALDQALEALRPGGTVVVVGVYGGEDIPLPAGLVVSKELTLRGSLRP----------SGREDFERALDLLAS  311 (350)
T ss_pred             EEECCCCHHHHHHHHHHhcCCCEEEEEeccCCccCccCHHHHHhcccEEEeccCC----------CCcccHHHHHHHHHc
Confidence            99999977654 4899999999999999665443256677888999999998431          113459999999999


Q ss_pred             CCCCCC--cceeechhhHHHHHHHHhhhcCC-CCceEEEee
Q psy2961         163 GKLAAP--AHKFVTLKNFQEALMNTMSIQGK-SGVKYYIDF  200 (202)
Q Consensus       163 g~~~~~--~~~~~~~~~~~~a~~~~~~~~~~-~~gkvv~~~  200 (202)
                      |++.+.  +++.++++++++||+.+.  ++. ...|+++.+
T Consensus       312 g~i~~~~lit~~~~~~~~~~a~~~~~--~~~~~~~Kv~i~~  350 (350)
T COG1063         312 GKIDPEKLITHRLPLDDAAEAYELFA--DRKEEAIKVVLKP  350 (350)
T ss_pred             CCCChhHceEeeccHHHHHHHHHHHH--hcCCCeEEEEecC
Confidence            999975  578999999999999998  533 366998864

>KOG1196|consensus

Probab=99.89  E-value=4e-22  Score=145.41  Aligned_cols=187  Identities=21%  Similarity=0.286  Sum_probs=155.7

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHH-hcCCceEeChh---HHHh-HHHhh
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK-SLGADYVFTEE---ELRN-ISRDA   76 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~-~lg~~~v~~~~---~~~~-~~~~~   76 (202)
                      +++++.++.|++|+|.||+|++|+++.|+|+.+|++|++.+++++    +.+.++ ++|.+..+||+   ++.+ +++ +
T Consensus       145 f~ei~~pk~geTv~VSaAsGAvGql~GQ~Ak~~Gc~VVGsaGS~E----Kv~ll~~~~G~d~afNYK~e~~~~~aL~r-~  219 (343)
T KOG1196|consen  145 FYEICSPKKGETVFVSAASGAVGQLVGQFAKLMGCYVVGSAGSKE----KVDLLKTKFGFDDAFNYKEESDLSAALKR-C  219 (343)
T ss_pred             HHHhcCCCCCCEEEEeeccchhHHHHHHHHHhcCCEEEEecCChh----hhhhhHhccCCccceeccCccCHHHHHHH-h
Confidence            457788999999999999999999999999999999999999987    678885 57999999874   4555 555 4


Q ss_pred             CCCCCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCc--CC---CcccccccCeeEEEEechhHhhhcccHHHHHH
Q psy2961          77 SIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPV--QI---PTSAFIFKDITLRGHWMTRWQKENKESAERKS  151 (202)
Q Consensus        77 ~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~--~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  151 (202)
                      ...++|+.||.+|+......+..|+..||++.+|....-+.  +.   +....+.+.+.+.|+....+.      ..+.+
T Consensus       220 ~P~GIDiYfeNVGG~~lDavl~nM~~~gri~~CG~ISqYN~~~~~~~~~l~~ii~Kr~~iqgflv~d~~------d~~~k  293 (343)
T KOG1196|consen  220 FPEGIDIYFENVGGKMLDAVLLNMNLHGRIAVCGMISQYNLENPEGLHNLSTIIYKRIRIQGFLVSDYL------DKYPK  293 (343)
T ss_pred             CCCcceEEEeccCcHHHHHHHHhhhhccceEeeeeehhccccCCccccchhhheeeeEEeeeEEeechh------hhhHH
Confidence            45799999999999999999999999999999996653221  11   234567788999997766544      34577


Q ss_pred             HHHHHHHHHHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEeec
Q psy2961         152 MMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  201 (202)
Q Consensus       152 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~~  201 (202)
                      .++.+..++++|+|+..-+-.-.||+.++||.-+.  .+...||.++.+.
T Consensus       294 ~ld~l~~~ikegKI~y~edi~~Glen~P~A~vglf--~GkNvGKqiv~va  341 (343)
T KOG1196|consen  294 FLDFLLPYIKEGKITYVEDIADGLENGPSALVGLF--HGKNVGKQLVKVA  341 (343)
T ss_pred             HHHHHHHHHhcCceEEehhHHHHHhccHHHHHHHh--ccCcccceEEEee
Confidence            89999999999999987666777999999999999  8999999999875

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=99.89  E-value=1.6e-21  Score=154.37  Aligned_cols=180  Identities=17%  Similarity=0.248  Sum_probs=144.7

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhH----------------
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE----------------   68 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~----------------   68 (202)
                      .+++.+|++|+|+|++|++|++++|+|+..|+++++++++++    +.+.++++|++.++|+++                
T Consensus       184 ~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~~~~~----~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~  259 (398)
T TIGR01751       184 PATVKPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVVSSPE----KAEYCRELGAEAVIDRNDFGHWGRLPDLNTQAPK  259 (398)
T ss_pred             ccCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEcCCHH----HHHHHHHcCCCEEecCCCcchhhccccccccccc
Confidence            467889999999999889999999999999999888876654    678888999998887532                


Q ss_pred             --------HHh-HHHhhCCCCCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhH
Q psy2961          69 --------LRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRW  139 (202)
Q Consensus        69 --------~~~-~~~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  139 (202)
                              +.. +.+.+.+.++|++|||+|+......+++++++|+++.+|........++...++.++.++.+..... 
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~g~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  338 (398)
T TIGR01751       260 EWTKSFKRFGKRIRELTGGEDPDIVFEHPGRATFPTSVFVCRRGGMVVICGGTTGYNHDYDNRYLWMRQKRIQGSHFAN-  338 (398)
T ss_pred             hhhhcchhHHHHHHHHcCCCCceEEEECCcHHHHHHHHHhhccCCEEEEEccccCCCCCcCHHHHhhcccEEEccccCc-
Confidence                    233 5556666789999999998766678999999999999996654434445555556677777765432 


Q ss_pred             hhhcccHHHHHHHHHHHHHHHHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEeec
Q psy2961         140 QKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  201 (202)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~~  201 (202)
                                .+.++++++++.++++.+.+++++++++++++|+.+.  ++...+|+|+.+.
T Consensus       339 ----------~~~~~~~~~~l~~~~l~~~~~~~~~l~~~~~a~~~~~--~~~~~gkvvv~~~  388 (398)
T TIGR01751       339 ----------LREAWEANRLVAKGRIDPTLSKVYPLEEIGQAHQDVH--RNHHQGNVAVLVL  388 (398)
T ss_pred             ----------HHHHHHHHHHHHCCCcccceeeEEcHHHHHHHHHHHH--cCCCCceEEEEeC
Confidence                      2336788899999999987889999999999999998  8888899999875

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>KOG0022|consensus

Probab=99.89  E-value=2.2e-21  Score=142.47  Aligned_cols=178  Identities=19%  Similarity=0.210  Sum_probs=143.5

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcE-EEEecCcccHHHHHHHHHhcCCceEeChhH----HHh-HHHhhC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKT-INIVRNRDDIDKLKSYLKSLGADYVFTEEE----LRN-ISRDAS   77 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~v-i~~~~~~~~~~~~~~~~~~lg~~~v~~~~~----~~~-~~~~~~   77 (202)
                      +.++++||++|.|+|.| ++|++++|-|+..||.. |++.-+++    +.+.++++|++.++|+.|    ..+ +.+.|+
T Consensus       186 ~~Akv~~GstvAVfGLG-~VGLav~~Gaka~GAsrIIgvDiN~~----Kf~~ak~fGaTe~iNp~d~~~~i~evi~EmTd  260 (375)
T KOG0022|consen  186 NTAKVEPGSTVAVFGLG-GVGLAVAMGAKAAGASRIIGVDINPD----KFEKAKEFGATEFINPKDLKKPIQEVIIEMTD  260 (375)
T ss_pred             hhcccCCCCEEEEEecc-hHHHHHHHhHHhcCcccEEEEecCHH----HHHHHHhcCcceecChhhccccHHHHHHHHhc
Confidence            56889999999999999 99999999999999955 55554544    799999999999999764    445 777787


Q ss_pred             CCCCeEEEecCCCchHHH-HHHhcccC-cEEEEEeccCCC-CcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHH
Q psy2961          78 IPKPKLALNCVGGNSATN-LLRTLVSK-GVMVTYGGMSRE-PVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMN  154 (202)
Q Consensus        78 ~~~~d~vid~~g~~~~~~-~~~~l~~~-G~~v~~g~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  154 (202)
                       .|+|+-|||+|...... ++.+...| |+-|.+|..... ..++.+..+ ..+.++.|.....|..        +..+.
T Consensus       261 -gGvDysfEc~G~~~~m~~al~s~h~GwG~sv~iGv~~~~~~i~~~p~~l-~~GR~~~Gs~FGG~K~--------~~~iP  330 (375)
T KOG0022|consen  261 -GGVDYSFECIGNVSTMRAALESCHKGWGKSVVIGVAAAGQEISTRPFQL-VTGRTWKGSAFGGFKS--------KSDIP  330 (375)
T ss_pred             -CCceEEEEecCCHHHHHHHHHHhhcCCCeEEEEEecCCCcccccchhhh-ccccEEEEEecccccc--------hhhhh
Confidence             79999999999998765 77777777 999999954433 334445445 4577888888777654        55688


Q ss_pred             HHHHHHHcCCCCCC--cceeechhhHHHHHHHHhhhcCCCCceEEEe
Q psy2961         155 ELTEMMRTGKLAAP--AHKFVTLKNFQEALMNTMSIQGKSGVKYYID  199 (202)
Q Consensus       155 ~~~~~~~~g~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~  199 (202)
                      .+++.+.++++...  +++++|++++++||+.+.  +++.. |.|+.
T Consensus       331 ~lV~~y~~~~l~ld~~ITh~l~f~~In~AF~ll~--~Gksi-R~vl~  374 (375)
T KOG0022|consen  331 KLVKDYMKKKLNLDEFITHELPFEEINKAFDLLH--EGKSI-RCVLW  374 (375)
T ss_pred             HHHHHHHhCccchhhhhhcccCHHHHHHHHHHHh--CCceE-EEEEe
Confidence            99999999988864  899999999999999999  77765 77765

>cd08230 glucose_DH Glucose dehydrogenase

Probab=99.89  E-value=9e-22  Score=153.71  Aligned_cols=175  Identities=20%  Similarity=0.275  Sum_probs=128.4

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEe
Q psy2961           7 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALN   86 (202)
Q Consensus         7 ~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid   86 (202)
                      ++++|++|+|+|+ |++|++++|+|+..|++++++.+++. .+++++.++++|++.+ ++.+. +..+.....++|+|||
T Consensus       169 ~~~~g~~vlI~G~-G~vG~~a~q~ak~~G~~vi~~~~~~~-~~~~~~~~~~~Ga~~v-~~~~~-~~~~~~~~~~~d~vid  244 (355)
T cd08230         169 PTWNPRRALVLGA-GPIGLLAALLLRLRGFEVYVLNRRDP-PDPKADIVEELGATYV-NSSKT-PVAEVKLVGEFDLIIE  244 (355)
T ss_pred             ccCCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEecCCC-CHHHHHHHHHcCCEEe-cCCcc-chhhhhhcCCCCEEEE
Confidence            3678999999997 59999999999999999888876321 1237889999999875 43221 1111111357999999


Q ss_pred             cCCCch-HHHHHHhcccCcEEEEEeccCC-CCcCCC----cccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHH
Q psy2961          87 CVGGNS-ATNLLRTLVSKGVMVTYGGMSR-EPVQIP----TSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMM  160 (202)
Q Consensus        87 ~~g~~~-~~~~~~~l~~~G~~v~~g~~~~-~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (202)
                      |+|++. +...+++++++|+++.+|.... ....++    ...++.+++++.|+....           .+.++++++++
T Consensus       245 ~~g~~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~~-----------~~~~~~~~~~l  313 (355)
T cd08230         245 ATGVPPLAFEALPALAPNGVVILFGVPGGGREFEVDGGELNRDLVLGNKALVGSVNAN-----------KRHFEQAVEDL  313 (355)
T ss_pred             CcCCHHHHHHHHHHccCCcEEEEEecCCCCCccccChhhhhhhHhhcCcEEEEecCCc-----------hhhHHHHHHHH
Confidence            999865 4568999999999999996654 233344    245677899999976432           23466777777


Q ss_pred             HcCC------CCCCcceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         161 RTGK------LAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       161 ~~g~------~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      .++.      +++.++++|+++++++||+.+.  ++.  +|+||+|
T Consensus       314 ~~~~~~~~~~~~~~i~~~~~l~~~~~a~~~~~--~~~--~K~v~~~  355 (355)
T cd08230         314 AQWKYRWPGVLERLITRRVPLEEFAEALTEKP--DGE--IKVVIEW  355 (355)
T ss_pred             HhcccccccchHHheeeeecHHHHHHHHHhcc--cCC--eEEEeeC
Confidence            7665      5556789999999999999876  544  5999975

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=99.89  E-value=2.2e-21  Score=153.06  Aligned_cols=179  Identities=17%  Similarity=0.186  Sum_probs=130.6

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeCh--hHHHh-HHHhhCCCCC
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE--EELRN-ISRDASIPKP   81 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~--~~~~~-~~~~~~~~~~   81 (202)
                      ++++++|++|+|.|++ ++|++++|+|+.+|++++++++..+   ++++.++++|++.+...  .++.+ +.+.+.+.++
T Consensus       180 ~~~~~~g~~VlV~G~G-~iG~~aiqlAk~~Ga~~vi~~d~~~---~r~~~a~~~Ga~~v~~~~~~~~~~~v~~~~~~~g~  255 (393)
T TIGR02819       180 TAGVGPGSTVYIAGAG-PVGLAAAASAQLLGAAVVIVGDLNP---ARLAQARSFGCETVDLSKDATLPEQIEQILGEPEV  255 (393)
T ss_pred             hcCCCCCCEEEEECCC-HHHHHHHHHHHHcCCceEEEeCCCH---HHHHHHHHcCCeEEecCCcccHHHHHHHHcCCCCC
Confidence            3678999999997765 9999999999999998776654433   37899999999854432  24556 7777777789


Q ss_pred             eEEEecCCCc---------------hHHHHHHhcccCcEEEEEeccCC-CCcCCC-----------cccccccCeeEEEE
Q psy2961          82 KLALNCVGGN---------------SATNLLRTLVSKGVMVTYGGMSR-EPVQIP-----------TSAFIFKDITLRGH  134 (202)
Q Consensus        82 d~vid~~g~~---------------~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~-----------~~~~~~~~~~~~g~  134 (202)
                      |++||++|.+               .+..++++++++|+++.+|.... ....++           ....+.+++++.+.
T Consensus       256 Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~g~  335 (393)
T TIGR02819       256 DCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLYVTEDPGAVDAAAKTGSLSIRFGLGWAKSHSFHTG  335 (393)
T ss_pred             cEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeecCCcccccccccccccccccchHHhhccCceEEec
Confidence            9999999986               35568999999999999997532 221111           22223344444442


Q ss_pred             echhHhhhcccHHHHHHHHHHHHHHHHcCCCCCC--cc-eeechhhHHHHHHHHhhhcCCCCceEEEeec
Q psy2961         135 WMTRWQKENKESAERKSMMNELTEMMRTGKLAAP--AH-KFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  201 (202)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~-~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~~  201 (202)
                      ..           ...+.+.++++++.+|++++.  ++ ++|+|+++++||+.+.  +++ .+|+++.++
T Consensus       336 ~~-----------~~~~~~~~~~~~~~~g~i~~~~~i~~~~~~l~~~~~a~~~~~--~~~-~~Kvvi~~~  391 (393)
T TIGR02819       336 QT-----------PVMKYNRNLMQAILHDRVQIAKAVNVTVISLDDAPEGYAEFD--AGA-AKKFVIDPH  391 (393)
T ss_pred             cC-----------ChhhhHHHHHHHHHcCCCCHHHceecceecHHHHHHHHHHHh--hCC-ceEEEEeCC
Confidence            11           112334678999999999863  55 7899999999999998  664 589999864

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=99.89  E-value=4.1e-21  Score=148.59  Aligned_cols=192  Identities=20%  Similarity=0.248  Sum_probs=149.5

Q ss_pred             ccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChh--H-HHh-HHHhhCC
Q psy2961           3 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE--E-LRN-ISRDASI   78 (202)
Q Consensus         3 ~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~--~-~~~-~~~~~~~   78 (202)
                      .+.+.+++|++|+|+|+++++|++++++|+..|++++.++++++    +.+.++++|.+.++++.  + +.. +...+.+
T Consensus       133 ~~~~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  208 (334)
T PTZ00354        133 KKHGDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEE----KVDFCKKLAAIILIRYPDEEGFAPKVKKLTGE  208 (334)
T ss_pred             HHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHcCCcEEEecCChhHHHHHHHHHhCC
Confidence            34567889999999999889999999999999999888776665    67888889998888653  2 555 7777767


Q ss_pred             CCCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcC-CCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHH
Q psy2961          79 PKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQ-IPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELT  157 (202)
Q Consensus        79 ~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  157 (202)
                      .++|+++|++++......+++++++|+++.++...+.... ++...++.+..++.++.......... +....+.++++.
T Consensus       209 ~~~d~~i~~~~~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  287 (334)
T PTZ00354        209 KGVNLVLDCVGGSYLSETAEVLAVDGKWIVYGFMGGAKVEKFNLLPLLRKRASIIFSTLRSRSDEYK-ADLVASFEREVL  287 (334)
T ss_pred             CCceEEEECCchHHHHHHHHHhccCCeEEEEecCCCCcccccCHHHHHhhCCEEEeeeccccchhhh-HHHHHHHHHHHH
Confidence            7899999999988777799999999999999855433322 45445556777888766443211111 133456678889


Q ss_pred             HHHHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEeec
Q psy2961         158 EMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  201 (202)
Q Consensus       158 ~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~~  201 (202)
                      +++.++.+.+.+.+.+++++++++++.+.  .++..+|+|+.+.
T Consensus       288 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~kvvv~~~  329 (334)
T PTZ00354        288 PYMEEGEIKPIVDRTYPLEEVAEAHTFLE--QNKNIGKVVLTVN  329 (334)
T ss_pred             HHHHCCCccCccccEEcHHHHHHHHHHHH--hCCCCceEEEecC
Confidence            99999999887778999999999999998  7777889999874

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=99.89  E-value=1.9e-21  Score=149.00  Aligned_cols=163  Identities=17%  Similarity=0.155  Sum_probs=124.8

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCV   88 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~   88 (202)
                      .++++|+|+|+| ++|++++|+|+.+|++++++++..+.   +++.+.+   ..++++.+.       .+.++|++|||+
T Consensus       143 ~~~~~vlV~G~G-~vG~~a~q~ak~~G~~~v~~~~~~~~---rl~~a~~---~~~i~~~~~-------~~~g~Dvvid~~  208 (308)
T TIGR01202       143 VKVLPDLIVGHG-TLGRLLARLTKAAGGSPPAVWETNPR---RRDGATG---YEVLDPEKD-------PRRDYRAIYDAS  208 (308)
T ss_pred             cCCCcEEEECCC-HHHHHHHHHHHHcCCceEEEeCCCHH---HHHhhhh---ccccChhhc-------cCCCCCEEEECC
Confidence            468899999875 99999999999999997776655432   4444443   344554321       235799999999


Q ss_pred             CCchH-HHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHHHcCCCCC
Q psy2961          89 GGNSA-TNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAA  167 (202)
Q Consensus        89 g~~~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  167 (202)
                      |++.. ..++++++++|+++.+|... .+..++...++.+++++.++....           .+.++++++++++|++.+
T Consensus       209 G~~~~~~~~~~~l~~~G~iv~~G~~~-~~~~~~~~~~~~~~~~i~~~~~~~-----------~~~~~~~~~l~~~g~i~~  276 (308)
T TIGR01202       209 GDPSLIDTLVRRLAKGGEIVLAGFYT-EPVNFDFVPAFMKEARLRIAAEWQ-----------PGDLHAVRELIESGALSL  276 (308)
T ss_pred             CCHHHHHHHHHhhhcCcEEEEEeecC-CCcccccchhhhcceEEEEecccc-----------hhHHHHHHHHHHcCCCCh
Confidence            99764 56899999999999999643 334566667778888888765321           355899999999999987


Q ss_pred             --CcceeechhhHHHHHHHHhhhcCCCCceEEEe
Q psy2961         168 --PAHKFVTLKNFQEALMNTMSIQGKSGVKYYID  199 (202)
Q Consensus       168 --~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~  199 (202)
                        .++++||++++++||+.+.  ++...+|++++
T Consensus       277 ~~~it~~~~l~~~~~A~~~~~--~~~~~~Kv~~~  308 (308)
T TIGR01202       277 DGLITHQRPASDAAEAYMTAF--SDPDCLKMILD  308 (308)
T ss_pred             hhccceeecHHHHHHHHHHHh--cCcCceEEEeC
Confidence              4789999999999999887  66667899874

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.88  E-value=4.6e-21  Score=149.33  Aligned_cols=178  Identities=22%  Similarity=0.352  Sum_probs=141.6

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhH--HHhHHHhhCCCCC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE--LRNISRDASIPKP   81 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~--~~~~~~~~~~~~~   81 (202)
                      +.+++++|++|+|+|++|++|++++++|+.+|++++++++++     +++.++++|++.+++..+  ... ...+.+.++
T Consensus       171 ~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~  244 (350)
T cd08274         171 ERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-----KEEAVRALGADTVILRDAPLLAD-AKALGGEPV  244 (350)
T ss_pred             hhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-----hhHHHHhcCCeEEEeCCCccHHH-HHhhCCCCC
Confidence            456788999999999988999999999999999998887543     467888899876654322  222 233455789


Q ss_pred             eEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHHH
Q psy2961          82 KLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMR  161 (202)
Q Consensus        82 d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (202)
                      |++||++|++.....+++++++|+++.+|........++...++.+++++.++....           .+.+.++++++.
T Consensus       245 d~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~  313 (350)
T cd08274         245 DVVADVVGGPLFPDLLRLLRPGGRYVTAGAIAGPVVELDLRTLYLKDLTLFGSTLGT-----------REVFRRLVRYIE  313 (350)
T ss_pred             cEEEecCCHHHHHHHHHHhccCCEEEEecccCCccccCCHHHhhhcceEEEEeecCC-----------HHHHHHHHHHHH
Confidence            999999998877779999999999999986533223455556678888888877431           456888999999


Q ss_pred             cCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         162 TGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       162 ~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      ++++.+.+.++++++++++||+.+.  .+...+|+|+++
T Consensus       314 ~~~l~~~~~~~~~~~~~~~a~~~~~--~~~~~~kvvi~~  350 (350)
T cd08274         314 EGEIRPVVAKTFPLSEIREAQAEFL--EKRHVGKLVLVP  350 (350)
T ss_pred             CCCcccccccccCHHHHHHHHHHHh--cCCCceEEEEeC
Confidence            9999887789999999999999998  777788999853

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=99.88  E-value=1.5e-20  Score=144.05  Aligned_cols=188  Identities=19%  Similarity=0.226  Sum_probs=148.6

Q ss_pred             ccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChh--HHHh-HHHhhCCC
Q psy2961           3 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRDASIP   79 (202)
Q Consensus         3 ~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~--~~~~-~~~~~~~~   79 (202)
                      ++.+++.+|++|+|+|+.+++|++++++|+.+|+++++++++++    +.+.++++|++.+++..  ++.. +...+.+.
T Consensus       129 ~~~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  204 (320)
T cd05286         129 RETYPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEE----KAELARAAGADHVINYRDEDFVERVREITGGR  204 (320)
T ss_pred             HHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHH----HHHHHHHCCCCEEEeCCchhHHHHHHHHcCCC
Confidence            45677889999999998889999999999999999999887665    57888889998888643  4555 77777667


Q ss_pred             CCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHH
Q psy2961          80 KPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEM  159 (202)
Q Consensus        80 ~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (202)
                      ++|+++||+++......+++++++|+++.+|........++...+..+++++.+.....+. .  .+....+.+.++.++
T Consensus       205 ~~d~vl~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~  281 (320)
T cd05286         205 GVDVVYDGVGKDTFEGSLDSLRPRGTLVSFGNASGPVPPFDLLRLSKGSLFLTRPSLFHYI-A--TREELLARAAELFDA  281 (320)
T ss_pred             CeeEEEECCCcHhHHHHHHhhccCcEEEEEecCCCCCCccCHHHHHhcCcEEEEEehhhhc-C--CHHHHHHHHHHHHHH
Confidence            8999999999877677899999999999998554332233333334778888766544332 1  224566778899999


Q ss_pred             HHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEe
Q psy2961         160 MRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYID  199 (202)
Q Consensus       160 ~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~  199 (202)
                      +.++.+.+.+.+.|+++++++||+.+.  .+...+|++++
T Consensus       282 ~~~~~l~~~~~~~~~~~~~~~a~~~~~--~~~~~~~vv~~  319 (320)
T cd05286         282 VASGKLKVEIGKRYPLADAAQAHRDLE--SRKTTGKLLLI  319 (320)
T ss_pred             HHCCCCcCcccceEcHHHHHHHHHHHH--cCCCCceEEEe
Confidence            999999887778999999999999998  77778899875

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=99.88  E-value=1.8e-20  Score=144.57  Aligned_cols=179  Identities=22%  Similarity=0.328  Sum_probs=138.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhCCCCCeEEEecC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNCV   88 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~~~~~d~vid~~   88 (202)
                      .+++|+|+|++|++|++++|+|+..|+++++++++++    +++.++++|++.++++.+... ......+.++|+++||+
T Consensus       146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~  221 (325)
T cd05280         146 EDGPVLVTGATGGVGSIAVAILAKLGYTVVALTGKEE----QADYLKSLGASEVLDREDLLDESKKPLLKARWAGAIDTV  221 (325)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHhcCCcEEEcchhHHHHHHHHhcCCCccEEEECC
Confidence            3579999999889999999999999999888887765    678889999999887655433 33444445799999999


Q ss_pred             CCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHHHcCCCCCC
Q psy2961          89 GGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAP  168 (202)
Q Consensus        89 g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  168 (202)
                      |++.....+++++++|+++.+|........++...++.+++++.+........     ....+.++.+.+++..+ +.+.
T Consensus       222 ~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~  295 (325)
T cd05280         222 GGDVLANLLKQTKYGGVVASCGNAAGPELTTTVLPFILRGVSLLGIDSVNCPM-----ELRKQVWQKLATEWKPD-LLEI  295 (325)
T ss_pred             chHHHHHHHHhhcCCCEEEEEecCCCCccccccchheeeeeEEEEEEeecCch-----hHHHHHHHHHHHHHhcC-Cccc
Confidence            99877789999999999999996543333444445557888888876543211     23346677777777777 4445


Q ss_pred             cceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         169 AHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       169 ~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      +..+|+++++++|++.+.  .++..||+|+++
T Consensus       296 ~~~~~~~~~~~~a~~~~~--~~~~~gk~vv~~  325 (325)
T cd05280         296 VVREISLEELPEAIDRLL--AGKHRGRTVVKI  325 (325)
T ss_pred             eeeEecHHHHHHHHHHHh--cCCcceEEEEeC
Confidence            778999999999999999  888889999863

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=99.87  E-value=1.8e-20  Score=144.45  Aligned_cols=182  Identities=24%  Similarity=0.336  Sum_probs=141.0

Q ss_pred             cCCCCCC-EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhCCCCCeE
Q psy2961           6 NSLSPGD-VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKL   83 (202)
Q Consensus         6 ~~~~~g~-~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~~~~~d~   83 (202)
                      +.+.+|+ +|+|+|++|++|++++|+|+.+|+++++++++++    +.+.++++|++.+++..+... +..... .++|+
T Consensus       140 ~~~~~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~d~  214 (323)
T TIGR02823       140 NGLTPEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGKAE----EEDYLKELGASEVIDREDLSPPGKPLEK-ERWAG  214 (323)
T ss_pred             cCCCCCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCCHH----HHHHHHhcCCcEEEccccHHHHHHHhcC-CCceE
Confidence            3478898 9999999889999999999999999998887775    468888999988887654333 444443 35999


Q ss_pred             EEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHHHcC
Q psy2961          84 ALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTG  163 (202)
Q Consensus        84 vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  163 (202)
                      ++||+|++.....+++++++|+++.+|........++...++.+++++.+........     ....+.+..+.+++..+
T Consensus       215 vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~  289 (323)
T TIGR02823       215 AVDTVGGHTLANVLAQLKYGGAVAACGLAGGPDLPTTVLPFILRGVSLLGIDSVYCPM-----ALREAAWQRLATDLKPR  289 (323)
T ss_pred             EEECccHHHHHHHHHHhCCCCEEEEEcccCCCCccccHHHHhhcceEEEEEeccccCc-----hhHHHHHHHHHHHhhcC
Confidence            9999998877779999999999999996643333333345557888988876432111     22345677788888888


Q ss_pred             CCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         164 KLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      .+.+. ...++++++++||+.+.  +++..+|+|+++
T Consensus       290 ~~~~~-~~~~~l~~~~~a~~~~~--~~~~~~k~vv~~  323 (323)
T TIGR02823       290 NLESI-TREITLEELPEALEQIL--AGQHRGRTVVDV  323 (323)
T ss_pred             CCcCc-eeeecHHHHHHHHHHHh--CCCccceEEEeC
Confidence            88764 56899999999999999  888889999863

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=99.87  E-value=2.1e-20  Score=144.24  Aligned_cols=180  Identities=24%  Similarity=0.317  Sum_probs=134.6

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHH-Hh-HHHhhCCCCCeEEEe
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEEL-RN-ISRDASIPKPKLALN   86 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~-~~-~~~~~~~~~~d~vid   86 (202)
                      ..+++|+|+|++|++|++++|+|+..|+++++++++++    +.+.++++|++.++++.+. .. +.... +.++|+++|
T Consensus       145 ~~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~----~~~~~~~~g~~~v~~~~~~~~~~~~~~~-~~~~d~vld  219 (326)
T cd08289         145 PEQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKAD----AADYLKKLGAKEVIPREELQEESIKPLE-KQRWAGAVD  219 (326)
T ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHH----HHHHHHHcCCCEEEcchhHHHHHHHhhc-cCCcCEEEE
Confidence            34789999999889999999999999999999888876    6788899999988876543 33 55543 467999999


Q ss_pred             cCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHHHcCCCC
Q psy2961          87 CVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLA  166 (202)
Q Consensus        87 ~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  166 (202)
                      |+|+......+++++++|+++.+|.........+...++.+++++.++.......     ....+.+..+...+..+.+.
T Consensus       220 ~~g~~~~~~~~~~l~~~G~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~  294 (326)
T cd08289         220 PVGGKTLAYLLSTLQYGGSVAVSGLTGGGEVETTVFPFILRGVNLLGIDSVECPM-----ELRRRIWRRLATDLKPTQLL  294 (326)
T ss_pred             CCcHHHHHHHHHHhhcCCEEEEEeecCCCCCCcchhhhhhccceEEEEEeEecCc-----hHHHHHHHHHHhhcCccccc
Confidence            9998777779999999999999996543333333455668889988875321100     11233444554444333344


Q ss_pred             CCcceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         167 APAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       167 ~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      +.+.++++++++++||+.+.  +++..+|+|+++
T Consensus       295 ~~~~~~~~l~~~~~a~~~~~--~~~~~gkvvv~~  326 (326)
T cd08289         295 NEIKQEITLDELPEALKQIL--QGRVTGRTVVKL  326 (326)
T ss_pred             cccceEeeHHHHHHHHHHHh--cCcccceEEEeC
Confidence            45689999999999999999  888889999864

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=99.87  E-value=1.8e-20  Score=144.76  Aligned_cols=188  Identities=18%  Similarity=0.185  Sum_probs=140.8

Q ss_pred             ccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeCh--hHHHh-HHHhhCCC
Q psy2961           3 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE--EELRN-ISRDASIP   79 (202)
Q Consensus         3 ~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~--~~~~~-~~~~~~~~   79 (202)
                      .+.+++++|++|+|+|+.+++|++++|+|+..|+++++++++++    +.+.++++|++.+++.  .++.+ +.+.+.+.
T Consensus       133 ~~~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  208 (327)
T PRK10754        133 RKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGSAQ----KAQRAKKAGAWQVINYREENIVERVKEITGGK  208 (327)
T ss_pred             HhhcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHCCCCEEEcCCCCcHHHHHHHHcCCC
Confidence            34577899999999998889999999999999999998887765    5788888999888864  34556 77777778


Q ss_pred             CCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeE-EEEechhHhhhcccHHHHHHHHHHHHH
Q psy2961          80 KPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITL-RGHWMTRWQKENKESAERKSMMNELTE  158 (202)
Q Consensus        80 ~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~  158 (202)
                      ++|+++||+|+......+++++++|+++.+|........++...+..++..+ .......+.   ..+....+.+.++++
T Consensus       209 ~~d~vl~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  285 (327)
T PRK10754        209 KVRVVYDSVGKDTWEASLDCLQRRGLMVSFGNASGPVTGVNLGILNQKGSLYVTRPSLQGYI---TTREELTEASNELFS  285 (327)
T ss_pred             CeEEEEECCcHHHHHHHHHHhccCCEEEEEccCCCCCCCcCHHHHhccCceEEecceeeccc---CCHHHHHHHHHHHHH
Confidence            8999999999887777999999999999998654321122222222222111 111111110   112455667888999


Q ss_pred             HHHcCCCCCC--cceeechhhHHHHHHHHhhhcCCCCceEEEe
Q psy2961         159 MMRTGKLAAP--AHKFVTLKNFQEALMNTMSIQGKSGVKYYID  199 (202)
Q Consensus       159 ~~~~g~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~  199 (202)
                      ++.+|.+.+.  +.++|++++++++++.+.  .+...+|+|++
T Consensus       286 ~l~~g~l~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~~~~~~  326 (327)
T PRK10754        286 LIASGVIKVDVAEQQKFPLKDAQRAHEILE--SRATQGSSLLI  326 (327)
T ss_pred             HHHCCCeeeecccCcEEcHHHHHHHHHHHH--cCCCcceEEEe
Confidence            9999999864  468999999999999998  88888999986

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=99.87  E-value=6.5e-21  Score=149.19  Aligned_cols=178  Identities=20%  Similarity=0.252  Sum_probs=133.5

Q ss_pred             ccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcccHHHHHHHHHhcCCceEeChhH-----HHh-HHHh
Q psy2961           3 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTEEE-----LRN-ISRD   75 (202)
Q Consensus         3 ~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~-----~~~-~~~~   75 (202)
                      .+....++|++|||+|+ |++|++++|+|+..|+ ++++++++++    +.+.++++|++.++++.+     +.. +.+.
T Consensus       170 ~~~~~~~~g~~vlI~g~-g~vG~~~~~lak~~G~~~v~~~~~~~~----~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~  244 (361)
T cd08231         170 DRAGPVGAGDTVVVQGA-GPLGLYAVAAAKLAGARRVIVIDGSPE----RLELAREFGADATIDIDELPDPQRRAIVRDI  244 (361)
T ss_pred             HhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHH----HHHHHHHcCCCeEEcCcccccHHHHHHHHHH
Confidence            34445569999999986 5999999999999999 7877776654    678889999998886432     224 6777


Q ss_pred             hCCCCCeEEEecCCCch-HHHHHHhcccCcEEEEEeccCC-CCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHH
Q psy2961          76 ASIPKPKLALNCVGGNS-ATNLLRTLVSKGVMVTYGGMSR-EPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMM  153 (202)
Q Consensus        76 ~~~~~~d~vid~~g~~~-~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  153 (202)
                      +++.++|++|||+|+.. ....+++++++|+++.+|.... ....++...++.+++++.+++...           .+.+
T Consensus       245 ~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~  313 (361)
T cd08231         245 TGGRGADVVIEASGHPAAVPEGLELLRRGGTYVLVGSVAPAGTVPLDPERIVRKNLTIIGVHNYD-----------PSHL  313 (361)
T ss_pred             hCCCCCcEEEECCCChHHHHHHHHHhccCCEEEEEcCCCCCCccccCHHHHhhcccEEEEcccCC-----------chhH
Confidence            77778999999998754 4568999999999999986542 122344444578899998886432           2235


Q ss_pred             HHHHHHHHcC----CCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEe
Q psy2961         154 NELTEMMRTG----KLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYID  199 (202)
Q Consensus       154 ~~~~~~~~~g----~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~  199 (202)
                      .++++++.++    .+.+.++++|+++++++||+.+.  ++. .+|+||.
T Consensus       314 ~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~a~~~~~--~~~-~~k~vi~  360 (361)
T cd08231         314 YRAVRFLERTQDRFPFAELVTHRYPLEDINEALELAE--SGT-ALKVVID  360 (361)
T ss_pred             HHHHHHHHhccCcCCchhheeeeeeHHHHHHHHHHHH--cCC-ceEEEeC
Confidence            5666666665    34445788999999999999988  665 4799985

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.87  E-value=2e-20  Score=144.89  Aligned_cols=171  Identities=20%  Similarity=0.301  Sum_probs=137.4

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChh--HHHh-HHHhhCCCCCe
Q psy2961           6 NSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRDASIPKPK   82 (202)
Q Consensus         6 ~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~--~~~~-~~~~~~~~~~d   82 (202)
                      .++.+|++|+|+| +|++|++++++|+.+|+++++++++++    +++.++++|+++++++.  ++.. +.+.   .++|
T Consensus       159 ~~~~~~~~vlV~g-~g~iG~~~~~~a~~~G~~vi~~~~~~~----~~~~~~~~g~~~~i~~~~~~~~~~~~~~---~~~d  230 (333)
T cd08296         159 SGAKPGDLVAVQG-IGGLGHLAVQYAAKMGFRTVAISRGSD----KADLARKLGAHHYIDTSKEDVAEALQEL---GGAK  230 (333)
T ss_pred             cCCCCCCEEEEEC-CcHHHHHHHHHHHHCCCeEEEEeCChH----HHHHHHHcCCcEEecCCCccHHHHHHhc---CCCC
Confidence            4788999999999 569999999999999999998887765    68888999999888753  4444 5544   4799


Q ss_pred             EEEecCCC-chHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHHH
Q psy2961          83 LALNCVGG-NSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMR  161 (202)
Q Consensus        83 ~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (202)
                      +++|++|. ......+++++++|+++.+|... ...+++...++.+++++.++....           .+.+..+++++.
T Consensus       231 ~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~~-----------~~~~~~~~~~~~  298 (333)
T cd08296         231 LILATAPNAKAISALVGGLAPRGKLLILGAAG-EPVAVSPLQLIMGRKSIHGWPSGT-----------ALDSEDTLKFSA  298 (333)
T ss_pred             EEEECCCchHHHHHHHHHcccCCEEEEEecCC-CCCCcCHHHHhhcccEEEEeCcCC-----------HHHHHHHHHHHH
Confidence            99999864 45556899999999999999654 334555556678999999987332           244777888888


Q ss_pred             cCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEe
Q psy2961         162 TGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYID  199 (202)
Q Consensus       162 ~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~  199 (202)
                      ++++++.+ .+|+++++++||+.+.  .++..||+|++
T Consensus       299 ~~~l~~~v-~~~~~~~~~~a~~~~~--~~~~~gk~v~~  333 (333)
T cd08296         299 LHGVRPMV-ETFPLEKANEAYDRMM--SGKARFRVVLT  333 (333)
T ss_pred             hCCCCceE-EEEEHHHHHHHHHHHH--CCCCceeEEeC
Confidence            99888764 6899999999999999  88889999874

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=99.87  E-value=7.4e-21  Score=143.98  Aligned_cols=157  Identities=18%  Similarity=0.180  Sum_probs=122.5

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCc-EEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhCCCCCeE
Q psy2961           6 NSLSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKL   83 (202)
Q Consensus         6 ~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~~~~~d~   83 (202)
                      ....+|++|+|+|+| ++|++++|+|+.+|++ ++++..+++    +++.++++|++.++++.+..+ +.+.+.+.++|+
T Consensus       116 ~~~~~g~~VlV~G~G-~vG~~~~~~ak~~G~~~Vi~~~~~~~----r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~  190 (280)
T TIGR03366       116 AGDLKGRRVLVVGAG-MLGLTAAAAAAAAGAARVVAADPSPD----RRELALSFGATALAEPEVLAERQGGLQNGRGVDV  190 (280)
T ss_pred             ccCCCCCEEEEECCC-HHHHHHHHHHHHcCCCEEEEECCCHH----HHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCE
Confidence            445699999999985 9999999999999997 655544443    788999999999988765555 767776678999


Q ss_pred             EEecCCCchH-HHHHHhcccCcEEEEEeccCC-CCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHHH
Q psy2961          84 ALNCVGGNSA-TNLLRTLVSKGVMVTYGGMSR-EPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMR  161 (202)
Q Consensus        84 vid~~g~~~~-~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (202)
                      +||++|.+.. ..++++++++|+++.+|.... .+.+++...++.+++++.|+....           .+.++++++++.
T Consensus       191 vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~i~~~~~~~~~~~i~g~~~~~-----------~~~~~~~~~~l~  259 (280)
T TIGR03366       191 ALEFSGATAAVRACLESLDVGGTAVLAGSVFPGGPVALDPEQVVRRWLTIRGVHNYE-----------PRHLDQAVRFLA  259 (280)
T ss_pred             EEECCCChHHHHHHHHHhcCCCEEEEeccCCCCCceeeCHHHHHhCCcEEEecCCCC-----------HHHHHHHHHHHH
Confidence            9999997764 468999999999999996542 344566777888999999976432           345888999998


Q ss_pred             cC--CCCC--CcceeechhhH
Q psy2961         162 TG--KLAA--PAHKFVTLKNF  178 (202)
Q Consensus       162 ~g--~~~~--~~~~~~~~~~~  178 (202)
                      ++  ++.+  .++++||++++
T Consensus       260 ~~~~~~~~~~~it~~~~l~~~  280 (280)
T TIGR03366       260 ANGQRFPFEELVGKPFPLADV  280 (280)
T ss_pred             hhCCCCCHHHHhhcccccccC
Confidence            75  4443  37889999863

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=99.86  E-value=3.1e-20  Score=143.48  Aligned_cols=183  Identities=23%  Similarity=0.331  Sum_probs=144.1

Q ss_pred             ccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHh-cCCceEeChh--HHHh-HHHhhCC
Q psy2961           3 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS-LGADYVFTEE--ELRN-ISRDASI   78 (202)
Q Consensus         3 ~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~-lg~~~v~~~~--~~~~-~~~~~~~   78 (202)
                      .+.+++.+|++|+|+|+++++|++++|+|+..|+++++++++++    +.+.+++ +|++.++++.  ++.. +.+.+. 
T Consensus       138 ~~~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~-  212 (329)
T cd05288         138 TEIGKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDE----KCRWLVEELGFDAAINYKTPDLAEALKEAAP-  212 (329)
T ss_pred             HhccCCCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHhhcCCceEEecCChhHHHHHHHhcc-
Confidence            34567889999999998889999999999999999998887765    5777777 9998888753  4555 666654 


Q ss_pred             CCCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcC-----CCcccccccCeeEEEEechhHhhhcccHHHHHHHH
Q psy2961          79 PKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQ-----IPTSAFIFKDITLRGHWMTRWQKENKESAERKSMM  153 (202)
Q Consensus        79 ~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  153 (202)
                      .++|+++||+|+......+++++++|+++.+|........     ++....+.++.++.++....+.      ....+.+
T Consensus       213 ~~~d~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~  286 (329)
T cd05288         213 DGIDVYFDNVGGEILDAALTLLNKGGRIALCGAISQYNATEPPGPKNLGNIITKRLTMQGFIVSDYA------DRFPEAL  286 (329)
T ss_pred             CCceEEEEcchHHHHHHHHHhcCCCceEEEEeeccCcccccccccccHHHHhhCcceEEeecchhhH------HHHHHHH
Confidence            6899999999987777799999999999999865433221     2234456778888887654322      2335678


Q ss_pred             HHHHHHHHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEE
Q psy2961         154 NELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYI  198 (202)
Q Consensus       154 ~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~  198 (202)
                      .++.+++.+|.+.+.....+++++++++|+.+.  .++..+|+++
T Consensus       287 ~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~--~~~~~gkvvv  329 (329)
T cd05288         287 AELAKWLAEGKLKYREDVVEGLENAPEAFLGLF--TGKNTGKLVV  329 (329)
T ss_pred             HHHHHHHHCCCccccccccccHHHHHHHHHHHh--cCCCccceeC
Confidence            999999999999887667799999999999998  7777788874

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=99.86  E-value=5.3e-20  Score=141.44  Aligned_cols=179  Identities=21%  Similarity=0.266  Sum_probs=138.7

Q ss_pred             ccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeC-hhHHHh-HHHhhCCCC
Q psy2961           3 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT-EEELRN-ISRDASIPK   80 (202)
Q Consensus         3 ~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~-~~~~~~-~~~~~~~~~   80 (202)
                      .+..++++|++|+|+|+++++|++++|+|+..|+++++++++++    +.+.++++|++.+++ ..++.. +.+.  +.+
T Consensus       135 ~~~~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~i~~~--~~~  208 (320)
T cd08243         135 FRSLGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPE----RAALLKELGADEVVIDDGAIAEQLRAA--PGG  208 (320)
T ss_pred             HHhcCCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHhcCCcEEEecCccHHHHHHHh--CCC
Confidence            34567889999999999889999999999999999999888775    578888899988774 334445 6555  578


Q ss_pred             CeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcC--CCcccc--cccCeeEEEEechhHhhhcccHHHHHHHHHHH
Q psy2961          81 PKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQ--IPTSAF--IFKDITLRGHWMTRWQKENKESAERKSMMNEL  156 (202)
Q Consensus        81 ~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~--~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  156 (202)
                      +|+++||+|+......+++++++|+++.+|...+....  ......  +.+++++.++....         ...+.++.+
T Consensus       209 ~d~vl~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~  279 (320)
T cd08243         209 FDKVLELVGTATLKDSLRHLRPGGIVCMTGLLGGQWTLEDFNPMDDIPSGVNLTLTGSSSGD---------VPQTPLQEL  279 (320)
T ss_pred             ceEEEECCChHHHHHHHHHhccCCEEEEEccCCCCcccCCcchhhhhhhccceEEEecchhh---------hhHHHHHHH
Confidence            99999999987777799999999999999864332111  111111  25667777665432         123568889


Q ss_pred             HHHHHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEE
Q psy2961         157 TEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYI  198 (202)
Q Consensus       157 ~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~  198 (202)
                      .+++.++.+.+.+.+.++++++++|++.+.  .+...+|+|+
T Consensus       280 ~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~--~~~~~~kvvv  319 (320)
T cd08243         280 FDFVAAGHLDIPPSKVFTFDEIVEAHAYME--SNRAFGKVVV  319 (320)
T ss_pred             HHHHHCCceecccccEEcHHHHHHHHHHHH--hCCCCCcEEe
Confidence            999999999887778999999999999998  7777888876

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=99.86  E-value=2.5e-20  Score=144.82  Aligned_cols=168  Identities=15%  Similarity=0.227  Sum_probs=122.3

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHH-CC-CcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeE
Q psy2961           6 NSLSPGDVVIQNGANSACGQNVIQIARH-WG-LKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKL   83 (202)
Q Consensus         6 ~~~~~g~~VlI~g~~~~vG~~~i~la~~-~g-~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~   83 (202)
                      +.+++|++|+|+|+| ++|++++|+|+. .| .+|+++..+++    +++.+++.+....++  ++.      ...++|+
T Consensus       159 ~~~~~g~~VlV~G~G-~vGl~~~~~a~~~~g~~~vi~~~~~~~----k~~~a~~~~~~~~~~--~~~------~~~g~d~  225 (341)
T cd08237         159 IAHKDRNVIGVWGDG-NLGYITALLLKQIYPESKLVVFGKHQE----KLDLFSFADETYLID--DIP------EDLAVDH  225 (341)
T ss_pred             cCCCCCCEEEEECCC-HHHHHHHHHHHHhcCCCcEEEEeCcHh----HHHHHhhcCceeehh--hhh------hccCCcE
Confidence            346889999999975 999999999996 55 46777766654    678887766654332  111      1136999


Q ss_pred             EEecCCCc----hHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHH
Q psy2961          84 ALNCVGGN----SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEM  159 (202)
Q Consensus        84 vid~~g~~----~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (202)
                      +||++|++    .+..++++++++|+++.+|... .+..++...++.+++++.|+....           .+.+++++++
T Consensus       226 viD~~G~~~~~~~~~~~~~~l~~~G~iv~~G~~~-~~~~~~~~~~~~k~~~i~g~~~~~-----------~~~~~~~~~~  293 (341)
T cd08237         226 AFECVGGRGSQSAINQIIDYIRPQGTIGLMGVSE-YPVPINTRMVLEKGLTLVGSSRST-----------REDFERAVEL  293 (341)
T ss_pred             EEECCCCCccHHHHHHHHHhCcCCcEEEEEeecC-CCcccCHHHHhhCceEEEEecccC-----------HHHHHHHHHH
Confidence            99999963    3455899999999999999543 334556666788999999976421           2457889999


Q ss_pred             HHcC-----CCCCCcceeechh---hHHHHHHHHhhhcCCCCceEEEeec
Q psy2961         160 MRTG-----KLAAPAHKFVTLK---NFQEALMNTMSIQGKSGVKYYIDFR  201 (202)
Q Consensus       160 ~~~g-----~~~~~~~~~~~~~---~~~~a~~~~~~~~~~~~gkvv~~~~  201 (202)
                      +.+|     .+++.++++|+++   ++.++|+...  ++ ..||+|++++
T Consensus       294 ~~~~~~~~~~l~~~i~~~~~l~~l~~~~~a~~~~~--~~-~~gKvvi~~~  340 (341)
T cd08237         294 LSRNPEVAEYLRKLVGGVFPVRSINDIHRAFESDL--TN-SWGKTVMEWE  340 (341)
T ss_pred             HHhCCcccCChHHHhccccccccHHHHHHHHHHHh--hc-CcceEEEEee
Confidence            9998     4556688999985   5566666554  33 6889999875

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.86  E-value=7.4e-20  Score=142.15  Aligned_cols=177  Identities=21%  Similarity=0.286  Sum_probs=141.3

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChh--HHHh-HHHhhCCCCCe
Q psy2961           6 NSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRDASIPKPK   82 (202)
Q Consensus         6 ~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~--~~~~-~~~~~~~~~~d   82 (202)
                      .+++++++|||+|+++++|++++++|+..|+++++++++++    +.+.++++|++.++++.  ++.. +.+.+++.++|
T Consensus       161 ~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~----~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~vd  236 (341)
T cd08297         161 AGLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDE----KLELAKELGADAFVDFKKSDDVEAVKELTGGGGAH  236 (341)
T ss_pred             cCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHH----HHHHHHHcCCcEEEcCCCccHHHHHHHHhcCCCCC
Confidence            36889999999999988999999999999999999988875    57788889999888754  4555 77777677899


Q ss_pred             EEEecCCC-chHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHHH
Q psy2961          83 LALNCVGG-NSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMR  161 (202)
Q Consensus        83 ~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (202)
                      +++|+.++ ......+++++++|+++.+|........++...+..++.++.+.....           .+.++++++++.
T Consensus       237 ~vl~~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~  305 (341)
T cd08297         237 AVVVTAVSAAAYEQALDYLRPGGTLVCVGLPPGGFIPLDPFDLVLRGITIVGSLVGT-----------RQDLQEALEFAA  305 (341)
T ss_pred             EEEEcCCchHHHHHHHHHhhcCCEEEEecCCCCCCCCCCHHHHHhcccEEEEeccCC-----------HHHHHHHHHHHH
Confidence            99996664 445568999999999999985543322444444457788887754321           356888999999


Q ss_pred             cCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         162 TGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       162 ~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      ++.+.+.+ ..|++++++++|+.+.  .+...+|++++|
T Consensus       306 ~~~l~~~~-~~~~~~~~~~a~~~~~--~~~~~gkvvi~~  341 (341)
T cd08297         306 RGKVKPHI-QVVPLEDLNEVFEKME--EGKIAGRVVVDF  341 (341)
T ss_pred             cCCCccee-EEEcHHHHHHHHHHHH--cCCccceEEEeC
Confidence            99998744 6799999999999999  888889999875

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=99.86  E-value=6e-20  Score=142.60  Aligned_cols=174  Identities=20%  Similarity=0.276  Sum_probs=137.9

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHCC-CcEEEEecCcccHHHHHHHHHhcCCceEeChhH-HHh-HHHhhCCCCCe
Q psy2961           6 NSLSPGDVVIQNGANSACGQNVIQIARHWG-LKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE-LRN-ISRDASIPKPK   82 (202)
Q Consensus         6 ~~~~~g~~VlI~g~~~~vG~~~i~la~~~g-~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~-~~~-~~~~~~~~~~d   82 (202)
                      ..+.+|++|||+|++ ++|++++|+|+..| .++++++++++    +.+.++++|+++++++.+ +.. +.+.+.+.++|
T Consensus       163 ~~~~~~~~vlI~g~~-~vg~~~~~~a~~~g~~~v~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~d  237 (340)
T cd05284         163 PYLDPGSTVVVIGVG-GLGHIAVQILRALTPATVIAVDRSEE----ALKLAERLGADHVLNASDDVVEEVRELTGGRGAD  237 (340)
T ss_pred             ccCCCCCEEEEEcCc-HHHHHHHHHHHHhCCCcEEEEeCCHH----HHHHHHHhCCcEEEcCCccHHHHHHHHhCCCCCC
Confidence            357889999999966 69999999999999 79988887765    578888999998887533 445 77777667899


Q ss_pred             EEEecCCC-chHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHHH
Q psy2961          83 LALNCVGG-NSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMR  161 (202)
Q Consensus        83 ~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (202)
                      +++|++|+ ......+++++++|+++.+|....  ..++....+.+++++.+.....           .+.+.+++++++
T Consensus       238 vvld~~g~~~~~~~~~~~l~~~g~~i~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~  304 (340)
T cd05284         238 AVIDFVGSDETLALAAKLLAKGGRYVIVGYGGH--GRLPTSDLVPTEISVIGSLWGT-----------RAELVEVVALAE  304 (340)
T ss_pred             EEEEcCCCHHHHHHHHHHhhcCCEEEEEcCCCC--CccCHHHhhhcceEEEEEeccc-----------HHHHHHHHHHHH
Confidence            99999997 455568999999999999985432  2333334457888888875321           345788889999


Q ss_pred             cCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         162 TGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       162 ~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      +|.+.+ +.+.|+++++++||+.+.  +++..+|+++.+
T Consensus       305 ~g~l~~-~~~~~~~~~~~~a~~~~~--~~~~~gkvv~~~  340 (340)
T cd05284         305 SGKVKV-EITKFPLEDANEALDRLR--EGRVTGRAVLVP  340 (340)
T ss_pred             hCCCCc-ceEEEeHHHHHHHHHHHH--cCCccceEEecC
Confidence            999886 456899999999999999  888889999753

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=99.86  E-value=5.9e-20  Score=143.29  Aligned_cols=180  Identities=19%  Similarity=0.240  Sum_probs=132.1

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCc-EEEEecCcccHHHHHHHHHhcCCceEeChh--HHHh-HHHhhCCC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRDASIP   79 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~--~~~~-~~~~~~~~   79 (202)
                      +.+++++|++|||+|+ |++|++++|+|+..|++ ++++.++++    +.+.++++|++.++++.  ++.. +...+.+.
T Consensus       160 ~~~~~~~g~~vlI~g~-g~iG~~~~~lak~~G~~~v~~~~~~~~----~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~  234 (351)
T cd08285         160 ELANIKLGDTVAVFGI-GPVGLMAVAGARLRGAGRIIAVGSRPN----RVELAKEYGATDIVDYKNGDVVEQILKLTGGK  234 (351)
T ss_pred             HccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHH----HHHHHHHcCCceEecCCCCCHHHHHHHHhCCC
Confidence            4567889999999975 59999999999999996 555555543    67888999999988753  4555 66666667


Q ss_pred             CCeEEEecCCCch-HHHHHHhcccCcEEEEEeccCCC-CcCCCccc--ccccCeeEEEEechhHhhhcccHHHHHHHHHH
Q psy2961          80 KPKLALNCVGGNS-ATNLLRTLVSKGVMVTYGGMSRE-PVQIPTSA--FIFKDITLRGHWMTRWQKENKESAERKSMMNE  155 (202)
Q Consensus        80 ~~d~vid~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  155 (202)
                      ++|+++||+|++. ....+++++++|+++.+|..... ...++...  ...+..++.+.....          ..+.+++
T Consensus       235 ~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----------~~~~~~~  304 (351)
T cd08285         235 GVDAVIIAGGGQDTFEQALKVLKPGGTISNVNYYGEDDYLPIPREEWGVGMGHKTINGGLCPG----------GRLRMER  304 (351)
T ss_pred             CCcEEEECCCCHHHHHHHHHHhhcCCEEEEecccCCCceeecChhhhhhhccccEEEEeecCC----------ccccHHH
Confidence            8999999999764 45689999999999999865432 11222111  113344554432110          1345888


Q ss_pred             HHHHHHcCCCCC---CcceeechhhHHHHHHHHhhhcCC-CCceEEEee
Q psy2961         156 LTEMMRTGKLAA---PAHKFVTLKNFQEALMNTMSIQGK-SGVKYYIDF  200 (202)
Q Consensus       156 ~~~~~~~g~~~~---~~~~~~~~~~~~~a~~~~~~~~~~-~~gkvv~~~  200 (202)
                      +++++.+|++++   .+.++++++++++||+.+.  +++ ...|+++++
T Consensus       305 ~~~~~~~g~i~~~~~~~~~~~~l~~~~~a~~~~~--~~~~~~~k~~~~~  351 (351)
T cd08285         305 LASLIEYGRVDPSKLLTHHFFGFDDIEEALMLMK--DKPDDLIKPVIIF  351 (351)
T ss_pred             HHHHHHcCCCChhhceeccccCHHHHHHHHHHHh--cccCCeEEEEEeC
Confidence            999999999998   2345799999999999998  665 578999875

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=99.85  E-value=8.8e-20  Score=141.39  Aligned_cols=186  Identities=18%  Similarity=0.282  Sum_probs=136.2

Q ss_pred             ccccCCCC-----CCEEEEeCCCcHHHHHHHHHHHHC-CCcEEEEecCcccHHHHHHHHHhcCCceEeCh-hHHHh-HHH
Q psy2961           3 KDYNSLSP-----GDVVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVFTE-EELRN-ISR   74 (202)
Q Consensus         3 ~~~~~~~~-----g~~VlI~g~~~~vG~~~i~la~~~-g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~-~~~~~-~~~   74 (202)
                      ...+++++     |++|||+|+++++|++++|+|+.. |+++++++++++    +.+.++++|+++++++ .++.. +++
T Consensus       136 ~~~~~~~~~~~~~g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~~~----~~~~l~~~g~~~~~~~~~~~~~~i~~  211 (336)
T TIGR02817       136 FDRLGINDPVAGDKRALLIIGGAGGVGSILIQLARQLTGLTVIATASRPE----SQEWVLELGAHHVIDHSKPLKAQLEK  211 (336)
T ss_pred             HHhcCCCCCCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCcHH----HHHHHHHcCCCEEEECCCCHHHHHHH
Confidence            34566666     999999999889999999999998 999999988775    5788899999998873 34555 666


Q ss_pred             hhCCCCCeEEEecCCC-chHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEech-hHhhhcccHHHHHHH
Q psy2961          75 DASIPKPKLALNCVGG-NSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMT-RWQKENKESAERKSM  152 (202)
Q Consensus        75 ~~~~~~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~  152 (202)
                       ..+.++|+++|++++ ......+++++++|+++.++..    ..++...+..+++++.+.... ......+........
T Consensus       212 -~~~~~vd~vl~~~~~~~~~~~~~~~l~~~G~~v~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (336)
T TIGR02817       212 -LGLEAVSYVFSLTHTDQHFKEIVELLAPQGRFALIDDP----AELDISPFKRKSISLHWEFMFTRSMFQTADMIEQHHL  286 (336)
T ss_pred             -hcCCCCCEEEEcCCcHHHHHHHHHHhccCCEEEEEccc----ccccchhhhhcceEEEEEEeecccccchhhhhhhHHH
Confidence             344679999999865 4556689999999999987522    133433444455666654332 111111111112367


Q ss_pred             HHHHHHHHHcCCCCCCcceee---chhhHHHHHHHHhhhcCCCCceEEEe
Q psy2961         153 MNELTEMMRTGKLAAPAHKFV---TLKNFQEALMNTMSIQGKSGVKYYID  199 (202)
Q Consensus       153 ~~~~~~~~~~g~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~~gkvv~~  199 (202)
                      ++++++++.++.+++.+.+.+   +++++++||+.+.  .++..+|++++
T Consensus       287 ~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~--~~~~~gkvvv~  334 (336)
T TIGR02817       287 LNRVARLVDAGKIRTTLAETFGTINAANLKRAHALIE--SGKARGKIVLE  334 (336)
T ss_pred             HHHHHHHHHCCCeeccchhccCCCCHHHHHHHHHHHH--cCCccceEEEe
Confidence            899999999999987666555   4799999999999  88888999875

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=99.85  E-value=1.7e-19  Score=139.36  Aligned_cols=183  Identities=22%  Similarity=0.387  Sum_probs=142.5

Q ss_pred             ccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeCh--hHHHh-HHHhhCCC
Q psy2961           3 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE--EELRN-ISRDASIP   79 (202)
Q Consensus         3 ~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~--~~~~~-~~~~~~~~   79 (202)
                      .+..++++|++|+|+|++|++|++++|+|+..|+++++++++++    +.+.++++|++.+++.  .++.. +....+ .
T Consensus       132 ~~~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~~----~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~-~  206 (329)
T cd08250         132 EEVGEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSDE----KAEFLKSLGCDRPINYKTEDLGEVLKKEYP-K  206 (329)
T ss_pred             HHhcCCCCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCcHH----HHHHHHHcCCceEEeCCCccHHHHHHHhcC-C
Confidence            34567899999999999889999999999999999999887765    5778888998888753  33444 555443 6


Q ss_pred             CCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCC----------cCCCcccccccCeeEEEEechhHhhhcccHHHH
Q psy2961          80 KPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREP----------VQIPTSAFIFKDITLRGHWMTRWQKENKESAER  149 (202)
Q Consensus        80 ~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  149 (202)
                      ++|+++|++|+......+++++++|+++.+|......          ..++ ...+.+++++.++....+..      ..
T Consensus       207 ~vd~v~~~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~  279 (329)
T cd08250         207 GVDVVYESVGGEMFDTCVDNLALKGRLIVIGFISGYQSGTGPSPVKGATLP-PKLLAKSASVRGFFLPHYAK------LI  279 (329)
T ss_pred             CCeEEEECCcHHHHHHHHHHhccCCeEEEEecccCCcccCccccccccccc-HHHhhcCceEEEEEhHHHHH------HH
Confidence            7999999999877777999999999999998654321          0111 23457788888887654322      24


Q ss_pred             HHHHHHHHHHHHcCCCCCC--cceeechhhHHHHHHHHhhhcCCCCceEEEe
Q psy2961         150 KSMMNELTEMMRTGKLAAP--AHKFVTLKNFQEALMNTMSIQGKSGVKYYID  199 (202)
Q Consensus       150 ~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~  199 (202)
                      .+.+.++.+++.++.+.+.  +.+.++++++++||+.+.  .+...+|++++
T Consensus       280 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~kvvv~  329 (329)
T cd08250         280 PQHLDRLLQLYQRGKLVCEVDPTRFRGLESVADAVDYLY--SGKNIGKVVVE  329 (329)
T ss_pred             HHHHHHHHHHHHCCCeeeeECCccccCHHHHHHHHHHHH--cCCCCceEEeC
Confidence            5678889999999998874  446699999999999998  77778899874

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=99.85  E-value=7.9e-20  Score=141.58  Aligned_cols=173  Identities=22%  Similarity=0.355  Sum_probs=136.9

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhCCCCCeEEE
Q psy2961           7 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLAL   85 (202)
Q Consensus         7 ~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~~~~~d~vi   85 (202)
                      ++.++++|+|+|+++++|++++|+|+..|+++++++++++    +.+.++++ ++.++++.++.. +++.   .++|+++
T Consensus       159 ~~~~~~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~v~~~---~~~d~~l  230 (334)
T PRK13771        159 GVKKGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSES----KAKIVSKY-ADYVIVGSKFSEEVKKI---GGADIVI  230 (334)
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHH-HHHhcCchhHHHHHHhc---CCCcEEE
Confidence            7789999999999889999999999999999998888765    56777777 776776555545 5553   2699999


Q ss_pred             ecCCCchHHHHHHhcccCcEEEEEeccCCCCc-CCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHHHcCC
Q psy2961          86 NCVGGNSATNLLRTLVSKGVMVTYGGMSREPV-QIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGK  164 (202)
Q Consensus        86 d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  164 (202)
                      ||+|+......+++++++|+++.+|....... .......+.+++++.+....           ..+.++.++++++++.
T Consensus       231 d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~  299 (334)
T PRK13771        231 ETVGTPTLEESLRSLNMGGKIIQIGNVDPSPTYSLRLGYIILKDIEIIGHISA-----------TKRDVEEALKLVAEGK  299 (334)
T ss_pred             EcCChHHHHHHHHHHhcCCEEEEEeccCCCCCcccCHHHHHhcccEEEEecCC-----------CHHHHHHHHHHHHcCC
Confidence            99999877779999999999999996543221 22333335677788776321           1455888999999999


Q ss_pred             CCCCcceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         165 LAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       165 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      +.+.+.++++++++++||+.+.  .+...+|+++..
T Consensus       300 l~~~~~~~~~~~~~~~a~~~~~--~~~~~~kvv~~~  333 (334)
T PRK13771        300 IKPVIGAEVSLSEIDKALEELK--DKSRIGKILVKP  333 (334)
T ss_pred             CcceEeeeEcHHHHHHHHHHHH--cCCCcceEEEec
Confidence            9877788999999999999998  777788999864

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=99.85  E-value=1.2e-19  Score=140.71  Aligned_cols=178  Identities=20%  Similarity=0.314  Sum_probs=139.5

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChh--HHHh-HHHhhCCCC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRDASIPK   80 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~--~~~~-~~~~~~~~~   80 (202)
                      +..++.+|++|||+|+ +++|.+++|+|+.+|+++++++++++    +.+.++++|+++++++.  ++.. +.+.+.+.+
T Consensus       153 ~~~~l~~g~~vLI~g~-g~vG~~a~~lA~~~g~~v~~~~~s~~----~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~  227 (337)
T cd08261         153 RRAGVTAGDTVLVVGA-GPIGLGVIQVAKARGARVIVVDIDDE----RLEFARELGADDTINVGDEDVAARLRELTDGEG  227 (337)
T ss_pred             HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEECCCHH----HHHHHHHhCCCEEecCcccCHHHHHHHHhCCCC
Confidence            4567889999999975 59999999999999999998877765    57888889999988753  4555 777776678


Q ss_pred             CeEEEecCCCc-hHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHH
Q psy2961          81 PKLALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEM  159 (202)
Q Consensus        81 ~d~vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (202)
                      +|+++||+|+. .....+++|+++|+++.++... ....++...+..+++++.+...           ...+.++++.++
T Consensus       228 vd~vld~~g~~~~~~~~~~~l~~~G~~i~~g~~~-~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l  295 (337)
T cd08261         228 ADVVIDATGNPASMEEAVELVAHGGRVVLVGLSK-GPVTFPDPEFHKKELTILGSRN-----------ATREDFPDVIDL  295 (337)
T ss_pred             CCEEEECCCCHHHHHHHHHHHhcCCEEEEEcCCC-CCCccCHHHHHhCCCEEEEecc-----------CChhhHHHHHHH
Confidence            99999999875 4456899999999999988554 2223333344556677666431           124568889999


Q ss_pred             HHcCCCCC--CcceeechhhHHHHHHHHhhhcC-CCCceEEEee
Q psy2961         160 MRTGKLAA--PAHKFVTLKNFQEALMNTMSIQG-KSGVKYYIDF  200 (202)
Q Consensus       160 ~~~g~~~~--~~~~~~~~~~~~~a~~~~~~~~~-~~~gkvv~~~  200 (202)
                      +.+|.+.+  .+..+++++++++|++.+.  ++ ...+|+|++|
T Consensus       296 ~~~~~i~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~~k~v~~~  337 (337)
T cd08261         296 LESGKVDPEALITHRFPFEDVPEAFDLWE--APPGGVIKVLIEF  337 (337)
T ss_pred             HHcCCCChhhheEEEeeHHHHHHHHHHHh--cCCCceEEEEEeC
Confidence            99999998  6778999999999999998  77 4778999875

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>cd08251 polyketide_synthase polyketide synthase

Probab=99.85  E-value=4.2e-19  Score=135.36  Aligned_cols=185  Identities=17%  Similarity=0.210  Sum_probs=143.4

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeCh--hHHHh-HHHhhCCCCC
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE--EELRN-ISRDASIPKP   81 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~--~~~~~-~~~~~~~~~~   81 (202)
                      ..++++|++|+|+++++++|++++|+++..|+++++++++++    +.+.++++|.+.++++  .++.. +.+.+.+.++
T Consensus       115 ~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~~v~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~  190 (303)
T cd08251         115 RAGLAKGEHILIQTATGGTGLMAVQLARLKGAEIYATASSDD----KLEYLKQLGVPHVINYVEEDFEEEIMRLTGGRGV  190 (303)
T ss_pred             hcCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEcCCHH----HHHHHHHcCCCEEEeCCCccHHHHHHHHcCCCCc
Confidence            567899999999999999999999999999999999887765    5788888999888864  34555 7777777789


Q ss_pred             eEEEecCCCchHHHHHHhcccCcEEEEEeccCCCC-cCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHH
Q psy2961          82 KLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREP-VQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMM  160 (202)
Q Consensus        82 d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (202)
                      |+++|++++......+++++++|+++.++...... ..++.. .+.++..+....+..+....  +....+.+.++.+++
T Consensus       191 d~v~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  267 (303)
T cd08251         191 DVVINTLSGEAIQKGLNCLAPGGRYVEIAMTALKSAPSVDLS-VLSNNQSFHSVDLRKLLLLD--PEFIADYQAEMVSLV  267 (303)
T ss_pred             eEEEECCcHHHHHHHHHHhccCcEEEEEeccCCCccCccChh-HhhcCceEEEEehHHhhhhC--HHHHHHHHHHHHHHH
Confidence            99999998877777899999999999998543221 122222 23445555555544332222  244567889999999


Q ss_pred             HcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEE
Q psy2961         161 RTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYI  198 (202)
Q Consensus       161 ~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~  198 (202)
                      .+|.+.+...+.|++++++++++.+.  .+...+|+++
T Consensus       268 ~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~iv~  303 (303)
T cd08251         268 EEGELRPTVSRIFPFDDIGEAYRYLS--DRENIGKVVV  303 (303)
T ss_pred             HCCCccCCCceEEcHHHHHHHHHHHH--hCCCcceEeC
Confidence            99999887788999999999999998  7777888874

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a

>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases

Probab=99.85  E-value=3.8e-19  Score=137.16  Aligned_cols=181  Identities=19%  Similarity=0.262  Sum_probs=140.1

Q ss_pred             CCC-CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhCCCCCeEE
Q psy2961           7 SLS-PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLA   84 (202)
Q Consensus         7 ~~~-~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~~~~~d~v   84 (202)
                      +.. +|++|+|+|++|++|++++|+|+.+|+++++++++++    +.+.++++|+++++++.+... +..... .++|.+
T Consensus       142 ~~~~~~~~vlI~ga~g~vg~~~~~~A~~~G~~vi~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~  216 (324)
T cd08288         142 GVTPGDGPVLVTGAAGGVGSVAVALLARLGYEVVASTGRPE----EADYLRSLGASEIIDRAELSEPGRPLQK-ERWAGA  216 (324)
T ss_pred             CcCCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHH----HHHHHHhcCCCEEEEcchhhHhhhhhcc-CcccEE
Confidence            344 6789999999889999999999999999999987775    678889999999988766544 554443 358999


Q ss_pred             EecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHHHcCC
Q psy2961          85 LNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGK  164 (202)
Q Consensus        85 id~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  164 (202)
                      +|+++++.....+..++.+|+++.+|.....+...+...++.+++++.+........     ....+.+..+.+++.++.
T Consensus       217 ~d~~~~~~~~~~~~~~~~~g~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~  291 (324)
T cd08288         217 VDTVGGHTLANVLAQTRYGGAVAACGLAGGADLPTTVMPFILRGVTLLGIDSVMAPI-----ERRRAAWARLARDLDPAL  291 (324)
T ss_pred             EECCcHHHHHHHHHHhcCCCEEEEEEecCCCCCCcchhhhhccccEEEEEEeecccc-----hhhHHHHHHHHHHHhcCC
Confidence            999998665667888899999999996532222333444557889998876432111     223567888888999998


Q ss_pred             CCCCcceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         165 LAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       165 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      +.+ +.+.++++++++||+.+.  .++..+|+++++
T Consensus       292 ~~~-i~~~~~~~~~~~a~~~~~--~~~~~~~vvv~~  324 (324)
T cd08288         292 LEA-LTREIPLADVPDAAEAIL--AGQVRGRVVVDV  324 (324)
T ss_pred             ccc-cceeecHHHHHHHHHHHh--cCCccCeEEEeC
Confidence            876 478999999999999999  888889999864

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal

>PRK10083 putative oxidoreductase; Provisional

Probab=99.84  E-value=2.1e-19  Score=139.55  Aligned_cols=178  Identities=15%  Similarity=0.250  Sum_probs=132.4

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHH-CCCcEEEEecCcccHHHHHHHHHhcCCceEeChhH--HHh-HHHhhCCC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARH-WGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE--LRN-ISRDASIP   79 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~-~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~--~~~-~~~~~~~~   79 (202)
                      +.+++++|++|+|+|+ |++|++++|+|+. +|++++.++++.++   +.+.++++|++.++++.+  +.. +..  .+.
T Consensus       154 ~~~~~~~g~~vlI~g~-g~vG~~~~~~a~~~~G~~~v~~~~~~~~---~~~~~~~~Ga~~~i~~~~~~~~~~~~~--~g~  227 (339)
T PRK10083        154 GRTGPTEQDVALIYGA-GPVGLTIVQVLKGVYNVKAVIVADRIDE---RLALAKESGADWVINNAQEPLGEALEE--KGI  227 (339)
T ss_pred             HhcCCCCCCEEEEECC-CHHHHHHHHHHHHhCCCCEEEEEcCCHH---HHHHHHHhCCcEEecCccccHHHHHhc--CCC
Confidence            4567899999999995 5999999999996 69986665554432   688889999999987543  333 422  123


Q ss_pred             CCeEEEecCCCc-hHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHH
Q psy2961          80 KPKLALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTE  158 (202)
Q Consensus        80 ~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  158 (202)
                      ++|++||++|++ .....+++++++|+++.+|.... ...+....+..+++++.+....            .+.++++++
T Consensus       228 ~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~  294 (339)
T PRK10083        228 KPTLIIDAACHPSILEEAVTLASPAARIVLMGFSSE-PSEIVQQGITGKELSIFSSRLN------------ANKFPVVID  294 (339)
T ss_pred             CCCEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCC-CceecHHHHhhcceEEEEEecC------------hhhHHHHHH
Confidence            567999999965 45668999999999999985542 2223333334566666664421            345888999


Q ss_pred             HHHcCCCCCC--cceeechhhHHHHHHHHhhhcC-CCCceEEEeecC
Q psy2961         159 MMRTGKLAAP--AHKFVTLKNFQEALMNTMSIQG-KSGVKYYIDFRQ  202 (202)
Q Consensus       159 ~~~~g~~~~~--~~~~~~~~~~~~a~~~~~~~~~-~~~gkvv~~~~~  202 (202)
                      ++++|++++.  ++++|+++++++||+.+.  ++ ...+|+++.+.+
T Consensus       295 ~~~~g~l~~~~~~~~~~~l~~~~~a~~~~~--~~~~~~~kvvv~~~~  339 (339)
T PRK10083        295 WLSKGLIDPEKLITHTFDFQHVADAIELFE--KDQRHCCKVLLTFAE  339 (339)
T ss_pred             HHHcCCCChHHheeeeecHHHHHHHHHHHh--cCCCceEEEEEecCC
Confidence            9999999973  678999999999999987  54 356899998753

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.84  E-value=4.8e-19  Score=137.09  Aligned_cols=180  Identities=17%  Similarity=0.221  Sum_probs=145.4

Q ss_pred             ccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChh---HHHh-HHHhhCC
Q psy2961           3 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE---ELRN-ISRDASI   78 (202)
Q Consensus         3 ~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~---~~~~-~~~~~~~   78 (202)
                      .+.+++++|++|+|+|+ +++|++++++|+..|+++++++++++    +.+.++++|.+.++++.   ++.. +...+.+
T Consensus       153 ~~~~~~~~g~~vli~g~-g~~g~~~~~~a~~~G~~v~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  227 (336)
T cd08276         153 FGLGPLKPGDTVLVQGT-GGVSLFALQFAKAAGARVIATSSSDE----KLERAKALGADHVINYRTTPDWGEEVLKLTGG  227 (336)
T ss_pred             HhhcCCCCCCEEEEECC-cHHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHcCCCEEEcCCcccCHHHHHHHHcCC
Confidence            34567899999999965 59999999999999999888887665    57888888998888643   3555 7777777


Q ss_pred             CCCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHH
Q psy2961          79 PKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTE  158 (202)
Q Consensus        79 ~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  158 (202)
                      .++|+++|++++......+++++++|+++.+|.............++.+++++.++....           .+.+.++.+
T Consensus       228 ~~~d~~i~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~  296 (336)
T cd08276         228 RGVDHVVEVGGPGTLAQSIKAVAPGGVISLIGFLSGFEAPVLLLPLLTKGATLRGIAVGS-----------RAQFEAMNR  296 (336)
T ss_pred             CCCcEEEECCChHHHHHHHHhhcCCCEEEEEccCCCCccCcCHHHHhhcceEEEEEecCc-----------HHHHHHHHH
Confidence            789999999998777779999999999999986554333444556678899999887542           346888888


Q ss_pred             HHHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         159 MMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       159 ~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      ++.++.+.+.+...+++++++++|+.+.  ++...+|+++++
T Consensus       297 l~~~~~l~~~~~~~~~~~~~~~a~~~~~--~~~~~~kvv~~~  336 (336)
T cd08276         297 AIEAHRIRPVIDRVFPFEEAKEAYRYLE--SGSHFGKVVIRV  336 (336)
T ss_pred             HHHcCCcccccCcEEeHHHHHHHHHHHH--hCCCCceEEEeC
Confidence            9989988877778999999999999998  777788999863

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.84  E-value=2.9e-19  Score=136.69  Aligned_cols=171  Identities=22%  Similarity=0.285  Sum_probs=136.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeC-hhHHHhHHHhhCCCCCeEEEecC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT-EEELRNISRDASIPKPKLALNCV   88 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~-~~~~~~~~~~~~~~~~d~vid~~   88 (202)
                      +|++|+|+|+++++|++++++|+..|++++.++++++    +.+.++++|++.++. ++++      .. .++|+++|++
T Consensus       132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~----~~~~~~~~g~~~~~~~~~~~------~~-~~~d~vl~~~  200 (305)
T cd08270         132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPA----RAEGLRELGAAEVVVGGSEL------SG-APVDLVVDSV  200 (305)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHcCCcEEEeccccc------cC-CCceEEEECC
Confidence            5999999999889999999999999999999887665    688888899876653 2211      11 4799999999


Q ss_pred             CCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccc--cCeeEEEEechhHhhhcccHHHHHHHHHHHHHHHHcCCCC
Q psy2961          89 GGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIF--KDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLA  166 (202)
Q Consensus        89 g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  166 (202)
                      |+......+++++++|+++.+|........++...+..  ++.++.++....       +....+.+..+.+++.++++.
T Consensus       201 g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~  273 (305)
T cd08270         201 GGPQLARALELLAPGGTVVSVGSSSGEPAVFNPAAFVGGGGGRRLYTFFLYD-------GEPLAADLARLLGLVAAGRLD  273 (305)
T ss_pred             CcHHHHHHHHHhcCCCEEEEEeccCCCcccccHHHHhcccccceEEEEEccC-------HHHHHHHHHHHHHHHHCCCcc
Confidence            98877779999999999999986543223344444443  588888877553       133456789999999999999


Q ss_pred             CCcceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         167 APAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       167 ~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      +.+.++++++++++||+.+.  ++...+|+|+++
T Consensus       274 ~~~~~~~~~~~~~~a~~~~~--~~~~~gkvvi~~  305 (305)
T cd08270         274 PRIGWRGSWTEIDEAAEALL--ARRFRGKAVLDV  305 (305)
T ss_pred             ceeccEEcHHHHHHHHHHHH--cCCCCceEEEeC
Confidence            87778999999999999998  888889999874

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=99.84  E-value=2.2e-19  Score=140.72  Aligned_cols=180  Identities=20%  Similarity=0.262  Sum_probs=136.4

Q ss_pred             ccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCc-EEEEecCcccHHHHHHHHHhcCCceEeChh--HHHh-HHHhhCC
Q psy2961           3 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRDASI   78 (202)
Q Consensus         3 ~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~--~~~~-~~~~~~~   78 (202)
                      .+.+.+++|++|+|+|+ |++|++++|+|+..|++ ++++.++++    +.+.++++|++.++++.  ++.+ +.+.+ +
T Consensus       179 ~~~~~~~~g~~vlI~g~-g~vG~~~~~la~~~G~~~v~~~~~~~~----k~~~~~~~g~~~~i~~~~~~~~~~v~~~~-~  252 (365)
T cd08278         179 LNVLKPRPGSSIAVFGA-GAVGLAAVMAAKIAGCTTIIAVDIVDS----RLELAKELGATHVINPKEEDLVAAIREIT-G  252 (365)
T ss_pred             hhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHH----HHHHHHHcCCcEEecCCCcCHHHHHHHHh-C
Confidence            44567889999999976 59999999999999996 555544443    67888899999888753  4555 66666 6


Q ss_pred             CCCeEEEecCCCch-HHHHHHhcccCcEEEEEeccC-CCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHH
Q psy2961          79 PKPKLALNCVGGNS-ATNLLRTLVSKGVMVTYGGMS-REPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNEL  156 (202)
Q Consensus        79 ~~~d~vid~~g~~~-~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  156 (202)
                      .++|+++||+|++. ....+++++++|+++.+|... .....++...++.+++++.++....+        ...+.++++
T Consensus       253 ~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~  324 (365)
T cd08278         253 GGVDYALDTTGVPAVIEQAVDALAPRGTLALVGAPPPGAEVTLDVNDLLVSGKTIRGVIEGDS--------VPQEFIPRL  324 (365)
T ss_pred             CCCcEEEECCCCcHHHHHHHHHhccCCEEEEeCcCCCCCccccCHHHHhhcCceEEEeecCCc--------ChHHHHHHH
Confidence            78999999998654 456899999999999998543 22234555555578888888764321        114567888


Q ss_pred             HHHHHcCCCCC-CcceeechhhHHHHHHHHhhhcCCCCceEEEe
Q psy2961         157 TEMMRTGKLAA-PAHKFVTLKNFQEALMNTMSIQGKSGVKYYID  199 (202)
Q Consensus       157 ~~~~~~g~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~  199 (202)
                      ++++++|++.+ .+...++++++++|++.+.  ++.. .|+|++
T Consensus       325 ~~~l~~g~l~~~~~~~~~~l~~~~~a~~~~~--~~~~-~k~~~~  365 (365)
T cd08278         325 IELYRQGKFPFDKLVTFYPFEDINQAIADSE--SGKV-IKPVLR  365 (365)
T ss_pred             HHHHHcCCCChHHheEEecHHHHHHHHHHHH--CCCc-eEEEEC
Confidence            99999999865 3556899999999999988  6654 488874

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=99.84  E-value=2.2e-19  Score=141.74  Aligned_cols=178  Identities=18%  Similarity=0.226  Sum_probs=136.7

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCc-EEEEecCcccHHHHHHHHHhcCCceEeChh---HHHh-HHHhhCC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLGADYVFTEE---ELRN-ISRDASI   78 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~---~~~~-~~~~~~~   78 (202)
                      +.+++++|++|+|+|+ |++|++++++|+..|+. ++++.++++    +.+.+++++...++++.   ++.. +.+.+.+
T Consensus       178 ~~~~~~~g~~VlV~g~-G~vG~~~~~la~~~g~~~vi~~~~~~~----~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~  252 (386)
T cd08283         178 ELAEVKPGDTVAVWGC-GPVGLFAARSAKLLGAERVIAIDRVPE----RLEMARSHLGAETINFEEVDDVVEALRELTGG  252 (386)
T ss_pred             hhccCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHH----HHHHHHHcCCcEEEcCCcchHHHHHHHHHcCC
Confidence            4567889999999976 59999999999999985 777776665    68888888444566542   3566 7777776


Q ss_pred             CCCeEEEecCCCc----------------------hHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEec
Q psy2961          79 PKPKLALNCVGGN----------------------SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWM  136 (202)
Q Consensus        79 ~~~d~vid~~g~~----------------------~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~  136 (202)
                      .++|++||++|+.                      ....++++++++|+++.+|........++....+.+++++.+...
T Consensus       253 ~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~  332 (386)
T cd08283         253 RGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGVYGGTVNKFPIGAAMNKGLTLRMGQT  332 (386)
T ss_pred             CCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcCCCCCcCccCHHHHHhCCcEEEeccC
Confidence            7899999999764                      234588999999999999865443233444456678888888652


Q ss_pred             hhHhhhcccHHHHHHHHHHHHHHHHcCCCCCC--cceeechhhHHHHHHHHhhhcCC-CCceEEEe
Q psy2961         137 TRWQKENKESAERKSMMNELTEMMRTGKLAAP--AHKFVTLKNFQEALMNTMSIQGK-SGVKYYID  199 (202)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~a~~~~~~~~~~-~~gkvv~~  199 (202)
                      .           ..+.+.++++++.++++.+.  +.++|+++++++||+.+.  ++. ..+|+|++
T Consensus       333 ~-----------~~~~~~~~~~~l~~g~l~~~~~~~~~~~l~~~~~a~~~~~--~~~~~~~k~~~~  385 (386)
T cd08283         333 H-----------VQRYLPRLLELIESGELDPSFIITHRLPLEDAPEAYKIFD--KKEDGCIKVVLK  385 (386)
T ss_pred             C-----------chHHHHHHHHHHHcCCCChhHceEEEecHHHHHHHHHHHH--hCCCCeEEEEec
Confidence            2           24568889999999999874  568899999999999988  655 56899985

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=99.84  E-value=6.7e-19  Score=135.41  Aligned_cols=191  Identities=17%  Similarity=0.275  Sum_probs=148.5

Q ss_pred             ccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeCh--hHHHh-HHHhhCCC
Q psy2961           3 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE--EELRN-ISRDASIP   79 (202)
Q Consensus         3 ~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~--~~~~~-~~~~~~~~   79 (202)
                      .+...+.+|++|+|+|+++++|++++++++..|+++++++++++    +.+.++++|.+.+++.  .++.. +.....+.
T Consensus       132 ~~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  207 (325)
T TIGR02824       132 FQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGSDE----KCAACEALGADIAINYREEDFVEVVKAETGGK  207 (325)
T ss_pred             HHhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHcCCcEEEecCchhHHHHHHHHcCCC
Confidence            35677899999999999889999999999999999998887765    4667788888777754  34545 66666666


Q ss_pred             CCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHH
Q psy2961          80 KPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEM  159 (202)
Q Consensus        80 ~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (202)
                      ++|+++|++|+......+++++++|+++.+|........++...++.+++++.+.....+.... .+......+.++.++
T Consensus       208 ~~d~~i~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  286 (325)
T TIGR02824       208 GVDVILDIVGGSYLNRNIKALALDGRIVQIGFQGGRKAELDLGPLLAKRLTITGSTLRARPVAE-KAAIAAELREHVWPL  286 (325)
T ss_pred             CeEEEEECCchHHHHHHHHhhccCcEEEEEecCCCCcCCCChHHHHhcCCEEEEEehhhcchhh-hHHHHHHHHHHHHHH
Confidence            8999999999877677899999999999998644322244444455889999988755421111 113346678888999


Q ss_pred             HHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         160 MRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       160 ~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      +.++.+.+.+++.+++++++++++.+.  .+...+|+++++
T Consensus       287 ~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~  325 (325)
T TIGR02824       287 LASGRVRPVIDKVFPLEDAAQAHALME--SGDHIGKIVLTV  325 (325)
T ss_pred             HHCCcccCccccEEeHHHHHHHHHHHH--hCCCcceEEEeC
Confidence            999999877788999999999999988  777788998864

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>cd05195 enoyl_red enoyl reductase of polyketide synthase

Probab=99.84  E-value=6.8e-19  Score=133.16  Aligned_cols=186  Identities=20%  Similarity=0.312  Sum_probs=144.7

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcC--CceEeChh--HHHh-HHHhhCC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG--ADYVFTEE--ELRN-ISRDASI   78 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg--~~~v~~~~--~~~~-~~~~~~~   78 (202)
                      +..++++|++|+|+|+++++|++++|+|+..|++++.++++++    +.+.+++++  ++.++++.  ++.. +.+.+.+
T Consensus       102 ~~~~~~~g~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (293)
T cd05195         102 DLARLQKGESVLIHAAAGGVGQAAIQLAQHLGAEVFATVGSEE----KREFLRELGGPVDHIFSSRDLSFADGILRATGG  177 (293)
T ss_pred             HHhccCCCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHhCCCcceEeecCchhHHHHHHHHhCC
Confidence            4567899999999998889999999999999999999887765    577777887  66677643  4555 7777766


Q ss_pred             CCCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCc-CCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHH
Q psy2961          79 PKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPV-QIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELT  157 (202)
Q Consensus        79 ~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  157 (202)
                      .++|+++|++|+......+++++++|+++.+|....... .++. ..+.+++++.......+....+  ....+.+.++.
T Consensus       178 ~~~d~vi~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  254 (293)
T cd05195         178 RGVDVVLNSLSGELLRASWRCLAPFGRFVEIGKRDILSNSKLGM-RPFLRNVSFSSVDLDQLARERP--ELLRELLREVL  254 (293)
T ss_pred             CCceEEEeCCCchHHHHHHHhcccCceEEEeeccccccCCccch-hhhccCCeEEEEeHHHHhhhCh--HHHHHHHHHHH
Confidence            789999999999877779999999999999985543211 1222 2345567777777655543222  34466789999


Q ss_pred             HHHHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEE
Q psy2961         158 EMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYI  198 (202)
Q Consensus       158 ~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~  198 (202)
                      +++.++++.+..+..++++++.++|+.+.  .+...+|+++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~~ivv  293 (293)
T cd05195         255 ELLEAGVLKPLPPTVVPSASEIDAFRLMQ--SGKHIGKVVL  293 (293)
T ss_pred             HHHHCCCcccCCCeeechhhHHHHHHHHh--cCCCCceecC
Confidence            99999999888888999999999999998  7777788874

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=99.84  E-value=3.6e-19  Score=136.53  Aligned_cols=180  Identities=19%  Similarity=0.210  Sum_probs=138.5

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCc-EEEEecCcccHHHHHHHHHhcCCceEeCh--hHHHh-HHHhhCCCC
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLGADYVFTE--EELRN-ISRDASIPK   80 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg~~~v~~~--~~~~~-~~~~~~~~~   80 (202)
                      .+++++|++|+|+|+ +++|.+++|+|+..|++ +++++++++    +.+.++++|++.++++  .++.. +.+.+.+.+
T Consensus       124 ~~~~~~~~~vlI~g~-g~vg~~~~~la~~~g~~~v~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~  198 (312)
T cd08269         124 RGWIRAGKTVAVIGA-GFIGLLFLQLAAAAGARRVIAIDRRPA----RLALARELGATEVVTDDSEAIVERVRELTGGAG  198 (312)
T ss_pred             hcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCHH----HHHHHHHhCCceEecCCCcCHHHHHHHHcCCCC
Confidence            567889999999975 59999999999999999 877776654    5778888999888864  34556 777777778


Q ss_pred             CeEEEecCCCch-HHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHH
Q psy2961          81 PKLALNCVGGNS-ATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEM  159 (202)
Q Consensus        81 ~d~vid~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (202)
                      +|+++||+|+.. ....+++|+++|+++.+|........++...+..++..+.++.....       ....+.+++++++
T Consensus       199 vd~vld~~g~~~~~~~~~~~l~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~  271 (312)
T cd08269         199 ADVVIEAVGHQWPLDLAGELVAERGRLVIFGYHQDGPRPVPFQTWNWKGIDLINAVERDP-------RIGLEGMREAVKL  271 (312)
T ss_pred             CCEEEECCCCHHHHHHHHHHhccCCEEEEEccCCCCCcccCHHHHhhcCCEEEEecccCc-------cchhhHHHHHHHH
Confidence            999999998754 45589999999999999855432333444445567777766543221       2235679999999


Q ss_pred             HHcCCCCC--CcceeechhhHHHHHHHHhhhcC-CCCceEEE
Q psy2961         160 MRTGKLAA--PAHKFVTLKNFQEALMNTMSIQG-KSGVKYYI  198 (202)
Q Consensus       160 ~~~g~~~~--~~~~~~~~~~~~~a~~~~~~~~~-~~~gkvv~  198 (202)
                      ++++.+.+  .+.++++++++++|++.+.  ++ ..++|+++
T Consensus       272 ~~~~~l~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~~~~~~  311 (312)
T cd08269         272 IADGRLDLGSLLTHEFPLEELGDAFEAAR--RRPDGFIKGVI  311 (312)
T ss_pred             HHcCCCCchhheeeeecHHHHHHHHHHHH--hCCCCceEEEe
Confidence            99999987  3568899999999999998  55 44689887

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=99.84  E-value=3e-19  Score=140.16  Aligned_cols=180  Identities=20%  Similarity=0.281  Sum_probs=139.2

Q ss_pred             ccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCc-EEEEecCcccHHHHHHHHHhcCCceEeChh--HHHh-HHHhhCC
Q psy2961           3 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRDASI   78 (202)
Q Consensus         3 ~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~--~~~~-~~~~~~~   78 (202)
                      .+.+.+.++++|+|+|+ +++|++++++|+..|++ +++++++++    +.+.++++|++.++++.  ++.. +.+...+
T Consensus       180 ~~~~~~~~g~~VlI~g~-g~vG~~~~~lak~~G~~~vi~~~~s~~----~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~  254 (367)
T cd08263         180 KHAADVRPGETVAVIGV-GGVGSSAIQLAKAFGASPIIAVDVRDE----KLAKAKELGATHTVNAAKEDAVAAIREITGG  254 (367)
T ss_pred             HhcccCCCCCEEEEECC-cHHHHHHHHHHHHcCCCeEEEEeCCHH----HHHHHHHhCCceEecCCcccHHHHHHHHhCC
Confidence            34566789999999965 59999999999999998 666666654    57788889999888753  4555 7766666


Q ss_pred             CCCeEEEecCCCc-hHHHHHHhcccCcEEEEEeccCCC-CcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHH
Q psy2961          79 PKPKLALNCVGGN-SATNLLRTLVSKGVMVTYGGMSRE-PVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNEL  156 (202)
Q Consensus        79 ~~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  156 (202)
                      .++|+++|++++. .....+++++++|+++.++..... ...++...++.+++++.++....          ..+.++++
T Consensus       255 ~~~d~vld~vg~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~  324 (367)
T cd08263         255 RGVDVVVEALGKPETFKLALDVVRDGGRAVVVGLAPGGATAEIPITRLVRRGIKIIGSYGAR----------PRQDLPEL  324 (367)
T ss_pred             CCCCEEEEeCCCHHHHHHHHHHHhcCCEEEEEccCCCCCccccCHHHHhhCCeEEEecCCCC----------cHHHHHHH
Confidence            7899999999987 666689999999999999854322 22334444446777877743211          13568889


Q ss_pred             HHHHHcCCCCCC--cceeechhhHHHHHHHHhhhcCCCCceEEEe
Q psy2961         157 TEMMRTGKLAAP--AHKFVTLKNFQEALMNTMSIQGKSGVKYYID  199 (202)
Q Consensus       157 ~~~~~~g~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~  199 (202)
                      +++++++.+.+.  +++.++++++.+||+.+.  ++...||+|++
T Consensus       325 ~~ll~~~~l~~~~~~~~~~~~~~~~~a~~~~~--~~~~~g~~~~~  367 (367)
T cd08263         325 VGLAASGKLDPEALVTHKYKLEEINEAYENLR--KGLIHGRAIVE  367 (367)
T ss_pred             HHHHHcCCCCcccceeEEecHHHHHHHHHHHh--cCCccceeeeC
Confidence            999999999874  568899999999999998  88888999874

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=99.84  E-value=6.9e-19  Score=135.09  Aligned_cols=188  Identities=20%  Similarity=0.302  Sum_probs=146.1

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChh--HHHh-HHHhhCCCC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRDASIPK   80 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~--~~~~-~~~~~~~~~   80 (202)
                      +.+.+.++++|+|+|+++++|++++++++..|++++.+.++++    +.+.++++|++.+++..  ++.. +...+.+.+
T Consensus       133 ~~~~~~~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  208 (323)
T cd05276         133 QLGGLKAGETVLIHGGASGVGTAAIQLAKALGARVIATAGSEE----KLEACRALGADVAINYRTEDFAEEVKEATGGRG  208 (323)
T ss_pred             HhcCCCCCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcCCHH----HHHHHHHcCCCEEEeCCchhHHHHHHHHhCCCC
Confidence            4567889999999999889999999999999999888877655    56777888988877643  4445 666666678


Q ss_pred             CeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHH
Q psy2961          81 PKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMM  160 (202)
Q Consensus        81 ~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (202)
                      +|+++|++|+......+++++++|+++.++........++...++.+++++.++......... .+......+.++.+++
T Consensus       209 ~d~vi~~~g~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  287 (323)
T cd05276         209 VDVILDMVGGDYLARNLRALAPDGRLVLIGLLGGAKAELDLAPLLRKRLTLTGSTLRSRSLEE-KAALAAAFREHVWPLF  287 (323)
T ss_pred             eEEEEECCchHHHHHHHHhhccCCEEEEEecCCCCCCCCchHHHHHhCCeEEEeeccchhhhc-cHHHHHHHHHHHHHHH
Confidence            999999999888777899999999999998554333334444455788888888765432111 1133456778888999


Q ss_pred             HcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEE
Q psy2961         161 RTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYI  198 (202)
Q Consensus       161 ~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~  198 (202)
                      .++++.+..++.|+++++++|++.+.  ++...+|+++
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~kvv~  323 (323)
T cd05276         288 ASGRIRPVIDKVFPLEEAAEAHRRME--SNEHIGKIVL  323 (323)
T ss_pred             HCCCccCCcceEEcHHHHHHHHHHHH--hCCCcceEeC
Confidence            99999887788999999999999998  7777788874

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=99.84  E-value=2.5e-19  Score=141.31  Aligned_cols=174  Identities=18%  Similarity=0.293  Sum_probs=133.9

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcccHHHHHHHHHhcCCceEeChh-----HHHh-HHHhhCC
Q psy2961           6 NSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTEE-----ELRN-ISRDASI   78 (202)
Q Consensus         6 ~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~-----~~~~-~~~~~~~   78 (202)
                      +++++|++|+|+|+ |++|++++|+|+..|+ +++++.++++    +.+.++++|++.++++.     ++.. +.+.+.+
T Consensus       199 ~~~~~g~~VlV~g~-g~vG~~ai~lA~~~G~~~vi~~~~~~~----~~~~~~~~g~~~~v~~~~~~~~~~~~~v~~~~~g  273 (384)
T cd08265         199 GGFRPGAYVVVYGA-GPIGLAAIALAKAAGASKVIAFEISEE----RRNLAKEMGADYVFNPTKMRDCLSGEKVMEVTKG  273 (384)
T ss_pred             CCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHH----HHHHHHHcCCCEEEcccccccccHHHHHHHhcCC
Confidence            67899999999975 5999999999999999 5766665554    67888999999888754     5556 7777877


Q ss_pred             CCCeEEEecCCCc--hHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHH
Q psy2961          79 PKPKLALNCVGGN--SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNEL  156 (202)
Q Consensus        79 ~~~d~vid~~g~~--~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  156 (202)
                      .++|+++|++|++  .....+++|+++|+++.+|.... ...++...+..+..++.+.....          ....+.++
T Consensus       274 ~gvDvvld~~g~~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~~~~  342 (384)
T cd08265         274 WGADIQVEAAGAPPATIPQMEKSIAINGKIVYIGRAAT-TVPLHLEVLQVRRAQIVGAQGHS----------GHGIFPSV  342 (384)
T ss_pred             CCCCEEEECCCCcHHHHHHHHHHHHcCCEEEEECCCCC-CCcccHHHHhhCceEEEEeeccC----------CcchHHHH
Confidence            8899999999974  44568999999999999985432 22333344555666777765321          13458889


Q ss_pred             HHHHHcCCCCCC--cceeechhhHHHHHHHHhhhcCCCCceEEE
Q psy2961         157 TEMMRTGKLAAP--AHKFVTLKNFQEALMNTMSIQGKSGVKYYI  198 (202)
Q Consensus       157 ~~~~~~g~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~  198 (202)
                      ++++.++.+.+.  ++++|+++++++||+.+.  ++ ..+|+|+
T Consensus       343 ~~ll~~g~l~~~~~~~~~~~~~~~~~a~~~~~--~~-~~~kvvv  383 (384)
T cd08265         343 IKLMASGKIDMTKIITARFPLEGIMEAIKAAS--ER-TDGKITI  383 (384)
T ss_pred             HHHHHcCCCChHHheEEEeeHHHHHHHHHHHh--cC-CCceEEe
Confidence            999999999864  568899999999999966  54 5788875

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=99.84  E-value=4.9e-19  Score=137.69  Aligned_cols=175  Identities=21%  Similarity=0.314  Sum_probs=134.6

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCc-EEEEecCcccHHHHHHHHHhcCCceEeChh--H---HHh-HHHhh
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLGADYVFTEE--E---LRN-ISRDA   76 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~--~---~~~-~~~~~   76 (202)
                      +.+++++|++|+|.|+ |++|++++|+|+..|++ +++++++++    +.+.++++|++.++++.  +   +.. +.+.+
T Consensus       156 ~~~~~~~g~~vlI~g~-g~vG~~a~~lak~~G~~~v~~~~~~~~----~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~~~  230 (343)
T cd05285         156 RRAGVRPGDTVLVFGA-GPIGLLTAAVAKAFGATKVVVTDIDPS----RLEFAKELGATHTVNVRTEDTPESAEKIAELL  230 (343)
T ss_pred             HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCHH----HHHHHHHcCCcEEeccccccchhHHHHHHHHh
Confidence            4678899999999876 59999999999999998 666666654    57888889999988753  2   255 77777


Q ss_pred             CCCCCeEEEecCCCc-hHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHH
Q psy2961          77 SIPKPKLALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNE  155 (202)
Q Consensus        77 ~~~~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  155 (202)
                      .+.++|+++||+|+. .....+++++++|+++.+|.... ...++...+..+++.+.++...            .+.+.+
T Consensus       231 ~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~  297 (343)
T cd05285         231 GGKGPDVVIECTGAESCIQTAIYATRPGGTVVLVGMGKP-EVTLPLSAASLREIDIRGVFRY------------ANTYPT  297 (343)
T ss_pred             CCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCC-CCccCHHHHhhCCcEEEEeccC------------hHHHHH
Confidence            777899999999986 55668999999999999984432 2333433455667777765432            145788


Q ss_pred             HHHHHHcCCCC--CCcceeechhhHHHHHHHHhhhcC-CCCceEEE
Q psy2961         156 LTEMMRTGKLA--APAHKFVTLKNFQEALMNTMSIQG-KSGVKYYI  198 (202)
Q Consensus       156 ~~~~~~~g~~~--~~~~~~~~~~~~~~a~~~~~~~~~-~~~gkvv~  198 (202)
                      +++++.++.+.  +.+.++|+++++.+|++.+.  ++ ...+|++|
T Consensus       298 ~~~~l~~~~l~~~~~~~~~~~l~~~~~a~~~~~--~~~~~~~k~~~  341 (343)
T cd05285         298 AIELLASGKVDVKPLITHRFPLEDAVEAFETAA--KGKKGVIKVVI  341 (343)
T ss_pred             HHHHHHcCCCCchHhEEEEEeHHHHHHHHHHHH--cCCCCeeEEEE
Confidence            88999999875  34567899999999999998  65 45689998

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=99.83  E-value=6.6e-19  Score=137.05  Aligned_cols=178  Identities=17%  Similarity=0.254  Sum_probs=139.9

Q ss_pred             ccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChh---HHHh-HHHhhCC
Q psy2961           3 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE---ELRN-ISRDASI   78 (202)
Q Consensus         3 ~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~---~~~~-~~~~~~~   78 (202)
                      .+.+++.++++|+|+|+ +++|++++|+|+..|+++++++++++    +.+.++++|++.++++.   ++.. +.....+
T Consensus       158 ~~~~~~~~~~~vlV~g~-g~vg~~~~~~a~~~G~~vi~~~~~~~----~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~  232 (345)
T cd08260         158 VHQARVKPGEWVAVHGC-GGVGLSAVMIASALGARVIAVDIDDD----KLELARELGAVATVNASEVEDVAAAVRDLTGG  232 (345)
T ss_pred             HHccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEeCCHH----HHHHHHHhCCCEEEccccchhHHHHHHHHhCC
Confidence            34567889999999995 69999999999999999999887776    57888889999888753   4445 6666655


Q ss_pred             CCCeEEEecCCCc-hHHHHHHhcccCcEEEEEeccCCCC--cCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHH
Q psy2961          79 PKPKLALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREP--VQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNE  155 (202)
Q Consensus        79 ~~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  155 (202)
                       ++|++|||+|+. .....+++++++|+++.+|......  ..++...++.+++++.+.....           .+.+++
T Consensus       233 -~~d~vi~~~g~~~~~~~~~~~l~~~g~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~  300 (345)
T cd08260         233 -GAHVSVDALGIPETCRNSVASLRKRGRHVQVGLTLGEEAGVALPMDRVVARELEIVGSHGMP-----------AHRYDA  300 (345)
T ss_pred             -CCCEEEEcCCCHHHHHHHHHHhhcCCEEEEeCCcCCCCCccccCHHHHhhcccEEEeCCcCC-----------HHHHHH
Confidence             899999999864 4456899999999999998554322  2334444456778888765321           346888


Q ss_pred             HHHHHHcCCCCCC--cceeechhhHHHHHHHHhhhcCCCCceEEEe
Q psy2961         156 LTEMMRTGKLAAP--AHKFVTLKNFQEALMNTMSIQGKSGVKYYID  199 (202)
Q Consensus       156 ~~~~~~~g~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~  199 (202)
                      ++++++++++.+.  +...++++++++||+.+.  .+...+|+|++
T Consensus       301 ~~~l~~~~~i~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~~~v~~  344 (345)
T cd08260         301 MLALIASGKLDPEPLVGRTISLDEAPDALAAMD--DYATAGITVIT  344 (345)
T ss_pred             HHHHHHcCCCChhhheeEEecHHHHHHHHHHHH--cCCCCceEEec
Confidence            8999999998864  568899999999999999  88888898864

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=99.83  E-value=6.4e-19  Score=136.21  Aligned_cols=174  Identities=25%  Similarity=0.451  Sum_probs=137.3

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhCCCCCeEE
Q psy2961           6 NSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLA   84 (202)
Q Consensus         6 ~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~~~~~d~v   84 (202)
                      +++.++++|+|+|++|++|++++++++..|++++.++++++    +.+.+++++.+.+++..++.+ +.+.   .++|++
T Consensus       158 ~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~d~v  230 (332)
T cd08259         158 AGVKKGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPE----KLKILKELGADYVIDGSKFSEDVKKL---GGADVV  230 (332)
T ss_pred             hCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCHH----HHHHHHHcCCcEEEecHHHHHHHHhc---cCCCEE
Confidence            67889999999999999999999999999999988887665    567778888888887655545 5554   279999


Q ss_pred             EecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHHHcCC
Q psy2961          85 LNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGK  164 (202)
Q Consensus        85 id~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  164 (202)
                      ++++|.......+++++++|+++.++........+.......++.++.++...           ....++++.+++.+|.
T Consensus       231 ~~~~g~~~~~~~~~~~~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~  299 (332)
T cd08259         231 IELVGSPTIEESLRSLNKGGRLVLIGNVTPDPAPLRPGLLILKEIRIIGSISA-----------TKADVEEALKLVKEGK  299 (332)
T ss_pred             EECCChHHHHHHHHHhhcCCEEEEEcCCCCCCcCCCHHHHHhCCcEEEEecCC-----------CHHHHHHHHHHHHcCC
Confidence            99999888777899999999999998654332222322233466666665311           1455788889999999


Q ss_pred             CCCCcceeechhhHHHHHHHHhhhcCCCCceEEEe
Q psy2961         165 LAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYID  199 (202)
Q Consensus       165 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~  199 (202)
                      +.+.+.++|+++++++||+.+.  ++...+|++++
T Consensus       300 l~~~~~~~~~~~~~~~a~~~~~--~~~~~~kvv~~  332 (332)
T cd08259         300 IKPVIDRVVSLEDINEALEDLK--SGKVVGRIVLK  332 (332)
T ss_pred             CccceeEEEcHHHHHHHHHHHH--cCCcccEEEeC
Confidence            9888888999999999999999  77778899874

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=99.83  E-value=5e-20  Score=123.91  Aligned_cols=113  Identities=27%  Similarity=0.443  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChh--HHHh-HHHhhCCCCCeEEEecCCCch-HHHHH
Q psy2961          22 ACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRDASIPKPKLALNCVGGNS-ATNLL   97 (202)
Q Consensus        22 ~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~--~~~~-~~~~~~~~~~d~vid~~g~~~-~~~~~   97 (202)
                      ++|++++|+|++.|++|++++++++    +++.++++|++.++++.  ++.+ +++.+++.++|+||||+|.+. +...+
T Consensus         1 ~vG~~a~q~ak~~G~~vi~~~~~~~----k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~   76 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGAKVIATDRSEE----KLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGSGDTLQEAI   76 (130)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEESSHH----HHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSSHHHHHHHH
T ss_pred             ChHHHHHHHHHHcCCEEEEEECCHH----HHHHHHhhcccccccccccccccccccccccccceEEEEecCcHHHHHHHH
Confidence            6899999999999999999988775    78999999999999753  4777 999998889999999999554 45689


Q ss_pred             HhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechh
Q psy2961          98 RTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTR  138 (202)
Q Consensus        98 ~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~  138 (202)
                      ++++++|+++.+|.......+++...++.+++++.|++.++
T Consensus        77 ~~l~~~G~~v~vg~~~~~~~~~~~~~~~~~~~~i~g~~~~~  117 (130)
T PF00107_consen   77 KLLRPGGRIVVVGVYGGDPISFNLMNLMFKEITIRGSWGGS  117 (130)
T ss_dssp             HHEEEEEEEEEESSTSTSEEEEEHHHHHHTTEEEEEESSGG
T ss_pred             HHhccCCEEEEEEccCCCCCCCCHHHHHhCCcEEEEEccCC
Confidence            99999999999997775666788888999999999999775

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=99.83  E-value=9.4e-19  Score=134.41  Aligned_cols=188  Identities=23%  Similarity=0.354  Sum_probs=146.6

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChh--HHHh-HHHhhCCCC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRDASIPK   80 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~--~~~~-~~~~~~~~~   80 (202)
                      +..++.+|++|+|+|+++++|++++++|+..|++++.++++++    +.+.++++|++.+++..  ++.. +...+.+.+
T Consensus       133 ~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~  208 (323)
T cd08241         133 RRARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEE----KLALARALGADHVIDYRDPDLRERVKALTGGRG  208 (323)
T ss_pred             HhcCCCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHH----HHHHHHHcCCceeeecCCccHHHHHHHHcCCCC
Confidence            3567889999999999889999999999999999999887765    57788888988777643  4555 777776678


Q ss_pred             CeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHH
Q psy2961          81 PKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMM  160 (202)
Q Consensus        81 ~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (202)
                      +|.++|++|+......+++++++|+++.+|........+.....+.+++++.+.....+....  +....+.+.++.+++
T Consensus       209 ~d~v~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  286 (323)
T cd08241         209 VDVVYDPVGGDVFEASLRSLAWGGRLLVIGFASGEIPQIPANLLLLKNISVVGVYWGAYARRE--PELLRANLAELFDLL  286 (323)
T ss_pred             cEEEEECccHHHHHHHHHhhccCCEEEEEccCCCCcCcCCHHHHhhcCcEEEEEecccccchh--HHHHHHHHHHHHHHH
Confidence            999999999877777899999999999998543221112233345678888887755443322  134467888999999


Q ss_pred             HcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEe
Q psy2961         161 RTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYID  199 (202)
Q Consensus       161 ~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~  199 (202)
                      .++.+.+..+..|++++++++|+.+.  .+...+|++++
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~vvv~  323 (323)
T cd08241         287 AEGKIRPHVSAVFPLEQAAEALRALA--DRKATGKVVLT  323 (323)
T ss_pred             HCCCcccccceEEcHHHHHHHHHHHH--hCCCCCcEEeC
Confidence            99999877788999999999999988  67777888863

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=99.83  E-value=1.2e-18  Score=133.86  Aligned_cols=185  Identities=20%  Similarity=0.277  Sum_probs=145.3

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChh--HHHh-HHHhhCCCC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRDASIPK   80 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~--~~~~-~~~~~~~~~   80 (202)
                      +.+++.+|++|+|+|+++++|++++++++..|+++++++++++    +.+.+.++|++.+++..  +... +.+.+.+.+
T Consensus       138 ~~~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  213 (325)
T cd08253         138 HRAGAKAGETVLVHGGSGAVGHAAVQLARWAGARVIATASSAE----GAELVRQAGADAVFNYRAEDLADRILAATAGQG  213 (325)
T ss_pred             HHhCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHcCCCEEEeCCCcCHHHHHHHHcCCCc
Confidence            4577889999999999889999999999999999998887765    57777888988887643  3444 666666678


Q ss_pred             CeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHH
Q psy2961          81 PKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMM  160 (202)
Q Consensus        81 ~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (202)
                      +|+++||+++......+++++++|+++.++... ....++...++.++.++.+...+..     .+....+.+..+.+++
T Consensus       214 ~d~vi~~~~~~~~~~~~~~l~~~g~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~  287 (325)
T cd08253         214 VDVIIEVLANVNLAKDLDVLAPGGRIVVYGSGG-LRGTIPINPLMAKEASIRGVLLYTA-----TPEERAAAAEAIAAGL  287 (325)
T ss_pred             eEEEEECCchHHHHHHHHhhCCCCEEEEEeecC-CcCCCChhHHHhcCceEEeeehhhc-----CHHHHHHHHHHHHHHH
Confidence            999999999887777889999999999998654 2223444444567777777653321     1244567788888999


Q ss_pred             HcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         161 RTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       161 ~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      .++.+.+.+.+.+++++++++++.+.  .+...+|+++++
T Consensus       288 ~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~kvv~~~  325 (325)
T cd08253         288 ADGALRPVIAREYPLEEAAAAHEAVE--SGGAIGKVVLDP  325 (325)
T ss_pred             HCCCccCccccEEcHHHHHHHHHHHH--cCCCcceEEEeC
Confidence            99999887788999999999999998  778888999863

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=99.83  E-value=6.2e-19  Score=137.50  Aligned_cols=177  Identities=19%  Similarity=0.252  Sum_probs=135.1

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcccHHHHHHHHHhcCCceEeChh--HHHh-HHHhhCCC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRDASIP   79 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~--~~~~-~~~~~~~~   79 (202)
                      +...++++++|+|+|+ +++|++++|+|+..|+ +++++.++++    +.+.++++|++.++++.  ++.. +.+...+ 
T Consensus       169 ~~~~~~~~~~vlI~g~-g~vg~~~~~~a~~~G~~~v~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-  242 (350)
T cd08240         169 KLMPLVADEPVVIIGA-GGLGLMALALLKALGPANIIVVDIDEA----KLEAAKAAGADVVVNGSDPDAAKRIIKAAGG-  242 (350)
T ss_pred             hcccCCCCCEEEEECC-cHHHHHHHHHHHHcCCCeEEEEeCCHH----HHHHHHHhCCcEEecCCCccHHHHHHHHhCC-
Confidence            3444568999999975 6999999999999999 5666655544    67888889998888653  3444 6665555 


Q ss_pred             CCeEEEecCCCc-hHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHH
Q psy2961          80 KPKLALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTE  158 (202)
Q Consensus        80 ~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  158 (202)
                      ++|++||++|.+ .....+++|+++|+++.+|..... ...+......++.++.+.....           .+.+.++++
T Consensus       243 ~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~-~~~~~~~~~~~~~~i~~~~~~~-----------~~~~~~~~~  310 (350)
T cd08240         243 GVDAVIDFVNNSATASLAFDILAKGGKLVLVGLFGGE-ATLPLPLLPLRALTIQGSYVGS-----------LEELRELVA  310 (350)
T ss_pred             CCcEEEECCCCHHHHHHHHHHhhcCCeEEEECCCCCC-CcccHHHHhhcCcEEEEcccCC-----------HHHHHHHHH
Confidence            899999999864 455689999999999999854432 2233333445778887766432           245788899


Q ss_pred             HHHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         159 MMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       159 ~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      +++++.+.+.+...++++++++||+.+.  .+...+|+++++
T Consensus       311 ll~~~~i~~~~~~~~~~~~~~~a~~~~~--~~~~~gkvvv~~  350 (350)
T cd08240         311 LAKAGKLKPIPLTERPLSDVNDALDDLK--AGKVVGRAVLKP  350 (350)
T ss_pred             HHHcCCCccceeeEEcHHHHHHHHHHHH--cCCccceEEecC
Confidence            9999999877778999999999999998  778889999853

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.83  E-value=4.8e-19  Score=136.40  Aligned_cols=167  Identities=18%  Similarity=0.247  Sum_probs=131.6

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeE
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKL   83 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~   83 (202)
                      +..++++|++|+|+|+ |++|++++|+|+.+|+++++++++++    +.+.++++|++.++++.+.      +.+.++|+
T Consensus       149 ~~~~~~~g~~vlV~g~-g~vg~~~~q~a~~~G~~vi~~~~~~~----~~~~~~~~g~~~~~~~~~~------~~~~~~d~  217 (319)
T cd08242         149 EQVPITPGDKVAVLGD-GKLGLLIAQVLALTGPDVVLVGRHSE----KLALARRLGVETVLPDEAE------SEGGGFDV  217 (319)
T ss_pred             HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEcCCHH----HHHHHHHcCCcEEeCcccc------ccCCCCCE
Confidence            4567899999999985 59999999999999999888887765    6888888999887765331      33467999


Q ss_pred             EEecCCCch-HHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHHHc
Q psy2961          84 ALNCVGGNS-ATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRT  162 (202)
Q Consensus        84 vid~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (202)
                      ++||+|+.. ....+++++++|+++..+... ....++...+..++.++.+.+...              ++++.+++++
T Consensus       218 vid~~g~~~~~~~~~~~l~~~g~~v~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~--------------~~~~~~~~~~  282 (319)
T cd08242         218 VVEATGSPSGLELALRLVRPRGTVVLKSTYA-GPASFDLTKAVVNEITLVGSRCGP--------------FAPALRLLRK  282 (319)
T ss_pred             EEECCCChHHHHHHHHHhhcCCEEEEEcccC-CCCccCHHHheecceEEEEEeccc--------------HHHHHHHHHc
Confidence            999998754 455889999999999876433 233445555667888888865321              6778899999


Q ss_pred             CCCC--CCcceeechhhHHHHHHHHhhhcCCCCceEEEe
Q psy2961         163 GKLA--APAHKFVTLKNFQEALMNTMSIQGKSGVKYYID  199 (202)
Q Consensus       163 g~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~  199 (202)
                      ++++  +.+.++|+++++++||+.+.  .+. .+|+|++
T Consensus       283 ~~l~~~~~~~~~~~l~~~~~a~~~~~--~~~-~~k~vi~  318 (319)
T cd08242         283 GLVDVDPLITAVYPLEEALEAFERAA--EPG-ALKVLLR  318 (319)
T ss_pred             CCCChhhceEEEEeHHHHHHHHHHHh--cCC-ceEEEeC
Confidence            9994  45779999999999999998  665 5799886

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=99.83  E-value=1.7e-18  Score=134.81  Aligned_cols=178  Identities=17%  Similarity=0.221  Sum_probs=134.1

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcccHHHHHHHHHhcCCceEeChh--HHHh-HHHhhCCC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRDASIP   79 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~--~~~~-~~~~~~~~   79 (202)
                      ..+++++|++|+|.|+ |++|++++|+|+..|+ +++++.++++    +.+.++++|++.++++.  ++.. +...+.+.
T Consensus       161 ~~~~~~~~~~VlI~g~-g~vg~~~iqlak~~g~~~v~~~~~~~~----~~~~~~~~g~~~vi~~~~~~~~~~i~~~~~~~  235 (347)
T cd05278         161 ELAGIKPGSTVAVIGA-GPVGLCAVAGARLLGAARIIAVDSNPE----RLDLAKEAGATDIINPKNGDIVEQILELTGGR  235 (347)
T ss_pred             hhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEeCCHH----HHHHHHHhCCcEEEcCCcchHHHHHHHHcCCC
Confidence            3567889999999775 6999999999999997 6666644443    57788889999888753  4555 77767667


Q ss_pred             CCeEEEecCCC-chHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHH
Q psy2961          80 KPKLALNCVGG-NSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTE  158 (202)
Q Consensus        80 ~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  158 (202)
                      ++|++||++|+ ......+++|+++|+++.+|..............+.+++++.+.....           .+.++++.+
T Consensus       236 ~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~  304 (347)
T cd05278         236 GVDCVIEAVGFEETFEQAVKVVRPGGTIANVGVYGKPDPLPLLGEWFGKNLTFKTGLVPV-----------RARMPELLD  304 (347)
T ss_pred             CCcEEEEccCCHHHHHHHHHHhhcCCEEEEEcCCCCCcccCccchhhhceeEEEeeccCc-----------hhHHHHHHH
Confidence            89999999988 455668999999999999985433221112223346777777654211           456889999


Q ss_pred             HHHcCCCCCC--cceeechhhHHHHHHHHhhhcCCC-CceEEEe
Q psy2961         159 MMRTGKLAAP--AHKFVTLKNFQEALMNTMSIQGKS-GVKYYID  199 (202)
Q Consensus       159 ~~~~g~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~-~gkvv~~  199 (202)
                      ++.++.+.+.  +...++++++++|++.+.  .++. .+|+|++
T Consensus       305 ~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~~~~vv~  346 (347)
T cd05278         305 LIEEGKIDPSKLITHRFPLDDILKAYRLFD--NKPDGCIKVVIR  346 (347)
T ss_pred             HHHcCCCChhHcEEEEecHHHHHHHHHHHh--cCCCCceEEEec
Confidence            9999999874  467899999999999988  6665 6799875

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=99.83  E-value=1.7e-18  Score=134.16  Aligned_cols=180  Identities=23%  Similarity=0.322  Sum_probs=142.9

Q ss_pred             ccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChh--HHHh-HHHhhCCC
Q psy2961           3 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRDASIP   79 (202)
Q Consensus         3 ~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~--~~~~-~~~~~~~~   79 (202)
                      .+..++.++++|+|+|+++++|++++++++..|++++.+.++++    +.+.++.++.+.+++..  +... +...+.+.
T Consensus       159 ~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (342)
T cd08266         159 VTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSED----KLERAKELGADYVIDYRKEDFVREVRELTGKR  234 (342)
T ss_pred             HHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHcCCCeEEecCChHHHHHHHHHhCCC
Confidence            34567889999999999999999999999999999988877665    56777778887777542  3444 65656556


Q ss_pred             CCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHH
Q psy2961          80 KPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEM  159 (202)
Q Consensus        80 ~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (202)
                      ++|+++|++|.......+++++++|+++.++........++....+.+++++.+.....           ...+.++.++
T Consensus       235 ~~d~~i~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~  303 (342)
T cd08266         235 GVDVVVEHVGAATWEKSLKSLARGGRLVTCGATTGYEAPIDLRHVFWRQLSILGSTMGT-----------KAELDEALRL  303 (342)
T ss_pred             CCcEEEECCcHHHHHHHHHHhhcCCEEEEEecCCCCCCCcCHHHHhhcceEEEEEecCC-----------HHHHHHHHHH
Confidence            89999999998877778999999999999986654333334334467788888776432           3458888999


Q ss_pred             HHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEe
Q psy2961         160 MRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYID  199 (202)
Q Consensus       160 ~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~  199 (202)
                      ++++.+.+.+++.|+++++++|++.+.  .+...+|++++
T Consensus       304 l~~~~l~~~~~~~~~~~~~~~a~~~~~--~~~~~~kvv~~  341 (342)
T cd08266         304 VFRGKLKPVIDSVFPLEEAAEAHRRLE--SREQFGKIVLT  341 (342)
T ss_pred             HHcCCcccceeeeEcHHHHHHHHHHHH--hCCCCceEEEe
Confidence            999999887788999999999999998  77778899986

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=99.83  E-value=7.3e-19  Score=137.09  Aligned_cols=176  Identities=19%  Similarity=0.282  Sum_probs=134.3

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChh--HHHh-HHHhhCCCC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRDASIPK   80 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~--~~~~-~~~~~~~~~   80 (202)
                      +.+++++|++|+|.|+ |++|++++++|+.+|++++.++++.++   +.+.++++|++.++++.  ++.. +.+.+++.+
T Consensus       168 ~~~~~~~g~~vlI~g~-g~vG~~~~~~a~~~G~~~v~~~~~~~~---~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~  243 (350)
T cd08256         168 DRANIKFDDVVVLAGA-GPLGLGMIGAARLKNPKKLIVLDLKDE---RLALARKFGADVVLNPPEVDVVEKIKELTGGYG  243 (350)
T ss_pred             HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEEcCCHH---HHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCC
Confidence            4567899999999555 699999999999999986655554432   67888899999888753  4555 777777778


Q ss_pred             CeEEEecCCCc-hHHHHHHhcccCcEEEEEeccCCCCcCCCcccc-cccCeeEEEEechhHhhhcccHHHHHHHHHHHHH
Q psy2961          81 PKLALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAF-IFKDITLRGHWMTRWQKENKESAERKSMMNELTE  158 (202)
Q Consensus        81 ~d~vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  158 (202)
                      +|+++|++|+. .....+++++++|+++.+|.... ...++...+ ..+++++.++...            ...+.++++
T Consensus       244 vdvvld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~i~~~~~~------------~~~~~~~~~  310 (350)
T cd08256         244 CDIYIEATGHPSAVEQGLNMIRKLGRFVEFSVFGD-PVTVDWSIIGDRKELDVLGSHLG------------PYCYPIAID  310 (350)
T ss_pred             CCEEEECCCChHHHHHHHHHhhcCCEEEEEccCCC-CCccChhHhhcccccEEEEeccC------------chhHHHHHH
Confidence            99999999964 44568999999999999985432 222333222 2456777776533            124778899


Q ss_pred             HHHcCCCCCC--cceeechhhHHHHHHHHhhhcCCCCceEEE
Q psy2961         159 MMRTGKLAAP--AHKFVTLKNFQEALMNTMSIQGKSGVKYYI  198 (202)
Q Consensus       159 ~~~~g~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~  198 (202)
                      ++.+|.+.+.  +.++|+++++++||+.+.  +++..+|+++
T Consensus       311 ~~~~g~l~~~~~~~~~~~l~~~~~a~~~~~--~~~~~~kvv~  350 (350)
T cd08256         311 LIASGRLPTDGIVTHQFPLEDFEEAFELMA--RGDDSIKVVL  350 (350)
T ss_pred             HHHcCCCChhHheEEEeEHHHHHHHHHHHH--hCCCceEEeC
Confidence            9999999874  678999999999999999  7787889875

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family

Probab=99.83  E-value=9.9e-19  Score=135.85  Aligned_cols=178  Identities=20%  Similarity=0.270  Sum_probs=131.8

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhH------HHhHHHhhC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE------LRNISRDAS   77 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~------~~~~~~~~~   77 (202)
                      ..+++++|++|+|+|+ +++|.+++|+|+.+|++++.++++.++   +.+.++++|++.++++.+      +..+.....
T Consensus       155 ~~~~~~~g~~VlI~g~-g~vg~~~~~la~~~G~~~v~~~~~~~~---~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~  230 (341)
T cd08262         155 RRARLTPGEVALVIGC-GPIGLAVIAALKARGVGPIVASDFSPE---RRALALAMGADIVVDPAADSPFAAWAAELARAG  230 (341)
T ss_pred             HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCHH---HHHHHHHcCCcEEEcCCCcCHHHHHHHHHHHhC
Confidence            3567899999999986 699999999999999986666654432   678888999988887432      112333445


Q ss_pred             CCCCeEEEecCCCc-hHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHH
Q psy2961          78 IPKPKLALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNEL  156 (202)
Q Consensus        78 ~~~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  156 (202)
                      +.++|+++|++|+. .....+++++++|+++.+|...... .+.....+.+++++.++...           ..+.+.++
T Consensus       231 ~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~  298 (341)
T cd08262         231 GPKPAVIFECVGAPGLIQQIIEGAPPGGRIVVVGVCMESD-NIEPALAIRKELTLQFSLGY-----------TPEEFADA  298 (341)
T ss_pred             CCCCCEEEECCCCHHHHHHHHHHhccCCEEEEECCCCCCC-ccCHHHHhhcceEEEEEecc-----------cHHHHHHH
Confidence            56799999999985 4556899999999999998553221 12222223466666654321           13357889


Q ss_pred             HHHHHcCCCCCC--cceeechhhHHHHHHHHhhhcCCCCceEEEe
Q psy2961         157 TEMMRTGKLAAP--AHKFVTLKNFQEALMNTMSIQGKSGVKYYID  199 (202)
Q Consensus       157 ~~~~~~g~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~  199 (202)
                      ++++.+|.+.+.  +.++++++++++||+.+.  +++..+|+|++
T Consensus       299 ~~l~~~g~i~~~~~i~~~~~l~~~~~a~~~~~--~~~~~~kvvv~  341 (341)
T cd08262         299 LDALAEGKVDVAPMVTGTVGLDGVPDAFEALR--DPEHHCKILVD  341 (341)
T ss_pred             HHHHHcCCCChHHheEEEeeHHHHHHHHHHHh--cCCCceEEEeC
Confidence            999999999864  468999999999999999  88888999974

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=99.83  E-value=1.3e-18  Score=134.81  Aligned_cols=177  Identities=19%  Similarity=0.259  Sum_probs=138.9

Q ss_pred             ccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChh--HHHh-HHHhhCCC
Q psy2961           3 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRDASIP   79 (202)
Q Consensus         3 ~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~--~~~~-~~~~~~~~   79 (202)
                      .+..+++++++|||.|+ +++|++++++|+..|+++++++++++    +.+.++++|.+.++++.  +... + ....+.
T Consensus       158 ~~~~~~~~~~~vli~g~-g~vG~~~~~la~~~G~~V~~~~~s~~----~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~  231 (338)
T cd08254         158 VRAGEVKPGETVLVIGL-GGLGLNAVQIAKAMGAAVIAVDIKEE----KLELAKELGADEVLNSLDDSPKDKK-AAGLGG  231 (338)
T ss_pred             HhccCCCCCCEEEEECC-cHHHHHHHHHHHHcCCEEEEEcCCHH----HHHHHHHhCCCEEEcCCCcCHHHHH-HHhcCC
Confidence            44567899999999865 59999999999999999888887765    57788889998888643  3444 5 555667


Q ss_pred             CCeEEEecCCCc-hHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHH
Q psy2961          80 KPKLALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTE  158 (202)
Q Consensus        80 ~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  158 (202)
                      ++|+++||+|.. .....+++|+++|+++.+|... ....++...++.++.++.+++...           .+.+..+.+
T Consensus       232 ~~D~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~  299 (338)
T cd08254         232 GFDVIFDFVGTQPTFEDAQKAVKPGGRIVVVGLGR-DKLTVDLSDLIARELRIIGSFGGT-----------PEDLPEVLD  299 (338)
T ss_pred             CceEEEECCCCHHHHHHHHHHhhcCCEEEEECCCC-CCCccCHHHHhhCccEEEEeccCC-----------HHHHHHHHH
Confidence            899999999865 4456899999999999998543 223344455667777777755321           456888899


Q ss_pred             HHHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         159 MMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       159 ~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      +++++.+.+. .+.+++++++++++.+.  +++..+|+|+.+
T Consensus       300 ll~~~~l~~~-~~~~~~~~~~~a~~~~~--~~~~~~kvv~~~  338 (338)
T cd08254         300 LIAKGKLDPQ-VETRPLDEIPEVLERLH--KGKVKGRVVLVP  338 (338)
T ss_pred             HHHcCCCccc-ceeEcHHHHHHHHHHHH--cCCccceEEEeC
Confidence            9999999877 67899999999999999  888889999864

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>smart00829 PKS_ER Enoylreductase

Probab=99.83  E-value=2.3e-18  Score=130.13  Aligned_cols=185  Identities=22%  Similarity=0.351  Sum_probs=141.5

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCC--ceEeCh--hHHHh-HHHhhCC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA--DYVFTE--EELRN-ISRDASI   78 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~--~~v~~~--~~~~~-~~~~~~~   78 (202)
                      +...+.+|++|+|+|+.+++|++++++|+..|+++++++++++    +.+.++++|+  +.++++  .++.. +.+.+.+
T Consensus        98 ~~~~~~~g~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  173 (288)
T smart00829       98 DLARLRPGESVLIHAAAGGVGQAAIQLAQHLGAEVFATAGSPE----KRDFLRELGIPDDHIFSSRDLSFADEILRATGG  173 (288)
T ss_pred             HHhCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHcCCChhheeeCCCccHHHHHHHHhCC
Confidence            4567889999999998889999999999999999999887765    5778888998  666654  24555 6666666


Q ss_pred             CCCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCC-CcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHH
Q psy2961          79 PKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSRE-PVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELT  157 (202)
Q Consensus        79 ~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  157 (202)
                      .++|+++|++++......+++++++|+++.+|..... ...++... +.+++++.+.....+. ..  +....+.+.++.
T Consensus       174 ~~~d~vi~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~  249 (288)
T smart00829      174 RGVDVVLNSLAGEFLDASLRCLAPGGRFVEIGKRDIRDNSQLGMAP-FRRNVSYHAVDLDALE-EG--PDRIRELLAEVL  249 (288)
T ss_pred             CCcEEEEeCCCHHHHHHHHHhccCCcEEEEEcCcCCccccccchhh-hcCCceEEEEEHHHhh-cC--hHHHHHHHHHHH
Confidence            7899999999976666789999999999999854321 11223322 4667777777655443 11  133456678889


Q ss_pred             HHHHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEE
Q psy2961         158 EMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYI  198 (202)
Q Consensus       158 ~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~  198 (202)
                      +++.++++.+...+.|++++++++++.+.  .+...+|+++
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ivv  288 (288)
T smart00829      250 ELFAEGVLRPLPVTVFPISDVEDAFRYMQ--QGKHIGKVVL  288 (288)
T ss_pred             HHHHCCCccCcCceEEcHHHHHHHHHHHh--cCCCcceEeC
Confidence            99999998876678899999999999998  7766778764

Enoylreductase in Polyketide synthases.

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.82  E-value=1.6e-18  Score=134.55  Aligned_cols=172  Identities=19%  Similarity=0.305  Sum_probs=136.2

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEE
Q psy2961           6 NSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLAL   85 (202)
Q Consensus         6 ~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vi   85 (202)
                      ..+++|++|+|.|+ +++|++++++|+..|++++.++++++    +.+.++++|++.+++..+...... . +.++|++|
T Consensus       165 ~~~~~g~~vlV~g~-g~vG~~~~~~a~~~G~~v~~~~~~~~----~~~~~~~~g~~~vi~~~~~~~~~~-~-~~~~d~v~  237 (337)
T cd05283         165 NGVGPGKRVGVVGI-GGLGHLAVKFAKALGAEVTAFSRSPS----KKEDALKLGADEFIATKDPEAMKK-A-AGSLDLII  237 (337)
T ss_pred             cCCCCCCEEEEECC-cHHHHHHHHHHHHcCCeEEEEcCCHH----HHHHHHHcCCcEEecCcchhhhhh-c-cCCceEEE
Confidence            45789999999875 59999999999999999888887765    578888899998887543211211 1 36799999


Q ss_pred             ecCCCch-HHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHHHcCC
Q psy2961          86 NCVGGNS-ATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGK  164 (202)
Q Consensus        86 d~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  164 (202)
                      ||+|+.. ....+++++++|+++.+|..... ..++...++.+++++.++....           .+.++.+++++.+++
T Consensus       238 ~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~i~~~~~~~-----------~~~~~~~~~~~~~~~  305 (337)
T cd05283         238 DTVSASHDLDPYLSLLKPGGTLVLVGAPEEP-LPVPPFPLIFGRKSVAGSLIGG-----------RKETQEMLDFAAEHG  305 (337)
T ss_pred             ECCCCcchHHHHHHHhcCCCEEEEEeccCCC-CccCHHHHhcCceEEEEecccC-----------HHHHHHHHHHHHhCC
Confidence            9999885 56689999999999999865432 2455555667899999877542           345888889999999


Q ss_pred             CCCCcceeechhhHHHHHHHHhhhcCCCCceEEEe
Q psy2961         165 LAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYID  199 (202)
Q Consensus       165 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~  199 (202)
                      +.+. .+.++++++++||+.+.  +++..||+|++
T Consensus       306 l~~~-~~~~~~~~~~~a~~~~~--~~~~~~k~v~~  337 (337)
T cd05283         306 IKPW-VEVIPMDGINEALERLE--KGDVRYRFVLD  337 (337)
T ss_pred             Cccc-eEEEEHHHHHHHHHHHH--cCCCcceEeeC
Confidence            9875 47899999999999999  88888999874

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=99.82  E-value=1.2e-18  Score=135.70  Aligned_cols=177  Identities=19%  Similarity=0.238  Sum_probs=135.0

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCC-CcEEEEecCcccHHHHHHHHHhcCCceEeChh--HHHh-HHHhhCCC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWG-LKTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRDASIP   79 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g-~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~--~~~~-~~~~~~~~   79 (202)
                      ...++.+|++|+|.|+ |++|++++|+|+..| .+++++.++++    +.+.++++|++.++++.  ++.. +.+.+.+.
T Consensus       160 ~~~~~~~g~~vlI~g~-g~~g~~~~~~a~~~G~~~v~~~~~~~~----~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~  234 (345)
T cd08286         160 LNGKVKPGDTVAIVGA-GPVGLAALLTAQLYSPSKIIMVDLDDN----RLEVAKKLGATHTVNSAKGDAIEQVLELTDGR  234 (345)
T ss_pred             hhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHH----HHHHHHHhCCCceeccccccHHHHHHHHhCCC
Confidence            4567889999999886 599999999999999 67766444333    67888899999888753  4545 66666667


Q ss_pred             CCeEEEecCCCchH-HHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHH
Q psy2961          80 KPKLALNCVGGNSA-TNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTE  158 (202)
Q Consensus        80 ~~d~vid~~g~~~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  158 (202)
                      ++|+++||+|+... ..++++++++|+++.+|... ....++...++.+++++.+....            .+.+.++.+
T Consensus       235 ~~d~vld~~g~~~~~~~~~~~l~~~g~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~  301 (345)
T cd08286         235 GVDVVIEAVGIPATFELCQELVAPGGHIANVGVHG-KPVDLHLEKLWIKNITITTGLVD------------TNTTPMLLK  301 (345)
T ss_pred             CCCEEEECCCCHHHHHHHHHhccCCcEEEEecccC-CCCCcCHHHHhhcCcEEEeecCc------------hhhHHHHHH
Confidence            89999999986544 45789999999999998433 23445555556788888775322            134788889


Q ss_pred             HHHcCCCCCC--cceeechhhHHHHHHHHhhhcCC--CCceEEEee
Q psy2961         159 MMRTGKLAAP--AHKFVTLKNFQEALMNTMSIQGK--SGVKYYIDF  200 (202)
Q Consensus       159 ~~~~g~~~~~--~~~~~~~~~~~~a~~~~~~~~~~--~~gkvv~~~  200 (202)
                      +++++.+.+.  ++++++++++++||+.+.  ...  ...|++|.+
T Consensus       302 ~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~--~~~~~~~~k~~~~~  345 (345)
T cd08286         302 LVSSGKLDPSKLVTHRFKLSEIEKAYDTFS--AAAKHKALKVIIDF  345 (345)
T ss_pred             HHHcCCCChHHcEEeEeeHHHHHHHHHHHh--ccCCCCeeEEEEeC
Confidence            9999998863  568999999999999988  542  456999864

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.82  E-value=2.2e-18  Score=132.66  Aligned_cols=185  Identities=18%  Similarity=0.283  Sum_probs=144.3

Q ss_pred             ccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChh-HHHh-HHHhhCCCC
Q psy2961           3 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE-ELRN-ISRDASIPK   80 (202)
Q Consensus         3 ~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~-~~~~-~~~~~~~~~   80 (202)
                      .+.+++.+|++++|+|+.+++|++++++|+..|++++.++++ +    +.+.++++|.+.+++.. ++.. +...+.+.+
T Consensus       137 ~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~-~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  211 (326)
T cd08272         137 VDRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGARVYATASS-E----KAAFARSLGADPIIYYRETVVEYVAEHTGGRG  211 (326)
T ss_pred             HHhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEech-H----HHHHHHHcCCCEEEecchhHHHHHHHhcCCCC
Confidence            456788999999999988899999999999999999988866 4    57888889988877632 2555 777777778


Q ss_pred             CeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechh--HhhhcccHHHHHHHHHHHHH
Q psy2961          81 PKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTR--WQKENKESAERKSMMNELTE  158 (202)
Q Consensus        81 ~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~  158 (202)
                      +|+++|++++......+++++++|+++.++...  .  .+......+++++.+.....  ....  .+....+.+..+.+
T Consensus       212 ~d~v~~~~~~~~~~~~~~~l~~~g~~v~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  285 (326)
T cd08272         212 FDVVFDTVGGETLDASFEAVALYGRVVSILGGA--T--HDLAPLSFRNATYSGVFTLLPLLTGE--GRAHHGEILREAAR  285 (326)
T ss_pred             CcEEEECCChHHHHHHHHHhccCCEEEEEecCC--c--cchhhHhhhcceEEEEEccccccccc--chhhHHHHHHHHHH
Confidence            999999999877667899999999999998553  1  22222336777777776432  1111  12445678899999


Q ss_pred             HHHcCCCCCCcc-eeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         159 MMRTGKLAAPAH-KFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       159 ~~~~g~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      ++.++.+.+.++ +.|++++++++|+.+.  ++...+|+++++
T Consensus       286 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~vv~~~  326 (326)
T cd08272         286 LVERGQLRPLLDPRTFPLEEAAAAHARLE--SGSARGKIVIDV  326 (326)
T ss_pred             HHHCCCcccccccceecHHHHHHHHHHHH--cCCcccEEEEEC
Confidence            999999987655 8999999999999998  777788999864

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=99.82  E-value=1.6e-18  Score=134.37  Aligned_cols=186  Identities=18%  Similarity=0.257  Sum_probs=140.4

Q ss_pred             cccCCCC-----CCEEEEeCCCcHHHHHHHHHHHHCC-CcEEEEecCcccHHHHHHHHHhcCCceEeChh-HHHh-HHHh
Q psy2961           4 DYNSLSP-----GDVVIQNGANSACGQNVIQIARHWG-LKTINIVRNRDDIDKLKSYLKSLGADYVFTEE-ELRN-ISRD   75 (202)
Q Consensus         4 ~~~~~~~-----g~~VlI~g~~~~vG~~~i~la~~~g-~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~-~~~~-~~~~   75 (202)
                      +.+++.+     |++|+|+|++|++|++++|+|+..| +++++++++++    +.+.++++|++.++++. ++.. +...
T Consensus       138 ~~~~~~~~~~~~g~~vlV~g~~g~vg~~~~~~a~~~G~~~v~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~i~~~  213 (336)
T cd08252         138 DRLGISEDAENEGKTLLIIGGAGGVGSIAIQLAKQLTGLTVIATASRPE----SIAWVKELGADHVINHHQDLAEQLEAL  213 (336)
T ss_pred             HhcCCCCCcCCCCCEEEEEcCCchHHHHHHHHHHHcCCcEEEEEcCChh----hHHHHHhcCCcEEEeCCccHHHHHHhh
Confidence            3455666     9999999988899999999999999 99999887765    57888899998888754 4444 5533


Q ss_pred             hCCCCCeEEEecCCCc-hHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhh-hcccHHHHHHHH
Q psy2961          76 ASIPKPKLALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQK-ENKESAERKSMM  153 (202)
Q Consensus        76 ~~~~~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~  153 (202)
                       .+.++|+++|++|+. .....+++++++|+++.+|...   ..++...+..++.++.+.....+.. ..+.+....+.+
T Consensus       214 -~~~~~d~vl~~~~~~~~~~~~~~~l~~~g~~v~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (336)
T cd08252         214 -GIEPVDYIFCLTDTDQHWDAMAELIAPQGHICLIVDPQ---EPLDLGPLKSKSASFHWEFMFTRSMFQTPDMIEQHEIL  289 (336)
T ss_pred             -CCCCCCEEEEccCcHHHHHHHHHHhcCCCEEEEecCCC---CcccchhhhcccceEEEEEeeccccccccchhhHHHHH
Confidence             345799999999964 5556899999999999998542   2344444446788888766543111 111112445778


Q ss_pred             HHHHHHHHcCCCCCCcc---eeechhhHHHHHHHHhhhcCCCCceEEEe
Q psy2961         154 NELTEMMRTGKLAAPAH---KFVTLKNFQEALMNTMSIQGKSGVKYYID  199 (202)
Q Consensus       154 ~~~~~~~~~g~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~~gkvv~~  199 (202)
                      .++.+++.+|.+.+.+.   ..++++++++||+.+.  ++...+|++++
T Consensus       290 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~~vv~~  336 (336)
T cd08252         290 NEVADLLDAGKLKTTLTETLGPINAENLREAHALLE--SGKTIGKIVLE  336 (336)
T ss_pred             HHHHHHHHCCCEecceeeeecCCCHHHHHHHHHHHH--cCCccceEEeC
Confidence            99999999999987543   3479999999999999  77888899874

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=99.82  E-value=1.7e-18  Score=134.78  Aligned_cols=176  Identities=17%  Similarity=0.267  Sum_probs=135.4

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChh--HHHh-HHHhhCCCCC
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRDASIPKP   81 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~--~~~~-~~~~~~~~~~   81 (202)
                      .+++++|++|+|.|+ |++|++++|+|+..|++++.++++.++   +.+.++++|++.++++.  ++.. +.+.+.+.++
T Consensus       163 ~~~~~~g~~vlI~g~-g~vg~~~~~lak~~G~~~v~~~~~~~~---~~~~~~~~ga~~v~~~~~~~~~~~i~~~~~~~~~  238 (345)
T cd08287         163 SAGVRPGSTVVVVGD-GAVGLCAVLAAKRLGAERIIAMSRHED---RQALAREFGATDIVAERGEEAVARVRELTGGVGA  238 (345)
T ss_pred             hcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHH---HHHHHHHcCCceEecCCcccHHHHHHHhcCCCCC
Confidence            467889999999775 599999999999999975544544432   67888999999999764  3445 7777766789


Q ss_pred             eEEEecCCCch-HHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHH
Q psy2961          82 KLALNCVGGNS-ATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMM  160 (202)
Q Consensus        82 d~vid~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (202)
                      |+++|++|++. ....+++++++|+++.++.... ...++....+.+++++.+...           ...+.+.++++++
T Consensus       239 d~il~~~g~~~~~~~~~~~l~~~g~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~  306 (345)
T cd08287         239 DAVLECVGTQESMEQAIAIARPGGRVGYVGVPHG-GVELDVRELFFRNVGLAGGPA-----------PVRRYLPELLDDV  306 (345)
T ss_pred             CEEEECCCCHHHHHHHHHhhccCCEEEEecccCC-CCccCHHHHHhcceEEEEecC-----------CcHHHHHHHHHHH
Confidence            99999998754 4558999999999999885542 333444355678888877432           2245789999999


Q ss_pred             HcCCCCCC--cceeechhhHHHHHHHHhhhcCCCCceEEEe
Q psy2961         161 RTGKLAAP--AHKFVTLKNFQEALMNTMSIQGKSGVKYYID  199 (202)
Q Consensus       161 ~~g~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~  199 (202)
                      .++.+.+.  +.++++++++++|++.+.  .... .|++|+
T Consensus       307 ~~~~l~~~~~~~~~~~l~~~~~a~~~~~--~~~~-~k~~~~  344 (345)
T cd08287         307 LAGRINPGRVFDLTLPLDEVAEGYRAMD--ERRA-IKVLLR  344 (345)
T ss_pred             HcCCCCHHHhEEeeecHHHHHHHHHHHh--CCCc-eEEEeC
Confidence            99999873  568899999999999987  6554 499985

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08249 enoyl_reductase_like enoyl_reductase_like

Probab=99.82  E-value=1.9e-18  Score=134.16  Aligned_cols=179  Identities=26%  Similarity=0.284  Sum_probs=132.5

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeCh--hHHHh-HHHhhCCCCCeE
Q psy2961           7 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE--EELRN-ISRDASIPKPKL   83 (202)
Q Consensus         7 ~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~--~~~~~-~~~~~~~~~~d~   83 (202)
                      +.+++++|+|+|+++++|++++++|+..|++++++++ ++    +.+.++++|++.++++  .++.+ +.+.++ .++|+
T Consensus       151 ~~~~~~~vlI~ga~g~vg~~~~~~a~~~G~~v~~~~~-~~----~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~-~~~d~  224 (339)
T cd08249         151 PASKGKPVLIWGGSSSVGTLAIQLAKLAGYKVITTAS-PK----NFDLVKSLGADAVFDYHDPDVVEDIRAATG-GKLRY  224 (339)
T ss_pred             CCCCCCEEEEEcChhHHHHHHHHHHHHcCCeEEEEEC-cc----cHHHHHhcCCCEEEECCCchHHHHHHHhcC-CCeeE
Confidence            4479999999999889999999999999999998874 44    5788889999888865  34555 766554 67999


Q ss_pred             EEecCCC-chHHHHHHhccc--CcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhh-hcccHHHHHHHHHHHHHH
Q psy2961          84 ALNCVGG-NSATNLLRTLVS--KGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQK-ENKESAERKSMMNELTEM  159 (202)
Q Consensus        84 vid~~g~-~~~~~~~~~l~~--~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~  159 (202)
                      ++|++|+ ......++++++  +|+++.+|......       .+..+..+.......+.. ....+......++.+.++
T Consensus       225 vl~~~g~~~~~~~~~~~l~~~~~g~~v~~g~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (339)
T cd08249         225 ALDCISTPESAQLCAEALGRSGGGKLVSLLPVPEET-------EPRKGVKVKFVLGYTVFGEIPEDREFGEVFWKYLPEL  297 (339)
T ss_pred             EEEeeccchHHHHHHHHHhccCCCEEEEecCCCccc-------cCCCCceEEEEEeeeecccccccccchHHHHHHHHHH
Confidence            9999998 566679999999  99999998554322       111222222222221110 000012335678889999


Q ss_pred             HHcCCCCCCcceeec--hhhHHHHHHHHhhhcCC-CCceEEEee
Q psy2961         160 MRTGKLAAPAHKFVT--LKNFQEALMNTMSIQGK-SGVKYYIDF  200 (202)
Q Consensus       160 ~~~g~~~~~~~~~~~--~~~~~~a~~~~~~~~~~-~~gkvv~~~  200 (202)
                      +.++++.+.+..+++  ++++++||+.+.  .++ ..+|+|+++
T Consensus       298 ~~~~~l~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~~kvvv~~  339 (339)
T cd08249         298 LEEGKLKPHPVRVVEGGLEGVQEGLDLLR--KGKVSGEKLVVRL  339 (339)
T ss_pred             HHcCCccCCCceecCCcHHHHHHHHHHHH--CCCccceEEEEeC
Confidence            999999987667788  999999999998  777 789999874

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=99.82  E-value=1.1e-18  Score=136.78  Aligned_cols=180  Identities=20%  Similarity=0.277  Sum_probs=136.6

Q ss_pred             ccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCc-EEEEecCcccHHHHHHHHHhcCCceEeChh--HHHh-HHHhhCC
Q psy2961           3 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRDASI   78 (202)
Q Consensus         3 ~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~--~~~~-~~~~~~~   78 (202)
                      .+.+++.+|++|+|+|+ +++|++++++|+..|++ +++++++++    +.+.++++|+++++++.  ++.. +.+.+.+
T Consensus       175 ~~~~~~~~g~~vLI~g~-g~vG~a~i~lak~~G~~~Vi~~~~~~~----~~~~~~~~g~~~vv~~~~~~~~~~l~~~~~~  249 (363)
T cd08279         175 VNTARVRPGDTVAVIGC-GGVGLNAIQGARIAGASRIIAVDPVPE----KLELARRFGATHTVNASEDDAVEAVRDLTDG  249 (363)
T ss_pred             HhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCcEEEEcCCHH----HHHHHHHhCCeEEeCCCCccHHHHHHHHcCC
Confidence            45677899999999965 69999999999999997 777766665    57788889998888753  4555 7776666


Q ss_pred             CCCeEEEecCCCc-hHHHHHHhcccCcEEEEEeccCC-CCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHH
Q psy2961          79 PKPKLALNCVGGN-SATNLLRTLVSKGVMVTYGGMSR-EPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNEL  156 (202)
Q Consensus        79 ~~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  156 (202)
                      .++|+++|++++. .....+++++++|+++.++.... ....++...+..++..+.++....        ....+.++++
T Consensus       250 ~~vd~vld~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~  321 (363)
T cd08279         250 RGADYAFEAVGRAATIRQALAMTRKGGTAVVVGMGPPGETVSLPALELFLSEKRLQGSLYGS--------ANPRRDIPRL  321 (363)
T ss_pred             CCCCEEEEcCCChHHHHHHHHHhhcCCeEEEEecCCCCcccccCHHHHhhcCcEEEEEEecC--------cCcHHHHHHH
Confidence            7899999999954 45568999999999999985442 233445555555677777765422        1124668889


Q ss_pred             HHHHHcCCCCCC--cceeechhhHHHHHHHHhhhcCCCCceEE
Q psy2961         157 TEMMRTGKLAAP--AHKFVTLKNFQEALMNTMSIQGKSGVKYY  197 (202)
Q Consensus       157 ~~~~~~g~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~gkvv  197 (202)
                      ++++.++.+.+.  +.++|+++++++||+.+.  +++..+.++
T Consensus       322 ~~l~~~g~l~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~~~~  362 (363)
T cd08279         322 LDLYRAGRLKLDELVTRRYSLDEINEAFADML--AGENARGVI  362 (363)
T ss_pred             HHHHHcCCCCcceeEEEEEcHHHHHHHHHHHh--cCCceeEEe
Confidence            999999999863  668899999999999998  766654443

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=99.82  E-value=1.1e-18  Score=135.57  Aligned_cols=175  Identities=19%  Similarity=0.283  Sum_probs=132.0

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCc-EEEEecCcccHHHHHHHHHhcCCceEeChh--HHHh-HHHhhCCCCCeE
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRDASIPKPKL   83 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~--~~~~-~~~~~~~~~~d~   83 (202)
                      ..+|++|+|.|+ |++|++++|+|+.+|++ ++++.++++    +.+.++++|++.++++.  ++.+ +.+.+.+.++|+
T Consensus       161 ~~~g~~vlV~~~-g~vg~~~~~la~~~G~~~v~~~~~~~~----~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~d~  235 (341)
T PRK05396        161 DLVGEDVLITGA-GPIGIMAAAVAKHVGARHVVITDVNEY----RLELARKMGATRAVNVAKEDLRDVMAELGMTEGFDV  235 (341)
T ss_pred             CCCCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHH----HHHHHHHhCCcEEecCccccHHHHHHHhcCCCCCCE
Confidence            358999999876 59999999999999995 555543443    67888999999988753  4555 777776778999


Q ss_pred             EEecCCCchH-HHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHHHc
Q psy2961          84 ALNCVGGNSA-TNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRT  162 (202)
Q Consensus        84 vid~~g~~~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (202)
                      +|||+|+... ...+++++++|+++.+|.... ...++...+..+++++.++....          ..+.+..+.+++.+
T Consensus       236 v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~~~~~~~~~~  304 (341)
T PRK05396        236 GLEMSGAPSAFRQMLDNMNHGGRIAMLGIPPG-DMAIDWNKVIFKGLTIKGIYGRE----------MFETWYKMSALLQS  304 (341)
T ss_pred             EEECCCCHHHHHHHHHHHhcCCEEEEEecCCC-CCcccHHHHhhcceEEEEEEccC----------ccchHHHHHHHHHc
Confidence            9999987554 558999999999999985442 23334455666777877764211          12335667788888


Q ss_pred             C-CCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEeec
Q psy2961         163 G-KLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  201 (202)
Q Consensus       163 g-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~~  201 (202)
                      + ++.+.+.++++++++++||+.+.  .+. .||++++|+
T Consensus       305 ~~~~~~~~~~~~~l~~~~~a~~~~~--~~~-~gk~vv~~~  341 (341)
T PRK05396        305 GLDLSPIITHRFPIDDFQKGFEAMR--SGQ-SGKVILDWD  341 (341)
T ss_pred             CCChhHheEEEEeHHHHHHHHHHHh--cCC-CceEEEecC
Confidence            8 45555678999999999999998  666 799999875

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=99.82  E-value=1.6e-18  Score=135.87  Aligned_cols=178  Identities=17%  Similarity=0.274  Sum_probs=134.2

Q ss_pred             ccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEec-CcccHHHHHHHHHhcCCceEeChh----HHHh-HHHhh
Q psy2961           3 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVR-NRDDIDKLKSYLKSLGADYVFTEE----ELRN-ISRDA   76 (202)
Q Consensus         3 ~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~-~~~~~~~~~~~~~~lg~~~v~~~~----~~~~-~~~~~   76 (202)
                      .+.+++++|++|||+|+ |++|++++++|+..|+++++++. +++    +.+.++++|++.++++.    ++.+ +.+.+
T Consensus       176 ~~~~~~~~g~~vlI~g~-g~vG~~a~~~a~~~G~~~v~~~~~~~~----~~~~~~~~g~~~~v~~~~~~~~~~~~l~~~~  250 (365)
T cd05279         176 VNTAKVTPGSTCAVFGL-GGVGLSVIMGCKAAGASRIIAVDINKD----KFEKAKQLGATECINPRDQDKPIVEVLTEMT  250 (365)
T ss_pred             HhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHH----HHHHHHHhCCCeecccccccchHHHHHHHHh
Confidence            45678899999999976 59999999999999997555544 443    67888999999888743    4445 66666


Q ss_pred             CCCCCeEEEecCCC-chHHHHHHhcc-cCcEEEEEeccC-CCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHH
Q psy2961          77 SIPKPKLALNCVGG-NSATNLLRTLV-SKGVMVTYGGMS-REPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMM  153 (202)
Q Consensus        77 ~~~~~d~vid~~g~-~~~~~~~~~l~-~~G~~v~~g~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  153 (202)
                      + .++|+++|++|. ......+++++ ++|+++.+|... .....++...+ .++.++.|.+...+.        ..+.+
T Consensus       251 ~-~~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~l~g~~~~~~~--------~~~~~  320 (365)
T cd05279         251 D-GGVDYAFEVIGSADTLKQALDATRLGGGTSVVVGVPPSGTEATLDPNDL-LTGRTIKGTVFGGWK--------SKDSV  320 (365)
T ss_pred             C-CCCcEEEECCCCHHHHHHHHHHhccCCCEEEEEecCCCCCceeeCHHHH-hcCCeEEEEeccCCc--------hHhHH
Confidence            4 689999999986 44456899999 999999998543 22334444444 566778777554332        24568


Q ss_pred             HHHHHHHHcCCCCCC--cceeechhhHHHHHHHHhhhcCCCCceEEE
Q psy2961         154 NELTEMMRTGKLAAP--AHKFVTLKNFQEALMNTMSIQGKSGVKYYI  198 (202)
Q Consensus       154 ~~~~~~~~~g~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~  198 (202)
                      .++++++.++.+.+.  ++++++++++++||+.+.  +++. .|+++
T Consensus       321 ~~~~~l~~~~~l~~~~~~~~~~~l~~~~~a~~~~~--~~~~-~~~~~  364 (365)
T cd05279         321 PKLVALYRQKKFPLDELITHVLPFEEINDGFDLMR--SGES-IRTIL  364 (365)
T ss_pred             HHHHHHHHcCCcchhHheeeeecHHHHHHHHHHHh--CCCc-eeeee
Confidence            889999999998863  678999999999999988  6554 46665

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=99.81  E-value=3.1e-18  Score=132.86  Aligned_cols=176  Identities=18%  Similarity=0.319  Sum_probs=134.3

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHH-CCCcEEEEecCcccHHHHHHHHHhcCCceEeChh---HHHh-HHHhhCC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARH-WGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE---ELRN-ISRDASI   78 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~-~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~---~~~~-~~~~~~~   78 (202)
                      +.+++++|++|+|+|+ |++|++++++|+. .|+++++++++++    +++.++++|++.++++.   ++.. +++.++ 
T Consensus       156 ~~~~~~~g~~vlV~g~-g~vG~~~~~la~~~~g~~v~~~~~~~~----~~~~~~~~g~~~v~~~~~~~~~~~~v~~~~~-  229 (338)
T PRK09422        156 KVSGIKPGQWIAIYGA-GGLGNLALQYAKNVFNAKVIAVDINDD----KLALAKEVGADLTINSKRVEDVAKIIQEKTG-  229 (338)
T ss_pred             HhcCCCCCCEEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCChH----HHHHHHHcCCcEEecccccccHHHHHHHhcC-
Confidence            3567899999999995 6999999999998 5999999988876    68888999999888753   3444 666553 


Q ss_pred             CCCe-EEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHH
Q psy2961          79 PKPK-LALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELT  157 (202)
Q Consensus        79 ~~~d-~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  157 (202)
                       ++| +++++.++......+++++++|+++.+|.... ...++...+..+..++.++....           .+.++++.
T Consensus       230 -~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~  296 (338)
T PRK09422        230 -GAHAAVVTAVAKAAFNQAVDAVRAGGRVVAVGLPPE-SMDLSIPRLVLDGIEVVGSLVGT-----------RQDLEEAF  296 (338)
T ss_pred             -CCcEEEEeCCCHHHHHHHHHhccCCCEEEEEeeCCC-CceecHHHHhhcCcEEEEecCCC-----------HHHHHHHH
Confidence             688 55565665556668999999999999985432 23334444555677776654321           34578899


Q ss_pred             HHHHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEeec
Q psy2961         158 EMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  201 (202)
Q Consensus       158 ~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~~  201 (202)
                      +++.+|.+.+.+ ..++++++++||+.+.  ++...+|+++.+.
T Consensus       297 ~l~~~g~l~~~v-~~~~~~~~~~a~~~~~--~~~~~gkvvv~~~  337 (338)
T PRK09422        297 QFGAEGKVVPKV-QLRPLEDINDIFDEME--QGKIQGRMVIDFT  337 (338)
T ss_pred             HHHHhCCCCccE-EEEcHHHHHHHHHHHH--cCCccceEEEecC
Confidence            999999987654 4689999999999998  8888899998753

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=99.81  E-value=2.7e-18  Score=133.45  Aligned_cols=175  Identities=22%  Similarity=0.366  Sum_probs=134.1

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCc-EEEEecCcccHHHHHHHHHhcCCceEeChh--HHHh-HHHhhCCCCC
Q psy2961           6 NSLSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRDASIPKP   81 (202)
Q Consensus         6 ~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~--~~~~-~~~~~~~~~~   81 (202)
                      .++++|++|+|+|+ |++|++++|+|+..|++ +++++++++    +.+.++++|.+.++++.  ++.. +.+.+.+.++
T Consensus       161 ~~~~~g~~VlV~g~-g~vg~~~~~la~~~g~~~v~~~~~s~~----~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~v  235 (343)
T cd08235         161 AGIKPGDTVLVIGA-GPIGLLHAMLAKASGARKVIVSDLNEF----RLEFAKKLGADYTIDAAEEDLVEKVRELTDGRGA  235 (343)
T ss_pred             cCCCCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCHH----HHHHHHHhCCcEEecCCccCHHHHHHHHhCCcCC
Confidence            47889999999975 59999999999999999 777766655    56777889998888753  4555 6666766789


Q ss_pred             eEEEecCCCc-hHHHHHHhcccCcEEEEEeccCCCC-cCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHH
Q psy2961          82 KLALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREP-VQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEM  159 (202)
Q Consensus        82 d~vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (202)
                      |+++||+++. .....+++++++|+++.++...... ..++...+..+++.+.++....           .+.+++++++
T Consensus       236 d~vld~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~~~~~l  304 (343)
T cd08235         236 DVVIVATGSPEAQAQALELVRKGGRILFFGGLPKGSTVNIDPNLIHYREITITGSYAAS-----------PEDYKEALEL  304 (343)
T ss_pred             CEEEECCCChHHHHHHHHHhhcCCEEEEEeccCCCCCcccCHHHHhhCceEEEEEecCC-----------hhhHHHHHHH
Confidence            9999999976 4556899999999999998543321 2233334455677776655321           3457788999


Q ss_pred             HHcCCCCC--CcceeechhhHHHHHHHHhhhcCCCCceEEEe
Q psy2961         160 MRTGKLAA--PAHKFVTLKNFQEALMNTMSIQGKSGVKYYID  199 (202)
Q Consensus       160 ~~~g~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~  199 (202)
                      ++++.+.+  .+..+|+++++++|++.+.  +++ .+|+|+.
T Consensus       305 ~~~~~l~~~~~~~~~~~~~~~~~a~~~~~--~~~-~~k~vi~  343 (343)
T cd08235         305 IASGKIDVKDLITHRFPLEDIEEAFELAA--DGK-SLKIVIT  343 (343)
T ss_pred             HHcCCCChHHheeeEeeHHHHHHHHHHHh--CCC-cEEEEeC
Confidence            99999874  3567899999999999998  788 8899873

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.81  E-value=7e-18  Score=129.92  Aligned_cols=188  Identities=25%  Similarity=0.364  Sum_probs=146.7

Q ss_pred             ccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChh--HHHh-HHHhhCCC
Q psy2961           3 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRDASIP   79 (202)
Q Consensus         3 ~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~--~~~~-~~~~~~~~   79 (202)
                      ....++.++++|+|+|+++++|++++++++..|++++.++++.+    +.+.++++|.+.++++.  ++.. +.+.+.+.
T Consensus       137 ~~~~~~~~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  212 (328)
T cd08268         137 VELAGLRPGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSE----KRDALLALGAAHVIVTDEEDLVAEVLRITGGK  212 (328)
T ss_pred             HHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHH----HHHHHHHcCCCEEEecCCccHHHHHHHHhCCC
Confidence            34567889999999999889999999999999999999887765    56777888887777643  3444 66666556


Q ss_pred             CCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHH
Q psy2961          80 KPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEM  159 (202)
Q Consensus        80 ~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (202)
                      ++|++++++++......+++++++|+++.+|........++....+.+++++.++...... .  .+......+..+.++
T Consensus       213 ~~d~vi~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~  289 (328)
T cd08268         213 GVDVVFDPVGGPQFAKLADALAPGGTLVVYGALSGEPTPFPLKAALKKSLTFRGYSLDEIT-L--DPEARRRAIAFILDG  289 (328)
T ss_pred             CceEEEECCchHhHHHHHHhhccCCEEEEEEeCCCCCCCCchHHHhhcCCEEEEEeccccc-C--CHHHHHHHHHHHHHH
Confidence            8999999999977777899999999999998554322233433356788888887654322 1  124556778888888


Q ss_pred             HHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEe
Q psy2961         160 MRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYID  199 (202)
Q Consensus       160 ~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~  199 (202)
                      +.++.+.+.....|++++++++++.+.  .+...+|++++
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~vv~~  327 (328)
T cd08268         290 LASGALKPVVDRVFPFDDIVEAHRYLE--SGQQIGKIVVT  327 (328)
T ss_pred             HHCCCCcCCcccEEcHHHHHHHHHHHH--cCCCCceEEEe
Confidence            889998887778999999999999998  77778899876

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=99.81  E-value=2.1e-18  Score=134.10  Aligned_cols=175  Identities=21%  Similarity=0.254  Sum_probs=132.8

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcccHHHHHHHHHhcCCceEeC-hhHHHh-HHHhhCCCCCe
Q psy2961           6 NSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFT-EEELRN-ISRDASIPKPK   82 (202)
Q Consensus         6 ~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~v~~-~~~~~~-~~~~~~~~~~d   82 (202)
                      +++.+|++|+|+|+ |++|++++|+|+..|+ +++++.++++    +.+.++++|+..+.. ..++.. +.+.+.+.++|
T Consensus       163 ~~~~~~~~vlI~g~-g~vg~~~~~~a~~~g~~~v~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~d  237 (344)
T cd08284         163 AQVRPGDTVAVIGC-GPVGLCAVLSAQVLGAARVFAVDPVPE----RLERAAALGAEPINFEDAEPVERVREATEGRGAD  237 (344)
T ss_pred             cCCccCCEEEEECC-cHHHHHHHHHHHHcCCceEEEEcCCHH----HHHHHHHhCCeEEecCCcCHHHHHHHHhCCCCCC
Confidence            66789999999975 5999999999999997 6777754443    677888899763322 234555 77777777899


Q ss_pred             EEEecCCCc-hHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHHH
Q psy2961          83 LALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMR  161 (202)
Q Consensus        83 ~vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (202)
                      ++||++|+. .....+++++++|+++.+|.........+....+.+++++.+..           ....+.+.++++++.
T Consensus       238 vvid~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~  306 (344)
T cd08284         238 VVLEAVGGAAALDLAFDLVRPGGVISSVGVHTAEEFPFPGLDAYNKNLTLRFGR-----------CPVRSLFPELLPLLE  306 (344)
T ss_pred             EEEECCCCHHHHHHHHHhcccCCEEEEECcCCCCCccccHHHHhhcCcEEEEec-----------CCcchhHHHHHHHHH
Confidence            999999975 44568999999999999996553333334445567777776542           112556888999999


Q ss_pred             cCCCCCC--cceeechhhHHHHHHHHhhhcCCCCceEEEe
Q psy2961         162 TGKLAAP--AHKFVTLKNFQEALMNTMSIQGKSGVKYYID  199 (202)
Q Consensus       162 ~g~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~  199 (202)
                      ++.+.+.  +.+++++++++++|+.+.  .++. +|+|++
T Consensus       307 ~~~i~~~~~~~~~~~~~~~~~a~~~~~--~~~~-~k~Vi~  343 (344)
T cd08284         307 SGRLDLEFLIDHRMPLEEAPEAYRLFD--KRKV-LKVVLD  343 (344)
T ss_pred             cCCCChHHhEeeeecHHHHHHHHHHHh--cCCc-eEEEec
Confidence            9998863  568899999999999988  7666 899975

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>PLN02702 L-idonate 5-dehydrogenase

Probab=99.81  E-value=4e-18  Score=133.62  Aligned_cols=177  Identities=21%  Similarity=0.309  Sum_probs=131.5

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeCh----hHHHh-HHHh--h
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE----EELRN-ISRD--A   76 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~----~~~~~-~~~~--~   76 (202)
                      ...++.+|++|+|+|+ |++|++++|+|+..|++++.+++..+   ++.+.++++|++.++++    .++.. +...  .
T Consensus       175 ~~~~~~~g~~vlI~g~-g~vG~~~~~~a~~~G~~~v~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  250 (364)
T PLN02702        175 RRANIGPETNVLVMGA-GPIGLVTMLAARAFGAPRIVIVDVDD---ERLSVAKQLGADEIVLVSTNIEDVESEVEEIQKA  250 (364)
T ss_pred             HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCH---HHHHHHHHhCCCEEEecCcccccHHHHHHHHhhh
Confidence            3467889999999976 59999999999999998655555443   26788889999887642    24444 5443  2


Q ss_pred             CCCCCeEEEecCCCc-hHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHH
Q psy2961          77 SIPKPKLALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNE  155 (202)
Q Consensus        77 ~~~~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  155 (202)
                      .+.++|++||++|+. .....+++++++|+++.+|.... ...++...+..+++++.+++..            ...++.
T Consensus       251 ~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~------------~~~~~~  317 (364)
T PLN02702        251 MGGGIDVSFDCVGFNKTMSTALEATRAGGKVCLVGMGHN-EMTVPLTPAAAREVDVVGVFRY------------RNTWPL  317 (364)
T ss_pred             cCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEccCCC-CCcccHHHHHhCccEEEEeccC------------hHHHHH
Confidence            345799999999954 45568999999999999985433 2233444566778888886632            134678


Q ss_pred             HHHHHHcCCCCC--Ccceeech--hhHHHHHHHHhhhcCCCCceEEEe
Q psy2961         156 LTEMMRTGKLAA--PAHKFVTL--KNFQEALMNTMSIQGKSGVKYYID  199 (202)
Q Consensus       156 ~~~~~~~g~~~~--~~~~~~~~--~~~~~a~~~~~~~~~~~~gkvv~~  199 (202)
                      ++++++++.+.+  .++++|++  +++++||+.+.  .+...+|+|+.
T Consensus       318 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~a~~~~~--~~~~~~kvv~~  363 (364)
T PLN02702        318 CLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSA--RGGNAIKVMFN  363 (364)
T ss_pred             HHHHHHcCCCCchHheEEEeccChHHHHHHHHHHh--cCCCceEEEEe
Confidence            899999999863  35677555  89999999988  77778899985

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=99.81  E-value=3e-18  Score=132.29  Aligned_cols=166  Identities=24%  Similarity=0.350  Sum_probs=128.1

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhCCCCCeEE
Q psy2961           6 NSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLA   84 (202)
Q Consensus         6 ~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~~~~~d~v   84 (202)
                      +++++|++|+|+|+.|++|++++++|+..|++++++++        .+.++++|+++++++.+... +.+.+  .++|++
T Consensus       158 ~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~~~--------~~~~~~~g~~~~~~~~~~~~~l~~~~--~~~d~v  227 (325)
T cd08264         158 AGLGPGETVVVFGASGNTGIFAVQLAKMMGAEVIAVSR--------KDWLKEFGADEVVDYDEVEEKVKEIT--KMADVV  227 (325)
T ss_pred             cCCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeH--------HHHHHHhCCCeeecchHHHHHHHHHh--CCCCEE
Confidence            67899999999999889999999999999999888762        35667899988888765545 66655  579999


Q ss_pred             EecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHHHcCC
Q psy2961          85 LNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGK  164 (202)
Q Consensus        85 id~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  164 (202)
                      +|++|+......+++|+++|+++.+|........++...++.++.++.+...+.           ++.+.++++++... 
T Consensus       228 l~~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~~~-  295 (325)
T cd08264         228 INSLGSSFWDLSLSVLGRGGRLVTFGTLTGGEVKLDLSDLYSKQISIIGSTGGT-----------RKELLELVKIAKDL-  295 (325)
T ss_pred             EECCCHHHHHHHHHhhccCCEEEEEecCCCCCCccCHHHHhhcCcEEEEccCCC-----------HHHHHHHHHHHHcC-
Confidence            999998766779999999999999986433233455555666677777754331           34577777777543 


Q ss_pred             CCCCcceeechhhHHHHHHHHhhhcCCCCceE
Q psy2961         165 LAAPAHKFVTLKNFQEALMNTMSIQGKSGVKY  196 (202)
Q Consensus       165 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkv  196 (202)
                       +..+.++|+++++++||+.+.  .+...+|+
T Consensus       296 -~~~~~~~~~~~~~~~a~~~~~--~~~~~~kv  324 (325)
T cd08264         296 -KVKVWKTFKLEEAKEALKELF--SKERDGRI  324 (325)
T ss_pred             -CceeEEEEcHHHHHHHHHHHH--cCCCcccc
Confidence             345678999999999999988  66666665

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=99.81  E-value=5.2e-18  Score=131.82  Aligned_cols=175  Identities=19%  Similarity=0.233  Sum_probs=131.4

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCc-EEEEecCcccHHHHHHHHHhcCCceEeCh--hHHHh-HHHhhCCCCCe
Q psy2961           7 SLSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLGADYVFTE--EELRN-ISRDASIPKPK   82 (202)
Q Consensus         7 ~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg~~~v~~~--~~~~~-~~~~~~~~~~d   82 (202)
                      .+++|++|+|.|+ +++|++++|+|+.+|++ ++++.+++    ++.+.++++|++.++++  .++.+ +.+.+++.++|
T Consensus       158 ~~~~g~~vlI~~~-g~vg~~a~~la~~~G~~~v~~~~~~~----~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~~~~~d  232 (340)
T TIGR00692       158 GPISGKSVLVTGA-GPIGLMAIAVAKASGAYPVIVSDPNE----YRLELAKKMGATYVVNPFKEDVVKEVADLTDGEGVD  232 (340)
T ss_pred             cCCCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCH----HHHHHHHHhCCcEEEcccccCHHHHHHHhcCCCCCC
Confidence            4678999999775 59999999999999997 66663333    26778889999888865  34555 76766667899


Q ss_pred             EEEecCCCch-HHHHHHhcccCcEEEEEeccCCCCcCCCcc-cccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHH
Q psy2961          83 LALNCVGGNS-ATNLLRTLVSKGVMVTYGGMSREPVQIPTS-AFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMM  160 (202)
Q Consensus        83 ~vid~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (202)
                      +++||+|+.. ....+++|+++|+++.+|.... ...++.. .++.+++++.++...          ...+.+.++.+++
T Consensus       233 ~vld~~g~~~~~~~~~~~l~~~g~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~l  301 (340)
T TIGR00692       233 VFLEMSGAPKALEQGLQAVTPGGRVSLLGLPPG-KVTIDFTNKVIFKGLTIYGITGR----------HMFETWYTVSRLI  301 (340)
T ss_pred             EEEECCCCHHHHHHHHHhhcCCCEEEEEccCCC-CcccchhhhhhhcceEEEEEecC----------CchhhHHHHHHHH
Confidence            9999988654 4558999999999999985432 2222232 455567777665411          1134578899999


Q ss_pred             HcCCCC--CCcceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         161 RTGKLA--APAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       161 ~~g~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      .++++.  +.+.+.+++++++++++.+.  +++. ||+|++|
T Consensus       302 ~~~~l~~~~~~~~~~~l~~~~~a~~~~~--~~~~-gkvvv~~  340 (340)
T TIGR00692       302 QSGKLDLDPIITHKFKFDKFEKGFELMR--SGQT-GKVILSL  340 (340)
T ss_pred             HcCCCChHHheeeeeeHHHHHHHHHHHh--cCCC-ceEEEeC
Confidence            999997  34678999999999999998  7764 9999875

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=99.80  E-value=9.3e-18  Score=130.31  Aligned_cols=174  Identities=21%  Similarity=0.315  Sum_probs=129.0

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhh-CCCCCe
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDA-SIPKPK   82 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~-~~~~~d   82 (202)
                      ...+ +|++|||.|+ +++|++++|+|+.+|+ +++++.++++    +.+.++++|.+.++++.+.. +.+.. ...++|
T Consensus       161 ~~~~-~~~~VLI~g~-g~vG~~~~~lak~~G~~~v~~~~~s~~----~~~~~~~~g~~~vi~~~~~~-~~~~~~~~~~vd  233 (339)
T cd08232         161 AGDL-AGKRVLVTGA-GPIGALVVAAARRAGAAEIVATDLADA----PLAVARAMGADETVNLARDP-LAAYAADKGDFD  233 (339)
T ss_pred             cCCC-CCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCHH----HHHHHHHcCCCEEEcCCchh-hhhhhccCCCcc
Confidence            3445 8999999886 5999999999999999 6777665554    56778889998888754311 21222 224699


Q ss_pred             EEEecCCCc-hHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHHH
Q psy2961          83 LALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMR  161 (202)
Q Consensus        83 ~vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (202)
                      +++|++|+. .....+++|+++|+++.+|... .....+...++.+++++.+....            .+.++++++++.
T Consensus       234 ~vld~~g~~~~~~~~~~~L~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~  300 (339)
T cd08232         234 VVFEASGAPAALASALRVVRPGGTVVQVGMLG-GPVPLPLNALVAKELDLRGSFRF------------DDEFAEAVRLLA  300 (339)
T ss_pred             EEEECCCCHHHHHHHHHHHhcCCEEEEEecCC-CCccCcHHHHhhcceEEEEEecC------------HHHHHHHHHHHH
Confidence            999999864 4556899999999999998544 22233333345677777776521            235778889999


Q ss_pred             cCCCCCC--cceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         162 TGKLAAP--AHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       162 ~g~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      +|.+++.  +.++|+++++++|++.+.  .+...+|+|+++
T Consensus       301 ~~~i~~~~~~~~~~~~~~~~~a~~~~~--~~~~~gkvvv~~  339 (339)
T cd08232         301 AGRIDVRPLITAVFPLEEAAEAFALAA--DRTRSVKVQLSF  339 (339)
T ss_pred             cCCCCchhheeEEecHHHHHHHHHHHH--hCCCceeEEEeC
Confidence            9998753  568899999999999998  777789999874

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=99.80  E-value=1e-17  Score=131.70  Aligned_cols=180  Identities=17%  Similarity=0.255  Sum_probs=129.6

Q ss_pred             ccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcccHHHHHHHHHhcCCceEeChh----HHHh-HHHhh
Q psy2961           3 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTEE----ELRN-ISRDA   76 (202)
Q Consensus         3 ~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~----~~~~-~~~~~   76 (202)
                      .+.+++++|++|+|+|+ |++|++++++|+..|+ +|+++.++++    +++.++++|++.++++.    +... +.+.+
T Consensus       183 ~~~~~~~~g~~VlV~G~-g~vG~~~~~~a~~~G~~~Vi~~~~~~~----~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~  257 (373)
T cd08299         183 VNTAKVTPGSTCAVFGL-GGVGLSAIMGCKAAGASRIIAVDINKD----KFAKAKELGATECINPQDYKKPIQEVLTEMT  257 (373)
T ss_pred             HhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHH----HHHHHHHcCCceEecccccchhHHHHHHHHh
Confidence            34577899999999976 5999999999999999 6877776654    68888999999888753    2445 66666


Q ss_pred             CCCCCeEEEecCCCchH-HHHHHh-cccCcEEEEEeccCCC-CcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHH
Q psy2961          77 SIPKPKLALNCVGGNSA-TNLLRT-LVSKGVMVTYGGMSRE-PVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMM  153 (202)
Q Consensus        77 ~~~~~d~vid~~g~~~~-~~~~~~-l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  153 (202)
                      . .++|+++||+|++.. ...+.. ++++|+++.+|..... ...++.. .+.++.++.+++...+..        .+.+
T Consensus       258 ~-~~~d~vld~~g~~~~~~~~~~~~~~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~--------~~~~  327 (373)
T cd08299         258 D-GGVDFSFEVIGRLDTMKAALASCHEGYGVSVIVGVPPSSQNLSINPM-LLLTGRTWKGAVFGGWKS--------KDSV  327 (373)
T ss_pred             C-CCCeEEEECCCCcHHHHHHHHhhccCCCEEEEEccCCCCceeecCHH-HHhcCCeEEEEEecCCcc--------HHHH
Confidence            5 579999999997554 444554 4679999999965432 2222222 234677888877654332        2335


Q ss_pred             HHHHHHHHcCCCCC--CcceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         154 NELTEMMRTGKLAA--PAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       154 ~~~~~~~~~g~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      .++++.+.++.+.+  .++++|+++++++||+.+.  +++. .|+++.+
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~l~e~~~a~~~~~--~~~~-~k~~~~~  373 (373)
T cd08299         328 PKLVADYMAKKFNLDPLITHTLPFEKINEGFDLLR--SGKS-IRTVLTF  373 (373)
T ss_pred             HHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHh--CCCc-ceEEEeC
Confidence            56666676665543  4678999999999999988  6554 5888764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=99.79  E-value=7.3e-18  Score=132.65  Aligned_cols=176  Identities=18%  Similarity=0.167  Sum_probs=129.5

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcccHHHHHHHHHhcCCceEeCh--hHHHh-HHHhhCCC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTE--EELRN-ISRDASIP   79 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~--~~~~~-~~~~~~~~   79 (202)
                      ..+++++|++|+|.|++ ++|++++|+|+..|+ +++++.++++    +.+.++++|+. .+++  .++.+ +.+.+. .
T Consensus       170 ~~~~~~~g~~vlI~g~g-~vg~~~~~~a~~~G~~~vi~~~~~~~----~~~~~~~~g~~-~v~~~~~~~~~~i~~~~~-~  242 (375)
T cd08282         170 ELAGVQPGDTVAVFGAG-PVGLMAAYSAILRGASRVYVVDHVPE----RLDLAESIGAI-PIDFSDGDPVEQILGLEP-G  242 (375)
T ss_pred             HhcCCCCCCEEEEECCC-HHHHHHHHHHHHcCCCEEEEECCCHH----HHHHHHHcCCe-EeccCcccHHHHHHHhhC-C
Confidence            45678899999998764 999999999999998 5777544443    67888999985 4554  24455 666665 5


Q ss_pred             CCeEEEecCCCch------------HHHHHHhcccCcEEEEEeccCCCCc------------CCCcccccccCeeEEEEe
Q psy2961          80 KPKLALNCVGGNS------------ATNLLRTLVSKGVMVTYGGMSREPV------------QIPTSAFIFKDITLRGHW  135 (202)
Q Consensus        80 ~~d~vid~~g~~~------------~~~~~~~l~~~G~~v~~g~~~~~~~------------~~~~~~~~~~~~~~~g~~  135 (202)
                      ++|+++||+|++.            +...+++++++|+++.+|.......            .++...++.++..+.+..
T Consensus       243 ~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (375)
T cd08282         243 GVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIVGVYVAEDPGAGDAAAKQGELSFDFGLLWAKGLSFGTGQ  322 (375)
T ss_pred             CCCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEEEeccCCcccccccccccCccccccHHHHHhcCcEEEEec
Confidence            7999999999874            4568999999999998875432211            122233444455544432


Q ss_pred             chhHhhhcccHHHHHHHHHHHHHHHHcCCCCCC--cceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         136 MTRWQKENKESAERKSMMNELTEMMRTGKLAAP--AHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      .           ...+.+..+++++.++++.+.  +.++++++++++||+.+.  ++. .+|+|+++
T Consensus       323 ~-----------~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~a~~~~~--~~~-~~kvvv~~  375 (375)
T cd08282         323 A-----------PVKKYNRQLRDLILAGRAKPSFVVSHVISLEDAPEAYARFD--KRL-ETKVVIKP  375 (375)
T ss_pred             C-----------CchhhHHHHHHHHHcCCCChHHcEEEEeeHHHHHHHHHHHh--cCC-ceEEEeCC
Confidence            1           124568888999999999874  789999999999999998  777 88999863

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=99.79  E-value=8.7e-18  Score=130.67  Aligned_cols=181  Identities=17%  Similarity=0.197  Sum_probs=135.7

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCc-EEEEecCcccHHHHHHHHHhcCCceEeChhH-HHh-HHHhhCCCCC
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLGADYVFTEEE-LRN-ISRDASIPKP   81 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~-~~~-~~~~~~~~~~   81 (202)
                      ..++++|++|+|+|+ +.+|++++|+|+.+|++ +++++++++    +.+.++++|++.++++.+ ... +.....+.++
T Consensus       154 ~~~~~~~~~vlI~g~-g~~g~~~~~lA~~~G~~~v~~~~~~~~----~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  228 (343)
T cd08236         154 LAGITLGDTVVVIGA-GTIGLLAIQWLKILGAKRVIAVDIDDE----KLAVARELGADDTINPKEEDVEKVRELTEGRGA  228 (343)
T ss_pred             hcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHH----HHHHHHHcCCCEEecCccccHHHHHHHhCCCCC
Confidence            566889999999975 69999999999999998 777776654    577888899988887532 144 6667766789


Q ss_pred             eEEEecCCCch-HHHHHHhcccCcEEEEEeccCCCC--cCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHH
Q psy2961          82 KLALNCVGGNS-ATNLLRTLVSKGVMVTYGGMSREP--VQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTE  158 (202)
Q Consensus        82 d~vid~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  158 (202)
                      |+++||+|+.. ....+++|+++|+++.+|......  ...+...++.++.++.++.......      ...+.++++.+
T Consensus       229 d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~  302 (343)
T cd08236         229 DLVIEAAGSPATIEQALALARPGGKVVLVGIPYGDVTLSEEAFEKILRKELTIQGSWNSYSAP------FPGDEWRTALD  302 (343)
T ss_pred             CEEEECCCCHHHHHHHHHHhhcCCEEEEEcccCCCcccccCCHHHHHhcCcEEEEEeeccccc------cchhhHHHHHH
Confidence            99999998654 456899999999999998554321  1112233457788888876532111      12456788899


Q ss_pred             HHHcCCCC--CCcceeechhhHHHHHHHHhhhc-CCCCceEEE
Q psy2961         159 MMRTGKLA--APAHKFVTLKNFQEALMNTMSIQ-GKSGVKYYI  198 (202)
Q Consensus       159 ~~~~g~~~--~~~~~~~~~~~~~~a~~~~~~~~-~~~~gkvv~  198 (202)
                      ++.++.+.  +.+..++++++++++++.+.  + ....+|+|+
T Consensus       303 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~k~v~  343 (343)
T cd08236         303 LLASGKIKVEPLITHRLPLEDGPAAFERLA--DREEFSGKVLL  343 (343)
T ss_pred             HHHcCCCChHHheeeeecHHHHHHHHHHHH--cCCCCeeEEeC
Confidence            99999986  34568899999999999998  7 666788875

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=99.79  E-value=1.3e-17  Score=129.10  Aligned_cols=175  Identities=17%  Similarity=0.243  Sum_probs=130.0

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCc-EEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhCCCCC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKP   81 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~~~~~   81 (202)
                      +.+++++|++|+|+|+ +.+|.+++++|+..|++ ++++.++++    +.+.++++|.+.++++.+... ....+.+.++
T Consensus       153 ~~~~~~~g~~vlI~g~-g~vg~~~~~la~~~G~~~v~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v  227 (334)
T cd08234         153 DLLGIKPGDSVLVFGA-GPIGLLLAQLLKLNGASRVTVAEPNEE----KLELAKKLGATETVDPSREDPEAQKEDNPYGF  227 (334)
T ss_pred             HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCHH----HHHHHHHhCCeEEecCCCCCHHHHHHhcCCCC
Confidence            4577899999999975 59999999999999998 566665554    577888899887776532211 1133445679


Q ss_pred             eEEEecCCCch-HHHHHHhcccCcEEEEEeccCC-CCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHH
Q psy2961          82 KLALNCVGGNS-ATNLLRTLVSKGVMVTYGGMSR-EPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEM  159 (202)
Q Consensus        82 d~vid~~g~~~-~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (202)
                      |+++||+|... ....+++++++|+++.+|.... ....+....++.+++++.+....            ...++++.++
T Consensus       228 d~v~~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~  295 (334)
T cd08234         228 DVVIEATGVPKTLEQAIEYARRGGTVLVFGVYAPDARVSISPFEIFQKELTIIGSFIN------------PYTFPRAIAL  295 (334)
T ss_pred             cEEEECCCChHHHHHHHHHHhcCCEEEEEecCCCCCCcccCHHHHHhCCcEEEEeccC------------HHHHHHHHHH
Confidence            99999998654 4558999999999999986543 12233333334467777776532            3347888899


Q ss_pred             HHcCCCCCC--cceeechhhHHHHHHHHhhhcCCCCceEEE
Q psy2961         160 MRTGKLAAP--AHKFVTLKNFQEALMNTMSIQGKSGVKYYI  198 (202)
Q Consensus       160 ~~~g~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~  198 (202)
                      +.++++.+.  +..+++++++++|++.+.  . ...+|+|+
T Consensus       296 ~~~~~l~~~~~~~~~~~~~~~~~a~~~~~--~-~~~~k~vi  333 (334)
T cd08234         296 LESGKIDVKGLVSHRLPLEEVPEALEGMR--S-GGALKVVV  333 (334)
T ss_pred             HHcCCCChhhhEEEEecHHHHHHHHHHHh--c-CCceEEEe
Confidence            999998753  568899999999999999  7 67889886

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.79  E-value=3.3e-17  Score=126.19  Aligned_cols=187  Identities=21%  Similarity=0.293  Sum_probs=138.5

Q ss_pred             ccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChh--HHHh-HHHhhCCC
Q psy2961           3 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRDASIP   79 (202)
Q Consensus         3 ~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~--~~~~-~~~~~~~~   79 (202)
                      .+.+++.+|++|+|+|+++++|++++++++..|++++.++ +++    +.+.+.++|++.+++..  ++.. +.+.+.+.
T Consensus       134 ~~~~~~~~g~~vlI~g~~~~ig~~~~~~a~~~g~~v~~~~-~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  208 (325)
T cd08271         134 FKKLRIEAGRTILITGGAGGVGSFAVQLAKRAGLRVITTC-SKR----NFEYVKSLGADHVIDYNDEDVCERIKEITGGR  208 (325)
T ss_pred             HHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEE-cHH----HHHHHHHcCCcEEecCCCccHHHHHHHHcCCC
Confidence            3457788999999999988999999999999999988876 433    56777889998888643  3445 66666667


Q ss_pred             CCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcc--cHHHHHHHHHHHH
Q psy2961          80 KPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENK--ESAERKSMMNELT  157 (202)
Q Consensus        80 ~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~  157 (202)
                      ++|++++++++......+++++++|+++.++......   . ...+..++.+....+.......+  .+....+.+.++.
T Consensus       209 ~~d~vi~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (325)
T cd08271         209 GVDAVLDTVGGETAAALAPTLAFNGHLVCIQGRPDAS---P-DPPFTRALSVHEVALGAAHDHGDPAAWQDLRYAGEELL  284 (325)
T ss_pred             CCcEEEECCCcHhHHHHHHhhccCCEEEEEcCCCCCc---c-hhHHhhcceEEEEEecccccccchhhHHHHHHHHHHHH
Confidence            8999999999887777899999999999987443221   1 11223344444333222111111  1134567788899


Q ss_pred             HHHHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         158 EMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       158 ~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      +++.++.+.+...+.++++++.++++.+.  .+...+|+++++
T Consensus       285 ~~~~~~~i~~~~~~~~~~~~~~~a~~~~~--~~~~~~kiv~~~  325 (325)
T cd08271         285 ELLAAGKLEPLVIEVLPFEQLPEALRALK--DRHTRGKIVVTI  325 (325)
T ss_pred             HHHHCCCeeeccceEEcHHHHHHHHHHHH--cCCccceEEEEC
Confidence            99999999877778999999999999998  777788998863

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.78  E-value=3.8e-17  Score=126.34  Aligned_cols=184  Identities=20%  Similarity=0.213  Sum_probs=131.6

Q ss_pred             ccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCe
Q psy2961           3 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPK   82 (202)
Q Consensus         3 ~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d   82 (202)
                      .+.+++.+|++|+|+|+++++|++++++|+..|++++.+++ ++    +.+.++++|+..+ ++...........++++|
T Consensus       132 ~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~v~~~~~-~~----~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~d  205 (331)
T cd08273         132 HRAAKVLTGQRVLIHGASGGVGQALLELALLAGAEVYGTAS-ER----NHAALRELGATPI-DYRTKDWLPAMLTPGGVD  205 (331)
T ss_pred             HHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeC-HH----HHHHHHHcCCeEE-cCCCcchhhhhccCCCce
Confidence            34567899999999999889999999999999999988886 43    5778888987543 322111111122235799


Q ss_pred             EEEecCCCchHHHHHHhcccCcEEEEEeccCCCCc-CCCc--------------ccccccCeeEEEEechhHhhhcccHH
Q psy2961          83 LALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPV-QIPT--------------SAFIFKDITLRGHWMTRWQKENKESA  147 (202)
Q Consensus        83 ~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~-~~~~--------------~~~~~~~~~~~g~~~~~~~~~~~~~~  147 (202)
                      +++||+|+......+++++++|+++.+|....... ....              .....+..++.....  +..  ..+.
T Consensus       206 ~vl~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~p~  281 (331)
T cd08273         206 VVFDGVGGESYEESYAALAPGGTLVCYGGNSSLLQGRRSLAALGSLLARLAKLKLLPTGRRATFYYVWR--DRA--EDPK  281 (331)
T ss_pred             EEEECCchHHHHHHHHHhcCCCEEEEEccCCCCCCccccccchhhhhhhhhhhcceeccceeEEEeech--hcc--cCHH
Confidence            99999999887778999999999999985543221 1111              011222333333332  211  1224


Q ss_pred             HHHHHHHHHHHHHHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEE
Q psy2961         148 ERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYI  198 (202)
Q Consensus       148 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~  198 (202)
                      ...+.+.++++++.+|.+.+.+.+++++++++++|+.+.  ++...+|+|+
T Consensus       282 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~--~~~~~gkvv~  330 (331)
T cd08273         282 LFRQDLTELLDLLAKGKIRPKIAKRLPLSEVAEAHRLLE--SGKVVGKIVL  330 (331)
T ss_pred             HHHHHHHHHHHHHHCCCccCCcceEEcHHHHHHHHHHHH--cCCCcceEEe
Confidence            556789999999999999887788999999999999998  7777888885

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=99.78  E-value=1.2e-17  Score=126.11  Aligned_cols=181  Identities=18%  Similarity=0.224  Sum_probs=129.1

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCc-EEEEecCcccHHHHHHHHHhcC-CceEeChhHHHhHHHhhCCCCCe
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLG-ADYVFTEEELRNISRDASIPKPK   82 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg-~~~v~~~~~~~~~~~~~~~~~~d   82 (202)
                      .+++++|++|+|+|+ |++|++++++|+..|++ +++++++++    +.+.++++| ++.++...+     ..+.+.++|
T Consensus        92 ~~~~~~g~~vlI~g~-g~vg~~~i~~a~~~g~~~vi~~~~~~~----~~~~~~~~g~~~~~~~~~~-----~~~~~~~~d  161 (277)
T cd08255          92 DAEPRLGERVAVVGL-GLVGLLAAQLAKAAGAREVVGVDPDAA----RRELAEALGPADPVAADTA-----DEIGGRGAD  161 (277)
T ss_pred             hcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCcEEEECCCHH----HHHHHHHcCCCccccccch-----hhhcCCCCC
Confidence            567899999999986 59999999999999998 888776665    577888888 455443321     112346799


Q ss_pred             EEEecCCCch-HHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccH-HHHHHHHHHHHHHH
Q psy2961          83 LALNCVGGNS-ATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKES-AERKSMMNELTEMM  160 (202)
Q Consensus        83 ~vid~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~  160 (202)
                      ++||+++... ....+++++++|+++.+|..... .......+..+.+++.+.....+....+.+ ....+.++++.+++
T Consensus       162 ~vl~~~~~~~~~~~~~~~l~~~g~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  240 (277)
T cd08255         162 VVIEASGSPSALETALRLLRDRGRVVLVGWYGLK-PLLLGEEFHFKRLPIRSSQVYGIGRYDRPRRWTEARNLEEALDLL  240 (277)
T ss_pred             EEEEccCChHHHHHHHHHhcCCcEEEEEeccCCC-ccccHHHHHhccCeEEeecccccccccccccccccccHHHHHHHH
Confidence            9999988644 45689999999999999865433 111112233456677776654332211100 11235689999999


Q ss_pred             HcCCCCCCcceeechhhHHHHHHHHhhhcC-CCCceEEE
Q psy2961         161 RTGKLAAPAHKFVTLKNFQEALMNTMSIQG-KSGVKYYI  198 (202)
Q Consensus       161 ~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~gkvv~  198 (202)
                      .++.+.+.+.+.++++++++||+.+.  .+ ....|+++
T Consensus       241 ~~~~l~~~~~~~~~~~~~~~a~~~~~--~~~~~~~k~~~  277 (277)
T cd08255         241 AEGRLEALITHRVPFEDAPEAYRLLF--EDPPECLKVVL  277 (277)
T ss_pred             HcCCccccccCccCHHHHHHHHHHHH--cCCccceeeeC
Confidence            99999887788999999999999998  44 55678764

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>cd05281 TDH Threonine dehydrogenase

Probab=99.78  E-value=2.5e-17  Score=128.00  Aligned_cols=174  Identities=21%  Similarity=0.257  Sum_probs=129.0

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcccHHHHHHHHHhcCCceEeChh--HHHhHHHhhCCCCCeE
Q psy2961           7 SLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRNISRDASIPKPKL   83 (202)
Q Consensus         7 ~~~~g~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~--~~~~~~~~~~~~~~d~   83 (202)
                      ..++|++|+|.|+ +++|++++|+|+..|+ +++++.++++    +.+.++++|+++++++.  ++..+.+.+.+.++|+
T Consensus       160 ~~~~g~~vlV~g~-g~vg~~~~~la~~~G~~~v~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vd~  234 (341)
T cd05281         160 GDVSGKSVLITGC-GPIGLMAIAVAKAAGASLVIASDPNPY----RLELAKKMGADVVINPREEDVVEVKSVTDGTGVDV  234 (341)
T ss_pred             cCCCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCHH----HHHHHHHhCcceeeCcccccHHHHHHHcCCCCCCE
Confidence            3478999999876 5999999999999999 5777644443    67888899998888642  2213555566678999


Q ss_pred             EEecCCCch-HHHHHHhcccCcEEEEEeccCCCCcCCCc-ccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHHH
Q psy2961          84 ALNCVGGNS-ATNLLRTLVSKGVMVTYGGMSREPVQIPT-SAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMR  161 (202)
Q Consensus        84 vid~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (202)
                      +|||+|+.. ....+++|+++|+++.+|.... ....+. ..+..+++.+.++...          ...+.+.++.+++.
T Consensus       235 vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~l~  303 (341)
T cd05281         235 VLEMSGNPKAIEQGLKALTPGGRVSILGLPPG-PVDIDLNNLVIFKGLTVQGITGR----------KMFETWYQVSALLK  303 (341)
T ss_pred             EEECCCCHHHHHHHHHHhccCCEEEEEccCCC-CcccccchhhhccceEEEEEecC----------CcchhHHHHHHHHH
Confidence            999998754 4568999999999999985433 222222 2255567777765521          11345778889999


Q ss_pred             cCCCCC--CcceeechhhHHHHHHHHhhhcCCCCceEEEe
Q psy2961         162 TGKLAA--PAHKFVTLKNFQEALMNTMSIQGKSGVKYYID  199 (202)
Q Consensus       162 ~g~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~  199 (202)
                      +|.+.+  .+...++++++++||+.+.  .++ .+|+|++
T Consensus       304 ~~~l~~~~~~~~~~~~~~~~~a~~~~~--~~~-~gk~vv~  340 (341)
T cd05281         304 SGKVDLSPVITHKLPLEDFEEAFELMR--SGK-CGKVVLY  340 (341)
T ss_pred             cCCCChhHheEEEecHHHHHHHHHHHh--cCC-CceEEec
Confidence            999874  3567899999999999998  778 8999986

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.76  E-value=1.5e-16  Score=123.07  Aligned_cols=188  Identities=16%  Similarity=0.240  Sum_probs=138.1

Q ss_pred             ccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChh--HHHh-HHHhhCCC
Q psy2961           3 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRDASIP   79 (202)
Q Consensus         3 ~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~--~~~~-~~~~~~~~   79 (202)
                      .+.+++++|++|+|+|+++++|++++++|+.. . ++.++...+  +++.+.++.+|.+.++++.  ++.. +...+. .
T Consensus       131 ~~~~~~~~~~~vli~g~~g~~g~~~~~~a~~~-~-~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~  205 (337)
T cd08275         131 FELGNLRPGQSVLVHSAAGGVGLAAGQLCKTV-P-NVTVVGTAS--ASKHEALKENGVTHVIDYRTQDYVEEVKKISP-E  205 (337)
T ss_pred             HHhhCCCCCCEEEEEcCcchHHHHHHHHHHHc-c-CcEEEEeCC--HHHHHHHHHcCCcEEeeCCCCcHHHHHHHHhC-C
Confidence            44677899999999999889999999999998 2 233332221  1256778889988877643  4555 666654 6


Q ss_pred             CCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCc----------------CCCcccccccCeeEEEEechhHhhhc
Q psy2961          80 KPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPV----------------QIPTSAFIFKDITLRGHWMTRWQKEN  143 (202)
Q Consensus        80 ~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~----------------~~~~~~~~~~~~~~~g~~~~~~~~~~  143 (202)
                      ++|+++||+|+......+++++++|+++.+|.......                .+.....+.+++++.++.........
T Consensus       206 ~~d~v~~~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (337)
T cd08275         206 GVDIVLDALGGEDTRKSYDLLKPMGRLVVYGAANLVTGEKRSWFKLAKKWWNRPKVDPMKLISENKSVLGFNLGWLFEER  285 (337)
T ss_pred             CceEEEECCcHHHHHHHHHhhccCcEEEEEeecCCcCcccccccccccccccccccCHHHHhhcCceEEEeechhhhhCh
Confidence            79999999998877778999999999999985442111                11113446778888888754322211


Q ss_pred             ccHHHHHHHHHHHHHHHHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         144 KESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                         ......+.++.+++.++.+.+.....|++++++++++.+.  .+...+|+++++
T Consensus       286 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~kvv~~~  337 (337)
T cd08275         286 ---ELLTEVMDKLLKLYEEGKIKPKIDSVFPFEEVGEAMRRLQ--SRKNIGKVVLTP  337 (337)
T ss_pred             ---HHHHHHHHHHHHHHHCCCCCCceeeEEcHHHHHHHHHHHH--cCCCcceEEEeC
Confidence               2234568889999999999887778999999999999998  777788999863

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

Probab=99.76  E-value=3.2e-17  Score=127.93  Aligned_cols=185  Identities=20%  Similarity=0.298  Sum_probs=125.0

Q ss_pred             ccc-CCCCCCEEEEeCCCcHHHHHHHHHHHHCC-C-cEEEEecCcccHHHHHHHHHhcCCceEeChh--H---H-Hh-HH
Q psy2961           4 DYN-SLSPGDVVIQNGANSACGQNVIQIARHWG-L-KTINIVRNRDDIDKLKSYLKSLGADYVFTEE--E---L-RN-IS   73 (202)
Q Consensus         4 ~~~-~~~~g~~VlI~g~~~~vG~~~i~la~~~g-~-~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~--~---~-~~-~~   73 (202)
                      +.+ ++++|++|+|+|+++++|++++|+|+..| . .++++. +++    +.+.++++|++.++++.  +   + .. +.
T Consensus       144 ~~~~~~~~g~~vlI~ga~~~vg~~~~~~a~~~~~~~~v~~~~-~~~----~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~  218 (352)
T cd08247         144 DLGQKLGPDSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGTC-SSR----SAELNKKLGADHFIDYDAHSGVKLLKPVLE  218 (352)
T ss_pred             HhhhccCCCCeEEEECCCchHHHHHHHHHHhcCCcceEEEEe-Chh----HHHHHHHhCCCEEEecCCCcccchHHHHHH
Confidence            344 68899999999999999999999999874 4 455554 443    34577889998888743  2   3 33 33


Q ss_pred             HhhCCCCCeEEEecCCCc-hHHHHHHhcc---cCcEEEEEeccCCCCcCC-C--------c-ccccccCeeEEEEechhH
Q psy2961          74 RDASIPKPKLALNCVGGN-SATNLLRTLV---SKGVMVTYGGMSREPVQI-P--------T-SAFIFKDITLRGHWMTRW  139 (202)
Q Consensus        74 ~~~~~~~~d~vid~~g~~-~~~~~~~~l~---~~G~~v~~g~~~~~~~~~-~--------~-~~~~~~~~~~~g~~~~~~  139 (202)
                      ..+.+.++|++|||+|+. .....+++++   ++|+++.++......... .        . ...+.++.++........
T Consensus       219 ~~~~~~~~d~vl~~~g~~~~~~~~~~~l~~~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (352)
T cd08247         219 NVKGQGKFDLILDCVGGYDLFPHINSILKPKSKNGHYVTIVGDYKANYKKDTFNSWDNPSANARKLFGSLGLWSYNYQFF  298 (352)
T ss_pred             hhcCCCCceEEEECCCCHHHHHHHHHHhCccCCCCEEEEEeCCCcccccchhhhhccccchhhhhhhhhhcCCCcceEEE
Confidence            334357899999999984 4456889999   999999875332211100 0        0 001112222221111100


Q ss_pred             hhhcccHHHHHHHHHHHHHHHHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         140 QKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      . ..+  .  .+.+..+.+++.++.+.+.+.++++++++++||+.+.  +++..+|+++++
T Consensus       299 ~-~~~--~--~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~a~~~~~--~~~~~gkvvi~~  352 (352)
T cd08247         299 L-LDP--N--ADWIEKCAELIADGKVKPPIDSVYPFEDYKEAFERLK--SNRAKGKVVIKV  352 (352)
T ss_pred             E-ecC--C--HHHHHHHHHHHhCCCeEeeeccEecHHHHHHHHHHHH--cCCCCCcEEEeC
Confidence            0 011  1  2567888899999999887788999999999999998  888889999864

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=99.76  E-value=2e-17  Score=128.90  Aligned_cols=180  Identities=22%  Similarity=0.282  Sum_probs=123.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChh--HHHhHHHhhCCCCCeEEEec
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRNISRDASIPKPKLALNC   87 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~--~~~~~~~~~~~~~~d~vid~   87 (202)
                      +|++|+|+|++|++|++++++|+..|+++++++++ +    +.+.++++|.+.+++..  ++..  ......++|++||+
T Consensus       162 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~-~----~~~~~~~~g~~~~~~~~~~~~~~--~l~~~~~vd~vi~~  234 (350)
T cd08248         162 AGKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST-D----AIPLVKSLGADDVIDYNNEDFEE--ELTERGKFDVILDT  234 (350)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc-c----hHHHHHHhCCceEEECCChhHHH--HHHhcCCCCEEEEC
Confidence            49999999998899999999999999998887754 3    46788889988887643  3333  22233679999999


Q ss_pred             CCCchHHHHHHhcccCcEEEEEeccCCCCc---CCCcccccccCeeEEEEechhHhhhcc----cHHHHHHHHHHHHHHH
Q psy2961          88 VGGNSATNLLRTLVSKGVMVTYGGMSREPV---QIPTSAFIFKDITLRGHWMTRWQKENK----ESAERKSMMNELTEMM  160 (202)
Q Consensus        88 ~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~  160 (202)
                      +|++.....+++++++|+++.+|.......   .+.... +....++.............    ......+.+.++++++
T Consensus       235 ~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (350)
T cd08248         235 VGGDTEKWALKLLKKGGTYVTLVSPLLKNTDKLGLVGGM-LKSAVDLLKKNVKSLLKGSHYRWGFFSPSGSALDELAKLV  313 (350)
T ss_pred             CChHHHHHHHHHhccCCEEEEecCCcccccccccccchh-hhhHHHHHHHHHHHHhcCCCeeEEEECCCHHHHHHHHHHH
Confidence            998876779999999999999985432111   010000 01111110000000000000    0011246688999999


Q ss_pred             HcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEe
Q psy2961         161 RTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYID  199 (202)
Q Consensus       161 ~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~  199 (202)
                      .+|.+.+.+++.|+++++++||+.+.  ++...+|++++
T Consensus       314 ~~g~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~~vv~~  350 (350)
T cd08248         314 EDGKIKPVIDKVFPFEEVPEAYEKVE--SGHARGKTVIK  350 (350)
T ss_pred             hCCCEecccceeecHHHHHHHHHHHh--cCCCceEEEeC
Confidence            99999887889999999999999998  77777888863

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=99.76  E-value=9.9e-17  Score=124.08  Aligned_cols=172  Identities=22%  Similarity=0.276  Sum_probs=130.9

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEE
Q psy2961           6 NSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLAL   85 (202)
Q Consensus         6 ~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vi   85 (202)
                      .+++++++|+|+|++ ++|++++++|+..|+++++++++++    +.+.++++|++.++++.+...... .. .++|+++
T Consensus       158 ~~~~~~~~vlI~g~g-~iG~~~~~~a~~~G~~v~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~-~~-~~~d~vi  230 (330)
T cd08245         158 AGPRPGERVAVLGIG-GLGHLAVQYARAMGFETVAITRSPD----KRELARKLGADEVVDSGAELDEQA-AA-GGADVIL  230 (330)
T ss_pred             hCCCCCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHhCCcEEeccCCcchHHh-cc-CCCCEEE
Confidence            578899999999876 6999999999999999999887776    578888899888876432211222 22 4799999


Q ss_pred             ecCCCch-HHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHHHcCC
Q psy2961          86 NCVGGNS-ATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGK  164 (202)
Q Consensus        86 d~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  164 (202)
                      |+++... ....+++++++|+++.++.............++.++.++.++....           ...++.+++++.++.
T Consensus       231 ~~~~~~~~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~ll~~~~  299 (330)
T cd08245         231 VTVVSGAAAEAALGGLRRGGRIVLVGLPESPPFSPDIFPLIMKRQSIAGSTHGG-----------RADLQEALDFAAEGK  299 (330)
T ss_pred             ECCCcHHHHHHHHHhcccCCEEEEECCCCCCccccchHHHHhCCCEEEEeccCC-----------HHHHHHHHHHHHcCC
Confidence            9987644 4558999999999999985433322222334556777777776432           345788889999999


Q ss_pred             CCCCcceeechhhHHHHHHHHhhhcCCCCceEEE
Q psy2961         165 LAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYI  198 (202)
Q Consensus       165 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~  198 (202)
                      +.+ ..+.++++++++||+.+.  ++...+|+|+
T Consensus       300 l~~-~~~~~~~~~~~~a~~~~~--~~~~~~~~v~  330 (330)
T cd08245         300 VKP-MIETFPLDQANEAYERME--KGDVRFRFVL  330 (330)
T ss_pred             Ccc-eEEEEcHHHHHHHHHHHH--cCCCCcceeC
Confidence            886 457899999999999998  8888888875

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.75  E-value=8.2e-17  Score=124.49  Aligned_cols=168  Identities=18%  Similarity=0.183  Sum_probs=125.7

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeE
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKL   83 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~   83 (202)
                      +.+++++|++|+|+|++ ++|++++++++..|+++++++++++    +++.++++|++.+++....       .+.++|+
T Consensus       161 ~~~~~~~~~~vlV~g~g-~vg~~~~~la~~~g~~v~~~~~~~~----~~~~~~~~g~~~~~~~~~~-------~~~~vD~  228 (329)
T cd08298         161 KLAGLKPGQRLGLYGFG-ASAHLALQIARYQGAEVFAFTRSGE----HQELARELGADWAGDSDDL-------PPEPLDA  228 (329)
T ss_pred             HhhCCCCCCEEEEECCc-HHHHHHHHHHHHCCCeEEEEcCChH----HHHHHHHhCCcEEeccCcc-------CCCcccE
Confidence            56788999999999865 9999999999999999998887775    6788888999877764321       2357999


Q ss_pred             EEecCCCc-hHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHHHc
Q psy2961          84 ALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRT  162 (202)
Q Consensus        84 vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (202)
                      ++++++.. .....+++++++|+++.+|........++... +.++..+.+....           ..+.+..+++++++
T Consensus       229 vi~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~i~~~~~~-----------~~~~~~~~~~l~~~  296 (329)
T cd08298         229 AIIFAPVGALVPAALRAVKKGGRVVLAGIHMSDIPAFDYEL-LWGEKTIRSVANL-----------TRQDGEEFLKLAAE  296 (329)
T ss_pred             EEEcCCcHHHHHHHHHHhhcCCEEEEEcCCCCCCCccchhh-hhCceEEEEecCC-----------CHHHHHHHHHHHHc
Confidence            99986544 44558999999999998873221111122222 3345555554421           13457888899999


Q ss_pred             CCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEE
Q psy2961         163 GKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYI  198 (202)
Q Consensus       163 g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~  198 (202)
                      +.+.+. .++|+++++++||+.+.  .+...+|+|+
T Consensus       297 ~~l~~~-~~~~~~~~~~~a~~~~~--~~~~~~~~v~  329 (329)
T cd08298         297 IPIKPE-VETYPLEEANEALQDLK--EGRIRGAAVL  329 (329)
T ss_pred             CCCCce-EEEEeHHHHHHHHHHHH--cCCCcceeeC
Confidence            998874 68999999999999999  8888888874

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=99.74  E-value=1.1e-16  Score=122.17  Aligned_cols=172  Identities=23%  Similarity=0.295  Sum_probs=130.0

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeE
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKL   83 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~   83 (202)
                      +...+.+|++|+|+|+++++|++++++++..|++++++++++     +.+.++++|.+.+++..+..... ...+.++|+
T Consensus       138 ~~~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~d~  211 (309)
T cd05289         138 ELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA-----NADFLRSLGADEVIDYTKGDFER-AAAPGGVDA  211 (309)
T ss_pred             hhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch-----hHHHHHHcCCCEEEeCCCCchhh-ccCCCCceE
Confidence            345688999999999988999999999999999998887654     35677888887777543211111 334467999


Q ss_pred             EEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHHHcC
Q psy2961          84 ALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTG  163 (202)
Q Consensus        84 vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  163 (202)
                      ++|++++......+++++++|+++.+|...... .    ..+.++.++.......        .  .+.+.++.++++++
T Consensus       212 v~~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~-~----~~~~~~~~~~~~~~~~--------~--~~~~~~~~~~~~~~  276 (309)
T cd05289         212 VLDTVGGETLARSLALVKPGGRLVSIAGPPPAE-Q----AAKRRGVRAGFVFVEP--------D--GEQLAELAELVEAG  276 (309)
T ss_pred             EEECCchHHHHHHHHHHhcCcEEEEEcCCCcch-h----hhhhccceEEEEEecc--------c--HHHHHHHHHHHHCC
Confidence            999999987777999999999999998543311 1    2334566666554321        1  45688899999999


Q ss_pred             CCCCCcceeechhhHHHHHHHHhhhcCCCCceEEE
Q psy2961         164 KLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYI  198 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~  198 (202)
                      .+.+.+++.|++++++++|+.+.  .+...+|+++
T Consensus       277 ~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~kvv~  309 (309)
T cd05289         277 KLRPVVDRVFPLEDAAEAHERLE--SGHARGKVVL  309 (309)
T ss_pred             CEEEeeccEEcHHHHHHHHHHHH--hCCCCCcEeC
Confidence            98877788999999999999998  6666778774

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.72  E-value=4.7e-16  Score=119.49  Aligned_cols=178  Identities=22%  Similarity=0.256  Sum_probs=123.5

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeE
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKL   83 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~   83 (202)
                      +..++++|++|+|+|++|++|++++++|+..|+++++++++ +    +.+.++++|.+.+++..........+.+.++|+
T Consensus       137 ~~~~~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~-~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~  211 (319)
T cd08267         137 DAGKVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST-R----NAELVRSLGADEVIDYTTEDFVALTAGGEKYDV  211 (319)
T ss_pred             HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH-H----HHHHHHHcCCCEeecCCCCCcchhccCCCCCcE
Confidence            44568899999999998899999999999999999888754 3    578888999888776432100122344567999


Q ss_pred             EEecCCCchH--HHHHHhcccCcEEEEEeccCCCCcCCC---cccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHH
Q psy2961          84 ALNCVGGNSA--TNLLRTLVSKGVMVTYGGMSREPVQIP---TSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTE  158 (202)
Q Consensus        84 vid~~g~~~~--~~~~~~l~~~G~~v~~g~~~~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  158 (202)
                      ++||+|+...  ...+..++++|+++.+|..........   ..........+......         .. .+.+.++.+
T Consensus       212 vi~~~~~~~~~~~~~~~~l~~~g~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~-~~~~~~~~~  281 (319)
T cd08267         212 IFDAVGNSPFSLYRASLALKPGGRYVSVGGGPSGLLLVLLLLPLTLGGGGRRLKFFLAK---------PN-AEDLEQLAE  281 (319)
T ss_pred             EEECCCchHHHHHHhhhccCCCCEEEEeccccccccccccccchhhccccceEEEEEec---------CC-HHHHHHHHH
Confidence            9999985432  223344999999999985443211111   00111111222222211         01 556888999


Q ss_pred             HHHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEE
Q psy2961         159 MMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYI  198 (202)
Q Consensus       159 ~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~  198 (202)
                      ++.++.+.+.+.++|+++++++||+.+.  ++...+|+++
T Consensus       282 ~l~~~~~~~~~~~~~~~~~i~~a~~~~~--~~~~~~~vvv  319 (319)
T cd08267         282 LVEEGKLKPVIDSVYPLEDAPEAYRRLK--SGRARGKVVI  319 (319)
T ss_pred             HHHCCCeeeeeeeEEcHHHHHHHHHHHh--cCCCCCcEeC
Confidence            9999999877788999999999999998  7777778774

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=99.69  E-value=1.3e-15  Score=116.73  Aligned_cols=146  Identities=21%  Similarity=0.322  Sum_probs=111.9

Q ss_pred             ccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeCh--hHHHh-HHHhhCCC
Q psy2961           3 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE--EELRN-ISRDASIP   79 (202)
Q Consensus         3 ~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~--~~~~~-~~~~~~~~   79 (202)
                      ...+++++|++|+|.| ++++|++++|+|+..|+++++++.+.+  .++.+.++++|++.+ ++  .++.. +.....+.
T Consensus       157 ~~~~~~~~g~~vlI~g-~g~~g~~~~~la~~~G~~v~~~~~~~~--~~~~~~~~~~g~~~~-~~~~~~~~~~l~~~~~~~  232 (306)
T cd08258         157 AERSGIRPGDTVVVFG-PGPIGLLAAQVAKLQGATVVVVGTEKD--EVRLDVAKELGADAV-NGGEEDLAELVNEITDGD  232 (306)
T ss_pred             HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEECCCCC--HHHHHHHHHhCCccc-CCCcCCHHHHHHHHcCCC
Confidence            3456788999999977 569999999999999999877644332  235678888999877 64  35555 66666667


Q ss_pred             CCeEEEecCCCc-hHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHH
Q psy2961          80 KPKLALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTE  158 (202)
Q Consensus        80 ~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  158 (202)
                      ++|+++|++|+. .....+++|+++|+++.+|........++...++.+++++.|+++++           .++++++++
T Consensus       233 ~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~-----------~~~~~~~~~  301 (306)
T cd08258         233 GADVVIECSGAVPALEQALELLRKGGRIVQVGIFGPLAASIDVERIIQKELSVIGSRSST-----------PASWETALR  301 (306)
T ss_pred             CCCEEEECCCChHHHHHHHHHhhcCCEEEEEcccCCCCcccCHHHHhhcCcEEEEEecCc-----------hHhHHHHHH
Confidence            899999999764 44558999999999999997653344556667778999999998754           345888888


Q ss_pred             HHHcC
Q psy2961         159 MMRTG  163 (202)
Q Consensus       159 ~~~~g  163 (202)
                      ++++|
T Consensus       302 ~~~~~  306 (306)
T cd08258         302 LLASG  306 (306)
T ss_pred             HHhcC
Confidence            88765

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A

Probab=99.69  E-value=2.2e-17  Score=110.55  Aligned_cols=124  Identities=27%  Similarity=0.373  Sum_probs=79.0

Q ss_pred             cCCceEeChhHHHhHHHhhCCCCCeEEEecCC--CchH-HHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEE
Q psy2961          58 LGADYVFTEEELRNISRDASIPKPKLALNCVG--GNSA-TNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGH  134 (202)
Q Consensus        58 lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~g--~~~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~  134 (202)
                      ||+++++||.+.. .   ....++|+||||+|  ++.+ ..++++| ++|+++.++.      .........+...+...
T Consensus         1 LGAd~vidy~~~~-~---~~~~~~D~ViD~~g~~~~~~~~~~~~~l-~~G~~v~i~~------~~~~~~~~~~~~~~~~~   69 (127)
T PF13602_consen    1 LGADEVIDYRDTD-F---AGPGGVDVVIDTVGQTGESLLDASRKLL-PGGRVVSIGG------DLPSFARRLKGRSIRYS   69 (127)
T ss_dssp             CT-SEEEETTCSH-H---HTTS-EEEEEESS-CCHHHCGGGCCCTE-EEEEEEEE-S------HHHHHHHHHHCHHCEEE
T ss_pred             CCcCEEecCCCcc-c---cCCCCceEEEECCCCccHHHHHHHHHHC-CCCEEEEECC------cccchhhhhcccceEEE
Confidence            6899999875211 3   44578999999999  5555 3466788 9999999884      11111111222333333


Q ss_pred             echhHhhhcccHHHHHHHHHHHHHHHHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEE
Q psy2961         135 WMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYI  198 (202)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~  198 (202)
                      .......   . ....+.++++.+++++|+++|.+.++||++++++|++.+.  +++..||+||
T Consensus        70 ~~~~~~~---~-~~~~~~l~~l~~l~~~G~l~~~i~~~f~l~~~~~A~~~l~--~~~~~GKvVl  127 (127)
T PF13602_consen   70 FLFSVDP---N-AIRAEALEELAELVAEGKLKPPIDRVFPLEEAPEAHERLE--SGHARGKVVL  127 (127)
T ss_dssp             CCC-H-----H-HHHHHHHHHHHHHHHTTSS---EEEEEEGGGHHHHHHHHH--CT--SSEEEE
T ss_pred             EEEecCC---C-chHHHHHHHHHHHHHCCCeEEeeccEECHHHHHHHHHHHH--hCCCCCeEeC
Confidence            3221000   0 2246779999999999999999999999999999999999  9999999997

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=99.60  E-value=9e-14  Score=111.65  Aligned_cols=146  Identities=13%  Similarity=0.162  Sum_probs=102.2

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceE-eChh---------------HH
Q psy2961           6 NSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEE---------------EL   69 (202)
Q Consensus         6 ~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v-~~~~---------------~~   69 (202)
                      ++..++++|+|+|+| ++|+++++.|+.+|++|+++..+++    +++.++++|++.+ ++..               ++
T Consensus       160 aG~~pg~kVlViGaG-~iGL~Ai~~Ak~lGA~V~a~D~~~~----rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~  234 (509)
T PRK09424        160 AGKVPPAKVLVIGAG-VAGLAAIGAAGSLGAIVRAFDTRPE----VAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEF  234 (509)
T ss_pred             cCCcCCCEEEEECCc-HHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHcCCeEEEeccccccccccchhhhcchhH
Confidence            345789999999999 9999999999999998777766654    7899999999855 4321               22


Q ss_pred             Hh-HHHhhCC--CCCeEEEecCCCch-----H--HHHHHhcccCcEEEEEeccCCCC--cCCCcccccc-cCeeEEEEec
Q psy2961          70 RN-ISRDASI--PKPKLALNCVGGNS-----A--TNLLRTLVSKGVMVTYGGMSREP--VQIPTSAFIF-KDITLRGHWM  136 (202)
Q Consensus        70 ~~-~~~~~~~--~~~d~vid~~g~~~-----~--~~~~~~l~~~G~~v~~g~~~~~~--~~~~~~~~~~-~~~~~~g~~~  136 (202)
                      .+ ..+.+..  .++|++|+|++.+.     +  .+.++.++++|++++++...+.+  ...+...++. +++++.|++.
T Consensus       235 ~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~~GG~~e~t~~~~~v~~~~gVti~Gv~n  314 (509)
T PRK09424        235 IKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAENGGNCELTVPGEVVVTDNGVTIIGYTD  314 (509)
T ss_pred             HHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccCCCCCcccccCccceEeECCEEEEEeCC
Confidence            22 2222111  57999999999642     3  55899999999999999654443  3444455665 8999999763


Q ss_pred             hhHhhhcccHHHHHHHHHHHHHHHHcCCCCC
Q psy2961         137 TRWQKENKESAERKSMMNELTEMMRTGKLAA  167 (202)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  167 (202)
                      ..           .+...+..+++.++.++.
T Consensus       315 ~P-----------~~~p~~As~lla~~~i~l  334 (509)
T PRK09424        315 LP-----------SRLPTQSSQLYGTNLVNL  334 (509)
T ss_pred             Cc-----------hhHHHHHHHHHHhCCccH
Confidence            21           122334666666666543

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=99.60  E-value=3.2e-14  Score=111.56  Aligned_cols=164  Identities=12%  Similarity=0.114  Sum_probs=123.3

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEec
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNC   87 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~   87 (202)
                      ..+|++|+|.|+| ++|+.+++.++.+|++|+++..++.    +.+.++.+|++.+ +.++.  +      .++|+||+|
T Consensus       199 ~l~GktVvViG~G-~IG~~va~~ak~~Ga~ViV~d~d~~----R~~~A~~~G~~~~-~~~e~--v------~~aDVVI~a  264 (413)
T cd00401         199 MIAGKVAVVAGYG-DVGKGCAQSLRGQGARVIVTEVDPI----CALQAAMEGYEVM-TMEEA--V------KEGDIFVTT  264 (413)
T ss_pred             CCCCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEECChh----hHHHHHhcCCEEc-cHHHH--H------cCCCEEEEC
Confidence            4689999999999 9999999999999998777554443    6788888998543 22111  2      367999999


Q ss_pred             CCCchHHH--HHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHH--HHHHHHHcC
Q psy2961          88 VGGNSATN--LLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMN--ELTEMMRTG  163 (202)
Q Consensus        88 ~g~~~~~~--~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g  163 (202)
                      +|.+....  .+..++++|.++.+|..   +..++...+..+++++.++..+..          .-.++  ..++++.+|
T Consensus       265 tG~~~~i~~~~l~~mk~GgilvnvG~~---~~eId~~~L~~~el~i~g~~~~~~----------~~~~~~g~aI~LLa~G  331 (413)
T cd00401         265 TGNKDIITGEHFEQMKDGAIVCNIGHF---DVEIDVKGLKENAVEVVNIKPQVD----------RYELPDGRRIILLAEG  331 (413)
T ss_pred             CCCHHHHHHHHHhcCCCCcEEEEeCCC---CCccCHHHHHhhccEEEEccCCcc----------eEEcCCcchhhhhhCc
Confidence            99887654  48999999999999843   346777778888899888775421          00244  678999999


Q ss_pred             CC-C--CCccee-----echh-hHHHHHHHHhhhcCCC-CceEEEee
Q psy2961         164 KL-A--APAHKF-----VTLK-NFQEALMNTMSIQGKS-GVKYYIDF  200 (202)
Q Consensus       164 ~~-~--~~~~~~-----~~~~-~~~~a~~~~~~~~~~~-~gkvv~~~  200 (202)
                      ++ +  +.+++.     ++++ ++.+++..+.  ++.. ..|+++.+
T Consensus       332 rlvnl~~~~gH~~~vmd~sf~~q~l~a~~l~~--~~~~~~~kV~~~p  376 (413)
T cd00401         332 RLVNLGCATGHPSFVMSNSFTNQVLAQIELWT--NRDKYEVGVYFLP  376 (413)
T ss_pred             CCCCCcccCCCccceechhHHHHHHHHHHHHh--cCCcCCCcEEECC
Confidence            88 3  346677     8899 9999999998  5443 35777654

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.59  E-value=3.9e-14  Score=106.29  Aligned_cols=130  Identities=28%  Similarity=0.384  Sum_probs=100.7

Q ss_pred             ccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChh--HHHh-HHHhhCCC
Q psy2961           3 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRDASIP   79 (202)
Q Consensus         3 ~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~--~~~~-~~~~~~~~   79 (202)
                      .+...+.+|++|+|+|+++ +|++++++++..|.++++++++++    +.+.++++|++.++++.  +... +. ...+.
T Consensus       127 ~~~~~~~~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~  200 (271)
T cd05188         127 RRAGVLKPGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRSDE----KLELAKELGADHVIDYKEEDLEEELR-LTGGG  200 (271)
T ss_pred             HhccCCCCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCCHH----HHHHHHHhCCceeccCCcCCHHHHHH-HhcCC
Confidence            3445568999999999997 999999999999999988887765    57888889988887643  3333 44 45557


Q ss_pred             CCeEEEecCCC-chHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechh
Q psy2961          80 KPKLALNCVGG-NSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTR  138 (202)
Q Consensus        80 ~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~  138 (202)
                      ++|+++|++++ ......+++++++|+++.++..............+.+++++.++....
T Consensus       201 ~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (271)
T cd05188         201 GADVVIDAVGGPETLAQALRLLRPGGRIVVVGGTSGGPPLDDLRRLLFKELTIIGSTGGT  260 (271)
T ss_pred             CCCEEEECCCCHHHHHHHHHhcccCCEEEEEccCCCCCCcccHHHHHhcceEEEEeecCC
Confidence            89999999998 556668999999999999986654332222445678899999988654

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=99.00  E-value=3.5e-08  Score=79.68  Aligned_cols=123  Identities=15%  Similarity=0.192  Sum_probs=84.8

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-Ch---------------hHHHh
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TE---------------EELRN   71 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~---------------~~~~~   71 (202)
                      ..++++|+|+|+| .+|++++++++.+|+.|+++..+.+    +++.++++|++.+. +.               +++.+
T Consensus       161 ~vp~akVlViGaG-~iGl~Aa~~ak~lGA~V~v~d~~~~----rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~  235 (511)
T TIGR00561       161 KVPPAKVLVIGAG-VAGLAAIGAANSLGAIVRAFDTRPE----VKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIA  235 (511)
T ss_pred             CCCCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHcCCeEEeccccccccccccceeecCHHHHH
Confidence            3467999999998 9999999999999999877776665    68888889987633 21               12222


Q ss_pred             -HHHhhC--CCCCeEEEecC---CCch----HHHHHHhcccCcEEEEEeccCCCCcCCCc-ccccc--cCeeEEEEe
Q psy2961          72 -ISRDAS--IPKPKLALNCV---GGNS----ATNLLRTLVSKGVMVTYGGMSREPVQIPT-SAFIF--KDITLRGHW  135 (202)
Q Consensus        72 -~~~~~~--~~~~d~vid~~---g~~~----~~~~~~~l~~~G~~v~~g~~~~~~~~~~~-~~~~~--~~~~~~g~~  135 (202)
                       ..+.+.  ..++|++|+|+   |.+.    +.+.++.|++|+.+|+++...+.+..... .+.+.  .++.+.+..
T Consensus       236 ~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d~GGn~E~t~p~~~~~~~~GV~~~gv~  312 (511)
T TIGR00561       236 AEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAEQGGNCEYTKPGEVYTTENQVKVIGYT  312 (511)
T ss_pred             HHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeCCCCCEEEecCceEEEecCCEEEEeeC
Confidence             222222  25799999999   5433    34478999999999999866655432221 12222  347777755

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>TIGR00518 alaDH alanine dehydrogenase

Probab=98.74  E-value=8.7e-07  Score=69.67  Aligned_cols=150  Identities=17%  Similarity=0.124  Sum_probs=87.9

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHH-hcCCceEeChhHHHhHHHhhCCCCCeEEEecCC
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK-SLGADYVFTEEELRNISRDASIPKPKLALNCVG   89 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~-~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~g   89 (202)
                      +.+|+|.|+| .+|+.+++.++.+|++|+++.++++    +.+.+. .++........+...+.+..  ..+|++|+|++
T Consensus       167 ~~~VlViGaG-~vG~~aa~~a~~lGa~V~v~d~~~~----~~~~l~~~~g~~v~~~~~~~~~l~~~l--~~aDvVI~a~~  239 (370)
T TIGR00518       167 PGDVTIIGGG-VVGTNAAKMANGLGATVTILDINID----RLRQLDAEFGGRIHTRYSNAYEIEDAV--KRADLLIGAVL  239 (370)
T ss_pred             CceEEEEcCC-HHHHHHHHHHHHCCCeEEEEECCHH----HHHHHHHhcCceeEeccCCHHHHHHHH--ccCCEEEEccc
Confidence            3458899997 9999999999999998777665544    445553 44543222221111133322  46899999983


Q ss_pred             ---C--ch--HHHHHHhcccCcEEEEEeccCCCCcCCC------cccccccCeeEEEEe-chhHhhhcccHHHHHHHHHH
Q psy2961          90 ---G--NS--ATNLLRTLVSKGVMVTYGGMSREPVQIP------TSAFIFKDITLRGHW-MTRWQKENKESAERKSMMNE  155 (202)
Q Consensus        90 ---~--~~--~~~~~~~l~~~G~~v~~g~~~~~~~~~~------~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~  155 (202)
                         .  +.  ....++.+++++.++.++...+......      .+.....++.+.+.. +.+..............+..
T Consensus       240 ~~g~~~p~lit~~~l~~mk~g~vIvDva~d~GG~~e~~~~t~~d~p~~~~~Gv~~~~v~nlP~~~p~~aS~~~~~~l~~~  319 (370)
T TIGR00518       240 IPGAKAPKLVSNSLVAQMKPGAVIVDVAIDQGGCVETSRPTTHDQPTYAVHDVVHYCVANMPGAVPKTSTYALTNATMPY  319 (370)
T ss_pred             cCCCCCCcCcCHHHHhcCCCCCEEEEEecCCCCCccCCcCCCCCCCEEEECCeEEEEeCCcccccHHHHHHHHHHHHHHH
Confidence               2  22  2347788999999999986655433221      112333456666652 33322222221233455666


Q ss_pred             HHHHHHcCCCCC
Q psy2961         156 LTEMMRTGKLAA  167 (202)
Q Consensus       156 ~~~~~~~g~~~~  167 (202)
                      +..+..+|.+.+
T Consensus       320 l~~~~~~g~~~~  331 (370)
T TIGR00518       320 VLELANHGWRAA  331 (370)
T ss_pred             HHHHHhcccccc
Confidence            667776675554

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=98.67  E-value=1.7e-06  Score=66.02  Aligned_cols=94  Identities=14%  Similarity=0.197  Sum_probs=71.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVG   89 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~g   89 (202)
                      .+.+|+|+|.| .+|..+++.++.+|++|+++.++.+    +.+.++++|.+.+ ...++.+   ..  .++|+||+|++
T Consensus       151 ~g~kvlViG~G-~iG~~~a~~L~~~Ga~V~v~~r~~~----~~~~~~~~G~~~~-~~~~l~~---~l--~~aDiVI~t~p  219 (296)
T PRK08306        151 HGSNVLVLGFG-RTGMTLARTLKALGANVTVGARKSA----HLARITEMGLSPF-HLSELAE---EV--GKIDIIFNTIP  219 (296)
T ss_pred             CCCEEEEECCc-HHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHcCCeee-cHHHHHH---Hh--CCCCEEEECCC
Confidence            68999999998 8999999999999998888777654    4677778887643 3333332   22  46899999987


Q ss_pred             CchHH-HHHHhcccCcEEEEEeccCC
Q psy2961          90 GNSAT-NLLRTLVSKGVMVTYGGMSR  114 (202)
Q Consensus        90 ~~~~~-~~~~~l~~~G~~v~~g~~~~  114 (202)
                      ..... ..++.+++++.++.++..++
T Consensus       220 ~~~i~~~~l~~~~~g~vIIDla~~pg  245 (296)
T PRK08306        220 ALVLTKEVLSKMPPEALIIDLASKPG  245 (296)
T ss_pred             hhhhhHHHHHcCCCCcEEEEEccCCC
Confidence            65443 36788999999999886554

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.67  E-value=5e-07  Score=68.27  Aligned_cols=173  Identities=16%  Similarity=0.181  Sum_probs=93.5

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCC--cEEEEecCcccHHHHHHHHHhcCCceEeC-hhHHHhHHHhhCCCCC
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWGL--KTINIVRNRDDIDKLKSYLKSLGADYVFT-EEELRNISRDASIPKP   81 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~--~vi~~~~~~~~~~~~~~~~~~lg~~~v~~-~~~~~~~~~~~~~~~~   81 (202)
                      .+.+++|++||.+|+|+  |..++++++..|.  +++++..+++..+...+.....+.+.+.. ..+..++.  .....+
T Consensus        72 ~~~~~~g~~VLDiG~G~--G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~--~~~~~f  147 (272)
T PRK11873         72 LAELKPGETVLDLGSGG--GFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALP--VADNSV  147 (272)
T ss_pred             hccCCCCCEEEEeCCCC--CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCC--CCCCce
Confidence            35678999999999984  7777888887775  47777666653222222223344432211 12222211  123579


Q ss_pred             eEEEecCC-----C--chHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHH
Q psy2961          82 KLALNCVG-----G--NSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMN  154 (202)
Q Consensus        82 d~vid~~g-----~--~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  154 (202)
                      |+|+....     .  ..+..+.++|+|||+++..+......  +  ...+.+...+.+......           ....
T Consensus       148 D~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~--~--~~~~~~~~~~~~~~~~~~-----------~~~~  212 (272)
T PRK11873        148 DVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGE--L--PEEIRNDAELYAGCVAGA-----------LQEE  212 (272)
T ss_pred             eEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCC--C--CHHHHHhHHHHhccccCC-----------CCHH
Confidence            99885431     1  12345889999999999876443221  1  112222222221111100           0133


Q ss_pred             HHHHHHHcCCCCC---CcceeechhhHHHHHHHH--hhhcCCCCceEEE
Q psy2961         155 ELTEMMRTGKLAA---PAHKFVTLKNFQEALMNT--MSIQGKSGVKYYI  198 (202)
Q Consensus       155 ~~~~~~~~g~~~~---~~~~~~~~~~~~~a~~~~--~~~~~~~~gkvv~  198 (202)
                      ++.+++.+-.+..   .....++++++.++++.+  .  .+...++.+.
T Consensus       213 e~~~~l~~aGf~~v~i~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~  259 (272)
T PRK11873        213 EYLAMLAEAGFVDITIQPKREYRIPDAREFLEDWGIA--PGRQLDGYIV  259 (272)
T ss_pred             HHHHHHHHCCCCceEEEeccceecccHHHHHHHhccc--cccccCceEE
Confidence            4555666533443   234567888999999888  5  4444445443

>KOG1205|consensus

Probab=98.55  E-value=2.3e-06  Score=64.12  Aligned_cols=106  Identities=20%  Similarity=0.338  Sum_probs=73.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCce-Ee----C---hhHHHh-HHHhh-CCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-VF----T---EEELRN-ISRDA-SIP   79 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-v~----~---~~~~~~-~~~~~-~~~   79 (202)
                      .|..|+|+||++|+|.+.+.-....|++++.++++.+.+++-.+.+++++... ++    |   .++... +.+.. .-+
T Consensus        11 ~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~fg   90 (282)
T KOG1205|consen   11 AGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHFG   90 (282)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhcC
Confidence            57899999999999999999999999999999998876544446666666544 33    2   233333 32221 236


Q ss_pred             CCeEEEecCCCc--------------------------hHHHHHHhccc-C-cEEEEEeccCCC
Q psy2961          80 KPKLALNCVGGN--------------------------SATNLLRTLVS-K-GVMVTYGGMSRE  115 (202)
Q Consensus        80 ~~d~vid~~g~~--------------------------~~~~~~~~l~~-~-G~~v~~g~~~~~  115 (202)
                      ++|+.++.+|-.                          .+..++..|+. + |++|.+++..+.
T Consensus        91 ~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~  154 (282)
T KOG1205|consen   91 RVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGK  154 (282)
T ss_pred             CCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEeccccc
Confidence            899999988831                          11224555543 3 999999877764

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=98.54  E-value=1.4e-06  Score=69.22  Aligned_cols=91  Identities=16%  Similarity=0.219  Sum_probs=67.8

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCV   88 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~   88 (202)
                      -+|++|+|.|.| .+|..+++.++.+|++|+++...+.    +...+...|+. +.+   ..+   ..  .++|++|+++
T Consensus       210 l~Gk~VlViG~G-~IG~~vA~~lr~~Ga~ViV~d~dp~----ra~~A~~~G~~-v~~---l~e---al--~~aDVVI~aT  275 (425)
T PRK05476        210 IAGKVVVVAGYG-DVGKGCAQRLRGLGARVIVTEVDPI----CALQAAMDGFR-VMT---MEE---AA--ELGDIFVTAT  275 (425)
T ss_pred             CCCCEEEEECCC-HHHHHHHHHHHhCCCEEEEEcCCch----hhHHHHhcCCE-ecC---HHH---HH--hCCCEEEECC
Confidence            389999999998 9999999999999998777665553    33444445654 332   222   11  3689999999


Q ss_pred             CCchHHH--HHHhcccCcEEEEEeccC
Q psy2961          89 GGNSATN--LLRTLVSKGVMVTYGGMS  113 (202)
Q Consensus        89 g~~~~~~--~~~~l~~~G~~v~~g~~~  113 (202)
                      |......  .+..+++++.++.+|...
T Consensus       276 G~~~vI~~~~~~~mK~GailiNvG~~d  302 (425)
T PRK05476        276 GNKDVITAEHMEAMKDGAILANIGHFD  302 (425)
T ss_pred             CCHHHHHHHHHhcCCCCCEEEEcCCCC
Confidence            9876543  688999999999998554

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=98.52  E-value=3.5e-06  Score=62.16  Aligned_cols=104  Identities=25%  Similarity=0.260  Sum_probs=65.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe--C---hhHHHh-HHHhhC-CCCCe
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--T---EEELRN-ISRDAS-IPKPK   82 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~--~---~~~~~~-~~~~~~-~~~~d   82 (202)
                      ++++|+|+|++|++|..+++.+...|++|+.++++++...+..+.+...+.-..+  |   ++.... +.+... -.++|
T Consensus         4 ~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id   83 (238)
T PRK05786          4 KGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAID   83 (238)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence            4689999999999999999999999999999988775322111222222322222  2   233333 332211 14689


Q ss_pred             EEEecCCCch------------------------HHHHHHhcccCcEEEEEeccC
Q psy2961          83 LALNCVGGNS------------------------ATNLLRTLVSKGVMVTYGGMS  113 (202)
Q Consensus        83 ~vid~~g~~~------------------------~~~~~~~l~~~G~~v~~g~~~  113 (202)
                      .++.+.+...                        ...+++.++.+|+++.++...
T Consensus        84 ~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~  138 (238)
T PRK05786         84 GLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSMS  138 (238)
T ss_pred             EEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecch
Confidence            9998887421                        112345667789999988654

>TIGR00936 ahcY adenosylhomocysteinase

Probab=98.51  E-value=1.5e-06  Score=68.55  Aligned_cols=91  Identities=19%  Similarity=0.237  Sum_probs=68.5

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEec
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNC   87 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~   87 (202)
                      ..+|++|+|.|.| .+|..+++.++.+|++|+++...+.    +...+...|+. +.+.++.  +      .+.|++|++
T Consensus       192 ~l~Gk~VvViG~G-~IG~~vA~~ak~~Ga~ViV~d~dp~----r~~~A~~~G~~-v~~leea--l------~~aDVVIta  257 (406)
T TIGR00936       192 LIAGKTVVVAGYG-WCGKGIAMRARGMGARVIVTEVDPI----RALEAAMDGFR-VMTMEEA--A------KIGDIFITA  257 (406)
T ss_pred             CCCcCEEEEECCC-HHHHHHHHHHhhCcCEEEEEeCChh----hHHHHHhcCCE-eCCHHHH--H------hcCCEEEEC
Confidence            4689999999999 9999999999999999888665553    34445555663 3322111  2      357999999


Q ss_pred             CCCchHHH--HHHhcccCcEEEEEecc
Q psy2961          88 VGGNSATN--LLRTLVSKGVMVTYGGM  112 (202)
Q Consensus        88 ~g~~~~~~--~~~~l~~~G~~v~~g~~  112 (202)
                      +|......  .+..+++++.++.+|..
T Consensus       258 TG~~~vI~~~~~~~mK~GailiN~G~~  284 (406)
T TIGR00936       258 TGNKDVIRGEHFENMKDGAIVANIGHF  284 (406)
T ss_pred             CCCHHHHHHHHHhcCCCCcEEEEECCC
Confidence            99887643  78899999999998854

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PLN02494 adenosylhomocysteinase

Probab=98.43  E-value=2.8e-06  Score=67.86  Aligned_cols=89  Identities=13%  Similarity=0.225  Sum_probs=68.5

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhCCCCCeEEEec
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNC   87 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~~~~~d~vid~   87 (202)
                      -.|++|+|.|.| .+|..+++.++.+|++|+++...+.    +...+...|...+ +   ..+ +      ...|++++|
T Consensus       252 LaGKtVvViGyG-~IGr~vA~~aka~Ga~VIV~e~dp~----r~~eA~~~G~~vv-~---leEal------~~ADVVI~t  316 (477)
T PLN02494        252 IAGKVAVICGYG-DVGKGCAAAMKAAGARVIVTEIDPI----CALQALMEGYQVL-T---LEDVV------SEADIFVTT  316 (477)
T ss_pred             cCCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEeCCch----hhHHHHhcCCeec-c---HHHHH------hhCCEEEEC
Confidence            579999999999 9999999999999998777665543    3345555666532 2   222 2      357999999


Q ss_pred             CCCchH--HHHHHhcccCcEEEEEecc
Q psy2961          88 VGGNSA--TNLLRTLVSKGVMVTYGGM  112 (202)
Q Consensus        88 ~g~~~~--~~~~~~l~~~G~~v~~g~~  112 (202)
                      +|....  ...+..|++++.++.+|..
T Consensus       317 TGt~~vI~~e~L~~MK~GAiLiNvGr~  343 (477)
T PLN02494        317 TGNKDIIMVDHMRKMKNNAIVCNIGHF  343 (477)
T ss_pred             CCCccchHHHHHhcCCCCCEEEEcCCC
Confidence            998765  3489999999999999853

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=98.39  E-value=3e-06  Score=61.62  Aligned_cols=77  Identities=19%  Similarity=0.263  Sum_probs=56.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHH-HhcCC--c--eEe---ChhHHHh-HHHhhCC-C
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGA--D--YVF---TEEELRN-ISRDASI-P   79 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~--~--~v~---~~~~~~~-~~~~~~~-~   79 (202)
                      .++.++|+||+||+|.++++.+...|++|+.+.++.+    +++.+ .+++.  .  ..+   |+.+... +...... +
T Consensus         5 ~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~d----rL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g   80 (246)
T COG4221           5 KGKVALITGASSGIGEATARALAEAGAKVVLAARREE----RLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFG   80 (246)
T ss_pred             CCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHH----HHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhC
Confidence            4578999999999999999999999999999999987    44444 45662  1  122   3444444 4443332 4


Q ss_pred             CCeEEEecCCC
Q psy2961          80 KPKLALNCVGG   90 (202)
Q Consensus        80 ~~d~vid~~g~   90 (202)
                      .+|++++.+|-
T Consensus        81 ~iDiLvNNAGl   91 (246)
T COG4221          81 RIDILVNNAGL   91 (246)
T ss_pred             cccEEEecCCC
Confidence            69999999984

>PRK12742 oxidoreductase; Provisional

Probab=98.37  E-value=1.4e-05  Score=58.86  Aligned_cols=99  Identities=13%  Similarity=0.159  Sum_probs=63.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHH-HHhcCCceEe-Ch---hHHHh-HHHhhCCCCCeE
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSY-LKSLGADYVF-TE---EELRN-ISRDASIPKPKL   83 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~-~~~lg~~~v~-~~---~~~~~-~~~~~~~~~~d~   83 (202)
                      .+++|||+|++|++|..+++.+...|++++.+.++..+   +.+. ..+++...+. |-   ..+.+ +.+   .+++|+
T Consensus         5 ~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~---~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~---~~~id~   78 (237)
T PRK12742          5 TGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKD---AAERLAQETGATAVQTDSADRDAVIDVVRK---SGALDI   78 (237)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHH---HHHHHHHHhCCeEEecCCCCHHHHHHHHHH---hCCCcE
Confidence            47899999999999999999999999998877654321   2223 3445554332 32   22333 322   246899


Q ss_pred             EEecCCCchH--------------------------HHHHHhcccCcEEEEEeccCC
Q psy2961          84 ALNCVGGNSA--------------------------TNLLRTLVSKGVMVTYGGMSR  114 (202)
Q Consensus        84 vid~~g~~~~--------------------------~~~~~~l~~~G~~v~~g~~~~  114 (202)
                      +|+++|....                          ..++..++..|+++.++....
T Consensus        79 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~  135 (237)
T PRK12742         79 LVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNG  135 (237)
T ss_pred             EEECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence            9999874210                          112344566789999886544

>PRK07109 short chain dehydrogenase; Provisional

Probab=98.35  E-value=1.2e-05  Score=62.67  Aligned_cols=81  Identities=16%  Similarity=0.262  Sum_probs=55.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .+.+|+|+|+++++|..+++.+...|++|+.++++++..++..+.+++.|.+...   |   +++... +..... -+++
T Consensus         7 ~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g~i   86 (334)
T PRK07109          7 GRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELGPI   86 (334)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCCCC
Confidence            4679999999999999999999999999999888776543334445555654322   3   333333 322211 1479


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|+++|.
T Consensus        87 D~lInnAg~   95 (334)
T PRK07109         87 DTWVNNAMV   95 (334)
T ss_pred             CEEEECCCc
Confidence            999999874

>PRK06139 short chain dehydrogenase; Provisional

Probab=98.33  E-value=5.5e-06  Score=64.36  Aligned_cols=81  Identities=22%  Similarity=0.354  Sum_probs=56.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .+++|||+|+++++|.++++.+...|++|+.+.++++..++..+.+++.|.+..+   |   .++... +.+... .+++
T Consensus         6 ~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   85 (330)
T PRK06139          6 HGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGGRI   85 (330)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence            5689999999999999999999999999999888776544334455556654322   2   233333 222211 2569


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|+++|.
T Consensus        86 D~lVnnAG~   94 (330)
T PRK06139         86 DVWVNNVGV   94 (330)
T ss_pred             CEEEECCCc
Confidence            999999973

>PRK08339 short chain dehydrogenase; Provisional

Probab=98.32  E-value=1.7e-05  Score=59.67  Aligned_cols=81  Identities=21%  Similarity=0.386  Sum_probs=53.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhc-CCce-Ee--C---hhHHHh-HHHhhCCCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL-GADY-VF--T---EEELRN-ISRDASIPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~l-g~~~-v~--~---~~~~~~-~~~~~~~~~~   81 (202)
                      .|.++||+|+++++|.++++.+...|++|+.+.++.+..++..+.+++. +... .+  |   +.+... +.+...-+++
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~i   86 (263)
T PRK08339          7 SGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGEP   86 (263)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCCC
Confidence            4789999999999999999999999999998887765433222333222 3221 11  2   334444 4333222569


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |+++.+.|.
T Consensus        87 D~lv~nag~   95 (263)
T PRK08339         87 DIFFFSTGG   95 (263)
T ss_pred             cEEEECCCC
Confidence            999998874

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=98.32  E-value=9.1e-06  Score=60.48  Aligned_cols=83  Identities=20%  Similarity=0.300  Sum_probs=57.7

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHh-cCCce-Ee--C---hhHHHhHHHhhC--C
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS-LGADY-VF--T---EEELRNISRDAS--I   78 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~-lg~~~-v~--~---~~~~~~~~~~~~--~   78 (202)
                      ...+.+++|+||++|+|...+..+...|++++.++|+.+.+.+..+.++. .|... ++  |   +++...+.....  +
T Consensus         3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~   82 (265)
T COG0300           3 PMKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERG   82 (265)
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcC
Confidence            35678999999999999999999999999999999999864444444433 23322 22  3   233333333222  2


Q ss_pred             CCCeEEEecCCC
Q psy2961          79 PKPKLALNCVGG   90 (202)
Q Consensus        79 ~~~d~vid~~g~   90 (202)
                      ..+|+.|+++|-
T Consensus        83 ~~IdvLVNNAG~   94 (265)
T COG0300          83 GPIDVLVNNAGF   94 (265)
T ss_pred             CcccEEEECCCc
Confidence            479999999984

>PRK05993 short chain dehydrogenase; Provisional

Probab=98.28  E-value=1.9e-05  Score=59.75  Aligned_cols=76  Identities=12%  Similarity=0.121  Sum_probs=53.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-C---hhHHHh-HHHhhC--CCCCe
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-T---EEELRN-ISRDAS--IPKPK   82 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~---~~~~~~-~~~~~~--~~~~d   82 (202)
                      .+.+|+|+|++|++|..+++.+...|++|+.++++++    +.+.+.+.+.+.+. |   ..+... +.+...  ++.+|
T Consensus         3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~----~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~id   78 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEE----DVAALEAEGLEAFQLDYAEPESIAALVAQVLELSGGRLD   78 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHCCceEEEccCCCHHHHHHHHHHHHHHcCCCcc
Confidence            4679999999999999999999889999999888765    34555555554332 3   233333 333211  24799


Q ss_pred             EEEecCC
Q psy2961          83 LALNCVG   89 (202)
Q Consensus        83 ~vid~~g   89 (202)
                      ++|.++|
T Consensus        79 ~li~~Ag   85 (277)
T PRK05993         79 ALFNNGA   85 (277)
T ss_pred             EEEECCC
Confidence            9999886

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.25  E-value=4.8e-06  Score=59.42  Aligned_cols=104  Identities=21%  Similarity=0.263  Sum_probs=73.3

Q ss_pred             ccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeC-hhHHHhHHHhhCCCCC
Q psy2961           3 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT-EEELRNISRDASIPKP   81 (202)
Q Consensus         3 ~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~-~~~~~~~~~~~~~~~~   81 (202)
                      .+...+++|++||-.|+|  .|..++-+|+..| +|+.+-+-++-.....+.++.+|...|.. ..|-..  -......|
T Consensus        65 ~~~L~~~~g~~VLEIGtG--sGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~--G~~~~aPy  139 (209)
T COG2518          65 LQLLELKPGDRVLEIGTG--SGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSK--GWPEEAPY  139 (209)
T ss_pred             HHHhCCCCCCeEEEECCC--chHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCccc--CCCCCCCc
Confidence            456778999999999997  5999999999988 77777666543222345567788754431 112111  11112679


Q ss_pred             eEEEecCCCchHHH-HHHhcccCcEEEEEec
Q psy2961          82 KLALNCVGGNSATN-LLRTLVSKGVMVTYGG  111 (202)
Q Consensus        82 d~vid~~g~~~~~~-~~~~l~~~G~~v~~g~  111 (202)
                      |.|+-+.+.+.... +++.|++||+++..-+
T Consensus       140 D~I~Vtaaa~~vP~~Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         140 DRIIVTAAAPEVPEALLDQLKPGGRLVIPVG  170 (209)
T ss_pred             CEEEEeeccCCCCHHHHHhcccCCEEEEEEc
Confidence            99998888887765 8899999999998654

>PRK06182 short chain dehydrogenase; Validated

Probab=98.23  E-value=3.1e-05  Score=58.43  Aligned_cols=77  Identities=19%  Similarity=0.215  Sum_probs=53.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-C---hhHHHh-HHHhhC-CCCCeE
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-T---EEELRN-ISRDAS-IPKPKL   83 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~---~~~~~~-~~~~~~-~~~~d~   83 (202)
                      .+.+++|+|++|++|..+++.+...|++|+.+.++.+    +.+.+...+...+. |   .+++.. +.+... ..++|+
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~----~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~   77 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVD----KMEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDV   77 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCE
Confidence            3679999999999999999998889999999887765    33434334443332 2   344444 433221 247999


Q ss_pred             EEecCCC
Q psy2961          84 ALNCVGG   90 (202)
Q Consensus        84 vid~~g~   90 (202)
                      +|.++|.
T Consensus        78 li~~ag~   84 (273)
T PRK06182         78 LVNNAGY   84 (273)
T ss_pred             EEECCCc
Confidence            9999874

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=98.21  E-value=5e-06  Score=69.21  Aligned_cols=122  Identities=12%  Similarity=0.130  Sum_probs=77.0

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCc-----------------ccHHHHHHHHHhcCCceEeChh--
Q psy2961           7 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR-----------------DDIDKLKSYLKSLGADYVFTEE--   67 (202)
Q Consensus         7 ~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~-----------------~~~~~~~~~~~~lg~~~v~~~~--   67 (202)
                      ..++|++|+|.|+| ++|+++++.++..|++|+++...+                 +....+.+.++++|++..++..  
T Consensus       133 ~~~~g~~V~VIGaG-paGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~  211 (564)
T PRK12771        133 APDTGKRVAVIGGG-PAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVG  211 (564)
T ss_pred             CCCCCCEEEEECCC-HHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEEC
Confidence            46789999999999 999999999999999977765322                 1223456788889988777532  


Q ss_pred             -HHHhHHHhhCCCCCeEEEecCCCchHHH-HHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEE
Q psy2961          68 -ELRNISRDASIPKPKLALNCVGGNSATN-LLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGH  134 (202)
Q Consensus        68 -~~~~~~~~~~~~~~d~vid~~g~~~~~~-~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~  134 (202)
                       +.. ... +. .++|+||+++|...... .+.....+|.+..++..... .... .....+++.+.|.
T Consensus       212 ~~~~-~~~-~~-~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~~l~~~-~~~~-~~~~gk~v~ViGg  275 (564)
T PRK12771        212 EDIT-LEQ-LE-GEFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAV-GEGE-PPFLGKRVVVIGG  275 (564)
T ss_pred             CcCC-HHH-HH-hhCCEEEEeeCCCCCCcCCCCCCccCCcEEHHHHHHHh-hccC-CcCCCCCEEEECC
Confidence             111 111 11 36899999999765432 34444556666555432211 0111 2334566777773

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=98.19  E-value=3.3e-05  Score=58.72  Aligned_cols=94  Identities=15%  Similarity=0.209  Sum_probs=67.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVG   89 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~g   89 (202)
                      .|++|+|.|.| .+|.++++.++.+|++|++..++++    +.+.+.++|... +...++.+   ..  .++|+||.|+.
T Consensus       150 ~gk~v~IiG~G-~iG~avA~~L~~~G~~V~v~~R~~~----~~~~~~~~g~~~-~~~~~l~~---~l--~~aDiVint~P  218 (287)
T TIGR02853       150 HGSNVMVLGFG-RTGMTIARTFSALGARVFVGARSSA----DLARITEMGLIP-FPLNKLEE---KV--AEIDIVINTIP  218 (287)
T ss_pred             CCCEEEEEcCh-HHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHCCCee-ecHHHHHH---Hh--ccCCEEEECCC
Confidence            57899999998 8999999999999998887776654    345555666543 23333333   22  46899999987


Q ss_pred             CchHH-HHHHhcccCcEEEEEeccCC
Q psy2961          90 GNSAT-NLLRTLVSKGVMVTYGGMSR  114 (202)
Q Consensus        90 ~~~~~-~~~~~l~~~G~~v~~g~~~~  114 (202)
                      ..... ..++.++++..++.++..++
T Consensus       219 ~~ii~~~~l~~~k~~aliIDlas~Pg  244 (287)
T TIGR02853       219 ALVLTADVLSKLPKHAVIIDLASKPG  244 (287)
T ss_pred             hHHhCHHHHhcCCCCeEEEEeCcCCC
Confidence            65433 36788899888888875443

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK12939 short chain dehydrogenase; Provisional

Probab=98.18  E-value=5.1e-05  Score=56.31  Aligned_cols=81  Identities=14%  Similarity=0.114  Sum_probs=53.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceE-e--C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-F--T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v-~--~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .+.+++|+|++|++|..++..+...|++++.+.++++...+..+.++..+.... +  |   +++... +.+... -.++
T Consensus         6 ~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   85 (250)
T PRK12939          6 AGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGGL   85 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            478999999999999999999999999998887776543333333344443321 1  2   233333 222211 1479


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.++|.
T Consensus        86 d~vi~~ag~   94 (250)
T PRK12939         86 DGLVNNAGI   94 (250)
T ss_pred             CEEEECCCC
Confidence            999999875

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=98.17  E-value=1.5e-05  Score=56.41  Aligned_cols=74  Identities=20%  Similarity=0.288  Sum_probs=52.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCC---ceEeC---hh---HHHh-HHHhhCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA---DYVFT---EE---ELRN-ISRDASIP   79 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~---~~v~~---~~---~~~~-~~~~~~~~   79 (202)
                      -|.+|||.|+++|+|+..++-...+|-+||.+.++++    +++.+++.-.   ..+.|   ..   .+.+ +.+.+  .
T Consensus         4 tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~----~L~e~~~~~p~~~t~v~Dv~d~~~~~~lvewLkk~~--P   77 (245)
T COG3967           4 TGNTILITGGASGIGLALAKRFLELGNTVIICGRNEE----RLAEAKAENPEIHTEVCDVADRDSRRELVEWLKKEY--P   77 (245)
T ss_pred             cCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHH----HHHHHHhcCcchheeeecccchhhHHHHHHHHHhhC--C
Confidence            3789999999999999999999999999998887776    5666654322   22333   22   2333 43333  5


Q ss_pred             CCeEEEecCC
Q psy2961          80 KPKLALNCVG   89 (202)
Q Consensus        80 ~~d~vid~~g   89 (202)
                      ..+++++++|
T Consensus        78 ~lNvliNNAG   87 (245)
T COG3967          78 NLNVLINNAG   87 (245)
T ss_pred             chheeeeccc
Confidence            6789998887

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=98.16  E-value=2.8e-05  Score=63.89  Aligned_cols=107  Identities=16%  Similarity=0.242  Sum_probs=66.2

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHh-----cCC------ceEe-ChhHHHhH
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS-----LGA------DYVF-TEEELRNI   72 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~-----lg~------~~v~-~~~~~~~~   72 (202)
                      ..+.+.|.+|||+||+|++|..+++.+...|++|++++++.+......+.+.+     .|.      ..+. |-.+...+
T Consensus        74 ~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI  153 (576)
T PLN03209         74 ELDTKDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQI  153 (576)
T ss_pred             ccccCCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHH
Confidence            34567899999999999999999999988999999998877642211121211     121      1121 22222224


Q ss_pred             HHhhCCCCCeEEEecCCCch----------------HHHHHHhccc--CcEEEEEeccC
Q psy2961          73 SRDASIPKPKLALNCVGGNS----------------ATNLLRTLVS--KGVMVTYGGMS  113 (202)
Q Consensus        73 ~~~~~~~~~d~vid~~g~~~----------------~~~~~~~l~~--~G~~v~~g~~~  113 (202)
                      .+..  .++|+||.++|...                ...+++.+..  .++||.++...
T Consensus       154 ~~aL--ggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSSig  210 (576)
T PLN03209        154 GPAL--GNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTSLG  210 (576)
T ss_pred             HHHh--cCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEccch
Confidence            4433  57899999987531                1113343332  37999988654

>PRK06198 short chain dehydrogenase; Provisional

Probab=98.16  E-value=0.00025  Score=53.03  Aligned_cols=81  Identities=20%  Similarity=0.271  Sum_probs=52.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCc-EEEEecCcccHHHHHHHHHhcCCceE---eC---hhHHHh-HHHhh-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLGADYV---FT---EEELRN-ISRDA-SIPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg~~~v---~~---~~~~~~-~~~~~-~~~~   80 (202)
                      .+.+++|.|+++++|..+++.+...|++ |+.+.++.+...+..+.+++.+....   .|   ++++.+ +.... .-++
T Consensus         5 ~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   84 (260)
T PRK06198          5 DGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADEAFGR   84 (260)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            5689999999999999999999999998 77777665432222334444454321   12   233333 22211 1146


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|++|.+.|.
T Consensus        85 id~li~~ag~   94 (260)
T PRK06198         85 LDALVNAAGL   94 (260)
T ss_pred             CCEEEECCCc
Confidence            9999999974

>PRK05693 short chain dehydrogenase; Provisional

Probab=98.14  E-value=6.3e-05  Score=56.79  Aligned_cols=75  Identities=17%  Similarity=0.177  Sum_probs=52.0

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceE-eC---hhHHHh-HHHhhC-CCCCeEEE
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FT---EEELRN-ISRDAS-IPKPKLAL   85 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v-~~---~~~~~~-~~~~~~-~~~~d~vi   85 (202)
                      .++||+|++|++|..+++.+...|++|+.++++.+    +.+.+...+...+ .|   .++... +..... .+++|++|
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi   77 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAE----DVEALAAAGFTAVQLDVNDGAALARLAEELEAEHGGLDVLI   77 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence            47999999999999999999999999998887764    3444444454433 23   333433 333221 24699999


Q ss_pred             ecCCC
Q psy2961          86 NCVGG   90 (202)
Q Consensus        86 d~~g~   90 (202)
                      +++|.
T Consensus        78 ~~ag~   82 (274)
T PRK05693         78 NNAGY   82 (274)
T ss_pred             ECCCC
Confidence            99983

>PRK07904 short chain dehydrogenase; Provisional

Probab=98.13  E-value=3.9e-05  Score=57.35  Aligned_cols=83  Identities=14%  Similarity=0.117  Sum_probs=53.9

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHC-CCcEEEEecCccc-HHHHHHHHHhcCCc--eEe--C---hhHHHh-HHHhhC
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDD-IDKLKSYLKSLGAD--YVF--T---EEELRN-ISRDAS   77 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~-g~~vi~~~~~~~~-~~~~~~~~~~lg~~--~v~--~---~~~~~~-~~~~~~   77 (202)
                      +..+.+|+|+|+++++|..+++-+... |++|+.+.++++. .++..+.+++.+..  .++  |   +.+... +.+...
T Consensus         5 ~~~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~   84 (253)
T PRK07904          5 VGNPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFA   84 (253)
T ss_pred             cCCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHh
Confidence            456779999999999999999877666 5899998887763 33333445554431  122  2   233333 444333


Q ss_pred             CCCCeEEEecCCC
Q psy2961          78 IPKPKLALNCVGG   90 (202)
Q Consensus        78 ~~~~d~vid~~g~   90 (202)
                      .+++|++|.+.|.
T Consensus        85 ~g~id~li~~ag~   97 (253)
T PRK07904         85 GGDVDVAIVAFGL   97 (253)
T ss_pred             cCCCCEEEEeeec
Confidence            3579999887764

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=98.13  E-value=3.1e-05  Score=57.91  Aligned_cols=81  Identities=16%  Similarity=0.208  Sum_probs=54.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhh-CCCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDA-SIPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~-~~~~~   81 (202)
                      .+.++||+|++|++|..+++.+...|++|+.+.++++...+..+.+++.+....+   |   ...+.. +.... ..+++
T Consensus         6 ~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~   85 (262)
T PRK13394          6 NGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFGSV   85 (262)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            4689999999999999999999999999998888775433344445555544222   2   223333 22211 11468


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.++|.
T Consensus        86 d~vi~~ag~   94 (262)
T PRK13394         86 DILVSNAGI   94 (262)
T ss_pred             CEEEECCcc
Confidence            999999874

>KOG1201|consensus

Probab=98.13  E-value=3.7e-05  Score=57.60  Aligned_cols=79  Identities=18%  Similarity=0.326  Sum_probs=57.6

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCc--eEeC---hhHHHh----HHHhhCCC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD--YVFT---EEELRN----ISRDASIP   79 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~--~v~~---~~~~~~----~~~~~~~~   79 (202)
                      -.|+.|||+|+|+|+|.+.++-....|++++...-+.+...+..+.+++.|..  ++.|   +++...    +++..  +
T Consensus        36 v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~--G  113 (300)
T KOG1201|consen   36 VSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEV--G  113 (300)
T ss_pred             ccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhc--C
Confidence            36899999999999999998888888997766666666666667777766622  2233   444333    44444  5


Q ss_pred             CCeEEEecCC
Q psy2961          80 KPKLALNCVG   89 (202)
Q Consensus        80 ~~d~vid~~g   89 (202)
                      .+|++++.+|
T Consensus       114 ~V~ILVNNAG  123 (300)
T KOG1201|consen  114 DVDILVNNAG  123 (300)
T ss_pred             CceEEEeccc
Confidence            7999999988

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=98.12  E-value=2.7e-05  Score=55.07  Aligned_cols=92  Identities=13%  Similarity=0.178  Sum_probs=63.3

Q ss_pred             EEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCCCeEEEecCCCch
Q psy2961          14 VIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNCVGGNS   92 (202)
Q Consensus        14 VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~vid~~g~~~   92 (202)
                      |+|+||+|.+|..+++.+...|.+|+++++++++    .+.  ..+.+.+. |..+...+.+..  .++|.||.++|...
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~----~~~--~~~~~~~~~d~~d~~~~~~al--~~~d~vi~~~~~~~   72 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSK----AED--SPGVEIIQGDLFDPDSVKAAL--KGADAVIHAAGPPP   72 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGG----HHH--CTTEEEEESCTTCHHHHHHHH--TTSSEEEECCHSTT
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchh----ccc--ccccccceeeehhhhhhhhhh--hhcchhhhhhhhhc
Confidence            7899999999999999999999999999999874    233  34444433 334443344444  47999999998422


Q ss_pred             -----HHHHHHhcccC--cEEEEEeccC
Q psy2961          93 -----ATNLLRTLVSK--GVMVTYGGMS  113 (202)
Q Consensus        93 -----~~~~~~~l~~~--G~~v~~g~~~  113 (202)
                           ...+++.++..  .+++.++...
T Consensus        73 ~~~~~~~~~~~a~~~~~~~~~v~~s~~~  100 (183)
T PF13460_consen   73 KDVDAAKNIIEAAKKAGVKRVVYLSSAG  100 (183)
T ss_dssp             THHHHHHHHHHHHHHTTSSEEEEEEETT
T ss_pred             ccccccccccccccccccccceeeeccc
Confidence                 22345555443  3788777544

...

>PRK08324 short chain dehydrogenase; Validated

Probab=98.11  E-value=4.6e-05  Score=64.89  Aligned_cols=77  Identities=16%  Similarity=0.198  Sum_probs=51.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCC--c--eE-eC---hhHHHh-HHHhhC-CC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA--D--YV-FT---EEELRN-ISRDAS-IP   79 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~--~--~v-~~---~~~~~~-~~~~~~-~~   79 (202)
                      +|++|||+|++|++|..+++.+...|++|+.+.++.+..   ......++.  .  .+ .|   ..+... +.+... .+
T Consensus       421 ~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~---~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g  497 (681)
T PRK08324        421 AGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAA---EAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFG  497 (681)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHH---HHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            678999999999999999999999999988888776532   122233332  1  11 12   233333 333211 24


Q ss_pred             CCeEEEecCC
Q psy2961          80 KPKLALNCVG   89 (202)
Q Consensus        80 ~~d~vid~~g   89 (202)
                      ++|++|+++|
T Consensus       498 ~iDvvI~~AG  507 (681)
T PRK08324        498 GVDIVVSNAG  507 (681)
T ss_pred             CCCEEEECCC
Confidence            7999999998

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=98.09  E-value=1.5e-05  Score=60.10  Aligned_cols=99  Identities=22%  Similarity=0.292  Sum_probs=61.5

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCce---Ee--ChhHHHhHHHhh
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY---VF--TEEELRNISRDA   76 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~---v~--~~~~~~~~~~~~   76 (202)
                      +.+.++++||++||-+|+|  .|..++.+|+..|++|++++-++++.....+.+++.|...   +.  |+.++.      
T Consensus        54 ~~~~~~l~~G~~vLDiGcG--wG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~------  125 (273)
T PF02353_consen   54 LCEKLGLKPGDRVLDIGCG--WGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP------  125 (273)
T ss_dssp             HHTTTT--TT-EEEEES-T--TSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG--------
T ss_pred             HHHHhCCCCCCEEEEeCCC--ccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC------
Confidence            3467889999999999997  6889999999999999999999886554455666666431   11  333321      


Q ss_pred             CCCCCeEEEe-----cCCCch----HHHHHHhcccCcEEEEEe
Q psy2961          77 SIPKPKLALN-----CVGGNS----ATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        77 ~~~~~d~vid-----~~g~~~----~~~~~~~l~~~G~~v~~g  110 (202)
                        ..+|.|+-     .+|...    +..+-++|+|||++++-.
T Consensus       126 --~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~  166 (273)
T PF02353_consen  126 --GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT  166 (273)
T ss_dssp             ---S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred             --CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence              37788754     344332    233678999999998643

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=98.09  E-value=3.1e-05  Score=62.20  Aligned_cols=91  Identities=15%  Similarity=0.235  Sum_probs=66.9

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEec
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNC   87 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~   87 (202)
                      .-.|++|+|.|.| .+|..+++.++.+|++|+++...+.    +...+...|+..+ +   +.+   ..  ...|+|+.+
T Consensus       251 ~LaGKtVgVIG~G-~IGr~vA~rL~a~Ga~ViV~e~dp~----~a~~A~~~G~~~~-~---lee---ll--~~ADIVI~a  316 (476)
T PTZ00075        251 MIAGKTVVVCGYG-DVGKGCAQALRGFGARVVVTEIDPI----CALQAAMEGYQVV-T---LED---VV--ETADIFVTA  316 (476)
T ss_pred             CcCCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEeCCch----hHHHHHhcCceec-c---HHH---HH--hcCCEEEEC
Confidence            4579999999999 8999999999999998777655543    2323334565432 2   222   11  467999999


Q ss_pred             CCCchHH--HHHHhcccCcEEEEEecc
Q psy2961          88 VGGNSAT--NLLRTLVSKGVMVTYGGM  112 (202)
Q Consensus        88 ~g~~~~~--~~~~~l~~~G~~v~~g~~  112 (202)
                      +|.....  ..+..|++++.++.+|..
T Consensus       317 tGt~~iI~~e~~~~MKpGAiLINvGr~  343 (476)
T PTZ00075        317 TGNKDIITLEHMRRMKNNAIVGNIGHF  343 (476)
T ss_pred             CCcccccCHHHHhccCCCcEEEEcCCC
Confidence            9887654  478999999999999854

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.08  E-value=2.6e-05  Score=52.58  Aligned_cols=92  Identities=14%  Similarity=0.200  Sum_probs=55.7

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCc-EEEEecCcccHHHHHHHHHhcCCc--eEeChhHHHh-HHHhhCCCCCeEE
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLGAD--YVFTEEELRN-ISRDASIPKPKLA   84 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg~~--~v~~~~~~~~-~~~~~~~~~~d~v   84 (202)
                      -.+.+|+|.|+| ++|.+++..+...|++ ++.+.++.++   ..+.++.++..  .++..+++.+ +      ..+|+|
T Consensus        10 l~~~~vlviGaG-g~ar~v~~~L~~~g~~~i~i~nRt~~r---a~~l~~~~~~~~~~~~~~~~~~~~~------~~~Div   79 (135)
T PF01488_consen   10 LKGKRVLVIGAG-GAARAVAAALAALGAKEITIVNRTPER---AEALAEEFGGVNIEAIPLEDLEEAL------QEADIV   79 (135)
T ss_dssp             GTTSEEEEESSS-HHHHHHHHHHHHTTSSEEEEEESSHHH---HHHHHHHHTGCSEEEEEGGGHCHHH------HTESEE
T ss_pred             cCCCEEEEECCH-HHHHHHHHHHHHcCCCEEEEEECCHHH---HHHHHHHcCccccceeeHHHHHHHH------hhCCeE
Confidence            358999999998 8999999999999998 4444444432   23333455332  2334444433 2      467999


Q ss_pred             EecCCCchHHHHHHhcccC----cEEEEEe
Q psy2961          85 LNCVGGNSATNLLRTLVSK----GVMVTYG  110 (202)
Q Consensus        85 id~~g~~~~~~~~~~l~~~----G~~v~~g  110 (202)
                      |.|++.+...-.-..+...    +.++.++
T Consensus        80 I~aT~~~~~~i~~~~~~~~~~~~~~v~Dla  109 (135)
T PF01488_consen   80 INATPSGMPIITEEMLKKASKKLRLVIDLA  109 (135)
T ss_dssp             EE-SSTTSTSSTHHHHTTTCHHCSEEEES-
T ss_pred             EEecCCCCcccCHHHHHHHHhhhhceeccc
Confidence            9999876432112223333    5677776

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK07806 short chain dehydrogenase; Provisional

Probab=98.08  E-value=0.00017  Score=53.46  Aligned_cols=102  Identities=14%  Similarity=0.192  Sum_probs=61.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccH-HHHHHHHHhcCCce-Ee--C---hhHHHh-HHHhhC-CCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDI-DKLKSYLKSLGADY-VF--T---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~-~~~~~~~~~lg~~~-v~--~---~~~~~~-~~~~~~-~~~   80 (202)
                      .+.+++|+|++|++|..+++.+...|++|+.+.++.+.. ....+.++..+... .+  |   +++... +.+... ..+
T Consensus         5 ~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   84 (248)
T PRK07806          5 PGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFGG   84 (248)
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence            467999999999999999998888999998887765321 11112233333321 11  3   333333 333221 146


Q ss_pred             CeEEEecCCCch-------------------H-HHHHHhcccCcEEEEEec
Q psy2961          81 PKLALNCVGGNS-------------------A-TNLLRTLVSKGVMVTYGG  111 (202)
Q Consensus        81 ~d~vid~~g~~~-------------------~-~~~~~~l~~~G~~v~~g~  111 (202)
                      +|++|.+.|...                   + ..+.+.+..+|+++.++.
T Consensus        85 ~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS  135 (248)
T PRK07806         85 LDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTS  135 (248)
T ss_pred             CcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeC
Confidence            899998876421                   1 113444555689998875

>PRK08862 short chain dehydrogenase; Provisional

Probab=98.07  E-value=4.4e-05  Score=56.15  Aligned_cols=80  Identities=13%  Similarity=0.174  Sum_probs=54.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceE---eC---hhHHHh-HHHhhCC-C-C
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FT---EEELRN-ISRDASI-P-K   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v---~~---~~~~~~-~~~~~~~-~-~   80 (202)
                      .|.+++|.|+++++|.+++..+...|++|+.+.++.+..++..+.+++.+.+..   .|   +++... +.+.... + .
T Consensus         4 ~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~   83 (227)
T PRK08862          4 KSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQFNRA   83 (227)
T ss_pred             CCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            478999999999999999988888999998888777654333344445554321   12   333433 3332221 3 6


Q ss_pred             CeEEEecCC
Q psy2961          81 PKLALNCVG   89 (202)
Q Consensus        81 ~d~vid~~g   89 (202)
                      +|++|.+.|
T Consensus        84 iD~li~nag   92 (227)
T PRK08862         84 PDVLVNNWT   92 (227)
T ss_pred             CCEEEECCc
Confidence            999999986

>PRK05867 short chain dehydrogenase; Provisional

Probab=98.06  E-value=4.5e-05  Score=56.89  Aligned_cols=81  Identities=17%  Similarity=0.257  Sum_probs=53.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceE---eC---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FT---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v---~~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .|.++||+|+++++|..+++.+...|++|+.+.++.+..++..+.++..+....   .|   +++... +.+... -+++
T Consensus         8 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   87 (253)
T PRK05867          8 HGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELGGI   87 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            478999999999999999999999999998888776543333334444443221   12   333333 332211 1479


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.+.|.
T Consensus        88 d~lv~~ag~   96 (253)
T PRK05867         88 DIAVCNAGI   96 (253)
T ss_pred             CEEEECCCC
Confidence            999998873

>PRK07478 short chain dehydrogenase; Provisional

Probab=98.06  E-value=4.8e-05  Score=56.74  Aligned_cols=81  Identities=22%  Similarity=0.332  Sum_probs=54.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .+.+++|+|+++++|..+++.+...|++|+.++++++..++..+.+++.+.+...   |   +++... +.+... -+.+
T Consensus         5 ~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   84 (254)
T PRK07478          5 NGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERFGGL   84 (254)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence            4679999999999999999999999999999988776433333444444433221   2   233333 333221 1479


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.++|.
T Consensus        85 d~li~~ag~   93 (254)
T PRK07478         85 DIAFNNAGT   93 (254)
T ss_pred             CEEEECCCC
Confidence            999998873

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=98.06  E-value=0.00016  Score=54.18  Aligned_cols=79  Identities=15%  Similarity=0.139  Sum_probs=49.7

Q ss_pred             CCCEEEEeCCC--cHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHH-HhcCCceEe--C---hhHHHh-HHHhhC-CC
Q psy2961          10 PGDVVIQNGAN--SACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGADYVF--T---EEELRN-ISRDAS-IP   79 (202)
Q Consensus        10 ~g~~VlI~g~~--~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~v~--~---~~~~~~-~~~~~~-~~   79 (202)
                      .|.++||+|++  +++|.++++.+...|++|+.+.++.+. .+..+.+ ++++...++  |   .++... +.+... -+
T Consensus         9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   87 (258)
T PRK07533          9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKA-RPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEEWG   87 (258)
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhh-HHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHHcC
Confidence            47899999998  489999999988999998887765432 1122222 334432222  2   333333 333221 14


Q ss_pred             CCeEEEecCC
Q psy2961          80 KPKLALNCVG   89 (202)
Q Consensus        80 ~~d~vid~~g   89 (202)
                      .+|++|.++|
T Consensus        88 ~ld~lv~nAg   97 (258)
T PRK07533         88 RLDFLLHSIA   97 (258)
T ss_pred             CCCEEEEcCc
Confidence            6999999886

>PRK08265 short chain dehydrogenase; Provisional

Probab=98.06  E-value=0.00011  Score=55.17  Aligned_cols=78  Identities=15%  Similarity=0.243  Sum_probs=51.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCc--eE-eC---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD--YV-FT---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~--~v-~~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .+.+++|+|+++++|..+++.+...|++|+.+.++.+..   .+..++++..  .+ .|   +++... +..... -+.+
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i   81 (261)
T PRK08265          5 AGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNG---AAVAASLGERARFIATDITDDAAIERAVATVVARFGRV   81 (261)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH---HHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence            468999999999999999999999999999888776531   2233444432  11 12   333333 332211 1468


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.+.|.
T Consensus        82 d~lv~~ag~   90 (261)
T PRK08265         82 DILVNLACT   90 (261)
T ss_pred             CEEEECCCC
Confidence            999998873

>PRK05866 short chain dehydrogenase; Provisional

Probab=98.06  E-value=4.8e-05  Score=58.13  Aligned_cols=81  Identities=17%  Similarity=0.311  Sum_probs=53.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCce-Ee--C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-VF--T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-v~--~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .+.+++|+|++|++|..+++.+...|++|+.+.++.+..++..+.+.+.+... ++  |   .++... +..... -+++
T Consensus        39 ~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~i  118 (293)
T PRK05866         39 TGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRIGGV  118 (293)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            35789999999999999999888899999999888764333333344444332 11  2   333333 332211 1478


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.++|.
T Consensus       119 d~li~~AG~  127 (293)
T PRK05866        119 DILINNAGR  127 (293)
T ss_pred             CEEEECCCC
Confidence            999999874

>PRK07832 short chain dehydrogenase; Provisional

Probab=98.05  E-value=0.00012  Score=55.29  Aligned_cols=78  Identities=14%  Similarity=0.132  Sum_probs=49.9

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceE----eC---hhHHHh-HHHhhC-CCCCeE
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV----FT---EEELRN-ISRDAS-IPKPKL   83 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v----~~---~~~~~~-~~~~~~-~~~~d~   83 (202)
                      +++|+|++|++|..+++.+...|++|+.+.++++..++..+.++..+...+    .|   .++... +.+... ..++|+
T Consensus         2 ~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~   81 (272)
T PRK07832          2 RCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSMDV   81 (272)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCCCE
Confidence            689999999999999999889999988877665532222333344444321    23   233333 222211 246899


Q ss_pred             EEecCCC
Q psy2961          84 ALNCVGG   90 (202)
Q Consensus        84 vid~~g~   90 (202)
                      +|.+.|.
T Consensus        82 lv~~ag~   88 (272)
T PRK07832         82 VMNIAGI   88 (272)
T ss_pred             EEECCCC
Confidence            9999974

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=98.04  E-value=0.00018  Score=54.52  Aligned_cols=80  Identities=16%  Similarity=0.216  Sum_probs=51.3

Q ss_pred             CCCEEEEeCCC--cHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHH-HhcCCceEe--C---hhHHHh-HHHhhC-CC
Q psy2961          10 PGDVVIQNGAN--SACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGADYVF--T---EEELRN-ISRDAS-IP   79 (202)
Q Consensus        10 ~g~~VlI~g~~--~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~v~--~---~~~~~~-~~~~~~-~~   79 (202)
                      .|++++|+|++  +++|.++++.+...|++|+.+.++.+ ..++.+.+ ++++....+  |   .++... +.+... .+
T Consensus         4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~-~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~i~~~~g   82 (274)
T PRK08415          4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEA-LKKRVEPIAQELGSDYVYELDVSKPEHFKSLAESLKKDLG   82 (274)
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHH-HHHHHHHHHHhcCCceEEEecCCCHHHHHHHHHHHHHHcC
Confidence            47899999996  79999999999899999888766532 12233333 445543222  3   333333 333322 25


Q ss_pred             CCeEEEecCCC
Q psy2961          80 KPKLALNCVGG   90 (202)
Q Consensus        80 ~~d~vid~~g~   90 (202)
                      .+|++|+++|.
T Consensus        83 ~iDilVnnAG~   93 (274)
T PRK08415         83 KIDFIVHSVAF   93 (274)
T ss_pred             CCCEEEECCcc
Confidence            79999999873

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=98.03  E-value=6.2e-05  Score=55.91  Aligned_cols=80  Identities=18%  Similarity=0.251  Sum_probs=53.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceE---eC---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FT---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v---~~---~~~~~~-~~~~~~-~~~~   81 (202)
                      ++.++||+|++|++|..+++.+...|++|+.+.++++...+..+.++..+....   .|   .....+ +..... ..++
T Consensus         4 ~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   83 (253)
T PRK08217          4 KDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFGQL   83 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            478999999999999999999999999988888776543333333444454321   12   233333 333221 1468


Q ss_pred             eEEEecCC
Q psy2961          82 KLALNCVG   89 (202)
Q Consensus        82 d~vid~~g   89 (202)
                      |++|.++|
T Consensus        84 d~vi~~ag   91 (253)
T PRK08217         84 NGLINNAG   91 (253)
T ss_pred             CEEEECCC
Confidence            99999887

>PRK12828 short chain dehydrogenase; Provisional

Probab=98.02  E-value=6.4e-05  Score=55.28  Aligned_cols=81  Identities=14%  Similarity=0.106  Sum_probs=53.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe----ChhHHHh-HHHhhC-CCCCeE
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF----TEEELRN-ISRDAS-IPKPKL   83 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~----~~~~~~~-~~~~~~-~~~~d~   83 (202)
                      ++.++||+|++|++|..+++.+...|++|+.+.++.+...+..+.+...+...+.    +.+++.. +.+... -+++|+
T Consensus         6 ~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~   85 (239)
T PRK12828          6 QGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDLVDPQAARRAVDEVNRQFGRLDA   85 (239)
T ss_pred             CCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeecCCHHHHHHHHHHHHHHhCCcCE
Confidence            3789999999999999999999888999999988765433333334444443322    2333333 332211 147899


Q ss_pred             EEecCCC
Q psy2961          84 ALNCVGG   90 (202)
Q Consensus        84 vid~~g~   90 (202)
                      +|.+.|.
T Consensus        86 vi~~ag~   92 (239)
T PRK12828         86 LVNIAGA   92 (239)
T ss_pred             EEECCcc
Confidence            9998874

>PRK06128 oxidoreductase; Provisional

Probab=98.02  E-value=0.00018  Score=55.13  Aligned_cols=81  Identities=16%  Similarity=0.194  Sum_probs=50.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCccc--HHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD--IDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IP   79 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~--~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~   79 (202)
                      .|.++||+|+++++|..+++.+...|++|+.+..+.+.  ..+..+.++..+.....   |   .++..+ +.+... -+
T Consensus        54 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  133 (300)
T PRK06128         54 QGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKELG  133 (300)
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHHhC
Confidence            36799999999999999999888899998877654431  11122334444543221   2   233333 332211 14


Q ss_pred             CCeEEEecCCC
Q psy2961          80 KPKLALNCVGG   90 (202)
Q Consensus        80 ~~d~vid~~g~   90 (202)
                      ++|++|.++|.
T Consensus       134 ~iD~lV~nAg~  144 (300)
T PRK06128        134 GLDILVNIAGK  144 (300)
T ss_pred             CCCEEEECCcc
Confidence            69999998873

>PRK05872 short chain dehydrogenase; Provisional

Probab=97.98  E-value=4.7e-05  Score=58.27  Aligned_cols=78  Identities=14%  Similarity=0.199  Sum_probs=52.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCC--ceE---eC---hhHHHh-HHHhhC-CC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA--DYV---FT---EEELRN-ISRDAS-IP   79 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~--~~v---~~---~~~~~~-~~~~~~-~~   79 (202)
                      .|.++||+|+++++|..+++.+...|++|+.+.++.+..   .+..++++.  ...   .|   .++... +.+... .+
T Consensus         8 ~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l---~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   84 (296)
T PRK05872          8 AGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAEL---AALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFG   84 (296)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHH---HHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            578999999999999999999999999998888776532   223344432  111   22   333333 333221 14


Q ss_pred             CCeEEEecCCC
Q psy2961          80 KPKLALNCVGG   90 (202)
Q Consensus        80 ~~d~vid~~g~   90 (202)
                      ++|++|+++|.
T Consensus        85 ~id~vI~nAG~   95 (296)
T PRK05872         85 GIDVVVANAGI   95 (296)
T ss_pred             CCCEEEECCCc
Confidence            69999999984

>PRK07814 short chain dehydrogenase; Provisional

Probab=97.98  E-value=8.2e-05  Score=55.84  Aligned_cols=81  Identities=17%  Similarity=0.294  Sum_probs=52.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCce-E--eC---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-V--FT---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-v--~~---~~~~~~-~~~~~~-~~~~   81 (202)
                      ++.++||+|++|++|..+++.+...|++|+.+.++++..++..+.++..+... +  .|   ++.... +.+... -+++
T Consensus         9 ~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   88 (263)
T PRK07814          9 DDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAFGRL   88 (263)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            57899999999999999999999999999988887654322223333333321 1  13   233332 222211 1479


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|+++|.
T Consensus        89 d~vi~~Ag~   97 (263)
T PRK07814         89 DIVVNNVGG   97 (263)
T ss_pred             CEEEECCCC
Confidence            999998873

>PRK07831 short chain dehydrogenase; Provisional

Probab=97.97  E-value=9.1e-05  Score=55.52  Aligned_cols=83  Identities=19%  Similarity=0.223  Sum_probs=53.6

Q ss_pred             CCCCCEEEEeCCCc-HHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHh-cCCceEe----C---hhHHHh-HHHhhC
Q psy2961           8 LSPGDVVIQNGANS-ACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS-LGADYVF----T---EEELRN-ISRDAS   77 (202)
Q Consensus         8 ~~~g~~VlI~g~~~-~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~-lg~~~v~----~---~~~~~~-~~~~~~   77 (202)
                      +..+.+++|+|++| ++|.++++.+...|++|+.+.++++..++..+.+++ ++...+.    |   +++... +.....
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~   93 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVE   93 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence            44678999999974 899999999999999988877766543333333433 4433221    3   233333 332211


Q ss_pred             -CCCCeEEEecCCC
Q psy2961          78 -IPKPKLALNCVGG   90 (202)
Q Consensus        78 -~~~~d~vid~~g~   90 (202)
                       .+++|++|.++|.
T Consensus        94 ~~g~id~li~~ag~  107 (262)
T PRK07831         94 RLGRLDVLVNNAGL  107 (262)
T ss_pred             HcCCCCEEEECCCC
Confidence             2478999999984

>PRK05876 short chain dehydrogenase; Provisional

Probab=97.97  E-value=8.4e-05  Score=56.28  Aligned_cols=81  Identities=15%  Similarity=0.174  Sum_probs=52.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceE-e--C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-F--T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v-~--~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .|.+++|+|+++++|.++++.+...|++|+.+.++.+..++..+.++..+.... +  |   .++... +.+... .+++
T Consensus         5 ~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   84 (275)
T PRK05876          5 PGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLLGHV   84 (275)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence            478999999999999999999999999988887776543333333344443321 1  2   333333 332211 2468


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.+.|.
T Consensus        85 d~li~nAg~   93 (275)
T PRK05876         85 DVVFSNAGI   93 (275)
T ss_pred             CEEEECCCc
Confidence            999998873

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.96  E-value=0.00032  Score=52.58  Aligned_cols=79  Identities=14%  Similarity=0.201  Sum_probs=49.0

Q ss_pred             CCCEEEEeCCC--cHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHH-Hhc-CCce-Ee--C---hhHHHh-HHHhhC-
Q psy2961          10 PGDVVIQNGAN--SACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSL-GADY-VF--T---EEELRN-ISRDAS-   77 (202)
Q Consensus        10 ~g~~VlI~g~~--~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~-~~l-g~~~-v~--~---~~~~~~-~~~~~~-   77 (202)
                      .|.+++|+|++  +++|.++++.+...|++|+.+.++... .++.+.+ .++ +... .+  |   +++... +.+... 
T Consensus         6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~   84 (257)
T PRK08594          6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERL-EKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEE   84 (257)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccc-hHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHh
Confidence            47899999997  799999999888999998887654321 1123333 333 2211 11  2   334443 333322 


Q ss_pred             CCCCeEEEecCC
Q psy2961          78 IPKPKLALNCVG   89 (202)
Q Consensus        78 ~~~~d~vid~~g   89 (202)
                      -+.+|+++.++|
T Consensus        85 ~g~ld~lv~nag   96 (257)
T PRK08594         85 VGVIHGVAHCIA   96 (257)
T ss_pred             CCCccEEEECcc
Confidence            156999999876

>PRK06949 short chain dehydrogenase; Provisional

Probab=97.94  E-value=0.00011  Score=54.79  Aligned_cols=82  Identities=18%  Similarity=0.299  Sum_probs=53.0

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCc-eEe--C---hhHHHh-HHHhh-CCCC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD-YVF--T---EEELRN-ISRDA-SIPK   80 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~-~v~--~---~~~~~~-~~~~~-~~~~   80 (202)
                      ..+.+|+|+|++|++|..+++.+...|++|+.+.++++..++..+.++..+.. .++  |   .+++.. +.+.. ..++
T Consensus         7 ~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   86 (258)
T PRK06949          7 LEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEAGT   86 (258)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            45799999999999999999999999999999888766422222223222221 122  2   233333 33221 1247


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|++|.+.|.
T Consensus        87 ~d~li~~ag~   96 (258)
T PRK06949         87 IDILVNNSGV   96 (258)
T ss_pred             CCEEEECCCC
Confidence            8999999883

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=97.94  E-value=3.2e-05  Score=55.95  Aligned_cols=102  Identities=20%  Similarity=0.232  Sum_probs=63.4

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCC--cEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHh-HHHhhCCC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGL--KTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRN-ISRDASIP   79 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~--~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~-~~~~~~~~   79 (202)
                      +...++||++||-.|+|  .|+.++-+++..|.  +|+++-..++-.+...+.++.++.+.|. ...|... ...   ..
T Consensus        66 ~~L~l~pg~~VLeIGtG--sGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~---~a  140 (209)
T PF01135_consen   66 EALDLKPGDRVLEIGTG--SGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPE---EA  140 (209)
T ss_dssp             HHTTC-TT-EEEEES-T--TSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGG---G-
T ss_pred             HHHhcCCCCEEEEecCC--CcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcccc---CC
Confidence            44568999999999997  47888888888775  4666655554323334555666765332 1122222 211   25


Q ss_pred             CCeEEEecCCCchHHH-HHHhcccCcEEEEEe
Q psy2961          80 KPKLALNCVGGNSATN-LLRTLVSKGVMVTYG  110 (202)
Q Consensus        80 ~~d~vid~~g~~~~~~-~~~~l~~~G~~v~~g  110 (202)
                      +||.|+-+.+-+.... .++.|++||++|..-
T Consensus       141 pfD~I~v~~a~~~ip~~l~~qL~~gGrLV~pi  172 (209)
T PF01135_consen  141 PFDRIIVTAAVPEIPEALLEQLKPGGRLVAPI  172 (209)
T ss_dssp             SEEEEEESSBBSS--HHHHHTEEEEEEEEEEE
T ss_pred             CcCEEEEeeccchHHHHHHHhcCCCcEEEEEE
Confidence            7999998888776654 789999999999854

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=97.93  E-value=8.4e-05  Score=51.64  Aligned_cols=79  Identities=22%  Similarity=0.325  Sum_probs=48.9

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCc---ccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhh-CCCC
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNR---DDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDA-SIPK   80 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~---~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~-~~~~   80 (202)
                      ++|+|+|+++++|..+++.+...|+.+++.+++.   +...+..+.++..+....+   |   .++... +.+.. ....
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGP   80 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4799999999999998888887787655555544   3222233444555543222   2   334444 33332 2357


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|++|.+.|.
T Consensus        81 ld~li~~ag~   90 (167)
T PF00106_consen   81 LDILINNAGI   90 (167)
T ss_dssp             ESEEEEECSC
T ss_pred             cccccccccc
Confidence            9999999884

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK12747 short chain dehydrogenase; Provisional

Probab=97.93  E-value=0.00035  Score=52.01  Aligned_cols=105  Identities=13%  Similarity=0.153  Sum_probs=62.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEec-CcccHHHHHHHHHhcCCceE-e--C---hhHHHh-HHHh------
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVR-NRDDIDKLKSYLKSLGADYV-F--T---EEELRN-ISRD------   75 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~-~~~~~~~~~~~~~~lg~~~v-~--~---~~~~~~-~~~~------   75 (202)
                      .+.+++|+|+++++|.++++.+...|++|+.+.+ +.+...+....++..+.... +  |   .++... +.+.      
T Consensus         3 ~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (252)
T PRK12747          3 KGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQN   82 (252)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHHHHHHhhh
Confidence            4689999999999999999999999999877653 33322222233333333211 1  2   222222 2221      


Q ss_pred             -hCCCCCeEEEecCCCch-----------H---------------HHHHHhcccCcEEEEEeccCC
Q psy2961          76 -ASIPKPKLALNCVGGNS-----------A---------------TNLLRTLVSKGVMVTYGGMSR  114 (202)
Q Consensus        76 -~~~~~~d~vid~~g~~~-----------~---------------~~~~~~l~~~G~~v~~g~~~~  114 (202)
                       .+..++|++|.++|...           +               ..+++.++..|+++.++....
T Consensus        83 ~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~~  148 (252)
T PRK12747         83 RTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAAT  148 (252)
T ss_pred             hcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCccc
Confidence             11237999999887310           0               013445566799999886554

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=97.92  E-value=0.00012  Score=54.60  Aligned_cols=81  Identities=17%  Similarity=0.193  Sum_probs=53.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceE-e--C---hhHHHh-HHHhh-CCCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-F--T---EEELRN-ISRDA-SIPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v-~--~---~~~~~~-~~~~~-~~~~~   81 (202)
                      .|.+|||+|+++++|..+++.+...|++|+.+.+++++..+..+.+++.|.... +  |   +++... +.... ..+++
T Consensus         9 ~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   88 (255)
T PRK07523          9 TGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEIGPI   88 (255)
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence            478999999999999999998888999998887776543333334444443221 1  2   333333 33221 12568


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.++|.
T Consensus        89 d~li~~ag~   97 (255)
T PRK07523         89 DILVNNAGM   97 (255)
T ss_pred             CEEEECCCC
Confidence            999999874

>PRK07791 short chain dehydrogenase; Provisional

Probab=97.92  E-value=0.00014  Score=55.32  Aligned_cols=82  Identities=16%  Similarity=0.123  Sum_probs=52.5

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCc---------ccHHHHHHHHHhcCCceEe---C---hhHHHh-H
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR---------DDIDKLKSYLKSLGADYVF---T---EEELRN-I   72 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~---------~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~   72 (202)
                      -.|.++||+|+++++|.++++.+...|++|+.+.++.         +...+..+.+++.+.....   |   .++... +
T Consensus         4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~   83 (286)
T PRK07791          4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLV   83 (286)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHH
Confidence            4678999999999999999998888999988876554         3222222333333433211   2   334443 3


Q ss_pred             HHhhC-CCCCeEEEecCCC
Q psy2961          73 SRDAS-IPKPKLALNCVGG   90 (202)
Q Consensus        73 ~~~~~-~~~~d~vid~~g~   90 (202)
                      .+... -+.+|++|.++|.
T Consensus        84 ~~~~~~~g~id~lv~nAG~  102 (286)
T PRK07791         84 DAAVETFGGLDVLVNNAGI  102 (286)
T ss_pred             HHHHHhcCCCCEEEECCCC
Confidence            33222 1569999998874

>PRK06172 short chain dehydrogenase; Provisional

Probab=97.92  E-value=0.00013  Score=54.37  Aligned_cols=81  Identities=15%  Similarity=0.259  Sum_probs=53.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCce-Ee--C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-VF--T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-v~--~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .+.+++|.|++|++|..+++.+...|++|+.+.++++...+..+.+++.+... .+  |   ..+... +.+... .+++
T Consensus         6 ~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~i   85 (253)
T PRK06172          6 SGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAYGRL   85 (253)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence            46899999999999999998888899999999888764333344444444332 11  2   233333 222211 1468


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.+.|.
T Consensus        86 d~li~~ag~   94 (253)
T PRK06172         86 DYAFNNAGI   94 (253)
T ss_pred             CEEEECCCC
Confidence            999998874

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.92  E-value=0.00027  Score=52.80  Aligned_cols=76  Identities=14%  Similarity=0.217  Sum_probs=48.7

Q ss_pred             CCCEEEEeCCC--cHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCce--Ee--C---hhHHHh-HHHhhC-C
Q psy2961          10 PGDVVIQNGAN--SACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY--VF--T---EEELRN-ISRDAS-I   78 (202)
Q Consensus        10 ~g~~VlI~g~~--~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~--v~--~---~~~~~~-~~~~~~-~   78 (202)
                      .|++++|+|++  +++|.++++.+...|++|+.+.+++ .   ..+.++++....  .+  |   +++... +.+... -
T Consensus         6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~-~---~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   81 (252)
T PRK06079          6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND-R---MKKSLQKLVDEEDLLVECDVASDESIERAFATIKERV   81 (252)
T ss_pred             CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch-H---HHHHHHhhccCceeEEeCCCCCHHHHHHHHHHHHHHh
Confidence            57899999998  7999999998888999998887653 2   223333332111  11  2   333333 333221 1


Q ss_pred             CCCeEEEecCC
Q psy2961          79 PKPKLALNCVG   89 (202)
Q Consensus        79 ~~~d~vid~~g   89 (202)
                      +.+|++|.++|
T Consensus        82 g~iD~lv~nAg   92 (252)
T PRK06079         82 GKIDGIVHAIA   92 (252)
T ss_pred             CCCCEEEEccc
Confidence            46999999887

>PRK07576 short chain dehydrogenase; Provisional

Probab=97.92  E-value=0.00013  Score=54.88  Aligned_cols=80  Identities=14%  Similarity=0.170  Sum_probs=52.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceE---eC---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FT---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v---~~---~~~~~~-~~~~~~-~~~~   81 (202)
                      ++.+++|+|+++++|..+++.+...|++|+.+.++++...+..+.+...+....   +|   +.+... +.+... .+++
T Consensus         8 ~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~~i   87 (264)
T PRK07576          8 AGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFGPI   87 (264)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            578999999999999999999999999999988776543222233333333211   12   333333 333221 2468


Q ss_pred             eEEEecCC
Q psy2961          82 KLALNCVG   89 (202)
Q Consensus        82 d~vid~~g   89 (202)
                      |++|.+.|
T Consensus        88 D~vi~~ag   95 (264)
T PRK07576         88 DVLVSGAA   95 (264)
T ss_pred             CEEEECCC
Confidence            99998876

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.91  E-value=0.00038  Score=56.50  Aligned_cols=81  Identities=12%  Similarity=0.159  Sum_probs=52.6

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-C---hhHHHh-HHHhhC-CCCCe
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-T---EEELRN-ISRDAS-IPKPK   82 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~---~~~~~~-~~~~~~-~~~~d   82 (202)
                      .+|.++||+|+++++|..+++.+...|++|+.+.++... ++..+...+++...+. |   +.+... +..... .+++|
T Consensus       208 ~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~-~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id  286 (450)
T PRK08261        208 LAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAG-EALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGLD  286 (450)
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccH-HHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCCCC
Confidence            368899999999999999999999999998887764321 1122333445544332 3   233333 322211 24699


Q ss_pred             EEEecCCC
Q psy2961          83 LALNCVGG   90 (202)
Q Consensus        83 ~vid~~g~   90 (202)
                      ++|.++|.
T Consensus       287 ~vi~~AG~  294 (450)
T PRK08261        287 IVVHNAGI  294 (450)
T ss_pred             EEEECCCc
Confidence            99999883

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=97.91  E-value=4.1e-05  Score=57.37  Aligned_cols=102  Identities=15%  Similarity=0.235  Sum_probs=73.5

Q ss_pred             ccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCc-e--E-e-ChhHHHhHHHhhC
Q psy2961           3 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD-Y--V-F-TEEELRNISRDAS   77 (202)
Q Consensus         3 ~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~-~--v-~-~~~~~~~~~~~~~   77 (202)
                      .+..+++||++||=+|+|  -|.+++..|+..|++|++++-++++.+...+.+++.|.. .  + + |+.++.       
T Consensus        65 ~~kl~L~~G~~lLDiGCG--WG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~-------  135 (283)
T COG2230          65 LEKLGLKPGMTLLDIGCG--WGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE-------  135 (283)
T ss_pred             HHhcCCCCCCEEEEeCCC--hhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc-------
Confidence            456789999999999997  799999999999999999999998766556666677765 1  1 1 344432       


Q ss_pred             CCCCeEEE-----ecCCCch----HHHHHHhcccCcEEEEEeccCC
Q psy2961          78 IPKPKLAL-----NCVGGNS----ATNLLRTLVSKGVMVTYGGMSR  114 (202)
Q Consensus        78 ~~~~d~vi-----d~~g~~~----~~~~~~~l~~~G~~v~~g~~~~  114 (202)
                       ..||-|+     +-+|...    +..+-++|+++|++++......
T Consensus       136 -e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~  180 (283)
T COG2230         136 -EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGP  180 (283)
T ss_pred             -cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCC
Confidence             2367664     3344432    2336789999999998764443

>PRK08589 short chain dehydrogenase; Validated

Probab=97.91  E-value=0.00015  Score=54.80  Aligned_cols=80  Identities=16%  Similarity=0.215  Sum_probs=52.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceE---eC---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FT---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v---~~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .|.++||+|+++++|.++++.+...|++|+.+.++ +...+..+.+++.+....   .|   +.+... +.+... -+.+
T Consensus         5 ~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i   83 (272)
T PRK08589          5 ENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQFGRV   83 (272)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHcCCc
Confidence            47899999999999999999888899999998877 433333344444443211   12   233333 333221 1468


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.++|.
T Consensus        84 d~li~~Ag~   92 (272)
T PRK08589         84 DVLFNNAGV   92 (272)
T ss_pred             CEEEECCCC
Confidence            999998863

>PRK09291 short chain dehydrogenase; Provisional

Probab=97.90  E-value=5.8e-05  Score=56.32  Aligned_cols=79  Identities=18%  Similarity=0.158  Sum_probs=51.7

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---ChhHHHhHHHhhCCCCCeEEEec
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TEEELRNISRDASIPKPKLALNC   87 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~~~~~~~~~~~~~~~~~d~vid~   87 (202)
                      +.++||+|++|++|..+++.+...|++|++++++++...+..+..+..+....+   |-.+...+..... .++|++|.+
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-~~id~vi~~   80 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAE-WDVDVLLNN   80 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhc-CCCCEEEEC
Confidence            468999999999999999999999999999888765322222333333332111   3223222333322 479999999


Q ss_pred             CCC
Q psy2961          88 VGG   90 (202)
Q Consensus        88 ~g~   90 (202)
                      .|.
T Consensus        81 ag~   83 (257)
T PRK09291         81 AGI   83 (257)
T ss_pred             CCc
Confidence            873

>PRK07062 short chain dehydrogenase; Provisional

Probab=97.90  E-value=0.00012  Score=54.94  Aligned_cols=81  Identities=14%  Similarity=0.208  Sum_probs=53.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhc-CCceE--e--C---hhHHHh-HHHhhC-CC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL-GADYV--F--T---EEELRN-ISRDAS-IP   79 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~l-g~~~v--~--~---~~~~~~-~~~~~~-~~   79 (202)
                      .|.+++|.|+++++|.++++.+...|++|+.+.++++...+..+.+.+. +...+  +  |   .++... +.+... -+
T Consensus         7 ~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   86 (265)
T PRK07062          7 EGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARFG   86 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence            4789999999999999999999999999998888776433323333332 21111  1  2   333333 333221 14


Q ss_pred             CCeEEEecCCC
Q psy2961          80 KPKLALNCVGG   90 (202)
Q Consensus        80 ~~d~vid~~g~   90 (202)
                      ++|++|.++|.
T Consensus        87 ~id~li~~Ag~   97 (265)
T PRK07062         87 GVDMLVNNAGQ   97 (265)
T ss_pred             CCCEEEECCCC
Confidence            69999999974

>PRK06181 short chain dehydrogenase; Provisional

Probab=97.90  E-value=0.00014  Score=54.50  Aligned_cols=80  Identities=21%  Similarity=0.277  Sum_probs=52.3

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCCCe
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPKPK   82 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~~d   82 (202)
                      +.+|||.|++|++|..+++.+...|++|+.+.++++..++..+.++..+....+   |   ...+.. +.+... .+++|
T Consensus         1 ~~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id   80 (263)
T PRK06181          1 GKVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGID   80 (263)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            357999999999999999999999999999888765433333334444443221   2   233333 332211 14689


Q ss_pred             EEEecCCC
Q psy2961          83 LALNCVGG   90 (202)
Q Consensus        83 ~vid~~g~   90 (202)
                      ++|.++|.
T Consensus        81 ~vi~~ag~   88 (263)
T PRK06181         81 ILVNNAGI   88 (263)
T ss_pred             EEEECCCc
Confidence            99999874

>PRK07677 short chain dehydrogenase; Provisional

Probab=97.90  E-value=0.00014  Score=54.19  Aligned_cols=80  Identities=15%  Similarity=0.263  Sum_probs=51.6

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCce-Ee--C---hhHHHh-HHHhhC-CCCCe
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-VF--T---EEELRN-ISRDAS-IPKPK   82 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-v~--~---~~~~~~-~~~~~~-~~~~d   82 (202)
                      |.+++|.|+++++|..+++.+...|++|+.+.++.+...+..+.+++.+... .+  |   +++... +.+... .+++|
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   80 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRID   80 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCcc
Confidence            5789999999999999999999999999888877654322233333333221 12  2   233333 332211 14689


Q ss_pred             EEEecCCC
Q psy2961          83 LALNCVGG   90 (202)
Q Consensus        83 ~vid~~g~   90 (202)
                      ++|.+.|.
T Consensus        81 ~lI~~ag~   88 (252)
T PRK07677         81 ALINNAAG   88 (252)
T ss_pred             EEEECCCC
Confidence            99998873

>PRK06194 hypothetical protein; Provisional

Probab=97.90  E-value=0.00015  Score=55.08  Aligned_cols=81  Identities=21%  Similarity=0.319  Sum_probs=51.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceE-e--C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-F--T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v-~--~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .+.++||+|++|++|..+++.+...|++|+.+.++.+...+..+.+...+.... +  |   ++++.. +..... .+++
T Consensus         5 ~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~i   84 (287)
T PRK06194          5 AGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFGAV   84 (287)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            357899999999999999998888999998887765432222233333343321 1  2   333333 322211 2468


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.++|.
T Consensus        85 d~vi~~Ag~   93 (287)
T PRK06194         85 HLLFNNAGV   93 (287)
T ss_pred             CEEEECCCC
Confidence            999999874

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.90  E-value=0.00013  Score=55.18  Aligned_cols=79  Identities=15%  Similarity=0.169  Sum_probs=51.1

Q ss_pred             CCCEEEEeCCCc--HHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHH-HhcCCceEe--C---hhHHHh-HHHhhC-CC
Q psy2961          10 PGDVVIQNGANS--ACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGADYVF--T---EEELRN-ISRDAS-IP   79 (202)
Q Consensus        10 ~g~~VlI~g~~~--~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~v~--~---~~~~~~-~~~~~~-~~   79 (202)
                      .|.++||+|+++  ++|.++++.+...|++|+.+.++++. .++.+.+ +++|....+  |   .++... +.+... -+
T Consensus         6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~-~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~~~~g   84 (271)
T PRK06505          6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEAL-GKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALEKKWG   84 (271)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHH-HHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHHHHhC
Confidence            578999999996  99999999999999998887665321 1222333 344543222  2   334433 333322 14


Q ss_pred             CCeEEEecCC
Q psy2961          80 KPKLALNCVG   89 (202)
Q Consensus        80 ~~d~vid~~g   89 (202)
                      .+|++|+++|
T Consensus        85 ~iD~lVnnAG   94 (271)
T PRK06505         85 KLDFVVHAIG   94 (271)
T ss_pred             CCCEEEECCc
Confidence            7999999887

>PRK07890 short chain dehydrogenase; Provisional

Probab=97.89  E-value=0.00013  Score=54.36  Aligned_cols=82  Identities=18%  Similarity=0.264  Sum_probs=52.6

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCce--E-eC---hhHHHh-HHHhhC-CCC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY--V-FT---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~--v-~~---~~~~~~-~~~~~~-~~~   80 (202)
                      -++.+|+|.|+++++|..+++.+...|++|+.+.++++..++..+.++..+...  + .|   .+++.. +.+... -++
T Consensus         3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   82 (258)
T PRK07890          3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERFGR   82 (258)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHcCC
Confidence            357899999999999999999999999999988877654322223333333321  1 12   233333 333211 146


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|++|.+.|.
T Consensus        83 ~d~vi~~ag~   92 (258)
T PRK07890         83 VDALVNNAFR   92 (258)
T ss_pred             ccEEEECCcc
Confidence            8999998874

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=97.89  E-value=0.00013  Score=54.60  Aligned_cols=78  Identities=19%  Similarity=0.280  Sum_probs=51.1

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe--C---hhHHHh-HHHhhC-CCCCeEEE
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--T---EEELRN-ISRDAS-IPKPKLAL   85 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~--~---~~~~~~-~~~~~~-~~~~d~vi   85 (202)
                      ++||+|+++++|..+++.+...|++|+.+.++++..++..+.+++.+....+  |   +++... +.+... -+++|++|
T Consensus         2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~li   81 (259)
T PRK08340          2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGGIDALV   81 (259)
T ss_pred             eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence            6899999999999999999889999988887765433333333333322222  2   334444 333221 24699999


Q ss_pred             ecCCC
Q psy2961          86 NCVGG   90 (202)
Q Consensus        86 d~~g~   90 (202)
                      .+.|.
T Consensus        82 ~naG~   86 (259)
T PRK08340         82 WNAGN   86 (259)
T ss_pred             ECCCC
Confidence            98874

>PRK06483 dihydromonapterin reductase; Provisional

Probab=97.89  E-value=0.00017  Score=53.15  Aligned_cols=77  Identities=13%  Similarity=0.078  Sum_probs=52.4

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-C---hhHHHh-HHHhhC-CCCCeEE
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-T---EEELRN-ISRDAS-IPKPKLA   84 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~---~~~~~~-~~~~~~-~~~~d~v   84 (202)
                      +.++||.|+++++|..+++.+...|++|+.+.++++.   ..+.++..+...+. |   .++... +.+... -+++|++
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~---~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~l   78 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYP---AIDGLRQAGAQCIQADFSTNAGIMAFIDELKQHTDGLRAI   78 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchh---HHHHHHHcCCEEEEcCCCCHHHHHHHHHHHHhhCCCccEE
Confidence            4689999999999999999988999999998877653   23444555543322 2   333333 333322 1468999


Q ss_pred             EecCCC
Q psy2961          85 LNCVGG   90 (202)
Q Consensus        85 id~~g~   90 (202)
                      |.+.|.
T Consensus        79 v~~ag~   84 (236)
T PRK06483         79 IHNASD   84 (236)
T ss_pred             EECCcc
Confidence            998874

>PRK08303 short chain dehydrogenase; Provisional

Probab=97.88  E-value=0.00018  Score=55.32  Aligned_cols=80  Identities=18%  Similarity=0.284  Sum_probs=51.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCc----------ccHHHHHHHHHhcCCceE-e--C---hhHHHh-H
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR----------DDIDKLKSYLKSLGADYV-F--T---EEELRN-I   72 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~----------~~~~~~~~~~~~lg~~~v-~--~---~~~~~~-~   72 (202)
                      .|.+++|+|+++++|.++++.+...|++|+.+.++.          +..++..+.++..|...+ +  |   +++... +
T Consensus         7 ~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~   86 (305)
T PRK08303          7 RGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRALV   86 (305)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHH
Confidence            478999999999999999999999999998887763          222222233444443321 1  2   344443 3


Q ss_pred             HHhhC-CCCCeEEEecC-C
Q psy2961          73 SRDAS-IPKPKLALNCV-G   89 (202)
Q Consensus        73 ~~~~~-~~~~d~vid~~-g   89 (202)
                      .+... -+.+|++|+++ |
T Consensus        87 ~~~~~~~g~iDilVnnA~g  105 (305)
T PRK08303         87 ERIDREQGRLDILVNDIWG  105 (305)
T ss_pred             HHHHHHcCCccEEEECCcc
Confidence            33222 14699999988 5

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=97.88  E-value=0.00017  Score=53.72  Aligned_cols=81  Identities=15%  Similarity=0.148  Sum_probs=52.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceE-e--C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-F--T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v-~--~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .+.++||+|+++++|..+++.+...|++++.+.++++...+..+.++..+.... +  |   +++... +..... .+++
T Consensus         8 ~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   87 (254)
T PRK08085          8 AGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDIGPI   87 (254)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHhcCCC
Confidence            478999999999999999998888999999888776543222333333333221 1  2   333333 332211 2468


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.+.|.
T Consensus        88 d~vi~~ag~   96 (254)
T PRK08085         88 DVLINNAGI   96 (254)
T ss_pred             CEEEECCCc
Confidence            999999874

>PRK06484 short chain dehydrogenase; Validated

Probab=97.88  E-value=0.00026  Score=58.41  Aligned_cols=102  Identities=20%  Similarity=0.275  Sum_probs=65.8

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHH-HhcCCceE-e--C---hhHHHh-HHHhhC-CC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGADYV-F--T---EEELRN-ISRDAS-IP   79 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~v-~--~---~~~~~~-~~~~~~-~~   79 (202)
                      ..|.++||+|+++++|..+++.+...|++|+.+.++.+.    .+.+ ++++.... +  |   +++... +.+... .+
T Consensus       267 ~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g  342 (520)
T PRK06484        267 ESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEG----AKKLAEALGDEHLSVQADITDEAAVESAFAQIQARWG  342 (520)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHhCCceeEEEccCCCHHHHHHHHHHHHHHcC
Confidence            457899999999999999999999999999988877653    3333 33443321 1  2   333333 333221 14


Q ss_pred             CCeEEEecCCCch---------------------------HHHHHHhcccCcEEEEEeccCC
Q psy2961          80 KPKLALNCVGGNS---------------------------ATNLLRTLVSKGVMVTYGGMSR  114 (202)
Q Consensus        80 ~~d~vid~~g~~~---------------------------~~~~~~~l~~~G~~v~~g~~~~  114 (202)
                      .+|++|.++|...                           ...++..++.+|+++.++...+
T Consensus       343 ~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~  404 (520)
T PRK06484        343 RLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIAS  404 (520)
T ss_pred             CCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhh
Confidence            6999999887420                           0112344566799999876544

>PRK05854 short chain dehydrogenase; Provisional

Probab=97.87  E-value=0.00015  Score=55.96  Aligned_cols=80  Identities=18%  Similarity=0.144  Sum_probs=52.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhc-C-Cc-eEe--C---hhHHHh-HHHhhC-CC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL-G-AD-YVF--T---EEELRN-ISRDAS-IP   79 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~l-g-~~-~v~--~---~~~~~~-~~~~~~-~~   79 (202)
                      .|.+++|+|+++++|..+++.+...|++|+.++++.+...+..+.+.+. + .. .++  |   .++... +.+... .+
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~~   92 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEGR   92 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhCC
Confidence            4789999999999999999988889999999998876433333333332 1 11 111  3   233333 322221 25


Q ss_pred             CCeEEEecCC
Q psy2961          80 KPKLALNCVG   89 (202)
Q Consensus        80 ~~d~vid~~g   89 (202)
                      .+|++|.++|
T Consensus        93 ~iD~li~nAG  102 (313)
T PRK05854         93 PIHLLINNAG  102 (313)
T ss_pred             CccEEEECCc
Confidence            7899999887

>PRK06125 short chain dehydrogenase; Provisional

Probab=97.87  E-value=0.00019  Score=53.74  Aligned_cols=78  Identities=22%  Similarity=0.312  Sum_probs=51.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhc-CCce-Ee--C---hhHHHh-HHHhhCCCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL-GADY-VF--T---EEELRN-ISRDASIPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~l-g~~~-v~--~---~~~~~~-~~~~~~~~~~   81 (202)
                      .+.+++|.|+++++|..+++.+...|++|+.+.++++...+..+.+++. +... ++  |   +++... +.. .  +.+
T Consensus         6 ~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~-~--g~i   82 (259)
T PRK06125          6 AGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAE-A--GDI   82 (259)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHH-h--CCC
Confidence            4789999999999999999988899999998887765432222333332 3221 11  2   233333 322 2  579


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.+.|.
T Consensus        83 d~lv~~ag~   91 (259)
T PRK06125         83 DILVNNAGA   91 (259)
T ss_pred             CEEEECCCC
Confidence            999998874

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=97.87  E-value=0.00037  Score=53.73  Aligned_cols=75  Identities=19%  Similarity=0.297  Sum_probs=53.5

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhCCCCCeEEEec
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNC   87 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~~~~~d~vid~   87 (202)
                      -++.+|+|.|+| .+|..+++.++..|++.+.++++..+  ...+.++++|.. +++..++.+ +      ..+|+||.|
T Consensus       176 l~~~~V~ViGaG-~iG~~~a~~L~~~g~~~V~v~~r~~~--ra~~la~~~g~~-~~~~~~~~~~l------~~aDvVi~a  245 (311)
T cd05213         176 LKGKKVLVIGAG-EMGELAAKHLAAKGVAEITIANRTYE--RAEELAKELGGN-AVPLDELLELL------NEADVVISA  245 (311)
T ss_pred             ccCCEEEEECcH-HHHHHHHHHHHHcCCCEEEEEeCCHH--HHHHHHHHcCCe-EEeHHHHHHHH------hcCCEEEEC
Confidence            368999999997 99999999999888765555544321  134566778874 444444433 3      357999999


Q ss_pred             CCCchH
Q psy2961          88 VGGNSA   93 (202)
Q Consensus        88 ~g~~~~   93 (202)
                      ++.+..
T Consensus       246 t~~~~~  251 (311)
T cd05213         246 TGAPHY  251 (311)
T ss_pred             CCCCch
Confidence            998876

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=97.87  E-value=0.00017  Score=53.90  Aligned_cols=81  Identities=15%  Similarity=0.320  Sum_probs=52.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCce-Ee--C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-VF--T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-v~--~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .+.++||+|++|++|..+++.+...|++|+.++++.++.+...+.++..+... ++  |   .+++.. +.+... ..++
T Consensus        11 ~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~~~i   90 (259)
T PRK08213         11 SGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERFGHV   90 (259)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            47899999999999999999988899999988887653222223333333321 11  2   233333 222211 1468


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.++|.
T Consensus        91 d~vi~~ag~   99 (259)
T PRK08213         91 DILVNNAGA   99 (259)
T ss_pred             CEEEECCCC
Confidence            999999874

>PRK07060 short chain dehydrogenase; Provisional

Probab=97.85  E-value=0.00013  Score=53.96  Aligned_cols=77  Identities=19%  Similarity=0.229  Sum_probs=51.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHH-HhcCCceEe-ChhHHHhHHHhhC-CCCCeEEEe
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGADYVF-TEEELRNISRDAS-IPKPKLALN   86 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~v~-~~~~~~~~~~~~~-~~~~d~vid   86 (202)
                      .+.+++|+|++|++|..+++.+...|++|+.+.++.+.    .+.+ +..+...+. |..+...+.+... ..++|++|+
T Consensus         8 ~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~----~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d~vi~   83 (245)
T PRK07060          8 SGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAA----LDRLAGETGCEPLRLDVGDDAAIRAALAAAGAFDGLVN   83 (245)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHhCCeEEEecCCCHHHHHHHHHHhCCCCEEEE
Confidence            56899999999999999999999999998888876642    3333 334444332 3222222222111 246899999


Q ss_pred             cCCC
Q psy2961          87 CVGG   90 (202)
Q Consensus        87 ~~g~   90 (202)
                      +.|.
T Consensus        84 ~ag~   87 (245)
T PRK07060         84 CAGI   87 (245)
T ss_pred             CCCC
Confidence            9874

>PRK07063 short chain dehydrogenase; Provisional

Probab=97.85  E-value=0.00018  Score=53.86  Aligned_cols=81  Identities=12%  Similarity=0.146  Sum_probs=52.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHh--cCCce-Ee--C---hhHHHh-HHHhhC-CC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS--LGADY-VF--T---EEELRN-ISRDAS-IP   79 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~--lg~~~-v~--~---~~~~~~-~~~~~~-~~   79 (202)
                      .+.+++|.|+++++|..+++.+...|++|+.+.++++..++..+.+++  .+... ++  |   +++... +.+... -+
T Consensus         6 ~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   85 (260)
T PRK07063          6 AGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAFG   85 (260)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            468999999999999999999999999999888776543333333333  22221 11  2   233333 332211 14


Q ss_pred             CCeEEEecCCC
Q psy2961          80 KPKLALNCVGG   90 (202)
Q Consensus        80 ~~d~vid~~g~   90 (202)
                      ++|++|.++|.
T Consensus        86 ~id~li~~ag~   96 (260)
T PRK07063         86 PLDVLVNNAGI   96 (260)
T ss_pred             CCcEEEECCCc
Confidence            79999999873

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.85  E-value=0.00014  Score=56.04  Aligned_cols=101  Identities=17%  Similarity=0.208  Sum_probs=66.9

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCC--cEEEEecCcccHHHHHHHHHhcCCceEeC-hhHHHh-HHHhhCCCC
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWGL--KTINIVRNRDDIDKLKSYLKSLGADYVFT-EEELRN-ISRDASIPK   80 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~--~vi~~~~~~~~~~~~~~~~~~lg~~~v~~-~~~~~~-~~~~~~~~~   80 (202)
                      ...++++++||..|+|  .|..++.+++..+.  .|+++-.+++......+.++.+|.+.+.. ..|..+ ...   ...
T Consensus        75 ~L~i~~g~~VLDIG~G--tG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~---~~~  149 (322)
T PRK13943         75 WVGLDKGMRVLEIGGG--TGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPE---FAP  149 (322)
T ss_pred             hcCCCCCCEEEEEeCC--ccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccc---cCC
Confidence            4467899999999997  59999999998764  57777666653222334445566654331 223222 221   146


Q ss_pred             CeEEEecCCCchHH-HHHHhcccCcEEEEEe
Q psy2961          81 PKLALNCVGGNSAT-NLLRTLVSKGVMVTYG  110 (202)
Q Consensus        81 ~d~vid~~g~~~~~-~~~~~l~~~G~~v~~g  110 (202)
                      +|+|+.+.+-+... ...+.|+++|+++..-
T Consensus       150 fD~Ii~~~g~~~ip~~~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        150 YDVIFVTVGVDEVPETWFTQLKEGGRVIVPI  180 (322)
T ss_pred             ccEEEECCchHHhHHHHHHhcCCCCEEEEEe
Confidence            99999888765554 3778999999988743

>PRK07825 short chain dehydrogenase; Provisional

Probab=97.85  E-value=0.00014  Score=54.80  Aligned_cols=77  Identities=14%  Similarity=0.072  Sum_probs=50.5

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcC-CceEe-C---hhHHHh-HHHhhC-CCCCeE
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG-ADYVF-T---EEELRN-ISRDAS-IPKPKL   83 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg-~~~v~-~---~~~~~~-~~~~~~-~~~~d~   83 (202)
                      +.+++|+|++|++|..+++.+...|++|+.+.++++..   .+..++++ ...+. |   ++++.. +..... -+++|+
T Consensus         5 ~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~---~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~   81 (273)
T PRK07825          5 GKVVAITGGARGIGLATARALAALGARVAIGDLDEALA---KETAAELGLVVGGPLDVTDPASFAAFLDAVEADLGPIDV   81 (273)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHH---HHHHHHhccceEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            57999999999999999998888999988887766531   22223344 22221 2   344433 333221 157999


Q ss_pred             EEecCCC
Q psy2961          84 ALNCVGG   90 (202)
Q Consensus        84 vid~~g~   90 (202)
                      +|.++|.
T Consensus        82 li~~ag~   88 (273)
T PRK07825         82 LVNNAGV   88 (273)
T ss_pred             EEECCCc
Confidence            9999874

>PRK09072 short chain dehydrogenase; Provisional

Probab=97.85  E-value=0.00022  Score=53.52  Aligned_cols=80  Identities=18%  Similarity=0.240  Sum_probs=50.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCc-eEe--C---hhHHHh-HHHhhCCCCCe
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD-YVF--T---EEELRN-ISRDASIPKPK   82 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~-~v~--~---~~~~~~-~~~~~~~~~~d   82 (202)
                      ++.+++|+|++|++|..+++.+...|++|+.++++++...+....+ ..+.. ..+  |   .++... .......+++|
T Consensus         4 ~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id   82 (263)
T PRK09072          4 KDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARL-PYPGRHRWVVADLTSEAGREAVLARAREMGGIN   82 (263)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-hcCCceEEEEccCCCHHHHHHHHHHHHhcCCCC
Confidence            4678999999999999999998899999999888765322111121 11211 111  2   233333 22221125789


Q ss_pred             EEEecCCC
Q psy2961          83 LALNCVGG   90 (202)
Q Consensus        83 ~vid~~g~   90 (202)
                      ++|.++|.
T Consensus        83 ~lv~~ag~   90 (263)
T PRK09072         83 VLINNAGV   90 (263)
T ss_pred             EEEECCCC
Confidence            99999874

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=97.85  E-value=0.00047  Score=51.09  Aligned_cols=81  Identities=15%  Similarity=0.174  Sum_probs=50.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCccc-HHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD-IDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~-~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~   80 (202)
                      .+.+++|+|+++++|..+++.+...|++++..+++... ..+..+.++..+.....   |   .++... +.+... .++
T Consensus         2 ~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   81 (246)
T PRK12938          2 SQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAEVGE   81 (246)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            35789999999999999999999999998876654321 11122333344544321   2   333333 332211 157


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|++|.++|.
T Consensus        82 id~li~~ag~   91 (246)
T PRK12938         82 IDVLVNNAGI   91 (246)
T ss_pred             CCEEEECCCC
Confidence            9999999975

>PRK06701 short chain dehydrogenase; Provisional

Probab=97.85  E-value=0.00067  Score=51.77  Aligned_cols=82  Identities=13%  Similarity=0.229  Sum_probs=51.5

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCccc-HHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD-IDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IP   79 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~-~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~   79 (202)
                      -.+.++||+|+++++|..+++.+...|++|+.+.++.+. ..+..+.++..+....+   |   .+++.. +.+... ..
T Consensus        44 ~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~~  123 (290)
T PRK06701         44 LKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRELG  123 (290)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            346799999999999999998888899999888776532 11222333333433211   2   233333 333211 14


Q ss_pred             CCeEEEecCCC
Q psy2961          80 KPKLALNCVGG   90 (202)
Q Consensus        80 ~~d~vid~~g~   90 (202)
                      ++|++|.++|.
T Consensus       124 ~iD~lI~~Ag~  134 (290)
T PRK06701        124 RLDILVNNAAF  134 (290)
T ss_pred             CCCEEEECCcc
Confidence            68999998874

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=97.85  E-value=0.00022  Score=52.64  Aligned_cols=81  Identities=19%  Similarity=0.257  Sum_probs=53.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~~   81 (202)
                      ++.+|||+|++|++|..+++.+...|++|+.+.++++......+.++..+....+   |   ...+.. +.+... -.++
T Consensus         4 ~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   83 (246)
T PRK05653          4 QGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAFGAL   83 (246)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            3578999999999999999998889999988888766432223444444543222   2   233333 332211 1468


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |.+|.++|.
T Consensus        84 d~vi~~ag~   92 (246)
T PRK05653         84 DILVNNAGI   92 (246)
T ss_pred             CEEEECCCc
Confidence            999999864

>PLN02780 ketoreductase/ oxidoreductase

Probab=97.84  E-value=0.00014  Score=56.28  Aligned_cols=80  Identities=18%  Similarity=0.238  Sum_probs=52.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhc-CCceE----eC-h---hHHHh-HHHhhCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL-GADYV----FT-E---EELRN-ISRDASIP   79 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~l-g~~~v----~~-~---~~~~~-~~~~~~~~   79 (202)
                      .|.+++|+||++++|.+.++.+...|++|+.+.++++..++..+.+++. +...+    .| .   .+..+ +.+..++.
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~~  131 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEGL  131 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcCC
Confidence            5899999999999999999888889999999988876543333333332 21111    12 1   22223 44444444


Q ss_pred             CCeEEEecCC
Q psy2961          80 KPKLALNCVG   89 (202)
Q Consensus        80 ~~d~vid~~g   89 (202)
                      ++|++|+++|
T Consensus       132 didilVnnAG  141 (320)
T PLN02780        132 DVGVLINNVG  141 (320)
T ss_pred             CccEEEEecC
Confidence            6779999886

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=97.84  E-value=0.00024  Score=53.34  Aligned_cols=81  Identities=17%  Similarity=0.193  Sum_probs=53.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .+.+++|+|+++++|..++..+...|++++.+.++++...+..+.++..+.....   |   ++.... +.+... -+++
T Consensus         9 ~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   88 (265)
T PRK07097          9 KGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEVGVI   88 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence            5689999999999999999888889999988877765433333344444543221   2   233333 332211 1468


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.+.|.
T Consensus        89 d~li~~ag~   97 (265)
T PRK07097         89 DILVNNAGI   97 (265)
T ss_pred             CEEEECCCC
Confidence            999999874

>PRK06914 short chain dehydrogenase; Provisional

Probab=97.84  E-value=0.00054  Score=51.84  Aligned_cols=80  Identities=23%  Similarity=0.229  Sum_probs=50.0

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCC--c-eEe--C---hhHHHhHHHhh-CCCCC
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA--D-YVF--T---EEELRNISRDA-SIPKP   81 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~--~-~v~--~---~~~~~~~~~~~-~~~~~   81 (202)
                      +.++||+|++|++|..+++.+...|++|+.++++.+...+..+.+...+.  . .++  |   +++...+.+.. .-+++
T Consensus         3 ~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~i   82 (280)
T PRK06914          3 KKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGRI   82 (280)
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCCe
Confidence            56899999999999999998888999999988876643222233333332  1 111  3   22222111111 12468


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |+++.++|.
T Consensus        83 d~vv~~ag~   91 (280)
T PRK06914         83 DLLVNNAGY   91 (280)
T ss_pred             eEEEECCcc
Confidence            999999874

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=97.84  E-value=0.00024  Score=53.09  Aligned_cols=80  Identities=19%  Similarity=0.265  Sum_probs=52.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceE-e--C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-F--T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v-~--~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .+.+|||+|+++++|..+++.+...|++|+.+.++ +..++..+.+.+.+.... +  |   .++... +.+... .+++
T Consensus        14 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~i   92 (258)
T PRK06935         14 DGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEFGKI   92 (258)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            57899999999999999999999999999988876 322222333344443311 1  2   233333 332211 2468


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.+.|.
T Consensus        93 d~li~~ag~  101 (258)
T PRK06935         93 DILVNNAGT  101 (258)
T ss_pred             CEEEECCCC
Confidence            999998874

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.84  E-value=0.00022  Score=52.94  Aligned_cols=80  Identities=19%  Similarity=0.318  Sum_probs=51.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCc--eEe-C---hhHHHh-HHHh-hCCCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD--YVF-T---EEELRN-ISRD-ASIPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~--~v~-~---~~~~~~-~~~~-~~~~~~   81 (202)
                      .+.++||+|++|++|..+++.+...|++|+.+.++++...+..+.+.. +..  .+. |   .+++.. +.+. .....+
T Consensus         4 ~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   82 (251)
T PRK07231          4 EGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-GGRAIAVAADVSDEADVEAAVAAALERFGSV   82 (251)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-CCeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            457999999999999999999889999999998887642222222221 221  111 2   333333 3322 112468


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.++|.
T Consensus        83 d~vi~~ag~   91 (251)
T PRK07231         83 DILVNNAGT   91 (251)
T ss_pred             CEEEECCCC
Confidence            999998874

>PRK08643 acetoin reductase; Validated

Probab=97.83  E-value=0.00023  Score=53.05  Aligned_cols=80  Identities=14%  Similarity=0.175  Sum_probs=51.9

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCCCe
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPKPK   82 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~~d   82 (202)
                      +.++||+|+++++|..+++.+...|++|+.+.++.+...+....+...+.....   |   ++.... +.+... .+++|
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id   81 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGDLN   81 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence            578999999999999999999999999998887765432222333333332211   2   333333 333211 24699


Q ss_pred             EEEecCCC
Q psy2961          83 LALNCVGG   90 (202)
Q Consensus        83 ~vid~~g~   90 (202)
                      ++|.++|.
T Consensus        82 ~vi~~ag~   89 (256)
T PRK08643         82 VVVNNAGV   89 (256)
T ss_pred             EEEECCCC
Confidence            99999864

>PRK07035 short chain dehydrogenase; Provisional

Probab=97.83  E-value=0.00021  Score=53.16  Aligned_cols=81  Identities=14%  Similarity=0.251  Sum_probs=52.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCce-Ee--C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-VF--T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-v~--~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .+.+|+|.|+++++|..+++.+...|++|+.+.++.+...+..+.+.+.+... .+  |   .++... +.+... -+.+
T Consensus         7 ~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   86 (252)
T PRK07035          7 TGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERHGRL   86 (252)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            45789999999999999999999999999988877654322233333344321 11  2   233333 332211 1468


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |+++.+.|.
T Consensus        87 d~li~~ag~   95 (252)
T PRK07035         87 DILVNNAAA   95 (252)
T ss_pred             CEEEECCCc
Confidence            999998873

>PRK06057 short chain dehydrogenase; Provisional

Probab=97.83  E-value=0.0002  Score=53.43  Aligned_cols=78  Identities=18%  Similarity=0.188  Sum_probs=51.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-C---hhHHHh-HHHhhC-CCCCeE
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-T---EEELRN-ISRDAS-IPKPKL   83 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~---~~~~~~-~~~~~~-~~~~d~   83 (202)
                      .|.+|+|+|++|++|..+++.+...|++|+.+.++++..   .+...+++...+. |   .++... +.+... ..++|+
T Consensus         6 ~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~---~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~   82 (255)
T PRK06057          6 AGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAG---KAAADEVGGLFVPTDVTDEDAVNALFDTAAETYGSVDI   82 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHH---HHHHHHcCCcEEEeeCCCHHHHHHHHHHHHHHcCCCCE
Confidence            578999999999999999999999999998888766421   1222344433222 3   233333 332211 246899


Q ss_pred             EEecCCC
Q psy2961          84 ALNCVGG   90 (202)
Q Consensus        84 vid~~g~   90 (202)
                      +|.++|.
T Consensus        83 vi~~ag~   89 (255)
T PRK06057         83 AFNNAGI   89 (255)
T ss_pred             EEECCCc
Confidence            9998874

>KOG0725|consensus

Probab=97.82  E-value=0.00021  Score=53.96  Aligned_cols=82  Identities=20%  Similarity=0.314  Sum_probs=55.5

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCc------eEeC---hhHHHh-HHHhhC-
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD------YVFT---EEELRN-ISRDAS-   77 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~------~v~~---~~~~~~-~~~~~~-   77 (202)
                      -.|..++|+|+++++|.+++..+...|++|+.+.++++...+....+...+..      .+.|   .++... +..... 
T Consensus         6 l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~~   85 (270)
T KOG0725|consen    6 LAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVEK   85 (270)
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHHH
Confidence            36789999999999999999999999999999998887543333333333332      1112   233333 333222 


Q ss_pred             -CCCCeEEEecCCC
Q psy2961          78 -IPKPKLALNCVGG   90 (202)
Q Consensus        78 -~~~~d~vid~~g~   90 (202)
                       .+++|++++..|.
T Consensus        86 ~~GkidiLvnnag~   99 (270)
T KOG0725|consen   86 FFGKIDILVNNAGA   99 (270)
T ss_pred             hCCCCCEEEEcCCc
Confidence             2579999998874

>PRK06940 short chain dehydrogenase; Provisional

Probab=97.82  E-value=0.00068  Score=51.30  Aligned_cols=78  Identities=18%  Similarity=0.234  Sum_probs=48.8

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCce-Ee--C---hhHHHh-HHHhhCCCCCeE
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-VF--T---EEELRN-ISRDASIPKPKL   83 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-v~--~---~~~~~~-~~~~~~~~~~d~   83 (202)
                      +++++|.|++ ++|..+++.+. .|++|+.++++.+..++..+.++..+... ++  |   +++... +.+....+++|+
T Consensus         2 ~k~~lItGa~-gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~   79 (275)
T PRK06940          2 KEVVVVIGAG-GIGQAIARRVG-AGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPVTG   79 (275)
T ss_pred             CCEEEEECCC-hHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCCCE
Confidence            4678999985 99999888875 79999988877654322233344444322 12  2   334444 433211256999


Q ss_pred             EEecCCC
Q psy2961          84 ALNCVGG   90 (202)
Q Consensus        84 vid~~g~   90 (202)
                      +|.++|.
T Consensus        80 li~nAG~   86 (275)
T PRK06940         80 LVHTAGV   86 (275)
T ss_pred             EEECCCc
Confidence            9999974

>CHL00194 ycf39 Ycf39; Provisional

Probab=97.82  E-value=0.0003  Score=54.37  Aligned_cols=94  Identities=16%  Similarity=0.238  Sum_probs=61.2

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCCCeEEEecCCCc
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNCVGGN   91 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~vid~~g~~   91 (202)
                      +|+|+||+|.+|..+++.+...|.+|++++++.+    +...+...+.+.+. |-.+...+.+..  .++|+||++++..
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~----~~~~l~~~~v~~v~~Dl~d~~~l~~al--~g~d~Vi~~~~~~   75 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLR----KASFLKEWGAELVYGDLSLPETLPPSF--KGVTAIIDASTSR   75 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChH----HhhhHhhcCCEEEECCCCCHHHHHHHH--CCCCEEEECCCCC
Confidence            6999999999999999999899999999998764    23444445655443 222322233333  4689999987532


Q ss_pred             h-------------HHHHHHhcccCc--EEEEEecc
Q psy2961          92 S-------------ATNLLRTLVSKG--VMVTYGGM  112 (202)
Q Consensus        92 ~-------------~~~~~~~l~~~G--~~v~~g~~  112 (202)
                      .             ...+++.++..|  +++.++..
T Consensus        76 ~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~  111 (317)
T CHL00194         76 PSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSIL  111 (317)
T ss_pred             CCCccchhhhhHHHHHHHHHHHHHcCCCEEEEeccc
Confidence            1             112444444443  78887754

>KOG4169|consensus

Probab=97.82  E-value=0.0011  Score=47.98  Aligned_cols=104  Identities=13%  Similarity=0.175  Sum_probs=67.6

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhc-CCceEe-------ChhHHHh-HHHhhCC-CC
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL-GADYVF-------TEEELRN-ISRDASI-PK   80 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~l-g~~~v~-------~~~~~~~-~~~~~~~-~~   80 (202)
                      |.++++.|+.||+|+....-+...|+++.++..+.|.. +....+++. ....++       +..+.+. .++.... +.
T Consensus         5 GKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~En~-~a~akL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~~~fg~   83 (261)
T KOG4169|consen    5 GKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEENP-EAIAKLQAINPSVSVIFIKCDVTNRGDLEAAFDKILATFGT   83 (261)
T ss_pred             CceEEEecCCchhhHHHHHHHHHcCchheeehhhhhCH-HHHHHHhccCCCceEEEEEeccccHHHHHHHHHHHHHHhCc
Confidence            88999999999999999999999999999998888752 223333333 222222       2334444 4443322 45


Q ss_pred             CeEEEecCCCch------------------HHHHHHhc-----ccCcEEEEEeccCCC
Q psy2961          81 PKLALNCVGGNS------------------ATNLLRTL-----VSKGVMVTYGGMSRE  115 (202)
Q Consensus        81 ~d~vid~~g~~~------------------~~~~~~~l-----~~~G~~v~~g~~~~~  115 (202)
                      +|++|+..|-..                  +...++.+     .+||-+|.+++..+-
T Consensus        84 iDIlINgAGi~~dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv~GL  141 (261)
T KOG4169|consen   84 IDILINGAGILDDKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSVAGL  141 (261)
T ss_pred             eEEEEcccccccchhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEecccccc
Confidence            899999887311                  11123333     477999998876653

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=97.81  E-value=0.00024  Score=53.73  Aligned_cols=80  Identities=18%  Similarity=0.268  Sum_probs=52.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCce-Ee--C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-VF--T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-v~--~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .+.+++|+|+++++|..+++.+...|++|+.+.++.+...+..+.+++.+... .+  |   ..+... +.+... -+++
T Consensus         9 ~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~i   88 (278)
T PRK08277          9 KGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDFGPC   88 (278)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            47899999999999999999999999998888877654322333334444331 11  2   233333 332211 1479


Q ss_pred             eEEEecCC
Q psy2961          82 KLALNCVG   89 (202)
Q Consensus        82 d~vid~~g   89 (202)
                      |++|.++|
T Consensus        89 d~li~~ag   96 (278)
T PRK08277         89 DILINGAG   96 (278)
T ss_pred             CEEEECCC
Confidence            99999887

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=97.81  E-value=0.00022  Score=53.14  Aligned_cols=79  Identities=16%  Similarity=0.305  Sum_probs=52.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceE-e--C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-F--T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v-~--~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .|++++|+|+++++|.++++.+...|++|+.+.+++.  ++..+.+++.+.+.. +  |   +++... +.+... -+++
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i   84 (251)
T PRK12481          7 NGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVMGHI   84 (251)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHcCCC
Confidence            5789999999999999999999999999887765432  122344455554321 1  2   334444 333211 2469


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |+++.+.|.
T Consensus        85 D~lv~~ag~   93 (251)
T PRK12481         85 DILINNAGI   93 (251)
T ss_pred             CEEEECCCc
Confidence            999998873

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=97.81  E-value=0.00069  Score=50.77  Aligned_cols=80  Identities=10%  Similarity=0.107  Sum_probs=48.7

Q ss_pred             CCCEEEEeCCC--cHHHHHHHHHHHHCCCcEEEEecCcc--cHHHHHHHHHhcCCc-eEe--C---hhHHHh-HHHhhC-
Q psy2961          10 PGDVVIQNGAN--SACGQNVIQIARHWGLKTINIVRNRD--DIDKLKSYLKSLGAD-YVF--T---EEELRN-ISRDAS-   77 (202)
Q Consensus        10 ~g~~VlI~g~~--~~vG~~~i~la~~~g~~vi~~~~~~~--~~~~~~~~~~~lg~~-~v~--~---~~~~~~-~~~~~~-   77 (202)
                      .|++++|+|++  +++|.++++.+...|++|+.+.++.+  ...+..+.+.+.+.. ..+  |   +++... +.+... 
T Consensus         5 ~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~   84 (258)
T PRK07370          5 TGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETIKQK   84 (258)
T ss_pred             CCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHHHHH
Confidence            47899999985  79999999998899999887754432  111223333332221 122  2   333333 333221 


Q ss_pred             CCCCeEEEecCC
Q psy2961          78 IPKPKLALNCVG   89 (202)
Q Consensus        78 ~~~~d~vid~~g   89 (202)
                      .+.+|++|.++|
T Consensus        85 ~g~iD~lv~nag   96 (258)
T PRK07370         85 WGKLDILVHCLA   96 (258)
T ss_pred             cCCCCEEEEccc
Confidence            146999999887

>PRK07985 oxidoreductase; Provisional

Probab=97.81  E-value=0.00064  Score=52.01  Aligned_cols=81  Identities=14%  Similarity=0.153  Sum_probs=49.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc--cHHHHHHHHHhcCCceE-e--C---hhHHHh-HHHhhC-CC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD--DIDKLKSYLKSLGADYV-F--T---EEELRN-ISRDAS-IP   79 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~--~~~~~~~~~~~lg~~~v-~--~---~~~~~~-~~~~~~-~~   79 (202)
                      .+.++||+|+++++|.++++.+...|++|+.+.++.+  ..++..+.+++.+.... +  |   .++... +.+... -+
T Consensus        48 ~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g  127 (294)
T PRK07985         48 KDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKALG  127 (294)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            4579999999999999999999999999887664432  11111222333443221 1  2   233333 333221 24


Q ss_pred             CCeEEEecCCC
Q psy2961          80 KPKLALNCVGG   90 (202)
Q Consensus        80 ~~d~vid~~g~   90 (202)
                      ++|+++.+.|.
T Consensus       128 ~id~lv~~Ag~  138 (294)
T PRK07985        128 GLDIMALVAGK  138 (294)
T ss_pred             CCCEEEECCCC
Confidence            68999998763

>PRK08628 short chain dehydrogenase; Provisional

Probab=97.81  E-value=0.00027  Score=52.75  Aligned_cols=80  Identities=19%  Similarity=0.226  Sum_probs=52.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .|.++||+|++|++|..+++.+...|++++.++++++.. +..+.+++.+.....   |   .++... +.+... .+++
T Consensus         6 ~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   84 (258)
T PRK08628          6 KDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDD-EFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKFGRI   84 (258)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhH-HHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence            467999999999999999988888999998888776532 222333334433211   2   233333 333221 1478


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.++|.
T Consensus        85 d~vi~~ag~   93 (258)
T PRK08628         85 DGLVNNAGV   93 (258)
T ss_pred             CEEEECCcc
Confidence            999999983

>PRK07454 short chain dehydrogenase; Provisional

Probab=97.80  E-value=0.00029  Score=52.09  Aligned_cols=82  Identities=20%  Similarity=0.270  Sum_probs=52.9

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCce-Ee--C---hhHHHh-HHHhhC-CCC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-VF--T---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-v~--~---~~~~~~-~~~~~~-~~~   80 (202)
                      ..+.+++|.|++|++|..+++.+...|++|+.+.++++...+..+.+++.+... ++  |   +++... +..... .++
T Consensus         4 ~~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   83 (241)
T PRK07454          4 NSMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGC   83 (241)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            356789999999999999999999999999998887654322223333333321 11  2   333333 332211 246


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|++|.++|.
T Consensus        84 id~lv~~ag~   93 (241)
T PRK07454         84 PDVLINNAGM   93 (241)
T ss_pred             CCEEEECCCc
Confidence            8999999874

>PRK08017 oxidoreductase; Provisional

Probab=97.80  E-value=0.00024  Score=52.89  Aligned_cols=75  Identities=17%  Similarity=0.187  Sum_probs=51.7

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-C---hhHHHh-HHHhh--CCCCCeEE
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-T---EEELRN-ISRDA--SIPKPKLA   84 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~---~~~~~~-~~~~~--~~~~~d~v   84 (202)
                      ++|+|+|++|++|..+++.+...|++|+++.++.+    +.+.+++.+...+. |   ..+... +....  .+..+|.+
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~----~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~i   78 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPD----DVARMNSLGFTGILLDLDDPESVERAADEVIALTDNRLYGL   78 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH----HhHHHHhCCCeEEEeecCCHHHHHHHHHHHHHhcCCCCeEE
Confidence            57999999999999999999999999988887765    45555666665443 2   233333 22221  12468898


Q ss_pred             EecCCC
Q psy2961          85 LNCVGG   90 (202)
Q Consensus        85 id~~g~   90 (202)
                      +.+.|.
T Consensus        79 i~~ag~   84 (256)
T PRK08017         79 FNNAGF   84 (256)
T ss_pred             EECCCC
Confidence            888763

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=97.78  E-value=0.00022  Score=53.46  Aligned_cols=76  Identities=16%  Similarity=0.266  Sum_probs=50.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHH-HhcCCc-eEe--C---hhHHHh-HHHhhC-CCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGAD-YVF--T---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~-~v~--~---~~~~~~-~~~~~~-~~~   80 (202)
                      .+.+++|+|+++++|..+++.+...|++|+.+.++++.    .+.+ .+++.. .++  |   ..+... +.+... .+.
T Consensus         5 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   80 (263)
T PRK06200          5 HGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEK----LASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDAFGK   80 (263)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            46899999999999999999999999999888877653    3333 333321 111  2   233333 333221 246


Q ss_pred             CeEEEecCC
Q psy2961          81 PKLALNCVG   89 (202)
Q Consensus        81 ~d~vid~~g   89 (202)
                      +|++|.++|
T Consensus        81 id~li~~ag   89 (263)
T PRK06200         81 LDCFVGNAG   89 (263)
T ss_pred             CCEEEECCC
Confidence            899999887

>PRK12937 short chain dehydrogenase; Provisional

Probab=97.78  E-value=0.00099  Score=49.23  Aligned_cols=81  Identities=14%  Similarity=0.182  Sum_probs=50.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCccc-HHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD-IDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~-~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~   80 (202)
                      ++.+++|+|++|++|..+++.+...|++++.+.++.+. ..+..+.++..+.....   |   .++... +.+... -++
T Consensus         4 ~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   83 (245)
T PRK12937          4 SNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAFGR   83 (245)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            56799999999999999999999999998877765432 11122333334432111   2   233333 332211 146


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|++|.++|.
T Consensus        84 id~vi~~ag~   93 (245)
T PRK12937         84 IDVLVNNAGV   93 (245)
T ss_pred             CCEEEECCCC
Confidence            8999998874

>PRK06720 hypothetical protein; Provisional

Probab=97.78  E-value=0.00044  Score=48.47  Aligned_cols=80  Identities=18%  Similarity=0.278  Sum_probs=50.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceE-e--C---hhHHHh-HHHhh-CCCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-F--T---EEELRN-ISRDA-SIPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v-~--~---~~~~~~-~~~~~-~~~~~   81 (202)
                      .+.+++|.|+++++|..++..+...|++|+.+.++.+...+..+.+++.+.... +  |   ..++.. +.+.. .-+++
T Consensus        15 ~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~G~i   94 (169)
T PRK06720         15 AGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAFSRI   94 (169)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            578999999999999999988888999988887665432222233333443321 2  2   233333 32221 12468


Q ss_pred             eEEEecCC
Q psy2961          82 KLALNCVG   89 (202)
Q Consensus        82 d~vid~~g   89 (202)
                      |++|.++|
T Consensus        95 DilVnnAG  102 (169)
T PRK06720         95 DMLFQNAG  102 (169)
T ss_pred             CEEEECCC
Confidence            99998877

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=97.78  E-value=8.4e-05  Score=57.55  Aligned_cols=80  Identities=15%  Similarity=0.096  Sum_probs=50.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCc-eEe--C---hhHHHh-HHHhh-CCCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD-YVF--T---EEELRN-ISRDA-SIPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~-~v~--~---~~~~~~-~~~~~-~~~~~   81 (202)
                      .+.+++|+|+++++|..+++.+...|++|+.++++.+...+..+.++..+.. .++  |   ..+... +.+.. ...++
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~i   84 (322)
T PRK07453          5 AKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRALGKPL   84 (322)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHHhCCCc
Confidence            4679999999999999999988889999999887765322222222211211 111  2   233333 33321 12469


Q ss_pred             eEEEecCC
Q psy2961          82 KLALNCVG   89 (202)
Q Consensus        82 d~vid~~g   89 (202)
                      |++|+++|
T Consensus        85 D~li~nAg   92 (322)
T PRK07453         85 DALVCNAA   92 (322)
T ss_pred             cEEEECCc
Confidence            99999887

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=97.77  E-value=0.00034  Score=52.18  Aligned_cols=81  Identities=19%  Similarity=0.270  Sum_probs=53.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCce--Ee-C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY--VF-T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~--v~-~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .|.+++|.|+++++|..+++.+...|++|+.+.++++...+..+.+++.+...  +. |   +.++.. +..... -+.+
T Consensus        10 ~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   89 (256)
T PRK06124         10 AGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEHGRL   89 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence            57899999999999999999888899999998887654333333344444321  11 2   333333 332211 1468


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.+.|.
T Consensus        90 d~vi~~ag~   98 (256)
T PRK06124         90 DILVNNVGA   98 (256)
T ss_pred             CEEEECCCC
Confidence            999998874

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=97.77  E-value=0.00039  Score=51.82  Aligned_cols=81  Identities=21%  Similarity=0.231  Sum_probs=52.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCce--Ee-C---hhHHHh-HHHhh-CCCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY--VF-T---EEELRN-ISRDA-SIPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~--v~-~---~~~~~~-~~~~~-~~~~~   81 (202)
                      .+.+|||+|++|++|..+++.+...|++|+.+.++++...+....++..+...  +. |   +++... +.+.. ...++
T Consensus         3 ~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~   82 (258)
T PRK12429          3 KGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFGGV   82 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            35799999999999999999888899999999888764322223333334332  11 2   333333 22221 11468


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.+++.
T Consensus        83 d~vi~~a~~   91 (258)
T PRK12429         83 DILVNNAGI   91 (258)
T ss_pred             CEEEECCCC
Confidence            999998873

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=97.77  E-value=0.00024  Score=53.27  Aligned_cols=76  Identities=16%  Similarity=0.217  Sum_probs=50.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHh-cCCce-Ee--C---hhHHHh-HHHhhC-CCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS-LGADY-VF--T---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~-lg~~~-v~--~---~~~~~~-~~~~~~-~~~   80 (202)
                      .+.+++|+|+++++|..+++.+...|++|+.+.++.+    +.+.+.+ .+... .+  |   +.+... +.+... -+.
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~----~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   79 (262)
T TIGR03325         4 KGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAA----GLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVAAFGK   79 (262)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHhhcCCceEEEEeccCCHHHHHHHHHHHHHHhCC
Confidence            4789999999999999999999999999988877654    2333333 33221 11  2   233333 333221 146


Q ss_pred             CeEEEecCC
Q psy2961          81 PKLALNCVG   89 (202)
Q Consensus        81 ~d~vid~~g   89 (202)
                      +|++|.+.|
T Consensus        80 id~li~~Ag   88 (262)
T TIGR03325        80 IDCLIPNAG   88 (262)
T ss_pred             CCEEEECCC
Confidence            899999886

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=97.76  E-value=0.00019  Score=57.71  Aligned_cols=75  Identities=16%  Similarity=0.274  Sum_probs=51.9

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCc-EEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEec
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNC   87 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~   87 (202)
                      .++.+|+|+|+| .+|.++++.++..|+. ++++.++.+.   ..+.++.+|.+ +++..+..+   ..  .++|+||+|
T Consensus       180 ~~~~~vlViGaG-~iG~~~a~~L~~~G~~~V~v~~r~~~r---a~~la~~~g~~-~~~~~~~~~---~l--~~aDvVI~a  249 (423)
T PRK00045        180 LSGKKVLVIGAG-EMGELVAKHLAEKGVRKITVANRTLER---AEELAEEFGGE-AIPLDELPE---AL--AEADIVISS  249 (423)
T ss_pred             ccCCEEEEECch-HHHHHHHHHHHHCCCCeEEEEeCCHHH---HHHHHHHcCCc-EeeHHHHHH---Hh--ccCCEEEEC
Confidence            467899999997 9999999999999985 4455444431   23456677764 444444433   11  468999999


Q ss_pred             CCCchH
Q psy2961          88 VGGNSA   93 (202)
Q Consensus        88 ~g~~~~   93 (202)
                      +|.+..
T Consensus       250 T~s~~~  255 (423)
T PRK00045        250 TGAPHP  255 (423)
T ss_pred             CCCCCc
Confidence            987653

>PRK06500 short chain dehydrogenase; Provisional

Probab=97.75  E-value=0.00027  Score=52.42  Aligned_cols=78  Identities=14%  Similarity=0.123  Sum_probs=51.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~~   81 (202)
                      ++.+|+|+|++|++|..+++.+...|++++.+.++++.   ..+..++++.....   |   .++... +..... .+++
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~---~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   81 (249)
T PRK06500          5 QGKTALITGGTSGIGLETARQFLAEGARVAITGRDPAS---LEAARAELGESALVIRADAGDVAAQKALAQALAEAFGRL   81 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHH---HHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence            46799999999999999999999999999888776542   12333445543211   2   223322 222111 2468


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.++|.
T Consensus        82 d~vi~~ag~   90 (249)
T PRK06500         82 DAVFINAGV   90 (249)
T ss_pred             CEEEECCCC
Confidence            999998874

>PRK06138 short chain dehydrogenase; Provisional

Probab=97.75  E-value=0.00031  Score=52.14  Aligned_cols=80  Identities=18%  Similarity=0.253  Sum_probs=51.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCce-Ee--C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-VF--T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-v~--~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .+.+++|+|++|++|..+++.+...|++|+.+.++.+...+..+.++ .+... ++  |   +++..+ +.+... .+++
T Consensus         4 ~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~i   82 (252)
T PRK06138          4 AGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AGGRAFARQGDVGSAEAVEALVDFVAARWGRL   82 (252)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-cCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            46799999999999999998888889999999887654322222222 23221 11  2   333333 222211 1478


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.++|.
T Consensus        83 d~vi~~ag~   91 (252)
T PRK06138         83 DVLVNNAGF   91 (252)
T ss_pred             CEEEECCCC
Confidence            999999884

>PRK08177 short chain dehydrogenase; Provisional

Probab=97.75  E-value=0.00035  Score=51.15  Aligned_cols=75  Identities=15%  Similarity=0.145  Sum_probs=50.2

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe--C---hhHHHhHHHhhCCCCCeEEEe
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--T---EEELRNISRDASIPKPKLALN   86 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~--~---~~~~~~~~~~~~~~~~d~vid   86 (202)
                      .+|+|+|++|++|..+++.+...|++|+.+.++++.    .+.+++++...+.  |   .++...+.+...+.++|++|.
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~id~vi~   77 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQ----DTALQALPGVHIEKLDMNDPASLDQLLQRLQGQRFDLLFV   77 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcc----hHHHHhccccceEEcCCCCHHHHHHHHHHhhcCCCCEEEE
Confidence            479999999999999998888899999999888764    3334433222221  2   333444222233357999999


Q ss_pred             cCCC
Q psy2961          87 CVGG   90 (202)
Q Consensus        87 ~~g~   90 (202)
                      ++|.
T Consensus        78 ~ag~   81 (225)
T PRK08177         78 NAGI   81 (225)
T ss_pred             cCcc
Confidence            8763

>PRK07774 short chain dehydrogenase; Provisional

Probab=97.75  E-value=0.00036  Score=51.77  Aligned_cols=81  Identities=15%  Similarity=0.145  Sum_probs=50.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCce--E-eC---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY--V-FT---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~--v-~~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .+.+++|+|++|++|..+++.+...|++|+.+.++++...+..+.++..+...  + .|   ..+... +.+... .+++
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   84 (250)
T PRK07774          5 DDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFGGI   84 (250)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence            46789999999999999999888899999998877653222222333223221  1 12   233333 222211 1468


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.++|.
T Consensus        85 d~vi~~ag~   93 (250)
T PRK07774         85 DYLVNNAAI   93 (250)
T ss_pred             CEEEECCCC
Confidence            999999883

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=97.75  E-value=0.00092  Score=49.69  Aligned_cols=74  Identities=18%  Similarity=0.248  Sum_probs=48.9

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHH-HhcCCceE-e--C---hhHHHh-HHHhhC-CCCCeE
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGADYV-F--T---EEELRN-ISRDAS-IPKPKL   83 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~v-~--~---~~~~~~-~~~~~~-~~~~d~   83 (202)
                      +|+|.|++|++|.++++.+...|++|+.+.++++.    .+.+ ..++.... +  |   +++... +.+... .+++|+
T Consensus         2 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~   77 (248)
T PRK10538          2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQER----LQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDV   77 (248)
T ss_pred             EEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            68999999999999999999999999998887653    3333 22333211 1  2   333333 333221 146999


Q ss_pred             EEecCCC
Q psy2961          84 ALNCVGG   90 (202)
Q Consensus        84 vid~~g~   90 (202)
                      +|.++|.
T Consensus        78 vi~~ag~   84 (248)
T PRK10538         78 LVNNAGL   84 (248)
T ss_pred             EEECCCc
Confidence            9998864

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.75  E-value=0.00037  Score=51.40  Aligned_cols=81  Identities=17%  Similarity=0.266  Sum_probs=52.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .+.+++|.|++|++|..++..+...|++|+.+.++++...+..+.++..+....+   |   +.++.. +.+... -.++
T Consensus         6 ~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   85 (239)
T PRK07666          6 QGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELGSI   85 (239)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcCCc
Confidence            3578999999999999999988899999999887765422222333333332211   2   233333 333211 2478


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.+.|.
T Consensus        86 d~vi~~ag~   94 (239)
T PRK07666         86 DILINNAGI   94 (239)
T ss_pred             cEEEEcCcc
Confidence            999998874

>PRK06196 oxidoreductase; Provisional

Probab=97.74  E-value=0.00026  Score=54.62  Aligned_cols=78  Identities=21%  Similarity=0.225  Sum_probs=51.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcC-CceEe-C---hhHHHh-HHHhhC-CCCCe
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG-ADYVF-T---EEELRN-ISRDAS-IPKPK   82 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg-~~~v~-~---~~~~~~-~~~~~~-~~~~d   82 (202)
                      .+.+|+|+|++|++|..+++.+...|++|+.++++.+...   +.+.++. ...+. |   .++... +.+... ..++|
T Consensus        25 ~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~---~~~~~l~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~iD  101 (315)
T PRK06196         25 SGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAR---EALAGIDGVEVVMLDLADLESVRAFAERFLDSGRRID  101 (315)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH---HHHHHhhhCeEEEccCCCHHHHHHHHHHHHhcCCCCC
Confidence            4689999999999999999988889999999888765322   2222221 22211 2   333333 333221 25799


Q ss_pred             EEEecCCC
Q psy2961          83 LALNCVGG   90 (202)
Q Consensus        83 ~vid~~g~   90 (202)
                      ++|.++|.
T Consensus       102 ~li~nAg~  109 (315)
T PRK06196        102 ILINNAGV  109 (315)
T ss_pred             EEEECCCC
Confidence            99998873

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=97.74  E-value=0.00038  Score=51.61  Aligned_cols=81  Identities=15%  Similarity=0.195  Sum_probs=52.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCce-Ee--C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-VF--T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-v~--~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .+.+|+|+|++|++|..+++.+...|++|+.++++.+...+..+.+...+... ++  |   .+++.. +.+... ...+
T Consensus         5 ~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~   84 (251)
T PRK12826          5 EGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFGRL   84 (251)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            46799999999999999998888889999999887654333333344444321 11  2   233333 332211 1468


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.+.|.
T Consensus        85 d~vi~~ag~   93 (251)
T PRK12826         85 DILVANAGI   93 (251)
T ss_pred             CEEEECCCC
Confidence            999998864

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=97.74  E-value=0.00055  Score=49.24  Aligned_cols=101  Identities=14%  Similarity=0.167  Sum_probs=63.4

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCC--CcEEEEecCcccHHHHHHHHHhcC-CceEeC-hhHHHh-HHHhhCCC
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWG--LKTINIVRNRDDIDKLKSYLKSLG-ADYVFT-EEELRN-ISRDASIP   79 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g--~~vi~~~~~~~~~~~~~~~~~~lg-~~~v~~-~~~~~~-~~~~~~~~   79 (202)
                      ...+.++++|+-.|+|+  |.+++.+++..+  .+++++-.+++..+...+.++.++ .+.+.. ..+..+ +...  ..
T Consensus        35 ~l~~~~~~~vlDlG~Gt--G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~--~~  110 (198)
T PRK00377         35 KLRLRKGDMILDIGCGT--GSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTI--NE  110 (198)
T ss_pred             HcCCCCcCEEEEeCCcC--CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhc--CC
Confidence            35678999999999984  899999998764  467777776653222233444566 332221 123323 3221  24


Q ss_pred             CCeEEEecCCCch----HHHHHHhcccCcEEEEE
Q psy2961          80 KPKLALNCVGGNS----ATNLLRTLVSKGVMVTY  109 (202)
Q Consensus        80 ~~d~vid~~g~~~----~~~~~~~l~~~G~~v~~  109 (202)
                      .+|.||...+...    +..+.+.|+++|+++..
T Consensus       111 ~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~  144 (198)
T PRK00377        111 KFDRIFIGGGSEKLKEIISASWEIIKKGGRIVID  144 (198)
T ss_pred             CCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEE
Confidence            6999998655332    22367789999999863

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=97.73  E-value=0.00025  Score=49.47  Aligned_cols=93  Identities=17%  Similarity=0.287  Sum_probs=60.8

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCC--ceEeChhHHHhHHHhhCCCCCeEEEecCCC
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA--DYVFTEEELRNISRDASIPKPKLALNCVGG   90 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~--~~v~~~~~~~~~~~~~~~~~~d~vid~~g~   90 (202)
                      +|.|+|++|-+|..+++-|+..|.+|+++++++++    ....+....  ..+++...   +.+..  .++|+||++.|.
T Consensus         2 KIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K----~~~~~~~~i~q~Difd~~~---~a~~l--~g~DaVIsA~~~   72 (211)
T COG2910           2 KIAIIGASGKAGSRILKEALKRGHEVTAIVRNASK----LAARQGVTILQKDIFDLTS---LASDL--AGHDAVISAFGA   72 (211)
T ss_pred             eEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHh----ccccccceeecccccChhh---hHhhh--cCCceEEEeccC
Confidence            57899999999999999999999999999999873    322211100  01122222   21222  689999999876


Q ss_pred             ch--H--------HHHHHhcccC--cEEEEEeccCC
Q psy2961          91 NS--A--------TNLLRTLVSK--GVMVTYGGMSR  114 (202)
Q Consensus        91 ~~--~--------~~~~~~l~~~--G~~v~~g~~~~  114 (202)
                      ..  .        ..++..|+..  -|+..+|+..+
T Consensus        73 ~~~~~~~~~~k~~~~li~~l~~agv~RllVVGGAGS  108 (211)
T COG2910          73 GASDNDELHSKSIEALIEALKGAGVPRLLVVGGAGS  108 (211)
T ss_pred             CCCChhHHHHHHHHHHHHHHhhcCCeeEEEEcCccc
Confidence            51  1        1145566553  48888886654

>PRK09242 tropinone reductase; Provisional

Probab=97.73  E-value=0.00038  Score=51.98  Aligned_cols=81  Identities=16%  Similarity=0.270  Sum_probs=52.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhc--CCceE-e--C---hhHHHh-HHHhhC-CC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL--GADYV-F--T---EEELRN-ISRDAS-IP   79 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~l--g~~~v-~--~---~~~~~~-~~~~~~-~~   79 (202)
                      .|.+++|+|+++++|..+++.+...|++|+.+.++.+...+..+.++..  +.... +  |   +++... +.+... -+
T Consensus         8 ~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   87 (257)
T PRK09242          8 DGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHWD   87 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            4789999999999999999999999999999888765432222333332  22211 1  2   233333 332211 25


Q ss_pred             CCeEEEecCCC
Q psy2961          80 KPKLALNCVGG   90 (202)
Q Consensus        80 ~~d~vid~~g~   90 (202)
                      ++|++|.+.|.
T Consensus        88 ~id~li~~ag~   98 (257)
T PRK09242         88 GLHILVNNAGG   98 (257)
T ss_pred             CCCEEEECCCC
Confidence            79999999985

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=97.73  E-value=0.00034  Score=51.91  Aligned_cols=83  Identities=13%  Similarity=0.227  Sum_probs=54.1

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCce--Ee-------ChhHHHh-HHHhhC
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY--VF-------TEEELRN-ISRDAS   77 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~--v~-------~~~~~~~-~~~~~~   77 (202)
                      ..++.+|+|.|+++++|..+++.+...|++|+.+.++.+..++..+.+++.+...  ++       +..++.+ +.....
T Consensus         9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   88 (247)
T PRK08945          9 LLKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEE   88 (247)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHH
Confidence            4578899999999999999998888889999998887654333334444444321  11       1233333 222211


Q ss_pred             -CCCCeEEEecCCC
Q psy2961          78 -IPKPKLALNCVGG   90 (202)
Q Consensus        78 -~~~~d~vid~~g~   90 (202)
                       ...+|++|.++|.
T Consensus        89 ~~~~id~vi~~Ag~  102 (247)
T PRK08945         89 QFGRLDGVLHNAGL  102 (247)
T ss_pred             HhCCCCEEEECCcc
Confidence             1468999998764

>PRK07326 short chain dehydrogenase; Provisional

Probab=97.73  E-value=0.00034  Score=51.52  Aligned_cols=78  Identities=13%  Similarity=0.185  Sum_probs=50.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcC----CceEe-C---hhHHHh-HHHhhC-CC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG----ADYVF-T---EEELRN-ISRDAS-IP   79 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg----~~~v~-~---~~~~~~-~~~~~~-~~   79 (202)
                      ++.+|+|+|++|++|..+++.+...|++|+++.++++..   .+..+++.    ...+. |   ..++.. +.+... ..
T Consensus         5 ~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~---~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (237)
T PRK07326          5 KGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKEL---EEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFG   81 (237)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHH---HHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            468999999999999999988888899999988776532   12223332    12111 2   333433 333221 14


Q ss_pred             CCeEEEecCCC
Q psy2961          80 KPKLALNCVGG   90 (202)
Q Consensus        80 ~~d~vid~~g~   90 (202)
                      ++|++|.+.|.
T Consensus        82 ~~d~vi~~ag~   92 (237)
T PRK07326         82 GLDVLIANAGV   92 (237)
T ss_pred             CCCEEEECCCC
Confidence            78999998864

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.73  E-value=0.00036  Score=52.05  Aligned_cols=78  Identities=13%  Similarity=0.189  Sum_probs=51.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-C---hhHHHh-HHHhhC-CCCCeE
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-T---EEELRN-ISRDAS-IPKPKL   83 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~---~~~~~~-~~~~~~-~~~~d~   83 (202)
                      .+.+++|+|+++++|..+++.+...|++|+.+.++.+.   ..+.++..+...+. |   +++... +.+... -+++|+
T Consensus         6 ~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~---~~~~l~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~   82 (255)
T PRK06463          6 KGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAEN---EAKELREKGVFTIKCDVGNRDQVKKSKEVVEKEFGRVDV   82 (255)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHH---HHHHHHhCCCeEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            46899999999999999999999999998877665432   33444433433222 2   333333 333211 146899


Q ss_pred             EEecCCC
Q psy2961          84 ALNCVGG   90 (202)
Q Consensus        84 vid~~g~   90 (202)
                      +|.++|.
T Consensus        83 li~~ag~   89 (255)
T PRK06463         83 LVNNAGI   89 (255)
T ss_pred             EEECCCc
Confidence            9998874

>PRK06114 short chain dehydrogenase; Provisional

Probab=97.73  E-value=0.00053  Score=51.16  Aligned_cols=81  Identities=22%  Similarity=0.300  Sum_probs=52.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCccc-HHHHHHHHHhcCCce-Ee--C---hhHHHh-HHHhhC-CCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD-IDKLKSYLKSLGADY-VF--T---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~-~~~~~~~~~~lg~~~-v~--~---~~~~~~-~~~~~~-~~~   80 (202)
                      .+.+++|+|+++++|..+++.+...|++|+.+.++.+. .++..+.++..+... .+  |   .++... +.+... .+.
T Consensus         7 ~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~   86 (254)
T PRK06114          7 DGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEAELGA   86 (254)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            46799999999999999999999999999988876542 122233344444321 11  2   333333 333211 256


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|++|.+.|.
T Consensus        87 id~li~~ag~   96 (254)
T PRK06114         87 LTLAVNAAGI   96 (254)
T ss_pred             CCEEEECCCC
Confidence            8999999974

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.72  E-value=0.00036  Score=51.80  Aligned_cols=81  Identities=14%  Similarity=0.236  Sum_probs=50.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEe-cCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIV-RNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~-~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~   80 (202)
                      ++.+++|+|++|++|..+++.+...|++|+.+. ++.+..++..+.++..+.....   |   +.+... +.+... .++
T Consensus         3 ~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (250)
T PRK08063          3 SGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEFGR   82 (250)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            467999999999999999999999999987654 3433222222334444443221   2   233333 333221 146


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|++|.+.|.
T Consensus        83 id~vi~~ag~   92 (250)
T PRK08063         83 LDVFVNNAAS   92 (250)
T ss_pred             CCEEEECCCC
Confidence            8999998873

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.72  E-value=0.00048  Score=52.99  Aligned_cols=81  Identities=15%  Similarity=0.184  Sum_probs=51.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc-cHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhCCCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD-DIDKLKSYLKSLGADYVF---T---EEELRN-ISRDASIPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~-~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~~~~~   81 (202)
                      .|.+++|+|+++++|...++.+...|++|+....+.. ..++..+.+++.|.....   |   .++... +.....-+.+
T Consensus        11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~~g~i   90 (306)
T PRK07792         11 SGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVGLGGL   90 (306)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHhCCC
Confidence            5789999999999999999988889999888765433 211223334444543222   2   233333 3322222579


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.++|.
T Consensus        91 D~li~nAG~   99 (306)
T PRK07792         91 DIVVNNAGI   99 (306)
T ss_pred             CEEEECCCC
Confidence            999998874

>PRK05650 short chain dehydrogenase; Provisional

Probab=97.72  E-value=0.00038  Score=52.41  Aligned_cols=78  Identities=17%  Similarity=0.131  Sum_probs=50.8

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhh-CCCCCeEE
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDA-SIPKPKLA   84 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~-~~~~~d~v   84 (202)
                      +|+|+|++|++|..+++.+...|++|+.+.++.+..++..+.++..+.+..+   |   +.+..+ +.... ...++|++
T Consensus         2 ~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id~l   81 (270)
T PRK05650          2 RVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGIDVI   81 (270)
T ss_pred             EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            6899999999999999888889999998887765433333334444433221   2   233333 32221 12469999


Q ss_pred             EecCCC
Q psy2961          85 LNCVGG   90 (202)
Q Consensus        85 id~~g~   90 (202)
                      |.++|.
T Consensus        82 I~~ag~   87 (270)
T PRK05650         82 VNNAGV   87 (270)
T ss_pred             EECCCC
Confidence            999874

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=97.71  E-value=0.00044  Score=51.29  Aligned_cols=79  Identities=18%  Similarity=0.303  Sum_probs=52.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCce-Ee--C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-VF--T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-v~--~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .|.++||+|+++++|..+++.+...|++|+.+.+++.  .+..+.+++++... ++  |   .++... +.+... ..++
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   81 (248)
T TIGR01832         4 EGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEP--SETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEEFGHI   81 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchH--HHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            4789999999999999999998899999988886542  22234445555331 11  2   333433 333221 2469


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.++|.
T Consensus        82 d~li~~ag~   90 (248)
T TIGR01832        82 DILVNNAGI   90 (248)
T ss_pred             CEEEECCCC
Confidence            999998874

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.69  E-value=0.00029  Score=51.25  Aligned_cols=103  Identities=23%  Similarity=0.194  Sum_probs=63.9

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCC--CcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWG--LKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPK   80 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g--~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~   80 (202)
                      +..++++|++||-.|+|  .|..+..+++..+  .+|+++-.+++-.+...+.++.+|...+. ...|...  .......
T Consensus        70 ~~l~~~~g~~VLdIG~G--sG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~--~~~~~~~  145 (212)
T PRK13942         70 ELLDLKEGMKVLEIGTG--SGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTL--GYEENAP  145 (212)
T ss_pred             HHcCCCCcCEEEEECCc--ccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCccc--CCCcCCC
Confidence            34568899999999987  5788888888775  47777776665333333444455543221 1111111  0112257


Q ss_pred             CeEEEecCCCchHH-HHHHhcccCcEEEEEe
Q psy2961          81 PKLALNCVGGNSAT-NLLRTLVSKGVMVTYG  110 (202)
Q Consensus        81 ~d~vid~~g~~~~~-~~~~~l~~~G~~v~~g  110 (202)
                      +|+|+-+...+... .+++.|++||+++..-
T Consensus       146 fD~I~~~~~~~~~~~~l~~~LkpgG~lvi~~  176 (212)
T PRK13942        146 YDRIYVTAAGPDIPKPLIEQLKDGGIMVIPV  176 (212)
T ss_pred             cCEEEECCCcccchHHHHHhhCCCcEEEEEE
Confidence            99987655444443 4788999999988754

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.69  E-value=0.00038  Score=52.27  Aligned_cols=80  Identities=11%  Similarity=0.195  Sum_probs=49.5

Q ss_pred             CCCEEEEeCC--CcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHH-HhcCCceEe--C---hhHHHh-HHHhhC-CC
Q psy2961          10 PGDVVIQNGA--NSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGADYVF--T---EEELRN-ISRDAS-IP   79 (202)
Q Consensus        10 ~g~~VlI~g~--~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~v~--~---~~~~~~-~~~~~~-~~   79 (202)
                      .|.+++|+|+  ++++|.++++.+...|++|+.+.+.+ ...+..+.+ ++++....+  |   +++... +.+... .+
T Consensus         5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   83 (261)
T PRK08690          5 QGKKILITGMISERSIAYGIAKACREQGAELAFTYVVD-KLEERVRKMAAELDSELVFRCDVASDDEINQVFADLGKHWD   83 (261)
T ss_pred             CCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcH-HHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHHHhC
Confidence            5689999996  56999999999999999988765442 212223333 233432222  2   344443 333221 15


Q ss_pred             CCeEEEecCCC
Q psy2961          80 KPKLALNCVGG   90 (202)
Q Consensus        80 ~~d~vid~~g~   90 (202)
                      ++|++|+++|-
T Consensus        84 ~iD~lVnnAG~   94 (261)
T PRK08690         84 GLDGLVHSIGF   94 (261)
T ss_pred             CCcEEEECCcc
Confidence            79999998863

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=97.69  E-value=0.00056  Score=51.05  Aligned_cols=81  Identities=22%  Similarity=0.301  Sum_probs=52.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceE-e--C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-F--T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v-~--~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .+.+|+|.|+++++|..+++.+...|++++.++++.+......+.++..+.+.. +  |   .++... +..... -.++
T Consensus        10 ~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~~   89 (255)
T PRK06113         10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSKLGKV   89 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            478999999999999999998888999998888776532222233333343321 1  2   233333 332211 1468


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.+.|.
T Consensus        90 d~li~~ag~   98 (255)
T PRK06113         90 DILVNNAGG   98 (255)
T ss_pred             CEEEECCCC
Confidence            999998873

>PRK13656 trans-2-enoyl-CoA reductase; Provisional

Probab=97.68  E-value=0.0037  Score=49.27  Aligned_cols=82  Identities=16%  Similarity=0.197  Sum_probs=49.9

Q ss_pred             CCCCEEEEeCCCcHHHHH--HHHHHHHCCCcEEEEecCcccHHH------------HHHHHHhcCCceE-e--C---hhH
Q psy2961           9 SPGDVVIQNGANSACGQN--VIQIARHWGLKTINIVRNRDDIDK------------LKSYLKSLGADYV-F--T---EEE   68 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~--~i~la~~~g~~vi~~~~~~~~~~~------------~~~~~~~lg~~~v-~--~---~~~   68 (202)
                      ..|+++||+|+++++|++  +++.+ ..|++++++....+....            -.+.++++|.... +  |   .+.
T Consensus        39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E~  117 (398)
T PRK13656         39 NGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDEI  117 (398)
T ss_pred             CCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHHH
Confidence            446799999999999999  56666 899998887643221110            1234455665422 2  2   233


Q ss_pred             HHh-HHHhhC-CCCCeEEEecCCCc
Q psy2961          69 LRN-ISRDAS-IPKPKLALNCVGGN   91 (202)
Q Consensus        69 ~~~-~~~~~~-~~~~d~vid~~g~~   91 (202)
                      ... +.+... -+++|+++.+++.+
T Consensus       118 v~~lie~I~e~~G~IDiLVnSaA~~  142 (398)
T PRK13656        118 KQKVIELIKQDLGQVDLVVYSLASP  142 (398)
T ss_pred             HHHHHHHHHHhcCCCCEEEECCccC
Confidence            333 222211 15699999999866

>PRK12829 short chain dehydrogenase; Provisional

Probab=97.68  E-value=0.00038  Score=52.11  Aligned_cols=82  Identities=11%  Similarity=0.046  Sum_probs=52.3

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHH-HhcCCc--eEe--C---hhHHHh-HHHhh
Q psy2961           6 NSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGAD--YVF--T---EEELRN-ISRDA   76 (202)
Q Consensus         6 ~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~--~v~--~---~~~~~~-~~~~~   76 (202)
                      .+.-++.++||+|++|++|..+++.+...|++|+.+.++++.    .+.+ ......  .++  |   +..+.. +.+..
T Consensus         6 ~~~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   81 (264)
T PRK12829          6 LKPLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAA----LAATAARLPGAKVTATVADVADPAQVERVFDTAV   81 (264)
T ss_pred             hhccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHhcCceEEEEccCCCHHHHHHHHHHHH
Confidence            344578899999999999999999999999998888876543    2222 222211  111  2   233322 22211


Q ss_pred             C-CCCCeEEEecCCCc
Q psy2961          77 S-IPKPKLALNCVGGN   91 (202)
Q Consensus        77 ~-~~~~d~vid~~g~~   91 (202)
                      . -.++|+||.+.|..
T Consensus        82 ~~~~~~d~vi~~ag~~   97 (264)
T PRK12829         82 ERFGGLDVLVNNAGIA   97 (264)
T ss_pred             HHhCCCCEEEECCCCC
Confidence            1 14799999988754

>PRK08278 short chain dehydrogenase; Provisional

Probab=97.68  E-value=0.00067  Score=51.26  Aligned_cols=81  Identities=12%  Similarity=0.233  Sum_probs=51.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCccc-------HHHHHHHHHhcCCceEe---C---hhHHHh-HHHh
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD-------IDKLKSYLKSLGADYVF---T---EEELRN-ISRD   75 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~-------~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~   75 (202)
                      .+.+++|+|+++++|..+++.+...|++|+.+.++.+.       ..+..+.++..+.....   |   +++... +.+.
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~   84 (273)
T PRK08278          5 SGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVAKA   84 (273)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHH
Confidence            46799999999999999999888899999988876542       11112233344443221   3   233333 2222


Q ss_pred             hC-CCCCeEEEecCCC
Q psy2961          76 AS-IPKPKLALNCVGG   90 (202)
Q Consensus        76 ~~-~~~~d~vid~~g~   90 (202)
                      .. -+.+|++|.++|.
T Consensus        85 ~~~~g~id~li~~ag~  100 (273)
T PRK08278         85 VERFGGIDICVNNASA  100 (273)
T ss_pred             HHHhCCCCEEEECCCC
Confidence            11 1469999999874

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.68  E-value=0.00049  Score=51.65  Aligned_cols=79  Identities=14%  Similarity=0.202  Sum_probs=50.1

Q ss_pred             CCCEEEEeCCCc--HHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHH-HhcCCceEe--C---hhHHHh-HHHhhC-CC
Q psy2961          10 PGDVVIQNGANS--ACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGADYVF--T---EEELRN-ISRDAS-IP   79 (202)
Q Consensus        10 ~g~~VlI~g~~~--~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~v~--~---~~~~~~-~~~~~~-~~   79 (202)
                      .|.+++|+|+++  ++|.++++.+...|++|+.+.+++ ...+..+.+ +++|....+  |   +++... +.+... -+
T Consensus         7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~-~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~~~g   85 (260)
T PRK06603          7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSE-VLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEKWG   85 (260)
T ss_pred             CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCch-HHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHHHcC
Confidence            578999999987  899999988888999988876553 222233333 333443322  3   334433 333222 14


Q ss_pred             CCeEEEecCC
Q psy2961          80 KPKLALNCVG   89 (202)
Q Consensus        80 ~~d~vid~~g   89 (202)
                      .+|++++++|
T Consensus        86 ~iDilVnnag   95 (260)
T PRK06603         86 SFDFLLHGMA   95 (260)
T ss_pred             CccEEEEccc
Confidence            6999999886

>PRK06197 short chain dehydrogenase; Provisional

Probab=97.67  E-value=0.00052  Score=52.71  Aligned_cols=80  Identities=24%  Similarity=0.304  Sum_probs=50.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhc--CCce-Ee--C---hhHHHh-HHHhhC-CC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL--GADY-VF--T---EEELRN-ISRDAS-IP   79 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~l--g~~~-v~--~---~~~~~~-~~~~~~-~~   79 (202)
                      .|.+|+|.|+++++|..+++.+...|++|+.++++.+...+..+.+.+.  +... ++  |   .++... +.+... .+
T Consensus        15 ~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~   94 (306)
T PRK06197         15 SGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAYP   94 (306)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhCC
Confidence            5789999999999999999988888999998888765422222233221  1111 11  2   233333 333221 24


Q ss_pred             CCeEEEecCC
Q psy2961          80 KPKLALNCVG   89 (202)
Q Consensus        80 ~~d~vid~~g   89 (202)
                      ++|++|.++|
T Consensus        95 ~iD~li~nAg  104 (306)
T PRK06197         95 RIDLLINNAG  104 (306)
T ss_pred             CCCEEEECCc
Confidence            6999999887

>PRK08703 short chain dehydrogenase; Provisional

Probab=97.67  E-value=0.00038  Score=51.37  Aligned_cols=80  Identities=20%  Similarity=0.365  Sum_probs=51.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCc---eE-eC-----hhHHHh----HHHhh
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD---YV-FT-----EEELRN----ISRDA   76 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~---~v-~~-----~~~~~~----~~~~~   76 (202)
                      ++.+++|+|++|++|..+++.+...|++|+.+.++++..++..+.+.+.+..   .+ .|     ..++..    +.+..
T Consensus         5 ~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~~~   84 (239)
T PRK08703          5 SDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAEAT   84 (239)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHHHh
Confidence            4679999999999999999999999999999888876433333333333321   11 12     122222    22222


Q ss_pred             CCCCCeEEEecCCC
Q psy2961          77 SIPKPKLALNCVGG   90 (202)
Q Consensus        77 ~~~~~d~vid~~g~   90 (202)
                      . ..+|++|.++|.
T Consensus        85 ~-~~id~vi~~ag~   97 (239)
T PRK08703         85 Q-GKLDGIVHCAGY   97 (239)
T ss_pred             C-CCCCEEEEeccc
Confidence            1 368999999884

>PRK12743 oxidoreductase; Provisional

Probab=97.66  E-value=0.00052  Score=51.28  Aligned_cols=80  Identities=13%  Similarity=0.162  Sum_probs=50.7

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCccc-HHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCCC
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD-IDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~-~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~~   81 (202)
                      +.+|+|+|+++++|..+++.+...|++|+.+.+++.. ..+..+.++..+....+   |   +.+... +.+... .+++
T Consensus         2 ~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   81 (256)
T PRK12743          2 AQVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLGRI   81 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            5689999999999999999999999999887655432 11222344445543221   2   233333 222211 1468


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.+.|.
T Consensus        82 d~li~~ag~   90 (256)
T PRK12743         82 DVLVNNAGA   90 (256)
T ss_pred             CEEEECCCC
Confidence            999998874

>PRK06180 short chain dehydrogenase; Provisional

Probab=97.66  E-value=0.00038  Score=52.67  Aligned_cols=77  Identities=14%  Similarity=0.182  Sum_probs=50.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhc-CCce-Ee--C---hhHHHh-HHHhhC-CCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL-GADY-VF--T---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~l-g~~~-v~--~---~~~~~~-~~~~~~-~~~   80 (202)
                      .+.++||+|++|++|..+++.+...|++|+.+.++.+    +.+.+.+. +... .+  |   .+.... +..... -++
T Consensus         3 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~----~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~   78 (277)
T PRK06180          3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEA----ARADFEALHPDRALARLLDVTDFDAIDAVVADAEATFGP   78 (277)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHH----HHHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            3578999999999999999998889999999888765    23333332 2211 11  2   233333 332211 146


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|++|.++|.
T Consensus        79 ~d~vv~~ag~   88 (277)
T PRK06180         79 IDVLVNNAGY   88 (277)
T ss_pred             CCEEEECCCc
Confidence            8999999875

>PRK05599 hypothetical protein; Provisional

Probab=97.66  E-value=0.00044  Score=51.41  Aligned_cols=77  Identities=18%  Similarity=0.228  Sum_probs=49.2

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCce--Ee--C---hhHHHh-HHHhhC-CCCCeE
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY--VF--T---EEELRN-ISRDAS-IPKPKL   83 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~--v~--~---~~~~~~-~~~~~~-~~~~d~   83 (202)
                      +++|+|+++++|.++++... .|++|+.+.++++..++..+.+++.|.+.  .+  |   .++... +.+... .+++|+
T Consensus         2 ~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~   80 (246)
T PRK05599          2 SILILGGTSDIAGEIATLLC-HGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAGEISL   80 (246)
T ss_pred             eEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcCCCCE
Confidence            68999999999999887665 59999988887765444344455555331  22  2   233333 322211 247899


Q ss_pred             EEecCCC
Q psy2961          84 ALNCVGG   90 (202)
Q Consensus        84 vid~~g~   90 (202)
                      +|.+.|.
T Consensus        81 lv~nag~   87 (246)
T PRK05599         81 AVVAFGI   87 (246)
T ss_pred             EEEecCc
Confidence            9988874

>PRK08267 short chain dehydrogenase; Provisional

Probab=97.66  E-value=0.00043  Score=51.77  Aligned_cols=75  Identities=16%  Similarity=0.138  Sum_probs=49.7

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHH-HhcC-Cc-eEe--C---hhHHHh-HHHhhC--CCC
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLG-AD-YVF--T---EEELRN-ISRDAS--IPK   80 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg-~~-~v~--~---~~~~~~-~~~~~~--~~~   80 (202)
                      .++||+|++|++|..+++.+...|++|+.+.++.+.    .+.+ ..++ .. .++  |   +.++.. +.....  .++
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~   77 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAG----LAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGR   77 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHH----HHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            479999999999999999888899999988877653    3333 2232 11 111  2   333444 333211  357


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|++|.++|.
T Consensus        78 id~vi~~ag~   87 (260)
T PRK08267         78 LDVLFNNAGI   87 (260)
T ss_pred             CCEEEECCCC
Confidence            9999999974

>PRK07024 short chain dehydrogenase; Provisional

Probab=97.66  E-value=0.00042  Score=51.78  Aligned_cols=77  Identities=17%  Similarity=0.155  Sum_probs=48.7

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcC----CceEe-C---hhHHHh-HHHhhC-CCC
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG----ADYVF-T---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg----~~~v~-~---~~~~~~-~~~~~~-~~~   80 (202)
                      +.+|+|+|++|++|..+++.+...|++|+.+.++++...   +..+++.    ...+. |   .++..+ +.+... .+.
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~---~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~   78 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQ---AFAARLPKAARVSVYAADVRDADALAAAAADFIAAHGL   78 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH---HHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence            468999999999999999988889999888887765321   2222221    11111 2   233333 333221 145


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|++|.++|.
T Consensus        79 id~lv~~ag~   88 (257)
T PRK07024         79 PDVVIANAGI   88 (257)
T ss_pred             CCEEEECCCc
Confidence            8999998873

>PRK09186 flagellin modification protein A; Provisional

Probab=97.66  E-value=0.00051  Score=51.19  Aligned_cols=80  Identities=20%  Similarity=0.306  Sum_probs=51.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHH-hcCCc---e-EeC---hhHHHh-HHHhhC-CC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK-SLGAD---Y-VFT---EEELRN-ISRDAS-IP   79 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~-~lg~~---~-v~~---~~~~~~-~~~~~~-~~   79 (202)
                      .+.+|+|+|+++++|..++..+...|++|+.+.++++...+..+.+. .++..   . ..|   ++++.. +.+... -+
T Consensus         3 ~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~   82 (256)
T PRK09186          3 KGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKYG   82 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHcC
Confidence            47899999999999999999999999999998877654222222222 22222   1 113   333333 332211 14


Q ss_pred             CCeEEEecCC
Q psy2961          80 KPKLALNCVG   89 (202)
Q Consensus        80 ~~d~vid~~g   89 (202)
                      ++|++|.+.+
T Consensus        83 ~id~vi~~A~   92 (256)
T PRK09186         83 KIDGAVNCAY   92 (256)
T ss_pred             CccEEEECCc
Confidence            6899999885

>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []

Probab=97.66  E-value=0.0018  Score=42.98  Aligned_cols=94  Identities=18%  Similarity=0.347  Sum_probs=61.6

Q ss_pred             EEEeCCCcHHHHHHHHHHHHCC--CcEEEEecCcccHHHHHHHHHhcCCceEeC--hh---HHHh---------------
Q psy2961          14 VIQNGANSACGQNVIQIARHWG--LKTINIVRNRDDIDKLKSYLKSLGADYVFT--EE---ELRN---------------   71 (202)
Q Consensus        14 VlI~g~~~~vG~~~i~la~~~g--~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~--~~---~~~~---------------   71 (202)
                      |.|+|++|++|..+..+.+...  +++++.+...+ .++..++++++.+..+.-  +.   .+..               
T Consensus         1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~~n-~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G~   79 (129)
T PF02670_consen    1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAGSN-IEKLAEQAREFKPKYVVIADEEAYEELKKALPSKGPGIEVLSGP   79 (129)
T ss_dssp             EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEESST-HHHHHHHHHHHT-SEEEESSHHHHHHHHHHHHHTTSSSEEEESH
T ss_pred             CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcCCC-HHHHHHHHHHhCCCEEEEcCHHHHHHHHHHhhhcCCCCEEEeCh
Confidence            6799999999999999999987  68888777553 455678888898887662  21   1111               


Q ss_pred             --HHHhhCCCCCeEEEecCCCchHHH-HHHhcccCcEEEE
Q psy2961          72 --ISRDASIPKPKLALNCVGGNSATN-LLRTLVSKGVMVT  108 (202)
Q Consensus        72 --~~~~~~~~~~d~vid~~g~~~~~~-~~~~l~~~G~~v~  108 (202)
                        +.+.....++|+|+.++.+-.... .+..++.+=++.+
T Consensus        80 ~~l~~~~~~~~~D~vv~Ai~G~aGL~pt~~Ai~~gk~iaL  119 (129)
T PF02670_consen   80 EGLEELAEEPEVDIVVNAIVGFAGLKPTLAAIKAGKDIAL  119 (129)
T ss_dssp             HHHHHHHTHTT-SEEEE--SSGGGHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHhcCCCCCEEEEeCcccchHHHHHHHHHCCCeEEE
Confidence              223333367899999887665544 6777776655443

In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.65  E-value=0.00063  Score=51.44  Aligned_cols=81  Identities=16%  Similarity=0.142  Sum_probs=51.5

Q ss_pred             CCCCCEEEEeCCC--cHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHH-HhcCCceEe--C---hhHHHh-HHHhhC-
Q psy2961           8 LSPGDVVIQNGAN--SACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGADYVF--T---EEELRN-ISRDAS-   77 (202)
Q Consensus         8 ~~~g~~VlI~g~~--~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~v~--~---~~~~~~-~~~~~~-   77 (202)
                      +-.|.++||+|++  +++|.++++.+...|++|+.+.+++ ...++.+.+ ++++....+  |   +++... +.+... 
T Consensus         7 ~~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~-~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   85 (272)
T PRK08159          7 LMAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGD-ALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEKK   85 (272)
T ss_pred             cccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCch-HHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHHh
Confidence            3457899999996  7999999999999999988776543 222233333 344532222  2   334443 333222 


Q ss_pred             CCCCeEEEecCC
Q psy2961          78 IPKPKLALNCVG   89 (202)
Q Consensus        78 ~~~~d~vid~~g   89 (202)
                      -+.+|++|.++|
T Consensus        86 ~g~iD~lv~nAG   97 (272)
T PRK08159         86 WGKLDFVVHAIG   97 (272)
T ss_pred             cCCCcEEEECCc
Confidence            246999999886

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=97.65  E-value=0.00073  Score=47.76  Aligned_cols=87  Identities=16%  Similarity=0.255  Sum_probs=60.0

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhCCCCCeEEEec
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNC   87 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~~~~~d~vid~   87 (202)
                      -.|.+|.|+|.| .+|..+++.++.+|++|++..++...    .......+...    .++.+ +.      ..|+|+.+
T Consensus        34 l~g~tvgIiG~G-~IG~~vA~~l~~fG~~V~~~d~~~~~----~~~~~~~~~~~----~~l~ell~------~aDiv~~~   98 (178)
T PF02826_consen   34 LRGKTVGIIGYG-RIGRAVARRLKAFGMRVIGYDRSPKP----EEGADEFGVEY----VSLDELLA------QADIVSLH   98 (178)
T ss_dssp             STTSEEEEESTS-HHHHHHHHHHHHTT-EEEEEESSCHH----HHHHHHTTEEE----SSHHHHHH------H-SEEEE-
T ss_pred             cCCCEEEEEEEc-CCcCeEeeeeecCCceeEEecccCCh----hhhccccccee----eehhhhcc------hhhhhhhh
Confidence            468999999999 99999999999999999999887752    22244444422    23333 32      35888876


Q ss_pred             CCC-ch----H-HHHHHhcccCcEEEEEe
Q psy2961          88 VGG-NS----A-TNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        88 ~g~-~~----~-~~~~~~l~~~G~~v~~g  110 (202)
                      ... +.    + ...+..|+++..+|.++
T Consensus        99 ~plt~~T~~li~~~~l~~mk~ga~lvN~a  127 (178)
T PF02826_consen   99 LPLTPETRGLINAEFLAKMKPGAVLVNVA  127 (178)
T ss_dssp             SSSSTTTTTSBSHHHHHTSTTTEEEEESS
T ss_pred             hccccccceeeeeeeeeccccceEEEecc
Confidence            652 22    1 23789999999999876

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK05875 short chain dehydrogenase; Provisional

Probab=97.64  E-value=0.00045  Score=52.17  Aligned_cols=80  Identities=15%  Similarity=0.222  Sum_probs=51.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcC--Cc-eEe--C---hhHHHh-HHHhhC-CC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG--AD-YVF--T---EEELRN-ISRDAS-IP   79 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg--~~-~v~--~---~~~~~~-~~~~~~-~~   79 (202)
                      ++.++||+|++|++|..+++.+...|++|+.+.++.+...+..+.+...+  .. .++  |   +++... +.+... .+
T Consensus         6 ~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   85 (276)
T PRK05875          6 QDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWHG   85 (276)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            36899999999999999999999999999988877653222223333221  11 111  2   333333 333221 24


Q ss_pred             CCeEEEecCC
Q psy2961          80 KPKLALNCVG   89 (202)
Q Consensus        80 ~~d~vid~~g   89 (202)
                      ++|++|.++|
T Consensus        86 ~~d~li~~ag   95 (276)
T PRK05875         86 RLHGVVHCAG   95 (276)
T ss_pred             CCCEEEECCC
Confidence            6899999887

>PRK07775 short chain dehydrogenase; Provisional

Probab=97.63  E-value=0.00071  Score=51.14  Aligned_cols=81  Identities=12%  Similarity=0.197  Sum_probs=51.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhh-CCCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDA-SIPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~-~~~~~   81 (202)
                      ++.+++|+|++|++|..+++.+...|++|+.++++.+...+..+.++..+.....   |   +++... +.+.. .-+++
T Consensus         9 ~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   88 (274)
T PRK07775          9 DRRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEEALGEI   88 (274)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence            3468999999999999999988889999888887665322222233334433211   2   333333 33221 11468


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.++|.
T Consensus        89 d~vi~~Ag~   97 (274)
T PRK07775         89 EVLVSGAGD   97 (274)
T ss_pred             CEEEECCCc
Confidence            999998874

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=97.63  E-value=0.00078  Score=50.36  Aligned_cols=80  Identities=20%  Similarity=0.329  Sum_probs=51.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceE---eC---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FT---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v---~~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .+.+++|+|+++++|..+++.+...|++|+.+.+++. ..+..+.+...+.+..   .|   +++... +.+... .+++
T Consensus         7 ~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   85 (260)
T PRK12823          7 AGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSEL-VHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEAFGRI   85 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchH-HHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHcCCC
Confidence            4689999999999999999999899999888776542 2222233334443321   12   233333 333221 2469


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.++|.
T Consensus        86 d~lv~nAg~   94 (260)
T PRK12823         86 DVLINNVGG   94 (260)
T ss_pred             eEEEECCcc
Confidence            999999873

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=97.63  E-value=0.00068  Score=50.26  Aligned_cols=80  Identities=15%  Similarity=0.260  Sum_probs=51.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCce-Ee--C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-VF--T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-v~--~---~~~~~~-~~~~~~-~~~~   81 (202)
                      ++.++||+|++|++|..+++.+...|++|+.+.++.+...+..+.+++.+... ++  |   .+.... +.+... -.++
T Consensus         2 ~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~   81 (250)
T TIGR03206         2 KDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALGPV   81 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            46899999999999999999999999999888877654222223333333322 11  2   233333 332211 1468


Q ss_pred             eEEEecCC
Q psy2961          82 KLALNCVG   89 (202)
Q Consensus        82 d~vid~~g   89 (202)
                      |++|.+.|
T Consensus        82 d~vi~~ag   89 (250)
T TIGR03206        82 DVLVNNAG   89 (250)
T ss_pred             CEEEECCC
Confidence            99999987

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=97.63  E-value=0.00071  Score=50.47  Aligned_cols=79  Identities=15%  Similarity=0.254  Sum_probs=51.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceE-e--C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-F--T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v-~--~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .|.+++|+|+++++|.++++.+...|++|+.+.....  .+..+.+++++.... +  |   .++... +.+... .+++
T Consensus         9 ~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~   86 (253)
T PRK08993          9 EGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEP--TETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAEFGHI   86 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcch--HHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            4789999999999999999999999999887654432  223344444543211 1  2   333333 333221 2469


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.++|.
T Consensus        87 D~li~~Ag~   95 (253)
T PRK08993         87 DILVNNAGL   95 (253)
T ss_pred             CEEEECCCC
Confidence            999999874

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=97.62  E-value=0.00039  Score=55.81  Aligned_cols=76  Identities=18%  Similarity=0.257  Sum_probs=51.9

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEe
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALN   86 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid   86 (202)
                      ..++++|+|+|+| .+|..+++.++..|+ +++++.++.+.   ..+.++.+|.. .++..++.+   ..  .++|+||+
T Consensus       177 ~l~~~~VlViGaG-~iG~~~a~~L~~~G~~~V~v~~rs~~r---a~~la~~~g~~-~i~~~~l~~---~l--~~aDvVi~  246 (417)
T TIGR01035       177 SLKGKKALLIGAG-EMGELVAKHLLRKGVGKILIANRTYER---AEDLAKELGGE-AVKFEDLEE---YL--AEADIVIS  246 (417)
T ss_pred             CccCCEEEEECCh-HHHHHHHHHHHHCCCCEEEEEeCCHHH---HHHHHHHcCCe-EeeHHHHHH---HH--hhCCEEEE
Confidence            3568999999997 999999999999995 45555554431   23455667764 334444433   11  36899999


Q ss_pred             cCCCchH
Q psy2961          87 CVGGNSA   93 (202)
Q Consensus        87 ~~g~~~~   93 (202)
                      |++.+..
T Consensus       247 aT~s~~~  253 (417)
T TIGR01035       247 STGAPHP  253 (417)
T ss_pred             CCCCCCc
Confidence            9987653

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.62  E-value=0.00083  Score=49.88  Aligned_cols=104  Identities=13%  Similarity=0.221  Sum_probs=62.2

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc-cHHHHHHHHHhcCCceE-e--C---hhHHHh-HHHhhC-CCCC
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD-DIDKLKSYLKSLGADYV-F--T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~-~~~~~~~~~~~lg~~~v-~--~---~~~~~~-~~~~~~-~~~~   81 (202)
                      +.+|||.|++|++|..+++-+...|++++.++++.. ........+++.+.... +  |   ..+... +.+... -.++
T Consensus         6 ~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   85 (252)
T PRK06077          6 DKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCETLAKATIDRYGVA   85 (252)
T ss_pred             CcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHHHHHcCCC
Confidence            579999999999999999888889999877765432 21112233344443321 1  2   222222 222111 1478


Q ss_pred             eEEEecCCCch--------------------------HHHHHHhcccCcEEEEEeccCC
Q psy2961          82 KLALNCVGGNS--------------------------ATNLLRTLVSKGVMVTYGGMSR  114 (202)
Q Consensus        82 d~vid~~g~~~--------------------------~~~~~~~l~~~G~~v~~g~~~~  114 (202)
                      |++|.++|...                          ...+++.++..|+++.++....
T Consensus        86 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~  144 (252)
T PRK06077         86 DILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAG  144 (252)
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhc
Confidence            99999997310                          0112445567789999886543

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=97.62  E-value=0.00041  Score=44.84  Aligned_cols=96  Identities=18%  Similarity=0.232  Sum_probs=58.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHH-HCCCcEEEEecCcccHHHHHHHHHhcCC-ceE-eChhHHHhHHHhhCCCCCeEEEe
Q psy2961          10 PGDVVIQNGANSACGQNVIQIAR-HWGLKTINIVRNRDDIDKLKSYLKSLGA-DYV-FTEEELRNISRDASIPKPKLALN   86 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~-~~g~~vi~~~~~~~~~~~~~~~~~~lg~-~~v-~~~~~~~~~~~~~~~~~~d~vid   86 (202)
                      ||.+||-.|+|  .|..++.+++ ..+++++++--+++..+...+.+.+.+. +.+ +-..|+ . .......++|+|+.
T Consensus         1 p~~~vLDlGcG--~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~-~~~~~~~~~D~v~~   76 (112)
T PF12847_consen    1 PGGRVLDLGCG--TGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-E-FDPDFLEPFDLVIC   76 (112)
T ss_dssp             TTCEEEEETTT--TSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-H-GGTTTSSCEEEEEE
T ss_pred             CCCEEEEEcCc--CCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-c-cCcccCCCCCEEEE
Confidence            68899999997  5889999999 5788988888777643322333322222 111 111222 1 11111256999998


Q ss_pred             cC-CCc----h------HHHHHHhcccCcEEEEE
Q psy2961          87 CV-GGN----S------ATNLLRTLVSKGVMVTY  109 (202)
Q Consensus        87 ~~-g~~----~------~~~~~~~l~~~G~~v~~  109 (202)
                      .. ...    .      +..+.+.|+|+|+++.-
T Consensus        77 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~  110 (112)
T PF12847_consen   77 SGFTLHFLLPLDERRRVLERIRRLLKPGGRLVIN  110 (112)
T ss_dssp             CSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence            77 222    1      23467899999999863

...

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=97.61  E-value=0.001  Score=52.95  Aligned_cols=104  Identities=19%  Similarity=0.289  Sum_probs=61.7

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHH---HHHHHHhc-CCceEe-C---hhHHHh-HHHhhCC
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDK---LKSYLKSL-GADYVF-T---EEELRN-ISRDASI   78 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~---~~~~~~~l-g~~~v~-~---~~~~~~-~~~~~~~   78 (202)
                      ...+.+|||+|++|.+|..+++.+...|.+|++++++.+....   ..+..... +...+. |   ++++.. +...  +
T Consensus        57 ~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--~  134 (390)
T PLN02657         57 EPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSE--G  134 (390)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHh--C
Confidence            3557799999999999999999988899999999887642110   01111112 333332 3   233333 3221  1


Q ss_pred             CCCeEEEecCCCch-------------HHHHHHhcccC--cEEEEEeccC
Q psy2961          79 PKPKLALNCVGGNS-------------ATNLLRTLVSK--GVMVTYGGMS  113 (202)
Q Consensus        79 ~~~d~vid~~g~~~-------------~~~~~~~l~~~--G~~v~~g~~~  113 (202)
                      .++|+||+|++...             ...+++.+...  +++|.++...
T Consensus       135 ~~~D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iSS~~  184 (390)
T PLN02657        135 DPVDVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVLLSAIC  184 (390)
T ss_pred             CCCcEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEEEeecc
Confidence            26999999886421             11234444333  5788877543

>PRK06841 short chain dehydrogenase; Provisional

Probab=97.60  E-value=0.00061  Score=50.74  Aligned_cols=77  Identities=16%  Similarity=0.216  Sum_probs=49.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCce--E--eC---hhHHHh-HHHhhC-CCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY--V--FT---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~--v--~~---~~~~~~-~~~~~~-~~~   80 (202)
                      .+.+|||+|+++++|..+++.+...|++|+.+.++.+.    .+...++....  .  .|   +++... +.+... ..+
T Consensus        14 ~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~----~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   89 (255)
T PRK06841         14 SGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDV----AEVAAQLLGGNAKGLVCDVSDSQSVEAAVAAVISAFGR   89 (255)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            47899999999999999999988899999888876542    22233322111  1  12   233333 222211 146


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|++|.++|.
T Consensus        90 ~d~vi~~ag~   99 (255)
T PRK06841         90 IDILVNSAGV   99 (255)
T ss_pred             CCEEEECCCC
Confidence            8999999874

>PRK05717 oxidoreductase; Validated

Probab=97.60  E-value=0.00061  Score=50.85  Aligned_cols=78  Identities=14%  Similarity=0.141  Sum_probs=50.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceE-e--C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-F--T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v-~--~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .|.+|+|+|++|++|..+++.+...|++|+.+.++.+.   ..+..+.++.... +  |   ..+... +.+... -+.+
T Consensus         9 ~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i   85 (255)
T PRK05717          9 NGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRER---GSKVAKALGENAWFIAMDVADEAQVAAGVAEVLGQFGRL   85 (255)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHH---HHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            47899999999999999999998899998887766542   1222334443211 1  2   233333 333221 1468


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.+.|.
T Consensus        86 d~li~~ag~   94 (255)
T PRK05717         86 DALVCNAAI   94 (255)
T ss_pred             CEEEECCCc
Confidence            999998874

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.59  E-value=0.00061  Score=49.30  Aligned_cols=101  Identities=15%  Similarity=0.149  Sum_probs=63.5

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCC--CcEEEEecCcccHHHHHHHHHhcCCc---eEeChhHHHh-HHHhhC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWG--LKTINIVRNRDDIDKLKSYLKSLGAD---YVFTEEELRN-ISRDAS   77 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g--~~vi~~~~~~~~~~~~~~~~~~lg~~---~v~~~~~~~~-~~~~~~   77 (202)
                      +..+++++++||-.|+|  .|..++.+++..+  .+|+++..+++......+.++.++..   .++ ..|..+ +..   
T Consensus        66 ~~l~~~~~~~VLDiG~G--sG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~-~~d~~~~~~~---  139 (205)
T PRK13944         66 ELIEPRPGMKILEVGTG--SGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVY-HGDGKRGLEK---  139 (205)
T ss_pred             HhcCCCCCCEEEEECcC--ccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE-ECCcccCCcc---
Confidence            34567889999999987  4778888888764  57888777765322223344445542   122 122222 211   


Q ss_pred             CCCCeEEEecCCCchHH-HHHHhcccCcEEEEEe
Q psy2961          78 IPKPKLALNCVGGNSAT-NLLRTLVSKGVMVTYG  110 (202)
Q Consensus        78 ~~~~d~vid~~g~~~~~-~~~~~l~~~G~~v~~g  110 (202)
                      ...+|+|+-+....... .+.+.|++||+++...
T Consensus       140 ~~~fD~Ii~~~~~~~~~~~l~~~L~~gG~lvi~~  173 (205)
T PRK13944        140 HAPFDAIIVTAAASTIPSALVRQLKDGGVLVIPV  173 (205)
T ss_pred             CCCccEEEEccCcchhhHHHHHhcCcCcEEEEEE
Confidence            25799988766555444 4789999999998743

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=97.57  E-value=0.00087  Score=49.83  Aligned_cols=80  Identities=16%  Similarity=0.193  Sum_probs=50.3

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCce--E-eC---hhHHHh-HHHhh-CCCCCe
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY--V-FT---EEELRN-ISRDA-SIPKPK   82 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~--v-~~---~~~~~~-~~~~~-~~~~~d   82 (202)
                      +.++||+|++|++|..++..+...|++|+.++++.+......+.+...+...  + .|   ++++.. +.+.. ...++|
T Consensus         1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   80 (255)
T TIGR01963         1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGGLD   80 (255)
T ss_pred             CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCCCC
Confidence            3589999999999999998888899999998887653222222223333321  1 12   333333 33321 124689


Q ss_pred             EEEecCCC
Q psy2961          83 LALNCVGG   90 (202)
Q Consensus        83 ~vid~~g~   90 (202)
                      ++|.+.+.
T Consensus        81 ~vi~~a~~   88 (255)
T TIGR01963        81 ILVNNAGI   88 (255)
T ss_pred             EEEECCCC
Confidence            99988864

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>KOG1502|consensus

Probab=97.57  E-value=0.00061  Score=52.19  Aligned_cols=78  Identities=18%  Similarity=0.233  Sum_probs=55.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcC-Cc---eEe--ChhHHHhHHHhhCCCCCeE
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG-AD---YVF--TEEELRNISRDASIPKPKL   83 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg-~~---~v~--~~~~~~~~~~~~~~~~~d~   83 (202)
                      .+.+|+|+||+|-+|...+..+...|++|.+++|++++ .++.+.++++. +.   .++  |-.+...+.+..  .|.|.
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~-~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai--~gcdg   81 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPED-EKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAI--DGCDG   81 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcch-hhhHHHHHhcccCcccceEEeccccccchHHHHH--hCCCE
Confidence            67899999999999999999999999999999999986 33445677764 22   111  111111133333  57899


Q ss_pred             EEecCCC
Q psy2961          84 ALNCVGG   90 (202)
Q Consensus        84 vid~~g~   90 (202)
                      ||.++..
T Consensus        82 VfH~Asp   88 (327)
T KOG1502|consen   82 VFHTASP   88 (327)
T ss_pred             EEEeCcc
Confidence            9988763

>KOG1200|consensus

Probab=97.56  E-value=0.00065  Score=48.00  Aligned_cols=76  Identities=20%  Similarity=0.353  Sum_probs=52.5

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCC--ceE-e--C---hhHHHh-HHHhhCC-CC
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA--DYV-F--T---EEELRN-ISRDASI-PK   80 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~--~~v-~--~---~~~~~~-~~~~~~~-~~   80 (202)
                      ...++|.|+++++|.+..|.....|+++.+.....+.   ..+.++.++.  ++. +  |   .++... +.+.... +.
T Consensus        14 sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~---A~ata~~L~g~~~h~aF~~DVS~a~~v~~~l~e~~k~~g~   90 (256)
T KOG1200|consen   14 SKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAA---AEATAGDLGGYGDHSAFSCDVSKAHDVQNTLEEMEKSLGT   90 (256)
T ss_pred             cceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhh---HHHHHhhcCCCCccceeeeccCcHHHHHHHHHHHHHhcCC
Confidence            3567899999999999999999999998887766543   4555666655  222 1  2   334333 3333221 36


Q ss_pred             CeEEEecCC
Q psy2961          81 PKLALNCVG   89 (202)
Q Consensus        81 ~d~vid~~g   89 (202)
                      ++++++|.|
T Consensus        91 psvlVncAG   99 (256)
T KOG1200|consen   91 PSVLVNCAG   99 (256)
T ss_pred             CcEEEEcCc
Confidence            899999998

>PRK07102 short chain dehydrogenase; Provisional

Probab=97.56  E-value=0.00099  Score=49.30  Aligned_cols=77  Identities=17%  Similarity=0.211  Sum_probs=48.8

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCce--Ee--C---hhHHHh-HHHhhCCCCCeE
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY--VF--T---EEELRN-ISRDASIPKPKL   83 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~--v~--~---~~~~~~-~~~~~~~~~~d~   83 (202)
                      .+++|+|++|++|..+++.+...|++|+.+.++++..++..+.+...+...  ++  |   +.+... +.+..  ..+|+
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~d~   79 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLP--ALPDI   79 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHh--hcCCE
Confidence            579999999999999999998999999998887654222222222222111  11  2   233333 33322  35799


Q ss_pred             EEecCCC
Q psy2961          84 ALNCVGG   90 (202)
Q Consensus        84 vid~~g~   90 (202)
                      ++.++|.
T Consensus        80 vv~~ag~   86 (243)
T PRK07102         80 VLIAVGT   86 (243)
T ss_pred             EEECCcC
Confidence            9987764

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.56  E-value=0.001  Score=49.99  Aligned_cols=79  Identities=16%  Similarity=0.252  Sum_probs=49.6

Q ss_pred             CCCEEEEeCCCc--HHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHh-cCCceEe--C---hhHHHh-HHHhhC-CC
Q psy2961          10 PGDVVIQNGANS--ACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS-LGADYVF--T---EEELRN-ISRDAS-IP   79 (202)
Q Consensus        10 ~g~~VlI~g~~~--~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~-lg~~~v~--~---~~~~~~-~~~~~~-~~   79 (202)
                      .|.+++|+|+++  ++|.++++.+...|++|+.+.+++ ...+..+.+.. .+....+  |   +++... +.+... -+
T Consensus         5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   83 (262)
T PRK07984          5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-KLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGKVWP   83 (262)
T ss_pred             CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecch-hHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHhhcC
Confidence            478999999985  899999999888999988766553 22223333322 2322222  2   344444 433322 14


Q ss_pred             CCeEEEecCC
Q psy2961          80 KPKLALNCVG   89 (202)
Q Consensus        80 ~~d~vid~~g   89 (202)
                      .+|++|+++|
T Consensus        84 ~iD~linnAg   93 (262)
T PRK07984         84 KFDGFVHSIG   93 (262)
T ss_pred             CCCEEEECCc
Confidence            6999999987

>PRK06484 short chain dehydrogenase; Validated

Probab=97.56  E-value=0.0006  Score=56.34  Aligned_cols=78  Identities=22%  Similarity=0.268  Sum_probs=52.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceE---eC---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FT---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v---~~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .|.+++|+|+++++|.++++.+...|++|+.+.++.+..   .+..++++....   .|   +++... +.+... .+++
T Consensus         4 ~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   80 (520)
T PRK06484          4 QSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERA---RERADSLGPDHHALAMDVSDEAQIREGFEQLHREFGRI   80 (520)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH---HHHHHHhCCceeEEEeccCCHHHHHHHHHHHHHHhCCC
Confidence            578999999999999999999999999999888776531   233344554321   23   333333 333221 1469


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.+.|.
T Consensus        81 D~li~nag~   89 (520)
T PRK06484         81 DVLVNNAGV   89 (520)
T ss_pred             CEEEECCCc
Confidence            999998874

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=97.56  E-value=0.00092  Score=51.66  Aligned_cols=77  Identities=18%  Similarity=0.137  Sum_probs=49.1

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCC-CcEEEEecCcccHHHHHHHHHhcC---Cc-eE--eC---hhHHHh-HHHhhC-C
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWG-LKTINIVRNRDDIDKLKSYLKSLG---AD-YV--FT---EEELRN-ISRDAS-I   78 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g-~~vi~~~~~~~~~~~~~~~~~~lg---~~-~v--~~---~~~~~~-~~~~~~-~   78 (202)
                      +.+++|+|+++++|..+++.+...| ++|+.++++.+...   +..+++.   .. .+  .|   .++... +.+... .
T Consensus         3 ~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~---~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   79 (314)
T TIGR01289         3 KPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAE---QAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRESG   79 (314)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHH---HHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHHhC
Confidence            5799999999999999998888889 88888887765322   2223332   11 11  13   233333 333211 2


Q ss_pred             CCCeEEEecCCC
Q psy2961          79 PKPKLALNCVGG   90 (202)
Q Consensus        79 ~~~d~vid~~g~   90 (202)
                      +++|++|.++|.
T Consensus        80 ~~iD~lI~nAG~   91 (314)
T TIGR01289        80 RPLDALVCNAAV   91 (314)
T ss_pred             CCCCEEEECCCc
Confidence            469999998873

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>KOG1207|consensus

Probab=97.55  E-value=0.00021  Score=49.46  Aligned_cols=77  Identities=19%  Similarity=0.242  Sum_probs=50.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCC---ceEeChhHHHhHHH-hhCCCCCeEEE
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA---DYVFTEEELRNISR-DASIPKPKLAL   85 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~---~~v~~~~~~~~~~~-~~~~~~~d~vi   85 (202)
                      .|..|++.|++.++|...++-+...|++||+++++++.   .....++...   ..+.|-.+++.+.+ ...-..+|..+
T Consensus         6 aG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a~---L~sLV~e~p~~I~Pi~~Dls~wea~~~~l~~v~pidgLV   82 (245)
T KOG1207|consen    6 AGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEAN---LLSLVKETPSLIIPIVGDLSAWEALFKLLVPVFPIDGLV   82 (245)
T ss_pred             cceEEEeecccccccHHHHHHHHhcCCEEEEEecCHHH---HHHHHhhCCcceeeeEecccHHHHHHHhhcccCchhhhh
Confidence            68899999999999999999999999999999999874   2233333322   11223344444222 22223456666


Q ss_pred             ecCC
Q psy2961          86 NCVG   89 (202)
Q Consensus        86 d~~g   89 (202)
                      +..|
T Consensus        83 NNAg   86 (245)
T KOG1207|consen   83 NNAG   86 (245)
T ss_pred             ccch
Confidence            6555

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=97.55  E-value=0.00085  Score=50.25  Aligned_cols=80  Identities=10%  Similarity=0.215  Sum_probs=49.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCccc-HHHHHHHHHh-cCCce-Ee--C---hhHHHh-HHHhhC-CC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD-IDKLKSYLKS-LGADY-VF--T---EEELRN-ISRDAS-IP   79 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~-~~~~~~~~~~-lg~~~-v~--~---~~~~~~-~~~~~~-~~   79 (202)
                      .|++++|+|+++++|.++++.+...|++|+.+.++.++ ..+..+.++. .+... .+  |   +++... +.+... -+
T Consensus         7 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   86 (260)
T PRK08416          7 KGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDEDFD   86 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence            57899999999999999999999999998877654432 1111122222 23221 11  2   334433 332211 14


Q ss_pred             CCeEEEecCC
Q psy2961          80 KPKLALNCVG   89 (202)
Q Consensus        80 ~~d~vid~~g   89 (202)
                      .+|++|.++|
T Consensus        87 ~id~lv~nAg   96 (260)
T PRK08416         87 RVDFFISNAI   96 (260)
T ss_pred             CccEEEECcc
Confidence            6899999875

>PRK12367 short chain dehydrogenase; Provisional

Probab=97.55  E-value=0.00053  Score=51.05  Aligned_cols=76  Identities=13%  Similarity=0.181  Sum_probs=48.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceE-eChhHHHhHHHhhCCCCCeEEEecC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRNISRDASIPKPKLALNCV   88 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v-~~~~~~~~~~~~~~~~~~d~vid~~   88 (202)
                      .|.+++|+|++|++|..+++.+...|++|+.+.+++..   ..+.........+ .|-.+..++.+..  +++|++|+++
T Consensus        13 ~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~---~~~~~~~~~~~~~~~D~~~~~~~~~~~--~~iDilVnnA   87 (245)
T PRK12367         13 QGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKIN---NSESNDESPNEWIKWECGKEESLDKQL--ASLDVLILNH   87 (245)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchh---hhhhhccCCCeEEEeeCCCHHHHHHhc--CCCCEEEECC
Confidence            36899999999999999999999999999988876521   1121111111111 1322222233333  4699999998


Q ss_pred             CC
Q psy2961          89 GG   90 (202)
Q Consensus        89 g~   90 (202)
                      |.
T Consensus        88 G~   89 (245)
T PRK12367         88 GI   89 (245)
T ss_pred             cc
Confidence            74

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=97.55  E-value=0.0004  Score=48.62  Aligned_cols=98  Identities=17%  Similarity=0.244  Sum_probs=63.4

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeC-------------------hhHHHh
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT-------------------EEELRN   71 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~-------------------~~~~~~   71 (202)
                      .-+|+|.|+| .+|..|+++++.+|++++......+    +.+..+.++...+..                   +.....
T Consensus        20 p~~vvv~G~G-~vg~gA~~~~~~lGa~v~~~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (168)
T PF01262_consen   20 PAKVVVTGAG-RVGQGAAEIAKGLGAEVVVPDERPE----RLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYES   94 (168)
T ss_dssp             T-EEEEESTS-HHHHHHHHHHHHTT-EEEEEESSHH----HHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHH
T ss_pred             CeEEEEECCC-HHHHHHHHHHhHCCCEEEeccCCHH----HHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHH
Confidence            3788999988 9999999999999999988876654    456666666654332                   122223


Q ss_pred             -HHHhhCCCCCeEEEecC---C--Cch--HHHHHHhcccCcEEEEEeccCCC
Q psy2961          72 -ISRDASIPKPKLALNCV---G--GNS--ATNLLRTLVSKGVMVTYGGMSRE  115 (202)
Q Consensus        72 -~~~~~~~~~~d~vid~~---g--~~~--~~~~~~~l~~~G~~v~~g~~~~~  115 (202)
                       +.+..  ..+|++|-+.   +  .+.  ..+.++.|+++..++.+....+.
T Consensus        95 ~f~~~i--~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis~D~gG  144 (168)
T PF01262_consen   95 NFAEFI--APADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDISCDQGG  144 (168)
T ss_dssp             HHHHHH--HH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETTGGGT-
T ss_pred             HHHHHH--hhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEEecCCC
Confidence             33333  4568888543   1  122  23478899999999998755443

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=97.55  E-value=0.00089  Score=49.32  Aligned_cols=73  Identities=16%  Similarity=0.250  Sum_probs=56.2

Q ss_pred             EEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCCCeEEEecCCC
Q psy2961          14 VIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNCVGG   90 (202)
Q Consensus        14 VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~vid~~g~   90 (202)
                      |+|+|++|.+|..+++.+...+.+|.+.+++.++  ...+.+++.|+..+. |+.+.+.+.+..  .|+|.||.+++.
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~--~~~~~l~~~g~~vv~~d~~~~~~l~~al--~g~d~v~~~~~~   74 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSS--DRAQQLQALGAEVVEADYDDPESLVAAL--KGVDAVFSVTPP   74 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHH--HHHHHHHHTTTEEEES-TT-HHHHHHHH--TTCSEEEEESSC
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccch--hhhhhhhcccceEeecccCCHHHHHHHH--cCCceEEeecCc
Confidence            7899999999999999999999999999988742  346677888987665 344444455555  689999998883

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=97.53  E-value=0.0012  Score=49.00  Aligned_cols=81  Identities=19%  Similarity=0.246  Sum_probs=50.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCc-ccHHHHHHHHHhcCCceE-e--C---hhHHHh-HHHhhC-CCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR-DDIDKLKSYLKSLGADYV-F--T---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~-~~~~~~~~~~~~lg~~~v-~--~---~~~~~~-~~~~~~-~~~   80 (202)
                      .+.+++|+|++|++|..+++.+...|++++.+.++. +...+..+.+++.+.+.. +  |   ++.+.. +.+... -+.
T Consensus         5 ~~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   84 (247)
T PRK12935          5 NGKVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVNHFGK   84 (247)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            368999999999999999998888999988765543 221112233334443321 1  2   233333 333221 146


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|++|.++|.
T Consensus        85 id~vi~~ag~   94 (247)
T PRK12935         85 VDILVNNAGI   94 (247)
T ss_pred             CCEEEECCCC
Confidence            8999999874

>PLN02253 xanthoxin dehydrogenase

Probab=97.53  E-value=0.00078  Score=51.00  Aligned_cols=78  Identities=18%  Similarity=0.322  Sum_probs=49.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCC--c-eEe--C---hhHHHh-HHHhhC-CC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA--D-YVF--T---EEELRN-ISRDAS-IP   79 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~--~-~v~--~---~~~~~~-~~~~~~-~~   79 (202)
                      .+.+++|+|+++++|.++++.+...|++|+.+.++++..   .+...+++.  . ..+  |   .++..+ +..... .+
T Consensus        17 ~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g   93 (280)
T PLN02253         17 LGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLG---QNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVDKFG   93 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHH---HHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHHHhC
Confidence            467999999999999999988888999998887665431   122233321  1 111  2   233333 332211 14


Q ss_pred             CCeEEEecCCC
Q psy2961          80 KPKLALNCVGG   90 (202)
Q Consensus        80 ~~d~vid~~g~   90 (202)
                      ++|++|.++|.
T Consensus        94 ~id~li~~Ag~  104 (280)
T PLN02253         94 TLDIMVNNAGL  104 (280)
T ss_pred             CCCEEEECCCc
Confidence            69999998863

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=97.52  E-value=0.0012  Score=49.34  Aligned_cols=80  Identities=13%  Similarity=0.138  Sum_probs=50.0

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHh-cCCceE--e--C---hhHHHh-HHHhhC-CCC
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS-LGADYV--F--T---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~-lg~~~v--~--~---~~~~~~-~~~~~~-~~~   80 (202)
                      +.+|||+|+++++|..+++.+...|++++.+.++.+...+..+.++. .+...+  +  |   +++... +.+... -.+
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~   81 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGR   81 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            56899999999999999999988999998888776532222222222 221111  1  2   233333 322211 147


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|++|.+.|.
T Consensus        82 id~vv~~ag~   91 (259)
T PRK12384         82 VDLLVYNAGI   91 (259)
T ss_pred             CCEEEECCCc
Confidence            8999999873

>PRK07074 short chain dehydrogenase; Provisional

Probab=97.52  E-value=0.00089  Score=49.96  Aligned_cols=77  Identities=14%  Similarity=0.182  Sum_probs=48.5

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcC---CceE-eC---hhHHHh-HHHhhC-CCCC
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG---ADYV-FT---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg---~~~v-~~---~~~~~~-~~~~~~-~~~~   81 (202)
                      +.+++|+|++|++|..++..+...|++++.+.++.+..   .+..+.+.   ...+ .|   .++... +.+... -+++
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~---~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   78 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAAL---AAFADALGDARFVPVACDLTDAASLAAALANAAAERGPV   78 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHH---HHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            46899999999999999988888999998888776532   12222222   1111 12   233333 322211 1468


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.+.|.
T Consensus        79 d~vi~~ag~   87 (257)
T PRK07074         79 DVLVANAGA   87 (257)
T ss_pred             CEEEECCCC
Confidence            999999874

>TIGR02415 23BDH acetoin reductases

Probab=97.51  E-value=0.0012  Score=49.18  Aligned_cols=79  Identities=14%  Similarity=0.221  Sum_probs=50.3

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceE-e--C---hhHHHh-HHHhhC-CCCCeE
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-F--T---EEELRN-ISRDAS-IPKPKL   83 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v-~--~---~~~~~~-~~~~~~-~~~~d~   83 (202)
                      .+++|.|++|++|..+++.+...|++++.+.++++...+..+.++..+.... +  |   +++... +.+... .+.+|+
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~   80 (254)
T TIGR02415         1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGFDV   80 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCE
Confidence            3789999999999999999889999998888775432222233344443221 1  2   233333 332211 246899


Q ss_pred             EEecCCC
Q psy2961          84 ALNCVGG   90 (202)
Q Consensus        84 vid~~g~   90 (202)
                      +|.+.|.
T Consensus        81 vi~~ag~   87 (254)
T TIGR02415        81 MVNNAGV   87 (254)
T ss_pred             EEECCCc
Confidence            9998874

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK06953 short chain dehydrogenase; Provisional

Probab=97.51  E-value=0.0011  Score=48.30  Aligned_cols=75  Identities=19%  Similarity=0.243  Sum_probs=50.2

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-C---hhHHHhHHHhhCCCCCeEEEec
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-T---EEELRNISRDASIPKPKLALNC   87 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~---~~~~~~~~~~~~~~~~d~vid~   87 (202)
                      .+++|+|++|++|..+++.+...|++++.+.++.+    ..+.++..+...+. |   .+++..+.+...+.++|++|.+
T Consensus         2 ~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~----~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~d~vi~~   77 (222)
T PRK06953          2 KTVLIVGASRGIGREFVRQYRADGWRVIATARDAA----ALAALQALGAEALALDVADPASVAGLAWKLDGEALDAAVYV   77 (222)
T ss_pred             ceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHH----HHHHHHhccceEEEecCCCHHHHHHHHHHhcCCCCCEEEEC
Confidence            47999999999999999888888999988887754    34445445544222 2   2333332222333579999998


Q ss_pred             CCC
Q psy2961          88 VGG   90 (202)
Q Consensus        88 ~g~   90 (202)
                      .|.
T Consensus        78 ag~   80 (222)
T PRK06953         78 AGV   80 (222)
T ss_pred             CCc
Confidence            864

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=97.51  E-value=0.0017  Score=46.55  Aligned_cols=81  Identities=11%  Similarity=0.155  Sum_probs=48.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHH-hcCCceEe-ChhHHHhHHHhhCCCCCeEEEec
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK-SLGADYVF-TEEELRNISRDASIPKPKLALNC   87 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~-~lg~~~v~-~~~~~~~~~~~~~~~~~d~vid~   87 (202)
                      .+.+++|+|++|++|..+++.+...|++++.+.++.++..+-.+.+. ..+..... +..+..++.+..  .+.|+||.+
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~diVi~a  104 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAI--KGADVVFAA  104 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHH--hcCCEEEEC
Confidence            56899999998899999888888889888887766543211111121 12332211 222222222222  467999998


Q ss_pred             CCCch
Q psy2961          88 VGGNS   92 (202)
Q Consensus        88 ~g~~~   92 (202)
                      ++...
T Consensus       105 t~~g~  109 (194)
T cd01078         105 GAAGV  109 (194)
T ss_pred             CCCCc
Confidence            87655

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=97.50  E-value=0.0013  Score=49.16  Aligned_cols=81  Identities=17%  Similarity=0.272  Sum_probs=50.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCccc-HHHHHHHHHhcCCceE-e--C---hhHHHh-HHHhhC-CCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD-IDKLKSYLKSLGADYV-F--T---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~-~~~~~~~~~~lg~~~v-~--~---~~~~~~-~~~~~~-~~~   80 (202)
                      .+.+++|+|+++++|..+++.+...|++++.+.++... ..+..+.++..+.... +  |   ..+... +..... .++
T Consensus         6 ~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~   85 (261)
T PRK08936          6 EGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVKEFGT   85 (261)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            57899999999999999999999999998887765432 1112223333443311 1  2   233333 322211 246


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|++|.+.|.
T Consensus        86 id~lv~~ag~   95 (261)
T PRK08936         86 LDVMINNAGI   95 (261)
T ss_pred             CCEEEECCCC
Confidence            8999998874

>PRK05855 short chain dehydrogenase; Validated

Probab=97.50  E-value=0.00095  Score=55.69  Aligned_cols=81  Identities=15%  Similarity=0.207  Sum_probs=53.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .+.++||+|++|++|..+++.+...|++|+.+.++.+..++..+.+++.|.....   |   ++.... +.+... .+.+
T Consensus       314 ~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i  393 (582)
T PRK05855        314 SGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAEHGVP  393 (582)
T ss_pred             CCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence            4578999999999999999988899999888887765432223334444542211   2   233333 333221 2469


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|+++|.
T Consensus       394 d~lv~~Ag~  402 (582)
T PRK05855        394 DIVVNNAGI  402 (582)
T ss_pred             cEEEECCcc
Confidence            999999874

>PRK07201 short chain dehydrogenase; Provisional

Probab=97.50  E-value=0.00095  Score=56.76  Aligned_cols=81  Identities=19%  Similarity=0.253  Sum_probs=53.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .|.+++|+|++|++|..+++.+...|++|+.+.++++...+..+.++..+....+   |   .++... +.+... -+++
T Consensus       370 ~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i  449 (657)
T PRK07201        370 VGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILAEHGHV  449 (657)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence            3678999999999999999988889999999988776433333333333432211   2   334443 333221 2468


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.++|.
T Consensus       450 d~li~~Ag~  458 (657)
T PRK07201        450 DYLVNNAGR  458 (657)
T ss_pred             CEEEECCCC
Confidence            999999873

>PRK08226 short chain dehydrogenase; Provisional

Probab=97.50  E-value=0.0014  Score=49.12  Aligned_cols=80  Identities=20%  Similarity=0.267  Sum_probs=50.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCce--E-eC---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY--V-FT---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~--v-~~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .+.+++|+|+++++|..+++.+...|++|+.+.++.+ ..+..+.+...+...  + .|   .++... +.+... ...+
T Consensus         5 ~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~i   83 (263)
T PRK08226          5 TGKTALITGALQGIGEGIARVFARHGANLILLDISPE-IEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKEGRI   83 (263)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHH-HHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            4689999999999999999998889999888876653 222222333333321  1 12   233333 332211 2468


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.+.|.
T Consensus        84 d~vi~~ag~   92 (263)
T PRK08226         84 DILVNNAGV   92 (263)
T ss_pred             CEEEECCCc
Confidence            999998883

>PRK08251 short chain dehydrogenase; Provisional

Probab=97.49  E-value=0.0013  Score=48.69  Aligned_cols=79  Identities=16%  Similarity=0.189  Sum_probs=49.5

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhc--CCce-Ee--C---hhHHHh-HHHhhC-CCC
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL--GADY-VF--T---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~l--g~~~-v~--~---~~~~~~-~~~~~~-~~~   80 (202)
                      +.+++|+|+++++|..+++.+...|++|+.+.++++..++..+.+...  +... ++  |   .++... +.+... -++
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   81 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELGG   81 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            468999999999999999888888999988887765422222222222  2211 11  2   233333 333211 246


Q ss_pred             CeEEEecCC
Q psy2961          81 PKLALNCVG   89 (202)
Q Consensus        81 ~d~vid~~g   89 (202)
                      +|++|.++|
T Consensus        82 id~vi~~ag   90 (248)
T PRK08251         82 LDRVIVNAG   90 (248)
T ss_pred             CCEEEECCC
Confidence            899999886

>PLN02730 enoyl-[acyl-carrier-protein] reductase

Probab=97.49  E-value=0.0024  Score=49.12  Aligned_cols=35  Identities=11%  Similarity=0.105  Sum_probs=30.7

Q ss_pred             CCCEEEEeCC--CcHHHHHHHHHHHHCCCcEEEEecCc
Q psy2961          10 PGDVVIQNGA--NSACGQNVIQIARHWGLKTINIVRNR   45 (202)
Q Consensus        10 ~g~~VlI~g~--~~~vG~~~i~la~~~g~~vi~~~~~~   45 (202)
                      .|+++||+|+  ++|+|.++++.+...|++|+. ++..
T Consensus         8 ~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~-~~~~   44 (303)
T PLN02730          8 RGKRAFIAGVADDNGYGWAIAKALAAAGAEILV-GTWV   44 (303)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE-EeCc
Confidence            5889999999  789999999999999999888 4443

>PRK05884 short chain dehydrogenase; Provisional

Probab=97.49  E-value=0.0011  Score=48.59  Aligned_cols=72  Identities=19%  Similarity=0.215  Sum_probs=47.9

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-C---hhHHHh-HHHhhCCCCCeEEEec
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-T---EEELRN-ISRDASIPKPKLALNC   87 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~---~~~~~~-~~~~~~~~~~d~vid~   87 (202)
                      +++|+|+++++|..+++.+...|++|+.+.++.++.   .+..++++...+. |   +++..+ +....  ..+|++|.+
T Consensus         2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~---~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~--~~id~lv~~   76 (223)
T PRK05884          2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDL---EVAAKELDVDAIVCDNTDPASLEEARGLFP--HHLDTIVNV   76 (223)
T ss_pred             eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHH---HHHHHhccCcEEecCCCCHHHHHHHHHHHh--hcCcEEEEC
Confidence            589999999999999999988999998887766431   1222344444332 2   334444 33332  268999987


Q ss_pred             CC
Q psy2961          88 VG   89 (202)
Q Consensus        88 ~g   89 (202)
                      .|
T Consensus        77 ag   78 (223)
T PRK05884         77 PA   78 (223)
T ss_pred             CC
Confidence            65

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.48  E-value=0.0011  Score=49.73  Aligned_cols=80  Identities=13%  Similarity=0.196  Sum_probs=48.7

Q ss_pred             CCCEEEEeCC--CcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHH-HhcCCceEe--C---hhHHHh-HHHhhC-CC
Q psy2961          10 PGDVVIQNGA--NSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGADYVF--T---EEELRN-ISRDAS-IP   79 (202)
Q Consensus        10 ~g~~VlI~g~--~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~v~--~---~~~~~~-~~~~~~-~~   79 (202)
                      .+.+++|+|+  ++++|.++++.+...|++|+.+.+... ..++.+.+ ++++....+  |   +++... +..... .+
T Consensus         5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   83 (260)
T PRK06997          5 AGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDR-FKDRITEFAAEFGSDLVFPCDVASDEQIDALFASLGQHWD   83 (260)
T ss_pred             CCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchH-HHHHHHHHHHhcCCcceeeccCCCHHHHHHHHHHHHHHhC
Confidence            4789999996  569999999988889999887643321 11233333 334432222  2   334443 333221 15


Q ss_pred             CCeEEEecCCC
Q psy2961          80 KPKLALNCVGG   90 (202)
Q Consensus        80 ~~d~vid~~g~   90 (202)
                      .+|++|+++|.
T Consensus        84 ~iD~lvnnAG~   94 (260)
T PRK06997         84 GLDGLVHSIGF   94 (260)
T ss_pred             CCcEEEEcccc
Confidence            79999998863

>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function

Probab=97.47  E-value=0.019  Score=43.98  Aligned_cols=94  Identities=18%  Similarity=0.296  Sum_probs=68.6

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHH--HCCCcEEEEecCcccHHHHHHHHHhcCC-ceEeChhHHHhHHHhhCCCCCeEEEec
Q psy2961          11 GDVVIQNGANSACGQNVIQIAR--HWGLKTINIVRNRDDIDKLKSYLKSLGA-DYVFTEEELRNISRDASIPKPKLALNC   87 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~--~~g~~vi~~~~~~~~~~~~~~~~~~lg~-~~v~~~~~~~~~~~~~~~~~~d~vid~   87 (202)
                      .+.|+|..|+|-+++.++.+++  .-+.++|.+++..+     ....+.+|+ +.|+.|+++..+..    ..--+++|.
T Consensus       136 a~~vvl~SASSKTA~glA~~L~~~~~~~~~vglTS~~N-----~~Fve~lg~Yd~V~~Yd~i~~l~~----~~~~v~VDf  206 (314)
T PF11017_consen  136 AAQVVLSSASSKTAIGLAYCLKKQRGPPKVVGLTSARN-----VAFVESLGCYDEVLTYDDIDSLDA----PQPVVIVDF  206 (314)
T ss_pred             ccEEEEeccchHHHHHHHHHhhccCCCceEEEEecCcc-----hhhhhccCCceEEeehhhhhhccC----CCCEEEEEC
Confidence            4688999999999999998888  44568999998876     578899986 78888887654211    345689999


Q ss_pred             CCCchHHH-HHHhcccCc-EEEEEeccC
Q psy2961          88 VGGNSATN-LLRTLVSKG-VMVTYGGMS  113 (202)
Q Consensus        88 ~g~~~~~~-~~~~l~~~G-~~v~~g~~~  113 (202)
                      .|+..... +-+.++..= ..+.+|..+
T Consensus       207 aG~~~~~~~Lh~~l~d~l~~~~~VG~th  234 (314)
T PF11017_consen  207 AGNGEVLAALHEHLGDNLVYSCLVGATH  234 (314)
T ss_pred             CCCHHHHHHHHHHHhhhhhEEEEEEccC
Confidence            99988765 444554432 456666444

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=97.47  E-value=0.00091  Score=48.78  Aligned_cols=102  Identities=21%  Similarity=0.251  Sum_probs=63.2

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCC--cEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHh-HHHhhCCC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGL--KTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRN-ISRDASIP   79 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~--~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~-~~~~~~~~   79 (202)
                      +...++++++||-.|+|  .|..++.+++..+.  +|+++-.+++-.+...+.++++|.+.+. ...|..+ ..   ...
T Consensus        71 ~~l~~~~~~~VLDiG~G--sG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~---~~~  145 (215)
T TIGR00080        71 ELLELKPGMKVLEIGTG--SGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE---PLA  145 (215)
T ss_pred             HHhCCCCcCEEEEECCC--ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc---ccC
Confidence            34567899999999987  57788888887654  5777776665433333444556653221 1122211 11   124


Q ss_pred             CCeEEEecCCCchHH-HHHHhcccCcEEEEEe
Q psy2961          80 KPKLALNCVGGNSAT-NLLRTLVSKGVMVTYG  110 (202)
Q Consensus        80 ~~d~vid~~g~~~~~-~~~~~l~~~G~~v~~g  110 (202)
                      .||+|+-+...+... .+.+.|++||+++..-
T Consensus       146 ~fD~Ii~~~~~~~~~~~~~~~L~~gG~lv~~~  177 (215)
T TIGR00080       146 PYDRIYVTAAGPKIPEALIDQLKEGGILVMPV  177 (215)
T ss_pred             CCCEEEEcCCcccccHHHHHhcCcCcEEEEEE
Confidence            799887554444433 4778999999988753

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.47  E-value=0.0056  Score=44.30  Aligned_cols=92  Identities=12%  Similarity=0.090  Sum_probs=59.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVG   89 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~g   89 (202)
                      .|.+|||.|+| .+|..-++.+...|++|++++.....   ....+.+.|.-..+. .++..  ...  .++|+||-+++
T Consensus         8 ~gk~vlVvGgG-~va~rk~~~Ll~~ga~VtVvsp~~~~---~l~~l~~~~~i~~~~-~~~~~--~dl--~~~~lVi~at~   78 (205)
T TIGR01470         8 EGRAVLVVGGG-DVALRKARLLLKAGAQLRVIAEELES---ELTLLAEQGGITWLA-RCFDA--DIL--EGAFLVIAATD   78 (205)
T ss_pred             CCCeEEEECcC-HHHHHHHHHHHHCCCEEEEEcCCCCH---HHHHHHHcCCEEEEe-CCCCH--HHh--CCcEEEEECCC
Confidence            46799999999 99999999999999988877654331   233333333222221 11111  001  57899999999


Q ss_pred             CchHHH-HHHhcccCcEEEEEe
Q psy2961          90 GNSATN-LLRTLVSKGVMVTYG  110 (202)
Q Consensus        90 ~~~~~~-~~~~l~~~G~~v~~g  110 (202)
                      .+.... +....+..|..|.+.
T Consensus        79 d~~ln~~i~~~a~~~~ilvn~~  100 (205)
T TIGR01470        79 DEELNRRVAHAARARGVPVNVV  100 (205)
T ss_pred             CHHHHHHHHHHHHHcCCEEEEC
Confidence            886654 566666778777655

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=97.46  E-value=0.00069  Score=54.07  Aligned_cols=76  Identities=17%  Similarity=0.226  Sum_probs=49.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcC--CceE-eChhHHHhHHHhhCCCCCeEEEe
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG--ADYV-FTEEELRNISRDASIPKPKLALN   86 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg--~~~v-~~~~~~~~~~~~~~~~~~d~vid   86 (202)
                      .|++|+|+|++|++|.++++.+...|++|+.+.++++..   .+.....+  ...+ .|-.+...+.+..  +++|++|.
T Consensus       177 ~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l---~~~~~~~~~~v~~v~~Dvsd~~~v~~~l--~~IDiLIn  251 (406)
T PRK07424        177 KGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKI---TLEINGEDLPVKTLHWQVGQEAALAELL--EKVDILII  251 (406)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH---HHHHhhcCCCeEEEEeeCCCHHHHHHHh--CCCCEEEE
Confidence            478999999999999999998888999999888766431   11122111  1111 1322322233333  46999998


Q ss_pred             cCCC
Q psy2961          87 CVGG   90 (202)
Q Consensus        87 ~~g~   90 (202)
                      +.|.
T Consensus       252 nAGi  255 (406)
T PRK07424        252 NHGI  255 (406)
T ss_pred             CCCc
Confidence            8763

>KOG1610|consensus

Probab=97.46  E-value=0.0044  Score=47.04  Aligned_cols=107  Identities=14%  Similarity=0.141  Sum_probs=69.6

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCce-EeC---hhH---HHh-HHHhhCCCC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-VFT---EEE---LRN-ISRDASIPK   80 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-v~~---~~~---~~~-~~~~~~~~~   80 (202)
                      .++..|+|+|+-+|.|..++.-+...|..|++.|-.++..+......++-.... .+|   +++   ... +++.....+
T Consensus        27 ~~~k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agcl~~~gae~L~~~~~s~rl~t~~LDVT~~esi~~a~~~V~~~l~~~g  106 (322)
T KOG1610|consen   27 LSDKAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTEEGAESLRGETKSPRLRTLQLDVTKPESVKEAAQWVKKHLGEDG  106 (322)
T ss_pred             cCCcEEEEecCCcHHHHHHHHHHHhcCCEEEEEeecCchHHHHhhhhcCCcceeEeeccCCHHHHHHHHHHHHHhccccc
Confidence            456779999999999999999999999999999977664222122221101111 122   333   333 666777778


Q ss_pred             CeEEEecCCCc---------------------------hHHHHHHhccc-CcEEEEEeccCCC
Q psy2961          81 PKLALNCVGGN---------------------------SATNLLRTLVS-KGVMVTYGGMSRE  115 (202)
Q Consensus        81 ~d~vid~~g~~---------------------------~~~~~~~~l~~-~G~~v~~g~~~~~  115 (202)
                      ...+|+++|-.                           .+..++.++++ .||+|.+++..+.
T Consensus       107 LwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~arGRvVnvsS~~GR  169 (322)
T KOG1610|consen  107 LWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRARGRVVNVSSVLGR  169 (322)
T ss_pred             ceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhccCeEEEecccccC
Confidence            99999999821                           11223445544 5999999877664

>PRK12746 short chain dehydrogenase; Provisional

Probab=97.45  E-value=0.0014  Score=48.77  Aligned_cols=36  Identities=22%  Similarity=0.273  Sum_probs=29.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEe-cCc
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIV-RNR   45 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~-~~~   45 (202)
                      .+.+++|+|++|++|..+++.+...|++++... ++.
T Consensus         5 ~~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~   41 (254)
T PRK12746          5 DGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNK   41 (254)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCH
Confidence            357999999999999999998888999887654 443

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=97.44  E-value=0.0021  Score=47.41  Aligned_cols=81  Identities=15%  Similarity=0.231  Sum_probs=50.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccH-HHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDI-DKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~-~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~   80 (202)
                      .+.+++|+|++|++|..+++.+...|++|+++.++.+.. ....+.++..+.....   |   ..++.. +.+... -.+
T Consensus         4 ~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   83 (248)
T PRK05557          4 EGKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKAEFGG   83 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            357899999999999999999999999987877765421 1112223333333221   2   222333 222211 146


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|.+|.++|.
T Consensus        84 id~vi~~ag~   93 (248)
T PRK05557         84 VDILVNNAGI   93 (248)
T ss_pred             CCEEEECCCc
Confidence            8999998874

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=97.44  E-value=0.0023  Score=48.39  Aligned_cols=95  Identities=17%  Similarity=0.159  Sum_probs=56.6

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCV   88 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~   88 (202)
                      ..+.+++|.|+| ++|.+++..+...|++++++.++.++.++..+.+...+........+.       ....+|+||+|+
T Consensus       115 ~~~k~vliiGaG-g~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~-------~~~~~DivInat  186 (270)
T TIGR00507       115 RPNQRVLIIGAG-GAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDEL-------PLHRVDLIINAT  186 (270)
T ss_pred             ccCCEEEEEcCc-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhh-------cccCccEEEECC
Confidence            457899999997 899998888888898777766665432111222222232222221110       113689999999


Q ss_pred             CCchHH-----H-HHHhcccCcEEEEEec
Q psy2961          89 GGNSAT-----N-LLRTLVSKGVMVTYGG  111 (202)
Q Consensus        89 g~~~~~-----~-~~~~l~~~G~~v~~g~  111 (202)
                      +.....     . ....++++..++.+..
T Consensus       187 p~gm~~~~~~~~~~~~~l~~~~~v~D~~y  215 (270)
T TIGR00507       187 SAGMSGNIDEPPVPAEKLKEGMVVYDMVY  215 (270)
T ss_pred             CCCCCCCCCCCCCCHHHcCCCCEEEEecc
Confidence            753211     1 2456777777777753

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B

Probab=97.43  E-value=0.0033  Score=46.53  Aligned_cols=162  Identities=17%  Similarity=0.190  Sum_probs=91.7

Q ss_pred             CCC--cHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHH-HhcCCceEe--C---hhHHHh-HHHhhCC--CCCeEEEe
Q psy2961          18 GAN--SACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGADYVF--T---EEELRN-ISRDASI--PKPKLALN   86 (202)
Q Consensus        18 g~~--~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~v~--~---~~~~~~-~~~~~~~--~~~d~vid   86 (202)
                      |++  +++|.++++.+...|++|+.+.++.++.....+.+ ++.+.+ ++  |   +++... +.+....  +.+|++|.
T Consensus         1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~-~~~~D~~~~~~v~~~~~~~~~~~~g~iD~lV~   79 (241)
T PF13561_consen    1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAE-VIQCDLSDEESVEALFDEAVERFGGRIDILVN   79 (241)
T ss_dssp             STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSE-EEESCTTSHHHHHHHHHHHHHHHCSSESEEEE
T ss_pred             CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCc-eEeecCcchHHHHHHHHHHHhhcCCCeEEEEe
Confidence            555  89999999999999999999998887533333344 445654 34  2   334333 3332221  57999998


Q ss_pred             cCCCch------------------------------HHHHHHhcccCcEEEEEeccCCCCcCCC----------------
Q psy2961          87 CVGGNS------------------------------ATNLLRTLVSKGVMVTYGGMSREPVQIP----------------  120 (202)
Q Consensus        87 ~~g~~~------------------------------~~~~~~~l~~~G~~v~~g~~~~~~~~~~----------------  120 (202)
                      +.+...                              ...+.+.|+++|+++.++..........                
T Consensus        80 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss~~~~~~~~~~~~y~~sKaal~~l~r  159 (241)
T PF13561_consen   80 NAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISSIAAQRPMPGYSAYSASKAALEGLTR  159 (241)
T ss_dssp             EEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEEGGGTSBSTTTHHHHHHHHHHHHHHH
T ss_pred             cccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccchhhcccCccchhhHHHHHHHHHHHH
Confidence            764211                              1113456788899999876544322111                


Q ss_pred             --cccccc-cCeeEEEEechhHhhhcccHHHHHHHHHHHHHHHHcCCCCCCcceeechhhHHHHHHHHh
Q psy2961         121 --TSAFIF-KDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTM  186 (202)
Q Consensus       121 --~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~  186 (202)
                        ..++-. +++++-............  .. ....++..+.+.+.   .+..+....+++.++...+.
T Consensus       160 ~lA~el~~~~gIrVN~V~pG~i~t~~~--~~-~~~~~~~~~~~~~~---~pl~r~~~~~evA~~v~fL~  222 (241)
T PF13561_consen  160 SLAKELAPKKGIRVNAVSPGPIETPMT--ER-IPGNEEFLEELKKR---IPLGRLGTPEEVANAVLFLA  222 (241)
T ss_dssp             HHHHHHGGHGTEEEEEEEESSBSSHHH--HH-HHTHHHHHHHHHHH---STTSSHBEHHHHHHHHHHHH
T ss_pred             HHHHHhccccCeeeeeecccceeccch--hc-cccccchhhhhhhh---hccCCCcCHHHHHHHHHHHh
Confidence              122334 577777666443222110  00 11123333333321   23334467889999998887

...

>PRK12744 short chain dehydrogenase; Provisional

Probab=97.43  E-value=0.0021  Score=47.98  Aligned_cols=81  Identities=23%  Similarity=0.364  Sum_probs=49.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCccc----HHHHHHHHHhcCCceE-e--C---hhHHHh-HHHhhC-
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD----IDKLKSYLKSLGADYV-F--T---EEELRN-ISRDAS-   77 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~----~~~~~~~~~~lg~~~v-~--~---~~~~~~-~~~~~~-   77 (202)
                      .+.+++|+|+++++|..+++.+...|++++.++++.+.    .++..+.++..+.... +  |   +++... +.+... 
T Consensus         7 ~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   86 (257)
T PRK12744          7 KGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKAA   86 (257)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHHh
Confidence            46799999999999999999998899997777654321    1111222333343311 1  2   333333 332211 


Q ss_pred             CCCCeEEEecCCC
Q psy2961          78 IPKPKLALNCVGG   90 (202)
Q Consensus        78 ~~~~d~vid~~g~   90 (202)
                      .+++|++|.++|.
T Consensus        87 ~~~id~li~~ag~   99 (257)
T PRK12744         87 FGRPDIAINTVGK   99 (257)
T ss_pred             hCCCCEEEECCcc
Confidence            2468999999874

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=97.43  E-value=0.0014  Score=48.88  Aligned_cols=78  Identities=13%  Similarity=0.166  Sum_probs=49.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceE-e--C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-F--T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v-~--~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .+.++||+|+++++|..+++.+...|++|+.+.++.+..   .+...+++.... +  |   .++... +.+... .+++
T Consensus         5 ~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~---~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   81 (257)
T PRK07067          5 QGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARA---RLAALEIGPAAIAVSLDVTRQDSIDRIVAAAVERFGGI   81 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHH---HHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            367899999999999999999999999999888776531   122223332211 1  2   233333 332211 1468


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.+.|.
T Consensus        82 d~li~~ag~   90 (257)
T PRK07067         82 DILFNNAAL   90 (257)
T ss_pred             CEEEECCCc
Confidence            999998863

>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase

Probab=97.42  E-value=0.0018  Score=47.75  Aligned_cols=79  Identities=14%  Similarity=0.204  Sum_probs=47.3

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCccc-HHHHHHHHHhcCCce-Ee--C---hhHHHh-HHHhhC-CCCCe
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD-IDKLKSYLKSLGADY-VF--T---EEELRN-ISRDAS-IPKPK   82 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~-~~~~~~~~~~lg~~~-v~--~---~~~~~~-~~~~~~-~~~~d   82 (202)
                      +++||+|++|++|..+++.+...|++++.+.++... ..+..+.....+... ++  |   +.++.. +.+... ...+|
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   80 (242)
T TIGR01829         1 RIALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVAKVEAELGPID   80 (242)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHcCCCc
Confidence            478999999999999999999999999888873321 111111122222221 11  2   233333 332211 24689


Q ss_pred             EEEecCCC
Q psy2961          83 LALNCVGG   90 (202)
Q Consensus        83 ~vid~~g~   90 (202)
                      ++|.+.|.
T Consensus        81 ~vi~~ag~   88 (242)
T TIGR01829        81 VLVNNAGI   88 (242)
T ss_pred             EEEECCCC
Confidence            99999874

(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.

>PRK06179 short chain dehydrogenase; Provisional

Probab=97.42  E-value=0.001  Score=50.05  Aligned_cols=74  Identities=15%  Similarity=0.246  Sum_probs=49.3

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe----ChhHHHh-HHHhhC-CCCCeEE
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF----TEEELRN-ISRDAS-IPKPKLA   84 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~----~~~~~~~-~~~~~~-~~~~d~v   84 (202)
                      +.+++|+|++|++|..+++.+...|++|+.++++.+.    .+..  .+...+.    +++++.. +..... .+.+|++
T Consensus         4 ~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~----~~~~--~~~~~~~~D~~d~~~~~~~~~~~~~~~g~~d~l   77 (270)
T PRK06179          4 SKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPAR----AAPI--PGVELLELDVTDDASVQAAVDEVIARAGRIDVL   77 (270)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhh----cccc--CCCeeEEeecCCHHHHHHHHHHHHHhCCCCCEE
Confidence            5689999999999999999888899999988876542    2111  1222222    2334444 333211 2468999


Q ss_pred             EecCCC
Q psy2961          85 LNCVGG   90 (202)
Q Consensus        85 id~~g~   90 (202)
                      |.+.|.
T Consensus        78 i~~ag~   83 (270)
T PRK06179         78 VNNAGV   83 (270)
T ss_pred             EECCCC
Confidence            999984

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.42  E-value=0.00023  Score=57.75  Aligned_cols=43  Identities=9%  Similarity=0.157  Sum_probs=37.2

Q ss_pred             cccCCCCCCEEE----EeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961           4 DYNSLSPGDVVI----QNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus         4 ~~~~~~~g~~Vl----I~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      ...++++|+++|    |+|+.|++|.+++|+++..|++|+.+.+...
T Consensus        27 ~l~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~~v~~~~~~~~   73 (450)
T PRK08261         27 PLRRYRPGQPLLDGPVLVGGAGRLAEALAALLAGLGYDVVANNDGGL   73 (450)
T ss_pred             cccCCCCCCCCCCCceEEccCchhHHHHHHHHhhCCCeeeecCcccc
Confidence            456788999998    8998899999999999999999998776553

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=97.42  E-value=0.0011  Score=52.58  Aligned_cols=96  Identities=17%  Similarity=0.204  Sum_probs=62.3

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCce-E-eChhHHHhHHHhhCCCCC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-V-FTEEELRNISRDASIPKP   81 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-v-~~~~~~~~~~~~~~~~~~   81 (202)
                      +..++++|++||-.|+|  .|..+..+++..|++|+++..+++.    .+.+++..... + +...+.   ...  ...+
T Consensus       161 ~~l~l~~g~rVLDIGcG--~G~~a~~la~~~g~~V~giDlS~~~----l~~A~~~~~~l~v~~~~~D~---~~l--~~~f  229 (383)
T PRK11705        161 RKLQLKPGMRVLDIGCG--WGGLARYAAEHYGVSVVGVTISAEQ----QKLAQERCAGLPVEIRLQDY---RDL--NGQF  229 (383)
T ss_pred             HHhCCCCCCEEEEeCCC--ccHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHhccCeEEEEECch---hhc--CCCC
Confidence            45567899999999986  6888899999889999998877763    55554432111 1 111121   111  2468


Q ss_pred             eEEEec-----CCCc----hHHHHHHhcccCcEEEEEe
Q psy2961          82 KLALNC-----VGGN----SATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        82 d~vid~-----~g~~----~~~~~~~~l~~~G~~v~~g  110 (202)
                      |.|+..     +|..    .+..+.+.|+|+|.++...
T Consensus       230 D~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~  267 (383)
T PRK11705        230 DRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT  267 (383)
T ss_pred             CEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            988643     3332    2234678999999998754

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=97.41  E-value=0.0016  Score=51.06  Aligned_cols=80  Identities=14%  Similarity=0.161  Sum_probs=49.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcC--CceEe-ChhHHHhHHHhhCCCCCeEEEe
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG--ADYVF-TEEELRNISRDASIPKPKLALN   86 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg--~~~v~-~~~~~~~~~~~~~~~~~d~vid   86 (202)
                      .|.+|||+|++|.+|..+++.+...|.+|+++.+++.........+. .+  ...+. |-.+...+.+.....++|+||.
T Consensus         3 ~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vih   81 (349)
T TIGR02622         3 QGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLN-LAKKIEDHFGDIRDAAKLRKAIAEFKPEIVFH   81 (349)
T ss_pred             CCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHh-hcCCceEEEccCCCHHHHHHHHhhcCCCEEEE
Confidence            36899999999999999999999999999988766553111111111 11  11121 2122222333333346899999


Q ss_pred             cCCC
Q psy2961          87 CVGG   90 (202)
Q Consensus        87 ~~g~   90 (202)
                      +++.
T Consensus        82 ~A~~   85 (349)
T TIGR02622        82 LAAQ   85 (349)
T ss_pred             CCcc
Confidence            9873

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PRK06398 aldose dehydrogenase; Validated

Probab=97.41  E-value=0.00038  Score=52.13  Aligned_cols=76  Identities=20%  Similarity=0.226  Sum_probs=48.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhC-CCCCeEEEec
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDAS-IPKPKLALNC   87 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~-~~~~d~vid~   87 (202)
                      .|.++||+|+++++|.++++.+...|++|+.+.++.+.    ...+..+.++ +-++.+... +.+... -+++|++|.+
T Consensus         5 ~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~----~~~~~~~~~D-~~~~~~i~~~~~~~~~~~~~id~li~~   79 (258)
T PRK06398          5 KDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPS----YNDVDYFKVD-VSNKEQVIKGIDYVISKYGRIDILVNN   79 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCccc----cCceEEEEcc-CCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            46899999999999999999999999999988766542    1111000001 112334433 333221 1469999998


Q ss_pred             CCC
Q psy2961          88 VGG   90 (202)
Q Consensus        88 ~g~   90 (202)
                      .|.
T Consensus        80 Ag~   82 (258)
T PRK06398         80 AGI   82 (258)
T ss_pred             CCC
Confidence            873

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.40  E-value=0.0011  Score=54.36  Aligned_cols=74  Identities=22%  Similarity=0.254  Sum_probs=52.2

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhCCCCCeEEE
Q psy2961           7 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLAL   85 (202)
Q Consensus         7 ~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~~~~~d~vi   85 (202)
                      ++.+|++|+|+|.| ..|++++++++..|++|++....++    +.+.++++|...+.... ..+ +      ..+|+||
T Consensus         8 ~~~~~~~v~V~G~G-~sG~aa~~~L~~~G~~v~~~D~~~~----~~~~l~~~g~~~~~~~~-~~~~l------~~~D~VV   75 (488)
T PRK03369          8 PLLPGAPVLVAGAG-VTGRAVLAALTRFGARPTVCDDDPD----ALRPHAERGVATVSTSD-AVQQI------ADYALVV   75 (488)
T ss_pred             cccCCCeEEEEcCC-HHHHHHHHHHHHCCCEEEEEcCCHH----HHHHHHhCCCEEEcCcc-hHhHh------hcCCEEE
Confidence            35688999999999 8999999999999999888553332    34456777775433211 112 2      3569999


Q ss_pred             ecCCCch
Q psy2961          86 NCVGGNS   92 (202)
Q Consensus        86 d~~g~~~   92 (202)
                      .+.|-+.
T Consensus        76 ~SpGi~~   82 (488)
T PRK03369         76 TSPGFRP   82 (488)
T ss_pred             ECCCCCC
Confidence            9888653

>PRK06123 short chain dehydrogenase; Provisional

Probab=97.39  E-value=0.002  Score=47.71  Aligned_cols=80  Identities=15%  Similarity=0.184  Sum_probs=48.4

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCc-ccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCCC
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR-DDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~-~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~~   81 (202)
                      +.++||+|+++++|..+++.+...|++++.+.+++ +...+..+.++..+.....   |   ...+.. +.+... .+.+
T Consensus         2 ~~~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   81 (248)
T PRK06123          2 RKVMIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDRELGRL   81 (248)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHHHHHHhCCC
Confidence            46899999999999999988888999877665433 2211122333444433222   2   223333 332211 1468


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.++|.
T Consensus        82 d~li~~ag~   90 (248)
T PRK06123         82 DALVNNAGI   90 (248)
T ss_pred             CEEEECCCC
Confidence            999998874

>PRK07577 short chain dehydrogenase; Provisional

Probab=97.39  E-value=0.00053  Score=50.37  Aligned_cols=72  Identities=19%  Similarity=0.225  Sum_probs=49.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceE-eC---hhHHHh-HHHhhCCCCCeEE
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FT---EEELRN-ISRDASIPKPKLA   84 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v-~~---~~~~~~-~~~~~~~~~~d~v   84 (202)
                      .+.+++|.|++|++|..+++.+...|++|+.+.++.+.     .    .....+ .|   ..+... +.+.....++|++
T Consensus         2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~-----~----~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~v   72 (234)
T PRK07577          2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAID-----D----FPGELFACDLADIEQTAATLAQINEIHPVDAI   72 (234)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCccc-----c----cCceEEEeeCCCHHHHHHHHHHHHHhCCCcEE
Confidence            35789999999999999999999999999988877642     1    111111 12   333444 4444333468999


Q ss_pred             EecCCC
Q psy2961          85 LNCVGG   90 (202)
Q Consensus        85 id~~g~   90 (202)
                      |.+.|.
T Consensus        73 i~~ag~   78 (234)
T PRK07577         73 VNNVGI   78 (234)
T ss_pred             EECCCC
Confidence            998874

>PRK08264 short chain dehydrogenase; Validated

Probab=97.39  E-value=0.0016  Score=48.02  Aligned_cols=72  Identities=21%  Similarity=0.277  Sum_probs=47.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcccHHHHHHHHHhcCC--ceEe-C---hhHHHhHHHhhCCCCCe
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGA--DYVF-T---EEELRNISRDASIPKPK   82 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~--~~v~-~---~~~~~~~~~~~~~~~~d   82 (202)
                      .+.+++|+|++|++|..+++.+...|+ +|+.+.++.+.    .+.   .+.  ..+. |   .+++..+.+..  ..+|
T Consensus         5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~----~~~---~~~~~~~~~~D~~~~~~~~~~~~~~--~~id   75 (238)
T PRK08264          5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPES----VTD---LGPRVVPLQLDVTDPASVAAAAEAA--SDVT   75 (238)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhh----hhh---cCCceEEEEecCCCHHHHHHHHHhc--CCCC
Confidence            467899999999999999999999999 88887776542    221   222  2111 2   23333322221  4689


Q ss_pred             EEEecCCC
Q psy2961          83 LALNCVGG   90 (202)
Q Consensus        83 ~vid~~g~   90 (202)
                      ++|.+.|.
T Consensus        76 ~vi~~ag~   83 (238)
T PRK08264         76 ILVNNAGI   83 (238)
T ss_pred             EEEECCCc
Confidence            99999876

>PRK09134 short chain dehydrogenase; Provisional

Probab=97.38  E-value=0.0025  Score=47.59  Aligned_cols=81  Identities=17%  Similarity=0.252  Sum_probs=49.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCccc-HHHHHHHHHhcCCce-Ee--C---hhHHHh-HHHhhC-CCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD-IDKLKSYLKSLGADY-VF--T---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~-~~~~~~~~~~lg~~~-v~--~---~~~~~~-~~~~~~-~~~   80 (202)
                      .+.++||+|+++++|..+++.+...|++++.+.+++.. .....+.++..+... .+  |   ..+... +.+... .++
T Consensus         8 ~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~   87 (258)
T PRK09134          8 APRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAEVRALVARASAALGP   87 (258)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            56799999999999999999888999998887765432 111112222334321 11  3   233333 332211 247


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|++|.+.|.
T Consensus        88 iD~vi~~ag~   97 (258)
T PRK09134         88 ITLLVNNASL   97 (258)
T ss_pred             CCEEEECCcC
Confidence            9999999873

>KOG1208|consensus

Probab=97.37  E-value=0.0015  Score=50.30  Aligned_cols=81  Identities=16%  Similarity=0.181  Sum_probs=54.3

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHh-cCCceEe----C---hhHHHh-HHHh-hCC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS-LGADYVF----T---EEELRN-ISRD-ASI   78 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~-lg~~~v~----~---~~~~~~-~~~~-~~~   78 (202)
                      -.|.+++|+|+++|+|..+++-+...|++|+..+++.+...+..+.+++ .....+.    |   .+.... ..+. ...
T Consensus        33 ~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~~~~  112 (314)
T KOG1208|consen   33 LSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFKKKE  112 (314)
T ss_pred             CCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHHhcC
Confidence            3567999999999999999999999999999999998654444444443 2233322    2   122222 1111 123


Q ss_pred             CCCeEEEecCC
Q psy2961          79 PKPKLALNCVG   89 (202)
Q Consensus        79 ~~~d~vid~~g   89 (202)
                      .+.|+.|+.+|
T Consensus       113 ~~ldvLInNAG  123 (314)
T KOG1208|consen  113 GPLDVLINNAG  123 (314)
T ss_pred             CCccEEEeCcc
Confidence            67899999887

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.37  E-value=0.0062  Score=43.97  Aligned_cols=93  Identities=11%  Similarity=0.140  Sum_probs=55.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVG   89 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~g   89 (202)
                      .|.+|+|.|+| .+|...++.+...|++++++.....  ++..+.+.. +.-.. ....+..  ..  -.++|+||-+++
T Consensus         9 ~~k~vLVIGgG-~va~~ka~~Ll~~ga~V~VIs~~~~--~~l~~l~~~-~~i~~-~~~~~~~--~~--l~~adlViaaT~   79 (202)
T PRK06718          9 SNKRVVIVGGG-KVAGRRAITLLKYGAHIVVISPELT--ENLVKLVEE-GKIRW-KQKEFEP--SD--IVDAFLVIAATN   79 (202)
T ss_pred             CCCEEEEECCC-HHHHHHHHHHHHCCCeEEEEcCCCC--HHHHHHHhC-CCEEE-EecCCCh--hh--cCCceEEEEcCC
Confidence            56899999998 8999999888889998877754322  111222222 21111 1111111  00  157899999999


Q ss_pred             CchHHHHHHhcccCcEEEEEec
Q psy2961          90 GNSATNLLRTLVSKGVMVTYGG  111 (202)
Q Consensus        90 ~~~~~~~~~~l~~~G~~v~~g~  111 (202)
                      .+.....+...+..+.++.+..
T Consensus        80 d~elN~~i~~~a~~~~lvn~~d  101 (202)
T PRK06718         80 DPRVNEQVKEDLPENALFNVIT  101 (202)
T ss_pred             CHHHHHHHHHHHHhCCcEEECC
Confidence            9988764433334456666653

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=97.36  E-value=0.0022  Score=47.53  Aligned_cols=78  Identities=15%  Similarity=0.180  Sum_probs=47.9

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc-cHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCCCe
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD-DIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPKPK   82 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~-~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~~d   82 (202)
                      .+|||.|+++++|..+++.+...|++++.+.+++. ...+..+.++..+.....   |   ..+... +.+... .+++|
T Consensus         3 k~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id   82 (248)
T PRK06947          3 KVVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQSAFGRLD   82 (248)
T ss_pred             cEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHHHHhcCCCC
Confidence            58999999999999999999999999877654432 211122333334432211   2   233333 333211 24689


Q ss_pred             EEEecCC
Q psy2961          83 LALNCVG   89 (202)
Q Consensus        83 ~vid~~g   89 (202)
                      ++|.++|
T Consensus        83 ~li~~ag   89 (248)
T PRK06947         83 ALVNNAG   89 (248)
T ss_pred             EEEECCc
Confidence            9999887

>PRK09135 pteridine reductase; Provisional

Probab=97.35  E-value=0.0016  Score=48.15  Aligned_cols=37  Identities=11%  Similarity=0.167  Sum_probs=32.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      .+.+|||+|++|++|..+++.+...|++|+.+.++.+
T Consensus         5 ~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~   41 (249)
T PRK09135          5 SAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSA   41 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCH
Confidence            4578999999999999999888889999999887643

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.35  E-value=0.0027  Score=47.24  Aligned_cols=79  Identities=15%  Similarity=0.215  Sum_probs=49.1

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCccc-HHHHHHHHHhcCCce-Ee--C---hhHHHh-HHHhhC-CCCCe
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD-IDKLKSYLKSLGADY-VF--T---EEELRN-ISRDAS-IPKPK   82 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~-~~~~~~~~~~lg~~~-v~--~---~~~~~~-~~~~~~-~~~~d   82 (202)
                      .+++|.|++|++|..+++.+...|++++.+.++... ..+..+.++..+... ++  |   +.+... +.+... .+.+|
T Consensus         3 k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   82 (256)
T PRK12745          3 PVALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAAWGRID   82 (256)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHhcCCCC
Confidence            579999999999999999999999999888866432 111122333333321 11  2   333333 332211 14689


Q ss_pred             EEEecCCC
Q psy2961          83 LALNCVGG   90 (202)
Q Consensus        83 ~vid~~g~   90 (202)
                      ++|.+.|.
T Consensus        83 ~vi~~ag~   90 (256)
T PRK12745         83 CLVNNAGV   90 (256)
T ss_pred             EEEECCcc
Confidence            99999874

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.35  E-value=0.00068  Score=50.11  Aligned_cols=80  Identities=24%  Similarity=0.339  Sum_probs=48.8

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEE-ecCcccHHHHHHHHHhcCCce-Ee--C---hhHHHh-HHHhhC-CCCC
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINI-VRNRDDIDKLKSYLKSLGADY-VF--T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~-~~~~~~~~~~~~~~~~lg~~~-v~--~---~~~~~~-~~~~~~-~~~~   81 (202)
                      +.++||.|++|++|..++..+...|++++.+ .++.+...+..+.+...+... ++  |   .+++.. +.+... .+++
T Consensus         5 ~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   84 (247)
T PRK05565          5 GKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVEKFGKI   84 (247)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            5689999999999999998888889998888 655443222223333323221 11  2   233333 222211 1469


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.+.|.
T Consensus        85 d~vi~~ag~   93 (247)
T PRK05565         85 DILVNNAGI   93 (247)
T ss_pred             CEEEECCCc
Confidence            999998874

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.35  E-value=0.0024  Score=51.14  Aligned_cols=78  Identities=14%  Similarity=0.094  Sum_probs=51.6

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCV   88 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~   88 (202)
                      -.+.+|+|.|+| ++|.+++.-+...|+..+.++++...  ...+.+.+++...++..+++.+   ..  ..+|+||.|+
T Consensus       179 l~~kkvlviGaG-~~a~~va~~L~~~g~~~I~V~nRt~~--ra~~La~~~~~~~~~~~~~l~~---~l--~~aDiVI~aT  250 (414)
T PRK13940        179 ISSKNVLIIGAG-QTGELLFRHVTALAPKQIMLANRTIE--KAQKITSAFRNASAHYLSELPQ---LI--KKADIIIAAV  250 (414)
T ss_pred             ccCCEEEEEcCc-HHHHHHHHHHHHcCCCEEEEECCCHH--HHHHHHHHhcCCeEecHHHHHH---Hh--ccCCEEEECc
Confidence            357899999998 89999998888899866666655432  1234445565223344444333   11  4689999999


Q ss_pred             CCchHH
Q psy2961          89 GGNSAT   94 (202)
Q Consensus        89 g~~~~~   94 (202)
                      +.+...
T Consensus       251 ~a~~~v  256 (414)
T PRK13940        251 NVLEYI  256 (414)
T ss_pred             CCCCee
Confidence            988753

>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional

Probab=97.33  E-value=0.003  Score=46.71  Aligned_cols=79  Identities=11%  Similarity=0.139  Sum_probs=48.9

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEe-cCcccHHHHHHHHHhcCCce-Ee--C---hhHHHh-HHHhh-CCCCCe
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIV-RNRDDIDKLKSYLKSLGADY-VF--T---EEELRN-ISRDA-SIPKPK   82 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~-~~~~~~~~~~~~~~~lg~~~-v~--~---~~~~~~-~~~~~-~~~~~d   82 (202)
                      .+++|+|++|++|..+++.+...|++|+.+. ++.+...+....++..+... ++  |   .++... +.+.. ...++|
T Consensus         2 ~~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~id   81 (247)
T PRK09730          2 AIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAIDQHDEPLA   81 (247)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHHHHHhCCCCC
Confidence            4799999999999999998888999987754 33332222223334444321 11  2   233333 33322 235789


Q ss_pred             EEEecCCC
Q psy2961          83 LALNCVGG   90 (202)
Q Consensus        83 ~vid~~g~   90 (202)
                      ++|.++|.
T Consensus        82 ~vi~~ag~   89 (247)
T PRK09730         82 ALVNNAGI   89 (247)
T ss_pred             EEEECCCC
Confidence            99999884

>KOG1014|consensus

Probab=97.33  E-value=0.0023  Score=48.45  Aligned_cols=82  Identities=13%  Similarity=0.197  Sum_probs=56.3

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHH-HHHHhcCCc---eEeCh----hHHHhHHHhhCCCC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLK-SYLKSLGAD---YVFTE----EELRNISRDASIPK   80 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~-~~~~~lg~~---~v~~~----~~~~~~~~~~~~~~   80 (202)
                      +.|++.+|.|++.++|.+.+.-+...|.+|+.+.|+.++++.-. +..+..++.   .++|.    .+++.+++.+.+-.
T Consensus        47 ~~g~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~~~~  126 (312)
T KOG1014|consen   47 KLGSWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLAGLD  126 (312)
T ss_pred             hcCCEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhcCCc
Confidence            45789999999999999866555559999999999988544322 233344532   12231    12333777777778


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +-+.++++|-
T Consensus       127 VgILVNNvG~  136 (312)
T KOG1014|consen  127 VGILVNNVGM  136 (312)
T ss_pred             eEEEEecccc
Confidence            8899999984

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.32  E-value=0.0022  Score=47.95  Aligned_cols=79  Identities=19%  Similarity=0.255  Sum_probs=49.2

Q ss_pred             CCCEEEEeCC--CcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHH-HhcCCc--eE-eC---hhHHHh-HHHhhC-C
Q psy2961          10 PGDVVIQNGA--NSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGAD--YV-FT---EEELRN-ISRDAS-I   78 (202)
Q Consensus        10 ~g~~VlI~g~--~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~--~v-~~---~~~~~~-~~~~~~-~   78 (202)
                      .+.+++|+|+  ++++|.++++.+...|++|+.+.++...  +..+.+ .+++..  .+ .|   +++... +.+... .
T Consensus         6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~--~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~   83 (256)
T PRK07889          6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRAL--RLTERIAKRLPEPAPVLELDVTNEEHLASLADRVREHV   83 (256)
T ss_pred             cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccch--hHHHHHHHhcCCCCcEEeCCCCCHHHHHHHHHHHHHHc
Confidence            4689999999  7899999999888899998887754311  122222 334321  11 12   333333 333221 2


Q ss_pred             CCCeEEEecCCC
Q psy2961          79 PKPKLALNCVGG   90 (202)
Q Consensus        79 ~~~d~vid~~g~   90 (202)
                      +++|++|.++|.
T Consensus        84 g~iD~li~nAG~   95 (256)
T PRK07889         84 DGLDGVVHSIGF   95 (256)
T ss_pred             CCCcEEEEcccc
Confidence            579999998863

>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional

Probab=97.31  E-value=0.0062  Score=47.96  Aligned_cols=96  Identities=13%  Similarity=0.311  Sum_probs=63.5

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHC--CCcEEEEecCcccHHHHHHHHHhcCCceEe--ChhHHHhHH--------------
Q psy2961          12 DVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGADYVF--TEEELRNIS--------------   73 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~--g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~--~~~~~~~~~--------------   73 (202)
                      .+|.|+|++|++|..++...+..  .+++++++...+ .+...++++++++..++  +......++              
T Consensus         2 k~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n-~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~   80 (385)
T PRK05447          2 KRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKN-VELLAEQAREFRPKYVVVADEEAAKELKEALAAAGIEVLAGE   80 (385)
T ss_pred             ceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCC-HHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCceEEECh
Confidence            57999999999999999988765  578888874433 23456777888888766  322111122              


Q ss_pred             ----HhhCCCCCeEEEecCCCchH-HHHHHhcccCcEEEE
Q psy2961          74 ----RDASIPKPKLALNCVGGNSA-TNLLRTLVSKGVMVT  108 (202)
Q Consensus        74 ----~~~~~~~~d~vid~~g~~~~-~~~~~~l~~~G~~v~  108 (202)
                          +......+|+|+.+++|... ...+.+++.|-++.+
T Consensus        81 ~~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaL  120 (385)
T PRK05447         81 EGLCELAALPEADVVVAAIVGAAGLLPTLAAIRAGKRIAL  120 (385)
T ss_pred             hHHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCCCcEEE
Confidence                22223468999998877643 346677766655544

>KOG1199|consensus

Probab=97.30  E-value=0.0021  Score=44.54  Aligned_cols=80  Identities=20%  Similarity=0.309  Sum_probs=59.6

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeCh------hHHHh-HHHhhC-CCC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE------EELRN-ISRDAS-IPK   80 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~------~~~~~-~~~~~~-~~~   80 (202)
                      -+|-.-||.|+.+++|.+++..+...|+.++...-+.++   -.+.++++|...++.+      +|... +...-. -+.
T Consensus         7 ~kglvalvtggasglg~ataerlakqgasv~lldlp~sk---g~~vakelg~~~vf~padvtsekdv~aala~ak~kfgr   83 (260)
T KOG1199|consen    7 TKGLVALVTGGASGLGKATAERLAKQGASVALLDLPQSK---GADVAKELGGKVVFTPADVTSEKDVRAALAKAKAKFGR   83 (260)
T ss_pred             hcCeeEEeecCcccccHHHHHHHHhcCceEEEEeCCccc---chHHHHHhCCceEEeccccCcHHHHHHHHHHHHhhccc
Confidence            456677999999999999999999999998887766654   4688899998877743      34433 332221 245


Q ss_pred             CeEEEecCCCc
Q psy2961          81 PKLALNCVGGN   91 (202)
Q Consensus        81 ~d~vid~~g~~   91 (202)
                      .|+.++|.|-.
T Consensus        84 ld~~vncagia   94 (260)
T KOG1199|consen   84 LDALVNCAGIA   94 (260)
T ss_pred             eeeeeecccee
Confidence            89999999954

>PRK12827 short chain dehydrogenase; Provisional

Probab=97.30  E-value=0.0028  Score=46.88  Aligned_cols=81  Identities=11%  Similarity=0.091  Sum_probs=48.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHH----HHHhcCCceE-e--C---hhHHHh-HHHhhC-
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKS----YLKSLGADYV-F--T---EEELRN-ISRDAS-   77 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~----~~~~lg~~~v-~--~---~~~~~~-~~~~~~-   77 (202)
                      .+.+++|.|++|++|..+++.+...|++++.+.+......+..+    .+...+.... +  |   ..+... +.+... 
T Consensus         5 ~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   84 (249)
T PRK12827          5 DSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDAGVEE   84 (249)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            35789999999999999999888899998886543221111222    2233333321 1  2   233333 322211 


Q ss_pred             CCCCeEEEecCCC
Q psy2961          78 IPKPKLALNCVGG   90 (202)
Q Consensus        78 ~~~~d~vid~~g~   90 (202)
                      ..++|.+|.++|.
T Consensus        85 ~~~~d~vi~~ag~   97 (249)
T PRK12827         85 FGRLDILVNNAGI   97 (249)
T ss_pred             hCCCCEEEECCCC
Confidence            2468999999874

>PRK08263 short chain dehydrogenase; Provisional

Probab=97.30  E-value=0.0025  Score=48.16  Aligned_cols=76  Identities=14%  Similarity=0.202  Sum_probs=49.1

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHH-hcCCce-Ee--C---hhHHHh-HHHhhC-CCCC
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK-SLGADY-VF--T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~-~lg~~~-v~--~---~~~~~~-~~~~~~-~~~~   81 (202)
                      +.+|||+|++|++|..+++.+...|++|+.+.++++.    .+.+. .++... ++  |   .++... +..... -.++
T Consensus         3 ~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   78 (275)
T PRK08263          3 EKVWFITGASRGFGRAWTEAALERGDRVVATARDTAT----LADLAEKYGDRLLPLALDVTDRAAVFAAVETAVEHFGRL   78 (275)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHhccCCeeEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4689999999999999998888889999888877653    33332 222221 11  2   233333 322211 1478


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.++|.
T Consensus        79 d~vi~~ag~   87 (275)
T PRK08263         79 DIVVNNAGY   87 (275)
T ss_pred             CEEEECCCC
Confidence            999999874

>PRK07856 short chain dehydrogenase; Provisional

Probab=97.29  E-value=0.0022  Score=47.71  Aligned_cols=75  Identities=15%  Similarity=0.213  Sum_probs=48.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceE-eC---hhHHHh-HHHhhC-CCCCeE
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FT---EEELRN-ISRDAS-IPKPKL   83 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v-~~---~~~~~~-~~~~~~-~~~~d~   83 (202)
                      .+.+++|+|+++++|..+++.+...|++|+.+.++.+    +  .........+ .|   +++... +..... .+.+|+
T Consensus         5 ~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~----~--~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~   78 (252)
T PRK07856          5 TGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAP----E--TVDGRPAEFHAADVRDPDQVAALVDAIVERHGRLDV   78 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChh----h--hhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            4789999999999999999999889999988887653    1  1111111111 12   233333 332211 246899


Q ss_pred             EEecCCC
Q psy2961          84 ALNCVGG   90 (202)
Q Consensus        84 vid~~g~   90 (202)
                      +|.+.|.
T Consensus        79 vi~~ag~   85 (252)
T PRK07856         79 LVNNAGG   85 (252)
T ss_pred             EEECCCC
Confidence            9998873

>PRK06482 short chain dehydrogenase; Provisional

Probab=97.28  E-value=0.0026  Score=48.02  Aligned_cols=75  Identities=20%  Similarity=0.284  Sum_probs=49.1

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHh-cCCce-E--eC---hhHHHh-HHHhh-CCCCCe
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS-LGADY-V--FT---EEELRN-ISRDA-SIPKPK   82 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~-lg~~~-v--~~---~~~~~~-~~~~~-~~~~~d   82 (202)
                      .++||+|++|++|..+++.+...|++|+.+.++++.    .+.+++ .+... +  .|   .+.... +.+.. ...++|
T Consensus         3 k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~----~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   78 (276)
T PRK06482          3 KTWFITGASSGFGRGMTERLLARGDRVAATVRRPDA----LDDLKARYGDRLWVLQLDVTDSAAVRAVVDRAFAALGRID   78 (276)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHhccCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            579999999999999998888899999998887652    333332 22221 1  12   233333 33321 125689


Q ss_pred             EEEecCCC
Q psy2961          83 LALNCVGG   90 (202)
Q Consensus        83 ~vid~~g~   90 (202)
                      ++|.++|.
T Consensus        79 ~vi~~ag~   86 (276)
T PRK06482         79 VVVSNAGY   86 (276)
T ss_pred             EEEECCCC
Confidence            99999874

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=97.28  E-value=0.0015  Score=49.45  Aligned_cols=101  Identities=22%  Similarity=0.237  Sum_probs=68.1

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeC-hhHHHhHHHhhCCCCCeEEE
Q psy2961           7 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT-EEELRNISRDASIPKPKLAL   85 (202)
Q Consensus         7 ~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~-~~~~~~~~~~~~~~~~d~vi   85 (202)
                      .+.+++ |.|+|+| .+|.-++++|.-+|++|.....+.+    |+.++..+-...+-. +.+...+.+..  .+.|++|
T Consensus       165 GV~~~k-v~iiGGG-vvgtnaAkiA~glgA~Vtild~n~~----rl~~ldd~f~~rv~~~~st~~~iee~v--~~aDlvI  236 (371)
T COG0686         165 GVLPAK-VVVLGGG-VVGTNAAKIAIGLGADVTILDLNID----RLRQLDDLFGGRVHTLYSTPSNIEEAV--KKADLVI  236 (371)
T ss_pred             CCCCcc-EEEECCc-cccchHHHHHhccCCeeEEEecCHH----HHhhhhHhhCceeEEEEcCHHHHHHHh--hhccEEE
Confidence            344544 5566887 8999999999999999999988876    677776654333321 22222233332  4678998


Q ss_pred             ecC--CCch-----HHHHHHhcccCcEEEEEeccCCC
Q psy2961          86 NCV--GGNS-----ATNLLRTLVSKGVMVTYGGMSRE  115 (202)
Q Consensus        86 d~~--g~~~-----~~~~~~~l~~~G~~v~~g~~~~~  115 (202)
                      .++  .+..     +.+.++.|+||+.++.+....+.
T Consensus       237 gaVLIpgakaPkLvt~e~vk~MkpGsVivDVAiDqGG  273 (371)
T COG0686         237 GAVLIPGAKAPKLVTREMVKQMKPGSVIVDVAIDQGG  273 (371)
T ss_pred             EEEEecCCCCceehhHHHHHhcCCCcEEEEEEEcCCC
Confidence            866  2222     33478899999999999865553

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.27  E-value=0.0026  Score=50.21  Aligned_cols=93  Identities=12%  Similarity=0.048  Sum_probs=62.2

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCC-CcEEEEecCcccHHHHHHHHHhcC---Cc-eEeChhHHHhHHHhhCCCCCeEEEe
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWG-LKTINIVRNRDDIDKLKSYLKSLG---AD-YVFTEEELRNISRDASIPKPKLALN   86 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g-~~vi~~~~~~~~~~~~~~~~~~lg---~~-~v~~~~~~~~~~~~~~~~~~d~vid   86 (202)
                      .+|||+|+| .+|+.+++.+...| .+|+.++++.+    +.+.+.+..   .. ..+|-.+..++.+..  .++|+||+
T Consensus         2 ~~ilviGaG-~Vg~~va~~la~~~d~~V~iAdRs~~----~~~~i~~~~~~~v~~~~vD~~d~~al~~li--~~~d~VIn   74 (389)
T COG1748           2 MKILVIGAG-GVGSVVAHKLAQNGDGEVTIADRSKE----KCARIAELIGGKVEALQVDAADVDALVALI--KDFDLVIN   74 (389)
T ss_pred             CcEEEECCc-hhHHHHHHHHHhCCCceEEEEeCCHH----HHHHHHhhccccceeEEecccChHHHHHHH--hcCCEEEE
Confidence            578999996 99999999988888 78888888876    355554442   22 223333332233333  34599999


Q ss_pred             cCCCchHHHHH-HhcccCcEEEEEec
Q psy2961          87 CVGGNSATNLL-RTLVSKGVMVTYGG  111 (202)
Q Consensus        87 ~~g~~~~~~~~-~~l~~~G~~v~~g~  111 (202)
                      |.+......++ .|++.+=.++.+..
T Consensus        75 ~~p~~~~~~i~ka~i~~gv~yvDts~  100 (389)
T COG1748          75 AAPPFVDLTILKACIKTGVDYVDTSY  100 (389)
T ss_pred             eCCchhhHHHHHHHHHhCCCEEEccc
Confidence            99988776666 46666666776653

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=97.27  E-value=0.0031  Score=46.54  Aligned_cols=78  Identities=15%  Similarity=0.268  Sum_probs=48.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCce-Ee--C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-VF--T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-v~--~---~~~~~~-~~~~~~-~~~~   81 (202)
                      ++.+++|.|++|++|..+++.+...|+.|+...++.+.   ..+....++... ++  |   .+.... +.+... -.++
T Consensus         5 ~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   81 (245)
T PRK12936          5 SGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEK---LEALAAELGERVKIFPANLSDRDEVKALGQKAEADLEGV   81 (245)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHH---HHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            46799999999999999999988899977766655442   122223333321 11  2   233333 222211 1469


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.++|.
T Consensus        82 d~vi~~ag~   90 (245)
T PRK12936         82 DILVNNAGI   90 (245)
T ss_pred             CEEEECCCC
Confidence            999999874

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=97.26  E-value=0.0052  Score=43.27  Aligned_cols=100  Identities=22%  Similarity=0.283  Sum_probs=63.4

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHC-CCcEEEEecCcccHHHHHHHHHhcCCceEeC-hhHHHh-HHHhhCCCCCe
Q psy2961           6 NSLSPGDVVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVFT-EEELRN-ISRDASIPKPK   82 (202)
Q Consensus         6 ~~~~~g~~VlI~g~~~~vG~~~i~la~~~-g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~-~~~~~~-~~~~~~~~~~d   82 (202)
                      .++++|+.++=.|+|  .|..++++++.. ..++|++-+.++..+--..-++++|.+.+.. ..+-.+ +...   ..+|
T Consensus        30 L~~~~g~~l~DIGaG--tGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~---~~~d  104 (187)
T COG2242          30 LRPRPGDRLWDIGAG--TGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDL---PSPD  104 (187)
T ss_pred             hCCCCCCEEEEeCCC--ccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCC---CCCC
Confidence            467899988888886  588899999544 3578888877763222223335678764432 111111 2221   3689


Q ss_pred             EEEecCCCch---HHHHHHhcccCcEEEEEe
Q psy2961          83 LALNCVGGNS---ATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        83 ~vid~~g~~~---~~~~~~~l~~~G~~v~~g  110 (202)
                      .+|--.|+..   +..++..|+++|++|.-.
T Consensus       105 aiFIGGg~~i~~ile~~~~~l~~ggrlV~na  135 (187)
T COG2242         105 AIFIGGGGNIEEILEAAWERLKPGGRLVANA  135 (187)
T ss_pred             EEEECCCCCHHHHHHHHHHHcCcCCeEEEEe
Confidence            9986655332   234789999999999744

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=97.26  E-value=0.011  Score=40.86  Aligned_cols=89  Identities=11%  Similarity=0.049  Sum_probs=55.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVG   89 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~g   89 (202)
                      .|.+|+|.|+| .+|..-++.+...|++|+++.  ++    ..+.+++++.-... ...+.+    .+-.++|+||-+++
T Consensus        12 ~~~~vlVvGGG-~va~rka~~Ll~~ga~V~VIs--p~----~~~~l~~l~~i~~~-~~~~~~----~dl~~a~lViaaT~   79 (157)
T PRK06719         12 HNKVVVIIGGG-KIAYRKASGLKDTGAFVTVVS--PE----ICKEMKELPYITWK-QKTFSN----DDIKDAHLIYAATN   79 (157)
T ss_pred             CCCEEEEECCC-HHHHHHHHHHHhCCCEEEEEc--Cc----cCHHHHhccCcEEE-ecccCh----hcCCCceEEEECCC
Confidence            57899999999 899999988888999988773  33    12344445422221 122111    01157899999999


Q ss_pred             CchHHHHHHhcccCcEEEEEe
Q psy2961          90 GNSATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        90 ~~~~~~~~~~l~~~G~~v~~g  110 (202)
                      .+.....+...+..+.++.+.
T Consensus        80 d~e~N~~i~~~a~~~~~vn~~  100 (157)
T PRK06719         80 QHAVNMMVKQAAHDFQWVNVV  100 (157)
T ss_pred             CHHHHHHHHHHHHHCCcEEEC
Confidence            888776444333333355543

>KOG1209|consensus

Probab=97.26  E-value=0.0037  Score=44.95  Aligned_cols=100  Identities=19%  Similarity=0.265  Sum_probs=66.2

Q ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHH-hcCCc-eEeC---hhHHH---h-HHHhhCCC
Q psy2961          10 PGDVVIQNGA-NSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK-SLGAD-YVFT---EEELR---N-ISRDASIP   79 (202)
Q Consensus        10 ~g~~VlI~g~-~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~-~lg~~-~v~~---~~~~~---~-~~~~~~~~   79 (202)
                      ....|||.|+ .||+|.+++.-....|+.|++++++-+.    ...+. +.|.. .-+|   +++..   . +++. ..+
T Consensus         6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~----M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~-~~G   80 (289)
T KOG1209|consen    6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEP----MAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRAN-PDG   80 (289)
T ss_pred             CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccch----HhhHHHhhCCeeEEeccCChHHHHHHHHHHhhC-CCC
Confidence            4467888874 5689999999999999999999998873    55553 56642 1222   33332   2 4443 336


Q ss_pred             CCeEEEecCCCchH-------------------------HHHH--HhcccCcEEEEEeccCC
Q psy2961          80 KPKLALNCVGGNSA-------------------------TNLL--RTLVSKGVMVTYGGMSR  114 (202)
Q Consensus        80 ~~d~vid~~g~~~~-------------------------~~~~--~~l~~~G~~v~~g~~~~  114 (202)
                      ..|+.++.+|.+..                         .+.+  .+.+..|++|.+|...+
T Consensus        81 kld~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaKGtIVnvgSl~~  142 (289)
T KOG1209|consen   81 KLDLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAKGTIVNVGSLAG  142 (289)
T ss_pred             ceEEEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHccceEEEecceeE
Confidence            79999998885421                         1111  13467899999987654

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.25  E-value=0.004  Score=45.90  Aligned_cols=80  Identities=16%  Similarity=0.247  Sum_probs=49.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHH-HHHHhcCCc--eEe-C---hhHHHh-HHHhhC-CCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLK-SYLKSLGAD--YVF-T---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~-~~~~~lg~~--~v~-~---~~~~~~-~~~~~~-~~~   80 (202)
                      +..+|||+|++|++|..+++.+...|++++.++++.+...+.. ..+...+..  .+. |   .+++.. +.+... ..+
T Consensus         5 ~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~   84 (249)
T PRK12825          5 MGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEALGRRAQAVQADVTDKAALEAAVAAAVERFGR   84 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCcCCHHHHHHHHHHHHHHcCC
Confidence            3468999999999999999999999999888777665321111 122223322  111 2   233333 322211 257


Q ss_pred             CeEEEecCC
Q psy2961          81 PKLALNCVG   89 (202)
Q Consensus        81 ~d~vid~~g   89 (202)
                      +|.+|.++|
T Consensus        85 id~vi~~ag   93 (249)
T PRK12825         85 IDILVNNAG   93 (249)
T ss_pred             CCEEEECCc
Confidence            899999887

>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]

Probab=97.25  E-value=0.011  Score=44.80  Aligned_cols=150  Identities=15%  Similarity=0.164  Sum_probs=93.6

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeC--------h-----hHHHh-
Q psy2961           6 NSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT--------E-----EELRN-   71 (202)
Q Consensus         6 ~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~--------~-----~~~~~-   71 (202)
                      +.-.++..+++.|.| ..|++++-.++..|+-|...--.+.    +.++.+.+|++.+.-        |     +++.. 
T Consensus       159 agtv~pA~vlv~G~G-vagl~aiata~~lG~iVt~rdlrm~----~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~  233 (356)
T COG3288         159 AGTVSPAKVLVIGAG-VAGLAAIATAVRLGAIVTARDLRMF----KKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAK  233 (356)
T ss_pred             cccccchhhhhhhHH-HHHHHHHHHHhhcceEEehhhhhhH----HhhhhhhcccccccccccccCCCccccCCHHHHHH
Confidence            344566788999998 9999999999999996555443433    456667777654431        1     12221 


Q ss_pred             ----HHHhhCCCCCeEEEecC---CCc--h--HHHHHHhcccCcEEEEEeccCCCCcCC--CcccccccCeeEEEEech-
Q psy2961          72 ----ISRDASIPKPKLALNCV---GGN--S--ATNLLRTLVSKGVMVTYGGMSREPVQI--PTSAFIFKDITLRGHWMT-  137 (202)
Q Consensus        72 ----~~~~~~~~~~d~vid~~---g~~--~--~~~~~~~l~~~G~~v~~g~~~~~~~~~--~~~~~~~~~~~~~g~~~~-  137 (202)
                          +.+..  .++|+||-+.   |.+  .  .......|+||..+|.+..-.+.+...  +......++.++.|...- 
T Consensus       234 q~~~~a~~~--~~~DivITTAlIPGrpAP~Lvt~~mv~sMkpGSViVDlAa~~GGNce~t~pg~~v~~~gV~iig~~nlp  311 (356)
T COG3288         234 QAELVAEQA--KEVDIVITTALIPGRPAPKLVTAEMVASMKPGSVIVDLAAETGGNCELTEPGKVVTKNGVKIIGYTNLP  311 (356)
T ss_pred             HHHHHHHHh--cCCCEEEEecccCCCCCchhhHHHHHHhcCCCcEEEEehhhcCCCcccccCCeEEEeCCeEEEeecCcc
Confidence                22222  6799999877   222  1  223678999999999997666655433  223345677888886532 


Q ss_pred             hHhhhcccHHHHHHHHHHHHHHHHcC
Q psy2961         138 RWQKENKESAERKSMMNELTEMMRTG  163 (202)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~g  163 (202)
                      .....+. ...+...+-.+++++.+.
T Consensus       312 ~r~a~~a-S~LYa~Nl~~~l~ll~~~  336 (356)
T COG3288         312 GRLAAQA-SQLYATNLVNLLKLLCKK  336 (356)
T ss_pred             hhhhhhH-HHHHHHHHHHHHHHHhcc
Confidence            2222222 245666666777766543

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.24  E-value=0.0039  Score=46.26  Aligned_cols=76  Identities=13%  Similarity=0.166  Sum_probs=47.6

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHH-HhcCCce-Ee--C---hhHHHh-HHHhh--CCCC
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGADY-VF--T---EEELRN-ISRDA--SIPK   80 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~-v~--~---~~~~~~-~~~~~--~~~~   80 (202)
                      +.+++|+|++|++|..++..+...|++|+.+.++...   +.+.+ .+++... ++  |   ++++.. +.+..  .+.+
T Consensus         5 ~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~~---~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~   81 (253)
T PRK08642          5 EQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSED---AAEALADELGDRAIALQADVTDREQVQAMFATATEHFGKP   81 (253)
T ss_pred             CCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCHH---HHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence            5789999999999999999988999998877654432   22222 3343221 11  2   333333 33221  1234


Q ss_pred             CeEEEecCC
Q psy2961          81 PKLALNCVG   89 (202)
Q Consensus        81 ~d~vid~~g   89 (202)
                      +|++|.+.|
T Consensus        82 id~li~~ag   90 (253)
T PRK08642         82 ITTVVNNAL   90 (253)
T ss_pred             CeEEEECCC
Confidence            999999875

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=97.22  E-value=0.0039  Score=45.97  Aligned_cols=103  Identities=17%  Similarity=0.203  Sum_probs=66.3

Q ss_pred             ccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCC--cEEEEecCcccHHHHHHHHHhcCCceEeC--hhHHHhHHHhhCC
Q psy2961           3 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGL--KTINIVRNRDDIDKLKSYLKSLGADYVFT--EEELRNISRDASI   78 (202)
Q Consensus         3 ~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~--~vi~~~~~~~~~~~~~~~~~~lg~~~v~~--~~~~~~~~~~~~~   78 (202)
                      ..+.++.||++|+=.|.|  .|.+++.||+..|.  +|+..-..++..+-.++-++++|....+.  ..|   +.+...+
T Consensus        87 ~~~~gi~pg~rVlEAGtG--SG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~D---v~~~~~~  161 (256)
T COG2519          87 VARLGISPGSRVLEAGTG--SGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGD---VREGIDE  161 (256)
T ss_pred             HHHcCCCCCCEEEEcccC--chHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecc---ccccccc
Confidence            346788999999887776  58899999998875  67776666553333334445555433221  123   3333334


Q ss_pred             CCCeEEEecCCCc-h-HHHHHHhcccCcEEEEEe
Q psy2961          79 PKPKLALNCVGGN-S-ATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        79 ~~~d~vid~~g~~-~-~~~~~~~l~~~G~~v~~g  110 (202)
                      ..+|.+|=-...| . ...+.+.|++||+++.+.
T Consensus       162 ~~vDav~LDmp~PW~~le~~~~~Lkpgg~~~~y~  195 (256)
T COG2519         162 EDVDAVFLDLPDPWNVLEHVSDALKPGGVVVVYS  195 (256)
T ss_pred             cccCEEEEcCCChHHHHHHHHHHhCCCcEEEEEc
Confidence            5788876444443 3 345889999999999986

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=97.22  E-value=0.0091  Score=41.21  Aligned_cols=89  Identities=13%  Similarity=0.243  Sum_probs=56.9

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHh--cCCceEeChhHHHhHHHhhCCCCCeEEE
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS--LGADYVFTEEELRNISRDASIPKPKLAL   85 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~--lg~~~v~~~~~~~~~~~~~~~~~~d~vi   85 (202)
                      +-.|.+++|.|=| -+|.-.++.++.+|++|+++-..+-      ..+++  -|... ..      +.+..  ...|++|
T Consensus        20 ~l~Gk~vvV~GYG-~vG~g~A~~lr~~Ga~V~V~e~DPi------~alqA~~dGf~v-~~------~~~a~--~~adi~v   83 (162)
T PF00670_consen   20 MLAGKRVVVIGYG-KVGKGIARALRGLGARVTVTEIDPI------RALQAAMDGFEV-MT------LEEAL--RDADIFV   83 (162)
T ss_dssp             --TTSEEEEE--S-HHHHHHHHHHHHTT-EEEEE-SSHH------HHHHHHHTT-EE-E-------HHHHT--TT-SEEE
T ss_pred             eeCCCEEEEeCCC-cccHHHHHHHhhCCCEEEEEECChH------HHHHhhhcCcEe-cC------HHHHH--hhCCEEE
Confidence            4579999999999 9999999999999999888775542      33333  34432 21      22222  4679999


Q ss_pred             ecCCCchH--HHHHHhcccCcEEEEEecc
Q psy2961          86 NCVGGNSA--TNLLRTLVSKGVMVTYGGM  112 (202)
Q Consensus        86 d~~g~~~~--~~~~~~l~~~G~~v~~g~~  112 (202)
                      .++|....  .+-++.|+++.-+..+|..
T Consensus        84 taTG~~~vi~~e~~~~mkdgail~n~Gh~  112 (162)
T PF00670_consen   84 TATGNKDVITGEHFRQMKDGAILANAGHF  112 (162)
T ss_dssp             E-SSSSSSB-HHHHHHS-TTEEEEESSSS
T ss_pred             ECCCCccccCHHHHHHhcCCeEEeccCcC
Confidence            99998764  4578889998888887743

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK06523 short chain dehydrogenase; Provisional

Probab=97.21  E-value=0.00075  Score=50.46  Aligned_cols=37  Identities=16%  Similarity=0.319  Sum_probs=32.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      .|.+|||+|+++++|..+++.+...|++|+.+.++.+
T Consensus         8 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~   44 (260)
T PRK06523          8 AGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRP   44 (260)
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChh
Confidence            5789999999999999999998889999998887653

>PRK06101 short chain dehydrogenase; Provisional

Probab=97.20  E-value=0.0037  Score=46.20  Aligned_cols=35  Identities=26%  Similarity=0.313  Sum_probs=30.6

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      .+++|+|++|++|..++..+...|++|+.+.++++
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~   36 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGWQVIACGRNQS   36 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            57999999999999988888889999988887654

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=97.19  E-value=0.0039  Score=43.56  Aligned_cols=77  Identities=12%  Similarity=0.160  Sum_probs=53.2

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCV   88 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~   88 (202)
                      -.|.+|+|.|+|..+|..+++.+...|++++.+.++.+                     ++.+   ..  ..+|+||-++
T Consensus        42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~---------------------~l~~---~l--~~aDiVIsat   95 (168)
T cd01080          42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTK---------------------NLKE---HT--KQADIVIVAV   95 (168)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCch---------------------hHHH---HH--hhCCEEEEcC
Confidence            47899999999955799899999999997665554321                     1111   11  4679999999


Q ss_pred             CCchHHHHHHhcccCcEEEEEecc
Q psy2961          89 GGNSATNLLRTLVSKGVMVTYGGM  112 (202)
Q Consensus        89 g~~~~~~~~~~l~~~G~~v~~g~~  112 (202)
                      +.+... ....++++-.++.++.+
T Consensus        96 ~~~~ii-~~~~~~~~~viIDla~p  118 (168)
T cd01080          96 GKPGLV-KGDMVKPGAVVIDVGIN  118 (168)
T ss_pred             CCCcee-cHHHccCCeEEEEccCC
Confidence            987732 23456777677777643

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.16  E-value=0.0057  Score=45.62  Aligned_cols=35  Identities=14%  Similarity=0.167  Sum_probs=30.0

Q ss_pred             CCCEEEEeCCCc--HHHHHHHHHHHHCCCcEEEEecC
Q psy2961          10 PGDVVIQNGANS--ACGQNVIQIARHWGLKTINIVRN   44 (202)
Q Consensus        10 ~g~~VlI~g~~~--~vG~~~i~la~~~g~~vi~~~~~   44 (202)
                      .+.+|||+|+++  ++|..++..+...|++|+.+.++
T Consensus         4 ~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~   40 (256)
T PRK12748          4 MKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWS   40 (256)
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCC
Confidence            457899999984  89999998888889999988776

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=97.15  E-value=0.0038  Score=47.68  Aligned_cols=35  Identities=14%  Similarity=0.044  Sum_probs=28.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCc-EEEEecCc
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNR   45 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~-vi~~~~~~   45 (202)
                      .+.+++|+|+| ++|.+++..+...|++ ++.+.++.
T Consensus       125 ~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        125 KGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             CCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            46899999996 9999999888899997 55555554

>KOG1210|consensus

Probab=97.14  E-value=0.0039  Score=47.33  Aligned_cols=81  Identities=14%  Similarity=0.104  Sum_probs=54.8

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCce-----------EeChhHHHh-HHH
Q psy2961           7 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-----------VFTEEELRN-ISR   74 (202)
Q Consensus         7 ~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-----------v~~~~~~~~-~~~   74 (202)
                      +.++.-.|+|.|+++++|++++..++..|+.|..++++.+++.+   ..+.++...           +.+|+..+. +.+
T Consensus        29 ~~k~~~hi~itggS~glgl~la~e~~~~ga~Vti~ar~~~kl~~---a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~  105 (331)
T KOG1210|consen   29 KPKPRRHILITGGSSGLGLALALECKREGADVTITARSGKKLLE---AKAELELLTQVEDVSYKSVDVIDYDSVSKVIEE  105 (331)
T ss_pred             ccCccceEEEecCcchhhHHHHHHHHHccCceEEEeccHHHHHH---HHhhhhhhhccceeeEeccccccHHHHHHHHhh
Confidence            34555789999999999999999999999999999998874322   223333211           123443333 333


Q ss_pred             hh-CCCCCeEEEecCCC
Q psy2961          75 DA-SIPKPKLALNCVGG   90 (202)
Q Consensus        75 ~~-~~~~~d~vid~~g~   90 (202)
                      .- ....+|.+|.|.|.
T Consensus       106 l~~~~~~~d~l~~cAG~  122 (331)
T KOG1210|consen  106 LRDLEGPIDNLFCCAGV  122 (331)
T ss_pred             hhhccCCcceEEEecCc
Confidence            21 12468999999985

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=97.13  E-value=0.0072  Score=39.55  Aligned_cols=102  Identities=23%  Similarity=0.334  Sum_probs=61.0

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCC-CcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHh-HHHhhCCCCC
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWG-LKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRN-ISRDASIPKP   81 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g-~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~-~~~~~~~~~~   81 (202)
                      ...+.++++|+-.|+|  .|..+..+++..+ .+++++..++...+...+.++.++...+. -..+... ....  ...+
T Consensus        14 ~~~~~~~~~vldlG~G--~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~   89 (124)
T TIGR02469        14 KLRLRPGDVLWDIGAG--SGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDS--LPEP   89 (124)
T ss_pred             HcCCCCCCEEEEeCCC--CCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhh--cCCC
Confidence            3456778899999997  4899999999864 56777766655332222333444433221 0111111 1111  1479


Q ss_pred             eEEEecCCCch----HHHHHHhcccCcEEEEEe
Q psy2961          82 KLALNCVGGNS----ATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        82 d~vid~~g~~~----~~~~~~~l~~~G~~v~~g  110 (202)
                      |+|+-..+...    +..+.+.|+++|.++...
T Consensus        90 D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~~  122 (124)
T TIGR02469        90 DRVFIGGSGGLLQEILEAIWRRLRPGGRIVLNA  122 (124)
T ss_pred             CEEEECCcchhHHHHHHHHHHHcCCCCEEEEEe
Confidence            99987554333    234778999999998754

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.12  E-value=0.0045  Score=46.88  Aligned_cols=77  Identities=12%  Similarity=0.173  Sum_probs=58.4

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCV   88 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~   88 (202)
                      -.|.+|+|.|.|.-+|.-+++++...|++|+++.+...                     ++   .+.+  ..+|+||-++
T Consensus       156 l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~---------------------~l---~~~~--~~ADIVIsAv  209 (286)
T PRK14175        156 LEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSK---------------------DM---ASYL--KDADVIVSAV  209 (286)
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCch---------------------hH---HHHH--hhCCEEEECC
Confidence            36899999999977999999999999998887664321                     11   1111  5679999999


Q ss_pred             CCchHHHHHHhcccCcEEEEEecc
Q psy2961          89 GGNSATNLLRTLVSKGVMVTYGGM  112 (202)
Q Consensus        89 g~~~~~~~~~~l~~~G~~v~~g~~  112 (202)
                      |.+.+... +.++++..++.+|..
T Consensus       210 g~p~~i~~-~~vk~gavVIDvGi~  232 (286)
T PRK14175        210 GKPGLVTK-DVVKEGAVIIDVGNT  232 (286)
T ss_pred             CCCcccCH-HHcCCCcEEEEcCCC
Confidence            99875433 568999888898854

>TIGR02685 pter_reduc_Leis pteridine reductase

Probab=97.12  E-value=0.0038  Score=46.93  Aligned_cols=34  Identities=12%  Similarity=0.193  Sum_probs=29.9

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCc
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNR   45 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~   45 (202)
                      .+++|+|+++++|..+++.+...|++|+.++++.
T Consensus         2 ~~~lITGas~gIG~~~a~~l~~~G~~V~~~~~~~   35 (267)
T TIGR02685         2 PAAVVTGAAKRIGSSIAVALHQEGYRVVLHYHRS   35 (267)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHhCCCeEEEEcCCc
Confidence            4789999999999999999999999998877553

Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=97.11  E-value=0.053  Score=39.67  Aligned_cols=113  Identities=7%  Similarity=-0.120  Sum_probs=65.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVG   89 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~g   89 (202)
                      .|.+|||.||| .++.-=++.+...|++|.+++..-..   ....+.+.|.-..+. .++.. .. .  .++++||-|++
T Consensus        24 ~~~~VLVVGGG-~VA~RK~~~Ll~~gA~VtVVap~i~~---el~~l~~~~~i~~~~-r~~~~-~d-l--~g~~LViaATd   94 (223)
T PRK05562         24 NKIKVLIIGGG-KAAFIKGKTFLKKGCYVYILSKKFSK---EFLDLKKYGNLKLIK-GNYDK-EF-I--KDKHLIVIATD   94 (223)
T ss_pred             CCCEEEEECCC-HHHHHHHHHHHhCCCEEEEEcCCCCH---HHHHHHhCCCEEEEe-CCCCh-HH-h--CCCcEEEECCC
Confidence            46799999999 88888778888899998877644321   222232223222221 11111 00 1  57899999999


Q ss_pred             CchHHH-HHHhcccCcEEEEEeccCCCCcCCCcccccccC-eeEE
Q psy2961          90 GNSATN-LLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKD-ITLR  132 (202)
Q Consensus        90 ~~~~~~-~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~-~~~~  132 (202)
                      .+.... +....+..+.++.+...+. ...+-.+..+.++ +++.
T Consensus        95 D~~vN~~I~~~a~~~~~lvn~vd~p~-~~dFi~PAiv~rg~l~Ia  138 (223)
T PRK05562         95 DEKLNNKIRKHCDRLYKLYIDCSDYK-KGLCIIPYQRSTKNFVFA  138 (223)
T ss_pred             CHHHHHHHHHHHHHcCCeEEEcCCcc-cCeEEeeeEEecCCEEEE
Confidence            888877 4455555577776653332 2333334444443 4443

>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.10  E-value=0.0056  Score=45.73  Aligned_cols=82  Identities=12%  Similarity=0.161  Sum_probs=49.9

Q ss_pred             CCCCEEEEeCCC--cHHHHHHHHHHHHCCCcEEEEecCc-----------ccHHHHHHHHHhcCCceEe---C---hhHH
Q psy2961           9 SPGDVVIQNGAN--SACGQNVIQIARHWGLKTINIVRNR-----------DDIDKLKSYLKSLGADYVF---T---EEEL   69 (202)
Q Consensus         9 ~~g~~VlI~g~~--~~vG~~~i~la~~~g~~vi~~~~~~-----------~~~~~~~~~~~~lg~~~v~---~---~~~~   69 (202)
                      -.|.+++|+|++  +++|..+++.+...|++|+.++++.           ++..+..+.+++.|.....   |   .++.
T Consensus         4 l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~i   83 (256)
T PRK12859          4 LKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDAP   83 (256)
T ss_pred             cCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHH
Confidence            357899999998  4899999999999999988875321           1101112333445543222   2   3444


Q ss_pred             Hh-HHHhhC-CCCCeEEEecCCC
Q psy2961          70 RN-ISRDAS-IPKPKLALNCVGG   90 (202)
Q Consensus        70 ~~-~~~~~~-~~~~d~vid~~g~   90 (202)
                      .+ +.+... -+.+|++|.++|.
T Consensus        84 ~~~~~~~~~~~g~id~li~~ag~  106 (256)
T PRK12859         84 KELLNKVTEQLGYPHILVNNAAY  106 (256)
T ss_pred             HHHHHHHHHHcCCCcEEEECCCC
Confidence            44 333321 1468999998873

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.06  E-value=0.0053  Score=46.64  Aligned_cols=78  Identities=13%  Similarity=0.144  Sum_probs=55.9

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEec
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNC   87 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~   87 (202)
                      .-.|.+|+|.|.|+-+|..+++++...|+.| .+|.+..     .+                  +.+.+  ..+|++|.+
T Consensus       156 ~l~Gk~vvViG~gg~vGkpia~~L~~~gatV-tv~~~~t-----~~------------------L~~~~--~~aDIvI~A  209 (283)
T PRK14192        156 ELAGKHAVVVGRSAILGKPMAMMLLNANATV-TICHSRT-----QN------------------LPELV--KQADIIVGA  209 (283)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHhCCCEE-EEEeCCc-----hh------------------HHHHh--ccCCEEEEc
Confidence            3578999999999669999999999999954 4443321     11                  11111  468999999


Q ss_pred             CCCchHHHHHHhcccCcEEEEEecc
Q psy2961          88 VGGNSATNLLRTLVSKGVMVTYGGM  112 (202)
Q Consensus        88 ~g~~~~~~~~~~l~~~G~~v~~g~~  112 (202)
                      +|.+... ..+.++++..++.+|..
T Consensus       210 tG~~~~v-~~~~lk~gavViDvg~n  233 (283)
T PRK14192        210 VGKPELI-KKDWIKQGAVVVDAGFH  233 (283)
T ss_pred             cCCCCcC-CHHHcCCCCEEEEEEEe
Confidence            9876632 24678999999998844

>PLN02240 UDP-glucose 4-epimerase

Probab=97.06  E-value=0.0062  Score=47.64  Aligned_cols=80  Identities=13%  Similarity=0.150  Sum_probs=47.7

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhc----C--CceEe-ChhHHHhHHHhhCCCCCeE
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL----G--ADYVF-TEEELRNISRDASIPKPKL   83 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~l----g--~~~v~-~~~~~~~~~~~~~~~~~d~   83 (202)
                      +.+|+|.|++|.+|..+++.+...|.+|+++.+...........+...    +  ...+. |-.+...+.+.....++|+
T Consensus         5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~d~   84 (352)
T PLN02240          5 GRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTRFDA   84 (352)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCCCCE
Confidence            578999999999999999988888999888865432111111222211    1  22222 2222222333332247899


Q ss_pred             EEecCCC
Q psy2961          84 ALNCVGG   90 (202)
Q Consensus        84 vid~~g~   90 (202)
                      ||++++.
T Consensus        85 vih~a~~   91 (352)
T PLN02240         85 VIHFAGL   91 (352)
T ss_pred             EEEcccc
Confidence            9999863

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=97.06  E-value=0.0048  Score=47.79  Aligned_cols=37  Identities=22%  Similarity=0.290  Sum_probs=32.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      .+.+|||+|++|.+|..+++.+...|++|++++++.+
T Consensus         4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~   40 (325)
T PLN02989          4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPK   40 (325)
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCc
Confidence            4689999999999999999999999999888776654

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=97.05  E-value=0.0034  Score=47.06  Aligned_cols=74  Identities=18%  Similarity=0.237  Sum_probs=48.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceE-eC---hhHHHh-HHHhhC-CCCCeE
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FT---EEELRN-ISRDAS-IPKPKL   83 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v-~~---~~~~~~-~~~~~~-~~~~d~   83 (202)
                      .+.+++|+|+++++|.++++.+...|++|+.+.++++.    .+   ......+ .|   +.+... +.+... -+++|+
T Consensus         8 ~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~----~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~   80 (266)
T PRK06171          8 QGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGD----GQ---HENYQFVPTDVSSAEEVNHTVAEIIEKFGRIDG   80 (266)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCccc----cc---cCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            46899999999999999999999999999888766542    11   1111111 12   334433 333211 146899


Q ss_pred             EEecCCC
Q psy2961          84 ALNCVGG   90 (202)
Q Consensus        84 vid~~g~   90 (202)
                      +|.+.|.
T Consensus        81 li~~Ag~   87 (266)
T PRK06171         81 LVNNAGI   87 (266)
T ss_pred             EEECCcc
Confidence            9998873

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=97.03  E-value=0.006  Score=52.16  Aligned_cols=81  Identities=14%  Similarity=0.178  Sum_probs=51.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHH-hcCCceE----eC---hhHHHh-HHHhhC-CC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK-SLGADYV----FT---EEELRN-ISRDAS-IP   79 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~-~lg~~~v----~~---~~~~~~-~~~~~~-~~   79 (202)
                      .+.+|||+|++|++|.++++.+...|++|+.+.++.+...+..+.+. ..+...+    .|   ..+... +.+... -+
T Consensus       413 ~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~~g  492 (676)
T TIGR02632       413 ARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALAYG  492 (676)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            47899999999999999999888899999988877653222222222 1232111    12   333333 333211 24


Q ss_pred             CCeEEEecCCC
Q psy2961          80 KPKLALNCVGG   90 (202)
Q Consensus        80 ~~d~vid~~g~   90 (202)
                      ++|++|.++|.
T Consensus       493 ~iDilV~nAG~  503 (676)
T TIGR02632       493 GVDIVVNNAGI  503 (676)
T ss_pred             CCcEEEECCCC
Confidence            79999999874

>PRK07069 short chain dehydrogenase; Validated

Probab=97.02  E-value=0.0066  Score=44.98  Aligned_cols=78  Identities=15%  Similarity=0.207  Sum_probs=47.4

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecC-cccHHHHHHHHHhc-CCceE----eC---hhHHHh-HHHhhC-CCCC
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRN-RDDIDKLKSYLKSL-GADYV----FT---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~-~~~~~~~~~~~~~l-g~~~v----~~---~~~~~~-~~~~~~-~~~~   81 (202)
                      +++|+|+++++|..+++.+...|++|+.+.++ .+..++..+.+++. +...+    .|   .+.+.. +.+... -+++
T Consensus         1 ~ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   80 (251)
T PRK07069          1 RAFITGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMGGL   80 (251)
T ss_pred             CEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcCCc
Confidence            37999999999999999988899999888876 33221122222222 22111    12   233333 332211 2468


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.++|.
T Consensus        81 d~vi~~ag~   89 (251)
T PRK07069         81 SVLVNNAGV   89 (251)
T ss_pred             cEEEECCCc
Confidence            999999873

>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative

Probab=97.01  E-value=0.0063  Score=44.79  Aligned_cols=76  Identities=13%  Similarity=0.150  Sum_probs=47.1

Q ss_pred             EEEeCCCcHHHHHHHHHHHHCCCcEEEEecCccc-HHHHHHHHHhcCCce-Ee--C---hhHHHh-HHHhh-CCCCCeEE
Q psy2961          14 VIQNGANSACGQNVIQIARHWGLKTINIVRNRDD-IDKLKSYLKSLGADY-VF--T---EEELRN-ISRDA-SIPKPKLA   84 (202)
Q Consensus        14 VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~-~~~~~~~~~~lg~~~-v~--~---~~~~~~-~~~~~-~~~~~d~v   84 (202)
                      |+|+|+++++|..+++.+...|++++.++++++. ..+..+.+++.+... ++  |   .++... +.+.. ..+.+|.+
T Consensus         1 vlItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i~~l   80 (239)
T TIGR01831         1 VLVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQAQGGNARLLQFDVADRVACRTLLEADIAEHGAYYGV   80 (239)
T ss_pred             CEEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            5899999999999999999999998888766432 112223334444321 11  2   333333 33321 12468999


Q ss_pred             EecCC
Q psy2961          85 LNCVG   89 (202)
Q Consensus        85 id~~g   89 (202)
                      +.+.|
T Consensus        81 i~~ag   85 (239)
T TIGR01831        81 VLNAG   85 (239)
T ss_pred             EECCC
Confidence            88876

This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=97.01  E-value=0.0053  Score=44.60  Aligned_cols=101  Identities=22%  Similarity=0.217  Sum_probs=59.4

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHh-HHHhhCCCCC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRN-ISRDASIPKP   81 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~-~~~~~~~~~~   81 (202)
                      +..+++++++||-.|+|+  |..+..+++.. .+++++..+++......+.++.++...+. ...+..+ ..   ....+
T Consensus        72 ~~l~~~~~~~VLeiG~Gs--G~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~~f  145 (212)
T PRK00312         72 ELLELKPGDRVLEIGTGS--GYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWP---AYAPF  145 (212)
T ss_pred             HhcCCCCCCEEEEECCCc--cHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCC---cCCCc
Confidence            345678999999999874  55666666654 47777766654322223344445543221 1112111 11   12568


Q ss_pred             eEEEecCCCchHH-HHHHhcccCcEEEEEe
Q psy2961          82 KLALNCVGGNSAT-NLLRTLVSKGVMVTYG  110 (202)
Q Consensus        82 d~vid~~g~~~~~-~~~~~l~~~G~~v~~g  110 (202)
                      |+|+-...-.... .+.+.|+++|+++..-
T Consensus       146 D~I~~~~~~~~~~~~l~~~L~~gG~lv~~~  175 (212)
T PRK00312        146 DRILVTAAAPEIPRALLEQLKEGGILVAPV  175 (212)
T ss_pred             CEEEEccCchhhhHHHHHhcCCCcEEEEEE
Confidence            9987655444433 3778999999998764

>PLN00016 RNA-binding protein; Provisional

Probab=97.01  E-value=0.0086  Score=47.53  Aligned_cols=98  Identities=13%  Similarity=0.091  Sum_probs=62.5

Q ss_pred             CCEEEEe----CCCcHHHHHHHHHHHHCCCcEEEEecCcccHHH-------HHHHHHhcCCceEe-ChhHHHhHHHhhCC
Q psy2961          11 GDVVIQN----GANSACGQNVIQIARHWGLKTINIVRNRDDIDK-------LKSYLKSLGADYVF-TEEELRNISRDASI   78 (202)
Q Consensus        11 g~~VlI~----g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~-------~~~~~~~lg~~~v~-~~~~~~~~~~~~~~   78 (202)
                      ..+|||+    |++|.+|..+++.+...|.+|++++++......       ....+...+...+. |..++..+   ...
T Consensus        52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~~---~~~  128 (378)
T PLN00016         52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPADVKSK---VAG  128 (378)
T ss_pred             cceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHHHHhh---hcc
Confidence            4579999    999999999999988899999999987652100       01122233455443 44443331   223


Q ss_pred             CCCeEEEecCCCch--HHHHHHhcccC--cEEEEEec
Q psy2961          79 PKPKLALNCVGGNS--ATNLLRTLVSK--GVMVTYGG  111 (202)
Q Consensus        79 ~~~d~vid~~g~~~--~~~~~~~l~~~--G~~v~~g~  111 (202)
                      .++|+||++.+...  ...+++.++..  .++|.++.
T Consensus       129 ~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~SS  165 (378)
T PLN00016        129 AGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCSS  165 (378)
T ss_pred             CCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence            57999999987543  22356655433  37887664

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=97.00  E-value=0.0065  Score=43.69  Aligned_cols=100  Identities=16%  Similarity=0.119  Sum_probs=57.6

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCCCeE
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKL   83 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~   83 (202)
                      ..+..++.+||-.|+|  .|..+..+++. |.+|+++..+++..+...+.+...+...+. ...|+..   ..-...+|+
T Consensus        25 ~l~~~~~~~vLDiGcG--~G~~a~~La~~-g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~---~~~~~~fD~   98 (197)
T PRK11207         25 AVKVVKPGKTLDLGCG--NGRNSLYLAAN-GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNN---LTFDGEYDF   98 (197)
T ss_pred             hcccCCCCcEEEECCC--CCHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhh---CCcCCCcCE
Confidence            3455677899999997  47788888875 888888877765322222222333332211 0112211   111246999


Q ss_pred             EEecCCC----c-----hHHHHHHhcccCcEEEEEe
Q psy2961          84 ALNCVGG----N-----SATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        84 vid~~g~----~-----~~~~~~~~l~~~G~~v~~g  110 (202)
                      |+.+..-    +     .+..+.++|+|+|.++.+.
T Consensus        99 I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~  134 (197)
T PRK11207         99 ILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA  134 (197)
T ss_pred             EEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            9876431    1     1223667899999976544

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=96.98  E-value=0.0078  Score=47.25  Aligned_cols=40  Identities=15%  Similarity=0.182  Sum_probs=34.1

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961           7 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus         7 ~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      +-..+.+|||+|++|.+|..+++.+...|.+|+++.++.+
T Consensus         6 ~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~   45 (353)
T PLN02896          6 RESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPA   45 (353)
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChH
Confidence            3456789999999999999999998889999998876654

>PRK04148 hypothetical protein; Provisional

Probab=96.96  E-value=0.0061  Score=40.72  Aligned_cols=83  Identities=17%  Similarity=0.137  Sum_probs=54.4

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh--HHHhhCCCCCeEEEe
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN--ISRDASIPKPKLALN   86 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~--~~~~~~~~~~d~vid   86 (202)
                      ..+.++++.|.|  .|...+..+...|.+|+++..+++    ..+.+++.+.+.+.+.  +.+  +...   .++|+++.
T Consensus        15 ~~~~kileIG~G--fG~~vA~~L~~~G~~ViaIDi~~~----aV~~a~~~~~~~v~dD--lf~p~~~~y---~~a~liys   83 (134)
T PRK04148         15 GKNKKIVELGIG--FYFKVAKKLKESGFDVIVIDINEK----AVEKAKKLGLNAFVDD--LFNPNLEIY---KNAKLIYS   83 (134)
T ss_pred             ccCCEEEEEEec--CCHHHHHHHHHCCCEEEEEECCHH----HHHHHHHhCCeEEECc--CCCCCHHHH---hcCCEEEE
Confidence            356789999998  576555566678999999988776    5777888877666532  111  1111   46788887


Q ss_pred             cCCCchHHH-HHHhccc
Q psy2961          87 CVGGNSATN-LLRTLVS  102 (202)
Q Consensus        87 ~~g~~~~~~-~~~~l~~  102 (202)
                      .-..+..+. ++++.+.
T Consensus        84 irpp~el~~~~~~la~~  100 (134)
T PRK04148         84 IRPPRDLQPFILELAKK  100 (134)
T ss_pred             eCCCHHHHHHHHHHHHH
Confidence            777666655 4444433

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=96.95  E-value=0.0032  Score=46.93  Aligned_cols=98  Identities=13%  Similarity=0.111  Sum_probs=59.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHH-Hh-cCCceEe-ChhH-HHhHHHhhCCCCCeEEE
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KS-LGADYVF-TEEE-LRNISRDASIPKPKLAL   85 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~-~~-lg~~~v~-~~~~-~~~~~~~~~~~~~d~vi   85 (202)
                      .+.+|+|+|++|.+|..+++.+...|.+|++++++.+.    .... .. .++..+. |..+ ...+.+.. +.++|+||
T Consensus        16 ~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~----~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~-~~~~d~vi   90 (251)
T PLN00141         16 KTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDK----AKTSLPQDPSLQIVRADVTEGSDKLVEAI-GDDSDAVI   90 (251)
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHH----HHHhcccCCceEEEEeeCCCCHHHHHHHh-hcCCCEEE
Confidence            46799999999999999998888889999988877652    2222 11 1232222 3222 12232322 13689999


Q ss_pred             ecCCCch--------------HHHHHHhccc--CcEEEEEecc
Q psy2961          86 NCVGGNS--------------ATNLLRTLVS--KGVMVTYGGM  112 (202)
Q Consensus        86 d~~g~~~--------------~~~~~~~l~~--~G~~v~~g~~  112 (202)
                      .+.|...              ...+++.+..  .++++.++..
T Consensus        91 ~~~g~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~  133 (251)
T PLN00141         91 CATGFRRSFDPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSI  133 (251)
T ss_pred             ECCCCCcCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEEccc
Confidence            8876421              1224444433  3688887754

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=96.94  E-value=0.0056  Score=47.38  Aligned_cols=37  Identities=19%  Similarity=0.255  Sum_probs=32.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      .|.+|||+|++|.+|..+++.+...|.+|++++++.+
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~   40 (322)
T PLN02986          4 GGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLT   40 (322)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCc
Confidence            4789999999999999999988888999988888765

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=96.94  E-value=0.0086  Score=43.57  Aligned_cols=103  Identities=17%  Similarity=0.156  Sum_probs=64.5

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCC--CcEEEEecCcccHHHHHHHHHhcCCceEeC--h-hHHHh-HHHhhC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWG--LKTINIVRNRDDIDKLKSYLKSLGADYVFT--E-EELRN-ISRDAS   77 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g--~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~--~-~~~~~-~~~~~~   77 (202)
                      ..++.+...+||=.|.+  +|..++.+|..+.  .+++++-.+++..+..++.+++.|.+..+.  . .+..+ +.+ ..
T Consensus        53 ~L~~~~~~k~iLEiGT~--~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~-~~  129 (219)
T COG4122          53 LLARLSGPKRILEIGTA--IGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSR-LL  129 (219)
T ss_pred             HHHHhcCCceEEEeecc--cCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHh-cc
Confidence            34556778899888875  7999999999886  344444444443333344456667765331  2 24444 544 22


Q ss_pred             CCCCeEEE-ecCCCc--hH-HHHHHhcccCcEEEEE
Q psy2961          78 IPKPKLAL-NCVGGN--SA-TNLLRTLVSKGVMVTY  109 (202)
Q Consensus        78 ~~~~d~vi-d~~g~~--~~-~~~~~~l~~~G~~v~~  109 (202)
                      .+.||+|| |+.-..  .+ ..++++|++||.++.=
T Consensus       130 ~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~D  165 (219)
T COG4122         130 DGSFDLVFIDADKADYPEYLERALPLLRPGGLIVAD  165 (219)
T ss_pred             CCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEe
Confidence            36799975 444322  23 3478999999998874

>PLN00015 protochlorophyllide reductase

Probab=96.94  E-value=0.0061  Score=46.96  Aligned_cols=73  Identities=18%  Similarity=0.164  Sum_probs=45.3

Q ss_pred             EEeCCCcHHHHHHHHHHHHCC-CcEEEEecCcccHHHHHHHHHhcC---Cce-E--eC---hhHHHh-HHHhhC-CCCCe
Q psy2961          15 IQNGANSACGQNVIQIARHWG-LKTINIVRNRDDIDKLKSYLKSLG---ADY-V--FT---EEELRN-ISRDAS-IPKPK   82 (202)
Q Consensus        15 lI~g~~~~vG~~~i~la~~~g-~~vi~~~~~~~~~~~~~~~~~~lg---~~~-v--~~---~~~~~~-~~~~~~-~~~~d   82 (202)
                      +|+|+++++|..+++.+...| ++|+.++++.+..   .+.+.+++   ... +  .|   .++... +.+... ..++|
T Consensus         1 lITGas~GIG~aia~~l~~~G~~~V~~~~r~~~~~---~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD   77 (308)
T PLN00015          1 IITGASSGLGLATAKALAETGKWHVVMACRDFLKA---ERAAKSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRSGRPLD   77 (308)
T ss_pred             CEeCCCChHHHHHHHHHHHCCCCEEEEEeCCHHHH---HHHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHhcCCCCC
Confidence            589999999999998888889 8888888766532   12223332   111 1  13   233333 333221 24689


Q ss_pred             EEEecCCC
Q psy2961          83 LALNCVGG   90 (202)
Q Consensus        83 ~vid~~g~   90 (202)
                      ++|+++|.
T Consensus        78 ~lInnAG~   85 (308)
T PLN00015         78 VLVCNAAV   85 (308)
T ss_pred             EEEECCCc
Confidence            99998873

>COG0623 FabI Enoyl-[acyl-carrier-protein]

Probab=96.94  E-value=0.089  Score=38.45  Aligned_cols=107  Identities=16%  Similarity=0.189  Sum_probs=72.0

Q ss_pred             CCCCCEEEEeCCCc--HHHHHHHHHHHHCCCcEEEEecCcccHHHHH-HHHHhcCCceEe--C---hhHH---Hh-HHHh
Q psy2961           8 LSPGDVVIQNGANS--ACGQNVIQIARHWGLKTINIVRNRDDIDKLK-SYLKSLGADYVF--T---EEEL---RN-ISRD   75 (202)
Q Consensus         8 ~~~g~~VlI~g~~~--~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~-~~~~~lg~~~v~--~---~~~~---~~-~~~~   75 (202)
                      +-.|++.||.|-+.  +++--.++.++..|++...+...+ .+.++. +.++++|.+.++  |   .++.   .+ +++.
T Consensus         3 ~L~GK~~lI~Gvan~rSIAwGIAk~l~~~GAeL~fTy~~e-~l~krv~~la~~~~s~~v~~cDV~~d~~i~~~f~~i~~~   81 (259)
T COG0623           3 LLEGKRILIMGVANNRSIAWGIAKALAEQGAELAFTYQGE-RLEKRVEELAEELGSDLVLPCDVTNDESIDALFATIKKK   81 (259)
T ss_pred             ccCCceEEEEEecccccHHHHHHHHHHHcCCEEEEEeccH-HHHHHHHHHHhhccCCeEEecCCCCHHHHHHHHHHHHHh
Confidence            34689999998654  667778999999999998888776 344443 445778887666  2   2222   22 4444


Q ss_pred             hCCCCCeEEEecCCCch------------------------------HHHHHHhcccCcEEEEEeccCCCCc
Q psy2961          76 ASIPKPKLALNCVGGNS------------------------------ATNLLRTLVSKGVMVTYGGMSREPV  117 (202)
Q Consensus        76 ~~~~~~d~vid~~g~~~------------------------------~~~~~~~l~~~G~~v~~g~~~~~~~  117 (202)
                      .  +++|.++.+.+...                              ...+..+|..||.++.+........
T Consensus        82 ~--g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~ggSiltLtYlgs~r~  151 (259)
T COG0623          82 W--GKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNNGGSILTLTYLGSERV  151 (259)
T ss_pred             h--CcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCCCCcEEEEEeccceee
Confidence            4  57899998887321                              1124557889999999876655443

>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase

Probab=96.93  E-value=0.0034  Score=46.12  Aligned_cols=77  Identities=17%  Similarity=0.267  Sum_probs=47.7

Q ss_pred             EEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc-cHHHHHHHHHhcCCceE-e--C---hhHHHh-HHHhhC-CCCCeEE
Q psy2961          14 VIQNGANSACGQNVIQIARHWGLKTINIVRNRD-DIDKLKSYLKSLGADYV-F--T---EEELRN-ISRDAS-IPKPKLA   84 (202)
Q Consensus        14 VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~-~~~~~~~~~~~lg~~~v-~--~---~~~~~~-~~~~~~-~~~~d~v   84 (202)
                      |||+|++|++|..+++.+...|++++.+.++.. ...+..+.++..+.... +  |   ..++.+ +..... -.++|.+
T Consensus         1 vlItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v   80 (239)
T TIGR01830         1 ALVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAYGVKALGVVCDVSDREDVKAVVEEIEEELGPIDIL   80 (239)
T ss_pred             CEEECCCcHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            589999999999999999889999988877652 21112233344453221 1  2   223333 222111 1468999


Q ss_pred             EecCCC
Q psy2961          85 LNCVGG   90 (202)
Q Consensus        85 id~~g~   90 (202)
                      |.+.|.
T Consensus        81 i~~ag~   86 (239)
T TIGR01830        81 VNNAGI   86 (239)
T ss_pred             EECCCC
Confidence            998874

This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.

>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=96.93  E-value=0.016  Score=41.04  Aligned_cols=78  Identities=15%  Similarity=0.188  Sum_probs=43.4

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCc-EEEEecCcc---cHHHHHHHHHhcCCceEe------ChhHHHh-HHHhhC-CCC
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLK-TINIVRNRD---DIDKLKSYLKSLGADYVF------TEEELRN-ISRDAS-IPK   80 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~-vi~~~~~~~---~~~~~~~~~~~lg~~~v~------~~~~~~~-~~~~~~-~~~   80 (202)
                      ++||+|+.|++|...++.+...++. ++.+.++..   ...+..+.+++.|....+      |++++.. +..... .+.
T Consensus         2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~~~   81 (181)
T PF08659_consen    2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRFGP   81 (181)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTSS-
T ss_pred             EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhccCC
Confidence            6899999999999999888888774 555555511   222244555666665333      2334444 333322 246


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      ++.||.+.|.
T Consensus        82 i~gVih~ag~   91 (181)
T PF08659_consen   82 IDGVIHAAGV   91 (181)
T ss_dssp             EEEEEE----
T ss_pred             cceeeeeeee
Confidence            7888887764

It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=96.92  E-value=0.0077  Score=46.85  Aligned_cols=78  Identities=10%  Similarity=0.057  Sum_probs=46.2

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCC---ceE-eChhHHHhHHHhhCCCCCeEEEecC
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA---DYV-FTEEELRNISRDASIPKPKLALNCV   88 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~---~~v-~~~~~~~~~~~~~~~~~~d~vid~~   88 (202)
                      +|||+|++|.+|..+++.+...|.+|+++.+...........+.+++.   ..+ .|-.+...+.+.....++|+||+++
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vvh~a   81 (338)
T PRK10675          2 RVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILHDHAIDTVIHFA   81 (338)
T ss_pred             eEEEECCCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhcCCCCEEEECC
Confidence            689999999999999988888899998876543221111222233322   111 1322222233333234799999987


Q ss_pred             CC
Q psy2961          89 GG   90 (202)
Q Consensus        89 g~   90 (202)
                      +.
T Consensus        82 ~~   83 (338)
T PRK10675         82 GL   83 (338)
T ss_pred             cc
Confidence            63

>TIGR00438 rrmJ cell division protein FtsJ

Probab=96.92  E-value=0.019  Score=40.87  Aligned_cols=96  Identities=22%  Similarity=0.224  Sum_probs=56.3

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHC-C-CcEEEEecCcccHHHHHHHHHhcCCceEe-Ch--hHHHh-HHHhhCC
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHW-G-LKTINIVRNRDDIDKLKSYLKSLGADYVF-TE--EELRN-ISRDASI   78 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~-g-~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~--~~~~~-~~~~~~~   78 (202)
                      ...+++|++||..|+|+  |..+..+++.. + .+++++..++.     +   ...+...+. |.  .+..+ +.+.+..
T Consensus        27 ~~~i~~g~~VLDiG~Gt--G~~~~~l~~~~~~~~~v~~vDis~~-----~---~~~~i~~~~~d~~~~~~~~~l~~~~~~   96 (188)
T TIGR00438        27 FKLIKPGDTVLDLGAAP--GGWSQVAVEQVGGKGRVIAVDLQPM-----K---PIENVDFIRGDFTDEEVLNKIRERVGD   96 (188)
T ss_pred             hcccCCCCEEEEecCCC--CHHHHHHHHHhCCCceEEEEecccc-----c---cCCCceEEEeeCCChhHHHHHHHHhCC
Confidence            45578999999999984  45566666654 3 35666655543     1   112333222 22  12223 4555555


Q ss_pred             CCCeEEEe-cC----CCc-------------hHHHHHHhcccCcEEEEEe
Q psy2961          79 PKPKLALN-CV----GGN-------------SATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        79 ~~~d~vid-~~----g~~-------------~~~~~~~~l~~~G~~v~~g  110 (202)
                      .++|+|+. ..    |..             .+..+.++|+++|+++...
T Consensus        97 ~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~  146 (188)
T TIGR00438        97 DKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV  146 (188)
T ss_pred             CCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence            67999995 22    211             1223678999999999854

>PRK08618 ornithine cyclodeaminase; Validated

Probab=96.92  E-value=0.013  Score=45.52  Aligned_cols=101  Identities=5%  Similarity=0.120  Sum_probs=63.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHH-HHHCCCcEEEEecCcccHHHHHHHHHh----cCCceEeChhHHHh-HHHhhCCCCCeE
Q psy2961          10 PGDVVIQNGANSACGQNVIQI-ARHWGLKTINIVRNRDDIDKLKSYLKS----LGADYVFTEEELRN-ISRDASIPKPKL   83 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~l-a~~~g~~vi~~~~~~~~~~~~~~~~~~----lg~~~v~~~~~~~~-~~~~~~~~~~d~   83 (202)
                      ...+++|+|+| ..|.+.+.. +...+++.+.++++..+.  ..+.+++    ++.+.. ...+..+ +      .+.|+
T Consensus       126 ~~~~v~iiGaG-~~a~~~~~al~~~~~~~~v~v~~r~~~~--a~~~~~~~~~~~~~~~~-~~~~~~~~~------~~aDi  195 (325)
T PRK08618        126 DAKTLCLIGTG-GQAKGQLEAVLAVRDIERVRVYSRTFEK--AYAFAQEIQSKFNTEIY-VVNSADEAI------EEADI  195 (325)
T ss_pred             CCcEEEEECCc-HHHHHHHHHHHhcCCccEEEEECCCHHH--HHHHHHHHHHhcCCcEE-EeCCHHHHH------hcCCE
Confidence            45689999999 788776654 446688777777655421  1222222    343321 1233333 3      46799


Q ss_pred             EEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCc
Q psy2961          84 ALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPT  121 (202)
Q Consensus        84 vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~  121 (202)
                      |+.|++.....-. .++++|-+++.+|........++.
T Consensus       196 Vi~aT~s~~p~i~-~~l~~G~hV~~iGs~~p~~~E~~~  232 (325)
T PRK08618        196 IVTVTNAKTPVFS-EKLKKGVHINAVGSFMPDMQELPS  232 (325)
T ss_pred             EEEccCCCCcchH-HhcCCCcEEEecCCCCcccccCCH
Confidence            9999987754445 899999999999866544434444

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=96.91  E-value=0.011  Score=43.64  Aligned_cols=105  Identities=15%  Similarity=0.187  Sum_probs=67.3

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCC-CcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCCCe
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWG-LKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPK   82 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g-~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~~d   82 (202)
                      ...+.+|++||=.++|  +|-.+..+++..| ++|+++.-+++-+...++.+++.|...+- ...|.+.+.  .+...||
T Consensus        46 ~~~~~~g~~vLDva~G--TGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP--f~D~sFD  121 (238)
T COG2226          46 LLGIKPGDKVLDVACG--TGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP--FPDNSFD  121 (238)
T ss_pred             hhCCCCCCEEEEecCC--ccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC--CCCCccC
Confidence            3455689999888775  6999999999887 46777777766443344444454433211 112222211  3346789


Q ss_pred             EEEecCCCc-------hHHHHHHhcccCcEEEEEeccC
Q psy2961          83 LALNCVGGN-------SATNLLRTLVSKGVMVTYGGMS  113 (202)
Q Consensus        83 ~vid~~g~~-------~~~~~~~~l~~~G~~v~~g~~~  113 (202)
                      +|.-+.|-.       .+.+..+.|+|+|+++.+-...
T Consensus       122 ~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~  159 (238)
T COG2226         122 AVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSK  159 (238)
T ss_pred             EEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence            998777632       2344788999999999886443

>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.91  E-value=0.0075  Score=46.30  Aligned_cols=33  Identities=12%  Similarity=0.193  Sum_probs=29.9

Q ss_pred             CCCEEEEeCCC--cHHHHHHHHHHHHCCCcEEEEe
Q psy2961          10 PGDVVIQNGAN--SACGQNVIQIARHWGLKTINIV   42 (202)
Q Consensus        10 ~g~~VlI~g~~--~~vG~~~i~la~~~g~~vi~~~   42 (202)
                      .|++++|+|++  +++|.++++.+...|++|+...
T Consensus         7 ~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv~~   41 (299)
T PRK06300          7 TGKIAFIAGIGDDQGYGWGIAKALAEAGATILVGT   41 (299)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEEEe
Confidence            58899999996  8999999999999999998854

>PRK08309 short chain dehydrogenase; Provisional

Probab=96.91  E-value=0.061  Score=37.97  Aligned_cols=87  Identities=11%  Similarity=0.048  Sum_probs=50.7

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHH-HhcCC--c-eE--eC---hhHHHh-HHHhhC-CCCC
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGA--D-YV--FT---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~--~-~v--~~---~~~~~~-~~~~~~-~~~~   81 (202)
                      +++|+|++ ++|..+++.+...|++|+++.++++.    .+.+ ..++.  . ..  .|   +.+... +..... .+++
T Consensus         2 ~vlVtGGt-G~gg~la~~L~~~G~~V~v~~R~~~~----~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~i   76 (177)
T PRK08309          2 HALVIGGT-GMLKRVSLWLCEKGFHVSVIARREVK----LENVKRESTTPESITPLPLDYHDDDALKLAIKSTIEKNGPF   76 (177)
T ss_pred             EEEEECcC-HHHHHHHHHHHHCcCEEEEEECCHHH----HHHHHHHhhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            58999998 56666777777789999888876643    2222 22321  1 11  13   344444 443322 2568


Q ss_pred             eEEEecCCCchHHHHHHhcccCc
Q psy2961          82 KLALNCVGGNSATNLLRTLVSKG  104 (202)
Q Consensus        82 d~vid~~g~~~~~~~~~~l~~~G  104 (202)
                      |++|+.+-......+....+..|
T Consensus        77 d~lv~~vh~~~~~~~~~~~~~~g   99 (177)
T PRK08309         77 DLAVAWIHSSAKDALSVVCRELD   99 (177)
T ss_pred             eEEEEeccccchhhHHHHHHHHc
Confidence            99999887665444444444444

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=96.90  E-value=0.0066  Score=47.14  Aligned_cols=75  Identities=9%  Similarity=0.107  Sum_probs=44.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC--CcEEEEecCcccHHHHHHHH-HhcC---CceEe-ChhHHHhHHHhhCCCCCe
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWG--LKTINIVRNRDDIDKLKSYL-KSLG---ADYVF-TEEELRNISRDASIPKPK   82 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g--~~vi~~~~~~~~~~~~~~~~-~~lg---~~~v~-~~~~~~~~~~~~~~~~~d   82 (202)
                      .|.+|||+|++|.+|..+++.+...|  .+|+++.++...    ...+ ..+.   ...+. |-.+...+.+..  .++|
T Consensus         3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~----~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~--~~iD   76 (324)
T TIGR03589         3 NNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELK----QWEMQQKFPAPCLRFFIGDVRDKERLTRAL--RGVD   76 (324)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhH----HHHHHHHhCCCcEEEEEccCCCHHHHHHHH--hcCC
Confidence            36799999999999999888777665  567766655432    2222 2222   11221 222222233333  3589


Q ss_pred             EEEecCCC
Q psy2961          83 LALNCVGG   90 (202)
Q Consensus        83 ~vid~~g~   90 (202)
                      +||.++|.
T Consensus        77 ~Vih~Ag~   84 (324)
T TIGR03589        77 YVVHAAAL   84 (324)
T ss_pred             EEEECccc
Confidence            99998873

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PRK07041 short chain dehydrogenase; Provisional

Probab=96.89  E-value=0.0079  Score=44.01  Aligned_cols=72  Identities=17%  Similarity=0.128  Sum_probs=45.2

Q ss_pred             EEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCc-eEe--C---hhHHHh-HHHhhCCCCCeEEEec
Q psy2961          15 IQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD-YVF--T---EEELRN-ISRDASIPKPKLALNC   87 (202)
Q Consensus        15 lI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~-~v~--~---~~~~~~-~~~~~~~~~~d~vid~   87 (202)
                      ||+|+++++|..+++.+...|++|+.+.++++...+..+.++ .+.. .++  |   ..+... +.+ .  +.+|++|.+
T Consensus         1 lItGas~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~-~--~~id~li~~   76 (230)
T PRK07041          1 LVVGGSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALG-GGAPVRTAALDITDEAAVDAFFAE-A--GPFDHVVIT   76 (230)
T ss_pred             CeecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh-cCCceEEEEccCCCHHHHHHHHHh-c--CCCCEEEEC
Confidence            589999999999999988999999998877553211111121 1222 122  3   233333 332 2  468999998


Q ss_pred             CCC
Q psy2961          88 VGG   90 (202)
Q Consensus        88 ~g~   90 (202)
                      +|.
T Consensus        77 ag~   79 (230)
T PRK07041         77 AAD   79 (230)
T ss_pred             CCC
Confidence            874

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=96.88  E-value=0.011  Score=44.85  Aligned_cols=92  Identities=18%  Similarity=0.133  Sum_probs=55.0

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcccHHHHHHHH-HhcCCceEeCh-hHHHhHHHhhCCCCCeEEE
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYL-KSLGADYVFTE-EELRNISRDASIPKPKLAL   85 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~~~~~~~~~~-~~lg~~~v~~~-~~~~~~~~~~~~~~~d~vi   85 (202)
                      ..+.+|+|+|+| ++|.+++..+...|+ +++++.++.+    +.+.+ +.++....+.. .+..+   ..  .++|+||
T Consensus       121 ~~~k~vlVlGaG-g~a~ai~~aL~~~g~~~V~v~~R~~~----~a~~l~~~~~~~~~~~~~~~~~~---~~--~~~DivI  190 (278)
T PRK00258        121 LKGKRILILGAG-GAARAVILPLLDLGVAEITIVNRTVE----RAEELAKLFGALGKAELDLELQE---EL--ADFDLII  190 (278)
T ss_pred             CCCCEEEEEcCc-HHHHHHHHHHHHcCCCEEEEEeCCHH----HHHHHHHHhhhccceeecccchh---cc--ccCCEEE
Confidence            356789999996 999999999999995 6666666554    23333 33322110100 01111   11  4689999


Q ss_pred             ecCCCchHH------HHHHhcccCcEEEEEe
Q psy2961          86 NCVGGNSAT------NLLRTLVSKGVMVTYG  110 (202)
Q Consensus        86 d~~g~~~~~------~~~~~l~~~G~~v~~g  110 (202)
                      +|++.....      .....+.+...++.+.
T Consensus       191 naTp~g~~~~~~~~~~~~~~l~~~~~v~Div  221 (278)
T PRK00258        191 NATSAGMSGELPLPPLPLSLLRPGTIVYDMI  221 (278)
T ss_pred             ECCcCCCCCCCCCCCCCHHHcCCCCEEEEee
Confidence            998644311      1245677777777765

>PRK07023 short chain dehydrogenase; Provisional

Probab=96.87  E-value=0.0033  Score=46.49  Aligned_cols=34  Identities=18%  Similarity=0.319  Sum_probs=30.4

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      ++||+|++|++|..+++.+...|++++.++++.+
T Consensus         3 ~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~   36 (243)
T PRK07023          3 RAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRH   36 (243)
T ss_pred             eEEEecCCcchHHHHHHHHHhCCCEEEEEecCcc
Confidence            7999999999999999988889999998887654

>TIGR01500 sepiapter_red sepiapterin reductase

Probab=96.86  E-value=0.014  Score=43.55  Aligned_cols=35  Identities=23%  Similarity=0.285  Sum_probs=27.9

Q ss_pred             EEEEeCCCcHHHHHHHHHHHH----CCCcEEEEecCccc
Q psy2961          13 VVIQNGANSACGQNVIQIARH----WGLKTINIVRNRDD   47 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~----~g~~vi~~~~~~~~   47 (202)
                      .++|+|+++++|..+++.+..    .|++|+.+.++.+.
T Consensus         2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~   40 (256)
T TIGR01500         2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEA   40 (256)
T ss_pred             EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEEcCHHH
Confidence            589999999999987754443    79999988887664

This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.86  E-value=0.017  Score=41.76  Aligned_cols=35  Identities=26%  Similarity=0.223  Sum_probs=29.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCc
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR   45 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~   45 (202)
                      ...+|+|.|+| ++|..+++.+...|...+.+++.+
T Consensus        20 ~~~~VlviG~G-glGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        20 LNSHVLIIGAG-GLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             cCCCEEEECCC-HHHHHHHHHHHHcCCCeEEEecCC
Confidence            45789999999 999999999999999777777655

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>TIGR00715 precor6x_red precorrin-6x reductase

Probab=96.86  E-value=0.0029  Score=47.34  Aligned_cols=72  Identities=10%  Similarity=0.044  Sum_probs=49.3

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCCCeEEEecCC
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNCVG   89 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~vid~~g   89 (202)
                      +|||+||+| -|..++..+...|.+|++.+.++..    .+.+...|...+. +.-+..++.+.....++|+|||++.
T Consensus         2 ~ILvlGGT~-egr~la~~L~~~g~~v~~s~~t~~~----~~~~~~~g~~~v~~g~l~~~~l~~~l~~~~i~~VIDAtH   74 (256)
T TIGR00715         2 TVLLMGGTV-DSRAIAKGLIAQGIEILVTVTTSEG----KHLYPIHQALTVHTGALDPQELREFLKRHSIDILVDATH   74 (256)
T ss_pred             eEEEEechH-HHHHHHHHHHhCCCeEEEEEccCCc----cccccccCCceEEECCCCHHHHHHHHHhcCCCEEEEcCC
Confidence            799999995 5999998888889999998888763    4555566555444 2111111333334468999999886

This enzyme was found to be a monomer by gel filtration.

>PLN02214 cinnamoyl-CoA reductase

Probab=96.85  E-value=0.0077  Score=47.15  Aligned_cols=38  Identities=26%  Similarity=0.352  Sum_probs=33.5

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      .++.+|||+|++|.+|..+++.+...|.+|++++++.+
T Consensus         8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~   45 (342)
T PLN02214          8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPD   45 (342)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCch
Confidence            35789999999999999999999999999999887654

>PRK08219 short chain dehydrogenase; Provisional

Probab=96.84  E-value=0.012  Score=42.82  Aligned_cols=75  Identities=13%  Similarity=0.067  Sum_probs=45.9

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHH-hc-CCceEe-ChhHHHhHHHhhCC-CCCeEEEe
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK-SL-GADYVF-TEEELRNISRDASI-PKPKLALN   86 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~-~l-g~~~v~-~~~~~~~~~~~~~~-~~~d~vid   86 (202)
                      ..++||+|++|++|..++..+... .+|+.+.++.++    .+.+. .. +...+. |-.+...+.+.... .++|.+|.
T Consensus         3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~----~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~   77 (227)
T PRK08219          3 RPTALITGASRGIGAAIARELAPT-HTLLLGGRPAER----LDELAAELPGATPFPVDLTDPEAIAAAVEQLGRLDVLVH   77 (227)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHH----HHHHHHHhccceEEecCCCCHHHHHHHHHhcCCCCEEEE
Confidence            358999999999999988777666 889988877653    22222 22 222221 22222222222221 36999999


Q ss_pred             cCCC
Q psy2961          87 CVGG   90 (202)
Q Consensus        87 ~~g~   90 (202)
                      ++|.
T Consensus        78 ~ag~   81 (227)
T PRK08219         78 NAGV   81 (227)
T ss_pred             CCCc
Confidence            9874

>PRK12824 acetoacetyl-CoA reductase; Provisional

Probab=96.84  E-value=0.014  Score=43.08  Aligned_cols=77  Identities=14%  Similarity=0.181  Sum_probs=47.7

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhc---CCc-eEe--C---hhHHHh-HHHhhC-CCC
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL---GAD-YVF--T---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~l---g~~-~v~--~---~~~~~~-~~~~~~-~~~   80 (202)
                      .+|+|+|++|++|..+++.+...|++|+.+.++++.  ...+....+   +.. .++  |   .+.... +..... ..+
T Consensus         3 k~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~   80 (245)
T PRK12824          3 KIALVTGAKRGIGSAIARELLNDGYRVIATYFSGND--CAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEGP   80 (245)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCcHH--HHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            479999999999999999888889999988877431  112222222   221 111  2   233333 332211 246


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|++|.+.|.
T Consensus        81 id~vi~~ag~   90 (245)
T PRK12824         81 VDILVNNAGI   90 (245)
T ss_pred             CCEEEECCCC
Confidence            9999998874

>PRK14967 putative methyltransferase; Provisional

Probab=96.84  E-value=0.022  Score=41.74  Aligned_cols=99  Identities=13%  Similarity=0.110  Sum_probs=56.6

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEE
Q psy2961           6 NSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLA   84 (202)
Q Consensus         6 ~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~v   84 (202)
                      ..++++++||-.|+|+  |..++.+++. ++ +++++..+++......+.++..+....+...|+.+   ......+|+|
T Consensus        32 ~~~~~~~~vLDlGcG~--G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~---~~~~~~fD~V  105 (223)
T PRK14967         32 EGLGPGRRVLDLCTGS--GALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR---AVEFRPFDVV  105 (223)
T ss_pred             cccCCCCeEEEecCCH--HHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh---hccCCCeeEE
Confidence            3467899999999973  8888888875 55 66666655542211122223344332222233322   1223578998


Q ss_pred             EecCCCc----------------------------hHHHHHHhcccCcEEEEEe
Q psy2961          85 LNCVGGN----------------------------SATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        85 id~~g~~----------------------------~~~~~~~~l~~~G~~v~~g  110 (202)
                      +......                            .+..+.+.|+++|+++.+.
T Consensus       106 i~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~  159 (223)
T PRK14967        106 VSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQ  159 (223)
T ss_pred             EECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            8642100                            0123567899999998754

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=96.83  E-value=0.011  Score=43.83  Aligned_cols=72  Identities=18%  Similarity=0.121  Sum_probs=47.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCc--eEe-C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD--YVF-T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~--~v~-~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .+.++||+|+++++|..+++.+...|++|+.+.++.         +...+..  .+. |   .+++.. +.+... .+++
T Consensus         7 ~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~---------~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   77 (252)
T PRK08220          7 SGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF---------LTQEDYPFATFVLDVSDAAAVAQVCQRLLAETGPL   77 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch---------hhhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            468999999999999999999888999998887654         1111211  111 2   333333 333211 2468


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.+.|.
T Consensus        78 d~vi~~ag~   86 (252)
T PRK08220         78 DVLVNAAGI   86 (252)
T ss_pred             CEEEECCCc
Confidence            999999874

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=96.82  E-value=0.0063  Score=46.12  Aligned_cols=94  Identities=19%  Similarity=0.156  Sum_probs=53.5

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCc-EEEEecCcccHHHHHHHHHhcCC-ceEeChhHHHhHHHhhCCC-CCeEEE
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLGA-DYVFTEEELRNISRDASIP-KPKLAL   85 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg~-~~v~~~~~~~~~~~~~~~~-~~d~vi   85 (202)
                      .+|++|+|.|+| |.+.+++.-++..|++ ++++.++.++.++..+...+.+. .......++.       .. .+|++|
T Consensus       124 ~~~~~vlilGAG-GAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~-------~~~~~dliI  195 (283)
T COG0169         124 VTGKRVLILGAG-GAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLE-------GLEEADLLI  195 (283)
T ss_pred             cCCCEEEEECCc-HHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccc-------cccccCEEE
Confidence            358999999999 8899999999999975 45555555432111222222222 1111111111       12 589999


Q ss_pred             ecCCCchHH------HHHHhcccCcEEEEEe
Q psy2961          86 NCVGGNSAT------NLLRTLVSKGVMVTYG  110 (202)
Q Consensus        86 d~~g~~~~~------~~~~~l~~~G~~v~~g  110 (202)
                      +|++-....      -...++++.-.+..+.
T Consensus       196 NaTp~Gm~~~~~~~~~~~~~l~~~~~v~D~v  226 (283)
T COG0169         196 NATPVGMAGPEGDSPVPAELLPKGAIVYDVV  226 (283)
T ss_pred             ECCCCCCCCCCCCCCCcHHhcCcCCEEEEec
Confidence            998632211      0145666666666664

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=96.81  E-value=0.013  Score=45.35  Aligned_cols=35  Identities=26%  Similarity=0.307  Sum_probs=31.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCc
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR   45 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~   45 (202)
                      .|.+|.|+|.| .+|...++.++.+|++|++..++.
T Consensus       135 ~g~tvgIvG~G-~IG~~vA~~l~afG~~V~~~~~~~  169 (312)
T PRK15469        135 EDFTIGILGAG-VLGSKVAQSLQTWGFPLRCWSRSR  169 (312)
T ss_pred             CCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEeCCC
Confidence            67899999999 999999999999999998876544

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=96.79  E-value=0.0034  Score=45.98  Aligned_cols=70  Identities=16%  Similarity=0.354  Sum_probs=47.8

Q ss_pred             EEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHH-hcCCceEe-C---hhHHHh-HHHhhCCCCCeEEEec
Q psy2961          14 VIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK-SLGADYVF-T---EEELRN-ISRDASIPKPKLALNC   87 (202)
Q Consensus        14 VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~-~lg~~~v~-~---~~~~~~-~~~~~~~~~~d~vid~   87 (202)
                      |||+||+|-+|..++..+...|..|+.+.++...    ..... ......+. |   .+.+.+ +..    .++|.||.+
T Consensus         1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~----~~~~~~~~~~~~~~~dl~~~~~~~~~~~~----~~~d~vi~~   72 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNS----ESFEEKKLNVEFVIGDLTDKEQLEKLLEK----ANIDVVIHL   72 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTG----GHHHHHHTTEEEEESETTSHHHHHHHHHH----HTESEEEEE
T ss_pred             EEEEccCCHHHHHHHHHHHHcCCccccccccccc----cccccccceEEEEEeeccccccccccccc----cCceEEEEe
Confidence            7999999999999999999999999988887764    22221 12322222 2   233333 333    378999999


Q ss_pred             CCCc
Q psy2961          88 VGGN   91 (202)
Q Consensus        88 ~g~~   91 (202)
                      ++..
T Consensus        73 a~~~   76 (236)
T PF01370_consen   73 AAFS   76 (236)
T ss_dssp             BSSS
T ss_pred             eccc
Confidence            8863

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=96.75  E-value=0.0078  Score=46.34  Aligned_cols=78  Identities=9%  Similarity=0.060  Sum_probs=44.6

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhc-CCceEe-ChhHHHhHHHhhCCCCCeEEEecCCC
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL-GADYVF-TEEELRNISRDASIPKPKLALNCVGG   90 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~l-g~~~v~-~~~~~~~~~~~~~~~~~d~vid~~g~   90 (202)
                      +|||+|++|.+|..+++.+...|.+|+.+.+......++.....+. +...+. |..+...+.+.....++|+||+++|.
T Consensus         1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vv~~ag~   80 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLLESGHEVVVLDNLSNGSPEALKRGERITRVTFVEGDLRDRELLDRLFEEHKIDAVIHFAGL   80 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHHhCCCeEEEEeCCCccchhhhhhhccccceEEEECCCCCHHHHHHHHHhCCCcEEEECccc
Confidence            4899999999999999999889999887654322111111111111 111211 22222212222222579999999874

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=96.75  E-value=0.0094  Score=46.58  Aligned_cols=35  Identities=11%  Similarity=0.270  Sum_probs=31.1

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      ++|||+||+|.+|..+++.+...|.+|+++.++.+
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~   35 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRSS   35 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCc
Confidence            47999999999999999999999999998887653

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=96.75  E-value=0.012  Score=44.79  Aligned_cols=76  Identities=14%  Similarity=0.088  Sum_probs=43.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEe-cCcccHHHHHHHHHhcCCce-EeChhHHHhHHHhhCCCCCeEEEec
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIV-RNRDDIDKLKSYLKSLGADY-VFTEEELRNISRDASIPKPKLALNC   87 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~-~~~~~~~~~~~~~~~lg~~~-v~~~~~~~~~~~~~~~~~~d~vid~   87 (202)
                      .+.+|+|+|+| +.|.+++.-+...|++.+.++ ++.++   ..+.++.++... +.......++....  ..+|+||+|
T Consensus       124 ~~k~vlvlGaG-Gaarai~~aL~~~G~~~i~I~nRt~~k---a~~La~~~~~~~~~~~~~~~~~~~~~~--~~~DiVIna  197 (282)
T TIGR01809       124 AGFRGLVIGAG-GTSRAAVYALASLGVTDITVINRNPDK---LSRLVDLGVQVGVITRLEGDSGGLAIE--KAAEVLVST  197 (282)
T ss_pred             CCceEEEEcCc-HHHHHHHHHHHHcCCCeEEEEeCCHHH---HHHHHHHhhhcCcceeccchhhhhhcc--cCCCEEEEC
Confidence            57899999998 889999988889998655444 44432   223333343211 11101001111111  468999999


Q ss_pred             CCCc
Q psy2961          88 VGGN   91 (202)
Q Consensus        88 ~g~~   91 (202)
                      ++..
T Consensus       198 Tp~g  201 (282)
T TIGR01809       198 VPAD  201 (282)
T ss_pred             CCCC
Confidence            8654

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=96.74  E-value=0.012  Score=45.34  Aligned_cols=37  Identities=22%  Similarity=0.327  Sum_probs=32.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      .+.+|||+|++|.+|..++..+...|.+|++++++.+
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~   39 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPN   39 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCC
Confidence            3578999999999999999999999999988887655

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=96.74  E-value=0.0046  Score=47.76  Aligned_cols=71  Identities=17%  Similarity=0.256  Sum_probs=47.7

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCCCeEEEecCC
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNCVG   89 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~vid~~g   89 (202)
                      +|+|.|++|.+|..+++.+...|.+|+++.++++.    ...+...+...+. |..+...+.+..  .++|+||++++
T Consensus         2 ~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~----~~~~~~~~~~~~~~D~~~~~~l~~~~--~~~d~vi~~a~   73 (328)
T TIGR03466         2 KVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSD----RRNLEGLDVEIVEGDLRDPASLRKAV--AGCRALFHVAA   73 (328)
T ss_pred             eEEEECCccchhHHHHHHHHHCCCEEEEEEecCcc----ccccccCCceEEEeeCCCHHHHHHHH--hCCCEEEEece
Confidence            68999999999999999999999999999887652    2223333444333 222222233333  36799999875

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PRK07574 formate dehydrogenase; Provisional

Probab=96.74  E-value=0.024  Score=45.09  Aligned_cols=35  Identities=26%  Similarity=0.258  Sum_probs=31.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCc
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR   45 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~   45 (202)
                      .|.+|.|.|.| .+|..+++.++.+|.+|++..++.
T Consensus       191 ~gktVGIvG~G-~IG~~vA~~l~~fG~~V~~~dr~~  225 (385)
T PRK07574        191 EGMTVGIVGAG-RIGLAVLRRLKPFDVKLHYTDRHR  225 (385)
T ss_pred             CCCEEEEECCC-HHHHHHHHHHHhCCCEEEEECCCC
Confidence            67899999999 899999999999999998887654

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=96.74  E-value=0.018  Score=41.03  Aligned_cols=98  Identities=18%  Similarity=0.152  Sum_probs=58.3

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHC-CCcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCCCeEEE
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLAL   85 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~-g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~vi   85 (202)
                      ++++.+||-.|+|+  |..++.+++.. +++|+++..+++......+.++..+.+.+- -..+..++   .....+|+|+
T Consensus        43 l~~g~~VLDiGcGt--G~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~---~~~~~fDlV~  117 (187)
T PRK00107         43 LPGGERVLDVGSGA--GFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEF---GQEEKFDVVT  117 (187)
T ss_pred             cCCCCeEEEEcCCC--CHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhC---CCCCCccEEE
Confidence            45689999999874  66666666644 567777776665332233444455554321 11222221   1135799998


Q ss_pred             ecCCCc--hH-HHHHHhcccCcEEEEEe
Q psy2961          86 NCVGGN--SA-TNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        86 d~~g~~--~~-~~~~~~l~~~G~~v~~g  110 (202)
                      -.....  .+ ..+.++|+|+|+++.+-
T Consensus       118 ~~~~~~~~~~l~~~~~~LkpGG~lv~~~  145 (187)
T PRK00107        118 SRAVASLSDLVELCLPLLKPGGRFLALK  145 (187)
T ss_pred             EccccCHHHHHHHHHHhcCCCeEEEEEe
Confidence            643322  22 23678999999999874

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=96.72  E-value=0.016  Score=44.00  Aligned_cols=92  Identities=8%  Similarity=0.039  Sum_probs=56.0

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhh----CCCC-CeEEEe
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDA----SIPK-PKLALN   86 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~----~~~~-~d~vid   86 (202)
                      +|+|+|++|.+|..+++.+...|.+|.+++++++.    ..   ..+...+. |..|...+.+..    .-.+ +|.++-
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~----~~---~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~   73 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSS----SA---GPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYL   73 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCcc----cc---CCCCccccccCCCHHHHHHHHhcccCcCCceeEEEE
Confidence            48999999999999999988899999999988763    11   12333222 333322222222    1135 898887


Q ss_pred             cCCCc-----hHHHHHHhcccCc--EEEEEec
Q psy2961          87 CVGGN-----SATNLLRTLVSKG--VMVTYGG  111 (202)
Q Consensus        87 ~~g~~-----~~~~~~~~l~~~G--~~v~~g~  111 (202)
                      +.+..     ....+++.++..|  ++|.++.
T Consensus        74 ~~~~~~~~~~~~~~~i~aa~~~gv~~~V~~Ss  105 (285)
T TIGR03649        74 VAPPIPDLAPPMIKFIDFARSKGVRRFVLLSA  105 (285)
T ss_pred             eCCCCCChhHHHHHHHHHHHHcCCCEEEEeec
Confidence            76532     1223445444443  6777764

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=96.72  E-value=0.0078  Score=43.52  Aligned_cols=101  Identities=16%  Similarity=0.163  Sum_probs=60.2

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHC--CCcEEEEecCcccHHHHHHHHHhcCCceEeC--hhHHHh-HHHhhC---C
Q psy2961           7 SLSPGDVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGADYVFT--EEELRN-ISRDAS---I   78 (202)
Q Consensus         7 ~~~~g~~VlI~g~~~~vG~~~i~la~~~--g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~--~~~~~~-~~~~~~---~   78 (202)
                      +.....+||-.|.+  +|+.++.+|+.+  +.+++++-.+++..+...+.++..|...-+.  ..+..+ +.+...   .
T Consensus        42 ~~~~~k~vLEIGt~--~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~  119 (205)
T PF01596_consen   42 RLTRPKRVLEIGTF--TGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEE  119 (205)
T ss_dssp             HHHT-SEEEEESTT--TSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTT
T ss_pred             HhcCCceEEEeccc--cccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCC
Confidence            33456789999886  789999999876  4677777766654333344555556532221  122223 333221   2


Q ss_pred             CCCeEEE-ecCCCch---HHHHHHhcccCcEEEEE
Q psy2961          79 PKPKLAL-NCVGGNS---ATNLLRTLVSKGVMVTY  109 (202)
Q Consensus        79 ~~~d~vi-d~~g~~~---~~~~~~~l~~~G~~v~~  109 (202)
                      +.||+|| |+.-..+   +..++++|++||.++.=
T Consensus       120 ~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~D  154 (205)
T PF01596_consen  120 GQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIAD  154 (205)
T ss_dssp             TSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CceeEEEEcccccchhhHHHHHhhhccCCeEEEEc
Confidence            4699975 5543332   23367899999998874

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=96.71  E-value=0.032  Score=41.03  Aligned_cols=94  Identities=12%  Similarity=0.200  Sum_probs=57.3

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCc--EEEEecCc----ccH----HH-HHHHHHhcCCceEeChhHHHhHHHhhC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLK--TINIVRNR----DDI----DK-LKSYLKSLGADYVFTEEELRNISRDAS   77 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~--vi~~~~~~----~~~----~~-~~~~~~~lg~~~v~~~~~~~~~~~~~~   77 (202)
                      -.+.+|+|+|+| +.|..++..+...|++  .+.++++.    ...    .+ +.+.++.++... .+ .++.+   .. 
T Consensus        23 l~~~rvlvlGAG-gAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~-~~-~~l~~---~l-   95 (226)
T cd05311          23 IEEVKIVINGAG-AAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK-TG-GTLKE---AL-   95 (226)
T ss_pred             ccCCEEEEECch-HHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc-cc-CCHHH---HH-
Confidence            356899999998 8999999888888987  66666555    211    11 133344443221 11 12322   12 


Q ss_pred             CCCCeEEEecCCCchH-HHHHHhcccCcEEEEEe
Q psy2961          78 IPKPKLALNCVGGNSA-TNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        78 ~~~~d~vid~~g~~~~-~~~~~~l~~~G~~v~~g  110 (202)
                       .++|++|.+++...+ ...++.|.++..+..+.
T Consensus        96 -~~~dvlIgaT~~G~~~~~~l~~m~~~~ivf~ls  128 (226)
T cd05311          96 -KGADVFIGVSRPGVVKKEMIKKMAKDPIVFALA  128 (226)
T ss_pred             -hcCCEEEeCCCCCCCCHHHHHhhCCCCEEEEeC
Confidence             347999999973333 24677777776666554

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=96.70  E-value=0.014  Score=40.03  Aligned_cols=95  Identities=17%  Similarity=0.131  Sum_probs=56.3

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCC-CcEEEEecCcccHHHHHHHHHhcCCceE-eChhHHHhHHHhhCCCCCeEEEe
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWG-LKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRNISRDASIPKPKLALN   86 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g-~~vi~~~~~~~~~~~~~~~~~~lg~~~v-~~~~~~~~~~~~~~~~~~d~vid   86 (202)
                      ..+.+|+|.|+| .+|...++.+...| .++++..++.+.   ..+..++++...+ ....+..+   .  -.++|+|+.
T Consensus        17 ~~~~~i~iiG~G-~~g~~~a~~l~~~g~~~v~v~~r~~~~---~~~~~~~~~~~~~~~~~~~~~~---~--~~~~Dvvi~   87 (155)
T cd01065          17 LKGKKVLILGAG-GAARAVAYALAELGAAKIVIVNRTLEK---AKALAERFGELGIAIAYLDLEE---L--LAEADLIIN   87 (155)
T ss_pred             CCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEcCCHHH---HHHHHHHHhhcccceeecchhh---c--cccCCEEEe
Confidence            456889999996 89999998888886 455555544432   2233444543210 11122211   1  157899999


Q ss_pred             cCCCchH---H--HHHHhcccCcEEEEEecc
Q psy2961          87 CVGGNSA---T--NLLRTLVSKGVMVTYGGM  112 (202)
Q Consensus        87 ~~g~~~~---~--~~~~~l~~~G~~v~~g~~  112 (202)
                      |++....   .  .....++++..++.++..
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~~  118 (155)
T cd01065          88 TTPVGMKPGDELPLPPSLLKPGGVVYDVVYN  118 (155)
T ss_pred             CcCCCCCCCCCCCCCHHHcCCCCEEEEcCcC
Confidence            9976653   1  123456777777777543

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PLN02244 tocopherol O-methyltransferase

Probab=96.70  E-value=0.0096  Score=46.61  Aligned_cols=100  Identities=14%  Similarity=0.124  Sum_probs=61.1

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCce-Ee-ChhHHHhHHHhhCCCCCeEEEe
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-VF-TEEELRNISRDASIPKPKLALN   86 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-v~-~~~~~~~~~~~~~~~~~d~vid   86 (202)
                      +++++||=.|+|  .|..+..+++..|++|+++.-++.......+.+++.+... +. -..|..++  ......||+|+-
T Consensus       117 ~~~~~VLDiGCG--~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~--~~~~~~FD~V~s  192 (340)
T PLN02244        117 KRPKRIVDVGCG--IGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ--PFEDGQFDLVWS  192 (340)
T ss_pred             CCCCeEEEecCC--CCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC--CCCCCCccEEEE
Confidence            688999988886  5778888998889999999877764322223333333321 11 01111110  112357999986


Q ss_pred             cCCCc-------hHHHHHHhcccCcEEEEEecc
Q psy2961          87 CVGGN-------SATNLLRTLVSKGVMVTYGGM  112 (202)
Q Consensus        87 ~~g~~-------~~~~~~~~l~~~G~~v~~g~~  112 (202)
                      .....       .+.++.+.|+|||+++.+...
T Consensus       193 ~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~  225 (340)
T PLN02244        193 MESGEHMPDKRKFVQELARVAAPGGRIIIVTWC  225 (340)
T ss_pred             CCchhccCCHHHHHHHHHHHcCCCcEEEEEEec
Confidence            44322       223467899999999987543

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=96.70  E-value=0.018  Score=43.86  Aligned_cols=92  Identities=14%  Similarity=0.072  Sum_probs=52.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHH-HhcC----CceEeChhHHHhHHHhhCCCCCeEE
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLG----ADYVFTEEELRNISRDASIPKPKLA   84 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg----~~~v~~~~~~~~~~~~~~~~~~d~v   84 (202)
                      .+.+|+|.|+| ++|.+++..+...|++.+.++++...   +.+.+ +.++    ...+...++..+   ..  .++|+|
T Consensus       126 ~~k~vlIlGaG-Gaaraia~aL~~~G~~~I~I~nR~~~---ka~~la~~l~~~~~~~~~~~~~~~~~---~~--~~aDiV  196 (284)
T PRK12549        126 SLERVVQLGAG-GAGAAVAHALLTLGVERLTIFDVDPA---RAAALADELNARFPAARATAGSDLAA---AL--AAADGL  196 (284)
T ss_pred             cCCEEEEECCc-HHHHHHHHHHHHcCCCEEEEECCCHH---HHHHHHHHHHhhCCCeEEEeccchHh---hh--CCCCEE
Confidence            46799999999 89999999999999965555554432   22222 3332    112222222211   11  468999


Q ss_pred             EecCCCc-----hHHHHHHhcccCcEEEEEe
Q psy2961          85 LNCVGGN-----SATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        85 id~~g~~-----~~~~~~~~l~~~G~~v~~g  110 (202)
                      |+|+...     ...-....+++...++.+.
T Consensus       197 InaTp~Gm~~~~~~~~~~~~l~~~~~v~Div  227 (284)
T PRK12549        197 VHATPTGMAKHPGLPLPAELLRPGLWVADIV  227 (284)
T ss_pred             EECCcCCCCCCCCCCCCHHHcCCCcEEEEee
Confidence            9996421     1100134566666665554

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=96.69  E-value=0.0036  Score=48.87  Aligned_cols=37  Identities=19%  Similarity=0.325  Sum_probs=32.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      ++.+|||+|++|.+|..+++.+...|.+|+++.++.+
T Consensus         5 ~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~~   41 (340)
T PLN02653          5 PRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRSS   41 (340)
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHCCCEEEEEecccc
Confidence            4678999999999999999999999999998877543

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=96.68  E-value=0.018  Score=42.63  Aligned_cols=102  Identities=12%  Similarity=0.147  Sum_probs=58.8

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCC--CcEEEEecCcccHHHHHHHHHhcCCceEeC--hhHHHh-HHHhhC--
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWG--LKTINIVRNRDDIDKLKSYLKSLGADYVFT--EEELRN-ISRDAS--   77 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g--~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~--~~~~~~-~~~~~~--   77 (202)
                      ..+..+.++||-.|.+  .|..++.+++..+  .+++++-.+++......+.++..|...-+.  ..+..+ +.+...  
T Consensus        63 l~~~~~~~~vLEiGt~--~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~  140 (234)
T PLN02781         63 LVKIMNAKNTLEIGVF--TGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNND  140 (234)
T ss_pred             HHHHhCCCEEEEecCc--ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCC
Confidence            3455678899998886  5666677777653  467776666553322334445556432121  123333 333321  


Q ss_pred             -CCCCeEEEecCCCc----hHHHHHHhcccCcEEEE
Q psy2961          78 -IPKPKLALNCVGGN----SATNLLRTLVSKGVMVT  108 (202)
Q Consensus        78 -~~~~d~vid~~g~~----~~~~~~~~l~~~G~~v~  108 (202)
                       ...||+||--...+    .+..+++++++||.++.
T Consensus       141 ~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~  176 (234)
T PLN02781        141 PKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAF  176 (234)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence             25799987543322    22336889999998775

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=96.67  E-value=0.0073  Score=40.00  Aligned_cols=96  Identities=15%  Similarity=0.139  Sum_probs=53.3

Q ss_pred             EEEEeCCCcHHHHHHHHHHHH-CCCcEEEEecCcccHHHHHHHHHhcCC--ceEeChhHHHhHHHhhCCCCCeEEEecCC
Q psy2961          13 VVIQNGANSACGQNVIQIARH-WGLKTINIVRNRDDIDKLKSYLKSLGA--DYVFTEEELRNISRDASIPKPKLALNCVG   89 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~-~g~~vi~~~~~~~~~~~~~~~~~~lg~--~~v~~~~~~~~~~~~~~~~~~d~vid~~g   89 (202)
                      +|.|+|++|-+|..+++.+.. .+.++.+++.+........+.-.-.|.  ..+..+.++.+   ..  ..+|++||++.
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~---~~--~~~DVvIDfT~   76 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEE---LL--EEADVVIDFTN   76 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHH---HT--TH-SEEEEES-
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHH---hc--ccCCEEEEcCC
Confidence            689999977999999999987 678877777665410000011111111  11111233333   22  22799999996


Q ss_pred             CchHHHHHHhcccCcEEEEEeccC
Q psy2961          90 GNSATNLLRTLVSKGVMVTYGGMS  113 (202)
Q Consensus        90 ~~~~~~~~~~l~~~G~~v~~g~~~  113 (202)
                      .+.....++.+...|.-+.+|...
T Consensus        77 p~~~~~~~~~~~~~g~~~ViGTTG  100 (124)
T PF01113_consen   77 PDAVYDNLEYALKHGVPLVIGTTG  100 (124)
T ss_dssp             HHHHHHHHHHHHHHT-EEEEE-SS
T ss_pred             hHHhHHHHHHHHhCCCCEEEECCC
Confidence            555556666555557777777443

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PLN02928 oxidoreductase family protein

Probab=96.67  E-value=0.018  Score=45.13  Aligned_cols=35  Identities=26%  Similarity=0.328  Sum_probs=31.2

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRN   44 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~   44 (202)
                      -.|.+|.|+|.| .+|..+++.++.+|++|++..++
T Consensus       157 l~gktvGIiG~G-~IG~~vA~~l~afG~~V~~~dr~  191 (347)
T PLN02928        157 LFGKTVFILGYG-AIGIELAKRLRPFGVKLLATRRS  191 (347)
T ss_pred             CCCCEEEEECCC-HHHHHHHHHHhhCCCEEEEECCC
Confidence            358899999999 99999999999999999887655

>PLN02476 O-methyltransferase

Probab=96.66  E-value=0.027  Score=42.62  Aligned_cols=102  Identities=14%  Similarity=0.107  Sum_probs=61.6

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCC--CcEEEEecCcccHHHHHHHHHhcCCceEeC--hhHHHh-HHHhh---
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWG--LKTINIVRNRDDIDKLKSYLKSLGADYVFT--EEELRN-ISRDA---   76 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g--~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~--~~~~~~-~~~~~---   76 (202)
                      ..+..+.++||-.|.+  +|..++.+|+.++  .+++++-.+++..+...+.+++.|...-+.  ..+..+ +.+..   
T Consensus       113 L~~~~~ak~VLEIGT~--tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~  190 (278)
T PLN02476        113 LVQILGAERCIEVGVY--TGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNG  190 (278)
T ss_pred             HHHhcCCCeEEEecCC--CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcc
Confidence            3456678899999886  6888888888763  456666666553333445556667653221  233333 43321   


Q ss_pred             CCCCCeEEEecCCCch----HHHHHHhcccCcEEEE
Q psy2961          77 SIPKPKLALNCVGGNS----ATNLLRTLVSKGVMVT  108 (202)
Q Consensus        77 ~~~~~d~vid~~g~~~----~~~~~~~l~~~G~~v~  108 (202)
                      ....||.||--.....    +..+++.|++||.++.
T Consensus       191 ~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~  226 (278)
T PLN02476        191 EGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVM  226 (278)
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence            1246999754443322    2336889999999876

>PLN03139 formate dehydrogenase; Provisional

Probab=96.66  E-value=0.023  Score=45.17  Aligned_cols=35  Identities=20%  Similarity=0.186  Sum_probs=30.7

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRN   44 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~   44 (202)
                      -.|.+|.|.|.| .+|...++.++.+|+++++..++
T Consensus       197 L~gktVGIVG~G-~IG~~vA~~L~afG~~V~~~d~~  231 (386)
T PLN03139        197 LEGKTVGTVGAG-RIGRLLLQRLKPFNCNLLYHDRL  231 (386)
T ss_pred             CCCCEEEEEeec-HHHHHHHHHHHHCCCEEEEECCC
Confidence            368899999998 89999999999999998876554

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=96.66  E-value=0.01  Score=44.17  Aligned_cols=103  Identities=16%  Similarity=0.213  Sum_probs=60.5

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCC--cEEEEecCcccHHHHHHHHHhcCCceEe--ChhHHH-h-HHHhhCC
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWGL--KTINIVRNRDDIDKLKSYLKSLGADYVF--TEEELR-N-ISRDASI   78 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~--~vi~~~~~~~~~~~~~~~~~~lg~~~v~--~~~~~~-~-~~~~~~~   78 (202)
                      ..++.||++|+=.|.||  |.++..+++..|.  +|+..-.+++..+...+.++.+|....+  ...|.. + ..+.. .
T Consensus        35 ~l~i~pG~~VlEaGtGS--G~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~-~  111 (247)
T PF08704_consen   35 RLDIRPGSRVLEAGTGS--GSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEEL-E  111 (247)
T ss_dssp             HTT--TT-EEEEE--TT--SHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT--T
T ss_pred             HcCCCCCCEEEEecCCc--HHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccc-c
Confidence            46789999999988764  8888888887763  6777776665433334444566664222  123332 1 21111 2


Q ss_pred             CCCeEEEecCCCc--hHHHHHHhc-ccCcEEEEEe
Q psy2961          79 PKPKLALNCVGGN--SATNLLRTL-VSKGVMVTYG  110 (202)
Q Consensus        79 ~~~d~vid~~g~~--~~~~~~~~l-~~~G~~v~~g  110 (202)
                      ..+|.||=-...|  ....+.+.| ++||+++.+.
T Consensus       112 ~~~DavfLDlp~Pw~~i~~~~~~L~~~gG~i~~fs  146 (247)
T PF08704_consen  112 SDFDAVFLDLPDPWEAIPHAKRALKKPGGRICCFS  146 (247)
T ss_dssp             TSEEEEEEESSSGGGGHHHHHHHE-EEEEEEEEEE
T ss_pred             CcccEEEEeCCCHHHHHHHHHHHHhcCCceEEEEC
Confidence            4688876544444  344588999 8999999986

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PLN02686 cinnamoyl-CoA reductase

Probab=96.66  E-value=0.0092  Score=47.21  Aligned_cols=38  Identities=16%  Similarity=0.191  Sum_probs=33.4

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      ..+++|||+|++|.+|..+++.+...|++|++++++.+
T Consensus        51 ~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~   88 (367)
T PLN02686         51 AEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQE   88 (367)
T ss_pred             CCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            45789999999999999999999999999988777654

>KOG1203|consensus

Probab=96.64  E-value=0.03  Score=44.55  Aligned_cols=108  Identities=19%  Similarity=0.318  Sum_probs=65.9

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHH----hcCCceEeC----hhHHHh-HHHhhCCC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK----SLGADYVFT----EEELRN-ISRDASIP   79 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~----~lg~~~v~~----~~~~~~-~~~~~~~~   79 (202)
                      ..-..|+|.||+|.+|+.+++.++..|..|.+.++..++   ..+.++    .++...+..    ..|... +.+.. ..
T Consensus        77 ~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~---a~~~~~~~~~d~~~~~v~~~~~~~~d~~~~~~~~~-~~  152 (411)
T KOG1203|consen   77 KKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQK---AEDLLGVFFVDLGLQNVEADVVTAIDILKKLVEAV-PK  152 (411)
T ss_pred             CCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhh---hhhhhcccccccccceeeeccccccchhhhhhhhc-cc
Confidence            345689999999999999999999999999999988764   344444    333333322    122222 22221 12


Q ss_pred             CCeEEEecCCCch---------------HHHHHHhcccCc--EEEEEeccCCCCcCCC
Q psy2961          80 KPKLALNCVGGNS---------------ATNLLRTLVSKG--VMVTYGGMSREPVQIP  120 (202)
Q Consensus        80 ~~d~vid~~g~~~---------------~~~~~~~l~~~G--~~v~~g~~~~~~~~~~  120 (202)
                      +..+++.|.|+..               ...+++++...|  +++++|.........+
T Consensus       153 ~~~~v~~~~ggrp~~ed~~~p~~VD~~g~knlvdA~~~aGvk~~vlv~si~~~~~~~~  210 (411)
T KOG1203|consen  153 GVVIVIKGAGGRPEEEDIVTPEKVDYEGTKNLVDACKKAGVKRVVLVGSIGGTKFNQP  210 (411)
T ss_pred             cceeEEecccCCCCcccCCCcceecHHHHHHHHHHHHHhCCceEEEEEeecCcccCCC
Confidence            4556666665321               122445544444  8888887766544333

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.64  E-value=0.0084  Score=38.29  Aligned_cols=87  Identities=14%  Similarity=0.227  Sum_probs=56.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVG   89 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~g   89 (202)
                      .|.+|||.|+| .+|..-++.+...|+++++++...+       ..+  +.-... ...+.+   .  -.++|+||-+++
T Consensus         6 ~~~~vlVvGgG-~va~~k~~~Ll~~gA~v~vis~~~~-------~~~--~~i~~~-~~~~~~---~--l~~~~lV~~at~   69 (103)
T PF13241_consen    6 KGKRVLVVGGG-PVAARKARLLLEAGAKVTVISPEIE-------FSE--GLIQLI-RREFEE---D--LDGADLVFAATD   69 (103)
T ss_dssp             TT-EEEEEEES-HHHHHHHHHHCCCTBEEEEEESSEH-------HHH--TSCEEE-ESS-GG---G--CTTESEEEE-SS
T ss_pred             CCCEEEEECCC-HHHHHHHHHHHhCCCEEEEECCchh-------hhh--hHHHHH-hhhHHH---H--HhhheEEEecCC
Confidence            57899999998 9999999999999999888875531       111  111111 112211   1  157899999999


Q ss_pred             CchHHH-HHHhcccCcEEEEEecc
Q psy2961          90 GNSATN-LLRTLVSKGVMVTYGGM  112 (202)
Q Consensus        90 ~~~~~~-~~~~l~~~G~~v~~g~~  112 (202)
                      .+.... +....+..|.++.+...
T Consensus        70 d~~~n~~i~~~a~~~~i~vn~~D~   93 (103)
T PF13241_consen   70 DPELNEAIYADARARGILVNVVDD   93 (103)
T ss_dssp             -HHHHHHHHHHHHHTTSEEEETT-
T ss_pred             CHHHHHHHHHHHhhCCEEEEECCC
Confidence            888776 55666778888887643

>PLN02427 UDP-apiose/xylose synthase

Probab=96.62  E-value=0.016  Score=46.06  Aligned_cols=75  Identities=11%  Similarity=-0.013  Sum_probs=46.9

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHC-CCcEEEEecCcccHHHHHHHHHhcC-------CceEe-ChhHHHhHHHhhCCC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLG-------ADYVF-TEEELRNISRDASIP   79 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~-g~~vi~~~~~~~~~~~~~~~~~~lg-------~~~v~-~~~~~~~~~~~~~~~   79 (202)
                      -+..+|||+|++|.+|..+++.+... |.+|+++.++.+    +...+...+       .+.+. |-.+...+.+..  .
T Consensus        12 ~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~----~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~--~   85 (386)
T PLN02427         12 IKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYND----KIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLI--K   85 (386)
T ss_pred             ccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCch----hhhhhhccccccCCCCeEEEEcCCCChHHHHHHh--h
Confidence            34468999999999999999888877 588888876554    233333222       12221 212222233333  3


Q ss_pred             CCeEEEecCC
Q psy2961          80 KPKLALNCVG   89 (202)
Q Consensus        80 ~~d~vid~~g   89 (202)
                      ++|+||.+++
T Consensus        86 ~~d~ViHlAa   95 (386)
T PLN02427         86 MADLTINLAA   95 (386)
T ss_pred             cCCEEEEccc
Confidence            5899999886

>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase

Probab=96.62  E-value=0.067  Score=43.12  Aligned_cols=96  Identities=14%  Similarity=0.219  Sum_probs=62.8

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHC--CCcEEEEecCcccHHHHHHHHHhcCCceEeC--hh---HHH--------------
Q psy2961          12 DVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGADYVFT--EE---ELR--------------   70 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~--g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~--~~---~~~--------------   70 (202)
                      .+|.|+|++|++|..++.+.+..  .++|++.+...+ .+...++++++.+..+.-  ..   .+.              
T Consensus        58 KkI~ILGSTGSIGtqtLdVI~~~pd~f~vvaLaag~N-i~lL~~q~~~f~p~~v~v~d~~~~~~l~~~l~~~~~~~~vl~  136 (454)
T PLN02696         58 KPISLLGSTGSIGTQTLDIVAENPDKFKVVALAAGSN-VTLLADQVRKFKPKLVAVRNESLVDELKEALADLDDKPEIIP  136 (454)
T ss_pred             cEEEEecCCcHhhHHHHHHHHhCccccEEEEEECCCC-HHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhcCCCCCcEEEE
Confidence            48999999999999999998865  466777766553 344567777888876662  21   111              


Q ss_pred             --h-HHHhhCCCCCeEEEecCCCchHH-HHHHhcccCcEEEE
Q psy2961          71 --N-ISRDASIPKPKLALNCVGGNSAT-NLLRTLVSKGVMVT  108 (202)
Q Consensus        71 --~-~~~~~~~~~~d~vid~~g~~~~~-~~~~~l~~~G~~v~  108 (202)
                        + +.+......+|+|+.+.+|-... ..+..++.|=++.+
T Consensus       137 G~egl~~la~~~evDiVV~AIvG~aGL~pTl~AIkaGK~VAL  178 (454)
T PLN02696        137 GEEGIVEVARHPEAVTVVTGIVGCAGLKPTVAAIEAGKDIAL  178 (454)
T ss_pred             CHHHHHHHHcCCCCCEEEEeCccccchHHHHHHHHCCCcEEE
Confidence              1 22333335689999988775433 35666666655443

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.60  E-value=0.016  Score=43.95  Aligned_cols=77  Identities=10%  Similarity=0.154  Sum_probs=58.2

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCV   88 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~   88 (202)
                      -.|.+|+|.|.+..+|.-++.++...|+.|+.+.+...                     ++.+   .+  ...|+|+-++
T Consensus       156 l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~---------------------~l~~---~~--~~ADIVV~av  209 (285)
T PRK14189        156 LRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTR---------------------DLAA---HT--RQADIVVAAV  209 (285)
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCC---------------------CHHH---Hh--hhCCEEEEcC
Confidence            37899999999988899999999999998876532211                     1111   11  4679999999


Q ss_pred             CCchHHHHHHhcccCcEEEEEecc
Q psy2961          89 GGNSATNLLRTLVSKGVMVTYGGM  112 (202)
Q Consensus        89 g~~~~~~~~~~l~~~G~~v~~g~~  112 (202)
                      |.+.+.. -++++++..++.+|..
T Consensus       210 G~~~~i~-~~~ik~gavVIDVGin  232 (285)
T PRK14189        210 GKRNVLT-ADMVKPGATVIDVGMN  232 (285)
T ss_pred             CCcCccC-HHHcCCCCEEEEcccc
Confidence            9887644 3889999999999843

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=96.60  E-value=0.013  Score=46.59  Aligned_cols=89  Identities=16%  Similarity=0.189  Sum_probs=50.6

Q ss_pred             EEEeCCCcHHHHHHHHHHHHCCC--cEEEEecCcccHHHHHHHHH-h-cCC--ceE-eChhHHHhHHHhhCCCCCeEEEe
Q psy2961          14 VIQNGANSACGQNVIQIARHWGL--KTINIVRNRDDIDKLKSYLK-S-LGA--DYV-FTEEELRNISRDASIPKPKLALN   86 (202)
Q Consensus        14 VlI~g~~~~vG~~~i~la~~~g~--~vi~~~~~~~~~~~~~~~~~-~-lg~--~~v-~~~~~~~~~~~~~~~~~~d~vid   86 (202)
                      |+|+|+ |.+|..+++.+...+-  ++++..++.+    +.+.+. + .+.  ..+ +|-.+..++.+..  .+.|+||+
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~----~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~--~~~dvVin   73 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPE----KAERLAEKLLGDRVEAVQVDVNDPESLAELL--RGCDVVIN   73 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHH----HHHHHHT--TTTTEEEEE--TTTHHHHHHHH--TTSSEEEE
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHH----HHHHHHhhccccceeEEEEecCCHHHHHHHH--hcCCEEEE
Confidence            789999 6999999998887764  5555555544    333442 2 222  211 1322322244444  45699999


Q ss_pred             cCCCchHHH-HHHhcccCcEEEEE
Q psy2961          87 CVGGNSATN-LLRTLVSKGVMVTY  109 (202)
Q Consensus        87 ~~g~~~~~~-~~~~l~~~G~~v~~  109 (202)
                      |+|...... +..|+..+-+++..
T Consensus        74 ~~gp~~~~~v~~~~i~~g~~yvD~   97 (386)
T PF03435_consen   74 CAGPFFGEPVARACIEAGVHYVDT   97 (386)
T ss_dssp             -SSGGGHHHHHHHHHHHT-EEEES
T ss_pred             CCccchhHHHHHHHHHhCCCeecc
Confidence            999775444 44577778888883

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=96.60  E-value=0.0064  Score=40.04  Aligned_cols=95  Identities=13%  Similarity=0.138  Sum_probs=55.7

Q ss_pred             EEEEeCCCcHHHHHHHHHHHH-CCCcEEEEecCcccHHHHHHHHHh-c-CC-ceEeChhHHHhHHHhhCCCCCeEEEecC
Q psy2961          13 VVIQNGANSACGQNVIQIARH-WGLKTINIVRNRDDIDKLKSYLKS-L-GA-DYVFTEEELRNISRDASIPKPKLALNCV   88 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~-~g~~vi~~~~~~~~~~~~~~~~~~-l-g~-~~v~~~~~~~~~~~~~~~~~~d~vid~~   88 (202)
                      +|.|.|++|-+|..+++++.. -.++++.++++............. + +. +..+...+   ....   .++|+||.|+
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~Dvvf~a~   74 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDAD---PEEL---SDVDVVFLAL   74 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETS---GHHH---TTESEEEE-S
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecc---hhHh---hcCCEEEecC
Confidence            589999999999998888775 456777766665411001222211 0 11 11111101   1111   6789999999


Q ss_pred             CCchHHHHH-HhcccCcEEEEEeccC
Q psy2961          89 GGNSATNLL-RTLVSKGVMVTYGGMS  113 (202)
Q Consensus        89 g~~~~~~~~-~~l~~~G~~v~~g~~~  113 (202)
                      +.....+.. .++..|-+++..+...
T Consensus        75 ~~~~~~~~~~~~~~~g~~ViD~s~~~  100 (121)
T PF01118_consen   75 PHGASKELAPKLLKAGIKVIDLSGDF  100 (121)
T ss_dssp             CHHHHHHHHHHHHHTTSEEEESSSTT
T ss_pred             chhHHHHHHHHHhhCCcEEEeCCHHH
Confidence            988777755 4556777888766433

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=96.60  E-value=0.035  Score=40.73  Aligned_cols=95  Identities=14%  Similarity=0.103  Sum_probs=56.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhC-CCCCeEEEec-
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDAS-IPKPKLALNC-   87 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~-~~~~d~vid~-   87 (202)
                      +|.+||=.|+|||  + +.+-+...|+.|+++.-+++..+.....+.+-|..  ++|.... +.+... ++.||+|+.- 
T Consensus        59 ~g~~vLDvGCGgG--~-Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~-~edl~~~~~~FDvV~cmE  132 (243)
T COG2227          59 PGLRVLDVGCGGG--I-LSEPLARLGASVTGIDASEKPIEVAKLHALESGVN--IDYRQAT-VEDLASAGGQFDVVTCME  132 (243)
T ss_pred             CCCeEEEecCCcc--H-hhHHHHHCCCeeEEecCChHHHHHHHHhhhhcccc--ccchhhh-HHHHHhcCCCccEEEEhh
Confidence            7889999999864  4 44445567899999988876433222233333333  3443211 222222 2679999752 


Q ss_pred             ----CCCch--HHHHHHhcccCcEEEEEe
Q psy2961          88 ----VGGNS--ATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        88 ----~g~~~--~~~~~~~l~~~G~~v~~g  110 (202)
                          +..+.  ...+.++++|+|.++...
T Consensus       133 VlEHv~dp~~~~~~c~~lvkP~G~lf~ST  161 (243)
T COG2227         133 VLEHVPDPESFLRACAKLVKPGGILFLST  161 (243)
T ss_pred             HHHccCCHHHHHHHHHHHcCCCcEEEEec
Confidence                23333  233778999999987743

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=96.58  E-value=0.011  Score=48.38  Aligned_cols=80  Identities=16%  Similarity=0.240  Sum_probs=54.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc-----------------cHHHHHHHHHhcCCceEeChhHHHh-
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD-----------------DIDKLKSYLKSLGADYVFTEEELRN-   71 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~-----------------~~~~~~~~~~~lg~~~v~~~~~~~~-   71 (202)
                      .+++|+|.|+| +.|+.++..++..|++|+.+-..+.                 -.....++++++|.+..++..-... 
T Consensus       140 ~~~~V~IIG~G-paGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~  218 (467)
T TIGR01318       140 TGKRVAVIGAG-PAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRDI  218 (467)
T ss_pred             CCCeEEEECCC-HHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCcc
Confidence            67899999999 9999999999999999777654431                 0112356778888876665311001 


Q ss_pred             -HHHhhCCCCCeEEEecCCCch
Q psy2961          72 -ISRDASIPKPKLALNCVGGNS   92 (202)
Q Consensus        72 -~~~~~~~~~~d~vid~~g~~~   92 (202)
                       +....  .++|.||.++|...
T Consensus       219 ~~~~~~--~~~D~vilAtGa~~  238 (467)
T TIGR01318       219 SLDDLL--EDYDAVFLGVGTYR  238 (467)
T ss_pred             CHHHHH--hcCCEEEEEeCCCC
Confidence             22222  36899999998753

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=96.58  E-value=0.024  Score=43.95  Aligned_cols=86  Identities=14%  Similarity=0.174  Sum_probs=55.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhCCCCCeEEEecC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNCV   88 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~~~~~d~vid~~   88 (202)
                      .|.+|.|.|.| .+|..+++.++.+|.+|++......     .+.....+...+   .++.+ +      ...|++.-.+
T Consensus       141 ~gkTvGIiG~G-~IG~~va~~l~afgm~v~~~d~~~~-----~~~~~~~~~~~~---~~Ld~lL------~~sDiv~lh~  205 (324)
T COG0111         141 AGKTVGIIGLG-RIGRAVAKRLKAFGMKVIGYDPYSP-----RERAGVDGVVGV---DSLDELL------AEADILTLHL  205 (324)
T ss_pred             cCCEEEEECCC-HHHHHHHHHHHhCCCeEEEECCCCc-----hhhhccccceec---ccHHHHH------hhCCEEEEcC
Confidence            48899999999 9999999999999999999876332     122222222221   23333 3      2346766544


Q ss_pred             C-CchHH-----HHHHhcccCcEEEEEe
Q psy2961          89 G-GNSAT-----NLLRTLVSKGVMVTYG  110 (202)
Q Consensus        89 g-~~~~~-----~~~~~l~~~G~~v~~g  110 (202)
                      . ++.+.     ..+..|+++..++.++
T Consensus       206 PlT~eT~g~i~~~~~a~MK~gailIN~a  233 (324)
T COG0111         206 PLTPETRGLINAEELAKMKPGAILINAA  233 (324)
T ss_pred             CCCcchhcccCHHHHhhCCCCeEEEECC
Confidence            3 22221     2577888888777765

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.57  E-value=0.024  Score=46.13  Aligned_cols=74  Identities=20%  Similarity=0.285  Sum_probs=49.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc-cHHHHHHHHHhcCCceEeC-hhHHHhHHHhhCCCCCeEEEec
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD-DIDKLKSYLKSLGADYVFT-EEELRNISRDASIPKPKLALNC   87 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~-~~~~~~~~~~~lg~~~v~~-~~~~~~~~~~~~~~~~d~vid~   87 (202)
                      .+.+|+|.|+| .+|+.+++.+...|++|+++..... ...+..+.+.++|...+.. ..+  ..     ..++|+||.+
T Consensus         4 ~~k~v~iiG~g-~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~-----~~~~d~vv~~   75 (450)
T PRK14106          4 KGKKVLVVGAG-VSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPE--EF-----LEGVDLVVVS   75 (450)
T ss_pred             CCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcch--hH-----hhcCCEEEEC
Confidence            46899999999 5999999999999999888776542 2222234455566553332 111  11     1468999998


Q ss_pred             CCCc
Q psy2961          88 VGGN   91 (202)
Q Consensus        88 ~g~~   91 (202)
                      +|-.
T Consensus        76 ~g~~   79 (450)
T PRK14106         76 PGVP   79 (450)
T ss_pred             CCCC
Confidence            8853

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=96.57  E-value=0.028  Score=43.04  Aligned_cols=95  Identities=12%  Similarity=0.070  Sum_probs=59.3

Q ss_pred             CEEEEeCCCcHHHHH-HHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecCCC
Q psy2961          12 DVVIQNGANSACGQN-VIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGG   90 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~-~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~g~   90 (202)
                      -+|.|.|.| .+|.. +..+.+..+.++.++++.+.+. +.+..++++|.....  .+++.+.+..+-.++|+||++++.
T Consensus         5 lrVAIIGtG-~IGt~hm~~l~~~~~velvAVvdid~es-~gla~A~~~Gi~~~~--~~ie~LL~~~~~~dIDiVf~AT~a   80 (302)
T PRK08300          5 LKVAIIGSG-NIGTDLMIKILRSEHLEPGAMVGIDPES-DGLARARRLGVATSA--EGIDGLLAMPEFDDIDIVFDATSA   80 (302)
T ss_pred             CeEEEEcCc-HHHHHHHHHHhcCCCcEEEEEEeCChhh-HHHHHHHHcCCCccc--CCHHHHHhCcCCCCCCEEEECCCH
Confidence            478999966 88986 5556656678999998776431 134567778866533  333332221111579999999998


Q ss_pred             chHHHHH-HhcccCcEEEEEe
Q psy2961          91 NSATNLL-RTLVSKGVMVTYG  110 (202)
Q Consensus        91 ~~~~~~~-~~l~~~G~~v~~g  110 (202)
                      ..-.+.. .++..|-+++...
T Consensus        81 ~~H~e~a~~a~eaGk~VID~s  101 (302)
T PRK08300         81 GAHVRHAAKLREAGIRAIDLT  101 (302)
T ss_pred             HHHHHHHHHHHHcCCeEEECC
Confidence            7665544 4445555555543

>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=96.56  E-value=0.036  Score=41.11  Aligned_cols=37  Identities=22%  Similarity=0.410  Sum_probs=32.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      .+.+++|+|+++++|.+++..+...|++++.+.++.+
T Consensus         4 ~~~~ilITGas~GiG~aia~~l~~~G~~v~~~~~~~~   40 (251)
T COG1028           4 SGKVALVTGASSGIGRAIARALAREGARVVVAARRSE   40 (251)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEcCCCc
Confidence            5689999999999999998888899999888888765

>PRK13243 glyoxylate reductase; Reviewed

Probab=96.55  E-value=0.036  Score=43.28  Aligned_cols=37  Identities=24%  Similarity=0.357  Sum_probs=32.0

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      -.|.+|.|.|.| .+|..+++.++.+|++|++..++.+
T Consensus       148 L~gktvgIiG~G-~IG~~vA~~l~~~G~~V~~~d~~~~  184 (333)
T PRK13243        148 VYGKTIGIIGFG-RIGQAVARRAKGFGMRILYYSRTRK  184 (333)
T ss_pred             CCCCEEEEECcC-HHHHHHHHHHHHCCCEEEEECCCCC
Confidence            368999999998 9999999999999999887766543

>PRK07402 precorrin-6B methylase; Provisional

Probab=96.55  E-value=0.048  Score=39.08  Aligned_cols=103  Identities=17%  Similarity=0.235  Sum_probs=56.9

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHC-CCcEEEEecCcccHHHHHHHHHhcCCceEeC-hhHHHh-HHHhhCCCC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVFT-EEELRN-ISRDASIPK   80 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~-g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~-~~~~~~-~~~~~~~~~   80 (202)
                      ...+++++++||=.|+|  .|..++.+++.. +.+++++-.+++......+.+++++...+.- ..+..+ +....  ..
T Consensus        34 ~~l~~~~~~~VLDiG~G--~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~--~~  109 (196)
T PRK07402         34 SQLRLEPDSVLWDIGAG--TGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLA--PA  109 (196)
T ss_pred             HhcCCCCCCEEEEeCCC--CCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCC--CC
Confidence            34467789999888886  466777777654 5678888777653322233334455432211 122222 22211  12


Q ss_pred             Ce-EEEecCCC--chHHHHHHhcccCcEEEEEe
Q psy2961          81 PK-LALNCVGG--NSATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        81 ~d-~vid~~g~--~~~~~~~~~l~~~G~~v~~g  110 (202)
                      +| ++++....  ..+..+.+.|+++|+++...
T Consensus       110 ~d~v~~~~~~~~~~~l~~~~~~LkpgG~li~~~  142 (196)
T PRK07402        110 PDRVCIEGGRPIKEILQAVWQYLKPGGRLVATA  142 (196)
T ss_pred             CCEEEEECCcCHHHHHHHHHHhcCCCeEEEEEe
Confidence            34 44543221  12234678999999998875

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=96.55  E-value=0.0092  Score=50.97  Aligned_cols=77  Identities=16%  Similarity=0.053  Sum_probs=48.5

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHC-CCcEEEEecCcccHHHHHHHHHhc-CCceEe-ChhHHHh-HHHhhCCCCCe
Q psy2961           7 SLSPGDVVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSL-GADYVF-TEEELRN-ISRDASIPKPK   82 (202)
Q Consensus         7 ~~~~g~~VlI~g~~~~vG~~~i~la~~~-g~~vi~~~~~~~~~~~~~~~~~~l-g~~~v~-~~~~~~~-~~~~~~~~~~d   82 (202)
                      ..+++.+|||+||+|-+|..+++.+... |.+|+++.+....    ....... +.+.+. |-.+... +.+..  .++|
T Consensus       311 ~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~----~~~~~~~~~~~~~~gDl~d~~~~l~~~l--~~~D  384 (660)
T PRK08125        311 SAKRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDA----ISRFLGHPRFHFVEGDISIHSEWIEYHI--KKCD  384 (660)
T ss_pred             hhhcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchh----hhhhcCCCceEEEeccccCcHHHHHHHh--cCCC
Confidence            3467889999999999999999877764 7899998876542    1211111 222222 2122222 33333  3689


Q ss_pred             EEEecCC
Q psy2961          83 LALNCVG   89 (202)
Q Consensus        83 ~vid~~g   89 (202)
                      +||.+++
T Consensus       385 ~ViHlAa  391 (660)
T PRK08125        385 VVLPLVA  391 (660)
T ss_pred             EEEECcc
Confidence            9999775

>PRK14982 acyl-ACP reductase; Provisional

Probab=96.55  E-value=0.24  Score=38.79  Aligned_cols=160  Identities=13%  Similarity=0.077  Sum_probs=83.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHH-HCCC-cEEEEecCcccHHHHHHHH-HhcCCceEeChhHHHhHHHhhCCCCCeEEEe
Q psy2961          10 PGDVVIQNGANSACGQNVIQIAR-HWGL-KTINIVRNRDDIDKLKSYL-KSLGADYVFTEEELRNISRDASIPKPKLALN   86 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~-~~g~-~vi~~~~~~~~~~~~~~~~-~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid   86 (202)
                      .+.+|+|+||+|.+|..+++.+. ..|. +++.+.++.+    +...+ .+++...+   .++.+   ..  .+.|+|+.
T Consensus       154 ~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~----rl~~La~el~~~~i---~~l~~---~l--~~aDiVv~  221 (340)
T PRK14982        154 SKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQE----RLQELQAELGGGKI---LSLEE---AL--PEADIVVW  221 (340)
T ss_pred             CCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHH----HHHHHHHHhccccH---HhHHH---HH--ccCCEEEE
Confidence            56899999999899999887775 4566 4455444433    33333 33432111   12222   22  46899999


Q ss_pred             cCCCchHH-HHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEE-------Eech-hH---hhhcccHHHHHHHHH
Q psy2961          87 CVGGNSAT-NLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRG-------HWMT-RW---QKENKESAERKSMMN  154 (202)
Q Consensus        87 ~~g~~~~~-~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g-------~~~~-~~---~~~~~~~~~~~~~~~  154 (202)
                      +++.+... ---..+++.-.++.++.+..-....     -..++.++-       .... ..   ......+.....++.
T Consensus       222 ~ts~~~~~~I~~~~l~~~~~viDiAvPRDVd~~v-----~~~~V~v~~gG~V~~p~~vd~~l~~~v~~~~~~r~~~Ac~A  296 (340)
T PRK14982        222 VASMPKGVEIDPETLKKPCLMIDGGYPKNLDTKV-----QGPGIHVLKGGIVEHSLDIDWKIMEIAEMDNPQRQMFACFA  296 (340)
T ss_pred             CCcCCcCCcCCHHHhCCCeEEEEecCCCCCCccc-----CCCCEEEEeCCccccCCCcCccHHHHHhccchhhHHHHHHH
Confidence            99875542 2224557777777877443221111     123333322       1111 00   011111112233344


Q ss_pred             HHHHHHHcCCCCCC-ccee-echhhHHHHHHHHh
Q psy2961         155 ELTEMMRTGKLAAP-AHKF-VTLKNFQEALMNTM  186 (202)
Q Consensus       155 ~~~~~~~~g~~~~~-~~~~-~~~~~~~~a~~~~~  186 (202)
                      +.+=+--+|..... .-+. .+++++++-.+...
T Consensus       297 EtiiL~leg~~~~fS~Gr~~i~~~~v~~i~~~a~  330 (340)
T PRK14982        297 EAMLLEFEGCHTNFSWGRNQITLEKMEFIGEASV  330 (340)
T ss_pred             HHHHHHhcCCccCCCcCccccCHHHHHHHHHHHH
Confidence            44444456666653 3344 78889888877765

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=96.54  E-value=0.14  Score=37.78  Aligned_cols=34  Identities=12%  Similarity=0.150  Sum_probs=29.3

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCc
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR   45 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~   45 (202)
                      ..+|+|.|.| ++|..++..+...|..-+.+++.+
T Consensus        11 ~~~VlVvG~G-GvGs~va~~Lar~GVg~i~LvD~D   44 (231)
T cd00755          11 NAHVAVVGLG-GVGSWAAEALARSGVGKLTLIDFD   44 (231)
T ss_pred             CCCEEEECCC-HHHHHHHHHHHHcCCCEEEEECCC
Confidence            4689999999 999999999999999878777654

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=96.53  E-value=0.011  Score=46.93  Aligned_cols=75  Identities=11%  Similarity=0.053  Sum_probs=47.7

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCCCeEEEec
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNC   87 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~vid~   87 (202)
                      ..+++|||+|++|-+|..++..+...|.+|+++.+....   .... ..++...+. |-.+...+....  .++|+||.+
T Consensus        19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~---~~~~-~~~~~~~~~~Dl~d~~~~~~~~--~~~D~Vih~   92 (370)
T PLN02695         19 SEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNE---HMSE-DMFCHEFHLVDLRVMENCLKVT--KGVDHVFNL   92 (370)
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecccc---cccc-ccccceEEECCCCCHHHHHHHH--hCCCEEEEc
Confidence            467899999999999999999999999999988865431   0110 011222222 222222233322  368999998


Q ss_pred             CC
Q psy2961          88 VG   89 (202)
Q Consensus        88 ~g   89 (202)
                      ++
T Consensus        93 Aa   94 (370)
T PLN02695         93 AA   94 (370)
T ss_pred             cc
Confidence            85

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=96.53  E-value=0.0081  Score=44.37  Aligned_cols=105  Identities=17%  Similarity=0.196  Sum_probs=57.1

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCC--CcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCCC
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWG--LKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKP   81 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g--~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~~   81 (202)
                      ....++|++||=.|+|  .|..+..+++..+  .+|+++.-+++-++...+.++..+...|. -..|.+++.  .....+
T Consensus        42 ~~~~~~g~~vLDv~~G--tG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp--~~d~sf  117 (233)
T PF01209_consen   42 LLGLRPGDRVLDVACG--TGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLP--FPDNSF  117 (233)
T ss_dssp             HHT--S--EEEEET-T--TSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB----S-TT-E
T ss_pred             ccCCCCCCEEEEeCCC--hHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhc--CCCCce
Confidence            3467889999888886  5788889998876  47788777776433333444444433221 011111110  123579


Q ss_pred             eEEEecCCCch-------HHHHHHhcccCcEEEEEeccC
Q psy2961          82 KLALNCVGGNS-------ATNLLRTLVSKGVMVTYGGMS  113 (202)
Q Consensus        82 d~vid~~g~~~-------~~~~~~~l~~~G~~v~~g~~~  113 (202)
                      |+|..+.|-..       +.+..+.|+|||+++.+....
T Consensus       118 D~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~  156 (233)
T PF01209_consen  118 DAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSK  156 (233)
T ss_dssp             EEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             eEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccC
Confidence            99998776322       334788999999998876433

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=96.53  E-value=0.064  Score=40.80  Aligned_cols=76  Identities=11%  Similarity=0.024  Sum_probs=48.8

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCCCeEEEecCCC
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNCVGG   90 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~vid~~g~   90 (202)
                      .+|||+|+.|-+|.-++..+...|.+|+++..-....   .+.+...-...+. |-.|-..+.+.+....+|.||.+++.
T Consensus         1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~---~~~v~~~~~~f~~gDi~D~~~L~~vf~~~~idaViHFAa~   77 (329)
T COG1087           1 MKVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGH---KIALLKLQFKFYEGDLLDRALLTAVFEENKIDAVVHFAAS   77 (329)
T ss_pred             CeEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCC---HHHhhhccCceEEeccccHHHHHHHHHhcCCCEEEECccc
Confidence            3799999999999998888888999998887655542   2333222123222 21221114444444689999998874

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.52  E-value=0.03  Score=37.91  Aligned_cols=76  Identities=8%  Similarity=0.044  Sum_probs=57.0

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCV   88 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~   88 (202)
                      -.|.+|+|+|.+..+|.-++.++...|+.|+.+.+...+                     +.   +..  ...|+|+-++
T Consensus        26 ~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~---------------------l~---~~v--~~ADIVvsAt   79 (140)
T cd05212          26 LDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQ---------------------LQ---SKV--HDADVVVVGS   79 (140)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcC---------------------HH---HHH--hhCCEEEEec
Confidence            478999999999999999999999999987776533211                     11   111  5679999999


Q ss_pred             CCchHHHHHHhcccCcEEEEEec
Q psy2961          89 GGNSATNLLRTLVSKGVMVTYGG  111 (202)
Q Consensus        89 g~~~~~~~~~~l~~~G~~v~~g~  111 (202)
                      |.+... --+++++|..++.+|.
T Consensus        80 g~~~~i-~~~~ikpGa~Vidvg~  101 (140)
T cd05212          80 PKPEKV-PTEWIKPGATVINCSP  101 (140)
T ss_pred             CCCCcc-CHHHcCCCCEEEEcCC
Confidence            988542 3568999999998873

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK07578 short chain dehydrogenase; Provisional

Probab=96.52  E-value=0.055  Score=38.68  Aligned_cols=63  Identities=17%  Similarity=0.272  Sum_probs=40.4

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhCCCCCeEEEecCCC
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNCVGG   90 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~~~~~d~vid~~g~   90 (202)
                      +++|.|+++++|..++..+... .+|+.+.++.+.          +-++ +-+.++... +.+.   +++|++|.++|.
T Consensus         2 ~vlItGas~giG~~la~~l~~~-~~vi~~~r~~~~----------~~~D-~~~~~~~~~~~~~~---~~id~lv~~ag~   65 (199)
T PRK07578          2 KILVIGASGTIGRAVVAELSKR-HEVITAGRSSGD----------VQVD-ITDPASIRALFEKV---GKVDAVVSAAGK   65 (199)
T ss_pred             eEEEEcCCcHHHHHHHHHHHhc-CcEEEEecCCCc----------eEec-CCChHHHHHHHHhc---CCCCEEEECCCC
Confidence            6899999999999988776666 888887765420          0011 112333333 3322   468999988873

>PLN02650 dihydroflavonol-4-reductase

Probab=96.51  E-value=0.016  Score=45.51  Aligned_cols=37  Identities=19%  Similarity=0.202  Sum_probs=32.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      ...+|||+|++|.+|..++..+...|.+|++++++.+
T Consensus         4 ~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~   40 (351)
T PLN02650          4 QKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPA   40 (351)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcc
Confidence            3468999999999999999999889999998887665

>PRK06924 short chain dehydrogenase; Provisional

Probab=96.51  E-value=0.032  Score=41.40  Aligned_cols=34  Identities=24%  Similarity=0.334  Sum_probs=30.5

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCc
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNR   45 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~   45 (202)
                      ++++|+|++|++|..+++.+...|++|+.+.+++
T Consensus         2 k~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~   35 (251)
T PRK06924          2 RYVIITGTSQGLGEAIANQLLEKGTHVISISRTE   35 (251)
T ss_pred             cEEEEecCCchHHHHHHHHHHhcCCEEEEEeCCc
Confidence            4799999999999999998888999999888766

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=96.51  E-value=0.049  Score=40.70  Aligned_cols=89  Identities=20%  Similarity=0.272  Sum_probs=53.7

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCc-EEEEecCcccHHHHHHHHHh----cCCceEeChhHHHhHHHhhCCCCCe
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKS----LGADYVFTEEELRNISRDASIPKPK   82 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~~-vi~~~~~~~~~~~~~~~~~~----lg~~~v~~~~~~~~~~~~~~~~~~d   82 (202)
                      +.++++||-.|+|+  |..++.+++ .|+. ++++..++.    ..+.+++    .+....+.      +.  .+...+|
T Consensus       117 ~~~~~~VLDiGcGs--G~l~i~~~~-~g~~~v~giDis~~----~l~~A~~n~~~~~~~~~~~------~~--~~~~~fD  181 (250)
T PRK00517        117 VLPGKTVLDVGCGS--GILAIAAAK-LGAKKVLAVDIDPQ----AVEAARENAELNGVELNVY------LP--QGDLKAD  181 (250)
T ss_pred             cCCCCEEEEeCCcH--HHHHHHHHH-cCCCeEEEEECCHH----HHHHHHHHHHHcCCCceEE------Ec--cCCCCcC
Confidence            46889999999984  777776554 5765 666665554    3344332    23211010      00  0012589


Q ss_pred             EEEecCCCchH----HHHHHhcccCcEEEEEec
Q psy2961          83 LALNCVGGNSA----TNLLRTLVSKGVMVTYGG  111 (202)
Q Consensus        83 ~vid~~g~~~~----~~~~~~l~~~G~~v~~g~  111 (202)
                      +|+........    ..+.+.|+++|.++..+.
T Consensus       182 ~Vvani~~~~~~~l~~~~~~~LkpgG~lilsgi  214 (250)
T PRK00517        182 VIVANILANPLLELAPDLARLLKPGGRLILSGI  214 (250)
T ss_pred             EEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence            99876654432    236788999999998763

>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA

Probab=96.51  E-value=0.026  Score=54.76  Aligned_cols=38  Identities=18%  Similarity=0.254  Sum_probs=30.2

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHH-HHHHHCCCcEEEEecC
Q psy2961           7 SLSPGDVVIQNGANSACGQNVI-QIARHWGLKTINIVRN   44 (202)
Q Consensus         7 ~~~~g~~VlI~g~~~~vG~~~i-~la~~~g~~vi~~~~~   44 (202)
                      .+.+|+++||+|+++|+|..++ .|++..|++++.+.++
T Consensus      1993 ~l~~g~vvLVTGGarGIG~aiA~~LA~~~ga~viL~gRs 2031 (2582)
T TIGR02813      1993 ALNSDDVFLVTGGAKGVTFECALELAKQCQAHFILAGRS 2031 (2582)
T ss_pred             ccCCCCEEEEeCCCCHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            3567899999999999998765 4555668998887766

Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.

>PRK08655 prephenate dehydrogenase; Provisional

Probab=96.50  E-value=0.035  Score=45.04  Aligned_cols=45  Identities=20%  Similarity=0.240  Sum_probs=33.0

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCC
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA   60 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~   60 (202)
                      +|.|.|+.|.+|.+++..++..|.+|++..++++.   ..+.+.++|.
T Consensus         2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~---~~~~a~~~gv   46 (437)
T PRK08655          2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKK---GKEVAKELGV   46 (437)
T ss_pred             EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHH---HHHHHHHcCC
Confidence            68899976699999999999999988877766542   1244445554

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=96.50  E-value=0.0085  Score=47.00  Aligned_cols=78  Identities=8%  Similarity=0.072  Sum_probs=45.4

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhc--CC--ceEe-ChhHHHhHHHhhCCCCCeEEEe
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL--GA--DYVF-TEEELRNISRDASIPKPKLALN   86 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~l--g~--~~v~-~~~~~~~~~~~~~~~~~d~vid   86 (202)
                      .+|||+|++|.+|..+++.+...|.+++++.++..... ....+..+  +.  ..+. |-.+...+.+...+.++|+||+
T Consensus         2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vih   80 (355)
T PRK10217          2 RKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAG-NLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVMH   80 (355)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCcccc-chhhhhhcccCCceEEEECCCcChHHHHHHHhhcCCCEEEE
Confidence            37999999999999999999999988766655432100 11111111  11  1111 2222212333333346899999


Q ss_pred             cCCC
Q psy2961          87 CVGG   90 (202)
Q Consensus        87 ~~g~   90 (202)
                      +++.
T Consensus        81 ~A~~   84 (355)
T PRK10217         81 LAAE   84 (355)
T ss_pred             CCcc
Confidence            9864

>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]

Probab=96.49  E-value=0.019  Score=43.71  Aligned_cols=60  Identities=20%  Similarity=0.369  Sum_probs=48.4

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT   65 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~   65 (202)
                      +.+.++||.+| |-+.+|.+|...+.+|+.+|++++.+.... ...|+++.++.+|++.+..
T Consensus        55 ~~G~l~pG~tI-VE~TSGNTGI~LA~vaa~~Gy~~iivmP~~-~S~er~~~l~a~GAevi~t  114 (300)
T COG0031          55 KRGLLKPGGTI-VEATSGNTGIALAMVAAAKGYRLIIVMPET-MSQERRKLLRALGAEVILT  114 (300)
T ss_pred             HcCCCCCCCEE-EEcCCChHHHHHHHHHHHcCCcEEEEeCCC-CCHHHHHHHHHcCCEEEEc
Confidence            45668999965 668888999999999999999988877543 3467889999999887763

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=96.48  E-value=0.14  Score=37.73  Aligned_cols=103  Identities=13%  Similarity=0.125  Sum_probs=61.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccH----------------HHHH----HHHHhcCCc-eEeChhH
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDI----------------DKLK----SYLKSLGAD-YVFTEEE   68 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~----------------~~~~----~~~~~lg~~-~v~~~~~   68 (202)
                      ..++|+|.|.| |+|.+++..+...|...+.+.+-++-.                ..+.    +.++...+. .|....+
T Consensus        29 ~~~~V~VvGiG-GVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~  107 (263)
T COG1179          29 KQAHVCVVGIG-GVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAIND  107 (263)
T ss_pred             hhCcEEEEecC-chhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHh
Confidence            35789999999 899999999999999877776544300                0001    111111111 1111122


Q ss_pred             H--Hh-HHHhhCCCCCeEEEecCCCchHHH-HHH-hcccCcEEEEEeccCC
Q psy2961          69 L--RN-ISRDASIPKPKLALNCVGGNSATN-LLR-TLVSKGVMVTYGGMSR  114 (202)
Q Consensus        69 ~--~~-~~~~~~~~~~d~vid~~g~~~~~~-~~~-~l~~~G~~v~~g~~~~  114 (202)
                      +  ++ +.+.+. .++|+|+||.-.-.... ++. |.+.+=.++..++..+
T Consensus       108 f~t~en~~~~~~-~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Gag~  157 (263)
T COG1179         108 FITEENLEDLLS-KGFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGAGG  157 (263)
T ss_pred             hhCHhHHHHHhc-CCCCEEEEchhhhHHHHHHHHHHHHcCCCEEeeccccC
Confidence            1  12 444444 48999999998776654 444 5555566777665544

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=96.48  E-value=0.0087  Score=45.39  Aligned_cols=60  Identities=18%  Similarity=0.241  Sum_probs=41.4

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecCCC
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGG   90 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~g~   90 (202)
                      +|||+|++|.+|..+++.+...|.+|+++.++.-              + +.+.+++.+   ...+..+|+||++++.
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~~~--------------d-~~~~~~~~~---~~~~~~~d~vi~~a~~   60 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGRVVVALTSSQL--------------D-LTDPEALER---LLRAIRPDAVVNTAAY   60 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCccc--------------C-CCCHHHHHH---HHHhCCCCEEEECCcc
Confidence            4899999999999999999989999888775411              1 112233333   2222457999998864

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PRK06849 hypothetical protein; Provisional

Probab=96.48  E-value=0.031  Score=44.55  Aligned_cols=79  Identities=9%  Similarity=0.091  Sum_probs=51.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-----ChhHHHh-HHHhhCCCCCeE
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-----TEEELRN-ISRDASIPKPKL   83 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-----~~~~~~~-~~~~~~~~~~d~   83 (202)
                      ...+|||+|++.+.|+.+++.++..|.+|+++...+.........+..   -..+     +..++.+ +.+.....++|+
T Consensus         3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~~d~---~~~~p~p~~d~~~~~~~L~~i~~~~~id~   79 (389)
T PRK06849          3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLKYPLSRFSRAVDG---FYTIPSPRWDPDAYIQALLSIVQRENIDL   79 (389)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHhhhh---eEEeCCCCCCHHHHHHHHHHHHHHcCCCE
Confidence            457999999998899999999999999999987765421111111111   1122     2233445 555555567999


Q ss_pred             EEecCCCc
Q psy2961          84 ALNCVGGN   91 (202)
Q Consensus        84 vid~~g~~   91 (202)
                      +|-+....
T Consensus        80 vIP~~e~~   87 (389)
T PRK06849         80 LIPTCEEV   87 (389)
T ss_pred             EEECChHH
Confidence            99777643

>PLN00198 anthocyanidin reductase; Provisional

Probab=96.46  E-value=0.024  Score=44.22  Aligned_cols=37  Identities=14%  Similarity=0.130  Sum_probs=32.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      .+.+|||+|++|.+|..+++.+...|++|+++++..+
T Consensus         8 ~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~   44 (338)
T PLN00198          8 GKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPE   44 (338)
T ss_pred             CCCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            4789999999999999999999989999988876654

>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.46  E-value=0.015  Score=42.75  Aligned_cols=71  Identities=17%  Similarity=0.196  Sum_probs=46.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceE-eChhH-HHhHHHhhCCCCCeEEEec
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEE-LRNISRDASIPKPKLALNC   87 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v-~~~~~-~~~~~~~~~~~~~d~vid~   87 (202)
                      .+.+++|+|+++++|..+++.+...|++|+.+.++...     . . .-....+ .|-.+ +..+.+..  +++|++|.+
T Consensus         4 ~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~~-----~-~-~~~~~~~~~D~~~~~~~~~~~~--~~id~lv~~   74 (235)
T PRK06550          4 MTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDKP-----D-L-SGNFHFLQLDLSDDLEPLFDWV--PSVDILCNT   74 (235)
T ss_pred             CCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCccc-----c-c-CCcEEEEECChHHHHHHHHHhh--CCCCEEEEC
Confidence            46799999999999999999888889998888766431     1 1 0011111 12222 23333322  478999998


Q ss_pred             CC
Q psy2961          88 VG   89 (202)
Q Consensus        88 ~g   89 (202)
                      .|
T Consensus        75 ag   76 (235)
T PRK06550         75 AG   76 (235)
T ss_pred             CC
Confidence            87

>TIGR00477 tehB tellurite resistance protein TehB

Probab=96.45  E-value=0.039  Score=39.58  Aligned_cols=99  Identities=9%  Similarity=-0.006  Sum_probs=54.7

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEE
Q psy2961           6 NSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLAL   85 (202)
Q Consensus         6 ~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vi   85 (202)
                      ....++.+||-.|+|  .|..+..+++ .|.+|+++.-+++..+...+.+...+........+....  .. ...+|+|+
T Consensus        26 ~~~~~~~~vLDiGcG--~G~~a~~la~-~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~--~~-~~~fD~I~   99 (195)
T TIGR00477        26 VKTVAPCKTLDLGCG--QGRNSLYLSL-AGYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAA--AL-NEDYDFIF   99 (195)
T ss_pred             hccCCCCcEEEeCCC--CCHHHHHHHH-CCCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhc--cc-cCCCCEEE
Confidence            344556789999986  5778888877 588888887776532211222223333211111111110  01 24689998


Q ss_pred             ecCCC-----c----hHHHHHHhcccCcEEEEEe
Q psy2961          86 NCVGG-----N----SATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        86 d~~g~-----~----~~~~~~~~l~~~G~~v~~g  110 (202)
                      .+..-     +    .+..+.+.|+|||.++.+.
T Consensus       100 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~  133 (195)
T TIGR00477       100 STVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVA  133 (195)
T ss_pred             EecccccCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence            65321     1    1223567899999966554

Part of a tellurite-reducing operon tehA and tehB

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=96.45  E-value=0.032  Score=44.51  Aligned_cols=75  Identities=21%  Similarity=0.283  Sum_probs=53.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVG   89 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~g   89 (202)
                      .+.+|||.|+| -+|..+++-+...|.+.+.++.+.-.  ...+.++++|+.. +..++..+   ..  ..+|+||-++|
T Consensus       177 ~~~~vlvIGAG-em~~lva~~L~~~g~~~i~IaNRT~e--rA~~La~~~~~~~-~~l~el~~---~l--~~~DvVissTs  247 (414)
T COG0373         177 KDKKVLVIGAG-EMGELVAKHLAEKGVKKITIANRTLE--RAEELAKKLGAEA-VALEELLE---AL--AEADVVISSTS  247 (414)
T ss_pred             ccCeEEEEccc-HHHHHHHHHHHhCCCCEEEEEcCCHH--HHHHHHHHhCCee-ecHHHHHH---hh--hhCCEEEEecC
Confidence            57889999999 89999999999999877766655431  2445667888543 33344333   11  46799999999


Q ss_pred             CchH
Q psy2961          90 GNSA   93 (202)
Q Consensus        90 ~~~~   93 (202)
                      .+..
T Consensus       248 a~~~  251 (414)
T COG0373         248 APHP  251 (414)
T ss_pred             CCcc
Confidence            8764

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=96.44  E-value=0.045  Score=39.49  Aligned_cols=80  Identities=19%  Similarity=0.192  Sum_probs=50.2

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHH-HhcCCceEeChhHHHhHHHhhCCCCCeEEEec
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGADYVFTEEELRNISRDASIPKPKLALNC   87 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~   87 (202)
                      -.|.+|+|.|.| .+|..+++.+...|++|++...+++    +.+.+ ..+|+.. ++.+++.       ...+|+++-|
T Consensus        26 l~gk~v~I~G~G-~vG~~~A~~L~~~G~~Vvv~D~~~~----~~~~~~~~~g~~~-v~~~~l~-------~~~~Dv~vp~   92 (200)
T cd01075          26 LEGKTVAVQGLG-KVGYKLAEHLLEEGAKLIVADINEE----AVARAAELFGATV-VAPEEIY-------SVDADVFAPC   92 (200)
T ss_pred             CCCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEcCCHH----HHHHHHHHcCCEE-Ecchhhc-------cccCCEEEec
Confidence            367899999998 8999999999999999886554433    34444 3446543 3332211       1357888866


Q ss_pred             CCCchH-HHHHHhcc
Q psy2961          88 VGGNSA-TNLLRTLV  101 (202)
Q Consensus        88 ~g~~~~-~~~~~~l~  101 (202)
                      ..+... ...++.|+
T Consensus        93 A~~~~I~~~~~~~l~  107 (200)
T cd01075          93 ALGGVINDDTIPQLK  107 (200)
T ss_pred             ccccccCHHHHHHcC
Confidence            544332 33455554

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=96.43  E-value=0.017  Score=44.40  Aligned_cols=33  Identities=24%  Similarity=0.427  Sum_probs=28.9

Q ss_pred             EEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961          14 VIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus        14 VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      |||+||+|.+|..+++.+...|.+++.++++.+
T Consensus         2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~~   34 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLK   34 (308)
T ss_pred             EEEecCCcHHHHHHHHHHHhCCCceEEEecCCC
Confidence            799999999999999988888998888877654

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=96.41  E-value=0.037  Score=41.23  Aligned_cols=101  Identities=13%  Similarity=0.082  Sum_probs=60.2

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHC--CCcEEEEecCcccHHHHHHHHHhcCCceEeC--hhHHHh-HHHhhC---
Q psy2961           6 NSLSPGDVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGADYVFT--EEELRN-ISRDAS---   77 (202)
Q Consensus         6 ~~~~~g~~VlI~g~~~~vG~~~i~la~~~--g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~--~~~~~~-~~~~~~---   77 (202)
                      .+....++||-.|.+  +|..++.+|+.+  +.+++++-..++.....++.++..|...-+.  ..+..+ +.+...   
T Consensus        75 ~~~~~ak~iLEiGT~--~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~  152 (247)
T PLN02589         75 LKLINAKNTMEIGVY--TGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGK  152 (247)
T ss_pred             HHHhCCCEEEEEeCh--hhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccc
Confidence            344556788888875  788999998876  4577777766653333344455566432222  123333 444322   


Q ss_pred             -CCCCeEEEe-cCCCch---HHHHHHhcccCcEEEE
Q psy2961          78 -IPKPKLALN-CVGGNS---ATNLLRTLVSKGVMVT  108 (202)
Q Consensus        78 -~~~~d~vid-~~g~~~---~~~~~~~l~~~G~~v~  108 (202)
                       ...||+||- +--..+   +..++++|++||.++.
T Consensus       153 ~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~  188 (247)
T PLN02589        153 YHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGY  188 (247)
T ss_pred             cCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEE
Confidence             247999754 432222   2336789999998775

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=96.41  E-value=0.025  Score=41.24  Aligned_cols=95  Identities=9%  Similarity=0.021  Sum_probs=58.0

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHH-HhcCCceEe--------------C--hhHHHh
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGADYVF--------------T--EEELRN   71 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~v~--------------~--~~~~~~   71 (202)
                      .++.+||+.|+|  .|.-++-+|. .|.+|+++--++..    .+.+ ++.+.....              +  -.|+.+
T Consensus        33 ~~~~rvLd~GCG--~G~da~~LA~-~G~~V~gvD~S~~A----i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~  105 (213)
T TIGR03840        33 PAGARVFVPLCG--KSLDLAWLAE-QGHRVLGVELSEIA----VEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFA  105 (213)
T ss_pred             CCCCeEEEeCCC--chhHHHHHHh-CCCeEEEEeCCHHH----HHHHHHHcCCCcceeccccceeeecCceEEEEccCCC
Confidence            577899999997  5888888875 79999999888763    4443 222221100              0  011111


Q ss_pred             HHHhhCCCCCeEEEecCCC---------chHHHHHHhcccCcEEEEEec
Q psy2961          72 ISRDASIPKPKLALNCVGG---------NSATNLLRTLVSKGVMVTYGG  111 (202)
Q Consensus        72 ~~~~~~~~~~d~vid~~g~---------~~~~~~~~~l~~~G~~v~~g~  111 (202)
                      .... ....+|.|+|+..-         ..+..+.++|+|+|+++.++.
T Consensus       106 ~~~~-~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~  153 (213)
T TIGR03840       106 LTAA-DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL  153 (213)
T ss_pred             CCcc-cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence            0000 01458999997642         123347789999999777764

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.41  E-value=0.039  Score=43.15  Aligned_cols=35  Identities=20%  Similarity=0.216  Sum_probs=29.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCc
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR   45 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~   45 (202)
                      .+.+|+|.|+| ++|..+++.+...|...+.+++.+
T Consensus        23 ~~~~VlIiG~G-glGs~va~~La~aGvg~i~lvD~D   57 (338)
T PRK12475         23 REKHVLIVGAG-ALGAANAEALVRAGIGKLTIADRD   57 (338)
T ss_pred             cCCcEEEECCC-HHHHHHHHHHHHcCCCEEEEEcCC
Confidence            35689999998 899999999999999777777665

>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase

Probab=96.39  E-value=0.089  Score=41.52  Aligned_cols=95  Identities=12%  Similarity=0.301  Sum_probs=62.1

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHC--CCcEEEEecCcccHHHHHHHHHhcCCceEe--Chh---HHHh-H-----------
Q psy2961          12 DVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGADYVF--TEE---ELRN-I-----------   72 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~--g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~--~~~---~~~~-~-----------   72 (202)
                      ++|.|+|++|++|..+..+.+..  ..+|++.+...+ .+...++++++.+..+.  +..   .+.. +           
T Consensus         2 k~i~IlGsTGSIG~qtL~Vi~~~~~~f~v~~Laa~~n-~~~L~~q~~~f~p~~v~i~d~~~~~~l~~~l~~~~~~~~v~~   80 (389)
T TIGR00243         2 KQIVILGSTGSIGKSTLDVVRHNPDHFQVVALSAGKN-VALMVEQILEFRPKFVAIDDEASLKDLKTMLQQQGSRTEVLV   80 (389)
T ss_pred             ceEEEEecChHHHHHHHHHHHhCccccEEEEEEcCCC-HHHHHHHHHHcCCCEEEEcCHHHHHHHHHHhhcCCCCcEEEE
Confidence            47999999999999999998865  378888876654 34456777888887766  221   1111 1           


Q ss_pred             -----HHhhCCCCCeEEEecCCCchHHH-HHHhcccCcEEE
Q psy2961          73 -----SRDASIPKPKLALNCVGGNSATN-LLRTLVSKGVMV  107 (202)
Q Consensus        73 -----~~~~~~~~~d~vid~~g~~~~~~-~~~~l~~~G~~v  107 (202)
                           .+......+|+|+.+..|-.... .+..++.|-++.
T Consensus        81 G~~~l~~l~~~~~~D~vv~AivG~aGL~pt~~Ai~~gk~ia  121 (389)
T TIGR00243        81 GEEGICEMAALEDVDQVMNAIVGAAGLLPTLAAIRAGKTIA  121 (389)
T ss_pred             CHHHHHHHHcCCCCCEEEEhhhcHhhHHHHHHHHHCCCcEE
Confidence                 11222246899999886655443 566665554443

1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.

>KOG1252|consensus

Probab=96.39  E-value=0.018  Score=44.19  Aligned_cols=60  Identities=20%  Similarity=0.340  Sum_probs=51.0

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeC
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT   65 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~   65 (202)
                      .+.+.||.++||-..+|.+|...+.+++..|+++|.+.... -..||+..++++|++-|..
T Consensus        97 ~G~i~pg~stliEpTSGNtGigLA~~~a~~Gyk~i~tmP~~-ms~Ek~~~l~a~Gaeii~t  156 (362)
T KOG1252|consen   97 KGLITPGKSTLIEPTSGNTGIGLAYMAALRGYKCIITMPEK-MSKEKRILLRALGAEIILT  156 (362)
T ss_pred             cCCccCCceEEEecCCCchHHHHHHHHHHcCceEEEEechh-hhHHHHHHHHHcCCEEEec
Confidence            45689999999999999999999999999999988887433 3467889999999987763

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.38  E-value=0.021  Score=48.68  Aligned_cols=79  Identities=16%  Similarity=0.180  Sum_probs=54.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc-----------------cHHHHHHHHHhcCCceEeChhH-HHh
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD-----------------DIDKLKSYLKSLGADYVFTEEE-LRN   71 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~-----------------~~~~~~~~~~~lg~~~v~~~~~-~~~   71 (202)
                      .+++|+|+|+| +.|+.++..++..|++|+++-..+.                 -...+.+.++++|.+..++..- ..-
T Consensus       309 ~~kkVaIIG~G-paGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~  387 (639)
T PRK12809        309 RSEKVAVIGAG-PAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDI  387 (639)
T ss_pred             CCCEEEEECcC-HHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcC
Confidence            48999999999 9999999999999999877765542                 0112356677888877665321 011


Q ss_pred             -HHHhhCCCCCeEEEecCCCc
Q psy2961          72 -ISRDASIPKPKLALNCVGGN   91 (202)
Q Consensus        72 -~~~~~~~~~~d~vid~~g~~   91 (202)
                       +.+..  .++|.||.++|..
T Consensus       388 ~~~~l~--~~~DaV~latGa~  406 (639)
T PRK12809        388 TFSDLT--SEYDAVFIGVGTY  406 (639)
T ss_pred             CHHHHH--hcCCEEEEeCCCC
Confidence             22222  4689999999864

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.38  E-value=0.033  Score=42.25  Aligned_cols=75  Identities=13%  Similarity=0.077  Sum_probs=57.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVG   89 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~g   89 (202)
                      .|.+|+|.|-+.-+|.-+++++...|+.|+.+.+.-.                     +   +.+.+  ..+|++|.++|
T Consensus       158 ~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~---------------------~---l~~~~--~~ADIvi~avG  211 (285)
T PRK10792        158 YGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTK---------------------N---LRHHV--RNADLLVVAVG  211 (285)
T ss_pred             CCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCC---------------------C---HHHHH--hhCCEEEEcCC
Confidence            5899999999988999999999999998766543221                     1   11111  56799999999


Q ss_pred             CchHHHHHHhcccCcEEEEEec
Q psy2961          90 GNSATNLLRTLVSKGVMVTYGG  111 (202)
Q Consensus        90 ~~~~~~~~~~l~~~G~~v~~g~  111 (202)
                      .+.+.. -++++++..++.+|.
T Consensus       212 ~p~~v~-~~~vk~gavVIDvGi  232 (285)
T PRK10792        212 KPGFIP-GEWIKPGAIVIDVGI  232 (285)
T ss_pred             Cccccc-HHHcCCCcEEEEccc
Confidence            888643 378899999999983

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=96.36  E-value=0.05  Score=41.94  Aligned_cols=90  Identities=18%  Similarity=0.277  Sum_probs=56.1

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--cEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecCC
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGL--KTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVG   89 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~--~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~g   89 (202)
                      .+|.|+|+| .+|...++.++..|.  +|++..++++    +.+.+++.|...... .+..+   ..  .+.|+||.|+.
T Consensus         7 ~~I~IIG~G-~mG~sla~~l~~~g~~~~V~~~dr~~~----~~~~a~~~g~~~~~~-~~~~~---~~--~~aDvViiavp   75 (307)
T PRK07502          7 DRVALIGIG-LIGSSLARAIRRLGLAGEIVGADRSAE----TRARARELGLGDRVT-TSAAE---AV--KGADLVILCVP   75 (307)
T ss_pred             cEEEEEeeC-HHHHHHHHHHHhcCCCcEEEEEECCHH----HHHHHHhCCCCceec-CCHHH---Hh--cCCCEEEECCC
Confidence            679999988 999999998888885  5665555543    456666676532111 11111   11  45789998887


Q ss_pred             CchHHH----HHHhcccCcEEEEEecc
Q psy2961          90 GNSATN----LLRTLVSKGVMVTYGGM  112 (202)
Q Consensus        90 ~~~~~~----~~~~l~~~G~~v~~g~~  112 (202)
                      ......    +...++++..++.++..
T Consensus        76 ~~~~~~v~~~l~~~l~~~~iv~dvgs~  102 (307)
T PRK07502         76 VGASGAVAAEIAPHLKPGAIVTDVGSV  102 (307)
T ss_pred             HHHHHHHHHHHHhhCCCCCEEEeCccc
Confidence            654332    33456677766666643

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=96.35  E-value=0.0047  Score=46.87  Aligned_cols=67  Identities=15%  Similarity=0.093  Sum_probs=44.0

Q ss_pred             EEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecCCC
Q psy2961          14 VIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGG   90 (202)
Q Consensus        14 VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~g~   90 (202)
                      |||+|++|.+|..+++.+...|.+|+++.++++.    .+.....+   +.+... ....+..  .++|+||.+++.
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~----~~~~~~~~---~~~~~~-~~~~~~~--~~~D~Vvh~a~~   67 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPA----GANTKWEG---YKPWAP-LAESEAL--EGADAVINLAGE   67 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCC----CCccccee---eecccc-cchhhhc--CCCCEEEECCCC
Confidence            6899999999999999888899999999987763    11111111   111111 1122222  468999999974

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=96.33  E-value=0.051  Score=45.18  Aligned_cols=35  Identities=23%  Similarity=0.249  Sum_probs=31.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCc
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR   45 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~   45 (202)
                      .|.+|.|+|.| .+|...++.++.+|++|++..+..
T Consensus       139 ~gktvgIiG~G-~IG~~vA~~l~~fG~~V~~~d~~~  173 (526)
T PRK13581        139 YGKTLGIIGLG-RIGSEVAKRAKAFGMKVIAYDPYI  173 (526)
T ss_pred             CCCEEEEECCC-HHHHHHHHHHHhCCCEEEEECCCC
Confidence            58899999999 899999999999999988877543

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.31  E-value=0.045  Score=39.83  Aligned_cols=35  Identities=20%  Similarity=0.206  Sum_probs=29.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCc
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR   45 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~   45 (202)
                      ...+|+|.|+| ++|..+++.+...|...+.+++.+
T Consensus        27 ~~~~V~ViG~G-glGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         27 KKAKVGIAGAG-GLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             hCCCEEEECcC-HHHHHHHHHHHHcCCCeEEEEeCC
Confidence            35689999998 999999999999999877777665

>PRK14968 putative methyltransferase; Provisional

Probab=96.30  E-value=0.038  Score=39.06  Aligned_cols=38  Identities=26%  Similarity=0.323  Sum_probs=29.4

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCccc
Q psy2961           7 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD   47 (202)
Q Consensus         7 ~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~   47 (202)
                      ...++++||..|+|  .|..+..+++. +.+++++..+++.
T Consensus        20 ~~~~~~~vLd~G~G--~G~~~~~l~~~-~~~v~~~D~s~~~   57 (188)
T PRK14968         20 VDKKGDRVLEVGTG--SGIVAIVAAKN-GKKVVGVDINPYA   57 (188)
T ss_pred             hccCCCEEEEEccc--cCHHHHHHHhh-cceEEEEECCHHH
Confidence            34688899999986  47788888877 8888888777653

>PLN02256 arogenate dehydrogenase

Probab=96.29  E-value=0.088  Score=40.57  Aligned_cols=90  Identities=18%  Similarity=0.197  Sum_probs=52.5

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCV   88 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~   88 (202)
                      -.+.+|.|.|.| .+|...+..++..|.+++++.+++.     .+.+.++|....   .+..++   .. ...|+||-|+
T Consensus        34 ~~~~kI~IIG~G-~mG~slA~~L~~~G~~V~~~d~~~~-----~~~a~~~gv~~~---~~~~e~---~~-~~aDvVilav  100 (304)
T PLN02256         34 SRKLKIGIVGFG-NFGQFLAKTFVKQGHTVLATSRSDY-----SDIAAELGVSFF---RDPDDF---CE-EHPDVVLLCT  100 (304)
T ss_pred             CCCCEEEEEeeC-HHHHHHHHHHHhCCCEEEEEECccH-----HHHHHHcCCeee---CCHHHH---hh-CCCCEEEEec
Confidence            355689999987 8999988888888888887766542     244455665321   111111   00 2356777666


Q ss_pred             CCchHHHHHH-----hcccCcEEEEEec
Q psy2961          89 GGNSATNLLR-----TLVSKGVMVTYGG  111 (202)
Q Consensus        89 g~~~~~~~~~-----~l~~~G~~v~~g~  111 (202)
                      ........+.     .++++..++.++.
T Consensus       101 p~~~~~~vl~~l~~~~l~~~~iviDv~S  128 (304)
T PLN02256        101 SILSTEAVLRSLPLQRLKRSTLFVDVLS  128 (304)
T ss_pred             CHHHHHHHHHhhhhhccCCCCEEEecCC
Confidence            6544333222     2345555556554

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.26  E-value=0.035  Score=45.57  Aligned_cols=74  Identities=18%  Similarity=0.186  Sum_probs=49.4

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccH-HHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEec
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDI-DKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNC   87 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~-~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~   87 (202)
                      -.+.+|+|.|+| ++|+.++..++..|++|+++...+... ....+.+++.|.........    .   ...++|+||-+
T Consensus        14 ~~~~~v~viG~G-~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~----~---~~~~~D~Vv~s   85 (480)
T PRK01438         14 WQGLRVVVAGLG-VSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGP----T---LPEDTDLVVTS   85 (480)
T ss_pred             cCCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCc----c---ccCCCCEEEEC
Confidence            357799999998 899999999999999987776554321 11235566777765543211    0   01357888887


Q ss_pred             CCC
Q psy2961          88 VGG   90 (202)
Q Consensus        88 ~g~   90 (202)
                      .|-
T Consensus        86 ~Gi   88 (480)
T PRK01438         86 PGW   88 (480)
T ss_pred             CCc
Confidence            774

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=96.26  E-value=0.18  Score=36.64  Aligned_cols=96  Identities=10%  Similarity=0.180  Sum_probs=63.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVG   89 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~g   89 (202)
                      .|..|+|.|+| .+|.-=+.+....|+++++++..-.  ++-..+..+.+...+ . ..+..  +..  .++++||-+++
T Consensus        11 ~~k~VlvvGgG-~va~rKa~~ll~~ga~v~Vvs~~~~--~el~~~~~~~~i~~~-~-~~~~~--~~~--~~~~lviaAt~   81 (210)
T COG1648          11 EGKKVLVVGGG-SVALRKARLLLKAGADVTVVSPEFE--PELKALIEEGKIKWI-E-REFDA--EDL--DDAFLVIAATD   81 (210)
T ss_pred             CCCEEEEECCC-HHHHHHHHHHHhcCCEEEEEcCCcc--HHHHHHHHhcCcchh-h-cccCh--hhh--cCceEEEEeCC
Confidence            57899999999 8999999999999999888875542  222233333332211 1 11111  111  34899999999


Q ss_pred             CchHHH-HHHhcccCcEEEEEeccCC
Q psy2961          90 GNSATN-LLRTLVSKGVMVTYGGMSR  114 (202)
Q Consensus        90 ~~~~~~-~~~~l~~~G~~v~~g~~~~  114 (202)
                      .+...+ .....+..+.+|.+...+.
T Consensus        82 d~~ln~~i~~~a~~~~i~vNv~D~p~  107 (210)
T COG1648          82 DEELNERIAKAARERRILVNVVDDPE  107 (210)
T ss_pred             CHHHHHHHHHHHHHhCCceeccCCcc
Confidence            988876 6677778888888775544

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=96.26  E-value=0.013  Score=44.96  Aligned_cols=70  Identities=14%  Similarity=0.254  Sum_probs=41.6

Q ss_pred             EEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcccHHHHHHHHHhcCCceEeC---hhHHHh-HHHhhCCCCCeEEEecC
Q psy2961          14 VIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFT---EEELRN-ISRDASIPKPKLALNCV   88 (202)
Q Consensus        14 VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~v~~---~~~~~~-~~~~~~~~~~d~vid~~   88 (202)
                      |||+|++|.+|..+++.+...|. .|+++.++...     ..+.+++...+.+   ..+..+ +.+. ...++|+||.++
T Consensus         1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~~~~~-----~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~D~vvh~A   74 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDG-----HKFLNLADLVIADYIDKEDFLDRLEKG-AFGKIEAIFHQG   74 (314)
T ss_pred             CEEeCCcchhhHHHHHHHHHcCCceEEEEecCCCc-----hhhhhhhheeeeccCcchhHHHHHHhh-ccCCCCEEEECc
Confidence            68999999999999999999998 56655444321     1222222222222   122222 2221 114799999988


Q ss_pred             C
Q psy2961          89 G   89 (202)
Q Consensus        89 g   89 (202)
                      +
T Consensus        75 ~   75 (314)
T TIGR02197        75 A   75 (314)
T ss_pred             c
Confidence            6

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.25  E-value=0.041  Score=41.75  Aligned_cols=75  Identities=16%  Similarity=0.133  Sum_probs=56.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVG   89 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~g   89 (202)
                      .|.+|+|.|.+..+|.-++.++...|+.|.... +..                    .++.+   .+  ..+|+|+-++|
T Consensus       156 ~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~h-s~t--------------------~~l~~---~~--~~ADIvV~AvG  209 (285)
T PRK14191        156 KGKDVVIIGASNIVGKPLAMLMLNAGASVSVCH-ILT--------------------KDLSF---YT--QNADIVCVGVG  209 (285)
T ss_pred             CCCEEEEECCCchhHHHHHHHHHHCCCEEEEEe-CCc--------------------HHHHH---HH--HhCCEEEEecC
Confidence            699999999999999999999999999876643 221                    11111   11  45799999999


Q ss_pred             CchHHHHHHhcccCcEEEEEec
Q psy2961          90 GNSATNLLRTLVSKGVMVTYGG  111 (202)
Q Consensus        90 ~~~~~~~~~~l~~~G~~v~~g~  111 (202)
                      .+.+.. -+++++|..++.+|.
T Consensus       210 ~p~~i~-~~~vk~GavVIDvGi  230 (285)
T PRK14191        210 KPDLIK-ASMVKKGAVVVDIGI  230 (285)
T ss_pred             CCCcCC-HHHcCCCcEEEEeec
Confidence            887643 457799999999984

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=96.24  E-value=0.09  Score=40.04  Aligned_cols=89  Identities=10%  Similarity=0.131  Sum_probs=57.0

Q ss_pred             EEEEeCCCcHHHHHH-HHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecCCCc
Q psy2961          13 VVIQNGANSACGQNV-IQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGN   91 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~-i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~g~~   91 (202)
                      +|.|.|+| .+|... ..+.+..+.++.++++.+.+. +.++..+++|.....+  +.+.+.   ...++|+|+++++..
T Consensus         3 rVAIIG~G-~IG~~h~~~ll~~~~~elvaV~d~d~es-~~la~A~~~Gi~~~~~--~~e~ll---~~~dIDaV~iaTp~~   75 (285)
T TIGR03215         3 KVAIIGSG-NIGTDLMYKLLRSEHLEMVAMVGIDPES-DGLARARELGVKTSAE--GVDGLL---ANPDIDIVFDATSAK   75 (285)
T ss_pred             EEEEEeCc-HHHHHHHHHHHhCCCcEEEEEEeCCccc-HHHHHHHHCCCCEEEC--CHHHHh---cCCCCCEEEECCCcH
Confidence            68899985 899854 566666678899888765431 1245677788776542  222211   125799999999987


Q ss_pred             hHHHH-HHhcccCcEEEE
Q psy2961          92 SATNL-LRTLVSKGVMVT  108 (202)
Q Consensus        92 ~~~~~-~~~l~~~G~~v~  108 (202)
                      .-... ..++..|-+++.
T Consensus        76 ~H~e~a~~al~aGk~VId   93 (285)
T TIGR03215        76 AHARHARLLAELGKIVID   93 (285)
T ss_pred             HHHHHHHHHHHcCCEEEE
Confidence            65554 445555444444

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=96.23  E-value=0.12  Score=33.53  Aligned_cols=91  Identities=15%  Similarity=0.231  Sum_probs=58.8

Q ss_pred             EEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeC-hhHHHhHHHhhCCCCCeEEEecCCCch
Q psy2961          14 VIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT-EEELRNISRDASIPKPKLALNCVGGNS   92 (202)
Q Consensus        14 VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~-~~~~~~~~~~~~~~~~d~vid~~g~~~   92 (202)
                      |+|+|.+ .+|..+++.++..+.+++.+...++    +.+.+++.|...+.. ..+...+++. +-..++.++-+++.+.
T Consensus         1 vvI~G~g-~~~~~i~~~L~~~~~~vvvid~d~~----~~~~~~~~~~~~i~gd~~~~~~l~~a-~i~~a~~vv~~~~~d~   74 (116)
T PF02254_consen    1 VVIIGYG-RIGREIAEQLKEGGIDVVVIDRDPE----RVEELREEGVEVIYGDATDPEVLERA-GIEKADAVVILTDDDE   74 (116)
T ss_dssp             EEEES-S-HHHHHHHHHHHHTTSEEEEEESSHH----HHHHHHHTTSEEEES-TTSHHHHHHT-TGGCESEEEEESSSHH
T ss_pred             eEEEcCC-HHHHHHHHHHHhCCCEEEEEECCcH----HHHHHHhcccccccccchhhhHHhhc-CccccCEEEEccCCHH
Confidence            6788998 8999999999996667777776665    578888888665552 2222212222 2256788888887765


Q ss_pred             HHH----HHHhcccCcEEEEEe
Q psy2961          93 ATN----LLRTLVSKGVMVTYG  110 (202)
Q Consensus        93 ~~~----~~~~l~~~G~~v~~g  110 (202)
                      ...    .++-+.+..+++...
T Consensus        75 ~n~~~~~~~r~~~~~~~ii~~~   96 (116)
T PF02254_consen   75 ENLLIALLARELNPDIRIIARV   96 (116)
T ss_dssp             HHHHHHHHHHHHTTTSEEEEEE
T ss_pred             HHHHHHHHHHHHCCCCeEEEEE
Confidence            442    234455666776654

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK09620 hypothetical protein; Provisional

Probab=96.23  E-value=0.023  Score=41.90  Aligned_cols=81  Identities=11%  Similarity=0.078  Sum_probs=52.3

Q ss_pred             CCCEEEEeCCC----------------cHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHH-HhcCCceEeChhHHHh-
Q psy2961          10 PGDVVIQNGAN----------------SACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGADYVFTEEELRN-   71 (202)
Q Consensus        10 ~g~~VlI~g~~----------------~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~v~~~~~~~~-   71 (202)
                      .|.+|||++|+                |-+|..+++.+...|++|+.+.+....   ..... .......+....+..+ 
T Consensus         2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~~~---~~~~~~~~~~~~~V~s~~d~~~~   78 (229)
T PRK09620          2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYFAE---KPNDINNQLELHPFEGIIDLQDK   78 (229)
T ss_pred             CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCCcC---CCcccCCceeEEEEecHHHHHHH
Confidence            47889999886                799999999999999999988754321   00101 0111122223345555 


Q ss_pred             HHHhhCCCCCeEEEecCCCchH
Q psy2961          72 ISRDASIPKPKLALNCVGGNSA   93 (202)
Q Consensus        72 ~~~~~~~~~~d~vid~~g~~~~   93 (202)
                      +.+.....++|+||.++.-..+
T Consensus        79 l~~~~~~~~~D~VIH~AAvsD~  100 (229)
T PRK09620         79 MKSIITHEKVDAVIMAAAGSDW  100 (229)
T ss_pred             HHHHhcccCCCEEEECccccce
Confidence            6666554578999998876554

>PRK07340 ornithine cyclodeaminase; Validated

Probab=96.23  E-value=0.054  Score=41.76  Aligned_cols=106  Identities=6%  Similarity=0.056  Sum_probs=64.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHH-HCCCcEEEEecCcccHHHHHHHHHhc---CCceEeChhHHHhHHHhhCCCCCeEEE
Q psy2961          10 PGDVVIQNGANSACGQNVIQIAR-HWGLKTINIVRNRDDIDKLKSYLKSL---GADYVFTEEELRNISRDASIPKPKLAL   85 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~-~~g~~vi~~~~~~~~~~~~~~~~~~l---g~~~v~~~~~~~~~~~~~~~~~~d~vi   85 (202)
                      ...+++|+|+| ..|.+.++.+. ..+.+.+.++++....  ...++.++   +....  ..+..+   ..  .+.|+|+
T Consensus       124 ~~~~v~IiGaG-~qa~~~~~al~~~~~~~~v~v~~r~~~~--a~~~a~~~~~~~~~~~--~~~~~~---av--~~aDiVi  193 (304)
T PRK07340        124 PPGDLLLIGTG-VQARAHLEAFAAGLPVRRVWVRGRTAAS--AAAFCAHARALGPTAE--PLDGEA---IP--EAVDLVV  193 (304)
T ss_pred             CCCEEEEECCc-HHHHHHHHHHHHhCCCCEEEEEcCCHHH--HHHHHHHHHhcCCeeE--ECCHHH---Hh--hcCCEEE
Confidence            45789999998 88988777765 4677666666554321  22333333   22222  122222   22  4789999


Q ss_pred             ecCCCchH-HHHHHhcccCcEEEEEeccCCCCcCCCcccccccC
Q psy2961          86 NCVGGNSA-TNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKD  128 (202)
Q Consensus        86 d~~g~~~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~  128 (202)
                      .|+.+... ...  .++||-++..+|........++. .++.+.
T Consensus       194 taT~s~~Pl~~~--~~~~g~hi~~iGs~~p~~~El~~-~~~~~a  234 (304)
T PRK07340        194 TATTSRTPVYPE--AARAGRLVVAVGAFTPDMAELAP-RTVRGS  234 (304)
T ss_pred             EccCCCCceeCc--cCCCCCEEEecCCCCCCcccCCH-HHHhhC
Confidence            98876542 223  47999999999976655445554 344443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	202
2vcy_A	344	Crystal Structure Of 2-Enoyl Thioester Reductase Of		2e-50
1zsy_A	357	The Structure Of Human Mitochondrial 2-Enoyl Thioes		3e-50
1n9g_B	386	Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr		7e-30
1gu7_A	364	Enoyl Thioester Reductase From Candida Tropicalis L		8e-30
1gyr_A	364	Mutant Form Of Enoyl Thioester Reductase From Candi		8e-30
1h0k_A	364	Enoyl Thioester Reductase 2 Length = 364		1e-29
1n9g_A	386	Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr		1e-29
1v3t_A	333	Crystal Structure Of Leukotriene B4 12- Hydroxydehy		6e-07
3pi7_A	349	Crystal Structure Of A Putative Nadph:quinone Reduc		6e-06
2y05_A	328	Crystal Structure Of Human Leukotriene B4 12-Hydrox		4e-05
1zsv_A	349	Crystal Structure Of Human Nadp-Dependent Leukotrie		4e-05

>pdb|2VCY|A Chain A, Crystal Structure Of 2-Enoyl Thioester Reductase Of Human Fas Ii Length = 344

Iteration: 1
 Score =  194 bits (494), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 98/191 (51%), Positives = 131/191 (68%), Gaps = 8/191 (4%)
Query: 1   MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
           ML D+  L PGD VIQN +NS  GQ VIQIA   GL+TIN+VR+R DI KL   LKSLGA
Sbjct: 145 MLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGA 204
Query: 61  DYVFTEEELR-----NISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSRE 115
           ++V TEEELR     N  +D  +P+P+LALNCVGG S+T LLR L   G MVTYGGM+++
Sbjct: 205 EHVITEEELRRPEMKNFFKD--MPQPRLALNCVGGKSSTELLRQLARGGTMVTYGGMAKQ 262
Query: 116 PVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTL 175
           PV    S  IFKD+ LRG W+++W+K++    + K ++  L +++R G+L APA   V L
Sbjct: 263 PVVASVSLLIFKDLKLRGFWLSQWKKDHSPD-QFKELILTLCDLIRRGQLTAPACSQVPL 321
Query: 176 KNFQEALMNTM 186
           +++Q AL  +M
Sbjct: 322 QDYQSALEASM 332

>pdb|1ZSY|A Chain A, The Structure Of Human Mitochondrial 2-Enoyl Thioester Reductase (Cgi- 63) Length = 357

Iteration: 1
 Score =  194 bits (493), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 98/191 (51%), Positives = 131/191 (68%), Gaps = 8/191 (4%)
Query: 1   MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
           ML D+  L PGD VIQN +NS  GQ VIQIA   GL+TIN+VR+R DI KL   LKSLGA
Sbjct: 158 MLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGA 217
Query: 61  DYVFTEEELR-----NISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSRE 115
           ++V TEEELR     N  +D  +P+P+LALNCVGG S+T LLR L   G MVTYGGM+++
Sbjct: 218 EHVITEEELRRPEMKNFFKD--MPQPRLALNCVGGKSSTELLRQLARGGTMVTYGGMAKQ 275
Query: 116 PVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTL 175
           PV    S  IFKD+ LRG W+++W+K++    + K ++  L +++R G+L APA   V L
Sbjct: 276 PVVASVSLLIFKDLKLRGFWLSQWKKDHSPD-QFKELILTLCDLIRRGQLTAPACSQVPL 334
Query: 176 KNFQEALMNTM 186
           +++Q AL  +M
Sbjct: 335 QDYQSALEASM 345

>pdb|1N9G|B Chain B, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p Heterodimer From Candida Tropicalis Length = 386

Iteration: 1
 Score =  126 bits (317), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 75/176 (42%), Positives = 105/176 (59%), Gaps = 15/176 (8%)
Query: 1   MLKDYNSLSPG-DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG 59
           ML  Y  L+PG D  IQNG  SA G+   QI +     +I+++R+R ++D++ + LK LG
Sbjct: 179 MLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELG 238
Query: 60  ADYVFTEEELRNISRD----------ASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTY 109
           A  V TE++  N SR+           S  + KLALNCVGG S+T + R L + G+M+TY
Sbjct: 239 ATQVITEDQ--NNSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTY 296
Query: 110 GGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKL 165
           GGMS +PV IPTS +IFK+ T  G W+T   K NKE   + S +N++      GKL
Sbjct: 297 GGMSFQPVTIPTSLYIFKNFTSAGFWVTELLKNNKEL--KTSTLNQIIAWYEEGKL 350

>pdb|1GU7|A Chain A, Enoyl Thioester Reductase From Candida Tropicalis Length = 364

Iteration: 1
 Score =  126 bits (317), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 75/176 (42%), Positives = 105/176 (59%), Gaps = 15/176 (8%)
Query: 1   MLKDYNSLSPG-DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG 59
           ML  Y  L+PG D  IQNG  SA G+   QI +     +I+++R+R ++D++ + LK LG
Sbjct: 157 MLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELG 216
Query: 60  ADYVFTEEELRNISRD----------ASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTY 109
           A  V TE++  N SR+           S  + KLALNCVGG S+T + R L + G+M+TY
Sbjct: 217 ATQVITEDQ--NNSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTY 274
Query: 110 GGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKL 165
           GGMS +PV IPTS +IFK+ T  G W+T   K NKE   + S +N++      GKL
Sbjct: 275 GGMSFQPVTIPTSLYIFKNFTSAGFWVTELLKNNKEL--KTSTLNQIIAWYEEGKL 328

>pdb|1GYR|A Chain A, Mutant Form Of Enoyl Thioester Reductase From Candida Tropicalis Length = 364

Iteration: 1
 Score =  126 bits (316), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 75/176 (42%), Positives = 105/176 (59%), Gaps = 15/176 (8%)
Query: 1   MLKDYNSLSPG-DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG 59
           ML  Y  L+PG D  IQNG  SA G+   QI +     +I+++R+R ++D++ + LK LG
Sbjct: 157 MLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELG 216
Query: 60  ADYVFTEEELRNISRD----------ASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTY 109
           A  V TE++  N SR+           S  + KLALNCVGG S+T + R L + G+M+TY
Sbjct: 217 ATQVITEDQ--NNSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTY 274
Query: 110 GGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKL 165
           GGMS +PV IPTS +IFK+ T  G W+T   K NKE   + S +N++      GKL
Sbjct: 275 GGMSFQPVTIPTSLYIFKNFTSAGFWVTELLKNNKEL--KTSTLNQIIAWYEEGKL 328

>pdb|1H0K|A Chain A, Enoyl Thioester Reductase 2 Length = 364

Iteration: 1
 Score =  125 bits (315), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 72/174 (41%), Positives = 103/174 (59%), Gaps = 11/174 (6%)
Query: 1   MLKDYNSLSPG-DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG 59
           ML  Y  L+PG D  IQNG  SA G+   QI +     +I+++R+R ++D++ + LK LG
Sbjct: 157 MLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELG 216
Query: 60  ADYVFTEEELRNISRDASIPK--------PKLALNCVGGNSATNLLRTLVSKGVMVTYGG 111
           A  V TE++  +     +I +         KLALNCVGG S+T + R L + G+M+TYGG
Sbjct: 217 ATQVITEDQNNSKEFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTYGG 276
Query: 112 MSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKL 165
           MS +PV IPTS +IFK+ T  G W+T   K NKE   + S +N++      GKL
Sbjct: 277 MSFQPVTIPTSLYIFKNFTSAGFWVTELLKNNKEL--KTSTLNQIIAWYEEGKL 328

>pdb|1N9G|A Chain A, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p Heterodimer From Candida Tropicalis Length = 386

Iteration: 1
 Score =  125 bits (315), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 72/174 (41%), Positives = 103/174 (59%), Gaps = 11/174 (6%)
Query: 1   MLKDYNSLSPG-DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG 59
           ML  Y  L+PG D  IQNG  SA G+   QI +     +I+++R+R ++D++ + LK LG
Sbjct: 179 MLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELG 238
Query: 60  ADYVFTEEELRNISRDASIPK--------PKLALNCVGGNSATNLLRTLVSKGVMVTYGG 111
           A  V TE++  +     +I +         KLALNCVGG S+T + R L + G+M+TYGG
Sbjct: 239 ATQVITEDQNNSKEFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTYGG 298
Query: 112 MSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKL 165
           MS +PV IPTS +IFK+ T  G W+T   K NKE   + S +N++      GKL
Sbjct: 299 MSFQPVTIPTSLYIFKNFTSAGFWVTELLKNNKEL--KTSTLNQIIAWYEEGKL 350

>pdb|1V3T|A Chain A, Crystal Structure Of Leukotriene B4 12- Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase Length = 333

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 77/193 (39%), Gaps = 34/193 (17%)
Query: 11  GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT----- 65
           G+ V+ + A  A G  V QIA+  G K +    + + I    +YLK +G D  F      
Sbjct: 146 GETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKI----AYLKQIGFDAAFNYKTVN 201
Query: 66  --EEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSK----------GVMVTYGGMS 113
             EE L+  S D          +C   N     L T++S+          G +  Y  M 
Sbjct: 202 SLEEALKKASPDG--------YDCYFDNVGGEFLNTVLSQMKDFGKIAICGAISVYNRMD 253
Query: 114 REPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFV 173
           + P      + I+K + + G  + RWQ + +E A R     +L + +  GK+    H   
Sbjct: 254 QLPPGPSPESIIYKQLRIEGFIVYRWQGDVREKALR-----DLMKWVLEGKIQYHEHVTK 308
Query: 174 TLKNFQEALMNTM 186
             +N   A +  +
Sbjct: 309 GFENMPAAFIEML 321

>pdb|3PI7|A Chain A, Crystal Structure Of A Putative Nadph:quinone Reductase (Mll3093) From Mesorhizobium Loti At 1.71 A Resolution Length = 349

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 25/144 (17%)
Query: 14  VIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE----- 68
           V   GA+  C + +I +A+  G + I  VR  + I    + LK +GA +V  E+      
Sbjct: 169 VXTAGASQLC-KLIIGLAKEEGFRPIVTVRRDEQI----ALLKDIGAAHVLNEKAPDFEA 223
Query: 69  -LRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMS------REPVQIPT 121
            LR + +     +P++ L+ V G  A+ +      +   + YG +       REP Q+  
Sbjct: 224 TLREVXKAE---QPRIFLDAVTGPLASAIFNAXPKRARWIIYGRLDPDATVIREPGQL-- 278
Query: 122 SAFIFKDITLRGHWMTRWQKENKE 145
              IF+   + G W++ W ++ KE
Sbjct: 279 ---IFQHKHIEGFWLSEWXRQFKE 299

>pdb|2Y05|A Chain A, Crystal Structure Of Human Leukotriene B4 12-Hydroxydehydrogenase In Complex With Nadp And Raloxifene Length = 328

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 78/185 (42%), Gaps = 18/185 (9%)
Query: 11  GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TEE 67
           G+ V+ N A  A G  V QIA+  G K +  V + + +    +YL+ LG D VF   T E
Sbjct: 141 GETVMVNAAAGAVGSVVGQIAKLKGCKVVGAVGSDEKV----AYLQKLGFDVVFNYKTVE 196
Query: 68  ELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMS------REPVQIPT 121
            L    + AS        + VGG  +  ++  +   G +   G +S        P   P 
Sbjct: 197 SLEETLKKASPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGAISTYNRTGPLPPGPPP 256
Query: 122 SAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEA 181
              I++++ +    + RWQ + ++ A     + +L + +  GK+    +     +N   A
Sbjct: 257 EIVIYQELRMEAFVVYRWQGDARQKA-----LKDLLKWVLEGKIQYKEYIIEGFENMPAA 311
Query: 182 LMNTM 186
            M  +
Sbjct: 312 FMGML 316

>pdb|1ZSV|A Chain A, Crystal Structure Of Human Nadp-Dependent Leukotriene B4 12- Hydroxydehydrogenase Length = 349

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 78/185 (42%), Gaps = 18/185 (9%)
Query: 11  GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TEE 67
           G+ V+ N A  A G  V QIA+  G K +  V + + +    +YL+ LG D VF   T E
Sbjct: 162 GETVMVNAAAGAVGSVVGQIAKLKGCKVVGAVGSDEKV----AYLQKLGFDVVFNYKTVE 217
Query: 68  ELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMS------REPVQIPT 121
            L    + AS        + VGG  +  ++  +   G +   G +S        P   P 
Sbjct: 218 SLEETLKKASPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGAISTYNRTGPLPPGPPP 277
Query: 122 SAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEA 181
              I++++ +    + RWQ + ++ A     + +L + +  GK+    +     +N   A
Sbjct: 278 EIVIYQELRMEAFVVYRWQGDARQKA-----LKDLLKWVLEGKIQYKEYIIEGFENMPAA 332
Query: 182 LMNTM 186
            M  +
Sbjct: 333 FMGML 337

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	202
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	8e-67
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	2e-64
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	1e-38
3gms_A	340	Putative NADPH:quinone reductase; structural genom	5e-33
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	5e-20
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	3e-15
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	4e-13
4eye_A	342	Probable oxidoreductase; structural genomics, niai	2e-12
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	1e-11
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	3e-11
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	5e-11
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	9e-11
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	1e-10
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	2e-10
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	3e-10
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	3e-10
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	9e-10
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	1e-09
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	4e-09
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	1e-08
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	2e-08
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	2e-08
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	2e-08
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	2e-08
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	3e-08
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	7e-08
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	8e-08
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	1e-07
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	1e-07
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	3e-07
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	3e-07
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	5e-07
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	7e-07
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	8e-07
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	2e-06
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	2e-06
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	3e-06
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	7e-06
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	8e-06
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	1e-05
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	1e-05
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	1e-05
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	3e-05
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	4e-05
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	6e-05
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	8e-05
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	4e-04
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	5e-04
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	8e-04

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A Length = 357

 Score =  207 bits (530), Expect = 8e-67
 Identities = 98/196 (50%), Positives = 129/196 (65%), Gaps = 6/196 (3%)

Query: 1   MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
           ML D+  L PGD VIQN +NS  GQ VIQIA   GL+TIN+VR+R DI KL   LKSLGA
Sbjct: 158 MLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGA 217

Query: 61  DYVFTEEELRNISRDASI---PKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPV 117
           ++V TEEELR           P+P+LALNCVGG S+T LLR L   G MVTYGGM+++PV
Sbjct: 218 EHVITEEELRRPEMKNFFKDMPQPRLALNCVGGKSSTELLRQLARGGTMVTYGGMAKQPV 277

Query: 118 QIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKN 177
               S  IFKD+ LRG W+++W+K++    + K ++  L +++R G+L APA   V L++
Sbjct: 278 VASVSLLIFKDLKLRGFWLSQWKKDHS-PDQFKELILTLCDLIRRGQLTAPACSQVPLQD 336

Query: 178 FQEALMNTMS--IQGK 191
           +Q AL  +M   I  K
Sbjct: 337 YQSALEASMKPFISSK 352

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A Length = 364

 Score =  202 bits (515), Expect = 2e-64
 Identities = 76/210 (36%), Positives = 109/210 (51%), Gaps = 16/210 (7%)

Query: 1   MLKDYNSLSPG-DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG 59
           ML  Y  L+PG D  IQNG  SA G+   QI +     +I+++R+R ++D++ + LK LG
Sbjct: 157 MLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELG 216

Query: 60  ADYVFTEEELRNISRDASI--------PKPKLALNCVGGNSATNLLRTLVSKGVMVTYGG 111
           A  V TE++  +     +I         + KLALNCVGG S+T + R L + G+M+TYGG
Sbjct: 217 ATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTYGG 276

Query: 112 MSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHK 171
           MS +PV IPTS +IFK+ T  G W+T   K NKE   + S +N++      GKL      
Sbjct: 277 MSFQPVTIPTSLYIFKNFTSAGFWVTELLKNNKE--LKTSTLNQIIAWYEEGKLTDAKSI 334

Query: 172 FVTLKNFQEAL-----MNTMSIQGKSGVKY 196
                  +            S  GK  + Y
Sbjct: 335 ETLYDGTKPLHELYQDGVANSKDGKQLITY 364

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} Length = 349

 Score =  135 bits (341), Expect = 1e-38
 Identities = 36/189 (19%), Positives = 69/189 (36%), Gaps = 11/189 (5%)

Query: 8   LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--T 65
                  +     S   + +I +A+  G + I  VR  + I      LK +GA +V    
Sbjct: 162 QEGEKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIA----LLKDIGAAHVLNEK 217

Query: 66  EEELRNISRDASIPK-PKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQI-PTSA 123
             +     R+    + P++ L+ V G  A+ +   +  +   + YG +  +   I     
Sbjct: 218 APDFEATLREVMKAEQPRIFLDAVTGPLASAIFNAMPKRARWIIYGRLDPDATVIREPGQ 277

Query: 124 FIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEAL- 182
            IF+   + G W++ W ++ KE   R   + E  +    G+ +      V L      + 
Sbjct: 278 LIFQHKHIEGFWLSEWMRQFKE--RRGPAILEAQKRFSDGRWSTDVTAVVPLAEAIAWVP 335

Query: 183 MNTMSIQGK 191
                  GK
Sbjct: 336 AELTKPNGK 344

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} Length = 340

 Score =  119 bits (302), Expect = 5e-33
 Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 13/198 (6%)

Query: 1   MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
              +  +L   DV++ N   SA G    Q+++    + I + RN       +  L  LGA
Sbjct: 135 TCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNN---KHTE-ELLRLGA 190

Query: 61  DYVF--TEEELRNISRDASIPK-PKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPV 117
            YV   +   L     + +       A++ +GG     L  +L   G  +T G +S   V
Sbjct: 191 AYVIDTSTAPLYETVMELTNGIGADAAIDSIGGPDGNELAFSLRPNGHFLTIGLLSGIQV 250

Query: 118 QIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPA-HKFVTLK 176
                      +      +  W  E     + +     L  ++   +L     H    L 
Sbjct: 251 N-WAEIVTKAKVHANIFHLRHWNDEVSP-YKWQETFRHLIRLVENEQLRFMKVHSTYELA 308

Query: 177 NFQEA---LMNTMSIQGK 191
           + + A   + +    +GK
Sbjct: 309 DVKAAVDVVQSAEKTKGK 326

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} Length = 379

 Score = 85.8 bits (212), Expect = 5e-20
 Identities = 36/201 (17%), Positives = 69/201 (34%), Gaps = 29/201 (14%)

Query: 1   MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
           M++    L     ++   A S  GQ + QI    G+K +NIVR ++  D     LK+ GA
Sbjct: 163 MVETMR-LEGHSALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQEQADL----LKAQGA 217

Query: 61  DYV--FTEEELRNISRDASIPK-PKLALNCVGGNSATNLLRTLVSKGV------------ 105
            +V             +A +     +A +  GG      + T +   +            
Sbjct: 218 VHVCNAASPTFMQDLTEALVSTGATIAFDATGGGKLGGQILTCMEAALNKSAREYSRYGS 277

Query: 106 -----MVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMM 160
                +  YGG+   P +   +        + G  +  + +  K   ER + + +     
Sbjct: 278 TTHKQVYLYGGLDTSPTEFNRN--FGMAWGMGGWLLFPFLQ--KIGRERANALKQRVVAE 333

Query: 161 RTGKLAAPAHKFVTLKNFQEA 181
                A+   K ++L    + 
Sbjct: 334 LKTTFASHYSKEISLAEVLDL 354

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* Length = 371

 Score = 72.1 bits (177), Expect = 3e-15
 Identities = 34/207 (16%), Positives = 68/207 (32%), Gaps = 28/207 (13%)

Query: 7   SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIV--RNRDDIDKLKSYLKSLGADYVF 64
           + S    V+  G ++A     +Q+ R  G   I      N D         KS GA+ VF
Sbjct: 161 THSKPVYVLVYGGSTATATVTMQMLRLSGYIPIATCSPHNFD-------LAKSRGAEEVF 213

Query: 65  --TEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSK--GVMVTYGGMSREPVQIP 120
                 L    R  +    + AL+C+    +T      + +  G  V+            
Sbjct: 214 DYRAPNLAQTIRTYTKNNLRYALDCITNVESTTFCFAAIGRAGGHYVSLNPFPEHAATRK 273

Query: 121 TSAFIF--------KDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKF 172
                +        +  T    +     +E ++  E   +     +++  G+L     + 
Sbjct: 274 MVTTDWTLGPTIFGEGSTWPAPYGRPGSEEERQFGED--LWRIAGQLVEDGRLVHHPLRV 331

Query: 173 V--TLKNFQEALMNTMSIQGK-SGVKY 196
           V     + ++ +   +  +G+ SG K 
Sbjct: 332 VQGGFDHIKQGM--ELVRKGELSGEKL 356

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* Length = 347

 Score = 65.7 bits (161), Expect = 4e-13
 Identities = 33/194 (17%), Positives = 61/194 (31%), Gaps = 29/194 (14%)

Query: 8   LSPGDVVIQNGANSACGQNVIQIARH-WGLKTINIVRNRDDIDKLKSYLKSLGADYVF-- 64
           L P   ++  GA    G   +QIA+   G   I +    +    ++   K  GADYV   
Sbjct: 168 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREE---AVE-AAKRAGADYVINA 223

Query: 65  -TEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKG---VMVTYGGMSREPVQIP 120
             ++ L  I R          ++        ++    ++K    VMV   G+    +   
Sbjct: 224 SMQDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMV---GLFGADLHYH 280

Query: 121 TSAFIFKDITLRG-HWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQ 179
                  +I   G     +                 +  +   GK+     K + L+   
Sbjct: 281 APLITLSEIQFVGSLVGNQSD------------FLGIMRLAEAGKVKPMITKTMKLEEAN 328

Query: 180 EAL--MNTMSIQGK 191
           EA+  +      G+
Sbjct: 329 EAIDNLENFKAIGR 342

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} Length = 342

 Score = 63.8 bits (156), Expect = 2e-12
 Identities = 41/183 (22%), Positives = 78/183 (42%), Gaps = 9/183 (4%)

Query: 2   LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD 61
                 L  G+ V+  GA    G   IQIA+  G K I +V         + ++KS+GAD
Sbjct: 151 YARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTA---ATE-FVKSVGAD 206

Query: 62  YVF-TEEELRNISRDASIPK-PKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQI 119
            V   EE      R+A+      + ++ +GG +  + +RTL S+G ++  G  +     I
Sbjct: 207 IVLPLEEGWAKAVREATGGAGVDMVVDPIGGPAFDDAVRTLASEGRLLVVGFAAGGIPTI 266

Query: 120 PTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQ 179
             +  + ++ +L G     + + + +          L +++  G +  P    + L   +
Sbjct: 267 KVNRLLLRNASLIGVAWGEFLRTHADYLYE--TQAGLEKLVAEG-MRPPVSARIPLSEGR 323

Query: 180 EAL 182
           +AL
Sbjct: 324 QAL 326

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* Length = 362

 Score = 61.5 bits (150), Expect = 1e-11
 Identities = 43/204 (21%), Positives = 80/204 (39%), Gaps = 35/204 (17%)

Query: 2   LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD 61
           LK+   LS G  V+   A    GQ  +Q+++      I    +    +K   +LKSLG D
Sbjct: 155 LKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSD---EKSA-FLKSLGCD 210

Query: 62  YVF--TEEELRNISRDASIPKPK---LALNCVGGNSATNLLRTLVSKGVMVTYGGMS--- 113
                  E +  + +      P+   +    VGG      +  L +KG ++  G +S   
Sbjct: 211 RPINYKTEPVGTVLKQEY---PEGVDVVYESVGGAMFDLAVDALATKGRLIVIGFISGYQ 267

Query: 114 ----REPVQIPT--SAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKL-- 165
                 PV+  T  +  + K  +++G ++  +  + +        M+ L EM  +G L  
Sbjct: 268 TPTGLSPVKAGTLPAKLLKKSASVQGFFLNHYLSKYQA------AMSHLLEMCVSGDLVC 321

Query: 166 ------AAPAHKFVTLKNFQEALM 183
                  +P  +F  L++   A+ 
Sbjct: 322 EVDLGDLSPEGRFTGLESIFRAVN 345

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A Length = 447

 Score = 60.6 bits (147), Expect = 3e-11
 Identities = 32/203 (15%), Positives = 57/203 (28%), Gaps = 37/203 (18%)

Query: 1   MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
           +      +  GD+V+  GA+   G   IQ  ++ G   + +V +     K    +++LG 
Sbjct: 211 VSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSA---QKEA-AVRALGC 266

Query: 61  DYVF------TEEELRNISRDASIPKPKLA--------------LNCVGGNSATNLLRTL 100
           D V         +++ +  R       KLA                  G  +    +   
Sbjct: 267 DLVINRAELGITDDIADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTGRVTFGLSVIVA 326

Query: 101 VSKGVMVTYGGMSREPVQIPTSAFIFKDITLRG-HWMTRWQKENKESAERKSMMNELTEM 159
              G +VT G  S             K   + G H     +                  +
Sbjct: 327 RRGGTVVTCGSSSGYLHTFDNRYLWMKLKKIVGSHGANHEE------------QQATNRL 374

Query: 160 MRTGKLAAPAHKFVTLKNFQEAL 182
             +G +         L    EA 
Sbjct: 375 FESGAVVPAMSAVYPLAEAAEAC 397

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} Length = 315

 Score = 59.5 bits (145), Expect = 5e-11
 Identities = 22/181 (12%), Positives = 57/181 (31%), Gaps = 27/181 (14%)

Query: 8   LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--T 65
           L+    V+  G  +     + Q+  + G     +  +       ++     G  +++   
Sbjct: 140 LTKQREVLIVGFGAV-NNLLTQMLNNAGYVVDLVSASLS-----QALAAKRGVRHLYREP 193

Query: 66  EEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFI 125
            +  +     A         + V   +A  L+ +L + G ++         +  P     
Sbjct: 194 SQVTQKY--FA-------IFDAVNSQNAAALVPSLKANGHIICIQD----RIPAPIDPAF 240

Query: 126 FKDITLRGHWM-TRWQKENKESAERKSM---MNELTEMMRTGKLAAPAHKFVTLKNFQEA 181
            + I+   H +      +  +  + + +      L  ++  GK+   A      +   EA
Sbjct: 241 TRTISY--HEIALGALHDFGDRQDWQILMQQGEALLTLIAQGKMEIAAPDIFRFEQMIEA 298

Query: 182 L 182
           L
Sbjct: 299 L 299

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 Length = 351

 Score = 58.7 bits (143), Expect = 9e-11
 Identities = 36/183 (19%), Positives = 67/183 (36%), Gaps = 16/183 (8%)

Query: 8   LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--T 65
           +  G+ V+ +GA+   G    QIAR +GLK +         +  K  +   GA  VF   
Sbjct: 168 VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTE---EGQK-IVLQNGAHEVFNHR 223

Query: 66  EEELRNISRDASIPK-PKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAF 124
           E    +  +     K   + +  +   + +  L  L   G ++  G      ++I     
Sbjct: 224 EVNYIDKIKKYVGEKGIDIIIEMLANVNLSKDLSLLSHGGRVIVVGSRG--TIEINPRDT 281

Query: 125 IFKDITLRG-HWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALM 183
           + K+ ++ G    +  ++E ++ A        L   M  G L         L+   EA  
Sbjct: 282 MAKESSIIGVTLFSSTKEEFQQYAA------ALQAGMEIGWLKPVIGSQYPLEKVAEAHE 335

Query: 184 NTM 186
           N +
Sbjct: 336 NII 338

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} Length = 321

 Score = 58.4 bits (142), Expect = 1e-10
 Identities = 37/190 (19%), Positives = 64/190 (33%), Gaps = 30/190 (15%)

Query: 8   LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIV--RNRDDIDKLKSYLKSLGADYV-- 63
           +  GDVV+ +      G   IQ+A+  G   I     RN         +LK+LGA+    
Sbjct: 150 VKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKRNHA-------FLKALGAEQCIN 202

Query: 64  FTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSA 123
           + EE+                ++ VGG+     +  L   G +V+   +           
Sbjct: 203 YHEEDFLLAIST----PVDAVIDLVGGDVGIQSIDCLKETGCIVSVPTI---TAGRVIEV 255

Query: 124 FIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEA-- 181
              K     G            + E    ++ L +++   KL     +   L     A  
Sbjct: 256 AKQKHRRAFGLLKQF-------NIEE---LHYLGKLVSEDKLRIEISRIFQLSEAVTAHE 305

Query: 182 LMNTMSIQGK 191
           L+ T  ++GK
Sbjct: 306 LLETGHVRGK 315

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A Length = 456

 Score = 58.3 bits (141), Expect = 2e-10
 Identities = 32/216 (14%), Positives = 66/216 (30%), Gaps = 39/216 (18%)

Query: 3   KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY 62
           ++   +  GD V+  GA+   G    Q A   G   I +V +     K +   +++GA+ 
Sbjct: 221 RNGAGMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQ---KAE-ICRAMGAEA 276

Query: 63  VF--TEEELRNISRDASIPKPK------------------LALNCVGGNSATNLLRTLVS 102
           +     E  R    + +    +                  +     G  +    +     
Sbjct: 277 IIDRNAEGYRFWKDENTQDPKEWKRFGKRIRELTGGEDIDIVFEHPGRETFGASVFVTRK 336

Query: 103 KGVMVTYGGMSREPVQIPTSAFIFKDITLRG-HWMTRWQKENKESAERKSMMNELTEMMR 161
            G + T    S    +            + G H+    +              E   ++ 
Sbjct: 337 GGTITTCASTSGYMHEYDNRYLWMSLKRIIGSHFANYRE------------AWEANRLIA 384

Query: 162 TGKLAAPAHKFVTLKNFQEAL--MNTMSIQGKSGVK 195
            G++     K  +L++  +A   ++    QGK GV 
Sbjct: 385 KGRIHPTLSKVYSLEDTGQAAYDVHRNLHQGKVGVL 420

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} Length = 343

 Score = 57.2 bits (139), Expect = 3e-10
 Identities = 38/198 (19%), Positives = 65/198 (32%), Gaps = 29/198 (14%)

Query: 8   LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE 67
           +  G  V+  G     G   IQIA   G +     R  D       Y++ LGA  +    
Sbjct: 148 VQDGQTVLIQGGGGGVGHVAIQIALARGARVFATARGSD-----LEYVRDLGATPIDASR 202

Query: 68  ELRNISRDASIPKP-KLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIF 126
           E  + + + +  +   L  + +GG         +   G +V+  G     +    +   F
Sbjct: 203 EPEDYAAEHTAGQGFDLVYDTLGGPVLDASFSAVKRFGHVVSCLGWGTHKL----APLSF 258

Query: 127 KDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKL-------------AAPAHKFV 173
           K  T  G +       N+  A    M+ E   +++TGKL                A+  V
Sbjct: 259 KQATYSGVFTLHTLLANEGLAHFGEMLREADALVQTGKLAPRLDPRTFSIAEIGSAYDAV 318

Query: 174 TLKNFQEALMNTMSIQGK 191
                     +    +GK
Sbjct: 319 ------LGRNDVPRQRGK 330

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} Length = 349

 Score = 57.2 bits (139), Expect = 3e-10
 Identities = 27/198 (13%), Positives = 63/198 (31%), Gaps = 20/198 (10%)

Query: 1   MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
           ML +  +L  G  V+ + A    GQ V Q+       T+    +    +     +K    
Sbjct: 133 MLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTASTFKHE----AIKDSVT 188

Query: 61  DYVFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMS------- 113
                  +     +  S     + L+C+ G++    L  L   G  + YG  +       
Sbjct: 189 HLFDRNADYVQEVKRISAEGVDIVLDCLCGDNTGKGLSLLKPLGTYILYGSSNMVTGETK 248

Query: 114 ---------REPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGK 164
                     +  ++       ++  + G  +     +   +   + ++ +L  +    K
Sbjct: 249 SFFSFAKSWWQVEKVNPIKLYEENKVIAGFSLLNLLFKQGRAGLIRGVVEKLIGLYNQKK 308

Query: 165 LAAPAHKFVTLKNFQEAL 182
           +         L+  +EA+
Sbjct: 309 IKPVVDSLWALEEVKEAM 326

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* Length = 334

 Score = 56.1 bits (136), Expect = 9e-10
 Identities = 38/180 (21%), Positives = 71/180 (39%), Gaps = 16/180 (8%)

Query: 8   LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT-- 65
           +  GD V+   A    G  + Q+ +  G  TI +    +   KLK   K  GA+Y+    
Sbjct: 146 VKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDE---KLK-IAKEYGAEYLINAS 201

Query: 66  ----EEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPT 121
                 ++   +    +     + + VG ++    L  L  KGV V++G  S        
Sbjct: 202 KEDILRQVLKFTNGKGVD---ASFDSVGKDTFEISLAALKRKGVFVSFGNASGLIPPFSI 258

Query: 122 SAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEA 181
           +    K+ITL    +  +     +  E K   +E   ++ + KL    +K   L++++ A
Sbjct: 259 TRLSPKNITLVRPQLYGY---IADPEEWKYYSDEFFGLVNSKKLNIKIYKTYPLRDYRTA 315

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} Length = 343

 Score = 55.7 bits (135), Expect = 1e-09
 Identities = 38/186 (20%), Positives = 71/186 (38%), Gaps = 20/186 (10%)

Query: 1   MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
           M+ D   + PGD V+   A S      IQIA+ +G + I    +    DKL+   K+LGA
Sbjct: 157 MVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSE---DKLR-RAKALGA 212

Query: 61  DYVF--TEEELRNISRDASIPK-PKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPV 117
           D     T  +     R  +  K     ++  G      +++   + G +   G  S    
Sbjct: 213 DETVNYTHPDWPKEVRRLTGGKGADKVVDHTGALYFEGVIKATANGGRIAIAGASSGYEG 272

Query: 118 QIPTSAFIFKDITLRGHWM-TRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLK 176
            +P +   ++ +++ G  M ++            S +  +   +  GKL     + + L+
Sbjct: 273 TLPFAHVFYRQLSILGSTMASK------------SRLFPILRFVEEGKLKPVVGQVLPLE 320

Query: 177 NFQEAL 182
              E  
Sbjct: 321 AAAEGH 326

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D Length = 302

 Score = 54.1 bits (131), Expect = 4e-09
 Identities = 34/184 (18%), Positives = 58/184 (31%), Gaps = 29/184 (15%)

Query: 8   LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV--FT 65
             PG+ V+   A  A G   +Q+AR  GL+ +         +KL     +LGA+    + 
Sbjct: 123 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRP---EKLA-LPLALGAEEAATYA 178

Query: 66  EEELR-------NISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQ 118
           E   R       ++  +            V G      L  L   G +V  G    E   
Sbjct: 179 EVPERAKAWGGLDLVLE------------VRGKEVEESLGLLAHGGRLVYIGAAEGEVAP 226

Query: 119 IPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNF 178
           IP    + +++ + G W+           E    +  L   +   +L             
Sbjct: 227 IPPLRLMRRNLAVLGFWL-TPLLREGALVEE--ALGFLLPRL-GRELRPVVGPVFPFAEA 282

Query: 179 QEAL 182
           + A 
Sbjct: 283 EAAF 286

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} Length = 346

 Score = 52.6 bits (127), Expect = 1e-08
 Identities = 37/199 (18%), Positives = 66/199 (33%), Gaps = 26/199 (13%)

Query: 8   LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLK-SYLKSLGADYVF-- 64
                 VI  GA    G   IQ A   G K++  +    DI   K +  KS GA   F  
Sbjct: 158 GCENKNVIIIGA-GTIGLLAIQCAVALGAKSVTAI----DISSEKLALAKSFGAMQTFNS 212

Query: 65  TEEELRNISRDASIPK-PKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSA 123
           +E     +       +  +L L   G      L   +      +   G   + + + ++ 
Sbjct: 213 SEMSAPQMQSVLRELRFNQLILETAGVPQTVELAVEIAGPHAQLALVGTLHQDLHLTSAT 272

Query: 124 F---IFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVT----LK 176
           F   + K++T+ G WM      N  S          + ++   KL       +      +
Sbjct: 273 FGKILRKELTVIGSWM------NYSSPWPGQEWETASRLLTERKL--SLEPLIAHRGSFE 324

Query: 177 NFQEALMNTMSIQGKSGVK 195
           +F +A+ +    +     K
Sbjct: 325 SFAQAVRDIA--RNAMPGK 341

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} Length = 353

 Score = 52.2 bits (126), Expect = 2e-08
 Identities = 39/189 (20%), Positives = 76/189 (40%), Gaps = 10/189 (5%)

Query: 8   LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--T 65
           L+ G+ V+ +G  S  G   IQ+AR +G +      +     K +   + LGA       
Sbjct: 165 LTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGST---GKCE-ACERLGAKRGINYR 220

Query: 66  EEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMS-REPVQIPTSAF 124
            E+   + +  +     + L+ +G       + +L   G +     +      ++  S  
Sbjct: 221 SEDFAAVIKAETGQGVDIILDMIGAAYFERNIASLAKDGCLSIIAFLGGAVAEKVNLSPI 280

Query: 125 IFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEA--L 182
           + K +T+ G  M     E K  A R  +++E+  ++  G +A   HK    ++  +A  L
Sbjct: 281 MVKRLTVTGSTMRPRTAEEK-RAIRDDLLSEVWPLLEAGTVAPVIHKVFAFEDVADAHRL 339

Query: 183 MNTMSIQGK 191
           +   S  GK
Sbjct: 340 LEEGSHVGK 348

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* Length = 348

 Score = 51.8 bits (125), Expect = 2e-08
 Identities = 41/191 (21%), Positives = 70/191 (36%), Gaps = 23/191 (12%)

Query: 10  PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--TEE 67
            G  V+  GA    G   I +A+  G   + +    +  D  +   K +GADYV    EE
Sbjct: 167 SGKSVLITGA-GPLGLLGIAVAKASGAYPVIVS---EPSDFRRELAKKVGADYVINPFEE 222

Query: 68  ELRNISRDASIPK-PKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFI- 125
           ++     D +      + L   G   A       V+    V+  G+    V I  +  I 
Sbjct: 223 DVVKEVMDITDGNGVDVFLEFSGAPKALEQGLQAVTPAGRVSLLGLYPGKVTIDFNNLII 282

Query: 126 FKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPA---HKFVTLKNFQEAL 182
           FK +T+ G       +     +           ++++GKL       HK+     ++EA 
Sbjct: 283 FKALTIYGITGRHLWETWYTVS----------RLLQSGKLNLDPIITHKYKGFDKYEEAF 332

Query: 183 MNTMSIQGKSG 193
              +   GK+G
Sbjct: 333 --ELMRAGKTG 341

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* Length = 325

 Score = 51.8 bits (125), Expect = 2e-08
 Identities = 38/193 (19%), Positives = 77/193 (39%), Gaps = 27/193 (13%)

Query: 1   MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
           +L+    + PG++++ + A    G    Q A+  G K I  V +    +K   + K+LGA
Sbjct: 131 LLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSP---EKAA-HAKALGA 186

Query: 61  DYVFT------EEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSR 114
                       + +  ++     P   +  + VG ++    L ++  +G++V++G  S 
Sbjct: 187 WETIDYSHEDVAKRVLELTDGKKCP---VVYDGVGQDTWLTSLDSVAPRGLVVSFGNASG 243

Query: 115 EPVQIPTSAFIFKDI------TLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAP 168
               +       KD       TL  +               ++M +EL +M+ +GKL   
Sbjct: 244 PVSGVNLGILAQKDSVYVTRPTLGSYANNA--------QNLQTMADELFDMLASGKLKVD 295

Query: 169 AHKFVTLKNFQEA 181
             +   LK+  +A
Sbjct: 296 GIEQYALKDAAKA 308

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} Length = 363

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 39/202 (19%), Positives = 70/202 (34%), Gaps = 39/202 (19%)

Query: 8   LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLK-SYLKSLGADYVF-- 64
           +  GD V+  GA    G   +  A+  G   + I     DID+ +  + K +  + V   
Sbjct: 177 VRLGDPVLICGA-GPIGLITMLCAKAAGACPLVIT----DIDEGRLKFAKEICPEVVTHK 231

Query: 65  -----TEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQI 119
                 EE  + I       +P +AL C G  S+       V  G  V   G+ +  +QI
Sbjct: 232 VERLSAEESAKKIVESFGGIEPAVALECTGVESSIAAAIWAVKFGGKVFVIGVGKNEIQI 291

Query: 120 PTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNE---LTEMMRTGKLAAPAHKFVT-- 174
           P      +++ L+  +                  N       ++  G +     + VT  
Sbjct: 292 PFMRASVREVDLQFQYR---------------YCNTWPRAIRLVENGLV--DLTRLVTHR 334

Query: 175 --LKNFQEALMNTMSIQGKSGV 194
             L++  +A     +   K+G 
Sbjct: 335 FPLEDALKAF--ETASDPKTGA 354

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} Length = 333

 Score = 51.8 bits (125), Expect = 3e-08
 Identities = 33/182 (18%), Positives = 67/182 (36%), Gaps = 18/182 (9%)

Query: 8   LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT-- 65
           + PGD V+ + A    G  ++  ARH G   I  V      +K +   + LG  +     
Sbjct: 143 VKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTE---EKAE-TARKLGCHHTINYS 198

Query: 66  ----EEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMS--REPVQI 119
                E +R I+    +    +  + +G ++    L  L  +G+   YG  S   +P+++
Sbjct: 199 TQDFAEVVREITGGKGVD---VVYDSIGKDTLQKSLDCLRPRGMCAAYGHASGVADPIRV 255

Query: 120 PTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQ 179
                +   + +    +  +       +E       L + ++ G L +   K   L+   
Sbjct: 256 VEDLGVRGSLFITRPALWHY---MSNRSEIDEGSKCLFDAVKAGVLHSSVAKTFPLREAA 312

Query: 180 EA 181
            A
Sbjct: 313 AA 314

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} Length = 363

 Score = 50.3 bits (121), Expect = 7e-08
 Identities = 38/187 (20%), Positives = 60/187 (32%), Gaps = 23/187 (12%)

Query: 1   MLKDYNSLSPGD-VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG 59
            L +   L  GD VV+Q G         +QIA+  G + I    +R+   KL     +LG
Sbjct: 180 ALVEKGHLRAGDRVVVQ-GT-GGVALFGLQIAKATGAEVIVTSSSRE---KLD-RAFALG 233

Query: 60  ADYVF--TEEELRNISRDASIPK-PKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREP 116
           AD+     EE+        +  +     L   GG      L+ +   G +   G +    
Sbjct: 234 ADHGINRLEEDWVERVYALTGDRGADHILEIAGGAGLGQSLKAVAPDGRISVIGVLEGFE 293

Query: 117 VQIPTSAFIFKDITLRG-HWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTL 175
           V  P    + K   ++G     R              + +L   +    L          
Sbjct: 294 VSGPVGPLLLKSPVVQGISVGHR------------RALEDLVGAVDRLGLKPVIDMRYKF 341

Query: 176 KNFQEAL 182
               EAL
Sbjct: 342 TEVPEAL 348

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* Length = 345

 Score = 50.3 bits (121), Expect = 8e-08
 Identities = 36/185 (19%), Positives = 57/185 (30%), Gaps = 34/185 (18%)

Query: 8   LSPGD-VVIQNGANSACG---QNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV 63
           L PG   V+        G      IQI R      + I  + DD D+L    + +GAD  
Sbjct: 169 LGPGSTAVV-----IGVGGLGHVGIQILRAVSAARV-IAVDLDD-DRLA-LAREVGADAA 220

Query: 64  F--TEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKG---VMVTYGGMSREPVQ 118
                     I             + VG  S  +  + +V+      +V   G+      
Sbjct: 221 VKSGAGAADAIRELTGGQGATAVFDFVGAQSTIDTAQQVVAVDGHISVV---GIHAGAHA 277

Query: 119 IPTSAFIFKDITLRG-HWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKN 177
                 I    ++   +W TR +            + E+  + R G+L      F TL  
Sbjct: 278 KVGFFMIPFGASVVTPYWGTRSE------------LMEVVALARAGRLDIHTETF-TLDE 324

Query: 178 FQEAL 182
              A 
Sbjct: 325 GPAAY 329

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} Length = 404

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 33/199 (16%), Positives = 62/199 (31%), Gaps = 29/199 (14%)

Query: 8   LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGADYVF-- 64
           + PGD V+  G     G   + I +H G   + +     +  +++  L K LGAD+V   
Sbjct: 211 IRPGDNVVILGG-GPIGLAAVAILKHAGASKVILS----EPSEVRRNLAKELGADHVIDP 265

Query: 65  TEEELRNISRDASIPK-PKLALNCVGGNSATNL-LRTLVSKG----VMVTYGGMSREPVQ 118
           T+E       D +     KL L   G        +  ++ +       V     +   + 
Sbjct: 266 TKENFVEAVLDYTNGLGAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVARADAKIP 325

Query: 119 IPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPA--HKFVTLK 176
           +    F  +   + G                      +  +M +G            +++
Sbjct: 326 LTGEVFQVRRAQIVGSQ----------GHSGHGTFPRVISLMASGMDMTKIISKTV-SME 374

Query: 177 NFQEALMNTMSIQGKSGVK 195
              E +        KS VK
Sbjct: 375 EIPEYI--KRLQTDKSLVK 391

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* Length = 370

 Score = 49.5 bits (119), Expect = 1e-07
 Identities = 28/192 (14%), Positives = 60/192 (31%), Gaps = 41/192 (21%)

Query: 8   LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLK-SYLKSLGADYVF-- 64
           +  G  V   G     G   +Q+AR  G  T+ +          K    + +GA      
Sbjct: 180 IKAGSTVAILGG-GVIGLLTVQLARLAGATTVILS----TRQATKRRLAEEVGATATVDP 234

Query: 65  TEEELRNISRDASIPKPK---LALNCVGGNSATNL-LRTLVSKGVMVTYGGMSRE-PVQI 119
           +  ++           P    + + C G         R   + G +V  G + +   V+I
Sbjct: 235 SAGDVVEAIAGPVGLVPGGVDVVIECAGVAETVKQSTRLAKAGGTVVILGVLPQGEKVEI 294

Query: 120 PTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELT-----EMMRTGKLAAPAHKFVT 174
                +F+++ + G                 S +N        +++ TG +     + ++
Sbjct: 295 EPFDILFRELRVLG-----------------SFINPFVHRRAADLVATGAI--EIDRMIS 335

Query: 175 ----LKNFQEAL 182
               L    + +
Sbjct: 336 RRISLDEAPDVI 347

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 327

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 39/197 (19%), Positives = 67/197 (34%), Gaps = 41/197 (20%)

Query: 1   MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
           +L+    + P +  + + A    G    Q A+  G K I  V       K +      GA
Sbjct: 131 LLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTA---QKAQ-SALKAGA 186

Query: 61  DYVFT------EEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSR 114
             V         E L+ I+    +    +  + VG ++    L  L  +G+MV++G  S 
Sbjct: 187 WQVINYREEDLVERLKEITGGKKVR---VVYDSVGRDTWERSLDCLQRRGLMVSFGNSSG 243

Query: 115 EPVQIPTSAFIFKDI------TLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKL--- 165
               +       K        +L+G+  TR         E     NEL  ++ +G +   
Sbjct: 244 AVTGVNLGILNQKGSLYVTRPSLQGYITTR--------EELTEASNELFSLIASGVIKVD 295

Query: 166 -----------AAPAHK 171
                      A  AH+
Sbjct: 296 VAEQQKYPLKDAQRAHE 312

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* Length = 354

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 41/197 (20%), Positives = 74/197 (37%), Gaps = 22/197 (11%)

Query: 8   LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--T 65
           +  GD V+ +   S  G   IQ+ R  G   +    ++    KL+   + LGA   F   
Sbjct: 160 VQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQ---KKLQ-MAEKLGAAAGFNYK 215

Query: 66  EEELRNISRDASIPKP-KLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAF 124
           +E+    +   +      L L+C+GG+     +  L   G  V YG M    +  P  + 
Sbjct: 216 KEDFSEATLKFTKGAGVNLILDCIGGSYWEKNVNCLALDGRWVLYGLMGGGDINGPLFSK 275

Query: 125 IF-KDITLRGHWMTRWQKENKESAERKSMMNELTE-------MMRTGKLAAPAHKFVTLK 176
           +  K  +L    + R    ++++  ++ ++N  TE            +L     +   + 
Sbjct: 276 LLFKRGSLITSLL-R----SRDNKYKQMLVNAFTEQILPHFSTEGPQRLLPVLDRIYPVT 330

Query: 177 NFQEA--LMNTMSIQGK 191
             QEA   M      GK
Sbjct: 331 EIQEAHKYMEANKNIGK 347

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} Length = 346

 Score = 48.0 bits (115), Expect = 5e-07
 Identities = 28/169 (16%), Positives = 59/169 (34%), Gaps = 14/169 (8%)

Query: 2   LKDYNSLSPGDVV-IQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
           +    + + G  + I NGA    G    QIA+ +GL+ I      + I+    + K +GA
Sbjct: 142 ISRNRNENEGKTLLIINGA-GGVGSIATQIAKAYGLRVITTASRNETIE----WTKKMGA 196

Query: 61  DYV--FTEEELRNISRDASIPKPKLALNCVGGNSA-TNLLRTLVSKGVMVTYGGMSREPV 117
           D V    E  L    +   I            +    ++++ +  +G + T         
Sbjct: 197 DIVLNHKESLLNQF-KTQGIELVDYVFCTFNTDMYYDDMIQLVKPRGHIATIVAF---EN 252

Query: 118 QIPTSAFIFKDITLRGHWM-TRWQKENKESAERKSMMNELTEMMRTGKL 165
               +A   K ++    +M  R   +  +  +    + ++T  +     
Sbjct: 253 DQDLNALKPKSLSFSHEFMFARPLNQTDDMIKHHEYLEDITNKVEQNIY 301

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* Length = 330

 Score = 47.3 bits (113), Expect = 7e-07
 Identities = 34/146 (23%), Positives = 51/146 (34%), Gaps = 31/146 (21%)

Query: 2   LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD 61
           L+          V+  GA    G   + +    G   +    NR+  D    YLK LGA 
Sbjct: 142 LEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAAD----YLKQLGAS 197

Query: 62  YVFTEEELRNISRDASIPKPKLALN---------CVGGNSATNLLRTLVSKGVMVTYG-- 110
            V        ISR+        AL+          VGG    +LL  +   G +   G  
Sbjct: 198 EV--------ISREDVYDGTLKALSKQQWQGAVDPVGGKQLASLLSKIQYGGSVAVSGLT 249

Query: 111 -GMSREPVQIPTSA--FIFKDITLRG 133
            G      ++P +   FI + ++L G
Sbjct: 250 GGG-----EVPATVYPFILRGVSLLG 270

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} Length = 375

 Score = 47.4 bits (113), Expect = 8e-07
 Identities = 28/188 (14%), Positives = 58/188 (30%), Gaps = 25/188 (13%)

Query: 9   SPGDVVIQNGANSACGQNVIQIARHWGLKTINIV--RNRDDIDKLKSYLKSLGADYV--F 64
             G  V+  GA+   G   IQ+ + W      +      +        ++ LGAD V  +
Sbjct: 182 CTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCSQDASE-------LVRKLGADDVIDY 234

Query: 65  TEEELRNISRDASIPKPKLALNCVGGNSATNLLRTL--VSKGVMVTYGGMSREPVQIPTS 122
               +    +   +      L+ VGG++ T     L   S    VT        + +   
Sbjct: 235 KSGSVEEQLKS--LKPFDFILDNVGGSTETWAPDFLKKWSGATYVTLVTPF--LLNMDRL 290

Query: 123 AFIFKDITLRGHWMTRWQKENKESAERKSM--------MNELTEMMRTGKLAAPAHKFVT 174
                 +       ++  K   +    +          ++++ E++  GK+     +   
Sbjct: 291 GIADGMLQTGVTVGSKALKHFWKGVHYRWAFFMASGPCLDDIAELVDAGKIRPVIEQTFP 350

Query: 175 LKNFQEAL 182
                EA 
Sbjct: 351 FSKVPEAF 358

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 Length = 328

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 28/146 (19%), Positives = 52/146 (35%), Gaps = 31/146 (21%)

Query: 2   LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD 61
           L+++        V+  GA    G   + +    G           + D    YL+ LGA 
Sbjct: 141 LEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHD----YLRVLGAK 196

Query: 62  YVFTEEELRNISRDASIPKPKLALN---------CVGGNSATNLLRTLVSKGVMVTYG-- 110
            V        ++R+  + +    L+          VGG +   +L  +   G +   G  
Sbjct: 197 EV--------LAREDVMAERIRPLDKQRWAAAVDPVGGRTLATVLSRMRYGGAVAVSGLT 248

Query: 111 -GMSREPVQIPTSA--FIFKDITLRG 133
            G      ++PT+   FI + ++L G
Sbjct: 249 GGA-----EVPTTVHPFILRGVSLLG 269

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* Length = 340

 Score = 46.0 bits (110), Expect = 2e-06
 Identities = 29/138 (21%), Positives = 46/138 (33%), Gaps = 15/138 (10%)

Query: 5   YNSL-----SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG 59
           Y  L      PG  V+ +G     G   +Q AR  GL+   +     D  KL    + LG
Sbjct: 156 YKGLKVTDTRPGQWVVISGIGGL-GHVAVQYARAMGLRVAAVDI---DDAKLN-LARRLG 210

Query: 60  ADYV--FTEEELRNISRDASIPKPKLALNCVGGNSATN-LLRTLVSKGVMVTYGGMSREP 116
           A+      + +     +   I      L       A +  +  +   G +    G+    
Sbjct: 211 AEVAVNARDTDPAAWLQ-KEIGGAHGVLVTAVSPKAFSQAIGMVRRGGTIAL-NGLPPGD 268

Query: 117 VQIPTSAFIFKDITLRGH 134
              P    + K IT+RG 
Sbjct: 269 FGTPIFDVVLKGITIRGS 286

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A Length = 356

 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 26/133 (19%), Positives = 54/133 (40%), Gaps = 13/133 (9%)

Query: 8   LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLK-SYLKSLGADYVF-- 64
           ++ G  V+  GA    G   + +A+  G   + +     D+   + S  K +GAD V   
Sbjct: 169 VTLGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVT----DLSATRLSKAKEIGADLVLQI 223

Query: 65  ---TEEELRNISRDASIPKPKLALNCVGGNSATNL-LRTLVSKGVMVTYGGMSREPVQIP 120
              + +E+          KP++ + C G  ++    +    S G +V   G+  E   +P
Sbjct: 224 SKESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLV-LVGLGSEMTTVP 282

Query: 121 TSAFIFKDITLRG 133
                 +++ ++G
Sbjct: 283 LLHAAIREVDIKG 295

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A Length = 339

 Score = 44.5 bits (106), Expect = 7e-06
 Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 9/110 (8%)

Query: 28  IQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV--FTEEELRNISRDASIPKPKLAL 85
           +Q A+  GL  + +    +   KL+   K LGAD V    +E+     ++  +     A+
Sbjct: 181 VQYAKAMGLNVVAVDIGDE---KLE-LAKELGADLVVNPLKEDAAKFMKEK-VGGVHAAV 235

Query: 86  NCVGGNSATN-LLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGH 134
                  A      ++   G  V   G+  E + IP    +   I + G 
Sbjct: 236 VTAVSKPAFQSAYNSIRRGGACVL-VGLPPEEMPIPIFDTVLNGIKIIGS 284

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 Length = 198

 Score = 43.7 bits (104), Expect = 8e-06
 Identities = 33/177 (18%), Positives = 57/177 (32%), Gaps = 26/177 (14%)

Query: 8   LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE 67
           LSPG+ V+ + A    G   + IA+  G +      +     K +  L  LG +YV    
Sbjct: 36  LSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSD---AK-REMLSRLGVEYVGD-- 89

Query: 68  ELRNISRDASIPKPKLA----------LNCVGGNSATNLLRTLVSKGVMVTYGGMS-REP 116
                SR        L           LN + G +    ++ L   G  +  G       
Sbjct: 90  -----SRSVDFADEILELTDGYGVDVVLNSLAGEAIQRGVQILAPGGRFIELGKKDVYAD 144

Query: 117 VQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAA-PAHKF 172
             +  +A   K  +     +    K       +  ++  + + +  GKL   P   F
Sbjct: 145 ASLGLAALA-KSASFSVVDLDLNLKLQPARYRQ--LLQHILQHVADGKLEVLPVTAF 198

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* Length = 343

 Score = 44.1 bits (105), Expect = 1e-05
 Identities = 31/186 (16%), Positives = 62/186 (33%), Gaps = 32/186 (17%)

Query: 8   LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLK-SYLKSLGADYV-FT 65
              G  V+  GA    G     + R  G   I +     D +  + ++ +      V   
Sbjct: 162 GVSGKSVLITGA-GPIGLMAAMVVRASGAGPILVS----DPNPYRLAFARPYADRLVNPL 216

Query: 66  EEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIP-TSAF 124
           EE+L  + R  +    ++ L   G  +A +     +  G      G+  +P++       
Sbjct: 217 EEDLLEVVRRVTGSGVEVLLEFSGNEAAIHQGLMALIPGGEARILGIPSDPIRFDLAGEL 276

Query: 125 IFKDITLRGHWMTR----WQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVT----LK 176
           + + IT  G    R    W +               T ++ +G++       +T    L 
Sbjct: 277 VMRGITAFGIAGRRLWQTWMQ--------------GTALVYSGRV--DLSPLLTHRLPLS 320

Query: 177 NFQEAL 182
            ++EA 
Sbjct: 321 RYREAF 326

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Length = 2512

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 29/188 (15%), Positives = 58/188 (30%), Gaps = 13/188 (6%)

Query: 2    LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD 61
            L     + PG+ V+ +  +   GQ  I IA   G +    V + +    L++    L   
Sbjct: 1659 LVVRGRMQPGESVLIHSGSGGVGQAAIAIALSRGCRVFTTVGSAEKRAYLQARFPQLDET 1718

Query: 62   YVFT------EEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMS-R 114
                      E+ +   +    +    L LN +        +R L   G  +  G     
Sbjct: 1719 CFANSRDTSFEQHVLRHTAGKGV---DLVLNSLAEEKLQASVRCLAQHGRFLEIGKFDLS 1775

Query: 115  EPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVT 174
                +  + F  K++T   H +       +  A  + +   L   ++ G +         
Sbjct: 1776 NNHALGMAVF-LKNVTF--HGILLDSLFEEGGATWQEVSELLKAGIQEGVVQPLKCTVFP 1832

Query: 175  LKNFQEAL 182
                + A 
Sbjct: 1833 RTKVEAAF 1840

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* Length = 333

 Score = 43.7 bits (104), Expect = 1e-05
 Identities = 45/201 (22%), Positives = 75/201 (37%), Gaps = 38/201 (18%)

Query: 2   LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD 61
           L +   +  G+ V+ + A  A G  V QIA+  G K +    + + I     YLK +G D
Sbjct: 137 LLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIA----YLKQIGFD 192

Query: 62  YVF---TEEELRNISRDASIPKPKLALNC----------VGG---NSATNLLRT---LVS 102
             F   T   L             L              VGG   N+  + ++    +  
Sbjct: 193 AAFNYKTVNSLEE----------ALKKASPDGYDCYFDNVGGEFLNTVLSQMKDFGKIAI 242

Query: 103 KGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRT 162
            G +  Y  M + P      + I+K + + G  + RWQ + +E A R     +L + +  
Sbjct: 243 CGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVYRWQGDVREKALR-----DLMKWVLE 297

Query: 163 GKLAAPAHKFVTLKNFQEALM 183
           GK+    H     +N   A +
Sbjct: 298 GKIQYHEHVTKGFENMPAAFI 318

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* Length = 324

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 31/144 (21%), Positives = 52/144 (36%), Gaps = 29/144 (20%)

Query: 2   LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD 61
           L+D         V+  GA+   G   + +    G +   +            YLKSLGA+
Sbjct: 138 LEDAGIRPQDGEVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHG----YLKSLGAN 193

Query: 62  YVFTEEELRNISRDASIPKPKL-------ALNCVGGNSATNLLRTLVSKGVMVTYG---G 111
            +        +SRD       L       A++ VG      +L  +   G +   G   G
Sbjct: 194 RI--------LSRDEFAESRPLEKQLWAGAIDTVGDKVLAKVLAQMNYGGCVAACGLAGG 245

Query: 112 MSREPVQIPTSA--FIFKDITLRG 133
                  +PT+   FI +++ L+G
Sbjct: 246 F-----ALPTTVMPFILRNVRLQG 264

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 Length = 352

 Score = 42.2 bits (100), Expect = 4e-05
 Identities = 23/134 (17%), Positives = 44/134 (32%), Gaps = 14/134 (10%)

Query: 8   LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLK-SYLKSLGADYVFT- 65
           +  G  V+  GA    G   +  A+ +G   +            +    K+ GAD     
Sbjct: 166 VQLGTTVLVIGA-GPIGLVSVLAAKAYGAFVV-CT----ARSPRRLEVAKNCGADVTLVV 219

Query: 66  ------EEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQI 119
                 E  +    R A    P + ++C G      +   +   G  +   GM  + V +
Sbjct: 220 DPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQMVTV 279

Query: 120 PTSAFIFKDITLRG 133
           P      ++I ++ 
Sbjct: 280 PLVNACAREIDIKS 293

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* Length = 357

 Score = 41.9 bits (99), Expect = 6e-05
 Identities = 33/202 (16%), Positives = 59/202 (29%), Gaps = 30/202 (14%)

Query: 10  PGDVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE 67
                   G   + G   + + +    G + +  +  RD  D     ++ L A YV + +
Sbjct: 172 DPSSAFVLGN-GSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYVDSRQ 230

Query: 68  ELRNISRDASIPKPKLALNCVGGNSATNL-LRTLVSKGVMVTYGGMSREPVQIPTSAF-- 124
                  D    +        G        ++ L   GV    G  S    ++   AF  
Sbjct: 231 TPVEDVPDVY-EQMDFIYEATGFPKHAIQSVQALAPNGVGALLGVPSDWAFEVDAGAFHR 289

Query: 125 --IFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVT----LKNF 178
             +  +  L G        E+ E+A             +  K        VT    L  F
Sbjct: 290 EMVLHNKALVGSV--NSHVEHFEAA--------TVTFTKLPKW--FLEDLVTGVHPLSEF 337

Query: 179 QEALMNTMSIQGKSGVKYYIDF 200
           + A  +       + +K  I+F
Sbjct: 338 EAAFDD-----DDTTIKTAIEF 354

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} Length = 347

 Score = 41.4 bits (98), Expect = 8e-05
 Identities = 27/136 (19%), Positives = 48/136 (35%), Gaps = 9/136 (6%)

Query: 2   LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD 61
           LK  N L  G  V  +GA    G   +Q A+  G + + I        K +   +S+G +
Sbjct: 162 LKSAN-LMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEG---KEE-LFRSIGGE 216

Query: 62  YVF---TEEELRNISRDASIPKPKLALNCVGGNSATN-LLRTLVSKGVMVTYGGMSREPV 117
                  E+++      A+       +N     +A     R + + G  V  G  +    
Sbjct: 217 VFIDFTKEKDIVGAVLKATDGGAHGVINVSVSEAAIEASTRYVRANGTTVLVGMPAGAKC 276

Query: 118 QIPTSAFIFKDITLRG 133
                  + K I++ G
Sbjct: 277 CSDVFNQVVKSISIVG 292

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} Length = 363

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 29/158 (18%), Positives = 61/158 (38%), Gaps = 15/158 (9%)

Query: 13  VVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYV--FTEEEL 69
           ++I  GA    G   +QIAR    L  I      +  +    ++KSLGA +V   ++   
Sbjct: 175 ILIVGGAGGV-GSIAVQIARQRTDLTVIATASRPETQE----WVKSLGAHHVIDHSKPLA 229

Query: 70  RNISRDASIPKPKLALNCVGGNS-ATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKD 128
             ++    +  P    +    +  A  +   +  +G           P       F  K 
Sbjct: 230 AEVAALG-LGAPAFVFSTTHTDKHAAEIADLIAPQGRFCLIDD----PSAFDIMLFKRKA 284

Query: 129 ITLRGHWM-TRWQKENKESAERKSMMNELTEMMRTGKL 165
           +++    M TR      + +E+  ++N+++ ++  G+L
Sbjct: 285 VSIHHELMFTRPMFGTPDMSEQGRLLNDVSRLVDEGRL 322

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 1e-04
 Identities = 30/202 (14%), Positives = 64/202 (31%), Gaps = 77/202 (38%)

Query: 40  NIVRNRD--DI-DKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGNSATNL 96
             V N D  D+ D  KS         + ++EE+ +I                  +    L
Sbjct: 28  AFVDNFDCKDVQDMPKS---------ILSKEEIDHI---IMSKDAV--------SGTLRL 67

Query: 97  LRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGH--W-MTRWQKENKE-SAERKSM 152
             TL+SK           E VQ       F +  LR +  + M+  + E ++ S   +  
Sbjct: 68  FWTLLSKQ---------EEMVQK------FVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112

Query: 153 MNELTEMMRTGKLAAPAHKFVT----LKNFQEALMNTMSIQ----------GKS------ 192
           + +   +    ++ A  +  V+        ++AL+     +          GK+      
Sbjct: 113 IEQRDRLYNDNQVFAKYN--VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170

Query: 193 ------------GVKYYIDFRQ 202
                        + ++++ + 
Sbjct: 171 CLSYKVQCKMDFKI-FWLNLKN 191

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 38.4 bits (88), Expect = 4e-04
 Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 23/50 (46%)

Query: 45 RDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGNSAT 94
          +  + KL++ LK L AD             D++   P LA+       AT
Sbjct: 19 KQALKKLQASLK-LYAD-------------DSA---PALAIK------AT 45

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* Length = 345

 Score = 39.1 bits (92), Expect = 5e-04
 Identities = 37/201 (18%), Positives = 73/201 (36%), Gaps = 39/201 (19%)

Query: 2   LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD 61
             +  S   G+ V  + A+ A GQ V Q+A+  G   +    +++ +D LK      G D
Sbjct: 147 FYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLK---TKFGFD 203

Query: 62  YVF---TEEELRNISRDASIPKPKLALNC----------VGG---NSATNLLRT---LVS 102
             F    E +L             L              VGG   ++    +     +  
Sbjct: 204 DAFNYKEESDLTA----------ALKRCFPNGIDIYFENVGGKMLDAVLVNMNMHGRIAV 253

Query: 103 KGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRT 162
            G++  Y   ++E V   ++  I+K   ++G  ++ +  +  +       +  +   +R 
Sbjct: 254 CGMISQYNLENQEGVHNLSN-IIYKRNRIQGFVVSDFYDKYSK------FLEFVLPHIRE 306

Query: 163 GKLAAPAHKFVTLKNFQEALM 183
           GK+         L+   EAL+
Sbjct: 307 GKITYVEDVADGLEKAPEALV 327

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 Length = 380

 Score = 38.4 bits (90), Expect = 8e-04
 Identities = 33/206 (16%), Positives = 63/206 (30%), Gaps = 50/206 (24%)

Query: 10  PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGADYVFTEEE 68
            G  V+  GA    G   + IAR  G + + ++         +  L + +GAD       
Sbjct: 195 AGKTVVIQGA-GPLGLFGVVIARSLGAENVIVI----AGSPNRLKLAEEIGADLTL---- 245

Query: 69  LRNISRDASIPKPKL------------ALNCVGGNSATNLLRTLVSKGVMVTYGGMSREP 116
             N    +   + K              L   G + A      L+ +G   +  G++   
Sbjct: 246 --NRRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQ 303

Query: 117 VQIPTSAF---IFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFV 173
             +P   +   + K+ T +G W+     +            +   +           K +
Sbjct: 304 DPVPFKVYEWLVLKNATFKGIWV----SDTSH-------FVKTVSITSRNYQ--LLSKLI 350

Query: 174 T----LKNFQEA--LMNTMSIQGKSG 193
           T    LK   +A  LM       ++ 
Sbjct: 351 THRLPLKEANKALELME----SREAL 372

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	202
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	99.98
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	99.98
4eye_A	342	Probable oxidoreductase; structural genomics, niai	99.97
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	99.97
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	99.97
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	99.97
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	99.97
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	99.97
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	99.97
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	99.96
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	99.96
3gms_A	340	Putative NADPH:quinone reductase; structural genom	99.96
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	99.96
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	99.96
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	99.96
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	99.96
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	99.96
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	99.96
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	99.96
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	99.96
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	99.96
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	99.96
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	99.96
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	99.96
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	99.96
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	99.96
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	99.96
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	99.95
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	99.95
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	99.95
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	99.95
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	99.95
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	99.95
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	99.95
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	99.95
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	99.95
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	99.95
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	99.95
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	99.95
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	99.95
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	99.95
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	99.95
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	99.95
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	99.95
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	99.95
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	99.95
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	99.95
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	99.95
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	99.95
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	99.95
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	99.95
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	99.95
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	99.95
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	99.95
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	99.95
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	99.95
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	99.95
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	99.94
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	99.94
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	99.94
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	99.94
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	99.94
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	99.94
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	99.94
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	99.94
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	99.94
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	99.93
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	99.92
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	99.92
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	99.91
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	99.88
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	99.33
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	99.2
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	99.18
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	99.17
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	98.99
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	98.86
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	98.82
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	98.74
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	98.71
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	98.6
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	98.56
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	98.54
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	98.49
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	98.44
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	98.42
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.41
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	98.41
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	98.4
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	98.39
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	98.37
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	98.37
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	98.37
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	98.36
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	98.36
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	98.35
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	98.35
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	98.35
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	98.34
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	98.33
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	98.33
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	98.33
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	98.33
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	98.32
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	98.32
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	98.31
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	98.29
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	98.29
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	98.29
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	98.28
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.27
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	98.27
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	98.26
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	98.26
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	98.26
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	98.26
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	98.25
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	98.24
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	98.24
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	98.24
3imf_A	257	Short chain dehydrogenase; structural genomics, in	98.24
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	98.24
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	98.24
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	98.23
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.23
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	98.22
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	98.22
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	98.22
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	98.22
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	98.21
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	98.21
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	98.21
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	98.2
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	98.2
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	98.2
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	98.19
3rih_A	293	Short chain dehydrogenase or reductase; structural	98.19
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	98.19
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	98.19
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	98.19
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	98.19
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	98.18
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	98.18
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	98.17
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	98.17
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	98.17
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	98.16
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	98.16
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	98.15
3cxt_A	291	Dehydrogenase with different specificities; rossma	98.15
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	98.15
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	98.15
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	98.15
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	98.14
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	98.14
3c85_A	183	Putative glutathione-regulated potassium-efflux S	98.14
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	98.13
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	98.12
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	98.12
1xq1_A	266	Putative tropinone reducatse; structural genomics,	98.12
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	98.12
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	98.11
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	98.11
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	98.11
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	98.11
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	98.1
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	98.1
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	98.1
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	98.1
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	98.1
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	98.1
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	98.1
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	98.1
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	98.1
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	98.1
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	98.1
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	98.09
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	98.09
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	98.09
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	98.09
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	98.09
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	98.09
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	98.09
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	98.08
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	98.08
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	98.08
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	98.08
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	98.08
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	98.07
1xkq_A	280	Short-chain reductase family member (5D234); parra	98.07
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	98.07
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	98.07
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	98.07
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	98.07
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	98.06
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	98.06
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	98.06
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	98.06
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	98.06
1xhl_A	297	Short-chain dehydrogenase/reductase family member	98.06
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	98.06
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	98.06
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	98.05
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	98.05
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	98.04
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	98.04
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	98.04
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	98.04
4dqx_A	277	Probable oxidoreductase protein; structural genomi	98.03
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	98.03
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	98.03
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	98.03
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	98.03
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	98.03
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	98.03
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	98.03
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	98.02
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	98.02
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	98.02
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	98.02
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	98.02
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	98.02
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	98.01
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	98.01
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	98.01
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	98.01
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	98.01
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	98.0
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	98.0
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	98.0
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	98.0
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	98.0
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	97.99
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	97.99
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	97.99
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	97.99
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	97.99
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	97.99
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	97.98
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	97.98
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	97.98
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	97.98
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	97.98
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	97.98
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	97.97
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	97.97
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.96
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.96
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	97.95
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	97.94
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	97.93
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	97.92
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	97.92
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	97.92
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	97.91
1spx_A	278	Short-chain reductase family member (5L265); paral	97.91
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.91
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	97.91
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	97.9
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	97.9
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	97.89
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	97.89
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	97.89
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	97.89
3qp9_A	525	Type I polyketide synthase pikaii; rossmann fold,	97.89
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	97.88
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	97.88
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	97.87
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	97.87
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	97.87
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	97.86
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	97.86
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	97.86
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	97.86
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	97.86
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	97.84
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	97.84
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	97.84
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	97.84
3mje_A	496	AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.	97.82
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	97.82
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	97.82
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	97.8
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	97.8
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	97.8
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	97.79
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	97.79
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	97.79
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	97.79
4eue_A	418	Putative reductase CA_C0462; TER, biofuel, synthet	97.78
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	97.77
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	97.77
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	97.76
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	97.76
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	97.76
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	97.75
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	97.75
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	97.74
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	97.74
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	97.74
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	97.74
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	97.73
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	97.72
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	97.72
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	97.72
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	97.71
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	97.71
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	97.69
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	97.69
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.69
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.69
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	97.68
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	97.68
1jtv_A	327	17 beta-hydroxysteroid dehydrogenase type 1; stero	97.68
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	97.68
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.68
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	97.65
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	97.65
3zu3_A	405	Putative reductase YPO4104/Y4119/YP_4011; oxidored	97.65
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	97.65
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	97.64
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	97.64
1xq6_A	253	Unknown protein; structural genomics, protein stru	97.64
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	97.63
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	97.63
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	97.63
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	97.61
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	97.6
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	97.58
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	97.58
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	97.57
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	97.56
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	97.56
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	97.55
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	97.54
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	97.53
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	97.53
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	97.53
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	97.53
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	97.52
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	97.52
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	97.51
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	97.51
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	97.5
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	97.49
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	97.48
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	97.47
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	97.47
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	97.47
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	97.47
4ggo_A	401	Trans-2-enoyl-COA reductase; rossmann fold, oxidor	97.47
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	97.45
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	97.45
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	97.45
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	97.45
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	97.44
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	97.44
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	97.43
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	97.42
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	97.42
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	97.41
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.4
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	97.4
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	97.39
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	97.39
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	97.38
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	97.38
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.38
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	97.38
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	97.36
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	97.36
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	97.35
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	97.34
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	97.34
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	97.34
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	97.31
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	97.3
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	97.29
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	97.29
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	97.27
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	97.27
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	97.27
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.27
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	97.26
4e4y_A	244	Short chain dehydrogenase family protein; structur	97.26
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	97.25
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	97.24
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	97.24
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	97.24
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	97.23
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	97.22
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	97.22
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	97.22
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	97.22
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	97.22
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	97.21
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	97.21
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	97.2
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.2
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	97.2
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	97.19
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	97.17
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	97.16
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.16
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	97.16
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	97.15
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	97.15
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	97.14
3l07_A	285	Bifunctional protein fold; structural genomics, ID	97.14
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	97.14
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	97.12
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	97.11
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	97.11
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	97.11
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	97.1
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.09
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	97.08
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	97.08
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	97.07
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	97.07
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	97.06
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	97.06
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	97.06
3zen_D	3089	Fatty acid synthase; transferase, mycolic acid bio	97.05
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	97.04
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	97.04
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	97.04
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	97.04
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	97.03
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	97.03
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	97.02
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	97.02
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	97.01
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	97.01
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.0
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	97.0
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.99
3f4k_A	257	Putative methyltransferase; structural genomics, P	96.98
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	96.98
1u7z_A	226	Coenzyme A biosynthesis bifunctional protein coabc	96.97
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	96.97
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	96.96
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	96.95
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	96.93
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	96.92
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	96.92
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	96.92
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	96.92
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	96.92
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	96.89
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	96.89
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	96.88
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	96.87
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	96.85
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	96.85
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	96.84
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	96.84
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	96.83
4f6c_A	427	AUSA reductase domain protein; thioester reductase	96.83
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	96.83
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	96.82
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	96.81
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	96.81
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	96.8
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	96.8
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	96.8
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	96.79
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	96.77
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	96.75
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	96.74
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	96.74
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	96.74
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	96.73
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	96.73
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	96.73
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	96.72
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	96.72
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	96.72
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	96.72
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	96.71
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	96.71
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	96.71
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	96.71
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	96.7
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	96.7
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	96.69
2y1e_A	398	1-deoxy-D-xylulose 5-phosphate reductoisomerase; o	96.69
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	96.68
2b25_A	336	Hypothetical protein; structural genomics, methyl	96.68
2pff_A	1688	Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl	96.68
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	96.67
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	96.67
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	96.67
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	96.66
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	96.66
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	96.65
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	96.65
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	96.65
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	96.65
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	96.64

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=99.98  E-value=4.9e-31  Score=203.13  Aligned_cols=192  Identities=20%  Similarity=0.257  Sum_probs=165.6

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeCh--hHHHh-HHHhhCC
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE--EELRN-ISRDASI   78 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~--~~~~~-~~~~~~~   78 (202)
                      +.+.+++++|++|||+|++|++|++++|+|+..|++|++++++++    +++.++++|++.++++  .++.+ +.+.+++
T Consensus       140 l~~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~----~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~  215 (334)
T 3qwb_A          140 TNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDE----KLKIAKEYGAEYLINASKEDILRQVLKFTNG  215 (334)
T ss_dssp             HHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHH----HHHHHHHTTCSEEEETTTSCHHHHHHHHTTT
T ss_pred             HHHhccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHcCCcEEEeCCCchHHHHHHHHhCC
Confidence            345678999999999998889999999999999999999988765    6889999999999875  45666 8888877


Q ss_pred             CCCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHH
Q psy2961          79 PKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTE  158 (202)
Q Consensus        79 ~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  158 (202)
                      .++|++|||+|++.+..++++++++|+++.+|...+....++...++.+++++.+++...+..   .+....+.++++.+
T Consensus       216 ~g~D~vid~~g~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  292 (334)
T 3qwb_A          216 KGVDASFDSVGKDTFEISLAALKRKGVFVSFGNASGLIPPFSITRLSPKNITLVRPQLYGYIA---DPEEWKYYSDEFFG  292 (334)
T ss_dssp             SCEEEEEECCGGGGHHHHHHHEEEEEEEEECCCTTCCCCCBCGGGGTTTTCEEECCCGGGGSC---SHHHHHHHHHHHHH
T ss_pred             CCceEEEECCChHHHHHHHHHhccCCEEEEEcCCCCCCCCcchhhhhhCceEEEEEEeccccC---CHHHHHHHHHHHHH
Confidence            899999999999877789999999999999997665444667777888999999888766543   22556778899999


Q ss_pred             HHHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEeecC
Q psy2961         159 MMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFRQ  202 (202)
Q Consensus       159 ~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~~~  202 (202)
                      ++++|++++.++++|+++++++||+.+.  +++..||+|+++++
T Consensus       293 l~~~g~l~~~i~~~~~l~~~~~A~~~~~--~~~~~gKvvi~~~q  334 (334)
T 3qwb_A          293 LVNSKKLNIKIYKTYPLRDYRTAAADIE--SRKTVGKLVLEIPQ  334 (334)
T ss_dssp             HHHTTSSCCCEEEEEEGGGHHHHHHHHH--TTCCCBEEEEECCC
T ss_pred             HHHCCCccCceeeEEcHHHHHHHHHHHH--hCCCceEEEEecCC
Confidence            9999999999999999999999999999  88889999999864

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=99.98  E-value=7.2e-31  Score=203.83  Aligned_cols=196  Identities=48%  Similarity=0.787  Sum_probs=161.1

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHH-Hh-HHHhhCCC
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEEL-RN-ISRDASIP   79 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~-~~-~~~~~~~~   79 (202)
                      |.+.+++++|++|||+|++|++|++++|+|+..|+++|+++++++..+++++.++++|++.++++.+. .+ +.+.+.+.
T Consensus       159 l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~  238 (357)
T 1zsy_A          159 LMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITEEELRRPEMKNFFKDM  238 (357)
T ss_dssp             HHHSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHHHTTCSEEEEHHHHHSGGGGGTTSSS
T ss_pred             HHHHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHHhcCCcEEEecCcchHHHHHHHHhCC
Confidence            34567899999999999988999999999999999999999876654556788999999999987543 23 66655543


Q ss_pred             -CCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHH
Q psy2961          80 -KPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTE  158 (202)
Q Consensus        80 -~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  158 (202)
                       ++|++|||+|++.....+++++++|+++.+|.....+..++...++.+++++.|++...|..... +....+.++++++
T Consensus       239 ~~~Dvvid~~g~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~-~~~~~~~~~~~~~  317 (357)
T 1zsy_A          239 PQPRLALNCVGGKSSTELLRQLARGGTMVTYGGMAKQPVVASVSLLIFKDLKLRGFWLSQWKKDHS-PDQFKELILTLCD  317 (357)
T ss_dssp             CCCSEEEESSCHHHHHHHHTTSCTTCEEEECCCCTTCCBCCCHHHHHHSCCEEEECCHHHHHHHSC-HHHHHHHHHHHHH
T ss_pred             CCceEEEECCCcHHHHHHHHhhCCCCEEEEEecCCCCCCCCCHHHHHhcCceEEEEEcchhcccCC-HHHHHHHHHHHHH
Confidence             69999999999888778999999999999986554445566666778999999998766543221 2445678999999


Q ss_pred             HHHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         159 MMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       159 ~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      ++++|++++.+.++|+++++++||+.+.  +++..||+|+++
T Consensus       318 l~~~g~l~~~~~~~~~l~~~~~A~~~~~--~~~~~gKvvl~~  357 (357)
T 1zsy_A          318 LIRRGQLTAPACSQVPLQDYQSALEASM--KPFISSKQILTM  357 (357)
T ss_dssp             HHHTTSSCCCCEEEEEGGGHHHHHHHHT--SSSCSSEEEEEC
T ss_pred             HHHcCCCcCccceEEcHHHHHHHHHHHH--hCCCCCcEEEeC
Confidence            9999999998889999999999999998  777788999975

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=99.97  E-value=1.2e-30  Score=201.51  Aligned_cols=190  Identities=22%  Similarity=0.307  Sum_probs=156.7

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeCh-hHHHh-HHHhhCCC
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE-EELRN-ISRDASIP   79 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~-~~~~~-~~~~~~~~   79 (202)
                      |.+.+++++|++|||+|++|++|++++|+|+..|++|++++++++    +++.++++|++.++++ .++.+ +.+.+++.
T Consensus       151 l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~----~~~~~~~~ga~~v~~~~~~~~~~v~~~~~~~  226 (342)
T 4eye_A          151 YARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTA----ATEFVKSVGADIVLPLEEGWAKAVREATGGA  226 (342)
T ss_dssp             HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGG----GHHHHHHHTCSEEEESSTTHHHHHHHHTTTS
T ss_pred             HHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHhcCCcEEecCchhHHHHHHHHhCCC
Confidence            446788999999999999889999999999999999999998876    5788999999998865 45666 88888777


Q ss_pred             CCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHH
Q psy2961          80 KPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEM  159 (202)
Q Consensus        80 ~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (202)
                      ++|++|||+|++.+..++++++++|+++.+|...+....++...++.+++++.|+....+....+  ....+.++++.++
T Consensus       227 g~Dvvid~~g~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~--~~~~~~~~~~~~l  304 (342)
T 4eye_A          227 GVDMVVDPIGGPAFDDAVRTLASEGRLLVVGFAAGGIPTIKVNRLLLRNASLIGVAWGEFLRTHA--DYLYETQAGLEKL  304 (342)
T ss_dssp             CEEEEEESCC--CHHHHHHTEEEEEEEEEC----------CCCCGGGTTCEEEECCHHHHHHHCT--THHHHHHHHHHHH
T ss_pred             CceEEEECCchhHHHHHHHhhcCCCEEEEEEccCCCCCccCHHHHhhcCCEEEEEehhhhhhcCH--HHHHHHHHHHHHH
Confidence            99999999999888889999999999999996655444567777889999999998776654443  4557889999999


Q ss_pred             HHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         160 MRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       160 ~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      +++| +++.++++|+++++++||+.+.  +++..||+|+++
T Consensus       305 ~~~g-l~~~i~~~~~l~~~~~A~~~~~--~~~~~gKvvl~P  342 (342)
T 4eye_A          305 VAEG-MRPPVSARIPLSEGRQALQDFA--DGKVYGKMVLVP  342 (342)
T ss_dssp             HHTT-CCCCEEEEEEGGGHHHHHHHHH--TTCCCSEEEEEC
T ss_pred             HHcC-CCCCcceEEeHHHHHHHHHHHH--hCCCCceEEEeC
Confidence            9999 9999999999999999999999  888899999873

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=99.97  E-value=3.4e-30  Score=200.41  Aligned_cols=180  Identities=20%  Similarity=0.230  Sum_probs=157.3

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeCh--hHHHh-HHHhhCC
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE--EELRN-ISRDASI   78 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~--~~~~~-~~~~~~~   78 (202)
                      |.+.+++++|++|||+| +|++|++++|+|+..|++|++++++++    +++.++++|++.++++  .++.+ +++.+++
T Consensus       181 l~~~~~~~~g~~VlV~G-~G~vG~~a~qla~~~Ga~Vi~~~~~~~----~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g  255 (363)
T 3uog_A          181 LVEKGHLRAGDRVVVQG-TGGVALFGLQIAKATGAEVIVTSSSRE----KLDRAFALGADHGINRLEEDWVERVYALTGD  255 (363)
T ss_dssp             HTTTTCCCTTCEEEEES-SBHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHTCSEEEETTTSCHHHHHHHHHTT
T ss_pred             HHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEecCch----hHHHHHHcCCCEEEcCCcccHHHHHHHHhCC
Confidence            45678899999999999 559999999999999999999887765    6888999999999874  35677 8888888


Q ss_pred             CCCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHH
Q psy2961          79 PKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTE  158 (202)
Q Consensus        79 ~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  158 (202)
                      .++|++|||+|++.+..++++++++|+++.+|........++...++.+++++.|+....           .+.++++++
T Consensus       256 ~g~D~vid~~g~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~-----------~~~~~~~~~  324 (363)
T 3uog_A          256 RGADHILEIAGGAGLGQSLKAVAPDGRISVIGVLEGFEVSGPVGPLLLKSPVVQGISVGH-----------RRALEDLVG  324 (363)
T ss_dssp             CCEEEEEEETTSSCHHHHHHHEEEEEEEEEECCCSSCEECCBTTHHHHTCCEEEECCCCC-----------HHHHHHHHH
T ss_pred             CCceEEEECCChHHHHHHHHHhhcCCEEEEEecCCCcccCcCHHHHHhCCcEEEEEecCC-----------HHHHHHHHH
Confidence            899999999998888889999999999999997665445677777889999999987553           456889999


Q ss_pred             HHHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         159 MMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       159 ~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      ++++|++++.++++|+++++++||+.+.  +++ .||+||+|
T Consensus       325 l~~~g~l~~~i~~~~~l~~~~~A~~~~~--~~~-~gKvvi~~  363 (363)
T 3uog_A          325 AVDRLGLKPVIDMRYKFTEVPEALAHLD--RGP-FGKVVIEF  363 (363)
T ss_dssp             HHHHHTCCCCEEEEEEGGGHHHHHHTGG--GCC-SBEEEEEC
T ss_pred             HHHcCCCccceeeEEcHHHHHHHHHHHH--cCC-CccEEEeC
Confidence            9999999999999999999999999998  778 89999985

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=99.97  E-value=2.3e-30  Score=200.65  Aligned_cols=191  Identities=20%  Similarity=0.289  Sum_probs=161.1

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeCh--hHHHh-HHHhhCC
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE--EELRN-ISRDASI   78 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~--~~~~~-~~~~~~~   78 (202)
                      |.+.+++++|++|||+|++|++|++++|+|+..|++|++++++++    +++.++++|++.++++  .++.+ +.+.+ +
T Consensus       159 l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~----~~~~~~~lGa~~~~~~~~~~~~~~~~~~~-~  233 (353)
T 4dup_A          159 LFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTG----KCEACERLGAKRGINYRSEDFAAVIKAET-G  233 (353)
T ss_dssp             HTTTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHH----HHHHHHHHTCSEEEETTTSCHHHHHHHHH-S
T ss_pred             HHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHhcCCCEEEeCCchHHHHHHHHHh-C
Confidence            456788999999999998889999999999999999999988776    6889999999999875  45666 77777 6


Q ss_pred             CCCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcC-CCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHH
Q psy2961          79 PKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQ-IPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELT  157 (202)
Q Consensus        79 ~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  157 (202)
                      .++|++|||+|++.+...+++++++|+++.+|...+.... ++...++.+++++.|+....+..... +....+.+++++
T Consensus       234 ~g~Dvvid~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~-~~~~~~~~~~~~  312 (353)
T 4dup_A          234 QGVDIILDMIGAAYFERNIASLAKDGCLSIIAFLGGAVAEKVNLSPIMVKRLTVTGSTMRPRTAEEK-RAIRDDLLSEVW  312 (353)
T ss_dssp             SCEEEEEESCCGGGHHHHHHTEEEEEEEEECCCTTCSEEEEEECHHHHHTTCEEEECCSTTSCHHHH-HHHHHHHHHHTH
T ss_pred             CCceEEEECCCHHHHHHHHHHhccCCEEEEEEecCCCcccCCCHHHHHhcCceEEEEeccccchhhh-HHHHHHHHHHHH
Confidence            7999999999998888899999999999999976654433 66677888999999988765433211 133455688999


Q ss_pred             HHHHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         158 EMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       158 ~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      +++++|++++.++++|+++++++||+.+.  +++..||+|+++
T Consensus       313 ~l~~~g~l~~~i~~~~~l~~~~~A~~~l~--~~~~~gKvvl~~  353 (353)
T 4dup_A          313 PLLEAGTVAPVIHKVFAFEDVADAHRLLE--EGSHVGKVMLTV  353 (353)
T ss_dssp             HHHHHTSSCCCEEEEEEGGGHHHHHHHHH--HTCCSSEEEEEC
T ss_pred             HHHHCCCccCCcceEEeHHHHHHHHHHHH--hCCCCceEEEeC
Confidence            99999999999999999999999999999  888899999975

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=99.97  E-value=4.7e-30  Score=196.91  Aligned_cols=190  Identities=18%  Similarity=0.258  Sum_probs=159.8

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeCh--hHHHh-HHHhhCC
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE--EELRN-ISRDASI   78 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~--~~~~~-~~~~~~~   78 (202)
                      +.+.+++++|++|||+|++|++|++++|+|+..|++|++++++++    +++.++++|++.++++  .++.+ +.+.+++
T Consensus       132 l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~----~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~  207 (325)
T 3jyn_A          132 LRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPE----KAAHAKALGAWETIDYSHEDVAKRVLELTDG  207 (325)
T ss_dssp             HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHH----HHHHHHHHTCSEEEETTTSCHHHHHHHHTTT
T ss_pred             HHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHcCCCEEEeCCCccHHHHHHHHhCC
Confidence            456678999999999998889999999999999999999988765    6889999999999875  45666 8888887


Q ss_pred             CCCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCccccccc-CeeEEEEechhHhhhcccHHHHHHHHHHHH
Q psy2961          79 PKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFK-DITLRGHWMTRWQKENKESAERKSMMNELT  157 (202)
Q Consensus        79 ~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  157 (202)
                      .++|++|||+|++.+..++++++++|+++.+|...+....++...++.+ .+.+.+..+..+..   .+....+.+++++
T Consensus       208 ~g~Dvvid~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  284 (325)
T 3jyn_A          208 KKCPVVYDGVGQDTWLTSLDSVAPRGLVVSFGNASGPVSGVNLGILAQKDSVYVTRPTLGSYAN---NAQNLQTMADELF  284 (325)
T ss_dssp             CCEEEEEESSCGGGHHHHHTTEEEEEEEEECCCTTCCCCSCCTHHHHHTTSCEEECCCHHHHSC---STTHHHHHHHHHH
T ss_pred             CCceEEEECCChHHHHHHHHHhcCCCEEEEEecCCCCCCCCCHHHHhhcCcEEEEeeeeeeecC---CHHHHHHHHHHHH
Confidence            8999999999998877899999999999999976554335666666666 56777666555532   1256678889999


Q ss_pred             HHHHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         158 EMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       158 ~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      +++++|++++.++++|+++++++||+.+.  +++..||+|+.+
T Consensus       285 ~l~~~g~l~~~i~~~~~l~~~~~A~~~~~--~~~~~Gkvvl~p  325 (325)
T 3jyn_A          285 DMLASGKLKVDGIEQYALKDAAKAQIELS--ARRTTGSTILIP  325 (325)
T ss_dssp             HHHHTTSSCCCCCEEEEGGGHHHHHHHHH--TTCCCSCEEEEC
T ss_pred             HHHHCCCeeCccccEEcHHHHHHHHHHHH--cCCCCceEEEeC
Confidence            99999999999999999999999999999  889999999863

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=99.97  E-value=4.3e-30  Score=200.01  Aligned_cols=195  Identities=38%  Similarity=0.604  Sum_probs=158.8

Q ss_pred             cccccCCCCC-CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChh-----HHHh-HHH
Q psy2961           2 LKDYNSLSPG-DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE-----ELRN-ISR   74 (202)
Q Consensus         2 l~~~~~~~~g-~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~-----~~~~-~~~   74 (202)
                      |.+.+++++| ++|||+|++|++|++++|+|+..|+++|+++++.++..++++.++++|+++++++.     ++.+ +++
T Consensus       158 l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~i~~  237 (364)
T 1gu7_A          158 LTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKE  237 (364)
T ss_dssp             HHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHH
T ss_pred             HHHhhccCCCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHHhcCCeEEEecCccchHHHHHHHHH
Confidence            3445689999 99999999889999999999999999999987766433346778999999999864     3455 777


Q ss_pred             hh--CCCCCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHH
Q psy2961          75 DA--SIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSM  152 (202)
Q Consensus        75 ~~--~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  152 (202)
                      .+  ++.++|+||||+|++.....+++++++|+++.+|........++...++.+++++.|++...+....  +....+.
T Consensus       238 ~t~~~~~g~Dvvid~~G~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~  315 (364)
T 1gu7_A          238 WIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWVTELLKNN--KELKTST  315 (364)
T ss_dssp             HHHHHTCCEEEEEESSCHHHHHHHHHTSCTTCEEEECCCCSSCCEEECHHHHHHSCCEEEECCHHHHHTTC--HHHHHHH
T ss_pred             HhhccCCCceEEEECCCchhHHHHHHHhccCCEEEEecCCCCCCcccCHHHHhhcCcEEEEEchhHhcccC--HHHHHHH
Confidence            76  5678999999999988878899999999999999665444455655677899999998876654433  2445678


Q ss_pred             HHHHHHHHHcCCCCCCcceeechh---hHHHHHHHHhhhcCCCCceEEEee
Q psy2961         153 MNELTEMMRTGKLAAPAHKFVTLK---NFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       153 ~~~~~~~~~~g~~~~~~~~~~~~~---~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      ++++++++++|++++.+..+++++   ++++||+.+.  +++..||+|+++
T Consensus       316 ~~~~~~l~~~g~l~~~~~~~~~~~~l~~~~~A~~~~~--~~~~~gKvvv~~  364 (364)
T 1gu7_A          316 LNQIIAWYEEGKLTDAKSIETLYDGTKPLHELYQDGV--ANSKDGKQLITY  364 (364)
T ss_dssp             HHHHHHHHHHTCCCCCCCEEEECCSSSCHHHHHHHHH--HTGGGSCEEEEC
T ss_pred             HHHHHHHHHcCCcccccceEEecCchhhHHHHHHHHH--hCCCCceEEEeC
Confidence            999999999999998776777665   9999999998  777789999975

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=99.97  E-value=4.6e-29  Score=192.92  Aligned_cols=191  Identities=16%  Similarity=0.239  Sum_probs=156.2

Q ss_pred             cccccCCC------CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChh-HHHh-HH
Q psy2961           2 LKDYNSLS------PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE-ELRN-IS   73 (202)
Q Consensus         2 l~~~~~~~------~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~-~~~~-~~   73 (202)
                      |.+.++++      +|++|||+|++|++|++++|+|+..|++|++++++++    +++.++++|++.++++. ++.+ ++
T Consensus       136 l~~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~----~~~~~~~lGa~~vi~~~~~~~~~~~  211 (346)
T 3fbg_A          136 LFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNE----TIEWTKKMGADIVLNHKESLLNQFK  211 (346)
T ss_dssp             HHTTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHH----HHHHHHHHTCSEEECTTSCHHHHHH
T ss_pred             HHHhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHhcCCcEEEECCccHHHHHH
Confidence            34567777      9999999988889999999999999999999887765    68999999999999864 4556 76


Q ss_pred             HhhCCCCCeEEEecCCCchH-HHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhc-ccHHHHHH
Q psy2961          74 RDASIPKPKLALNCVGGNSA-TNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKEN-KESAERKS  151 (202)
Q Consensus        74 ~~~~~~~~d~vid~~g~~~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~  151 (202)
                      +. .+.++|++|||+|++.. ..++++|+++|+++.++..   ...++...+..+++++.++......... .......+
T Consensus       212 ~~-~~~g~Dvv~d~~g~~~~~~~~~~~l~~~G~iv~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (346)
T 3fbg_A          212 TQ-GIELVDYVFCTFNTDMYYDDMIQLVKPRGHIATIVAF---ENDQDLNALKPKSLSFSHEFMFARPLNQTDDMIKHHE  287 (346)
T ss_dssp             HH-TCCCEEEEEESSCHHHHHHHHHHHEEEEEEEEESSCC---SSCBCGGGGTTTTCEEEECCTTHHHHTTCTTTHHHHH
T ss_pred             Hh-CCCCccEEEECCCchHHHHHHHHHhccCCEEEEECCC---CCCCccccccccceEEEEEEEecccccchhhHHHHHH
Confidence            66 56789999999998775 5689999999999988742   2345666777899999987765432221 12255678


Q ss_pred             HHHHHHHHHHcCCCCCCcceee---chhhHHHHHHHHhhhcCCCCceEEEeecC
Q psy2961         152 MMNELTEMMRTGKLAAPAHKFV---TLKNFQEALMNTMSIQGKSGVKYYIDFRQ  202 (202)
Q Consensus       152 ~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~~gkvv~~~~~  202 (202)
                      .++++.+++++|++++.++++|   +++++++||+.+.  +++..||+|+++++
T Consensus       288 ~~~~~~~l~~~g~l~~~i~~~~~~~~l~~~~~A~~~~~--~g~~~GKvvl~~~~  339 (346)
T 3fbg_A          288 YLEDITNKVEQNIYQPTTTKVIEGLTTENIYQAHQILE--SNTMIGKLVINLNE  339 (346)
T ss_dssp             HHHHHHHHHHTTSSCCCEEEEEESCCHHHHHHHHHHHH--TTCCCSEEEEEC--
T ss_pred             HHHHHHHHHHCCCEECCccceecCCCHHHHHHHHHHHh--cCCcceEEEEecCC
Confidence            8999999999999999988887   9999999999999  89999999999863

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=99.97  E-value=3.4e-29  Score=193.40  Aligned_cols=189  Identities=20%  Similarity=0.250  Sum_probs=156.3

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhCCCC
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPK   80 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~~~~   80 (202)
                      |.+.+++++|++|||+|++|++|++++|+|+..|++|+++ .+++    +++.++++|++.+.+..++.+ +.+.+.+.+
T Consensus       142 l~~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~----~~~~~~~lGa~~i~~~~~~~~~~~~~~~~~g  216 (343)
T 3gaz_A          142 LVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGS----DLEYVRDLGATPIDASREPEDYAAEHTAGQG  216 (343)
T ss_dssp             HTTTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHH----HHHHHHHHTSEEEETTSCHHHHHHHHHTTSC
T ss_pred             HHHhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHH----HHHHHHHcCCCEeccCCCHHHHHHHHhcCCC
Confidence            4567889999999999988899999999999999998888 5554    688899999998433455667 888888889


Q ss_pred             CeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHH
Q psy2961          81 PKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMM  160 (202)
Q Consensus        81 ~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (202)
                      +|++|||+|++.+..++++|+++|+++.+|...    .++...++.+++++.++...........+....+.++++++++
T Consensus       217 ~D~vid~~g~~~~~~~~~~l~~~G~iv~~g~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~  292 (343)
T 3gaz_A          217 FDLVYDTLGGPVLDASFSAVKRFGHVVSCLGWG----THKLAPLSFKQATYSGVFTLHTLLANEGLAHFGEMLREADALV  292 (343)
T ss_dssp             EEEEEESSCTHHHHHHHHHEEEEEEEEESCCCS----CCCCHHHHHTTCEEEECCTTHHHHHTCSHHHHHHHHHHHHHHH
T ss_pred             ceEEEECCCcHHHHHHHHHHhcCCeEEEEcccC----ccccchhhhcCcEEEEEEeccchhcccchHHHHHHHHHHHHHH
Confidence            999999999987778999999999999998554    3455667789999999876533222223355678899999999


Q ss_pred             HcCCCCCCcc-eeechhhHHHHHHHHhhhcCCC----CceEEEeec
Q psy2961         161 RTGKLAAPAH-KFVTLKNFQEALMNTMSIQGKS----GVKYYIDFR  201 (202)
Q Consensus       161 ~~g~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~----~gkvv~~~~  201 (202)
                      ++|++++.++ ++|+++++++||+.+.  +++.    .||+|++++
T Consensus       293 ~~g~l~~~i~~~~~~l~~~~~A~~~~~--~~~~~Gr~~GK~v~~~~  336 (343)
T 3gaz_A          293 QTGKLAPRLDPRTFSIAEIGSAYDAVL--GRNDVPRQRGKIAITVE  336 (343)
T ss_dssp             HTTCCCCCBCSCCEETTCHHHHHHHHH--TCTTCCCCSSBCEEECC
T ss_pred             HCCCcccCccCcEecHHHHHHHHHHHH--cCCCcccccceEEEEec
Confidence            9999999988 7999999999999998  6544    789999875

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=99.96  E-value=3.3e-29  Score=200.20  Aligned_cols=179  Identities=14%  Similarity=0.150  Sum_probs=152.9

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhH-----------------
Q psy2961           6 NSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE-----------------   68 (202)
Q Consensus         6 ~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~-----------------   68 (202)
                      +++++|++|||+|++|++|++++|+|+..|+++++++++++    +++.++++|++.++++.+                 
T Consensus       224 ~~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~----~~~~~~~lGa~~vi~~~~~d~~~~~~~~~~~~~~~  299 (456)
T 3krt_A          224 AGMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQ----KAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKEW  299 (456)
T ss_dssp             TCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHH----HHHHHHHHTCCEEEETTTTTCCSEEETTEECHHHH
T ss_pred             cCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHH----HHHHHHhhCCcEEEecCcCcccccccccccchHHH
Confidence            78999999999999889999999999999999999887665    789999999999987532                 


Q ss_pred             --HHh-HHHhhCCCCCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhccc
Q psy2961          69 --LRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKE  145 (202)
Q Consensus        69 --~~~-~~~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  145 (202)
                        +.+ +++.+++.++|+||||+|++.+..++++++++|+++.+|...+....++...++.+.+++.|+....+      
T Consensus       300 ~~~~~~i~~~t~g~g~Dvvid~~G~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~------  373 (456)
T 3krt_A          300 KRFGKRIRELTGGEDIDIVFEHPGRETFGASVFVTRKGGTITTCASTSGYMHEYDNRYLWMSLKRIIGSHFANY------  373 (456)
T ss_dssp             HHHHHHHHHHHTSCCEEEEEECSCHHHHHHHHHHEEEEEEEEESCCTTCSEEEEEHHHHHHTTCEEEECCSCCH------
T ss_pred             HHHHHHHHHHhCCCCCcEEEEcCCchhHHHHHHHhhCCcEEEEEecCCCcccccCHHHHHhcCeEEEEeccCCH------
Confidence              235 88888888999999999997777799999999999999976654445566667788899999876542      


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEeec
Q psy2961         146 SAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  201 (202)
Q Consensus       146 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~~  201 (202)
                           +.+.++++++++|++++.++++|+++++++||+.+.  +++..||+||.+.
T Consensus       374 -----~~~~~~~~l~~~g~l~~~i~~~~~l~~~~eA~~~l~--~~~~~GKvvv~~~  422 (456)
T 3krt_A          374 -----REAWEANRLIAKGRIHPTLSKVYSLEDTGQAAYDVH--RNLHQGKVGVLCL  422 (456)
T ss_dssp             -----HHHHHHHHHHHTTSSCCCEEEEEEGGGHHHHHHHHH--TTCSSSEEEEESS
T ss_pred             -----HHHHHHHHHHHcCCcccceeEEEcHHHHHHHHHHHH--hCCCCCcEEEEeC
Confidence                 235578999999999999999999999999999999  8888999998763

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=99.96  E-value=9.1e-30  Score=197.10  Aligned_cols=183  Identities=20%  Similarity=0.382  Sum_probs=154.6

Q ss_pred             CCC-CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeCh--hHHHh-HHHhhCCCCCeEE
Q psy2961           9 SPG-DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE--EELRN-ISRDASIPKPKLA   84 (202)
Q Consensus         9 ~~g-~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~--~~~~~-~~~~~~~~~~d~v   84 (202)
                      ++| ++|+|+|++|++|++++|+|+..|++|++++++++    +++.++++|++.++++  .++.+ +.+.+++.++|++
T Consensus       162 ~~g~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~----~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~~~g~D~v  237 (349)
T 3pi7_A          162 QEGEKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDE----QIALLKDIGAAHVLNEKAPDFEATLREVMKAEQPRIF  237 (349)
T ss_dssp             HHCCSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGG----GHHHHHHHTCSEEEETTSTTHHHHHHHHHHHHCCCEE
T ss_pred             hCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHcCCCEEEECCcHHHHHHHHHHhcCCCCcEE
Confidence            556 79999999999999999999999999999998876    5788999999999975  45666 8887776789999


Q ss_pred             EecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCc-ccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHHHcC
Q psy2961          85 LNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPT-SAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTG  163 (202)
Q Consensus        85 id~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  163 (202)
                      |||+|++.+..++++++++|+++.+|........++. ..++.+++++.|++...|....+  ....+.++++.+++++|
T Consensus       238 id~~g~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~--~~~~~~~~~~~~l~~~g  315 (349)
T 3pi7_A          238 LDAVTGPLASAIFNAMPKRARWIIYGRLDPDATVIREPGQLIFQHKHIEGFWLSEWMRQFK--ERRGPAILEAQKRFSDG  315 (349)
T ss_dssp             EESSCHHHHHHHHHHSCTTCEEEECCCSCCSCCCCSCTHHHHHSCCEEEECCHHHHHHHTH--HHHHHHHHHC-CTTTTS
T ss_pred             EECCCChhHHHHHhhhcCCCEEEEEeccCCCCCCCCchhhhhccccEEEEEEehhhhhhCc--HHHHHHHHHHHHHHHcC
Confidence            9999999887899999999999999976665556666 77888999999999877765443  45678899999999999


Q ss_pred             CCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         164 KLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      ++++.++++|+++++++||+.+.   +...||+||++
T Consensus       316 ~l~~~i~~~~~l~~~~~A~~~~~---~~~~gKvvl~p  349 (349)
T 3pi7_A          316 RWSTDVTAVVPLAEAIAWVPAEL---TKPNGKVFIRP  349 (349)
T ss_dssp             SCCC-CCEEEEHHHHHHHHHHHH---TSSSSCEEEEC
T ss_pred             CcccccceEEcHHHHHHHHHHHh---CCCCceEEEeC
Confidence            99999999999999999999544   44678999974

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=99.96  E-value=1.1e-28  Score=190.39  Aligned_cols=191  Identities=19%  Similarity=0.268  Sum_probs=155.5

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeCh--hHHHh-HHHhhCC
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE--EELRN-ISRDASI   78 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~--~~~~~-~~~~~~~   78 (202)
                      +.+.+++++|++|||+|++|++|++++|+|+..|++|++++++++    +++.++++|++.++++  .++.+ +.+.+++
T Consensus       136 ~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~----~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~  211 (340)
T 3gms_A          136 CTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNK----HTEELLRLGAAYVIDTSTAPLYETVMELTNG  211 (340)
T ss_dssp             HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSST----THHHHHHHTCSEEEETTTSCHHHHHHHHTTT
T ss_pred             HHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHhCCCcEEEeCCcccHHHHHHHHhCC
Confidence            456788999999999999999999999999999999999998877    5788999999999875  45666 8888887


Q ss_pred             CCCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCccccc-ccCeeEEEEechhHhhhcccHHHHHHHHHHHH
Q psy2961          79 PKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFI-FKDITLRGHWMTRWQKENKESAERKSMMNELT  157 (202)
Q Consensus        79 ~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  157 (202)
                      .++|++|||+|++.....+++|+++|+++.+|.....  .++...+. ...+.+..+....+..... +....+.+++++
T Consensus       212 ~g~Dvvid~~g~~~~~~~~~~l~~~G~iv~~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  288 (340)
T 3gms_A          212 IGADAAIDSIGGPDGNELAFSLRPNGHFLTIGLLSGI--QVNWAEIVTKAKVHANIFHLRHWNDEVS-PYKWQETFRHLI  288 (340)
T ss_dssp             SCEEEEEESSCHHHHHHHHHTEEEEEEEEECCCTTSC--CCCHHHHHHTSCCEEEECCHHHHHHHSC-HHHHHHHHHHHH
T ss_pred             CCCcEEEECCCChhHHHHHHHhcCCCEEEEEeecCCC--CCCHHHhhhcccceEEEEEehhhhhhcC-HHHHHHHHHHHH
Confidence            8999999999999888888999999999999965543  23332232 2456666666555443221 245578899999


Q ss_pred             HHHHcCCCCC-CcceeechhhHHHHHHHHhhhcCC-CCceEEEeec
Q psy2961         158 EMMRTGKLAA-PAHKFVTLKNFQEALMNTMSIQGK-SGVKYYIDFR  201 (202)
Q Consensus       158 ~~~~~g~~~~-~~~~~~~~~~~~~a~~~~~~~~~~-~~gkvv~~~~  201 (202)
                      +++++|++++ .++++|+++++++||+.+.  +++ ..||+++++.
T Consensus       289 ~l~~~g~l~~~~i~~~~~l~~~~~A~~~~~--~~~~~~GKvvl~~~  332 (340)
T 3gms_A          289 RLVENEQLRFMKVHSTYELADVKAAVDVVQ--SAEKTKGKVFLTSY  332 (340)
T ss_dssp             HHHHTTSSCCCCEEEEEEGGGHHHHHHHHH--CTTCCSSEEEEECC
T ss_pred             HHHHcCCCccccccEEEeHHHHHHHHHHHH--hcCCCCCeEEEEEe
Confidence            9999999998 4789999999999999999  776 4599999875

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=99.96  E-value=1.4e-28  Score=189.57  Aligned_cols=186  Identities=22%  Similarity=0.321  Sum_probs=156.6

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHH-HhcCCceEeCh--hHHHh-HHHhhC
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGADYVFTE--EELRN-ISRDAS   77 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~v~~~--~~~~~-~~~~~~   77 (202)
                      |.+.+++++|++|||+|++|++|++++|+|+..|++|++++++++    +.+.+ +++|++.++++  .++.+ +.+.+ 
T Consensus       141 l~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-  215 (336)
T 4b7c_A          141 LLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAE----KCRFLVEELGFDGAIDYKNEDLAAGLKREC-  215 (336)
T ss_dssp             HHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHH----HHHHHHHTTCCSEEEETTTSCHHHHHHHHC-
T ss_pred             HHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHcCCCEEEECCCHHHHHHHHHhc-
Confidence            446788999999999999889999999999999999999987775    67888 89999998875  35666 77776 


Q ss_pred             CCCCeEEEecCCCchHHHHHHhcccCcEEEEEeccCC----C--CcCCCcccccccCeeEEEEechhHhhhcccHHHHHH
Q psy2961          78 IPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSR----E--PVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKS  151 (202)
Q Consensus        78 ~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~----~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  151 (202)
                      +.++|++|||+|++.+..++++++++|+++.+|....    .  ...++...++.+++++.|+....+..      ...+
T Consensus       216 ~~~~d~vi~~~g~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~------~~~~  289 (336)
T 4b7c_A          216 PKGIDVFFDNVGGEILDTVLTRIAFKARIVLCGAISQYNNKEAVRGPANYLSLLVNRARMEGMVVMDYAQ------RFPE  289 (336)
T ss_dssp             TTCEEEEEESSCHHHHHHHHTTEEEEEEEEECCCGGGGC------CCTTTTHHHHTTCEEEECCGGGGGG------GHHH
T ss_pred             CCCceEEEECCCcchHHHHHHHHhhCCEEEEEeecccccCCcccccchhHHHHHhCCcEEEEEEhhhhhh------hhHH
Confidence            4689999999998777779999999999999986552    1  12455566788999999998766532      2457


Q ss_pred             HHHHHHHHHHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         152 MMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       152 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      .++++++++++|++++.+..+++++++++||+.+.  +++..||+|+++
T Consensus       290 ~~~~~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~--~~~~~gKvvi~~  336 (336)
T 4b7c_A          290 GLKEMATWLAEGKLQSREDIVEGLETFPETLLKLF--SGENFGKLVLKV  336 (336)
T ss_dssp             HHHHHHHHHHTTSSCCCEEEEECGGGHHHHHHHHH--TTCCCSEEEEEC
T ss_pred             HHHHHHHHHHCCCcccceeeecCHHHHHHHHHHHH--cCCCCceEEEeC
Confidence            79999999999999999888899999999999999  888899999975

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=99.96  E-value=8.7e-29  Score=191.59  Aligned_cols=191  Identities=15%  Similarity=0.210  Sum_probs=148.4

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCC-CcEEEEecCcccHHHHHHHHHhcCCceEeCh-hHHHh-HHHhhCC
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWG-LKTINIVRNRDDIDKLKSYLKSLGADYVFTE-EELRN-ISRDASI   78 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g-~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~-~~~~~-~~~~~~~   78 (202)
                      |.+.+++++|++|||+|++|++|++++|+|+..| ++|++++ +++    +.+.++ +|++.+++. .++.+ +++.+ +
T Consensus       134 l~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~----~~~~~~-~ga~~~~~~~~~~~~~~~~~~-~  206 (349)
T 4a27_A          134 LFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STF----KHEAIK-DSVTHLFDRNADYVQEVKRIS-A  206 (349)
T ss_dssp             HHTTSCCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGG----GHHHHG-GGSSEEEETTSCHHHHHHHHC-T
T ss_pred             HHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHH----HHHHHH-cCCcEEEcCCccHHHHHHHhc-C
Confidence            4567889999999999998899999999999996 5777766 443    467777 999998863 45666 77765 4


Q ss_pred             CCCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCC----------------cCCCcccccccCeeEEEEechhHhhh
Q psy2961          79 PKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREP----------------VQIPTSAFIFKDITLRGHWMTRWQKE  142 (202)
Q Consensus        79 ~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~----------------~~~~~~~~~~~~~~~~g~~~~~~~~~  142 (202)
                      .++|++|||+|++.+..++++++++|+++.+|......                ..++...++.+++++.++....+...
T Consensus       207 ~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~g~~~~~~~~~  286 (349)
T 4a27_A          207 EGVDIVLDCLCGDNTGKGLSLLKPLGTYILYGSSNMVTGETKSFFSFAKSWWQVEKVNPIKLYEENKVIAGFSLLNLLFK  286 (349)
T ss_dssp             TCEEEEEEECC-------CTTEEEEEEEEEEC-------------------------CHHHHHHHTCEEEEECHHHHHHT
T ss_pred             CCceEEEECCCchhHHHHHHHhhcCCEEEEECCCcccccccccccccccccccccccCHHHHhhcCceEEEEeehheecc
Confidence            68999999999988877899999999999998643211                12344556788999999988776665


Q ss_pred             cccHHHHHHHHHHHHHHHHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEeec
Q psy2961         143 NKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  201 (202)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~~  201 (202)
                      ........+.++++++++++|++++.++++|+++++++||+.+.  +++..||+|++++
T Consensus       287 ~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~l~--~~~~~GKvvi~~~  343 (349)
T 4a27_A          287 QGRAGLIRGVVEKLIGLYNQKKIKPVVDSLWALEEVKEAMQRIH--DRGNIGKLILDVE  343 (349)
T ss_dssp             SCCHHHHHHHHHHHHHHHHTTSCCCCEEEEECGGGHHHHHHHHH--TTCCSSEEEEETT
T ss_pred             ccchHHHHHHHHHHHHHHHCCCccccccceECHHHHHHHHHHHH--hCCCCceEEEecC
Confidence            55445668899999999999999999999999999999999999  8888999999986

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=99.96  E-value=2.3e-28  Score=188.10  Aligned_cols=191  Identities=16%  Similarity=0.201  Sum_probs=157.1

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeCh--hHHHh-HHHhhCC
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE--EELRN-ISRDASI   78 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~--~~~~~-~~~~~~~   78 (202)
                      |.+.+++++|++|||+|++|++|++++|+++..|++|++++++++    +.+.++++|++.++++  .++.+ +.+.+.+
T Consensus       137 l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~----~~~~~~~~g~~~~~d~~~~~~~~~i~~~~~~  212 (333)
T 1wly_A          137 LHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEE----KAETARKLGCHHTINYSTQDFAEVVREITGG  212 (333)
T ss_dssp             HHTTSCCCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHH----HHHHHHHHTCSEEEETTTSCHHHHHHHHHTT
T ss_pred             HHHhhCCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHcCCCEEEECCCHHHHHHHHHHhCC
Confidence            345678999999999999889999999999999999999888765    5788888999988864  34555 7777766


Q ss_pred             CCCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcc-cccccC--eeEEEEechhHhhhcccHHHHHHHHHH
Q psy2961          79 PKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTS-AFIFKD--ITLRGHWMTRWQKENKESAERKSMMNE  155 (202)
Q Consensus        79 ~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~-~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~  155 (202)
                      .++|++|||+|+..+..++++++++|+++.+|...+....++.. .++.++  +++.|++...+    ..+....+.+++
T Consensus       213 ~~~d~vi~~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~----~~~~~~~~~~~~  288 (333)
T 1wly_A          213 KGVDVVYDSIGKDTLQKSLDCLRPRGMCAAYGHASGVADPIRVVEDLGVRGSLFITRPALWHYM----SNRSEIDEGSKC  288 (333)
T ss_dssp             CCEEEEEECSCTTTHHHHHHTEEEEEEEEECCCTTCCCCCCCHHHHTTTTTSCEEECCCGGGGS----CSHHHHHHHHHH
T ss_pred             CCCeEEEECCcHHHHHHHHHhhccCCEEEEEecCCCCcCCCChhHhhhhcCCcEEEEEeehhhc----cCHHHHHHHHHH
Confidence            78999999999977777999999999999999665433445555 677888  89988754221    122445678999


Q ss_pred             HHHHHHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEeecC
Q psy2961         156 LTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFRQ  202 (202)
Q Consensus       156 ~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~~~  202 (202)
                      +++++.+|++++.++++|+++++++||+.+.  +++..||+|+++++
T Consensus       289 ~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~--~~~~~gKvvi~~~~  333 (333)
T 1wly_A          289 LFDAVKAGVLHSSVAKTFPLREAAAAHKYMG--GRQTIGSIVLLPQA  333 (333)
T ss_dssp             HHHHHHTTSCCCCEEEEEEGGGHHHHHHHHH--HCSCCSEEEEETTC
T ss_pred             HHHHHHCCCcCCCcceEEeHHHHHHHHHHHH--cCCCceEEEEEeCC
Confidence            9999999999998999999999999999998  77778999998763

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=99.96  E-value=1.8e-28  Score=189.60  Aligned_cols=176  Identities=16%  Similarity=0.177  Sum_probs=149.7

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHC-CCcEEEEecCcccHHHHHHHHHhcCCceEeCh-hHHHh-HHHhhCCCCC
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVFTE-EELRN-ISRDASIPKP   81 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~-g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~-~~~~~-~~~~~~~~~~   81 (202)
                      ..++++|++|+|+|+ |++|++++|+|+.. |++|+++.++++    +++.++++|++.++++ +++.+ +++.+++.++
T Consensus       166 ~~~~~~g~~vlv~Ga-G~vG~~a~qla~~~g~~~Vi~~~~~~~----~~~~~~~lGa~~~i~~~~~~~~~v~~~t~g~g~  240 (345)
T 3jv7_A          166 LPLLGPGSTAVVIGV-GGLGHVGIQILRAVSAARVIAVDLDDD----RLALAREVGADAAVKSGAGAADAIRELTGGQGA  240 (345)
T ss_dssp             GGGCCTTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESCHH----HHHHHHHTTCSEEEECSTTHHHHHHHHHGGGCE
T ss_pred             ccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHH----HHHHHHHcCCCEEEcCCCcHHHHHHHHhCCCCC
Confidence            347899999999998 59999999999999 678888877765    7899999999999975 35666 8888887899


Q ss_pred             eEEEecCCCc-hHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHH
Q psy2961          82 KLALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMM  160 (202)
Q Consensus        82 d~vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (202)
                      |++|||+|++ .+..++++|+++|+++.+|........++. .++.+++++.++....           .+.++++++++
T Consensus       241 d~v~d~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~-~~~~~~~~i~g~~~~~-----------~~~~~~~~~l~  308 (345)
T 3jv7_A          241 TAVFDFVGAQSTIDTAQQVVAVDGHISVVGIHAGAHAKVGF-FMIPFGASVVTPYWGT-----------RSELMEVVALA  308 (345)
T ss_dssp             EEEEESSCCHHHHHHHHHHEEEEEEEEECSCCTTCCEEEST-TTSCTTCEEECCCSCC-----------HHHHHHHHHHH
T ss_pred             eEEEECCCCHHHHHHHHHHHhcCCEEEEECCCCCCCCCcCH-HHHhCCCEEEEEecCC-----------HHHHHHHHHHH
Confidence            9999999998 556699999999999999966553445554 7788999999987543           35688999999


Q ss_pred             HcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         161 RTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       161 ~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      ++|++++ ++++|+++++++||+.+.  +++..||+||++
T Consensus       309 ~~g~l~~-~~~~~~l~~~~~A~~~~~--~~~~~Gkvvv~p  345 (345)
T 3jv7_A          309 RAGRLDI-HTETFTLDEGPAAYRRLR--EGSIRGRGVVVP  345 (345)
T ss_dssp             HTTCCCC-CEEEECSTTHHHHHHHHH--HTCCSSEEEECC
T ss_pred             HcCCCce-EEEEEcHHHHHHHHHHHH--cCCCceeEEeCC
Confidence            9999998 568999999999999999  888899999974

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=99.96  E-value=4.1e-28  Score=193.53  Aligned_cols=179  Identities=17%  Similarity=0.197  Sum_probs=151.8

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHH---------------
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEEL---------------   69 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~---------------   69 (202)
                      .+++++|++|||+|++|++|++++|+|+..|+++++++++++    +++.++++|++.++++.+.               
T Consensus       215 ~~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~----~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~~~  290 (447)
T 4a0s_A          215 GAQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQ----KEAAVRALGCDLVINRAELGITDDIADDPRRVVE  290 (447)
T ss_dssp             TTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHH----HHHHHHHTTCCCEEEHHHHTCCTTGGGCHHHHHH
T ss_pred             ccCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHhcCCCEEEecccccccccccccccccch
Confidence            478999999999999889999999999999999999887665    6889999999999875332               


Q ss_pred             -----Hh-HHHhhCCCCCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhc
Q psy2961          70 -----RN-ISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKEN  143 (202)
Q Consensus        70 -----~~-~~~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  143 (202)
                           .+ +.+.+ +.++|++||++|++.+...+++++++|+++.+|...+....++...++.+++++.|+....     
T Consensus       291 ~~~~~~~~v~~~~-g~g~Dvvid~~G~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~-----  364 (447)
T 4a0s_A          291 TGRKLAKLVVEKA-GREPDIVFEHTGRVTFGLSVIVARRGGTVVTCGSSSGYLHTFDNRYLWMKLKKIVGSHGAN-----  364 (447)
T ss_dssp             HHHHHHHHHHHHH-SSCCSEEEECSCHHHHHHHHHHSCTTCEEEESCCTTCSEEEEEHHHHHHTTCEEEECCSCC-----
T ss_pred             hhhHHHHHHHHHh-CCCceEEEECCCchHHHHHHHHHhcCCEEEEEecCCCcccccCHHHHHhCCCEEEecCCCC-----
Confidence                 45 77777 6789999999999877778999999999999996655444555666778899999987553     


Q ss_pred             ccHHHHHHHHHHHHHHHHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEeec
Q psy2961         144 KESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  201 (202)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~~  201 (202)
                            .+.+.++++++++|++++.++++|+++++++||+.+.  +++..||+||.+.
T Consensus       365 ------~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~--~~~~~GKvvv~~~  414 (447)
T 4a0s_A          365 ------HEEQQATNRLFESGAVVPAMSAVYPLAEAAEACRVVQ--TSRQVGKVAVLCM  414 (447)
T ss_dssp             ------HHHHHHHHHHHHTTSSCCCEEEEEEGGGHHHHHHHHH--TTCCSSEEEEESS
T ss_pred             ------HHHHHHHHHHHHcCCcccceeEEEcHHHHHHHHHHHh--cCCCceEEEEEeC
Confidence                  2346688999999999999999999999999999998  8888999998873

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=99.96  E-value=2e-28  Score=189.91  Aligned_cols=194  Identities=20%  Similarity=0.249  Sum_probs=155.3

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeCh--hHHHh-HHHhhCC
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE--EELRN-ISRDASI   78 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~--~~~~~-~~~~~~~   78 (202)
                      |.+.+++++|++|||+|++|++|++++|+++..|++|++++++++    +++.++++|++.++++  .++.+ +.+.+.+
T Consensus       154 l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  229 (354)
T 2j8z_A          154 LHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQK----KLQMAEKLGAAAGFNYKKEDFSEATLKFTKG  229 (354)
T ss_dssp             HTTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHTCSEEEETTTSCHHHHHHHHTTT
T ss_pred             HHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHcCCcEEEecCChHHHHHHHHHhcC
Confidence            446788999999999999889999999999999999999887765    6788889999988875  34556 7777766


Q ss_pred             CCCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCc-ccccccCeeEEEEechhHhhhcccHHHHHHHHHHHH
Q psy2961          79 PKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPT-SAFIFKDITLRGHWMTRWQKENKESAERKSMMNELT  157 (202)
Q Consensus        79 ~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  157 (202)
                      .++|++|||+|++.+...+++|+++|+++.+|...+....++. ..++.+++++.|+....+.... .+....+.+++++
T Consensus       230 ~~~d~vi~~~G~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~-~~~~~~~~~~~~~  308 (354)
T 2j8z_A          230 AGVNLILDCIGGSYWEKNVNCLALDGRWVLYGLMGGGDINGPLFSKLLFKRGSLITSLLRSRDNKY-KQMLVNAFTEQIL  308 (354)
T ss_dssp             SCEEEEEESSCGGGHHHHHHHEEEEEEEEECCCTTCSCCCSCHHHHHHHTTCEEEECCSTTCCHHH-HHHHHHHHHHHTG
T ss_pred             CCceEEEECCCchHHHHHHHhccCCCEEEEEeccCCCccCCChhHHHHhCCCEEEEEEcccccccc-cHHHHHHHHHHHH
Confidence            7899999999998777799999999999999966544345565 6677899999998754321110 0012233456788


Q ss_pred             HHHHcC---CCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEeecC
Q psy2961         158 EMMRTG---KLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFRQ  202 (202)
Q Consensus       158 ~~~~~g---~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~~~  202 (202)
                      +++++|   ++++.++++|+++++++||+.+.  +++..||+|+++++
T Consensus       309 ~l~~~g~~~~l~~~i~~~~~l~~~~~A~~~~~--~~~~~gKvvv~~~~  354 (354)
T 2j8z_A          309 PHFSTEGPQRLLPVLDRIYPVTEIQEAHKYME--ANKNIGKIVLELPQ  354 (354)
T ss_dssp             GGGTC---CCCCCCEEEEEEGGGHHHHHHHHH--TTCCSSEEEEECCC
T ss_pred             HHHHcCCCccccCccceEEcHHHHHHHHHHHH--hCCCCceEEEecCC
Confidence            999999   89988999999999999999998  77778999998863

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=99.96  E-value=2.4e-28  Score=189.72  Aligned_cols=172  Identities=18%  Similarity=0.219  Sum_probs=145.2

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHC-CCcEEEEecCcccHHHHHHHHHhcCCceEeChhH-HHh-HHHhhCCCCCe
Q psy2961           6 NSLSPGDVVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE-LRN-ISRDASIPKPK   82 (202)
Q Consensus         6 ~~~~~g~~VlI~g~~~~vG~~~i~la~~~-g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~-~~~-~~~~~~~~~~d   82 (202)
                      +++++|++|||+|+ |++|++++|+|+.+ |++|++++++++    +++.++++|+++++|+.+ +.+ +++.+++.++|
T Consensus       182 ~~~~~g~~VlV~Ga-G~vG~~avqlak~~~Ga~Vi~~~~~~~----~~~~~~~lGa~~vi~~~~~~~~~v~~~~~g~g~D  256 (359)
T 1h2b_A          182 RTLYPGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEE----KLKLAERLGADHVVDARRDPVKQVMELTRGRGVN  256 (359)
T ss_dssp             TTCCTTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHH----HHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEE
T ss_pred             cCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHH----HHHHHHHhCCCEEEeccchHHHHHHHHhCCCCCc
Confidence            78999999999999 59999999999999 999998887765    689999999999998633 556 77777766899


Q ss_pred             EEEecCCCc---hHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHH
Q psy2961          83 LALNCVGGN---SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEM  159 (202)
Q Consensus        83 ~vid~~g~~---~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (202)
                      ++||++|++   .+..++++  ++|+++.+|.....  .++...++.+++++.|+....           .+.+++++++
T Consensus       257 vvid~~G~~~~~~~~~~~~~--~~G~~v~~g~~~~~--~~~~~~~~~~~~~i~g~~~~~-----------~~~~~~~~~l  321 (359)
T 1h2b_A          257 VAMDFVGSQATVDYTPYLLG--RMGRLIIVGYGGEL--RFPTIRVISSEVSFEGSLVGN-----------YVELHELVTL  321 (359)
T ss_dssp             EEEESSCCHHHHHHGGGGEE--EEEEEEECCCSSCC--CCCHHHHHHTTCEEEECCSCC-----------HHHHHHHHHH
T ss_pred             EEEECCCCchHHHHHHHhhc--CCCEEEEEeCCCCC--CCCHHHHHhCCcEEEEecCCC-----------HHHHHHHHHH
Confidence            999999998   44456666  99999999965432  566666778999999976432           3568999999


Q ss_pred             HHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         160 MRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       160 ~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      +++|++++.+ ++|+++++++||+.+.  +++..||+|+++
T Consensus       322 ~~~g~l~~~i-~~~~l~~~~~A~~~~~--~~~~~gKvvv~~  359 (359)
T 1h2b_A          322 ALQGKVRVEV-DIHKLDEINDVLERLE--KGEVLGRAVLIP  359 (359)
T ss_dssp             HHTTSCCCCE-EEEEGGGHHHHHHHHH--TTCCSSEEEEEC
T ss_pred             HHcCCCcceE-EEEeHHHHHHHHHHHH--cCCCceEEEeeC
Confidence            9999999988 9999999999999998  888789999974

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=99.96  E-value=4.3e-28  Score=187.29  Aligned_cols=182  Identities=19%  Similarity=0.240  Sum_probs=152.4

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeCh--hHHHh-HHHhhCC
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE--EELRN-ISRDASI   78 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~--~~~~~-~~~~~~~   78 (202)
                      |.+.+++++|++|||+|++|++|++++|+++..|++|++++++++    +++.++++|++.++++  .++.+ +.+.+.+
T Consensus       158 l~~~~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~----~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~  233 (343)
T 2eih_A          158 VVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSED----KLRRAKALGADETVNYTHPDWPKEVRRLTGG  233 (343)
T ss_dssp             HTTTSCCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHH----HHHHHHHHTCSEEEETTSTTHHHHHHHHTTT
T ss_pred             HHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHhcCCCEEEcCCcccHHHHHHHHhCC
Confidence            344568999999999999889999999999999999999887765    6788888999988874  34556 7777766


Q ss_pred             CCCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHH
Q psy2961          79 PKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTE  158 (202)
Q Consensus        79 ~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  158 (202)
                      .++|++||++|++.+..++++++++|+++.+|........++...++.+++++.|+....           .+.++++++
T Consensus       234 ~~~d~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~-----------~~~~~~~~~  302 (343)
T 2eih_A          234 KGADKVVDHTGALYFEGVIKATANGGRIAIAGASSGYEGTLPFAHVFYRQLSILGSTMAS-----------KSRLFPILR  302 (343)
T ss_dssp             TCEEEEEESSCSSSHHHHHHHEEEEEEEEESSCCCSCCCCCCTTHHHHTTCEEEECCSCC-----------GGGHHHHHH
T ss_pred             CCceEEEECCCHHHHHHHHHhhccCCEEEEEecCCCCcCccCHHHHHhCCcEEEEecCcc-----------HHHHHHHHH
Confidence            789999999997777779999999999999996654433466667778999999876321           345899999


Q ss_pred             HHHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         159 MMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       159 ~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      ++++|++++.++++|+++++++||+.+.  +++..+|+|+++
T Consensus       303 l~~~g~l~~~i~~~~~l~~~~~A~~~~~--~~~~~gKvvv~~  342 (343)
T 2eih_A          303 FVEEGKLKPVVGQVLPLEAAAEGHRLLE--ERRVFGKVVLQV  342 (343)
T ss_dssp             HHHHTSSCCCEEEEEEGGGHHHHHHHHH--TTCSSSEEEEEC
T ss_pred             HHHcCCCCCceeEEeeHHHHHHHHHHHH--cCCCceEEEEec
Confidence            9999999998999999999999999998  777789999975

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=99.96  E-value=1.1e-27  Score=186.18  Aligned_cols=189  Identities=17%  Similarity=0.267  Sum_probs=153.5

Q ss_pred             cccccCCC-----CCCEEEEeCCCcHHHHHHHHHHHH-CCCcEEEEecCcccHHHHHHHHHhcCCceEeChh-HHHh-HH
Q psy2961           2 LKDYNSLS-----PGDVVIQNGANSACGQNVIQIARH-WGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE-ELRN-IS   73 (202)
Q Consensus         2 l~~~~~~~-----~g~~VlI~g~~~~vG~~~i~la~~-~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~-~~~~-~~   73 (202)
                      |.+.++++     +|++|||+|++|++|++++|+|+. .|++|++++++++    +++.++++|++.++++. ++.+ ++
T Consensus       158 l~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~----~~~~~~~lGad~vi~~~~~~~~~v~  233 (363)
T 4dvj_A          158 FFDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPE----TQEWVKSLGAHHVIDHSKPLAAEVA  233 (363)
T ss_dssp             HHTTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHH----HHHHHHHTTCSEEECTTSCHHHHHH
T ss_pred             HHHhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHH----HHHHHHHcCCCEEEeCCCCHHHHHH
Confidence            34567777     899999999888999999999998 5899999888765    68999999999999864 4555 66


Q ss_pred             HhhCCCCCeEEEecCCCch-HHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhh-hcccHHHHHH
Q psy2961          74 RDASIPKPKLALNCVGGNS-ATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQK-ENKESAERKS  151 (202)
Q Consensus        74 ~~~~~~~~d~vid~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~  151 (202)
                      +. .+.++|+||||+|++. +..++++++++|+++.+|.    +..++...+..+++++.++....... .........+
T Consensus       234 ~~-~~~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~g~----~~~~~~~~~~~k~~~i~~~~~~~~~~~~~~~~~~~~~  308 (363)
T 4dvj_A          234 AL-GLGAPAFVFSTTHTDKHAAEIADLIAPQGRFCLIDD----PSAFDIMLFKRKAVSIHHELMFTRPMFGTPDMSEQGR  308 (363)
T ss_dssp             TT-CSCCEEEEEECSCHHHHHHHHHHHSCTTCEEEECSC----CSSCCGGGGTTTTCEEEECCTTHHHHHTCTTTHHHHH
T ss_pred             Hh-cCCCceEEEECCCchhhHHHHHHHhcCCCEEEEECC----CCccchHHHhhccceEEEEEeeccccccCcchhhHHH
Confidence            65 5578999999999874 4568999999999999863    23566677888999999877654211 1122234578


Q ss_pred             HHHHHHHHHHcCCCCCCcceee---chhhHHHHHHHHhhhcCCCCceEEEeec
Q psy2961         152 MMNELTEMMRTGKLAAPAHKFV---TLKNFQEALMNTMSIQGKSGVKYYIDFR  201 (202)
Q Consensus       152 ~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~~gkvv~~~~  201 (202)
                      .++++.+++++|++++.+++++   +++++++||+.+.  +++..||+|+++.
T Consensus       309 ~~~~~~~l~~~g~l~~~i~~~~~~~~l~~~~~A~~~~~--~~~~~GKvVl~~~  359 (363)
T 4dvj_A          309 LLNDVSRLVDEGRLRTTLTNRLSPINAANLKQAHALVE--SGTARGKVVIEGF  359 (363)
T ss_dssp             HHHHHHHHHHHTSSCCCEEEEECSCSHHHHHHHHHHHH--HTCCCSEEEEECS
T ss_pred             HHHHHHHHHHCCCeeccccceecCCCHHHHHHHHHHHH--hCCCceEEEEeCc
Confidence            8999999999999999887766   9999999999999  8888999999874

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=99.96  E-value=1.8e-29  Score=193.57  Aligned_cols=184  Identities=17%  Similarity=0.241  Sum_probs=151.4

Q ss_pred             ccCCCCCC-EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeE
Q psy2961           5 YNSLSPGD-VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKL   83 (202)
Q Consensus         5 ~~~~~~g~-~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~   83 (202)
                      +.++++++ +|||+|++|++|++++|+|+..|++|++++++++    +++.++++|+++++|+.+...+++.+ +.++|+
T Consensus       140 ~~~~~~~~g~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~----~~~~~~~lGa~~vi~~~~~~~~~~~~-~~~~d~  214 (324)
T 3nx4_A          140 DAGIRPQDGEVVVTGASGGVGSTAVALLHKLGYQVAAVSGRES----THGYLKSLGANRILSRDEFAESRPLE-KQLWAG  214 (324)
T ss_dssp             HTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGG----GHHHHHHHTCSEEEEGGGSSCCCSSC-CCCEEE
T ss_pred             hcccCCCCCeEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHhcCCCEEEecCCHHHHHhhc-CCCccE
Confidence            34566633 4999999889999999999999999999998876    58999999999999876532233333 358999


Q ss_pred             EEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHHHcC
Q psy2961          84 ALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTG  163 (202)
Q Consensus        84 vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  163 (202)
                      +|||+|++.+..++++++++|+++.+|.......+++...++.+++++.|++...+.     +....+.++++.+++++|
T Consensus       215 v~d~~g~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~l~~~g  289 (324)
T 3nx4_A          215 AIDTVGDKVLAKVLAQMNYGGCVAACGLAGGFALPTTVMPFILRNVRLQGVDSVMTP-----PARRAEAWARLVKDLPES  289 (324)
T ss_dssp             EEESSCHHHHHHHHHTEEEEEEEEECCCTTCSEEEEESHHHHHHCCEEEECCSTTCC-----HHHHHHHHHHHHHHSCHH
T ss_pred             EEECCCcHHHHHHHHHHhcCCEEEEEecCCCCCCCCCHHHHhhcCeEEEEEeccccC-----hHHHHHHHHHHHHHHHcC
Confidence            999999987777999999999999999765544455666778899999998754321     245567899999999999


Q ss_pred             CCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEeec
Q psy2961         164 KLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  201 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~~  201 (202)
                      ++++. +++|+++++++||+.+.  +++..||+|++++
T Consensus       290 ~l~~~-~~~~~l~~~~~A~~~~~--~~~~~gkvvv~~~  324 (324)
T 3nx4_A          290 FYAQA-ATEITLADAPKFADAII--NNQVQGRTLVKIK  324 (324)
T ss_dssp             HHHHH-EEEEEGGGHHHHHHHHH--TTCCCSEEEEECC
T ss_pred             CCCCC-ceeEeHHHHHHHHHHHH--hCCCCceEEEecC
Confidence            99887 89999999999999999  8888999999875

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=99.96  E-value=4.4e-28  Score=189.58  Aligned_cols=179  Identities=20%  Similarity=0.224  Sum_probs=150.4

Q ss_pred             cccC-CCCCCEEEEeCCCcHHHHHHHHHHHHCC-CcEEEEecCcccHHHHHHHHHhcCCceEeChh-----HHHh-HHHh
Q psy2961           4 DYNS-LSPGDVVIQNGANSACGQNVIQIARHWG-LKTINIVRNRDDIDKLKSYLKSLGADYVFTEE-----ELRN-ISRD   75 (202)
Q Consensus         4 ~~~~-~~~g~~VlI~g~~~~vG~~~i~la~~~g-~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~-----~~~~-~~~~   75 (202)
                      +.++ +++|++|||+| +|++|++++|+|+.+| ++|++++++++    +++.++++|++.++++.     ++.+ +++.
T Consensus       188 ~~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~~~~----~~~~~~~lGa~~vi~~~~~~~~~~~~~v~~~  262 (380)
T 1vj0_A          188 DEYPESFAGKTVVIQG-AGPLGLFGVVIARSLGAENVIVIAGSPN----RLKLAEEIGADLTLNRRETSVEERRKAIMDI  262 (380)
T ss_dssp             HTCSSCCBTCEEEEEC-CSHHHHHHHHHHHHTTBSEEEEEESCHH----HHHHHHHTTCSEEEETTTSCHHHHHHHHHHH
T ss_pred             HhcCCCCCCCEEEEEC-cCHHHHHHHHHHHHcCCceEEEEcCCHH----HHHHHHHcCCcEEEeccccCcchHHHHHHHH
Confidence            3467 89999999999 5699999999999999 59999887765    68899999999998753     5566 8888


Q ss_pred             hCCCCCeEEEecCCCc-hHHHHHHhcccCcEEEEEeccC-CCCcCCCccc-ccccCeeEEEEechhHhhhcccHHHHHHH
Q psy2961          76 ASIPKPKLALNCVGGN-SATNLLRTLVSKGVMVTYGGMS-REPVQIPTSA-FIFKDITLRGHWMTRWQKENKESAERKSM  152 (202)
Q Consensus        76 ~~~~~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  152 (202)
                      +++.++|+||||+|++ .+..++++|+++|+++.+|... .....++... ++.+++++.|++...           .+.
T Consensus       263 ~~g~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~-----------~~~  331 (380)
T 1vj0_A          263 THGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIWVSD-----------TSH  331 (380)
T ss_dssp             TTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCSCCCCEEECHHHHTTTTTCEEEECCCCC-----------HHH
T ss_pred             hCCCCCcEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCCCeeEchHHHHHhCCeEEEEeecCC-----------HHH
Confidence            8777899999999985 5556899999999999999665 3244566666 788999999987542           456


Q ss_pred             HHHHHHHHHc--CCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEeec
Q psy2961         153 MNELTEMMRT--GKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  201 (202)
Q Consensus       153 ~~~~~~~~~~--g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~~  201 (202)
                      ++++++++++  |++++.++++|+++++++||+.+.  +++.. |+|++++
T Consensus       332 ~~~~~~l~~~~~g~l~~~i~~~~~l~~~~~A~~~~~--~~~~~-Kvvl~~~  379 (380)
T 1vj0_A          332 FVKTVSITSRNYQLLSKLITHRLPLKEANKALELME--SREAL-KVILYPE  379 (380)
T ss_dssp             HHHHHHHHHTCHHHHGGGCCEEEEGGGHHHHHHHHH--HTSCS-CEEEECC
T ss_pred             HHHHHHHHHhhcCCeeeEEEEEEeHHHHHHHHHHHh--cCCCc-eEEEEeC
Confidence            8999999999  999888889999999999999998  77777 9999876

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=99.96  E-value=5.8e-28  Score=186.66  Aligned_cols=173  Identities=21%  Similarity=0.292  Sum_probs=130.4

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHC--CCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhCCCCCeE
Q psy2961           7 SLSPGDVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKL   83 (202)
Q Consensus         7 ~~~~g~~VlI~g~~~~vG~~~i~la~~~--g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~~~~~d~   83 (202)
                      ++ +|++|||+|+ |++|++++|+|+.+  |++|++++++++    +++.++++|+++++++.+..+ +.+.+++.++|+
T Consensus       168 ~~-~g~~VlV~Ga-G~vG~~aiqlak~~~~Ga~Vi~~~~~~~----~~~~~~~lGa~~vi~~~~~~~~~~~~~~g~g~D~  241 (344)
T 2h6e_A          168 KF-AEPVVIVNGI-GGLAVYTIQILKALMKNITIVGISRSKK----HRDFALELGADYVSEMKDAESLINKLTDGLGASI  241 (344)
T ss_dssp             TC-SSCEEEEECC-SHHHHHHHHHHHHHCTTCEEEEECSCHH----HHHHHHHHTCSEEECHHHHHHHHHHHHTTCCEEE
T ss_pred             CC-CCCEEEEECC-CHHHHHHHHHHHHhcCCCEEEEEeCCHH----HHHHHHHhCCCEEeccccchHHHHHhhcCCCccE
Confidence            78 9999999999 59999999999999  999888887765    688999999999998755223 555555568999


Q ss_pred             EEecCCCc-hHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHHHc
Q psy2961          84 ALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRT  162 (202)
Q Consensus        84 vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (202)
                      +|||+|++ .+..++++++++|+++.+|.... ...++...++.+++++.|+....           .+.++++++++.+
T Consensus       242 vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~i~g~~~~~-----------~~~~~~~~~l~~~  309 (344)
T 2h6e_A          242 AIDLVGTEETTYNLGKLLAQEGAIILVGMEGK-RVSLEAFDTAVWNKKLLGSNYGS-----------LNDLEDVVRLSES  309 (344)
T ss_dssp             EEESSCCHHHHHHHHHHEEEEEEEEECCCCSS-CCCCCHHHHHHTTCEEEECCSCC-----------HHHHHHHHHHHHT
T ss_pred             EEECCCChHHHHHHHHHhhcCCEEEEeCCCCC-CcccCHHHHhhCCcEEEEEecCC-----------HHHHHHHHHHHHc
Confidence            99999998 55668999999999999986543 34566666778999999976432           3568899999999


Q ss_pred             CCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         163 GKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       163 g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      |++++.+ ++|+++++++||+.+.  +++..||+|+++
T Consensus       310 g~i~~~i-~~~~l~~~~~A~~~~~--~~~~~gKvvl~~  344 (344)
T 2h6e_A          310 GKIKPYI-IKVPLDDINKAFTNLD--EGRVDGRQVITP  344 (344)
T ss_dssp             TSSCCCE-EEECC------------------CEEEECC
T ss_pred             CCCCcce-EEEeHHHHHHHHHHHH--cCCCceEEEEeC
Confidence            9999988 9999999999999998  777789999864

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=99.96  E-value=9.8e-28  Score=184.19  Aligned_cols=190  Identities=18%  Similarity=0.184  Sum_probs=154.6

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeCh--hHHHh-HHHhhCC
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE--EELRN-ISRDASI   78 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~--~~~~~-~~~~~~~   78 (202)
                      |.+.+++++|++|||+|++|++|++++|+++..|++|++++++++    +.+.++++|++.++++  .++.+ +.+.+.+
T Consensus       132 l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  207 (327)
T 1qor_A          132 LRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQ----KAQSALKAGAWQVINYREEDLVERLKEITGG  207 (327)
T ss_dssp             HHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHH----HHHHHHHHTCSEEEETTTSCHHHHHHHHTTT
T ss_pred             HHHhhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHcCCCEEEECCCccHHHHHHHHhCC
Confidence            345778999999999999889999999999999999999887765    5788888999988874  34555 7777766


Q ss_pred             CCCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCccccccc-CeeEEEEechhHhhhcccHHHHHHHHHHHH
Q psy2961          79 PKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFK-DITLRGHWMTRWQKENKESAERKSMMNELT  157 (202)
Q Consensus        79 ~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  157 (202)
                      .++|++|||+|.+.+..++++++++|+++.+|...+....++...++.+ ++++.+.....|..   .+....+.+++++
T Consensus       208 ~~~D~vi~~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  284 (327)
T 1qor_A          208 KKVRVVYDSVGRDTWERSLDCLQRRGLMVSFGNSSGAVTGVNLGILNQKGSLYVTRPSLQGYIT---TREELTEASNELF  284 (327)
T ss_dssp             CCEEEEEECSCGGGHHHHHHTEEEEEEEEECCCTTCCCCCBCTHHHHHTTSCEEECCCHHHHCC---SHHHHHHHHHHHH
T ss_pred             CCceEEEECCchHHHHHHHHHhcCCCEEEEEecCCCCCCccCHHHHhhccceEEEccchhhhcC---CHHHHHHHHHHHH
Confidence            7899999999977777799999999999999966543334566666667 77777655444322   1244567899999


Q ss_pred             HHHHcCCCCCCcc--eeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         158 EMMRTGKLAAPAH--KFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       158 ~~~~~g~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      +++.+|++++.++  ++|+++++++||+.+.  +++..||+|+++
T Consensus       285 ~l~~~g~l~~~i~~~~~~~l~~~~~A~~~~~--~~~~~gKvvl~~  327 (327)
T 1qor_A          285 SLIASGVIKVDVAEQQKYPLKDAQRAHEILE--SRATQGSSLLIP  327 (327)
T ss_dssp             HHHHTTSSCCCCCGGGEEEGGGHHHHHHHHH--TTCCCBCCEEEC
T ss_pred             HHHHCCCcccccccCcEEcHHHHHHHHHHHH--hCCCCceEEEeC
Confidence            9999999999888  9999999999999998  777889999864

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=99.96  E-value=1.4e-27  Score=186.64  Aligned_cols=183  Identities=15%  Similarity=0.196  Sum_probs=148.2

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcccHHHHHHHHHhcCCceEeChh----HHHh-HHHh
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTEE----ELRN-ISRD   75 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~----~~~~-~~~~   75 (202)
                      +.+.+++++|++|||+|+ |++|++++|+|+.+|+ +|+++..+++    +++.++++|+++++++.    ++.+ +++.
T Consensus       185 l~~~~~~~~g~~VlV~Ga-G~vG~~a~q~a~~~Ga~~Vi~~~~~~~----~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~  259 (378)
T 3uko_A          185 VWNTAKVEPGSNVAIFGL-GTVGLAVAEGAKTAGASRIIGIDIDSK----KYETAKKFGVNEFVNPKDHDKPIQEVIVDL  259 (378)
T ss_dssp             HHTTTCCCTTCCEEEECC-SHHHHHHHHHHHHHTCSCEEEECSCTT----HHHHHHTTTCCEEECGGGCSSCHHHHHHHH
T ss_pred             HHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHH----HHHHHHHcCCcEEEccccCchhHHHHHHHh
Confidence            456788999999999998 5999999999999999 7888877776    68999999999999864    4666 8888


Q ss_pred             hCCCCCeEEEecCCCchH-HHHHHhcccC-cEEEEEeccCC-CCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHH
Q psy2961          76 ASIPKPKLALNCVGGNSA-TNLLRTLVSK-GVMVTYGGMSR-EPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSM  152 (202)
Q Consensus        76 ~~~~~~d~vid~~g~~~~-~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  152 (202)
                      +++ ++|+||||+|++.. ..++++++++ |+++.+|.... ....++...++ +++++.|+....+.        ..+.
T Consensus       260 ~~g-g~D~vid~~g~~~~~~~~~~~l~~g~G~iv~~G~~~~~~~~~~~~~~~~-~~~~i~g~~~~~~~--------~~~~  329 (378)
T 3uko_A          260 TDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTAFGGFK--------SRTQ  329 (378)
T ss_dssp             TTS-CBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTTCCEEECTHHHH-TTCEEEECSGGGCC--------HHHH
T ss_pred             cCC-CCCEEEECCCCHHHHHHHHHHhhccCCEEEEEcccCCCCccccCHHHHh-cCcEEEEEEecCCC--------chHH
Confidence            876 99999999999654 5689999996 99999996543 22334444444 48899988755432        1456


Q ss_pred             HHHHHHHHHcCCCCCC--cceeechhhHHHHHHHHhhhcCCCCceEEEeecC
Q psy2961         153 MNELTEMMRTGKLAAP--AHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFRQ  202 (202)
Q Consensus       153 ~~~~~~~~~~g~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~~~  202 (202)
                      +.++++++.+|++++.  ++++|+++++++||+.+.  +++.. |+||++++
T Consensus       330 ~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~--~g~~~-Kvvi~~~~  378 (378)
T 3uko_A          330 VPWLVEKYMNKEIKVDEYITHNLTLGEINKAFDLLH--EGTCL-RCVLDTSK  378 (378)
T ss_dssp             HHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHTT--CTTCS-EEEEETTC
T ss_pred             HHHHHHHHHcCCCChhHheeeEeeHHHHHHHHHHHH--CCCce-EEEEecCC
Confidence            8899999999999864  789999999999999998  77765 99999864

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=99.96  E-value=1.5e-27  Score=184.73  Aligned_cols=186  Identities=19%  Similarity=0.215  Sum_probs=153.2

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeCh--hHHHh-HHHhhCC
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE--EELRN-ISRDASI   78 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~--~~~~~-~~~~~~~   78 (202)
                      |.+.+++++|++|||+|++|++|++++|+++..|++|++++++++    +.+.++++|++.++++  .++.+ +.+.+.+
T Consensus       162 l~~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~----~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~  237 (351)
T 1yb5_A          162 LIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEE----GQKIVLQNGAHEVFNHREVNYIDKIKKYVGE  237 (351)
T ss_dssp             HHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHH----HHHHHHHTTCSEEEETTSTTHHHHHHHHHCT
T ss_pred             HHHhhCCCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChh----HHHHHHHcCCCEEEeCCCchHHHHHHHHcCC
Confidence            345688999999999999889999999999999999999887765    5778899999988874  34556 7777776


Q ss_pred             CCCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHH
Q psy2961          79 PKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTE  158 (202)
Q Consensus        79 ~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  158 (202)
                      .++|++|||+|++.+...+++++++|+++.+|...  ...++...++.+++++.|+....+     .+....+.++.+.+
T Consensus       238 ~~~D~vi~~~G~~~~~~~~~~l~~~G~iv~~g~~~--~~~~~~~~~~~~~~~i~g~~~~~~-----~~~~~~~~~~~l~~  310 (351)
T 1yb5_A          238 KGIDIIIEMLANVNLSKDLSLLSHGGRVIVVGSRG--TIEINPRDTMAKESSIIGVTLFSS-----TKEEFQQYAAALQA  310 (351)
T ss_dssp             TCEEEEEESCHHHHHHHHHHHEEEEEEEEECCCCS--CEEECTHHHHTTTCEEEECCGGGC-----CHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCChHHHHHHHHhccCCCEEEEEecCC--CCccCHHHHHhCCcEEEEEEeecC-----CHHHHHHHHHHHHH
Confidence            78999999999887777899999999999998532  234555667789999999865321     12456777888999


Q ss_pred             HHHcCCCCCCcceeechhhHHHHHHH-HhhhcCCCCceEEEee
Q psy2961         159 MMRTGKLAAPAHKFVTLKNFQEALMN-TMSIQGKSGVKYYIDF  200 (202)
Q Consensus       159 ~~~~g~~~~~~~~~~~~~~~~~a~~~-~~~~~~~~~gkvv~~~  200 (202)
                      ++.+|++++.++++||++++++||+. +.  .+...||+|+++
T Consensus       311 ~~~~g~l~~~i~~~~~l~~~~~A~~~~~~--~~~~~gKvvi~~  351 (351)
T 1yb5_A          311 GMEIGWLKPVIGSQYPLEKVAEAHENIIH--GSGATGKMILLL  351 (351)
T ss_dssp             HHHHTCCCCCEEEEEEGGGHHHHHHHHHH--SSCCSSEEEEEC
T ss_pred             HHHCCCccCccceEEcHHHHHHHHHHHHH--hCCCCeEEEEeC
Confidence            99999999999999999999999998 55  566789999974

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=99.95  E-value=9e-28  Score=185.74  Aligned_cols=186  Identities=16%  Similarity=0.143  Sum_probs=148.7

Q ss_pred             ccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChh--HHHh-HHHhhCCC
Q psy2961           3 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRDASIP   79 (202)
Q Consensus         3 ~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~--~~~~-~~~~~~~~   79 (202)
                      .+..++++|++|+|+|+| ++|++++|+|+++|++++++++..++   +++.++++|+++++|+.  +..+ ++..+++.
T Consensus       153 ~~~~~~~~g~~VlV~GaG-~vG~~aiq~ak~~G~~~vi~~~~~~~---k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~~~  228 (346)
T 4a2c_A          153 FHLAQGCENKNVIIIGAG-TIGLLAIQCAVALGAKSVTAIDISSE---KLALAKSFGAMQTFNSSEMSAPQMQSVLRELR  228 (346)
T ss_dssp             HHHTTCCTTSEEEEECCS-HHHHHHHHHHHHTTCSEEEEEESCHH---HHHHHHHTTCSEEEETTTSCHHHHHHHHGGGC
T ss_pred             HHHhccCCCCEEEEECCC-CcchHHHHHHHHcCCcEEEEEechHH---HHHHHHHcCCeEEEeCCCCCHHHHHHhhcccC
Confidence            356788999999999985 99999999999999987766655442   78999999999999864  4556 77777788


Q ss_pred             CCeEEEecCCCchHH-HHHHhcccCcEEEEEeccCCCCc--CCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHH
Q psy2961          80 KPKLALNCVGGNSAT-NLLRTLVSKGVMVTYGGMSREPV--QIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNEL  156 (202)
Q Consensus        80 ~~d~vid~~g~~~~~-~~~~~l~~~G~~v~~g~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  156 (202)
                      ++|+++|++|.+... .++++++++|+++.+|.......  ..+...++.+++++.|++......      ...+.++++
T Consensus       229 g~d~v~d~~G~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~k~~~i~G~~~~~~~~------~~~~~~~~~  302 (346)
T 4a2c_A          229 FNQLILETAGVPQTVELAVEIAGPHAQLALVGTLHQDLHLTSATFGKILRKELTVIGSWMNYSSP------WPGQEWETA  302 (346)
T ss_dssp             SSEEEEECSCSHHHHHHHHHHCCTTCEEEECCCCSSCEEECHHHHHHHHHHTCEEEECCTTCCSS------TTCHHHHHH
T ss_pred             CcccccccccccchhhhhhheecCCeEEEEEeccCCCccccccCHHHHhhceeEEEEEeccccCc------chHHHHHHH
Confidence            999999999987655 48999999999999996654321  223455678999999986542211      113558889


Q ss_pred             HHHHHcCCCCCC--cceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         157 TEMMRTGKLAAP--AHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       157 ~~~~~~g~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      .+++++|++++.  ++++|+|+++++||+.+.  +++..||+||.+
T Consensus       303 ~~l~~~g~l~~~~lI~~~~~l~~~~~A~~~l~--~~~~~GKvVl~P  346 (346)
T 4a2c_A          303 SRLLTERKLSLEPLIAHRGSFESFAQAVRDIA--RNAMPGKVLLIP  346 (346)
T ss_dssp             HHHHHTTCSCCGGGEEEEECHHHHHHHHHHHT--TSCCCSEEEECC
T ss_pred             HHHHHcCCCCCCccEeEEEeHHHHHHHHHHHH--cCCCceEEEEEC
Confidence            999999998753  789999999999999999  888899999863

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=99.95  E-value=1.2e-28  Score=189.42  Aligned_cols=184  Identities=21%  Similarity=0.313  Sum_probs=149.2

Q ss_pred             ccCCCCCC-EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHH-Hh-HHHhhCCCCC
Q psy2961           5 YNSLSPGD-VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEEL-RN-ISRDASIPKP   81 (202)
Q Consensus         5 ~~~~~~g~-~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~-~~-~~~~~~~~~~   81 (202)
                      ++++++|+ +|||+|++|++|++++|+|+..|++|++++++++    +++.++++|++.++++.+. .+ +.+.+ +.++
T Consensus       144 ~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~----~~~~~~~lGa~~v~~~~~~~~~~~~~~~-~~~~  218 (330)
T 1tt7_A          144 QNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNRE----AADYLKQLGASEVISREDVYDGTLKALS-KQQW  218 (330)
T ss_dssp             HTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSS----THHHHHHHTCSEEEEHHHHCSSCCCSSC-CCCE
T ss_pred             hcCcCCCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHcCCcEEEECCCchHHHHHHhh-cCCc
Confidence            46788997 9999999889999999999999999999998876    5788899999999987654 23 44433 3579


Q ss_pred             eEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHHH
Q psy2961          82 KLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMR  161 (202)
Q Consensus        82 d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (202)
                      |++|||+|++.+..++++++++|+++.+|...+....++...++.+++++.|++...+.     .....+.++.+.+++.
T Consensus       219 d~vid~~g~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~-----~~~~~~~~~~~~~~~~  293 (330)
T 1tt7_A          219 QGAVDPVGGKQLASLLSKIQYGGSVAVSGLTGGGEVPATVYPFILRGVSLLGIDSVYCP-----MDVRAAVWERMSSDLK  293 (330)
T ss_dssp             EEEEESCCTHHHHHHHTTEEEEEEEEECCCSSCSCEEECSHHHHTSCCEEEECCSSSCC-----HHHHHHHHHHTTTTSC
T ss_pred             cEEEECCcHHHHHHHHHhhcCCCEEEEEecCCCCccCcchHHHHhcCeEEEEEeccccC-----HHHHHHHHHHHHHHHh
Confidence            99999999977777999999999999999665433445555677899999997532111     1234567888888999


Q ss_pred             cCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         162 TGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       162 ~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      +|++++.++++|+++++++||+.+.  +++..||+|+++
T Consensus       294 ~g~l~~~i~~~~~l~~~~~A~~~~~--~~~~~gKvvi~~  330 (330)
T 1tt7_A          294 PDQLLTIVDREVSLEETPGALKDIL--QNRIQGRVIVKL  330 (330)
T ss_dssp             CSCSTTSEEEEECSTTHHHHHHHTT--TTCCSSEEEECC
T ss_pred             cCCcccccceEEcHHHHHHHHHHHH--cCCCCCeEEEeC
Confidence            9999988889999999999999998  777789999864

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=99.95  E-value=1.8e-27  Score=184.13  Aligned_cols=178  Identities=21%  Similarity=0.270  Sum_probs=150.9

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHC-CCcEEEEecCcccHHHHHHHHHhcCCceEeCh--hHHHh-HHHhhCCC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVFTE--EELRN-ISRDASIP   79 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~-g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~--~~~~~-~~~~~~~~   79 (202)
                      +.+++++|++|||+|+| ++|.+++|+|+.. |++||+++++++    +++.++++|++.++|+  .++.+ +++.+++.
T Consensus       157 ~~~~~~~g~~VlV~GaG-~~g~~a~~~a~~~~g~~Vi~~~~~~~----r~~~~~~~Ga~~~i~~~~~~~~~~v~~~t~g~  231 (348)
T 4eez_A          157 KVSGVKPGDWQVIFGAG-GLGNLAIQYAKNVFGAKVIAVDINQD----KLNLAKKIGADVTINSGDVNPVDEIKKITGGL  231 (348)
T ss_dssp             HHHTCCTTCEEEEECCS-HHHHHHHHHHHHTSCCEEEEEESCHH----HHHHHHHTTCSEEEEC-CCCHHHHHHHHTTSS
T ss_pred             cccCCCCCCEEEEEcCC-CccHHHHHHHHHhCCCEEEEEECcHH----HhhhhhhcCCeEEEeCCCCCHHHHhhhhcCCC
Confidence            45678999999999987 8898999999866 678888887775    6899999999999986  45677 89999888


Q ss_pred             CCeEEEecCCCchHH-HHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHH
Q psy2961          80 KPKLALNCVGGNSAT-NLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTE  158 (202)
Q Consensus        80 ~~d~vid~~g~~~~~-~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  158 (202)
                      ++|.++|++++.... ..+++++++|+++.+|... ....++...++.+++++.|+...+           .+.++++++
T Consensus       232 g~d~~~~~~~~~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~i~gs~~~~-----------~~~~~~~~~  299 (348)
T 4eez_A          232 GVQSAIVCAVARIAFEQAVASLKPMGKMVAVAVPN-TEMTLSVPTVVFDGVEVAGSLVGT-----------RLDLAEAFQ  299 (348)
T ss_dssp             CEEEEEECCSCHHHHHHHHHTEEEEEEEEECCCCS-CEEEECHHHHHHSCCEEEECCSCC-----------HHHHHHHHH
T ss_pred             CceEEEEeccCcchhheeheeecCCceEEEEeccC-CCCccCHHHHHhCCeEEEEEecCC-----------HHHHHHHHH
Confidence            999999999887755 5899999999999998543 344567777889999999987553           345888999


Q ss_pred             HHHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEeec
Q psy2961         159 MMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  201 (202)
Q Consensus       159 ~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~~  201 (202)
                      ++++|+++|. .++|||+++++||+.+.  +++..||+||+|+
T Consensus       300 l~~~g~i~p~-~~~~~l~~~~~A~~~l~--~g~~~GKvVl~~s  339 (348)
T 4eez_A          300 FGAEGKVKPI-VATRKLEEINDIIDEMK--AGKIEGRMVIDFT  339 (348)
T ss_dssp             HHHTTSCCCC-EEEECGGGHHHHHHHHH--TTCCSSEEEEECC
T ss_pred             HHHcCCCEEE-EEEEeHHHHHHHHHHHH--CCCCccEEEEEcc
Confidence            9999999975 47999999999999999  8888999999986

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=99.95  E-value=2.5e-27  Score=185.10  Aligned_cols=180  Identities=18%  Similarity=0.294  Sum_probs=145.0

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcccHHHHHHHHHhcCCceEeChh----HHHh-HHHh
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTEE----ELRN-ISRD   75 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~----~~~~-~~~~   75 (202)
                      +.+.+++++|++|||+|+ |++|++++|+|+.+|+ +|+++.++++    +++.++++|+++++++.    ++.+ +++.
T Consensus       187 l~~~~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~----~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~  261 (376)
T 1e3i_A          187 AINTAKVTPGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGE----KFPKAKALGATDCLNPRELDKPVQDVITEL  261 (376)
T ss_dssp             HHTTSCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGG----GHHHHHHTTCSEEECGGGCSSCHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHH----HHHHHHHhCCcEEEccccccchHHHHHHHH
Confidence            346688999999999997 5999999999999999 6778777766    58889999999999864    3666 7777


Q ss_pred             hCCCCCeEEEecCCCch-HHHHHHhcccC-cEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHH
Q psy2961          76 ASIPKPKLALNCVGGNS-ATNLLRTLVSK-GVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMM  153 (202)
Q Consensus        76 ~~~~~~d~vid~~g~~~-~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  153 (202)
                      +.+ ++|+||||+|++. +..++++++++ |+++.+|. ......++...++.++ ++.|+....+.        ..+.+
T Consensus       262 ~~~-g~Dvvid~~G~~~~~~~~~~~l~~~~G~iv~~G~-~~~~~~~~~~~~~~~~-~i~g~~~~~~~--------~~~~~  330 (376)
T 1e3i_A          262 TAG-GVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGA-KVDEMTIPTVDVILGR-SINGTFFGGWK--------SVDSV  330 (376)
T ss_dssp             HTS-CBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCC-SSSEEEEEHHHHHTTC-EEEECSGGGCC--------HHHHH
T ss_pred             hCC-CccEEEECCCCHHHHHHHHHHhhcCCCEEEEECC-CCCccccCHHHhhccC-eEEEEecCCCC--------cHHHH
Confidence            775 8999999999854 45689999999 99999986 3333345555566677 88887654321        14568


Q ss_pred             HHHHHHHHcCCCCC--CcceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         154 NELTEMMRTGKLAA--PAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       154 ~~~~~~~~~g~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      +++++++.+|++++  .++++|+++++++||+.+.  +++ .+|+||+|
T Consensus       331 ~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~--~~~-~~Kvvi~~  376 (376)
T 1e3i_A          331 PNLVSDYKNKKFDLDLLVTHALPFESINDAIDLMK--EGK-SIRTILTF  376 (376)
T ss_dssp             HHHHHHHHTTSSCGGGGEEEEEEGGGHHHHHHHHH--TTC-CSEEEEEC
T ss_pred             HHHHHHHHcCCCCcHHhEeeeecHHHHHHHHHHHh--cCC-cceEEEeC
Confidence            99999999999985  4678999999999999998  666 47999975

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=99.95  E-value=2.1e-27  Score=183.62  Aligned_cols=187  Identities=21%  Similarity=0.254  Sum_probs=153.0

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHH-hcCCceEeChh---HHHh-HHHhh
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK-SLGADYVFTEE---ELRN-ISRDA   76 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~-~lg~~~v~~~~---~~~~-~~~~~   76 (202)
                      |.+.+++++|++|||+|++|++|++++|+++..|++|++++++++    +++.++ ++|++.++|+.   ++.+ +.+.+
T Consensus       147 l~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~----~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~  222 (345)
T 2j3h_A          147 FYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKE----KVDLLKTKFGFDDAFNYKEESDLTAALKRCF  222 (345)
T ss_dssp             HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHH----HHHHHHHTSCCSEEEETTSCSCSHHHHHHHC
T ss_pred             HHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHcCCceEEecCCHHHHHHHHHHHh
Confidence            345678999999999999889999999999999999998887765    678887 79999888753   4555 66665


Q ss_pred             CCCCCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCC-----CcCCCcccccccCeeEEEEechhHhhhcccHHHHHH
Q psy2961          77 SIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSRE-----PVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKS  151 (202)
Q Consensus        77 ~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  151 (202)
                      + .++|++||++|++.+..++++++++|+++.+|.....     ...++...++.+++++.|+....+.      ....+
T Consensus       223 ~-~~~d~vi~~~g~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~------~~~~~  295 (345)
T 2j3h_A          223 P-NGIDIYFENVGGKMLDAVLVNMNMHGRIAVCGMISQYNLENQEGVHNLSNIIYKRNRIQGFVVSDFY------DKYSK  295 (345)
T ss_dssp             T-TCEEEEEESSCHHHHHHHHTTEEEEEEEEECCCGGGTTCSSCCCBSCTTHHHHHTCEEEECCGGGGG------GGHHH
T ss_pred             C-CCCcEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccCCccccccHHHHhhhceeeceeeehhhh------hhHHH
Confidence            4 6899999999997666789999999999999865432     2234555677899999997765432      12356


Q ss_pred             HHHHHHHHHHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEeec
Q psy2961         152 MMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  201 (202)
Q Consensus       152 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~~  201 (202)
                      .++++++++++|++++.+..+|+++++++||+.+.  +++..||+|+.++
T Consensus       296 ~~~~~~~l~~~g~i~~~~~~~~~l~~~~~A~~~~~--~~~~~gKvvv~~~  343 (345)
T 2j3h_A          296 FLEFVLPHIREGKITYVEDVADGLEKAPEALVGLF--HGKNVGKQVVVVA  343 (345)
T ss_dssp             HHHHHHHHHHTTSSCCCEEEEESGGGSHHHHHHHH--TTCCSSEEEEESS
T ss_pred             HHHHHHHHHHCCCCcCcccccCCHHHHHHHHHHHH--cCCCceEEEEEeC
Confidence            79999999999999987777899999999999999  8888999999875

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=99.95  E-value=5.1e-27  Score=183.25  Aligned_cols=181  Identities=18%  Similarity=0.230  Sum_probs=145.3

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcccHHHHHHHHHhcCCceEeChh----HHHh-HHHh
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTEE----ELRN-ISRD   75 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~----~~~~-~~~~   75 (202)
                      +.+.+++++|++|||+|+ |++|++++|+|+.+|+ +|+++.++++    +++.++++|+++++++.    ++.+ +++.
T Consensus       184 l~~~~~~~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~----~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~  258 (374)
T 1cdo_A          184 AVNTAKVEPGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPD----KFEKAKVFGATDFVNPNDHSEPISQVLSKM  258 (374)
T ss_dssp             HHTTTCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGG----GHHHHHHTTCCEEECGGGCSSCHHHHHHHH
T ss_pred             HHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHH----HHHHHHHhCCceEEeccccchhHHHHHHHH
Confidence            345688999999999997 5999999999999999 6888777766    57889999999999865    3666 7777


Q ss_pred             hCCCCCeEEEecCCCch-HHHHHHhcccC-cEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHH
Q psy2961          76 ASIPKPKLALNCVGGNS-ATNLLRTLVSK-GVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMM  153 (202)
Q Consensus        76 ~~~~~~d~vid~~g~~~-~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  153 (202)
                      +.+ ++|++||++|++. +..++++++++ |+++.+|........++...++.++ ++.|+....+.        ..+.+
T Consensus       259 ~~~-g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~-~i~g~~~~~~~--------~~~~~  328 (374)
T 1cdo_A          259 TNG-GVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDLHDVATRPIQLIAGR-TWKGSMFGGFK--------GKDGV  328 (374)
T ss_dssp             HTS-CBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCSSSCEEECHHHHHTTC-EEEECSGGGCC--------HHHHH
T ss_pred             hCC-CCCEEEECCCCHHHHHHHHHHhhcCCcEEEEEcCCCCCCcccCHHHHhcCC-eEEEEecCCCC--------cHHHH
Confidence            765 8999999999854 45689999999 9999998654333344555566677 88887654321        14568


Q ss_pred             HHHHHHHHcCCCCC--CcceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         154 NELTEMMRTGKLAA--PAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       154 ~~~~~~~~~g~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      +++++++.+|++++  .++++|+++++++||+.+.  +++. +|+||+|
T Consensus       329 ~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~--~~~~-~kvvi~~  374 (374)
T 1cdo_A          329 PKMVKAYLDKKVKLDEFITHRMPLESVNDAIDLMK--HGKC-IRTVLSL  374 (374)
T ss_dssp             HHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHH--TTCC-SEEEEEC
T ss_pred             HHHHHHHHcCCCChHHheeeEecHHHHHHHHHHHH--CCCe-eEEEEeC
Confidence            99999999999985  4678999999999999998  6664 6999975

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=99.95  E-value=8.6e-28  Score=186.95  Aligned_cols=178  Identities=17%  Similarity=0.187  Sum_probs=146.2

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCc-EEEEecCcccHHHHHHHHHhcCCceEeC-------hhHHHh-HHH
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLGADYVFT-------EEELRN-ISR   74 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg~~~v~~-------~~~~~~-~~~   74 (202)
                      +.+++++|++|||+|+ |++|++++|+|+.+|++ |+++..+++    +++.++++ ++.+++       ..++.+ +++
T Consensus       173 ~~~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~----~~~~a~~l-~~~~~~~~~~~~~~~~~~~~v~~  246 (363)
T 3m6i_A          173 QRAGVRLGDPVLICGA-GPIGLITMLCAKAAGACPLVITDIDEG----RLKFAKEI-CPEVVTHKVERLSAEESAKKIVE  246 (363)
T ss_dssp             HHHTCCTTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEEESCHH----HHHHHHHH-CTTCEEEECCSCCHHHHHHHHHH
T ss_pred             HHcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHH----HHHHHHHh-chhcccccccccchHHHHHHHHH
Confidence            5678999999999998 59999999999999997 777776665    68899999 654443       356777 888


Q ss_pred             hhCCCCCeEEEecCCCch-HHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHH
Q psy2961          75 DASIPKPKLALNCVGGNS-ATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMM  153 (202)
Q Consensus        75 ~~~~~~~d~vid~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  153 (202)
                      .+++.++|++|||+|++. +..++++|+++|+++.+|... ....++...++.+++++.++..+            .+.+
T Consensus       247 ~t~g~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~~-~~~~~~~~~~~~~~~~i~g~~~~------------~~~~  313 (363)
T 3m6i_A          247 SFGGIEPAVALECTGVESSIAAAIWAVKFGGKVFVIGVGK-NEIQIPFMRASVREVDLQFQYRY------------CNTW  313 (363)
T ss_dssp             HTSSCCCSEEEECSCCHHHHHHHHHHSCTTCEEEECCCCC-SCCCCCHHHHHHHTCEEEECCSC------------SSCH
T ss_pred             HhCCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEEccCC-CCccccHHHHHhcCcEEEEccCC------------HHHH
Confidence            888889999999999985 556999999999999998544 34456667788899999998743            2237


Q ss_pred             HHHHHHHHcCCCCC--CcceeechhhHHHHHHHHhhhcC-CCCceEEEeecC
Q psy2961         154 NELTEMMRTGKLAA--PAHKFVTLKNFQEALMNTMSIQG-KSGVKYYIDFRQ  202 (202)
Q Consensus       154 ~~~~~~~~~g~~~~--~~~~~~~~~~~~~a~~~~~~~~~-~~~gkvv~~~~~  202 (202)
                      +++++++++|++++  .++++||++++++||+.+.  ++ ...+|+|++.++
T Consensus       314 ~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~--~~~~~~~Kvvi~~~~  363 (363)
T 3m6i_A          314 PRAIRLVENGLVDLTRLVTHRFPLEDALKAFETAS--DPKTGAIKVQIQSLE  363 (363)
T ss_dssp             HHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHH--CGGGCCSEEEEECC-
T ss_pred             HHHHHHHHhCCCChHHceeeeeeHHHHHHHHHHHh--ccCCCeEEEEEecCC
Confidence            88999999999954  4779999999999999998  66 678899998763

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=99.95  E-value=1.7e-27  Score=200.66  Aligned_cols=185  Identities=18%  Similarity=0.226  Sum_probs=152.6

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeCh--hHHHh-HHHhhCC
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE--EELRN-ISRDASI   78 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~--~~~~~-~~~~~~~   78 (202)
                      |.+.+++++|++|||+|++|++|++++|+|++.|++|++++++++     .+.++ +|+++++++  .++.+ +++.+++
T Consensus       337 l~~~a~l~~G~~VLI~gaaGgvG~~aiqlAk~~Ga~V~~t~~~~k-----~~~l~-lga~~v~~~~~~~~~~~i~~~t~g  410 (795)
T 3slk_A          337 LVDLAGLRPGESLLVHSAAGGVGMAAIQLARHLGAEVYATASEDK-----WQAVE-LSREHLASSRTCDFEQQFLGATGG  410 (795)
T ss_dssp             CCCCTCCCTTCCEEEESTTBHHHHHHHHHHHHTTCCEEEECCGGG-----GGGSC-SCGGGEECSSSSTHHHHHHHHSCS
T ss_pred             HHHHhCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeChHH-----hhhhh-cChhheeecCChhHHHHHHHHcCC
Confidence            567889999999999999889999999999999999999886652     44555 999999975  46777 8999998


Q ss_pred             CCCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHH
Q psy2961          79 PKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTE  158 (202)
Q Consensus        79 ~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  158 (202)
                      .++|+||||+|++.+...+++|+++|+++.+|...... .... ....+++++.++.+...     .+....+.++++.+
T Consensus       411 ~GvDvVld~~gg~~~~~~l~~l~~~Gr~v~iG~~~~~~-~~~~-~~~~~~~~~~~~~l~~~-----~~~~~~~~l~~~~~  483 (795)
T 3slk_A          411 RGVDVVLNSLAGEFADASLRMLPRGGRFLELGKTDVRD-PVEV-ADAHPGVSYQAFDTVEA-----GPQRIGEMLHELVE  483 (795)
T ss_dssp             SCCSEEEECCCTTTTHHHHTSCTTCEEEEECCSTTCCC-HHHH-HHHSSSEEEEECCGGGG-----HHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCcHHHHHHHHHhcCCCEEEEeccccccC-cccc-cccCCCCEEEEeecccc-----CHHHHHHHHHHHHH
Confidence            99999999999988888999999999999998543221 1111 12246777877765321     22556788999999


Q ss_pred             HHHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEeec
Q psy2961         159 MMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  201 (202)
Q Consensus       159 ~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~~  201 (202)
                      ++++|++++.+.++|+++++++||+.+.  +++..||+||++.
T Consensus       484 l~~~g~l~p~~~~~~~l~~~~eA~~~l~--~g~~~GKvVl~~~  524 (795)
T 3slk_A          484 LFEGRVLEPLPVTAWDVRQAPEALRHLS--QARHVGKLVLTMP  524 (795)
T ss_dssp             HHHTTSCCCCCEEEEEGGGHHHHHHHHH--HTCCCBEEEEECC
T ss_pred             HHHcCCcCCCcceeEcHHHHHHHHHHHh--cCCccceEEEecC
Confidence            9999999999999999999999999999  8888999999875

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=99.95  E-value=2.5e-27  Score=180.09  Aligned_cols=180  Identities=20%  Similarity=0.267  Sum_probs=143.0

Q ss_pred             ccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhCCCCC
Q psy2961           3 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKP   81 (202)
Q Consensus         3 ~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~~~~~   81 (202)
                      .+.+ +++|++|||+|++|++|++++|+|+..|++|++++++++    +++.++++|++.++++.+..+ ....   .++
T Consensus       119 ~~~~-~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~----~~~~~~~~ga~~~~~~~~~~~~~~~~---~~~  190 (302)
T 1iz0_A          119 KRAQ-ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPE----KLALPLALGAEEAATYAEVPERAKAW---GGL  190 (302)
T ss_dssp             HHTT-CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGG----GSHHHHHTTCSEEEEGGGHHHHHHHT---TSE
T ss_pred             HHhc-CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHhcCCCEEEECCcchhHHHHh---cCc
Confidence            3456 899999999999889999999999999999999998776    578888999999988643112 2222   589


Q ss_pred             eEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHH---
Q psy2961          82 KLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTE---  158 (202)
Q Consensus        82 d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---  158 (202)
                      |++|| +|++.+...+++++++|+++.+|........++...++.+++++.|+....+   .    ...+.++++++   
T Consensus       191 d~vid-~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~----~~~~~~~~~~~~~~  262 (302)
T 1iz0_A          191 DLVLE-VRGKEVEESLGLLAHGGRLVYIGAAEGEVAPIPPLRLMRRNLAVLGFWLTPL---L----REGALVEEALGFLL  262 (302)
T ss_dssp             EEEEE-CSCTTHHHHHTTEEEEEEEEEC-------CCCCTTHHHHTTCEEEECCHHHH---T----TCHHHHHHHHHHHG
T ss_pred             eEEEE-CCHHHHHHHHHhhccCCEEEEEeCCCCCCCCcCHHHHHhCCCeEEEEeccch---h----hhHHHHHHHHhhhH
Confidence            99999 9987777799999999999999866543334566667889999999876544   1    12456788888   


Q ss_pred             HHHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         159 MMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       159 ~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      ++.+|++++.++++|+++++++||+.+.  +++..||+|+++
T Consensus       263 l~~~g~l~~~i~~~~~l~~~~~A~~~~~--~~~~~gKvvv~~  302 (302)
T 1iz0_A          263 PRLGRELRPVVGPVFPFAEAEAAFRALL--DRGHTGKVVVRL  302 (302)
T ss_dssp             GGBTTTBCCCEEEEEEGGGHHHHHHHTT--CTTCCBEEEEEC
T ss_pred             HHHcCCcccccceEEcHHHHHHHHHHHH--cCCCCceEEEeC
Confidence            9999999998899999999999999998  777789999864

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=99.95  E-value=7e-28  Score=185.06  Aligned_cols=183  Identities=19%  Similarity=0.270  Sum_probs=143.4

Q ss_pred             ccCCCCCC-EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHH-Hh-HHHhhCCCCC
Q psy2961           5 YNSLSPGD-VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEEL-RN-ISRDASIPKP   81 (202)
Q Consensus         5 ~~~~~~g~-~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~-~~-~~~~~~~~~~   81 (202)
                      ++++++|+ +|||+|++|++|++++|+|+..|++|++++++++    +++.++++|+++++++.+. .+ +.+.. +.++
T Consensus       143 ~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~----~~~~~~~lGa~~~i~~~~~~~~~~~~~~-~~~~  217 (328)
T 1xa0_A          143 EHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAA----EHDYLRVLGAKEVLAREDVMAERIRPLD-KQRW  217 (328)
T ss_dssp             HTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTT----CHHHHHHTTCSEEEECC---------CC-SCCE
T ss_pred             hcCCCCCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHcCCcEEEecCCcHHHHHHHhc-CCcc
Confidence            46788997 9999999889999999999999999999998876    5788899999999876543 33 44443 3589


Q ss_pred             eEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHHH
Q psy2961          82 KLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMR  161 (202)
Q Consensus        82 d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (202)
                      |++|||+|++.+..++++++++|+++.+|...+....++...++.+++++.|+......     .....+.++.+.+++.
T Consensus       218 d~vid~~g~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~-----~~~~~~~~~~~~~~~~  292 (328)
T 1xa0_A          218 AAAVDPVGGRTLATVLSRMRYGGAVAVSGLTGGAEVPTTVHPFILRGVSLLGIDSVYCP-----MDLRLRIWERLAGDLK  292 (328)
T ss_dssp             EEEEECSTTTTHHHHHHTEEEEEEEEECSCCSSSCCCCCSHHHHHTTCEEEECCSSSCC-----HHHHHHHHHHHHTTTC
T ss_pred             cEEEECCcHHHHHHHHHhhccCCEEEEEeecCCCCCCCchhhhhhcCceEEEEecccCC-----HHHHHHHHHHHHHHHH
Confidence            99999999987778999999999999999665434455555677899999997532111     1234566788888888


Q ss_pred             cCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEeec
Q psy2961         162 TGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  201 (202)
Q Consensus       162 ~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~~  201 (202)
                      +| +++ ++++|+++++++||+.+.  +++..||+|++++
T Consensus       293 ~g-l~~-~~~~~~l~~~~~A~~~~~--~~~~~gKvvv~~~  328 (328)
T 1xa0_A          293 PD-LER-IAQEISLAELPQALKRIL--RGELRGRTVVRLA  328 (328)
T ss_dssp             CC-HHH-HEEEEEGGGHHHHHHHHH--HTCCCSEEEEECC
T ss_pred             cC-Cce-eeeEeCHHHHHHHHHHHH--cCCCCCeEEEEeC
Confidence            88 776 578999999999999998  7777899999864

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=99.95  E-value=4e-27  Score=182.74  Aligned_cols=177  Identities=18%  Similarity=0.261  Sum_probs=145.3

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcccHHHHHHHHHhcCCceEeChh-----HHHh-HHHhh
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTEE-----ELRN-ISRDA   76 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~-----~~~~-~~~~~   76 (202)
                      +.+++++|++|||+|+ |++|++++|+|+.+|+ +|+++.++++    +++.++++|++.++++.     ++.+ +.+.+
T Consensus       165 ~~~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~----~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~  239 (356)
T 1pl8_A          165 RRGGVTLGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSAT----RLSKAKEIGADLVLQISKESPQEIARKVEGQL  239 (356)
T ss_dssp             HHHTCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHH----HHHHHHHTTCSEEEECSSCCHHHHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHH----HHHHHHHhCCCEEEcCcccccchHHHHHHHHh
Confidence            4578999999999997 5999999999999999 7888877665    68899999999988743     4555 77777


Q ss_pred             CCCCCeEEEecCCCch-HHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHH
Q psy2961          77 SIPKPKLALNCVGGNS-ATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNE  155 (202)
Q Consensus        77 ~~~~~d~vid~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  155 (202)
                      + .++|+|||++|++. +..++++|+++|+++.+|.. .....++...++.+++++.|+..+            .+.+++
T Consensus       240 ~-~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~-~~~~~~~~~~~~~~~~~i~g~~~~------------~~~~~~  305 (356)
T 1pl8_A          240 G-CKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLG-SEMTTVPLLHAAIREVDIKGVFRY------------CNTWPV  305 (356)
T ss_dssp             T-SCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCC-CSCCCCCHHHHHHTTCEEEECCSC------------SSCHHH
T ss_pred             C-CCCCEEEECCCChHHHHHHHHHhcCCCEEEEEecC-CCCCccCHHHHHhcceEEEEeccc------------HHHHHH
Confidence            6 78999999999875 45689999999999999853 334456666778899999987643            123788


Q ss_pred             HHHHHHcCCCCC--CcceeechhhHHHHHHHHhhhcCCCCceEEEeecC
Q psy2961         156 LTEMMRTGKLAA--PAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFRQ  202 (202)
Q Consensus       156 ~~~~~~~g~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~~~  202 (202)
                      +++++++|++++  .++++|+++++++||+.+.  ++ ..+|+|+++++
T Consensus       306 ~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~--~~-~~gKvvi~~~~  351 (356)
T 1pl8_A          306 AISMLASKSVNVKPLVTHRFPLEKALEAFETFK--KG-LGLKIMLKCDP  351 (356)
T ss_dssp             HHHHHHTTSCCCGGGEEEEEEGGGHHHHHHHHH--TT-CCSEEEEECCT
T ss_pred             HHHHHHcCCCChHHheEEEecHHHHHHHHHHHh--CC-CceEEEEeCCC
Confidence            999999999764  4678999999999999998  77 78999999863

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=99.95  E-value=7.5e-27  Score=182.25  Aligned_cols=180  Identities=18%  Similarity=0.242  Sum_probs=143.8

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcccHHHHHHHHHhcCCceEeChh----HHHh-HHHh
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTEE----ELRN-ISRD   75 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~----~~~~-~~~~   75 (202)
                      +.+.+++++|++|||+|+ |++|++++|+|+.+|+ +|+++.++++    +++.++++|+++++++.    ++.+ +++.
T Consensus       183 l~~~~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~----~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~  257 (373)
T 1p0f_A          183 AVNTAKVTPGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKD----KFPKAIELGATECLNPKDYDKPIYEVICEK  257 (373)
T ss_dssp             HHTTTCCCTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGG----GHHHHHHTTCSEEECGGGCSSCHHHHHHHH
T ss_pred             HHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHH----HHHHHHHcCCcEEEecccccchHHHHHHHH
Confidence            345688999999999997 5999999999999999 6777777766    58899999999999865    3666 8787


Q ss_pred             hCCCCCeEEEecCCCch-HHHHHHhcccC-cEEEEEeccCC-CCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHH
Q psy2961          76 ASIPKPKLALNCVGGNS-ATNLLRTLVSK-GVMVTYGGMSR-EPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSM  152 (202)
Q Consensus        76 ~~~~~~d~vid~~g~~~-~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  152 (202)
                      +.+ ++|+||||+|++. +..++++++++ |+++.+|.... ....++...++.++ ++.|+....+.         .+.
T Consensus       258 t~g-g~Dvvid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~-~i~g~~~~~~~---------~~~  326 (373)
T 1p0f_A          258 TNG-GVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERLPLDPLLLLTGR-SLKGSVFGGFK---------GEE  326 (373)
T ss_dssp             TTS-CBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCTTCCEEECTHHHHTTC-EEEECSGGGCC---------GGG
T ss_pred             hCC-CCCEEEECCCCHHHHHHHHHHHhcCCCEEEEEccCCCCCccccCHHHhccCc-eEEeeccCCcC---------HHH
Confidence            775 8999999999854 45689999999 99999996543 22344555555677 88887654321         134


Q ss_pred             HHHHHHHHHcCCCCC--CcceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         153 MNELTEMMRTGKLAA--PAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       153 ~~~~~~~~~~g~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      ++++++++++|++++  .++++|+++++++||+.+.  +++. +|+|++|
T Consensus       327 ~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~--~~~~-~kvvi~~  373 (373)
T 1p0f_A          327 VSRLVDDYMKKKINVNFLVSTKLTLDQINKAFELLS--SGQG-VRSIMIY  373 (373)
T ss_dssp             HHHHHHHHHTTSSCGGGGEEEEECGGGHHHHHHHTT--TSSC-SEEEEEC
T ss_pred             HHHHHHHHHcCCCCchheEEEEeeHHHHHHHHHHHH--CCCc-ceEEEeC
Confidence            888999999999985  4679999999999999998  6664 7999875

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=99.95  E-value=3.4e-27  Score=182.10  Aligned_cols=177  Identities=18%  Similarity=0.261  Sum_probs=147.8

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChh--HHHh-HHHhhCCCC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRDASIPK   80 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~--~~~~-~~~~~~~~~   80 (202)
                      +..++++|++|||+|+| ++|++++|+|+..|++|++++++++    +++.++++|++.++++.  ++.+ +.+ +.+ +
T Consensus       160 ~~~~~~~g~~VlV~GaG-~vG~~a~qla~~~Ga~Vi~~~~~~~----~~~~~~~lGa~~~i~~~~~~~~~~~~~-~~g-~  232 (340)
T 3s2e_A          160 KVTDTRPGQWVVISGIG-GLGHVAVQYARAMGLRVAAVDIDDA----KLNLARRLGAEVAVNARDTDPAAWLQK-EIG-G  232 (340)
T ss_dssp             HTTTCCTTSEEEEECCS-TTHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHTTCSEEEETTTSCHHHHHHH-HHS-S
T ss_pred             HHcCCCCCCEEEEECCC-HHHHHHHHHHHHCCCeEEEEeCCHH----HHHHHHHcCCCEEEeCCCcCHHHHHHH-hCC-C
Confidence            45688999999999985 8999999999999999999888775    68899999999999753  5666 666 433 8


Q ss_pred             CeEEEecCCCchH-HHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHH
Q psy2961          81 PKLALNCVGGNSA-TNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEM  159 (202)
Q Consensus        81 ~d~vid~~g~~~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (202)
                      +|++||++|+... ..++++++++|+++.+|... ....++...++.+++++.|+....           .+.+++++++
T Consensus       233 ~d~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~-~~~~~~~~~~~~~~~~i~g~~~~~-----------~~~~~~~~~l  300 (340)
T 3s2e_A          233 AHGVLVTAVSPKAFSQAIGMVRRGGTIALNGLPP-GDFGTPIFDVVLKGITIRGSIVGT-----------RSDLQESLDF  300 (340)
T ss_dssp             EEEEEESSCCHHHHHHHHHHEEEEEEEEECSCCS-SEEEEEHHHHHHTTCEEEECCSCC-----------HHHHHHHHHH
T ss_pred             CCEEEEeCCCHHHHHHHHHHhccCCEEEEeCCCC-CCCCCCHHHHHhCCeEEEEEecCC-----------HHHHHHHHHH
Confidence            9999999987654 45899999999999998554 334555566778999999987543           4558999999


Q ss_pred             HHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEeecC
Q psy2961         160 MRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFRQ  202 (202)
Q Consensus       160 ~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~~~  202 (202)
                      +++|++++. .++++++++++||+.+.  +++..||+|+++++
T Consensus       301 ~~~g~l~~~-~~~~~l~~~~~A~~~~~--~~~~~Gkvvv~~~~  340 (340)
T 3s2e_A          301 AAHGDVKAT-VSTAKLDDVNDVFGRLR--EGKVEGRVVLDFSR  340 (340)
T ss_dssp             HHTTSCCCC-EEEECGGGHHHHHHHHH--TTCCCSEEEEECCC
T ss_pred             HHhCCCCce-EEEEeHHHHHHHHHHHH--cCCCceEEEEecCC
Confidence            999999986 46789999999999999  88889999999864

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=99.95  E-value=8.1e-27  Score=181.11  Aligned_cols=187  Identities=18%  Similarity=0.305  Sum_probs=152.0

Q ss_pred             cccccCCCCC--CEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcccHHHHHHHHHh-cCCceEeCh--hHHHh-HHH
Q psy2961           2 LKDYNSLSPG--DVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKS-LGADYVFTE--EELRN-ISR   74 (202)
Q Consensus         2 l~~~~~~~~g--~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~~~~~~~~~~~~-lg~~~v~~~--~~~~~-~~~   74 (202)
                      |.+.+++++|  ++|||+|++|++|++++|+++..|+ +|++++++++    +++.+++ +|++.++++  .++.+ +.+
T Consensus       150 l~~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~----~~~~~~~~~g~~~~~d~~~~~~~~~~~~  225 (357)
T 2zb4_A          150 IQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHE----KCILLTSELGFDAAINYKKDNVAEQLRE  225 (357)
T ss_dssp             HHHHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHH----HHHHHHHTSCCSEEEETTTSCHHHHHHH
T ss_pred             HHHhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHH----HHHHHHHHcCCceEEecCchHHHHHHHH
Confidence            3466789999  9999999988999999999999999 8988887765    5677776 999988875  34556 777


Q ss_pred             hhCCCCCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCc---------ccccccCeeEEEEechhHhhhccc
Q psy2961          75 DASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPT---------SAFIFKDITLRGHWMTRWQKENKE  145 (202)
Q Consensus        75 ~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~---------~~~~~~~~~~~g~~~~~~~~~~~~  145 (202)
                      .+.+ ++|++|||+|+..+..++++++++|+++.+|........++.         ..++.+++++.++....+.     
T Consensus       226 ~~~~-~~d~vi~~~G~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~-----  299 (357)
T 2zb4_A          226 SCPA-GVDVYFDNVGGNISDTVISQMNENSHIILCGQISQYNKDVPYPPPLSPAIEAIQKERNITRERFLVLNYK-----  299 (357)
T ss_dssp             HCTT-CEEEEEESCCHHHHHHHHHTEEEEEEEEECCCGGGTTSCCCSSCCCCHHHHHHHHHHTCEEEECCGGGGG-----
T ss_pred             hcCC-CCCEEEECCCHHHHHHHHHHhccCcEEEEECCccccccCccccccchhhhhhhhhcceeEEEEeehhhhh-----
Confidence            7665 899999999987777799999999999999865432222222         3466789999998765432     


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEeec
Q psy2961         146 SAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  201 (202)
Q Consensus       146 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~~  201 (202)
                       ....+.++++++++++|++++.+..+|+++++++||+.+.  +++..||+|++++
T Consensus       300 -~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~--~~~~~gKvvi~~~  352 (357)
T 2zb4_A          300 -DKFEPGILQLSQWFKEGKLKIKETVINGLENMGAAFQSMM--TGGNIGKQIVCIS  352 (357)
T ss_dssp             -GGHHHHHHHHHHHHHTTCCCCCEEEEECGGGHHHHHHHHH--TTCCSBEEEEECC
T ss_pred             -HHHHHHHHHHHHHHHcCCCcCccceecCHHHHHHHHHHHH--cCCCCceEEEEEe
Confidence             2236679999999999999998778899999999999998  7777899999885

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=99.95  E-value=7.8e-27  Score=180.86  Aligned_cols=181  Identities=12%  Similarity=0.148  Sum_probs=144.8

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcccHHHHHHHHHhcCCceEeCh--hHHHh-HHHhhCCC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTE--EELRN-ISRDASIP   79 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~--~~~~~-~~~~~~~~   79 (202)
                      +.+++++|++|||+|+ |++|++++|+|+..|+ +|+++.++++    +++.++++|+++++++  .++.+ +++.+++.
T Consensus       160 ~~~~~~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~----~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~  234 (352)
T 3fpc_A          160 ELANIKLGDTVCVIGI-GPVGLMSVAGANHLGAGRIFAVGSRKH----CCDIALEYGATDIINYKNGDIVEQILKATDGK  234 (352)
T ss_dssp             HHTTCCTTCCEEEECC-SHHHHHHHHHHHTTTCSSEEEECCCHH----HHHHHHHHTCCEEECGGGSCHHHHHHHHTTTC
T ss_pred             HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCHH----HHHHHHHhCCceEEcCCCcCHHHHHHHHcCCC
Confidence            4678999999999997 5999999999999999 6888776654    6899999999999986  35677 88888888


Q ss_pred             CCeEEEecCCCch-HHHHHHhcccCcEEEEEeccCCC-CcCCCcc--cccccCeeEEEEechhHhhhcccHHHHHHHHHH
Q psy2961          80 KPKLALNCVGGNS-ATNLLRTLVSKGVMVTYGGMSRE-PVQIPTS--AFIFKDITLRGHWMTRWQKENKESAERKSMMNE  155 (202)
Q Consensus        80 ~~d~vid~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  155 (202)
                      ++|++|||+|++. +..++++|+++|+++.+|..... ..+++..  ....+++++.++....          ..+.+++
T Consensus       235 g~D~v~d~~g~~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~----------~~~~~~~  304 (352)
T 3fpc_A          235 GVDKVVIAGGDVHTFAQAVKMIKPGSDIGNVNYLGEGDNIDIPRSEWGVGMGHKHIHGGLCPG----------GRLRMER  304 (352)
T ss_dssp             CEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCCSCSEEEEETTTTGGGTBCEEEEEBCCCC----------HHHHHHH
T ss_pred             CCCEEEECCCChHHHHHHHHHHhcCCEEEEecccCCCCceecchhHhhhhccccEEEEeeccC----------chhHHHH
Confidence            9999999999964 56699999999999999965432 1122221  1234678888876421          1345899


Q ss_pred             HHHHHHcCCCCCC--cceeec-hhhHHHHHHHHhhhcCC-CCceEEEeec
Q psy2961         156 LTEMMRTGKLAAP--AHKFVT-LKNFQEALMNTMSIQGK-SGVKYYIDFR  201 (202)
Q Consensus       156 ~~~~~~~g~~~~~--~~~~~~-~~~~~~a~~~~~~~~~~-~~gkvv~~~~  201 (202)
                      +++++++|++++.  ++++|+ ++++++||+.+.  ++. ..+|+|++++
T Consensus       305 ~~~l~~~g~i~~~~~i~~~~~gl~~~~~A~~~~~--~~~~~~~Kvvi~~~  352 (352)
T 3fpc_A          305 LIDLVFYKRVDPSKLVTHVFRGFDNIEKAFMLMK--DKPKDLIKPVVILA  352 (352)
T ss_dssp             HHHHHHTTSCCGGGGEEEEEESTTHHHHHHHHHH--SCCTTCSEEEEECC
T ss_pred             HHHHHHcCCCChhHhheeeCCCHHHHHHHHHHHH--hCCCCcEEEEEEeC
Confidence            9999999999975  678999 999999999998  654 4589999874

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=99.95  E-value=4.4e-27  Score=183.48  Aligned_cols=181  Identities=18%  Similarity=0.208  Sum_probs=147.0

Q ss_pred             ccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcccHHHHHHHHHhcCCceEeCh--hHHHh-HHHhhCC
Q psy2961           3 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTE--EELRN-ISRDASI   78 (202)
Q Consensus         3 ~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~--~~~~~-~~~~~~~   78 (202)
                      .+.+++++|++|||+|+ |++|++++|+|+.+|+ +|+++.++++    +++.++++|++.++++  .++.+ +.+.+++
T Consensus       183 ~~~~~~~~g~~VlV~Ga-G~vG~~a~qlak~~Ga~~Vi~~~~~~~----~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~g  257 (371)
T 1f8f_A          183 INALKVTPASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVES----RLELAKQLGATHVINSKTQDPVAAIKEITDG  257 (371)
T ss_dssp             HTTTCCCTTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCHH----HHHHHHHHTCSEEEETTTSCHHHHHHHHTTS
T ss_pred             HhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHH----HHHHHHHcCCCEEecCCccCHHHHHHHhcCC
Confidence            45678999999999997 5999999999999999 5777776654    6889999999999875  35666 8777776


Q ss_pred             CCCeEEEecCCCch-HHHHHHhcccCcEEEEEeccCC-CCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHH
Q psy2961          79 PKPKLALNCVGGNS-ATNLLRTLVSKGVMVTYGGMSR-EPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNEL  156 (202)
Q Consensus        79 ~~~d~vid~~g~~~-~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  156 (202)
                       ++|+|||++|++. +..++++|+++|+++.+|.... ....++...++.+++++.|++...+.        ..+.++++
T Consensus       258 -g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~--------~~~~~~~~  328 (371)
T 1f8f_A          258 -GVNFALESTGSPEILKQGVDALGILGKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEGSGS--------PKKFIPEL  328 (371)
T ss_dssp             -CEEEEEECSCCHHHHHHHHHTEEEEEEEEECCCCSTTCCCCCCHHHHHHTTCEEEECSGGGSC--------HHHHHHHH
T ss_pred             -CCcEEEECCCCHHHHHHHHHHHhcCCEEEEeCCCCCCCccccCHHHHHhCCCEEEEeCCCCCc--------hHHHHHHH
Confidence             8999999999854 4568999999999999996543 23456666677899999998754321        14568999


Q ss_pred             HHHHHcCCCCCC--cceeechhhHHHHHHHHhhhcCCCCceEEEeec
Q psy2961         157 TEMMRTGKLAAP--AHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  201 (202)
Q Consensus       157 ~~~~~~g~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~~  201 (202)
                      ++++++|++++.  +++ |+++++++||+.+.  +++. +|+|+++.
T Consensus       329 ~~l~~~g~l~~~~~i~~-~~l~~~~~A~~~~~--~~~~-~Kvvv~~~  371 (371)
T 1f8f_A          329 VRLYQQGKFPFDQLVKF-YAFDEINQAAIDSR--KGIT-LKPIIKIA  371 (371)
T ss_dssp             HHHHHTTSCCGGGGEEE-EEGGGHHHHHHHHH--HTSC-SEEEEECC
T ss_pred             HHHHHcCCCCcccceeE-ecHHHHHHHHHHHH--CCCc-eEEEEeeC
Confidence            999999999864  567 99999999999998  6664 79999863

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=99.95  E-value=1.3e-26  Score=180.91  Aligned_cols=181  Identities=15%  Similarity=0.212  Sum_probs=145.0

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcccHHHHHHHHHhcCCceEeChh----HHHh-HHHh
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTEE----ELRN-ISRD   75 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~----~~~~-~~~~   75 (202)
                      +.+.+++++|++|||+|+ |++|++++|+|+.+|+ +|+++.++++    +++.++++|+++++++.    ++.+ +.+.
T Consensus       183 l~~~~~~~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~----~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~  257 (374)
T 2jhf_A          183 AVKVAKVTQGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKD----KFAKAKEVGATECVNPQDYKKPIQEVLTEM  257 (374)
T ss_dssp             HHTTTCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGG----GHHHHHHTTCSEEECGGGCSSCHHHHHHHH
T ss_pred             HHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHH----HHHHHHHhCCceEecccccchhHHHHHHHH
Confidence            345678999999999997 5999999999999999 6778777766    57889999999999864    3666 7777


Q ss_pred             hCCCCCeEEEecCCCch-HHHHHHhcccC-cEEEEEeccCC-CCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHH
Q psy2961          76 ASIPKPKLALNCVGGNS-ATNLLRTLVSK-GVMVTYGGMSR-EPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSM  152 (202)
Q Consensus        76 ~~~~~~d~vid~~g~~~-~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  152 (202)
                      +++ ++|++||++|++. +..++++++++ |+++.+|.... ....++...++.++ ++.|++...+.        ..+.
T Consensus       258 ~~~-g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~-~i~g~~~~~~~--------~~~~  327 (374)
T 2jhf_A          258 SNG-GVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNPMLLLSGR-TWKGAIFGGFK--------SKDS  327 (374)
T ss_dssp             TTS-CBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCCCTTCCEEECTHHHHTTC-EEEECSGGGCC--------HHHH
T ss_pred             hCC-CCcEEEECCCCHHHHHHHHHHhhcCCcEEEEeccCCCCCccccCHHHHhcCC-eEEEeccCCCC--------hHHH
Confidence            765 8999999999854 45689999999 99999986543 23345555566677 88887654321        1456


Q ss_pred             HHHHHHHHHcCCCCC--CcceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         153 MNELTEMMRTGKLAA--PAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       153 ~~~~~~~~~~g~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      ++++++++.+|++++  .++++|+++++++||+.+.  +++ .+|+|++|
T Consensus       328 ~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~--~~~-~~Kvvi~~  374 (374)
T 2jhf_A          328 VPKLVADFMAKKFALDPLITHVLPFEKINEGFDLLR--SGE-SIRTILTF  374 (374)
T ss_dssp             HHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHH--TTC-CSEEEEEC
T ss_pred             HHHHHHHHHcCCCCchhheEEEEeHHHHHHHHHHHH--CCC-cceEEEeC
Confidence            899999999999985  4678999999999999998  666 46999975

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=99.95  E-value=9.8e-27  Score=181.62  Aligned_cols=181  Identities=18%  Similarity=0.254  Sum_probs=144.9

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcccHHHHHHHHHhcCCceEeChh----HHHh-HHHh
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTEE----ELRN-ISRD   75 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~----~~~~-~~~~   75 (202)
                      +.+.+++++|++|||+|+ |++|++++|+|+.+|+ +|+++.++++    +++.++++|++.++++.    ++.+ +++.
T Consensus       182 l~~~~~~~~g~~VlV~Ga-G~vG~~avqla~~~Ga~~Vi~~~~~~~----~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~  256 (373)
T 2fzw_A          182 AVNTAKLEPGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKD----KFARAKEFGATECINPQDFSKPIQEVLIEM  256 (373)
T ss_dssp             HHTTTCCCTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGG----GHHHHHHHTCSEEECGGGCSSCHHHHHHHH
T ss_pred             HHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHH----HHHHHHHcCCceEeccccccccHHHHHHHH
Confidence            346688999999999997 5999999999999999 6778777766    57889999999999865    3666 7777


Q ss_pred             hCCCCCeEEEecCCCch-HHHHHHhcccC-cEEEEEeccCC-CCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHH
Q psy2961          76 ASIPKPKLALNCVGGNS-ATNLLRTLVSK-GVMVTYGGMSR-EPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSM  152 (202)
Q Consensus        76 ~~~~~~d~vid~~g~~~-~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  152 (202)
                      +.+ ++|++||++|++. +..++++++++ |+++.+|.... ....++...++.++ ++.|+....+.        ..+.
T Consensus       257 ~~~-g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~-~i~g~~~~~~~--------~~~~  326 (373)
T 2fzw_A          257 TDG-GVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEIATRPFQLVTGR-TWKGTAFGGWK--------SVES  326 (373)
T ss_dssp             TTS-CBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTTCCEEECTHHHHTTC-EEEECSGGGCC--------HHHH
T ss_pred             hCC-CCCEEEECCCcHHHHHHHHHhhccCCcEEEEEecCCCCceeeeCHHHHhcCC-EEEEeccCCCC--------cHHH
Confidence            765 8999999999854 45689999999 99999986543 22345555566677 88887654321        1456


Q ss_pred             HHHHHHHHHcCCCCC--CcceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         153 MNELTEMMRTGKLAA--PAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       153 ~~~~~~~~~~g~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      ++++++++++|++++  .++++|+++++++||+.+.  +++. +|+|+++
T Consensus       327 ~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~--~~~~-~kvvi~~  373 (373)
T 2fzw_A          327 VPKLVSEYMSKKIKVDEFVTHNLSFDEINKAFELMH--SGKS-IRTVVKI  373 (373)
T ss_dssp             HHHHHHHHHTTSSCSGGGEEEEEEGGGHHHHHHHHH--HTCC-SEEEEEC
T ss_pred             HHHHHHHHHcCCCCchheEeEEeeHHHHHHHHHHHh--CCCc-ceEEEeC
Confidence            899999999999985  4679999999999999998  6664 6999875

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=99.95  E-value=6.3e-27  Score=181.06  Aligned_cols=178  Identities=19%  Similarity=0.217  Sum_probs=148.1

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHC-CCcEEEEecCcccHHHHHHHHHhcCCceEeChh--HHHh-HHHhhCCCC
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRDASIPK   80 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~-g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~--~~~~-~~~~~~~~~   80 (202)
                      ++++++|++|||+|++|++|++++|+++.. |++|+++.++++    +++.++++|++.++++.  ++.+ +.+.+...+
T Consensus       165 ~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  240 (347)
T 1jvb_A          165 KASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREE----AVEAAKRAGADYVINASMQDPLAEIRRITESKG  240 (347)
T ss_dssp             HTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHH----HHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSC
T ss_pred             hcCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHH----HHHHHHHhCCCEEecCCCccHHHHHHHHhcCCC
Confidence            478999999999999999999999999999 999988887765    67888899999888753  3444 666664248


Q ss_pred             CeEEEecCCCc-hHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHH
Q psy2961          81 PKLALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEM  159 (202)
Q Consensus        81 ~d~vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (202)
                      +|++||++|++ .+..++++++++|+++.+|...... .++...++.+++++.|+....           .+.+++++++
T Consensus       241 ~d~vi~~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~-~~~~~~~~~~~~~i~g~~~~~-----------~~~~~~~~~l  308 (347)
T 1jvb_A          241 VDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFGADL-HYHAPLITLSEIQFVGSLVGN-----------QSDFLGIMRL  308 (347)
T ss_dssp             EEEEEESCCCHHHHTTGGGGEEEEEEEEECCSSCCCC-CCCHHHHHHHTCEEEECCSCC-----------HHHHHHHHHH
T ss_pred             ceEEEECCCCHHHHHHHHHHHhcCCEEEEECCCCCCC-CCCHHHHHhCceEEEEEeccC-----------HHHHHHHHHH
Confidence            99999999988 4456899999999999999654233 566666778999999976532           4568899999


Q ss_pred             HHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         160 MRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       160 ~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      +++|++++.++++|+++++++||+.+.  +++..||+|+++
T Consensus       309 ~~~g~l~~~i~~~~~l~~~~~A~~~~~--~~~~~gKvvl~~  347 (347)
T 1jvb_A          309 AEAGKVKPMITKTMKLEEANEAIDNLE--NFKAIGRQVLIP  347 (347)
T ss_dssp             HHTTSSCCCCEEEEEGGGHHHHHHHHH--TTCCCSEEEEEC
T ss_pred             HHcCCCCceEEEEEcHHHHHHHHHHHH--CCCCcceEEecC
Confidence            999999998889999999999999998  888789999974

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=99.95  E-value=4.5e-27  Score=182.79  Aligned_cols=188  Identities=21%  Similarity=0.353  Sum_probs=150.8

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeCh--hHHHh-HHHhhCC
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE--EELRN-ISRDASI   78 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~--~~~~~-~~~~~~~   78 (202)
                      |.+.+++++|++|||+|++|++|++++|+|+..|++|++++++++    +++.++++|++.++++  .++.+ +++.+ +
T Consensus       155 l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~----~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~-~  229 (362)
T 2c0c_A          155 LKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDE----KSAFLKSLGCDRPINYKTEPVGTVLKQEY-P  229 (362)
T ss_dssp             HHHHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHH----HHHHHHHTTCSEEEETTTSCHHHHHHHHC-T
T ss_pred             HHHhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHH----HHHHHHHcCCcEEEecCChhHHHHHHHhc-C
Confidence            345678999999999998889999999999999999999887765    6788999999998875  34556 66655 4


Q ss_pred             CCCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCc-----CC---C-cccccccCeeEEEEechhHhhhcccHHHH
Q psy2961          79 PKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPV-----QI---P-TSAFIFKDITLRGHWMTRWQKENKESAER  149 (202)
Q Consensus        79 ~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~-----~~---~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  149 (202)
                      .++|++|||+|+..+..++++++++|+++.+|.......     .+   . ...++.+++++.|++...+..      ..
T Consensus       230 ~g~D~vid~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~------~~  303 (362)
T 2c0c_A          230 EGVDVVYESVGGAMFDLAVDALATKGRLIVIGFISGYQTPTGLSPVKAGTLPAKLLKKSASVQGFFLNHYLS------KY  303 (362)
T ss_dssp             TCEEEEEECSCTHHHHHHHHHEEEEEEEEECCCGGGTTSSSCCCCCCCTTHHHHHHHHTCEEEECCGGGCGG------GH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCCcCcccccccccccccHHHHHhhcceEEEEEhhhhhh------hH
Confidence            689999999999777779999999999999986543211     00   1 134667899999987654421      13


Q ss_pred             HHHHHHHHHHHHcCCCCCCcc--------eeechhhHHHHHHHHhhhcCCCCceEEEeecC
Q psy2961         150 KSMMNELTEMMRTGKLAAPAH--------KFVTLKNFQEALMNTMSIQGKSGVKYYIDFRQ  202 (202)
Q Consensus       150 ~~~~~~~~~~~~~g~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~~~  202 (202)
                      .+.++++++++++|++++.+.        +.++++++++||+.+.  +++..||+|+++++
T Consensus       304 ~~~~~~~~~l~~~g~l~~~~~~~~~~~~~~~~~l~~~~~A~~~~~--~~~~~gKvvv~~~~  362 (362)
T 2c0c_A          304 QAAMSHLLEMCVSGDLVCEVDLGDLSPEGRFTGLESIFRAVNYMY--MGKNTGKIVVELPH  362 (362)
T ss_dssp             HHHHHHHHHHHHTTCSCCCEECSTTSTTCSCBSTTHHHHHHHHHH--TTCCSBEEEEECCC
T ss_pred             HHHHHHHHHHHHCCCeEeeeccccccccccccCHHHHHHHHHHHH--cCCCCceEEEEcCC
Confidence            567999999999999998753        5689999999999998  77778999998753

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=99.95  E-value=8.6e-27  Score=180.37  Aligned_cols=178  Identities=19%  Similarity=0.205  Sum_probs=146.4

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcccHHHHHHHHHhcCCceEeCh--hHHHh-HHHhhCCC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTE--EELRN-ISRDASIP   79 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~--~~~~~-~~~~~~~~   79 (202)
                      +.+++ +|++|||+|+ |++|++++|+|+..|+ +|++++++++    +++.++++|++.++++  .++.+ +.+.+.+.
T Consensus       162 ~~~~~-~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~----~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~  235 (348)
T 2d8a_A          162 LAGPI-SGKSVLITGA-GPLGLLGIAVAKASGAYPVIVSEPSDF----RRELAKKVGADYVINPFEEDVVKEVMDITDGN  235 (348)
T ss_dssp             TTSCC-TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHH----HHHHHHHHTCSEEECTTTSCHHHHHHHHTTTS
T ss_pred             HhcCC-CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHH----HHHHHHHhCCCEEECCCCcCHHHHHHHHcCCC
Confidence            45678 9999999999 6999999999999999 8998887765    6888999999999985  35666 88888777


Q ss_pred             CCeEEEecCCCch-HHHHHHhcccCcEEEEEeccCCCCcCCCc-ccccccCeeEEEEechhHhhhcccHHHHHHHHHHHH
Q psy2961          80 KPKLALNCVGGNS-ATNLLRTLVSKGVMVTYGGMSREPVQIPT-SAFIFKDITLRGHWMTRWQKENKESAERKSMMNELT  157 (202)
Q Consensus        80 ~~d~vid~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  157 (202)
                      ++|++||++|.+. +..++++++++|+++.+|.... ...++. ..++.+++++.|+....          ..+.+++++
T Consensus       236 g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~~i~g~~~~~----------~~~~~~~~~  304 (348)
T 2d8a_A          236 GVDVFLEFSGAPKALEQGLQAVTPAGRVSLLGLYPG-KVTIDFNNLIIFKALTIYGITGRH----------LWETWYTVS  304 (348)
T ss_dssp             CEEEEEECSCCHHHHHHHHHHEEEEEEEEECCCCSS-CCCCCHHHHTTTTTCEEEECCCCC----------SHHHHHHHH
T ss_pred             CCCEEEECCCCHHHHHHHHHHHhcCCEEEEEccCCC-CcccCchHHHHhCCcEEEEecCCC----------cHHHHHHHH
Confidence            8999999999854 4568999999999999996543 345565 66778999999976431          034588999


Q ss_pred             HHHHcCCC--CCCcceeec-hhhHHHHHHHHhhhcCCCCceEEEeec
Q psy2961         158 EMMRTGKL--AAPAHKFVT-LKNFQEALMNTMSIQGKSGVKYYIDFR  201 (202)
Q Consensus       158 ~~~~~g~~--~~~~~~~~~-~~~~~~a~~~~~~~~~~~~gkvv~~~~  201 (202)
                      +++++|++  ++.++++|| ++++++||+.+.  + ...+|+|++++
T Consensus       305 ~l~~~g~i~~~~~i~~~~~gl~~~~~A~~~~~--~-~~~gKvvi~~~  348 (348)
T 2d8a_A          305 RLLQSGKLNLDPIITHKYKGFDKYEEAFELMR--A-GKTGKVVFMLK  348 (348)
T ss_dssp             HHHHHTCCCCTTTEEEEEESSTTHHHHHHHHH--T-TCCSEEEEEC-
T ss_pred             HHHHcCCCChHHhheeeCCCHHHHHHHHHHHh--C-CCceEEEEeeC
Confidence            99999996  455778999 999999999998  6 56789999874

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=99.95  E-value=3.8e-27  Score=182.01  Aligned_cols=176  Identities=19%  Similarity=0.222  Sum_probs=145.2

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcccHHHHHHHHHhcCCceEeChh--HHHh-HHHhhCCC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRDASIP   79 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~--~~~~-~~~~~~~~   79 (202)
                      +.+++ +|++|||+|+ |++|++++|+|+..|+ +|++++++++    +++.++++ ++.++++.  ++.+ +++.+ +.
T Consensus       159 ~~~~~-~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~----~~~~~~~l-a~~v~~~~~~~~~~~~~~~~-~~  230 (343)
T 2dq4_A          159 AGSGV-SGKSVLITGA-GPIGLMAAMVVRASGAGPILVSDPNPY----RLAFARPY-ADRLVNPLEEDLLEVVRRVT-GS  230 (343)
T ss_dssp             STTCC-TTSCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHH----HHGGGTTT-CSEEECTTTSCHHHHHHHHH-SS
T ss_pred             HhCCC-CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHH----HHHHHHHh-HHhccCcCccCHHHHHHHhc-CC
Confidence            36788 9999999999 6999999999999999 8999887765    67888889 99998853  5666 77777 67


Q ss_pred             CCeEEEecCCCc-hHHHHHHhcccCcEEEEEeccCCCCcCCCc-ccccccCeeEEEEechhHhhhcccHHHHHHHHHHHH
Q psy2961          80 KPKLALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPT-SAFIFKDITLRGHWMTRWQKENKESAERKSMMNELT  157 (202)
Q Consensus        80 ~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  157 (202)
                      ++|++||++|++ .+...+++|+++|+++.+|... ....++. ..++.+++++.|+....          ..+.+++++
T Consensus       231 g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~-~~~~~~~~~~~~~~~~~i~g~~~~~----------~~~~~~~~~  299 (343)
T 2dq4_A          231 GVEVLLEFSGNEAAIHQGLMALIPGGEARILGIPS-DPIRFDLAGELVMRGITAFGIAGRR----------LWQTWMQGT  299 (343)
T ss_dssp             CEEEEEECSCCHHHHHHHHHHEEEEEEEEECCCCS-SCEEECHHHHTGGGTCEEEECCSCC----------TTHHHHHHH
T ss_pred             CCCEEEECCCCHHHHHHHHHHHhcCCEEEEEecCC-CCceeCcHHHHHhCceEEEEeecCC----------CHHHHHHHH
Confidence            899999999984 4556899999999999998643 3345565 66788999999976431          134588999


Q ss_pred             HHHHcCCCC--CCcceeechhhHHHHHHHHhhhcCCCCceEEEeec
Q psy2961         158 EMMRTGKLA--APAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  201 (202)
Q Consensus       158 ~~~~~g~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~~  201 (202)
                      +++++|+++  +.++++|+++++++||+.+.  +++. +|+|++++
T Consensus       300 ~l~~~g~~~~~~~i~~~~~l~~~~~A~~~~~--~~~~-gKvv~~~~  342 (343)
T 2dq4_A          300 ALVYSGRVDLSPLLTHRLPLSRYREAFGLLA--SGQA-VKVILDPK  342 (343)
T ss_dssp             HHHHHTSSCCGGGEEEEEEGGGHHHHHHHHH--HSSC-SEEEEETT
T ss_pred             HHHHcCCCChHHheeEEecHHHHHHHHHHHh--cCCc-eEEEEeeC
Confidence            999999964  55679999999999999998  7766 99999876

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=99.95  E-value=2.1e-26  Score=177.19  Aligned_cols=187  Identities=22%  Similarity=0.343  Sum_probs=151.2

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeCh---hHHHh-HHHhhC
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE---EELRN-ISRDAS   77 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~---~~~~~-~~~~~~   77 (202)
                      |.+.+++++|++|||+|++|++|++++|+++..|++|++++++++    +.+.++++|++.++|+   .++.+ +.+.+.
T Consensus       137 l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~----~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~  212 (333)
T 1v3u_A          137 LLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDE----KIAYLKQIGFDAAFNYKTVNSLEEALKKASP  212 (333)
T ss_dssp             HHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHH----HHHHHHHTTCSEEEETTSCSCHHHHHHHHCT
T ss_pred             HHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHhcCCcEEEecCCHHHHHHHHHHHhC
Confidence            345678999999999999889999999999999999998887765    5777788999888874   45566 666665


Q ss_pred             CCCCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCC-----c-CCCcccccccCeeEEEEechhHhhhcccHHHHHH
Q psy2961          78 IPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREP-----V-QIPTSAFIFKDITLRGHWMTRWQKENKESAERKS  151 (202)
Q Consensus        78 ~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~-----~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  151 (202)
                       +++|++||++|++.+..++++++++|+++.+|......     . ..+...++.+++++.|+....+..     ....+
T Consensus       213 -~~~d~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~-----~~~~~  286 (333)
T 1v3u_A          213 -DGYDCYFDNVGGEFLNTVLSQMKDFGKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVYRWQG-----DVREK  286 (333)
T ss_dssp             -TCEEEEEESSCHHHHHHHHTTEEEEEEEEECCCCC-------CCBCCCHHHHHHTTCEEEECCGGGCCT-----HHHHH
T ss_pred             -CCCeEEEECCChHHHHHHHHHHhcCCEEEEEeccccccCCCCCCCCcCHHHHhhcCceEEEEehhhcch-----HHHHH
Confidence             58999999999887777899999999999998654311     1 124445778899999987654321     34467


Q ss_pred             HHHHHHHHHHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         152 MMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       152 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                      .++++++++++|++++.+..+++++++++||+.+.  +++..||+|+++
T Consensus       287 ~~~~~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~--~~~~~gKvvl~~  333 (333)
T 1v3u_A          287 ALRDLMKWVLEGKIQYHEHVTKGFENMPAAFIEML--NGANLGKAVVTA  333 (333)
T ss_dssp             HHHHHHHHHHTTSSCCCEEEEECGGGHHHHHHHHH--TTCCSBEEEEEC
T ss_pred             HHHHHHHHHHCCCccCccccccCHHHHHHHHHHHH--cCCCCceEEEeC
Confidence            89999999999999998777889999999999998  777789999874

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=99.95  E-value=6.2e-27  Score=181.43  Aligned_cols=179  Identities=18%  Similarity=0.229  Sum_probs=145.5

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChh---HHHh-HHHhhC--
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE---ELRN-ISRDAS--   77 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~---~~~~-~~~~~~--   77 (202)
                      +.+++++|++|||+|+ |++|++++|+|+.+|++|+++.++++    +++.++++|++.++++.   ++.+ +.+.+.  
T Consensus       162 ~~~~~~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~----~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~  236 (352)
T 1e3j_A          162 RRAGVQLGTTVLVIGA-GPIGLVSVLAAKAYGAFVVCTARSPR----RLEVAKNCGADVTLVVDPAKEEESSIIERIRSA  236 (352)
T ss_dssp             HHHTCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEcCCHH----HHHHHHHhCCCEEEcCcccccHHHHHHHHhccc
Confidence            4568999999999998 59999999999999999888776665    68899999999988743   4445 666664  


Q ss_pred             -CCCCeEEEecCCCch-HHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHH
Q psy2961          78 -IPKPKLALNCVGGNS-ATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNE  155 (202)
Q Consensus        78 -~~~~d~vid~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  155 (202)
                       +.++|++||++|++. +..++++++++|+++.+|... ....++...++.+++++.++..+            .+.+++
T Consensus       237 ~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~-~~~~~~~~~~~~~~~~i~g~~~~------------~~~~~~  303 (352)
T 1e3j_A          237 IGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGS-QMVTVPLVNACAREIDIKSVFRY------------CNDYPI  303 (352)
T ss_dssp             SSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCS-SCCCCCHHHHHTTTCEEEECCSC------------SSCHHH
T ss_pred             cCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEecCC-CCccccHHHHHhcCcEEEEeccc------------hHHHHH
Confidence             568999999999875 456899999999999998533 33456666778899999987643            123888


Q ss_pred             HHHHHHcCCCCC--CcceeechhhHHHHHHHHhhhcCC-CCceEEEeecC
Q psy2961         156 LTEMMRTGKLAA--PAHKFVTLKNFQEALMNTMSIQGK-SGVKYYIDFRQ  202 (202)
Q Consensus       156 ~~~~~~~g~~~~--~~~~~~~~~~~~~a~~~~~~~~~~-~~gkvv~~~~~  202 (202)
                      +++++.+|++++  .++++|+++++++||+.+.  +++ ..+|+|+++++
T Consensus       304 ~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~--~~~~~~~Kvvi~~~~  351 (352)
T 1e3j_A          304 ALEMVASGRCNVKQLVTHSFKLEQTVDAFEAAR--KKADNTIKVMISCRQ  351 (352)
T ss_dssp             HHHHHHTTSCCCGGGEEEEEEGGGHHHHHHHHH--HCCTTCSEEEEECCC
T ss_pred             HHHHHHcCCCChHHheeEEecHHHHHHHHHHHh--cCCCCceEEEEecCC
Confidence            999999999764  4678999999999999998  776 68999998863

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=99.95  E-value=1.9e-27  Score=185.34  Aligned_cols=178  Identities=16%  Similarity=0.260  Sum_probs=144.3

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcccHHHHHHHHHhcCCceEeCh--hHHHh-HHH---hh
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTE--EELRN-ISR---DA   76 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~--~~~~~-~~~---~~   76 (202)
                      +.+++++|++|||+|+ |++|++++|+|+.+|+ +|+++.++++    +++.++++|++.++++  .++.+ +.+   .+
T Consensus       176 ~~~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~----~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~  250 (370)
T 4ej6_A          176 DLSGIKAGSTVAILGG-GVIGLLTVQLARLAGATTVILSTRQAT----KRRLAEEVGATATVDPSAGDVVEAIAGPVGLV  250 (370)
T ss_dssp             HHHTCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCHH----HHHHHHHHTCSEEECTTSSCHHHHHHSTTSSS
T ss_pred             HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHH----HHHHHHHcCCCEEECCCCcCHHHHHHhhhhcc
Confidence            4678999999999998 5999999999999999 6666665554    6889999999999985  45666 766   55


Q ss_pred             CCCCCeEEEecCCCch-HHHHHHhcccCcEEEEEeccCCC-CcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHH
Q psy2961          77 SIPKPKLALNCVGGNS-ATNLLRTLVSKGVMVTYGGMSRE-PVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMN  154 (202)
Q Consensus        77 ~~~~~d~vid~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  154 (202)
                      ++ ++|+||||+|++. +..++++++++|+++.+|..... ...++...++.+++++.|++...            ..++
T Consensus       251 ~g-g~Dvvid~~G~~~~~~~~~~~l~~~G~vv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~~------------~~~~  317 (370)
T 4ej6_A          251 PG-GVDVVIECAGVAETVKQSTRLAKAGGTVVILGVLPQGEKVEIEPFDILFRELRVLGSFINP------------FVHR  317 (370)
T ss_dssp             TT-CEEEEEECSCCHHHHHHHHHHEEEEEEEEECSCCCTTCCCCCCHHHHHHTTCEEEECCSCT------------TCHH
T ss_pred             CC-CCCEEEECCCCHHHHHHHHHHhccCCEEEEEeccCCCCccccCHHHHHhCCcEEEEeccCh------------HHHH
Confidence            55 8999999999754 55689999999999999965542 44677777889999999987542            2278


Q ss_pred             HHHHHHHcCCCCC--CcceeechhhHHHHHHHHhhhcCC-CCceEEEeec
Q psy2961         155 ELTEMMRTGKLAA--PAHKFVTLKNFQEALMNTMSIQGK-SGVKYYIDFR  201 (202)
Q Consensus       155 ~~~~~~~~g~~~~--~~~~~~~~~~~~~a~~~~~~~~~~-~~gkvv~~~~  201 (202)
                      ++++++++|++++  .++++||++++++||+.+.  ++. ..+|++++++
T Consensus       318 ~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~--~~~~~~~kvv~~~~  365 (370)
T 4ej6_A          318 RAADLVATGAIEIDRMISRRISLDEAPDVISNPA--AAGEVKVLVIPSAE  365 (370)
T ss_dssp             HHHHHHHTTCSCCGGGEEEEECGGGHHHHHHSCC--CTTCSEEEECCC--
T ss_pred             HHHHHHHcCCCChhHcEEEEEEHHHHHHHHHHHH--cCCCCeEEEEEccc
Confidence            8999999999975  4789999999999999998  555 4579988875

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=99.95  E-value=7.5e-27  Score=180.68  Aligned_cols=171  Identities=16%  Similarity=0.256  Sum_probs=142.5

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEE
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLA   84 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~v   84 (202)
                      +.++++|++|||+|+ |++|++++|+|+..|++|++++++++    +++.++++|++.++ . +...+.     .++|++
T Consensus       171 ~~~~~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~----~~~~~~~lGa~~v~-~-~~~~~~-----~~~D~v  238 (348)
T 3two_A          171 FSKVTKGTKVGVAGF-GGLGSMAVKYAVAMGAEVSVFARNEH----KKQDALSMGVKHFY-T-DPKQCK-----EELDFI  238 (348)
T ss_dssp             HTTCCTTCEEEEESC-SHHHHHHHHHHHHTTCEEEEECSSST----THHHHHHTTCSEEE-S-SGGGCC-----SCEEEE
T ss_pred             hcCCCCCCEEEEECC-cHHHHHHHHHHHHCCCeEEEEeCCHH----HHHHHHhcCCCeec-C-CHHHHh-----cCCCEE
Confidence            458899999999998 59999999999999999999888877    58899999999988 2 211121     289999


Q ss_pred             EecCCCc-hHHHHHHhcccCcEEEEEeccCCCCcC-CCccccc-ccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHHH
Q psy2961          85 LNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQ-IPTSAFI-FKDITLRGHWMTRWQKENKESAERKSMMNELTEMMR  161 (202)
Q Consensus        85 id~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~-~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (202)
                      ||++|++ .+..++++++++|+++.+|........ ++...++ .+++++.|+....           .+.+.+++++++
T Consensus       239 id~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~-----------~~~~~~~~~l~~  307 (348)
T 3two_A          239 ISTIPTHYDLKDYLKLLTYNGDLALVGLPPVEVAPVLSVFDFIHLGNRKVYGSLIGG-----------IKETQEMVDFSI  307 (348)
T ss_dssp             EECCCSCCCHHHHHTTEEEEEEEEECCCCCGGGCCEEEHHHHHHTCSCEEEECCSCC-----------HHHHHHHHHHHH
T ss_pred             EECCCcHHHHHHHHHHHhcCCEEEEECCCCCCCcccCCHHHHHhhCCeEEEEEecCC-----------HHHHHHHHHHHH
Confidence            9999998 667799999999999999865423333 5555666 8999999987653           345888999999


Q ss_pred             cCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEeec
Q psy2961         162 TGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  201 (202)
Q Consensus       162 ~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~~  201 (202)
                      +|++++.+ ++|+++++++||+.+.  +++..||+|++++
T Consensus       308 ~g~l~~~~-~~~~l~~~~~A~~~~~--~~~~~gKvVi~~~  344 (348)
T 3two_A          308 KHNIYPEI-DLILGKDIDTAYHNLT--HGKAKFRYVIDMK  344 (348)
T ss_dssp             HTTCCCCE-EEECGGGHHHHHHHHH--TTCCCSEEEEEGG
T ss_pred             hCCCCceE-EEEEHHHHHHHHHHHH--cCCCceEEEEecC
Confidence            99999964 8999999999999999  8888899999986

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=99.95  E-value=2e-26  Score=178.21  Aligned_cols=179  Identities=17%  Similarity=0.244  Sum_probs=148.2

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeCh---hHHHh-HHHhhCCCC
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE---EELRN-ISRDASIPK   80 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~---~~~~~-~~~~~~~~~   80 (202)
                      ..++++|++|||+|++|++|++++|+++..|++|+++.++++    +.+.++++|++.++|+   .++.+ +.+.+.+ +
T Consensus       164 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~----~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~-~  238 (347)
T 2hcy_A          164 SANLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEG----KEELFRSIGGEVFIDFTKEKDIVGAVLKATDG-G  238 (347)
T ss_dssp             TTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTT----HHHHHHHTTCCEEEETTTCSCHHHHHHHHHTS-C
T ss_pred             hcCCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHH----HHHHHHHcCCceEEecCccHhHHHHHHHHhCC-C
Confidence            347899999999999889999999999999999999887776    5688888999988864   35666 7777766 8


Q ss_pred             CeEEEecCCCc-hHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHH
Q psy2961          81 PKLALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEM  159 (202)
Q Consensus        81 ~d~vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (202)
                      +|++||++|.. .+..++++|+++|+++.+|........++...++.+++++.|+....           .+.+++++++
T Consensus       239 ~D~vi~~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~-----------~~~~~~~~~l  307 (347)
T 2hcy_A          239 AHGVINVSVSEAAIEASTRYVRANGTTVLVGMPAGAKCCSDVFNQVVKSISIVGSYVGN-----------RADTREALDF  307 (347)
T ss_dssp             EEEEEECSSCHHHHHHHTTSEEEEEEEEECCCCTTCEEEEEHHHHHHTTCEEEECCCCC-----------HHHHHHHHHH
T ss_pred             CCEEEECCCcHHHHHHHHHHHhcCCEEEEEeCCCCCCCCCCHHHHhhCCcEEEEccCCC-----------HHHHHHHHHH
Confidence            99999999984 44568899999999999996654334455556778999999976432           3458889999


Q ss_pred             HHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEeecC
Q psy2961         160 MRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFRQ  202 (202)
Q Consensus       160 ~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~~~  202 (202)
                      +++|++++. +++|+++++++||+.+.  +++..||+|+++++
T Consensus       308 ~~~g~l~~~-~~~~~l~~~~~A~~~~~--~~~~~gKvvv~~~~  347 (347)
T 2hcy_A          308 FARGLVKSP-IKVVGLSTLPEIYEKME--KGQIVGRYVVDTSK  347 (347)
T ss_dssp             HHTTSCCCC-EEEEEGGGHHHHHHHHH--TTCCSSEEEEESCC
T ss_pred             HHhCCCccc-eEEEcHHHHHHHHHHHH--cCCcceeEEEecCC
Confidence            999999986 57999999999999998  77778999999864

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=99.95  E-value=5.4e-27  Score=182.27  Aligned_cols=174  Identities=14%  Similarity=0.149  Sum_probs=143.3

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhCCCCCeEE
Q psy2961           6 NSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLA   84 (202)
Q Consensus         6 ~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~~~~~d~v   84 (202)
                      +++++|++|||+|+ |++|++++|+|+.+|++|++++++++    +++.++++|++.++++.+..+ .....  .++|++
T Consensus       175 ~~~~~g~~VlV~Ga-G~vG~~~~qlak~~Ga~Vi~~~~~~~----~~~~~~~lGa~~v~~~~~~~~~~~~~~--~~~D~v  247 (360)
T 1piw_A          175 NGCGPGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSR----KREDAMKMGADHYIATLEEGDWGEKYF--DTFDLI  247 (360)
T ss_dssp             TTCSTTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSST----THHHHHHHTCSEEEEGGGTSCHHHHSC--SCEEEE
T ss_pred             cCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHH----HHHHHHHcCCCEEEcCcCchHHHHHhh--cCCCEE
Confidence            68999999999999 69999999999999999999988776    578899999999998643211 22222  489999


Q ss_pred             EecCCC---chHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHHH
Q psy2961          85 LNCVGG---NSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMR  161 (202)
Q Consensus        85 id~~g~---~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (202)
                      ||++|+   ..+..++++|+++|+++.+|.... ...++...++.+++++.|+....           .+.+++++++++
T Consensus       248 id~~g~~~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~i~g~~~~~-----------~~~~~~~~~l~~  315 (360)
T 1piw_A          248 VVCASSLTDIDFNIMPKAMKVGGRIVSISIPEQ-HEMLSLKPYGLKAVSISYSALGS-----------IKELNQLLKLVS  315 (360)
T ss_dssp             EECCSCSTTCCTTTGGGGEEEEEEEEECCCCCS-SCCEEECGGGCBSCEEEECCCCC-----------HHHHHHHHHHHH
T ss_pred             EECCCCCcHHHHHHHHHHhcCCCEEEEecCCCC-ccccCHHHHHhCCeEEEEEecCC-----------HHHHHHHHHHHH
Confidence            999998   455568999999999999986543 11455566788999999976532           355889999999


Q ss_pred             cCCCCCCcceeechhh--HHHHHHHHhhhcCCCCceEEEeec
Q psy2961         162 TGKLAAPAHKFVTLKN--FQEALMNTMSIQGKSGVKYYIDFR  201 (202)
Q Consensus       162 ~g~~~~~~~~~~~~~~--~~~a~~~~~~~~~~~~gkvv~~~~  201 (202)
                      +|++++.+ ++|++++  +++||+.+.  +++..||+|++++
T Consensus       316 ~g~l~~~i-~~~~l~~~~~~~A~~~~~--~~~~~gKvvi~~~  354 (360)
T 1piw_A          316 EKDIKIWV-ETLPVGEAGVHEAFERME--KGDVRYRFTLVGY  354 (360)
T ss_dssp             HTTCCCCE-EEEESSHHHHHHHHHHHH--HTCCSSEEEEECC
T ss_pred             hCCCcceE-EEEeccHhHHHHHHHHHH--CCCCceEEEEecC
Confidence            99999887 9999999  999999998  7777899999874

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=99.95  E-value=2e-27  Score=182.04  Aligned_cols=172  Identities=19%  Similarity=0.229  Sum_probs=140.6

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhH---HHh-HHHhhCCC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE---LRN-ISRDASIP   79 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~---~~~-~~~~~~~~   79 (202)
                      +.+++++|++|||+|++|++|++++|+|+..|++|+++++. +    +++.++++|++.++++.+   +.+ +      .
T Consensus       146 ~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~-~----~~~~~~~lGa~~~i~~~~~~~~~~~~------~  214 (321)
T 3tqh_A          146 NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASK-R----NHAFLKALGAEQCINYHEEDFLLAIS------T  214 (321)
T ss_dssp             HHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECH-H----HHHHHHHHTCSEEEETTTSCHHHHCC------S
T ss_pred             HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEecc-c----hHHHHHHcCCCEEEeCCCcchhhhhc------c
Confidence            56889999999999988899999999999999999888743 2    478899999999997643   333 3      5


Q ss_pred             CCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHH
Q psy2961          80 KPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEM  159 (202)
Q Consensus        80 ~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (202)
                      ++|++|||+|++.+..++++++++|+++.+|......   ....+..+++++.++....          ..+.++++.++
T Consensus       215 g~D~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~---~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l  281 (321)
T 3tqh_A          215 PVDAVIDLVGGDVGIQSIDCLKETGCIVSVPTITAGR---VIEVAKQKHRRAFGLLKQF----------NIEELHYLGKL  281 (321)
T ss_dssp             CEEEEEESSCHHHHHHHGGGEEEEEEEEECCSTTHHH---HHHHHHHTTCEEECCCCCC----------CHHHHHHHHHH
T ss_pred             CCCEEEECCCcHHHHHHHHhccCCCEEEEeCCCCchh---hhhhhhhcceEEEEEecCC----------CHHHHHHHHHH
Confidence            7999999999998877999999999999997443211   1123456778887753211          14568999999


Q ss_pred             HHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEeec
Q psy2961         160 MRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  201 (202)
Q Consensus       160 ~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~~  201 (202)
                      +++|++++.++++|+++++++||+.+.  +++..||+|++++
T Consensus       282 ~~~g~l~~~i~~~~~l~~~~~A~~~~~--~~~~~gKvvl~~~  321 (321)
T 3tqh_A          282 VSEDKLRIEISRIFQLSEAVTAHELLE--TGHVRGKLVFKVR  321 (321)
T ss_dssp             HHTTSSCCCEEEEECGGGHHHHHHHHH--TTCCCSEEEEECC
T ss_pred             HHCCCcccccccEEcHHHHHHHHHHHH--cCCCCceEEEEeC
Confidence            999999999999999999999999999  8888999999874

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=99.95  E-value=1.8e-26  Score=179.15  Aligned_cols=175  Identities=15%  Similarity=0.186  Sum_probs=142.8

Q ss_pred             ccCCC-CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHH-hcCCceEeChhHHHhHHHhhCCCCCe
Q psy2961           5 YNSLS-PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK-SLGADYVFTEEELRNISRDASIPKPK   82 (202)
Q Consensus         5 ~~~~~-~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~-~lg~~~v~~~~~~~~~~~~~~~~~~d   82 (202)
                      ..+++ +|++|||+|+ |++|++++|+|+.+|++|++++++++    +++.++ ++|++.++++.+...+.+.+  .++|
T Consensus       174 ~~~~~~~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~~~~~----~~~~~~~~lGa~~vi~~~~~~~~~~~~--~g~D  246 (357)
T 2cf5_A          174 HFGLKQPGLRGGILGL-GGVGHMGVKIAKAMGHHVTVISSSNK----KREEALQDLGADDYVIGSDQAKMSELA--DSLD  246 (357)
T ss_dssp             HTSTTSTTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSTT----HHHHHHTTSCCSCEEETTCHHHHHHST--TTEE
T ss_pred             hcCCCCCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeCChH----HHHHHHHHcCCceeeccccHHHHHHhc--CCCC
Confidence            35677 9999999997 59999999999999999999988876    577777 89999999876532255554  4799


Q ss_pred             EEEecCCCc-hHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHHH
Q psy2961          83 LALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMR  161 (202)
Q Consensus        83 ~vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (202)
                      ++||++|++ .+..++++++++|+++.+|........++.. ++.+++++.|++...           .+.+++++++++
T Consensus       247 ~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~-~~~~~~~i~g~~~~~-----------~~~~~~~~~l~~  314 (357)
T 2cf5_A          247 YVIDTVPVHHALEPYLSLLKLDGKLILMGVINNPLQFLTPL-LMLGRKVITGSFIGS-----------MKETEEMLEFCK  314 (357)
T ss_dssp             EEEECCCSCCCSHHHHTTEEEEEEEEECSCCSSCCCCCHHH-HHHHTCEEEECCSCC-----------HHHHHHHHHHHH
T ss_pred             EEEECCCChHHHHHHHHHhccCCEEEEeCCCCCCccccCHH-HHhCccEEEEEccCC-----------HHHHHHHHHHHH
Confidence            999999986 4567899999999999998654322114444 778999999987542           345888999999


Q ss_pred             cCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEeec
Q psy2961         162 TGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  201 (202)
Q Consensus       162 ~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~~  201 (202)
                      +|++++.+ ++||++++++||+.+.  +++..||+|++++
T Consensus       315 ~g~l~~~~-~~~~l~~~~~A~~~~~--~~~~~gKvvi~~~  351 (357)
T 2cf5_A          315 EKGLSSII-EVVKMDYVNTAFERLE--KNDVRYRFVVDVE  351 (357)
T ss_dssp             HTTCCCCE-EEEEGGGHHHHHHHHH--TTCSSSEEEEETT
T ss_pred             cCCCCCce-EEEeHHHHHHHHHHHH--CCCCceEEEEeCC
Confidence            99999875 7999999999999998  7888899999875

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=99.94  E-value=1.6e-26  Score=179.95  Aligned_cols=175  Identities=18%  Similarity=0.248  Sum_probs=139.9

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEE
Q psy2961           6 NSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLAL   85 (202)
Q Consensus         6 ~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vi   85 (202)
                      .++++|++|||+|+| ++|++++|+|+.+|++|++++++++    +++.++++|++.++++.+...+.+..  .++|++|
T Consensus       190 ~~~~~g~~VlV~GaG-~vG~~aiqlak~~Ga~Vi~~~~~~~----~~~~a~~lGa~~vi~~~~~~~~~~~~--~g~Dvvi  262 (369)
T 1uuf_A          190 WQAGPGKKVGVVGIG-GLGHMGIKLAHAMGAHVVAFTTSEA----KREAAKALGADEVVNSRNADEMAAHL--KSFDFIL  262 (369)
T ss_dssp             TTCCTTCEEEEECCS-HHHHHHHHHHHHTTCEEEEEESSGG----GHHHHHHHTCSEEEETTCHHHHHTTT--TCEEEEE
T ss_pred             cCCCCCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHcCCcEEeccccHHHHHHhh--cCCCEEE
Confidence            578999999999985 8999999999999999998888776    57889999999998764321133322  5899999


Q ss_pred             ecCCCch-HHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHHHcCC
Q psy2961          86 NCVGGNS-ATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGK  164 (202)
Q Consensus        86 d~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  164 (202)
                      |++|++. +...+++++++|+++.+|........++...++.+++++.|+....           .+.++++++++++|+
T Consensus       263 d~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~-----------~~~~~~~~~l~~~g~  331 (369)
T 1uuf_A          263 NTVAAPHNLDDFTTLLKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIGG-----------IPETQEMLDFCAEHG  331 (369)
T ss_dssp             ECCSSCCCHHHHHTTEEEEEEEEECCCC-------CHHHHHTTTCEEEECCSCC-----------HHHHHHHHHHHHHHT
T ss_pred             ECCCCHHHHHHHHHHhccCCEEEEeccCCCCccccCHHHHHhCCcEEEEeecCC-----------HHHHHHHHHHHHhCC
Confidence            9999874 5668999999999999986543221455556778999999986542           345788999999999


Q ss_pred             CCCCcceeechhhHHHHHHHHhhhcCCCCceEEEeec
Q psy2961         165 LAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  201 (202)
Q Consensus       165 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~~  201 (202)
                      +++.+ ++||++++++||+.+.  +++..+|+|++++
T Consensus       332 i~~~i-~~~~l~~~~~A~~~~~--~~~~~gKvvi~~~  365 (369)
T 1uuf_A          332 IVADI-EMIRADQINEAYERML--RGDVKYRFVIDNR  365 (369)
T ss_dssp             CCCCE-EEECGGGHHHHHHHHH--TTCSSSEEEEEGG
T ss_pred             CCcce-EEEcHHHHHHHHHHHH--cCCCceEEEEecC
Confidence            99875 5799999999999998  7777899999875

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=99.94  E-value=1.7e-26  Score=178.13  Aligned_cols=175  Identities=17%  Similarity=0.250  Sum_probs=144.8

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChh--HHHh-HHHhhCCCCCe
Q psy2961           6 NSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRDASIPKPK   82 (202)
Q Consensus         6 ~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~--~~~~-~~~~~~~~~~d   82 (202)
                      .++++|++|||+|+| ++|++++|+|+..|++|++++++++    +++.++++|++.++++.  ++.+ +.+.+  .++|
T Consensus       160 ~~~~~g~~VlV~GaG-~vG~~~~~~a~~~Ga~Vi~~~~~~~----~~~~~~~lGa~~~~d~~~~~~~~~~~~~~--~~~d  232 (339)
T 1rjw_A          160 TGAKPGEWVAIYGIG-GLGHVAVQYAKAMGLNVVAVDIGDE----KLELAKELGADLVVNPLKEDAAKFMKEKV--GGVH  232 (339)
T ss_dssp             HTCCTTCEEEEECCS-TTHHHHHHHHHHTTCEEEEECSCHH----HHHHHHHTTCSEEECTTTSCHHHHHHHHH--SSEE
T ss_pred             cCCCCCCEEEEECCC-HHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHCCCCEEecCCCccHHHHHHHHh--CCCC
Confidence            478999999999995 7999999999999999998887765    67888999999988753  5556 76666  4899


Q ss_pred             EEEecCCCc-hHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHHH
Q psy2961          83 LALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMR  161 (202)
Q Consensus        83 ~vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (202)
                      ++||++|.+ .+...+++++++|+++.+|.... ...++...++.+++++.|+....           .+.++++++++.
T Consensus       233 ~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~g~~~~~-----------~~~~~~~~~l~~  300 (339)
T 1rjw_A          233 AAVVTAVSKPAFQSAYNSIRRGGACVLVGLPPE-EMPIPIFDTVLNGIKIIGSIVGT-----------RKDLQEALQFAA  300 (339)
T ss_dssp             EEEESSCCHHHHHHHHHHEEEEEEEEECCCCSS-EEEEEHHHHHHTTCEEEECCSCC-----------HHHHHHHHHHHH
T ss_pred             EEEECCCCHHHHHHHHHHhhcCCEEEEecccCC-CCccCHHHHHhCCcEEEEeccCC-----------HHHHHHHHHHHH
Confidence            999999984 45568999999999999986543 23455556677899999876432           345889999999


Q ss_pred             cCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEeecC
Q psy2961         162 TGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFRQ  202 (202)
Q Consensus       162 ~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~~~  202 (202)
                      +|++++. +++|+++++++||+.+.  +++..||+|+++++
T Consensus       301 ~g~l~~~-~~~~~l~~~~~A~~~~~--~~~~~gKvvi~~~~  338 (339)
T 1rjw_A          301 EGKVKTI-IEVQPLEKINEVFDRML--KGQINGRVVLTLED  338 (339)
T ss_dssp             TTSCCCC-EEEEEGGGHHHHHHHHH--TTCCSSEEEEECCC
T ss_pred             cCCCCcc-EEEEcHHHHHHHHHHHH--cCCCceEEEEecCC
Confidence            9999986 57999999999999998  77778999998863

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=99.94  E-value=2.6e-26  Score=180.60  Aligned_cols=177  Identities=17%  Similarity=0.137  Sum_probs=140.6

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcccHHHHHHHHHhcCCceEeChh--H-HHh-HHHhhCCC
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTEE--E-LRN-ISRDASIP   79 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~--~-~~~-~~~~~~~~   79 (202)
                      .+++++|++|||+|+ |++|++++|+|+.+|+ +|+++..+++    +++.++++|++ ++++.  + +.+ +++.+++.
T Consensus       180 ~~~~~~g~~VlV~Ga-G~vG~~aiqlAk~~Ga~~Vi~~~~~~~----~~~~a~~lGa~-~i~~~~~~~~~~~v~~~t~g~  253 (398)
T 1kol_A          180 TAGVGPGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPA----RLAHAKAQGFE-IADLSLDTPLHEQIAALLGEP  253 (398)
T ss_dssp             HTTCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHH----HHHHHHHTTCE-EEETTSSSCHHHHHHHHHSSS
T ss_pred             HcCCCCCCEEEEECC-cHHHHHHHHHHHHCCCCeEEEEcCCHH----HHHHHHHcCCc-EEccCCcchHHHHHHHHhCCC
Confidence            578999999999997 5999999999999999 5677666654    78999999997 66643  2 666 88888777


Q ss_pred             CCeEEEecCCCc----------------hHHHHHHhcccCcEEEEEeccC-CC-----------CcCCCcccccccCeeE
Q psy2961          80 KPKLALNCVGGN----------------SATNLLRTLVSKGVMVTYGGMS-RE-----------PVQIPTSAFIFKDITL  131 (202)
Q Consensus        80 ~~d~vid~~g~~----------------~~~~~~~~l~~~G~~v~~g~~~-~~-----------~~~~~~~~~~~~~~~~  131 (202)
                      ++|+||||+|++                .+..++++++++|+++.+|... +.           ...++...++.+++++
T Consensus       254 g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (398)
T 1kol_A          254 EVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYVTEDPGAVDAAAKIGSLSIRFGLGWAKSHSF  333 (398)
T ss_dssp             CEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCCSCCTTCSSHHHHTTCCCCCHHHHHHTTCEE
T ss_pred             CCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEeccccCCcccccccccccccccccHHHHhhcccEE
Confidence            899999999986                3456899999999999998542 11           1233444566788888


Q ss_pred             EEEechhHhhhcccHHHHHHHHHHHHHHHHcCCCC---CCcceeechhhHHHHHHHHhhhcCCCCceEEEeec
Q psy2961         132 RGHWMTRWQKENKESAERKSMMNELTEMMRTGKLA---APAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  201 (202)
Q Consensus       132 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~~  201 (202)
                      .+....           ..+.++++++++.+|+++   +.++++|+++++++||+.+.  +++. +|+|++++
T Consensus       334 ~g~~~~-----------~~~~~~~~~~l~~~g~l~~~~~~i~~~~~l~~~~~A~~~~~--~~~~-gKvvi~~~  392 (398)
T 1kol_A          334 HTGQTP-----------VMKYNRALMQAIMWDRINIAEVVGVQVISLDDAPRGYGEFD--AGVP-KKFVIDPH  392 (398)
T ss_dssp             EESSCC-----------HHHHHHHHHHHHHTTSCCHHHHHTEEEECGGGHHHHHHHHH--HTCS-CEEEECTT
T ss_pred             EecccC-----------hHHHHHHHHHHHHcCCCCCccceeEEEEcHHHHHHHHHHHh--CCCc-eEEEEEeC
Confidence            875421           145578899999999999   34789999999999999998  7776 99999875

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=99.94  E-value=2.4e-26  Score=179.18  Aligned_cols=183  Identities=16%  Similarity=0.168  Sum_probs=140.2

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeCh--hHHHh-HHHhhCCCCCeEEE
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE--EELRN-ISRDASIPKPKLAL   85 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~--~~~~~-~~~~~~~~~~d~vi   85 (202)
                      ++|++|||+|++|++|++++|+|+..|++||+++ +++    +++.++++|++.++|+  .++.+ +++.+++ ++|++|
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~----~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g-~~d~v~  236 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPH----NFDLAKSRGAEEVFDYRAPNLAQTIRTYTKN-NLRYAL  236 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGG----GHHHHHHTTCSEEEETTSTTHHHHHHHHTTT-CCCEEE
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHH----HHHHHHHcCCcEEEECCCchHHHHHHHHccC-CccEEE
Confidence            8999999999988999999999999999999887 444    5889999999999975  45667 8888875 499999


Q ss_pred             ecCCCchH-HHHHHhc-ccCcEEEEEeccCCC-----CcCCC---cccccccCeeEEEEechhHhhhcccHHHHHHHHHH
Q psy2961          86 NCVGGNSA-TNLLRTL-VSKGVMVTYGGMSRE-----PVQIP---TSAFIFKDITLRGHWMTRWQKENKESAERKSMMNE  155 (202)
Q Consensus        86 d~~g~~~~-~~~~~~l-~~~G~~v~~g~~~~~-----~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  155 (202)
                      ||+|++.. ..++++| +++|+++.+|.....     ....+   ...++.+++++.|++.......  ..+...+.+++
T Consensus       237 d~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~--~~~~~~~~~~~  314 (371)
T 3gqv_A          237 DCITNVESTTFCFAAIGRAGGHYVSLNPFPEHAATRKMVTTDWTLGPTIFGEGSTWPAPYGRPGSEE--ERQFGEDLWRI  314 (371)
T ss_dssp             ESSCSHHHHHHHHHHSCTTCEEEEESSCCCC---CCSCEEEEECCGGGGGTSCBSCSTTTCBCCCHH--HHHHHHHHHHH
T ss_pred             ECCCchHHHHHHHHHhhcCCCEEEEEecCccccccccccceeeeeeeeeccccccccccccccccHH--HHHHHHHHHHH
Confidence            99999654 4588999 599999999854431     11111   2345677888877643211111  11334566779


Q ss_pred             HHHHHHcCCCCCCcc--eeechhhHHHHHHHHhhhcCCCCc-eEEEeec
Q psy2961         156 LTEMMRTGKLAAPAH--KFVTLKNFQEALMNTMSIQGKSGV-KYYIDFR  201 (202)
Q Consensus       156 ~~~~~~~g~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~~g-kvv~~~~  201 (202)
                      +.+++++|++++.+.  +.|+++++++||+.+.  +++..| |+|++++
T Consensus       315 ~~~l~~~g~l~~~~~~~~~~~l~~~~~A~~~l~--~g~~~Gkkvvv~~~  361 (371)
T 3gqv_A          315 AGQLVEDGRLVHHPLRVVQGGFDHIKQGMELVR--KGELSGEKLVVRLE  361 (371)
T ss_dssp             HHHHHHTTSSCCCCEEEEEECHHHHHHHHHHHH--TTCCSSCEEEEEEC
T ss_pred             HHHHHHCCeeeCCcCeecCCcHHHHHHHHHHHH--cCCCceEEEEEEeC
Confidence            999999999998744  4599999999999999  777776 7777764

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=99.94  E-value=5.4e-27  Score=184.78  Aligned_cols=173  Identities=17%  Similarity=0.216  Sum_probs=142.4

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcccHHHHHHHHHhcCCceEeCh--hHHHh-HHHhhCCCCC
Q psy2961           6 NSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTE--EELRN-ISRDASIPKP   81 (202)
Q Consensus         6 ~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~--~~~~~-~~~~~~~~~~   81 (202)
                      +++++|++|||+|+ |++|++++|+|+.+|+ +|+++..+++    +++.++++|++.++++  .++.+ +++.+++.++
T Consensus       209 ~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~----~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~  283 (404)
T 3ip1_A          209 GGIRPGDNVVILGG-GPIGLAAVAILKHAGASKVILSEPSEV----RRNLAKELGADHVIDPTKENFVEAVLDYTNGLGA  283 (404)
T ss_dssp             CCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCHH----HHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCC
T ss_pred             cCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHH----HHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCC
Confidence            47999999999998 5999999999999999 7777766664    7899999999999986  45777 8888888899


Q ss_pred             eEEEecCCCc--hHHHHHHhc----ccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHH
Q psy2961          82 KLALNCVGGN--SATNLLRTL----VSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNE  155 (202)
Q Consensus        82 d~vid~~g~~--~~~~~~~~l----~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  155 (202)
                      |+||||+|++  .+..++++|    +++|+++.+|.... ...++...++.+++++.|+.....          .+.+++
T Consensus       284 D~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~~~~-~~~~~~~~~~~~~~~i~g~~~~~~----------~~~~~~  352 (404)
T 3ip1_A          284 KLFLEATGVPQLVWPQIEEVIWRARGINATVAIVARADA-KIPLTGEVFQVRRAQIVGSQGHSG----------HGTFPR  352 (404)
T ss_dssp             SEEEECSSCHHHHHHHHHHHHHHCSCCCCEEEECSCCCS-CEEECHHHHHHTTCEEEECCCCCS----------TTHHHH
T ss_pred             CEEEECCCCcHHHHHHHHHHHHhccCCCcEEEEeCCCCC-CCcccHHHHhccceEEEEecCCCc----------hHHHHH
Confidence            9999999998  344466666    99999999996544 346677778889999999874321          234789


Q ss_pred             HHHHHHcCCCCC--CcceeechhhHHHHHHHHhhhcCCCCceEEEeec
Q psy2961         156 LTEMMRTGKLAA--PAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  201 (202)
Q Consensus       156 ~~~~~~~g~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~~  201 (202)
                      +++++++| +++  .++++|+++++++||+.+.      .||+|++++
T Consensus       353 ~~~ll~~g-l~~~~~i~~~~~l~~~~~A~~~~~------~GKvvl~~~  393 (404)
T 3ip1_A          353 VISLMASG-MDMTKIISKTVSMEEIPEYIKRLQ------TDKSLVKVT  393 (404)
T ss_dssp             HHHHHHTT-CCGGGGCCEEECGGGHHHHHHHTT------TCTTCSCEE
T ss_pred             HHHHHHcC-CChhheEEEEeeHHHHHHHHHHHh------CCcEEEecC
Confidence            99999999 765  4789999999999999876      578888774

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=99.94  E-value=2.3e-26  Score=175.73  Aligned_cols=177  Identities=14%  Similarity=0.168  Sum_probs=131.6

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhCCCCCe
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPK   82 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~~~~~d   82 (202)
                      +.+++++|++|||+|+ |++|++++|+|+..|++|++++ +++    +++.++++|++++++  | .+ +     +.++|
T Consensus       136 ~~~~~~~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~-~~~----~~~~~~~lGa~~v~~--d-~~~v-----~~g~D  201 (315)
T 3goh_A          136 EKIPLTKQREVLIVGF-GAVNNLLTQMLNNAGYVVDLVS-ASL----SQALAAKRGVRHLYR--E-PSQV-----TQKYF  201 (315)
T ss_dssp             TTSCCCSCCEEEEECC-SHHHHHHHHHHHHHTCEEEEEC-SSC----CHHHHHHHTEEEEES--S-GGGC-----CSCEE
T ss_pred             hhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEE-Chh----hHHHHHHcCCCEEEc--C-HHHh-----CCCcc
Confidence            6788999999999999 7999999999999999999998 665    588999999999985  3 33 4     57899


Q ss_pred             EEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhh-hcc-cHHHHHHHHHHHHHHH
Q psy2961          83 LALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQK-ENK-ESAERKSMMNELTEMM  160 (202)
Q Consensus        83 ~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~-~~~~~~~~~~~~~~~~  160 (202)
                      ++|||+|++.+..++++++++|+++.+|.....    .....+.+.+.+....+..+.. ..+ ......+.++++++++
T Consensus       202 vv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  277 (315)
T 3goh_A          202 AIFDAVNSQNAAALVPSLKANGHIICIQDRIPA----PIDPAFTRTISYHEIALGALHDFGDRQDWQILMQQGEALLTLI  277 (315)
T ss_dssp             EEECC-------TTGGGEEEEEEEEEECCC--------------CCSEEEEECGGGHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCchhHHHHHHHhcCCCEEEEEeCCCCc----cccchhhhcceeeEEEeecccccCChhHHHHHHHHHHHHHHHH
Confidence            999999998887789999999999999744321    1112334566666666544332 111 1124567899999999


Q ss_pred             HcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEeecC
Q psy2961         161 RTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFRQ  202 (202)
Q Consensus       161 ~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~~~  202 (202)
                      ++|++++.++++||++++++||+.+.    ...||+|+++++
T Consensus       278 ~~g~l~~~i~~~~~l~~~~~A~~~~~----~~~gKvvi~~~~  315 (315)
T 3goh_A          278 AQGKMEIAAPDIFRFEQMIEALDHSE----QTKLKTVLTLNE  315 (315)
T ss_dssp             HTTSSCCCCCEEEEGGGHHHHHHHHH----HHCCCEEEESCC
T ss_pred             HCCCcccccceEecHHHHHHHHHHHH----hcCCcEEEEecC
Confidence            99999999999999999999999875    346799999864

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=99.94  E-value=5.3e-27  Score=184.54  Aligned_cols=178  Identities=18%  Similarity=0.190  Sum_probs=143.2

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcccHHHHHHHHHhcCCceEeChh--HH-Hh-HHHhhCC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTEE--EL-RN-ISRDASI   78 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~--~~-~~-~~~~~~~   78 (202)
                      +.+++++|++|||+|+ |++|++++|+|+.+|+ +|++++++++    +++.++++|++ ++++.  ++ .+ +++.+++
T Consensus       179 ~~~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~----~~~~a~~lGa~-~i~~~~~~~~~~~~~~~~~g  252 (398)
T 2dph_A          179 VSAGVKPGSHVYIAGA-GPVGRCAAAGARLLGAACVIVGDQNPE----RLKLLSDAGFE-TIDLRNSAPLRDQIDQILGK  252 (398)
T ss_dssp             HHTTCCTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEESCHH----HHHHHHTTTCE-EEETTSSSCHHHHHHHHHSS
T ss_pred             HHcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHH----HHHHHHHcCCc-EEcCCCcchHHHHHHHHhCC
Confidence            4678999999999997 5999999999999999 7888887765    68899999996 67653  43 66 8888877


Q ss_pred             CCCeEEEecCCCch---------------HHHHHHhcccCcEEEEEeccCC------------CCcCCCcccccccCeeE
Q psy2961          79 PKPKLALNCVGGNS---------------ATNLLRTLVSKGVMVTYGGMSR------------EPVQIPTSAFIFKDITL  131 (202)
Q Consensus        79 ~~~d~vid~~g~~~---------------~~~~~~~l~~~G~~v~~g~~~~------------~~~~~~~~~~~~~~~~~  131 (202)
                      .++|+||||+|++.               +..++++|+++|+++.+|....            ....++...++.+++++
T Consensus       253 ~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i  332 (398)
T 2dph_A          253 PEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGIYVGSDPDPVNKDAGSGRLHLDFGKMWTKSIRI  332 (398)
T ss_dssp             SCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSCCCSCCSSCSSHHHHTTEEEEEHHHHHHTTCEE
T ss_pred             CCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEeccccccccccccccccCCcccccHHHHhhcCCEE
Confidence            78999999999763               4568999999999999986521            11234444567888888


Q ss_pred             EEEechhHhhhcccHHHHHHHHHHHHHHHHcCCCC--C--CcceeechhhHHHHHHHHhhhcCCCCceEEEeec
Q psy2961         132 RGHWMTRWQKENKESAERKSMMNELTEMMRTGKLA--A--PAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  201 (202)
Q Consensus       132 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~--~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~~  201 (202)
                      .++....           .+.++++++++.+|+++  +  .++++|+++++++||+.+.  +++. +|+|++++
T Consensus       333 ~g~~~~~-----------~~~~~~~~~l~~~g~l~~~~~~~i~~~~~l~~~~~A~~~~~--~~~~-gKvvv~~~  392 (398)
T 2dph_A          333 MTGMAPV-----------TNYNRHLTEAILWDQMPYLSKVMNIEVITLDQAPDGYAKFD--KGSP-AKFVIDPH  392 (398)
T ss_dssp             ECSSCCG-----------GGTHHHHHHHHHTTCCHHHHHHHCEEEECSTTHHHHHHHHH--TTCS-CEEEECTT
T ss_pred             EEeccCc-----------HHHHHHHHHHHHcCCCCccchhhEEEEEcHHHHHHHHHHHh--cCCc-eEEEEecC
Confidence            8764321           33488999999999999  7  4789999999999999998  7776 99999875

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=99.94  E-value=2e-26  Score=180.10  Aligned_cols=183  Identities=19%  Similarity=0.264  Sum_probs=147.8

Q ss_pred             CCCCEEEEeC-CCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeCh--hHHHh-HHHhhCCCCCeEE
Q psy2961           9 SPGDVVIQNG-ANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE--EELRN-ISRDASIPKPKLA   84 (202)
Q Consensus         9 ~~g~~VlI~g-~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~--~~~~~-~~~~~~~~~~d~v   84 (202)
                      ++|++|||+| ++|++|++++|+|+..|++|++++++++    +++.++++|+++++++  .++.+ +++.+++.++|++
T Consensus       169 ~~g~~vlV~gag~G~vG~~a~q~a~~~Ga~Vi~~~~~~~----~~~~~~~lGa~~~~~~~~~~~~~~v~~~t~~~g~d~v  244 (379)
T 3iup_A          169 LEGHSALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQE----QADLLKAQGAVHVCNAASPTFMQDLTEALVSTGATIA  244 (379)
T ss_dssp             HTTCSCEEESSTTSHHHHHHHHHHHHHTCCEEEEESSHH----HHHHHHHTTCSCEEETTSTTHHHHHHHHHHHHCCCEE
T ss_pred             cCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHhCCCcEEEeCCChHHHHHHHHHhcCCCceEE
Confidence            7899999996 7779999999999999999999987765    6899999999999975  45667 8888877789999


Q ss_pred             EecCCCchHH-HHHHhcc-----cC-----------cEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHH
Q psy2961          85 LNCVGGNSAT-NLLRTLV-----SK-----------GVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESA  147 (202)
Q Consensus        85 id~~g~~~~~-~~~~~l~-----~~-----------G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  147 (202)
                      |||+|++... .++++++     ++           |+++.+|.....  .++...++.+++++.|++...|..... ++
T Consensus       245 ~d~~g~~~~~~~~~~~l~~~~~r~~G~~~~~G~~~~g~iv~~G~~~~~--~~~~~~~~~~~~~i~g~~~~~~~~~~~-~~  321 (379)
T 3iup_A          245 FDATGGGKLGGQILTCMEAALNKSAREYSRYGSTTHKQVYLYGGLDTS--PTEFNRNFGMAWGMGGWLLFPFLQKIG-RE  321 (379)
T ss_dssp             EESCEEESHHHHHHHHHHHHHHTTCCSCCTTCCCSCEEEEECCCSEEE--EEEECCCSCSCEEEEECCHHHHHHHHC-HH
T ss_pred             EECCCchhhHHHHHHhcchhhhccccceeecccccCceEEEecCCCCC--ccccccccccceEEEEEEeeeecccCC-HH
Confidence            9999987654 4667764     44           666666643322  233445677899999998887744322 25


Q ss_pred             HHHHHHHHHHHHHHcCCCCCCcceeechhhH--HHHHHHHhhhcCCCCceEEEeec
Q psy2961         148 ERKSMMNELTEMMRTGKLAAPAHKFVTLKNF--QEALMNTMSIQGKSGVKYYIDFR  201 (202)
Q Consensus       148 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~a~~~~~~~~~~~~gkvv~~~~  201 (202)
                      ...+.++++.+++.+ .+++.++++|+++++  ++||+.+.  +++..||+||+++
T Consensus       322 ~~~~~~~~~~~~~~~-~l~~~i~~~~~l~~~~~~~A~~~l~--~~~~~gKvVv~~~  374 (379)
T 3iup_A          322 RANALKQRVVAELKT-TFASHYSKEISLAEVLDLDMIAVYN--KRATGEKYLINPN  374 (379)
T ss_dssp             HHHHHHHHHHHTTTT-TTCCCCSEEEEHHHHTCHHHHHHHT--TCCTTCCEEEETT
T ss_pred             HHHHHHHHHHHHHhc-cCCCcceEEecHHHhhhHHHHHHHh--cCCCCceEEEeCC
Confidence            667788999999888 588989999999999  99999999  8888999999986

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=99.94  E-value=1.8e-25  Score=174.03  Aligned_cols=174  Identities=17%  Similarity=0.261  Sum_probs=142.5

Q ss_pred             cCCC-CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHH-hcCCceEeChhHHHhHHHhhCCCCCeE
Q psy2961           6 NSLS-PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK-SLGADYVFTEEELRNISRDASIPKPKL   83 (202)
Q Consensus         6 ~~~~-~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~-~lg~~~v~~~~~~~~~~~~~~~~~~d~   83 (202)
                      .+++ +|++|||+|+ |++|++++|+|+..|++|++++++++    +++.++ ++|++.++++.+...+.+.+  .++|+
T Consensus       182 ~~~~~~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~----~~~~~~~~lGa~~v~~~~~~~~~~~~~--~~~D~  254 (366)
T 1yqd_A          182 FGLDEPGKHIGIVGL-GGLGHVAVKFAKAFGSKVTVISTSPS----KKEEALKNFGADSFLVSRDQEQMQAAA--GTLDG  254 (366)
T ss_dssp             TTCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGG----GHHHHHHTSCCSEEEETTCHHHHHHTT--TCEEE
T ss_pred             cCcCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHhcCCceEEeccCHHHHHHhh--CCCCE
Confidence            4677 9999999997 59999999999999999999888876    466665 89999998866532255554  47999


Q ss_pred             EEecCCCc-hHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHHHc
Q psy2961          84 ALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRT  162 (202)
Q Consensus        84 vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (202)
                      |||++|.+ .+...+++|+++|+++.+|.... ...++...++.+++++.|+....           .+.+.++++++.+
T Consensus       255 vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~i~g~~~~~-----------~~~~~~~~~l~~~  322 (366)
T 1yqd_A          255 IIDTVSAVHPLLPLFGLLKSHGKLILVGAPEK-PLELPAFSLIAGRKIVAGSGIGG-----------MKETQEMIDFAAK  322 (366)
T ss_dssp             EEECCSSCCCSHHHHHHEEEEEEEEECCCCSS-CEEECHHHHHTTTCEEEECCSCC-----------HHHHHHHHHHHHH
T ss_pred             EEECCCcHHHHHHHHHHHhcCCEEEEEccCCC-CCCcCHHHHHhCCcEEEEecCCC-----------HHHHHHHHHHHHc
Confidence            99999987 45678999999999999986543 33455566778999999976532           3458889999999


Q ss_pred             CCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEeec
Q psy2961         163 GKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  201 (202)
Q Consensus       163 g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~~  201 (202)
                      |++++.+ ++||++++++||+.+.  +++..||+|++++
T Consensus       323 g~l~~~~-~~~~l~~~~~A~~~~~--~~~~~gKvvl~~~  358 (366)
T 1yqd_A          323 HNITADI-EVISTDYLNTAMERLA--KNDVRYRFVIDVG  358 (366)
T ss_dssp             TTCCCCE-EEECGGGHHHHHHHHH--TTCCSSEEEECHH
T ss_pred             CCCCCce-EEEcHHHHHHHHHHHH--cCCcceEEEEEcc
Confidence            9999876 7999999999999999  8888899999864

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=99.93  E-value=8.9e-26  Score=175.75  Aligned_cols=175  Identities=15%  Similarity=0.182  Sum_probs=141.2

Q ss_pred             ccCCC--C-------CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCc---ccHHHHHHHHHhcCCceEeChh-HHHh
Q psy2961           5 YNSLS--P-------GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR---DDIDKLKSYLKSLGADYVFTEE-ELRN   71 (202)
Q Consensus         5 ~~~~~--~-------g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~---~~~~~~~~~~~~lg~~~v~~~~-~~~~   71 (202)
                      .++++  +       |++|||+|+ |++|++++|+|+..|++|+++++++   +    +++.++++|++.+ + . ++.+
T Consensus       166 ~~~~~~~~~~~~~~~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~----~~~~~~~~ga~~v-~-~~~~~~  238 (366)
T 2cdc_A          166 QKRVPVWTCDDGTLNCRKVLVVGT-GPIGVLFTLLFRTYGLEVWMANRREPTEV----EQTVIEETKTNYY-N-SSNGYD  238 (366)
T ss_dssp             GGGSSCCSCTTSSSTTCEEEEESC-HHHHHHHHHHHHHHTCEEEEEESSCCCHH----HHHHHHHHTCEEE-E-CTTCSH
T ss_pred             ccCccccccccccCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCccchH----HHHHHHHhCCcee-c-hHHHHH
Confidence            56788  8       999999999 7999999999999999999988876   5    5788899999988 6 4 3334


Q ss_pred             -HHHhhCCCCCeEEEecCCCch-H-HHHHHhcccCcEEEEEeccCCCCcCCCccc---ccccCeeEEEEechhHhhhccc
Q psy2961          72 -ISRDASIPKPKLALNCVGGNS-A-TNLLRTLVSKGVMVTYGGMSREPVQIPTSA---FIFKDITLRGHWMTRWQKENKE  145 (202)
Q Consensus        72 -~~~~~~~~~~d~vid~~g~~~-~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~  145 (202)
                       +.+ +. .++|++||++|++. + ..++++|+++|+++.+|........++...   ++.+++++.|+....       
T Consensus       239 ~~~~-~~-~~~d~vid~~g~~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~-------  309 (366)
T 2cdc_A          239 KLKD-SV-GKFDVIIDATGADVNILGNVIPLLGRNGVLGLFGFSTSGSVPLDYKTLQEIVHTNKTIIGLVNGQ-------  309 (366)
T ss_dssp             HHHH-HH-CCEEEEEECCCCCTHHHHHHGGGEEEEEEEEECSCCCSCEEEEEHHHHHHHHHTTCEEEECCCCC-------
T ss_pred             HHHH-hC-CCCCEEEECCCChHHHHHHHHHHHhcCCEEEEEecCCCCccccChhhhHHHHhcCcEEEEecCCC-------
Confidence             555 54 68999999999874 4 568999999999999986544323455555   778999999976431       


Q ss_pred             HHHHHHHHHHHHHHHHcCC------CCCCcceeechhhHHHHHHHH-hhhcCCCCceEEEeec
Q psy2961         146 SAERKSMMNELTEMMRTGK------LAAPAHKFVTLKNFQEALMNT-MSIQGKSGVKYYIDFR  201 (202)
Q Consensus       146 ~~~~~~~~~~~~~~~~~g~------~~~~~~~~~~~~~~~~a~~~~-~~~~~~~~gkvv~~~~  201 (202)
                          .+.++++++++++|+      +++.++++|+++++++||+.+ .  .+...+|+|++++
T Consensus       310 ----~~~~~~~~~l~~~g~i~~~~~~~~~i~~~~~l~~~~~A~~~l~~--~~~~~gKvvi~~~  366 (366)
T 2cdc_A          310 ----KPHFQQAVVHLASWKTLYPKAAKMLITKTVSINDEKELLKVLRE--KEHGEIKIRILWE  366 (366)
T ss_dssp             ----HHHHHHHHHHHHHHHHHSHHHHTTSEEEEEETTCHHHHHHHHHC--CCTTCCEEEEECC
T ss_pred             ----HHHHHHHHHHHHcCCCCcccchhhcEEEEEcHHHHHHHHHHHhh--hcCCceEEEEecC
Confidence                456899999999999      667788999999999999994 4  3455889999874

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=99.92  E-value=1.4e-24  Score=199.47  Aligned_cols=192  Identities=19%  Similarity=0.268  Sum_probs=155.9

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHh----cCCceEeCh--hHHHh-HHH
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS----LGADYVFTE--EELRN-ISR   74 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~----lg~~~v~~~--~~~~~-~~~   74 (202)
                      |.+.+++++|++|||+|++|++|++++|+|+..|++|++++++++    +++.+++    +|+++++++  .++.+ +.+
T Consensus      1659 l~~~a~l~~Ge~VLI~gaaGgVG~aAiqlAk~~Ga~Viat~~s~~----k~~~l~~~~~~lga~~v~~~~~~~~~~~i~~ 1734 (2512)
T 2vz8_A         1659 LVVRGRMQPGESVLIHSGSGGVGQAAIAIALSRGCRVFTTVGSAE----KRAYLQARFPQLDETCFANSRDTSFEQHVLR 1734 (2512)
T ss_dssp             HTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHCTTCCSTTEEESSSSHHHHHHHH
T ss_pred             HHHHhcCCCCCEEEEEeCChHHHHHHHHHHHHcCCEEEEEeCChh----hhHHHHhhcCCCCceEEecCCCHHHHHHHHH
Confidence            456788999999999999889999999999999999999998775    5677765    788888875  45667 888


Q ss_pred             hhCCCCCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHH
Q psy2961          75 DASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMN  154 (202)
Q Consensus        75 ~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  154 (202)
                      .+++.++|+||||++++.+...+++++++|+++.+|.............++.+++++.++....+....+  ....+.++
T Consensus      1735 ~t~g~GvDvVld~~g~~~l~~~l~~L~~~Gr~V~iG~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~--~~~~~~l~ 1812 (2512)
T 2vz8_A         1735 HTAGKGVDLVLNSLAEEKLQASVRCLAQHGRFLEIGKFDLSNNHALGMAVFLKNVTFHGILLDSLFEEGG--ATWQEVSE 1812 (2512)
T ss_dssp             TTTSCCEEEEEECCCHHHHHHHHTTEEEEEEEEECCCHHHHTTCEEEGGGGGGCCEEEECCGGGTTSSCC--HHHHHHHH
T ss_pred             hcCCCCceEEEECCCchHHHHHHHhcCCCcEEEEeecccccccCcccccccccCCcEEEeeHHHHhhhCH--HHHHHHHH
Confidence            8888899999999998777779999999999999984332111112234667899999987665433222  45667777


Q ss_pred             HHHHHHHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEeec
Q psy2961         155 ELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  201 (202)
Q Consensus       155 ~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~~  201 (202)
                      .+.+++.+|.+++.++++||++++++||+.+.  +++..||+|+.++
T Consensus      1813 ~l~~~~~~g~l~p~i~~~f~l~ei~eA~~~l~--~g~~~GKvVi~~~ 1857 (2512)
T 2vz8_A         1813 LLKAGIQEGVVQPLKCTVFPRTKVEAAFRYMA--QGKHIGKVVIQVR 1857 (2512)
T ss_dssp             HHHHHHTTTCSCCCCEEEEESSTHHHHHHHHH--TTCCSSEEEEECS
T ss_pred             HHHHHHHcCCcCCCcceEecHHHHHHHHHhhh--ccCccceEEEECC
Confidence            77788889999998999999999999999999  8888899999874

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=99.92  E-value=1.1e-25  Score=174.76  Aligned_cols=178  Identities=16%  Similarity=0.184  Sum_probs=140.7

Q ss_pred             cccCCCCC------CEEEEeCCCcHHHHHH-HHHH-HHCCCc-EEEEecCcccHHHHHHHHHhcCCceEeChh--HHHhH
Q psy2961           4 DYNSLSPG------DVVIQNGANSACGQNV-IQIA-RHWGLK-TINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRNI   72 (202)
Q Consensus         4 ~~~~~~~g------~~VlI~g~~~~vG~~~-i~la-~~~g~~-vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~--~~~~~   72 (202)
                      +.+++++|      ++|||+|+ |++|+++ +|+| +.+|++ |++++++++. +.+++.++++|++++ ++.  ++.++
T Consensus       160 ~~~~~~~g~~~~~~~~VlV~Ga-G~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~-~~~~~~~~~lGa~~v-~~~~~~~~~i  236 (357)
T 2b5w_A          160 EHAYASRSAFDWDPSSAFVLGN-GSLGLLTLAMLKVDDKGYENLYCLGRRDRP-DPTIDIIEELDATYV-DSRQTPVEDV  236 (357)
T ss_dssp             HHHHHTTTTSCCCCCEEEEECC-SHHHHHHHHHHHHCTTCCCEEEEEECCCSS-CHHHHHHHHTTCEEE-ETTTSCGGGH
T ss_pred             HhcCCCCCcccCCCCEEEEECC-CHHHHHHHHHHHHHHcCCcEEEEEeCCccc-HHHHHHHHHcCCccc-CCCccCHHHH
Confidence            34667889      99999999 6999999 9999 999998 8998877650 013688899999998 754  23224


Q ss_pred             HHhhCCCCCeEEEecCCCc-hHHHHHHhcccCcEEEEEeccCCCCcCCCcccc----cccCeeEEEEechhHhhhcccHH
Q psy2961          73 SRDASIPKPKLALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAF----IFKDITLRGHWMTRWQKENKESA  147 (202)
Q Consensus        73 ~~~~~~~~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~  147 (202)
                      .+. .+ ++|+||||+|++ .+..++++++++|+++.+|........++...+    +.+++++.|+....         
T Consensus       237 ~~~-~g-g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~---------  305 (357)
T 2b5w_A          237 PDV-YE-QMDFIYEATGFPKHAIQSVQALAPNGVGALLGVPSDWAFEVDAGAFHREMVLHNKALVGSVNSH---------  305 (357)
T ss_dssp             HHH-SC-CEEEEEECSCCHHHHHHHHHHEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHTTCEEEECCCCC---------
T ss_pred             HHh-CC-CCCEEEECCCChHHHHHHHHHHhcCCEEEEEeCCCCCCceecHHHHhHHHHhCCeEEEEeccCC---------
Confidence            444 44 899999999987 455689999999999999965533445666666    78999999976542         


Q ss_pred             HHHHHHHHHHHHHHcC--C-CCCCcceeechhhHHHHHHHHhhhcCCCCceEEEeecC
Q psy2961         148 ERKSMMNELTEMMRTG--K-LAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFRQ  202 (202)
Q Consensus       148 ~~~~~~~~~~~~~~~g--~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~~~  202 (202)
                        .+.++++++++++|  + +++.++++|+++++++||+.+     ...+|+|++++.
T Consensus       306 --~~~~~~~~~l~~~g~~~~~~~~i~~~~~l~~~~~A~~~~-----~~~gKvvi~~~~  356 (357)
T 2b5w_A          306 --VEHFEAATVTFTKLPKWFLEDLVTGVHPLSEFEAAFDDD-----DTTIKTAIEFST  356 (357)
T ss_dssp             --HHHHHHHHHHHHHSCHHHHHHHEEEEEEGGGGGGGGCCS-----TTCCEEEEECCC
T ss_pred             --HHHHHHHHHHHHhCchhhhhhhcceeecHHHHHHHHHHh-----CCCceEEEEecC
Confidence              45689999999999  8 577788999999999999876     236899998863

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=99.91  E-value=2.7e-24  Score=167.92  Aligned_cols=179  Identities=18%  Similarity=0.278  Sum_probs=133.7

Q ss_pred             cccccC----CCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChh--HHHh-HHH
Q psy2961           2 LKDYNS----LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISR   74 (202)
Q Consensus         2 l~~~~~----~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~--~~~~-~~~   74 (202)
                      |.+.++    +++|++|||+|++|++|++++|+|+..|++|++++ +++    +++.++++|++.++++.  ++.+ +.+
T Consensus       171 l~~~~~~~~~~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~----~~~~~~~lGa~~v~~~~~~~~~~~~~~  245 (375)
T 2vn8_A          171 INKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQD----ASELVRKLGADDVIDYKSGSVEEQLKS  245 (375)
T ss_dssp             HTTTTCCCTTTCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGG----GHHHHHHTTCSEEEETTSSCHHHHHHT
T ss_pred             HHHhcccccccCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChH----HHHHHHHcCCCEEEECCchHHHHHHhh
Confidence            345567    89999999999888999999999999999998887 444    57888999999998753  3444 443


Q ss_pred             hhCCCCCeEEEecCCCchH--HHHHHhcccCcEEEEEeccCCCCcC---CCc------ccccc-------cCeeEEEEec
Q psy2961          75 DASIPKPKLALNCVGGNSA--TNLLRTLVSKGVMVTYGGMSREPVQ---IPT------SAFIF-------KDITLRGHWM  136 (202)
Q Consensus        75 ~~~~~~~d~vid~~g~~~~--~~~~~~l~~~G~~v~~g~~~~~~~~---~~~------~~~~~-------~~~~~~g~~~  136 (202)
                         ..++|++|||+|++..  ...+++++++|+++.+|........   ++.      ..++.       ++..+.+...
T Consensus       246 ---~~g~D~vid~~g~~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  322 (375)
T 2vn8_A          246 ---LKPFDFILDNVGGSTETWAPDFLKKWSGATYVTLVTPFLLNMDRLGIADGMLQTGVTVGSKALKHFWKGVHYRWAFF  322 (375)
T ss_dssp             ---SCCBSEEEESSCTTHHHHGGGGBCSSSCCEEEESCCSHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCEEEECCC
T ss_pred             ---cCCCCEEEECCCChhhhhHHHHHhhcCCcEEEEeCCCcccccccccccchhheeehhhccccccccccCcceEEEEe
Confidence               2589999999999843  5578899999999999854321100   000      01222       2223322211


Q ss_pred             hhHhhhcccHHHHHHHHHHHHHHHHcCCCCCCcceeechhhHHHHHHHHhhhcCCCCceEEEee
Q psy2961         137 TRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  200 (202)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~gkvv~~~  200 (202)
                            .+    ..+.++++++++++|++++.++++||++++++||+.+.  +++..||+|+++
T Consensus       323 ------~~----~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~--~~~~~gKvvi~~  374 (375)
T 2vn8_A          323 ------MA----SGPCLDDIAELVDAGKIRPVIEQTFPFSKVPEAFLKVE--RGHARGKTVINV  374 (375)
T ss_dssp             ------CC----CHHHHHHHHHHHHTTSCCCCEEEEEEGGGHHHHHHHHH--HCCCSSEEEEEC
T ss_pred             ------CC----CHHHHHHHHHHHHCCCcccCcCeEECHHHHHHHHHHHH--cCCCCCeEEEEe
Confidence                  11    14568999999999999998899999999999999998  777789999986

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=99.88  E-value=1.5e-21  Score=139.54  Aligned_cols=165  Identities=18%  Similarity=0.247  Sum_probs=123.4

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeCh--hHHHh-HHHhhCC
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE--EELRN-ISRDASI   78 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~--~~~~~-~~~~~~~   78 (202)
                      |.+.+++++|++|+|+|++|++|++++|+++..|++|+++.++++    +.+.++++|++.+++.  .+..+ +.+.+.+
T Consensus        30 l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~----~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~  105 (198)
T 1pqw_A           30 LCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDA----KREMLSRLGVEYVGDSRSVDFADEILELTDG  105 (198)
T ss_dssp             HHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHH----HHHHHHTTCCSEEEETTCSTHHHHHHHHTTT
T ss_pred             HHHHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHcCCCEEeeCCcHHHHHHHHHHhCC
Confidence            345678999999999999889999999999999999988887765    5677888999887764  34555 6666665


Q ss_pred             CCCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCC-CcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHH
Q psy2961          79 PKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSRE-PVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELT  157 (202)
Q Consensus        79 ~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  157 (202)
                      .++|++||++|.+.....+++|+++|+++.+|..... ...++. ..+.+++++.++.. .+.... .+....+.+++++
T Consensus       106 ~~~D~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~  182 (198)
T 1pqw_A          106 YGVDVVLNSLAGEAIQRGVQILAPGGRFIELGKKDVYADASLGL-AALAKSASFSVVDL-DLNLKL-QPARYRQLLQHIL  182 (198)
T ss_dssp             CCEEEEEECCCTHHHHHHHHTEEEEEEEEECSCGGGTTTCEEEG-GGGTTTCEEEECCH-HHHHHH-CHHHHHHHHHHHH
T ss_pred             CCCeEEEECCchHHHHHHHHHhccCCEEEEEcCCCCcCcCcCCh-hHhcCCcEEEEEeh-HHhhcc-CHHHHHHHHHHHH
Confidence            6899999999977777799999999999999865421 112222 23468888887755 332210 1133467899999


Q ss_pred             HHHHcCCCCCCcceee
Q psy2961         158 EMMRTGKLAAPAHKFV  173 (202)
Q Consensus       158 ~~~~~g~~~~~~~~~~  173 (202)
                      +++++|+++|.+.++|
T Consensus       183 ~l~~~g~l~~~~~~~~  198 (198)
T 1pqw_A          183 QHVADGKLEVLPVTAF  198 (198)
T ss_dssp             HHHHTTSSCCCCCC--
T ss_pred             HHHHcCCccCCCCCcC
Confidence            9999999998765543

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=99.33  E-value=2.1e-11  Score=94.46  Aligned_cols=146  Identities=15%  Similarity=0.156  Sum_probs=98.5

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCce--Ee--ChhHHHhHHHhhCCCCCeE
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY--VF--TEEELRNISRDASIPKPKL   83 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~--v~--~~~~~~~~~~~~~~~~~d~   83 (202)
                      +++ ++|+|+|+| ++|+++++.++.+|++|+++.++++    +.+.++++++..  ++  +..++.+   ..  .++|+
T Consensus       165 l~~-~~VlViGaG-gvG~~aa~~a~~~Ga~V~v~dr~~~----r~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~Dv  233 (361)
T 1pjc_A          165 VKP-GKVVILGGG-VVGTEAAKMAVGLGAQVQIFDINVE----RLSYLETLFGSRVELLYSNSAEIET---AV--AEADL  233 (361)
T ss_dssp             BCC-CEEEEECCS-HHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHGGGSEEEECCHHHHHH---HH--HTCSE
T ss_pred             CCC-CEEEEECCC-HHHHHHHHHHHhCCCEEEEEeCCHH----HHHHHHHhhCceeEeeeCCHHHHHH---HH--cCCCE
Confidence            444 899999995 9999999999999998777776665    567777666543  22  2334433   11  36899


Q ss_pred             EEecCCCch-------HHHHHHhcccCcEEEEEeccCCC------CcCCCcccccccCeeEEEEechhHhhhc-ccHHHH
Q psy2961          84 ALNCVGGNS-------ATNLLRTLVSKGVMVTYGGMSRE------PVQIPTSAFIFKDITLRGHWMTRWQKEN-KESAER  149 (202)
Q Consensus        84 vid~~g~~~-------~~~~~~~l~~~G~~v~~g~~~~~------~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~  149 (202)
                      ||+|++.+.       ....++.|+++|+++.++...+.      +..++...+..+++++.+.......... ......
T Consensus       234 VI~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~~~~gg~~e~~~~~~~~~~~~~~~~v~~~~~~~lp~~~~~~~s~~~~  313 (361)
T 1pjc_A          234 LIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVAVDQGGCVETLHPTSHTQPTYEVFGVVHYGVPNMPGAVPWTATQALN  313 (361)
T ss_dssp             EEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTCTTCCSBTTCCCCCSSSCEEEETTEEEECCSCGGGGCHHHHHHHHH
T ss_pred             EEECCCcCCCCCCeecCHHHHhhCCCCCEEEEEecCCCCCCccccCCCCCCCEEEECCEEEEEeCCcchhhHHHHHHHHH
Confidence            999998654       34578899999999999865543      2345555666788888775422111111 111223


Q ss_pred             HHHHHHHHHHHHcCC
Q psy2961         150 KSMMNELTEMMRTGK  164 (202)
Q Consensus       150 ~~~~~~~~~~~~~g~  164 (202)
                      ...+..+.+++.+|.
T Consensus       314 ~~~~~~l~~l~~~G~  328 (361)
T 1pjc_A          314 NSTLPYVVKLANQGL  328 (361)
T ss_dssp             HHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHhCCc
Confidence            566788899998884

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=99.20  E-value=1.9e-10  Score=89.51  Aligned_cols=144  Identities=17%  Similarity=0.135  Sum_probs=93.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHh-cCCceEe---ChhHHHhHHHhhCCCCCeEEE
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS-LGADYVF---TEEELRNISRDASIPKPKLAL   85 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~-lg~~~v~---~~~~~~~~~~~~~~~~~d~vi   85 (202)
                      +|++|+|+|+| ++|+.+++.++.+|++|+++.++++    +.+.+++ +|+....   +..++.+   ..  .++|+|+
T Consensus       167 ~g~~V~ViG~G-~iG~~~a~~a~~~Ga~V~~~d~~~~----~l~~~~~~~g~~~~~~~~~~~~l~~---~l--~~aDvVi  236 (377)
T 2vhw_A          167 EPADVVVIGAG-TAGYNAARIANGMGATVTVLDINID----KLRQLDAEFCGRIHTRYSSAYELEG---AV--KRADLVI  236 (377)
T ss_dssp             CCCEEEEECCS-HHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHTTTSSEEEECCHHHHHH---HH--HHCSEEE
T ss_pred             CCCEEEEECCC-HHHHHHHHHHHhCCCEEEEEeCCHH----HHHHHHHhcCCeeEeccCCHHHHHH---HH--cCCCEEE
Confidence            58999999995 9999999999999998887776654    5666665 6765322   2334444   11  3579999


Q ss_pred             ecCCCch-------HHHHHHhcccCcEEEEEeccCC------CCcCCCcccccccCeeEEEEechhHhhhc-ccHHHHHH
Q psy2961          86 NCVGGNS-------ATNLLRTLVSKGVMVTYGGMSR------EPVQIPTSAFIFKDITLRGHWMTRWQKEN-KESAERKS  151 (202)
Q Consensus        86 d~~g~~~-------~~~~~~~l~~~G~~v~~g~~~~------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~  151 (202)
                      +|++.+.       ....++.|+++|.++.++...+      .+.+++.+.+..+++.+.+...-...... ........
T Consensus       237 ~~~~~p~~~t~~li~~~~l~~mk~g~~iV~va~~~Ggv~e~~ep~~~~~~~~~~~~v~i~~~phl~~~~~~~as~~~~~~  316 (377)
T 2vhw_A          237 GAVLVPGAKAPKLVSNSLVAHMKPGAVLVDIAIDQGGCFEGSRPTTYDHPTFAVHDTLFYCVANMPASVPKTSTYALTNA  316 (377)
T ss_dssp             ECCCCTTSCCCCCBCHHHHTTSCTTCEEEEGGGGTTCSBTTCCCBCSSSCEEEETTEEEECBTTGGGGSHHHHHHHHHHH
T ss_pred             ECCCcCCCCCcceecHHHHhcCCCCcEEEEEecCCCCccccccCCCCCCCEEEECCEEEEecCCcchhhHHHHHHHHHHH
Confidence            9997664       3457889999999999985443      23344444555677776654432221111 11011234


Q ss_pred             HHHHHHHHHHcC
Q psy2961         152 MMNELTEMMRTG  163 (202)
Q Consensus       152 ~~~~~~~~~~~g  163 (202)
                      .+..+.+++.+|
T Consensus       317 ~~~~~~~l~~~g  328 (377)
T 2vhw_A          317 TMPYVLELADHG  328 (377)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCC
Confidence            456677777666

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=99.18  E-value=2.4e-10  Score=88.79  Aligned_cols=145  Identities=15%  Similarity=0.188  Sum_probs=87.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHh-cCCceEe---ChhHHHhHHHhhCCCCCeEEE
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS-LGADYVF---TEEELRNISRDASIPKPKLAL   85 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~-lg~~~v~---~~~~~~~~~~~~~~~~~d~vi   85 (202)
                      ++++|+|+|+| ++|+.+++.++..|++|+++.++++    +.+.+++ +|.....   +..++.+   ..  .++|++|
T Consensus       165 ~~~~V~ViGaG-~iG~~~a~~l~~~Ga~V~~~d~~~~----~~~~~~~~~g~~~~~~~~~~~~l~~---~~--~~~DvVi  234 (369)
T 2eez_A          165 APASVVILGGG-TVGTNAAKIALGMGAQVTILDVNHK----RLQYLDDVFGGRVITLTATEANIKK---SV--QHADLLI  234 (369)
T ss_dssp             CCCEEEEECCS-HHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHTTTSEEEEECCHHHHHH---HH--HHCSEEE
T ss_pred             CCCEEEEECCC-HHHHHHHHHHHhCCCEEEEEECCHH----HHHHHHHhcCceEEEecCCHHHHHH---HH--hCCCEEE
Confidence            45899999995 9999999999999998888777664    4555654 6765322   2334433   22  3689999


Q ss_pred             ecCCCch-------HHHHHHhcccCcEEEEEeccCCC------CcCCCcccccccCeeEEEEechhHhhhc-ccHHHHHH
Q psy2961          86 NCVGGNS-------ATNLLRTLVSKGVMVTYGGMSRE------PVQIPTSAFIFKDITLRGHWMTRWQKEN-KESAERKS  151 (202)
Q Consensus        86 d~~g~~~-------~~~~~~~l~~~G~~v~~g~~~~~------~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~  151 (202)
                      +|++.+.       ....++.|+++|+++.++...+.      +..++.+.+..+++++.++....-.... .......+
T Consensus       235 ~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~~~~gg~~d~~ep~~~~~~~~~~~~v~~~~v~~lp~~~p~~as~~~~~~  314 (369)
T 2eez_A          235 GAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVAVDQGGCVETIRPTTHAEPTYVVDGVVHYGVANMPGAVPRTSTFALTNQ  314 (369)
T ss_dssp             ECCC-------CCSCHHHHTTSCTTCEEEECC-------------------CEETTEEEECCSCSGGGSHHHHHHHHHHH
T ss_pred             ECCCCCccccchhHHHHHHHhhcCCCEEEEEecCCCCCCCcccCCCCCCCEEEECCEEEEeeCCcchhcHHHHHHHHHHH
Confidence            9998653       34578899999999999865432      2233344455677887775422111111 00012245


Q ss_pred             HHHHHHHHHHcCC
Q psy2961         152 MMNELTEMMRTGK  164 (202)
Q Consensus       152 ~~~~~~~~~~~g~  164 (202)
                      .+..+.+++.+|.
T Consensus       315 ~~~~l~~l~~~g~  327 (369)
T 2eez_A          315 TLPYVLKLAEKGL  327 (369)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcCh
Confidence            6778888887764

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=99.17  E-value=2e-10  Score=89.69  Aligned_cols=120  Identities=16%  Similarity=0.281  Sum_probs=84.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceE-eChhH--------------------
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEE--------------------   68 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v-~~~~~--------------------   68 (202)
                      +|++|+|+|+| .+|++++++++.+|++|+++.++++    +.+.++++|++.+ ++..+                    
T Consensus       171 ~g~~V~ViGaG-~iG~~aa~~a~~~Ga~V~~~d~~~~----~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~  245 (384)
T 1l7d_A          171 PPARVLVFGVG-VAGLQAIATAKRLGAVVMATDVRAA----TKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRK  245 (384)
T ss_dssp             CCCEEEEECCS-HHHHHHHHHHHHTTCEEEEECSCST----THHHHHHTTCEECCC-----------------------C
T ss_pred             CCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHcCCeEEeecccccccccccccchhhcCHHHHh
Confidence            78999999987 9999999999999998777666655    4677778998765 22211                    


Q ss_pred             -HHh-HHHhhCCCCCeEEEecC---CCch--H--HHHHHhcccCcEEEEEeccCCCCc--CCCcccccccCeeEEEEec
Q psy2961          69 -LRN-ISRDASIPKPKLALNCV---GGNS--A--TNLLRTLVSKGVMVTYGGMSREPV--QIPTSAFIFKDITLRGHWM  136 (202)
Q Consensus        69 -~~~-~~~~~~~~~~d~vid~~---g~~~--~--~~~~~~l~~~G~~v~~g~~~~~~~--~~~~~~~~~~~~~~~g~~~  136 (202)
                       ..+ +.+..  .++|+||+|+   |.+.  .  ...++.|++++.++.++...+...  ..+...+..+++++.++..
T Consensus       246 ~~~~~l~~~~--~~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vivdva~~~gg~~~~~~~~~~~~~~~v~i~g~~~  322 (384)
T 1l7d_A          246 KQAEAVLKEL--VKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVGHTN  322 (384)
T ss_dssp             CHHHHHHHHH--TTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGGTCSSTTCCTTCEEEETTEEEECCSS
T ss_pred             hhHHHHHHHh--CCCCEEEECCccCCCCCCeeeCHHHHhcCCCCCEEEEEecCCCCCeecccCCcEEEECCEEEEEeCC
Confidence             112 33433  4689999999   5322  2  457889999999999985443322  2244455678888888653

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=98.99  E-value=7.4e-09  Score=81.13  Aligned_cols=120  Identities=13%  Similarity=0.164  Sum_probs=82.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-Ch---------------hHH----
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TE---------------EEL----   69 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~---------------~~~----   69 (202)
                      +|.+|+|+|+| .+|+.++++|+.+|++|+++..+.+    +.+.++++|++.+. +.               .++    
T Consensus       171 ~g~~V~ViGaG-~iG~~aa~~a~~~Ga~V~v~D~~~~----~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  245 (401)
T 1x13_A          171 PPAKVMVIGAG-VAGLAAIGAANSLGAIVRAFDTRPE----VKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAE  245 (401)
T ss_dssp             CCCEEEEECCS-HHHHHHHHHHHHTTCEEEEECSCGG----GHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHH
T ss_pred             CCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEcCCHH----HHHHHHHcCCEEEEecccccccccccchhhccHHHHHHH
Confidence            68999999997 9999999999999998777766665    46777888887652 11               111    


Q ss_pred             Hh-HHHhhCCCCCeEEEecCCCc-----h-H-HHHHHhcccCcEEEEEeccCCCCcCCCc--c-cccccCeeEEEEec
Q psy2961          70 RN-ISRDASIPKPKLALNCVGGN-----S-A-TNLLRTLVSKGVMVTYGGMSREPVQIPT--S-AFIFKDITLRGHWM  136 (202)
Q Consensus        70 ~~-~~~~~~~~~~d~vid~~g~~-----~-~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~--~-~~~~~~~~~~g~~~  136 (202)
                      .. +.+..  .++|+||++++.+     . . ...++.|++++.++.++...+.......  . .+..+++++.|...
T Consensus       246 ~~~l~e~~--~~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~vIVdva~~~Gg~v~~~~~~~p~~~~~gv~i~g~~~  321 (401)
T 1x13_A          246 MELFAAQA--KEVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLAAQNGGNCEYTVPGEIFTTENGVKVIGYTD  321 (401)
T ss_dssp             HHHHHHHH--HHCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTTCCTTSEEECTTSCEEECCSC
T ss_pred             HHHHHHHh--CCCCEEEECCccCCCCCCeeeCHHHHhcCCCCcEEEEEcCCCCCCcCcccCCCceEEECCEEEEeeCC
Confidence            11 33333  3589999995322     2 2 3578999999999999865443333222  2 25578888888653

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=98.86  E-value=5.5e-08  Score=75.07  Aligned_cols=119  Identities=13%  Similarity=0.206  Sum_probs=82.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeC---------hh---------HHHh
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT---------EE---------ELRN   71 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~---------~~---------~~~~   71 (202)
                      ++.+|+|+|+| .+|+.++++++.+|++|++..++++    +++.++++|++.+.-         +.         ....
T Consensus       183 ~~~kV~ViG~G-~iG~~aa~~a~~lGa~V~v~D~~~~----~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~  257 (381)
T 3p2y_A          183 KPASALVLGVG-VAGLQALATAKRLGAKTTGYDVRPE----VAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQ  257 (381)
T ss_dssp             CCCEEEEESCS-HHHHHHHHHHHHHTCEEEEECSSGG----GHHHHHHTTCEECCCC-------------CHHHHHHHHH
T ss_pred             CCCEEEEECch-HHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHH
Confidence            67899999998 9999999999999999888777766    577888888865421         00         1112


Q ss_pred             -HHHhhCCCCCeEEEecCCCc-----h--HHHHHHhcccCcEEEEEeccCCCCcCC--CcccccccCeeEEEEe
Q psy2961          72 -ISRDASIPKPKLALNCVGGN-----S--ATNLLRTLVSKGVMVTYGGMSREPVQI--PTSAFIFKDITLRGHW  135 (202)
Q Consensus        72 -~~~~~~~~~~d~vid~~g~~-----~--~~~~~~~l~~~G~~v~~g~~~~~~~~~--~~~~~~~~~~~~~g~~  135 (202)
                       +.+..  .++|+||.|+.-+     .  ....++.|++++.++.++...+.....  +...+..+++++++..
T Consensus       258 ~l~e~l--~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA~d~GG~~e~t~~~~~~~~~gV~~~~v~  329 (381)
T 3p2y_A          258 ALEDAI--TKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLAGETGGNCELTEPGRTIVHHGVTITSPL  329 (381)
T ss_dssp             HHHHHH--TTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTTCCTTCEEEETTEEEECCS
T ss_pred             HHHHHH--hcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEeCCCCCccccccCCCeEEECCEEEEeeC
Confidence             44443  6789999986322     2  245889999999999998665544321  2222334566666654

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=98.82  E-value=8.9e-08  Score=74.49  Aligned_cols=119  Identities=17%  Similarity=0.208  Sum_probs=82.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeC-------------hh-----H---
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT-------------EE-----E---   68 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~-------------~~-----~---   68 (202)
                      ++.+|+|+|+| .+|+.++++++.+|++|++...+++    +++.++++|++.+..             +.     +   
T Consensus       189 ~~~kV~ViG~G-~iG~~aa~~a~~lGa~V~v~D~~~~----~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~  263 (405)
T 4dio_A          189 PAAKIFVMGAG-VAGLQAIATARRLGAVVSATDVRPA----AKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQV  263 (405)
T ss_dssp             CCCEEEEECCS-HHHHHHHHHHHHTTCEEEEECSSTT----HHHHHHHTTCEECCCCC-----------------CHHHH
T ss_pred             CCCEEEEECCc-HHHHHHHHHHHHCCCEEEEEcCCHH----HHHHHHHcCCceeecccccccccccccchhhhcchhhhh
Confidence            57899999998 9999999999999999887776665    678888888764321             10     0   


Q ss_pred             -HHh-HHHhhCCCCCeEEEecCCCc-----h--HHHHHHhcccCcEEEEEeccCCCCcCC--CcccccccCeeEEEEe
Q psy2961          69 -LRN-ISRDASIPKPKLALNCVGGN-----S--ATNLLRTLVSKGVMVTYGGMSREPVQI--PTSAFIFKDITLRGHW  135 (202)
Q Consensus        69 -~~~-~~~~~~~~~~d~vid~~g~~-----~--~~~~~~~l~~~G~~v~~g~~~~~~~~~--~~~~~~~~~~~~~g~~  135 (202)
                       ... +.+..  .+.|+||.|+.-+     .  ....++.|++++.+|.++...+.....  +...+..+++++++..
T Consensus       264 ~~~~~l~e~l--~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG~~e~t~~~~~~~~~GV~~~gv~  339 (405)
T 4dio_A          264 KQAALVAEHI--AKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLAVERGGNIEGAEAGKVTEVGGVRIVGHL  339 (405)
T ss_dssp             HHHHHHHHHH--HTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETTGGGTCSBTTCCTTEEEEETTEEEEECS
T ss_pred             hhHhHHHHHh--cCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEeCCCCCCccccCCCCeEEECCEEEEEeC
Confidence             012 33333  5789999996422     1  235889999999999998655443322  2223445678887766

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=98.74  E-value=4.5e-08  Score=78.25  Aligned_cols=91  Identities=16%  Similarity=0.202  Sum_probs=72.0

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEec
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNC   87 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~   87 (202)
                      ..+|++|+|.|.| .+|..+++.++.+|++|+++..++.    +.+.++++|++ +.+..+.  +      .++|+|+++
T Consensus       271 ~l~GktV~IiG~G-~IG~~~A~~lka~Ga~Viv~d~~~~----~~~~A~~~Ga~-~~~l~e~--l------~~aDvVi~a  336 (494)
T 3ce6_A          271 LIGGKKVLICGYG-DVGKGCAEAMKGQGARVSVTEIDPI----NALQAMMEGFD-VVTVEEA--I------GDADIVVTA  336 (494)
T ss_dssp             CCTTCEEEEECCS-HHHHHHHHHHHHTTCEEEEECSCHH----HHHHHHHTTCE-ECCHHHH--G------GGCSEEEEC
T ss_pred             CCCcCEEEEEccC-HHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHcCCE-EecHHHH--H------hCCCEEEEC
Confidence            6789999999987 9999999999999998887766654    56677788886 3332221  2      468999999


Q ss_pred             CCCchH-H-HHHHhcccCcEEEEEecc
Q psy2961          88 VGGNSA-T-NLLRTLVSKGVMVTYGGM  112 (202)
Q Consensus        88 ~g~~~~-~-~~~~~l~~~G~~v~~g~~  112 (202)
                      ++.... . ..++.|+++|+++.+|..
T Consensus       337 tgt~~~i~~~~l~~mk~ggilvnvG~~  363 (494)
T 3ce6_A          337 TGNKDIIMLEHIKAMKDHAILGNIGHF  363 (494)
T ss_dssp             SSSSCSBCHHHHHHSCTTCEEEECSSS
T ss_pred             CCCHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            987764 3 478999999999999854

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=98.71  E-value=3.5e-07  Score=67.25  Aligned_cols=106  Identities=14%  Similarity=0.120  Sum_probs=73.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.++++..++..+.+++.|.+...   |   +++... +.+... .+++
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~i   87 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIHV   87 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCCCC
Confidence            5899999999999999999999999999998888777655555666666655333   2   344444 433322 2579


Q ss_pred             eEEEecCCCch--------------------------HHHHHHhc---ccCcEEEEEeccCCC
Q psy2961          82 KLALNCVGGNS--------------------------ATNLLRTL---VSKGVMVTYGGMSRE  115 (202)
Q Consensus        82 d~vid~~g~~~--------------------------~~~~~~~l---~~~G~~v~~g~~~~~  115 (202)
                      |++++++|...                          ...+++.|   ..+|++|.++...+.
T Consensus        88 DiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~  150 (255)
T 4g81_D           88 DILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQ  150 (255)
T ss_dssp             CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGT
T ss_pred             cEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhc
Confidence            99999998320                          11234445   256999999866543

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=98.60  E-value=2e-07  Score=69.18  Aligned_cols=102  Identities=18%  Similarity=0.205  Sum_probs=69.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.++++..   .+.++++|...+.   |   +++... +.+... -+++
T Consensus        28 ~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l---~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~i  104 (273)
T 4fgs_A           28 NAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVL---DAAIAEIGGGAVGIQADSANLAELDRLYEKVKAEAGRI  104 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHH---HHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCE
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHH---HHHHHHcCCCeEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            588999999999999999999999999999888877642   2344566654322   2   333333 222211 1579


Q ss_pred             eEEEecCCCch--------------------------HHHHHHhcccCcEEEEEeccCC
Q psy2961          82 KLALNCVGGNS--------------------------ATNLLRTLVSKGVMVTYGGMSR  114 (202)
Q Consensus        82 d~vid~~g~~~--------------------------~~~~~~~l~~~G~~v~~g~~~~  114 (202)
                      |++++++|...                          ...+++.|+.+|++|.++...+
T Consensus       105 DiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~~  163 (273)
T 4fgs_A          105 DVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAG  163 (273)
T ss_dssp             EEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGG
T ss_pred             CEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehhh
Confidence            99999987420                          1123556788899999886554

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=98.56  E-value=1e-06  Score=64.91  Aligned_cols=104  Identities=14%  Similarity=0.193  Sum_probs=70.2

Q ss_pred             CCCEEEEeCCCc--HHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCce--Ee--C---hhHHHh-H---HHhh
Q psy2961          10 PGDVVIQNGANS--ACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY--VF--T---EEELRN-I---SRDA   76 (202)
Q Consensus        10 ~g~~VlI~g~~~--~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~--v~--~---~~~~~~-~---~~~~   76 (202)
                      .|+++||+|++|  |+|.++++.+...|++|+.+.++++..++..+.+++++...  .+  |   +++... +   .+.+
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGKDV   84 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            589999999875  89999999999999999999888776555555566665422  11  3   333333 2   2223


Q ss_pred             CCCCCeEEEecCCCc---------------hHH---------------HHHHhcccCcEEEEEeccCCC
Q psy2961          77 SIPKPKLALNCVGGN---------------SAT---------------NLLRTLVSKGVMVTYGGMSRE  115 (202)
Q Consensus        77 ~~~~~d~vid~~g~~---------------~~~---------------~~~~~l~~~G~~v~~g~~~~~  115 (202)
                        +++|++++++|..               .+.               .....++.+|++|.++...+.
T Consensus        85 --G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~~~  151 (256)
T 4fs3_A           85 --GNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGE  151 (256)
T ss_dssp             --CCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGGGT
T ss_pred             --CCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEeccccc
Confidence              5799999988731               000               123345778999999866543

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=98.54  E-value=5.5e-07  Score=70.72  Aligned_cols=93  Identities=13%  Similarity=0.194  Sum_probs=66.1

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcccHHHHH-HHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEe
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLK-SYLKSLGADYVFTEEELRNISRDASIPKPKLALN   86 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~~~~~~~-~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid   86 (202)
                      .+|++|+|+|+| ++|.++++.++..|+ +|+++.++.+    +. +.++++|++ +++..++.+   ..  .++|+|++
T Consensus       165 l~g~~VlIiGaG-~iG~~~a~~l~~~G~~~V~v~~r~~~----ra~~la~~~g~~-~~~~~~l~~---~l--~~aDvVi~  233 (404)
T 1gpj_A          165 LHDKTVLVVGAG-EMGKTVAKSLVDRGVRAVLVANRTYE----RAVELARDLGGE-AVRFDELVD---HL--ARSDVVVS  233 (404)
T ss_dssp             CTTCEEEEESCC-HHHHHHHHHHHHHCCSEEEEECSSHH----HHHHHHHHHTCE-ECCGGGHHH---HH--HTCSEEEE
T ss_pred             ccCCEEEEEChH-HHHHHHHHHHHHCCCCEEEEEeCCHH----HHHHHHHHcCCc-eecHHhHHH---Hh--cCCCEEEE
Confidence            479999999996 999999999999999 6666665554    33 566778876 445555444   11  36899999


Q ss_pred             cCCCchHH---HHHHh--c--ccCcEEEEEecc
Q psy2961          87 CVGGNSAT---NLLRT--L--VSKGVMVTYGGM  112 (202)
Q Consensus        87 ~~g~~~~~---~~~~~--l--~~~G~~v~~g~~  112 (202)
                      |++.+...   ..+..  +  ++++.++.++..
T Consensus       234 at~~~~~~~~~~~l~~~~lk~r~~~~~v~vdia  266 (404)
T 1gpj_A          234 ATAAPHPVIHVDDVREALRKRDRRSPILIIDIA  266 (404)
T ss_dssp             CCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECC
T ss_pred             ccCCCCceecHHHHHHHHHhccCCCCEEEEEcc
Confidence            99865432   34554  4  567777777744

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=98.49  E-value=7.5e-07  Score=65.43  Aligned_cols=80  Identities=16%  Similarity=0.264  Sum_probs=58.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.++++..++..+.+++.|.+...   |   +++... +.+... -+++
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~i   85 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSRI   85 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            5899999999999999999999999999999888877655555666777765432   2   344333 322211 1579


Q ss_pred             eEEEecCC
Q psy2961          82 KLALNCVG   89 (202)
Q Consensus        82 d~vid~~g   89 (202)
                      |++++++|
T Consensus        86 DiLVNNAG   93 (254)
T 4fn4_A           86 DVLCNNAG   93 (254)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCc
Confidence            99999987

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=98.44  E-value=1.7e-06  Score=63.51  Aligned_cols=81  Identities=17%  Similarity=0.226  Sum_probs=58.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhCCCCCe
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDASIPKPK   82 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~~~~~d   82 (202)
                      .+.++||+|+++++|.++++.+...|++|+.+.++.+..++..+.+++.+.....   |   .++... +.+....+++|
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~g~id   85 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAHAPLE   85 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHSCEE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhhCCce
Confidence            5789999999999999999999999999999998887655555555555543222   2   333433 33322225799


Q ss_pred             EEEecCCC
Q psy2961          83 LALNCVGG   90 (202)
Q Consensus        83 ~vid~~g~   90 (202)
                      ++|.++|.
T Consensus        86 ~lv~nAg~   93 (252)
T 3h7a_A           86 VTIFNVGA   93 (252)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCc
Confidence            99999983

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=98.42  E-value=3.1e-06  Score=63.76  Aligned_cols=80  Identities=15%  Similarity=0.187  Sum_probs=54.6

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceE----eC---h-hHHHh----HHHhh
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV----FT---E-EELRN----ISRDA   76 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v----~~---~-~~~~~----~~~~~   76 (202)
                      ..+.+|||+|+++++|.++++.+...|++|+.++++.+...+..+.+++.+...+    .|   . .....    +.+..
T Consensus        10 ~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~~   89 (311)
T 3o26_A           10 TKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTHF   89 (311)
T ss_dssp             --CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHhC
Confidence            4578999999999999999999889999999999887754444455554443211    13   2 22222    22222


Q ss_pred             CCCCCeEEEecCCC
Q psy2961          77 SIPKPKLALNCVGG   90 (202)
Q Consensus        77 ~~~~~d~vid~~g~   90 (202)
                        +++|++|.++|.
T Consensus        90 --g~iD~lv~nAg~  101 (311)
T 3o26_A           90 --GKLDILVNNAGV  101 (311)
T ss_dssp             --SSCCEEEECCCC
T ss_pred             --CCCCEEEECCcc
Confidence              479999999984

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.41  E-value=2.5e-06  Score=54.72  Aligned_cols=93  Identities=6%  Similarity=-0.018  Sum_probs=61.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC-CcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCCCeEEEec
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWG-LKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNC   87 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g-~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~vid~   87 (202)
                      ++.+|+|+|+ |.+|..+++.+...| .+++++.++++    +.+.+...+...+. +..+...+.+..  .++|+||+|
T Consensus         4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~----~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~d~vi~~   76 (118)
T 3ic5_A            4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLA----ALAVLNRMGVATKQVDAKDEAGLAKAL--GGFDAVISA   76 (118)
T ss_dssp             TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHH----HHHHHHTTTCEEEECCTTCHHHHHHHT--TTCSEEEEC
T ss_pred             CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHH----HHHHHHhCCCcEEEecCCCHHHHHHHH--cCCCEEEEC
Confidence            4578999999 699999999999999 77777776654    45566666655443 333322244443  478999999


Q ss_pred             CCCchHHHHHH-hcccCcEEEEE
Q psy2961          88 VGGNSATNLLR-TLVSKGVMVTY  109 (202)
Q Consensus        88 ~g~~~~~~~~~-~l~~~G~~v~~  109 (202)
                      ++......... +...+..++.+
T Consensus        77 ~~~~~~~~~~~~~~~~g~~~~~~   99 (118)
T 3ic5_A           77 APFFLTPIIAKAAKAAGAHYFDL   99 (118)
T ss_dssp             SCGGGHHHHHHHHHHTTCEEECC
T ss_pred             CCchhhHHHHHHHHHhCCCEEEe
Confidence            98665555444 44455555543

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=98.41  E-value=5e-06  Score=62.05  Aligned_cols=105  Identities=19%  Similarity=0.264  Sum_probs=66.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccH-HHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDI-DKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~-~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~   80 (202)
                      .|.++||+|+++++|.++++.+...|++|+.+.++.+.. ++..+.+++.+.....   |   .++... +.+... -++
T Consensus        28 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~  107 (283)
T 1g0o_A           28 EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFGK  107 (283)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            478999999999999999999999999999988776431 1122334455543221   2   233333 222111 147


Q ss_pred             CeEEEecCCCch--------------------------HHHHHHhcccCcEEEEEeccCC
Q psy2961          81 PKLALNCVGGNS--------------------------ATNLLRTLVSKGVMVTYGGMSR  114 (202)
Q Consensus        81 ~d~vid~~g~~~--------------------------~~~~~~~l~~~G~~v~~g~~~~  114 (202)
                      +|++|+++|...                          ...+++.|+.+|++|.++....
T Consensus       108 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~  167 (283)
T 1g0o_A          108 LDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITG  167 (283)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGG
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEechhh
Confidence            999999987321                          0113445566799999986544

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=98.40  E-value=5.2e-06  Score=61.44  Aligned_cols=79  Identities=13%  Similarity=0.231  Sum_probs=54.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCC-ceE----eC---hhHHHhHHHhhCCCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA-DYV----FT---EEELRNISRDASIPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~-~~v----~~---~~~~~~~~~~~~~~~~   81 (202)
                      .|.++||+|+++++|.++++.+...|++|+.+.++++...+..+.+++.+. ..+    .|   .+....+.+..  +++
T Consensus         9 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--g~i   86 (267)
T 3t4x_A            9 KGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKY--PKV   86 (267)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHC--CCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhc--CCC
Confidence            578999999999999999999999999999998887654444444444332 111    13   22333322222  579


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|+++|.
T Consensus        87 d~lv~nAg~   95 (267)
T 3t4x_A           87 DILINNLGI   95 (267)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999983

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=98.39  E-value=7.4e-06  Score=60.80  Aligned_cols=103  Identities=17%  Similarity=0.194  Sum_probs=66.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCccc-HHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD-IDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~-~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~   80 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.++... .++..+.+++.|.....   |   +++... +.+... .++
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  109 (271)
T 3v2g_A           30 AGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEALGG  109 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            57899999999999999999999999999888666532 22223344455554322   2   333333 332211 147


Q ss_pred             CeEEEecCCCch--------------------------HHHHHHhcccCcEEEEEecc
Q psy2961          81 PKLALNCVGGNS--------------------------ATNLLRTLVSKGVMVTYGGM  112 (202)
Q Consensus        81 ~d~vid~~g~~~--------------------------~~~~~~~l~~~G~~v~~g~~  112 (202)
                      +|++|.++|...                          ...+++.|+.+|++|.++..
T Consensus       110 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~  167 (271)
T 3v2g_A          110 LDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSN  167 (271)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCG
T ss_pred             CcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeCh
Confidence            999999987310                          11134566778999998754

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=98.37  E-value=9.8e-06  Score=60.04  Aligned_cols=104  Identities=22%  Similarity=0.283  Sum_probs=67.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCccc-HHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD-IDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~-~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~   80 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.++... .++..+.+++.+.....   |   .++... +.+... .++
T Consensus        17 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   96 (270)
T 3is3_A           17 DGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHFGH   96 (270)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            57899999999999999999999999999887765432 22223444555544322   2   333333 322211 147


Q ss_pred             CeEEEecCCCch--------------------------HHHHHHhcccCcEEEEEeccC
Q psy2961          81 PKLALNCVGGNS--------------------------ATNLLRTLVSKGVMVTYGGMS  113 (202)
Q Consensus        81 ~d~vid~~g~~~--------------------------~~~~~~~l~~~G~~v~~g~~~  113 (202)
                      +|++|+++|...                          ...+++.|+.+|++|.++...
T Consensus        97 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~  155 (270)
T 3is3_A           97 LDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNT  155 (270)
T ss_dssp             CCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTT
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCch
Confidence            999999988410                          112355677799999998655

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=98.37  E-value=7.7e-06  Score=59.71  Aligned_cols=81  Identities=19%  Similarity=0.327  Sum_probs=52.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEec-CcccHHHHHHHHHhcCCceE-e--C---hhHHHh-HHHhhC-CCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVR-NRDDIDKLKSYLKSLGADYV-F--T---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~-~~~~~~~~~~~~~~lg~~~v-~--~---~~~~~~-~~~~~~-~~~   80 (202)
                      .|.++||+|+++++|.++++.+...|++|+.+.+ +++..++..+.+++.+.... +  |   +++... +.+... .++
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   82 (246)
T 2uvd_A            3 KGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVDVFGQ   82 (246)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            4689999999999999999999999999999887 44432222333444454322 1  3   333333 332211 147


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|++|+++|.
T Consensus        83 id~lv~nAg~   92 (246)
T 2uvd_A           83 VDILVNNAGV   92 (246)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999873

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=98.37  E-value=3.8e-06  Score=63.13  Aligned_cols=92  Identities=18%  Similarity=0.223  Sum_probs=68.4

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCV   88 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~   88 (202)
                      -.|++|+|.|+| .+|..+++.++.+|++|++..++.+    +.+.+.++|+.. ++..++.+   ..  ...|+|+.++
T Consensus       153 l~g~~v~IiG~G-~iG~~~a~~l~~~G~~V~~~dr~~~----~~~~~~~~g~~~-~~~~~l~~---~l--~~aDvVi~~~  221 (293)
T 3d4o_A          153 IHGANVAVLGLG-RVGMSVARKFAALGAKVKVGARESD----LLARIAEMGMEP-FHISKAAQ---EL--RDVDVCINTI  221 (293)
T ss_dssp             STTCEEEEECCS-HHHHHHHHHHHHTTCEEEEEESSHH----HHHHHHHTTSEE-EEGGGHHH---HT--TTCSEEEECC
T ss_pred             CCCCEEEEEeeC-HHHHHHHHHHHhCCCEEEEEECCHH----HHHHHHHCCCee-cChhhHHH---Hh--cCCCEEEECC
Confidence            468999999988 9999999999999998887776654    345556777653 33333333   22  4689999999


Q ss_pred             CCchHH-HHHHhcccCcEEEEEec
Q psy2961          89 GGNSAT-NLLRTLVSKGVMVTYGG  111 (202)
Q Consensus        89 g~~~~~-~~~~~l~~~G~~v~~g~  111 (202)
                      ...... ..+..|++++.++.++.
T Consensus       222 p~~~i~~~~l~~mk~~~~lin~ar  245 (293)
T 3d4o_A          222 PALVVTANVLAEMPSHTFVIDLAS  245 (293)
T ss_dssp             SSCCBCHHHHHHSCTTCEEEECSS
T ss_pred             ChHHhCHHHHHhcCCCCEEEEecC
Confidence            764433 36788999999999874

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=98.36  E-value=5e-06  Score=61.25  Aligned_cols=81  Identities=15%  Similarity=0.190  Sum_probs=52.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCccc-HHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD-IDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~-~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~   80 (202)
                      .|.++||+|+++++|.++++.+...|++|+.+.++.+. ..+..+.+++.+.....   |   .++... +.+... -++
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   86 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADKFGE   86 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHHHCS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            57899999999999999999999999999988555442 22223344445543221   2   333333 322211 147


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|++|.++|.
T Consensus        87 id~lv~nAg~   96 (259)
T 3edm_A           87 IHGLVHVAGG   96 (259)
T ss_dssp             EEEEEECCCC
T ss_pred             CCEEEECCCc
Confidence            9999998873

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=98.36  E-value=1.4e-05  Score=59.26  Aligned_cols=81  Identities=20%  Similarity=0.263  Sum_probs=54.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceE-e--C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-F--T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v-~--~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .+.+|||+|++|++|..+++.+...|++|+.+.++++..++..+.+++.+.... +  |   .+++.. +.+... -+++
T Consensus        30 ~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~i  109 (272)
T 1yb1_A           30 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGDV  109 (272)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCCC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHHHCCCC
Confidence            468999999999999999999999999999988876643333344444454321 1  3   233333 332211 1479


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.++|.
T Consensus       110 D~li~~Ag~  118 (272)
T 1yb1_A          110 SILVNNAGV  118 (272)
T ss_dssp             SEEEECCCC
T ss_pred             cEEEECCCc
Confidence            999999873

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=98.35  E-value=4.2e-06  Score=60.61  Aligned_cols=95  Identities=19%  Similarity=0.264  Sum_probs=66.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCC-ceEe-ChhHHHh-HHHhhCCCCCeEEEe
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA-DYVF-TEEELRN-ISRDASIPKPKLALN   86 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~-~~v~-~~~~~~~-~~~~~~~~~~d~vid   86 (202)
                      .|.+|||+|++|++|..+++.+...|++|++++++++.    .+.+...+. ..+. |-.   + +.+..  .++|+||.
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~----~~~~~~~~~~~~~~~Dl~---~~~~~~~--~~~D~vi~   90 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQ----GPELRERGASDIVVANLE---EDFSHAF--ASIDAVVF   90 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGG----HHHHHHTTCSEEEECCTT---SCCGGGG--TTCSEEEE
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHH----HHHHHhCCCceEEEcccH---HHHHHHH--cCCCEEEE
Confidence            47899999999999999999999999999999998774    455555566 4443 222   4 55544  47999999


Q ss_pred             cCCCch--------------HHHHHHhcc--cCcEEEEEeccC
Q psy2961          87 CVGGNS--------------ATNLLRTLV--SKGVMVTYGGMS  113 (202)
Q Consensus        87 ~~g~~~--------------~~~~~~~l~--~~G~~v~~g~~~  113 (202)
                      ++|...              ...+++.++  ..+++|.++...
T Consensus        91 ~ag~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~  133 (236)
T 3e8x_A           91 AAGSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVG  133 (236)
T ss_dssp             CCCCCTTSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCTT
T ss_pred             CCCCCCCCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecCC
Confidence            998532              122334333  247899988644

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=98.35  E-value=4.3e-06  Score=61.58  Aligned_cols=81  Identities=19%  Similarity=0.304  Sum_probs=52.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhc--CCc--eE-eC---hhHHHh-HHHhhCCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL--GAD--YV-FT---EEELRN-ISRDASIPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~l--g~~--~v-~~---~~~~~~-~~~~~~~~~   80 (202)
                      .+.++||+|+++++|.++++.+...|++|+.+.++++...+..+.++..  +..  .+ .|   ++++.. +.+.....+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (260)
T 2z1n_A            6 QGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARDLGG   85 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            4689999999999999999998899999999888765432222333322  212  11 13   334444 443332234


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|++|+++|.
T Consensus        86 id~lv~~Ag~   95 (260)
T 2z1n_A           86 ADILVYSTGG   95 (260)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999883

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=98.35  E-value=6.8e-06  Score=60.82  Aligned_cols=78  Identities=17%  Similarity=0.210  Sum_probs=53.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.++.+.   ..+..++++.....   |   .++... +.+... .+++
T Consensus        26 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~---~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i  102 (266)
T 3grp_A           26 TGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDK---LKEIAADLGKDVFVFSANLSDRKSIKQLAEVAEREMEGI  102 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHH---HHHHHHHHCSSEEEEECCTTSHHHHHHHHHHHHHHHTSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH---HHHHHHHhCCceEEEEeecCCHHHHHHHHHHHHHHcCCC
Confidence            47899999999999999999999999999888877653   22334555544322   2   333333 222211 1479


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|+++|.
T Consensus       103 D~lvnnAg~  111 (266)
T 3grp_A          103 DILVNNAGI  111 (266)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999984

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=98.34  E-value=3.7e-06  Score=62.56  Aligned_cols=81  Identities=11%  Similarity=0.094  Sum_probs=57.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhCCCCCe
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDASIPKPK   82 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~~~~~d   82 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.++++...+..+.+++.+.....   |   ..+... +.+....+++|
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~g~iD  111 (275)
T 4imr_A           32 RGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEAIAPVD  111 (275)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHHhCCCC
Confidence            5789999999999999999999999999999998877654444555555543222   2   233333 33222225799


Q ss_pred             EEEecCCC
Q psy2961          83 LALNCVGG   90 (202)
Q Consensus        83 ~vid~~g~   90 (202)
                      ++|.++|.
T Consensus       112 ~lvnnAg~  119 (275)
T 4imr_A          112 ILVINASA  119 (275)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999983

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=98.33  E-value=8.2e-06  Score=61.16  Aligned_cols=81  Identities=17%  Similarity=0.262  Sum_probs=53.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHH-HHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDK-LKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~-~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~   80 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.++.+...+ ..+.+++.+.....   |   +++... +.+... .++
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  125 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQLGS  125 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            57899999999999999999999999999988877653211 22333445544322   2   333333 222211 147


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|++|.++|.
T Consensus       126 iD~lvnnAg~  135 (291)
T 3ijr_A          126 LNILVNNVAQ  135 (291)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999998863

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=98.33  E-value=6.4e-06  Score=60.98  Aligned_cols=104  Identities=12%  Similarity=0.165  Sum_probs=64.7

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCccc-HHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD-IDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IP   79 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~-~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~   79 (202)
                      ..|+++||+|+++++|.++++.+...|++|+.+.++.+. .++..+.++..+.....   |   .++... +.+... .+
T Consensus        25 ~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  104 (267)
T 3u5t_A           25 ETNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEEAFG  104 (267)
T ss_dssp             --CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            357899999999999999999888899999887655443 22223334445543222   3   333333 222211 14


Q ss_pred             CCeEEEecCCCch--------------------------HHHHHHhcccCcEEEEEecc
Q psy2961          80 KPKLALNCVGGNS--------------------------ATNLLRTLVSKGVMVTYGGM  112 (202)
Q Consensus        80 ~~d~vid~~g~~~--------------------------~~~~~~~l~~~G~~v~~g~~  112 (202)
                      ++|++|+++|...                          ...+++.++.+|++|.++..
T Consensus       105 ~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~  163 (267)
T 3u5t_A          105 GVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTS  163 (267)
T ss_dssp             CEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCT
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeCh
Confidence            7999999997310                          11134456678999998753

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=98.33  E-value=1.9e-06  Score=62.94  Aligned_cols=79  Identities=15%  Similarity=0.113  Sum_probs=57.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---ChhHHHhHHHhhCCCCCeEEEe
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TEEELRNISRDASIPKPKLALN   86 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~~~~~~~~~~~~~~~~~d~vid   86 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.++.+  ++..+.+++.|.....   |-.+...+++.....++|++++
T Consensus         8 ~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~--~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~g~iDiLVN   85 (247)
T 4hp8_A            8 EGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAP--DETLDIIAKDGGNASALLIDFADPLAAKDSFTDAGFDILVN   85 (247)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCC--HHHHHHHHHTTCCEEEEECCTTSTTTTTTSSTTTCCCEEEE
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcH--HHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHhCCCCEEEE
Confidence            5899999999999999999999999999988877654  3456677777765433   2222111333334467999999


Q ss_pred             cCCC
Q psy2961          87 CVGG   90 (202)
Q Consensus        87 ~~g~   90 (202)
                      ++|.
T Consensus        86 NAGi   89 (247)
T 4hp8_A           86 NAGI   89 (247)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9983

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=98.33  E-value=4.3e-06  Score=62.50  Aligned_cols=101  Identities=12%  Similarity=0.106  Sum_probs=67.9

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCCCeE
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKL   83 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~   83 (202)
                      .+++++|++||..|+| +.|..++.+|+..|++|+++..+++.....++.+++.|.+.+- -..|..++    ....||+
T Consensus       117 la~l~~g~rVLDIGcG-~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l----~d~~FDv  191 (298)
T 3fpf_A          117 LGRFRRGERAVFIGGG-PLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVI----DGLEFDV  191 (298)
T ss_dssp             HTTCCTTCEEEEECCC-SSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGG----GGCCCSE
T ss_pred             HcCCCCcCEEEEECCC-ccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhC----CCCCcCE
Confidence            4678999999999998 4466677788888999999988887543334444445643221 01121111    1368999


Q ss_pred             EEecCCCc----hHHHHHHhcccCcEEEEEe
Q psy2961          84 ALNCVGGN----SATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        84 vid~~g~~----~~~~~~~~l~~~G~~v~~g  110 (202)
                      |+-....+    .+..+.+.|+|||+++...
T Consensus       192 V~~~a~~~d~~~~l~el~r~LkPGG~Lvv~~  222 (298)
T 3fpf_A          192 LMVAALAEPKRRVFRNIHRYVDTETRIIYRT  222 (298)
T ss_dssp             EEECTTCSCHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             EEECCCccCHHHHHHHHHHHcCCCcEEEEEc
Confidence            98655543    2334788999999999865

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=98.32  E-value=1.1e-05  Score=60.53  Aligned_cols=81  Identities=12%  Similarity=0.091  Sum_probs=53.1

Q ss_pred             CCCEEEEeCCCc--HHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe--C---hhHHHh-HHHhhC-CCC
Q psy2961          10 PGDVVIQNGANS--ACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--T---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~--~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~--~---~~~~~~-~~~~~~-~~~   80 (202)
                      .|+++||+|++|  ++|.++++.+...|++|+.+.++++..+...+..++.+....+  |   .++... +.+... -++
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  108 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLAEEWGS  108 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            478999999987  9999999999999999998888765322222333444543333  3   333333 322211 147


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|++|+++|.
T Consensus       109 iD~lVnnAG~  118 (296)
T 3k31_A          109 LDFVVHAVAF  118 (296)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCc
Confidence            9999999974

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=98.32  E-value=7.1e-06  Score=60.59  Aligned_cols=81  Identities=12%  Similarity=0.085  Sum_probs=53.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCcEEEEecCcccHHHHHHHHHhcCCc--eEe-C---hhHHHh-HHHhhC-CCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARH-WGLKTINIVRNRDDIDKLKSYLKSLGAD--YVF-T---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~-~g~~vi~~~~~~~~~~~~~~~~~~lg~~--~v~-~---~~~~~~-~~~~~~-~~~   80 (202)
                      .+.+|||+|++|++|..+++.+.. .|++|+.++++.+...+..+.++..+..  .+. |   .+++.. +.+... .++
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~   82 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGG   82 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            578999999999999999888887 9999999988766433333444444432  111 3   233333 322211 147


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|++|.++|.
T Consensus        83 id~li~~Ag~   92 (276)
T 1wma_A           83 LDVLVNNAGI   92 (276)
T ss_dssp             EEEEEECCCC
T ss_pred             CCEEEECCcc
Confidence            9999999873

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=98.31  E-value=4.3e-06  Score=61.49  Aligned_cols=100  Identities=15%  Similarity=0.126  Sum_probs=65.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-H---HHhhCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-I---SRDASIP   79 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~---~~~~~~~   79 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.++++..   .+..++++.....   |   .++... +   .+..  +
T Consensus         7 ~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~--g   81 (255)
T 4eso_A            7 QGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNI---ARIREEFGPRVHALRSDIADLNEIAVLGAAAGQTL--G   81 (255)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHH---HHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHH--S
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH---HHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHHh--C
Confidence            578999999999999999999999999999988876532   2223344433211   2   233333 2   2222  4


Q ss_pred             CCeEEEecCCCch--------------------------HHHHHHhcccCcEEEEEeccCC
Q psy2961          80 KPKLALNCVGGNS--------------------------ATNLLRTLVSKGVMVTYGGMSR  114 (202)
Q Consensus        80 ~~d~vid~~g~~~--------------------------~~~~~~~l~~~G~~v~~g~~~~  114 (202)
                      ++|++|+++|...                          ...++..++.+|++|.++....
T Consensus        82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~  142 (255)
T 4eso_A           82 AIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVAD  142 (255)
T ss_dssp             SEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGG
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhh
Confidence            7999999987421                          0112345566899999886544

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=98.29  E-value=1.4e-05  Score=59.64  Aligned_cols=103  Identities=15%  Similarity=0.146  Sum_probs=64.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecC------------cccHHHHHHHHHhcCCceEe---C---hhHHHh
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRN------------RDDIDKLKSYLKSLGADYVF---T---EEELRN   71 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~------------~~~~~~~~~~~~~lg~~~v~---~---~~~~~~   71 (202)
                      .|.+|||+|+++++|.++++.+...|++|+.+.++            .+...+....++..+.....   |   .++...
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~   88 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAVSR   88 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHHHH
Confidence            57899999999999999999999999999988766            22222222333444543222   2   333333


Q ss_pred             -HHHhhC-CCCCeEEEecCCCch---------H---------------HHHHHhcccCcEEEEEecc
Q psy2961          72 -ISRDAS-IPKPKLALNCVGGNS---------A---------------TNLLRTLVSKGVMVTYGGM  112 (202)
Q Consensus        72 -~~~~~~-~~~~d~vid~~g~~~---------~---------------~~~~~~l~~~G~~v~~g~~  112 (202)
                       +.+... .+++|++|+++|...         +               ..++..|..+|+++.++..
T Consensus        89 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~  155 (287)
T 3pxx_A           89 ELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSV  155 (287)
T ss_dssp             HHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCH
T ss_pred             HHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccc
Confidence             222211 147999999987421         0               1123445678999998754

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=98.29  E-value=4.9e-06  Score=61.56  Aligned_cols=81  Identities=14%  Similarity=0.207  Sum_probs=55.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .++++||+|+++++|.++++.+...|++|+.+.++.+..++..+.+++.+.....   |   .++... +.+... .+++
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   82 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWGRI   82 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            4689999999999999999999999999999988876544444445555543222   3   333333 322211 1479


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|+++|.
T Consensus        83 D~lVnnAG~   91 (264)
T 3tfo_A           83 DVLVNNAGV   91 (264)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999873

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=98.29  E-value=1.2e-05  Score=59.80  Aligned_cols=81  Identities=23%  Similarity=0.308  Sum_probs=53.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCc-e--Ee--C---hhHHHh-HHHhhC-CC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD-Y--VF--T---EEELRN-ISRDAS-IP   79 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~-~--v~--~---~~~~~~-~~~~~~-~~   79 (202)
                      .+.++||+|++|++|..+++.+...|++|+.+.++.+..++..+.+++.+.. .  ++  |   .+++.. +.+... .+
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  110 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS  110 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhCC
Confidence            4689999999999999999999999999999988766433333444444421 1  11  3   233333 322211 14


Q ss_pred             CCeEEEecCCC
Q psy2961          80 KPKLALNCVGG   90 (202)
Q Consensus        80 ~~d~vid~~g~   90 (202)
                      ++|++|.++|.
T Consensus       111 ~iD~vi~~Ag~  121 (279)
T 1xg5_A          111 GVDICINNAGL  121 (279)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999873

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=98.28  E-value=6.3e-06  Score=62.09  Aligned_cols=92  Identities=14%  Similarity=0.215  Sum_probs=68.3

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCV   88 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~   88 (202)
                      -.|.+|+|.|+| .+|..+++.++..|++|++..++.+    +.+.+.++|... ++..++.+   ..  .+.|+|+.++
T Consensus       155 l~g~~v~IiG~G-~iG~~~a~~l~~~G~~V~~~d~~~~----~~~~~~~~g~~~-~~~~~l~~---~l--~~aDvVi~~~  223 (300)
T 2rir_A          155 IHGSQVAVLGLG-RTGMTIARTFAALGANVKVGARSSA----HLARITEMGLVP-FHTDELKE---HV--KDIDICINTI  223 (300)
T ss_dssp             STTSEEEEECCS-HHHHHHHHHHHHTTCEEEEEESSHH----HHHHHHHTTCEE-EEGGGHHH---HS--TTCSEEEECC
T ss_pred             CCCCEEEEEccc-HHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHCCCeE-EchhhHHH---Hh--hCCCEEEECC
Confidence            468999999997 9999999999999998888776654    345555677653 33333333   22  4689999999


Q ss_pred             CCchHH-HHHHhcccCcEEEEEec
Q psy2961          89 GGNSAT-NLLRTLVSKGVMVTYGG  111 (202)
Q Consensus        89 g~~~~~-~~~~~l~~~G~~v~~g~  111 (202)
                      +..... ..+..|++++.++.++.
T Consensus       224 p~~~i~~~~~~~mk~g~~lin~a~  247 (300)
T 2rir_A          224 PSMILNQTVLSSMTPKTLILDLAS  247 (300)
T ss_dssp             SSCCBCHHHHTTSCTTCEEEECSS
T ss_pred             ChhhhCHHHHHhCCCCCEEEEEeC
Confidence            865443 36788999999999874

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.27  E-value=8.3e-07  Score=59.50  Aligned_cols=92  Identities=13%  Similarity=0.236  Sum_probs=63.2

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhCCCCCeEEEec
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNC   87 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~~~~~d~vid~   87 (202)
                      ..+.+|+|+|+| .+|.+.++.++..|+++++..++++.   ..+.+++++.+.. ...++.+ +      .++|+||.|
T Consensus        19 ~~~~~v~iiG~G-~iG~~~a~~l~~~g~~v~v~~r~~~~---~~~~a~~~~~~~~-~~~~~~~~~------~~~Divi~a   87 (144)
T 3oj0_A           19 NGGNKILLVGNG-MLASEIAPYFSYPQYKVTVAGRNIDH---VRAFAEKYEYEYV-LINDIDSLI------KNNDVIITA   87 (144)
T ss_dssp             HCCCEEEEECCS-HHHHHHGGGCCTTTCEEEEEESCHHH---HHHHHHHHTCEEE-ECSCHHHHH------HTCSEEEEC
T ss_pred             ccCCEEEEECCC-HHHHHHHHHHHhCCCEEEEEcCCHHH---HHHHHHHhCCceE-eecCHHHHh------cCCCEEEEe
Confidence            348999999986 99999999988899995555544432   2334566775432 2233333 3      357999999


Q ss_pred             CCCchHHHHHHhcccCcEEEEEec
Q psy2961          88 VGGNSATNLLRTLVSKGVMVTYGG  111 (202)
Q Consensus        88 ~g~~~~~~~~~~l~~~G~~v~~g~  111 (202)
                      ++..........+++++.++.++.
T Consensus        88 t~~~~~~~~~~~l~~g~~vid~~~  111 (144)
T 3oj0_A           88 TSSKTPIVEERSLMPGKLFIDLGN  111 (144)
T ss_dssp             SCCSSCSBCGGGCCTTCEEEECCS
T ss_pred             CCCCCcEeeHHHcCCCCEEEEccC
Confidence            987643323377889999988874

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=98.27  E-value=1.3e-05  Score=60.15  Aligned_cols=105  Identities=12%  Similarity=0.173  Sum_probs=65.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc--cHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD--DIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IP   79 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~--~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~   79 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.++.+  ..++..+.+++.+.....   |   .++... +.+... -+
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  127 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREALG  127 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            4789999999999999999999999999888776633  111122333445544322   2   233333 222211 15


Q ss_pred             CCeEEEecCCCch---------------------------HHHHHHhcccCcEEEEEeccCC
Q psy2961          80 KPKLALNCVGGNS---------------------------ATNLLRTLVSKGVMVTYGGMSR  114 (202)
Q Consensus        80 ~~d~vid~~g~~~---------------------------~~~~~~~l~~~G~~v~~g~~~~  114 (202)
                      ++|++|.++|...                           ...++..++.+|++|.++....
T Consensus       128 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~  189 (294)
T 3r3s_A          128 GLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQA  189 (294)
T ss_dssp             CCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGG
T ss_pred             CCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhh
Confidence            7999999987310                           0112345667899999986544

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=98.26  E-value=9.2e-06  Score=59.25  Aligned_cols=81  Identities=16%  Similarity=0.173  Sum_probs=56.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhh-CCCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDA-SIPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~-~~~~~   81 (202)
                      .+.++||+|+++++|..+++.+...|++|+.+.++++..++..+.+++.+.....   |   .++... +.+.. ..+++
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   83 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAENLAI   83 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTTCCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            4689999999999999999999999999999988876544444455555544222   2   333433 33322 12579


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.++|.
T Consensus        84 d~li~~Ag~   92 (247)
T 3lyl_A           84 DILVNNAGI   92 (247)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999874

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=98.26  E-value=1.1e-05  Score=59.16  Aligned_cols=83  Identities=14%  Similarity=0.170  Sum_probs=53.2

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEe-cCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-C
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIV-RNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-I   78 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~-~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~   78 (202)
                      ..++++|||+|+++++|.++++.+...|++|+.++ ++.+...+..+.+++.+.....   |   .++... +.+... .
T Consensus        10 ~~~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   89 (256)
T 3ezl_A           10 VMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAFDKVKAEV   89 (256)
T ss_dssp             ---CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCCHHHHHHHHHHHHHhc
Confidence            45788999999999999999999999999999888 4444333334444555543221   2   333333 332211 1


Q ss_pred             CCCeEEEecCCC
Q psy2961          79 PKPKLALNCVGG   90 (202)
Q Consensus        79 ~~~d~vid~~g~   90 (202)
                      +++|++|.++|.
T Consensus        90 g~id~lv~~Ag~  101 (256)
T 3ezl_A           90 GEIDVLVNNAGI  101 (256)
T ss_dssp             CCEEEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            479999999873

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=98.26  E-value=8e-06  Score=60.77  Aligned_cols=81  Identities=15%  Similarity=0.251  Sum_probs=56.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .|.++||+|+++++|.++++.+...|++|+.+.++.+..++..+.+++.+.....   |   .++... +.+... -+++
T Consensus        31 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~i  110 (276)
T 3r1i_A           31 SGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGELGGI  110 (276)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            4789999999999999999999999999999998877654445555555543221   2   333333 322211 1479


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|+++|.
T Consensus       111 D~lvnnAg~  119 (276)
T 3r1i_A          111 DIAVCNAGI  119 (276)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999874

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=98.26  E-value=7.4e-06  Score=60.80  Aligned_cols=81  Identities=16%  Similarity=0.218  Sum_probs=54.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC--CCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS--IPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~--~~~   80 (202)
                      .|.++||+|+++++|.++++.+...|++|+.+.++++..++..+.+++.+.....   |   +++... +.+...  +++
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g~   99 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDGK   99 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTSC
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            4789999999999999999999999999999888776433333444444543211   3   333333 332211  147


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|++|+++|.
T Consensus       100 id~lv~nAg~  109 (273)
T 1ae1_A          100 LNILVNNAGV  109 (273)
T ss_dssp             CCEEEECCCC
T ss_pred             CcEEEECCCC
Confidence            9999999874

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=98.25  E-value=7.2e-06  Score=60.37  Aligned_cols=80  Identities=16%  Similarity=0.241  Sum_probs=53.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC--CCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS--IPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~--~~~   80 (202)
                      .|.++||+|+++++|.++++.+...|++|+.+.++++..++..+.+++.+.....   |   +++... +.+...  +++
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g~   87 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHGK   87 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTTC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            4789999999999999999998899999999888766433333334444433211   3   333333 333221  147


Q ss_pred             CeEEEecCC
Q psy2961          81 PKLALNCVG   89 (202)
Q Consensus        81 ~d~vid~~g   89 (202)
                      +|++|+++|
T Consensus        88 id~lv~~Ag   96 (260)
T 2ae2_A           88 LNILVNNAG   96 (260)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999987

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=98.24  E-value=1.6e-05  Score=58.61  Aligned_cols=81  Identities=9%  Similarity=0.129  Sum_probs=51.5

Q ss_pred             CCCEEEEeCCC--cHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCc--eEe--C---hhHHHh-HHHhhC-C
Q psy2961          10 PGDVVIQNGAN--SACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD--YVF--T---EEELRN-ISRDAS-I   78 (202)
Q Consensus        10 ~g~~VlI~g~~--~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~--~v~--~---~~~~~~-~~~~~~-~   78 (202)
                      .|.++||+|++  +|+|.++++.+...|++|+.+.++++..+...+..++++..  .++  |   +++... +.+... .
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   85 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQV   85 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHHh
Confidence            47899999999  55999999999999999998887754322223333444431  111  2   333333 322211 1


Q ss_pred             CCCeEEEecCCC
Q psy2961          79 PKPKLALNCVGG   90 (202)
Q Consensus        79 ~~~d~vid~~g~   90 (202)
                      +++|++|.++|.
T Consensus        86 g~id~li~~Ag~   97 (266)
T 3oig_A           86 GVIHGIAHCIAF   97 (266)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCeeEEEEcccc
Confidence            479999998873

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=98.24  E-value=5.2e-06  Score=61.84  Aligned_cols=83  Identities=16%  Similarity=0.235  Sum_probs=54.3

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CC
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IP   79 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~   79 (202)
                      ...++++||+|+++++|.++++.+...|++|+.+.++.+...+..+.+++.+.....   |   .++... +.+... -+
T Consensus        21 m~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  100 (279)
T 3sju_A           21 MSRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERFG  100 (279)
T ss_dssp             ----CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            346789999999999999999999999999999888876544444445555544222   2   333333 322211 14


Q ss_pred             CCeEEEecCCC
Q psy2961          80 KPKLALNCVGG   90 (202)
Q Consensus        80 ~~d~vid~~g~   90 (202)
                      ++|++|.++|.
T Consensus       101 ~id~lv~nAg~  111 (279)
T 3sju_A          101 PIGILVNSAGR  111 (279)
T ss_dssp             SCCEEEECCCC
T ss_pred             CCcEEEECCCC
Confidence            79999999874

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=98.24  E-value=2.3e-05  Score=58.73  Aligned_cols=105  Identities=12%  Similarity=0.067  Sum_probs=65.3

Q ss_pred             CCCCEEEEeCCCcH--HHHHHHHHHHHCCCcEEEEecCcccHHHHHHH-HHhcCCceEe--C---hhHHHh-HHHhhC-C
Q psy2961           9 SPGDVVIQNGANSA--CGQNVIQIARHWGLKTINIVRNRDDIDKLKSY-LKSLGADYVF--T---EEELRN-ISRDAS-I   78 (202)
Q Consensus         9 ~~g~~VlI~g~~~~--vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~-~~~lg~~~v~--~---~~~~~~-~~~~~~-~   78 (202)
                      -.|+++||+|++|+  +|.++++.+...|++|+.+.++++. .+..+. .++.+....+  |   .++... +.+... .
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  107 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDAL-KKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEKKW  107 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHH-HHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHH-HHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhc
Confidence            35789999999855  9999999999999999888777432 122222 2334432222  2   333333 332211 1


Q ss_pred             CCCeEEEecCCCch------------------------------HHHHHHhcccCcEEEEEeccCC
Q psy2961          79 PKPKLALNCVGGNS------------------------------ATNLLRTLVSKGVMVTYGGMSR  114 (202)
Q Consensus        79 ~~~d~vid~~g~~~------------------------------~~~~~~~l~~~G~~v~~g~~~~  114 (202)
                      +++|++|+++|...                              ...++..|+.+|++|.++....
T Consensus       108 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~  173 (293)
T 3grk_A          108 GKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGA  173 (293)
T ss_dssp             SCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGG
T ss_pred             CCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhh
Confidence            47999999987421                              0113445667899999986544

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=98.24  E-value=5.6e-06  Score=60.88  Aligned_cols=80  Identities=14%  Similarity=0.261  Sum_probs=53.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .|.++||+|+++++|.++++.+...|++|+.+.++.+..++..+.+++.+.....   |   +++... +.+... .+++
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   84 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKFGRI   84 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4789999999999999999999999999999888776433333333344433221   2   333333 322211 1479


Q ss_pred             eEEEecCC
Q psy2961          82 KLALNCVG   89 (202)
Q Consensus        82 d~vid~~g   89 (202)
                      |++|+++|
T Consensus        85 d~lv~nAg   92 (257)
T 3imf_A           85 DILINNAA   92 (257)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999998

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=98.24  E-value=1e-05  Score=59.76  Aligned_cols=82  Identities=11%  Similarity=0.204  Sum_probs=56.4

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~   80 (202)
                      -.|+++||+|+++++|.++++.+...|++|+.+.++.+..++..+.+++.+.....   |   .++... +.+... .++
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   88 (264)
T 3ucx_A            9 LTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAYGR   88 (264)
T ss_dssp             TTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            36789999999999999999999999999999988876544444445555543222   3   333333 332211 157


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|++|+++|.
T Consensus        89 id~lv~nAg~   98 (264)
T 3ucx_A           89 VDVVINNAFR   98 (264)
T ss_dssp             CSEEEECCCS
T ss_pred             CcEEEECCCC
Confidence            9999999864

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=98.24  E-value=7.8e-06  Score=60.65  Aligned_cols=81  Identities=14%  Similarity=0.152  Sum_probs=55.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .|.++||+|+++++|.++++.+...|++|+.+.++.+...+..+.+++.+.....   |   .++... +.+... .+++
T Consensus        25 ~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i  104 (271)
T 4ibo_A           25 GGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDEQGIDV  104 (271)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHHTCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHCCCC
Confidence            5789999999999999999999999999988887766544444455555544322   2   333333 332211 2479


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.++|.
T Consensus       105 D~lv~nAg~  113 (271)
T 4ibo_A          105 DILVNNAGI  113 (271)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999883

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=98.23  E-value=7.9e-06  Score=61.56  Aligned_cols=81  Identities=12%  Similarity=0.119  Sum_probs=55.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .|.+|||+|+++++|.++++.+...|++|+.+.++.+...+..+.++..+....+   |   .++... +.+... .+++
T Consensus        30 ~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i  109 (301)
T 3tjr_A           30 DGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLLGGV  109 (301)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhCCCC
Confidence            5789999999999999999999999999999988876544444445544543222   3   233333 322211 1479


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|+++|.
T Consensus       110 d~lvnnAg~  118 (301)
T 3tjr_A          110 DVVFSNAGI  118 (301)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCc
Confidence            999999983

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.23  E-value=3.1e-06  Score=57.42  Aligned_cols=89  Identities=11%  Similarity=0.140  Sum_probs=59.4

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHH-hcCCceEe-ChhHHHhHHHhhCCCCCeEE
Q psy2961           7 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK-SLGADYVF-TEEELRNISRDASIPKPKLA   84 (202)
Q Consensus         7 ~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~-~lg~~~v~-~~~~~~~~~~~~~~~~~d~v   84 (202)
                      .-.++++|+|+|+| .+|..+++.++..|.+|+++.++++    +.+.++ ..|...+. +..+...+.+. ...++|+|
T Consensus        15 ~~~~~~~v~IiG~G-~iG~~la~~L~~~g~~V~vid~~~~----~~~~~~~~~g~~~~~~d~~~~~~l~~~-~~~~ad~V   88 (155)
T 2g1u_A           15 KKQKSKYIVIFGCG-RLGSLIANLASSSGHSVVVVDKNEY----AFHRLNSEFSGFTVVGDAAEFETLKEC-GMEKADMV   88 (155)
T ss_dssp             --CCCCEEEEECCS-HHHHHHHHHHHHTTCEEEEEESCGG----GGGGSCTTCCSEEEESCTTSHHHHHTT-TGGGCSEE
T ss_pred             cccCCCcEEEECCC-HHHHHHHHHHHhCCCeEEEEECCHH----HHHHHHhcCCCcEEEecCCCHHHHHHc-CcccCCEE
Confidence            34578999999986 9999999999999999888877765    345555 56665443 22222213322 12468999


Q ss_pred             EecCCCchHHH-HHHhcc
Q psy2961          85 LNCVGGNSATN-LLRTLV  101 (202)
Q Consensus        85 id~~g~~~~~~-~~~~l~  101 (202)
                      |.|++.+.... +...++
T Consensus        89 i~~~~~~~~~~~~~~~~~  106 (155)
T 2g1u_A           89 FAFTNDDSTNFFISMNAR  106 (155)
T ss_dssp             EECSSCHHHHHHHHHHHH
T ss_pred             EEEeCCcHHHHHHHHHHH
Confidence            99999876544 334444

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=98.22  E-value=2.6e-05  Score=58.22  Aligned_cols=81  Identities=20%  Similarity=0.266  Sum_probs=52.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .+.+|||+|++|++|..+++.+...|++|+.+.++++..++..+.+++.+.....   |   .+++.. +.+... .+++
T Consensus        43 ~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~i  122 (285)
T 2c07_A           43 ENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKNV  122 (285)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence            3679999999999999999999889999998766655332223334444543221   3   233333 332211 2479


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.++|.
T Consensus       123 d~li~~Ag~  131 (285)
T 2c07_A          123 DILVNNAGI  131 (285)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999873

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=98.22  E-value=1e-05  Score=59.75  Aligned_cols=80  Identities=23%  Similarity=0.280  Sum_probs=51.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCccc---HHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-C
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD---IDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-I   78 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~---~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~   78 (202)
                      .|.++||+|+++++|.++++.+...|++|+.+.+....   ..+..+.+++.+.....   |   .++... +.+... .
T Consensus        10 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~   89 (262)
T 3ksu_A           10 KNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAEKEF   89 (262)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            57899999999999999999999999999988654332   11122233334443222   2   333333 322211 1


Q ss_pred             CCCeEEEecCC
Q psy2961          79 PKPKLALNCVG   89 (202)
Q Consensus        79 ~~~d~vid~~g   89 (202)
                      +++|++|+++|
T Consensus        90 g~iD~lvnnAg  100 (262)
T 3ksu_A           90 GKVDIAINTVG  100 (262)
T ss_dssp             CSEEEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            57999999998

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=98.22  E-value=8.1e-06  Score=60.01  Aligned_cols=81  Identities=16%  Similarity=0.229  Sum_probs=55.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .|.++||+|+++++|.++++.+...|++|+.+.++.+..++..+.+++.+.....   |   .++... +.+... .+++
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   90 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQFGKI   90 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            5789999999999999999988889999999888776543334445555544222   2   333333 222211 1479


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|+++|.
T Consensus        91 d~lv~nAg~   99 (256)
T 3gaf_A           91 TVLVNNAGG   99 (256)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999874

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=98.22  E-value=8.3e-06  Score=60.12  Aligned_cols=81  Identities=12%  Similarity=0.227  Sum_probs=55.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .|.+|||+|+++++|..+++.+...|++|+.+.++.+...+..+.+.+.+....+   |   .++... +..... .+.+
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i  107 (262)
T 3rkr_A           28 SGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAHGRC  107 (262)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence            5789999999999999999998899999999888876543334444555543222   2   233333 222111 1479


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.++|.
T Consensus       108 d~lv~~Ag~  116 (262)
T 3rkr_A          108 DVLVNNAGV  116 (262)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCc
Confidence            999999885

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=98.21  E-value=1.5e-05  Score=59.37  Aligned_cols=78  Identities=15%  Similarity=0.173  Sum_probs=52.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceE-e--C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-F--T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v-~--~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .|.++||+|+++++|.++++.+...|++|+.+.++.+.   ..+..++++.... +  |   .++... +.+... -+++
T Consensus        28 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~---~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i  104 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDA---ADAAATKIGCGAAACRVDVSDEQQIIAMVDACVAAFGGV  104 (277)
T ss_dssp             TTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHH---HHHHHHHHCSSCEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHH---HHHHHHHcCCcceEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            47899999999999999999999999999988877653   2233344543321 1  2   333333 222211 1479


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|+++|.
T Consensus       105 D~lvnnAg~  113 (277)
T 3gvc_A          105 DKLVANAGV  113 (277)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999884

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=98.21  E-value=3.1e-05  Score=56.35  Aligned_cols=81  Identities=16%  Similarity=0.246  Sum_probs=50.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEe-cCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIV-RNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~-~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~   80 (202)
                      .+.+|||+|++|++|..+++.+...|++|+.+. ++++..++..+.+++.+.....   |   +++... +.+... .++
T Consensus         4 ~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   83 (247)
T 2hq1_A            4 KGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMDAFGR   83 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            468999999999999999999999999998884 4444322223344444543221   2   233333 322111 147


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|++|.++|.
T Consensus        84 ~d~vi~~Ag~   93 (247)
T 2hq1_A           84 IDILVNNAGI   93 (247)
T ss_dssp             CCEEEECC--
T ss_pred             CCEEEECCCC
Confidence            9999999874

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=98.21  E-value=8.2e-06  Score=60.20  Aligned_cols=81  Identities=19%  Similarity=0.241  Sum_probs=54.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceE--e--C---hhHHHh-HHHhhC-CCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV--F--T---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v--~--~---~~~~~~-~~~~~~-~~~   80 (202)
                      .|.++||+|+++++|.++++.+...|++|+.+.++.+..++..+.+++.+...+  +  |   +++... +.+... -++
T Consensus         9 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   88 (262)
T 3pk0_A            9 QGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEFGG   88 (262)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            578999999999999999999999999999998887654333444555542211  1  2   333333 222211 147


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|++|+++|.
T Consensus        89 id~lvnnAg~   98 (262)
T 3pk0_A           89 IDVVCANAGV   98 (262)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999883

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=98.20  E-value=1.1e-05  Score=59.15  Aligned_cols=79  Identities=13%  Similarity=0.095  Sum_probs=54.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HH---HhhCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-IS---RDASIP   79 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~---~~~~~~   79 (202)
                      .+++|||+|+++++|..+++.+...|++|+.+.++.+...+..+.+++.+.....   |   +++... +.   +..  +
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~--g   85 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAEF--G   85 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH--S
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc--C
Confidence            5789999999999999999999999999999888776543334444444543222   2   333333 22   222  4


Q ss_pred             CCeEEEecCCC
Q psy2961          80 KPKLALNCVGG   90 (202)
Q Consensus        80 ~~d~vid~~g~   90 (202)
                      ++|++|.++|.
T Consensus        86 ~id~li~~Ag~   96 (253)
T 3qiv_A           86 GIDYLVNNAAI   96 (253)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            79999999874

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=98.20  E-value=9.8e-06  Score=60.51  Aligned_cols=81  Identities=17%  Similarity=0.258  Sum_probs=54.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~~   81 (202)
                      ++.++||+|+++++|.++++.+...|++|+.+.++.+...+..+.+++.+.....   |   +++... +.+... .+++
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i  106 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKFGHL  106 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            5789999999999999999999999999999888776433333444444443222   2   333333 322211 1579


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.++|.
T Consensus       107 D~lVnnAg~  115 (283)
T 3v8b_A          107 DIVVANAGI  115 (283)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999873

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=98.20  E-value=1.5e-05  Score=59.20  Aligned_cols=81  Identities=16%  Similarity=0.224  Sum_probs=54.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceE-e--C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-F--T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v-~--~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .+.++||+|+++++|.++++.+...|++|+.+.++++..++..+.+++.+.... +  |   .++... +.+... -+++
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i  100 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPV  100 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            468999999999999999999999999999988877643333344444454321 1  3   333333 332211 1479


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|+++|.
T Consensus       101 D~lv~~Ag~  109 (277)
T 2rhc_B          101 DVLVNNAGR  109 (277)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999873

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=98.19  E-value=1.3e-05  Score=59.04  Aligned_cols=80  Identities=20%  Similarity=0.243  Sum_probs=53.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceE-e--C---hhHHHh-HHHhhC--CCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-F--T---EEELRN-ISRDAS--IPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v-~--~---~~~~~~-~~~~~~--~~~   80 (202)
                      .|.++||+|+++++|.++++.+...|++|+.+.++.+...+..+.++..+.... +  |   +++... +.+...  .++
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g~   83 (260)
T 2qq5_A            4 NGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDREQQGR   83 (260)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence            468999999999999999999999999999988876543333333444443321 1  3   333444 333211  257


Q ss_pred             CeEEEecCC
Q psy2961          81 PKLALNCVG   89 (202)
Q Consensus        81 ~d~vid~~g   89 (202)
                      +|++|+++|
T Consensus        84 id~lvnnAg   92 (260)
T 2qq5_A           84 LDVLVNNAY   92 (260)
T ss_dssp             CCEEEECCC
T ss_pred             ceEEEECCc
Confidence            999999984

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=98.19  E-value=1e-05  Score=60.76  Aligned_cols=79  Identities=14%  Similarity=0.181  Sum_probs=55.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceE--e--C---hhHHHh-H---HHhhCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV--F--T---EEELRN-I---SRDASI   78 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v--~--~---~~~~~~-~---~~~~~~   78 (202)
                      .|.++||+|+++++|.++++.+...|++|+.+.++.+...+..+.+++.+...+  +  |   .++... +   .+..  
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~--  117 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDAF--  117 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHHHH--
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHHHc--
Confidence            578999999999999999999999999999999888765444455555542211  1  2   333333 2   2223  


Q ss_pred             CCCeEEEecCCC
Q psy2961          79 PKPKLALNCVGG   90 (202)
Q Consensus        79 ~~~d~vid~~g~   90 (202)
                      +++|++|+++|.
T Consensus       118 g~iD~lvnnAg~  129 (293)
T 3rih_A          118 GALDVVCANAGI  129 (293)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            579999999873

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=98.19  E-value=8.5e-06  Score=63.75  Aligned_cols=91  Identities=12%  Similarity=0.141  Sum_probs=67.1

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEec
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNC   87 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~   87 (202)
                      .-.|++|+|.|.| .+|..+++.++.+|++|+++..++.    +...+...|... .+   +.+   ..  ...|+++.|
T Consensus       217 ~L~GktV~ViG~G-~IGk~vA~~Lra~Ga~Viv~D~dp~----ra~~A~~~G~~v-~~---Lee---al--~~ADIVi~a  282 (435)
T 3gvp_A          217 MFGGKQVVVCGYG-EVGKGCCAALKAMGSIVYVTEIDPI----CALQACMDGFRL-VK---LNE---VI--RQVDIVITC  282 (435)
T ss_dssp             CCTTCEEEEECCS-HHHHHHHHHHHHTTCEEEEECSCHH----HHHHHHHTTCEE-CC---HHH---HT--TTCSEEEEC
T ss_pred             eecCCEEEEEeeC-HHHHHHHHHHHHCCCEEEEEeCChh----hhHHHHHcCCEe-cc---HHH---HH--hcCCEEEEC
Confidence            4589999999999 9999999999999999887665543    334444556432 22   222   22  467999999


Q ss_pred             CCCchHH--HHHHhcccCcEEEEEecc
Q psy2961          88 VGGNSAT--NLLRTLVSKGVMVTYGGM  112 (202)
Q Consensus        88 ~g~~~~~--~~~~~l~~~G~~v~~g~~  112 (202)
                      .|.....  ..+..|++++.++.+|..
T Consensus       283 tgt~~lI~~e~l~~MK~gailINvgrg  309 (435)
T 3gvp_A          283 TGNKNVVTREHLDRMKNSCIVCNMGHS  309 (435)
T ss_dssp             SSCSCSBCHHHHHHSCTTEEEEECSST
T ss_pred             CCCcccCCHHHHHhcCCCcEEEEecCC
Confidence            8866543  478999999999998743

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=98.19  E-value=9.5e-06  Score=60.17  Aligned_cols=80  Identities=14%  Similarity=0.211  Sum_probs=54.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCce--E-eC---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY--V-FT---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~--v-~~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .++++||+|+++++|.++++.+...|++|+.+.++++..++..+.+++.+...  + .|   .++... +.+... -+++
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i  106 (270)
T 3ftp_A           27 DKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKEFGAL  106 (270)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHHHcCCC
Confidence            57899999999999999999999999999999887765433344444444332  1 13   333333 322211 1479


Q ss_pred             eEEEecCC
Q psy2961          82 KLALNCVG   89 (202)
Q Consensus        82 d~vid~~g   89 (202)
                      |++|+++|
T Consensus       107 D~lvnnAg  114 (270)
T 3ftp_A          107 NVLVNNAG  114 (270)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999997

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=98.19  E-value=1.3e-05  Score=58.55  Aligned_cols=81  Identities=17%  Similarity=0.245  Sum_probs=53.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceE-e--C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-F--T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v-~--~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .|.++||+|+++++|.++++.+...|++|+.+.++.+..++..+.+++.+.... +  |   +++... +.+... -+++
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i   85 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEALGGL   85 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            468999999999999999999999999999988876643333334444454321 1  3   333333 322211 1479


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|+++|.
T Consensus        86 d~lv~nAg~   94 (247)
T 2jah_A           86 DILVNNAGI   94 (247)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999998873

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=98.19  E-value=2.9e-05  Score=57.25  Aligned_cols=78  Identities=15%  Similarity=0.229  Sum_probs=51.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCce--E-eC---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY--V-FT---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~--v-~~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .+.++||+|+++++|.++++.+...|++|+.+.++++.   ..+..++++...  + .|   .++... +.+... -+++
T Consensus         5 ~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~---~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i   81 (263)
T 2a4k_A            5 SGKTILVTGAASGIGRAALDLFAREGASLVAVDREERL---LAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRL   81 (263)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH---HHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHH---HHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            46899999999999999999999999999998887653   122334443221  1 13   333333 322211 1479


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|+++|.
T Consensus        82 D~lvnnAg~   90 (263)
T 2a4k_A           82 HGVAHFAGV   90 (263)
T ss_dssp             CEEEEGGGG
T ss_pred             cEEEECCCC
Confidence            999998873

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=98.18  E-value=1.2e-05  Score=59.24  Aligned_cols=78  Identities=14%  Similarity=0.157  Sum_probs=54.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-C---hhHHHh-HHHhhC-CCCCeE
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-T---EEELRN-ISRDAS-IPKPKL   83 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~---~~~~~~-~~~~~~-~~~~d~   83 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.++++.   ..+.+++.+...+. |   .++... +.+... .+++|+
T Consensus        26 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~---~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~  102 (260)
T 3gem_A           26 SSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHA---SVTELRQAGAVALYGDFSCETGIMAFIDLLKTQTSSLRA  102 (260)
T ss_dssp             -CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCH---HHHHHHHHTCEEEECCTTSHHHHHHHHHHHHHHCSCCSE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHH---HHHHHHhcCCeEEECCCCCHHHHHHHHHHHHHhcCCCCE
Confidence            46889999999999999999999999999999988764   24455556654433 3   333333 332211 247999


Q ss_pred             EEecCCC
Q psy2961          84 ALNCVGG   90 (202)
Q Consensus        84 vid~~g~   90 (202)
                      +|.++|.
T Consensus       103 lv~nAg~  109 (260)
T 3gem_A          103 VVHNASE  109 (260)
T ss_dssp             EEECCCC
T ss_pred             EEECCCc
Confidence            9999883

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=98.18  E-value=3.4e-05  Score=55.99  Aligned_cols=80  Identities=15%  Similarity=0.245  Sum_probs=50.4

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEE-ecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCCC
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINI-VRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~-~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~~   81 (202)
                      |.+|||+|++|++|..+++.+...|++|+.+ .++++..++..+.+++.+.....   |   ++++.. +.+... -+++
T Consensus         1 ~k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   80 (244)
T 1edo_A            1 SPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTI   80 (244)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence            5789999999999999999999999999885 45544322222333444433211   3   233333 332211 1479


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.++|.
T Consensus        81 d~li~~Ag~   89 (244)
T 1edo_A           81 DVVVNNAGI   89 (244)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999873

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=98.17  E-value=2.5e-05  Score=57.66  Aligned_cols=81  Identities=17%  Similarity=0.235  Sum_probs=51.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhc--CCc--eE-eC---hhHHHh-HHHhhC-CC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL--GAD--YV-FT---EEELRN-ISRDAS-IP   79 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~l--g~~--~v-~~---~~~~~~-~~~~~~-~~   79 (202)
                      .+.++||+|++|++|.++++.+...|++|+.+.++.+...+..+.+.+.  +..  .+ .|   ++++.. +..... -+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (267)
T 2gdz_A            6 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG   85 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence            5789999999999999999999999999999887765322212222221  111  11 13   333333 322211 14


Q ss_pred             CCeEEEecCCC
Q psy2961          80 KPKLALNCVGG   90 (202)
Q Consensus        80 ~~d~vid~~g~   90 (202)
                      ++|++|+++|.
T Consensus        86 ~id~lv~~Ag~   96 (267)
T 2gdz_A           86 RLDILVNNAGV   96 (267)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999984

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=98.17  E-value=1.2e-05  Score=59.12  Aligned_cols=80  Identities=9%  Similarity=0.173  Sum_probs=52.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEE-ecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINI-VRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~-~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~   80 (202)
                      .|.++||+|+++++|.++++.+...|++|+.+ .++.+...+..+.+++.+.....   |   .++... +.+... .++
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   82 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETFGR   82 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            57899999999999999999999999999887 45544322233444445544222   2   333333 222211 147


Q ss_pred             CeEEEecCC
Q psy2961          81 PKLALNCVG   89 (202)
Q Consensus        81 ~d~vid~~g   89 (202)
                      +|++|.++|
T Consensus        83 id~lv~nAg   91 (258)
T 3oid_A           83 LDVFVNNAA   91 (258)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999997

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=98.17  E-value=1.6e-05  Score=58.52  Aligned_cols=80  Identities=15%  Similarity=0.159  Sum_probs=55.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.++++.. +..+.+.+.+.....   |   +.+... +.+... -+++
T Consensus         6 ~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~-~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~G~i   84 (258)
T 4gkb_A            6 QDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDG-AFLDALAQRQPRATYLPVELQDDAQCRDAVAQTIATFGRL   84 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCH-HHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccH-HHHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence            579999999999999999999999999999988877652 233444455543222   2   333333 222211 1579


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++++++|-
T Consensus        85 DiLVNnAGi   93 (258)
T 4gkb_A           85 DGLVNNAGV   93 (258)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999983

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=98.16  E-value=8.4e-06  Score=60.79  Aligned_cols=80  Identities=20%  Similarity=0.259  Sum_probs=53.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.++.+...+..+.+++.+.....   |   +++... +.+... -+++
T Consensus         7 ~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   86 (280)
T 3tox_A            7 EGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFGGL   86 (280)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            5789999999999999999999999999988887766433333333333433222   2   233333 222211 1479


Q ss_pred             eEEEecCC
Q psy2961          82 KLALNCVG   89 (202)
Q Consensus        82 d~vid~~g   89 (202)
                      |++|+++|
T Consensus        87 D~lvnnAg   94 (280)
T 3tox_A           87 DTAFNNAG   94 (280)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999987

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=98.16  E-value=1.4e-05  Score=60.70  Aligned_cols=80  Identities=18%  Similarity=0.221  Sum_probs=55.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCC--ce-Ee--C---hhHHHh-HHHhhC-CC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA--DY-VF--T---EEELRN-ISRDAS-IP   79 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~--~~-v~--~---~~~~~~-~~~~~~-~~   79 (202)
                      .|.+|||+|++|++|..+++.+...|++|+.++++.+..++..+.++..+.  .. ++  |   ..++.. +..... .+
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   86 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARFG   86 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhCC
Confidence            478999999999999999999999999999999887754444444444443  21 11  3   333333 332211 25


Q ss_pred             CCeEEEecCC
Q psy2961          80 KPKLALNCVG   89 (202)
Q Consensus        80 ~~d~vid~~g   89 (202)
                      ++|++|.++|
T Consensus        87 ~id~lv~nAg   96 (319)
T 3ioy_A           87 PVSILCNNAG   96 (319)
T ss_dssp             CEEEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7999999998

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=98.15  E-value=2.2e-05  Score=57.61  Aligned_cols=80  Identities=14%  Similarity=0.160  Sum_probs=53.0

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceE-e--C---hhHHHh-HHHhhC-CCCCe
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-F--T---EEELRN-ISRDAS-IPKPK   82 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v-~--~---~~~~~~-~~~~~~-~~~~d   82 (202)
                      +.++||+|+++++|.++++.+...|++|+.+.++++..++..+.++..+.... +  |   +++... +.+... -+++|
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id   81 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFD   81 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence            57899999999999999999999999999988876543333333444453321 1  3   333333 332211 14799


Q ss_pred             EEEecCCC
Q psy2961          83 LALNCVGG   90 (202)
Q Consensus        83 ~vid~~g~   90 (202)
                      ++|+++|.
T Consensus        82 ~lv~nAg~   89 (256)
T 1geg_A           82 VIVNNAGV   89 (256)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999873

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=98.15  E-value=1.8e-05  Score=58.70  Aligned_cols=80  Identities=18%  Similarity=0.192  Sum_probs=51.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhCCCCCe
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDASIPKPK   82 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~~~~~d   82 (202)
                      .|.++||+|+++++|.++++.+...|++|+.+.+. +...+..+.+.+.+.....   |   .++... .......+++|
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~g~iD  108 (273)
T 3uf0_A           30 AGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRT-DGVKEVADEIADGGGSAEAVVADLADLEGAANVAEELAATRRVD  108 (273)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS-THHHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCH-HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHhcCCCc
Confidence            47899999999999999999999999999888754 3323333444444443221   2   223222 11111125799


Q ss_pred             EEEecCCC
Q psy2961          83 LALNCVGG   90 (202)
Q Consensus        83 ~vid~~g~   90 (202)
                      ++|.++|.
T Consensus       109 ~lv~nAg~  116 (273)
T 3uf0_A          109 VLVNNAGI  116 (273)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999874

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=98.15  E-value=1.5e-05  Score=59.39  Aligned_cols=81  Identities=21%  Similarity=0.270  Sum_probs=55.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCC---ceE-e--C---hhHHHh-HHHhhC-C
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA---DYV-F--T---EEELRN-ISRDAS-I   78 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~---~~v-~--~---~~~~~~-~~~~~~-~   78 (202)
                      .|.++||+|+++++|.++++.+...|++|+.+.++++...+..+.+++.+.   ... +  |   +++... +.+... .
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   89 (281)
T 3svt_A           10 QDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAWH   89 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            578999999999999999999999999999988877654444455555554   211 1  2   333333 322211 1


Q ss_pred             CCCeEEEecCCC
Q psy2961          79 PKPKLALNCVGG   90 (202)
Q Consensus        79 ~~~d~vid~~g~   90 (202)
                      +++|++|.++|.
T Consensus        90 g~id~lv~nAg~  101 (281)
T 3svt_A           90 GRLHGVVHCAGG  101 (281)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            479999999984

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=98.15  E-value=3.4e-05  Score=57.21  Aligned_cols=80  Identities=15%  Similarity=0.184  Sum_probs=52.6

Q ss_pred             CCCEEEEeCCC--cHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHh-cCCceEe--C---hhHHHh-HHHhhC-CC
Q psy2961          10 PGDVVIQNGAN--SACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS-LGADYVF--T---EEELRN-ISRDAS-IP   79 (202)
Q Consensus        10 ~g~~VlI~g~~--~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~-lg~~~v~--~---~~~~~~-~~~~~~-~~   79 (202)
                      .|.++||+|++  +++|.++++.+...|++|+.+.++++ ..+..+.+.+ .+...++  |   .++... +.+... .+
T Consensus         5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   83 (275)
T 2pd4_A            5 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-LEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLG   83 (275)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-THHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            47899999998  99999999999999999999888765 2233444433 3422222  3   233333 332211 24


Q ss_pred             CCeEEEecCCC
Q psy2961          80 KPKLALNCVGG   90 (202)
Q Consensus        80 ~~d~vid~~g~   90 (202)
                      ++|++|+++|.
T Consensus        84 ~id~lv~nAg~   94 (275)
T 2pd4_A           84 SLDFIVHSVAF   94 (275)
T ss_dssp             CEEEEEECCCC
T ss_pred             CCCEEEECCcc
Confidence            79999999873

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=98.14  E-value=8.2e-06  Score=60.87  Aligned_cols=79  Identities=14%  Similarity=0.255  Sum_probs=52.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCce--Ee--C---hhHHHh-H---HHhhCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY--VF--T---EEELRN-I---SRDASI   78 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~--v~--~---~~~~~~-~---~~~~~~   78 (202)
                      .|.++||+|+++++|.++++.+...|++|+.+.++++..++..+.+.+.+...  .+  |   +++... +   .+..  
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~--  109 (281)
T 4dry_A           32 EGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRAEF--  109 (281)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHH--
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHHHc--
Confidence            57899999999999999999999999999999888765433333443333222  22  3   333333 2   2223  


Q ss_pred             CCCeEEEecCCC
Q psy2961          79 PKPKLALNCVGG   90 (202)
Q Consensus        79 ~~~d~vid~~g~   90 (202)
                      +++|++|+++|.
T Consensus       110 g~iD~lvnnAG~  121 (281)
T 4dry_A          110 ARLDLLVNNAGS  121 (281)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            579999999874

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=98.14  E-value=1.7e-05  Score=58.26  Aligned_cols=81  Identities=10%  Similarity=0.163  Sum_probs=53.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceE---eC---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FT---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v---~~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .|.++||+|+++++|.++++.+...|++|+.+.++++..++..+.+++.+....   .|   .++... +.+... .+++
T Consensus        13 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   92 (260)
T 2zat_A           13 ENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLHGGV   92 (260)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            478999999999999999999999999999988876643333334444443321   12   233333 322111 1479


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|+++|.
T Consensus        93 D~lv~~Ag~  101 (260)
T 2zat_A           93 DILVSNAAV  101 (260)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999873

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.14  E-value=3.2e-05  Score=53.78  Aligned_cols=94  Identities=16%  Similarity=0.124  Sum_probs=65.0

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHC-CCcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCCCeEEEecC
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNCV   88 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~-g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~vid~~   88 (202)
                      +++|+|+|+| .+|..+++.++.. |.+|+++.++++    +.+.+++.|...+. |..+...+.+.++-.++|+||.++
T Consensus        39 ~~~v~IiG~G-~~G~~~a~~L~~~~g~~V~vid~~~~----~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~  113 (183)
T 3c85_A           39 HAQVLILGMG-RIGTGAYDELRARYGKISLGIEIREE----AAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAM  113 (183)
T ss_dssp             TCSEEEECCS-HHHHHHHHHHHHHHCSCEEEEESCHH----HHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECC
T ss_pred             CCcEEEECCC-HHHHHHHHHHHhccCCeEEEEECCHH----HHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeC
Confidence            6789999986 9999999999998 999988887765    56777778877655 333222233331335799999999


Q ss_pred             CCchHHH-H---HHhcccCcEEEEE
Q psy2961          89 GGNSATN-L---LRTLVSKGVMVTY  109 (202)
Q Consensus        89 g~~~~~~-~---~~~l~~~G~~v~~  109 (202)
                      +...... .   ++.+.+..+++..
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~ii~~  138 (183)
T 3c85_A          114 PHHQGNQTALEQLQRRNYKGQIAAI  138 (183)
T ss_dssp             SSHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             CChHHHHHHHHHHHHHCCCCEEEEE
Confidence            8765433 2   3444555566654

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=98.13  E-value=1.8e-05  Score=58.26  Aligned_cols=81  Identities=19%  Similarity=0.215  Sum_probs=53.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .+.++||+|+++++|.++++.+...|++|+.+.++.+..++..+.+++.+.....   |   +++... +.+... -+++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   85 (262)
T 1zem_A            6 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGKI   85 (262)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence            4789999999999999999999999999998888765433333334444543221   3   333333 222211 1479


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|+++|.
T Consensus        86 d~lv~nAg~   94 (262)
T 1zem_A           86 DFLFNNAGY   94 (262)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999998873

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=98.12  E-value=1.4e-05  Score=59.11  Aligned_cols=79  Identities=15%  Similarity=0.202  Sum_probs=54.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHh-cCCceEe---C---hhHHHh----HHHhhCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS-LGADYVF---T---EEELRN----ISRDASI   78 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~-lg~~~v~---~---~~~~~~----~~~~~~~   78 (202)
                      .|.++||+|+++++|.++++.+...|++|+.+.++.+..++..+.+++ .+.....   |   .++...    +.+..  
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~--   96 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAEAF--   96 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHHHH--
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHc--
Confidence            578999999999999999999999999999988877654333334433 3443221   2   333333    32333  


Q ss_pred             CCCeEEEecCCC
Q psy2961          79 PKPKLALNCVGG   90 (202)
Q Consensus        79 ~~~d~vid~~g~   90 (202)
                      +++|++|+++|.
T Consensus        97 g~id~lv~nAg~  108 (266)
T 4egf_A           97 GGLDVLVNNAGI  108 (266)
T ss_dssp             TSCSEEEEECCC
T ss_pred             CCCCEEEECCCc
Confidence            479999999873

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=98.12  E-value=1.9e-05  Score=58.48  Aligned_cols=81  Identities=14%  Similarity=0.158  Sum_probs=52.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc-cHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD-DIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~-~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~   80 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.++.. ..++..+.+++.+.....   |   .++... +.+... -++
T Consensus        27 ~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~g~  106 (269)
T 4dmm_A           27 TDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIERWGR  106 (269)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999999999999999988887443 222223344445543222   2   333333 322211 147


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|++|+++|.
T Consensus       107 id~lv~nAg~  116 (269)
T 4dmm_A          107 LDVLVNNAGI  116 (269)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999874

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=98.12  E-value=1.8e-05  Score=58.37  Aligned_cols=81  Identities=16%  Similarity=0.209  Sum_probs=53.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC--CCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS--IPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~--~~~   80 (202)
                      .+.+|||+|++|++|..+++.+...|++|+.+.++++...+..+.+++.+.....   |   .++... +.+...  +.+
T Consensus        13 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   92 (266)
T 1xq1_A           13 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGGK   92 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            5689999999999999999999999999999888765433333334444443211   2   233333 322211  147


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|++|.++|.
T Consensus        93 id~li~~Ag~  102 (266)
T 1xq1_A           93 LDILINNLGA  102 (266)
T ss_dssp             CSEEEEECCC
T ss_pred             CcEEEECCCC
Confidence            9999999874

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=98.12  E-value=2e-05  Score=58.27  Aligned_cols=81  Identities=19%  Similarity=0.248  Sum_probs=53.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHH-HhcCCceEe---C---hhHHHh-HHHhhC-CCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGADYVF---T---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~v~---~---~~~~~~-~~~~~~-~~~   80 (202)
                      .+.++||+|+++++|.++++.+...|++|+.+.++.+...+..+.+ +..+.....   |   ++++.. +.+... -++
T Consensus        20 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   99 (267)
T 1vl8_A           20 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFGK   99 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999999999999999999888765432222233 333543221   3   333333 322211 147


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|++|+++|.
T Consensus       100 iD~lvnnAg~  109 (267)
T 1vl8_A          100 LDTVVNAAGI  109 (267)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCc
Confidence            9999999873

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=98.11  E-value=1.5e-05  Score=59.67  Aligned_cols=75  Identities=17%  Similarity=0.192  Sum_probs=52.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhCCCCCe
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDASIPKPK   82 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~~~~~d   82 (202)
                      .|.++||+|+++++|.++++.+...|++|+.++++.+.   ..+..++++....+   |   .++... +.+.   .++|
T Consensus        15 ~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~---~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~---~~iD   88 (291)
T 3rd5_A           15 AQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRK---GEAAARTMAGQVEVRELDLQDLSSVRRFADGV---SGAD   88 (291)
T ss_dssp             TTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHH---HHHHHTTSSSEEEEEECCTTCHHHHHHHHHTC---CCEE
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHH---HHHHHHHhcCCeeEEEcCCCCHHHHHHHHHhc---CCCC
Confidence            57899999999999999999999999999999887753   22333445433221   3   233333 3322   4789


Q ss_pred             EEEecCCC
Q psy2961          83 LALNCVGG   90 (202)
Q Consensus        83 ~vid~~g~   90 (202)
                      ++|.++|.
T Consensus        89 ~lv~nAg~   96 (291)
T 3rd5_A           89 VLINNAGI   96 (291)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCcC
Confidence            99999873

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=98.11  E-value=1.4e-05  Score=58.43  Aligned_cols=76  Identities=13%  Similarity=0.108  Sum_probs=51.2

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceE-e--C---hhHHHh-HHHhhC-CCCCe
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-F--T---EEELRN-ISRDAS-IPKPK   82 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v-~--~---~~~~~~-~~~~~~-~~~~d   82 (202)
                      +++|||+|+++++|.++++.+...|++|+.+.++++    +.+.+.+.+.... +  |   +++... +.+... -+++|
T Consensus         2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~----~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~iD   77 (247)
T 3ged_A            2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEK----RSADFAKERPNLFYFHGDVADPLTLKKFVEYAMEKLQRID   77 (247)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCC
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHhcCCEEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            378999999999999999999999999988877654    3444433333322 1  2   333333 322211 15799


Q ss_pred             EEEecCCC
Q psy2961          83 LALNCVGG   90 (202)
Q Consensus        83 ~vid~~g~   90 (202)
                      ++++++|.
T Consensus        78 iLVNNAG~   85 (247)
T 3ged_A           78 VLVNNACR   85 (247)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999873

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=98.11  E-value=1.6e-05  Score=58.14  Aligned_cols=76  Identities=14%  Similarity=0.111  Sum_probs=52.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-H---HHhhCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-I---SRDASIP   79 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~---~~~~~~~   79 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.++.+.   ..+...+++.....   |   .++... +   .+..  +
T Consensus         5 ~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~---~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~--g   79 (247)
T 3rwb_A            5 AGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEG---AKAAAASIGKKARAIAADISDPGSVKALFAEIQALT--G   79 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHH---HHHHHHHHCTTEEECCCCTTCHHHHHHHHHHHHHHH--S
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHH---HHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHC--C
Confidence            57899999999999999999999999999988877653   22333445543222   2   333333 2   2222  4


Q ss_pred             CCeEEEecCCC
Q psy2961          80 KPKLALNCVGG   90 (202)
Q Consensus        80 ~~d~vid~~g~   90 (202)
                      ++|++|+++|.
T Consensus        80 ~id~lv~nAg~   90 (247)
T 3rwb_A           80 GIDILVNNASI   90 (247)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999983

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=98.11  E-value=1.1e-05  Score=59.16  Aligned_cols=99  Identities=21%  Similarity=0.214  Sum_probs=64.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhC-CCCCeEEEec
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDAS-IPKPKLALNC   87 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~-~~~~d~vid~   87 (202)
                      .+.+|||+|+++++|.++++.+...|++|+.+.++.+.    .+. ..+-.+ +.+.++... +.+... .+++|++|.+
T Consensus        21 m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~----~~~-~~~~~d-~~d~~~v~~~~~~~~~~~g~iD~li~~   94 (251)
T 3orf_A           21 MSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENP----NAD-HSFTIK-DSGEEEIKSVIEKINSKSIKVDTFVCA   94 (251)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCT----TSS-EEEECS-CSSHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccc----ccc-cceEEE-eCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            46899999999999999999999999999998887753    110 111112 224445444 444322 2479999999


Q ss_pred             CCCc-------h--------------------HHHHHHhcccCcEEEEEeccCC
Q psy2961          88 VGGN-------S--------------------ATNLLRTLVSKGVMVTYGGMSR  114 (202)
Q Consensus        88 ~g~~-------~--------------------~~~~~~~l~~~G~~v~~g~~~~  114 (202)
                      +|..       .                    ...++..++.+|++|.++....
T Consensus        95 Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~  148 (251)
T 3orf_A           95 AGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAA  148 (251)
T ss_dssp             CCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGG
T ss_pred             CccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhh
Confidence            9831       0                    0112445667789999886543

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=98.10  E-value=1.9e-05  Score=57.86  Aligned_cols=81  Identities=14%  Similarity=0.180  Sum_probs=53.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhc--C-Cc-eEe--C---hhHHHh-HHHhhC-C
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL--G-AD-YVF--T---EEELRN-ISRDAS-I   78 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~l--g-~~-~v~--~---~~~~~~-~~~~~~-~   78 (202)
                      .+.++||+|+++++|.++++.+...|++|+.+.++.+..++..+.+++.  + .. .++  |   .++... +.+... .
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKY   85 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHhc
Confidence            5789999999999999999998889999999988876543333444333  2 11 111  3   233333 322211 1


Q ss_pred             CCCeEEEecCCC
Q psy2961          79 PKPKLALNCVGG   90 (202)
Q Consensus        79 ~~~d~vid~~g~   90 (202)
                      +++|++|+++|.
T Consensus        86 g~iD~lvnnAg~   97 (250)
T 3nyw_A           86 GAVDILVNAAAM   97 (250)
T ss_dssp             CCEEEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            579999999984

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=98.10  E-value=2.4e-05  Score=57.36  Aligned_cols=80  Identities=18%  Similarity=0.221  Sum_probs=53.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceE-e--C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-F--T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v-~--~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .+.+|||+|++|++|..+++.+...|++|+.+.++.+...+..+.+++.+.... +  |   ++++.. +.+... .+++
T Consensus        12 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   91 (260)
T 3awd_A           12 DNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQEGRV   91 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            478999999999999999999999999999988876543333344444453321 1  2   233333 332211 1479


Q ss_pred             eEEEecCC
Q psy2961          82 KLALNCVG   89 (202)
Q Consensus        82 d~vid~~g   89 (202)
                      |++|.++|
T Consensus        92 d~vi~~Ag   99 (260)
T 3awd_A           92 DILVACAG   99 (260)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999887

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=98.10  E-value=1.7e-05  Score=58.10  Aligned_cols=76  Identities=9%  Similarity=-0.006  Sum_probs=52.4

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceE-eChhHHHh----HHHhhCCCCCeEEEe
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRN----ISRDASIPKPKLALN   86 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v-~~~~~~~~----~~~~~~~~~~d~vid   86 (202)
                      +++||+|+++++|.++++.+...|++|+.+.++++..++..+ ++..+.+.. ++.++...    +.+..  +++|++|+
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~-l~~~~~~~~~~d~~~v~~~~~~~~~~~--g~iD~lv~   78 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEA-FAETYPQLKPMSEQEPAELIEAVTSAY--GQVDVLVS   78 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHH-HHHHCTTSEECCCCSHHHHHHHHHHHH--SCCCEEEE
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-HHhcCCcEEEECHHHHHHHHHHHHHHh--CCCCEEEE
Confidence            479999999999999999999999999998887765333223 444454322 24443333    33333  47999999


Q ss_pred             cCCC
Q psy2961          87 CVGG   90 (202)
Q Consensus        87 ~~g~   90 (202)
                      ++|.
T Consensus        79 nAg~   82 (254)
T 1zmt_A           79 NDIF   82 (254)
T ss_dssp             ECCC
T ss_pred             CCCc
Confidence            9874

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=98.10  E-value=3e-05  Score=57.99  Aligned_cols=80  Identities=18%  Similarity=0.210  Sum_probs=51.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC---cEEEEecCcccHHHHHHHHHhc--CCceEe---C---hhHHHh-HHHhhC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGL---KTINIVRNRDDIDKLKSYLKSL--GADYVF---T---EEELRN-ISRDAS   77 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~---~vi~~~~~~~~~~~~~~~~~~l--g~~~v~---~---~~~~~~-~~~~~~   77 (202)
                      .|.++||+|+++++|.++++.+...|+   +|+.+.++.+..++..+.+++.  +.....   |   .++... +.+...
T Consensus        32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  111 (287)
T 3rku_A           32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQ  111 (287)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSCG
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            478999999999999999888777776   8888877766433333333332  322211   2   334443 333211


Q ss_pred             -CCCCeEEEecCC
Q psy2961          78 -IPKPKLALNCVG   89 (202)
Q Consensus        78 -~~~~d~vid~~g   89 (202)
                       -+++|++|+++|
T Consensus       112 ~~g~iD~lVnnAG  124 (287)
T 3rku_A          112 EFKDIDILVNNAG  124 (287)
T ss_dssp             GGCSCCEEEECCC
T ss_pred             hcCCCCEEEECCC
Confidence             147999999987

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=98.10  E-value=3.1e-05  Score=56.65  Aligned_cols=82  Identities=16%  Similarity=0.161  Sum_probs=51.7

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc-cHHHHHHHHHhcCCceEe---C---hhHHHh-H---HHhh-
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD-DIDKLKSYLKSLGADYVF---T---EEELRN-I---SRDA-   76 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~-~~~~~~~~~~~lg~~~v~---~---~~~~~~-~---~~~~-   76 (202)
                      -.|+++||+|+++++|.++++.+...|++|+.++++.. ...+..+.+++.+.....   |   .++... +   .+.. 
T Consensus         5 l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   84 (255)
T 3icc_A            5 LKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQ   84 (255)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCSHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhcCCceEEEecCcCCHHHHHHHHHHHHHHhc
Confidence            35789999999999999999999999999988755443 322223344444443221   2   222222 2   2211 


Q ss_pred             ---CCCCCeEEEecCCC
Q psy2961          77 ---SIPKPKLALNCVGG   90 (202)
Q Consensus        77 ---~~~~~d~vid~~g~   90 (202)
                         ....+|++|.++|.
T Consensus        85 ~~~~~~~id~lv~nAg~  101 (255)
T 3icc_A           85 NRTGSTKFDILINNAGI  101 (255)
T ss_dssp             HHHSSSCEEEEEECCCC
T ss_pred             ccccCCcccEEEECCCC
Confidence               12459999999874

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=98.10  E-value=2.2e-05  Score=58.14  Aligned_cols=81  Identities=22%  Similarity=0.265  Sum_probs=53.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccH-HHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDI-DKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~-~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~   80 (202)
                      .|.+|||+|+++++|.++++.+...|++|+.+.+++++. ++..+.+++.+....+   |   .++... +.+... .++
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~  107 (271)
T 4iin_A           28 TGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIVQSDGG  107 (271)
T ss_dssp             SCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            578999999999999999999999999999998855432 1122334445543222   2   233333 332211 147


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|++|.++|.
T Consensus       108 id~li~nAg~  117 (271)
T 4iin_A          108 LSYLVNNAGV  117 (271)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCc
Confidence            9999999884

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=98.10  E-value=1.6e-05  Score=58.22  Aligned_cols=82  Identities=17%  Similarity=0.284  Sum_probs=53.7

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCC---ceEe-C-----hhHHHh-HHHhhC-
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA---DYVF-T-----EEELRN-ISRDAS-   77 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~---~~v~-~-----~~~~~~-~~~~~~-   77 (202)
                      -.|+++||+|+++++|.++++.+...|++|+.+.++.+...+..+.+++.+.   ..+. |     .++... +.+... 
T Consensus        10 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   89 (252)
T 3f1l_A           10 LNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAVN   89 (252)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHHHh
Confidence            4678999999999999999999999999999988877643333333333322   1111 2     223333 222211 


Q ss_pred             CCCCeEEEecCCC
Q psy2961          78 IPKPKLALNCVGG   90 (202)
Q Consensus        78 ~~~~d~vid~~g~   90 (202)
                      .+++|++|+++|.
T Consensus        90 ~g~id~lv~nAg~  102 (252)
T 3f1l_A           90 YPRLDGVLHNAGL  102 (252)
T ss_dssp             CSCCSEEEECCCC
T ss_pred             CCCCCEEEECCcc
Confidence            2479999999874

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=98.10  E-value=2.4e-05  Score=58.86  Aligned_cols=80  Identities=16%  Similarity=0.241  Sum_probs=53.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecC------------cccHHHHHHHHHhcCCceEe---C---hhHHHh
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRN------------RDDIDKLKSYLKSLGADYVF---T---EEELRN   71 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~------------~~~~~~~~~~~~~lg~~~v~---~---~~~~~~   71 (202)
                      .|.++||+|+++++|.++++.+...|++|+.+.++            .+...+..+.+++.+.....   |   .++...
T Consensus        27 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~  106 (299)
T 3t7c_A           27 EGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDAMQA  106 (299)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHH
Confidence            57899999999999999999999999999988765            33222233444555554322   2   333333


Q ss_pred             -HHHhhC-CCCCeEEEecCC
Q psy2961          72 -ISRDAS-IPKPKLALNCVG   89 (202)
Q Consensus        72 -~~~~~~-~~~~d~vid~~g   89 (202)
                       +.+... -+++|++|+++|
T Consensus       107 ~~~~~~~~~g~iD~lv~nAg  126 (299)
T 3t7c_A          107 AVDDGVTQLGRLDIVLANAA  126 (299)
T ss_dssp             HHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHhCCCCEEEECCC
Confidence             322211 147999999887

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=98.10  E-value=2.3e-05  Score=58.22  Aligned_cols=81  Identities=15%  Similarity=0.206  Sum_probs=53.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecC------------cccHHHHHHHHHhcCCceEe---C---hhHHHh
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRN------------RDDIDKLKSYLKSLGADYVF---T---EEELRN   71 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~------------~~~~~~~~~~~~~lg~~~v~---~---~~~~~~   71 (202)
                      .|.++||+|+++++|.++++.+...|++|+.+.++            .+...+..+.++..+.....   |   +++...
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~   91 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRESLSA   91 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH
Confidence            57899999999999999999999999999988765            23222223334445543222   2   333333


Q ss_pred             -HHHhhC-CCCCeEEEecCCC
Q psy2961          72 -ISRDAS-IPKPKLALNCVGG   90 (202)
Q Consensus        72 -~~~~~~-~~~~d~vid~~g~   90 (202)
                       +.+... .+++|++|+++|.
T Consensus        92 ~~~~~~~~~g~id~lv~nAg~  112 (278)
T 3sx2_A           92 ALQAGLDELGRLDIVVANAGI  112 (278)
T ss_dssp             HHHHHHHHHCCCCEEEECCCC
T ss_pred             HHHHHHHHcCCCCEEEECCCC
Confidence             322211 1479999999984

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=98.10  E-value=2.4e-05  Score=58.21  Aligned_cols=82  Identities=16%  Similarity=0.217  Sum_probs=53.1

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEec-------------CcccHHHHHHHHHhcCCceEe---C---hhHH
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVR-------------NRDDIDKLKSYLKSLGADYVF---T---EEEL   69 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~-------------~~~~~~~~~~~~~~lg~~~v~---~---~~~~   69 (202)
                      -.|+++||+|+++++|.++++.+...|++|+.+.+             +.+..++..+.+++.+.....   |   .++.
T Consensus        13 l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v   92 (280)
T 3pgx_A           13 LQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAAL   92 (280)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHH
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHH
Confidence            35789999999999999999999999999998876             233222223334445543222   3   3333


Q ss_pred             Hh-HHHhhC-CCCCeEEEecCCC
Q psy2961          70 RN-ISRDAS-IPKPKLALNCVGG   90 (202)
Q Consensus        70 ~~-~~~~~~-~~~~d~vid~~g~   90 (202)
                      .. +.+... -+++|++|+++|.
T Consensus        93 ~~~~~~~~~~~g~id~lvnnAg~  115 (280)
T 3pgx_A           93 RELVADGMEQFGRLDVVVANAGV  115 (280)
T ss_dssp             HHHHHHHHHHHCCCCEEEECCCC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCC
Confidence            33 322211 1479999999884

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=98.10  E-value=2.3e-05  Score=57.91  Aligned_cols=80  Identities=15%  Similarity=0.171  Sum_probs=52.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhc--CCceE-e--C---hhHHHh-HHHhhC-CC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL--GADYV-F--T---EEELRN-ISRDAS-IP   79 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~l--g~~~v-~--~---~~~~~~-~~~~~~-~~   79 (202)
                      .+.++||+|+++++|.++++.+...|++|+.+.++++..++..+.+++.  +.... +  |   .++... +.+... -+
T Consensus        12 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   91 (267)
T 1iy8_A           12 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFG   91 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4789999999999999999999899999999888765433223333332  43221 1  3   233333 322211 14


Q ss_pred             CCeEEEecCC
Q psy2961          80 KPKLALNCVG   89 (202)
Q Consensus        80 ~~d~vid~~g   89 (202)
                      ++|++|+++|
T Consensus        92 ~id~lv~nAg  101 (267)
T 1iy8_A           92 RIDGFFNNAG  101 (267)
T ss_dssp             CCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7999999987

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=98.09  E-value=1.2e-05  Score=63.98  Aligned_cols=90  Identities=13%  Similarity=0.221  Sum_probs=66.0

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCV   88 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~   88 (202)
                      -.|++|+|+|+| ++|..+++.++..|++|+++..++.    +...+...|.+ +.+.++      ..  ..+|+++++.
T Consensus       263 L~GKtVvVtGaG-gIG~aiA~~Laa~GA~Viv~D~~~~----~a~~Aa~~g~d-v~~lee------~~--~~aDvVi~at  328 (488)
T 3ond_A          263 IAGKVAVVAGYG-DVGKGCAAALKQAGARVIVTEIDPI----CALQATMEGLQ-VLTLED------VV--SEADIFVTTT  328 (488)
T ss_dssp             CTTCEEEEECCS-HHHHHHHHHHHHTTCEEEEECSCHH----HHHHHHHTTCE-ECCGGG------TT--TTCSEEEECS
T ss_pred             ccCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEcCCHH----HHHHHHHhCCc-cCCHHH------HH--HhcCEEEeCC
Confidence            478999999999 9999999999999998877655443    34455555553 222221      11  4689999999


Q ss_pred             CCchHH--HHHHhcccCcEEEEEecc
Q psy2961          89 GGNSAT--NLLRTLVSKGVMVTYGGM  112 (202)
Q Consensus        89 g~~~~~--~~~~~l~~~G~~v~~g~~  112 (202)
                      |.....  ..+..|++++.++.+|..
T Consensus       329 G~~~vl~~e~l~~mk~gaiVvNaG~~  354 (488)
T 3ond_A          329 GNKDIIMLDHMKKMKNNAIVCNIGHF  354 (488)
T ss_dssp             SCSCSBCHHHHTTSCTTEEEEESSST
T ss_pred             CChhhhhHHHHHhcCCCeEEEEcCCC
Confidence            876543  378899999999998843

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=98.09  E-value=2.5e-05  Score=57.99  Aligned_cols=81  Identities=16%  Similarity=0.212  Sum_probs=52.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEec-------------CcccHHHHHHHHHhcCCceEe---C---hhHHH
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVR-------------NRDDIDKLKSYLKSLGADYVF---T---EEELR   70 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~-------------~~~~~~~~~~~~~~lg~~~v~---~---~~~~~   70 (202)
                      .|.++||+|+++++|.++++.+...|++|+.+.+             +.+...+..+.++..+.....   |   .++..
T Consensus        10 ~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~   89 (277)
T 3tsc_A           10 EGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFDRLR   89 (277)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHH
Confidence            5789999999999999999999999999998876             233222222333444443222   2   23333


Q ss_pred             h-HHHhhC-CCCCeEEEecCCC
Q psy2961          71 N-ISRDAS-IPKPKLALNCVGG   90 (202)
Q Consensus        71 ~-~~~~~~-~~~~d~vid~~g~   90 (202)
                      . +.+... -+++|++|+++|.
T Consensus        90 ~~~~~~~~~~g~id~lvnnAg~  111 (277)
T 3tsc_A           90 KVVDDGVAALGRLDIIVANAGV  111 (277)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHcCCCCEEEECCCC
Confidence            3 322211 1479999999874

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=98.09  E-value=2.3e-05  Score=57.68  Aligned_cols=81  Identities=19%  Similarity=0.272  Sum_probs=52.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhc-CCceE-e--C---hhHHHh-HHHhhC-CCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL-GADYV-F--T---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~l-g~~~v-~--~---~~~~~~-~~~~~~-~~~   80 (202)
                      .|.++||+|+++++|..+++.+...|++|+.+.++++...+..+.+++. +.... +  |   ++++.. +.+... -++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   85 (263)
T 3ai3_A            6 SGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRSSFGG   85 (263)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            4689999999999999999999999999999888765432222333322 43321 1  3   333333 322211 147


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|++|+++|.
T Consensus        86 id~lv~~Ag~   95 (263)
T 3ai3_A           86 ADILVNNAGT   95 (263)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999873

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=98.09  E-value=2.5e-05  Score=58.09  Aligned_cols=81  Identities=14%  Similarity=0.208  Sum_probs=53.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCc------------ccHHHHHHHHHhcCCceEe---C---hhHHHh
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR------------DDIDKLKSYLKSLGADYVF---T---EEELRN   71 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~------------~~~~~~~~~~~~lg~~~v~---~---~~~~~~   71 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.+++            +...+..+.+++.+.....   |   +++...
T Consensus         9 ~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~   88 (281)
T 3s55_A            9 EGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAALES   88 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH
Confidence            578999999999999999999999999999888762            2222223344455544322   2   333333


Q ss_pred             -HHHhhC-CCCCeEEEecCCC
Q psy2961          72 -ISRDAS-IPKPKLALNCVGG   90 (202)
Q Consensus        72 -~~~~~~-~~~~d~vid~~g~   90 (202)
                       +.+... .+++|++|+++|.
T Consensus        89 ~~~~~~~~~g~id~lv~nAg~  109 (281)
T 3s55_A           89 FVAEAEDTLGGIDIAITNAGI  109 (281)
T ss_dssp             HHHHHHHHHTCCCEEEECCCC
T ss_pred             HHHHHHHhcCCCCEEEECCCC
Confidence             322211 1479999999883

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=98.09  E-value=2.3e-05  Score=57.85  Aligned_cols=81  Identities=14%  Similarity=0.199  Sum_probs=53.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHh-cCCc-e-E--eC---hhHHHh-HHHhhC-CC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS-LGAD-Y-V--FT---EEELRN-ISRDAS-IP   79 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~-lg~~-~-v--~~---~~~~~~-~~~~~~-~~   79 (202)
                      .|.++||+|+++++|.++++.+...|++|+.+.++.+..++..+.+++ .+.. . .  .|   ..+... +.+... .+
T Consensus         7 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   86 (265)
T 3lf2_A            7 SEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTLG   86 (265)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            478999999999999999999999999999988877644333344443 3332 1 1  13   233333 222211 14


Q ss_pred             CCeEEEecCCC
Q psy2961          80 KPKLALNCVGG   90 (202)
Q Consensus        80 ~~d~vid~~g~   90 (202)
                      ++|++|+++|.
T Consensus        87 ~id~lvnnAg~   97 (265)
T 3lf2_A           87 CASILVNNAGQ   97 (265)
T ss_dssp             SCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999983

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=98.09  E-value=1.4e-05  Score=62.66  Aligned_cols=92  Identities=14%  Similarity=0.165  Sum_probs=67.2

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEe
Q psy2961           7 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALN   86 (202)
Q Consensus         7 ~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid   86 (202)
                      ..-.|++|+|.|.| .+|..+++.++.+|++|+++...+.    +...+...|... .+   +.+   ..  ...|+|+.
T Consensus       243 ~~L~GKTVgVIG~G-~IGr~vA~~lrafGa~Viv~d~dp~----~a~~A~~~G~~v-v~---LeE---lL--~~ADIVv~  308 (464)
T 3n58_A          243 VMMAGKVAVVCGYG-DVGKGSAQSLAGAGARVKVTEVDPI----CALQAAMDGFEV-VT---LDD---AA--STADIVVT  308 (464)
T ss_dssp             CCCTTCEEEEECCS-HHHHHHHHHHHHTTCEEEEECSSHH----HHHHHHHTTCEE-CC---HHH---HG--GGCSEEEE
T ss_pred             CcccCCEEEEECcC-HHHHHHHHHHHHCCCEEEEEeCCcc----hhhHHHhcCcee-cc---HHH---HH--hhCCEEEE
Confidence            34689999999998 8999999999999999887765443    233344456543 22   222   11  35799999


Q ss_pred             cCCCchHH--HHHHhcccCcEEEEEecc
Q psy2961          87 CVGGNSAT--NLLRTLVSKGVMVTYGGM  112 (202)
Q Consensus        87 ~~g~~~~~--~~~~~l~~~G~~v~~g~~  112 (202)
                      ++|.....  ..+..|++++.++.+|..
T Consensus       309 atgt~~lI~~e~l~~MK~GAILINvGRg  336 (464)
T 3n58_A          309 TTGNKDVITIDHMRKMKDMCIVGNIGHF  336 (464)
T ss_dssp             CCSSSSSBCHHHHHHSCTTEEEEECSSS
T ss_pred             CCCCccccCHHHHhcCCCCeEEEEcCCC
Confidence            99877553  478999999999998843

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=98.09  E-value=2.3e-05  Score=57.31  Aligned_cols=81  Identities=20%  Similarity=0.277  Sum_probs=53.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecC-cccHHHHHHHHHhcCCceE-e--C---hhHHHh-HHHhhC-CCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRN-RDDIDKLKSYLKSLGADYV-F--T---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~-~~~~~~~~~~~~~lg~~~v-~--~---~~~~~~-~~~~~~-~~~   80 (202)
                      .+.+|||+|++|++|..+++.+...|++|+.+.++ ++..++..+.++..+.... +  |   ++++.. +.+... -++
T Consensus         6 ~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   85 (258)
T 3afn_B            6 KGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVDEFVAKFGG   85 (258)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            46899999999999999999988899999999887 5543333344444443321 1  3   333333 332211 147


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|++|.++|.
T Consensus        86 id~vi~~Ag~   95 (258)
T 3afn_B           86 IDVLINNAGG   95 (258)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999874

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=98.08  E-value=3.1e-05  Score=57.49  Aligned_cols=81  Identities=14%  Similarity=0.202  Sum_probs=54.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCccc-------HHHHHHHHHhcCCceEe---C---hhHHHh-HHHh
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD-------IDKLKSYLKSLGADYVF---T---EEELRN-ISRD   75 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~-------~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~   75 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.++.+.       ..+..+.++..+.....   |   .++... +.+.
T Consensus         5 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   84 (274)
T 3e03_A            5 SGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAVAAT   84 (274)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence            47899999999999999999999999999998887642       22333444444543222   2   333333 3222


Q ss_pred             hC-CCCCeEEEecCCC
Q psy2961          76 AS-IPKPKLALNCVGG   90 (202)
Q Consensus        76 ~~-~~~~d~vid~~g~   90 (202)
                      .. .+++|++|+++|.
T Consensus        85 ~~~~g~iD~lvnnAG~  100 (274)
T 3e03_A           85 VDTFGGIDILVNNASA  100 (274)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHcCCCCEEEECCCc
Confidence            11 1479999999984

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=98.08  E-value=1.1e-05  Score=58.35  Aligned_cols=78  Identities=15%  Similarity=0.219  Sum_probs=53.0

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHH-hcCCceEe---C---hhHHHh----HHHhhCCC
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK-SLGADYVF---T---EEELRN----ISRDASIP   79 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~-~lg~~~v~---~---~~~~~~----~~~~~~~~   79 (202)
                      ++++||+|+++++|.++++.+...|++|+.+.++.+...+..+.+. ..+.....   |   +++...    +.+..  +
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~--g   79 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERF--G   79 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHHH--S
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHhc--C
Confidence            6789999999999999999999999999999888764333333332 34443222   3   233332    22222  4


Q ss_pred             CCeEEEecCCC
Q psy2961          80 KPKLALNCVGG   90 (202)
Q Consensus        80 ~~d~vid~~g~   90 (202)
                      ++|++|.++|.
T Consensus        80 ~id~li~~Ag~   90 (235)
T 3l77_A           80 DVDVVVANAGL   90 (235)
T ss_dssp             SCSEEEECCCC
T ss_pred             CCCEEEECCcc
Confidence            79999999874

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=98.08  E-value=2.4e-05  Score=58.15  Aligned_cols=80  Identities=16%  Similarity=0.219  Sum_probs=51.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe--C---hhHHHh-HHHhhC-CCCCe
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--T---EEELRN-ISRDAS-IPKPK   82 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~--~---~~~~~~-~~~~~~-~~~~d   82 (202)
                      .+.++||+|+++++|.++++.+...|++|+.+.++++...+..+.+++.+.-.++  |   +++... +.+... -+++|
T Consensus        28 ~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD  107 (276)
T 2b4q_A           28 AGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYGDCQAIPADLSSEAGARRLAQALGELSARLD  107 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTTSSCEEECCCCTTSHHHHHHHHHHHHHHCSCCS
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence            4789999999999999999999999999998887765432222333333311111  2   333333 332211 24799


Q ss_pred             EEEecCC
Q psy2961          83 LALNCVG   89 (202)
Q Consensus        83 ~vid~~g   89 (202)
                      ++|+++|
T Consensus       108 ~lvnnAg  114 (276)
T 2b4q_A          108 ILVNNAG  114 (276)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9999987

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=98.08  E-value=2.3e-05  Score=58.43  Aligned_cols=80  Identities=18%  Similarity=0.250  Sum_probs=52.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceE--e--C---hhHHHh-HHHhhC-CCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV--F--T---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v--~--~---~~~~~~-~~~~~~-~~~   80 (202)
                      .|.+|||+|++|++|..+++.+...|++|+.+.++++...+..+.+++.+...+  +  |   .++... +.+... .++
T Consensus        27 ~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~  106 (286)
T 1xu9_A           27 QGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMGG  106 (286)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHHTS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            578999999999999999999999999999998887643333344444554222  1  3   233333 222110 147


Q ss_pred             CeEEEec-CC
Q psy2961          81 PKLALNC-VG   89 (202)
Q Consensus        81 ~d~vid~-~g   89 (202)
                      +|++|.+ .|
T Consensus       107 iD~li~naag  116 (286)
T 1xu9_A          107 LDMLILNHIT  116 (286)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCcc
Confidence            9999988 44

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=98.08  E-value=2.9e-05  Score=57.11  Aligned_cols=78  Identities=9%  Similarity=0.095  Sum_probs=52.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.++.+.   ..+...+++.....   |   +++... +.+... -+++
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~---~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i   83 (259)
T 4e6p_A            7 EGKSALITGSARGIGRAFAEAYVREGATVAIADIDIER---ARQAAAEIGPAAYAVQMDVTRQDSIDAAIAATVEHAGGL   83 (259)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHH---HHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHSSSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHH---HHHHHHHhCCCceEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence            57899999999999999999999999999988877653   22333445433211   2   333333 332211 2479


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|+++|.
T Consensus        84 d~lv~~Ag~   92 (259)
T 4e6p_A           84 DILVNNAAL   92 (259)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCc
Confidence            999999984

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=98.07  E-value=2.8e-05  Score=58.04  Aligned_cols=81  Identities=15%  Similarity=0.199  Sum_probs=52.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecC----------------cccHHHHHHHHHhcCCceEe---C---hh
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRN----------------RDDIDKLKSYLKSLGADYVF---T---EE   67 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~----------------~~~~~~~~~~~~~lg~~~v~---~---~~   67 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.++                .+...+..+.++..+.....   |   ++
T Consensus        10 ~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~   89 (286)
T 3uve_A           10 EGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRDYD   89 (286)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCCCHH
Confidence            57899999999999999999999999999988765                22222222333444443222   2   33


Q ss_pred             HHHh-HHHhhC-CCCCeEEEecCCC
Q psy2961          68 ELRN-ISRDAS-IPKPKLALNCVGG   90 (202)
Q Consensus        68 ~~~~-~~~~~~-~~~~d~vid~~g~   90 (202)
                      +... +.+... .+++|++|+++|.
T Consensus        90 ~v~~~~~~~~~~~g~id~lv~nAg~  114 (286)
T 3uve_A           90 ALKAAVDSGVEQLGRLDIIVANAGI  114 (286)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHhCCCCEEEECCcc
Confidence            3333 322211 1479999999873

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=98.07  E-value=2.5e-05  Score=58.09  Aligned_cols=80  Identities=15%  Similarity=0.239  Sum_probs=52.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCC---ce-Ee--C---hhHHHh-HHHhhC-C
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA---DY-VF--T---EEELRN-ISRDAS-I   78 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~---~~-v~--~---~~~~~~-~~~~~~-~   78 (202)
                      .+.++||+|+++++|.++++.+...|++|+.+.++++..++..+.+++.+.   .. ++  |   .++... +.+... -
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (280)
T 1xkq_A            5 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQF   84 (280)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHHhc
Confidence            468999999999999999999999999999988877643333333333343   21 11  3   233333 322211 1


Q ss_pred             CCCeEEEecCC
Q psy2961          79 PKPKLALNCVG   89 (202)
Q Consensus        79 ~~~d~vid~~g   89 (202)
                      +++|++|+++|
T Consensus        85 g~iD~lv~nAg   95 (280)
T 1xkq_A           85 GKIDVLVNNAG   95 (280)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            47999999987

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=98.07  E-value=3.1e-05  Score=59.51  Aligned_cols=81  Identities=14%  Similarity=0.215  Sum_probs=55.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCccc-------HHHHHHHHHhcCCceEe---C---hhHHHh-HHHh
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD-------IDKLKSYLKSLGADYVF---T---EEELRN-ISRD   75 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~-------~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~   75 (202)
                      .|.+|||+|+++++|.++++.+...|++|+.+.++.+.       ..+..+.+++.|.....   |   .++... +.+.
T Consensus        44 ~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~  123 (346)
T 3kvo_A           44 AGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAAVEKA  123 (346)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHH
Confidence            57899999999999999999999999999999887763       22334555556654222   3   333333 3222


Q ss_pred             hC-CCCCeEEEecCCC
Q psy2961          76 AS-IPKPKLALNCVGG   90 (202)
Q Consensus        76 ~~-~~~~d~vid~~g~   90 (202)
                      .. -+++|++|+++|.
T Consensus       124 ~~~~g~iDilVnnAG~  139 (346)
T 3kvo_A          124 IKKFGGIDILVNNASA  139 (346)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHcCCCCEEEECCCC
Confidence            11 1479999999984

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=98.07  E-value=1.5e-05  Score=58.15  Aligned_cols=77  Identities=25%  Similarity=0.335  Sum_probs=52.3

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhCCCC
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDASIPK   80 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~~~~   80 (202)
                      -.++++|||+|+++++|..+++.+...|++|+.+.++.+..   .+..+++.....+   |   .++... +.+.   .+
T Consensus        11 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~---~~   84 (249)
T 3f9i_A           11 DLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKL---KSLGNALKDNYTIEVCNLANKEECSNLISKT---SN   84 (249)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHH---HHHHHHHCSSEEEEECCTTSHHHHHHHHHTC---SC
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHH---HHHHHHhccCccEEEcCCCCHHHHHHHHHhc---CC
Confidence            45789999999999999999999999999999988876532   2222344332222   2   223333 3222   47


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|++|.++|.
T Consensus        85 id~li~~Ag~   94 (249)
T 3f9i_A           85 LDILVCNAGI   94 (249)
T ss_dssp             CSEEEECCC-
T ss_pred             CCEEEECCCC
Confidence            9999999873

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=98.07  E-value=5.8e-05  Score=55.02  Aligned_cols=78  Identities=21%  Similarity=0.186  Sum_probs=50.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcC---CceEe--C---hhHHHh-HHHhhC-CC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG---ADYVF--T---EEELRN-ISRDAS-IP   79 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg---~~~v~--~---~~~~~~-~~~~~~-~~   79 (202)
                      .+.++||+|++|++|..+++.+...|++|+.+.++++..+   +..+++.   .-.++  |   .+++.. +..... -+
T Consensus         5 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~---~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (251)
T 1zk4_A            5 DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGE---KAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFG   81 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH---HHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH---HHHHHhhccCceEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            4689999999999999999999999999999887765321   2222232   11111  2   233333 222111 14


Q ss_pred             CCeEEEecCCC
Q psy2961          80 KPKLALNCVGG   90 (202)
Q Consensus        80 ~~d~vid~~g~   90 (202)
                      ++|++|.++|.
T Consensus        82 ~id~li~~Ag~   92 (251)
T 1zk4_A           82 PVSTLVNNAGI   92 (251)
T ss_dssp             SCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            69999999873

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=98.07  E-value=2.6e-05  Score=57.01  Aligned_cols=81  Identities=22%  Similarity=0.297  Sum_probs=53.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .+.+|||+|++|++|..+++.+...|++|+.+.++++..++..+.++..+.....   |   ++++.. +.+... .+++
T Consensus        10 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   89 (255)
T 1fmc_A           10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGKV   89 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence            5789999999999999999998889999999888765433233344444443211   2   233333 322111 1479


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.++|.
T Consensus        90 d~vi~~Ag~   98 (255)
T 1fmc_A           90 DILVNNAGG   98 (255)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999873

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=98.06  E-value=2.8e-05  Score=57.88  Aligned_cols=80  Identities=15%  Similarity=0.189  Sum_probs=52.8

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEec-CcccHHHHHHHHHhcCCceEe---C---hhHHHh-H---HHhhC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVR-NRDDIDKLKSYLKSLGADYVF---T---EEELRN-I---SRDAS   77 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~-~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~---~~~~~   77 (202)
                      -.+.++||+|+++++|.++++.+...|++|+.+.+ +.+...+..+.++..+.....   |   .++... +   .+.. 
T Consensus        27 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-  105 (280)
T 4da9_A           27 KARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVAEF-  105 (280)
T ss_dssp             CCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHHHH-
T ss_pred             cCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHc-
Confidence            35789999999999999999999999999988885 433322223344444543222   2   333333 2   2322 


Q ss_pred             CCCCeEEEecCCC
Q psy2961          78 IPKPKLALNCVGG   90 (202)
Q Consensus        78 ~~~~d~vid~~g~   90 (202)
                       +++|++|.++|.
T Consensus       106 -g~iD~lvnnAg~  117 (280)
T 4da9_A          106 -GRIDCLVNNAGI  117 (280)
T ss_dssp             -SCCCEEEEECC-
T ss_pred             -CCCCEEEECCCc
Confidence             479999999875

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=98.06  E-value=6.7e-06  Score=59.86  Aligned_cols=98  Identities=14%  Similarity=0.186  Sum_probs=65.5

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCc--eE-eC---hhHHHh-HHHhhCCCCC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD--YV-FT---EEELRN-ISRDASIPKP   81 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~--~v-~~---~~~~~~-~~~~~~~~~~   81 (202)
                      =.|+++||+|+++++|.++++.+...|++|+.+.++.+.    .+..  .+..  .+ .|   +++... +.+ +  +++
T Consensus         9 f~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~----~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~-~--g~i   79 (242)
T 4b79_A            9 YAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADG----VHAP--RHPRIRREELDITDSQRLQRLFEA-L--PRL   79 (242)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTS----TTSC--CCTTEEEEECCTTCHHHHHHHHHH-C--SCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHH----Hhhh--hcCCeEEEEecCCCHHHHHHHHHh-c--CCC
Confidence            369999999999999999999999999999988877653    2211  1211  11 12   344444 433 3  579


Q ss_pred             eEEEecCCCch------------------------HHHHHHhcc-cCcEEEEEeccCCC
Q psy2961          82 KLALNCVGGNS------------------------ATNLLRTLV-SKGVMVTYGGMSRE  115 (202)
Q Consensus        82 d~vid~~g~~~------------------------~~~~~~~l~-~~G~~v~~g~~~~~  115 (202)
                      |++++++|-..                        ...+++.|+ .+|++|.+++..+.
T Consensus        80 DiLVNNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~  138 (242)
T 4b79_A           80 DVLVNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASMYST  138 (242)
T ss_dssp             SEEEECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECCGGGT
T ss_pred             CEEEECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeecccc
Confidence            99999988320                        111334453 57999999876543

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=98.06  E-value=3.2e-05  Score=57.74  Aligned_cols=81  Identities=9%  Similarity=0.184  Sum_probs=54.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc-------cHHHHHHHHHhcCCceEe---C---hhHHHh-HHHh
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD-------DIDKLKSYLKSLGADYVF---T---EEELRN-ISRD   75 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~-------~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~   75 (202)
                      .+.++||+|+++++|.++++.+...|++|+.+.++.+       ...+..+.+++.+.....   |   .++... +.+.
T Consensus         8 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   87 (285)
T 3sc4_A            8 RGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAAVAKT   87 (285)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHH
Confidence            4789999999999999999999999999999988765       233334455555543222   2   333333 2222


Q ss_pred             hC-CCCCeEEEecCCC
Q psy2961          76 AS-IPKPKLALNCVGG   90 (202)
Q Consensus        76 ~~-~~~~d~vid~~g~   90 (202)
                      .. .+++|++|+++|.
T Consensus        88 ~~~~g~id~lvnnAg~  103 (285)
T 3sc4_A           88 VEQFGGIDICVNNASA  103 (285)
T ss_dssp             HHHHSCCSEEEECCCC
T ss_pred             HHHcCCCCEEEECCCC
Confidence            11 1479999999883

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=98.06  E-value=2.7e-05  Score=56.94  Aligned_cols=78  Identities=17%  Similarity=0.297  Sum_probs=51.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCc---eEeC---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD---YVFT---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~---~v~~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.++++..+   +..+.++..   ...|   .++... +.+... -+++
T Consensus         8 ~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~---~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   84 (248)
T 3op4_A            8 EGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQ---AISDYLGDNGKGMALNVTNPESIEAVLKAITDEFGGV   84 (248)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHH---HHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH---HHHHHhcccceEEEEeCCCHHHHHHHHHHHHHHcCCC
Confidence            5789999999999999999999999999999888765422   222233221   1123   333333 322211 1479


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|+++|.
T Consensus        85 D~lv~nAg~   93 (248)
T 3op4_A           85 DILVNNAGI   93 (248)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999883

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=98.06  E-value=2.4e-05  Score=57.02  Aligned_cols=80  Identities=15%  Similarity=0.254  Sum_probs=55.2

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCc--eEe--C-----hhHHHh----HHHh
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD--YVF--T-----EEELRN----ISRD   75 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~--~v~--~-----~~~~~~----~~~~   75 (202)
                      -.|.+++|+|+++++|..+++.+...|++|+.+.++++...+..+.+++.+..  .++  +     .++...    +.+.
T Consensus        12 l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~   91 (247)
T 3i1j_A           12 LKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEHE   91 (247)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHHh
Confidence            35789999999999999999999999999999988876544444555555421  111  2     222322    2222


Q ss_pred             hCCCCCeEEEecCCC
Q psy2961          76 ASIPKPKLALNCVGG   90 (202)
Q Consensus        76 ~~~~~~d~vid~~g~   90 (202)
                      .  +++|++|.++|.
T Consensus        92 ~--g~id~lv~nAg~  104 (247)
T 3i1j_A           92 F--GRLDGLLHNASI  104 (247)
T ss_dssp             H--SCCSEEEECCCC
T ss_pred             C--CCCCEEEECCcc
Confidence            2  479999999874

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=98.06  E-value=2.8e-05  Score=58.46  Aligned_cols=80  Identities=20%  Similarity=0.288  Sum_probs=53.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCC---ce-Ee--C---hhHHHh-HHHhhC-C
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA---DY-VF--T---EEELRN-ISRDAS-I   78 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~---~~-v~--~---~~~~~~-~~~~~~-~   78 (202)
                      .|.++||+|+++++|.++++.+...|++|+.+.++++..++..+.+++.+.   .. ++  |   +++... +.+... -
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  104 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKF  104 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHHhc
Confidence            478999999999999999999999999999988877643333334444443   21 11  3   233333 322111 1


Q ss_pred             CCCeEEEecCC
Q psy2961          79 PKPKLALNCVG   89 (202)
Q Consensus        79 ~~~d~vid~~g   89 (202)
                      +++|++|+++|
T Consensus       105 g~iD~lvnnAG  115 (297)
T 1xhl_A          105 GKIDILVNNAG  115 (297)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            47999999987

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=98.06  E-value=3e-05  Score=56.96  Aligned_cols=80  Identities=13%  Similarity=0.178  Sum_probs=52.0

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCccc--HHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCC
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD--IDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~--~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~   80 (202)
                      +.++||+|+++++|.++++.+...|++|+.+.++.+.  ..+..+.+++.+.....   |   .++... +.+... -++
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   81 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKLGG   81 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            5789999999999999998888889999988877653  22223334444433211   3   233333 322211 147


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|++|+++|.
T Consensus        82 iD~lv~nAg~   91 (258)
T 3a28_C           82 FDVLVNNAGI   91 (258)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999873

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=98.06  E-value=5e-05  Score=55.12  Aligned_cols=80  Identities=14%  Similarity=0.155  Sum_probs=50.1

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEE-ecCcccHHHHHHHHHhcCCce-E-e--C---hhHHHh-HHHhhC-CCC
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINI-VRNRDDIDKLKSYLKSLGADY-V-F--T---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~-~~~~~~~~~~~~~~~~lg~~~-v-~--~---~~~~~~-~~~~~~-~~~   80 (202)
                      +++|+|+|++|++|..+++.+...|++|+.+ .++++..++..+.++..+... . +  |   .++... +.+... -++
T Consensus         1 ~k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (245)
T 2ph3_A            1 MRKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVLGG   80 (245)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHhcCC
Confidence            4689999999999999999998999999888 555443222223334444331 1 2  3   233333 222111 147


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|++|.++|.
T Consensus        81 ~d~li~~Ag~   90 (245)
T 2ph3_A           81 LDTLVNNAGI   90 (245)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999873

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=98.05  E-value=2.6e-05  Score=56.89  Aligned_cols=78  Identities=13%  Similarity=0.213  Sum_probs=52.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-C---hhHHHh-HHHhhC-CCCCeE
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-T---EEELRN-ISRDAS-IPKPKL   83 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~---~~~~~~-~~~~~~-~~~~d~   83 (202)
                      .+.++||+|+++++|.++++.+...|++|+.+.++++.   ..+..++++...+. |   +++... +.+... -+++|+
T Consensus         4 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~---~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~   80 (245)
T 1uls_A            4 KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGP---LREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDG   80 (245)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH---HHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHH---HHHHHHHcCCEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            46899999999999999999999999999998877653   12233445543332 3   233333 322211 147999


Q ss_pred             EEecCCC
Q psy2961          84 ALNCVGG   90 (202)
Q Consensus        84 vid~~g~   90 (202)
                      +|+++|.
T Consensus        81 lvn~Ag~   87 (245)
T 1uls_A           81 VVHYAGI   87 (245)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999883

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=98.05  E-value=3.1e-05  Score=56.93  Aligned_cols=81  Identities=17%  Similarity=0.246  Sum_probs=52.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCccc-HHHHHHHHHhc-CCceE-e--C---hhHHHh-HHHhhC-CC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD-IDKLKSYLKSL-GADYV-F--T---EEELRN-ISRDAS-IP   79 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~-~~~~~~~~~~l-g~~~v-~--~---~~~~~~-~~~~~~-~~   79 (202)
                      .|.++||+|+++++|.++++.+...|++|+.+.++++. .++..+.+++. +.... +  |   ++++.. +.+... -+
T Consensus         3 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   82 (260)
T 1x1t_A            3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQMG   82 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            46899999999999999999999999999988877653 22222333322 43321 1  2   333333 322211 14


Q ss_pred             CCeEEEecCCC
Q psy2961          80 KPKLALNCVGG   90 (202)
Q Consensus        80 ~~d~vid~~g~   90 (202)
                      ++|++|+++|.
T Consensus        83 ~iD~lv~~Ag~   93 (260)
T 1x1t_A           83 RIDILVNNAGI   93 (260)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999873

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=98.04  E-value=4.4e-05  Score=55.45  Aligned_cols=77  Identities=18%  Similarity=0.280  Sum_probs=51.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHH-HHhc-CCceEe-ChhHHHhHHHhhC-CCCCeEEE
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSY-LKSL-GADYVF-TEEELRNISRDAS-IPKPKLAL   85 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~-~~~l-g~~~v~-~~~~~~~~~~~~~-~~~~d~vi   85 (202)
                      +|.+|||+|++|++|..+++.+...|++|+.+.++++.    .+. .+++ +...+. |-.+...+.+... .+++|++|
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi   81 (244)
T 3d3w_A            6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQAD----LDSLVRECPGIEPVCVDLGDWEATERALGSVGPVDLLV   81 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCEEE
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHcCCCCEEEEeCCCHHHHHHHHHHcCCCCEEE
Confidence            57899999999999999999999999999988877653    332 2333 333221 3222222222222 24699999


Q ss_pred             ecCCC
Q psy2961          86 NCVGG   90 (202)
Q Consensus        86 d~~g~   90 (202)
                      +++|.
T Consensus        82 ~~Ag~   86 (244)
T 3d3w_A           82 NNAAV   86 (244)
T ss_dssp             ECCCC
T ss_pred             ECCcc
Confidence            99873

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=98.04  E-value=1.8e-05  Score=56.85  Aligned_cols=88  Identities=16%  Similarity=0.105  Sum_probs=60.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhCCCCCeEEEecC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNCV   88 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~~~~~d~vid~~   88 (202)
                      .++++||+|+++++|.++++.+...|++|+.+.++.+             .+ +-++++... +.+.   +++|++|.++
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~-------------~D-~~~~~~v~~~~~~~---g~id~lv~nA   67 (223)
T 3uce_A            5 DKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTG-------------LD-ISDEKSVYHYFETI---GAFDHLIVTA   67 (223)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGT-------------CC-TTCHHHHHHHHHHH---CSEEEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcc-------------cC-CCCHHHHHHHHHHh---CCCCEEEECC
Confidence            4678999999999999999999899999888776542             11 123444444 4443   5799999988


Q ss_pred             CCch---------------------------HHHHHHhcccCcEEEEEeccCC
Q psy2961          89 GGNS---------------------------ATNLLRTLVSKGVMVTYGGMSR  114 (202)
Q Consensus        89 g~~~---------------------------~~~~~~~l~~~G~~v~~g~~~~  114 (202)
                      |...                           ...+++.++++|+++.++....
T Consensus        68 g~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~  120 (223)
T 3uce_A           68 GSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGMLS  120 (223)
T ss_dssp             CCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGGG
T ss_pred             CCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchhh
Confidence            7320                           0112345566899999886543

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=98.04  E-value=3.2e-05  Score=58.77  Aligned_cols=81  Identities=16%  Similarity=0.149  Sum_probs=54.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecC----------cccHHHHHHHHHhcCCceEe---C---hhHHHh-H
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRN----------RDDIDKLKSYLKSLGADYVF---T---EEELRN-I   72 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~----------~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~   72 (202)
                      .|.++||+|+++++|.++++.+...|++|+.+.++          .+...+..+.+++.+.....   |   .++... +
T Consensus        26 ~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~  105 (322)
T 3qlj_A           26 DGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQAAGLI  105 (322)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHH
Confidence            57899999999999999999999999999988765          34333334445555543322   2   233333 2


Q ss_pred             HHhhC-CCCCeEEEecCCC
Q psy2961          73 SRDAS-IPKPKLALNCVGG   90 (202)
Q Consensus        73 ~~~~~-~~~~d~vid~~g~   90 (202)
                      .+... .+++|++|.++|.
T Consensus       106 ~~~~~~~g~iD~lv~nAg~  124 (322)
T 3qlj_A          106 QTAVETFGGLDVLVNNAGI  124 (322)
T ss_dssp             HHHHHHHSCCCEEECCCCC
T ss_pred             HHHHHHcCCCCEEEECCCC
Confidence            22211 1479999999984

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=98.04  E-value=3.5e-05  Score=58.48  Aligned_cols=81  Identities=14%  Similarity=0.180  Sum_probs=52.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecC------------cccHHHHHHHHHhcCCceEe---C---hhHHHh
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRN------------RDDIDKLKSYLKSLGADYVF---T---EEELRN   71 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~------------~~~~~~~~~~~~~lg~~~v~---~---~~~~~~   71 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.++            .+...+..+.+++.+.....   |   .++...
T Consensus        45 ~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~  124 (317)
T 3oec_A           45 QGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLASLQA  124 (317)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHH
Confidence            57899999999999999999999999999988654            22222223334445544322   2   333333


Q ss_pred             -HHHhhC-CCCCeEEEecCCC
Q psy2961          72 -ISRDAS-IPKPKLALNCVGG   90 (202)
Q Consensus        72 -~~~~~~-~~~~d~vid~~g~   90 (202)
                       +.+... -+++|++|+++|.
T Consensus       125 ~~~~~~~~~g~iD~lVnnAg~  145 (317)
T 3oec_A          125 VVDEALAEFGHIDILVSNVGI  145 (317)
T ss_dssp             HHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHcCCCCEEEECCCC
Confidence             322211 1479999999873

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=98.03  E-value=2.9e-05  Score=57.79  Aligned_cols=78  Identities=14%  Similarity=0.177  Sum_probs=52.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .|.++||+|+++++|.++++.+...|++|+.+.++.+.   ..+...+++.....   |   .++... +.+... -+++
T Consensus        26 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~---~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i  102 (277)
T 4dqx_A           26 NQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDA---AVRVANEIGSKAFGVRVDVSSAKDAESMVEKTTAKWGRV  102 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHH---HHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHH---HHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            47899999999999999999999999999988877653   22333445543221   2   333333 322211 1479


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.++|.
T Consensus       103 D~lv~nAg~  111 (277)
T 4dqx_A          103 DVLVNNAGF  111 (277)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCc
Confidence            999999983

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=98.03  E-value=6.6e-05  Score=53.47  Aligned_cols=91  Identities=18%  Similarity=0.256  Sum_probs=61.2

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCCCeEEEecCCCc
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNCVGGN   91 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~vid~~g~~   91 (202)
                      +|||+|++|.+|..+++.+...|.+|++++++++    +.+.+. .+...+. |..+.. - +..  .++|+||.++|..
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~----~~~~~~-~~~~~~~~D~~d~~-~-~~~--~~~d~vi~~ag~~   72 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAG----KITQTH-KDINILQKDIFDLT-L-SDL--SDQNVVVDAYGIS   72 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSH----HHHHHC-SSSEEEECCGGGCC-H-HHH--TTCSEEEECCCSS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCch----hhhhcc-CCCeEEeccccChh-h-hhh--cCCCEEEECCcCC
Confidence            6999999999999999999999999999998875    233332 3333332 222211 1 222  5789999999864


Q ss_pred             h---------HHHHHHhccc--CcEEEEEecc
Q psy2961          92 S---------ATNLLRTLVS--KGVMVTYGGM  112 (202)
Q Consensus        92 ~---------~~~~~~~l~~--~G~~v~~g~~  112 (202)
                      .         ...+++.++.  .++++.++..
T Consensus        73 ~~~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~  104 (221)
T 3ew7_A           73 PDEAEKHVTSLDHLISVLNGTVSPRLLVVGGA  104 (221)
T ss_dssp             TTTTTSHHHHHHHHHHHHCSCCSSEEEEECCC
T ss_pred             ccccchHHHHHHHHHHHHHhcCCceEEEEecc
Confidence            2         1235666654  4788888754

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=98.03  E-value=3.5e-05  Score=57.04  Aligned_cols=76  Identities=18%  Similarity=0.193  Sum_probs=53.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HH---HhhCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-IS---RDASIP   79 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~---~~~~~~   79 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.++++..   .+..++++.....   |   .++... +.   +..  +
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~--g   84 (271)
T 3tzq_B           10 ENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDL---AGAAASVGRGAVHHVVDLTNEVSVRALIDFTIDTF--G   84 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCH---HHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHH--S
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHH---HHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHHc--C
Confidence            478999999999999999999999999999998887753   2333444433211   3   333333 22   222  4


Q ss_pred             CCeEEEecCCC
Q psy2961          80 KPKLALNCVGG   90 (202)
Q Consensus        80 ~~d~vid~~g~   90 (202)
                      ++|++|+++|.
T Consensus        85 ~id~lv~nAg~   95 (271)
T 3tzq_B           85 RLDIVDNNAAH   95 (271)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999998874

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=98.03  E-value=7.5e-05  Score=57.15  Aligned_cols=79  Identities=10%  Similarity=0.023  Sum_probs=54.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhc-------CCceEe-ChhHHHhHHHhhCCCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL-------GADYVF-TEEELRNISRDASIPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~l-------g~~~v~-~~~~~~~~~~~~~~~~~   81 (202)
                      .+.+|||+||+|.+|..+++.+...|.+|++++++.....+..+.+..+       +...+. |-.+...+.+..  .++
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~--~~~  101 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVM--KGV  101 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHT--TTC
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHh--cCC
Confidence            3679999999999999999999999999999998765433344444442       222222 323332244444  379


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |+||.+++.
T Consensus       102 d~Vih~A~~  110 (351)
T 3ruf_A          102 DHVLHQAAL  110 (351)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCcc
Confidence            999999984

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=98.03  E-value=2.6e-05  Score=57.25  Aligned_cols=81  Identities=19%  Similarity=0.286  Sum_probs=52.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEec-CcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVR-NRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~-~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~   80 (202)
                      .+.+|||+|++|++|..+++.+...|++|+.+.+ +.+...+..+.+++.+....+   |   .++... +.+... -++
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   85 (261)
T 1gee_A            6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFGK   85 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            4689999999999999999988889999999887 544322222334444443211   3   233333 322211 147


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|++|.++|.
T Consensus        86 id~li~~Ag~   95 (261)
T 1gee_A           86 LDVMINNAGL   95 (261)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999873

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=98.03  E-value=9.6e-06  Score=58.79  Aligned_cols=97  Identities=8%  Similarity=0.077  Sum_probs=62.6

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCC-CcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCCCeEEEecC
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWG-LKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNCV   88 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g-~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~vid~~   88 (202)
                      ..+|||+|++|++|..+++.+...| ++|++++++++.    .+.+...+...+. |-.+...+.+..  .++|+||.+.
T Consensus        23 mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~----~~~~~~~~~~~~~~Dl~d~~~~~~~~--~~~D~vv~~a   96 (236)
T 3qvo_A           23 MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAK----IHKPYPTNSQIIMGDVLNHAALKQAM--QGQDIVYANL   96 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGG----SCSSCCTTEEEEECCTTCHHHHHHHH--TTCSEEEEEC
T ss_pred             ccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhh----hcccccCCcEEEEecCCCHHHHHHHh--cCCCEEEEcC
Confidence            3579999999999999999999999 889988887753    2211111222222 322322244433  4689999999


Q ss_pred             CCchHH----HHHHhccc--CcEEEEEeccC
Q psy2961          89 GGNSAT----NLLRTLVS--KGVMVTYGGMS  113 (202)
Q Consensus        89 g~~~~~----~~~~~l~~--~G~~v~~g~~~  113 (202)
                      +.....    .+++.++.  .+++|.++...
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~iV~iSS~~  127 (236)
T 3qvo_A           97 TGEDLDIQANSVIAAMKACDVKRLIFVLSLG  127 (236)
T ss_dssp             CSTTHHHHHHHHHHHHHHTTCCEEEEECCCC
T ss_pred             CCCchhHHHHHHHHHHHHcCCCEEEEEecce
Confidence            876432    24555543  36899887544

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=98.03  E-value=3.8e-05  Score=55.98  Aligned_cols=81  Identities=15%  Similarity=0.170  Sum_probs=52.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc-cHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD-DIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~-~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~   80 (202)
                      .+.++||+|+++++|.++++.+...|++|+.+.++.. ..++..+.+++.+.....   |   .++... +.+... .++
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   82 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGS   82 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            4679999999999999999999999999988776543 222223344455544322   2   333333 322211 147


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|++|.++|.
T Consensus        83 id~lv~nAg~   92 (246)
T 3osu_A           83 LDVLVNNAGI   92 (246)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999874

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=98.03  E-value=2.7e-05  Score=55.74  Aligned_cols=98  Identities=5%  Similarity=-0.062  Sum_probs=61.9

Q ss_pred             CEEEEeCCCcHHHHHHHHHHH-HCCCcEEEEecCcccHHHHHHHHHhc--CCceEe-ChhHHHhHHHhhCCCCCeEEEec
Q psy2961          12 DVVIQNGANSACGQNVIQIAR-HWGLKTINIVRNRDDIDKLKSYLKSL--GADYVF-TEEELRNISRDASIPKPKLALNC   87 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~-~~g~~vi~~~~~~~~~~~~~~~~~~l--g~~~v~-~~~~~~~~~~~~~~~~~d~vid~   87 (202)
                      .+|+|+|++|++|..+++.+. ..|++|+++.+++++   +.+.+...  +...+. |-.+...+.+..  .++|++|.+
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~---~~~~~~~~~~~~~~~~~D~~d~~~~~~~~--~~~d~vv~~   80 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKT---RIPPEIIDHERVTVIEGSFQNPGXLEQAV--TNAEVVFVG   80 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHH---HSCHHHHTSTTEEEEECCTTCHHHHHHHH--TTCSEEEES
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccc---cchhhccCCCceEEEECCCCCHHHHHHHH--cCCCEEEEc
Confidence            469999999999999998887 899999998887640   12222112  222222 322322244433  478999999


Q ss_pred             CCCch--HHHHHHhccc--CcEEEEEeccCC
Q psy2961          88 VGGNS--ATNLLRTLVS--KGVMVTYGGMSR  114 (202)
Q Consensus        88 ~g~~~--~~~~~~~l~~--~G~~v~~g~~~~  114 (202)
                      +|...  ...+++.++.  .+++|.++....
T Consensus        81 ag~~n~~~~~~~~~~~~~~~~~iv~iSs~~~  111 (221)
T 3r6d_A           81 AMESGSDMASIVKALSRXNIRRVIGVSMAGL  111 (221)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCCEEEEEEETTT
T ss_pred             CCCCChhHHHHHHHHHhcCCCeEEEEeecee
Confidence            98642  2335555543  368998876543

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=98.02  E-value=4.1e-05  Score=55.93  Aligned_cols=78  Identities=10%  Similarity=0.111  Sum_probs=52.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCc-ccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR-DDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~-~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~   80 (202)
                      .+.++||+|+++++|.++++.+...|++|+.+.+++ +..   .+.+++.+.....   |   +++... +.+... -++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~---~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   82 (249)
T 2ew8_A            6 KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEA---EAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGR   82 (249)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHH---HHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhHH---HHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence            478999999999999999999999999999988876 432   2244555543221   3   233333 322211 147


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|++|+++|.
T Consensus        83 id~lv~nAg~   92 (249)
T 2ew8_A           83 CDILVNNAGI   92 (249)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999873

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=98.02  E-value=2.4e-05  Score=56.74  Aligned_cols=77  Identities=19%  Similarity=0.236  Sum_probs=50.6

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCc--eEe-C---hhHHHh-HHHhhC-CCCCe
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD--YVF-T---EEELRN-ISRDAS-IPKPK   82 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~--~v~-~---~~~~~~-~~~~~~-~~~~d   82 (202)
                      +.++||+|+++++|.++++.+...|++|+.+.++.+..++   ..++++..  .+. |   .++... +.+... .+++|
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~---~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id   79 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQ---QELLLGNAVIGIVADLAHHEDVDVAFAAAVEWGGLPE   79 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH---HHHHHGGGEEEEECCTTSHHHHHHHHHHHHHHHCSCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH---HHHHhcCCceEEECCCCCHHHHHHHHHHHHHhcCCCc
Confidence            5789999999999999999999999999998887764222   22233222  111 2   333333 322211 14799


Q ss_pred             EEEecCCC
Q psy2961          83 LALNCVGG   90 (202)
Q Consensus        83 ~vid~~g~   90 (202)
                      ++|+++|.
T Consensus        80 ~lvnnAg~   87 (235)
T 3l6e_A           80 LVLHCAGT   87 (235)
T ss_dssp             EEEEECCC
T ss_pred             EEEECCCC
Confidence            99999884

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=98.02  E-value=2.3e-05  Score=57.51  Aligned_cols=78  Identities=19%  Similarity=0.215  Sum_probs=48.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceE-e--C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-F--T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v-~--~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .|.++||+|+++++|.++++.+...|++|+.+.++++..   .+..++++.... +  |   .++... +.+... .+++
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   82 (257)
T 3tpc_A            6 KSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAG---EEPAAELGAAVRFRNADVTNEADATAALAFAKQEFGHV   82 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC---------------CEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHH---HHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            578999999999999999999999999999998887642   223334443211 1  2   333333 322211 1479


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|+++|.
T Consensus        83 d~lv~nAg~   91 (257)
T 3tpc_A           83 HGLVNCAGT   91 (257)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999873

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=98.02  E-value=2.2e-05  Score=58.51  Aligned_cols=95  Identities=11%  Similarity=-0.090  Sum_probs=62.9

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHC-CCcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCCCeEEEecCCC
Q psy2961          13 VVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNCVGG   90 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~-g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~vid~~g~   90 (202)
                      +|||+|++|.+|..+++.+... |.+|++++++++.    ...+...+...+. |..+...+.+..  .++|+||.+++.
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~----~~~~~~~~v~~~~~D~~d~~~l~~~~--~~~d~vi~~a~~   75 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEK----VPDDWRGKVSVRQLDYFNQESMVEAF--KGMDTVVFIPSI   75 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGG----SCGGGBTTBEEEECCTTCHHHHHHHT--TTCSEEEECCCC
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHH----HHHhhhCCCEEEEcCCCCHHHHHHHH--hCCCEEEEeCCC
Confidence            5999999999999999888777 9999999988763    2333334444333 333333344444  478999999875


Q ss_pred             ch--------HHHHHHhcccC--cEEEEEeccC
Q psy2961          91 NS--------ATNLLRTLVSK--GVMVTYGGMS  113 (202)
Q Consensus        91 ~~--------~~~~~~~l~~~--G~~v~~g~~~  113 (202)
                      ..        ...+++.++..  +++|.++...
T Consensus        76 ~~~~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~~  108 (289)
T 3e48_A           76 IHPSFKRIPEVENLVYAAKQSGVAHIIFIGYYA  108 (289)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHTTCCEEEEEEESC
T ss_pred             CccchhhHHHHHHHHHHHHHcCCCEEEEEcccC
Confidence            31        12345555443  5888887644

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=98.02  E-value=4.4e-05  Score=56.86  Aligned_cols=81  Identities=12%  Similarity=0.159  Sum_probs=51.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc-cHHHHHHHHHhc-CCceE-e--C---hhHHHh-HHHhhC-CC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD-DIDKLKSYLKSL-GADYV-F--T---EEELRN-ISRDAS-IP   79 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~-~~~~~~~~~~~l-g~~~v-~--~---~~~~~~-~~~~~~-~~   79 (202)
                      .++++||+|+++++|.++++.+...|++|+.+.++.. ...+..+.+++. +.... +  |   .++... +.+... -+
T Consensus        24 ~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  103 (281)
T 3v2h_A           24 MTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVADRFG  103 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHHHHHCC
Confidence            4689999999999999999999999999988877443 222222333333 32221 1  2   333333 332211 14


Q ss_pred             CCeEEEecCCC
Q psy2961          80 KPKLALNCVGG   90 (202)
Q Consensus        80 ~~d~vid~~g~   90 (202)
                      ++|++|.++|.
T Consensus       104 ~iD~lv~nAg~  114 (281)
T 3v2h_A          104 GADILVNNAGV  114 (281)
T ss_dssp             SCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999884

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=98.02  E-value=9.6e-05  Score=53.30  Aligned_cols=77  Identities=16%  Similarity=0.148  Sum_probs=50.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHH-HhcC-CceEe-C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLG-ADYVF-T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg-~~~v~-~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .+.+|||+|++|++|..+++.+...|++|+.+.++.+.    .+.+ ++++ ...+. |   .+++.. +.+... -+++
T Consensus         4 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   79 (234)
T 2ehd_A            4 MKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKR----LQALAAELEGALPLPGDVREEGDWARAVAAMEEAFGEL   79 (234)
T ss_dssp             CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHSTTCEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHHhhhceEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            35789999999999999999999999999988877653    3322 3332 22221 2   333333 322211 1479


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.++|.
T Consensus        80 d~li~~Ag~   88 (234)
T 2ehd_A           80 SALVNNAGV   88 (234)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCc
Confidence            999999873

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=98.01  E-value=6.8e-05  Score=55.17  Aligned_cols=80  Identities=14%  Similarity=0.183  Sum_probs=51.7

Q ss_pred             CCCEEEEeCCC--cHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHh-cCCceEe--C---hhHHHh-HHHhhC-CC
Q psy2961          10 PGDVVIQNGAN--SACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS-LGADYVF--T---EEELRN-ISRDAS-IP   79 (202)
Q Consensus        10 ~g~~VlI~g~~--~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~-lg~~~v~--~---~~~~~~-~~~~~~-~~   79 (202)
                      .+.++||+|++  +++|.++++.+...|++|+.+.++++ ..+..+.+.+ .+...++  |   +++... +.+... -+
T Consensus         7 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (261)
T 2wyu_A            7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER-LRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFG   85 (261)
T ss_dssp             TTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGG-GHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            46899999998  89999999888888999998887764 2223344432 3432222  3   233333 322211 14


Q ss_pred             CCeEEEecCCC
Q psy2961          80 KPKLALNCVGG   90 (202)
Q Consensus        80 ~~d~vid~~g~   90 (202)
                      ++|++|+++|.
T Consensus        86 ~iD~lv~~Ag~   96 (261)
T 2wyu_A           86 GLDYLVHAIAF   96 (261)
T ss_dssp             SEEEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999873

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=98.01  E-value=3.3e-05  Score=57.09  Aligned_cols=77  Identities=19%  Similarity=0.241  Sum_probs=50.6

Q ss_pred             CCCEEEEeCC--CcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHH-HhcCCc--eEe-C---hhHHHh-HHH---hh
Q psy2961          10 PGDVVIQNGA--NSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGAD--YVF-T---EEELRN-ISR---DA   76 (202)
Q Consensus        10 ~g~~VlI~g~--~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~--~v~-~---~~~~~~-~~~---~~   76 (202)
                      .|.++||+|+  ++++|.++++.+...|++|+.+.++.+.   ..+.+ ++++..  .+. |   +++... +.+   ..
T Consensus         6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~---~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   82 (269)
T 2h7i_A            6 DGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLR---LIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAI   82 (269)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHH---HHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHH---HHHHHHHhcCCCceEEEccCCCHHHHHHHHHHHHHHh
Confidence            4789999998  8899999999999999999988877642   12333 344432  221 3   333333 332   22


Q ss_pred             C-CCCCeEEEecCC
Q psy2961          77 S-IPKPKLALNCVG   89 (202)
Q Consensus        77 ~-~~~~d~vid~~g   89 (202)
                      + ..++|++|+++|
T Consensus        83 g~~~~iD~lv~nAg   96 (269)
T 2h7i_A           83 GAGNKLDGVVHSIG   96 (269)
T ss_dssp             CTTCCEEEEEECCC
T ss_pred             CCCCCceEEEECCc
Confidence            1 127999999887

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=98.01  E-value=3.7e-05  Score=57.17  Aligned_cols=75  Identities=17%  Similarity=0.237  Sum_probs=51.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhCCCCCe
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDASIPKPK   82 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~~~~~d   82 (202)
                      .|.++||+|+++++|.++++.+...|++|+.+.++.+.   ..+..++++....+   |   .++... +.+...-.++|
T Consensus        29 ~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~---~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~id  105 (281)
T 3ppi_A           29 EGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEK---GKALADELGNRAEFVSTNVTSEDSVLAAIEAANQLGRLR  105 (281)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH---HHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHTTSSEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHH---HHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence            46799999999999999999999999999998877653   22333445543222   2   334444 44432224689


Q ss_pred             EEEec
Q psy2961          83 LALNC   87 (202)
Q Consensus        83 ~vid~   87 (202)
                      ++|.+
T Consensus       106 ~lv~~  110 (281)
T 3ppi_A          106 YAVVA  110 (281)
T ss_dssp             EEEEC
T ss_pred             eEEEc
Confidence            99988

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=98.01  E-value=5.3e-05  Score=57.72  Aligned_cols=81  Identities=7%  Similarity=0.038  Sum_probs=52.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhc---CCceEe-ChhHHHhHHHhhCCCCCeEEE
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL---GADYVF-TEEELRNISRDASIPKPKLAL   85 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~l---g~~~v~-~~~~~~~~~~~~~~~~~d~vi   85 (202)
                      .+.+|||+|++|.+|..+++.+...|++|+++.++.+...+..+.+...   +...+. |-.+...+.+.....++|+||
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi   83 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPITAAI   83 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCCEEE
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCcEEE
Confidence            4679999999999999999999999999999987665432233333322   222222 222222122222224799999


Q ss_pred             ecCCC
Q psy2961          86 NCVGG   90 (202)
Q Consensus        86 d~~g~   90 (202)
                      .+++.
T Consensus        84 h~A~~   88 (341)
T 3enk_A           84 HFAAL   88 (341)
T ss_dssp             ECCCC
T ss_pred             ECccc
Confidence            99974

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=98.01  E-value=2.6e-05  Score=58.01  Aligned_cols=80  Identities=15%  Similarity=0.226  Sum_probs=53.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHH-hcCCceEe---C---hhHHHh-HHHhhC-CCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK-SLGADYVF---T---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~-~lg~~~v~---~---~~~~~~-~~~~~~-~~~   80 (202)
                      .|.++||+|+++++|.++++.+...|++|+.+.++.+...+..+.+. ..+.....   |   .++... +.+... .++
T Consensus        26 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~  105 (277)
T 4fc7_A           26 RDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALKEFGR  105 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            57899999999999999999999999999998887764333333332 23433221   3   333333 322211 147


Q ss_pred             CeEEEecCC
Q psy2961          81 PKLALNCVG   89 (202)
Q Consensus        81 ~d~vid~~g   89 (202)
                      +|++|+++|
T Consensus       106 id~lv~nAg  114 (277)
T 4fc7_A          106 IDILINCAA  114 (277)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCc
Confidence            999999998

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=98.00  E-value=3.4e-05  Score=56.91  Aligned_cols=81  Identities=19%  Similarity=0.231  Sum_probs=53.7

Q ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceE--e--C---hhHHHh-HHHhhC-CC
Q psy2961          10 PGDVVIQNGAN-SACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV--F--T---EEELRN-ISRDAS-IP   79 (202)
Q Consensus        10 ~g~~VlI~g~~-~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v--~--~---~~~~~~-~~~~~~-~~   79 (202)
                      .|+++||+|++ +++|..+++.+...|++|+.+.++.+...+..+.+++.+...+  +  |   .++... +.+... .+
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  100 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEKAG  100 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHHhC
Confidence            57899999996 5899999999999999999998887654444444444442221  1  2   333333 222211 14


Q ss_pred             CCeEEEecCCC
Q psy2961          80 KPKLALNCVGG   90 (202)
Q Consensus        80 ~~d~vid~~g~   90 (202)
                      ++|++|.++|.
T Consensus       101 ~id~li~~Ag~  111 (266)
T 3o38_A          101 RLDVLVNNAGL  111 (266)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCcEEEECCCc
Confidence            79999999983

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=98.00  E-value=3.9e-05  Score=56.82  Aligned_cols=82  Identities=17%  Similarity=0.212  Sum_probs=51.9

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCc-ccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-C
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR-DDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-I   78 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~-~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~   78 (202)
                      ...+.+|||+|+++++|.++++.+...|++|+.+..+. +..++..+.+++.+.....   |   .++... +.+... -
T Consensus        23 m~~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  102 (272)
T 4e3z_A           23 MSDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQF  102 (272)
T ss_dssp             -CCSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhC
Confidence            45678999999999999999999999999987774443 3222223334444543222   2   233333 222211 1


Q ss_pred             CCCeEEEecCC
Q psy2961          79 PKPKLALNCVG   89 (202)
Q Consensus        79 ~~~d~vid~~g   89 (202)
                      +++|++|.++|
T Consensus       103 g~id~li~nAg  113 (272)
T 4e3z_A          103 GRLDGLVNNAG  113 (272)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            47999999987

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=98.00  E-value=3.8e-05  Score=56.44  Aligned_cols=78  Identities=19%  Similarity=0.286  Sum_probs=52.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .+.++||+|+++++|.++++.+...|++|+.+.++.+..   .+..++++.....   |   .++... +.+... .+++
T Consensus         8 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   84 (261)
T 3n74_A            8 EGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGA---ERVAGEIGDAALAVAADISKEADVDAAVEAALSKFGKV   84 (261)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH---HHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHH---HHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence            478999999999999999999999999999988876532   2233445543222   2   233333 322211 1479


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.++|.
T Consensus        85 d~li~~Ag~   93 (261)
T 3n74_A           85 DILVNNAGI   93 (261)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCcc
Confidence            999999873

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=98.00  E-value=1.8e-05  Score=56.53  Aligned_cols=94  Identities=9%  Similarity=0.108  Sum_probs=62.1

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-ChhH-HHhHHHhhCCCCCeEEEecCCC
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEE-LRNISRDASIPKPKLALNCVGG   90 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~-~~~~~~~~~~~~~d~vid~~g~   90 (202)
                      +|||+|++|.+|..+++.+...|.+|++++++++.    .+.+  .+...+. |..+ ...+.+..  .++|+||.++|.
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~----~~~~--~~~~~~~~D~~d~~~~~~~~~--~~~d~vi~~ag~   73 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQ----VPQY--NNVKAVHFDVDWTPEEMAKQL--HGMDAIINVSGS   73 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGG----SCCC--TTEEEEECCTTSCHHHHHTTT--TTCSEEEECCCC
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccc----hhhc--CCceEEEecccCCHHHHHHHH--cCCCEEEECCcC
Confidence            69999999999999999999999999999988753    1111  1222222 3333 33344444  479999999985


Q ss_pred             ch----------HHHHHHhcccC--cEEEEEeccCC
Q psy2961          91 NS----------ATNLLRTLVSK--GVMVTYGGMSR  114 (202)
Q Consensus        91 ~~----------~~~~~~~l~~~--G~~v~~g~~~~  114 (202)
                      ..          ...+++.++..  +++|.++....
T Consensus        74 ~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~  109 (219)
T 3dqp_A           74 GGKSLLKVDLYGAVKLMQAAEKAEVKRFILLSTIFS  109 (219)
T ss_dssp             TTSSCCCCCCHHHHHHHHHHHHTTCCEEEEECCTTT
T ss_pred             CCCCcEeEeHHHHHHHHHHHHHhCCCEEEEECcccc
Confidence            42          22345544433  58998886543

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=98.00  E-value=2.8e-05  Score=56.79  Aligned_cols=78  Identities=19%  Similarity=0.257  Sum_probs=51.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCce--Ee--C---hhHHHh-HHHhhCCCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY--VF--T---EEELRN-ISRDASIPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~--v~--~---~~~~~~-~~~~~~~~~~   81 (202)
                      .+.++||+|++|++|..+++.+...|++|+.+.++++..   .+..++++...  .+  |   .++... +.+.....++
T Consensus        10 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~i   86 (254)
T 2wsb_A           10 DGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAAL---DRAAQELGAAVAARIVADVTDAEAMTAAAAEAEAVAPV   86 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH---HHHHHHHGGGEEEEEECCTTCHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH---HHHHHHhcccceeEEEEecCCHHHHHHHHHHHHhhCCC
Confidence            568999999999999999999999999999988876532   12223343322  11  3   233333 3222112579


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.++|.
T Consensus        87 d~li~~Ag~   95 (254)
T 2wsb_A           87 SILVNSAGI   95 (254)
T ss_dssp             CEEEECCCC
T ss_pred             cEEEECCcc
Confidence            999999873

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=97.99  E-value=5.5e-05  Score=55.45  Aligned_cols=78  Identities=13%  Similarity=0.159  Sum_probs=52.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceE-e--C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-F--T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v-~--~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .|.++||+|+++++|..+++.+...|++|+.+.++++  ++..+.+++.+.... +  |   ++++.. +.+... -+++
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i   80 (255)
T 2q2v_A            3 KGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP--APALAEIARHGVKAVHHPADLSDVAQIEALFALAEREFGGV   80 (255)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC--HHHHHHHHTTSCCEEEECCCTTSHHHHHHHHHHHHHHHSSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch--HHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence            4689999999999999999999999999988887765  223344444454322 1  2   233333 322111 1479


Q ss_pred             eEEEecCC
Q psy2961          82 KLALNCVG   89 (202)
Q Consensus        82 d~vid~~g   89 (202)
                      |++|+++|
T Consensus        81 d~lv~~Ag   88 (255)
T 2q2v_A           81 DILVNNAG   88 (255)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            99999987

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=97.99  E-value=4.4e-05  Score=57.00  Aligned_cols=81  Identities=12%  Similarity=0.130  Sum_probs=52.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCc-ccHHHHHHHHH-hcCCceEe------C----hhHHHh-HHHhh
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR-DDIDKLKSYLK-SLGADYVF------T----EEELRN-ISRDA   76 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~-~~~~~~~~~~~-~lg~~~v~------~----~~~~~~-~~~~~   76 (202)
                      .|.++||+|+++++|.++++.+...|++|+.+.++. +...+..+.++ +.+.....      +    .++... +.+..
T Consensus        22 ~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~~~~~  101 (288)
T 2x9g_A           22 EAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEIINSCF  101 (288)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHHHHHHH
Confidence            478999999999999999999888999999988887 53322233333 33432211      2    233333 22221


Q ss_pred             C-CCCCeEEEecCCC
Q psy2961          77 S-IPKPKLALNCVGG   90 (202)
Q Consensus        77 ~-~~~~d~vid~~g~   90 (202)
                      . .+++|++|+++|.
T Consensus       102 ~~~g~iD~lvnnAG~  116 (288)
T 2x9g_A          102 RAFGRCDVLVNNASA  116 (288)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HhcCCCCEEEECCCC
Confidence            1 1479999999873

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=97.99  E-value=6e-05  Score=54.78  Aligned_cols=81  Identities=14%  Similarity=0.193  Sum_probs=52.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHh-cCCceE-e--C---hhHHHh-HHHhhC-CCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS-LGADYV-F--T---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~-lg~~~v-~--~---~~~~~~-~~~~~~-~~~   80 (202)
                      .+.+++|+|++|++|..+++.+...|++|+.+.++.+..++..+.+++ .+.... +  |   .+++.. +.+... -++
T Consensus         6 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   85 (248)
T 2pnf_A            6 QGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNLVDG   85 (248)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHSSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            468999999999999999999889999999988876532222223322 343321 1  2   333333 332211 147


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|++|.++|.
T Consensus        86 ~d~vi~~Ag~   95 (248)
T 2pnf_A           86 IDILVNNAGI   95 (248)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999873

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=97.99  E-value=6.6e-05  Score=55.34  Aligned_cols=82  Identities=9%  Similarity=0.122  Sum_probs=53.9

Q ss_pred             CCCCCEEEEeCCC--cHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHH-HhcCCceEe--C---hhHHHh-HHHhhC-
Q psy2961           8 LSPGDVVIQNGAN--SACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGADYVF--T---EEELRN-ISRDAS-   77 (202)
Q Consensus         8 ~~~g~~VlI~g~~--~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~v~--~---~~~~~~-~~~~~~-   77 (202)
                      ...+++|||+|++  +++|..+++.+...|++|+.+.++... .+..+.+ ++.+...++  |   .++... +.+... 
T Consensus        11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   89 (271)
T 3ek2_A           11 FLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRF-KDRITEFAAEFGSELVFPCDVADDAQIDALFASLKTH   89 (271)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGG-HHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhh-HHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence            4568899999998  999999999999999999988877543 2233333 344432222  2   333333 332211 


Q ss_pred             CCCCeEEEecCCC
Q psy2961          78 IPKPKLALNCVGG   90 (202)
Q Consensus        78 ~~~~d~vid~~g~   90 (202)
                      .+++|++|.++|.
T Consensus        90 ~g~id~lv~nAg~  102 (271)
T 3ek2_A           90 WDSLDGLVHSIGF  102 (271)
T ss_dssp             CSCEEEEEECCCC
T ss_pred             cCCCCEEEECCcc
Confidence            2479999999873

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=97.99  E-value=3e-05  Score=57.54  Aligned_cols=78  Identities=18%  Similarity=0.245  Sum_probs=51.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCce-Ee--C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-VF--T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-v~--~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .+.++||+|+++++|.++++.+...|++|+.+.++.+..   .+..++++... .+  |   .++... +.+... .+++
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i  103 (272)
T 4dyv_A           27 GKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDAL---QETAAEIGDDALCVPTDVTDPDSVRALFTATVEKFGRV  103 (272)
T ss_dssp             -CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHH---HHHHHHHTSCCEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHH---HHHHHHhCCCeEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            578999999999999999999999999999888776532   23334444321 11  2   333333 322211 1479


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|+++|.
T Consensus       104 D~lVnnAg~  112 (272)
T 4dyv_A          104 DVLFNNAGT  112 (272)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999874

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=97.99  E-value=4.4e-05  Score=56.34  Aligned_cols=81  Identities=19%  Similarity=0.247  Sum_probs=52.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEec-CcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVR-NRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~-~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~   80 (202)
                      .+.+|||+|++|++|..+++.+...|++|+.+.+ +++..++..+.+++.+....+   |   .+++.. +.+... -++
T Consensus        20 ~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   99 (274)
T 1ja9_A           20 AGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFGG   99 (274)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            4679999999999999999999999999999887 443322223344444543221   3   233333 322111 147


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|++|.++|.
T Consensus       100 ~d~vi~~Ag~  109 (274)
T 1ja9_A          100 LDFVMSNSGM  109 (274)
T ss_dssp             EEEEECCCCC
T ss_pred             CCEEEECCCC
Confidence            9999999873

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=97.98  E-value=6e-05  Score=56.53  Aligned_cols=80  Identities=16%  Similarity=0.287  Sum_probs=52.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhc-CCceE-e--C---hhHHHh-HHHhh-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL-GADYV-F--T---EEELRN-ISRDA-SIPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~l-g~~~v-~--~---~~~~~~-~~~~~-~~~~   80 (202)
                      .|.+|||+|++|++|.++++.+...|++|+.+.++.+...+..+.+++. +.... +  |   .+++.. +.... ..+.
T Consensus        25 ~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~  104 (302)
T 1w6u_A           25 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAGH  104 (302)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence            5689999999999999999999999999999888765432222333322 43321 1  2   333333 33221 1247


Q ss_pred             CeEEEecCC
Q psy2961          81 PKLALNCVG   89 (202)
Q Consensus        81 ~d~vid~~g   89 (202)
                      +|++|.++|
T Consensus       105 id~li~~Ag  113 (302)
T 1w6u_A          105 PNIVINNAA  113 (302)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            899999988

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=97.98  E-value=4.7e-05  Score=56.59  Aligned_cols=78  Identities=15%  Similarity=0.190  Sum_probs=52.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .+.+|||+|++|++|.++++.+...|++|+.+.++.+..   .+...+++.....   |   .++... +.+... .+++
T Consensus         4 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i   80 (281)
T 3m1a_A            4 SAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEAL---DDLVAAYPDRAEAISLDVTDGERIDVVAADVLARYGRV   80 (281)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGG---HHHHHHCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH---HHHHHhccCCceEEEeeCCCHHHHHHHHHHHHHhCCCC
Confidence            468999999999999999999999999999999887642   2333444432211   2   333333 322211 1479


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.++|.
T Consensus        81 d~lv~~Ag~   89 (281)
T 3m1a_A           81 DVLVNNAGR   89 (281)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCc
Confidence            999999984

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=97.98  E-value=4e-05  Score=56.79  Aligned_cols=80  Identities=11%  Similarity=0.165  Sum_probs=51.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEec-CcccHHHHHHHHHhc-CCceE-e--C---h----hHHHh-HHHhh
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVR-NRDDIDKLKSYLKSL-GADYV-F--T---E----EELRN-ISRDA   76 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~-~~~~~~~~~~~~~~l-g~~~v-~--~---~----~~~~~-~~~~~   76 (202)
                      .|.++||+|+++++|.++++.+...|++|+.+.+ +++..++..+.+++. +.... +  |   .    ++... +.+..
T Consensus        10 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   89 (276)
T 1mxh_A           10 ECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSF   89 (276)
T ss_dssp             -CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCCccccHHHHHHHHHHHH
Confidence            4689999999999999999999999999999888 654322222333332 43221 1  2   3    33333 32221


Q ss_pred             C-CCCCeEEEecCC
Q psy2961          77 S-IPKPKLALNCVG   89 (202)
Q Consensus        77 ~-~~~~d~vid~~g   89 (202)
                      . .+++|++|+++|
T Consensus        90 ~~~g~id~lv~nAg  103 (276)
T 1mxh_A           90 RAFGRCDVLVNNAS  103 (276)
T ss_dssp             HHHSCCCEEEECCC
T ss_pred             HhcCCCCEEEECCC
Confidence            1 147999999987

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=97.98  E-value=3.9e-05  Score=57.15  Aligned_cols=78  Identities=15%  Similarity=0.196  Sum_probs=52.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.++.+.   ..+..++++.....   |   .++... +.+... .+++
T Consensus         4 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~---~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   80 (281)
T 3zv4_A            4 TGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAER---LRELEVAHGGNAVGVVGDVRSLQDQKRAAERCLAAFGKI   80 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHH---HHHHHHHTBTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHH---HHHHHHHcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence            47899999999999999999999999999998877653   12233445443222   2   333333 222211 1579


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|+++|.
T Consensus        81 D~lvnnAg~   89 (281)
T 3zv4_A           81 DTLIPNAGI   89 (281)
T ss_dssp             CEEECCCCC
T ss_pred             CEEEECCCc
Confidence            999999873

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=97.98  E-value=2.5e-05  Score=57.27  Aligned_cols=78  Identities=17%  Similarity=0.178  Sum_probs=51.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceE---eC---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FT---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v---~~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .|.++||+|+++++|.++++.+...|++|+.+.++++.   ..+..++++....   .|   +++... +.+... -+++
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~---~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   80 (254)
T 1hdc_A            4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEE---GAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSV   80 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH---HHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHH---HHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            46899999999999999999999999999998877653   1223344443221   13   333333 332211 1479


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|+++|.
T Consensus        81 D~lv~nAg~   89 (254)
T 1hdc_A           81 DGLVNNAGI   89 (254)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999873

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=97.98  E-value=8.2e-06  Score=60.22  Aligned_cols=75  Identities=12%  Similarity=0.201  Sum_probs=49.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCc-eEeChhHHHh-HHHhhC-CCCCeEEEe
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD-YVFTEEELRN-ISRDAS-IPKPKLALN   86 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~-~v~~~~~~~~-~~~~~~-~~~~d~vid   86 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.+++++     ...+++... .+-++++... +.+... -+++|++++
T Consensus        10 ~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~-----~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDilVn   84 (261)
T 4h15_A           10 RGKRALITAGTKGAGAATVSLFLELGAQVLTTARARPE-----GLPEELFVEADLTTKEGCAIVAEATRQRLGGVDVIVH   84 (261)
T ss_dssp             TTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCT-----TSCTTTEEECCTTSHHHHHHHHHHHHHHTSSCSEEEE
T ss_pred             CCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchh-----CCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            68999999999999999999999999999988876542     111111000 0112333333 322211 157999999


Q ss_pred             cCC
Q psy2961          87 CVG   89 (202)
Q Consensus        87 ~~g   89 (202)
                      ++|
T Consensus        85 nAG   87 (261)
T 4h15_A           85 MLG   87 (261)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            886

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=97.97  E-value=4.7e-05  Score=55.94  Aligned_cols=78  Identities=21%  Similarity=0.312  Sum_probs=52.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .+.+|||+|+++++|..+++.+...|++|+.+.++.+..   .+..++++....+   |   ++++.. +.+... .+++
T Consensus        11 ~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i   87 (265)
T 2o23_A           11 KGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGG---EAQAKKLGNNCVFAPADVTSEKDVQTALALAKGKFGRV   87 (265)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSH---HHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhH---HHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCCC
Confidence            468999999999999999999999999999999887653   2333444433211   2   233333 322111 1479


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.++|.
T Consensus        88 d~li~~Ag~   96 (265)
T 2o23_A           88 DVAVNCAGI   96 (265)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCcc
Confidence            999999873

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=97.97  E-value=3e-05  Score=56.88  Aligned_cols=75  Identities=16%  Similarity=0.293  Sum_probs=50.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhCCCCCe
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDASIPKPK   82 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~~~~~d   82 (202)
                      .++++||+|+++++|.++++.+...|++|+.+.++.+      +..++++.....   |   .++... +......+++|
T Consensus         8 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~------~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~g~id   81 (257)
T 3tl3_A            8 RDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGE------DVVADLGDRARFAAADVTDEAAVASALDLAETMGTLR   81 (257)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCH------HHHHHTCTTEEEEECCTTCHHHHHHHHHHHHHHSCEE
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCchH------HHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhCCCC
Confidence            4689999999999999999999999999998887553      334445543222   2   333333 32221125799


Q ss_pred             EEEecCCC
Q psy2961          83 LALNCVGG   90 (202)
Q Consensus        83 ~vid~~g~   90 (202)
                      ++|+++|.
T Consensus        82 ~lv~nAg~   89 (257)
T 3tl3_A           82 IVVNCAGT   89 (257)
T ss_dssp             EEEECGGG
T ss_pred             EEEECCCC
Confidence            99999983

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.96  E-value=0.00012  Score=48.63  Aligned_cols=95  Identities=11%  Similarity=0.029  Sum_probs=66.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCCCeEEEecC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNCV   88 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~vid~~   88 (202)
                      ..++|+|.|.| .+|..+++.++..|.+|+++..+++    +.+.+++.|...+. |..+...+.+ .+-.++|+++-++
T Consensus         6 ~~~~viIiG~G-~~G~~la~~L~~~g~~v~vid~~~~----~~~~~~~~g~~~i~gd~~~~~~l~~-a~i~~ad~vi~~~   79 (140)
T 3fwz_A            6 ICNHALLVGYG-RVGSLLGEKLLASDIPLVVIETSRT----RVDELRERGVRAVLGNAANEEIMQL-AHLECAKWLILTI   79 (140)
T ss_dssp             CCSCEEEECCS-HHHHHHHHHHHHTTCCEEEEESCHH----HHHHHHHTTCEEEESCTTSHHHHHH-TTGGGCSEEEECC
T ss_pred             CCCCEEEECcC-HHHHHHHHHHHHCCCCEEEEECCHH----HHHHHHHcCCCEEECCCCCHHHHHh-cCcccCCEEEEEC
Confidence            45789999997 9999999999999999999988775    57777778887665 2222211322 2224689999999


Q ss_pred             CCchHHH----HHHhcccCcEEEEEe
Q psy2961          89 GGNSATN----LLRTLVSKGVMVTYG  110 (202)
Q Consensus        89 g~~~~~~----~~~~l~~~G~~v~~g  110 (202)
                      +......    ..+.+.+..+++.-.
T Consensus        80 ~~~~~n~~~~~~a~~~~~~~~iiar~  105 (140)
T 3fwz_A           80 PNGYEAGEIVASARAKNPDIEIIARA  105 (140)
T ss_dssp             SCHHHHHHHHHHHHHHCSSSEEEEEE
T ss_pred             CChHHHHHHHHHHHHHCCCCeEEEEE
Confidence            8765432    344556677766543

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=97.95  E-value=9.6e-05  Score=52.79  Aligned_cols=92  Identities=18%  Similarity=0.174  Sum_probs=60.7

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCCCeEEEecCCCc
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNCVGGN   91 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~vid~~g~~   91 (202)
                      +|||+|++|.+|..+++.+...|.+|++++++++    +.+.+...+...+. |-.+.. . +..  .++|+||.++|..
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~----~~~~~~~~~~~~~~~D~~d~~-~-~~~--~~~d~vi~~ag~~   73 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQ----KAADRLGATVATLVKEPLVLT-E-ADL--DSVDAVVDALSVP   73 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHTCTTSEEEECCGGGCC-H-HHH--TTCSEEEECCCCC
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEeccc----ccccccCCCceEEeccccccc-H-hhc--ccCCEEEECCccC
Confidence            6999999999999999999999999999998865    33433333444333 222211 1 222  5789999999863


Q ss_pred             --------h---HHHHHHhcc-cCcEEEEEecc
Q psy2961          92 --------S---ATNLLRTLV-SKGVMVTYGGM  112 (202)
Q Consensus        92 --------~---~~~~~~~l~-~~G~~v~~g~~  112 (202)
                              .   ...+++.++ .++++|.+++.
T Consensus        74 ~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~  106 (224)
T 3h2s_A           74 WGSGRGYLHLDFATHLVSLLRNSDTLAVFILGS  106 (224)
T ss_dssp             TTSSCTHHHHHHHHHHHHTCTTCCCEEEEECCG
T ss_pred             CCcchhhHHHHHHHHHHHHHHHcCCcEEEEecc
Confidence                    1   122455554 34788888643

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=97.94  E-value=8.4e-05  Score=54.36  Aligned_cols=93  Identities=14%  Similarity=0.197  Sum_probs=58.9

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhC--CCCCeEEEecCC
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDAS--IPKPKLALNCVG   89 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~--~~~~d~vid~~g   89 (202)
                      .+|||+|++|++|..+++.+...|++|+.+.++++..    +      .....|-.+...+.+...  .+++|++|+++|
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~----~------~~~~~Dl~~~~~v~~~~~~~~~~id~lv~~Ag   71 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEV----I------ADLSTAEGRKQAIADVLAKCSKGMDGLVLCAG   71 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSE----E------CCTTSHHHHHHHHHHHHTTCTTCCSEEEECCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhh----c------cccccCCCCHHHHHHHHHHhCCCCCEEEECCC
Confidence            4799999999999999999999999999988876531    1      011112122221333222  147899999987


Q ss_pred             Cch-------------------HHHHHHhccc--CcEEEEEeccCC
Q psy2961          90 GNS-------------------ATNLLRTLVS--KGVMVTYGGMSR  114 (202)
Q Consensus        90 ~~~-------------------~~~~~~~l~~--~G~~v~~g~~~~  114 (202)
                      ...                   ...+++.|..  .|++|.++....
T Consensus        72 ~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~  117 (257)
T 1fjh_A           72 LGPQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVAS  117 (257)
T ss_dssp             CCTTCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGG
T ss_pred             CCCCcccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhh
Confidence            543                   1113334433  389999886543

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=97.93  E-value=4.2e-05  Score=60.01  Aligned_cols=89  Identities=9%  Similarity=0.153  Sum_probs=65.1

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEec
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNC   87 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~   87 (202)
                      .-.|.+|+|.|.| .+|...++.++.+|++|+++..++.    +...+...|...+    ++.+   ..  ...|+++.+
T Consensus       208 ~L~GktVgIiG~G-~IG~~vA~~Lka~Ga~Viv~D~~p~----~a~~A~~~G~~~~----sL~e---al--~~ADVVilt  273 (436)
T 3h9u_A          208 MIAGKTACVCGYG-DVGKGCAAALRGFGARVVVTEVDPI----NALQAAMEGYQVL----LVED---VV--EEAHIFVTT  273 (436)
T ss_dssp             CCTTCEEEEECCS-HHHHHHHHHHHHTTCEEEEECSCHH----HHHHHHHTTCEEC----CHHH---HT--TTCSEEEEC
T ss_pred             cccCCEEEEEeeC-HHHHHHHHHHHHCCCEEEEECCChh----hhHHHHHhCCeec----CHHH---HH--hhCCEEEEC
Confidence            3468999999998 9999999999999999887665443    3344555665432    2222   22  467999988


Q ss_pred             CCCchHH--HHHHhcccCcEEEEEe
Q psy2961          88 VGGNSAT--NLLRTLVSKGVMVTYG  110 (202)
Q Consensus        88 ~g~~~~~--~~~~~l~~~G~~v~~g  110 (202)
                      .+.....  ..+..|++++.++.++
T Consensus       274 ~gt~~iI~~e~l~~MK~gAIVINvg  298 (436)
T 3h9u_A          274 TGNDDIITSEHFPRMRDDAIVCNIG  298 (436)
T ss_dssp             SSCSCSBCTTTGGGCCTTEEEEECS
T ss_pred             CCCcCccCHHHHhhcCCCcEEEEeC
Confidence            8876543  3688899999999987

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=97.92  E-value=5.3e-05  Score=55.16  Aligned_cols=79  Identities=14%  Similarity=0.186  Sum_probs=50.0

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHH-HhcCCceE-e--C---hhHHHh-HHHhhC-CCCC
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGADYV-F--T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~v-~--~---~~~~~~-~~~~~~-~~~~   81 (202)
                      +.++||+|++|++|..+++.+...|++|+.+.++++..++..+.+ ++.+.... +  |   ++++.. +.+... .+++
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   81 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQFGAI   81 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence            578999999999999999998899999999888765322222222 22232211 1  2   333333 322211 1479


Q ss_pred             eEEEecCC
Q psy2961          82 KLALNCVG   89 (202)
Q Consensus        82 d~vid~~g   89 (202)
                      |++|.++|
T Consensus        82 d~li~~Ag   89 (250)
T 2cfc_A           82 DVLVNNAG   89 (250)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999887

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=97.92  E-value=7e-05  Score=53.07  Aligned_cols=100  Identities=17%  Similarity=0.265  Sum_probs=65.2

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCc-eEe-ChhHHHh-HHHhhCCCCC
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD-YVF-TEEELRN-ISRDASIPKP   81 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~-~v~-~~~~~~~-~~~~~~~~~~   81 (202)
                      ...+.++++||-.|+|+  |..++.+++. +.+|+++..+++..+...+.++.+|.. .+- ...|..+ +..   ...+
T Consensus        50 ~l~~~~~~~vLDlGcG~--G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~---~~~~  123 (204)
T 3njr_A           50 ALAPRRGELLWDIGGGS--GSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALAD---LPLP  123 (204)
T ss_dssp             HHCCCTTCEEEEETCTT--CHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTT---SCCC
T ss_pred             hcCCCCCCEEEEecCCC--CHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhccc---CCCC
Confidence            34678899999999984  8888899888 889988887776433333344455654 221 1122222 211   1468


Q ss_pred             eEEEecCCCch--HHHHHHhcccCcEEEEEe
Q psy2961          82 KLALNCVGGNS--ATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        82 d~vid~~g~~~--~~~~~~~l~~~G~~v~~g  110 (202)
                      |+|+...+...  +..+.+.|+|+|+++...
T Consensus       124 D~v~~~~~~~~~~l~~~~~~LkpgG~lv~~~  154 (204)
T 3njr_A          124 EAVFIGGGGSQALYDRLWEWLAPGTRIVANA  154 (204)
T ss_dssp             SEEEECSCCCHHHHHHHHHHSCTTCEEEEEE
T ss_pred             CEEEECCcccHHHHHHHHHhcCCCcEEEEEe
Confidence            99987654333  334778999999998865

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=97.92  E-value=8.3e-05  Score=55.83  Aligned_cols=80  Identities=20%  Similarity=0.320  Sum_probs=51.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHh-----cCCceE-e--C---hhHHHh-HHHhhC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS-----LGADYV-F--T---EEELRN-ISRDAS   77 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~-----lg~~~v-~--~---~~~~~~-~~~~~~   77 (202)
                      .+.+|||+|++|++|..+++.+...|++|+.+.++.+...+..+.++.     .+.... +  |   .+++.. +.....
T Consensus        17 ~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~   96 (303)
T 1yxm_A           17 QGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTLD   96 (303)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHHHHH
Confidence            468999999999999999999999999999988876543222333333     232211 1  2   233333 222111


Q ss_pred             -CCCCeEEEecCC
Q psy2961          78 -IPKPKLALNCVG   89 (202)
Q Consensus        78 -~~~~d~vid~~g   89 (202)
                       -+++|++|.++|
T Consensus        97 ~~g~id~li~~Ag  109 (303)
T 1yxm_A           97 TFGKINFLVNNGG  109 (303)
T ss_dssp             HHSCCCEEEECCC
T ss_pred             HcCCCCEEEECCC
Confidence             147999999998

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=97.91  E-value=6.4e-05  Score=56.25  Aligned_cols=38  Identities=16%  Similarity=0.152  Sum_probs=33.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEe-cCccc
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIV-RNRDD   47 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~-~~~~~   47 (202)
                      .+.++||+|+++++|.++++.+...|++|+.+. ++.+.
T Consensus         8 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~   46 (291)
T 1e7w_A            8 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAE   46 (291)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHH
Confidence            468999999999999999999999999999988 77654

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.91  E-value=4.6e-05  Score=56.54  Aligned_cols=81  Identities=15%  Similarity=0.202  Sum_probs=50.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHH---hcCCc--eE-eC---hhHHHh-HHHhhC-C
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK---SLGAD--YV-FT---EEELRN-ISRDAS-I   78 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~---~lg~~--~v-~~---~~~~~~-~~~~~~-~   78 (202)
                      .+.++||+|++|++|.++++.+...|++|+.+.++++..++..+.+.   ..+..  .+ .|   +++... +.+... -
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (278)
T 1spx_A            5 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKF   84 (278)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999888899999998887654222222221   11211  11 13   233333 322211 1


Q ss_pred             CCCeEEEecCCC
Q psy2961          79 PKPKLALNCVGG   90 (202)
Q Consensus        79 ~~~d~vid~~g~   90 (202)
                      +++|++|+++|.
T Consensus        85 g~id~lv~~Ag~   96 (278)
T 1spx_A           85 GKLDILVNNAGA   96 (278)
T ss_dssp             SCCCEEEECCC-
T ss_pred             CCCCEEEECCCC
Confidence            479999999874

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=97.91  E-value=6.9e-05  Score=57.04  Aligned_cols=80  Identities=11%  Similarity=0.101  Sum_probs=50.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCccc-HHHHHHH----HHhcCCceEe---C---hhHHHh-HHHhhC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD-IDKLKSY----LKSLGADYVF---T---EEELRN-ISRDAS   77 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~-~~~~~~~----~~~lg~~~v~---~---~~~~~~-~~~~~~   77 (202)
                      .+.++||+|+++++|.++++.+...|++|++++++... ..++.+.    ++..+.....   |   ..++.. +.+...
T Consensus         4 ~~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~   83 (324)
T 3u9l_A            4 SKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQIIG   83 (324)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHH
Confidence            36799999999999999999999999999988775211 0112222    2334433211   2   333333 332211


Q ss_pred             -CCCCeEEEecCC
Q psy2961          78 -IPKPKLALNCVG   89 (202)
Q Consensus        78 -~~~~d~vid~~g   89 (202)
                       .+++|++|+++|
T Consensus        84 ~~g~iD~lVnnAG   96 (324)
T 3u9l_A           84 EDGRIDVLIHNAG   96 (324)
T ss_dssp             HHSCCSEEEECCC
T ss_pred             HcCCCCEEEECCC
Confidence             147999999998

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.91  E-value=9e-06  Score=58.94  Aligned_cols=36  Identities=22%  Similarity=0.369  Sum_probs=32.7

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      +.++||+|+++++|.++++.+...|++|+.+.++++
T Consensus         3 ~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~   38 (236)
T 1ooe_A            3 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN   38 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCcc
Confidence            578999999999999999999999999999888765

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=97.90  E-value=6.1e-05  Score=55.14  Aligned_cols=78  Identities=18%  Similarity=0.194  Sum_probs=51.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceE-e--C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-F--T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v-~--~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .|.++||+|+++++|.++++.+...|++|+.+.++++..   .+..++++.... +  |   .++... +..... -+++
T Consensus         5 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i   81 (253)
T 1hxh_A            5 QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAG---QQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTL   81 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHH---HHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH---HHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            468999999999999999999999999998888776531   222334443321 1  2   333333 322211 1469


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|+++|.
T Consensus        82 d~lv~~Ag~   90 (253)
T 1hxh_A           82 NVLVNNAGI   90 (253)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999873

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=97.90  E-value=0.00012  Score=53.15  Aligned_cols=77  Identities=19%  Similarity=0.283  Sum_probs=50.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhc-CCceEe-ChhHHHhHHHhhC-CCCCeEEEe
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL-GADYVF-TEEELRNISRDAS-IPKPKLALN   86 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~l-g~~~v~-~~~~~~~~~~~~~-~~~~d~vid   86 (202)
                      .+.+|||+|++|++|..+++.+...|++|+.+.++++..   .+..+++ +...+. |-.+...+.+... .+++|++|+
T Consensus         6 ~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~   82 (244)
T 1cyd_A            6 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDL---VSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVN   82 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHH---HHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEEEE
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHH---HHHHHhccCCCcEEecCCCHHHHHHHHHHcCCCCEEEE
Confidence            468999999999999999999999999999888776531   1222333 333222 3222222333222 246899999


Q ss_pred             cCC
Q psy2961          87 CVG   89 (202)
Q Consensus        87 ~~g   89 (202)
                      ++|
T Consensus        83 ~Ag   85 (244)
T 1cyd_A           83 NAA   85 (244)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            988

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=97.89  E-value=7.6e-05  Score=56.68  Aligned_cols=80  Identities=18%  Similarity=0.217  Sum_probs=51.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEe---------cCcccHHHHHHHHHhcCCceEeC---hhHHHh-HHHhh
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIV---------RNRDDIDKLKSYLKSLGADYVFT---EEELRN-ISRDA   76 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~---------~~~~~~~~~~~~~~~lg~~~v~~---~~~~~~-~~~~~   76 (202)
                      .|.++||+|+++++|..+++.+...|++|+.+.         ++.+..++..+.+++.+...+.|   ..+... +.+..
T Consensus         8 ~gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~~~~~D~~~~~~~~~~~~~~~   87 (319)
T 1gz6_A            8 DGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVKTAL   87 (319)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHHH
Confidence            478999999999999999999999999988863         33433222233444445444443   233333 32221


Q ss_pred             C-CCCCeEEEecCC
Q psy2961          77 S-IPKPKLALNCVG   89 (202)
Q Consensus        77 ~-~~~~d~vid~~g   89 (202)
                      . .+++|++|+++|
T Consensus        88 ~~~g~iD~lVnnAG  101 (319)
T 1gz6_A           88 DTFGRIDVVVNNAG  101 (319)
T ss_dssp             HHTSCCCEEEECCC
T ss_pred             HHcCCCCEEEECCC
Confidence            1 257999999987

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=97.89  E-value=5.6e-05  Score=55.09  Aligned_cols=75  Identities=17%  Similarity=0.191  Sum_probs=49.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcC-CceEe-C---hhHHHhHHHhhCCCCCeEE
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG-ADYVF-T---EEELRNISRDASIPKPKLA   84 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg-~~~v~-~---~~~~~~~~~~~~~~~~d~v   84 (202)
                      .|.++||+|+++++|.++++.+...|++|+.+.++++    +.+.+.++. ...+. |   +++...+.+..  +++|++
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~id~l   78 (246)
T 2ag5_A            5 DGKVIILTAAAQGIGQAAALAFAREGAKVIATDINES----KLQELEKYPGIQTRVLDVTKKKQIDQFANEV--ERLDVL   78 (246)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHGGGGGSTTEEEEECCTTCHHHHHHHHHHC--SCCSEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHhccCceEEEeeCCCHHHHHHHHHHh--CCCCEE
Confidence            4789999999999999999999999999998887654    233222332 12111 3   22232322222  579999


Q ss_pred             EecCCC
Q psy2961          85 LNCVGG   90 (202)
Q Consensus        85 id~~g~   90 (202)
                      |+++|.
T Consensus        79 v~~Ag~   84 (246)
T 2ag5_A           79 FNVAGF   84 (246)
T ss_dssp             EECCCC
T ss_pred             EECCcc
Confidence            999873

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=97.89  E-value=7.2e-05  Score=55.28  Aligned_cols=80  Identities=16%  Similarity=0.192  Sum_probs=50.6

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCccc-HHHHHHHHHhcCCceE-e--C---hhHHHh-H---HHhhC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD-IDKLKSYLKSLGADYV-F--T---EEELRN-I---SRDAS   77 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~-~~~~~~~~~~lg~~~v-~--~---~~~~~~-~---~~~~~   77 (202)
                      ..+.++||+|+++++|.++++.+...|++|+.+.++... ..+..+.++..+.... +  |   .++... +   .+.. 
T Consensus        23 ~~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~-  101 (269)
T 3gk3_A           23 QAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVLADF-  101 (269)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             hcCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHc-
Confidence            457789999999999999999999999999888744432 1111222333343221 1  3   233333 2   2222 


Q ss_pred             CCCCeEEEecCCC
Q psy2961          78 IPKPKLALNCVGG   90 (202)
Q Consensus        78 ~~~~d~vid~~g~   90 (202)
                       +++|++|.++|.
T Consensus       102 -g~id~li~nAg~  113 (269)
T 3gk3_A          102 -GKVDVLINNAGI  113 (269)
T ss_dssp             -SCCSEEEECCCC
T ss_pred             -CCCCEEEECCCc
Confidence             479999999873

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=97.89  E-value=4.9e-05  Score=53.49  Aligned_cols=95  Identities=14%  Similarity=0.160  Sum_probs=60.1

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCCCeEEEecCCC
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNCVGG   90 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~vid~~g~   90 (202)
                      .+|+|+|++|.+|..+++.+...|.+|+++.++++.    .+.....+...+. |..+...+.+..  .++|+||.+++.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~----~~~~~~~~~~~~~~D~~~~~~~~~~~--~~~d~vi~~a~~   77 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSR----LPSEGPRPAHVVVGDVLQAADVDKTV--AGQDAVIVLLGT   77 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGG----SCSSSCCCSEEEESCTTSHHHHHHHH--TTCSEEEECCCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhh----cccccCCceEEEEecCCCHHHHHHHH--cCCCEEEECccC
Confidence            689999999999999999998899999999887653    1111111222222 323322233433  468999999885


Q ss_pred             ch-----------HHHHHHhccc--CcEEEEEecc
Q psy2961          91 NS-----------ATNLLRTLVS--KGVMVTYGGM  112 (202)
Q Consensus        91 ~~-----------~~~~~~~l~~--~G~~v~~g~~  112 (202)
                      ..           ...+++.+..  .++++.++..
T Consensus        78 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~  112 (206)
T 1hdo_A           78 RNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSA  112 (206)
T ss_dssp             TTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECCG
T ss_pred             CCCCCccchHHHHHHHHHHHHHHhCCCeEEEEeee
Confidence            32           2224444433  3688888754

>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}

Probab=97.89  E-value=8.3e-05  Score=60.30  Aligned_cols=84  Identities=13%  Similarity=0.099  Sum_probs=55.3

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEe--cCc-------------ccHHHHHHHHHhcCCceEe---C---
Q psy2961           7 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIV--RNR-------------DDIDKLKSYLKSLGADYVF---T---   65 (202)
Q Consensus         7 ~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~--~~~-------------~~~~~~~~~~~~lg~~~v~---~---   65 (202)
                      .++++.++||+|++|++|..+++.+...|+++++.+  ++.             +...+..+.+++.|....+   |   
T Consensus       247 ~~~~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvtd  326 (525)
T 3qp9_A          247 WWQADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDLTD  326 (525)
T ss_dssp             SSCTTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCTTS
T ss_pred             eecCCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCCCC
Confidence            467899999999999999999988888899855554  442             2222334555666764333   2   


Q ss_pred             hhHHHh-HHHhhCCCCCeEEEecCCC
Q psy2961          66 EEELRN-ISRDASIPKPKLALNCVGG   90 (202)
Q Consensus        66 ~~~~~~-~~~~~~~~~~d~vid~~g~   90 (202)
                      ..+... +.+....+++|+||.++|.
T Consensus       327 ~~~v~~~~~~i~~~g~id~vVh~AGv  352 (525)
T 3qp9_A          327 AEAAARLLAGVSDAHPLSAVLHLPPT  352 (525)
T ss_dssp             HHHHHHHHHTSCTTSCEEEEEECCCC
T ss_pred             HHHHHHHHHHHHhcCCCcEEEECCcC
Confidence            334444 4433333579999999983

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=97.88  E-value=2.2e-05  Score=58.30  Aligned_cols=80  Identities=15%  Similarity=0.201  Sum_probs=53.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceE-e--C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-F--T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v-~--~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .+.+|||+|++|++|..+++.+...|++|+.+.++.+..++..+.++..+.... +  |   .+++.. +.+... -+.+
T Consensus        33 ~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i  112 (279)
T 3ctm_A           33 KGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISDPKSVEETISQQEKDFGTI  112 (279)
T ss_dssp             TTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence            468999999999999999988888899999998887654333344444454321 1  3   233333 322111 1469


Q ss_pred             eEEEecCC
Q psy2961          82 KLALNCVG   89 (202)
Q Consensus        82 d~vid~~g   89 (202)
                      |++|.++|
T Consensus       113 d~li~~Ag  120 (279)
T 3ctm_A          113 DVFVANAG  120 (279)
T ss_dssp             SEEEECGG
T ss_pred             CEEEECCc
Confidence            99999886

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=97.88  E-value=4.8e-05  Score=55.97  Aligned_cols=77  Identities=12%  Similarity=0.095  Sum_probs=50.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcC--CceEe-C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG--ADYVF-T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg--~~~v~-~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .+.++||+|+++++|.++++.+...|++|+.+.++++..   .+..+++.  ...+. |   .+++.. +.+... .+++
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~g~i   87 (263)
T 3ak4_A           11 SGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAA---QAVVAGLENGGFAVEVDVTKRASVDAAMQKAIDALGGF   87 (263)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH---HHHHHTCTTCCEEEECCTTCHHHHHHHHHHHHHHHTCC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHH---HHHHHHHhcCCeEEEEeCCCHHHHHHHHHHHHHHcCCC
Confidence            478999999999999999999999999999888776531   22223332  22221 3   333333 322111 1479


Q ss_pred             eEEEecCC
Q psy2961          82 KLALNCVG   89 (202)
Q Consensus        82 d~vid~~g   89 (202)
                      |++|+++|
T Consensus        88 D~lv~~Ag   95 (263)
T 3ak4_A           88 DLLCANAG   95 (263)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999987

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=97.87  E-value=8.9e-05  Score=53.78  Aligned_cols=80  Identities=14%  Similarity=0.126  Sum_probs=50.4

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-------cEEEEecCcccHHHHHHHHHhcCCceE-e--C---hhHHHh-HHHhh
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGL-------KTINIVRNRDDIDKLKSYLKSLGADYV-F--T---EEELRN-ISRDA   76 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~-------~vi~~~~~~~~~~~~~~~~~~lg~~~v-~--~---~~~~~~-~~~~~   76 (202)
                      +.+|||+|++|++|..+++.+...|+       +|+.+.++++...+..+.++..+.... +  |   .+++.. +.+..
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   81 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIV   81 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCCHHHHHHHHHHHH
Confidence            56899999999999999988888898       888888776532222223333343211 1  2   233333 33221


Q ss_pred             C-CCCCeEEEecCCC
Q psy2961          77 S-IPKPKLALNCVGG   90 (202)
Q Consensus        77 ~-~~~~d~vid~~g~   90 (202)
                      . .+++|++|.++|.
T Consensus        82 ~~~g~id~li~~Ag~   96 (244)
T 2bd0_A           82 ERYGHIDCLVNNAGV   96 (244)
T ss_dssp             HHTSCCSEEEECCCC
T ss_pred             HhCCCCCEEEEcCCc
Confidence            1 1479999999873

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=97.87  E-value=9.4e-05  Score=53.74  Aligned_cols=100  Identities=11%  Similarity=0.039  Sum_probs=64.4

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCC-ceE-eChhHHHhHHHhh-CCCCC
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA-DYV-FTEEELRNISRDA-SIPKP   81 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~-~~v-~~~~~~~~~~~~~-~~~~~   81 (202)
                      ...+.++++||..|+|  .|..++.+++. +.+++++..+++......+.+...+. +.+ +...|.   .+.. .+.++
T Consensus        86 ~~~~~~~~~vldiG~G--~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~  159 (248)
T 2yvl_A           86 KLNLNKEKRVLEFGTG--SGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDF---KDAEVPEGIF  159 (248)
T ss_dssp             HTTCCTTCEEEEECCT--TSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCT---TTSCCCTTCB
T ss_pred             hcCCCCCCEEEEeCCC--ccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcCh---hhcccCCCcc
Confidence            3456899999999997  48888999988 77888777666532222222333443 111 111222   2222 33579


Q ss_pred             eEEEecCCCc-hH-HHHHHhcccCcEEEEEe
Q psy2961          82 KLALNCVGGN-SA-TNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        82 d~vid~~g~~-~~-~~~~~~l~~~G~~v~~g  110 (202)
                      |+|+...+.+ .+ ..+.+.|+++|+++...
T Consensus       160 D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  190 (248)
T 2yvl_A          160 HAAFVDVREPWHYLEKVHKSLMEGAPVGFLL  190 (248)
T ss_dssp             SEEEECSSCGGGGHHHHHHHBCTTCEEEEEE
T ss_pred             cEEEECCcCHHHHHHHHHHHcCCCCEEEEEe
Confidence            9999877755 33 34789999999999876

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=97.87  E-value=0.00011  Score=53.93  Aligned_cols=80  Identities=18%  Similarity=0.155  Sum_probs=51.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH---CCCcEEEEecCcccHHHHHHHHHhc--CCceE-e--C---hhHHHh-HHHhh-
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARH---WGLKTINIVRNRDDIDKLKSYLKSL--GADYV-F--T---EEELRN-ISRDA-   76 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~---~g~~vi~~~~~~~~~~~~~~~~~~l--g~~~v-~--~---~~~~~~-~~~~~-   76 (202)
                      .+.++||+|+++++|.++++.+..   .|++|+.+.++.+...+..+.+++.  +.... +  |   +++... +.+.. 
T Consensus         5 ~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   84 (259)
T 1oaa_A            5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVRE   84 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHh
Confidence            367899999999999998887776   8999999888766433323333332  32211 1  3   334444 43332 


Q ss_pred             --CCCCCe--EEEecCC
Q psy2961          77 --SIPKPK--LALNCVG   89 (202)
Q Consensus        77 --~~~~~d--~vid~~g   89 (202)
                        ..+++|  ++|+++|
T Consensus        85 ~~~~g~~d~~~lvnnAg  101 (259)
T 1oaa_A           85 LPRPEGLQRLLLINNAA  101 (259)
T ss_dssp             SCCCTTCCEEEEEECCC
T ss_pred             ccccccCCccEEEECCc
Confidence              223577  9999886

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=97.86  E-value=8.5e-05  Score=56.62  Aligned_cols=38  Identities=16%  Similarity=0.152  Sum_probs=33.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEe-cCccc
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIV-RNRDD   47 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~-~~~~~   47 (202)
                      .+.++||+|+++++|.++++.+...|++|+.++ ++.+.
T Consensus        45 ~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~   83 (328)
T 2qhx_A           45 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAE   83 (328)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHH
Confidence            468999999999999999999999999999988 76654

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=97.86  E-value=5.7e-05  Score=54.67  Aligned_cols=99  Identities=13%  Similarity=0.096  Sum_probs=62.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--cEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCCCeEEEe
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGL--KTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALN   86 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~--~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~vid   86 (202)
                      .+.+|||+|++|++|..+++.+...|+  +|+++.++++..    +....-+...+. |-.+...+.+..  .++|++|.
T Consensus        17 ~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~----~~~~~~~~~~~~~D~~d~~~~~~~~--~~~d~vi~   90 (242)
T 2bka_A           17 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTF----DEEAYKNVNQEVVDFEKLDDYASAF--QGHDVGFC   90 (242)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCC----CSGGGGGCEEEECCGGGGGGGGGGG--SSCSEEEE
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCc----cccccCCceEEecCcCCHHHHHHHh--cCCCEEEE
Confidence            367999999999999999999888999  999998876531    111111222222 323322244443  37999999


Q ss_pred             cCCCchH---------------HHHHHhccc--CcEEEEEeccCC
Q psy2961          87 CVGGNSA---------------TNLLRTLVS--KGVMVTYGGMSR  114 (202)
Q Consensus        87 ~~g~~~~---------------~~~~~~l~~--~G~~v~~g~~~~  114 (202)
                      ++|....               ..+++.+..  .+++|.++....
T Consensus        91 ~ag~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS~~~  135 (242)
T 2bka_A           91 CLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGA  135 (242)
T ss_dssp             CCCCCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred             CCCcccccCCcccceeeeHHHHHHHHHHHHHCCCCEEEEEccCcC
Confidence            9985421               123344433  368998886544

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=97.86  E-value=9.3e-05  Score=54.75  Aligned_cols=77  Identities=16%  Similarity=0.314  Sum_probs=50.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHH-HhcCCceEe--C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGADYVF--T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~v~--~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .|.++||+|+++++|.++++.+...|++|+.+.++++.    .+.+ +++.....+  |   +++... +.+... -+++
T Consensus         8 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   83 (270)
T 1yde_A            8 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESG----GRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRL   83 (270)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            57899999999999999999999999999988877653    2322 333221222  2   333333 322211 1479


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|+++|.
T Consensus        84 D~lv~nAg~   92 (270)
T 1yde_A           84 DCVVNNAGH   92 (270)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999873

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=97.86  E-value=3.6e-05  Score=56.91  Aligned_cols=77  Identities=16%  Similarity=0.137  Sum_probs=49.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-C---hhHHHh-HHHhhC-CCCCeE
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-T---EEELRN-ISRDAS-IPKPKL   83 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~---~~~~~~-~~~~~~-~~~~d~   83 (202)
                      .++++||+|+++++|.++++.+...|++|+.+.++.+    +.+.+.......+. |   .++... +.+... .+++|+
T Consensus        15 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~   90 (266)
T 3p19_A           15 MKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVE----RLKALNLPNTLCAQVDVTDKYTFDTAITRAEKIYGPADA   90 (266)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHH----HHHTTCCTTEEEEECCTTCHHHHHHHHHHHHHHHCSEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH----HHHHhhcCCceEEEecCCCHHHHHHHHHHHHHHCCCCCE
Confidence            4689999999999999999999999999999887654    22222111111111 2   333333 322211 147999


Q ss_pred             EEecCCC
Q psy2961          84 ALNCVGG   90 (202)
Q Consensus        84 vid~~g~   90 (202)
                      +|+++|.
T Consensus        91 lvnnAg~   97 (266)
T 3p19_A           91 IVNNAGM   97 (266)
T ss_dssp             EEECCCC
T ss_pred             EEECCCc
Confidence            9999984

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.86  E-value=0.00013  Score=53.54  Aligned_cols=76  Identities=17%  Similarity=0.200  Sum_probs=51.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe--C---hhHHHh-HHHhhC-CCCCe
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--T---EEELRN-ISRDAS-IPKPK   82 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~--~---~~~~~~-~~~~~~-~~~~d   82 (202)
                      .+.++||+|+++++|.++++.+...|++|+.+.++++.    .+..+++.. .++  |   +++... +.+... .+++|
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~----~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~g~iD   79 (256)
T 2d1y_A            5 AGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG----KEVAEAIGG-AFFQVDLEDERERVRFVEEAAYALGRVD   79 (256)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH----HHHHHHHTC-EEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhH----HHHHHHhhC-CEEEeeCCCHHHHHHHHHHHHHHcCCCC
Confidence            46899999999999999999999999999988887653    222233322 222  2   333333 332211 14799


Q ss_pred             EEEecCCC
Q psy2961          83 LALNCVGG   90 (202)
Q Consensus        83 ~vid~~g~   90 (202)
                      ++|+++|.
T Consensus        80 ~lv~~Ag~   87 (256)
T 2d1y_A           80 VLVNNAAI   87 (256)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999873

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=97.84  E-value=0.00022  Score=52.49  Aligned_cols=80  Identities=15%  Similarity=0.209  Sum_probs=52.9

Q ss_pred             CCCEEEEeCCC--cHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHH-hcCCceEe--C---hhHHHh-HHHhhC-CC
Q psy2961          10 PGDVVIQNGAN--SACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK-SLGADYVF--T---EEELRN-ISRDAS-IP   79 (202)
Q Consensus        10 ~g~~VlI~g~~--~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~-~lg~~~v~--~---~~~~~~-~~~~~~-~~   79 (202)
                      .+.++||+|++  +++|.++++.+...|++|+.+.+++ ...+..+.+. ..+...++  |   +++... +.+... -+
T Consensus         8 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~-~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   86 (265)
T 1qsg_A            8 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-KLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWP   86 (265)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST-TTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCS
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcH-HHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            46899999998  8999999999999999999988776 2222334443 23332222  3   334444 443322 24


Q ss_pred             CCeEEEecCCC
Q psy2961          80 KPKLALNCVGG   90 (202)
Q Consensus        80 ~~d~vid~~g~   90 (202)
                      ++|++|+++|.
T Consensus        87 ~iD~lv~~Ag~   97 (265)
T 1qsg_A           87 KFDGFVHSIGF   97 (265)
T ss_dssp             SEEEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            69999999873

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=97.84  E-value=0.00011  Score=54.14  Aligned_cols=81  Identities=11%  Similarity=0.074  Sum_probs=51.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc-cHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD-DIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~-~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~   80 (202)
                      .+.+|||+|+++++|..+++.+...|++|+.+++++. ...+..+.+++.+....+   |   .++... +.+... .++
T Consensus        25 ~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~  104 (267)
T 4iiu_A           25 MSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDAAGAQETLNAIVANGGNGRLLSFDVANREQCREVLEHEIAQHGA  104 (267)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            4679999999999999999999999999977665543 222233344444443222   2   333333 322211 157


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|++|.++|.
T Consensus       105 id~li~nAg~  114 (267)
T 4iiu_A          105 WYGVVSNAGI  114 (267)
T ss_dssp             CSEEEECCCC
T ss_pred             ccEEEECCCC
Confidence            9999999873

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=97.84  E-value=0.00012  Score=55.34  Aligned_cols=94  Identities=15%  Similarity=0.163  Sum_probs=61.1

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCCCeEEEecCCC
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNCVGG   90 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~vid~~g~   90 (202)
                      .+|+|+|++|.+|..+++.+...|.+|++++++++......+.+...+...+. |..+...+.+..  .++|+||.+++.
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~--~~~d~vi~~a~~   89 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELM--KKVDVVISALAF   89 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHH--TTCSEEEECCCG
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHH--cCCCEEEECCch
Confidence            47999999999999999998889999999998764211122233445665443 333333344444  469999999985


Q ss_pred             ch---HHHHHHhcccC---cEEE
Q psy2961          91 NS---ATNLLRTLVSK---GVMV  107 (202)
Q Consensus        91 ~~---~~~~~~~l~~~---G~~v  107 (202)
                      ..   ...+++.++..   .+++
T Consensus        90 ~~~~~~~~l~~aa~~~g~v~~~v  112 (318)
T 2r6j_A           90 PQILDQFKILEAIKVAGNIKRFL  112 (318)
T ss_dssp             GGSTTHHHHHHHHHHHCCCCEEE
T ss_pred             hhhHHHHHHHHHHHhcCCCCEEE
Confidence            42   23355554432   4666

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=97.84  E-value=8.6e-05  Score=54.61  Aligned_cols=78  Identities=15%  Similarity=0.204  Sum_probs=50.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCc--eE-eC---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD--YV-FT---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~--~v-~~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .|.++||+|+++++|.++++.+...|++|+.+.++.+..   .+..+++...  .+ .|   +++... +.+... -+++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i   82 (260)
T 1nff_A            6 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEG---KAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGL   82 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH---HHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH---HHHHHHhhcCceEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            478999999999999999999888999999988776532   1222333221  11 13   333333 332211 1479


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|+++|.
T Consensus        83 D~lv~~Ag~   91 (260)
T 1nff_A           83 HVLVNNAGI   91 (260)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999873

>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*

Probab=97.82  E-value=0.00022  Score=57.32  Aligned_cols=83  Identities=17%  Similarity=0.217  Sum_probs=54.8

Q ss_pred             CCCC--CEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCc---ccHHHHHHHHHhcCCceEe---C---hhHHHh-HHH
Q psy2961           8 LSPG--DVVIQNGANSACGQNVIQIARHWGL-KTINIVRNR---DDIDKLKSYLKSLGADYVF---T---EEELRN-ISR   74 (202)
Q Consensus         8 ~~~g--~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~---~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~   74 (202)
                      ++++  .++||+|++|++|..+++.+...|+ +++.+.++.   +...+..+.+++.|....+   |   .++... +.+
T Consensus       234 ~~~~~~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~  313 (496)
T 3mje_A          234 KRPPVHGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAALLAE  313 (496)
T ss_dssp             CCCCCCSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHT
T ss_pred             CCCCCCCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHH
Confidence            3455  8999999999999999988888999 455555542   2223344556667765333   2   344444 444


Q ss_pred             hhCCCCCeEEEecCCC
Q psy2961          75 DASIPKPKLALNCVGG   90 (202)
Q Consensus        75 ~~~~~~~d~vid~~g~   90 (202)
                      .....++|++|.+.|.
T Consensus       314 i~~~g~ld~vVh~AGv  329 (496)
T 3mje_A          314 LPEDAPLTAVFHSAGV  329 (496)
T ss_dssp             CCTTSCEEEEEECCCC
T ss_pred             HHHhCCCeEEEECCcc
Confidence            3333479999999874

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=97.82  E-value=6.3e-05  Score=55.24  Aligned_cols=38  Identities=18%  Similarity=0.146  Sum_probs=33.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCccc
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD   47 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~   47 (202)
                      .+.+|||+|++|++|..+++.+...|++|+.+.++.+.
T Consensus         6 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~   43 (264)
T 2pd6_A            6 RSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAA   43 (264)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHH
Confidence            46899999999999999999988999999998887653

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=97.82  E-value=8.8e-05  Score=55.00  Aligned_cols=96  Identities=14%  Similarity=0.112  Sum_probs=60.9

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHC--CCcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCCCeEEEecCC
Q psy2961          13 VVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNCVG   89 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~--g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~vid~~g   89 (202)
                      +|||+|++|.+|..+++.+...  |.+|+++.++++.    .+.+...+...+. |..+...+.+..  .++|+||.+++
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~----~~~~~~~~~~~~~~D~~d~~~~~~~~--~~~d~vi~~a~   74 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAK----AQALAAQGITVRQADYGDEAALTSAL--QGVEKLLLISS   74 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTT----CHHHHHTTCEEEECCTTCHHHHHHHT--TTCSEEEECC-
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHh----hhhhhcCCCeEEEcCCCCHHHHHHHH--hCCCEEEEeCC
Confidence            4899999999999999888877  9999999987663    3333344544433 333333344444  46899999987


Q ss_pred             Cc------hHHHHHHhccc-C-cEEEEEeccCC
Q psy2961          90 GN------SATNLLRTLVS-K-GVMVTYGGMSR  114 (202)
Q Consensus        90 ~~------~~~~~~~~l~~-~-G~~v~~g~~~~  114 (202)
                      ..      ....+++.++. + ++++.++....
T Consensus        75 ~~~~~~~~~~~~l~~a~~~~~~~~~v~~Ss~~~  107 (286)
T 2zcu_A           75 SEVGQRAPQHRNVINAAKAAGVKFIAYTSLLHA  107 (286)
T ss_dssp             -------CHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred             CCchHHHHHHHHHHHHHHHcCCCEEEEECCCCC
Confidence            52      12234554433 2 58888875443

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=97.80  E-value=3.6e-05  Score=56.05  Aligned_cols=75  Identities=7%  Similarity=0.038  Sum_probs=49.4

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEE-e--cCcccHHHHHHHHHhc-CCceEeChhHHHh-HHHhhC-CCCCeEE
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINI-V--RNRDDIDKLKSYLKSL-GADYVFTEEELRN-ISRDAS-IPKPKLA   84 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~-~--~~~~~~~~~~~~~~~l-g~~~v~~~~~~~~-~~~~~~-~~~~d~v   84 (202)
                      |.++||+|+++++|.++++.+...|++|+.+ .  ++++..   .+..+++ +.+ +.+.++... +.+... .+++|++
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r~~~~~---~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~g~iD~l   76 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAER---QRFESENPGTI-ALAEQKPERLVDATLQHGEAIDTI   76 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHH---HHHHHHSTTEE-ECCCCCGGGHHHHHGGGSSCEEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcCCHHHH---HHHHHHhCCCc-ccCHHHHHHHHHHHHHHcCCCCEE
Confidence            4689999999999999999999999998887 4  665431   2222344 332 335444333 332221 1479999


Q ss_pred             EecCC
Q psy2961          85 LNCVG   89 (202)
Q Consensus        85 id~~g   89 (202)
                      |+++|
T Consensus        77 v~~Ag   81 (244)
T 1zmo_A           77 VSNDY   81 (244)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            99987

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=97.80  E-value=0.00011  Score=53.73  Aligned_cols=76  Identities=16%  Similarity=0.254  Sum_probs=50.0

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCce-Ee--C---hhHHHh-HHHhhC-CCCCeE
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-VF--T---EEELRN-ISRDAS-IPKPKL   83 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-v~--~---~~~~~~-~~~~~~-~~~~d~   83 (202)
                      .++||+|+++++|.++++.+...|++|+.+.++.+..   .+..++++... .+  |   +++... +.+... .+++|+
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~   77 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERL---QELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWCNIDI   77 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHH---HHHHHHHCTTEEEEECCTTCHHHHHHHHHTSCTTTCCCCE
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH---HHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHhCCCCCE
Confidence            3689999999999999999999999999888776532   22233444321 11  3   233434 333222 247999


Q ss_pred             EEecCCC
Q psy2961          84 ALNCVGG   90 (202)
Q Consensus        84 vid~~g~   90 (202)
                      +|+++|.
T Consensus        78 lvnnAg~   84 (248)
T 3asu_A           78 LVNNAGL   84 (248)
T ss_dssp             EEECCCC
T ss_pred             EEECCCc
Confidence            9998873

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=97.80  E-value=0.00021  Score=57.36  Aligned_cols=84  Identities=15%  Similarity=0.232  Sum_probs=55.6

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCc-EEEEecCcc---cHHHHHHHHHhcCCceEe---C---hhHHHh-HHHh
Q psy2961           7 SLSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRD---DIDKLKSYLKSLGADYVF---T---EEELRN-ISRD   75 (202)
Q Consensus         7 ~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~-vi~~~~~~~---~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~   75 (202)
                      .++++.++||+|++|++|..+++.+...|++ ++.+.++..   ...+..+.+++.|....+   |   ..+... +...
T Consensus       222 ~~~~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~i  301 (486)
T 2fr1_A          222 EWKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGI  301 (486)
T ss_dssp             CCCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTS
T ss_pred             CcCCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHHHH
Confidence            3678899999999999999999888888996 677766653   122233445566654322   2   334444 4433


Q ss_pred             hCCCCCeEEEecCCC
Q psy2961          76 ASIPKPKLALNCVGG   90 (202)
Q Consensus        76 ~~~~~~d~vid~~g~   90 (202)
                      .....+|.||.+.|.
T Consensus       302 ~~~g~ld~VIh~AG~  316 (486)
T 2fr1_A          302 GDDVPLSAVFHAAAT  316 (486)
T ss_dssp             CTTSCEEEEEECCCC
T ss_pred             HhcCCCcEEEECCcc
Confidence            223468999999983

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=97.79  E-value=5.1e-05  Score=54.41  Aligned_cols=95  Identities=11%  Similarity=0.149  Sum_probs=60.0

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCCCeEEEecCCC
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNCVGG   90 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~vid~~g~   90 (202)
                      .+|||+|++|.+|..+++.+...|.+|+++.++++.    .+.+. .+...+. |-.+...+.+..  .++|+||.++|.
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~----~~~~~-~~~~~~~~Dl~d~~~~~~~~--~~~d~vi~~a~~   77 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEK----IKIEN-EHLKVKKADVSSLDEVCEVC--KGADAVISAFNP   77 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGG----CCCCC-TTEEEECCCTTCHHHHHHHH--TTCSEEEECCCC
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCccc----chhcc-CceEEEEecCCCHHHHHHHh--cCCCEEEEeCcC
Confidence            589999999999999999999999999999988753    11110 1122221 222322234433  368999999976


Q ss_pred             ch------------HHHHHHhcccC--cEEEEEeccC
Q psy2961          91 NS------------ATNLLRTLVSK--GVMVTYGGMS  113 (202)
Q Consensus        91 ~~------------~~~~~~~l~~~--G~~v~~g~~~  113 (202)
                      ..            ...+++.++..  .++|.++...
T Consensus        78 ~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~  114 (227)
T 3dhn_A           78 GWNNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGAG  114 (227)
T ss_dssp             ------CCSHHHHHHHHHHHHHHHTTCSEEEEECCST
T ss_pred             CCCChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCChh
Confidence            41            12245555443  4888887543

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=97.79  E-value=0.00015  Score=53.80  Aligned_cols=95  Identities=19%  Similarity=0.153  Sum_probs=62.0

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHC--CCcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCCCeEEEecCC
Q psy2961          13 VVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNCVG   89 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~--g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~vid~~g   89 (202)
                      +|||+|++|.+|..+++.+...  |.+|++++++++.    .+.+...+...+. |..+...+.+..  .++|+||.+++
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~----~~~l~~~~~~~~~~D~~d~~~l~~~~--~~~d~vi~~a~   75 (287)
T 2jl1_A            2 SIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEK----ASTLADQGVEVRHGDYNQPESLQKAF--AGVSKLLFISG   75 (287)
T ss_dssp             CEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTT----THHHHHTTCEEEECCTTCHHHHHHHT--TTCSEEEECCC
T ss_pred             eEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHH----HhHHhhcCCeEEEeccCCHHHHHHHH--hcCCEEEEcCC
Confidence            6999999999999999888877  9999999987763    3334344554433 333333344444  36899999987


Q ss_pred             Cch--------HHHHHHhcccC--cEEEEEeccC
Q psy2961          90 GNS--------ATNLLRTLVSK--GVMVTYGGMS  113 (202)
Q Consensus        90 ~~~--------~~~~~~~l~~~--G~~v~~g~~~  113 (202)
                      ...        ...+++.++..  ++++.++...
T Consensus        76 ~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~  109 (287)
T 2jl1_A           76 PHYDNTLLIVQHANVVKAARDAGVKHIAYTGYAF  109 (287)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHTTCSEEEEEEETT
T ss_pred             CCcCchHHHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence            421        12244444433  4888887543

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=97.79  E-value=0.00012  Score=54.12  Aligned_cols=78  Identities=18%  Similarity=0.280  Sum_probs=50.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCC--c-eEe--C---hhHHHh-HHHhhC-CC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA--D-YVF--T---EEELRN-ISRDAS-IP   79 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~--~-~v~--~---~~~~~~-~~~~~~-~~   79 (202)
                      .+.+|||+|++|++|..+++.+...|++|+.+.++.+..   .+..++++.  . .++  |   ++++.. +.+... .+
T Consensus        15 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   91 (278)
T 2bgk_A           15 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHG---QKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHG   91 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHH---HHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhHH---HHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            468999999999999999999999999999887765421   222233322  1 111  2   233333 322111 14


Q ss_pred             CCeEEEecCCC
Q psy2961          80 KPKLALNCVGG   90 (202)
Q Consensus        80 ~~d~vid~~g~   90 (202)
                      ++|++|.++|.
T Consensus        92 ~id~li~~Ag~  102 (278)
T 2bgk_A           92 KLDIMFGNVGV  102 (278)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCcc
Confidence            79999998873

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=97.79  E-value=0.00037  Score=51.29  Aligned_cols=72  Identities=18%  Similarity=0.181  Sum_probs=48.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-C---hhHHHh-HHHhhC-CCCCeE
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-T---EEELRN-ISRDAS-IPKPKL   83 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~---~~~~~~-~~~~~~-~~~~d~   83 (202)
                      .+.++||+|+++++|..+++.+...|++|+.+.++++.         ......+. |   .+++.. +.+... -+++|+
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~---------~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~   77 (264)
T 2dtx_A            7 RDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPG---------EAKYDHIECDVTNPDQVKASIDHIFKEYGSISV   77 (264)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCC---------SCSSEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCccc---------CCceEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            46899999999999999999999999999988877652         11112111 2   333333 322211 147999


Q ss_pred             EEecCCC
Q psy2961          84 ALNCVGG   90 (202)
Q Consensus        84 vid~~g~   90 (202)
                      +|+++|.
T Consensus        78 lv~~Ag~   84 (264)
T 2dtx_A           78 LVNNAGI   84 (264)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999873

>4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A*

Probab=97.78  E-value=0.00025  Score=55.75  Aligned_cols=83  Identities=17%  Similarity=0.070  Sum_probs=52.6

Q ss_pred             CCCCCEEEEeCCCcHHHHH--HHHHHHHCCCcEEEEecCcccH------------HHHHHHHHhcCCceEe---C---hh
Q psy2961           8 LSPGDVVIQNGANSACGQN--VIQIARHWGLKTINIVRNRDDI------------DKLKSYLKSLGADYVF---T---EE   67 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~--~i~la~~~g~~vi~~~~~~~~~------------~~~~~~~~~lg~~~v~---~---~~   67 (202)
                      ...|+++||+|+++++|.+  .+......|++|+.+.++.+..            ....+.+++.|.....   |   .+
T Consensus        57 ~~~gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvtd~~  136 (418)
T 4eue_A           57 FRGPKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKKGLVAKNFIEDAFSNE  136 (418)
T ss_dssp             CCCCSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTCHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecCcchhhhcccccccchHHHHHHHHHHcCCcEEEEEeeCCCHH
Confidence            4678999999999999998  5555556699999888754321            1122344556654322   2   33


Q ss_pred             HHHh-HHHhhC-CCCCeEEEecCCC
Q psy2961          68 ELRN-ISRDAS-IPKPKLALNCVGG   90 (202)
Q Consensus        68 ~~~~-~~~~~~-~~~~d~vid~~g~   90 (202)
                      +... +.+... -+++|++|+++|.
T Consensus       137 ~v~~~v~~i~~~~G~IDiLVnNAG~  161 (418)
T 4eue_A          137 TKDKVIKYIKDEFGKIDLFVYSLAA  161 (418)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCcc
Confidence            3333 333221 2579999998875

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=97.77  E-value=0.00012  Score=53.81  Aligned_cols=80  Identities=13%  Similarity=0.118  Sum_probs=50.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHH-HHHHhcCCce-Ee--C---hhHHHh-HHHhhC-CCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLK-SYLKSLGADY-VF--T---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~-~~~~~lg~~~-v~--~---~~~~~~-~~~~~~-~~~   80 (202)
                      .+.++||+|+++++|.++++.+...|++|+.+.++++...+.. +.+++.+... ++  |   .++... +.+... .++
T Consensus         6 ~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   85 (264)
T 3i4f_A            6 FVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEAMSHFGK   85 (264)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             ccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            4679999999999999999999999999998877765321111 1122223221 11  2   333333 332211 147


Q ss_pred             CeEEEecCC
Q psy2961          81 PKLALNCVG   89 (202)
Q Consensus        81 ~d~vid~~g   89 (202)
                      +|++|.++|
T Consensus        86 id~lv~~Ag   94 (264)
T 3i4f_A           86 IDFLINNAG   94 (264)
T ss_dssp             CCEEECCCC
T ss_pred             CCEEEECCc
Confidence            999999998

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=97.77  E-value=0.00028  Score=52.54  Aligned_cols=80  Identities=11%  Similarity=0.164  Sum_probs=52.1

Q ss_pred             CCCEEEEeCCC--cHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHh-cCCceEe--C---hhHHHh-HHHhhC-CC
Q psy2961          10 PGDVVIQNGAN--SACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS-LGADYVF--T---EEELRN-ISRDAS-IP   79 (202)
Q Consensus        10 ~g~~VlI~g~~--~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~-lg~~~v~--~---~~~~~~-~~~~~~-~~   79 (202)
                      .|.++||+|++  +++|.++++.+...|++|+.+.++++ ..+..+.+.+ .+...++  |   +++... +.+... -+
T Consensus        20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   98 (285)
T 2p91_A           20 EGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPK-LEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEENWG   98 (285)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGG-GHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHH-HHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            46899999998  89999999998889999999887764 2223444432 3322222  3   233333 332211 14


Q ss_pred             CCeEEEecCCC
Q psy2961          80 KPKLALNCVGG   90 (202)
Q Consensus        80 ~~d~vid~~g~   90 (202)
                      ++|++|+++|.
T Consensus        99 ~iD~lv~~Ag~  109 (285)
T 2p91_A           99 SLDIIVHSIAY  109 (285)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999873

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=97.76  E-value=0.00016  Score=53.08  Aligned_cols=81  Identities=14%  Similarity=0.173  Sum_probs=52.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHH-hcCCceE-e--C---hhHHHh-HHHhhC-CCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK-SLGADYV-F--T---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~-~lg~~~v-~--~---~~~~~~-~~~~~~-~~~   80 (202)
                      .+.+|||+|++|++|..+++.+...|++|+.+.++.+...+..+.+. +.+.... +  |   .+++.. +.+... -++
T Consensus        13 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   92 (265)
T 1h5q_A           13 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLGP   92 (265)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHSCS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence            46789999999999999999988899999999886654322233332 2343321 1  3   233333 333211 246


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|++|.++|.
T Consensus        93 id~li~~Ag~  102 (265)
T 1h5q_A           93 ISGLIANAGV  102 (265)
T ss_dssp             EEEEEECCCC
T ss_pred             CCEEEECCCc
Confidence            9999999874

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=97.76  E-value=0.00011  Score=57.67  Aligned_cols=82  Identities=15%  Similarity=0.144  Sum_probs=53.4

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHH-CCCcEEEEecCcccHHH------------HHHHHHhcCCceEe---C---hhHH
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARH-WGLKTINIVRNRDDIDK------------LKSYLKSLGADYVF---T---EEEL   69 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~-~g~~vi~~~~~~~~~~~------------~~~~~~~lg~~~v~---~---~~~~   69 (202)
                      +.|+++||+|+++|+|.+++..+.. .|++|+.+.++.+...+            ..+.+++.|.....   |   .++.
T Consensus        59 ~~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~Dvtd~~~v  138 (422)
T 3s8m_A           59 DGPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGDAFSDAAR  138 (422)
T ss_dssp             SSCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHHH
T ss_pred             cCCCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcEEEEEecCCCHHHH
Confidence            3578999999999999998887777 99999988776543211            12445566654322   2   3333


Q ss_pred             Hh-HHHhhC-C-CCCeEEEecCCC
Q psy2961          70 RN-ISRDAS-I-PKPKLALNCVGG   90 (202)
Q Consensus        70 ~~-~~~~~~-~-~~~d~vid~~g~   90 (202)
                      .. +..... - +++|++|+++|.
T Consensus       139 ~~~v~~i~~~~~G~IDiLVNNAG~  162 (422)
T 3s8m_A          139 AQVIELIKTEMGGQVDLVVYSLAS  162 (422)
T ss_dssp             HHHHHHHHHHSCSCEEEEEECCCC
T ss_pred             HHHHHHHHHHcCCCCCEEEEcCcc
Confidence            33 332221 1 479999998875

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=97.76  E-value=9.8e-05  Score=61.03  Aligned_cols=81  Identities=16%  Similarity=0.190  Sum_probs=48.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEec---------CcccHHHHHHHHHhcCCceEeCh---hHHHh-HHHhh
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVR---------NRDDIDKLKSYLKSLGADYVFTE---EELRN-ISRDA   76 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~---------~~~~~~~~~~~~~~lg~~~v~~~---~~~~~-~~~~~   76 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.+         +.+..++..+.+++.+...+.|.   .+... +.+..
T Consensus        18 ~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~D~~d~~~~~~~~~~~~   97 (613)
T 3oml_A           18 DGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGEAVADYNSVIDGAKVIETAI   97 (613)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--------------CHHHHHHHHHHTTCCEEECCCCGGGHHHHHC---
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcccccccCCHHHHHHHHHHHHHhCCeEEEEeCCHHHHHHHHHHHH
Confidence            5789999999999999999999999999988765         33433333445555666655553   33333 33222


Q ss_pred             C-CCCCeEEEecCCC
Q psy2961          77 S-IPKPKLALNCVGG   90 (202)
Q Consensus        77 ~-~~~~d~vid~~g~   90 (202)
                      . -+.+|++|+++|.
T Consensus        98 ~~~g~iDiLVnnAGi  112 (613)
T 3oml_A           98 KAFGRVDILVNNAGI  112 (613)
T ss_dssp             -------CEECCCCC
T ss_pred             HHCCCCcEEEECCCC
Confidence            1 1469999999983

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=97.75  E-value=0.00012  Score=53.78  Aligned_cols=81  Identities=12%  Similarity=0.144  Sum_probs=51.9

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCC---CcEEEEecCcccHHHHHHHHHhcCCce-Ee--C---hhHHHh-HH---Hh
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWG---LKTINIVRNRDDIDKLKSYLKSLGADY-VF--T---EEELRN-IS---RD   75 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g---~~vi~~~~~~~~~~~~~~~~~~lg~~~-v~--~---~~~~~~-~~---~~   75 (202)
                      -.+.+|||+|++|++|..+++.+...|   ++|+.+.++.+..+ ..+.+.+.+... ++  |   .+++.. +.   +.
T Consensus        19 ~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~-~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   97 (267)
T 1sny_A           19 SHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAK-ELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGV   97 (267)
T ss_dssp             -CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCH-HHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhH-HHHHhhccCCceEEEEecCCChHHHHHHHHHHHHh
Confidence            356799999999999999999999899   89999988776432 222332223221 11  2   333333 32   22


Q ss_pred             hCCCCCeEEEecCCC
Q psy2961          76 ASIPKPKLALNCVGG   90 (202)
Q Consensus        76 ~~~~~~d~vid~~g~   90 (202)
                      .+..++|++|.++|.
T Consensus        98 ~g~~~id~li~~Ag~  112 (267)
T 1sny_A           98 TKDQGLNVLFNNAGI  112 (267)
T ss_dssp             HGGGCCSEEEECCCC
T ss_pred             cCCCCccEEEECCCc
Confidence            221269999999873

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.75  E-value=0.0001  Score=53.49  Aligned_cols=76  Identities=24%  Similarity=0.267  Sum_probs=50.9

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCC--CcEEEEecCcccHHHHHHHHHhc-CCce-Ee--C---hhHHHh-HH---HhhC
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWG--LKTINIVRNRDDIDKLKSYLKSL-GADY-VF--T---EEELRN-IS---RDAS   77 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g--~~vi~~~~~~~~~~~~~~~~~~l-g~~~-v~--~---~~~~~~-~~---~~~~   77 (202)
                      +.+|||+|++|++|..+++.+...|  ++|+.+.++.+.    .+.+.++ +... ++  |   .+++.. +.   +..+
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~----~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   78 (250)
T 1yo6_A            3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEK----ATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVG   78 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGG----CHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHG
T ss_pred             CCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHH----HHHHHhccCCceEEEEeecCCHHHHHHHHHHHHHhcC
Confidence            5789999999999999999999999  899998887764    3444444 2221 11  2   233333 32   2222


Q ss_pred             CCCCeEEEecCCC
Q psy2961          78 IPKPKLALNCVGG   90 (202)
Q Consensus        78 ~~~~d~vid~~g~   90 (202)
                      ..++|++|.++|.
T Consensus        79 ~~~id~li~~Ag~   91 (250)
T 1yo6_A           79 SDGLSLLINNAGV   91 (250)
T ss_dssp             GGCCCEEEECCCC
T ss_pred             CCCCcEEEECCcc
Confidence            1279999998873

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=97.74  E-value=9.1e-05  Score=54.90  Aligned_cols=79  Identities=13%  Similarity=0.137  Sum_probs=49.5

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcC-CceE-eC---hhHHHh-HHHhhC-CCCCeEE
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG-ADYV-FT---EEELRN-ISRDAS-IPKPKLA   84 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg-~~~v-~~---~~~~~~-~~~~~~-~~~~d~v   84 (202)
                      .++||+|+++++|.++++.+...|++|+.+.++++..++..+.+...+ ...+ .|   .++... +.+... -+++|++
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l  101 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLPEEFATLRGL  101 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHTCCGGGSSCCEE
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            789999999999999999999999999998887653222122221111 1111 13   233333 332211 1468999


Q ss_pred             EecCCC
Q psy2961          85 LNCVGG   90 (202)
Q Consensus        85 id~~g~   90 (202)
                      |+++|.
T Consensus       102 vnnAG~  107 (272)
T 2nwq_A          102 INNAGL  107 (272)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999873

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=97.74  E-value=0.00016  Score=53.27  Aligned_cols=81  Identities=15%  Similarity=0.149  Sum_probs=53.3

Q ss_pred             CCCEEEEeCCC--cHHHHHHHHHHHHCCCcEEEEecCcccH-HHHHHHHH-hcCCceEe---C---hhHHHh-HHHhhC-
Q psy2961          10 PGDVVIQNGAN--SACGQNVIQIARHWGLKTINIVRNRDDI-DKLKSYLK-SLGADYVF---T---EEELRN-ISRDAS-   77 (202)
Q Consensus        10 ~g~~VlI~g~~--~~vG~~~i~la~~~g~~vi~~~~~~~~~-~~~~~~~~-~lg~~~v~---~---~~~~~~-~~~~~~-   77 (202)
                      .|.++||+|++  +++|..+++.+...|++|+.+.++.+.. .+..+.+. ..+....+   |   .++... +.+... 
T Consensus        19 ~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   98 (267)
T 3gdg_A           19 KGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGIKAKAYKCQVDSYESCEKLVKDVVAD   98 (267)
T ss_dssp             TTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSSSHHHHHHHHHHHHHCCCEECCBCCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcchhHHHHHHHHHHhcCCceeEEecCCCCHHHHHHHHHHHHHH
Confidence            47899999999  8999999999999999999988776543 22333332 33443222   2   333333 332211 


Q ss_pred             CCCCeEEEecCCC
Q psy2961          78 IPKPKLALNCVGG   90 (202)
Q Consensus        78 ~~~~d~vid~~g~   90 (202)
                      .+++|++|.++|.
T Consensus        99 ~g~id~li~nAg~  111 (267)
T 3gdg_A           99 FGQIDAFIANAGA  111 (267)
T ss_dssp             TSCCSEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence            2579999999873

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=97.74  E-value=0.00023  Score=53.72  Aligned_cols=95  Identities=11%  Similarity=0.147  Sum_probs=60.4

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCc-ccH-HHHHHH---HHhcCCceEe-ChhHHHhHHHhhCCCCCeEE
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR-DDI-DKLKSY---LKSLGADYVF-TEEELRNISRDASIPKPKLA   84 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~-~~~-~~~~~~---~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~v   84 (202)
                      ..+|+|+|++|.+|..+++.+...|.+|++++++. +.. .++.+.   +...+...+. |..+...+.+..  .++|+|
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~--~~~d~v   81 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVL--KQVDIV   81 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHH--TTCSEE
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHH--cCCCEE
Confidence            45799999999999999998888999999998875 100 012222   2334555443 433433344444  468999


Q ss_pred             EecCCCch---HHHHHHhcccC---cEEE
Q psy2961          85 LNCVGGNS---ATNLLRTLVSK---GVMV  107 (202)
Q Consensus        85 id~~g~~~---~~~~~~~l~~~---G~~v  107 (202)
                      |.+++...   ...+++.+...   +++|
T Consensus        82 i~~a~~~~~~~~~~l~~aa~~~g~v~~~v  110 (321)
T 3c1o_A           82 ISALPFPMISSQIHIINAIKAAGNIKRFL  110 (321)
T ss_dssp             EECCCGGGSGGGHHHHHHHHHHCCCCEEE
T ss_pred             EECCCccchhhHHHHHHHHHHhCCccEEe
Confidence            99998542   23355555433   4776

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=97.74  E-value=0.00045  Score=56.99  Aligned_cols=78  Identities=17%  Similarity=0.178  Sum_probs=51.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---Ch-hHHHh-HHHhhC-CCCCeE
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TE-EELRN-ISRDAS-IPKPKL   83 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~~-~~~~~-~~~~~~-~~~~d~   83 (202)
                      .|++++|+|+++++|.++++.+...|++|+.......  ++..+.+++.|...+.   |- .+... +.+... -+.+|+
T Consensus       321 ~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~--~~~~~~i~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~G~iDi  398 (604)
T 2et6_A          321 KDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFKDA--TKTVDEIKAAGGEAWPDQHDVAKDSEAIIKNVIDKYGTIDI  398 (604)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC--HHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCeEEEECcchHHHHHHHHHHHHCCCEEEEEeCccH--HHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHHHhcCCCCE
Confidence            4789999999999999999999999999887654322  2234455555654333   32 22222 222211 157999


Q ss_pred             EEecCC
Q psy2961          84 ALNCVG   89 (202)
Q Consensus        84 vid~~g   89 (202)
                      +|+++|
T Consensus       399 LVnNAG  404 (604)
T 2et6_A          399 LVNNAG  404 (604)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            999988

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=97.73  E-value=6.9e-05  Score=53.10  Aligned_cols=100  Identities=15%  Similarity=0.102  Sum_probs=65.9

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHh-HHHhhCCCCCe
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRN-ISRDASIPKPK   82 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~-~~~~~~~~~~d   82 (202)
                      ...++++++||-.|+|  .|..+..+++. +.+++++..+++......+.++.++...+- ...|..+ ..   ....+|
T Consensus        72 ~l~~~~~~~vLdiG~G--~G~~~~~la~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~~~D  145 (210)
T 3lbf_A           72 LLELTPQSRVLEIGTG--SGYQTAILAHL-VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQ---ARAPFD  145 (210)
T ss_dssp             HTTCCTTCEEEEECCT--TSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG---GGCCEE
T ss_pred             hcCCCCCCEEEEEcCC--CCHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCc---cCCCcc
Confidence            4567899999999997  47888888888 788888887776433333344445543221 1122222 11   125799


Q ss_pred             EEEecCCCchHH-HHHHhcccCcEEEEEe
Q psy2961          83 LALNCVGGNSAT-NLLRTLVSKGVMVTYG  110 (202)
Q Consensus        83 ~vid~~g~~~~~-~~~~~l~~~G~~v~~g  110 (202)
                      +|+....-.... .+.+.|+++|+++..-
T Consensus       146 ~i~~~~~~~~~~~~~~~~L~pgG~lv~~~  174 (210)
T 3lbf_A          146 AIIVTAAPPEIPTALMTQLDEGGILVLPV  174 (210)
T ss_dssp             EEEESSBCSSCCTHHHHTEEEEEEEEEEE
T ss_pred             EEEEccchhhhhHHHHHhcccCcEEEEEE
Confidence            999876555544 4789999999998865

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=97.72  E-value=0.00015  Score=54.20  Aligned_cols=79  Identities=6%  Similarity=0.043  Sum_probs=49.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHh-cCCceE-eChhHHHhHHHhhCCCCCeEEEec
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS-LGADYV-FTEEELRNISRDASIPKPKLALNC   87 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~-lg~~~v-~~~~~~~~~~~~~~~~~~d~vid~   87 (202)
                      +|.+++|+|++|++|.+++..+...|++|+.+.++.+..++..+.+.. .+...+ .|-.+..++.+..  ..+|++|++
T Consensus       118 ~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~--~~~DvlVn~  195 (287)
T 1lu9_A          118 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAV--KGAHFVFTA  195 (287)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHT--TTCSEEEEC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHH--HhCCEEEEC
Confidence            678999999888999999999999999977777765432222222222 132222 1221222233333  347999999


Q ss_pred             CCC
Q psy2961          88 VGG   90 (202)
Q Consensus        88 ~g~   90 (202)
                      +|.
T Consensus       196 ag~  198 (287)
T 1lu9_A          196 GAI  198 (287)
T ss_dssp             CCT
T ss_pred             CCc
Confidence            973

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=97.72  E-value=6.8e-05  Score=54.71  Aligned_cols=73  Identities=15%  Similarity=0.103  Sum_probs=49.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeC---hhHHHh-HHHhhC-CCCCeEE
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT---EEELRN-ISRDAS-IPKPKLA   84 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~---~~~~~~-~~~~~~-~~~~d~v   84 (202)
                      .+.++||+|+++++|.++++.+...|++|+.+.++++.    .+.+.  +  ...|   +++... +.+... .+++|++
T Consensus        14 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~----~~~~~--~--~~~D~~~~~~~~~~~~~~~~~~g~id~l   85 (247)
T 1uzm_A           14 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGA----PKGLF--G--VEVDVTDSDAVDRAFTAVEEHQGPVEVL   85 (247)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCC----CTTSE--E--EECCTTCHHHHHHHHHHHHHHHSSCSEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHH----HHHhc--C--eeccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            46899999999999999999999999999998887653    11111  1  2223   333333 322211 1478999


Q ss_pred             EecCCC
Q psy2961          85 LNCVGG   90 (202)
Q Consensus        85 id~~g~   90 (202)
                      |+++|.
T Consensus        86 v~~Ag~   91 (247)
T 1uzm_A           86 VSNAGL   91 (247)
T ss_dssp             EEECSC
T ss_pred             EECCCC
Confidence            999874

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=97.72  E-value=0.00015  Score=52.20  Aligned_cols=74  Identities=18%  Similarity=0.291  Sum_probs=48.4

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCc--eE-eC---hhHHHh-HHHhhCCCCCeEE
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD--YV-FT---EEELRN-ISRDASIPKPKLA   84 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~--~v-~~---~~~~~~-~~~~~~~~~~d~v   84 (202)
                      ++|||+|+++++|.++++.+...|++|+.+.++++.   ..+..++++..  .+ .|   .++... +.+..  ..+|++
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~---~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~--~~~d~l   76 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSESK---LSTVTNCLSNNVGYRARDLASHQEVEQLFEQLD--SIPSTV   76 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHH---HHHHHHTCSSCCCEEECCTTCHHHHHHHHHSCS--SCCSEE
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHH---HHHHHHHHhhccCeEeecCCCHHHHHHHHHHHh--hcCCEE
Confidence            368999999999999999999999999998887653   12333444332  11 13   223333 32221  235999


Q ss_pred             EecCCC
Q psy2961          85 LNCVGG   90 (202)
Q Consensus        85 id~~g~   90 (202)
                      |.++|.
T Consensus        77 v~~Ag~   82 (230)
T 3guy_A           77 VHSAGS   82 (230)
T ss_dssp             EECCCC
T ss_pred             EEeCCc
Confidence            999873

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=97.71  E-value=9.8e-05  Score=53.94  Aligned_cols=73  Identities=21%  Similarity=0.266  Sum_probs=49.7

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceE-eCh-hHHHhHHHhhCCCCCeEEEe
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTE-EELRNISRDASIPKPKLALN   86 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v-~~~-~~~~~~~~~~~~~~~d~vid   86 (202)
                      -.|.+|||+|++|++|.++++.+...|++|+.+.++++       .+++++...+ .|- ++...+.+..  .++|++|+
T Consensus        17 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~-------~~~~~~~~~~~~D~~~~~~~~~~~~--~~iD~lv~   87 (249)
T 1o5i_A           17 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEE-------LLKRSGHRYVVCDLRKDLDLLFEKV--KEVDILVL   87 (249)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH-------HHHHTCSEEEECCTTTCHHHHHHHS--CCCSEEEE
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHH-------HHHhhCCeEEEeeHHHHHHHHHHHh--cCCCEEEE
Confidence            46889999999999999999999999999988887653       2333442222 222 2333322222  27999999


Q ss_pred             cCCC
Q psy2961          87 CVGG   90 (202)
Q Consensus        87 ~~g~   90 (202)
                      ++|.
T Consensus        88 ~Ag~   91 (249)
T 1o5i_A           88 NAGG   91 (249)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9873

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=97.71  E-value=0.00017  Score=55.22  Aligned_cols=77  Identities=9%  Similarity=0.165  Sum_probs=50.8

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHC-CC-cEEEEecCcccHHHHHHHH-Hhc---CCceEe-ChhHHHhHHHhhCCCCC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHW-GL-KTINIVRNRDDIDKLKSYL-KSL---GADYVF-TEEELRNISRDASIPKP   81 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~-g~-~vi~~~~~~~~~~~~~~~~-~~l---g~~~v~-~~~~~~~~~~~~~~~~~   81 (202)
                      -.+.+|||+|++|.+|..+++.+... |. +|+++.++++.    .+.+ +.+   +...+. |-.+...+.+..  .++
T Consensus        19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~----~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~--~~~   92 (344)
T 2gn4_A           19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELK----QSEMAMEFNDPRMRFFIGDVRDLERLNYAL--EGV   92 (344)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHH----HHHHHHHHCCTTEEEEECCTTCHHHHHHHT--TTC
T ss_pred             hCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhh----HHHHHHHhcCCCEEEEECCCCCHHHHHHHH--hcC
Confidence            45789999999999999999888877 98 88888876542    2222 223   222222 323332244444  378


Q ss_pred             eEEEecCCCc
Q psy2961          82 KLALNCVGGN   91 (202)
Q Consensus        82 d~vid~~g~~   91 (202)
                      |+||.+++..
T Consensus        93 D~Vih~Aa~~  102 (344)
T 2gn4_A           93 DICIHAAALK  102 (344)
T ss_dssp             SEEEECCCCC
T ss_pred             CEEEECCCCC
Confidence            9999999743

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=97.69  E-value=7e-05  Score=53.25  Aligned_cols=101  Identities=22%  Similarity=0.257  Sum_probs=65.3

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCC--CcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHh-HHHhhCCCC
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWG--LKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRN-ISRDASIPK   80 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g--~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~-~~~~~~~~~   80 (202)
                      ...+.++++||..|+|  .|..+..+++..|  .+++++..+++......+.+...+.+.+. ...+... ..   ....
T Consensus        72 ~~~~~~~~~vLdiG~G--~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~~  146 (215)
T 2yxe_A           72 LLDLKPGMKVLEIGTG--CGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYE---PLAP  146 (215)
T ss_dssp             HTTCCTTCEEEEECCT--TSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCG---GGCC
T ss_pred             hhCCCCCCEEEEECCC--ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC---CCCC
Confidence            3467899999999997  4888899999886  67888776665322222333334433221 1122212 21   1257


Q ss_pred             CeEEEecCCCchHH-HHHHhcccCcEEEEEe
Q psy2961          81 PKLALNCVGGNSAT-NLLRTLVSKGVMVTYG  110 (202)
Q Consensus        81 ~d~vid~~g~~~~~-~~~~~l~~~G~~v~~g  110 (202)
                      +|+|+.+..-.... .+.+.|+++|+++..-
T Consensus       147 fD~v~~~~~~~~~~~~~~~~L~pgG~lv~~~  177 (215)
T 2yxe_A          147 YDRIYTTAAGPKIPEPLIRQLKDGGKLLMPV  177 (215)
T ss_dssp             EEEEEESSBBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             eeEEEECCchHHHHHHHHHHcCCCcEEEEEE
Confidence            99999877655543 4789999999998875

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=97.69  E-value=0.00043  Score=52.53  Aligned_cols=103  Identities=16%  Similarity=0.117  Sum_probs=62.2

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHh-cC--CceE--eChhHHHhHHHhhCCCCCe
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS-LG--ADYV--FTEEELRNISRDASIPKPK   82 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~-lg--~~~v--~~~~~~~~~~~~~~~~~~d   82 (202)
                      .-++.+|||+|++|.+|..+++.+...|++|+++.++.+......+.++. .+  ...+  .|-.+...+.+..  .++|
T Consensus         8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~--~~~d   85 (342)
T 1y1p_A            8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVI--KGAA   85 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTT--TTCS
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHH--cCCC
Confidence            44678999999999999999998888999999998876532111112111 12  2222  1322211133333  3789


Q ss_pred             EEEecCCCch---------------HHHHHHhcc--c-CcEEEEEecc
Q psy2961          83 LALNCVGGNS---------------ATNLLRTLV--S-KGVMVTYGGM  112 (202)
Q Consensus        83 ~vid~~g~~~---------------~~~~~~~l~--~-~G~~v~~g~~  112 (202)
                      +||.+++...               ...+++.+.  . .+++|.+++.
T Consensus        86 ~vih~A~~~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS~  133 (342)
T 1y1p_A           86 GVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSST  133 (342)
T ss_dssp             EEEECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCG
T ss_pred             EEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeccH
Confidence            9999987431               112344443  2 3789988754

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.69  E-value=0.00021  Score=47.28  Aligned_cols=78  Identities=14%  Similarity=0.112  Sum_probs=55.6

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCCCeEEEecCC
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNCVG   89 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~vid~~g   89 (202)
                      ..+|+|.|+| .+|..+++.+...|.+|+++..+++    +.+.+++.+...+. |..+...+.+. .-.++|++|-+++
T Consensus         6 ~~~v~I~G~G-~iG~~la~~L~~~g~~V~~id~~~~----~~~~~~~~~~~~~~gd~~~~~~l~~~-~~~~~d~vi~~~~   79 (141)
T 3llv_A            6 RYEYIVIGSE-AAGVGLVRELTAAGKKVLAVDKSKE----KIELLEDEGFDAVIADPTDESFYRSL-DLEGVSAVLITGS   79 (141)
T ss_dssp             CCSEEEECCS-HHHHHHHHHHHHTTCCEEEEESCHH----HHHHHHHTTCEEEECCTTCHHHHHHS-CCTTCSEEEECCS
T ss_pred             CCEEEEECCC-HHHHHHHHHHHHCCCeEEEEECCHH----HHHHHHHCCCcEEECCCCCHHHHHhC-CcccCCEEEEecC
Confidence            4689999997 8999999999999999998887665    56777777766544 32222223332 2357899999999


Q ss_pred             CchHH
Q psy2961          90 GNSAT   94 (202)
Q Consensus        90 ~~~~~   94 (202)
                      .....
T Consensus        80 ~~~~n   84 (141)
T 3llv_A           80 DDEFN   84 (141)
T ss_dssp             CHHHH
T ss_pred             CHHHH
Confidence            65443

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.69  E-value=0.0006  Score=48.87  Aligned_cols=113  Identities=11%  Similarity=0.096  Sum_probs=67.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVG   89 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~g   89 (202)
                      .|.+|||.|+| .+|...++.+...|++|++++.....   ....+.+.+.-..+. .++..  +.  -.++|+||-+++
T Consensus        30 ~gk~VLVVGgG-~va~~ka~~Ll~~GA~VtVvap~~~~---~l~~l~~~~~i~~i~-~~~~~--~d--L~~adLVIaAT~  100 (223)
T 3dfz_A           30 KGRSVLVVGGG-TIATRRIKGFLQEGAAITVVAPTVSA---EINEWEAKGQLRVKR-KKVGE--ED--LLNVFFIVVATN  100 (223)
T ss_dssp             TTCCEEEECCS-HHHHHHHHHHGGGCCCEEEECSSCCH---HHHHHHHTTSCEEEC-SCCCG--GG--SSSCSEEEECCC
T ss_pred             CCCEEEEECCC-HHHHHHHHHHHHCCCEEEEECCCCCH---HHHHHHHcCCcEEEE-CCCCH--hH--hCCCCEEEECCC
Confidence            57899999998 99999999999999998888755432   233333333222222 11100  00  157899999999


Q ss_pred             CchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccC-eeEE
Q psy2961          90 GNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKD-ITLR  132 (202)
Q Consensus        90 ~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~-~~~~  132 (202)
                      .+.....+...+..|..|.+...+. ...+..+..+.++ +.+.
T Consensus       101 d~~~N~~I~~~ak~gi~VNvvD~p~-~~~f~~Paiv~rg~l~ia  143 (223)
T 3dfz_A          101 DQAVNKFVKQHIKNDQLVNMASSFS-DGNIQIPAQFSRGRLSLA  143 (223)
T ss_dssp             CTHHHHHHHHHSCTTCEEEC------CCSEECCEEEEETTEEEE
T ss_pred             CHHHHHHHHHHHhCCCEEEEeCCcc-cCeEEEeeEEEeCCEEEE
Confidence            9888764443344888887764332 3344444444443 4443

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=97.68  E-value=0.00049  Score=55.61  Aligned_cols=79  Identities=18%  Similarity=0.276  Sum_probs=53.8

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCc-EEEEecCcc---cHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhh
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRD---DIDKLKSYLKSLGADYVF---T---EEELRN-ISRDA   76 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~~-vi~~~~~~~---~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~   76 (202)
                      ++++.+|||+|++|++|..+++.+...|++ ++.+.++..   ...+..+.+++.|....+   |   .+++.. +..  
T Consensus       256 ~~~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~--  333 (511)
T 2z5l_A          256 WQPSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAERDALAALVTA--  333 (511)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSCHHHHHHHHHH--
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHhc--
Confidence            578899999999999999999888889995 666666542   222234455556654322   2   233434 333  


Q ss_pred             CCCCCeEEEecCCC
Q psy2961          77 SIPKPKLALNCVGG   90 (202)
Q Consensus        77 ~~~~~d~vid~~g~   90 (202)
                        ..+|+||.+.|.
T Consensus       334 --~~ld~VVh~AGv  345 (511)
T 2z5l_A          334 --YPPNAVFHTAGI  345 (511)
T ss_dssp             --SCCSEEEECCCC
T ss_pred             --CCCcEEEECCcc
Confidence              579999999873

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=97.68  E-value=0.00025  Score=54.22  Aligned_cols=98  Identities=19%  Similarity=0.192  Sum_probs=61.9

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHH---HHHhcCCceEe-ChhHHHhHHHhhCCCCCeEEEe
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKS---YLKSLGADYVF-TEEELRNISRDASIPKPKLALN   86 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~---~~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~vid   86 (202)
                      ..+|||+|++|.+|..+++.+...|.+|++++++++...++.+   .+...+...+. |..+...+.+.....++|+||.
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi~   89 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIVVS   89 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEEEE
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEEEE
Confidence            3589999999999999999998899999999987622122333   33345665544 3333222333332237999999


Q ss_pred             cCCCchH---HHHHHhcccCc---EEEE
Q psy2961          87 CVGGNSA---TNLLRTLVSKG---VMVT  108 (202)
Q Consensus        87 ~~g~~~~---~~~~~~l~~~G---~~v~  108 (202)
                      +++....   ..+++.++..|   +++.
T Consensus        90 ~a~~~n~~~~~~l~~aa~~~g~v~~~v~  117 (346)
T 3i6i_A           90 TVGGESILDQIALVKAMKAVGTIKRFLP  117 (346)
T ss_dssp             CCCGGGGGGHHHHHHHHHHHCCCSEEEC
T ss_pred             CCchhhHHHHHHHHHHHHHcCCceEEee
Confidence            9986432   23555555444   5553

>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...

Probab=97.68  E-value=9e-05  Score=56.45  Aligned_cols=78  Identities=10%  Similarity=0.116  Sum_probs=49.7

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhc------CCce-Ee--C---hhHHHh-HHHhhC
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL------GADY-VF--T---EEELRN-ISRDAS   77 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~l------g~~~-v~--~---~~~~~~-~~~~~~   77 (202)
                      +.+|||+|+++++|.++++.+...|++|+.+.++.+..++..+.++.+      +... ++  |   ..++.. +.+. .
T Consensus         2 ~k~vlVTGas~GIG~ala~~L~~~G~~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~-~   80 (327)
T 1jtv_A            2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERV-T   80 (327)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTC-T
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHH-h
Confidence            578999999999999999999999999887766544321112222222      1221 11  3   233444 3333 2


Q ss_pred             CCCCeEEEecCC
Q psy2961          78 IPKPKLALNCVG   89 (202)
Q Consensus        78 ~~~~d~vid~~g   89 (202)
                      .+.+|++|+++|
T Consensus        81 ~g~iD~lVnnAG   92 (327)
T 1jtv_A           81 EGRVDVLVCNAG   92 (327)
T ss_dssp             TSCCSEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            357999999987

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=97.68  E-value=0.00036  Score=59.37  Aligned_cols=83  Identities=17%  Similarity=0.256  Sum_probs=57.0

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHH-HCCCc-EEEEecC---cccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHh
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIAR-HWGLK-TINIVRN---RDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRD   75 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~-~~g~~-vi~~~~~---~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~   75 (202)
                      +.++.++||.|+++++|.++++.+. ..|++ ++.+.++   .+...+..+.+++.|....+   |   .++... +.+.
T Consensus       527 ~~~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~G~~v~~~~~Dvsd~~~v~~~~~~~  606 (795)
T 3slk_A          527 WDAAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTAYGAEVSLQACDVADRETLAKVLASI  606 (795)
T ss_dssp             CCTTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTS
T ss_pred             cccccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccchHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHH
Confidence            5789999999999999999888776 79996 6666665   23333344556667765433   2   344545 5444


Q ss_pred             hCCCCCeEEEecCCC
Q psy2961          76 ASIPKPKLALNCVGG   90 (202)
Q Consensus        76 ~~~~~~d~vid~~g~   90 (202)
                      ....++|++|+++|-
T Consensus       607 ~~~~~id~lVnnAGv  621 (795)
T 3slk_A          607 PDEHPLTAVVHAAGV  621 (795)
T ss_dssp             CTTSCEEEEEECCCC
T ss_pred             HHhCCCEEEEECCCc
Confidence            333479999999874

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.68  E-value=0.00021  Score=47.23  Aligned_cols=76  Identities=13%  Similarity=0.169  Sum_probs=51.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCCCeEEEecC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNCV   88 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~vid~~   88 (202)
                      ++++|+|+|+ |.+|..+++.+...|.+|+++.++++    +.+.+++.+...+. +..+...+.+. .-.++|+++.++
T Consensus         5 ~~~~v~I~G~-G~iG~~~a~~l~~~g~~v~~~d~~~~----~~~~~~~~~~~~~~~d~~~~~~l~~~-~~~~~d~vi~~~   78 (144)
T 2hmt_A            5 KNKQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEE----KVNAYASYATHAVIANATEENELLSL-GIRNFEYVIVAI   78 (144)
T ss_dssp             -CCSEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHH----HHHTTTTTCSEEEECCTTCHHHHHTT-TGGGCSEEEECC
T ss_pred             cCCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHhCCEEEEeCCCCHHHHHhc-CCCCCCEEEECC
Confidence            3568999998 59999999999999999887776543    44555555554433 33332223332 124689999999


Q ss_pred             CCc
Q psy2961          89 GGN   91 (202)
Q Consensus        89 g~~   91 (202)
                      +.+
T Consensus        79 ~~~   81 (144)
T 2hmt_A           79 GAN   81 (144)
T ss_dssp             CSC
T ss_pred             CCc
Confidence            975

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=97.65  E-value=0.00034  Score=57.68  Aligned_cols=78  Identities=17%  Similarity=0.117  Sum_probs=51.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCc---------ccHHHHHHHHHhcCCceEeCh---hH---HHh-HH
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR---------DDIDKLKSYLKSLGADYVFTE---EE---LRN-IS   73 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~---------~~~~~~~~~~~~lg~~~v~~~---~~---~~~-~~   73 (202)
                      .|++++|+|+++++|.++++.+...|++|+...++.         +..++..+.+++.|...+.|.   .+   +.+ +.
T Consensus         7 ~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~~~~d~~d~~~~~~~v~~~~   86 (604)
T 2et6_A            7 KDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVAVADYNNVLDGDKIVETAV   86 (604)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC-----------CHHHHHHHHHHHTTCEEEEECCCTTCHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCccccccccchHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHH
Confidence            478999999999999999999999999988875433         322222344445565444432   22   222 33


Q ss_pred             HhhCCCCCeEEEecCC
Q psy2961          74 RDASIPKPKLALNCVG   89 (202)
Q Consensus        74 ~~~~~~~~d~vid~~g   89 (202)
                      +.+  +.+|++|+++|
T Consensus        87 ~~~--G~iDiLVnNAG  100 (604)
T 2et6_A           87 KNF--GTVHVIINNAG  100 (604)
T ss_dssp             HHH--SCCCEEEECCC
T ss_pred             HHc--CCCCEEEECCC
Confidence            333  57999999998

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=97.65  E-value=0.00016  Score=52.44  Aligned_cols=72  Identities=13%  Similarity=0.171  Sum_probs=49.5

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-Ch--hHHHh-HH---HhhCCCCCeE
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TE--EELRN-IS---RDASIPKPKL   83 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~--~~~~~-~~---~~~~~~~~d~   83 (202)
                      +.++||+|+++++|.++++.+...|++|+.+.++++.      ..++++...+. |-  ++... +.   +..  +++|+
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~--g~id~   73 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEE------AAQSLGAVPLPTDLEKDDPKGLVKRALEAL--GGLHV   73 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHH------HHHHHTCEEEECCTTTSCHHHHHHHHHHHH--TSCCE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH------HHHhhCcEEEecCCchHHHHHHHHHHHHHc--CCCCE
Confidence            5789999999999999999999999999998887652      22334533222 21  22222 22   222  47999


Q ss_pred             EEecCCC
Q psy2961          84 ALNCVGG   90 (202)
Q Consensus        84 vid~~g~   90 (202)
                      +|+++|.
T Consensus        74 lv~~Ag~   80 (239)
T 2ekp_A           74 LVHAAAV   80 (239)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999873

>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*

Probab=97.65  E-value=0.00017  Score=56.13  Aligned_cols=82  Identities=13%  Similarity=0.126  Sum_probs=52.3

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHH-CCCcEEEEecCcccHH-----------H-HHHHHHhcCCceEe---C---hhHH
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARH-WGLKTINIVRNRDDID-----------K-LKSYLKSLGADYVF---T---EEEL   69 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~-~g~~vi~~~~~~~~~~-----------~-~~~~~~~lg~~~v~---~---~~~~   69 (202)
                      ..|+++||+|+++++|.++++.+.. .|++|+.+.++.+...           + ..+.+++.|.....   |   .++.
T Consensus        45 ~~gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~G~~a~~i~~Dvtd~~~v  124 (405)
T 3zu3_A           45 NGPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQKGLYAKSINGDAFSDEIK  124 (405)
T ss_dssp             TCCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHHH
T ss_pred             CCCCEEEEeCcchHHHHHHHHHHHHhcCCEEEEEeCCchhhhhhcccccchhHHHHHHHHHhcCCceEEEECCCCCHHHH
Confidence            4578899999999999998887777 9999988776544211           0 12244556654322   2   3333


Q ss_pred             Hh-HHHhhC-CCCCeEEEecCCC
Q psy2961          70 RN-ISRDAS-IPKPKLALNCVGG   90 (202)
Q Consensus        70 ~~-~~~~~~-~~~~d~vid~~g~   90 (202)
                      .. +.+... -+++|++++++|.
T Consensus       125 ~~~v~~i~~~~G~IDiLVNNAG~  147 (405)
T 3zu3_A          125 QLTIDAIKQDLGQVDQVIYSLAS  147 (405)
T ss_dssp             HHHHHHHHHHTSCEEEEEECCCC
T ss_pred             HHHHHHHHHHcCCCCEEEEcCcc
Confidence            33 322211 1579999999875

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=97.65  E-value=0.00042  Score=52.06  Aligned_cols=95  Identities=14%  Similarity=0.210  Sum_probs=59.7

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccH-HHHHHHH---HhcCCceEe-ChhHHHhHHHhhCCCCCeEEE
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDI-DKLKSYL---KSLGADYVF-TEEELRNISRDASIPKPKLAL   85 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~-~~~~~~~---~~lg~~~v~-~~~~~~~~~~~~~~~~~d~vi   85 (202)
                      ..+|+|+|++|.+|..+++.+...|.+|++++++.+.. .++.+.+   ...+...+. |..+...+.+..  .++|+||
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~--~~~d~vi   81 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDAL--KQVDVVI   81 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHH--TTCSEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHH--hCCCEEE
Confidence            35799999999999999999888999999998874311 1123333   233544333 333333344444  4699999


Q ss_pred             ecCCCc-------hHHHHHHhcccC---cEEE
Q psy2961          86 NCVGGN-------SATNLLRTLVSK---GVMV  107 (202)
Q Consensus        86 d~~g~~-------~~~~~~~~l~~~---G~~v  107 (202)
                      .+++..       ....+++.++..   .++|
T Consensus        82 ~~a~~~~~~~~~~~~~~l~~aa~~~g~v~~~v  113 (313)
T 1qyd_A           82 SALAGGVLSHHILEQLKLVEAIKEAGNIKRFL  113 (313)
T ss_dssp             ECCCCSSSSTTTTTHHHHHHHHHHSCCCSEEE
T ss_pred             ECCccccchhhHHHHHHHHHHHHhcCCCceEE
Confidence            998754       122355555443   4776

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=97.64  E-value=0.00042  Score=50.58  Aligned_cols=79  Identities=15%  Similarity=0.136  Sum_probs=50.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCc-EEEEecCcccHHHHHHHHHhc--CCce-Ee--C---h-hHHHh-HHHhhC-
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSL--GADY-VF--T---E-EELRN-ISRDAS-   77 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~-vi~~~~~~~~~~~~~~~~~~l--g~~~-v~--~---~-~~~~~-~~~~~~-   77 (202)
                      .|.+|+|+|++|++|..+++.+...|++ |+.+.++.+.  +..+.+.+.  +... ++  |   . ++... +.+... 
T Consensus         4 ~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~--~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   81 (254)
T 1sby_A            4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENP--TALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQ   81 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCH--HHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchH--HHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHh
Confidence            4689999999999999999999999997 7777766531  233444333  2221 11  2   2 33333 322211 


Q ss_pred             CCCCeEEEecCCC
Q psy2961          78 IPKPKLALNCVGG   90 (202)
Q Consensus        78 ~~~~d~vid~~g~   90 (202)
                      .+++|++|+++|.
T Consensus        82 ~g~id~lv~~Ag~   94 (254)
T 1sby_A           82 LKTVDILINGAGI   94 (254)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCcc
Confidence            1479999999983

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=97.64  E-value=0.00014  Score=49.91  Aligned_cols=102  Identities=14%  Similarity=0.143  Sum_probs=63.1

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHC-CCcEEEEecCcccHHHHHHHHHhcCCc-eEeChhHHHh-HHHhhCCCCC
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGAD-YVFTEEELRN-ISRDASIPKP   81 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~-g~~vi~~~~~~~~~~~~~~~~~~lg~~-~v~~~~~~~~-~~~~~~~~~~   81 (202)
                      ...+.++++||-.|+|+  |..+..+++.. +.+++++.-+++..+...+.++..+.. .+.-..+..+ +...  ...+
T Consensus        20 ~~~~~~~~~vldiG~G~--G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~   95 (178)
T 3hm2_A           20 ALAPKPHETLWDIGGGS--GSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDV--PDNP   95 (178)
T ss_dssp             HHCCCTTEEEEEESTTT--THHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGC--CSCC
T ss_pred             HhcccCCCeEEEeCCCC--CHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhcc--CCCC
Confidence            34578899999999973  88999999987 567777666655322223333445554 2221122111 2211  1579


Q ss_pred             eEEEecCCCch---HHHHHHhcccCcEEEEEe
Q psy2961          82 KLALNCVGGNS---ATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        82 d~vid~~g~~~---~~~~~~~l~~~G~~v~~g  110 (202)
                      |+|+.......   +..+.+.|+++|+++...
T Consensus        96 D~i~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  127 (178)
T 3hm2_A           96 DVIFIGGGLTAPGVFAAAWKRLPVGGRLVANA  127 (178)
T ss_dssp             SEEEECC-TTCTTHHHHHHHTCCTTCEEEEEE
T ss_pred             CEEEECCcccHHHHHHHHHHhcCCCCEEEEEe
Confidence            99997654433   345788999999998765

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=97.64  E-value=0.00035  Score=50.60  Aligned_cols=74  Identities=16%  Similarity=0.094  Sum_probs=49.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC--CCcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCCCeEEEe
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALN   86 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~--g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~vid   86 (202)
                      .+.+|||+|++|.+|..+++.+...  |++|+.+.++++    +.+.+ ..+...+. |-.+...+.+..  .++|+||.
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~----~~~~~-~~~~~~~~~D~~d~~~~~~~~--~~~d~vi~   75 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQ----GKEKI-GGEADVFIGDITDADSINPAF--QGIDALVI   75 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHH----HHHHT-TCCTTEEECCTTSHHHHHHHH--TTCSEEEE
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCC----chhhc-CCCeeEEEecCCCHHHHHHHH--cCCCEEEE
Confidence            4678999999999999999988888  889999887754    22222 11233322 323322244433  36899999


Q ss_pred             cCCC
Q psy2961          87 CVGG   90 (202)
Q Consensus        87 ~~g~   90 (202)
                      ++|.
T Consensus        76 ~a~~   79 (253)
T 1xq6_A           76 LTSA   79 (253)
T ss_dssp             CCCC
T ss_pred             eccc
Confidence            8873

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=97.63  E-value=0.00021  Score=53.65  Aligned_cols=93  Identities=10%  Similarity=0.029  Sum_probs=59.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcccHHHHHHHHHhcCCc--eEeChhHHHhHHHhhCCCCCeEEEe
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGAD--YVFTEEELRNISRDASIPKPKLALN   86 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~--~v~~~~~~~~~~~~~~~~~~d~vid   86 (202)
                      .+.+|+|+|+| ++|.+++..+...|+ +++++.++.++   ..+.+++++..  .+++..++.+   ..  .++|+||+
T Consensus       140 ~~~~vlVlGaG-g~g~aia~~L~~~G~~~V~v~nR~~~k---a~~la~~~~~~~~~~~~~~~~~~---~~--~~aDivIn  210 (297)
T 2egg_A          140 DGKRILVIGAG-GGARGIYFSLLSTAAERIDMANRTVEK---AERLVREGDERRSAYFSLAEAET---RL--AEYDIIIN  210 (297)
T ss_dssp             TTCEEEEECCS-HHHHHHHHHHHTTTCSEEEEECSSHHH---HHHHHHHSCSSSCCEECHHHHHH---TG--GGCSEEEE
T ss_pred             CCCEEEEECcH-HHHHHHHHHHHHCCCCEEEEEeCCHHH---HHHHHHHhhhccCceeeHHHHHh---hh--ccCCEEEE
Confidence            57899999997 899999999999998 55555555432   23344555542  3443333322   22  46899999


Q ss_pred             cCCCchHHH------HHHhcccCcEEEEEec
Q psy2961          87 CVGGNSATN------LLRTLVSKGVMVTYGG  111 (202)
Q Consensus        87 ~~g~~~~~~------~~~~l~~~G~~v~~g~  111 (202)
                      |++......      ....++++..++.+..
T Consensus       211 ~t~~~~~~~~~~~~i~~~~l~~~~~v~D~~y  241 (297)
T 2egg_A          211 TTSVGMHPRVEVQPLSLERLRPGVIVSDIIY  241 (297)
T ss_dssp             CSCTTCSSCCSCCSSCCTTCCTTCEEEECCC
T ss_pred             CCCCCCCCCCCCCCCCHHHcCCCCEEEEcCC
Confidence            998654210      1245677777777763

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=97.63  E-value=3.8e-05  Score=56.85  Aligned_cols=75  Identities=19%  Similarity=0.313  Sum_probs=49.6

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceE-eC---hhHHHh-HHHhhC-CCCC
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FT---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v-~~---~~~~~~-~~~~~~-~~~~   81 (202)
                      ...|++|||+|+++++|.++++.+...|++|+.+.++.+.    .   .. ....+ .|   .++... +.+... .+++
T Consensus        11 ~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~----~---~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   82 (269)
T 3vtz_A           11 EFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKS----D---VN-VSDHFKIDVTNEEEVKEAVEKTTKKYGRI   82 (269)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC------C---TT-SSEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchh----c---cC-ceeEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            4578999999999999999999999999999988877642    1   11 11211 12   333333 222211 1479


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|+++|.
T Consensus        83 D~lv~nAg~   91 (269)
T 3vtz_A           83 DILVNNAGI   91 (269)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCc
Confidence            999999974

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=97.63  E-value=0.0006  Score=50.59  Aligned_cols=79  Identities=8%  Similarity=0.067  Sum_probs=51.9

Q ss_pred             CCCEEEEeCCC--cHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHH-hcCCceEe--C---hhHHHh-HHHhhC-CC
Q psy2961          10 PGDVVIQNGAN--SACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK-SLGADYVF--T---EEELRN-ISRDAS-IP   79 (202)
Q Consensus        10 ~g~~VlI~g~~--~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~-~lg~~~v~--~---~~~~~~-~~~~~~-~~   79 (202)
                      .|.+|||+|++  +++|.++++.+...|++|+.+.++..  .+..+.+. +.+...++  |   .++... +.+... .+
T Consensus        25 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  102 (280)
T 3nrc_A           25 AGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQF--KDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVELGKVWD  102 (280)
T ss_dssp             TTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTTC--HHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCchH--HHHHHHHHHhcCCceEEEeecCCHHHHHHHHHHHHHHcC
Confidence            47899999988  66999999999999999998887762  22444443 33332222  2   333333 332211 25


Q ss_pred             CCeEEEecCCC
Q psy2961          80 KPKLALNCVGG   90 (202)
Q Consensus        80 ~~d~vid~~g~   90 (202)
                      ++|++|.++|.
T Consensus       103 ~id~li~nAg~  113 (280)
T 3nrc_A          103 GLDAIVHSIAF  113 (280)
T ss_dssp             SCCEEEECCCC
T ss_pred             CCCEEEECCcc
Confidence            79999999874

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=97.61  E-value=0.00049  Score=51.40  Aligned_cols=76  Identities=17%  Similarity=0.134  Sum_probs=52.7

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCC-CcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCCCeEEEecC
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWG-LKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNCV   88 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g-~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~vid~~   88 (202)
                      ..+|||+|++|.+|..+++.+...| .+|++++++++..  ....+...+...+. |..+...+.+..  .++|+||.++
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~--~~~~l~~~~~~~~~~D~~d~~~l~~~~--~~~d~vi~~a   80 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKK--AAKELRLQGAEVVQGDQDDQVIMELAL--NGAYATFIVT   80 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSH--HHHHHHHTTCEEEECCTTCHHHHHHHH--TTCSEEEECC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCH--HHHHHHHCCCEEEEecCCCHHHHHHHH--hcCCEEEEeC
Confidence            4789999999999999998888778 8999999887642  12334445655443 333333344444  4689999998


Q ss_pred             CC
Q psy2961          89 GG   90 (202)
Q Consensus        89 g~   90 (202)
                      +.
T Consensus        81 ~~   82 (299)
T 2wm3_A           81 NY   82 (299)
T ss_dssp             CH
T ss_pred             CC
Confidence            74

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=97.60  E-value=0.00031  Score=51.23  Aligned_cols=73  Identities=14%  Similarity=0.078  Sum_probs=50.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-C---hhHHHh-HHHhhC-CCCCeE
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-T---EEELRN-ISRDAS-IPKPKL   83 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~---~~~~~~-~~~~~~-~~~~d~   83 (202)
                      .+.++||+|+++++|.++++.+...|++|+.+.++.+.        ++.+...+. |   +++... +.+... .+++|+
T Consensus         6 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~--------~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~id~   77 (250)
T 2fwm_X            6 SGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQ--------EQYPFATEVMDVADAAQVAQVCQRLLAETERLDA   77 (250)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCCS--------SCCSSEEEECCTTCHHHHHHHHHHHHHHCSCCCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchhh--------hcCCceEEEcCCCCHHHHHHHHHHHHHHcCCCCE
Confidence            46899999999999999999999999999998877641        223332222 3   333333 332211 247999


Q ss_pred             EEecCCC
Q psy2961          84 ALNCVGG   90 (202)
Q Consensus        84 vid~~g~   90 (202)
                      +|+++|.
T Consensus        78 lv~~Ag~   84 (250)
T 2fwm_X           78 LVNAAGI   84 (250)
T ss_dssp             EEECCCC
T ss_pred             EEECCCc
Confidence            9999874

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=97.58  E-value=0.00023  Score=52.08  Aligned_cols=76  Identities=13%  Similarity=0.297  Sum_probs=47.0

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHC--CCcEEEEecCcccHHHHHHHH-HhcCCceEe---C---hhHHHh-HHHhhC-CC
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYL-KSLGADYVF---T---EEELRN-ISRDAS-IP   79 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~--g~~vi~~~~~~~~~~~~~~~~-~~lg~~~v~---~---~~~~~~-~~~~~~-~~   79 (202)
                      |+++||+|+++++|.++++.+...  |+.|+.+.++++.    .+.+ ++++.....   |   .++... +.+... .+
T Consensus         2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~----~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   77 (254)
T 3kzv_A            2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAP----LKKLKEKYGDRFFYVVGDITEDSVLKQLVNAAVKGHG   77 (254)
T ss_dssp             CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHH----HHHHHHHHGGGEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHH----HHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            678999999999999988766665  4677777766553    3333 344433221   2   333333 222211 14


Q ss_pred             CCeEEEecCCC
Q psy2961          80 KPKLALNCVGG   90 (202)
Q Consensus        80 ~~d~vid~~g~   90 (202)
                      ++|++|+++|.
T Consensus        78 ~id~lvnnAg~   88 (254)
T 3kzv_A           78 KIDSLVANAGV   88 (254)
T ss_dssp             CCCEEEEECCC
T ss_pred             CccEEEECCcc
Confidence            79999999874

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=97.58  E-value=0.00014  Score=52.63  Aligned_cols=100  Identities=17%  Similarity=0.185  Sum_probs=64.7

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHh-HHHhhCCCCCeE
Q psy2961           6 NSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRN-ISRDASIPKPKL   83 (202)
Q Consensus         6 ~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~-~~~~~~~~~~d~   83 (202)
                      ..++++++||..|+|  .|..++.+++..+.+++++..+++..+...+.++..|...+. ...|... +..   ..++|+
T Consensus        87 l~~~~~~~vLdiG~G--~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD~  161 (235)
T 1jg1_A           87 ANLKPGMNILEVGTG--SGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPP---KAPYDV  161 (235)
T ss_dssp             HTCCTTCCEEEECCT--TSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG---GCCEEE
T ss_pred             cCCCCCCEEEEEeCC--cCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCC---CCCccE
Confidence            467889999999987  588888999887777888776665322223333445543221 1122211 211   245899


Q ss_pred             EEecCCCchHH-HHHHhcccCcEEEEEe
Q psy2961          84 ALNCVGGNSAT-NLLRTLVSKGVMVTYG  110 (202)
Q Consensus        84 vid~~g~~~~~-~~~~~l~~~G~~v~~g  110 (202)
                      |+.+..-.... .+.+.|+++|+++...
T Consensus       162 Ii~~~~~~~~~~~~~~~L~pgG~lvi~~  189 (235)
T 1jg1_A          162 IIVTAGAPKIPEPLIEQLKIGGKLIIPV  189 (235)
T ss_dssp             EEECSBBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             EEECCcHHHHHHHHHHhcCCCcEEEEEE
Confidence            99876655443 5789999999998765

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=97.57  E-value=0.00041  Score=55.22  Aligned_cols=80  Identities=16%  Similarity=0.249  Sum_probs=52.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-C---hhHHHh-HHHhhC--CCCCe
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-T---EEELRN-ISRDAS--IPKPK   82 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~---~~~~~~-~~~~~~--~~~~d   82 (202)
                      +|.++||+|+++++|..+++.+...|++|+.+.++... ++..+..++++...+. |   .++... +.+...  +..+|
T Consensus       212 ~gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~~~-~~l~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~~~g~~id  290 (454)
T 3u0b_A          212 DGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGAA-EDLKRVADKVGGTALTLDVTADDAVDKITAHVTEHHGGKVD  290 (454)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGGGH-HHHHHHHHHHTCEEEECCTTSTTHHHHHHHHHHHHSTTCCS
T ss_pred             CCCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCccH-HHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHHcCCCce
Confidence            67899999999999999998888889998877665431 2223344556655333 2   333333 332211  23499


Q ss_pred             EEEecCCC
Q psy2961          83 LALNCVGG   90 (202)
Q Consensus        83 ~vid~~g~   90 (202)
                      ++|.++|.
T Consensus       291 ~lV~nAGv  298 (454)
T 3u0b_A          291 ILVNNAGI  298 (454)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCcc
Confidence            99999984

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=97.56  E-value=0.00036  Score=52.27  Aligned_cols=95  Identities=12%  Similarity=0.194  Sum_probs=59.6

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCc-cc-HH-HHHHH---HHhcCCceEe-ChhHHHhHHHhhCCCCCeE
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR-DD-ID-KLKSY---LKSLGADYVF-TEEELRNISRDASIPKPKL   83 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~-~~-~~-~~~~~---~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~   83 (202)
                      +.+|+|+||+|.+|..+++.+...|.+|+++++++ .. .. ++.+.   +...+...+. |..+...+.+..  .++|+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~--~~~d~   79 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAI--KQVDI   79 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHH--TTCSE
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHH--hCCCE
Confidence            46799999999999999988888899999998876 10 00 12222   2344555443 333333344444  46999


Q ss_pred             EEecCCCch---HHHHHHhcccC---cEEE
Q psy2961          84 ALNCVGGNS---ATNLLRTLVSK---GVMV  107 (202)
Q Consensus        84 vid~~g~~~---~~~~~~~l~~~---G~~v  107 (202)
                      ||.+++...   ...+++.++..   .+++
T Consensus        80 vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v  109 (307)
T 2gas_A           80 VICAAGRLLIEDQVKIIKAIKEAGNVKKFF  109 (307)
T ss_dssp             EEECSSSSCGGGHHHHHHHHHHHCCCSEEE
T ss_pred             EEECCcccccccHHHHHHHHHhcCCceEEe
Confidence            999998643   22355544432   4666

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=97.56  E-value=0.00017  Score=53.01  Aligned_cols=74  Identities=15%  Similarity=0.197  Sum_probs=49.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-C---hhHHHh-HHHhhC-CCCCeE
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-T---EEELRN-ISRDAS-IPKPKL   83 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~---~~~~~~-~~~~~~-~~~~d~   83 (202)
                      .+++|||+|+++++|.++++.+...|++|+.+.++.+..    .   +.....+. |   +++... +.+... -+++|+
T Consensus        27 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~----~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~   99 (260)
T 3un1_A           27 QQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPS----A---DPDIHTVAGDISKPETADRIVREGIERFGRIDS   99 (260)
T ss_dssp             TCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCCC----S---STTEEEEESCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhhc----c---cCceEEEEccCCCHHHHHHHHHHHHHHCCCCCE
Confidence            478999999999999999999999999999998876521    1   11122211 2   333333 322211 147999


Q ss_pred             EEecCCC
Q psy2961          84 ALNCVGG   90 (202)
Q Consensus        84 vid~~g~   90 (202)
                      +|.++|.
T Consensus       100 lv~nAg~  106 (260)
T 3un1_A          100 LVNNAGV  106 (260)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999873

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=97.55  E-value=0.00021  Score=49.49  Aligned_cols=100  Identities=15%  Similarity=0.135  Sum_probs=62.0

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCCCeEEE
Q psy2961           7 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLAL   85 (202)
Q Consensus         7 ~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~vi   85 (202)
                      .+++|++||=.|+|  .|..+..+++. +.+|+++..+++......+.+++.+.+.+- -..+...+.... ...+|+|+
T Consensus        19 ~~~~~~~vLDiGcG--~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~-~~~fD~v~   94 (185)
T 3mti_A           19 VLDDESIVVDATMG--NGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYV-REPIRAAI   94 (185)
T ss_dssp             TCCTTCEEEESCCT--TSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTC-CSCEEEEE
T ss_pred             hCCCCCEEEEEcCC--CCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhc-cCCcCEEE
Confidence            46789999999987  48888888888 888999887776433333444444543221 011111122222 35799987


Q ss_pred             ecCCCc----------------hHHHHHHhcccCcEEEEEe
Q psy2961          86 NCVGGN----------------SATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        86 d~~g~~----------------~~~~~~~~l~~~G~~v~~g  110 (202)
                      -..+.-                .+..+.+.|+|||+++.+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  135 (185)
T 3mti_A           95 FNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMI  135 (185)
T ss_dssp             EEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEE
Confidence            653211                1133668999999998875

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=97.54  E-value=0.00028  Score=49.75  Aligned_cols=102  Identities=22%  Similarity=0.214  Sum_probs=63.3

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHC-CCcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHh-HHHhhCCCC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRN-ISRDASIPK   80 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~-g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~-~~~~~~~~~   80 (202)
                      ...+++++++||-.|+|+  |..++.+++.. ..+++++..+++......+.++..+.+.+- ...+..+ +..   ...
T Consensus        34 ~~l~~~~~~~vLDiG~G~--G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---~~~  108 (204)
T 3e05_A           34 SKLRLQDDLVMWDIGAGS--ASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDD---LPD  108 (204)
T ss_dssp             HHTTCCTTCEEEEETCTT--CHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTT---SCC
T ss_pred             HHcCCCCCCEEEEECCCC--CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhc---CCC
Confidence            345678999999999984  88889999886 367777776665332223333444543221 1122211 111   146


Q ss_pred             CeEEEecCCCch----HHHHHHhcccCcEEEEEe
Q psy2961          81 PKLALNCVGGNS----ATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        81 ~d~vid~~g~~~----~~~~~~~l~~~G~~v~~g  110 (202)
                      +|+|+.......    +..+.+.|+++|+++...
T Consensus       109 ~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  142 (204)
T 3e05_A          109 PDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNA  142 (204)
T ss_dssp             CSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             CCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEEe
Confidence            999987665322    234678999999999865

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=97.53  E-value=0.00015  Score=52.56  Aligned_cols=96  Identities=11%  Similarity=-0.010  Sum_probs=59.4

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHh----cCCceEeChhHHHhHHHhhCCCCCeEE
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS----LGADYVFTEEELRNISRDASIPKPKLA   84 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~----lg~~~v~~~~~~~~~~~~~~~~~~d~v   84 (202)
                      .+|.+||-.|.|  .|..+..+++..+.+++++--+++.    .+.+++    .+....+...+...+........||.|
T Consensus        59 ~~G~rVLdiG~G--~G~~~~~~~~~~~~~v~~id~~~~~----~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i  132 (236)
T 3orh_A           59 SKGGRVLEVGFG--MAIAASKVQEAPIDEHWIIECNDGV----FQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGI  132 (236)
T ss_dssp             TTCEEEEEECCT--TSHHHHHHTTSCEEEEEEEECCHHH----HHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEE
T ss_pred             cCCCeEEEECCC--ccHHHHHHHHhCCcEEEEEeCCHHH----HHHHHHHHhhCCCceEEEeehHHhhcccccccCCceE
Confidence            689999999997  4777888888777787777666653    444443    333222212233332222333578887


Q ss_pred             -EecCCCc-----------hHHHHHHhcccCcEEEEEe
Q psy2961          85 -LNCVGGN-----------SATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        85 -id~~g~~-----------~~~~~~~~l~~~G~~v~~g  110 (202)
                       +|+....           .+.++.++|+|||+++.+.
T Consensus       133 ~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~  170 (236)
T 3orh_A          133 LYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             EECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             EEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence             5665432           1223678999999998753

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=97.53  E-value=4.9e-05  Score=55.20  Aligned_cols=38  Identities=18%  Similarity=0.160  Sum_probs=33.7

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      ..+.++||+|+++++|.++++.+...|++|+.+.++++
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~   42 (241)
T 1dhr_A            5 GEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN   42 (241)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChh
Confidence            46789999999999999999999999999999888765

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=97.53  E-value=0.00036  Score=50.71  Aligned_cols=76  Identities=8%  Similarity=0.048  Sum_probs=45.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe--ChhHH--Hh-HHHhhC-CCCCeE
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--TEEEL--RN-ISRDAS-IPKPKL   83 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~--~~~~~--~~-~~~~~~-~~~~d~   83 (202)
                      .|+++||+|+++++|.++++.+.. |++|+.+.++++    +.+.+.+......+  |-.+.  .. +.+... -+++|+
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~~~----~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~id~   78 (245)
T 3e9n_A            4 KKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNPE----HLAALAEIEGVEPIESDIVKEVLEEGGVDKLKNLDHVDT   78 (245)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESCHH----HHHHHHTSTTEEEEECCHHHHHHTSSSCGGGTTCSCCSE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCCHH----HHHHHHhhcCCcceecccchHHHHHHHHHHHHhcCCCCE
Confidence            368999999999999998877765 888888887765    34444443222222  21111  12 222222 247999


Q ss_pred             EEecCCC
Q psy2961          84 ALNCVGG   90 (202)
Q Consensus        84 vid~~g~   90 (202)
                      +|.++|.
T Consensus        79 lv~~Ag~   85 (245)
T 3e9n_A           79 LVHAAAV   85 (245)
T ss_dssp             EEECC--
T ss_pred             EEECCCc
Confidence            9999974

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=97.53  E-value=0.00027  Score=51.75  Aligned_cols=72  Identities=14%  Similarity=0.057  Sum_probs=49.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-C---hhHHHh-HHHhhC-CCCCeE
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-T---EEELRN-ISRDAS-IPKPKL   83 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~---~~~~~~-~~~~~~-~~~~d~   83 (202)
                      .+.++||+|+++++|.++++.+...|++|+.+.++.+.    .+.     ...+. |   +++... +.+... .+++|+
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~----~~~-----~~~~~~Dl~d~~~v~~~~~~~~~~~g~iD~   90 (253)
T 2nm0_A           20 MSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEP----PEG-----FLAVKCDITDTEQVEQAYKEIEETHGPVEV   90 (253)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCC----CTT-----SEEEECCTTSHHHHHHHHHHHHHHTCSCSE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHh----hcc-----ceEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            36899999999999999999999999999998887653    111     12111 2   333333 332211 246899


Q ss_pred             EEecCCC
Q psy2961          84 ALNCVGG   90 (202)
Q Consensus        84 vid~~g~   90 (202)
                      +|.++|.
T Consensus        91 lv~nAg~   97 (253)
T 2nm0_A           91 LIANAGV   97 (253)
T ss_dssp             EEEECSC
T ss_pred             EEECCCC
Confidence            9998873

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=97.52  E-value=0.00067  Score=51.89  Aligned_cols=79  Identities=9%  Similarity=0.100  Sum_probs=50.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHH-hc------CCceEe-ChhHHHhHHHhhCCCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK-SL------GADYVF-TEEELRNISRDASIPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~-~l------g~~~v~-~~~~~~~~~~~~~~~~~   81 (202)
                      .+.+|||+|++|.+|..+++.+...|.+|+++.++.....+..+.+. .+      +...+. |-.+...+.+..  .++
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~--~~~  103 (352)
T 1sb8_A           26 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNAC--AGV  103 (352)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHH--TTC
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHh--cCC
Confidence            35789999999999999999888889999999886542112223222 11      222222 322222233433  379


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |+||.+++.
T Consensus       104 d~vih~A~~  112 (352)
T 1sb8_A          104 DYVLHQAAL  112 (352)
T ss_dssp             SEEEECCSC
T ss_pred             CEEEECCcc
Confidence            999999984

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=97.52  E-value=0.00041  Score=49.69  Aligned_cols=104  Identities=15%  Similarity=0.125  Sum_probs=64.0

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCC------CcEEEEecCcccHHHHHHHHHhcC-----CceE-eChhHHHh-HH
Q psy2961           7 SLSPGDVVIQNGANSACGQNVIQIARHWG------LKTINIVRNRDDIDKLKSYLKSLG-----ADYV-FTEEELRN-IS   73 (202)
Q Consensus         7 ~~~~g~~VlI~g~~~~vG~~~i~la~~~g------~~vi~~~~~~~~~~~~~~~~~~lg-----~~~v-~~~~~~~~-~~   73 (202)
                      .++++++||-.|+|+  |..+..+++..+      .+++++..+++......+.++..+     .+.+ +...|... ..
T Consensus        77 ~~~~~~~VLdiG~G~--G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  154 (227)
T 2pbf_A           77 VLKPGSRAIDVGSGS--GYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNE  154 (227)
T ss_dssp             TSCTTCEEEEESCTT--SHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCH
T ss_pred             hCCCCCEEEEECCCC--CHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhccc
Confidence            578999999999974  888889998876      578887766653222233333444     1211 11112111 10


Q ss_pred             -HhhCCCCCeEEEecCCCchH-HHHHHhcccCcEEEEEecc
Q psy2961          74 -RDASIPKPKLALNCVGGNSA-TNLLRTLVSKGVMVTYGGM  112 (202)
Q Consensus        74 -~~~~~~~~d~vid~~g~~~~-~~~~~~l~~~G~~v~~g~~  112 (202)
                       .......+|+|+........ ..+.+.|+++|+++.....
T Consensus       155 ~~~~~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~lv~~~~~  195 (227)
T 2pbf_A          155 EEKKELGLFDAIHVGASASELPEILVDLLAENGKLIIPIEE  195 (227)
T ss_dssp             HHHHHHCCEEEEEECSBBSSCCHHHHHHEEEEEEEEEEEEE
T ss_pred             ccCccCCCcCEEEECCchHHHHHHHHHhcCCCcEEEEEEcc
Confidence             00112579999877665544 4478999999999887533

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=97.51  E-value=0.00051  Score=51.51  Aligned_cols=102  Identities=10%  Similarity=0.075  Sum_probs=66.4

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCc-eE-eChhHHHhHHHhhCCCCC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD-YV-FTEEELRNISRDASIPKP   81 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~-~v-~~~~~~~~~~~~~~~~~~   81 (202)
                      +...++++++||-.|+|  .|..+..+++..|++++++.-+++......+.++..|.. .+ +...|   +.+.  ...+
T Consensus        66 ~~~~~~~~~~vLDiGcG--~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d---~~~~--~~~f  138 (302)
T 3hem_A           66 DKLNLEPGMTLLDIGCG--WGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQG---WEEF--DEPV  138 (302)
T ss_dssp             HTTCCCTTCEEEEETCT--TSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECC---GGGC--CCCC
T ss_pred             HHcCCCCcCEEEEeecc--CcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECC---HHHc--CCCc
Confidence            34567899999999997  488999999998899888887776433333444445543 11 11112   1122  3679


Q ss_pred             eEEEecCCCc----------------hHHHHHHhcccCcEEEEEecc
Q psy2961          82 KLALNCVGGN----------------SATNLLRTLVSKGVMVTYGGM  112 (202)
Q Consensus        82 d~vid~~g~~----------------~~~~~~~~l~~~G~~v~~g~~  112 (202)
                      |+|+....-.                .+..+.++|+|||+++.....
T Consensus       139 D~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  185 (302)
T 3hem_A          139 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT  185 (302)
T ss_dssp             SEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEE
T ss_pred             cEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence            9998643211                123367899999999987643

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=97.51  E-value=0.0011  Score=50.83  Aligned_cols=99  Identities=11%  Similarity=0.079  Sum_probs=62.1

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhc-CCceEe-C-hhHHHhHHHhhCCCCCeEEEec
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL-GADYVF-T-EEELRNISRDASIPKPKLALNC   87 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~l-g~~~v~-~-~~~~~~~~~~~~~~~~d~vid~   87 (202)
                      +.+|+|+|++|.+|..+++.+...|.+|++++++.+..  ..+.+... +...+. | -.+...+.+..  .++|+||.+
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~--~~~~l~~~~~v~~v~~D~l~d~~~l~~~~--~~~d~Vi~~   80 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGL--IAEELQAIPNVTLFQGPLLNNVPLMDTLF--EGAHLAFIN   80 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSH--HHHHHHTSTTEEEEESCCTTCHHHHHHHH--TTCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChh--hHHHHhhcCCcEEEECCccCCHHHHHHHH--hcCCEEEEc
Confidence            56899999999999999988888999999999887642  11333332 333222 3 33333344444  468999977


Q ss_pred             CCCc------hHHHHHHhccc-C--cEEEEEeccC
Q psy2961          88 VGGN------SATNLLRTLVS-K--GVMVTYGGMS  113 (202)
Q Consensus        88 ~g~~------~~~~~~~~l~~-~--G~~v~~g~~~  113 (202)
                      .+..      ....+++.++. +  +++|.++...
T Consensus        81 a~~~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~~  115 (352)
T 1xgk_A           81 TTSQAGDEIAIGKDLADAAKRAGTIQHYIYSSMPD  115 (352)
T ss_dssp             CCSTTSCHHHHHHHHHHHHHHHSCCSEEEEEECCC
T ss_pred             CCCCCcHHHHHHHHHHHHHHHcCCccEEEEeCCcc
Confidence            7543      11224444433 3  5899888653

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=97.50  E-value=0.00043  Score=50.31  Aligned_cols=67  Identities=24%  Similarity=0.289  Sum_probs=45.9

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeC---hhHHHh-HHHhhCCCCCeEEEec
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT---EEELRN-ISRDASIPKPKLALNC   87 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~---~~~~~~-~~~~~~~~~~d~vid~   87 (202)
                      .+|||+|++|++|..+++.+...|++|+++.++++..    +      .....|   ..++.. +.+.  .+++|++|.+
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~----~------~~~~~D~~~~~~~~~~~~~~--~~~~d~vi~~   69 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADI----E------ADLSTPGGRETAVAAVLDRC--GGVLDGLVCC   69 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSE----E------CCTTSHHHHHHHHHHHHHHH--TTCCSEEEEC
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHc----c------ccccCCcccHHHHHHHHHHc--CCCccEEEEC
Confidence            3799999999999999998888999999998876531    1      011112   222333 3322  2479999999


Q ss_pred             CCC
Q psy2961          88 VGG   90 (202)
Q Consensus        88 ~g~   90 (202)
                      +|.
T Consensus        70 Ag~   72 (255)
T 2dkn_A           70 AGV   72 (255)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            874

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=97.49  E-value=0.00026  Score=53.82  Aligned_cols=73  Identities=15%  Similarity=0.065  Sum_probs=48.6

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCCCeEEEecCCC
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNCVGG   90 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~vid~~g~   90 (202)
                      .+|||+|++|.+|..+++.+...|.+|++++++++.    .+.+...+...+. |-.+...+.+..  .++|+||.+++.
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~----~~~l~~~~~~~~~~Dl~d~~~~~~~~--~~~d~vih~a~~   87 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQ----IQRLAYLEPECRVAEMLDHAGLERAL--RGLDGVIFSAGY   87 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSC----GGGGGGGCCEEEECCTTCHHHHHHHT--TTCSEEEEC---
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHh----hhhhccCCeEEEEecCCCHHHHHHHH--cCCCEEEECCcc
Confidence            479999999999999999988899999999987663    2223333444333 323322244444  368999999873

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=97.48  E-value=0.00033  Score=53.83  Aligned_cols=80  Identities=9%  Similarity=0.011  Sum_probs=49.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH--CCCcEEEEecCcccHHH---------HHHHHHhcCCceEe-ChhHHHhHHHhhC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARH--WGLKTINIVRNRDDIDK---------LKSYLKSLGADYVF-TEEELRNISRDAS   77 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~--~g~~vi~~~~~~~~~~~---------~~~~~~~lg~~~v~-~~~~~~~~~~~~~   77 (202)
                      .+.+|||+||+|.+|..+++.+..  .|++|+++.++......         ........+...+. |-.+...+.+. .
T Consensus         9 ~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~   87 (362)
T 3sxp_A            9 ENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPLDLRRL-E   87 (362)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCHHHHHHH-T
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCHHHHHHh-h
Confidence            468999999999999999988887  89999999876541000         00111111222222 32222223333 2


Q ss_pred             CCCCeEEEecCCC
Q psy2961          78 IPKPKLALNCVGG   90 (202)
Q Consensus        78 ~~~~d~vid~~g~   90 (202)
                      ..++|+||.+++.
T Consensus        88 ~~~~D~vih~A~~  100 (362)
T 3sxp_A           88 KLHFDYLFHQAAV  100 (362)
T ss_dssp             TSCCSEEEECCCC
T ss_pred             ccCCCEEEECCcc
Confidence            2589999999983

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=97.47  E-value=0.00046  Score=52.47  Aligned_cols=74  Identities=16%  Similarity=0.242  Sum_probs=49.2

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcC----CceEe-C---hhHHHh-HHHhhCCCCC
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG----ADYVF-T---EEELRN-ISRDASIPKP   81 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg----~~~v~-~---~~~~~~-~~~~~~~~~~   81 (202)
                      +.+|||+|++|.+|..+++.+...|++|+++.++++...  .+.++.++    ...+. |   ..++.. +..    .++
T Consensus         3 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----~~~   76 (345)
T 2z1m_A            3 GKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFA--SWRLKELGIENDVKIIHMDLLEFSNIIRTIEK----VQP   76 (345)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTT--THHHHHTTCTTTEEECCCCTTCHHHHHHHHHH----HCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccc--cccHhhccccCceeEEECCCCCHHHHHHHHHh----cCC
Confidence            578999999999999999888889999999988765311  12334332    11111 2   223333 322    268


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |+||.+++.
T Consensus        77 d~vih~A~~   85 (345)
T 2z1m_A           77 DEVYNLAAQ   85 (345)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999874

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=97.47  E-value=0.00015  Score=55.02  Aligned_cols=82  Identities=15%  Similarity=0.157  Sum_probs=48.5

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhc----CCceEe-ChhHHHhHHHhhCCCCC
Q psy2961           7 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL----GADYVF-TEEELRNISRDASIPKP   81 (202)
Q Consensus         7 ~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~l----g~~~v~-~~~~~~~~~~~~~~~~~   81 (202)
                      ..+++.+|||+|++|.+|..+++.+...|.+|++++++.+..  ....++.+    +...+. |-.+...+.+...+.++
T Consensus        10 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~   87 (335)
T 1rpn_A           10 HGSMTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSD--TRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQP   87 (335)
T ss_dssp             -----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSC--CCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCC
T ss_pred             ccccCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCccc--cccchhhccccCceEEEECCCCCHHHHHHHHHHcCC
Confidence            457889999999999999999998888999999998876521  01222222    122222 22222112222211268


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |+||.+++.
T Consensus        88 d~Vih~A~~   96 (335)
T 1rpn_A           88 QEVYNLAAQ   96 (335)
T ss_dssp             SEEEECCSC
T ss_pred             CEEEECccc
Confidence            999999874

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=97.47  E-value=0.00055  Score=51.41  Aligned_cols=70  Identities=13%  Similarity=0.190  Sum_probs=49.3

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhCCCCCeEEEecCC
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNCVG   89 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~~~~~d~vid~~g   89 (202)
                      +.+|||+|++|.+|..+++.+...|.+|++++++++.    .+ ++  +...+.-.-. .+ +.+..  .++|+||.+++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~----~~-~~--~~~~~~~Dl~-~~~~~~~~--~~~d~Vih~a~   71 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGN----KA-IN--DYEYRVSDYT-LEDLINQL--NDVDAVVHLAA   71 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC------------CCEEEECCCC-HHHHHHHT--TTCSEEEECCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCc----cc-CC--ceEEEEcccc-HHHHHHhh--cCCCEEEEccc
Confidence            3689999999999999999999999999999988542    23 33  4444332212 33 55555  38999999987


Q ss_pred             C
Q psy2961          90 G   90 (202)
Q Consensus        90 ~   90 (202)
                      .
T Consensus        72 ~   72 (311)
T 3m2p_A           72 T   72 (311)
T ss_dssp             C
T ss_pred             c
Confidence            4

>4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A

Probab=97.47  E-value=0.00046  Score=53.41  Aligned_cols=83  Identities=18%  Similarity=0.145  Sum_probs=53.3

Q ss_pred             CCCCEEEEeCCCcHHHHH-HHHHHHHCCCcEEEEecCcccHH------------HHHHHHHhcCCceEe---C---hhHH
Q psy2961           9 SPGDVVIQNGANSACGQN-VIQIARHWGLKTINIVRNRDDID------------KLKSYLKSLGADYVF---T---EEEL   69 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~-~i~la~~~g~~vi~~~~~~~~~~------------~~~~~~~~lg~~~v~---~---~~~~   69 (202)
                      ..+++|||+|+++++|++ ++.+|...|+.++.+....+..+            .-.+.+++.|...+.   |   ++..
T Consensus        48 ~~pK~vLVtGaSsGiGlA~AialAf~~GA~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~G~~a~~i~~Dv~d~e~i  127 (401)
T 4ggo_A           48 KAPKNVLVLGCSNGYGLASRITAAFGYGAATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKREGLYSVTIDGDAFSDEIK  127 (401)
T ss_dssp             CCCCEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHH
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHhhCCCCEEEEecCCcccccccccccchhHHHHHHHHHHcCCCceeEeCCCCCHHHH
Confidence            457899999999999998 45666678999988886554211            112455666765433   2   2333


Q ss_pred             Hh-HHHhh-CCCCCeEEEecCCCc
Q psy2961          70 RN-ISRDA-SIPKPKLALNCVGGN   91 (202)
Q Consensus        70 ~~-~~~~~-~~~~~d~vid~~g~~   91 (202)
                      .. +.+.- ..+++|+++.+.+.+
T Consensus       128 ~~vi~~i~~~~G~IDiLVhS~A~~  151 (401)
T 4ggo_A          128 AQVIEEAKKKGIKFDLIVYSLASP  151 (401)
T ss_dssp             HHHHHHHHHTTCCEEEEEECCCCS
T ss_pred             HHHHHHHHHhcCCCCEEEEecccc
Confidence            32 22221 236799999998855

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=97.45  E-value=7.7e-05  Score=55.10  Aligned_cols=74  Identities=18%  Similarity=0.177  Sum_probs=48.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh----HHHhhCCCCCeEEE
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN----ISRDASIPKPKLAL   85 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~----~~~~~~~~~~d~vi   85 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.++.+.    .+....+..+ +-+..+...    +.+..  +++|++|
T Consensus        27 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~----~~~~~~~~~D-v~~~~~~~~~~~~~~~~~--g~iD~lv   99 (266)
T 3uxy_A           27 EGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAG----IAADLHLPGD-LREAAYADGLPGAVAAGL--GRLDIVV   99 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTT----SCCSEECCCC-TTSHHHHHHHHHHHHHHH--SCCCEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH----HHhhhccCcC-CCCHHHHHHHHHHHHHhc--CCCCEEE
Confidence            47899999999999999999999999998888776542    1111111111 112233222    22222  5799999


Q ss_pred             ecCCC
Q psy2961          86 NCVGG   90 (202)
Q Consensus        86 d~~g~   90 (202)
                      .++|.
T Consensus       100 nnAg~  104 (266)
T 3uxy_A          100 NNAGV  104 (266)
T ss_dssp             ECCCC
T ss_pred             ECCCC
Confidence            99884

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=97.45  E-value=0.00031  Score=53.36  Aligned_cols=74  Identities=15%  Similarity=0.167  Sum_probs=48.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhc-CCceEe-C---hhHHHh-HHHhhCCCCCeE
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL-GADYVF-T---EEELRN-ISRDASIPKPKL   83 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~l-g~~~v~-~---~~~~~~-~~~~~~~~~~d~   83 (202)
                      .+.+|||+|++|.+|..+++.+...|++|+++.++.+.   ..+.++.+ +...+. |   ..++.. +.+.    ++|+
T Consensus        19 ~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~---~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~----~~D~   91 (330)
T 2pzm_A           19 SHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATG---KREVLPPVAGLSVIEGSVTDAGLLERAFDSF----KPTH   91 (330)
T ss_dssp             TCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSS---CGGGSCSCTTEEEEECCTTCHHHHHHHHHHH----CCSE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCcc---chhhhhccCCceEEEeeCCCHHHHHHHHhhc----CCCE
Confidence            46799999999999999999988899999999886542   11111222 112221 2   223333 3322    7899


Q ss_pred             EEecCCC
Q psy2961          84 ALNCVGG   90 (202)
Q Consensus        84 vid~~g~   90 (202)
                      ||.++|.
T Consensus        92 vih~A~~   98 (330)
T 2pzm_A           92 VVHSAAA   98 (330)
T ss_dssp             EEECCCC
T ss_pred             EEECCcc
Confidence            9999874

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=97.45  E-value=0.00077  Score=49.14  Aligned_cols=102  Identities=18%  Similarity=0.211  Sum_probs=65.5

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHC--CCcEEEEecCcccHHHHHHHHHhcCCce-Ee-ChhHHHhHHHhhCCC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGADY-VF-TEEELRNISRDASIP   79 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~--g~~vi~~~~~~~~~~~~~~~~~~lg~~~-v~-~~~~~~~~~~~~~~~   79 (202)
                      ....++++++||-.|+|+  |..+..+++..  +.+++++-.+++..+...+.++..|... +. ...|.   .+.....
T Consensus        87 ~~~~~~~~~~vldiG~G~--G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~  161 (255)
T 3mb5_A           87 AYAGISPGDFIVEAGVGS--GALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDI---YEGIEEE  161 (255)
T ss_dssp             HHTTCCTTCEEEEECCTT--SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCG---GGCCCCC
T ss_pred             HhhCCCCCCEEEEecCCc--hHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECch---hhccCCC
Confidence            345678999999999984  88889999885  5677777666553322333334445432 11 11222   2223335


Q ss_pred             CCeEEEecCCCc--hHHHHHHhcccCcEEEEEe
Q psy2961          80 KPKLALNCVGGN--SATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        80 ~~d~vid~~g~~--~~~~~~~~l~~~G~~v~~g  110 (202)
                      .+|+|+.....+  .+..+.+.|+++|+++.+.
T Consensus       162 ~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  194 (255)
T 3mb5_A          162 NVDHVILDLPQPERVVEHAAKALKPGGFFVAYT  194 (255)
T ss_dssp             SEEEEEECSSCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             CcCEEEECCCCHHHHHHHHHHHcCCCCEEEEEE
Confidence            699999876655  3445889999999998864

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=97.45  E-value=0.00013  Score=55.42  Aligned_cols=78  Identities=13%  Similarity=0.125  Sum_probs=48.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhc-CCceEe-ChhHHHhHHHhhCCCCCeEEEec
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL-GADYVF-TEEELRNISRDASIPKPKLALNC   87 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~l-g~~~v~-~~~~~~~~~~~~~~~~~d~vid~   87 (202)
                      .+.+|||+|++|.+|..+++.+...|.+|+++.++.+.   ..+.+.++ +...+. |-.+...+.+...+..+|+||.+
T Consensus        20 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~---~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~vih~   96 (333)
T 2q1w_A           20 HMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATG---RREHLKDHPNLTFVEGSIADHALVNQLIGDLQPDAVVHT   96 (333)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSC---CGGGSCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCcc---chhhHhhcCCceEEEEeCCCHHHHHHHHhccCCcEEEEC
Confidence            46789999999999999999888899999999876542   11122222 222222 32222222222221358999999


Q ss_pred             CCC
Q psy2961          88 VGG   90 (202)
Q Consensus        88 ~g~   90 (202)
                      ++.
T Consensus        97 A~~   99 (333)
T 2q1w_A           97 AAS   99 (333)
T ss_dssp             CCC
T ss_pred             cee
Confidence            874

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=97.44  E-value=0.00028  Score=51.93  Aligned_cols=95  Identities=13%  Similarity=0.074  Sum_probs=64.1

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHC-CCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEec
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNC   87 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~-g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~   87 (202)
                      .++.+||..|+|+  |..+..+++.. |.+++++..+++    ..+.+++.+....+...+...+.  .....+|+|+..
T Consensus        84 ~~~~~vLdiG~G~--G~~~~~l~~~~~~~~v~~vD~s~~----~~~~a~~~~~~~~~~~~d~~~~~--~~~~~fD~v~~~  155 (269)
T 1p91_A           84 DKATAVLDIGCGE--GYYTHAFADALPEITTFGLDVSKV----AIKAAAKRYPQVTFCVASSHRLP--FSDTSMDAIIRI  155 (269)
T ss_dssp             TTCCEEEEETCTT--STTHHHHHHTCTTSEEEEEESCHH----HHHHHHHHCTTSEEEECCTTSCS--BCTTCEEEEEEE
T ss_pred             CCCCEEEEECCCC--CHHHHHHHHhCCCCeEEEEeCCHH----HHHHHHHhCCCcEEEEcchhhCC--CCCCceeEEEEe
Confidence            5789999999984  88899999986 778888776655    46666655433111111111110  122579999976


Q ss_pred             CCCchHHHHHHhcccCcEEEEEec
Q psy2961          88 VGGNSATNLLRTLVSKGVMVTYGG  111 (202)
Q Consensus        88 ~g~~~~~~~~~~l~~~G~~v~~g~  111 (202)
                      .....+..+.+.|+|+|+++.+..
T Consensus       156 ~~~~~l~~~~~~L~pgG~l~~~~~  179 (269)
T 1p91_A          156 YAPCKAEELARVVKPGGWVITATP  179 (269)
T ss_dssp             SCCCCHHHHHHHEEEEEEEEEEEE
T ss_pred             CChhhHHHHHHhcCCCcEEEEEEc
Confidence            555556668999999999998763

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=97.44  E-value=0.00037  Score=50.42  Aligned_cols=101  Identities=14%  Similarity=0.126  Sum_probs=62.5

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHC--CCcEEEEecCcccHHHHHHHHHhcCCce-Ee-ChhHHHh-HHHhh-----
Q psy2961           7 SLSPGDVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGADY-VF-TEEELRN-ISRDA-----   76 (202)
Q Consensus         7 ~~~~g~~VlI~g~~~~vG~~~i~la~~~--g~~vi~~~~~~~~~~~~~~~~~~lg~~~-v~-~~~~~~~-~~~~~-----   76 (202)
                      +..++++||-.|+|  .|..+..+++..  +.+++++-.+++......+.++..|... +- ...+..+ +....     
T Consensus        57 ~~~~~~~VLdiG~G--~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~  134 (239)
T 2hnk_A           57 KISGAKRIIEIGTF--TGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSA  134 (239)
T ss_dssp             HHHTCSEEEEECCT--TCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSC
T ss_pred             HhhCcCEEEEEeCC--CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccc
Confidence            45678999999987  588899999987  5677777766653322333344445432 11 1122222 22221     


Q ss_pred             -------C-C-CCCeEEEecCCCchH----HHHHHhcccCcEEEEE
Q psy2961          77 -------S-I-PKPKLALNCVGGNSA----TNLLRTLVSKGVMVTY  109 (202)
Q Consensus        77 -------~-~-~~~d~vid~~g~~~~----~~~~~~l~~~G~~v~~  109 (202)
                             . + ..+|+|+.....+..    ..+.+.|+++|.++..
T Consensus       135 ~~~~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~  180 (239)
T 2hnk_A          135 PSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIAD  180 (239)
T ss_dssp             CGGGTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccccccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence                   1 1 579999877665432    3367899999999874

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=97.43  E-value=0.0016  Score=49.14  Aligned_cols=87  Identities=14%  Similarity=0.180  Sum_probs=62.7

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhCCCCCeEEEec
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNC   87 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~~~~~d~vid~   87 (202)
                      -.|.+|.|.|.| .+|...++.++..|++|++..++.+    + +.+.++|+...    ++.+ +      ...|+|+-+
T Consensus       140 l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~d~~~~----~-~~~~~~g~~~~----~l~ell------~~aDvV~l~  203 (307)
T 1wwk_A          140 LEGKTIGIIGFG-RIGYQVAKIANALGMNILLYDPYPN----E-ERAKEVNGKFV----DLETLL------KESDVVTIH  203 (307)
T ss_dssp             CTTCEEEEECCS-HHHHHHHHHHHHTTCEEEEECSSCC----H-HHHHHTTCEEC----CHHHHH------HHCSEEEEC
T ss_pred             cCCceEEEEccC-HHHHHHHHHHHHCCCEEEEECCCCC----h-hhHhhcCcccc----CHHHHH------hhCCEEEEe
Confidence            468899999998 9999999999999999988877665    2 44566776532    2333 3      245888887


Q ss_pred             CCCch-----H-HHHHHhcccCcEEEEEec
Q psy2961          88 VGGNS-----A-TNLLRTLVSKGVMVTYGG  111 (202)
Q Consensus        88 ~g~~~-----~-~~~~~~l~~~G~~v~~g~  111 (202)
                      +....     . ...+..|++++.++.++.
T Consensus       204 ~p~~~~t~~li~~~~l~~mk~ga~lin~ar  233 (307)
T 1wwk_A          204 VPLVESTYHLINEERLKLMKKTAILINTSR  233 (307)
T ss_dssp             CCCSTTTTTCBCHHHHHHSCTTCEEEECSC
T ss_pred             cCCChHHhhhcCHHHHhcCCCCeEEEECCC
Confidence            75322     1 236788899998888764

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=97.42  E-value=0.0008  Score=51.19  Aligned_cols=79  Identities=18%  Similarity=0.238  Sum_probs=48.2

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCc-ccHHHHHHHHHhcC-CceEe-ChhHHHhHHHhhCCCCCeEEEecC
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNR-DDIDKLKSYLKSLG-ADYVF-TEEELRNISRDASIPKPKLALNCV   88 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~-~~~~~~~~~~~~lg-~~~v~-~~~~~~~~~~~~~~~~~d~vid~~   88 (202)
                      .+|||+|++|.+|..+++.+...|.+|+++.+.. ....+..+.+...+ ...+. |-.+...+.+...+.++|+||.++
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A   81 (347)
T 1orr_A            2 AKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLA   81 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             cEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCCCccCchhhhhhhccCCceEEEEcCCCCHHHHHHHHhccCCCEEEECC
Confidence            3799999999999999998888999999987642 22111233333333 22222 322222122222112589999999


Q ss_pred             CC
Q psy2961          89 GG   90 (202)
Q Consensus        89 g~   90 (202)
                      +.
T Consensus        82 ~~   83 (347)
T 1orr_A           82 GQ   83 (347)
T ss_dssp             CC
T ss_pred             cc
Confidence            84

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=97.42  E-value=0.00056  Score=51.23  Aligned_cols=95  Identities=17%  Similarity=0.273  Sum_probs=59.7

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccH--HHHHHHH---HhcCCceEe-ChhHHHhHHHhhCCCCCeEE
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDI--DKLKSYL---KSLGADYVF-TEEELRNISRDASIPKPKLA   84 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~--~~~~~~~---~~lg~~~v~-~~~~~~~~~~~~~~~~~d~v   84 (202)
                      ..+|+|+|++|.+|..+++.+...|.+|++++++....  .++.+.+   ...+...+. |..+...+.+..  .++|+|
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~--~~~d~v   81 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAV--KNVDVV   81 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHH--HTCSEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHH--cCCCEE
Confidence            46799999999999999999888999999988875321  1223323   334555443 333333333333  368999


Q ss_pred             EecCCCch---HHHHHHhccc---CcEEE
Q psy2961          85 LNCVGGNS---ATNLLRTLVS---KGVMV  107 (202)
Q Consensus        85 id~~g~~~---~~~~~~~l~~---~G~~v  107 (202)
                      |.+++...   ...+++.++.   -.+++
T Consensus        82 i~~a~~~~~~~~~~l~~aa~~~g~v~~~v  110 (308)
T 1qyc_A           82 ISTVGSLQIESQVNIIKAIKEVGTVKRFF  110 (308)
T ss_dssp             EECCCGGGSGGGHHHHHHHHHHCCCSEEE
T ss_pred             EECCcchhhhhHHHHHHHHHhcCCCceEe
Confidence            99998643   2234554433   24676

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=97.41  E-value=0.00019  Score=51.75  Aligned_cols=101  Identities=11%  Similarity=0.155  Sum_probs=61.6

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHC-CCcEEEEecCcccHHHHHHHHHhcCCce-E-eChhHHHh-HHHhhCCCCCe
Q psy2961           7 SLSPGDVVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADY-V-FTEEELRN-ISRDASIPKPK   82 (202)
Q Consensus         7 ~~~~g~~VlI~g~~~~vG~~~i~la~~~-g~~vi~~~~~~~~~~~~~~~~~~lg~~~-v-~~~~~~~~-~~~~~~~~~~d   82 (202)
                      ...++++||-.|+|  .|..++.+++.. +.+++++..+++......+.++..|... + +...+..+ +........+|
T Consensus        51 ~~~~~~~vLdiG~G--~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD  128 (233)
T 2gpy_A           51 KMAAPARILEIGTA--IGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFD  128 (233)
T ss_dssp             HHHCCSEEEEECCT--TSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEE
T ss_pred             hccCCCEEEEecCC--CcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCcc
Confidence            44678999999987  588888999887 5677777766653322233334445421 1 11123222 33222235799


Q ss_pred             EEEecCCCch----HHHHHHhcccCcEEEEE
Q psy2961          83 LALNCVGGNS----ATNLLRTLVSKGVMVTY  109 (202)
Q Consensus        83 ~vid~~g~~~----~~~~~~~l~~~G~~v~~  109 (202)
                      +|+.....+.    +..+.+.|+++|.++..
T Consensus       129 ~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~  159 (233)
T 2gpy_A          129 VLFIDAAKGQYRRFFDMYSPMVRPGGLILSD  159 (233)
T ss_dssp             EEEEEGGGSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            9987655322    23367889999999875

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.40  E-value=0.0006  Score=51.54  Aligned_cols=98  Identities=12%  Similarity=0.095  Sum_probs=55.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcccHHHHHHHHHh----cCCc-eEeChhHHHhHHHhhCCCCCeE
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKS----LGAD-YVFTEEELRNISRDASIPKPKL   83 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~~~~~~~~~~~~----lg~~-~v~~~~~~~~~~~~~~~~~~d~   83 (202)
                      .|.+++|+|+| ++|.+++..+...|+ +++++.++++..+...+.+++    .+.. .+++.++..++.+..  ..+|+
T Consensus       153 ~gk~~lVlGaG-G~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l--~~aDi  229 (315)
T 3tnl_A          153 IGKKMTICGAG-GAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEI--AESVI  229 (315)
T ss_dssp             TTSEEEEECCS-HHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHH--HTCSE
T ss_pred             cCCEEEEECCC-hHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhh--cCCCE
Confidence            57899999997 999999999999999 566666662211112222222    2322 222333222222222  36799


Q ss_pred             EEecCCCchHH------H-HHHhcccCcEEEEEe
Q psy2961          84 ALNCVGGNSAT------N-LLRTLVSKGVMVTYG  110 (202)
Q Consensus        84 vid~~g~~~~~------~-~~~~l~~~G~~v~~g  110 (202)
                      ||+|++-....      - ....++++..++.+.
T Consensus       230 IINaTp~Gm~~~~~~~p~~~~~~l~~~~~V~Dlv  263 (315)
T 3tnl_A          230 FTNATGVGMKPFEGETLLPSADMLRPELIVSDVV  263 (315)
T ss_dssp             EEECSSTTSTTSTTCCSCCCGGGCCTTCEEEESC
T ss_pred             EEECccCCCCCCCCCCCCCcHHHcCCCCEEEEec
Confidence            99998632110      0 234566666666654

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=97.40  E-value=0.0004  Score=52.37  Aligned_cols=74  Identities=9%  Similarity=0.115  Sum_probs=47.5

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCCCeEEEec
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNC   87 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~vid~   87 (202)
                      .+-.+|||+||+|.+|..+++.+...|++|+++.++++.     +.   ++...+. |-.+...+.+...+.++|+||.+
T Consensus        10 ~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-----~~---l~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~   81 (321)
T 2pk3_A           10 HGSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEA-----KL---PNVEMISLDIMDSQRVKKVISDIKPDYIFHL   81 (321)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTC-----CC---TTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             cCcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcc-----cc---ceeeEEECCCCCHHHHHHHHHhcCCCEEEEc
Confidence            455789999999999999999988899999998877652     11   2333222 22222212222222458999999


Q ss_pred             CCC
Q psy2961          88 VGG   90 (202)
Q Consensus        88 ~g~   90 (202)
                      ++.
T Consensus        82 A~~   84 (321)
T 2pk3_A           82 AAK   84 (321)
T ss_dssp             CSC
T ss_pred             Ccc
Confidence            874

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=97.39  E-value=0.00078  Score=51.36  Aligned_cols=70  Identities=14%  Similarity=0.140  Sum_probs=47.9

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCCCeEEEec
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNC   87 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~vid~   87 (202)
                      ..+.+|||+||+|.+|..+++.+...|++|+++.++++.          .+...+. |-.+...+.+..  .++|+||.+
T Consensus        17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~----------~~~~~~~~Dl~d~~~~~~~~--~~~d~vih~   84 (347)
T 4id9_A           17 RGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG----------TGGEEVVGSLEDGQALSDAI--MGVSAVLHL   84 (347)
T ss_dssp             ----CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS----------SCCSEEESCTTCHHHHHHHH--TTCSEEEEC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC----------CCccEEecCcCCHHHHHHHH--hCCCEEEEC
Confidence            456789999999999999999999999999999887752          2334333 322322233333  378999998


Q ss_pred             CCC
Q psy2961          88 VGG   90 (202)
Q Consensus        88 ~g~   90 (202)
                      ++.
T Consensus        85 A~~   87 (347)
T 4id9_A           85 GAF   87 (347)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            864

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=97.39  E-value=0.0027  Score=45.47  Aligned_cols=99  Identities=14%  Similarity=0.033  Sum_probs=60.4

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHC--CCcEEEEecCcccHHHHHHHHHhcCCc--eEe-ChhHHHh-HHHhhCCCCC
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGAD--YVF-TEEELRN-ISRDASIPKP   81 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~--g~~vi~~~~~~~~~~~~~~~~~~lg~~--~v~-~~~~~~~-~~~~~~~~~~   81 (202)
                      .+++.+||-.|+|  .|..++.+|+..  +.+++++-.+++......+.++..|..  .+- -..+..+ +... ....|
T Consensus        54 ~~~~~~vLdiG~G--~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~-~~~~f  130 (221)
T 3dr5_A           54 GNGSTGAIAITPA--AGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRL-ANDSY  130 (221)
T ss_dssp             CTTCCEEEEESTT--HHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGS-CTTCE
T ss_pred             CCCCCCEEEEcCC--chHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHh-cCCCc
Confidence            3455699988886  688899999976  577777776665433333444555543  221 1223323 2221 13579


Q ss_pred             eEEEecCCCch----HHHHHHhcccCcEEEEE
Q psy2961          82 KLALNCVGGNS----ATNLLRTLVSKGVMVTY  109 (202)
Q Consensus        82 d~vid~~g~~~----~~~~~~~l~~~G~~v~~  109 (202)
                      |+||-......    +..+.+.|+|||.++.-
T Consensus       131 D~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d  162 (221)
T 3dr5_A          131 QLVFGQVSPMDLKALVDAAWPLLRRGGALVLA  162 (221)
T ss_dssp             EEEEECCCTTTHHHHHHHHHHHEEEEEEEEET
T ss_pred             CeEEEcCcHHHHHHHHHHHHHHcCCCcEEEEe
Confidence            99875444332    23467899999999873

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=97.38  E-value=0.00079  Score=51.56  Aligned_cols=81  Identities=10%  Similarity=0.084  Sum_probs=49.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHH-hcCCceEe-ChhHHHhHHHhhCCCCCeEEEec
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK-SLGADYVF-TEEELRNISRDASIPKPKLALNC   87 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~-~lg~~~v~-~~~~~~~~~~~~~~~~~d~vid~   87 (202)
                      .+.+|||+|++|.+|..+++.+...|++|+++.++.+......+.+. .-+...+. |-.+...+.+...+.++|+||.+
T Consensus         8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~   87 (357)
T 1rkx_A            8 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFHM   87 (357)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhhccCCceEEEEccccCHHHHHHHHHhcCCCEEEEC
Confidence            46799999999999999999888899999999887653111111111 01222222 32222112222211268999999


Q ss_pred             CCC
Q psy2961          88 VGG   90 (202)
Q Consensus        88 ~g~   90 (202)
                      ++.
T Consensus        88 A~~   90 (357)
T 1rkx_A           88 AAQ   90 (357)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            984

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=97.38  E-value=0.00087  Score=53.63  Aligned_cols=90  Identities=12%  Similarity=0.168  Sum_probs=65.1

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCV   88 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~   88 (202)
                      -.|.+|.|.|.| .+|..+++.++.+|++|++...+..    +.......|... .   ++.   +..  ...|+|+-++
T Consensus       275 L~GktVgIIG~G-~IG~~vA~~l~~~G~~V~v~d~~~~----~~~~a~~~G~~~-~---~l~---ell--~~aDiVi~~~  340 (494)
T 3d64_A          275 IAGKIAVVAGYG-DVGKGCAQSLRGLGATVWVTEIDPI----CALQAAMEGYRV-V---TME---YAA--DKADIFVTAT  340 (494)
T ss_dssp             CTTCEEEEECCS-HHHHHHHHHHHTTTCEEEEECSCHH----HHHHHHTTTCEE-C---CHH---HHT--TTCSEEEECS
T ss_pred             cCCCEEEEEccC-HHHHHHHHHHHHCCCEEEEEeCChH----hHHHHHHcCCEe-C---CHH---HHH--hcCCEEEECC
Confidence            478999999998 9999999999999999888776653    222233445542 2   222   222  4679999998


Q ss_pred             CCchHH--HHHHhcccCcEEEEEecc
Q psy2961          89 GGNSAT--NLLRTLVSKGVMVTYGGM  112 (202)
Q Consensus        89 g~~~~~--~~~~~l~~~G~~v~~g~~  112 (202)
                      +.....  ..+..|+++..++.++..
T Consensus       341 ~t~~lI~~~~l~~MK~gAilINvgrg  366 (494)
T 3d64_A          341 GNYHVINHDHMKAMRHNAIVCNIGHF  366 (494)
T ss_dssp             SSSCSBCHHHHHHCCTTEEEEECSSS
T ss_pred             CcccccCHHHHhhCCCCcEEEEcCCC
Confidence            765543  478899999999998853

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.38  E-value=0.00093  Score=49.46  Aligned_cols=90  Identities=11%  Similarity=0.049  Sum_probs=56.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcccHHHHHHHHHhcCC--ceEeChhHHHhHHHhhCCCCCeEEEe
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGA--DYVFTEEELRNISRDASIPKPKLALN   86 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~--~~v~~~~~~~~~~~~~~~~~~d~vid   86 (202)
                      .+.+++|+|+| ++|.+++..+...|+ +++++.++.++   ..+.+++++.  ..+...+++   .   . .++|+||+
T Consensus       119 ~~k~~lvlGaG-g~~~aia~~L~~~G~~~v~i~~R~~~~---a~~la~~~~~~~~~~~~~~~l---~---~-~~~DivIn  187 (272)
T 3pwz_A          119 RNRRVLLLGAG-GAVRGALLPFLQAGPSELVIANRDMAK---ALALRNELDHSRLRISRYEAL---E---G-QSFDIVVN  187 (272)
T ss_dssp             TTSEEEEECCS-HHHHHHHHHHHHTCCSEEEEECSCHHH---HHHHHHHHCCTTEEEECSGGG---T---T-CCCSEEEE
T ss_pred             cCCEEEEECcc-HHHHHHHHHHHHcCCCEEEEEeCCHHH---HHHHHHHhccCCeeEeeHHHh---c---c-cCCCEEEE
Confidence            67899999997 899999988888997 56566555542   2233344543  222222221   1   1 57899999


Q ss_pred             cCCCchHHH----HHHhcccCcEEEEEe
Q psy2961          87 CVGGNSATN----LLRTLVSKGVMVTYG  110 (202)
Q Consensus        87 ~~g~~~~~~----~~~~l~~~G~~v~~g  110 (202)
                      |++......    ....++++..++.+.
T Consensus       188 aTp~gm~~~~~~i~~~~l~~~~~V~Dlv  215 (272)
T 3pwz_A          188 ATSASLTADLPPLPADVLGEAALAYELA  215 (272)
T ss_dssp             CSSGGGGTCCCCCCGGGGTTCSEEEESS
T ss_pred             CCCCCCCCCCCCCCHHHhCcCCEEEEee
Confidence            987432111    134567777777664

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=97.38  E-value=0.014  Score=44.46  Aligned_cols=88  Identities=9%  Similarity=-0.004  Sum_probs=57.6

Q ss_pred             CEEEEeCCCcHHHHHHHHHHH-H-CCCcEEEEecCcccHHHHH-HHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecC
Q psy2961          12 DVVIQNGANSACGQNVIQIAR-H-WGLKTINIVRNRDDIDKLK-SYLKSLGADYVFTEEELRNISRDASIPKPKLALNCV   88 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~-~-~g~~vi~~~~~~~~~~~~~-~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~   88 (202)
                      -+|.|.|+| .+|...++.++ . .+++++++++....   +. +..+++|...+++  ++.+   .....++|+|+.|+
T Consensus         9 ~~v~iiG~G-~ig~~~~~~l~~~~~~~~~vav~d~~~~---~~~~~a~~~g~~~~~~--~~~~---~l~~~~~D~V~i~t   79 (346)
T 3cea_A            9 LRAAIIGLG-RLGERHARHLVNKIQGVKLVAACALDSN---QLEWAKNELGVETTYT--NYKD---MIDTENIDAIFIVA   79 (346)
T ss_dssp             EEEEEECCS-TTHHHHHHHHHHTCSSEEEEEEECSCHH---HHHHHHHTTCCSEEES--CHHH---HHTTSCCSEEEECS
T ss_pred             ceEEEEcCC-HHHHHHHHHHHhcCCCcEEEEEecCCHH---HHHHHHHHhCCCcccC--CHHH---HhcCCCCCEEEEeC
Confidence            479999997 89988777766 4 47788888876643   33 3446678755542  3333   22224799999999


Q ss_pred             CCchHHH-HHHhcccCcEEEEE
Q psy2961          89 GGNSATN-LLRTLVSKGVMVTY  109 (202)
Q Consensus        89 g~~~~~~-~~~~l~~~G~~v~~  109 (202)
                      ....... +..+++.|- -|++
T Consensus        80 p~~~h~~~~~~al~~G~-~v~~  100 (346)
T 3cea_A           80 PTPFHPEMTIYAMNAGL-NVFC  100 (346)
T ss_dssp             CGGGHHHHHHHHHHTTC-EEEE
T ss_pred             ChHhHHHHHHHHHHCCC-EEEE
Confidence            8765444 566777654 4444

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=97.36  E-value=0.001  Score=50.18  Aligned_cols=101  Identities=12%  Similarity=0.200  Sum_probs=63.9

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCce-E-eChhHHHhHHHhhCCCCC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-V-FTEEELRNISRDASIPKP   81 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-v-~~~~~~~~~~~~~~~~~~   81 (202)
                      +...+.++++||-.|+|.  |..+..+++..|++++++.-+++..+...+.+...|... + +...|.   .+. + ..+
T Consensus        84 ~~~~~~~~~~vLDiGcG~--G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~-~-~~f  156 (318)
T 2fk8_A           84 DKLDLKPGMTLLDIGCGW--GTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGW---EDF-A-EPV  156 (318)
T ss_dssp             TTSCCCTTCEEEEESCTT--SHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCG---GGC-C-CCC
T ss_pred             HhcCCCCcCEEEEEcccc--hHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCh---HHC-C-CCc
Confidence            345678999999999974  888889998879998888877764322233333344321 1 111121   111 1 579


Q ss_pred             eEEEec-----CCCch----HHHHHHhcccCcEEEEEec
Q psy2961          82 KLALNC-----VGGNS----ATNLLRTLVSKGVMVTYGG  111 (202)
Q Consensus        82 d~vid~-----~g~~~----~~~~~~~l~~~G~~v~~g~  111 (202)
                      |+|+..     .+.+.    +..+.+.|+|+|+++....
T Consensus       157 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  195 (318)
T 2fk8_A          157 DRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSS  195 (318)
T ss_dssp             SEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             CEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            999876     33222    2236789999999998653

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=97.36  E-value=0.0011  Score=52.92  Aligned_cols=91  Identities=16%  Similarity=0.204  Sum_probs=65.7

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEec
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNC   87 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~   87 (202)
                      .-.|.+|.|.|.| .+|..+++.++.+|++|++...+..    +...+...|.. +.   ++   .+..  ...|+|+-+
T Consensus       254 ~l~GktVgIIG~G-~IG~~vA~~l~~~G~~Viv~d~~~~----~~~~a~~~g~~-~~---~l---~ell--~~aDiVi~~  319 (479)
T 1v8b_A          254 LISGKIVVICGYG-DVGKGCASSMKGLGARVYITEIDPI----CAIQAVMEGFN-VV---TL---DEIV--DKGDFFITC  319 (479)
T ss_dssp             CCTTSEEEEECCS-HHHHHHHHHHHHHTCEEEEECSCHH----HHHHHHTTTCE-EC---CH---HHHT--TTCSEEEEC
T ss_pred             ccCCCEEEEEeeC-HHHHHHHHHHHhCcCEEEEEeCChh----hHHHHHHcCCE-ec---CH---HHHH--hcCCEEEEC
Confidence            3478999999988 9999999999999999888776653    22234445553 22   22   2222  467999998


Q ss_pred             CCCchHH--HHHHhcccCcEEEEEecc
Q psy2961          88 VGGNSAT--NLLRTLVSKGVMVTYGGM  112 (202)
Q Consensus        88 ~g~~~~~--~~~~~l~~~G~~v~~g~~  112 (202)
                      .+.....  ..+..|++++.++.++..
T Consensus       320 ~~t~~lI~~~~l~~MK~gailiNvgrg  346 (479)
T 1v8b_A          320 TGNVDVIKLEHLLKMKNNAVVGNIGHF  346 (479)
T ss_dssp             CSSSSSBCHHHHTTCCTTCEEEECSST
T ss_pred             CChhhhcCHHHHhhcCCCcEEEEeCCC
Confidence            8766543  477889999999998843

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=97.35  E-value=0.00069  Score=49.38  Aligned_cols=102  Identities=15%  Similarity=0.146  Sum_probs=62.3

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHC--CCcEEEEecCcccHHHHHHHHHhcCCc-eE-eChhHHHh-HHHhhCCCCC
Q psy2961           7 SLSPGDVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGAD-YV-FTEEELRN-ISRDASIPKP   81 (202)
Q Consensus         7 ~~~~g~~VlI~g~~~~vG~~~i~la~~~--g~~vi~~~~~~~~~~~~~~~~~~lg~~-~v-~~~~~~~~-~~~~~~~~~~   81 (202)
                      .+.++.+||-.|+|  .|..++.+++..  +.+++++-.+++......+.++..|.. .+ +-..|..+ +........+
T Consensus        60 ~~~~~~~VLdiG~G--~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~f  137 (248)
T 3tfw_A           60 RLTQAKRILEIGTL--GGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAF  137 (248)
T ss_dssp             HHHTCSEEEEECCT--TSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCC
T ss_pred             hhcCCCEEEEecCC--chHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCe
Confidence            45678999999987  488889999887  467777776665433333444445543 11 11223333 3332223479


Q ss_pred             eEEEecCCCch----HHHHHHhcccCcEEEEEe
Q psy2961          82 KLALNCVGGNS----ATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        82 d~vid~~g~~~----~~~~~~~l~~~G~~v~~g  110 (202)
                      |+|+-....+.    +..+.+.|+|||.++.-.
T Consensus       138 D~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~~~  170 (248)
T 3tfw_A          138 DLIFIDADKPNNPHYLRWALRYSRPGTLIIGDN  170 (248)
T ss_dssp             SEEEECSCGGGHHHHHHHHHHTCCTTCEEEEEC
T ss_pred             EEEEECCchHHHHHHHHHHHHhcCCCeEEEEeC
Confidence            99984333322    234678999999887743

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=97.34  E-value=0.00062  Score=51.90  Aligned_cols=80  Identities=10%  Similarity=0.065  Sum_probs=49.0

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCccc------HHHHHHHHHh-cC--CceEe-ChhHHHhHHHhhCCCC
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD------IDKLKSYLKS-LG--ADYVF-TEEELRNISRDASIPK   80 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~------~~~~~~~~~~-lg--~~~v~-~~~~~~~~~~~~~~~~   80 (202)
                      +.+|||+|++|.+|..+++.+...|++|+++.++...      ..+..+.+++ .+  ...+. |-.+...+.+.....+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   81 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYS   81 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHHHHHHHHhcC
Confidence            4689999999999999998888889999998764321      1112333333 22  23222 3222211222221127


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|+||.+++.
T Consensus        82 ~d~vih~A~~   91 (348)
T 1ek6_A           82 FMAVIHFAGL   91 (348)
T ss_dssp             EEEEEECCSC
T ss_pred             CCEEEECCCC
Confidence            8999999874

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=97.34  E-value=0.0015  Score=45.83  Aligned_cols=62  Identities=15%  Similarity=0.202  Sum_probs=43.8

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhCCCCCeEEEecCC
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNCVG   89 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~~~~~d~vid~~g   89 (202)
                      +|||+|++|++|..+++.+. .|++|+.+.++.+          ...++ +.+++++.. +...   +++|++|.++|
T Consensus         5 ~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~----------~~~~D-~~~~~~~~~~~~~~---~~~d~vi~~ag   67 (202)
T 3d7l_A            5 KILLIGASGTLGSAVKERLE-KKAEVITAGRHSG----------DVTVD-ITNIDSIKKMYEQV---GKVDAIVSATG   67 (202)
T ss_dssp             EEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSS----------SEECC-TTCHHHHHHHHHHH---CCEEEEEECCC
T ss_pred             EEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCcc----------ceeee-cCCHHHHHHHHHHh---CCCCEEEECCC
Confidence            79999999999999998888 8999988887653          00011 112344444 4433   47899999987

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=97.34  E-value=0.0014  Score=49.98  Aligned_cols=88  Identities=16%  Similarity=0.065  Sum_probs=63.5

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCV   88 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~   88 (202)
                      -.|.+|.|.|.| .+|...++.++.+|++|++..++.+    + +.+.++|+.. .   ++.+   ..  ...|+|+-++
T Consensus       163 l~g~tvgIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~----~-~~~~~~g~~~-~---~l~e---ll--~~aDvV~l~~  227 (335)
T 2g76_A          163 LNGKTLGILGLG-RIGREVATRMQSFGMKTIGYDPIIS----P-EVSASFGVQQ-L---PLEE---IW--PLCDFITVHT  227 (335)
T ss_dssp             CTTCEEEEECCS-HHHHHHHHHHHTTTCEEEEECSSSC----H-HHHHHTTCEE-C---CHHH---HG--GGCSEEEECC
T ss_pred             CCcCEEEEEeEC-HHHHHHHHHHHHCCCEEEEECCCcc----h-hhhhhcCcee-C---CHHH---HH--hcCCEEEEec
Confidence            468899999998 9999999999999999888776654    2 3456677653 1   2222   11  3568988877


Q ss_pred             CCch-----H-HHHHHhcccCcEEEEEec
Q psy2961          89 GGNS-----A-TNLLRTLVSKGVMVTYGG  111 (202)
Q Consensus        89 g~~~-----~-~~~~~~l~~~G~~v~~g~  111 (202)
                      ....     + ...+..|++++.++.++.
T Consensus       228 P~t~~t~~li~~~~l~~mk~gailIN~ar  256 (335)
T 2g76_A          228 PLLPSTTGLLNDNTFAQCKKGVRVVNCAR  256 (335)
T ss_dssp             CCCTTTTTSBCHHHHTTSCTTEEEEECSC
T ss_pred             CCCHHHHHhhCHHHHhhCCCCcEEEECCC
Confidence            6432     1 236788999999998874

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=97.31  E-value=0.0012  Score=49.12  Aligned_cols=89  Identities=11%  Similarity=0.046  Sum_probs=54.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcccHHHHHHHHHhcCC---ceEeChhHHHhHHHhhCCCCCeEEE
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGA---DYVFTEEELRNISRDASIPKPKLAL   85 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~---~~v~~~~~~~~~~~~~~~~~~d~vi   85 (202)
                      .+.+++|+|+| ++|.+++..+...|+ +++++.++.++   ..+.+++++.   ..+...++   +    . .++|+||
T Consensus       125 ~~k~vlvlGaG-g~g~aia~~L~~~G~~~v~v~~R~~~~---a~~la~~~~~~~~~~~~~~~~---l----~-~~aDiII  192 (281)
T 3o8q_A          125 KGATILLIGAG-GAARGVLKPLLDQQPASITVTNRTFAK---AEQLAELVAAYGEVKAQAFEQ---L----K-QSYDVII  192 (281)
T ss_dssp             TTCEEEEECCS-HHHHHHHHHHHTTCCSEEEEEESSHHH---HHHHHHHHGGGSCEEEEEGGG---C----C-SCEEEEE
T ss_pred             cCCEEEEECch-HHHHHHHHHHHhcCCCeEEEEECCHHH---HHHHHHHhhccCCeeEeeHHH---h----c-CCCCEEE
Confidence            57899999997 899999988888997 66666666543   1223333332   12222222   1    1 5789999


Q ss_pred             ecCCCchHHH----HHHhcccCcEEEEEe
Q psy2961          86 NCVGGNSATN----LLRTLVSKGVMVTYG  110 (202)
Q Consensus        86 d~~g~~~~~~----~~~~l~~~G~~v~~g  110 (202)
                      +|++......    ....++++..++.+.
T Consensus       193 naTp~gm~~~~~~l~~~~l~~~~~V~Dlv  221 (281)
T 3o8q_A          193 NSTSASLDGELPAIDPVIFSSRSVCYDMM  221 (281)
T ss_dssp             ECSCCCC----CSCCGGGEEEEEEEEESC
T ss_pred             EcCcCCCCCCCCCCCHHHhCcCCEEEEec
Confidence            9997543211    124566666666654

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=97.30  E-value=0.00052  Score=51.96  Aligned_cols=102  Identities=17%  Similarity=0.218  Sum_probs=65.2

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCC--CcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHh-HHHhhCCC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWG--LKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRN-ISRDASIP   79 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g--~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~-~~~~~~~~   79 (202)
                      +...+++|++||-.|+|.  |..++.+++..+  .+|+++..+++..+...+.++..|...+. ...|..+ ..   ...
T Consensus        69 ~~l~~~~~~~VLDiGcG~--G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~---~~~  143 (317)
T 1dl5_A           69 EWVGLDKGMRVLEIGGGT--GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP---EFS  143 (317)
T ss_dssp             HHTTCCTTCEEEEECCTT--SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG---GGC
T ss_pred             HhcCCCCcCEEEEecCCc--hHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccc---cCC
Confidence            345678999999999984  788888888653  35888887776433333344445543221 1122222 21   125


Q ss_pred             CCeEEEecCCCchHH-HHHHhcccCcEEEEEe
Q psy2961          80 KPKLALNCVGGNSAT-NLLRTLVSKGVMVTYG  110 (202)
Q Consensus        80 ~~d~vid~~g~~~~~-~~~~~l~~~G~~v~~g  110 (202)
                      .+|+|+....-.... .+.+.|+|+|+++..-
T Consensus       144 ~fD~Iv~~~~~~~~~~~~~~~LkpgG~lvi~~  175 (317)
T 1dl5_A          144 PYDVIFVTVGVDEVPETWFTQLKEGGRVIVPI  175 (317)
T ss_dssp             CEEEEEECSBBSCCCHHHHHHEEEEEEEEEEB
T ss_pred             CeEEEEEcCCHHHHHHHHHHhcCCCcEEEEEE
Confidence            799999876555443 4788999999998764

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=97.29  E-value=0.00099  Score=51.53  Aligned_cols=77  Identities=8%  Similarity=-0.004  Sum_probs=49.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC-CcEEEEecCcccHHHHHHHHH-hcCCceEe-ChhHHHhHHHhhCCCCCeEEEe
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWG-LKTINIVRNRDDIDKLKSYLK-SLGADYVF-TEEELRNISRDASIPKPKLALN   86 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g-~~vi~~~~~~~~~~~~~~~~~-~lg~~~v~-~~~~~~~~~~~~~~~~~d~vid   86 (202)
                      .+.+|||+|++|.+|..+++.+...| .+|+++.++.+..   .+.+. .-+...+. |-.+...+.+..  .++|+||.
T Consensus        31 ~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~---~~~l~~~~~v~~~~~Dl~d~~~l~~~~--~~~d~Vih  105 (377)
T 2q1s_A           31 ANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAE---KINVPDHPAVRFSETSITDDALLASLQ--DEYDYVFH  105 (377)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCC---GGGSCCCTTEEEECSCTTCHHHHHHCC--SCCSEEEE
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCc---hhhccCCCceEEEECCCCCHHHHHHHh--hCCCEEEE
Confidence            45789999999999999999988899 9999988765421   11111 11112221 222222244433  37999999


Q ss_pred             cCCCc
Q psy2961          87 CVGGN   91 (202)
Q Consensus        87 ~~g~~   91 (202)
                      +++..
T Consensus       106 ~A~~~  110 (377)
T 2q1s_A          106 LATYH  110 (377)
T ss_dssp             CCCCS
T ss_pred             CCCcc
Confidence            98753

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=97.29  E-value=0.0016  Score=48.19  Aligned_cols=101  Identities=18%  Similarity=0.150  Sum_probs=63.3

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHC--CCcEEEEecCcccHHHHHHHHHhcCC-ceEe-ChhHHHhHHHhhCCCC
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGA-DYVF-TEEELRNISRDASIPK   80 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~--g~~vi~~~~~~~~~~~~~~~~~~lg~-~~v~-~~~~~~~~~~~~~~~~   80 (202)
                      ...+.++++||-.|+|+  |..++.+++..  +.+++++..+++..+...+.++..+. +.+. ...|.   .+......
T Consensus       107 ~~~~~~~~~VLDiG~G~--G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~  181 (277)
T 1o54_A          107 MLDVKEGDRIIDTGVGS--GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDI---SEGFDEKD  181 (277)
T ss_dssp             HTTCCTTCEEEEECCTT--SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCG---GGCCSCCS
T ss_pred             HhCCCCCCEEEEECCcC--CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCH---HHcccCCc
Confidence            34678899999999984  88888999886  45777776666532222233334454 1111 11222   22223356


Q ss_pred             CeEEEecCCCc-h-HHHHHHhcccCcEEEEEe
Q psy2961          81 PKLALNCVGGN-S-ATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        81 ~d~vid~~g~~-~-~~~~~~~l~~~G~~v~~g  110 (202)
                      +|+|+.....+ . +..+.+.|+++|.++...
T Consensus       182 ~D~V~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (277)
T 1o54_A          182 VDALFLDVPDPWNYIDKCWEALKGGGRFATVC  213 (277)
T ss_dssp             EEEEEECCSCGGGTHHHHHHHEEEEEEEEEEE
T ss_pred             cCEEEECCcCHHHHHHHHHHHcCCCCEEEEEe
Confidence            99998766544 2 334788999999999875

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=97.27  E-value=0.00039  Score=49.86  Aligned_cols=99  Identities=16%  Similarity=0.188  Sum_probs=61.5

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCC-------CcEEEEecCcccHHHHHHHHHhcC-----CceE-eChhHHHh-H
Q psy2961           7 SLSPGDVVIQNGANSACGQNVIQIARHWG-------LKTINIVRNRDDIDKLKSYLKSLG-----ADYV-FTEEELRN-I   72 (202)
Q Consensus         7 ~~~~g~~VlI~g~~~~vG~~~i~la~~~g-------~~vi~~~~~~~~~~~~~~~~~~lg-----~~~v-~~~~~~~~-~   72 (202)
                      .++++++||-.|+|+  |..+..+++..+       .+++++..+++......+.+...+     ...+ +...|... .
T Consensus        81 ~~~~~~~VLdiG~G~--G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~  158 (227)
T 1r18_A           81 HLKPGARILDVGSGS--GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGY  158 (227)
T ss_dssp             TCCTTCEEEEESCTT--SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCC
T ss_pred             hCCCCCEEEEECCCc--cHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCC
Confidence            478899999999874  888888888776       377777766653222222223322     1111 11112111 1


Q ss_pred             HHhhCCCCCeEEEecCCCchHH-HHHHhcccCcEEEEEe
Q psy2961          73 SRDASIPKPKLALNCVGGNSAT-NLLRTLVSKGVMVTYG  110 (202)
Q Consensus        73 ~~~~~~~~~d~vid~~g~~~~~-~~~~~l~~~G~~v~~g  110 (202)
                      ..   ...+|+|+.+..-.... .+.+.|+++|+++..-
T Consensus       159 ~~---~~~fD~I~~~~~~~~~~~~~~~~LkpgG~lvi~~  194 (227)
T 1r18_A          159 PP---NAPYNAIHVGAAAPDTPTELINQLASGGRLIVPV  194 (227)
T ss_dssp             GG---GCSEEEEEECSCBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             Cc---CCCccEEEECCchHHHHHHHHHHhcCCCEEEEEE
Confidence            11   25699998877655543 4789999999998865

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=97.27  E-value=0.0011  Score=46.36  Aligned_cols=101  Identities=17%  Similarity=0.214  Sum_probs=61.5

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCC--CcEEEEecCcccHHHHHHHHHhcCC-ceE-eChhHHHhHHHhhCCCCCe
Q psy2961           7 SLSPGDVVIQNGANSACGQNVIQIARHWG--LKTINIVRNRDDIDKLKSYLKSLGA-DYV-FTEEELRNISRDASIPKPK   82 (202)
Q Consensus         7 ~~~~g~~VlI~g~~~~vG~~~i~la~~~g--~~vi~~~~~~~~~~~~~~~~~~lg~-~~v-~~~~~~~~~~~~~~~~~~d   82 (202)
                      .++++++||-.|+|+  |..+..+++..+  .+++++..+++..+...+.++..|. ..+ +-..|..++... ....+|
T Consensus        19 ~~~~~~~vLDlGcG~--G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~fD   95 (197)
T 3eey_A           19 FVKEGDTVVDATCGN--GNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKY-IDCPVK   95 (197)
T ss_dssp             HCCTTCEEEESCCTT--SHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGT-CCSCEE
T ss_pred             cCCCCCEEEEcCCCC--CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhh-ccCCce
Confidence            468899999999874  788888888864  5777777666533323333444444 111 111222222111 225799


Q ss_pred             EEEecCCC----------------chHHHHHHhcccCcEEEEEe
Q psy2961          83 LALNCVGG----------------NSATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        83 ~vid~~g~----------------~~~~~~~~~l~~~G~~v~~g  110 (202)
                      +|+-..+-                ..+..+.+.|+++|+++.+.
T Consensus        96 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~  139 (197)
T 3eey_A           96 AVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVI  139 (197)
T ss_dssp             EEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEE
Confidence            99865432                12334778999999998875

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=97.27  E-value=0.0021  Score=49.95  Aligned_cols=36  Identities=8%  Similarity=0.001  Sum_probs=31.0

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHH-HCCCcEEEEecCcc
Q psy2961          11 GDVVIQNGANSACGQNVIQIAR-HWGLKTINIVRNRD   46 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~-~~g~~vi~~~~~~~   46 (202)
                      +.+|||+|++|.+|..+++.+. ..|++|+++.++..
T Consensus         2 ~m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~r~~~   38 (397)
T 1gy8_A            2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVG   38 (397)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHhCCCEEEEEecCCc
Confidence            3589999999999999998887 89999999887654

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.27  E-value=0.0029  Score=49.71  Aligned_cols=95  Identities=15%  Similarity=0.226  Sum_probs=67.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCCCeEEEecC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNCV   88 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~vid~~   88 (202)
                      .+++|+|+|.| -+|..+++.++..|..|+++..+++    +.+.+++.|...++ |..+...+.+ .+-..+|+||-++
T Consensus         3 ~~~~viIiG~G-r~G~~va~~L~~~g~~vvvId~d~~----~v~~~~~~g~~vi~GDat~~~~L~~-agi~~A~~viv~~   76 (413)
T 3l9w_A            3 HGMRVIIAGFG-RFGQITGRLLLSSGVKMVVLDHDPD----HIETLRKFGMKVFYGDATRMDLLES-AGAAKAEVLINAI   76 (413)
T ss_dssp             -CCSEEEECCS-HHHHHHHHHHHHTTCCEEEEECCHH----HHHHHHHTTCCCEESCTTCHHHHHH-TTTTTCSEEEECC
T ss_pred             CCCeEEEECCC-HHHHHHHHHHHHCCCCEEEEECCHH----HHHHHHhCCCeEEEcCCCCHHHHHh-cCCCccCEEEECC
Confidence            45679999998 8999999999999999999887765    57788888887665 3222221322 2335789999999


Q ss_pred             CCchHHH----HHHhcccCcEEEEEe
Q psy2961          89 GGNSATN----LLRTLVSKGVMVTYG  110 (202)
Q Consensus        89 g~~~~~~----~~~~l~~~G~~v~~g  110 (202)
                      +......    ..+.+.|..+++.-.
T Consensus        77 ~~~~~n~~i~~~ar~~~p~~~Iiara  102 (413)
T 3l9w_A           77 DDPQTNLQLTEMVKEHFPHLQIIARA  102 (413)
T ss_dssp             SSHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             CChHHHHHHHHHHHHhCCCCeEEEEE
Confidence            8765443    345566777777654

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=97.26  E-value=0.001  Score=49.42  Aligned_cols=64  Identities=16%  Similarity=0.254  Sum_probs=44.2

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhCCCCCeEEEe
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALN   86 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~~~~~d~vid   86 (202)
                      ..+-.+|||+|++|.+|..+++.+...|.+|+++.++.-              + +.+.+.+.. +...    ++|+||.
T Consensus         9 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~--------------D-l~d~~~~~~~~~~~----~~d~vih   69 (292)
T 1vl0_A            9 HHHHMKILITGANGQLGREIQKQLKGKNVEVIPTDVQDL--------------D-ITNVLAVNKFFNEK----KPNVVIN   69 (292)
T ss_dssp             ---CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTC--------------C-TTCHHHHHHHHHHH----CCSEEEE
T ss_pred             ccccceEEEECCCChHHHHHHHHHHhCCCeEEeccCccC--------------C-CCCHHHHHHHHHhc----CCCEEEE
Confidence            456679999999999999999999889999888875421              1 112333333 3321    6899999


Q ss_pred             cCCC
Q psy2961          87 CVGG   90 (202)
Q Consensus        87 ~~g~   90 (202)
                      +++.
T Consensus        70 ~A~~   73 (292)
T 1vl0_A           70 CAAH   73 (292)
T ss_dssp             CCCC
T ss_pred             CCcc
Confidence            8874

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=97.26  E-value=0.00018  Score=52.26  Aligned_cols=76  Identities=16%  Similarity=0.112  Sum_probs=46.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhCCCCCeEEEec
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARH-WGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNC   87 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~-~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~~~~~d~vid~   87 (202)
                      .+.++||+|+++++|.++++.+.. .|++|+.+.++++.   ..+.+..+.++ +-+.++... + +.....++|++|++
T Consensus         3 ~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~~~---~~~~~~~~~~D-v~~~~~v~~~~-~~~~~~~id~lv~n   77 (244)
T 4e4y_A            3 AMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSF---SAENLKFIKAD-LTKQQDITNVL-DIIKNVSFDGIFLN   77 (244)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSCCC---CCTTEEEEECC-TTCHHHHHHHH-HHTTTCCEEEEEEC
T ss_pred             CCCeEEEeCCCChHHHHHHHHHHhcCCcEEEEecccccc---ccccceEEecC-cCCHHHHHHHH-HHHHhCCCCEEEEC
Confidence            467899999999999998877666 77877777665541   01111000000 012344444 4 33334579999999


Q ss_pred             CCC
Q psy2961          88 VGG   90 (202)
Q Consensus        88 ~g~   90 (202)
                      +|.
T Consensus        78 Ag~   80 (244)
T 4e4y_A           78 AGI   80 (244)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            984

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=97.25  E-value=0.0031  Score=47.66  Aligned_cols=87  Identities=14%  Similarity=0.087  Sum_probs=63.3

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhCCCCCeEEEec
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNC   87 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~~~~~d~vid~   87 (202)
                      -.|.+|.|.|.| .+|...++.++..|++|++..++.+.     ..+.++|+.. .   ++.+ +      ...|+|+-+
T Consensus       140 l~g~~vgIIG~G-~IG~~~A~~l~~~G~~V~~~d~~~~~-----~~~~~~g~~~-~---~l~ell------~~aDvVvl~  203 (313)
T 2ekl_A          140 LAGKTIGIVGFG-RIGTKVGIIANAMGMKVLAYDILDIR-----EKAEKINAKA-V---SLEELL------KNSDVISLH  203 (313)
T ss_dssp             CTTCEEEEESCS-HHHHHHHHHHHHTTCEEEEECSSCCH-----HHHHHTTCEE-C---CHHHHH------HHCSEEEEC
T ss_pred             CCCCEEEEEeeC-HHHHHHHHHHHHCCCEEEEECCCcch-----hHHHhcCcee-c---CHHHHH------hhCCEEEEe
Confidence            468899999998 99999999999999999888776652     2356677653 2   2333 3      245888888


Q ss_pred             CCCch-----H-HHHHHhcccCcEEEEEec
Q psy2961          88 VGGNS-----A-TNLLRTLVSKGVMVTYGG  111 (202)
Q Consensus        88 ~g~~~-----~-~~~~~~l~~~G~~v~~g~  111 (202)
                      +....     . ...+..|++++.++.++.
T Consensus       204 ~P~~~~t~~li~~~~l~~mk~ga~lIn~ar  233 (313)
T 2ekl_A          204 VTVSKDAKPIIDYPQFELMKDNVIIVNTSR  233 (313)
T ss_dssp             CCCCTTSCCSBCHHHHHHSCTTEEEEESSC
T ss_pred             ccCChHHHHhhCHHHHhcCCCCCEEEECCC
Confidence            76432     1 246788999998888864

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=97.24  E-value=0.00039  Score=53.79  Aligned_cols=35  Identities=11%  Similarity=0.255  Sum_probs=31.4

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      .+|||+|++|.+|..+++.+...|++|+++.++.+
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~   63 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSS   63 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCc
Confidence            57999999999999999998889999999987754

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.24  E-value=0.00021  Score=51.57  Aligned_cols=70  Identities=19%  Similarity=0.254  Sum_probs=47.0

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceE-eC---hhHHHh-HHHhhCCCCCeEEE
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FT---EEELRN-ISRDASIPKPKLAL   85 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v-~~---~~~~~~-~~~~~~~~~~d~vi   85 (202)
                      +.+|||+|++|++|..+++.+...|++|+.+.++++        ..++  ..+ .|   ++++.. +.+.....++|++|
T Consensus         2 ~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~--------~~~~--~~~~~D~~~~~~~~~~~~~~~~~~~~d~li   71 (242)
T 1uay_A            2 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE--------GEDL--IYVEGDVTREEDVRRAVARAQEEAPLFAVV   71 (242)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC--------SSSS--EEEECCTTCHHHHHHHHHHHHHHSCEEEEE
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCcc--------ccce--EEEeCCCCCHHHHHHHHHHHHhhCCceEEE
Confidence            578999999999999999888888999998887653        1111  111 12   334443 33221114789999


Q ss_pred             ecCCC
Q psy2961          86 NCVGG   90 (202)
Q Consensus        86 d~~g~   90 (202)
                      .++|.
T Consensus        72 ~~ag~   76 (242)
T 1uay_A           72 SAAGV   76 (242)
T ss_dssp             ECCCC
T ss_pred             Ecccc
Confidence            98873

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=97.24  E-value=0.00089  Score=50.47  Aligned_cols=102  Identities=16%  Similarity=0.141  Sum_probs=63.7

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCc--eEeChhHHHhHHHhhCCCCCeEEE
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD--YVFTEEELRNISRDASIPKPKLAL   85 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~--~v~~~~~~~~~~~~~~~~~~d~vi   85 (202)
                      ++++++||-.|+|  .|..+..+++..|++++++.-+++..+...+.++..|..  .-+...|..++.  .....+|+|+
T Consensus       115 ~~~~~~vLDiGcG--~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V~  190 (312)
T 3vc1_A          115 AGPDDTLVDAGCG--RGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTP--FDKGAVTASW  190 (312)
T ss_dssp             CCTTCEEEEESCT--TSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC--CCTTCEEEEE
T ss_pred             CCCCCEEEEecCC--CCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCC--CCCCCEeEEE
Confidence            7899999999987  488888888887899888887776433333344445532  111111211110  1235799997


Q ss_pred             ecCCC-----c-hHHHHHHhcccCcEEEEEeccC
Q psy2961          86 NCVGG-----N-SATNLLRTLVSKGVMVTYGGMS  113 (202)
Q Consensus        86 d~~g~-----~-~~~~~~~~l~~~G~~v~~g~~~  113 (202)
                      ....-     . .+..+.++|+|||+++.+....
T Consensus       191 ~~~~l~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  224 (312)
T 3vc1_A          191 NNESTMYVDLHDLFSEHSRFLKVGGRYVTITGCW  224 (312)
T ss_dssp             EESCGGGSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             ECCchhhCCHHHHHHHHHHHcCCCcEEEEEEccc
Confidence            64321     1 2234678999999999876433

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=97.23  E-value=0.0024  Score=49.34  Aligned_cols=93  Identities=14%  Similarity=0.076  Sum_probs=60.1

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecCCCc
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGN   91 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~g~~   91 (202)
                      .+|+|+|+ |.+|..+++.+.. ...|.++..+.+    +.+.+++......+|-.|...+.+..  .+.|+||+|++..
T Consensus        17 mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~~----~~~~~~~~~~~~~~d~~d~~~l~~~~--~~~DvVi~~~p~~   88 (365)
T 3abi_A           17 MKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNNE----NLEKVKEFATPLKVDASNFDKLVEVM--KEFELVIGALPGF   88 (365)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTT-TSEEEEEESCHH----HHHHHTTTSEEEECCTTCHHHHHHHH--TTCSEEEECCCGG
T ss_pred             cEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCHH----HHHHHhccCCcEEEecCCHHHHHHHH--hCCCEEEEecCCc
Confidence            37999999 5999998877754 456665555443    45666554333334433433344443  4689999999876


Q ss_pred             hHHH-HHHhcccCcEEEEEecc
Q psy2961          92 SATN-LLRTLVSKGVMVTYGGM  112 (202)
Q Consensus        92 ~~~~-~~~~l~~~G~~v~~g~~  112 (202)
                      .-.. +-.|+..+-+++.+...
T Consensus        89 ~~~~v~~~~~~~g~~yvD~s~~  110 (365)
T 3abi_A           89 LGFKSIKAAIKSKVDMVDVSFM  110 (365)
T ss_dssp             GHHHHHHHHHHHTCEEEECCCC
T ss_pred             ccchHHHHHHhcCcceEeeecc
Confidence            4444 45688888899987643

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=97.22  E-value=0.0015  Score=45.06  Aligned_cols=100  Identities=20%  Similarity=0.301  Sum_probs=60.3

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCC-ceE-eChhHHHh-HHHhhCCCCC
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA-DYV-FTEEELRN-ISRDASIPKP   81 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~-~~v-~~~~~~~~-~~~~~~~~~~   81 (202)
                      ...+.++++||-.|+|+  |..+..+++.. .+++++..+++..+...+.++..+. +.+ +...+..+ +..   ...+
T Consensus        28 ~~~~~~~~~vldiG~G~--G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~  101 (192)
T 1l3i_A           28 LAEPGKNDVAVDVGCGT--GGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCK---IPDI  101 (192)
T ss_dssp             HHCCCTTCEEEEESCTT--SHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTT---SCCE
T ss_pred             hcCCCCCCEEEEECCCC--CHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhccc---CCCC
Confidence            34578899999999874  78888888766 7777777666532222233334444 211 11123222 221   1479


Q ss_pred             eEEEecCCCch----HHHHHHhcccCcEEEEEe
Q psy2961          82 KLALNCVGGNS----ATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        82 d~vid~~g~~~----~~~~~~~l~~~G~~v~~g  110 (202)
                      |+|+.......    +..+.+.|+++|.++...
T Consensus       102 D~v~~~~~~~~~~~~l~~~~~~l~~gG~l~~~~  134 (192)
T 1l3i_A          102 DIAVVGGSGGELQEILRIIKDKLKPGGRIIVTA  134 (192)
T ss_dssp             EEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CEEEECCchHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            99986554222    223677899999998764

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=97.22  E-value=0.002  Score=49.50  Aligned_cols=89  Identities=19%  Similarity=0.199  Sum_probs=60.2

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCV   88 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~   88 (202)
                      -.|.+|.|.|.| .+|..+++.++.+|++|++..+++..    .+.+.++|...+.   ++.+   ..  ...|+|+-++
T Consensus       162 l~gktvGIIG~G-~IG~~vA~~l~~~G~~V~~~dr~~~~----~~~~~~~g~~~~~---~l~e---ll--~~aDvV~l~~  228 (351)
T 3jtm_A          162 LEGKTIGTVGAG-RIGKLLLQRLKPFGCNLLYHDRLQMA----PELEKETGAKFVE---DLNE---ML--PKCDVIVINM  228 (351)
T ss_dssp             STTCEEEEECCS-HHHHHHHHHHGGGCCEEEEECSSCCC----HHHHHHHCCEECS---CHHH---HG--GGCSEEEECS
T ss_pred             ccCCEEeEEEeC-HHHHHHHHHHHHCCCEEEEeCCCccC----HHHHHhCCCeEcC---CHHH---HH--hcCCEEEECC
Confidence            468899999999 89999999999999998887766542    4555666765432   2222   11  2457777766


Q ss_pred             CCc-h----H-HHHHHhcccCcEEEEEe
Q psy2961          89 GGN-S----A-TNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        89 g~~-~----~-~~~~~~l~~~G~~v~~g  110 (202)
                      ... .    + ...+..|+++..+|.++
T Consensus       229 Plt~~t~~li~~~~l~~mk~gailIN~a  256 (351)
T 3jtm_A          229 PLTEKTRGMFNKELIGKLKKGVLIVNNA  256 (351)
T ss_dssp             CCCTTTTTCBSHHHHHHSCTTEEEEECS
T ss_pred             CCCHHHHHhhcHHHHhcCCCCCEEEECc
Confidence            521 1    1 23567778887777765

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=97.22  E-value=0.0012  Score=51.09  Aligned_cols=89  Identities=15%  Similarity=0.137  Sum_probs=58.4

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCc-EEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEec
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNC   87 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~   87 (202)
                      -.|.+|.|.|.| .+|..+++.++.+|++ |++..++...    .+.+.++|+..+.   ++.++   .  ...|+|+.+
T Consensus       162 l~g~tvgIIG~G-~IG~~vA~~l~~~G~~~V~~~d~~~~~----~~~~~~~g~~~~~---~l~el---l--~~aDvV~l~  228 (364)
T 2j6i_A          162 IEGKTIATIGAG-RIGYRVLERLVPFNPKELLYYDYQALP----KDAEEKVGARRVE---NIEEL---V--AQADIVTVN  228 (364)
T ss_dssp             STTCEEEEECCS-HHHHHHHHHHGGGCCSEEEEECSSCCC----HHHHHHTTEEECS---SHHHH---H--HTCSEEEEC
T ss_pred             CCCCEEEEECcC-HHHHHHHHHHHhCCCcEEEEECCCccc----hhHHHhcCcEecC---CHHHH---H--hcCCEEEEC
Confidence            368899999998 9999999999999997 8887766543    3445566654321   22221   1  245777776


Q ss_pred             CCCc----h-H-HHHHHhcccCcEEEEEe
Q psy2961          88 VGGN----S-A-TNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        88 ~g~~----~-~-~~~~~~l~~~G~~v~~g  110 (202)
                      +...    . + ...+..|++++.++.++
T Consensus       229 ~P~t~~t~~li~~~~l~~mk~ga~lIn~a  257 (364)
T 2j6i_A          229 APLHAGTKGLINKELLSKFKKGAWLVNTA  257 (364)
T ss_dssp             CCCSTTTTTCBCHHHHTTSCTTEEEEECS
T ss_pred             CCCChHHHHHhCHHHHhhCCCCCEEEECC
Confidence            6542    1 1 12556777777777765

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=97.22  E-value=0.00047  Score=48.07  Aligned_cols=94  Identities=15%  Similarity=0.059  Sum_probs=58.5

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCC----------CcEEEEecCcccHHHHHHHHHhcCCceE-e-C--hhHHHh-
Q psy2961           7 SLSPGDVVIQNGANSACGQNVIQIARHWG----------LKTINIVRNRDDIDKLKSYLKSLGADYV-F-T--EEELRN-   71 (202)
Q Consensus         7 ~~~~g~~VlI~g~~~~vG~~~i~la~~~g----------~~vi~~~~~~~~~~~~~~~~~~lg~~~v-~-~--~~~~~~-   71 (202)
                      .++++++||-.|+|+  |..+..+++..|          .+++++..++..   ..     -.+..+ . |  ..+... 
T Consensus        19 ~~~~~~~vLDlGcG~--G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~---~~-----~~~~~~~~~d~~~~~~~~~   88 (196)
T 2nyu_A           19 ILRPGLRVLDCGAAP--GAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF---PL-----EGATFLCPADVTDPRTSQR   88 (196)
T ss_dssp             CCCTTCEEEEETCCS--CHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC---CC-----TTCEEECSCCTTSHHHHHH
T ss_pred             CCCCCCEEEEeCCCC--CHHHHHHHHHhccccccccCCCceEEEEechhcc---cC-----CCCeEEEeccCCCHHHHHH
Confidence            368899999999984  889999999887          567776655431   00     112222 1 1  112233 


Q ss_pred             HHHhhCCCCCeEEEe-----cCCCc-------------hHHHHHHhcccCcEEEEEe
Q psy2961          72 ISRDASIPKPKLALN-----CVGGN-------------SATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        72 ~~~~~~~~~~d~vid-----~~g~~-------------~~~~~~~~l~~~G~~v~~g  110 (202)
                      +.+.+.+..+|+|+.     +++..             .+..+.+.|+|+|+++...
T Consensus        89 ~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~  145 (196)
T 2nyu_A           89 ILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKT  145 (196)
T ss_dssp             HHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence            444444457999994     33322             1223678999999998864

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=97.22  E-value=0.00074  Score=49.21  Aligned_cols=101  Identities=14%  Similarity=0.084  Sum_probs=63.7

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHC--CCcEEEEecCcccHHHHHHHHHhc-CCceEe-ChhHHHhHHHh-hCCC
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSL-GADYVF-TEEELRNISRD-ASIP   79 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~--g~~vi~~~~~~~~~~~~~~~~~~l-g~~~v~-~~~~~~~~~~~-~~~~   79 (202)
                      ...+.++++||-.|+|+  |..+..+++..  +.+++++..+++..+...+.++.. |.+.+. ...|.   .+. ....
T Consensus        91 ~~~~~~~~~vLdiG~G~--G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~---~~~~~~~~  165 (258)
T 2pwy_A           91 LLDLAPGMRVLEAGTGS--GGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKL---EEAELEEA  165 (258)
T ss_dssp             HTTCCTTCEEEEECCTT--SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCG---GGCCCCTT
T ss_pred             HcCCCCCCEEEEECCCc--CHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECch---hhcCCCCC
Confidence            35678999999999983  88888999885  467777776665322222333333 533221 11121   121 2235


Q ss_pred             CCeEEEecCCCc-h-HHHHHHhcccCcEEEEEe
Q psy2961          80 KPKLALNCVGGN-S-ATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        80 ~~d~vid~~g~~-~-~~~~~~~l~~~G~~v~~g  110 (202)
                      .+|+|+.....+ . +..+.+.|+++|+++.+.
T Consensus       166 ~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  198 (258)
T 2pwy_A          166 AYDGVALDLMEPWKVLEKAALALKPDRFLVAYL  198 (258)
T ss_dssp             CEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             CcCEEEECCcCHHHHHHHHHHhCCCCCEEEEEe
Confidence            699998766544 2 334788999999999875

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=97.21  E-value=0.0014  Score=47.31  Aligned_cols=100  Identities=11%  Similarity=0.045  Sum_probs=60.9

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHCCC--cEEEEecCcccHHHHHHHHHhcC-CceEeC-hhHHHhHHHhhCCCCC
Q psy2961           6 NSLSPGDVVIQNGANSACGQNVIQIARHWGL--KTINIVRNRDDIDKLKSYLKSLG-ADYVFT-EEELRNISRDASIPKP   81 (202)
Q Consensus         6 ~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~--~vi~~~~~~~~~~~~~~~~~~lg-~~~v~~-~~~~~~~~~~~~~~~~   81 (202)
                      ..++||++||=.|+|  .|..+..+|+..|.  +|+++--+++......+.+++.+ ...+.. ..+.....  .....+
T Consensus        73 l~ikpG~~VldlG~G--~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~--~~~~~v  148 (233)
T 4df3_A           73 LPVKEGDRILYLGIA--SGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYR--HLVEGV  148 (233)
T ss_dssp             CCCCTTCEEEEETCT--TSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGT--TTCCCE
T ss_pred             cCCCCCCEEEEecCc--CCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccc--cccceE
Confidence            468999999999997  48899999998875  58888777653222222222222 223332 11111111  112468


Q ss_pred             eEEEecCCCch-----HHHHHHhcccCcEEEEE
Q psy2961          82 KLALNCVGGNS-----ATNLLRTLVSKGVMVTY  109 (202)
Q Consensus        82 d~vid~~g~~~-----~~~~~~~l~~~G~~v~~  109 (202)
                      |+||.....+.     +.++.+.|+|+|+++.+
T Consensus       149 DvVf~d~~~~~~~~~~l~~~~r~LKpGG~lvI~  181 (233)
T 4df3_A          149 DGLYADVAQPEQAAIVVRNARFFLRDGGYMLMA  181 (233)
T ss_dssp             EEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEeccCChhHHHHHHHHHHhccCCCEEEEE
Confidence            98886555442     23356789999999875

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=97.21  E-value=0.00077  Score=52.21  Aligned_cols=75  Identities=9%  Similarity=0.077  Sum_probs=49.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCCCeEEEecC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNCV   88 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~vid~~   88 (202)
                      .+.+|||+|++|.+|..+++.+...|++|+++.++.+.    .......+...+. |-.+...+.+..  .++|+||.++
T Consensus        28 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~----~~~~~~~~v~~~~~Dl~d~~~~~~~~--~~~d~Vih~A  101 (379)
T 2c5a_A           28 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNE----HMTEDMFCDEFHLVDLRVMENCLKVT--EGVDHVFNLA  101 (379)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCS----SSCGGGTCSEEEECCTTSHHHHHHHH--TTCSEEEECC
T ss_pred             cCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCcc----chhhccCCceEEECCCCCHHHHHHHh--CCCCEEEECc
Confidence            35689999999999999999888889999999887653    1111112333332 322322233333  4789999998


Q ss_pred             CC
Q psy2961          89 GG   90 (202)
Q Consensus        89 g~   90 (202)
                      +.
T Consensus       102 ~~  103 (379)
T 2c5a_A          102 AD  103 (379)
T ss_dssp             CC
T ss_pred             ee
Confidence            73

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=97.20  E-value=0.00036  Score=51.40  Aligned_cols=71  Identities=8%  Similarity=-0.077  Sum_probs=48.3

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCCCeEEEecCC
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNCVG   89 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~vid~~g   89 (202)
                      +.+|||+|++|++|..+++.+...|++|+.+.+++..    ..   ..+...+. |-.+...+.+..  .++|+||.++|
T Consensus         3 ~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~----~~---~~~~~~~~~Dl~d~~~~~~~~--~~~D~vi~~Ag   73 (267)
T 3rft_A            3 MKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLD----PA---GPNEECVQCDLADANAVNAMV--AGCDGIVHLGG   73 (267)
T ss_dssp             EEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCC----CC---CTTEEEEECCTTCHHHHHHHH--TTCSEEEECCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCcc----cc---CCCCEEEEcCCCCHHHHHHHH--cCCCEEEECCC
Confidence            4689999999999999999998899999998887753    11   11222222 322222234433  37899999987


Q ss_pred             C
Q psy2961          90 G   90 (202)
Q Consensus        90 ~   90 (202)
                      .
T Consensus        74 ~   74 (267)
T 3rft_A           74 I   74 (267)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.20  E-value=0.001  Score=49.58  Aligned_cols=95  Identities=13%  Similarity=0.049  Sum_probs=54.3

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCc-EEEEecCcccHHHHHHHHHhcC--Cce-EeChhHHHh-HHHhhCCCCCeE
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLG--ADY-VFTEEELRN-ISRDASIPKPKL   83 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg--~~~-v~~~~~~~~-~~~~~~~~~~d~   83 (202)
                      -.+.+++|+|+| ++|.+++..+...|++ ++++.++.++..+..+.+...+  ... ..+.+++.+ +      .++|+
T Consensus       125 l~~k~vlVlGaG-G~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l------~~~Di  197 (283)
T 3jyo_A          125 AKLDSVVQVGAG-GVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVI------AAADG  197 (283)
T ss_dssp             CCCSEEEEECCS-HHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHH------HHSSE
T ss_pred             cCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHH------hcCCE
Confidence            357899999997 8999999988889995 6565555543211112222211  111 223234433 3      24699


Q ss_pred             EEecCCCchH-----HHHHHhcccCcEEEEEe
Q psy2961          84 ALNCVGGNSA-----TNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        84 vid~~g~~~~-----~~~~~~l~~~G~~v~~g  110 (202)
                      ||+|++....     .-....++++..++.+.
T Consensus       198 VInaTp~Gm~~~~~~pi~~~~l~~~~~v~Dlv  229 (283)
T 3jyo_A          198 VVNATPMGMPAHPGTAFDVSCLTKDHWVGDVV  229 (283)
T ss_dssp             EEECSSTTSTTSCSCSSCGGGCCTTCEEEECC
T ss_pred             EEECCCCCCCCCCCCCCCHHHhCCCCEEEEec
Confidence            9999863211     01234566666666554

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=97.20  E-value=0.001  Score=47.48  Aligned_cols=100  Identities=18%  Similarity=0.091  Sum_probs=60.9

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCC--CcEEEEecCcccHHHHHHHHHhcCC-----ceEe-ChhHHHhHHHhhCC
Q psy2961           7 SLSPGDVVIQNGANSACGQNVIQIARHWG--LKTINIVRNRDDIDKLKSYLKSLGA-----DYVF-TEEELRNISRDASI   78 (202)
Q Consensus         7 ~~~~g~~VlI~g~~~~vG~~~i~la~~~g--~~vi~~~~~~~~~~~~~~~~~~lg~-----~~v~-~~~~~~~~~~~~~~   78 (202)
                      .++++++||-.|+|+  |..+..+++..|  .+++++..+++..+...+.++..+.     +.+. ...|....  ....
T Consensus        74 ~~~~~~~vLDiG~G~--G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~--~~~~  149 (226)
T 1i1n_A           74 QLHEGAKALDVGSGS--GILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG--YAEE  149 (226)
T ss_dssp             TSCTTCEEEEETCTT--SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC--CGGG
T ss_pred             hCCCCCEEEEEcCCc--CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccC--cccC
Confidence            377899999999974  888888888876  5777777666532222233333331     1111 11121110  0112


Q ss_pred             CCCeEEEecCCCchH-HHHHHhcccCcEEEEEe
Q psy2961          79 PKPKLALNCVGGNSA-TNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        79 ~~~d~vid~~g~~~~-~~~~~~l~~~G~~v~~g  110 (202)
                      ..+|+|+........ ..+.+.|+|+|+++...
T Consensus       150 ~~fD~i~~~~~~~~~~~~~~~~LkpgG~lv~~~  182 (226)
T 1i1n_A          150 APYDAIHVGAAAPVVPQALIDQLKPGGRLILPV  182 (226)
T ss_dssp             CCEEEEEECSBBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             CCcCEEEECCchHHHHHHHHHhcCCCcEEEEEE
Confidence            569999876655444 45789999999998865

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=97.19  E-value=0.00094  Score=49.43  Aligned_cols=79  Identities=13%  Similarity=0.066  Sum_probs=58.5

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEec
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNC   87 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~   87 (202)
                      --.|.+|+|.|.++.+|..+++++...|++|+.+.+...                     +   +.+.+  ..+|++|.+
T Consensus       157 ~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t~---------------------~---L~~~~--~~ADIVI~A  210 (285)
T 3p2o_A          157 DLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTK---------------------D---LSLYT--RQADLIIVA  210 (285)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCS---------------------C---HHHHH--TTCSEEEEC
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCch---------------------h---HHHHh--hcCCEEEEC
Confidence            347899999999977999999999999998766543321                     1   11112  567999999


Q ss_pred             CCCchHHHHHHhcccCcEEEEEeccC
Q psy2961          88 VGGNSATNLLRTLVSKGVMVTYGGMS  113 (202)
Q Consensus        88 ~g~~~~~~~~~~l~~~G~~v~~g~~~  113 (202)
                      +|.+.+. --++++++..++.+|...
T Consensus       211 vg~p~~I-~~~~vk~GavVIDVgi~~  235 (285)
T 3p2o_A          211 AGCVNLL-RSDMVKEGVIVVDVGINR  235 (285)
T ss_dssp             SSCTTCB-CGGGSCTTEEEEECCCEE
T ss_pred             CCCCCcC-CHHHcCCCeEEEEeccCc
Confidence            9987553 235789999999998543

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=97.17  E-value=0.00094  Score=47.87  Aligned_cols=95  Identities=14%  Similarity=0.065  Sum_probs=60.8

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHh----cCCceEeChhHHHh-HHHhhCCC
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS----LGADYVFTEEELRN-ISRDASIP   79 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~----lg~~~v~~~~~~~~-~~~~~~~~   79 (202)
                      ...+.++++||-.|+|.  |..+..+++.. .+++++..+++    ..+.+++    .+.-.++ ..|..+ ..   ...
T Consensus        65 ~~~~~~~~~vLdiG~G~--G~~~~~l~~~~-~~v~~vD~~~~----~~~~a~~~~~~~~~v~~~-~~d~~~~~~---~~~  133 (231)
T 1vbf_A           65 ELDLHKGQKVLEIGTGI--GYYTALIAEIV-DKVVSVEINEK----MYNYASKLLSYYNNIKLI-LGDGTLGYE---EEK  133 (231)
T ss_dssp             HTTCCTTCEEEEECCTT--SHHHHHHHHHS-SEEEEEESCHH----HHHHHHHHHTTCSSEEEE-ESCGGGCCG---GGC
T ss_pred             hcCCCCCCEEEEEcCCC--CHHHHHHHHHc-CEEEEEeCCHH----HHHHHHHHHhhcCCeEEE-ECCcccccc---cCC
Confidence            34678899999999984  77888888764 77888776665    3444433    2311111 122211 11   125


Q ss_pred             CCeEEEecCCCchH-HHHHHhcccCcEEEEEe
Q psy2961          80 KPKLALNCVGGNSA-TNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        80 ~~d~vid~~g~~~~-~~~~~~l~~~G~~v~~g  110 (202)
                      .+|+|+....-... ..+.+.|+++|+++...
T Consensus       134 ~fD~v~~~~~~~~~~~~~~~~L~pgG~l~~~~  165 (231)
T 1vbf_A          134 PYDRVVVWATAPTLLCKPYEQLKEGGIMILPI  165 (231)
T ss_dssp             CEEEEEESSBBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             CccEEEECCcHHHHHHHHHHHcCCCcEEEEEE
Confidence            79999876654444 34789999999998875

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=97.16  E-value=0.0016  Score=46.56  Aligned_cols=103  Identities=9%  Similarity=0.057  Sum_probs=61.7

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHC--CCcEEEEecCcccHHHHHHHHHhcCCc-eE-eChhHHHh-HHHhhC-C-
Q psy2961           6 NSLSPGDVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGAD-YV-FTEEELRN-ISRDAS-I-   78 (202)
Q Consensus         6 ~~~~~g~~VlI~g~~~~vG~~~i~la~~~--g~~vi~~~~~~~~~~~~~~~~~~lg~~-~v-~~~~~~~~-~~~~~~-~-   78 (202)
                      .+..++.+||-.|+|  .|..++.+++..  +.+++++-.+++......+.++..|.. .+ +...+..+ +..... + 
T Consensus        65 ~~~~~~~~vLdiG~G--~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~  142 (229)
T 2avd_A           65 ARLIQAKKALDLGTF--TGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGE  142 (229)
T ss_dssp             HHHTTCCEEEEECCT--TSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTC
T ss_pred             HHhcCCCEEEEEcCC--ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCC
Confidence            345678899999987  688889999876  467777776665333333344444542 11 11122222 322221 1 


Q ss_pred             -CCCeEEEecCCCc----hHHHHHHhcccCcEEEEEe
Q psy2961          79 -PKPKLALNCVGGN----SATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        79 -~~~d~vid~~g~~----~~~~~~~~l~~~G~~v~~g  110 (202)
                       ..+|+|+-.....    .+..+.++|+++|.++...
T Consensus       143 ~~~~D~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~  179 (229)
T 2avd_A          143 AGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLR  179 (229)
T ss_dssp             TTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEEC
Confidence             4799987544332    2334778999999998754

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.16  E-value=0.0022  Score=46.82  Aligned_cols=35  Identities=14%  Similarity=0.155  Sum_probs=29.1

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      +.+|+|.|+| ++|..+++.+...|...+.+++.+.
T Consensus        31 ~~~VlVvG~G-g~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGLG-GLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECCS-HHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEEeeC-HHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            5789999998 9999999999999987666666553

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=97.16  E-value=0.0019  Score=47.71  Aligned_cols=93  Identities=10%  Similarity=0.029  Sum_probs=55.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVG   89 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~g   89 (202)
                      ++.+|+|+|+| ++|.++++.+...|++|+++.++.++   ..+.+++++...-++..++.++.   . .++|++|+|++
T Consensus       118 ~~k~vlViGaG-g~g~a~a~~L~~~G~~V~v~~R~~~~---~~~la~~~~~~~~~~~~~~~~~~---~-~~~DivVn~t~  189 (271)
T 1nyt_A          118 PGLRILLIGAG-GASRGVLLPLLSLDCAVTITNRTVSR---AEELAKLFAHTGSIQALSMDELE---G-HEFDLIINATS  189 (271)
T ss_dssp             TTCEEEEECCS-HHHHHHHHHHHHTTCEEEEECSSHHH---HHHHHHHTGGGSSEEECCSGGGT---T-CCCSEEEECCS
T ss_pred             CCCEEEEECCc-HHHHHHHHHHHHcCCEEEEEECCHHH---HHHHHHHhhccCCeeEecHHHhc---c-CCCCEEEECCC
Confidence            57899999996 89999999999999877776666542   12333444331001101111121   1 47999999998


Q ss_pred             CchHHH----HHHhcccCcEEEEEe
Q psy2961          90 GNSATN----LLRTLVSKGVMVTYG  110 (202)
Q Consensus        90 ~~~~~~----~~~~l~~~G~~v~~g  110 (202)
                      ......    ....++++..++.+.
T Consensus       190 ~~~~~~~~~i~~~~l~~~~~v~D~~  214 (271)
T 1nyt_A          190 SGISGDIPAIPSSLIHPGIYCYDMF  214 (271)
T ss_dssp             CGGGTCCCCCCGGGCCTTCEEEESC
T ss_pred             CCCCCCCCCCCHHHcCCCCEEEEec
Confidence            654311    123455666666654

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=97.15  E-value=0.00073  Score=51.83  Aligned_cols=50  Identities=20%  Similarity=0.274  Sum_probs=38.3

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceE
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV   63 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v   63 (202)
                      -.|++|.|.|.| .+|+.+++.++.+|++|+ +++.+..   +.+..++++++.+
T Consensus       173 L~GktV~I~G~G-nVG~~~A~~l~~~GakVv-vsD~~~~---~~~~a~~~ga~~v  222 (355)
T 1c1d_A          173 LDGLTVLVQGLG-AVGGSLASLAAEAGAQLL-VADTDTE---RVAHAVALGHTAV  222 (355)
T ss_dssp             STTCEEEEECCS-HHHHHHHHHHHHTTCEEE-EECSCHH---HHHHHHHTTCEEC
T ss_pred             CCCCEEEEECcC-HHHHHHHHHHHHCCCEEE-EEeCCcc---HHHHHHhcCCEEe
Confidence            478999999988 999999999999999988 5555432   3445566776543

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=97.15  E-value=0.0022  Score=48.48  Aligned_cols=94  Identities=7%  Similarity=0.035  Sum_probs=61.6

Q ss_pred             CEEEEeCCCcHHHHHHHHHH-H-HCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecCC
Q psy2961          12 DVVIQNGANSACGQNVIQIA-R-HWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVG   89 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la-~-~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~g   89 (202)
                      -+|.|.|+| .+|...++.+ + ..+.+++.+++...+. ...+.++++|.....  .+..++.+.++..++|+||+|++
T Consensus         5 irVaIIG~G-~iG~~~~~~l~~~~~~~elvav~d~~~~~-~~~~~a~~~g~~~~~--~~~e~ll~~~~~~~iDvV~~atp   80 (312)
T 1nvm_B            5 LKVAIIGSG-NIGTDLMIKVLRNAKYLEMGAMVGIDAAS-DGLARAQRMGVTTTY--AGVEGLIKLPEFADIDFVFDATS   80 (312)
T ss_dssp             EEEEEECCS-HHHHHHHHHHHHHCSSEEEEEEECSCTTC-HHHHHHHHTTCCEES--SHHHHHHHSGGGGGEEEEEECSC
T ss_pred             CEEEEEcCc-HHHHHHHHHHHhhCcCeEEEEEEeCChhh-hHHHHHHHcCCCccc--CCHHHHHhccCCCCCcEEEECCC
Confidence            479999976 9999888777 4 4577888888766431 024556678775432  23333333333357999999999


Q ss_pred             CchHHH-HHHhccc--CcEEEEE
Q psy2961          90 GNSATN-LLRTLVS--KGVMVTY  109 (202)
Q Consensus        90 ~~~~~~-~~~~l~~--~G~~v~~  109 (202)
                      ...... ...++..  |.++++.
T Consensus        81 ~~~h~~~a~~al~a~~Gk~Vi~e  103 (312)
T 1nvm_B           81 ASAHVQNEALLRQAKPGIRLIDL  103 (312)
T ss_dssp             HHHHHHHHHHHHHHCTTCEEEEC
T ss_pred             hHHHHHHHHHHHHhCCCCEEEEc
Confidence            654444 5677777  7777763

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=97.14  E-value=0.0006  Score=51.98  Aligned_cols=79  Identities=13%  Similarity=0.043  Sum_probs=46.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC--CcEEEEecCcccHHHHHHHHHhc----CCceEe-ChhHHHhHHHhhCCCCCe
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWG--LKTINIVRNRDDIDKLKSYLKSL----GADYVF-TEEELRNISRDASIPKPK   82 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g--~~vi~~~~~~~~~~~~~~~~~~l----g~~~v~-~~~~~~~~~~~~~~~~~d   82 (202)
                      .+.+|||+||+|.+|..+++.+...|  .+|++..+....  ...+.++.+    +...+. |-.+...+.+...+.++|
T Consensus        23 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d  100 (346)
T 4egb_A           23 NAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYS--GNLNNVKSIQDHPNYYFVKGEIQNGELLEHVIKERDVQ  100 (346)
T ss_dssp             -CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTT--CCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHTCC
T ss_pred             CCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccc--cchhhhhhhccCCCeEEEEcCCCCHHHHHHHHhhcCCC
Confidence            45789999999999999999888888  566666654311  012222222    222222 222222222222223689


Q ss_pred             EEEecCCC
Q psy2961          83 LALNCVGG   90 (202)
Q Consensus        83 ~vid~~g~   90 (202)
                      +||.+++.
T Consensus       101 ~Vih~A~~  108 (346)
T 4egb_A          101 VIVNFAAE  108 (346)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCcc
Confidence            99999874

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=97.14  E-value=0.0012  Score=48.89  Aligned_cols=77  Identities=16%  Similarity=0.190  Sum_probs=56.9

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCV   88 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~   88 (202)
                      -.|.+|+|.|.|+.+|..+++++...|++|+.+.+...                     +   +.+.+  ..+|+||.++
T Consensus       159 l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~---------------------~---L~~~~--~~ADIVI~Av  212 (285)
T 3l07_A          159 TEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTT---------------------D---LKSHT--TKADILIVAV  212 (285)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCS---------------------S---HHHHH--TTCSEEEECC
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCch---------------------h---HHHhc--ccCCEEEECC
Confidence            47899999999977999999999999998755533221                     1   11112  5679999999


Q ss_pred             CCchHHHHHHhcccCcEEEEEecc
Q psy2961          89 GGNSATNLLRTLVSKGVMVTYGGM  112 (202)
Q Consensus        89 g~~~~~~~~~~l~~~G~~v~~g~~  112 (202)
                      |.+.+. --++++++..++.+|..
T Consensus       213 g~p~~I-~~~~vk~GavVIDvgi~  235 (285)
T 3l07_A          213 GKPNFI-TADMVKEGAVVIDVGIN  235 (285)
T ss_dssp             CCTTCB-CGGGSCTTCEEEECCCE
T ss_pred             CCCCCC-CHHHcCCCcEEEEeccc
Confidence            987652 23567999999998844

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=97.14  E-value=0.0043  Score=45.33  Aligned_cols=97  Identities=22%  Similarity=0.233  Sum_probs=60.2

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCc-eEeChhHHHhHHHhhCCCCCeEEEe
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD-YVFTEEELRNISRDASIPKPKLALN   86 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~-~v~~~~~~~~~~~~~~~~~~d~vid   86 (202)
                      ++++++||-.|+|+  |..++.+++ .|++++++.-++.......+.++..+.. .+. ..+..+   ......+|+|+.
T Consensus       118 ~~~~~~VLDiGcG~--G~l~~~la~-~g~~v~gvDi~~~~v~~a~~n~~~~~~~v~~~-~~d~~~---~~~~~~fD~Vv~  190 (254)
T 2nxc_A          118 LRPGDKVLDLGTGS--GVLAIAAEK-LGGKALGVDIDPMVLPQAEANAKRNGVRPRFL-EGSLEA---ALPFGPFDLLVA  190 (254)
T ss_dssp             CCTTCEEEEETCTT--SHHHHHHHH-TTCEEEEEESCGGGHHHHHHHHHHTTCCCEEE-ESCHHH---HGGGCCEEEEEE
T ss_pred             cCCCCEEEEecCCC--cHHHHHHHH-hCCeEEEEECCHHHHHHHHHHHHHcCCcEEEE-ECChhh---cCcCCCCCEEEE
Confidence            57899999999985  677777666 5778888877776433333334444543 111 122222   122257999996


Q ss_pred             cCCCch----HHHHHHhcccCcEEEEEec
Q psy2961          87 CVGGNS----ATNLLRTLVSKGVMVTYGG  111 (202)
Q Consensus        87 ~~g~~~----~~~~~~~l~~~G~~v~~g~  111 (202)
                      ......    +..+.+.|+|+|+++..+.
T Consensus       191 n~~~~~~~~~l~~~~~~LkpgG~lils~~  219 (254)
T 2nxc_A          191 NLYAELHAALAPRYREALVPGGRALLTGI  219 (254)
T ss_dssp             ECCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCcHHHHHHHHHHHHHHcCCCCEEEEEee
Confidence            543322    2236778999999998763

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=97.12  E-value=0.0016  Score=45.67  Aligned_cols=69  Identities=20%  Similarity=0.235  Sum_probs=44.7

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHH-HhcCCceEe--C---hhHHHh-HHHhhCCCCCeEE
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGADYVF--T---EEELRN-ISRDASIPKPKLA   84 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~v~--~---~~~~~~-~~~~~~~~~~d~v   84 (202)
                      .++||+|++|++|..+++.+...  +|+.+.++++.    .+.+ ++++. .++  |   ++++.. +.+ .  +++|++
T Consensus         1 k~vlVtGasg~iG~~la~~l~~~--~V~~~~r~~~~----~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~-~--~~id~v   70 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARALKGH--DLLLSGRRAGA----LAELAREVGA-RALPADLADELEAKALLEE-A--GPLDLL   70 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHTTTS--EEEEECSCHHH----HHHHHHHHTC-EECCCCTTSHHHHHHHHHH-H--CSEEEE
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhC--CEEEEECCHHH----HHHHHHhccC-cEEEeeCCCHHHHHHHHHh-c--CCCCEE
Confidence            36899999999999988776665  88887776543    2222 33333 222  2   334444 433 2  479999


Q ss_pred             EecCCC
Q psy2961          85 LNCVGG   90 (202)
Q Consensus        85 id~~g~   90 (202)
                      |.++|.
T Consensus        71 i~~ag~   76 (207)
T 2yut_A           71 VHAVGK   76 (207)
T ss_dssp             EECCCC
T ss_pred             EECCCc
Confidence            999874

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=97.11  E-value=0.0026  Score=49.55  Aligned_cols=89  Identities=15%  Similarity=0.031  Sum_probs=56.0

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCV   88 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~   88 (202)
                      -.|.+|.|.|.| .+|..+++.++.+|.+|++..++...    .+...++|...+.+   +.+   ..  ...|+|+-++
T Consensus       189 l~gktvGIIGlG-~IG~~vA~~l~a~G~~V~~~d~~~~~----~~~~~~~G~~~~~~---l~e---ll--~~aDvV~l~~  255 (393)
T 2nac_A          189 LEAMHVGTVAAG-RIGLAVLRRLAPFDVHLHYTDRHRLP----ESVEKELNLTWHAT---RED---MY--PVCDVVTLNC  255 (393)
T ss_dssp             CTTCEEEEECCS-HHHHHHHHHHGGGTCEEEEECSSCCC----HHHHHHHTCEECSS---HHH---HG--GGCSEEEECS
T ss_pred             CCCCEEEEEeEC-HHHHHHHHHHHhCCCEEEEEcCCccc----hhhHhhcCceecCC---HHH---HH--hcCCEEEEec
Confidence            368899999999 99999999999999999887766543    34455566543211   222   11  2346666655


Q ss_pred             CCc-h----H-HHHHHhcccCcEEEEEe
Q psy2961          89 GGN-S----A-TNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        89 g~~-~----~-~~~~~~l~~~G~~v~~g  110 (202)
                      ... .    + ...+..|+++..++.++
T Consensus       256 Plt~~t~~li~~~~l~~mk~gailIN~a  283 (393)
T 2nac_A          256 PLHPETEHMINDETLKLFKRGAYIVNTA  283 (393)
T ss_dssp             CCCTTTTTCBSHHHHTTSCTTEEEEECS
T ss_pred             CCchHHHHHhhHHHHhhCCCCCEEEECC
Confidence            421 1    1 12455666666666655

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=97.11  E-value=0.00066  Score=51.54  Aligned_cols=78  Identities=12%  Similarity=0.064  Sum_probs=46.0

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhc-C--CceEe-ChhHHHhHHHhhCCCCCeEEEecC
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL-G--ADYVF-TEEELRNISRDASIPKPKLALNCV   88 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~l-g--~~~v~-~~~~~~~~~~~~~~~~~d~vid~~   88 (202)
                      +|||+|++|.+|..+++.+...|++|+++.+......+..+.++++ +  ...+. |-.+...+.+...+.++|+||.++
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~D~vih~A   81 (338)
T 1udb_A            2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHFA   81 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCCcchhHHHHHHhhcCCcceEEEccCCCHHHHHHHhhccCCCEEEECC
Confidence            6999999999999999988889999988764321101122333332 2  22222 322211122222113689999998


Q ss_pred             CC
Q psy2961          89 GG   90 (202)
Q Consensus        89 g~   90 (202)
                      |.
T Consensus        82 ~~   83 (338)
T 1udb_A           82 GL   83 (338)
T ss_dssp             SC
T ss_pred             cc
Confidence            74

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=97.11  E-value=0.0019  Score=54.16  Aligned_cols=81  Identities=9%  Similarity=0.032  Sum_probs=50.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHH---hcCCceEe-ChhHHHhHHHhhCCCCCeEEE
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK---SLGADYVF-TEEELRNISRDASIPKPKLAL   85 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~---~lg~~~v~-~~~~~~~~~~~~~~~~~d~vi   85 (202)
                      .+.+|||+||+|.+|..+++.+...|++|+++.++.....+..+.++   ..+...+. |-.+...+.+.....++|+||
T Consensus        10 ~~~~ilVTGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~D~Vi   89 (699)
T 1z45_A           10 TSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVI   89 (699)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCcchHHHHHHHhhccCCceEEEEcCCCCHHHHHHHHHhCCCCEEE
Confidence            46899999999999999999888899999998876542111122222   22333332 322221122222112789999


Q ss_pred             ecCCC
Q psy2961          86 NCVGG   90 (202)
Q Consensus        86 d~~g~   90 (202)
                      .+++.
T Consensus        90 h~A~~   94 (699)
T 1z45_A           90 HFAGL   94 (699)
T ss_dssp             ECCSC
T ss_pred             ECCcc
Confidence            99874

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=97.10  E-value=0.0029  Score=48.00  Aligned_cols=88  Identities=11%  Similarity=0.107  Sum_probs=58.7

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEec-CcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhCCCCCeEEEe
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVR-NRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALN   86 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~-~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~~~~~d~vid   86 (202)
                      -.|.+|.|.|.| .+|...++.++..|++|++..+ +.+.     ..+.++|... .  .++.+ +      ...|+|+-
T Consensus       144 l~g~~vgIIG~G-~IG~~~A~~l~~~G~~V~~~d~~~~~~-----~~~~~~g~~~-~--~~l~ell------~~aDvVil  208 (320)
T 1gdh_A          144 LDNKTLGIYGFG-SIGQALAKRAQGFDMDIDYFDTHRASS-----SDEASYQATF-H--DSLDSLL------SVSQFFSL  208 (320)
T ss_dssp             CTTCEEEEECCS-HHHHHHHHHHHTTTCEEEEECSSCCCH-----HHHHHHTCEE-C--SSHHHHH------HHCSEEEE
T ss_pred             CCCCEEEEECcC-HHHHHHHHHHHHCCCEEEEECCCCcCh-----hhhhhcCcEE-c--CCHHHHH------hhCCEEEE
Confidence            468899999998 9999999999999999888776 5542     3445566643 2  12222 2      23477777


Q ss_pred             cCCCch-----H-HHHHHhcccCcEEEEEec
Q psy2961          87 CVGGNS-----A-TNLLRTLVSKGVMVTYGG  111 (202)
Q Consensus        87 ~~g~~~-----~-~~~~~~l~~~G~~v~~g~  111 (202)
                      ++....     + ...+..|++++.++.++.
T Consensus       209 ~~p~~~~t~~~i~~~~l~~mk~gailIn~ar  239 (320)
T 1gdh_A          209 NAPSTPETRYFFNKATIKSLPQGAIVVNTAR  239 (320)
T ss_dssp             CCCCCTTTTTCBSHHHHTTSCTTEEEEECSC
T ss_pred             eccCchHHHhhcCHHHHhhCCCCcEEEECCC
Confidence            665321     1 125567777777777663

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.09  E-value=0.011  Score=39.52  Aligned_cols=94  Identities=16%  Similarity=0.107  Sum_probs=58.8

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHH---hcCCceEe-ChhHHHhHHHhhCCCCCeEEEe
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK---SLGADYVF-TEEELRNISRDASIPKPKLALN   86 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~---~lg~~~v~-~~~~~~~~~~~~~~~~~d~vid   86 (202)
                      .++|+|.|+| .+|...++.+...|.+|+++.+++++   +.+.+.   ..|...+. |..+...+.+. +-.++|+|+-
T Consensus         3 ~~~vlI~G~G-~vG~~la~~L~~~g~~V~vid~~~~~---~~~~~~~~~~~~~~~i~gd~~~~~~l~~a-~i~~ad~vi~   77 (153)
T 1id1_A            3 KDHFIVCGHS-ILAINTILQLNQRGQNVTVISNLPED---DIKQLEQRLGDNADVIPGDSNDSSVLKKA-GIDRCRAILA   77 (153)
T ss_dssp             CSCEEEECCS-HHHHHHHHHHHHTTCCEEEEECCCHH---HHHHHHHHHCTTCEEEESCTTSHHHHHHH-TTTTCSEEEE
T ss_pred             CCcEEEECCC-HHHHHHHHHHHHCCCCEEEEECCChH---HHHHHHHhhcCCCeEEEcCCCCHHHHHHc-ChhhCCEEEE
Confidence            4679999986 99999999999999999988876421   233333   23444444 22222223332 1257899999


Q ss_pred             cCCCchHHH----HHHhcccCcEEEEE
Q psy2961          87 CVGGNSATN----LLRTLVSKGVMVTY  109 (202)
Q Consensus        87 ~~g~~~~~~----~~~~l~~~G~~v~~  109 (202)
                      +++......    ..+.+.+..+++..
T Consensus        78 ~~~~d~~n~~~~~~a~~~~~~~~ii~~  104 (153)
T 1id1_A           78 LSDNDADNAFVVLSAKDMSSDVKTVLA  104 (153)
T ss_dssp             CSSCHHHHHHHHHHHHHHTSSSCEEEE
T ss_pred             ecCChHHHHHHHHHHHHHCCCCEEEEE
Confidence            998765443    23444455566654

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=97.08  E-value=0.0019  Score=47.84  Aligned_cols=100  Identities=11%  Similarity=0.179  Sum_probs=62.4

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCc-eE-eChhHHHhHHHhhCCCCC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD-YV-FTEEELRNISRDASIPKP   81 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~-~v-~~~~~~~~~~~~~~~~~~   81 (202)
                      +..++.++.+||-.|+|  .|..+..+++..|++++++.-+++..+...+.++..|.. .+ +...|.   .+ .. ..+
T Consensus        58 ~~~~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~-~~-~~f  130 (287)
T 1kpg_A           58 GKLGLQPGMTLLDVGCG--WGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGW---EQ-FD-EPV  130 (287)
T ss_dssp             TTTTCCTTCEEEEETCT--TSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCG---GG-CC-CCC
T ss_pred             HHcCCCCcCEEEEECCc--ccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECCh---hh-CC-CCe
Confidence            34567899999999987  488888999878998888887776432223333333432 11 111121   11 11 579


Q ss_pred             eEEEecC-----CCch----HHHHHHhcccCcEEEEEe
Q psy2961          82 KLALNCV-----GGNS----ATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        82 d~vid~~-----g~~~----~~~~~~~l~~~G~~v~~g  110 (202)
                      |+|+...     +.+.    +..+.+.|+|+|+++...
T Consensus       131 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  168 (287)
T 1kpg_A          131 DRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHT  168 (287)
T ss_dssp             SEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             eEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            9998652     2111    233678999999998865

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=97.08  E-value=0.0005  Score=53.00  Aligned_cols=74  Identities=12%  Similarity=0.033  Sum_probs=49.3

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHC-CCcEEEEecCcccHHHHHHHHHh-cCCceEe-Chh-HHHhHHHhhCCCCCeEEEe
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKS-LGADYVF-TEE-ELRNISRDASIPKPKLALN   86 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~-g~~vi~~~~~~~~~~~~~~~~~~-lg~~~v~-~~~-~~~~~~~~~~~~~~d~vid   86 (202)
                      +.+|||+|++|.+|..+++.+... |.+|+++.++.+.    ...+.. .+...+. |-. +...+.+..  .++|+||.
T Consensus        24 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~----~~~~~~~~~v~~~~~Dl~~d~~~~~~~~--~~~d~Vih   97 (372)
T 3slg_A           24 AKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDR----LGDLVKHERMHFFEGDITINKEWVEYHV--KKCDVILP   97 (372)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTT----TGGGGGSTTEEEEECCTTTCHHHHHHHH--HHCSEEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhh----hhhhccCCCeEEEeCccCCCHHHHHHHh--ccCCEEEE
Confidence            468999999999999999888777 8999999987753    222222 2333332 222 222233333  26899999


Q ss_pred             cCCC
Q psy2961          87 CVGG   90 (202)
Q Consensus        87 ~~g~   90 (202)
                      +++.
T Consensus        98 ~A~~  101 (372)
T 3slg_A           98 LVAI  101 (372)
T ss_dssp             CBCC
T ss_pred             cCcc
Confidence            8874

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=97.07  E-value=0.0016  Score=49.64  Aligned_cols=76  Identities=12%  Similarity=0.136  Sum_probs=46.8

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHC--CCcEEEEecCcccHHHHHHHHHhc---CCceEe-ChhHHHhHHHhhCCCCCeEEE
Q psy2961          12 DVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSL---GADYVF-TEEELRNISRDASIPKPKLAL   85 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~--g~~vi~~~~~~~~~~~~~~~~~~l---g~~~v~-~~~~~~~~~~~~~~~~~d~vi   85 (202)
                      .+|||+|++|.+|..+++.+...  |.+|+++.++....  ..+.+.++   +...+. |-.+...+.+..  .++|+||
T Consensus         5 ~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~--~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~--~~~d~vi   80 (348)
T 1oc2_A            5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAG--NKANLEAILGDRVELVVGDIADAELVDKLA--AKADAIV   80 (348)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTC--CGGGTGGGCSSSEEEEECCTTCHHHHHHHH--TTCSEEE
T ss_pred             cEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCC--ChhHHhhhccCCeEEEECCCCCHHHHHHHh--hcCCEEE
Confidence            47999999999999999877777  88999888754210  01222333   222222 322222243433  3569999


Q ss_pred             ecCCCc
Q psy2961          86 NCVGGN   91 (202)
Q Consensus        86 d~~g~~   91 (202)
                      .+++..
T Consensus        81 h~A~~~   86 (348)
T 1oc2_A           81 HYAAES   86 (348)
T ss_dssp             ECCSCC
T ss_pred             ECCccc
Confidence            999753

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=97.07  E-value=0.0012  Score=48.08  Aligned_cols=102  Identities=20%  Similarity=0.208  Sum_probs=63.2

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCc-eE-eChhHHHhHHHhhCCCCC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD-YV-FTEEELRNISRDASIPKP   81 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~-~v-~~~~~~~~~~~~~~~~~~   81 (202)
                      +...+.++.+||-.|+|+  |..+..+++..|++++++.-+++..+...+.++..|.. .+ +...+..+   ......+
T Consensus        30 ~~~~~~~~~~VLDiGcG~--G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~f  104 (256)
T 1nkv_A           30 RVLRMKPGTRILDLGSGS--GEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG---YVANEKC  104 (256)
T ss_dssp             HHTCCCTTCEEEEETCTT--CHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT---CCCSSCE
T ss_pred             HhcCCCCCCEEEEECCCC--CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHh---CCcCCCC
Confidence            345678999999999974  88889999988999988887776433333334444432 11 11112211   1113579


Q ss_pred             eEEEecCCCc------h-HHHHHHhcccCcEEEEEe
Q psy2961          82 KLALNCVGGN------S-ATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        82 d~vid~~g~~------~-~~~~~~~l~~~G~~v~~g  110 (202)
                      |+|+....-.      . +..+.++|+|||+++...
T Consensus       105 D~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~  140 (256)
T 1nkv_A          105 DVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGE  140 (256)
T ss_dssp             EEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             CEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEec
Confidence            9998532211      1 233667899999998864

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=97.06  E-value=0.001  Score=48.54  Aligned_cols=100  Identities=12%  Similarity=0.109  Sum_probs=64.6

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCce--E-eChhHHHhHHHhhCCCC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY--V-FTEEELRNISRDASIPK   80 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~--v-~~~~~~~~~~~~~~~~~   80 (202)
                      +...++++.+||-.|+|  .|..+..+++..+++++++.-+++    ..+.+++.....  + +...|..++  ......
T Consensus        49 ~~~~~~~~~~vLdiG~G--~G~~~~~l~~~~~~~v~~vD~s~~----~~~~a~~~~~~~~~~~~~~~d~~~~--~~~~~~  120 (266)
T 3ujc_A           49 SDIELNENSKVLDIGSG--LGGGCMYINEKYGAHTHGIDICSN----IVNMANERVSGNNKIIFEANDILTK--EFPENN  120 (266)
T ss_dssp             TTCCCCTTCEEEEETCT--TSHHHHHHHHHHCCEEEEEESCHH----HHHHHHHTCCSCTTEEEEECCTTTC--CCCTTC
T ss_pred             HhcCCCCCCEEEEECCC--CCHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHHhhcCCCeEEEECccccC--CCCCCc
Confidence            34467899999999987  588888888877888888887765    466666553221  1 001111111  112357


Q ss_pred             CeEEEecCCCchH---------HHHHHhcccCcEEEEEec
Q psy2961          81 PKLALNCVGGNSA---------TNLLRTLVSKGVMVTYGG  111 (202)
Q Consensus        81 ~d~vid~~g~~~~---------~~~~~~l~~~G~~v~~g~  111 (202)
                      +|+|+....-.+.         ..+.+.|+|||.++....
T Consensus       121 fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  160 (266)
T 3ujc_A          121 FDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDY  160 (266)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence            9999876443222         336779999999998763

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=97.06  E-value=0.002  Score=47.96  Aligned_cols=62  Identities=10%  Similarity=0.145  Sum_probs=42.1

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhCCCCCeEEEecCCC
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNCVGG   90 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~~~~~d~vid~~g~   90 (202)
                      +|||+|++|.+|..+++.+. .|.+|+++.+++..          .-.+ +.++.++.+ +..    .++|+||.+++.
T Consensus         2 ~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~~----------~~~D-~~d~~~~~~~~~~----~~~d~vih~a~~   64 (299)
T 1n2s_A            2 NILLFGKTGQVGWELQRSLA-PVGNLIALDVHSKE----------FCGD-FSNPKGVAETVRK----LRPDVIVNAAAH   64 (299)
T ss_dssp             EEEEECTTSHHHHHHHHHTT-TTSEEEEECTTCSS----------SCCC-TTCHHHHHHHHHH----HCCSEEEECCCC
T ss_pred             eEEEECCCCHHHHHHHHHhh-cCCeEEEecccccc----------cccc-CCCHHHHHHHHHh----cCCCEEEECccc
Confidence            69999999999999998888 89999988766520          1011 112333333 322    258999999874

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=97.06  E-value=0.0011  Score=47.77  Aligned_cols=101  Identities=16%  Similarity=0.123  Sum_probs=60.3

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHC--CCcEEEEecCcccHHHHHHHHHhcCCce-Ee-ChhHHHh-HHHhhC-C--C
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGADY-VF-TEEELRN-ISRDAS-I--P   79 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~--g~~vi~~~~~~~~~~~~~~~~~~lg~~~-v~-~~~~~~~-~~~~~~-~--~   79 (202)
                      ..++.+||-.|+|  .|..++.+++..  +.+++++-.+++......+.++..|... +- ...+..+ +..... +  .
T Consensus        70 ~~~~~~vLdiG~G--~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~  147 (232)
T 3cbg_A           70 LTGAKQVLEIGVF--RGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLP  147 (232)
T ss_dssp             HHTCCEEEEECCT--TSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCC
T ss_pred             hcCCCEEEEecCC--CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCC
Confidence            4567899999987  688899999987  4677777766653222233334445432 11 1123323 333222 1  5


Q ss_pred             CCeEEEecCCCch----HHHHHHhcccCcEEEEEe
Q psy2961          80 KPKLALNCVGGNS----ATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        80 ~~d~vid~~g~~~----~~~~~~~l~~~G~~v~~g  110 (202)
                      .+|+||-....+.    +..+.+.|+|||.++.-.
T Consensus       148 ~fD~V~~d~~~~~~~~~l~~~~~~LkpgG~lv~~~  182 (232)
T 3cbg_A          148 EFDLIFIDADKRNYPRYYEIGLNLLRRGGLMVIDN  182 (232)
T ss_dssp             CEEEEEECSCGGGHHHHHHHHHHTEEEEEEEEEEC
T ss_pred             CcCEEEECCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence            6999884333222    234678999999998743

>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*

Probab=97.05  E-value=0.0031  Score=60.54  Aligned_cols=82  Identities=13%  Similarity=0.141  Sum_probs=54.0

Q ss_pred             CCCCEEEEeCCCcH-HHHHHHHHHHHCCCcEEEEecCcccH-HH-HHHHHHhc---CCceE---eC---hhHHHh-HHHh
Q psy2961           9 SPGDVVIQNGANSA-CGQNVIQIARHWGLKTINIVRNRDDI-DK-LKSYLKSL---GADYV---FT---EEELRN-ISRD   75 (202)
Q Consensus         9 ~~g~~VlI~g~~~~-vG~~~i~la~~~g~~vi~~~~~~~~~-~~-~~~~~~~l---g~~~v---~~---~~~~~~-~~~~   75 (202)
                      -.|+++||+|+++| ||.++++.+...|++|+.+.++.+.. .+ ..+..+++   |...+   .|   +.+... +.+.
T Consensus      2134 l~gKvaLVTGAs~GsIG~AiA~~La~~GA~Vvi~~r~~~~~~~~~~~~l~~~l~~~G~~~~~v~~Dvtd~~~v~~lv~~i 2213 (3089)
T 3zen_D         2134 XXDEVAVVTGASKGSIAASVVGQLLDGGATVIATTSRLDDDRLAFYKQLYRDHARFDATLWVVPANMASYSDIDKLVEWV 2213 (3089)
T ss_dssp             CCCCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESCCSHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHHCCCEEEEEeCChhhhhhHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHHH
Confidence            36899999999999 99999999999999999988776530 00 11222333   33322   12   344444 4443


Q ss_pred             hC-----CCCCeEEEecCCC
Q psy2961          76 AS-----IPKPKLALNCVGG   90 (202)
Q Consensus        76 ~~-----~~~~d~vid~~g~   90 (202)
                      ..     -+++|++|+++|.
T Consensus      2214 ~~~~~~~fG~IDILVNNAGi 2233 (3089)
T 3zen_D         2214 GTEQTESLGPQSIHLKDAQT 2233 (3089)
T ss_dssp             TSCCEEEESSSEEEECCCCC
T ss_pred             HhhhhhhcCCCCEEEECCCc
Confidence            32     1468999999885

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=97.04  E-value=0.0038  Score=47.56  Aligned_cols=87  Identities=9%  Similarity=0.178  Sum_probs=56.9

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhCCCCCeEEEec
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNC   87 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~~~~~d~vid~   87 (202)
                      -.|.+|.|.|.| .+|..+++.++..|.+|++..++.+.    .+.+.++|.... +   +.+ +      ...|+|+.+
T Consensus       153 l~g~~vgIIG~G-~iG~~iA~~l~~~G~~V~~~d~~~~~----~~~~~~~g~~~~-~---l~e~l------~~aDvVi~~  217 (330)
T 2gcg_A          153 LTQSTVGIIGLG-RIGQAIARRLKPFGVQRFLYTGRQPR----PEEAAEFQAEFV-S---TPELA------AQSDFIVVA  217 (330)
T ss_dssp             CTTCEEEEECCS-HHHHHHHHHHGGGTCCEEEEESSSCC----HHHHHTTTCEEC-C---HHHHH------HHCSEEEEC
T ss_pred             CCCCEEEEECcC-HHHHHHHHHHHHCCCEEEEECCCCcc----hhHHHhcCceeC-C---HHHHH------hhCCEEEEe
Confidence            357899999998 99999999999999999888766653    334455554432 2   222 2      234777776


Q ss_pred             CCCch-----H-HHHHHhcccCcEEEEEe
Q psy2961          88 VGGNS-----A-TNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        88 ~g~~~-----~-~~~~~~l~~~G~~v~~g  110 (202)
                      +....     . ...+..|+++..++.++
T Consensus       218 vp~~~~t~~~i~~~~~~~mk~gailIn~s  246 (330)
T 2gcg_A          218 CSLTPATEGLCNKDFFQKMKETAVFINIS  246 (330)
T ss_dssp             CCCCTTTTTCBSHHHHHHSCTTCEEEECS
T ss_pred             CCCChHHHHhhCHHHHhcCCCCcEEEECC
Confidence            65321     1 12456677777666654

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=97.04  E-value=0.00084  Score=50.77  Aligned_cols=75  Identities=8%  Similarity=0.114  Sum_probs=47.0

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCCCeEEEecCCC
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNCVGG   90 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~vid~~g~   90 (202)
                      .+|||+|++|.+|..+++.+...|.+|+++.++....   .+.+.. +...+. |-.+...+.+.....++|+||.+++.
T Consensus         2 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~---~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~d~vih~a~~   77 (330)
T 2c20_A            2 NSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGH---EDAITE-GAKFYNGDLRDKAFLRDVFTQENIEAVMHFAAD   77 (330)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCC---GGGSCT-TSEEEECCTTCHHHHHHHHHHSCEEEEEECCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCc---hhhcCC-CcEEEECCCCCHHHHHHHHhhcCCCEEEECCcc
Confidence            4799999999999999999888999999988765421   111111 223222 22222212222211379999999874

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=97.04  E-value=0.0021  Score=48.79  Aligned_cols=77  Identities=12%  Similarity=0.057  Sum_probs=47.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcC-----CceEe-ChhHHHhHHHhhCCCCCeE
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG-----ADYVF-TEEELRNISRDASIPKPKL   83 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg-----~~~v~-~~~~~~~~~~~~~~~~~d~   83 (202)
                      .+.+|||+||+|.+|..+++.+...|++|++++++.+... +...+.++.     ...+. |-.+...+.+..  .++|+
T Consensus         4 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~--~~~d~   80 (337)
T 2c29_D            4 QSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVK-KVKHLLDLPKAETHLTLWKADLADEGSFDEAI--KGCTG   80 (337)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHH-HHHHHHTSTTHHHHEEEEECCTTSTTTTHHHH--TTCSE
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhH-HHHHHHhcccCCCeEEEEEcCCCCHHHHHHHH--cCCCE
Confidence            4689999999999999999988889999998888765311 122222221     11121 212211133333  36899


Q ss_pred             EEecCC
Q psy2961          84 ALNCVG   89 (202)
Q Consensus        84 vid~~g   89 (202)
                      ||.+++
T Consensus        81 Vih~A~   86 (337)
T 2c29_D           81 VFHVAT   86 (337)
T ss_dssp             EEECCC
T ss_pred             EEEecc
Confidence            999875

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=97.04  E-value=0.0024  Score=49.09  Aligned_cols=87  Identities=14%  Similarity=0.103  Sum_probs=60.2

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhCCCCCeEEEec
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNC   87 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~~~~~d~vid~   87 (202)
                      -.|.+|.|.|.| .+|..+++.++.+|++|++..++.     +.+.+.+.|...+-   ++.+ +      ...|+|+-+
T Consensus       158 l~g~tvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~-----~~~~~~~~g~~~~~---~l~ell------~~aDiV~l~  222 (352)
T 3gg9_A          158 LKGQTLGIFGYG-KIGQLVAGYGRAFGMNVLVWGREN-----SKERARADGFAVAE---SKDALF------EQSDVLSVH  222 (352)
T ss_dssp             CTTCEEEEECCS-HHHHHHHHHHHHTTCEEEEECSHH-----HHHHHHHTTCEECS---SHHHHH------HHCSEEEEC
T ss_pred             CCCCEEEEEeEC-HHHHHHHHHHHhCCCEEEEECCCC-----CHHHHHhcCceEeC---CHHHHH------hhCCEEEEe
Confidence            368899999998 999999999999999988876553     23455667765431   2222 2      234777776


Q ss_pred             CCC-chH-----HHHHHhcccCcEEEEEe
Q psy2961          88 VGG-NSA-----TNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        88 ~g~-~~~-----~~~~~~l~~~G~~v~~g  110 (202)
                      +.. +.+     ...+..|++++.+|.++
T Consensus       223 ~Plt~~t~~li~~~~l~~mk~gailIN~a  251 (352)
T 3gg9_A          223 LRLNDETRSIITVADLTRMKPTALFVNTS  251 (352)
T ss_dssp             CCCSTTTTTCBCHHHHTTSCTTCEEEECS
T ss_pred             ccCcHHHHHhhCHHHHhhCCCCcEEEECC
Confidence            642 211     23677788888888876

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=97.03  E-value=0.0015  Score=46.62  Aligned_cols=102  Identities=11%  Similarity=0.095  Sum_probs=60.7

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHC--CCcEEEEecCcccHHHHHHHHHhcCCce-E-eChhHHHh-HHHhhC--CC
Q psy2961           7 SLSPGDVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGADY-V-FTEEELRN-ISRDAS--IP   79 (202)
Q Consensus         7 ~~~~g~~VlI~g~~~~vG~~~i~la~~~--g~~vi~~~~~~~~~~~~~~~~~~lg~~~-v-~~~~~~~~-~~~~~~--~~   79 (202)
                      ...++.+||-.|+|  .|..++.+++..  +.+++++-.+++......+.++..|... + +-..+..+ +.....  ..
T Consensus        55 ~~~~~~~vLdiG~G--~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  132 (223)
T 3duw_A           55 QIQGARNILEIGTL--GGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYE  132 (223)
T ss_dssp             HHHTCSEEEEECCT--TSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCC
T ss_pred             HhhCCCEEEEecCC--ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCC
Confidence            44678999999987  588888999887  5678777766654333334444455432 1 11122222 222211  14


Q ss_pred             CCeEEEecCCCch----HHHHHHhcccCcEEEEEe
Q psy2961          80 KPKLALNCVGGNS----ATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        80 ~~d~vid~~g~~~----~~~~~~~l~~~G~~v~~g  110 (202)
                      .+|+|+-....+.    +..+.+.|+|||.++.-.
T Consensus       133 ~fD~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~  167 (223)
T 3duw_A          133 PFDFIFIDADKQNNPAYFEWALKLSRPGTVIIGDN  167 (223)
T ss_dssp             CCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEES
T ss_pred             CcCEEEEcCCcHHHHHHHHHHHHhcCCCcEEEEeC
Confidence            6999885443332    233678999999877643

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=97.02  E-value=0.0014  Score=48.58  Aligned_cols=78  Identities=13%  Similarity=0.082  Sum_probs=58.0

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCV   88 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~   88 (202)
                      -.|.+|+|.|.++.+|..+++++...|++|+.+.+...                     ++.+   .+  ..+|++|.++
T Consensus       159 l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T~---------------------~L~~---~~--~~ADIVI~Av  212 (286)
T 4a5o_A          159 LYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTR---------------------DLAD---HV--SRADLVVVAA  212 (286)
T ss_dssp             CTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTCS---------------------CHHH---HH--HTCSEEEECC
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCCc---------------------CHHH---Hh--ccCCEEEECC
Confidence            47999999999977999999999999998776643221                     1111   11  4679999999


Q ss_pred             CCchHHHHHHhcccCcEEEEEeccC
Q psy2961          89 GGNSATNLLRTLVSKGVMVTYGGMS  113 (202)
Q Consensus        89 g~~~~~~~~~~l~~~G~~v~~g~~~  113 (202)
                      |.+.+. --++++++..++.+|...
T Consensus       213 g~p~~I-~~~~vk~GavVIDvgi~~  236 (286)
T 4a5o_A          213 GKPGLV-KGEWIKEGAIVIDVGINR  236 (286)
T ss_dssp             CCTTCB-CGGGSCTTCEEEECCSCS
T ss_pred             CCCCCC-CHHHcCCCeEEEEecccc
Confidence            987543 235679999999998543

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=97.02  E-value=0.00095  Score=51.13  Aligned_cols=76  Identities=12%  Similarity=0.071  Sum_probs=44.2

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHC-CCcEEEEecCcccHHHHHHHHHhc----CCceEe-ChhHHHhHHHhhCCCCCeEEEe
Q psy2961          13 VVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSL----GADYVF-TEEELRNISRDASIPKPKLALN   86 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~-g~~vi~~~~~~~~~~~~~~~~~~l----g~~~v~-~~~~~~~~~~~~~~~~~d~vid   86 (202)
                      +|||+|++|.+|..+++.+... |++|+++.++....  ..+.+.++    +...+. |-.+...+.+.....++|+||.
T Consensus         2 kvlVTGasG~iG~~l~~~L~~~~g~~V~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih   79 (361)
T 1kew_A            2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAG--NLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMH   79 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTC--CGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             EEEEECCCchHhHHHHHHHHhcCCCeEEEEecCCCCC--chhhhhhhhcCCCeEEEECCCCCHHHHHHHHhhcCCCEEEE
Confidence            5999999999999988777766 78998887654100  11222222    112222 2222211222221137899999


Q ss_pred             cCCC
Q psy2961          87 CVGG   90 (202)
Q Consensus        87 ~~g~   90 (202)
                      +++.
T Consensus        80 ~A~~   83 (361)
T 1kew_A           80 LAAE   83 (361)
T ss_dssp             CCSC
T ss_pred             CCCC
Confidence            9875

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=97.01  E-value=0.0028  Score=46.79  Aligned_cols=85  Identities=15%  Similarity=0.197  Sum_probs=57.5

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecCCC
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGG   90 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~g~   90 (202)
                      +.+++|+|+| +.|.+++..+...|.+++++.++.++    .+.+.+++... ...++   +      ..+|+||+|++.
T Consensus       118 ~k~vlvlGaG-Gaaraia~~L~~~G~~v~V~nRt~~k----a~~la~~~~~~-~~~~~---l------~~~DiVInaTp~  182 (269)
T 3phh_A          118 YQNALILGAG-GSAKALACELKKQGLQVSVLNRSSRG----LDFFQRLGCDC-FMEPP---K------SAFDLIINATSA  182 (269)
T ss_dssp             CCEEEEECCS-HHHHHHHHHHHHTTCEEEEECSSCTT----HHHHHHHTCEE-ESSCC---S------SCCSEEEECCTT
T ss_pred             CCEEEEECCC-HHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHCCCeE-ecHHH---h------ccCCEEEEcccC
Confidence            8899999997 89999999999999777777777664    33333666432 22222   1      278999998864


Q ss_pred             c-----hHH-H-HHHhcccCcEEEEEe
Q psy2961          91 N-----SAT-N-LLRTLVSKGVMVTYG  110 (202)
Q Consensus        91 ~-----~~~-~-~~~~l~~~G~~v~~g  110 (202)
                      .     .+. . +...++++..++.+.
T Consensus       183 Gm~~~~~l~~~~l~~~l~~~~~v~D~v  209 (269)
T 3phh_A          183 SLHNELPLNKEVLKGYFKEGKLAYDLA  209 (269)
T ss_dssp             CCCCSCSSCHHHHHHHHHHCSEEEESC
T ss_pred             CCCCCCCCChHHHHhhCCCCCEEEEeC
Confidence            2     121 2 233677888888765

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=97.01  E-value=0.0022  Score=45.72  Aligned_cols=102  Identities=14%  Similarity=0.108  Sum_probs=61.3

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHC--CCcEEEEecCcccHHHHHHHHHhcCCce-E-eChhHHHh-HHHhhCC---
Q psy2961           7 SLSPGDVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGADY-V-FTEEELRN-ISRDASI---   78 (202)
Q Consensus         7 ~~~~g~~VlI~g~~~~vG~~~i~la~~~--g~~vi~~~~~~~~~~~~~~~~~~lg~~~-v-~~~~~~~~-~~~~~~~---   78 (202)
                      ...++.+||-.|+|  .|..++.+++..  +.+++++..+++......+.++..|... + +-..+..+ +......   
T Consensus        61 ~~~~~~~vLdiG~G--~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  138 (225)
T 3tr6_A           61 KLMQAKKVIDIGTF--TGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQA  138 (225)
T ss_dssp             HHHTCSEEEEECCT--TSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCT
T ss_pred             HhhCCCEEEEeCCc--chHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCC
Confidence            34578899999987  488889999876  5677777766654333334444555432 1 11122222 3222211   


Q ss_pred             CCCeEEEecCCCch----HHHHHHhcccCcEEEEEe
Q psy2961          79 PKPKLALNCVGGNS----ATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        79 ~~~d~vid~~g~~~----~~~~~~~l~~~G~~v~~g  110 (202)
                      ..+|+|+-......    +..+.+.|+|||.++.-.
T Consensus       139 ~~fD~v~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~  174 (225)
T 3tr6_A          139 WQYDLIYIDADKANTDLYYEESLKLLREGGLIAVDN  174 (225)
T ss_dssp             TCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCccEEEECCCHHHHHHHHHHHHHhcCCCcEEEEeC
Confidence            57999884443322    233678999999998743

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.00  E-value=0.0016  Score=49.17  Aligned_cols=98  Identities=12%  Similarity=0.079  Sum_probs=53.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcccHHHHHHHHHhc----CCc-eEeChhHHHhHHHhhCCCCCeE
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSL----GAD-YVFTEEELRNISRDASIPKPKL   83 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~~~~~~~~~~~~l----g~~-~v~~~~~~~~~~~~~~~~~~d~   83 (202)
                      .+.+++|+|+| +.|.+++..+...|+ +++++.++++..++..+.++++    +.. .+++..+...+.+..  .++|+
T Consensus       147 ~gk~~lVlGAG-Gaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l--~~~Di  223 (312)
T 3t4e_A          147 RGKTMVLLGAG-GAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEAL--ASADI  223 (312)
T ss_dssp             TTCEEEEECCS-HHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHH--HHCSE
T ss_pred             CCCEEEEECcC-HHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhc--cCceE
Confidence            57899999997 899999999899999 5666666522111112222222    222 222222321111111  35799


Q ss_pred             EEecCCCchH---HH----HHHhcccCcEEEEEe
Q psy2961          84 ALNCVGGNSA---TN----LLRTLVSKGVMVTYG  110 (202)
Q Consensus        84 vid~~g~~~~---~~----~~~~l~~~G~~v~~g  110 (202)
                      ||+|++....   ..    -...+.++..++.+.
T Consensus       224 IINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~v  257 (312)
T 3t4e_A          224 LTNGTKVGMKPLENESLIGDVSLLRPELLVTECV  257 (312)
T ss_dssp             EEECSSTTSTTSTTCCSCCCGGGSCTTCEEEECC
T ss_pred             EEECCcCCCCCCCCCcccCCHHHcCCCCEEEEec
Confidence            9998864321   00    124566666666654

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=97.00  E-value=0.002  Score=48.00  Aligned_cols=77  Identities=8%  Similarity=0.080  Sum_probs=57.5

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCV   88 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~   88 (202)
                      -.|.+|+|.|+|..+|.-+++++...|++|+.+.+...                     +   +.+.+  ..+|+||-++
T Consensus       163 l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~---------------------~---L~~~~--~~ADIVI~Av  216 (301)
T 1a4i_A          163 IAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTA---------------------H---LDEEV--NKGDILVVAT  216 (301)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCS---------------------S---HHHHH--TTCSEEEECC
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECCcc---------------------c---HHHHh--ccCCEEEECC
Confidence            47899999999977999999999999998766543221                     1   12222  5679999999


Q ss_pred             CCchHHHHHHhcccCcEEEEEecc
Q psy2961          89 GGNSATNLLRTLVSKGVMVTYGGM  112 (202)
Q Consensus        89 g~~~~~~~~~~l~~~G~~v~~g~~  112 (202)
                      |.+.+. .-++++++..++.+|..
T Consensus       217 g~p~~I-~~~~vk~GavVIDVgi~  239 (301)
T 1a4i_A          217 GQPEMV-KGEWIKPGAIVIDCGIN  239 (301)
T ss_dssp             CCTTCB-CGGGSCTTCEEEECCCB
T ss_pred             CCcccC-CHHHcCCCcEEEEccCC
Confidence            988642 23457899999999854

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.99  E-value=0.0062  Score=39.71  Aligned_cols=77  Identities=13%  Similarity=0.203  Sum_probs=50.4

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHH-hcCCceEe-ChhHHHhHHHhhCCCCCeEEEecC
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK-SLGADYVF-TEEELRNISRDASIPKPKLALNCV   88 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~-~lg~~~v~-~~~~~~~~~~~~~~~~~d~vid~~   88 (202)
                      +.+|+|+|+| .+|..+++.+...|.+|+++.++++    +.+.+. .++...+. +..+...+.+. .-.++|+||-++
T Consensus         4 ~m~i~IiG~G-~iG~~~a~~L~~~g~~v~~~d~~~~----~~~~~~~~~~~~~~~~d~~~~~~l~~~-~~~~~d~vi~~~   77 (140)
T 1lss_A            4 GMYIIIAGIG-RVGYTLAKSLSEKGHDIVLIDIDKD----ICKKASAEIDALVINGDCTKIKTLEDA-GIEDADMYIAVT   77 (140)
T ss_dssp             -CEEEEECCS-HHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHCSSEEEESCTTSHHHHHHT-TTTTCSEEEECC
T ss_pred             CCEEEEECCC-HHHHHHHHHHHhCCCeEEEEECCHH----HHHHHHHhcCcEEEEcCCCCHHHHHHc-CcccCCEEEEee
Confidence            4589999986 9999999998889998888776654    344454 34654433 22222223222 124789999999


Q ss_pred             CCchH
Q psy2961          89 GGNSA   93 (202)
Q Consensus        89 g~~~~   93 (202)
                      +....
T Consensus        78 ~~~~~   82 (140)
T 1lss_A           78 GKEEV   82 (140)
T ss_dssp             SCHHH
T ss_pred             CCchH
Confidence            87654

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=96.98  E-value=0.0025  Score=46.33  Aligned_cols=101  Identities=13%  Similarity=0.034  Sum_probs=62.8

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCce-E-eChhHHHhHHHhhCCCCCeE
Q psy2961           6 NSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-V-FTEEELRNISRDASIPKPKL   83 (202)
Q Consensus         6 ~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-v-~~~~~~~~~~~~~~~~~~d~   83 (202)
                      ..+.++.+||-.|+|  .|..+..+++..+.+++++.-+++......+.++..|... + +...|..++.  .....+|+
T Consensus        42 ~~~~~~~~vLDiG~G--~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~  117 (257)
T 3f4k_A           42 NELTDDAKIADIGCG--TGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLP--FQNEELDL  117 (257)
T ss_dssp             CCCCTTCEEEEETCT--TSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCS--SCTTCEEE
T ss_pred             hcCCCCCeEEEeCCC--CCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCC--CCCCCEEE
Confidence            467889999999997  4888999999888788888777664333333444445321 1 1111211110  12357999


Q ss_pred             EEecCCCc-----h-HHHHHHhcccCcEEEEEe
Q psy2961          84 ALNCVGGN-----S-ATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        84 vid~~g~~-----~-~~~~~~~l~~~G~~v~~g  110 (202)
                      |+....-.     . +..+.++|+|+|.++...
T Consensus       118 v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~  150 (257)
T 3f4k_A          118 IWSEGAIYNIGFERGMNEWSKYLKKGGFIAVSE  150 (257)
T ss_dssp             EEEESCSCCCCHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             EEecChHhhcCHHHHHHHHHHHcCCCcEEEEEE
Confidence            97543221     1 233678999999998875

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A*

Probab=96.98  E-value=0.005  Score=56.45  Aligned_cols=80  Identities=14%  Similarity=0.189  Sum_probs=51.3

Q ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCcEEEEecC-cccHHHHHHHH-Hhc---CCceEe---C---hhHHHh-HHHhh
Q psy2961          10 PGDVVIQNGANSA-CGQNVIQIARHWGLKTINIVRN-RDDIDKLKSYL-KSL---GADYVF---T---EEELRN-ISRDA   76 (202)
Q Consensus        10 ~g~~VlI~g~~~~-vG~~~i~la~~~g~~vi~~~~~-~~~~~~~~~~~-~~l---g~~~v~---~---~~~~~~-~~~~~   76 (202)
                      .|.++||+|++++ +|.++++.+...|++|+.+.++ .+...+..+.+ .++   |....+   |   ..+... +.+..
T Consensus       651 ~gKvaLVTGASgGgIG~aIAr~LA~~GA~VVl~~~R~~~~l~~~a~eL~~el~~~G~~v~~v~~DVsd~esV~alv~~i~  730 (1878)
T 2uv9_A          651 QGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFSRQVTEYYQGIYARCGARGSQLVVVPFNQGSKQDVEALVNYIY  730 (1878)
T ss_dssp             TTCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCChHHHHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence            5789999999998 9999999988999998887544 33221112222 333   433222   3   344444 44443


Q ss_pred             CC----C-CCeEEEecCC
Q psy2961          77 SI----P-KPKLALNCVG   89 (202)
Q Consensus        77 ~~----~-~~d~vid~~g   89 (202)
                      ..    + .+|++|+++|
T Consensus       731 ~~~~~~G~~IDiLVnNAG  748 (1878)
T 2uv9_A          731 DTKNGLGWDLDYVVPFAA  748 (1878)
T ss_dssp             CSSSSCCCCCSEEEECCC
T ss_pred             HhhcccCCCCcEEEeCcc
Confidence            32    3 6999999987

>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*

Probab=96.97  E-value=0.00082  Score=48.22  Aligned_cols=72  Identities=7%  Similarity=0.067  Sum_probs=48.9

Q ss_pred             CCCEEEEeCC----------------CcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeC---hhHHH
Q psy2961          10 PGDVVIQNGA----------------NSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT---EEELR   70 (202)
Q Consensus        10 ~g~~VlI~g~----------------~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~---~~~~~   70 (202)
                      .|.+|||+||                +|++|.++++.+...|++|+.+.++..     .+.  ..|.+ +++   ..+..
T Consensus         7 ~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~~-----l~~--~~g~~-~~dv~~~~~~~   78 (226)
T 1u7z_A            7 KHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVS-----LPT--PPFVK-RVDVMTALEME   78 (226)
T ss_dssp             TTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCC-----CCC--CTTEE-EEECCSHHHHH
T ss_pred             CCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCcc-----ccc--CCCCe-EEccCcHHHHH
Confidence            5889999999                479999999999999999988876542     110  11222 333   23333


Q ss_pred             h-HHHhhCCCCCeEEEecCCCc
Q psy2961          71 N-ISRDASIPKPKLALNCVGGN   91 (202)
Q Consensus        71 ~-~~~~~~~~~~d~vid~~g~~   91 (202)
                      + +.+..  +++|++|.+++-.
T Consensus        79 ~~v~~~~--~~~Dili~~Aav~   98 (226)
T 1u7z_A           79 AAVNASV--QQQNIFIGCAAVA   98 (226)
T ss_dssp             HHHHHHG--GGCSEEEECCBCC
T ss_pred             HHHHHhc--CCCCEEEECCccc
Confidence            3 44443  4689999988744

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=96.97  E-value=0.0044  Score=44.44  Aligned_cols=98  Identities=12%  Similarity=0.030  Sum_probs=59.8

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCC-CcEEEEecCcccHHHHHHHHHhcCC--ceEe-ChhHHHh-HH-HhhCC
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWG-LKTINIVRNRDDIDKLKSYLKSLGA--DYVF-TEEELRN-IS-RDASI   78 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g-~~vi~~~~~~~~~~~~~~~~~~lg~--~~v~-~~~~~~~-~~-~~~~~   78 (202)
                      ...++++++||-.|+|+  |..+..+++..| .+|+++--+++    ..+.+++...  +.+. -..|... .. .... 
T Consensus        69 ~~~~~~~~~VLDlGcG~--G~~~~~la~~~~~~~v~gvD~s~~----~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~-  141 (230)
T 1fbn_A           69 VMPIKRDSKILYLGASA--GTTPSHVADIADKGIVYAIEYAPR----IMRELLDACAERENIIPILGDANKPQEYANIV-  141 (230)
T ss_dssp             CCCCCTTCEEEEESCCS--SHHHHHHHHHTTTSEEEEEESCHH----HHHHHHHHTTTCTTEEEEECCTTCGGGGTTTS-
T ss_pred             ccCCCCCCEEEEEcccC--CHHHHHHHHHcCCcEEEEEECCHH----HHHHHHHHhhcCCCeEEEECCCCCcccccccC-
Confidence            34577899999999984  888889999876 57777776664    3444433211  1111 0111111 00 1112 


Q ss_pred             CCCeEEEecCCCc---h--HHHHHHhcccCcEEEEE
Q psy2961          79 PKPKLALNCVGGN---S--ATNLLRTLVSKGVMVTY  109 (202)
Q Consensus        79 ~~~d~vid~~g~~---~--~~~~~~~l~~~G~~v~~  109 (202)
                      ..+|+|+.....+   .  +..+.+.|+|+|.++.+
T Consensus       142 ~~~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          142 EKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             CCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccEEEEEEecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence            4699999665544   1  33467899999999886

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=96.96  E-value=0.0014  Score=49.16  Aligned_cols=74  Identities=11%  Similarity=0.062  Sum_probs=47.5

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHC--CCcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCCCeEEEec
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNC   87 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~--g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~vid~   87 (202)
                      +.+|||+|++|.+|..+++.+...  |.+|+++.++.+.    .+...  +...+. |-.+...+.+.....++|+||.+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~----~~~~~--~~~~~~~D~~d~~~~~~~~~~~~~d~vih~   75 (312)
T 2yy7_A            2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLN----TDVVN--SGPFEVVNALDFNQIEHLVEVHKITDIYLM   75 (312)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCS----CHHHH--SSCEEECCTTCHHHHHHHHHHTTCCEEEEC
T ss_pred             CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCcc----ccccC--CCceEEecCCCHHHHHHHHhhcCCCEEEEC
Confidence            467999999999999998887777  8899999887653    11111  233332 32222222222211378999999


Q ss_pred             CCC
Q psy2961          88 VGG   90 (202)
Q Consensus        88 ~g~   90 (202)
                      ++.
T Consensus        76 a~~   78 (312)
T 2yy7_A           76 AAL   78 (312)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            875

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=96.95  E-value=0.0015  Score=47.11  Aligned_cols=97  Identities=12%  Similarity=-0.000  Sum_probs=56.2

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHh----cCCceEeChhHHHhHHHhhCCCCCeE
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS----LGADYVFTEEELRNISRDASIPKPKL   83 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~----lg~~~v~~~~~~~~~~~~~~~~~~d~   83 (202)
                      .+++.+||=.|+|+  |..+..+++....+++++..+++    ..+.+++    .+....+-..+..++........+|+
T Consensus        58 ~~~~~~vLDiGcGt--G~~~~~l~~~~~~~v~gvD~s~~----~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~  131 (236)
T 1zx0_A           58 SSKGGRVLEVGFGM--AIAASKVQEAPIDEHWIIECNDG----VFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDG  131 (236)
T ss_dssp             TTTCEEEEEECCTT--SHHHHHHHTSCEEEEEEEECCHH----HHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEE
T ss_pred             CCCCCeEEEEeccC--CHHHHHHHhcCCCeEEEEcCCHH----HHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEE
Confidence            36788999999874  67777776544446777766665    3444433    33221111223322211223357999


Q ss_pred             EEe-cCC----Cch-------HHHHHHhcccCcEEEEEe
Q psy2961          84 ALN-CVG----GNS-------ATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        84 vid-~~g----~~~-------~~~~~~~l~~~G~~v~~g  110 (202)
                      |+- +.+    ...       +..+.+.|+|||+++.+.
T Consensus       132 V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~  170 (236)
T 1zx0_A          132 ILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             EEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             EEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence            987 332    111       334778999999998764

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=96.93  E-value=0.00037  Score=52.59  Aligned_cols=96  Identities=13%  Similarity=0.099  Sum_probs=61.6

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCC--ceE-----eChhHHHhHHHhhCCCCC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA--DYV-----FTEEELRNISRDASIPKP   81 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~--~~v-----~~~~~~~~~~~~~~~~~~   81 (202)
                      -.|.+|+|.|+|.-+|..+++++...|++|+++.++...   ..+...+++.  ...     .+..++.+   .+  ..+
T Consensus       175 l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~---l~~ra~~la~~~~~~t~~~~t~~~~L~e---~l--~~A  246 (320)
T 1edz_A          175 LYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQ---KFTRGESLKLNKHHVEDLGEYSEDLLKK---CS--LDS  246 (320)
T ss_dssp             TTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEE---EEESCCCSSCCCCEEEEEEECCHHHHHH---HH--HHC
T ss_pred             CCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHH---HHhHHHHHhhhcccccccccccHhHHHH---Hh--ccC
Confidence            368899999999778999999999999987766544221   0112222332  111     11145444   22  356


Q ss_pred             eEEEecCCCchHHHHHHhcccCcEEEEEecc
Q psy2961          82 KLALNCVGGNSATNLLRTLVSKGVMVTYGGM  112 (202)
Q Consensus        82 d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~  112 (202)
                      |+||-++|.+...---++++++..++.+|..
T Consensus       247 DIVIsAtg~p~~vI~~e~vk~GavVIDVgi~  277 (320)
T 1edz_A          247 DVVITGVPSENYKFPTEYIKEGAVCINFACT  277 (320)
T ss_dssp             SEEEECCCCTTCCBCTTTSCTTEEEEECSSS
T ss_pred             CEEEECCCCCcceeCHHHcCCCeEEEEcCCC
Confidence            9999999987642223457888888888744

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=96.92  E-value=0.0023  Score=47.27  Aligned_cols=102  Identities=19%  Similarity=0.234  Sum_probs=62.2

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHC--CCcEEEEecCcccHHHHHHHHHhc-C--CceEe-ChhHHHhHHHhhCC
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSL-G--ADYVF-TEEELRNISRDASI   78 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~--g~~vi~~~~~~~~~~~~~~~~~~l-g--~~~v~-~~~~~~~~~~~~~~   78 (202)
                      ...+.++++||-.|+|  .|..+..+++..  +.+++++..+++..+...+.++.. |  .+.+. ...|..+.  ....
T Consensus        94 ~~~~~~~~~vLdiG~G--~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~--~~~~  169 (280)
T 1i9g_A           94 EGDIFPGARVLEAGAG--SGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS--ELPD  169 (280)
T ss_dssp             HTTCCTTCEEEEECCT--TSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC--CCCT
T ss_pred             HcCCCCCCEEEEEccc--ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhc--CCCC
Confidence            4567899999999987  588888898875  457777766655322222223333 4  22111 11222111  1123


Q ss_pred             CCCeEEEecCCCc-h-HHHHHHhcccCcEEEEEe
Q psy2961          79 PKPKLALNCVGGN-S-ATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        79 ~~~d~vid~~g~~-~-~~~~~~~l~~~G~~v~~g  110 (202)
                      ..+|+|+.....+ . +..+.+.|+++|+++.+.
T Consensus       170 ~~~D~v~~~~~~~~~~l~~~~~~L~pgG~l~~~~  203 (280)
T 1i9g_A          170 GSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYV  203 (280)
T ss_dssp             TCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             CceeEEEECCcCHHHHHHHHHHhCCCCCEEEEEe
Confidence            5699998766544 2 334788999999999875

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=96.92  E-value=0.00099  Score=51.24  Aligned_cols=35  Identities=17%  Similarity=0.244  Sum_probs=29.4

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      .+|||+|++|.+|..+++.+...|++|+++.++.+
T Consensus         2 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   36 (372)
T 1db3_A            2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRAS   36 (372)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCc
Confidence            58999999999999999988888999999887654

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A*

Probab=96.92  E-value=0.0058  Score=56.11  Aligned_cols=80  Identities=13%  Similarity=0.174  Sum_probs=51.0

Q ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCcEEEEecC-cccHHHHHHHH-Hhc---CCceEe---C---hhHHHh-HHHhh
Q psy2961          10 PGDVVIQNGANSA-CGQNVIQIARHWGLKTINIVRN-RDDIDKLKSYL-KSL---GADYVF---T---EEELRN-ISRDA   76 (202)
Q Consensus        10 ~g~~VlI~g~~~~-vG~~~i~la~~~g~~vi~~~~~-~~~~~~~~~~~-~~l---g~~~v~---~---~~~~~~-~~~~~   76 (202)
                      .|.++||+|++++ +|.++++.+...|++|+.+.++ .+...+..+.+ +++   |....+   |   ..+... +.+..
T Consensus       674 ~gKvaLVTGASsGgIG~aIA~~La~~GA~Vvl~~~R~~~~l~~~~~eL~~~~~~~g~~v~~v~~DVsd~~sV~alv~~i~  753 (1887)
T 2uv8_A          674 KDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIEFIY  753 (1887)
T ss_dssp             TTCEEEEESCCSSSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHHHHH
Confidence            5789999999998 9999999999999999888544 33222212222 233   332221   2   344444 44433


Q ss_pred             CC------C-CCeEEEecCC
Q psy2961          77 SI------P-KPKLALNCVG   89 (202)
Q Consensus        77 ~~------~-~~d~vid~~g   89 (202)
                      ..      + .+|++|+++|
T Consensus       754 ~~~~~~G~G~~LDiLVNNAG  773 (1887)
T 2uv8_A          754 DTEKNGGLGWDLDAIIPFAA  773 (1887)
T ss_dssp             SCTTTTSCCCCCSEEEECCC
T ss_pred             HhccccccCCCCeEEEECCC
Confidence            32      2 6999999987

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=96.92  E-value=0.0048  Score=44.90  Aligned_cols=101  Identities=13%  Similarity=0.095  Sum_probs=60.2

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHC--CCcEEEEecCcccHHHHHHHHHhcCCce-Ee-ChhHHHh-HHHhh----C
Q psy2961           7 SLSPGDVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGADY-VF-TEEELRN-ISRDA----S   77 (202)
Q Consensus         7 ~~~~g~~VlI~g~~~~vG~~~i~la~~~--g~~vi~~~~~~~~~~~~~~~~~~lg~~~-v~-~~~~~~~-~~~~~----~   77 (202)
                      ...++.+||-.|+|  .|..++.+++.+  +.+++++-.+++......+.++..|... +- -..+..+ +....    .
T Consensus        76 ~~~~~~~VLeiG~G--~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~  153 (247)
T 1sui_A           76 KLINAKNTMEIGVY--TGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKN  153 (247)
T ss_dssp             HHTTCCEEEEECCG--GGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGG
T ss_pred             HhhCcCEEEEeCCC--cCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCC
Confidence            34567899999986  588888899886  5778887777654333334444555521 11 1122222 22221    1


Q ss_pred             CCCCeEEEecCCCch----HHHHHHhcccCcEEEEE
Q psy2961          78 IPKPKLALNCVGGNS----ATNLLRTLVSKGVMVTY  109 (202)
Q Consensus        78 ~~~~d~vid~~g~~~----~~~~~~~l~~~G~~v~~  109 (202)
                      ...||+||-......    +..+.++|++||.++.-
T Consensus       154 ~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d  189 (247)
T 1sui_A          154 HGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYD  189 (247)
T ss_dssp             TTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEE
T ss_pred             CCCEEEEEEcCchHHHHHHHHHHHHhCCCCeEEEEe
Confidence            257999875433222    23467899999999864

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=96.92  E-value=0.0045  Score=58.87  Aligned_cols=83  Identities=13%  Similarity=0.113  Sum_probs=53.4

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCc-EEEEecCcccHH---HHHHHHHhcCCceEe---C---hhHHHh-HHHhh
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDID---KLKSYLKSLGADYVF---T---EEELRN-ISRDA   76 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~~-vi~~~~~~~~~~---~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~   76 (202)
                      +.++.++||+|+++++|.++++.+...|++ ++.+.++.....   +..+.+++.|....+   |   .++... +.+..
T Consensus      1881 ~~~~k~~lITGgs~GIG~aia~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvsd~~~v~~~~~~~~ 1960 (2512)
T 2vz8_A         1881 CPPHKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRRQGVQVLVSTSNASSLDGARSLITEAT 1960 (2512)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCCEEEEECSSCCCSHHHHHHHHHHHHTTCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEeCCCcchHHHHHHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHH
Confidence            468899999999999999999999999998 455555543221   122333445654322   2   344444 43322


Q ss_pred             CCCCCeEEEecCCC
Q psy2961          77 SIPKPKLALNCVGG   90 (202)
Q Consensus        77 ~~~~~d~vid~~g~   90 (202)
                      ..+++|++|+++|.
T Consensus      1961 ~~g~id~lVnnAgv 1974 (2512)
T 2vz8_A         1961 QLGPVGGVFNLAMV 1974 (2512)
T ss_dssp             HHSCEEEEEECCCC
T ss_pred             hcCCCcEEEECCCc
Confidence            22579999999873

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=96.89  E-value=0.0053  Score=47.32  Aligned_cols=86  Identities=9%  Similarity=0.134  Sum_probs=57.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVG   89 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~g   89 (202)
                      .|.+|.|.|.| .+|..+++.++.+|++|++..++..     .+.+.+.|+..    .++.++   .  ...|+|+-++.
T Consensus       175 ~gktvGIIGlG-~IG~~vA~~l~~fG~~V~~~d~~~~-----~~~~~~~g~~~----~~l~el---l--~~aDvV~l~~P  239 (365)
T 4hy3_A          175 AGSEIGIVGFG-DLGKALRRVLSGFRARIRVFDPWLP-----RSMLEENGVEP----ASLEDV---L--TKSDFIFVVAA  239 (365)
T ss_dssp             SSSEEEEECCS-HHHHHHHHHHTTSCCEEEEECSSSC-----HHHHHHTTCEE----CCHHHH---H--HSCSEEEECSC
T ss_pred             CCCEEEEecCC-cccHHHHHhhhhCCCEEEEECCCCC-----HHHHhhcCeee----CCHHHH---H--hcCCEEEEcCc
Confidence            58899999999 9999999999999999888776643     34455566542    122221   1  24577776554


Q ss_pred             Cc-hH-----HHHHHhcccCcEEEEEe
Q psy2961          90 GN-SA-----TNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        90 ~~-~~-----~~~~~~l~~~G~~v~~g  110 (202)
                      .. .+     ...+..|++++.+|.++
T Consensus       240 lt~~T~~li~~~~l~~mk~gailIN~a  266 (365)
T 4hy3_A          240 VTSENKRFLGAEAFSSMRRGAAFILLS  266 (365)
T ss_dssp             SSCC---CCCHHHHHTSCTTCEEEECS
T ss_pred             CCHHHHhhcCHHHHhcCCCCcEEEECc
Confidence            22 11     23567777887777776

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=96.89  E-value=0.001  Score=49.95  Aligned_cols=36  Identities=17%  Similarity=0.156  Sum_probs=29.4

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      +.+|||+|++|.+|..+++.+...|.+|+++.++.+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   37 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRA   37 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC----
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCC
Confidence            568999999999999999988889999998886553

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=96.88  E-value=0.0027  Score=50.82  Aligned_cols=39  Identities=21%  Similarity=0.214  Sum_probs=33.2

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHC---CCcEEEEecCccc
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHW---GLKTINIVRNRDD   47 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~---g~~vi~~~~~~~~   47 (202)
                      ..+.+|||+|++|.+|..+++.+...   |.+|+.++++++.
T Consensus        71 ~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~  112 (478)
T 4dqv_A           71 PELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESD  112 (478)
T ss_dssp             SCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence            45789999999999999988777666   8999999988763

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=96.87  E-value=0.055  Score=40.89  Aligned_cols=88  Identities=11%  Similarity=0.068  Sum_probs=54.3

Q ss_pred             EEEEeCCCcHHHHHH-HHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecCCCc
Q psy2961          13 VVIQNGANSACGQNV-IQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGN   91 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~-i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~g~~   91 (202)
                      +|.|.|+| .+|... +...+..+.+++++++...+  ...+..+++|...++  .++.+   .....++|+|+.|+...
T Consensus         2 ~vgiiG~G-~~g~~~~~~~l~~~~~~~vav~d~~~~--~~~~~~~~~g~~~~~--~~~~~---~l~~~~~D~V~i~tp~~   73 (332)
T 2glx_A            2 RWGLIGAS-TIAREWVIGAIRATGGEVVSMMSTSAE--RGAAYATENGIGKSV--TSVEE---LVGDPDVDAVYVSTTNE   73 (332)
T ss_dssp             EEEEESCC-HHHHHTHHHHHHHTTCEEEEEECSCHH--HHHHHHHHTTCSCCB--SCHHH---HHTCTTCCEEEECSCGG
T ss_pred             eEEEEccc-HHHHHhhhHHhhcCCCeEEEEECCCHH--HHHHHHHHcCCCccc--CCHHH---HhcCCCCCEEEEeCChh
Confidence            68899997 899875 54333378888888877653  122344567765333  23333   12224689999999876


Q ss_pred             hHHH-HHHhcccCcEEEEE
Q psy2961          92 SATN-LLRTLVSKGVMVTY  109 (202)
Q Consensus        92 ~~~~-~~~~l~~~G~~v~~  109 (202)
                      .... +..++..| +-|++
T Consensus        74 ~h~~~~~~al~~G-k~v~~   91 (332)
T 2glx_A           74 LHREQTLAAIRAG-KHVLC   91 (332)
T ss_dssp             GHHHHHHHHHHTT-CEEEE
T ss_pred             HhHHHHHHHHHCC-CeEEE
Confidence            5444 55667665 44444

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=96.85  E-value=0.00094  Score=50.74  Aligned_cols=72  Identities=15%  Similarity=0.038  Sum_probs=45.8

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHC-CCcEEEEecCcccHHHHHHHHHh-cCCceEe-ChhHHHh-HHHhhCCCCCeEEEecC
Q psy2961          13 VVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKS-LGADYVF-TEEELRN-ISRDASIPKPKLALNCV   88 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~-g~~vi~~~~~~~~~~~~~~~~~~-lg~~~v~-~~~~~~~-~~~~~~~~~~d~vid~~   88 (202)
                      +|||+|++|.+|..+++.+... |.+|++++++.+.    .+.+.. .+...+. |-.+..+ +.+..  .++|+||.++
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~----~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~~d~vih~A   75 (345)
T 2bll_A            2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDA----ISRFLNHPHFHFVEGDISIHSEWIEYHV--KKCDVVLPLV   75 (345)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGG----GGGGTTCTTEEEEECCTTTCSHHHHHHH--HHCSEEEECB
T ss_pred             eEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcch----HHHhhcCCCeEEEeccccCcHHHHHhhc--cCCCEEEEcc
Confidence            6999999999999999888887 8999999887653    222111 1222222 2222112 33222  2679999988


Q ss_pred             CC
Q psy2961          89 GG   90 (202)
Q Consensus        89 g~   90 (202)
                      +.
T Consensus        76 ~~   77 (345)
T 2bll_A           76 AI   77 (345)
T ss_dssp             CC
T ss_pred             cc
Confidence            73

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=96.85  E-value=0.0022  Score=47.20  Aligned_cols=77  Identities=9%  Similarity=0.064  Sum_probs=56.7

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCV   88 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~   88 (202)
                      -.|.+|+|.|.|+.+|..+++++...|++|+.+.+...                     ++.+   .+  ..+|++|.++
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t~---------------------~L~~---~~--~~ADIVI~Av  201 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKTK---------------------DIGS---MT--RSSKIVVVAV  201 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCS---------------------CHHH---HH--HHSSEEEECS
T ss_pred             cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCcc---------------------cHHH---hh--ccCCEEEECC
Confidence            57899999999977999999999999998776643221                     1112   11  3468999999


Q ss_pred             CCchHHHHHHhcccCcEEEEEecc
Q psy2961          89 GGNSATNLLRTLVSKGVMVTYGGM  112 (202)
Q Consensus        89 g~~~~~~~~~~l~~~G~~v~~g~~  112 (202)
                      |.+.+. --+++++|..++.+|..
T Consensus       202 g~p~~I-~~~~vk~GavVIDvgi~  224 (276)
T 3ngx_A          202 GRPGFL-NREMVTPGSVVIDVGIN  224 (276)
T ss_dssp             SCTTCB-CGGGCCTTCEEEECCCE
T ss_pred             CCCccc-cHhhccCCcEEEEeccC
Confidence            987542 23567999999998854

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=96.84  E-value=0.0042  Score=47.61  Aligned_cols=36  Identities=19%  Similarity=0.217  Sum_probs=31.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      .|.+|.|.|.| .+|...++.++..|++|++..++.+
T Consensus       167 ~g~tvGIIG~G-~IG~~vA~~l~~~G~~V~~~d~~~~  202 (347)
T 1mx3_A          167 RGETLGIIGLG-RVGQAVALRAKAFGFNVLFYDPYLS  202 (347)
T ss_dssp             TTCEEEEECCS-HHHHHHHHHHHTTTCEEEEECTTSC
T ss_pred             CCCEEEEEeEC-HHHHHHHHHHHHCCCEEEEECCCcc
Confidence            67899999998 9999999999999999888765544

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=96.84  E-value=0.004  Score=44.43  Aligned_cols=99  Identities=17%  Similarity=0.158  Sum_probs=58.6

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHCC--CcEEEEecCcccHHHHHHHHHhc-CCceEeChhHHHh-H-HHhhCCCC
Q psy2961           6 NSLSPGDVVIQNGANSACGQNVIQIARHWG--LKTINIVRNRDDIDKLKSYLKSL-GADYVFTEEELRN-I-SRDASIPK   80 (202)
Q Consensus         6 ~~~~~g~~VlI~g~~~~vG~~~i~la~~~g--~~vi~~~~~~~~~~~~~~~~~~l-g~~~v~~~~~~~~-~-~~~~~~~~   80 (202)
                      ..++++++||-.|+|+  |..+..+++..|  .+++++-.+++......+.++.. ....+.  .|... . .... ...
T Consensus        69 ~~~~~~~~vLDlG~G~--G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~--~d~~~~~~~~~~-~~~  143 (227)
T 1g8a_A           69 FPIKPGKSVLYLGIAS--GTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPIL--GDATKPEEYRAL-VPK  143 (227)
T ss_dssp             CCCCTTCEEEEETTTS--TTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEE--CCTTCGGGGTTT-CCC
T ss_pred             cCCCCCCEEEEEeccC--CHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEE--ccCCCcchhhcc-cCC
Confidence            3477899999999974  888888998864  57777766654221222333322 111111  11111 0 0111 246


Q ss_pred             CeEEEecCCCc----h-HHHHHHhcccCcEEEEE
Q psy2961          81 PKLALNCVGGN----S-ATNLLRTLVSKGVMVTY  109 (202)
Q Consensus        81 ~d~vid~~g~~----~-~~~~~~~l~~~G~~v~~  109 (202)
                      +|+|+-....+    . +..+.+.|+|+|.++..
T Consensus       144 ~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  177 (227)
T 1g8a_A          144 VDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ceEEEECCCCHhHHHHHHHHHHHhcCCCCEEEEE
Confidence            99998655443    2 33467899999999887

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=96.83  E-value=0.0027  Score=46.93  Aligned_cols=88  Identities=16%  Similarity=0.138  Sum_probs=60.2

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCCCeEEEecCCC
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNCVGG   90 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~vid~~g~   90 (202)
                      .+|||+|+ |.+|..+++.+...|.+|++++++++.    .+.+...+.+.+. |-.+   +.    -.++|+||.+++.
T Consensus         6 ~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~----~~~~~~~~~~~~~~D~~d---~~----~~~~d~vi~~a~~   73 (286)
T 3ius_A            6 GTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQ----MEAIRASGAEPLLWPGEE---PS----LDGVTHLLISTAP   73 (286)
T ss_dssp             CEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGG----HHHHHHTTEEEEESSSSC---CC----CTTCCEEEECCCC
T ss_pred             CcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhh----hhhHhhCCCeEEEecccc---cc----cCCCCEEEECCCc
Confidence            58999998 899999999999899999999988763    4555555554443 2222   11    2678999999874


Q ss_pred             ch-----HHHHHHhccc----CcEEEEEec
Q psy2961          91 NS-----ATNLLRTLVS----KGVMVTYGG  111 (202)
Q Consensus        91 ~~-----~~~~~~~l~~----~G~~v~~g~  111 (202)
                      ..     ...+++.++.    -.++|.++.
T Consensus        74 ~~~~~~~~~~l~~a~~~~~~~~~~~v~~Ss  103 (286)
T 3ius_A           74 DSGGDPVLAALGDQIAARAAQFRWVGYLST  103 (286)
T ss_dssp             BTTBCHHHHHHHHHHHHTGGGCSEEEEEEE
T ss_pred             cccccHHHHHHHHHHHhhcCCceEEEEeec
Confidence            32     2234444433    268888764

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=96.83  E-value=0.0021  Score=50.54  Aligned_cols=38  Identities=16%  Similarity=0.281  Sum_probs=33.4

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      .++.+|||+||+|.+|..+++.+...|++|++++++++
T Consensus        67 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~R~~~  104 (427)
T 4f6c_A           67 RPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADN  104 (427)
T ss_dssp             CCCEEEEEECTTSHHHHHHHHHHTTTEEEEEEEEECSS
T ss_pred             CCCCEEEEecCCcHHHHHHHHHHHcCCCEEEEEECCCC
Confidence            34568999999999999999888888999999998876

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=96.83  E-value=0.0044  Score=44.78  Aligned_cols=101  Identities=14%  Similarity=0.147  Sum_probs=59.7

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHC--CCcEEEEecCcccHHHHHHHHHhcCCce-E-eChhHHHh-HHHhh----C
Q psy2961           7 SLSPGDVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGADY-V-FTEEELRN-ISRDA----S   77 (202)
Q Consensus         7 ~~~~g~~VlI~g~~~~vG~~~i~la~~~--g~~vi~~~~~~~~~~~~~~~~~~lg~~~-v-~~~~~~~~-~~~~~----~   77 (202)
                      ...++.+||-.|++  .|..++.+++.+  +.+++++-.+++......+.++..|... + +-..+..+ +....    .
T Consensus        67 ~~~~~~~VLeiG~G--~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~  144 (237)
T 3c3y_A           67 KLVNAKKTIEVGVF--TGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQES  144 (237)
T ss_dssp             HHTTCCEEEEECCT--TSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTC
T ss_pred             HhhCCCEEEEeCCC--CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCC
Confidence            34567899999987  578888888886  5677777666653322333444456532 1 11122222 22221    1


Q ss_pred             CCCCeEEEecCCCch----HHHHHHhcccCcEEEEE
Q psy2961          78 IPKPKLALNCVGGNS----ATNLLRTLVSKGVMVTY  109 (202)
Q Consensus        78 ~~~~d~vid~~g~~~----~~~~~~~l~~~G~~v~~  109 (202)
                      ...+|+||-......    +..+.++|++||.++.-
T Consensus       145 ~~~fD~I~~d~~~~~~~~~l~~~~~~L~pGG~lv~d  180 (237)
T 3c3y_A          145 EGSYDFGFVDADKPNYIKYHERLMKLVKVGGIVAYD  180 (237)
T ss_dssp             TTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCcCEEEECCchHHHHHHHHHHHHhcCCCeEEEEe
Confidence            257999875443322    23367899999998764

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=96.82  E-value=0.0044  Score=49.45  Aligned_cols=93  Identities=14%  Similarity=0.118  Sum_probs=55.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC-CCcEEEEecCcccHHHHHHHHH-hcCCceE-eChhHHHhHHHhhCCCCCeEEEe
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLK-SLGADYV-FTEEELRNISRDASIPKPKLALN   86 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~-g~~vi~~~~~~~~~~~~~~~~~-~lg~~~v-~~~~~~~~~~~~~~~~~~d~vid   86 (202)
                      .+.+|+|+|+ |++|..++..+... |.+|+++.++.+    +.+.+. ..+...+ ++..+..++.+..  .++|+||+
T Consensus        22 ~~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~~~----ka~~la~~~~~~~~~~D~~d~~~l~~~l--~~~DvVIn   94 (467)
T 2axq_A           22 MGKNVLLLGS-GFVAQPVIDTLAANDDINVTVACRTLA----NAQALAKPSGSKAISLDVTDDSALDKVL--ADNDVVIS   94 (467)
T ss_dssp             -CEEEEEECC-STTHHHHHHHHHTSTTEEEEEEESSHH----HHHHHHGGGTCEEEECCTTCHHHHHHHH--HTSSEEEE
T ss_pred             CCCEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECCHH----HHHHHHHhcCCcEEEEecCCHHHHHHHH--cCCCEEEE
Confidence            4568999998 59999988887777 677666666554    333332 2343322 2332222222222  36899999


Q ss_pred             cCCCchHHH-HHHhcccCcEEEEE
Q psy2961          87 CVGGNSATN-LLRTLVSKGVMVTY  109 (202)
Q Consensus        87 ~~g~~~~~~-~~~~l~~~G~~v~~  109 (202)
                      |++...... ...++..+-.++..
T Consensus        95 ~tp~~~~~~v~~a~l~~g~~vvd~  118 (467)
T 2axq_A           95 LIPYTFHPNVVKSAIRTKTDVVTS  118 (467)
T ss_dssp             CSCGGGHHHHHHHHHHHTCEEEEC
T ss_pred             CCchhhhHHHHHHHHhcCCEEEEe
Confidence            998653332 33456666666654

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=96.81  E-value=0.014  Score=44.09  Aligned_cols=89  Identities=16%  Similarity=0.114  Sum_probs=58.0

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--cEEEEecCcccHHHHHHHHHhcCCc-eEe-ChhHHHhHHHhhCCCCCeEEEec
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGL--KTINIVRNRDDIDKLKSYLKSLGAD-YVF-TEEELRNISRDASIPKPKLALNC   87 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~--~vi~~~~~~~~~~~~~~~~~~lg~~-~v~-~~~~~~~~~~~~~~~~~d~vid~   87 (202)
                      .+|.|+|.| .+|...++.++..|.  +|++..++++    +.+.+.++|.. ... +..+.     ..  .+.|+||-|
T Consensus        34 ~kI~IIG~G-~mG~slA~~l~~~G~~~~V~~~dr~~~----~~~~a~~~G~~~~~~~~~~~~-----~~--~~aDvVila  101 (314)
T 3ggo_A           34 QNVLIVGVG-FMGGSFAKSLRRSGFKGKIYGYDINPE----SISKAVDLGIIDEGTTSIAKV-----ED--FSPDFVMLS  101 (314)
T ss_dssp             SEEEEESCS-HHHHHHHHHHHHTTCCSEEEEECSCHH----HHHHHHHTTSCSEEESCTTGG-----GG--GCCSEEEEC
T ss_pred             CEEEEEeeC-HHHHHHHHHHHhCCCCCEEEEEECCHH----HHHHHHHCCCcchhcCCHHHH-----hh--ccCCEEEEe
Confidence            689999987 999999999999998  7777665554    46667777763 222 11110     11  457888888


Q ss_pred             CCCchHHH----HHHhcccCcEEEEEecc
Q psy2961          88 VGGNSATN----LLRTLVSKGVMVTYGGM  112 (202)
Q Consensus        88 ~g~~~~~~----~~~~l~~~G~~v~~g~~  112 (202)
                      +.......    +...++++..++.++..
T Consensus       102 vp~~~~~~vl~~l~~~l~~~~iv~d~~Sv  130 (314)
T 3ggo_A          102 SPVRTFREIAKKLSYILSEDATVTDQGSV  130 (314)
T ss_dssp             SCGGGHHHHHHHHHHHSCTTCEEEECCSC
T ss_pred             CCHHHHHHHHHHHhhccCCCcEEEECCCC
Confidence            87654433    33456667666666543

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=96.81  E-value=0.0087  Score=46.69  Aligned_cols=97  Identities=18%  Similarity=0.187  Sum_probs=57.1

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCc-eEeChhHHHh-HHHhhCCCCCeEEE
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD-YVFTEEELRN-ISRDASIPKPKLAL   85 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~-~v~~~~~~~~-~~~~~~~~~~d~vi   85 (202)
                      +++|++||=.|+|  .|..++.+|+. |++|+++..++...+...+.++..|.. .+. ..|..+ +... .+. +|+|+
T Consensus       212 ~~~g~~VLDlg~G--tG~~sl~~a~~-ga~V~avDis~~al~~a~~n~~~ng~~~~~~-~~D~~~~l~~~-~~~-fD~Ii  285 (393)
T 4dmg_A          212 VRPGERVLDVYSY--VGGFALRAARK-GAYALAVDKDLEALGVLDQAALRLGLRVDIR-HGEALPTLRGL-EGP-FHHVL  285 (393)
T ss_dssp             CCTTCEEEEESCT--TTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCCCEEE-ESCHHHHHHTC-CCC-EEEEE
T ss_pred             hcCCCeEEEcccc--hhHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHhCCCCcEE-EccHHHHHHHh-cCC-CCEEE
Confidence            3469999888876  57777777774 888777766665322222333334544 233 334333 3332 333 99987


Q ss_pred             ecCCC----------------chHHHHHHhcccCcEEEEEe
Q psy2961          86 NCVGG----------------NSATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        86 d~~g~----------------~~~~~~~~~l~~~G~~v~~g  110 (202)
                      -....                .....++++|+|+|.++.+.
T Consensus       286 ~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s  326 (393)
T 4dmg_A          286 LDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSS  326 (393)
T ss_dssp             ECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            53221                11223578999999998765

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=96.80  E-value=0.0016  Score=49.94  Aligned_cols=75  Identities=12%  Similarity=0.068  Sum_probs=48.4

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCC-----CcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCC-CeE
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWG-----LKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPK-PKL   83 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g-----~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~-~d~   83 (202)
                      +.+|||+|++|.+|..+++.+...|     .+|++++++.+.    .. ....+...+. |-.+...+.+...+.+ +|+
T Consensus         1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~----~~-~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~d~   75 (364)
T 2v6g_A            1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRP----AW-HEDNPINYVQCDISDPDDSQAKLSPLTDVTH   75 (364)
T ss_dssp             CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCC----SC-CCSSCCEEEECCTTSHHHHHHHHTTCTTCCE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCc----cc-cccCceEEEEeecCCHHHHHHHHhcCCCCCE
Confidence            3589999999999999999888889     899998887653    11 1112233222 3222222333333223 999


Q ss_pred             EEecCCC
Q psy2961          84 ALNCVGG   90 (202)
Q Consensus        84 vid~~g~   90 (202)
                      ||.+++.
T Consensus        76 vih~a~~   82 (364)
T 2v6g_A           76 VFYVTWA   82 (364)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999874

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=96.80  E-value=0.0024  Score=48.92  Aligned_cols=36  Identities=19%  Similarity=0.390  Sum_probs=30.4

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCC-CcEEEEecCcc
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWG-LKTINIVRNRD   46 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g-~~vi~~~~~~~   46 (202)
                      +.+|||+|++|.+|..+++.+...| .+|+++.++++
T Consensus        46 ~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~   82 (357)
T 2x6t_A           46 GRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKD   82 (357)
T ss_dssp             --CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCC
Confidence            5689999999999999999888889 88888887654

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=96.80  E-value=0.0076  Score=46.23  Aligned_cols=88  Identities=18%  Similarity=0.187  Sum_probs=55.6

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHH-HCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhCCCCCeEEEe
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIAR-HWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALN   86 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~-~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~~~~~d~vid   86 (202)
                      -.|.+|.|.|.| .+|..+++.++ ..|.+|++..++.+.    .+...++|...+   .++.+ +      ...|+|+-
T Consensus       161 l~g~~vgIIG~G-~IG~~vA~~l~~~~G~~V~~~d~~~~~----~~~~~~~g~~~~---~~l~ell------~~aDvVil  226 (348)
T 2w2k_A          161 PRGHVLGAVGLG-AIQKEIARKAVHGLGMKLVYYDVAPAD----AETEKALGAERV---DSLEELA------RRSDCVSV  226 (348)
T ss_dssp             STTCEEEEECCS-HHHHHHHHHHHHTTCCEEEEECSSCCC----HHHHHHHTCEEC---SSHHHHH------HHCSEEEE
T ss_pred             CCCCEEEEEEEC-HHHHHHHHHHHHhcCCEEEEECCCCcc----hhhHhhcCcEEe---CCHHHHh------ccCCEEEE
Confidence            467899999998 99999999999 999998887766543    333444555432   12222 2      13466666


Q ss_pred             cCCCch-H-----HHHHHhcccCcEEEEEe
Q psy2961          87 CVGGNS-A-----TNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        87 ~~g~~~-~-----~~~~~~l~~~G~~v~~g  110 (202)
                      ++.... +     ...+..|+++..++.++
T Consensus       227 ~vp~~~~t~~li~~~~l~~mk~gailin~s  256 (348)
T 2w2k_A          227 SVPYMKLTHHLIDEAFFAAMKPGSRIVNTA  256 (348)
T ss_dssp             CCCCSGGGTTCBCHHHHHHSCTTEEEEECS
T ss_pred             eCCCChHHHHHhhHHHHhcCCCCCEEEECC
Confidence            664321 1     12455666666666554

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=96.79  E-value=0.01  Score=45.19  Aligned_cols=86  Identities=14%  Similarity=0.260  Sum_probs=58.4

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhCCCCCeEEEec
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNC   87 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~~~~~d~vid~   87 (202)
                      -.|.+|.|.|.| .+|..+++.++..|.+|++..++.+    + +.+.++|... .   ++.+ +      ...|+|+-+
T Consensus       148 l~g~~vgIIG~G-~iG~~iA~~l~~~G~~V~~~d~~~~----~-~~~~~~g~~~-~---~l~~~l------~~aDvVil~  211 (334)
T 2dbq_A          148 VYGKTIGIIGLG-RIGQAIAKRAKGFNMRILYYSRTRK----E-EVERELNAEF-K---PLEDLL------RESDFVVLA  211 (334)
T ss_dssp             CTTCEEEEECCS-HHHHHHHHHHHHTTCEEEEECSSCC----H-HHHHHHCCEE-C---CHHHHH------HHCSEEEEC
T ss_pred             CCCCEEEEEccC-HHHHHHHHHHHhCCCEEEEECCCcc----h-hhHhhcCccc-C---CHHHHH------hhCCEEEEC
Confidence            467899999998 9999999999999999888777665    2 3444556532 1   2222 2      234788777


Q ss_pred             CCCch-H-----HHHHHhcccCcEEEEEe
Q psy2961          88 VGGNS-A-----TNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        88 ~g~~~-~-----~~~~~~l~~~G~~v~~g  110 (202)
                      +.... +     ...+..|+++..++.++
T Consensus       212 vp~~~~t~~~i~~~~~~~mk~~ailIn~s  240 (334)
T 2dbq_A          212 VPLTRETYHLINEERLKLMKKTAILINIA  240 (334)
T ss_dssp             CCCCTTTTTCBCHHHHHHSCTTCEEEECS
T ss_pred             CCCChHHHHhhCHHHHhcCCCCcEEEECC
Confidence            75432 1     13566777877777765

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=96.77  E-value=0.033  Score=42.77  Aligned_cols=87  Identities=13%  Similarity=0.087  Sum_probs=58.4

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHC-CCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhCCCCCeEEEecCC
Q psy2961          12 DVVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNCVG   89 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~-g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~~~~~d~vid~~g   89 (202)
                      -+|.|.|.| .+|...+..++.. +++++++++....   +.+.++++|...   +.++.+ +.    ...+|+|+.|+.
T Consensus         6 ~~vgiiG~G-~~g~~~~~~l~~~~~~~l~av~d~~~~---~~~~a~~~g~~~---~~~~~~ll~----~~~~D~V~i~tp   74 (359)
T 3e18_A            6 YQLVIVGYG-GMGSYHVTLASAADNLEVHGVFDILAE---KREAAAQKGLKI---YESYEAVLA----DEKVDAVLIATP   74 (359)
T ss_dssp             EEEEEECCS-HHHHHHHHHHHTSTTEEEEEEECSSHH---HHHHHHTTTCCB---CSCHHHHHH----CTTCCEEEECSC
T ss_pred             CcEEEECcC-HHHHHHHHHHHhCCCcEEEEEEcCCHH---HHHHHHhcCCce---eCCHHHHhc----CCCCCEEEEcCC
Confidence            478999998 8998877776665 7788888877653   455666777643   234434 32    257999999998


Q ss_pred             CchHHH-HHHhcccCcEEEEEe
Q psy2961          90 GNSATN-LLRTLVSKGVMVTYG  110 (202)
Q Consensus        90 ~~~~~~-~~~~l~~~G~~v~~g  110 (202)
                      ...-.. +..++..|-. |++-
T Consensus        75 ~~~h~~~~~~al~aGkh-Vl~E   95 (359)
T 3e18_A           75 NDSHKELAISALEAGKH-VVCE   95 (359)
T ss_dssp             GGGHHHHHHHHHHTTCE-EEEE
T ss_pred             cHHHHHHHHHHHHCCCC-EEee
Confidence            765444 5667765544 4443

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=96.75  E-value=0.0026  Score=47.44  Aligned_cols=79  Identities=9%  Similarity=0.095  Sum_probs=57.1

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCV   88 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~   88 (202)
                      -.|.+|+|.|.++.+|..+++++...|++|+++.+....    .+               +.+   .+  ..+|+||.++
T Consensus       163 l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~~----l~---------------l~~---~~--~~ADIVI~Av  218 (300)
T 4a26_A          163 MAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTST----ED---------------MID---YL--RTADIVIAAM  218 (300)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSCH----HH---------------HHH---HH--HTCSEEEECS
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCCC----ch---------------hhh---hh--ccCCEEEECC
Confidence            478999999999779999999999999987666542221    11               001   11  4679999999


Q ss_pred             CCchHHHHHHhcccCcEEEEEecc
Q psy2961          89 GGNSATNLLRTLVSKGVMVTYGGM  112 (202)
Q Consensus        89 g~~~~~~~~~~l~~~G~~v~~g~~  112 (202)
                      |.+.+. --++++++..++.+|..
T Consensus       219 g~p~~I-~~~~vk~GavVIDvgi~  241 (300)
T 4a26_A          219 GQPGYV-KGEWIKEGAAVVDVGTT  241 (300)
T ss_dssp             CCTTCB-CGGGSCTTCEEEECCCE
T ss_pred             CCCCCC-cHHhcCCCcEEEEEecc
Confidence            987542 23567999999999854

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=96.74  E-value=0.0048  Score=46.02  Aligned_cols=74  Identities=11%  Similarity=0.046  Sum_probs=45.9

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCC-CcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCC---CCCeEEEecC
Q psy2961          13 VVIQNGANSACGQNVIQIARHWG-LKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASI---PKPKLALNCV   88 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g-~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~---~~~d~vid~~   88 (202)
                      +|||+|++|.+|..+++.+...| .+|+++.++++..  +...+....  ...|-.+...+.+...+   .++|+||.++
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~--~~~~~~~~~--~~~d~~~~~~~~~~~~~~~~~~~d~vi~~a   76 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGT--KFVNLVDLN--IADYMDKEDFLIQIMAGEEFGDVEAIFHEG   76 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGG--GGHHHHTSC--CSEEEEHHHHHHHHHTTCCCSSCCEEEECC
T ss_pred             CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccCCCCc--hhhhcCcce--eccccccHHHHHHHHhccccCCCcEEEECc
Confidence            48999999999999999888889 8888888766531  112222221  11121221113333322   2699999998


Q ss_pred             CC
Q psy2961          89 GG   90 (202)
Q Consensus        89 g~   90 (202)
                      +.
T Consensus        77 ~~   78 (310)
T 1eq2_A           77 AC   78 (310)
T ss_dssp             SC
T ss_pred             cc
Confidence            74

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=96.74  E-value=0.0015  Score=48.47  Aligned_cols=88  Identities=9%  Similarity=0.044  Sum_probs=53.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcccHHHHHHHHHhcCCc-eEeChhHHHhHHHhhCCCCCeEEEec
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGAD-YVFTEEELRNISRDASIPKPKLALNC   87 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~-~v~~~~~~~~~~~~~~~~~~d~vid~   87 (202)
                      .|.+++|+|+| ++|.+++..+...|+ +++++.++.++       ++++-.. .....+++.+   ..  .++|+||+|
T Consensus       116 ~~k~vlvlGaG-g~g~aia~~L~~~G~~~v~v~~R~~~~-------a~~la~~~~~~~~~~~~~---~~--~~aDiVIna  182 (277)
T 3don_A          116 EDAYILILGAG-GASKGIANELYKIVRPTLTVANRTMSR-------FNNWSLNINKINLSHAES---HL--DEFDIIINT  182 (277)
T ss_dssp             GGCCEEEECCS-HHHHHHHHHHHTTCCSCCEEECSCGGG-------GTTCCSCCEEECHHHHHH---TG--GGCSEEEEC
T ss_pred             CCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCHHH-------HHHHHHhcccccHhhHHH---Hh--cCCCEEEEC
Confidence            57899999997 899999999999999 66666665542       2222111 1223333332   11  457999999


Q ss_pred             CCCchHHH-----HHHhcccCcEEEEEe
Q psy2961          88 VGGNSATN-----LLRTLVSKGVMVTYG  110 (202)
Q Consensus        88 ~g~~~~~~-----~~~~l~~~G~~v~~g  110 (202)
                      ++......     ....++++..++.+.
T Consensus       183 Tp~Gm~~~~~~~l~~~~l~~~~~V~D~v  210 (277)
T 3don_A          183 TPAGMNGNTDSVISLNRLASHTLVSDIV  210 (277)
T ss_dssp             CC-------CCSSCCTTCCSSCEEEESC
T ss_pred             ccCCCCCCCcCCCCHHHcCCCCEEEEec
Confidence            86432111     134567777777765

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=96.74  E-value=0.073  Score=40.26  Aligned_cols=85  Identities=8%  Similarity=0.076  Sum_probs=55.3

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHC-CCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhCCCCCeEEEecCCC
Q psy2961          13 VVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNCVGG   90 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~-g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~~~~~d~vid~~g~   90 (202)
                      +|.|.|+| .+|...+..++.. +++++++++....  ...+..+.+|.. .   .++.+ +.    ...+|+|+.|+..
T Consensus         5 ~vgiiG~G-~~g~~~~~~l~~~~~~~l~av~d~~~~--~~~~~~~~~~~~-~---~~~~~~l~----~~~~D~V~i~tp~   73 (331)
T 4hkt_A            5 RFGLLGAG-RIGKVHAKAVSGNADARLVAVADAFPA--AAEAIAGAYGCE-V---RTIDAIEA----AADIDAVVICTPT   73 (331)
T ss_dssp             EEEEECCS-HHHHHHHHHHHHCTTEEEEEEECSSHH--HHHHHHHHTTCE-E---CCHHHHHH----CTTCCEEEECSCG
T ss_pred             EEEEECCC-HHHHHHHHHHhhCCCcEEEEEECCCHH--HHHHHHHHhCCC-c---CCHHHHhc----CCCCCEEEEeCCc
Confidence            68899998 8998877766654 7888888877643  123344567766 2   33333 32    2578999999987


Q ss_pred             chHHH-HHHhcccCcEEEEE
Q psy2961          91 NSATN-LLRTLVSKGVMVTY  109 (202)
Q Consensus        91 ~~~~~-~~~~l~~~G~~v~~  109 (202)
                      ..-.. +..++..|-+ |++
T Consensus        74 ~~h~~~~~~al~~gk~-v~~   92 (331)
T 4hkt_A           74 DTHADLIERFARAGKA-IFC   92 (331)
T ss_dssp             GGHHHHHHHHHHTTCE-EEE
T ss_pred             hhHHHHHHHHHHcCCc-EEE
Confidence            65544 5566666544 444

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=96.73  E-value=0.042  Score=42.08  Aligned_cols=89  Identities=10%  Similarity=0.051  Sum_probs=57.8

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHC-CCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecCCC
Q psy2961          12 DVVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGG   90 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~-g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~g~   90 (202)
                      -+|.|.|+| .+|...+...+.. +++++++++....  ...+.++++|...   +.++.++.   ....+|+|+.|+..
T Consensus         6 ~~vgiiG~G-~~g~~~~~~l~~~~~~~lvav~d~~~~--~~~~~~~~~g~~~---~~~~~~~l---~~~~~D~V~i~tp~   76 (354)
T 3db2_A            6 VGVAAIGLG-RWAYVMADAYTKSEKLKLVTCYSRTED--KREKFGKRYNCAG---DATMEALL---AREDVEMVIITVPN   76 (354)
T ss_dssp             EEEEEECCS-HHHHHHHHHHTTCSSEEEEEEECSSHH--HHHHHHHHHTCCC---CSSHHHHH---HCSSCCEEEECSCT
T ss_pred             ceEEEEccC-HHHHHHHHHHHhCCCcEEEEEECCCHH--HHHHHHHHcCCCC---cCCHHHHh---cCCCCCEEEEeCCh
Confidence            479999998 7998877777665 7888888877643  1233445677664   23433321   12579999999987


Q ss_pred             chHHH-HHHhcccCcEEEEEe
Q psy2961          91 NSATN-LLRTLVSKGVMVTYG  110 (202)
Q Consensus        91 ~~~~~-~~~~l~~~G~~v~~g  110 (202)
                      ..-.. +..++..|-+ |++.
T Consensus        77 ~~h~~~~~~al~~gk~-vl~E   96 (354)
T 3db2_A           77 DKHAEVIEQCARSGKH-IYVE   96 (354)
T ss_dssp             TSHHHHHHHHHHTTCE-EEEE
T ss_pred             HHHHHHHHHHHHcCCE-EEEc
Confidence            65444 5666666544 4443

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=96.73  E-value=0.0014  Score=46.23  Aligned_cols=70  Identities=19%  Similarity=0.154  Sum_probs=46.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--cEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCCCeEEEe
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGL--KTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALN   86 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~--~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~vid   86 (202)
                      .+.+|+|+|++|.+|..+++.+...|.  +|++++++++.        ...+...+. |-.+...+.+..    +|+||.
T Consensus         4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~--------~~~~~~~~~~D~~~~~~~~~~~----~d~vi~   71 (215)
T 2a35_A            4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA--------EHPRLDNPVGPLAELLPQLDGS----IDTAFC   71 (215)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC--------CCTTEECCBSCHHHHGGGCCSC----CSEEEE
T ss_pred             CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc--------cCCCceEEeccccCHHHHHHhh----hcEEEE
Confidence            357899999999999999999999998  88888877652        111111111 222222233332    899999


Q ss_pred             cCCCc
Q psy2961          87 CVGGN   91 (202)
Q Consensus        87 ~~g~~   91 (202)
                      ++|..
T Consensus        72 ~a~~~   76 (215)
T 2a35_A           72 CLGTT   76 (215)
T ss_dssp             CCCCC
T ss_pred             Ceeec
Confidence            99853

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=96.73  E-value=0.099  Score=39.96  Aligned_cols=88  Identities=13%  Similarity=-0.028  Sum_probs=56.4

Q ss_pred             EEEEeCCCcHHHH-HHHHHHHHC-CCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecCCC
Q psy2961          13 VVIQNGANSACGQ-NVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGG   90 (202)
Q Consensus        13 ~VlI~g~~~~vG~-~~i~la~~~-g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~g~   90 (202)
                      +|.|.|+| .+|. ..+..++.. +++++++++....  ...+.++++|...+-+++   +   ......+|+|+.|+..
T Consensus        29 rigiIG~G-~~g~~~~~~~l~~~~~~~l~av~d~~~~--~~~~~a~~~g~~~~~~~~---~---ll~~~~~D~V~i~tp~   99 (350)
T 3rc1_A           29 RVGVIGCA-DIAWRRALPALEAEPLTEVTAIASRRWD--RAKRFTERFGGEPVEGYP---A---LLERDDVDAVYVPLPA   99 (350)
T ss_dssp             EEEEESCC-HHHHHTHHHHHHHCTTEEEEEEEESSHH--HHHHHHHHHCSEEEESHH---H---HHTCTTCSEEEECCCG
T ss_pred             EEEEEcCc-HHHHHHHHHHHHhCCCeEEEEEEcCCHH--HHHHHHHHcCCCCcCCHH---H---HhcCCCCCEEEECCCc
Confidence            78999998 8997 555555555 7888888876642  123445667876543332   2   2223579999999987


Q ss_pred             chHHH-HHHhcccCcEEEEEe
Q psy2961          91 NSATN-LLRTLVSKGVMVTYG  110 (202)
Q Consensus        91 ~~~~~-~~~~l~~~G~~v~~g  110 (202)
                      ..-.. +..++..|-. |++-
T Consensus       100 ~~h~~~~~~al~aGk~-Vl~E  119 (350)
T 3rc1_A          100 VLHAEWIDRALRAGKH-VLAE  119 (350)
T ss_dssp             GGHHHHHHHHHHTTCE-EEEE
T ss_pred             HHHHHHHHHHHHCCCc-EEEe
Confidence            75544 5566665544 4543

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=96.72  E-value=0.0019  Score=47.85  Aligned_cols=78  Identities=17%  Similarity=0.089  Sum_probs=57.4

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEec
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNC   87 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~   87 (202)
                      --.|.+|+|.|+|..+|.-+++++...|++|+.+.+...                     ++.+   .+  ..+|+||-+
T Consensus       156 ~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~---------------------~L~~---~~--~~ADIVI~A  209 (288)
T 1b0a_A          156 DTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTK---------------------NLRH---HV--ENADLLIVA  209 (288)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCS---------------------CHHH---HH--HHCSEEEEC
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCch---------------------hHHH---Hh--ccCCEEEEC
Confidence            347899999999977899999999999998777653332                     1222   11  346999999


Q ss_pred             CCCchHHHHHHhcccCcEEEEEecc
Q psy2961          88 VGGNSATNLLRTLVSKGVMVTYGGM  112 (202)
Q Consensus        88 ~g~~~~~~~~~~l~~~G~~v~~g~~  112 (202)
                      +|.+.+. --++++++..++.+|..
T Consensus       210 vg~p~lI-~~~~vk~GavVIDVgi~  233 (288)
T 1b0a_A          210 VGKPGFI-PGDWIKEGAIVIDVGIN  233 (288)
T ss_dssp             SCCTTCB-CTTTSCTTCEEEECCCE
T ss_pred             CCCcCcC-CHHHcCCCcEEEEccCC
Confidence            9988642 23457899999999854

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=96.72  E-value=0.0057  Score=44.88  Aligned_cols=103  Identities=13%  Similarity=0.208  Sum_probs=62.6

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCc--eEeChhHHHhHHHhhCCCCC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD--YVFTEEELRNISRDASIPKP   81 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~--~v~~~~~~~~~~~~~~~~~~   81 (202)
                      +...+.++.+||-.|+|  .|..+..+++..+.+++++..+++......+.++..|..  ..+...|..++  ......+
T Consensus        55 ~~~~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~f  130 (273)
T 3bus_A           55 ALLDVRSGDRVLDVGCG--IGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDL--PFEDASF  130 (273)
T ss_dssp             HHSCCCTTCEEEEESCT--TSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC--CSCTTCE
T ss_pred             HhcCCCCCCEEEEeCCC--CCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccC--CCCCCCc
Confidence            34567899999999987  488888999888999999887776433223333334432  11111111110  0123568


Q ss_pred             eEEEecCC-----Cc--hHHHHHHhcccCcEEEEEe
Q psy2961          82 KLALNCVG-----GN--SATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        82 d~vid~~g-----~~--~~~~~~~~l~~~G~~v~~g  110 (202)
                      |+|+....     ..  .+..+.++|+|+|+++...
T Consensus       131 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~  166 (273)
T 3bus_A          131 DAVWALESLHHMPDRGRALREMARVLRPGGTVAIAD  166 (273)
T ss_dssp             EEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             cEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEE
Confidence            99975332     11  1233678999999998765

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=96.72  E-value=0.0059  Score=45.43  Aligned_cols=100  Identities=15%  Similarity=0.068  Sum_probs=62.5

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCc---eEeChhHHHhHHHhhCCCCCeE
Q psy2961           7 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD---YVFTEEELRNISRDASIPKPKL   83 (202)
Q Consensus         7 ~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~---~v~~~~~~~~~~~~~~~~~~d~   83 (202)
                      .+.++.+||-.|+|  .|..+..+++..|++++++.-++.......+.++..|..   .++ ..+..++  ......+|+
T Consensus        79 ~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~-~~d~~~~--~~~~~~fD~  153 (297)
T 2o57_A           79 VLQRQAKGLDLGAG--YGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVK-YGSFLEI--PCEDNSYDF  153 (297)
T ss_dssp             CCCTTCEEEEETCT--TSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEE-ECCTTSC--SSCTTCEEE
T ss_pred             CCCCCCEEEEeCCC--CCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEE-EcCcccC--CCCCCCEeE
Confidence            67899999999987  588888888887888888887766432223333334432   111 1111110  012356899


Q ss_pred             EEecCCCc-------hHHHHHHhcccCcEEEEEec
Q psy2961          84 ALNCVGGN-------SATNLLRTLVSKGVMVTYGG  111 (202)
Q Consensus        84 vid~~g~~-------~~~~~~~~l~~~G~~v~~g~  111 (202)
                      |+....-.       .+..+.+.|+|||+++....
T Consensus       154 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  188 (297)
T 2o57_A          154 IWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDP  188 (297)
T ss_dssp             EEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence            98654321       13347789999999998753

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=96.72  E-value=0.0039  Score=45.81  Aligned_cols=97  Identities=16%  Similarity=0.239  Sum_probs=59.5

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHC---CCcEEEEecCcccHHHHHHHHHhcCCceEeC--hhHHHhHHHhhCCCCCe
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHW---GLKTINIVRNRDDIDKLKSYLKSLGADYVFT--EEELRNISRDASIPKPK   82 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~---g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~--~~~~~~~~~~~~~~~~d   82 (202)
                      +++|.+||=+|+|  .|..+..+++..   |++++++.-+++.++..++.+++.+...-+.  ..|.   .+ ..-..+|
T Consensus        68 ~~~~~~vLDlGcG--tG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~---~~-~~~~~~d  141 (261)
T 4gek_A           68 VQPGTQVYDLGCS--LGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDI---RD-IAIENAS  141 (261)
T ss_dssp             CCTTCEEEEETCT--TTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCT---TT-CCCCSEE
T ss_pred             CCCCCEEEEEeCC--CCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccc---cc-ccccccc
Confidence            6899999999997  477788888864   6789998877764333333444444321110  1121   11 1124688


Q ss_pred             EEEecCCCc---------hHHHHHHhcccCcEEEEEe
Q psy2961          83 LALNCVGGN---------SATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        83 ~vid~~g~~---------~~~~~~~~l~~~G~~v~~g  110 (202)
                      +|+-...-.         .+.++.+.|+|||.++..-
T Consensus       142 ~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e  178 (261)
T 4gek_A          142 MVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE  178 (261)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEe
Confidence            887643311         1234678999999998754

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=96.71  E-value=0.0041  Score=48.30  Aligned_cols=38  Identities=13%  Similarity=0.094  Sum_probs=30.4

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCc
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR   45 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~   45 (202)
                      ...+.+|||+|++|.+|..+++.+...|++|+++.+..
T Consensus         8 ~~~~~~vlVTG~tGfIG~~l~~~L~~~G~~V~~~~r~~   45 (404)
T 1i24_A            8 HHHGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLV   45 (404)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCH
T ss_pred             ccCCCeEEEeCCCcHHHHHHHHHHHhCCCeEEEEEecC
Confidence            45788999999999999999988888899999887643

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=96.71  E-value=0.01  Score=45.22  Aligned_cols=85  Identities=20%  Similarity=0.217  Sum_probs=58.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhCCCCCeEEEecC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNCV   88 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~~~~~d~vid~~   88 (202)
                      .|.+|.|.|.| .+|...++.++.+|++|++..++.+.    .  +++. ... .  .++.+ +      ...|+|+.++
T Consensus       145 ~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~d~~~~~----~--~~~~-~~~-~--~~l~ell------~~aDvV~l~~  207 (333)
T 1j4a_A          145 RDQVVGVVGTG-HIGQVFMQIMEGFGAKVITYDIFRNP----E--LEKK-GYY-V--DSLDDLY------KQADVISLHV  207 (333)
T ss_dssp             GGSEEEEECCS-HHHHHHHHHHHHTTCEEEEECSSCCH----H--HHHT-TCB-C--SCHHHHH------HHCSEEEECS
T ss_pred             CCCEEEEEccC-HHHHHHHHHHHHCCCEEEEECCCcch----h--HHhh-Cee-c--CCHHHHH------hhCCEEEEcC
Confidence            57899999998 99999999999999999888776652    1  2332 322 1  12333 3      2458888877


Q ss_pred             CCch-H-----HHHHHhcccCcEEEEEec
Q psy2961          89 GGNS-A-----TNLLRTLVSKGVMVTYGG  111 (202)
Q Consensus        89 g~~~-~-----~~~~~~l~~~G~~v~~g~  111 (202)
                      .... +     ...+..|++++.++.++.
T Consensus       208 p~~~~t~~li~~~~l~~mk~ga~lIn~ar  236 (333)
T 1j4a_A          208 PDVPANVHMINDESIAKMKQDVVIVNVSR  236 (333)
T ss_dssp             CCCGGGTTCBSHHHHHHSCTTEEEEECSC
T ss_pred             CCcHHHHHHHhHHHHhhCCCCcEEEECCC
Confidence            6432 1     236778889888888763

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=96.71  E-value=0.0049  Score=45.59  Aligned_cols=92  Identities=12%  Similarity=0.185  Sum_probs=58.5

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCCCeEEEecCC
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNCVG   89 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~vid~~g   89 (202)
                      +.+|||+|+ |.+|..+++.+...|.+|+++.++.+.    .    ..+...+. |-.+...+.+... ..+|+||.+++
T Consensus         3 ~~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~----~----~~~~~~~~~Dl~d~~~~~~~~~-~~~d~vih~a~   72 (286)
T 3gpi_A            3 LSKILIAGC-GDLGLELARRLTAQGHEVTGLRRSAQP----M----PAGVQTLIADVTRPDTLASIVH-LRPEILVYCVA   72 (286)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHHTTCCEEEEECTTSC----C----CTTCCEEECCTTCGGGCTTGGG-GCCSEEEECHH
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCccc----c----ccCCceEEccCCChHHHHHhhc-CCCCEEEEeCC
Confidence            358999995 799999999999999999999988753    1    12333332 2222222333332 25999999886


Q ss_pred             Cch-------------HHHHHHhcccC--cEEEEEecc
Q psy2961          90 GNS-------------ATNLLRTLVSK--GVMVTYGGM  112 (202)
Q Consensus        90 ~~~-------------~~~~~~~l~~~--G~~v~~g~~  112 (202)
                      ...             ...+++.++..  +++|.+++.
T Consensus        73 ~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~~v~~SS~  110 (286)
T 3gpi_A           73 ASEYSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSST  110 (286)
T ss_dssp             HHHHC-----CCSHHHHHHHHHHTTTSCCCEEEEEEEG
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEccc
Confidence            321             22355555533  588887753

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=96.71  E-value=0.0037  Score=46.18  Aligned_cols=102  Identities=14%  Similarity=0.115  Sum_probs=62.0

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHC--CCcEEEEecCcccHHHHHHHHHhc-CCceEe-ChhHHHhHHHhhCCC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSL-GADYVF-TEEELRNISRDASIP   79 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~--g~~vi~~~~~~~~~~~~~~~~~~l-g~~~v~-~~~~~~~~~~~~~~~   79 (202)
                      +...++++++||-.|+|  .|..+..+++..  +.+++++..+++..+...+.++.. |.+.+. ...|.   .+.....
T Consensus       104 ~~~~~~~~~~VLD~G~G--~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~---~~~~~~~  178 (275)
T 1yb2_A          104 MRCGLRPGMDILEVGVG--SGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDI---ADFISDQ  178 (275)
T ss_dssp             --CCCCTTCEEEEECCT--TSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCT---TTCCCSC
T ss_pred             HHcCCCCcCEEEEecCC--CCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECch---hccCcCC
Confidence            34567899999999987  577888888873  567777776665322222333334 533221 11121   1122235


Q ss_pred             CCeEEEecCCCc--hHHHHHHhcccCcEEEEEe
Q psy2961          80 KPKLALNCVGGN--SATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        80 ~~d~vid~~g~~--~~~~~~~~l~~~G~~v~~g  110 (202)
                      .+|+|+-....+  .+..+.+.|+++|.++...
T Consensus       179 ~fD~Vi~~~~~~~~~l~~~~~~LkpgG~l~i~~  211 (275)
T 1yb2_A          179 MYDAVIADIPDPWNHVQKIASMMKPGSVATFYL  211 (275)
T ss_dssp             CEEEEEECCSCGGGSHHHHHHTEEEEEEEEEEE
T ss_pred             CccEEEEcCcCHHHHHHHHHHHcCCCCEEEEEe
Confidence            699998755443  2344788999999999875

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=96.70  E-value=0.0018  Score=49.88  Aligned_cols=35  Identities=20%  Similarity=0.303  Sum_probs=31.3

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      .+|||+|++|.+|..+++.+...|++|++++++++
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   59 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSS   59 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCCEEEEEECCcc
Confidence            57999999999999999988889999999987754

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=96.70  E-value=0.0054  Score=46.67  Aligned_cols=86  Identities=17%  Similarity=0.146  Sum_probs=57.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhCCCCCeEEEecC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNCV   88 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~~~~~d~vid~~   88 (202)
                      .|.+|.|.|.| .+|..+++.++.+|++|++..++...    .+...++|....    ++.+ +      ...|+|+-++
T Consensus       144 ~g~tvGIIG~G-~IG~~vA~~l~~~G~~V~~~d~~~~~----~~~~~~~g~~~~----~l~ell------~~aDvV~l~~  208 (330)
T 4e5n_A          144 DNATVGFLGMG-AIGLAMADRLQGWGATLQYHEAKALD----TQTEQRLGLRQV----ACSELF------ASSDFILLAL  208 (330)
T ss_dssp             TTCEEEEECCS-HHHHHHHHHTTTSCCEEEEECSSCCC----HHHHHHHTEEEC----CHHHHH------HHCSEEEECC
T ss_pred             CCCEEEEEeeC-HHHHHHHHHHHHCCCEEEEECCCCCc----HhHHHhcCceeC----CHHHHH------hhCCEEEEcC
Confidence            58899999999 99999999999999999888776532    344455565321    2222 2      2346777666


Q ss_pred             CCc-h----H-HHHHHhcccCcEEEEEe
Q psy2961          89 GGN-S----A-TNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        89 g~~-~----~-~~~~~~l~~~G~~v~~g  110 (202)
                      ... .    . ...+..|++++.++.++
T Consensus       209 P~t~~t~~li~~~~l~~mk~gailIN~a  236 (330)
T 4e5n_A          209 PLNADTLHLVNAELLALVRPGALLVNPC  236 (330)
T ss_dssp             CCSTTTTTCBCHHHHTTSCTTEEEEECS
T ss_pred             CCCHHHHHHhCHHHHhhCCCCcEEEECC
Confidence            421 1    1 23567777777777766

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=96.69  E-value=0.0063  Score=45.29  Aligned_cols=34  Identities=18%  Similarity=0.262  Sum_probs=31.4

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      +|||+||+|-+|..+++.+...|.+|++++++++
T Consensus         2 kILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~   35 (298)
T 4b4o_A            2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPG   35 (298)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            6999999999999999999999999999998764

>2y1e_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase, DOXP/MEP pathway; 1.65A {Mycobacterium tuberculosis} PDB: 2jcv_A* 2jcz_A* 2jd2_A 2jd1_A 2y1d_A* 2y1c_A 2y1f_A* 2y1g_A* 3ras_A* 4a03_A* 4aic_A* 2jcx_A* 2jcy_A 2jd0_A* 2c82_A

Probab=96.69  E-value=0.019  Score=44.06  Aligned_cols=97  Identities=14%  Similarity=0.202  Sum_probs=64.7

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHC--CCcEEEEecCcccHHHHHHHHHhcCCceEe--ChhHH----------Hh-HHHhh
Q psy2961          12 DVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGADYVF--TEEEL----------RN-ISRDA   76 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~--g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~--~~~~~----------~~-~~~~~   76 (202)
                      ++|.|+|++|++|..+..+.+..  .++|++.+......+...++++++.+..+.  +....          .+ +.+..
T Consensus        22 k~i~ILGSTGSIGtqtLdVi~~~pd~f~V~aLaa~g~nv~~L~~q~~~f~p~~v~v~d~~~~~~~~~~v~~G~~~l~~~a  101 (398)
T 2y1e_A           22 LRVVVLGSTGSIGTQALQVIADNPDRFEVVGLAAGGAHLDTLLRQRAQTGVTNIAVADEHAAQRVGDIPYHGSDAATRLV  101 (398)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHCTTTEEEEEEEECSSCHHHHHHHHHHHCCCCEEESCHHHHHHHCCCSEESTTHHHHHH
T ss_pred             eEEEEEccCcHHHHHHHHHHHhCCCceEEEEEEecCCCHHHHHHHHHHcCCCEEEEcCHHHhhhcCCEEEecHHHHHHHh
Confidence            56999999999999999999987  578888887223344567788889887666  32211          11 22222


Q ss_pred             CCCCCeEEEecCCCchHHH-HHHhcccCcEEEE
Q psy2961          77 SIPKPKLALNCVGGNSATN-LLRTLVSKGVMVT  108 (202)
Q Consensus        77 ~~~~~d~vid~~g~~~~~~-~~~~l~~~G~~v~  108 (202)
                      ....+|+|+.++-|..... .+..++.|-++.+
T Consensus       102 ~~~~~D~Vv~AIvG~aGL~PTlaAi~aGK~iaL  134 (398)
T 2y1e_A          102 EQTEADVVLNALVGALGLRPTLAALKTGARLAL  134 (398)
T ss_dssp             HHSCCSEEEECCCSGGGHHHHHHHHHHTCEEEE
T ss_pred             cCCCCCEEEEeCcCHHHHHHHHHHHHCCCceEE
Confidence            2246899999887655433 5666666655544

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=96.68  E-value=0.0047  Score=42.58  Aligned_cols=100  Identities=16%  Similarity=0.047  Sum_probs=60.1

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCce--E-eChhHHHhHHHhhCCCCC
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY--V-FTEEELRNISRDASIPKP   81 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~--v-~~~~~~~~~~~~~~~~~~   81 (202)
                      ....+++++||-.|+|  .|..+..+++. +.+++++.-+++......+.+...+...  + +...+..+   ......+
T Consensus        47 ~~~~~~~~~vLdiG~G--~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~  120 (194)
T 1dus_A           47 NVVVDKDDDILDLGCG--YGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE---NVKDRKY  120 (194)
T ss_dssp             HCCCCTTCEEEEETCT--TSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT---TCTTSCE
T ss_pred             HcccCCCCeEEEeCCC--CCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhc---ccccCCc
Confidence            4456789999999987  47777888887 8888888777653322233333344331  1 11122211   1123579


Q ss_pred             eEEEecCCCc--------hHHHHHHhcccCcEEEEEe
Q psy2961          82 KLALNCVGGN--------SATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        82 d~vid~~g~~--------~~~~~~~~l~~~G~~v~~g  110 (202)
                      |+|+-...-.        .+..+.+.|+++|.++...
T Consensus       121 D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  157 (194)
T 1dus_A          121 NKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVI  157 (194)
T ss_dssp             EEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEE
Confidence            9998654311        1223567899999998875

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=96.68  E-value=0.0021  Score=49.02  Aligned_cols=103  Identities=19%  Similarity=0.241  Sum_probs=59.7

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCC--CcEEEEecCcccHHHHHHHHHhcC-----------CceE-eChhHHH
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWG--LKTINIVRNRDDIDKLKSYLKSLG-----------ADYV-FTEEELR   70 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g--~~vi~~~~~~~~~~~~~~~~~~lg-----------~~~v-~~~~~~~   70 (202)
                      ...+.+|++||-.|+|+  |..++.+++..|  .+++++-.+++..+...+.++.++           ...+ +...|..
T Consensus       100 ~l~~~~g~~VLDiG~G~--G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~  177 (336)
T 2b25_A          100 MMDINPGDTVLEAGSGS--GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDIS  177 (336)
T ss_dssp             HHTCCTTCEEEEECCTT--SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTT
T ss_pred             hcCCCCCCEEEEeCCCc--CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChH
Confidence            34678999999999984  888888888876  577777766653222222233222           0111 1112221


Q ss_pred             h-HHHhhCCCCCeEEEecCCCch--HHHHHHhcccCcEEEEEe
Q psy2961          71 N-ISRDASIPKPKLALNCVGGNS--ATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        71 ~-~~~~~~~~~~d~vid~~g~~~--~~~~~~~l~~~G~~v~~g  110 (202)
                      + ... .....+|+|+-....+.  +..+.++|+|+|+++.+.
T Consensus       178 ~~~~~-~~~~~fD~V~~~~~~~~~~l~~~~~~LkpgG~lv~~~  219 (336)
T 2b25_A          178 GATED-IKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYV  219 (336)
T ss_dssp             CCC--------EEEEEECSSSTTTTHHHHGGGEEEEEEEEEEE
T ss_pred             Hcccc-cCCCCeeEEEECCCCHHHHHHHHHHhcCCCcEEEEEe
Confidence            1 111 11246899886554442  345789999999999765

>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}

Probab=96.68  E-value=0.004  Score=55.90  Aligned_cols=80  Identities=13%  Similarity=0.174  Sum_probs=50.4

Q ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCcEEEEecC-cccHHHHHHHH-Hhc---CCceEe---C---hhHHHh-HHHhh
Q psy2961          10 PGDVVIQNGANSA-CGQNVIQIARHWGLKTINIVRN-RDDIDKLKSYL-KSL---GADYVF---T---EEELRN-ISRDA   76 (202)
Q Consensus        10 ~g~~VlI~g~~~~-vG~~~i~la~~~g~~vi~~~~~-~~~~~~~~~~~-~~l---g~~~v~---~---~~~~~~-~~~~~   76 (202)
                      .|.++||+|++++ +|.++++.+...|++|+.+.++ .+...+..+.+ +++   |....+   |   ..+... +.+..
T Consensus       475 ~GKvALVTGASgGGIGrAIAr~LA~~GA~VVL~~~R~~e~lee~a~eL~ael~a~Ga~V~vV~~DVTD~esVeaLVe~I~  554 (1688)
T 2pff_A          475 KDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIEFIY  554 (1688)
T ss_dssp             CSCCEEECSCSSSSTHHHHHHHHHHHTCEEEEEESSCSTTTTTHHHHTTTTTCCTTCEEEEEECCSSSTTHHHHHHHHHH
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHHCcCEEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCHHHHHHHHHHHH
Confidence            4789999999998 9999999888899999888543 33211112222 222   332211   2   344555 44443


Q ss_pred             CC------C-CCeEEEecCC
Q psy2961          77 SI------P-KPKLALNCVG   89 (202)
Q Consensus        77 ~~------~-~~d~vid~~g   89 (202)
                      ..      + .+|++|+++|
T Consensus       555 e~~~~~GfG~~IDILVNNAG  574 (1688)
T 2pff_A          555 DTEKNGGLGWDLDAIIPFAA  574 (1688)
T ss_dssp             SCTTSSSCCCCCCEEECCCC
T ss_pred             HhccccccCCCCeEEEECCC
Confidence            32      2 6999999987

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=96.67  E-value=0.0049  Score=43.89  Aligned_cols=101  Identities=18%  Similarity=0.192  Sum_probs=59.2

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHC--CCcEEEEecCcccHHHHHHHHHhcCCce-E-eChhHHHh-HHHhh---CC
Q psy2961           7 SLSPGDVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGADY-V-FTEEELRN-ISRDA---SI   78 (202)
Q Consensus         7 ~~~~g~~VlI~g~~~~vG~~~i~la~~~--g~~vi~~~~~~~~~~~~~~~~~~lg~~~-v-~~~~~~~~-~~~~~---~~   78 (202)
                      ...++.+||-.|+|  .|..++.+|+..  +.+++++..+++......+.++..|... + +-..|..+ +....   ..
T Consensus        55 ~~~~~~~vLdiG~G--~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~  132 (221)
T 3u81_A           55 REYSPSLVLELGAY--CGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDV  132 (221)
T ss_dssp             HHHCCSEEEEECCT--TSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCC
T ss_pred             HhcCCCEEEEECCC--CCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCC
Confidence            34578899999987  578888888865  6788888777664333334444455431 1 11123222 22221   12


Q ss_pred             CCCeEEEecCCCchHH---HHH---HhcccCcEEEEE
Q psy2961          79 PKPKLALNCVGGNSAT---NLL---RTLVSKGVMVTY  109 (202)
Q Consensus        79 ~~~d~vid~~g~~~~~---~~~---~~l~~~G~~v~~  109 (202)
                      ..+|+|+-........   ..+   +.|+|||.++.-
T Consensus       133 ~~fD~V~~d~~~~~~~~~~~~~~~~~~LkpgG~lv~~  169 (221)
T 3u81_A          133 DTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLAD  169 (221)
T ss_dssp             CCCSEEEECSCGGGHHHHHHHHHHTTCCCTTCEEEES
T ss_pred             CceEEEEEcCCcccchHHHHHHHhccccCCCeEEEEe
Confidence            5799987544333222   122   689999998764

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=96.67  E-value=0.0091  Score=45.50  Aligned_cols=37  Identities=24%  Similarity=0.240  Sum_probs=32.3

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      -.|.+|.|.|.| .+|...++.++..|.+|++..++.+
T Consensus       144 l~g~~vgIIG~G-~iG~~vA~~l~~~G~~V~~~d~~~~  180 (333)
T 2d0i_A          144 LYGKKVGILGMG-AIGKAIARRLIPFGVKLYYWSRHRK  180 (333)
T ss_dssp             STTCEEEEECCS-HHHHHHHHHHGGGTCEEEEECSSCC
T ss_pred             CCcCEEEEEccC-HHHHHHHHHHHHCCCEEEEECCCcc
Confidence            367899999998 9999999999999999888776665

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=96.67  E-value=0.0039  Score=46.03  Aligned_cols=77  Identities=9%  Similarity=0.090  Sum_probs=56.4

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHC--CCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEe
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALN   86 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~--g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid   86 (202)
                      -.|.+|+|.|+|..+|..+++++...  |++|+.+.+...                     +   +.+.+  ..+|+||-
T Consensus       156 l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t~---------------------~---L~~~~--~~ADIVI~  209 (281)
T 2c2x_A          156 IAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGTR---------------------D---LPALT--RQADIVVA  209 (281)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTCS---------------------C---HHHHH--TTCSEEEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECchh---------------------H---HHHHH--hhCCEEEE
Confidence            47899999999977899999999988  888776543322                     1   12222  56799999


Q ss_pred             cCCCchHHHHHHhcccCcEEEEEecc
Q psy2961          87 CVGGNSATNLLRTLVSKGVMVTYGGM  112 (202)
Q Consensus        87 ~~g~~~~~~~~~~l~~~G~~v~~g~~  112 (202)
                      ++|.+.+. --++++++..++.+|..
T Consensus       210 Avg~p~~I-~~~~vk~GavVIDVgi~  234 (281)
T 2c2x_A          210 AVGVAHLL-TADMVRPGAAVIDVGVS  234 (281)
T ss_dssp             CSCCTTCB-CGGGSCTTCEEEECCEE
T ss_pred             CCCCCccc-CHHHcCCCcEEEEccCC
Confidence            99988642 23457889899988854

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=96.66  E-value=0.011  Score=43.88  Aligned_cols=45  Identities=18%  Similarity=0.105  Sum_probs=34.7

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCc
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD   61 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~   61 (202)
                      .+|.|+|.| .+|...++.+...|.+|++..++++    +.+.+.+.|..
T Consensus         2 ~~i~iIG~G-~mG~~~a~~l~~~G~~V~~~dr~~~----~~~~~~~~g~~   46 (287)
T 3pef_A            2 QKFGFIGLG-IMGSAMAKNLVKAGCSVTIWNRSPE----KAEELAALGAE   46 (287)
T ss_dssp             CEEEEECCS-HHHHHHHHHHHHTTCEEEEECSSGG----GGHHHHHTTCE
T ss_pred             CEEEEEeec-HHHHHHHHHHHHCCCeEEEEcCCHH----HHHHHHHCCCe
Confidence            478999998 9999999998899999887777665    34555555543

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=96.66  E-value=0.02  Score=42.26  Aligned_cols=88  Identities=17%  Similarity=0.115  Sum_probs=56.7

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--cEEEEecCcccHHHHHHHHHhcCCce-EeChhHHHhHHHhhCCC-CCeEEEec
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGL--KTINIVRNRDDIDKLKSYLKSLGADY-VFTEEELRNISRDASIP-KPKLALNC   87 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~--~vi~~~~~~~~~~~~~~~~~~lg~~~-v~~~~~~~~~~~~~~~~-~~d~vid~   87 (202)
                      .+|.|+|+| .+|.+.++.++..|.  +|++..++++    +.+.++++|... ...  +..+   ..  . +.|+||-|
T Consensus         2 ~~I~iIG~G-~mG~~~a~~l~~~g~~~~V~~~d~~~~----~~~~~~~~g~~~~~~~--~~~~---~~--~~~aDvVila   69 (281)
T 2g5c_A            2 QNVLIVGVG-FMGGSFAKSLRRSGFKGKIYGYDINPE----SISKAVDLGIIDEGTT--SIAK---VE--DFSPDFVMLS   69 (281)
T ss_dssp             CEEEEESCS-HHHHHHHHHHHHTTCCSEEEEECSCHH----HHHHHHHTTSCSEEES--CGGG---GG--GTCCSEEEEC
T ss_pred             cEEEEEecC-HHHHHHHHHHHhcCCCcEEEEEeCCHH----HHHHHHHCCCcccccC--CHHH---Hh--cCCCCEEEEc
Confidence            368999987 999999999888887  7766655543    456666777642 221  1111   11  3 67899988


Q ss_pred             CCCchHHH----HHHhcccCcEEEEEec
Q psy2961          88 VGGNSATN----LLRTLVSKGVMVTYGG  111 (202)
Q Consensus        88 ~g~~~~~~----~~~~l~~~G~~v~~g~  111 (202)
                      +.......    +...++++..++.++.
T Consensus        70 vp~~~~~~v~~~l~~~l~~~~iv~~~~~   97 (281)
T 2g5c_A           70 SPVRTFREIAKKLSYILSEDATVTDQGS   97 (281)
T ss_dssp             SCHHHHHHHHHHHHHHSCTTCEEEECCS
T ss_pred             CCHHHHHHHHHHHHhhCCCCcEEEECCC
Confidence            87665443    2345667776666553

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=96.65  E-value=0.0014  Score=49.03  Aligned_cols=34  Identities=9%  Similarity=0.215  Sum_probs=30.9

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      +|||+|++|.+|..+++.+...|++|+++.++.+
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   35 (312)
T 3ko8_A            2 RIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSS   35 (312)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSS
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCC
Confidence            7999999999999999999999999999887665

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=96.65  E-value=0.01  Score=42.50  Aligned_cols=102  Identities=19%  Similarity=0.115  Sum_probs=60.3

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCC--CcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhCCCCC
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWG--LKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKP   81 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g--~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~~~~~   81 (202)
                      ...++++++||-.|+|  .|..+..+++..|  .+++++--+++......+.++....-.++. .|..+ ..-......+
T Consensus        72 ~~~~~~~~~vLDlG~G--~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~-~d~~~~~~~~~~~~~~  148 (233)
T 2ipx_A           72 QIHIKPGAKVLYLGAA--SGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVI-EDARHPHKYRMLIAMV  148 (233)
T ss_dssp             CCCCCTTCEEEEECCT--TSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEEC-SCTTCGGGGGGGCCCE
T ss_pred             eecCCCCCEEEEEccc--CCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEE-cccCChhhhcccCCcE
Confidence            3457889999999987  4888889998864  578877666542222344444431111121 11111 1001112578


Q ss_pred             eEEEecCCCch-----HHHHHHhcccCcEEEEE
Q psy2961          82 KLALNCVGGNS-----ATNLLRTLVSKGVMVTY  109 (202)
Q Consensus        82 d~vid~~g~~~-----~~~~~~~l~~~G~~v~~  109 (202)
                      |+|+.....+.     ...+.+.|+|+|.++..
T Consensus       149 D~V~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~  181 (233)
T 2ipx_A          149 DVIFADVAQPDQTRIVALNAHTFLRNGGHFVIS  181 (233)
T ss_dssp             EEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEcCCCccHHHHHHHHHHHHcCCCeEEEEE
Confidence            99987554432     22367899999999874

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=96.65  E-value=0.0073  Score=47.31  Aligned_cols=94  Identities=20%  Similarity=0.155  Sum_probs=54.5

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC---cEEEEecCcccHHHHHHHHHhcC---CceE-eC---hhHHHh-HHHhhCCCC
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGL---KTINIVRNRDDIDKLKSYLKSLG---ADYV-FT---EEELRN-ISRDASIPK   80 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~---~vi~~~~~~~~~~~~~~~~~~lg---~~~v-~~---~~~~~~-~~~~~~~~~   80 (202)
                      .+|+|+|+| ++|..+++.+...|.   +++++.++.++.++..+.+...+   ...+ +|   ..++.+ +.+.    +
T Consensus         2 ~kVlIiGaG-giG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~----~   76 (405)
T 4ina_A            2 AKVLQIGAG-GVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEV----K   76 (405)
T ss_dssp             CEEEEECCS-HHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHH----C
T ss_pred             CEEEEECCC-HHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhh----C
Confidence            379999995 999999988887773   66666665543211112222211   2222 23   334444 4332    5


Q ss_pred             CeEEEecCCCchHHH-HHHhcccCcEEEEEe
Q psy2961          81 PKLALNCVGGNSATN-LLRTLVSKGVMVTYG  110 (202)
Q Consensus        81 ~d~vid~~g~~~~~~-~~~~l~~~G~~v~~g  110 (202)
                      +|+||+|++...... ...++..+-+++.+.
T Consensus        77 ~DvVin~ag~~~~~~v~~a~l~~g~~vvD~a  107 (405)
T 4ina_A           77 PQIVLNIALPYQDLTIMEACLRTGVPYLDTA  107 (405)
T ss_dssp             CSEEEECSCGGGHHHHHHHHHHHTCCEEESS
T ss_pred             CCEEEECCCcccChHHHHHHHHhCCCEEEec
Confidence            899999998544333 345667777777643

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=96.65  E-value=0.003  Score=46.68  Aligned_cols=59  Identities=15%  Similarity=0.250  Sum_probs=42.8

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhCCCCCeEEEecCCC
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNCVGG   90 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~~~~~d~vid~~g~   90 (202)
                      +|||+|++|.+|..+++.+...|.+|+++++..-+               +.+.+.+.. +...    ++|+||.+++.
T Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~D---------------~~d~~~~~~~~~~~----~~d~vi~~a~~   66 (287)
T 3sc6_A            7 RVIITGANGQLGKQLQEELNPEEYDIYPFDKKLLD---------------ITNISQVQQVVQEI----RPHIIIHCAAY   66 (287)
T ss_dssp             EEEEESTTSHHHHHHHHHSCTTTEEEEEECTTTSC---------------TTCHHHHHHHHHHH----CCSEEEECCCC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEecccccC---------------CCCHHHHHHHHHhc----CCCEEEECCcc
Confidence            79999999999999999988889999988763211               113334433 3322    68999998874

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=96.64  E-value=0.0068  Score=47.85  Aligned_cols=104  Identities=14%  Similarity=0.150  Sum_probs=63.2

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCC-CcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeE
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWG-LKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKL   83 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g-~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~   83 (202)
                      ...+++|++||=.|+|  .|..+.+++...+ .+++++-.++.......+.++.+|....+...|.........+..||.
T Consensus       241 ~l~~~~g~~VLDlgaG--~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~  318 (429)
T 1sqg_A          241 WLAPQNGEHILDLCAA--PGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDR  318 (429)
T ss_dssp             HHCCCTTCEEEEESCT--TCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEE
T ss_pred             HcCCCCcCeEEEECCC--chHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCE
Confidence            3457899999998887  3778888888775 678888777765443444455566532121122211111122357999


Q ss_pred             EEe---cCCCch--------------------------HHHHHHhcccCcEEEEEe
Q psy2961          84 ALN---CVGGNS--------------------------ATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        84 vid---~~g~~~--------------------------~~~~~~~l~~~G~~v~~g  110 (202)
                      |+-   |+|...                          +..++++|+|||+++...
T Consensus       319 Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvyst  374 (429)
T 1sqg_A          319 ILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYAT  374 (429)
T ss_dssp             EEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             EEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            875   444211                          223567899999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	202
d1gu7a2	189	c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yea	1e-24
d1v3va2	182	c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehyd	4e-10
d1vj1a2	187	c.2.1.1 (A:125-311) Putative zinc-binding alcohol	2e-08
d1tt7a2	167	c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bac	4e-08
d1yb5a2	174	c.2.1.1 (A:121-294) Quinone oxidoreductase {Human	2e-07
d1o89a2	177	c.2.1.1 (A:116-292) Hypothetical protein YhdH {Esc	4e-06
d1vj0a2	182	c.2.1.1 (A:156-337) Hypothetical protein TM0436 {T	6e-04

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 189

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

 Score = 93.5 bits (231), Expect = 1e-24
 Identities = 71/173 (41%), Positives = 101/173 (58%), Gaps = 11/173 (6%)

Query: 1   MLKDYNSLSPG-DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG 59
           ML  Y  L+PG D  IQNG  SA G+   QI +     +I+++R+R ++D++ + LK LG
Sbjct: 19  MLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELG 78

Query: 60  ADYVFTEEELRNISRD--------ASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGG 111
           A  V TE++  +             S  + KLALNCVGG S+T + R L + G+M+TYGG
Sbjct: 79  ATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTYGG 138

Query: 112 MSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGK 164
           MS +PV IPTS +IFK+ T  G W+T   K NKE   + S +N++      GK
Sbjct: 139 MSFQPVTIPTSLYIFKNFTSAGFWVTELLKNNKE--LKTSTLNQIIAWYEEGK 189

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

 Score = 54.7 bits (130), Expect = 4e-10
 Identities = 34/169 (20%), Positives = 62/169 (36%), Gaps = 12/169 (7%)

Query: 1   MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
            L +   +  G+ V+ + A  A G  V QIA+  G K +    + + I  LK        
Sbjct: 20  GLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAF 79

Query: 61  DYVFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSRE----- 115
           +Y         + +  S        + VGG     +L  +   G +   G +S       
Sbjct: 80  NYKTVNSLEEALKKA-SPDGYDCYFDNVGGEFLNTVLSQMKDFGKIAICGAISVYNRMDQ 138

Query: 116 -PVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTG 163
            P      + I+K + + G  + RWQ +      R+  + +L + +  G
Sbjct: 139 LPPGPSPESIIYKQLRIEGFIVYRWQGD-----VREKALRDLMKWVLEG 182

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 187

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.6 bits (117), Expect = 2e-08
 Identities = 24/175 (13%), Positives = 63/175 (36%), Gaps = 17/175 (9%)

Query: 1   MLKDYNSLSPG--DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL 58
            +++   +S G    ++ +GA  ACG    QI    G   +  +    +     +     
Sbjct: 19  GVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGF 78

Query: 59  GADYVFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQ 118
            A   +    +    R+A      +  + VGG+ +  ++  +     ++  G +S+    
Sbjct: 79  DAAVNYKTGNVAEQLREACPGGVDVYFDNVGGDISNTVISQMNENSHIILCGQISQYNKD 138

Query: 119 IPT---------SAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGK 164
           +P          +    ++IT     +  ++ + +        + +L++  + GK
Sbjct: 139 VPYPPPLPPAVEAIRKERNITRERFTVLNYKDKFEP------GILQLSQWFKEGK 187

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} Length = 167

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

 Score = 48.8 bits (115), Expect = 4e-08
 Identities = 31/147 (21%), Positives = 55/147 (37%), Gaps = 5/147 (3%)

Query: 2   LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD 61
           L+          V+  GA    G   + +    G   +    NR+  D    YLK LGA 
Sbjct: 15  LEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAAD----YLKQLGAS 70

Query: 62  YVFTEEELRNISRDASIPK-PKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIP 120
            V + E++ + +  A   +  + A++ VGG    +LL  +   G +   G      V   
Sbjct: 71  EVISREDVYDGTLKALSKQQWQGAVDPVGGKQLASLLSKIQYGGSVAVSGLTGGGEVPAT 130

Query: 121 TSAFIFKDITLRGHWMTRWQKENKESA 147
              FI + ++L G        + + + 
Sbjct: 131 VYPFILRGVSLLGIDSVYCPMDVRAAV 157

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 2e-07
 Identities = 27/163 (16%), Positives = 55/163 (33%), Gaps = 8/163 (4%)

Query: 1   MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
            L     +  G+ V+ +GA+   G    QIAR +GLK +      +    +         
Sbjct: 19  ALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVF 78

Query: 61  DYVFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIP 120
           ++      +  I +        + +  +   + +  L  L   G ++  G      ++I 
Sbjct: 79  NH-REVNYIDKIKKYVGEKGIDIIIEMLANVNLSKDLSLLSHGGRVIVVGSRG--TIEIN 135

Query: 121 TSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTG 163
               + K+ ++ G  +    KE     E +     L   M  G
Sbjct: 136 PRDTMAKESSIIGVTLFSSTKE-----EFQQYAAALQAGMEIG 173

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} Length = 177

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

 Score = 43.3 bits (101), Expect = 4e-06
 Identities = 28/149 (18%), Positives = 54/149 (36%), Gaps = 6/149 (4%)

Query: 2   LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD 61
           L+D         ++  GA+   G   + +    G + + +       +    YLKSLGA 
Sbjct: 23  LEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHE----YLKSLGAS 78

Query: 62  YVFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPT 121
            V   +E    SR         A++ VG      +L  +   G +   G      +    
Sbjct: 79  RVLPRDEF-AESRPLEKQVWAGAIDTVGDKVLAKVLAQMNYGGCVAACGLAGGFTLPTTV 137

Query: 122 SAFIFKDITLRG-HWMTRWQKENKESAER 149
             FI +++ L+G   +    +   ++ +R
Sbjct: 138 MPFILRNVRLQGVDSVMTPPERRAQAWQR 166

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.8 bits (84), Expect = 6e-04
 Identities = 25/142 (17%), Positives = 48/142 (33%), Gaps = 7/142 (4%)

Query: 1   MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 60
              +Y     G  V+  GA    G   + IAR  G + + ++    +  KL   + +   
Sbjct: 19  AFDEYPESFAGKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLT 77

Query: 61  DYVFTEEELRNISRDASIPKPKLA---LNCVGGNSATNLLRTLVSKGVMVTYGGMSREPV 117
                            I   + A   L   G + A      L+ +G   +  G++    
Sbjct: 78  LNRRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQD 137

Query: 118 QIPTSAF---IFKDITLRGHWM 136
            +P   +   + K+ T +G W+
Sbjct: 138 PVPFKVYEWLVLKNATFKGIWV 159

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	202
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	99.96
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.96
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.96
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	99.96
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.95
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.95
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.94
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.94
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.93
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	99.92
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.92
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	99.92
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.92
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.91
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	99.91
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.91
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	99.91
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	99.91
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	99.91
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.9
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.9
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.9
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.88
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.88
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.88
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	99.88
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.87
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.87
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	99.41
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	98.6
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	98.58
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	98.58
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	98.58
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	98.55
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	98.55
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	98.54
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	98.54
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	98.53
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	98.53
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	98.52
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	98.51
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	98.49
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	98.48
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.48
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	98.48
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	98.47
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	98.46
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	98.45
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	98.42
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	98.38
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	98.38
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	98.37
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	98.36
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	98.36
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	98.35
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	98.35
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	98.34
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	98.33
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	98.33
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	98.33
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	98.32
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	98.31
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	98.3
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	98.3
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	98.28
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	98.28
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	98.28
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	98.27
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	98.27
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	98.27
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	98.27
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	98.26
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	98.25
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	98.25
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	98.24
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	98.24
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	98.22
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	98.21
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	98.19
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	98.18
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	98.17
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	98.13
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	98.11
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	98.1
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	98.1
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	98.08
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	98.07
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	98.04
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	98.03
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	98.03
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.97
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	97.95
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	97.93
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	97.92
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	97.91
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.88
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	97.87
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.86
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	97.81
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	97.8
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	97.78
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	97.77
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	97.77
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	97.76
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	97.68
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.68
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	97.66
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	97.63
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	97.62
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	97.57
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	97.52
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	97.52
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	97.44
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	97.43
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	97.41
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	97.37
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	97.37
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.36
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	97.32
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	97.3
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	97.26
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	97.22
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.21
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	97.19
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.19
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	97.15
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.15
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	97.11
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	97.1
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	97.09
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	97.07
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	97.07
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	97.06
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	97.06
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	97.05
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	97.05
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	96.98
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	96.97
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	96.97
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	96.94
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	96.94
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.93
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	96.91
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	96.89
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	96.88
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	96.87
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	96.87
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	96.8
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.78
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	96.77
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	96.77
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.72
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	96.7
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	96.66
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	96.66
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.62
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	96.61
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	96.6
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	96.6
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	96.59
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	96.59
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	96.57
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.54
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	96.51
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	96.5
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	96.49
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	96.45
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	96.42
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	96.42
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	96.4
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	96.37
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	96.35
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	96.34
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	96.27
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	96.27
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	96.22
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	96.15
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	96.14
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	96.12
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	96.11
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	96.1
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	96.09
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.08
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	96.06
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.06
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.05
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.04
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.02
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	96.01
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	95.98
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	95.92
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	95.91
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	95.91
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	95.87
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	95.85
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	95.84
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	95.82
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	95.77
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.73
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	95.71
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	95.68
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	95.65
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	95.65
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	95.63
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	95.63
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	95.6
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	95.57
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	95.51
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	95.5
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.5
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	95.44
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	95.41
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.32
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	95.32
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	95.29
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.28
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	95.28
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.26
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	95.25
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.23
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.2
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	95.16
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	95.16
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	95.13
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	95.13
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	95.11
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	95.07
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	95.06
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	95.05
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.04
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	95.01
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.0
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	94.97
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	94.96
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	94.95
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	94.88
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	94.87
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	94.86
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	94.74
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	94.71
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	94.6
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	94.52
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	94.5
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	94.45
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	94.41
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	94.4
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	94.38
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	94.34
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	94.33
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	94.3
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	94.3
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	94.3
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	94.26
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	94.23
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	94.22
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.2
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	94.2
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.14
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.14
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	94.11
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	94.06
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	93.99
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	93.87
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	93.82
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	93.8
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	93.78
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	93.78
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.63
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.55
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	93.52
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	93.47
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	93.31
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	93.25
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	93.18
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.09
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	93.03
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	93.02
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	92.99
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	92.97
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	92.94
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	92.92
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	92.87
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	92.86
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.84
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	92.81
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	92.8
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	92.72
d1jbqa_	355	Cystathionine beta-synthase {Human (Homo sapiens)	92.64
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.61
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	92.59
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	92.58
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	92.52
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	92.5
d1v71a1	318	Hypothetical protein C320.14 (SPCC320.14, SPCC330.	92.47
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	92.32
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	92.2
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	92.14
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	92.1
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	92.08
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	91.91
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	91.82
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	91.76
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	91.75
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	91.7
d1y7la1	310	O-acetylserine sulfhydrylase (Cysteine synthase) {	91.68
d1tdja1	331	Threonine deaminase {Escherichia coli [TaxId: 562]	91.66
d2bhsa1	292	O-acetylserine sulfhydrylase (Cysteine synthase) {	91.64
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	91.62
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	91.52
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	91.48
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	91.48
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	91.46
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	91.39
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	91.38
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	91.36
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	91.32
d1z7wa1	320	O-acetylserine sulfhydrylase (Cysteine synthase) {	91.31
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	91.14
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	91.12
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	91.11
d1wkva1	382	O-acetylserine sulfhydrylase (Cysteine synthase) {	91.01
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	91.0
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	90.93
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	90.8
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	90.8
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	90.74
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	90.65
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	90.42
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	90.42
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	90.3
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	90.27
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	89.99
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	89.87
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	89.85
d1zn7a1	178	Adenine PRTase {Human (Homo sapiens) [TaxId: 9606]	89.78
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	89.64
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	89.38
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	89.28
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	89.24
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	89.24
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	89.18
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	89.14
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	89.13
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	88.89
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	88.72
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	88.68
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	88.61
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	88.56
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	88.54
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	88.44
d1p5ja_	319	L-serine dehydratase {Human (Homo sapiens) [TaxId:	88.19
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	87.99
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	87.83
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	87.67
d1qb7a_	236	Adenine PRTase {Leishmania donovani [TaxId: 5661]}	87.61
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	87.38
d2blna2	203	Polymyxin resistance protein ArnA, N-terminal doma	87.33
d1u0sy_	118	CheY protein {Thermotoga maritima [TaxId: 2336]}	87.28
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	87.25
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	87.22
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	87.17
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	87.11
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	87.03
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	86.97
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	86.79
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	86.77
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	86.62
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	86.5
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	86.42
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	86.4
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	86.39
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	86.36
d1fcja_	302	O-acetylserine sulfhydrylase (Cysteine synthase) {	86.18
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	86.1
d1euca1	130	Succinyl-CoA synthetase, alpha-chain, N-terminal (	86.05
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	85.99
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	85.91
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	85.76
d1g2qa_	178	Adenine PRTase {Baker's yeast (Saccharomyces cerev	85.75
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	85.74
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	85.26
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	85.16
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	84.88
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	84.78
d2csua3	163	Acetate-CoA ligase alpha chain, AcdA, domains 2 an	84.27
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	84.13
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	83.82
d1v7ca_	351	Threonine synthase {Thermus thermophilus [TaxId: 2	83.8
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	83.76
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	83.74
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	83.62
d1e5xa_	477	Threonine synthase {Mouse-ear cress (Arabidopsis t	83.2
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	82.81
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	82.37
d1oi7a1	121	Succinyl-CoA synthetase, alpha-chain, N-terminal (	81.99
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	81.91
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	81.78
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	81.37
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	81.29
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	81.06
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	81.01
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	80.99
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	80.98
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	80.86

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.96  E-value=1.6e-29  Score=177.23  Aligned_cols=161  Identities=19%  Similarity=0.231  Sum_probs=136.8

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeCh--hHHHh-HHHhhCC
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE--EELRN-ISRDASI   78 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~--~~~~~-~~~~~~~   78 (202)
                      |.+.+++++|++|||+|++|++|++++|+|+.+|+++++++++++    +.+.++++|+++++++  +++.+ +++.+++
T Consensus        17 l~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~----~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~   92 (183)
T d1pqwa_          17 LCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDA----KREMLSRLGVEYVGDSRSVDFADEILELTDG   92 (183)
T ss_dssp             HHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHH----HHHHHHTTCCSEEEETTCSTHHHHHHHHTTT
T ss_pred             HHHHhCCCCCCEEEEECCCCCcccccchhhccccccceeeecccc----cccccccccccccccCCccCHHHHHHHHhCC
Confidence            567889999999999999889999999999999999999998875    6899999999999975  45777 9999988


Q ss_pred             CCCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHH
Q psy2961          79 PKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTE  158 (202)
Q Consensus        79 ~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  158 (202)
                      .++|++|||+|++.+..++++|+++|+++.+|.............++.+++++.++.+..+...++  ...++.++++.+
T Consensus        93 ~g~d~v~d~~g~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~  170 (183)
T d1pqwa_          93 YGVDVVLNSLAGEAIQRGVQILAPGGRFIELGKKDVYADASLGLAALAKSASFSVVDLDLNLKLQP--ARYRQLLQHILQ  170 (183)
T ss_dssp             CCEEEEEECCCTHHHHHHHHTEEEEEEEEECSCGGGTTTCEEEGGGGTTTCEEEECCHHHHHHHCH--HHHHHHHHHHHH
T ss_pred             CCEEEEEecccchHHHHHHHHhcCCCEEEEEccCCCCCCcccchHHHhCCcEEEEEEccceeccCH--HHHHHHHHHHHH
Confidence            999999999999888889999999999999986554333223334557899999998777665443  667889999999


Q ss_pred             HHHcCCCCCC
Q psy2961         159 MMRTGKLAAP  168 (202)
Q Consensus       159 ~~~~g~~~~~  168 (202)
                      ++++|+++|.
T Consensus       171 ~i~~G~i~p~  180 (183)
T d1pqwa_         171 HVADGKLEVL  180 (183)
T ss_dssp             HHHTTSSCCC
T ss_pred             HHHCCCCcee
Confidence            9999999985

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.96  E-value=6e-29  Score=174.90  Aligned_cols=161  Identities=41%  Similarity=0.673  Sum_probs=137.8

Q ss_pred             cccccCCCCCCEEEEe-CCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhH-----HHh-HHH
Q psy2961           2 LKDYNSLSPGDVVIQN-GANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE-----LRN-ISR   74 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~-g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~-----~~~-~~~   74 (202)
                      |.+.++++||++|+|+ |++|++|++++|+||.+|++||+++++++..+++.+.++++|+++++++++     +.+ +.+
T Consensus        20 l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~   99 (189)
T d1gu7a2          20 LTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKE   99 (189)
T ss_dssp             HHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHH
T ss_pred             HHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHH
Confidence            6678899999988885 788899999999999999999999998887777888999999999998642     223 444


Q ss_pred             hh--CCCCCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHH
Q psy2961          75 DA--SIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSM  152 (202)
Q Consensus        75 ~~--~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  152 (202)
                      .+  .+.++|++||++|++.+...+++|+++|++|.+|...+.+..++...++.+++++.|+++..|...++  +...+.
T Consensus       100 ~~~~~g~~vdvv~D~vg~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~l~~k~~~i~G~~~~~~~~~~~--~~~~~~  177 (189)
T d1gu7a2         100 WIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWVTELLKNNK--ELKTST  177 (189)
T ss_dssp             HHHHHTCCEEEEEESSCHHHHHHHHHTSCTTCEEEECCCCSSCCEEECHHHHHHSCCEEEECCHHHHHTTCH--HHHHHH
T ss_pred             HHhhccCCceEEEECCCcchhhhhhhhhcCCcEEEEECCccCCCccCcHHHHHHCCcEEEEEEehHhhhhCH--HHHHHH
Confidence            32  35789999999999998889999999999999998777777788888889999999999888776654  677899


Q ss_pred             HHHHHHHHHcCC
Q psy2961         153 MNELTEMMRTGK  164 (202)
Q Consensus       153 ~~~~~~~~~~g~  164 (202)
                      +.++.+++++|+
T Consensus       178 ~~~l~~l~~~Gk  189 (189)
T d1gu7a2         178 LNQIIAWYEEGK  189 (189)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHcCC
Confidence            999999999986

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.96  E-value=7.2e-29  Score=173.57  Aligned_cols=153  Identities=24%  Similarity=0.365  Sum_probs=128.9

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChh--HHHh-HHHhhCC
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRDASI   78 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~--~~~~-~~~~~~~   78 (202)
                      |++.+++++||+|||+|++|++|++++|+|+..|++||+++++++    +.+.++++|+++++++.  ++.+ +.+.+.+
T Consensus        21 l~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~----~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~   96 (182)
T d1v3va2          21 LLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDE----KIAYLKQIGFDAAFNYKTVNSLEEALKKASP   96 (182)
T ss_dssp             HHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHH----HHHHHHHTTCSEEEETTSCSCHHHHHHHHCT
T ss_pred             HHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHH----HHHHHHhhhhhhhcccccccHHHHHHHHhhc
Confidence            678899999999999999999999999999999999999998876    68999999999999753  4455 6777777


Q ss_pred             CCCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCC------CcCCCcccccccCeeEEEEechhHhhhcccHHHHHHH
Q psy2961          79 PKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSRE------PVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSM  152 (202)
Q Consensus        79 ~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  152 (202)
                      .++|+||||+|++.+...+++++++|+++.+|.....      +..+++..++.+++++.|++...|..     +...+.
T Consensus        97 ~Gvd~v~D~vG~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~l~~k~~ti~g~~~~~~~~-----~~~~~~  171 (182)
T d1v3va2          97 DGYDCYFDNVGGEFLNTVLSQMKDFGKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVYRWQG-----DVREKA  171 (182)
T ss_dssp             TCEEEEEESSCHHHHHHHGGGEEEEEEEEECCCGGGTTCTTSCCBCCCHHHHHHTTCEEEECCGGGCCH-----HHHHHH
T ss_pred             CCCceeEEecCchhhhhhhhhccCCCeEEeecceeeccccccCCCCcchHHHhhcCcEEEEEEEeccCh-----HHHHHH
Confidence            8999999999998888899999999999999864332      22344456789999999998776643     455778


Q ss_pred             HHHHHHHHHcC
Q psy2961         153 MNELTEMMRTG  163 (202)
Q Consensus       153 ~~~~~~~~~~g  163 (202)
                      ++++.+++++|
T Consensus       172 ~~~l~~~i~~G  182 (182)
T d1v3va2         172 LRDLMKWVLEG  182 (182)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHhCc
Confidence            99999999876

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.96  E-value=5.2e-29  Score=172.22  Aligned_cols=131  Identities=20%  Similarity=0.271  Sum_probs=113.2

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhCCCC
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPK   80 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~~~~   80 (202)
                      |.+.++.++|++|||+|++|++|.+++|+|+..|++|++++++++    +.+.++++|+++++|+++... ....+.+.+
T Consensus        23 L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~----k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~g   98 (176)
T d1xa0a2          23 LEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAA----EHDYLRVLGAKEVLAREDVMAERIRPLDKQR   98 (176)
T ss_dssp             HHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTT----CHHHHHHTTCSEEEECC---------CCSCC
T ss_pred             HHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchH----HHHHHHhcccceeeecchhHHHHHHHhhccC
Confidence            445688899999999999999999999999999999999999887    589999999999998766545 555667789


Q ss_pred             CeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEec
Q psy2961          81 PKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWM  136 (202)
Q Consensus        81 ~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~  136 (202)
                      +|+|||++|++.+...+++|+++|+++.+|...+...+++...++.|++++.|+..
T Consensus        99 vD~vid~vgg~~~~~~l~~l~~~Griv~~G~~~g~~~~~~~~~~~~k~~~i~Gv~~  154 (176)
T d1xa0a2          99 WAAAVDPVGGRTLATVLSRMRYGGAVAVSGLTGGAEVPTTVHPFILRGVSLLGIDS  154 (176)
T ss_dssp             EEEEEECSTTTTHHHHHHTEEEEEEEEECSCCSSSCCCCCSHHHHHTTCEEEECCS
T ss_pred             cCEEEEcCCchhHHHHHHHhCCCceEEEeecccCcccCCCHHHHHHCCcEEEEEeC
Confidence            99999999999999999999999999999988887788999999999999999754

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.6e-27  Score=165.59  Aligned_cols=151  Identities=19%  Similarity=0.263  Sum_probs=123.2

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeCh--hHHHh-HHHhhCC
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE--EELRN-ISRDASI   78 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~--~~~~~-~~~~~~~   78 (202)
                      |.+.+++++|++|||+|++|++|++++|+|+.+|++||+++++++    +++.++++|++.++|+  .++.+ +++.+++
T Consensus        20 l~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~----~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~   95 (174)
T d1yb5a2          20 LIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEE----GQKIVLQNGAHEVFNHREVNYIDKIKKYVGE   95 (174)
T ss_dssp             HHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHH----HHHHHHHTTCSEEEETTSTTHHHHHHHHHCT
T ss_pred             HHHHhCCCCCCEEEEEeccccccccccccccccCccccccccccc----ccccccccCcccccccccccHHHHhhhhhcc
Confidence            567789999999999999889999999999999999999998765    6899999999999986  45777 8999998


Q ss_pred             CCCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHH
Q psy2961          79 PKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTE  158 (202)
Q Consensus        79 ~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  158 (202)
                      .++|++|||+|++.+..++++++++|+++.+|...  +.++++..++.+++++.|+.++...     ++...+..+.+.+
T Consensus        96 ~g~d~v~d~~g~~~~~~~~~~l~~~G~iv~~G~~~--~~~~~~~~~~~k~~~i~g~~~~~~~-----~~~~~~~~~~l~~  168 (174)
T d1yb5a2          96 KGIDIIIEMLANVNLSKDLSLLSHGGRVIVVGSRG--TIEINPRDTMAKESSIIGVTLFSST-----KEEFQQYAAALQA  168 (174)
T ss_dssp             TCEEEEEESCHHHHHHHHHHHEEEEEEEEECCCCS--CEEECTHHHHTTTCEEEECCGGGCC-----HHHHHHHHHHHHH
T ss_pred             CCceEEeecccHHHHHHHHhccCCCCEEEEEecCC--CCCCCHHHHHHCCCEEEEEEecCCC-----HHHHHHHHHHHHH
Confidence            99999999999887777999999999999998543  3466777788999999998765421     1333444444444


Q ss_pred             HHHcC
Q psy2961         159 MMRTG  163 (202)
Q Consensus       159 ~~~~g  163 (202)
                      .++.|
T Consensus       169 g~~~G  173 (174)
T d1yb5a2         169 GMEIG  173 (174)
T ss_dssp             HHHHT
T ss_pred             HHHcc
Confidence            44444

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.95  E-value=5.6e-28  Score=165.83  Aligned_cols=132  Identities=23%  Similarity=0.316  Sum_probs=117.4

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhCCCC
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPK   80 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~~~~   80 (202)
                      |.+.+..+++++|||+|++|++|.+++|+||.+|++||+++++++    +.+.++++|++.++++++... ....+.+.+
T Consensus        15 L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~----k~~~~~~lGad~vi~~~~~~~~~~~~~~~~g   90 (167)
T d1tt7a2          15 LEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNRE----AADYLKQLGASEVISREDVYDGTLKALSKQQ   90 (167)
T ss_dssp             HHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSS----THHHHHHHTCSEEEEHHHHCSSCCCSSCCCC
T ss_pred             HHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHH----HHHHHHhhcccceEeccchhchhhhcccCCC
Confidence            445666778999999999999999999999999999999999987    589999999999999877665 555566678


Q ss_pred             CeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEech
Q psy2961          81 PKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMT  137 (202)
Q Consensus        81 ~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~  137 (202)
                      +|+|||++|++.+...+++|+++|+++.+|...+...+++...++.+++++.|+...
T Consensus        91 vd~vid~vgg~~~~~~~~~l~~~G~iv~~G~~~g~~~~~~~~~l~~k~~~i~G~~~~  147 (167)
T d1tt7a2          91 WQGAVDPVGGKQLASLLSKIQYGGSVAVSGLTGGGEVPATVYPFILRGVSLLGIDSV  147 (167)
T ss_dssp             EEEEEESCCTHHHHHHHTTEEEEEEEEECCCSSCSCEEECSHHHHTSCCEEEECCSS
T ss_pred             ceEEEecCcHHHHHHHHHHhccCceEEEeeccCCCcccCCHHHHHHCCcEEEEEecC
Confidence            999999999999999999999999999999888877788888999999999997643

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=2.9e-27  Score=163.54  Aligned_cols=146  Identities=23%  Similarity=0.337  Sum_probs=113.7

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeE
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKL   83 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~   83 (202)
                      ++++++||++|||+|++|++|++++|+|+..|++||+++++++    +++.++++|+++++|+.+...  +.+.+.++|+
T Consensus        21 ~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~----~~~~~~~lGa~~~i~~~~~~~--~~~~~~g~D~   94 (171)
T d1iz0a2          21 KRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPE----KLALPLALGAEEAATYAEVPE--RAKAWGGLDL   94 (171)
T ss_dssp             HHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGG----GSHHHHHTTCSEEEEGGGHHH--HHHHTTSEEE
T ss_pred             HHhCCCCCCEEEEEeccccchhhhhhhhccccccccccccccc----ccccccccccceeeehhhhhh--hhhccccccc
Confidence            3578999999999999889999999999999999999998876    578999999999998876543  3344578999


Q ss_pred             EEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHH
Q psy2961          84 ALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEM  159 (202)
Q Consensus        84 vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (202)
                      ||||+| +.+...+++++++|+++.+|...+...+++...++.+++++.|+++..+...   ++...+.+..+..+
T Consensus        95 v~d~~G-~~~~~~~~~l~~~G~~v~~G~~~g~~~~~~~~~~~~k~~~i~g~~~~~~~~~---~~~~~~~~~~l~p~  166 (171)
T d1iz0a2          95 VLEVRG-KEVEESLGLLAHGGRLVYIGAAEGEVAPIPPLRLMRRNLAVLGFWLTPLLRE---GALVEEALGFLLPR  166 (171)
T ss_dssp             EEECSC-TTHHHHHTTEEEEEEEEEC-------CCCCTTHHHHTTCEEEECCHHHHTTC---HHHHHHHHHHHGGG
T ss_pred             cccccc-hhHHHHHHHHhcCCcEEEEeCCCCCCCCccHHHHHHCCcEEEEEeCcChhhh---HHHHHHHHHHHHHH
Confidence            999987 5667799999999999999977666667888889999999999988766442   23444444444433

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=1.3e-26  Score=161.64  Aligned_cols=155  Identities=20%  Similarity=0.249  Sum_probs=126.3

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeCh--hHHHh-HHHhhCC
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE--EELRN-ISRDASI   78 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~--~~~~~-~~~~~~~   78 (202)
                      |++.++++||++|||+|++|++|++++|+|+..|++|++++++++    +++.++++|+++++|+  +++.+ +++.+++
T Consensus        20 l~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~----k~~~~~~lGa~~vi~~~~~d~~~~v~~~t~g   95 (179)
T d1qora2          20 LRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQ----KAQSALKAGAWQVINYREEDLVERLKEITGG   95 (179)
T ss_dssp             HHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHH----HHHHHHHHTCSEEEETTTSCHHHHHHHHTTT
T ss_pred             HHHHhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchH----HHHHHHhcCCeEEEECCCCCHHHHHHHHhCC
Confidence            567889999999999999999999999999999999999998886    6899999999999985  46777 9999999


Q ss_pred             CCCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCccccccc-CeeEEEEechhHhhhcccHHHHHHHHHHHH
Q psy2961          79 PKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFK-DITLRGHWMTRWQKENKESAERKSMMNELT  157 (202)
Q Consensus        79 ~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  157 (202)
                      .++|+++|++|++.+...+.+++++|+++.++.........+...+..+ .+.+....+..+.   ..++...+.+.++.
T Consensus        96 ~g~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~l~  172 (179)
T d1qora2          96 KKVRVVYDSVGRDTWERSLDCLQRRGLMVSFGNSSGAVTGVNLGILNQKGSLYVTRPSLQGYI---TTREELTEASNELF  172 (179)
T ss_dssp             CCEEEEEECSCGGGHHHHHHTEEEEEEEEECCCTTCCCCCBCTHHHHHTTSCEEECCCHHHHC---CSHHHHHHHHHHHH
T ss_pred             CCeEEEEeCccHHHHHHHHHHHhcCCeeeecccccCCccccchhhhhccceEEEEeeEEeeec---CCHHHHHHHHHHHH
Confidence            9999999999999988899999999999999877666555555444333 3333333333332   22366778888999


Q ss_pred             HHHHcC
Q psy2961         158 EMMRTG  163 (202)
Q Consensus       158 ~~~~~g  163 (202)
                      +++++|
T Consensus       173 ~lv~~G  178 (179)
T d1qora2         173 SLIASG  178 (179)
T ss_dssp             HHHHTT
T ss_pred             HHHHCc
Confidence            999887

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.93  E-value=4.7e-26  Score=157.94  Aligned_cols=150  Identities=19%  Similarity=0.204  Sum_probs=124.6

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeCh--hHHHh-HHHhhCC
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE--EELRN-ISRDASI   78 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~--~~~~~-~~~~~~~   78 (202)
                      +.+.++++||++|+|+|+| ++|++++|+|+.+|++++.+++..+.   +++.++++|+++++++  +++.+ +++.+++
T Consensus        20 ~~~~~~~~~g~~VlI~G~G-~iG~~~~~~ak~~g~~~v~~~~~~~~---k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~g   95 (174)
T d1f8fa2          20 CINALKVTPASSFVTWGAG-AVGLSALLAAKVCGASIIIAVDIVES---RLELAKQLGATHVINSKTQDPVAAIKEITDG   95 (174)
T ss_dssp             HHTTTCCCTTCEEEEESCS-HHHHHHHHHHHHHTCSEEEEEESCHH---HHHHHHHHTCSEEEETTTSCHHHHHHHHTTS
T ss_pred             HHHhhCCCCCCEEEEeCCC-HHHhhhhhcccccccceeeeeccHHH---HHHHHHHcCCeEEEeCCCcCHHHHHHHHcCC
Confidence            4567889999999999986 99999999999999988887766543   7899999999999975  45677 8888875


Q ss_pred             CCCeEEEecCCCchHHH-HHHhcccCcEEEEEeccCC-CCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHH
Q psy2961          79 PKPKLALNCVGGNSATN-LLRTLVSKGVMVTYGGMSR-EPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNEL  156 (202)
Q Consensus        79 ~~~d~vid~~g~~~~~~-~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  156 (202)
                       ++|++|||+|.+.... ++++++++|+++.+|.... ...+++...++.+++++.|+...++.        .+++++++
T Consensus        96 -g~D~vid~~G~~~~~~~~~~~~~~~G~i~~~G~~~~~~~~~~~~~~~~~k~~~i~Gs~~g~~~--------~~~~~~~~  166 (174)
T d1f8fa2          96 -GVNFALESTGSPEILKQGVDALGILGKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEGSGS--------PKKFIPEL  166 (174)
T ss_dssp             -CEEEEEECSCCHHHHHHHHHTEEEEEEEEECCCCSTTCCCCCCHHHHHHTTCEEEECSGGGSC--------HHHHHHHH
T ss_pred             -CCcEEEEcCCcHHHHHHHHhcccCceEEEEEeecCCCcccccCHHHHHHCCCEEEEEEecCCC--------hHHHHHHH
Confidence             8999999999887654 7999999999999985443 34577888889999999998765432        24568999


Q ss_pred             HHHHHcCC
Q psy2961         157 TEMMRTGK  164 (202)
Q Consensus       157 ~~~~~~g~  164 (202)
                      ++++++|+
T Consensus       167 ~~l~~~Gk  174 (174)
T d1f8fa2         167 VRLYQQGK  174 (174)
T ss_dssp             HHHHHTTS
T ss_pred             HHHHHcCC
Confidence            99999986

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=2e-25  Score=156.44  Aligned_cols=153  Identities=16%  Similarity=0.274  Sum_probs=114.1

Q ss_pred             cccccCCCCC--CEEEEeCCCcHHHHHHHHHHHHCCCcEEEE-ecCcccHHHHHHHHHhcCCceEeCh--hHHHh-HHHh
Q psy2961           2 LKDYNSLSPG--DVVIQNGANSACGQNVIQIARHWGLKTINI-VRNRDDIDKLKSYLKSLGADYVFTE--EELRN-ISRD   75 (202)
Q Consensus         2 l~~~~~~~~g--~~VlI~g~~~~vG~~~i~la~~~g~~vi~~-~~~~~~~~~~~~~~~~lg~~~v~~~--~~~~~-~~~~   75 (202)
                      |++.+++++|  ++|||+||+|++|++++|+||..|++++++ ++++++   +.+..+++|++.++|+  +++.+ +++.
T Consensus        20 l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~---~~~l~~~~gad~vi~~~~~~~~~~~~~~   96 (187)
T d1vj1a2          20 VQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEK---CLFLTSELGFDAAVNYKTGNVAEQLREA   96 (187)
T ss_dssp             HHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHH---HHHHHHHSCCSEEEETTSSCHHHHHHHH
T ss_pred             HHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHH---HhhhhhcccceEEeeccchhHHHHHHHH
Confidence            5667888887  899999999999999999999999976654 445442   4555678999999986  35666 7777


Q ss_pred             hCCCCCeEEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCC---------cccccccCeeEEEEechhHhhhcccH
Q psy2961          76 ASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIP---------TSAFIFKDITLRGHWMTRWQKENKES  146 (202)
Q Consensus        76 ~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~---------~~~~~~~~~~~~g~~~~~~~~~~~~~  146 (202)
                      ++ .++|+|||++|++.+...+++++++|+++.+|...+.....+         ...+..+++++.|+.+..|..     
T Consensus        97 ~~-~GvDvv~D~vGg~~~~~~~~~l~~~G~iv~~G~~s~~~~~~~~~~~~~~~~~~~~~~k~i~~~g~~~~~~~~-----  170 (187)
T d1vj1a2          97 CP-GGVDVYFDNVGGDISNTVISQMNENSHIILCGQISQYNKDVPYPPPLPPAVEAIRKERNITRERFTVLNYKD-----  170 (187)
T ss_dssp             CT-TCEEEEEESSCHHHHHHHHTTEEEEEEEEEC------------CCCCCHHHHHHHHHTTCEEEECCGGGCGG-----
T ss_pred             hc-cCceEEEecCCchhHHHHhhhccccccEEEeccccccccccccCCchHHHHHHHHHhcceEEEEeEecchHH-----
Confidence            75 789999999999988889999999999999996544221111         112346889999987665432     


Q ss_pred             HHHHHHHHHHHHHHHcCC
Q psy2961         147 AERKSMMNELTEMMRTGK  164 (202)
Q Consensus       147 ~~~~~~~~~~~~~~~~g~  164 (202)
                       ...+.++++.+++.+|+
T Consensus       171 -~~~e~~~~l~~~i~~Gk  187 (187)
T d1vj1a2         171 -KFEPGILQLSQWFKEGK  187 (187)
T ss_dssp             -GHHHHHHHHHHHHHHTS
T ss_pred             -HHHHHHHHHHHHHHCcC
Confidence             34677999999999886

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.92  E-value=6.7e-25  Score=151.64  Aligned_cols=146  Identities=21%  Similarity=0.246  Sum_probs=121.1

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeCh--hHHHh-HHHhhCCCC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE--EELRN-ISRDASIPK   80 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~--~~~~~-~~~~~~~~~   80 (202)
                      ++.++++|++|+|+|++|++|++++|+++..|+..+.+++..+   ++++.++++|++.++++  .++.+ +++.+.+.+
T Consensus        21 ~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~---~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~   97 (170)
T d1jvba2          21 RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE---EAVEAAKRAGADYVINASMQDPLAEIRRITESKG   97 (170)
T ss_dssp             HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH---HHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSC
T ss_pred             HHhCCCCCCEEEEEeccccceeeeeecccccccccccccccch---hhHHHHHHcCCceeeccCCcCHHHHHHHHhhccc
Confidence            4578999999999998889999999999999975444444433   27899999999998864  45666 888888888


Q ss_pred             CeEEEecCCCchHHH-HHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHH
Q psy2961          81 PKLALNCVGGNSATN-LLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEM  159 (202)
Q Consensus        81 ~d~vid~~g~~~~~~-~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (202)
                      +|++|||+|++...+ ++++++++|+++.+|. .+.+.+++...++.+++++.|++.++           ++++++++++
T Consensus        98 ~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~-~~~~~~~~~~~~~~k~i~i~Gs~~~~-----------~~d~~~~l~l  165 (170)
T d1jvba2          98 VDAVIDLNNSEKTLSVYPKALAKQGKYVMVGL-FGADLHYHAPLITLSEIQFVGSLVGN-----------QSDFLGIMRL  165 (170)
T ss_dssp             EEEEEESCCCHHHHTTGGGGEEEEEEEEECCS-SCCCCCCCHHHHHHHTCEEEECCSCC-----------HHHHHHHHHH
T ss_pred             chhhhcccccchHHHhhhhhcccCCEEEEecc-ccCccccCHHHHHhCCcEEEEEecCC-----------HHHHHHHHHH
Confidence            999999999987654 8999999999999984 45567888888999999999988654           4558889999


Q ss_pred             HHcCC
Q psy2961         160 MRTGK  164 (202)
Q Consensus       160 ~~~g~  164 (202)
                      +++||
T Consensus       166 v~~GK  170 (170)
T d1jvba2         166 AEAGK  170 (170)
T ss_dssp             HHTTS
T ss_pred             HHcCC
Confidence            99886

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=1.3e-24  Score=151.71  Aligned_cols=146  Identities=21%  Similarity=0.308  Sum_probs=113.7

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcccHHHHHHHHHhcCCceEeChh-----HHHh-HHH
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTEE-----ELRN-ISR   74 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~-----~~~~-~~~   74 (202)
                      |.+.+++++|++|||+|+| ++|++++|+|++.|+ +|+++..+++    +++.++++|+++++++.     +..+ +.+
T Consensus        20 l~~~~~~~~G~~VlV~GaG-~iG~~~~~~ak~~Ga~~Vi~~~~~~~----~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~   94 (182)
T d1vj0a2          20 FDEYPESFAGKTVVIQGAG-PLGLFGVVIARSLGAENVIVIAGSPN----RLKLAEEIGADLTLNRRETSVEERRKAIMD   94 (182)
T ss_dssp             HHTCSSCCBTCEEEEECCS-HHHHHHHHHHHHTTBSEEEEEESCHH----HHHHHHHTTCSEEEETTTSCHHHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEECCC-ccchhheecccccccccccccccccc----cccccccccceEEEeccccchHHHHHHHHH
Confidence            5677889999999999986 999999999999999 5666666654    78999999999999642     2344 777


Q ss_pred             hhCCCCCeEEEecCCCchHH-HHHHhcccCcEEEEEeccCC-CCcCCCc-ccccccCeeEEEEechhHhhhcccHHHHHH
Q psy2961          75 DASIPKPKLALNCVGGNSAT-NLLRTLVSKGVMVTYGGMSR-EPVQIPT-SAFIFKDITLRGHWMTRWQKENKESAERKS  151 (202)
Q Consensus        75 ~~~~~~~d~vid~~g~~~~~-~~~~~l~~~G~~v~~g~~~~-~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  151 (202)
                      .+.+.++|+||||+|++... .++++++++|+++.+|.... .+.+++. ..++.+++++.|++.++           .+
T Consensus        95 ~~~~~g~Dvvid~vG~~~~~~~a~~~l~~~G~iv~~G~~~~~~~~~~~~~~~l~~k~l~i~G~~~~~-----------~~  163 (182)
T d1vj0a2          95 ITHGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIWVSD-----------TS  163 (182)
T ss_dssp             HTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCSCCCCEEECHHHHTTTTTCEEEECCCCC-----------HH
T ss_pred             hhCCCCceEEeecCCchhHHHHHHHHhcCCCEEEEEeecCCCCccccccHHHHHHCCcEEEEEEeCC-----------HH
Confidence            78888999999999987654 58999999999999985432 2333333 34678999999988764           33


Q ss_pred             HHHHHHHHHHcC
Q psy2961         152 MMNELTEMMRTG  163 (202)
Q Consensus       152 ~~~~~~~~~~~g  163 (202)
                      .+++++++++++
T Consensus       164 ~~~~~~~~i~~~  175 (182)
T d1vj0a2         164 HFVKTVSITSRN  175 (182)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHC
Confidence            466667776653

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=5.2e-25  Score=151.82  Aligned_cols=143  Identities=15%  Similarity=0.180  Sum_probs=117.5

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhCCCCCeE
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKL   83 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~~~~~d~   83 (202)
                      +++++||++|+|+|+| ++|++++|+|+.+|++||+++++++    |++.++++|+++++++.+..+ ....  ..++|+
T Consensus        22 ~~~~~~g~~vlI~GaG-~vG~~a~q~ak~~G~~vi~~~~~~~----k~~~a~~lGa~~~i~~~~~~~~~~~~--~~~~d~   94 (168)
T d1piwa2          22 RNGCGPGKKVGIVGLG-GIGSMGTLISKAMGAETYVISRSSR----KREDAMKMGADHYIATLEEGDWGEKY--FDTFDL   94 (168)
T ss_dssp             HTTCSTTCEEEEECCS-HHHHHHHHHHHHHTCEEEEEESSST----THHHHHHHTCSEEEEGGGTSCHHHHS--CSCEEE
T ss_pred             HhCcCCCCEEEEECCC-CcchhHHHHhhhccccccccccchh----HHHHhhccCCcEEeeccchHHHHHhh--hcccce
Confidence            5789999999999985 9999999999999999999888876    689999999999998654333 3332  257999


Q ss_pred             EEecCCCch---HHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHH
Q psy2961          84 ALNCVGGNS---ATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMM  160 (202)
Q Consensus        84 vid~~g~~~---~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (202)
                      ++||++...   +...+++++++|+++.+|. .+.+..++...++.+++++.|+...+           .++++++++++
T Consensus        95 vi~~~~~~~~~~~~~~~~~l~~~G~iv~~G~-~~~~~~~~~~~~~~k~~~i~Gs~~g~-----------~~~~~e~l~li  162 (168)
T d1piwa2          95 IVVCASSLTDIDFNIMPKAMKVGGRIVSISI-PEQHEMLSLKPYGLKAVSISYSALGS-----------IKELNQLLKLV  162 (168)
T ss_dssp             EEECCSCSTTCCTTTGGGGEEEEEEEEECCC-CCSSCCEEECGGGCBSCEEEECCCCC-----------HHHHHHHHHHH
T ss_pred             EEEEecCCccchHHHHHHHhhccceEEEecc-ccccccccHHHHHhCCcEEEEEeeCC-----------HHHHHHHHHHH
Confidence            999987654   3458899999999999984 44455778888899999999987654           44588999999


Q ss_pred             HcCCCC
Q psy2961         161 RTGKLA  166 (202)
Q Consensus       161 ~~g~~~  166 (202)
                      ++|+++
T Consensus       163 ~~gkIk  168 (168)
T d1piwa2         163 SEKDIK  168 (168)
T ss_dssp             HHTTCC
T ss_pred             HhCCCC
Confidence            999875

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.91  E-value=2e-24  Score=149.24  Aligned_cols=149  Identities=17%  Similarity=0.262  Sum_probs=116.2

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhH---HHh-HHHhhC
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE---LRN-ISRDAS   77 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~---~~~-~~~~~~   77 (202)
                      +.+.+++++|++|+|+|+| ++|++++|+|+..|++++++++..++   |++.++++|++.++++..   ... +.+.+.
T Consensus        20 ~~~~a~v~~G~~VlV~G~G-~iGl~a~~~ak~~Ga~~Vi~~d~~~~---r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~   95 (174)
T d1e3ia2          20 AINTAKVTPGSTCAVFGLG-CVGLSAIIGCKIAGASRIIAIDINGE---KFPKAKALGATDCLNPRELDKPVQDVITELT   95 (174)
T ss_dssp             HHTTSCCCTTCEEEEECCS-HHHHHHHHHHHHTTCSEEEEECSCGG---GHHHHHHTTCSEEECGGGCSSCHHHHHHHHH
T ss_pred             HHHhhCCCCCCEEEEECCC-hHHHHHHHHHHHhCCceeeeeccchH---HHHHHHHhCCCcccCCccchhhhhhhHhhhh
Confidence            3467899999999999986 99999999999999977766666554   789999999999998532   233 555566


Q ss_pred             CCCCeEEEecCCCchHHH-HHHhcccC-cEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHH
Q psy2961          78 IPKPKLALNCVGGNSATN-LLRTLVSK-GVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNE  155 (202)
Q Consensus        78 ~~~~d~vid~~g~~~~~~-~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  155 (202)
                      +.++|++|||+|.+.... ++++++++ |+++.+|... ....++...++ .++++.|+...++..        .+++.+
T Consensus        96 ~~G~d~vie~~G~~~~~~~a~~~~~~g~G~~v~vG~~~-~~~~i~~~~~~-~~k~i~Gs~~Gs~~~--------~~d~p~  165 (174)
T d1e3ia2          96 AGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKV-DEMTIPTVDVI-LGRSINGTFFGGWKS--------VDSVPN  165 (174)
T ss_dssp             TSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCSS-SEEEEEHHHHH-TTCEEEECSGGGCCH--------HHHHHH
T ss_pred             cCCCcEEEEecccchHHHHHHHHhhcCCeEEEecCCCC-CccccchHHHh-ccCEEEEEEeeCCCh--------HHHHHH
Confidence            679999999999987664 89999996 9999999543 44455555544 356888887665432        466889


Q ss_pred             HHHHHHcCC
Q psy2961         156 LTEMMRTGK  164 (202)
Q Consensus       156 ~~~~~~~g~  164 (202)
                      +++++++||
T Consensus       166 li~l~~~GK  174 (174)
T d1e3ia2         166 LVSDYKNKK  174 (174)
T ss_dssp             HHHHHHTTS
T ss_pred             HHHHHHCcC
Confidence            999998886

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=2.7e-25  Score=153.75  Aligned_cols=150  Identities=17%  Similarity=0.263  Sum_probs=119.6

Q ss_pred             ccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCe
Q psy2961           3 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPK   82 (202)
Q Consensus         3 ~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d   82 (202)
                      .+.+...++++|||+|++|++|++++|+||.+|++||+++++++    +.+.++++|+++++++++....+. .....+|
T Consensus        24 ~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~----k~~~~~~lGad~vi~~~~~~~~~~-l~~~~~~   98 (177)
T d1o89a2          24 EDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRES----THEYLKSLGASRVLPRDEFAESRP-LEKQVWA   98 (177)
T ss_dssp             HHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGG----GHHHHHHHTEEEEEEGGGSSSCCS-SCCCCEE
T ss_pred             HHhCCCCCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchh----HHHHHHhhccccccccccHHHHHH-HHhhcCC
Confidence            34445556679999999999999999999999999999999987    578999999999998764322111 2224579


Q ss_pred             EEEecCCCchHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHHHc
Q psy2961          83 LALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRT  162 (202)
Q Consensus        83 ~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (202)
                      .++|++|++.+...+++++++|+++.+|...+...+++...++.+++++.|++....     .++...+.++++.+.+.+
T Consensus        99 ~vvD~Vgg~~~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~k~~~i~G~~~~~~-----~~~~~~~~~~~L~~~l~~  173 (177)
T d1o89a2          99 GAIDTVGDKVLAKVLAQMNYGGCVAACGLAGGFTLPTTVMPFILRNVRLQGVDSVMT-----PPERRAQAWQRLVADLPE  173 (177)
T ss_dssp             EEEESSCHHHHHHHHHTEEEEEEEEECCCTTCSCCCCCSHHHHHHCCEEEECCSSSC-----CHHHHHHHHHHHHHHSCH
T ss_pred             eeEEEcchHHHHHHHHHhccccceEeecccCCccccccHHHHHHCCCeEEEEecccC-----CHHHHHHHHHHHHHhccc
Confidence            999999999998999999999999999988777777888888999999999764321     225556667777665544

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.91  E-value=2.2e-24  Score=149.27  Aligned_cols=141  Identities=19%  Similarity=0.258  Sum_probs=116.9

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChh-HHHh-HHHhhCCCCCeEE
Q psy2961           7 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE-ELRN-ISRDASIPKPKLA   84 (202)
Q Consensus         7 ~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~-~~~~-~~~~~~~~~~d~v   84 (202)
                      .++||++|+|.|+| ++|++++|+++.+|+++++++++.+.   |++.++++|+++++++. +..+ ..+.+.+.++|++
T Consensus        29 ~~~~g~~vli~GaG-~vG~~~~~~a~~~g~~~vv~~~~~~~---k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~v  104 (172)
T d1h2ba2          29 TLYPGAYVAIVGVG-GLGHIAVQLLKVMTPATVIALDVKEE---KLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVA  104 (172)
T ss_dssp             TCCTTCEEEEECCS-HHHHHHHHHHHHHCCCEEEEEESSHH---HHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEE
T ss_pred             ccCCCCEEEEeCCC-hHHHHHHHHHHhhcCcccccccchhH---HHHHHhhcccceeecCcccHHHHHHHhhCCCCceEE
Confidence            47999999999986 99999999999999977666655543   79999999999999753 4444 6677888899999


Q ss_pred             EecCCCchH-HHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHHHcC
Q psy2961          85 LNCVGGNSA-TNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTG  163 (202)
Q Consensus        85 id~~g~~~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  163 (202)
                      |||+|++.. ...+++++++|+++.+|..  .+.+++...++.+++++.|++.++           .++++++++++.+|
T Consensus       105 id~~g~~~~~~~a~~~l~~~G~iv~~G~~--~~~~~~~~~l~~k~~~i~Gs~~~~-----------~~d~~~~l~l~~~G  171 (172)
T d1h2ba2         105 MDFVGSQATVDYTPYLLGRMGRLIIVGYG--GELRFPTIRVISSEVSFEGSLVGN-----------YVELHELVTLALQG  171 (172)
T ss_dssp             EESSCCHHHHHHGGGGEEEEEEEEECCCS--SCCCCCHHHHHHTTCEEEECCSCC-----------HHHHHHHHHHHHTT
T ss_pred             EEecCcchHHHHHHHHHhCCCEEEEEeCc--ccccCCHHHHHhCCcEEEEEEecC-----------HHHHHHHHHHHHcC
Confidence            999999865 5589999999999999943  245778888999999999998664           34488899999988


Q ss_pred             C
Q psy2961         164 K  164 (202)
Q Consensus       164 ~  164 (202)
                      |
T Consensus       172 K  172 (172)
T d1h2ba2         172 K  172 (172)
T ss_dssp             S
T ss_pred             C
Confidence            6

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=1.6e-24  Score=149.35  Aligned_cols=144  Identities=18%  Similarity=0.221  Sum_probs=112.2

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeE
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKL   83 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~   83 (202)
                      +++++++|++|+|+|+| ++|++++|+|+.+|++++++.++++    +++.++++|++.++++.+....  .....++|+
T Consensus        24 ~~~~~~~G~~VlI~GaG-~vG~~a~qlak~~Ga~~i~~~~~~~----~~~~a~~lGad~~i~~~~~~~~--~~~~~~~D~   96 (168)
T d1uufa2          24 RHWQAGPGKKVGVVGIG-GLGHMGIKLAHAMGAHVVAFTTSEA----KREAAKALGADEVVNSRNADEM--AAHLKSFDF   96 (168)
T ss_dssp             HHTTCCTTCEEEEECCS-HHHHHHHHHHHHTTCEEEEEESSGG----GHHHHHHHTCSEEEETTCHHHH--HTTTTCEEE
T ss_pred             HHhCCCCCCEEEEeccc-hHHHHHHHHhhcccccchhhccchh----HHHHHhccCCcEEEECchhhHH--HHhcCCCce
Confidence            46889999999999985 9999999999999999998887776    5789999999999986544331  122368999


Q ss_pred             EEecCCCch-HHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHHHc
Q psy2961          84 ALNCVGGNS-ATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRT  162 (202)
Q Consensus        84 vid~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (202)
                      +|||+|++. +...+++++++|+++.+|........++...++.+++++.|+..++           .++++++++++.+
T Consensus        97 vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~l~~k~~~i~Gs~~~~-----------~~d~~e~l~l~a~  165 (168)
T d1uufa2          97 ILNTVAAPHNLDDFTTLLKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIGG-----------IPETQEMLDFCAE  165 (168)
T ss_dssp             EEECCSSCCCHHHHHTTEEEEEEEEECCCC-------CHHHHHTTTCEEEECCSCC-----------HHHHHHHHHHHHH
T ss_pred             eeeeeecchhHHHHHHHHhcCCEEEEeccCCCCcccccHHHHHHCCcEEEEEeecC-----------HHHHHHHHHHHHH
Confidence            999999876 5568999999999999996555444567777888999999987654           3447788888877


Q ss_pred             CCC
Q psy2961         163 GKL  165 (202)
Q Consensus       163 g~~  165 (202)
                      ++|
T Consensus       166 ~~I  168 (168)
T d1uufa2         166 HGI  168 (168)
T ss_dssp             HTC
T ss_pred             cCC
Confidence            654

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.4e-24  Score=147.56  Aligned_cols=145  Identities=18%  Similarity=0.244  Sum_probs=115.3

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCc-EEEEecCcccHHHHHHHHHhcCCceEeCh--hHHHh---HHHhhC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLGADYVFTE--EELRN---ISRDAS   77 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg~~~v~~~--~~~~~---~~~~~~   77 (202)
                      +++++++|++|+|+|+| ++|++++|+|+..|++ |+++..+++    +++.++++|+++++++  ++..+   ....+.
T Consensus        20 ~~~~~~~gd~VlI~G~G-~iG~~~~~~a~~~G~~~Vi~~d~~~~----rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~   94 (171)
T d1pl8a2          20 RRGGVTLGHKVLVCGAG-PIGMVTLLVAKAMGAAQVVVTDLSAT----RLSKAKEIGADLVLQISKESPQEIARKVEGQL   94 (171)
T ss_dssp             HHHTCCTTCEEEEECCS-HHHHHHHHHHHHTTCSEEEEEESCHH----HHHHHHHTTCSEEEECSSCCHHHHHHHHHHHH
T ss_pred             HHhCCCCCCEEEEECCC-ccHHHHHHHHHHcCCceEEeccCCHH----HHHHHHHhCCcccccccccccccccccccccC
Confidence            46789999999999986 9999999999999995 555554443    7899999999998863  23332   222334


Q ss_pred             CCCCeEEEecCCCchHHH-HHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHH
Q psy2961          78 IPKPKLALNCVGGNSATN-LLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNEL  156 (202)
Q Consensus        78 ~~~~d~vid~~g~~~~~~-~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  156 (202)
                      +.++|++|||+|++...+ ++++++++|+++.+|.. ..+.+++...++.+++++.|++.+            .+.++++
T Consensus        95 g~g~Dvvid~~G~~~~~~~a~~~~~~gG~iv~~G~~-~~~~~~~~~~~~~k~l~i~Gs~~~------------~~~~~~a  161 (171)
T d1pl8a2          95 GCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLG-SEMTTVPLLHAAIREVDIKGVFRY------------CNTWPVA  161 (171)
T ss_dssp             TSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCC-CSCCCCCHHHHHHTTCEEEECCSC------------SSCHHHH
T ss_pred             CCCceEEEeccCCchhHHHHHHHhcCCCEEEEEecC-CCCCccCHHHHHHCCcEEEEEeCC------------HhHHHHH
Confidence            578999999999987655 89999999999999954 455678888899999999998643            1237889


Q ss_pred             HHHHHcCCCC
Q psy2961         157 TEMMRTGKLA  166 (202)
Q Consensus       157 ~~~~~~g~~~  166 (202)
                      ++++++|++.
T Consensus       162 l~li~~gkid  171 (171)
T d1pl8a2         162 ISMLASKSVN  171 (171)
T ss_dssp             HHHHHTTSCC
T ss_pred             HHHHHcCCCC
Confidence            9999999874

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.91  E-value=1.5e-23  Score=144.99  Aligned_cols=146  Identities=14%  Similarity=0.162  Sum_probs=111.6

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCc-EEEEecCcccHHHHHHHHHhcCCceEeChh--HHHh-HHHhhCCC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRDASIP   79 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~--~~~~-~~~~~~~~   79 (202)
                      +++++++|++|+|+|+| ++|++++|+|+.+|++ |+++..+++    |++.++++|+++++++.  ++.+ +.+.+++.
T Consensus        21 ~~a~~~~g~~VlI~GaG-~vGl~~~q~ak~~Ga~~Vi~~d~~~~----r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~   95 (174)
T d1jqba2          21 ELADIEMGSSVVVIGIG-AVGLMGIAGAKLRGAGRIIGVGSRPI----CVEAAKFYGATDILNYKNGHIEDQVMKLTNGK   95 (174)
T ss_dssp             HHTTCCTTCCEEEECCS-HHHHHHHHHHHTTTCSCEEEECCCHH----HHHHHHHHTCSEEECGGGSCHHHHHHHHTTTS
T ss_pred             HHhCCCCCCEEEEEcCC-cchhhhhhhhhcccccccccccchhh----hHHHHHhhCccccccccchhHHHHHHHHhhcc
Confidence            46889999999999986 9999999999999995 555554443    78999999999999864  4667 88999889


Q ss_pred             CCeEEEecCCCchH-HHHHHhcccCcEEEEEeccCCC-CcCCCc--ccccccCeeEEEEechhHhhhcccHHHHHHHHHH
Q psy2961          80 KPKLALNCVGGNSA-TNLLRTLVSKGVMVTYGGMSRE-PVQIPT--SAFIFKDITLRGHWMTRWQKENKESAERKSMMNE  155 (202)
Q Consensus        80 ~~d~vid~~g~~~~-~~~~~~l~~~G~~v~~g~~~~~-~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  155 (202)
                      ++|++|||+|++.. ..++++++++|+++.+|..... ...++.  .....+++++.+.....+          +...+.
T Consensus        96 G~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~----------r~~~e~  165 (174)
T d1jqba2          96 GVDRVIMAGGGSETLSQAVKMVKPGGIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGLCPGG----------RLRAER  165 (174)
T ss_dssp             CEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCCSSSEEEEETTTTGGGTBCCEEEEBCCCCH----------HHHHHH
T ss_pred             CcceEEEccCCHHHHHHHHHHHhcCCEEEEEeecCCCCcCcCcHhHHHHHhCccEEEEecCCCC----------cccHHH
Confidence            99999999998765 4589999999999999854432 112221  223456788888765431          334667


Q ss_pred             HHHHHHcCC
Q psy2961         156 LTEMMRTGK  164 (202)
Q Consensus       156 ~~~~~~~g~  164 (202)
                      +.+++..|+
T Consensus       166 l~~li~~gk  174 (174)
T d1jqba2         166 LRDMVVYNR  174 (174)
T ss_dssp             HHHHHHTTS
T ss_pred             HHHHHHcCC
Confidence            778888775

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.90  E-value=2.4e-23  Score=143.75  Aligned_cols=142  Identities=20%  Similarity=0.259  Sum_probs=113.1

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeC--h--hHHH---h-HHHh
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT--E--EELR---N-ISRD   75 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~--~--~~~~---~-~~~~   75 (202)
                      +++++++|++|+|+|+| ++|++++|+|+.+|++|+++..+++    |++.++++|++.+++  .  .+..   . +.+ 
T Consensus        20 ~~~~~~~g~~vlV~G~G-~vG~~~~~~ak~~Ga~vi~v~~~~~----r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~-   93 (170)
T d1e3ja2          20 RRAGVQLGTTVLVIGAG-PIGLVSVLAAKAYGAFVVCTARSPR----RLEVAKNCGADVTLVVDPAKEEESSIIERIRS-   93 (170)
T ss_dssp             HHHTCCTTCEEEEECCS-HHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHTTCSEEEECCTTTSCHHHHHHHHHH-
T ss_pred             HHhCCCCCCEEEEEccc-ccchhhHhhHhhhcccccccchHHH----HHHHHHHcCCcEEEeccccccccchhhhhhhc-
Confidence            45789999999999876 9999999999999999998887765    789999999987663  1  2222   2 333 


Q ss_pred             hCCCCCeEEEecCCCchHH-HHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHH
Q psy2961          76 ASIPKPKLALNCVGGNSAT-NLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMN  154 (202)
Q Consensus        76 ~~~~~~d~vid~~g~~~~~-~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  154 (202)
                      +.+.++|++|||+|++... .++++++++|+++.+|... .+..++...++.+++++.|++.+.            +.++
T Consensus        94 ~~g~g~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~-~~~~~~~~~~~~k~i~i~gs~~~~------------~~~~  160 (170)
T d1e3ja2          94 AIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGS-QMVTVPLVNACAREIDIKSVFRYC------------NDYP  160 (170)
T ss_dssp             HSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCS-SCCCCCHHHHHTTTCEEEECCSCS------------SCHH
T ss_pred             ccccCCceeeecCCChHHHHHHHHHHhcCCceEEEecCC-CCCCcCHHHHHHCCCEEEEEECCH------------HHHH
Confidence            3357899999999998754 5899999999999999544 455788888999999999986431            2377


Q ss_pred             HHHHHHHcCC
Q psy2961         155 ELTEMMRTGK  164 (202)
Q Consensus       155 ~~~~~~~~g~  164 (202)
                      +.++++++|+
T Consensus       161 ~ai~li~~Gk  170 (170)
T d1e3ja2         161 IALEMVASGR  170 (170)
T ss_dssp             HHHHHHHTTS
T ss_pred             HHHHHHHcCC
Confidence            7889998885

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.90  E-value=3e-23  Score=144.02  Aligned_cols=151  Identities=16%  Similarity=0.175  Sum_probs=113.9

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhH----HHhHHHhhC
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE----LRNISRDAS   77 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~----~~~~~~~~~   77 (202)
                      |.++++++||++|+|+|++ ++|++++|+|+.+|+++++++++.++   +++.++++|+++++++.+    .....+.+.
T Consensus        20 l~~~~~~~~G~tVlI~GaG-GvG~~aiq~ak~~G~~~vi~~~~~~~---k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~   95 (176)
T d2fzwa2          20 AVNTAKLEPGSVCAVFGLG-GVGLAVIMGCKVAGASRIIGVDINKD---KFARAKEFGATECINPQDFSKPIQEVLIEMT   95 (176)
T ss_dssp             HHTTTCCCTTCEEEEECCS-HHHHHHHHHHHHHTCSEEEEECSCGG---GHHHHHHHTCSEEECGGGCSSCHHHHHHHHT
T ss_pred             HHHhhCCCCCCEEEEecch-hHHHHHHHHHHHHhcCceEEEcccHH---HHHHHHHhCCcEEEeCCchhhHHHHHHHHHc
Confidence            5578899999999999997 89999999999999876666655543   689999999999998632    333333344


Q ss_pred             CCCCeEEEecCCCchHHH-HHHhcccCcEEEEEeccCCC-CcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHH
Q psy2961          78 IPKPKLALNCVGGNSATN-LLRTLVSKGVMVTYGGMSRE-PVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNE  155 (202)
Q Consensus        78 ~~~~d~vid~~g~~~~~~-~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  155 (202)
                      +.++|++||++|++.+.. +..+++++|+++.++..... ....+....+.+++++.|+...++.        ..+++.+
T Consensus        96 ~~g~D~vid~~G~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~Gs~~G~~~--------~~~d~~~  167 (176)
T d2fzwa2          96 DGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEIATRPFQLVTGRTWKGTAFGGWK--------SVESVPK  167 (176)
T ss_dssp             TSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTTCCEEECTHHHHTTCEEEECSGGGCC--------HHHHHHH
T ss_pred             CCCCcEeeecCCCHHHHHHHHHhhcCCceeEEEEeeccccccccccHHHHHCCCEEEEEeeeCCc--------HHHHHHH
Confidence            568999999999988765 77888888888877644433 2223334445678899998766532        1456889


Q ss_pred             HHHHHHcCC
Q psy2961         156 LTEMMRTGK  164 (202)
Q Consensus       156 ~~~~~~~g~  164 (202)
                      +++++++||
T Consensus       168 li~l~~~GK  176 (176)
T d2fzwa2         168 LVSEYMSKK  176 (176)
T ss_dssp             HHHHHHTTS
T ss_pred             HHHHHHcCC
Confidence            999999886

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.90  E-value=4.4e-23  Score=142.60  Aligned_cols=149  Identities=17%  Similarity=0.229  Sum_probs=111.7

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhH----HHhHHHhhC
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE----LRNISRDAS   77 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~----~~~~~~~~~   77 (202)
                      +.+++++++|++|+|+|+| ++|++++|+|+.+|++.+++++..++   |++.++++|+++++|+.+    ..+..+.+.
T Consensus        19 ~~~~a~~~~G~~VlV~GaG-gvGl~a~~~ak~~G~~~Vi~~d~~~~---kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~   94 (174)
T d1p0fa2          19 AVNTAKVTPGSTCAVFGLG-GVGFSAIVGCKAAGASRIIGVGTHKD---KFPKAIELGATECLNPKDYDKPIYEVICEKT   94 (174)
T ss_dssp             HHTTTCCCTTCEEEEECCS-HHHHHHHHHHHHHTCSEEEEECSCGG---GHHHHHHTTCSEEECGGGCSSCHHHHHHHHT
T ss_pred             HHHhhCCCCCCEEEEECCC-chhHHHHHHHHHcCCceeeccCChHH---HHHHHHHcCCcEEEcCCCchhHHHHHHHHhc
Confidence            4577899999999999986 99999999999999866666655443   789999999999998643    233445555


Q ss_pred             CCCCeEEEecCCCchHHH-HHHhccc-CcEEEEEeccCCCCcCCCcc-cccccCeeEEEEechhHhhhcccHHHHHHHHH
Q psy2961          78 IPKPKLALNCVGGNSATN-LLRTLVS-KGVMVTYGGMSREPVQIPTS-AFIFKDITLRGHWMTRWQKENKESAERKSMMN  154 (202)
Q Consensus        78 ~~~~d~vid~~g~~~~~~-~~~~l~~-~G~~v~~g~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  154 (202)
                      +.++|++||++|.+.... .+..+++ +|+++.+|.... ...++.. ..+.+++++.|+.+.++.         .++++
T Consensus        95 ~~G~d~vid~~g~~~~~~~~~~~~~~~~G~~v~vG~~~~-~~~~~~~~~~~~~~~~i~Gs~~G~~~---------~~d~~  164 (174)
T d1p0fa2          95 NGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASP-NERLPLDPLLLLTGRSLKGSVFGGFK---------GEEVS  164 (174)
T ss_dssp             TSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCT-TCCEEECTHHHHTTCEEEECSGGGCC---------GGGHH
T ss_pred             CCCCcEEEEcCCCchHHHHHHHHHHHhcCceEEEEEecC-ccccccCHHHHhCCCEEEEEEeCCCC---------HHHHH
Confidence            679999999999987654 6777765 599999995443 2334332 234567899998866432         23478


Q ss_pred             HHHHHHHcCC
Q psy2961         155 ELTEMMRTGK  164 (202)
Q Consensus       155 ~~~~~~~~g~  164 (202)
                      ++++++.+||
T Consensus       165 ~lidl~~~gK  174 (174)
T d1p0fa2         165 RLVDDYMKKK  174 (174)
T ss_dssp             HHHHHHHTTS
T ss_pred             HHHHHHHcCC
Confidence            8999998885

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.88  E-value=2e-22  Score=139.71  Aligned_cols=151  Identities=15%  Similarity=0.141  Sum_probs=114.8

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhH---HHh-HHHhhC
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE---LRN-ISRDAS   77 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~---~~~-~~~~~~   77 (202)
                      +.+++++++|++|+|+|++ ++|++++++++..|+.+++++++.++   |++.++++|+++++|+.+   ... +.+.+.
T Consensus        20 ~~~~a~~k~g~~VlI~G~G-g~g~~~~~~~~~~g~~~Vi~~~~~~~---rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~   95 (175)
T d1cdoa2          20 AVNTAKVEPGSTCAVFGLG-AVGLAAVMGCHSAGAKRIIAVDLNPD---KFEKAKVFGATDFVNPNDHSEPISQVLSKMT   95 (175)
T ss_dssp             HHTTTCCCTTCEEEEECCS-HHHHHHHHHHHHTTCSEEEEECSCGG---GHHHHHHTTCCEEECGGGCSSCHHHHHHHHH
T ss_pred             HHHhhCCCCCCEEEEEecC-CccchHHHHHHHHhhchheeecchHH---HHHHHHHcCCcEEEcCCCcchhHHHHHHhhc
Confidence            4577899999999999987 89999999999999865555554443   789999999999998643   234 666666


Q ss_pred             CCCCeEEEecCCCchHHH-HHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHH
Q psy2961          78 IPKPKLALNCVGGNSATN-LLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNEL  156 (202)
Q Consensus        78 ~~~~d~vid~~g~~~~~~-~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  156 (202)
                      +.++|+++|++|+..... ++.+++++|.++.++.........+....+.+++++.|++..++.        .++++.++
T Consensus        96 ~~G~d~vid~~G~~~~~~~a~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~i~Gs~~G~~~--------~~~d~~~~  167 (175)
T d1cdoa2          96 NGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDLHDVATRPIQLIAGRTWKGSMFGGFK--------GKDGVPKM  167 (175)
T ss_dssp             TSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCSSSCEEECHHHHHTTCEEEECSGGGCC--------HHHHHHHH
T ss_pred             cCCcceeeeecCCHHHHHHHHHHhhCCCcceeEEEecCCcccCccHHHHHCCcEEEEEEEeCCc--------HHHHHHHH
Confidence            689999999999987755 677777775555545455544455556667788999998766542        25678899


Q ss_pred             HHHHHcCC
Q psy2961         157 TEMMRTGK  164 (202)
Q Consensus       157 ~~~~~~g~  164 (202)
                      ++++.+||
T Consensus       168 i~l~~~gK  175 (175)
T d1cdoa2         168 VKAYLDKK  175 (175)
T ss_dssp             HHHHHTTS
T ss_pred             HHHHHcCC
Confidence            99999886

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.88  E-value=9.3e-23  Score=140.21  Aligned_cols=141  Identities=19%  Similarity=0.243  Sum_probs=112.2

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeCh--hHHHh-HHHhhCCCC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE--EELRN-ISRDASIPK   80 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~--~~~~~-~~~~~~~~~   80 (202)
                      +++++++|++|+|.|+| ++|++++|+|+.+|++|+++.++++    +++.++++|+++++++  +++.+ +.+.+  .+
T Consensus        21 ~~~~~~~g~~VlV~GaG-~vG~~~~~~ak~~G~~Vi~~~~~~~----~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~--~g   93 (166)
T d1llua2          21 KQTNARPGQWVAISGIG-GLGHVAVQYARAMGLHVAAIDIDDA----KLELARKLGASLTVNARQEDPVEAIQRDI--GG   93 (166)
T ss_dssp             HHHTCCTTCEEEEECCS-HHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHTTCSEEEETTTSCHHHHHHHHH--SS
T ss_pred             HHhCCCCCCEEEEeecc-ccHHHHHHHHHHcCCccceecchhh----HHHhhhccCccccccccchhHHHHHHHhh--cC
Confidence            35789999999999985 9999999999999999999887765    7899999999999975  34555 66655  34


Q ss_pred             CeEEEecCCCc-hHHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHH
Q psy2961          81 PKLALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEM  159 (202)
Q Consensus        81 ~d~vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (202)
                      .+.++++++++ .+...+++++++|+++.+|.. ..+.+++...++.+++++.|+..++           .+++++++++
T Consensus        94 ~~~~i~~~~~~~~~~~~~~~l~~~G~iv~~G~~-~~~~~~~~~~~~~k~~~i~Gs~~~~-----------~~d~~e~l~l  161 (166)
T d1llua2          94 AHGVLVTAVSNSAFGQAIGMARRGGTIALVGLP-PGDFPTPIFDVVLKGLHIAGSIVGT-----------RADLQEALDF  161 (166)
T ss_dssp             EEEEEECCSCHHHHHHHHTTEEEEEEEEECCCC-SSEEEEEHHHHHHTTCEEEECCSCC-----------HHHHHHHHHH
T ss_pred             CcccccccccchHHHHHHHHhcCCcEEEEEEec-CCCccCCHHHHHhCCcEEEEEeecC-----------HHHHHHHHHH
Confidence            55555555554 445589999999999999854 4456778888899999999987653           3458888899


Q ss_pred             HHcC
Q psy2961         160 MRTG  163 (202)
Q Consensus       160 ~~~g  163 (202)
                      +.+|
T Consensus       162 ~~~G  165 (166)
T d1llua2         162 AGEG  165 (166)
T ss_dssp             HHTT
T ss_pred             HHCc
Confidence            8887

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.88  E-value=7.4e-22  Score=136.89  Aligned_cols=150  Identities=14%  Similarity=0.159  Sum_probs=112.0

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCc-EEEEecCcccHHHHHHHHHhcCCceEeChhH----HHhHHHhh
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLGADYVFTEEE----LRNISRDA   76 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~----~~~~~~~~   76 (202)
                      |.+.++++|||+|+|+|++ ++|++++|+++..|+. |+++..+++    |++.++++|+++++++.+    .....+.+
T Consensus        20 l~~~~~vk~GdtVlV~GaG-G~G~~~~~~~~~~g~~~Vi~~~~~~~----k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~   94 (176)
T d2jhfa2          20 AVKVAKVTQGSTCAVFGLG-GVGLSVIMGCKAAGAARIIGVDINKD----KFAKAKEVGATECVNPQDYKKPIQEVLTEM   94 (176)
T ss_dssp             HHTTTCCCTTCEEEEECCS-HHHHHHHHHHHHTTCSEEEEECSCGG----GHHHHHHTTCSEEECGGGCSSCHHHHHHHH
T ss_pred             HHHhhCCCCCCEEEEECCC-CcHHHHHHHHHHcCCceEEeecCcHH----HHHHHHHhCCeeEEecCCchhHHHHHHHHH
Confidence            5678899999999999997 8999999999999975 555554544    689999999999997533    23345555


Q ss_pred             CCCCCeEEEecCCCchHHH-HHHhcccCcEEEEEeccCCCCc-CCCcccccccCeeEEEEechhHhhhcccHHHHHHHHH
Q psy2961          77 SIPKPKLALNCVGGNSATN-LLRTLVSKGVMVTYGGMSREPV-QIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMN  154 (202)
Q Consensus        77 ~~~~~d~vid~~g~~~~~~-~~~~l~~~G~~v~~g~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  154 (202)
                      .+.++|++||++|.+.... ++.+++++|+.+.++....... ......++.+++++.|+...++.        .++++.
T Consensus        95 ~~~G~D~vid~~G~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gs~~G~~~--------~~~~~~  166 (176)
T d2jhfa2          95 SNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIFGGFK--------SKDSVP  166 (176)
T ss_dssp             TTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCCCTTCCEEECTHHHHTTCEEEECSGGGCC--------HHHHHH
T ss_pred             hcCCCCEEEecCCchhHHHHHHHHHhcCCcceEEecCCCCcccccccHHHHhCCCEEEEEEEeCCC--------HHHHHH
Confidence            5679999999999988765 7888888765555554443322 33334566789999998765432        255688


Q ss_pred             HHHHHHHcCC
Q psy2961         155 ELTEMMRTGK  164 (202)
Q Consensus       155 ~~~~~~~~g~  164 (202)
                      ++++++.+||
T Consensus       167 ~li~~~~~GK  176 (176)
T d2jhfa2         167 KLVADFMAKK  176 (176)
T ss_dssp             HHHHHHHTTS
T ss_pred             HHHHHHHCcC
Confidence            8999998885

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.88  E-value=2.3e-22  Score=138.45  Aligned_cols=144  Identities=19%  Similarity=0.285  Sum_probs=115.9

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeCh--hHHHh-HHHhhCCCC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE--EELRN-ISRDASIPK   80 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~--~~~~~-~~~~~~~~~   80 (202)
                      ++.+++||++|+|+|+| ++|++++|+++..|++|+++..+++    ++++++++|++.++++  .++.+ +++.+.  +
T Consensus        21 ~~~~~~~g~~vlv~G~G-~iG~~a~~~a~~~g~~v~~~~~~~~----r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~--~   93 (168)
T d1rjwa2          21 KVTGAKPGEWVAIYGIG-GLGHVAVQYAKAMGLNVVAVDIGDE----KLELAKELGADLVVNPLKEDAAKFMKEKVG--G   93 (168)
T ss_dssp             HHHTCCTTCEEEEECCS-TTHHHHHHHHHHTTCEEEEECSCHH----HHHHHHHTTCSEEECTTTSCHHHHHHHHHS--S
T ss_pred             HHhCCCCCCEEEEeecc-cchhhhhHHHhcCCCeEeccCCCHH----HhhhhhhcCcceecccccchhhhhcccccC--C
Confidence            35689999999999875 8999999999999999888887765    7899999999999985  35666 777774  4


Q ss_pred             CeEEEecCCCch-HHHHHHhcccCcEEEEEeccCCCCcCCCcccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHH
Q psy2961          81 PKLALNCVGGNS-ATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEM  159 (202)
Q Consensus        81 ~d~vid~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (202)
                      .|.++++++++. +...+++++++|+++.+|. ...+..++...++.+++++.|+..++           .+++++++++
T Consensus        94 ~~~~v~~~~~~~~~~~a~~~l~~~G~i~~~g~-~~~~~~~~~~~~~~~~~~i~gs~~~~-----------~~~~~~~l~l  161 (168)
T d1rjwa2          94 VHAAVVTAVSKPAFQSAYNSIRRGGACVLVGL-PPEEMPIPIFDTVLNGIKIIGSIVGT-----------RKDLQEALQF  161 (168)
T ss_dssp             EEEEEESSCCHHHHHHHHHHEEEEEEEEECCC-CSSEEEEEHHHHHHTTCEEEECCSCC-----------HHHHHHHHHH
T ss_pred             CceEEeecCCHHHHHHHHHHhccCCceEeccc-ccCCCCCCHHHHHHCCcEEEEEeeCC-----------HHHHHHHHHH
Confidence            455555555554 5568999999999999984 44555677788889999999987553           4568899999


Q ss_pred             HHcCCCC
Q psy2961         160 MRTGKLA  166 (202)
Q Consensus       160 ~~~g~~~  166 (202)
                      +++|+++
T Consensus       162 ~~~Gkik  168 (168)
T d1rjwa2         162 AAEGKVK  168 (168)
T ss_dssp             HHTTSCC
T ss_pred             HHhCCCC
Confidence            9999885

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.87  E-value=8.5e-22  Score=138.34  Aligned_cols=146  Identities=16%  Similarity=0.102  Sum_probs=110.0

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeCh--hHHHh-HHHhhCCCC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE--EELRN-ISRDASIPK   80 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~--~~~~~-~~~~~~~~~   80 (202)
                      +++++++|++|+|+|+| ++|++++|+|+..|+.+++++++.+.   |++.++++|+++++++  +++.+ +.+.+++.+
T Consensus        19 ~~a~v~~G~tVlV~GaG-~vGl~a~~~ak~~ga~~Vi~~d~~~~---rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g   94 (195)
T d1kola2          19 VTAGVGPGSTVYVAGAG-PVGLAAAASARLLGAAVVIVGDLNPA---RLAHAKAQGFEIADLSLDTPLHEQIAALLGEPE   94 (195)
T ss_dssp             HHTTCCTTCEEEEECCS-HHHHHHHHHHHHTTCSEEEEEESCHH---HHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSC
T ss_pred             HHhCCCCCCEEEEECcC-HHHHHHHHHHHhhcccceeeecccch---hhHhhhhccccEEEeCCCcCHHHHHHHHhCCCC
Confidence            46899999999999986 99999999999999965555555433   7999999999999975  56777 888999899


Q ss_pred             CeEEEecCCCc----------------hHHHHHHhcccCcEEEEEeccCCCCc------------CCCcccccccCeeEE
Q psy2961          81 PKLALNCVGGN----------------SATNLLRTLVSKGVMVTYGGMSREPV------------QIPTSAFIFKDITLR  132 (202)
Q Consensus        81 ~d~vid~~g~~----------------~~~~~~~~l~~~G~~v~~g~~~~~~~------------~~~~~~~~~~~~~~~  132 (202)
                      +|++||++|.+                .+..++++++++|+++.+|.......            .++...++.+++++.
T Consensus        95 ~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~  174 (195)
T d1kola2          95 VDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYVTEDPGAVDAAAKIGSLSIRFGLGWAKSHSFH  174 (195)
T ss_dssp             EEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCCSCCTTCSSHHHHTTCCCCCHHHHHHTTCEEE
T ss_pred             cEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeecCCCcccchhhhhhcCceeeeHHHHHhhcceec
Confidence            99999999854                34458899999999999995443211            223334556777775


Q ss_pred             EEechhHhhhcccHHHHHHHHHHHHHHHHcCC
Q psy2961         133 GHWMTRWQKENKESAERKSMMNELTEMMRTGK  164 (202)
Q Consensus       133 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  164 (202)
                      +-.           ....+.++++++++.+++
T Consensus       175 ~g~-----------~~v~~~~~~Ll~~I~~~k  195 (195)
T d1kola2         175 TGQ-----------TPVMKYNRALMQAIMWDR  195 (195)
T ss_dssp             ESS-----------CCHHHHHHHHHHHHHTTS
T ss_pred             cCC-----------CchHHHHHHHHHHHHcCC
Confidence            422           112445677888887664

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.87  E-value=1.7e-21  Score=134.72  Aligned_cols=146  Identities=15%  Similarity=0.169  Sum_probs=107.3

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCc-EEEEecCcccHHHHHHHHHhcCCceEeChhHH---Hh-HHHhh
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLGADYVFTEEEL---RN-ISRDA   76 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~---~~-~~~~~   76 (202)
                      +.+.+++++|++|+|+|+| ++|++++|+++.+|+. ||++..+++    |++.++++|+++++|+.+.   .. +.+.+
T Consensus        21 v~~~~~~~~g~tVlI~G~G-gvGl~ai~~ak~~G~~~Vi~vd~~~~----kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~   95 (176)
T d1d1ta2          21 AVKTGKVKPGSTCVVFGLG-GVGLSVIMGCKSAGASRIIGIDLNKD----KFEKAMAVGATECISPKDSTKPISEVLSEM   95 (176)
T ss_dssp             HHTTSCCCTTCEEEEECCS-HHHHHHHHHHHHTTCSEEEEECSCGG----GHHHHHHHTCSEEECGGGCSSCHHHHHHHH
T ss_pred             HHHhhCCCCCCEEEEECCC-chhHHHHHHHHHcCCceEEEecCcHH----HHHHHHhcCCcEEECccccchHHHHHHHHh
Confidence            4567889999999999987 9999999999999975 555555554    7999999999999986542   33 56667


Q ss_pred             CCCCCeEEEecCCCchHHH-HHHhccc-CcEEEEEeccCCCCc-CCCcccccccCeeEEEEechhHhhhcccHHHHHHHH
Q psy2961          77 SIPKPKLALNCVGGNSATN-LLRTLVS-KGVMVTYGGMSREPV-QIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMM  153 (202)
Q Consensus        77 ~~~~~d~vid~~g~~~~~~-~~~~l~~-~G~~v~~g~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  153 (202)
                      .+.++|++||++|.+.... .+..+.+ +|+++.+|....... .+++. .+.+++++.|++..+...        .+++
T Consensus        96 ~g~G~d~vi~~~g~~~~~~~a~~~~~~~~G~~v~vG~~~~~~~~~~~~~-~~~~~~~i~Gs~~G~~~~--------~~di  166 (176)
T d1d1ta2          96 TGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSAKMLTYDPM-LLFTGRTWKGCVFGGLKS--------RDDV  166 (176)
T ss_dssp             HTSCCCEEEECSCCHHHHHHHHTTSCTTTCEEEECSCCCTTCCEEECTH-HHHTTCEEEECSGGGCCH--------HHHH
T ss_pred             ccccceEEEEeCCchHHHHHHHHHhhcCCeEEEEEEccccccccCCCHH-HHhCCCEEEEEEEeCCCc--------HHHH
Confidence            7789999999999987654 5666654 599999996544322 33333 345678999987654322        4556


Q ss_pred             HHHHHHHH
Q psy2961         154 NELTEMMR  161 (202)
Q Consensus       154 ~~~~~~~~  161 (202)
                      .++++++.
T Consensus       167 p~li~~~~  174 (176)
T d1d1ta2         167 PKLVTEFL  174 (176)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            66666653

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=1.2e-13  Score=80.75  Aligned_cols=54  Identities=22%  Similarity=0.438  Sum_probs=48.6

Q ss_pred             ccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCC
Q psy2961           3 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA   60 (202)
Q Consensus         3 ~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~   60 (202)
                      .+...++++++|||+|++|++|.+++|+++..|++|++++++++    +.++++++|+
T Consensus        24 ~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~----k~~~~~~lGA   77 (77)
T d1o8ca2          24 EDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRES----THEYLKSLGA   77 (77)
T ss_dssp             HHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGG----GHHHHHHHTE
T ss_pred             HhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHH----HHHHHHHCCC
Confidence            34567789999999999999999999999999999999999887    5899999885

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.60  E-value=2.9e-07  Score=65.89  Aligned_cols=81  Identities=20%  Similarity=0.266  Sum_probs=58.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .++.+||+|+++++|.++++.+...|++|+.+.++++..++..+.+++.|.+...   |   +++... +.+... -+++
T Consensus         9 enKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~i   88 (251)
T d2c07a1           9 ENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKNV   88 (251)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhcCCc
Confidence            4789999999999999999999999999999888877655555666667654322   2   334433 333211 2579


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.+.|.
T Consensus        89 Dilvnnag~   97 (251)
T d2c07a1          89 DILVNNAGI   97 (251)
T ss_dssp             CEEEECCCC
T ss_pred             eeeeecccc
Confidence            999998874

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.58  E-value=4.8e-07  Score=64.72  Aligned_cols=81  Identities=19%  Similarity=0.248  Sum_probs=56.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHH-HhcCCceEe---C---hhHHHh-HHHhhC-CCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGADYVF---T---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~v~---~---~~~~~~-~~~~~~-~~~   80 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.++.+...+..+.+ ++.|.+...   |   +++... +.+... -++
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   83 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFGK   83 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            4789999999999999999999999999999888876544433333 445654322   3   333333 322211 157


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|++|+++|.
T Consensus        84 iDiLVnnAG~   93 (251)
T d1vl8a_          84 LDTVVNAAGI   93 (251)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=98.58  E-value=4.5e-07  Score=64.73  Aligned_cols=103  Identities=15%  Similarity=0.154  Sum_probs=70.4

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-C---hhHHHh-HHHhhC-CCCCe
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-T---EEELRN-ISRDAS-IPKPK   82 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~---~~~~~~-~~~~~~-~~~~d   82 (202)
                      -.|+++||+|+++++|.++++.+...|++|+.+.++++    ..+.+++.+...+. |   +++..+ +.+... -+++|
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~----~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iD   78 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPE----GKEVAEAIGGAFFQVDLEDERERVRFVEEAAYALGRVD   78 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTT----HHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhcCCCC
Confidence            36899999999999999999999999999988887765    45666677665443 2   333333 332211 15799


Q ss_pred             EEEecCCCc-----------h---------------HHHHHHhcc--cCcEEEEEeccCCC
Q psy2961          83 LALNCVGGN-----------S---------------ATNLLRTLV--SKGVMVTYGGMSRE  115 (202)
Q Consensus        83 ~vid~~g~~-----------~---------------~~~~~~~l~--~~G~~v~~g~~~~~  115 (202)
                      ++|+++|..           .               ...+++.|+  .+|++|.++.....
T Consensus        79 iLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~~~  139 (248)
T d2d1ya1          79 VLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGL  139 (248)
T ss_dssp             EEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGT
T ss_pred             eEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhccccccccccccccccccccc
Confidence            999998731           0               112344553  36899999866543

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=98.58  E-value=2.7e-07  Score=65.76  Aligned_cols=166  Identities=13%  Similarity=0.199  Sum_probs=93.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCc---eEeC---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD---YVFT---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~---~v~~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .|++++|+|+++++|.++++.+...|++|+.+.++++..+   +..++++..   ...|   +++... +.+... -+++
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~---~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   79 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQ---AISDYLGANGKGLMLNVTDPASIESVLEKIRAEFGEV   79 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHH---HHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHH---HHHHHhCCCCcEEEEEecCHHHhhhhhhhhhcccCCc
Confidence            5889999999999999999999999999998887766422   223344432   2223   334333 333221 2579


Q ss_pred             eEEEecCCCch--------------------------HHHHHHhc--ccCcEEEEEeccCCCCcCCC-------------
Q psy2961          82 KLALNCVGGNS--------------------------ATNLLRTL--VSKGVMVTYGGMSREPVQIP-------------  120 (202)
Q Consensus        82 d~vid~~g~~~--------------------------~~~~~~~l--~~~G~~v~~g~~~~~~~~~~-------------  120 (202)
                      |++|+++|...                          ...+++.|  +.+|+++.++..........             
T Consensus        80 DilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~~~~~~~~Y~asKaal~~  159 (243)
T d1q7ba_          80 DILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGNGGQANYAAAKAGLIG  159 (243)
T ss_dssp             SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTCHHHHHHHHHHHH
T ss_pred             ceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecchhhcCCCCCCHHHHHHHHHHHH
Confidence            99999987420                          11234455  45799999986543211111             


Q ss_pred             -----cccccccCeeEEEEechhHhhhcccHHHHHHHHHHHHHHHHcCCCCCCcceeechhhHHHHHHHHh
Q psy2961         121 -----TSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTM  186 (202)
Q Consensus       121 -----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~  186 (202)
                           ..++...++++-...+.....     +......++..+.+.+.   .+..+....+++.++...+.
T Consensus       160 lt~~lA~ela~~gIrVN~I~PG~i~T-----~~~~~~~~~~~~~~~~~---~pl~R~~~pedvA~~v~fL~  222 (243)
T d1q7ba_         160 FSKSLAREVASRGITVNVVAPGFIET-----DMTRALSDDQRAGILAQ---VPAGRLGGAQEIANAVAFLA  222 (243)
T ss_dssp             HHHHHHHHHGGGTEEEEEEEECSBCC-----HHHHTSCHHHHHHHHTT---CTTSSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCccCeEEEEEecceEec-----hhhhhhhhhHHHHHHhc---CCCCCCCCHHHHHHHHHHHh
Confidence                 122334566666655442211     11111122222222221   12234456788988888876

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=2.3e-07  Score=67.29  Aligned_cols=100  Identities=18%  Similarity=0.282  Sum_probs=68.0

Q ss_pred             CCEE-EEeCCCcHHHHHHHH-HHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHH---h-HHHhhCC
Q psy2961          11 GDVV-IQNGANSACGQNVIQ-IARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELR---N-ISRDASI   78 (202)
Q Consensus        11 g~~V-lI~g~~~~vG~~~i~-la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~---~-~~~~~~~   78 (202)
                      |.+| ||+|+++|+|+++++ +++..|++|+.++++.+..++..+.+++.+....+   |   .++..   + +.+..  
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~--   79 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEY--   79 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHH--
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhc--
Confidence            6667 899999999999775 55666999999999988665556666666544222   3   23322   3 33333  


Q ss_pred             CCCeEEEecCCCc-----------h---------------HHHHHHhcccCcEEEEEecc
Q psy2961          79 PKPKLALNCVGGN-----------S---------------ATNLLRTLVSKGVMVTYGGM  112 (202)
Q Consensus        79 ~~~d~vid~~g~~-----------~---------------~~~~~~~l~~~G~~v~~g~~  112 (202)
                      +.+|++|+++|-.           .               ...++..|++.|+++.++..
T Consensus        80 g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~  139 (275)
T d1wmaa1          80 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSI  139 (275)
T ss_dssp             SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCH
T ss_pred             CCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc
Confidence            5799999998831           0               11235567888999998754

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.55  E-value=5.9e-07  Score=60.31  Aligned_cols=116  Identities=13%  Similarity=0.213  Sum_probs=79.7

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeC----hh--------------H----
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT----EE--------------E----   68 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~----~~--------------~----   68 (202)
                      .-+|+|+|+| .+|+.+++.|+.+|+.|.+...+.+    +++++++++...+.-    ..              +    
T Consensus        29 pa~VvViGaG-vaG~~Aa~~A~~lGA~V~v~D~~~~----~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~  103 (183)
T d1l7da1          29 PARVLVFGVG-VAGLQAIATAKRLGAVVMATDVRAA----TKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKK  103 (183)
T ss_dssp             CCEEEEECCS-HHHHHHHHHHHHTTCEEEEECSCST----THHHHHHTTCEECCC-----------------------CC
T ss_pred             CcEEEEEcCc-HHHHHHHHHHHHcCCEEEEEeccHH----HHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHH
Confidence            4689999999 9999999999999999999888877    588999998766531    00              0    


Q ss_pred             HHh-HHHhhCCCCCeEEEecCC---Cc--h--HHHHHHhcccCcEEEEEeccCCCCcCCC--cccccccCeeEEE
Q psy2961          69 LRN-ISRDASIPKPKLALNCVG---GN--S--ATNLLRTLVSKGVMVTYGGMSREPVQIP--TSAFIFKDITLRG  133 (202)
Q Consensus        69 ~~~-~~~~~~~~~~d~vid~~g---~~--~--~~~~~~~l~~~G~~v~~g~~~~~~~~~~--~~~~~~~~~~~~g  133 (202)
                      ..+ +.+..  ...|+||-++-   ..  .  ..+.++.|+||+.+|++....+......  .+.+...++.+++
T Consensus       104 ~~~~l~~~l--~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDvaidqGGn~Ets~~~~~~~~~gV~~~g  176 (183)
T d1l7da1         104 QAEAVLKEL--VKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVG  176 (183)
T ss_dssp             HHHHHHHHH--TTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGGTCSSTTCCTTCEEEETTEEEEC
T ss_pred             HHHHHHHHH--HhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEeecCCCccccCcCCCEEEECCEEEEe
Confidence            112 33333  46899998873   22  2  2348899999999999986655544222  2223344555554

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.54  E-value=2.2e-07  Score=66.72  Aligned_cols=81  Identities=22%  Similarity=0.297  Sum_probs=59.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.++++..++..+.+++.|.....   |   +++... +.+... -+++
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~g~i   89 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGKV   89 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            6899999999999999999999999999999988877655556667777765333   2   333333 222211 1579


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++++++|.
T Consensus        90 DilvnnAG~   98 (255)
T d1fmca_          90 DILVNNAGG   98 (255)
T ss_dssp             CEEEECCCC
T ss_pred             CEeeeCCcC
Confidence            999999874

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=98.54  E-value=3.7e-07  Score=65.64  Aligned_cols=81  Identities=16%  Similarity=0.220  Sum_probs=59.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC--CCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS--IPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~--~~~   80 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.++++..++..+.+++.|.....   |   +++... +.+...  +..
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~~~~   86 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHGK   86 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTTC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHhCCC
Confidence            6899999999999999999999999999999988877665555666666654322   2   334444 333322  246


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|++++++|.
T Consensus        87 idilvnnAG~   96 (259)
T d2ae2a_          87 LNILVNNAGI   96 (259)
T ss_dssp             CCEEEECCCC
T ss_pred             ceEEEECCce
Confidence            9999999984

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.53  E-value=8.9e-07  Score=63.57  Aligned_cols=106  Identities=17%  Similarity=0.215  Sum_probs=71.5

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccH-HHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-C
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDI-DKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-I   78 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~-~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~   78 (202)
                      +-.|++|||+|+++++|.++++.+...|++|+.+++++++. ++..+.+++.|.+.+.   |   .++... +.+... .
T Consensus         3 ~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~   82 (259)
T d1ja9a_           3 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHF   82 (259)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHHc
Confidence            45799999999999999999999999999999877766542 2334555677765433   2   333333 322211 1


Q ss_pred             CCCeEEEecCCCch--------------------------HHHHHHhcccCcEEEEEeccC
Q psy2961          79 PKPKLALNCVGGNS--------------------------ATNLLRTLVSKGVMVTYGGMS  113 (202)
Q Consensus        79 ~~~d~vid~~g~~~--------------------------~~~~~~~l~~~G~~v~~g~~~  113 (202)
                      +++|++|.++|...                          ...++..|+.+|+++.+....
T Consensus        83 g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~~  143 (259)
T d1ja9a_          83 GGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIA  143 (259)
T ss_dssp             SCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred             CCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccccccc
Confidence            57999999998420                          122456778888888776443

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.53  E-value=1.7e-07  Score=64.37  Aligned_cols=80  Identities=6%  Similarity=0.018  Sum_probs=56.1

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhc-CCc-eEeChhHHHhHHHhhCCCCCeEEEe
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL-GAD-YVFTEEELRNISRDASIPKPKLALN   86 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~l-g~~-~v~~~~~~~~~~~~~~~~~~d~vid   86 (202)
                      -.|++|+|+|++|++|..+++.+...|++|+.+.++.++..+..+.+.+. ... ...|-.+...+.+..  .++|++|+
T Consensus        21 l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~iDilin   98 (191)
T d1luaa1          21 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAV--KGAHFVFT   98 (191)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHT--TTCSEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHh--cCcCeeee
Confidence            37899999999999999999999999999999999887544444444332 222 222222222244443  57899999


Q ss_pred             cCCC
Q psy2961          87 CVGG   90 (202)
Q Consensus        87 ~~g~   90 (202)
                      ++|.
T Consensus        99 ~Ag~  102 (191)
T d1luaa1          99 AGAI  102 (191)
T ss_dssp             CCCT
T ss_pred             cCcc
Confidence            9874

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=8.8e-07  Score=63.55  Aligned_cols=81  Identities=23%  Similarity=0.306  Sum_probs=57.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCc-eEe----C---hhHHHh-HHHhhC-CC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD-YVF----T---EEELRN-ISRDAS-IP   79 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~-~v~----~---~~~~~~-~~~~~~-~~   79 (202)
                      +|+++||+|+++++|.++++.+...|++|+.+.++++..++..+.+++.+.. .++    |   +++... +.+... -+
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~g   88 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS   88 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            4789999999999999999999999999999888876555445556655532 221    2   344333 332211 15


Q ss_pred             CCeEEEecCCC
Q psy2961          80 KPKLALNCVGG   90 (202)
Q Consensus        80 ~~d~vid~~g~   90 (202)
                      ++|++|.++|.
T Consensus        89 ~iD~lVnnAg~   99 (257)
T d1xg5a_          89 GVDICINNAGL   99 (257)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEecccc
Confidence            79999999984

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=3.7e-07  Score=65.03  Aligned_cols=82  Identities=18%  Similarity=0.218  Sum_probs=60.4

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~   80 (202)
                      -.|+++||+|+++++|..++..+...|++|+.+.+++++.++..+.+++.|.....   |   +++... ++.... -+.
T Consensus         5 l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~g~   84 (244)
T d1yb1a_           5 VTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGD   84 (244)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence            36899999999999999999999999999999999887655555666677655322   3   333333 333221 256


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|++++++|.
T Consensus        85 idilinnag~   94 (244)
T d1yb1a_          85 VSILVNNAGV   94 (244)
T ss_dssp             CSEEEECCCC
T ss_pred             CceeEeeccc
Confidence            9999999984

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=98.49  E-value=4.7e-07  Score=65.05  Aligned_cols=80  Identities=15%  Similarity=0.205  Sum_probs=60.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HH---HhhCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-IS---RDASIP   79 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~---~~~~~~   79 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.++++..++..+.+++.+.....   |   +++... +.   +.. +.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~-~g   83 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVF-DG   83 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT-TS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHh-CC
Confidence            6899999999999999999999999999999998887666666677777665433   3   333333 33   332 24


Q ss_pred             CCeEEEecCCC
Q psy2961          80 KPKLALNCVGG   90 (202)
Q Consensus        80 ~~d~vid~~g~   90 (202)
                      .+|+++.++|.
T Consensus        84 ~idilinnag~   94 (258)
T d1ae1a_          84 KLNILVNNAGV   94 (258)
T ss_dssp             CCCEEEECCCC
T ss_pred             CcEEEeccccc
Confidence            68999998874

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=98.48  E-value=8.5e-07  Score=63.46  Aligned_cols=103  Identities=17%  Similarity=0.195  Sum_probs=68.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.++++.   ..+..++++...+.   |   +.+... +.+... -+++
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~---~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i   81 (253)
T d1hxha_           5 QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAA---GQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTL   81 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHH---HHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH---HHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence            57999999999999999999999999998888876653   22334556654333   2   333333 222211 1579


Q ss_pred             eEEEecCCCch--------------------------HHHHHHhcc-cCcEEEEEeccCCC
Q psy2961          82 KLALNCVGGNS--------------------------ATNLLRTLV-SKGVMVTYGGMSRE  115 (202)
Q Consensus        82 d~vid~~g~~~--------------------------~~~~~~~l~-~~G~~v~~g~~~~~  115 (202)
                      |++++++|...                          ...+++.|+ .+|++|.++.....
T Consensus        82 DilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~~~  142 (253)
T d1hxha_          82 NVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSW  142 (253)
T ss_dssp             CEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGT
T ss_pred             CeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchhhh
Confidence            99999998420                          112344554 57999999866543

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.48  E-value=2.1e-07  Score=61.66  Aligned_cols=98  Identities=17%  Similarity=0.197  Sum_probs=69.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCc---eEeC-hhHHHhHHHhhCCCCCeEEE
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD---YVFT-EEELRNISRDASIPKPKLAL   85 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~---~v~~-~~~~~~~~~~~~~~~~d~vi   85 (202)
                      +.-+|+|+|+| .+|+.+++.|+.+|+.|.+...+.+    +++.++.....   .... .+.+.+   ..  ...|+||
T Consensus        31 ~pa~V~ViGaG-vaG~~A~~~A~~lGA~V~~~D~~~~----~l~~l~~~~~~~~~~~~~~~~~l~~---~~--~~aDivI  100 (168)
T d1pjca1          31 KPGKVVILGGG-VVGTEAAKMAVGLGAQVQIFDINVE----RLSYLETLFGSRVELLYSNSAEIET---AV--AEADLLI  100 (168)
T ss_dssp             CCCEEEEECCS-HHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHGGGSEEEECCHHHHHH---HH--HTCSEEE
T ss_pred             CCcEEEEECCC-hHHHHHHHHHhhCCCEEEEEeCcHH----HHHHHHHhhcccceeehhhhhhHHH---hh--ccCcEEE
Confidence            34689999999 9999999999999999999887765    56666654332   2222 333333   22  3579999


Q ss_pred             ecCCC-----ch--HHHHHHhcccCcEEEEEeccCCCCc
Q psy2961          86 NCVGG-----NS--ATNLLRTLVSKGVMVTYGGMSREPV  117 (202)
Q Consensus        86 d~~g~-----~~--~~~~~~~l~~~G~~v~~g~~~~~~~  117 (202)
                      .++--     |.  ..+.++.|++|..+|++....+...
T Consensus       101 ~aalipG~~aP~lIt~~mv~~Mk~GSVIVDvaidqGG~~  139 (168)
T d1pjca1         101 GAVLVPGRRAPILVPASLVEQMRTGSVIVDVAVDQGGCV  139 (168)
T ss_dssp             ECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTCTTCCSB
T ss_pred             EeeecCCcccCeeecHHHHhhcCCCcEEEEeecCCCCcc
Confidence            98832     22  2458899999999999986555433

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.48  E-value=1.7e-06  Score=62.56  Aligned_cols=104  Identities=19%  Similarity=0.273  Sum_probs=70.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCccc-HHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD-IDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~-~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~   80 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.++.++ .++..+.+++.|.+...   |   +++... +.+... .++
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   96 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFGK   96 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHHhCC
Confidence            48999999999999999999999999999888776543 22234455666665433   2   334433 332221 157


Q ss_pred             CeEEEecCCCch--------------------------HHHHHHhcccCcEEEEEeccC
Q psy2961          81 PKLALNCVGGNS--------------------------ATNLLRTLVSKGVMVTYGGMS  113 (202)
Q Consensus        81 ~d~vid~~g~~~--------------------------~~~~~~~l~~~G~~v~~g~~~  113 (202)
                      +|+++.+.|...                          ...++..|...|+++.++...
T Consensus        97 idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~  155 (272)
T d1g0oa_          97 LDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSIT  155 (272)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGG
T ss_pred             CCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccccccc
Confidence            999999887420                          122456778889988887544

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=98.47  E-value=5.3e-07  Score=64.74  Aligned_cols=80  Identities=16%  Similarity=0.221  Sum_probs=58.7

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCCCe
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPKPK   82 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~~d   82 (202)
                      |+.+||+|+++++|.++++.+...|++|+.+.++++..++..+.+++.|.+...   |   +++... +.+... -+++|
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD   81 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPVD   81 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhCCCC
Confidence            678899999999999999999999999999988877665556666777765332   2   344443 333221 25799


Q ss_pred             EEEecCCC
Q psy2961          83 LALNCVGG   90 (202)
Q Consensus        83 ~vid~~g~   90 (202)
                      ++|+++|.
T Consensus        82 ilVnnAG~   89 (257)
T d2rhca1          82 VLVNNAGR   89 (257)
T ss_dssp             EEEECCCC
T ss_pred             EEEecccc
Confidence            99999874

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=98.46  E-value=3.9e-07  Score=65.55  Aligned_cols=80  Identities=19%  Similarity=0.235  Sum_probs=57.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.++++..++..+.+++.|.+...   |   +++..+ +.+... -+++
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   83 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGKI   83 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            5899999999999999999999999999999888877655555566666654322   2   333333 322211 1579


Q ss_pred             eEEEecCC
Q psy2961          82 KLALNCVG   89 (202)
Q Consensus        82 d~vid~~g   89 (202)
                      |++|+++|
T Consensus        84 DilVnnaG   91 (260)
T d1zema1          84 DFLFNNAG   91 (260)
T ss_dssp             CEEEECCC
T ss_pred             Ceehhhhc
Confidence            99999887

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.45  E-value=5.3e-07  Score=64.79  Aligned_cols=81  Identities=16%  Similarity=0.209  Sum_probs=57.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC--CCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS--IPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~--~~~   80 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.++++..++..+.+++.+.....   |   +++... +.+...  ++.
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g~   86 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGGK   86 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHHhCCC
Confidence            5899999999999999999999999999999888877655555555555543221   3   333333 333222  245


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|++++++|.
T Consensus        87 idilvnnAG~   96 (259)
T d1xq1a_          87 LDILINNLGA   96 (259)
T ss_dssp             CSEEEEECCC
T ss_pred             cccccccccc
Confidence            9999999884

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.42  E-value=1.6e-07  Score=65.55  Aligned_cols=102  Identities=17%  Similarity=0.194  Sum_probs=72.6

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeC-hhHHHh-HHHhhCCCCC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT-EEELRN-ISRDASIPKP   81 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~-~~~~~~-~~~~~~~~~~   81 (202)
                      +..++++|++||..|+|  .|..++-+|+..|.+|+++...++-.....+.++++|.+.+.- ..|... ..   ....|
T Consensus        72 ~~L~l~~g~~VLeIGsG--sGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~---~~~pf  146 (215)
T d1jg1a_          72 EIANLKPGMNILEVGTG--SGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFP---PKAPY  146 (215)
T ss_dssp             HHHTCCTTCCEEEECCT--TSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG---GGCCE
T ss_pred             HhhccCccceEEEecCC--CChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCc---ccCcc
Confidence            45679999999999997  4888888898889888888877654444556667778665442 122222 11   12679


Q ss_pred             eEEEecCCCchHH-HHHHhcccCcEEEEEe
Q psy2961          82 KLALNCVGGNSAT-NLLRTLVSKGVMVTYG  110 (202)
Q Consensus        82 d~vid~~g~~~~~-~~~~~l~~~G~~v~~g  110 (202)
                      |.|+-+.+-+... .+++.|++||++|..-
T Consensus       147 D~Iiv~~a~~~ip~~l~~qL~~gGrLv~pv  176 (215)
T d1jg1a_         147 DVIIVTAGAPKIPEPLIEQLKIGGKLIIPV  176 (215)
T ss_dssp             EEEEECSBBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             eeEEeecccccCCHHHHHhcCCCCEEEEEE
Confidence            9998877666554 4889999999999853

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=98.38  E-value=1.3e-06  Score=62.80  Aligned_cols=81  Identities=17%  Similarity=0.281  Sum_probs=53.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCccc-HHHHHHHH-HhcCCceEe---C---hhHHHh-HHHhhC-CC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD-IDKLKSYL-KSLGADYVF---T---EEELRN-ISRDAS-IP   79 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~-~~~~~~~~-~~lg~~~v~---~---~~~~~~-~~~~~~-~~   79 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.++++. .++..+.+ ...|.....   |   +++..+ +.+... -+
T Consensus         3 ~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   82 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQMG   82 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHHS
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            68899999999999999999999999999888877532 22222233 234544322   2   334333 332211 15


Q ss_pred             CCeEEEecCCC
Q psy2961          80 KPKLALNCVGG   90 (202)
Q Consensus        80 ~~d~vid~~g~   90 (202)
                      ++|++|+++|.
T Consensus        83 ~iDiLVnnAG~   93 (260)
T d1x1ta1          83 RIDILVNNAGI   93 (260)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCcEEEeeccc
Confidence            79999999884

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=1.1e-06  Score=62.45  Aligned_cols=77  Identities=18%  Similarity=0.211  Sum_probs=53.6

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCc-eEe-C---hhHHHhHHHhhCCCCCeE
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD-YVF-T---EEELRNISRDASIPKPKL   83 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~-~v~-~---~~~~~~~~~~~~~~~~d~   83 (202)
                      -.|+++||+|+++++|.++++.+...|++|+.+.++++..   .+..++++.. .+. |   .++...+.+.+  +++|+
T Consensus         5 L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l---~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~--g~iDi   79 (244)
T d1pr9a_           5 LAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADL---DSLVRECPGIEPVCVDLGDWEATERALGSV--GPVDL   79 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHH---HHHHHHSTTCEEEECCTTCHHHHHHHHTTC--CCCCE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHH---HHHHHhcCCCeEEEEeCCCHHHHHHHHHHh--CCceE
Confidence            3789999999999999999999999999999988876532   2333445432 222 3   23333322222  57999


Q ss_pred             EEecCCC
Q psy2961          84 ALNCVGG   90 (202)
Q Consensus        84 vid~~g~   90 (202)
                      +|+++|.
T Consensus        80 lVnnAg~   86 (244)
T d1pr9a_          80 LVNNAAV   86 (244)
T ss_dssp             EEECCCC
T ss_pred             EEecccc
Confidence            9999874

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.37  E-value=1.2e-06  Score=62.17  Aligned_cols=75  Identities=19%  Similarity=0.218  Sum_probs=53.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCC-ceEe-C---hhHHHh-HHHhhCCCCCeE
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA-DYVF-T---EEELRN-ISRDASIPKPKL   83 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~-~~v~-~---~~~~~~-~~~~~~~~~~d~   83 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.+++++   ..+..++++. ..+. |   ++.... +.+.   +++|+
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~---l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~---g~iDi   77 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSD---LVSLAKECPGIEPVCVDLGDWDATEKALGGI---GPVDL   77 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH---HHHHHHHSTTCEEEECCTTCHHHHHHHHTTC---CCCSE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH---HHHHHHhcCCCeEEEEeCCCHHHHHHHHHHc---CCCeE
Confidence            58999999999999999999999999999998887653   2233345533 2222 3   233333 3322   57999


Q ss_pred             EEecCCC
Q psy2961          84 ALNCVGG   90 (202)
Q Consensus        84 vid~~g~   90 (202)
                      +|+++|.
T Consensus        78 lVnnAg~   84 (242)
T d1cyda_          78 LVNNAAL   84 (242)
T ss_dssp             EEECCCC
T ss_pred             EEECCcc
Confidence            9999873

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=98.36  E-value=6.7e-07  Score=64.56  Aligned_cols=80  Identities=19%  Similarity=0.255  Sum_probs=53.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe--C---hhHHHh-HHHhhC-CCCCe
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--T---EEELRN-ISRDAS-IPKPK   82 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~--~---~~~~~~-~~~~~~-~~~~d   82 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.++++..++..+.+...+....+  |   +++... +.+... -+.+|
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   84 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKLD   84 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHHcCCcc
Confidence            6899999999999999999999999999998887776433222333222222222  3   344433 332211 15799


Q ss_pred             EEEecCC
Q psy2961          83 LALNCVG   89 (202)
Q Consensus        83 ~vid~~g   89 (202)
                      ++|+++|
T Consensus        85 ~lVnnAG   91 (268)
T d2bgka1          85 IMFGNVG   91 (268)
T ss_dssp             EEEECCC
T ss_pred             eeccccc
Confidence            9999887

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=98.36  E-value=2.5e-06  Score=61.04  Aligned_cols=79  Identities=13%  Similarity=0.176  Sum_probs=52.3

Q ss_pred             CCCEEEEeCCCc--HHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe--C---hhHHHh----HHHhhCC
Q psy2961          10 PGDVVIQNGANS--ACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--T---EEELRN----ISRDASI   78 (202)
Q Consensus        10 ~g~~VlI~g~~~--~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~--~---~~~~~~----~~~~~~~   78 (202)
                      .|+++||+|++|  ++|.++++.+...|++|+.+.++++..++..+.....+....+  |   +++...    +.+..  
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~--   84 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAF--   84 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHH--
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHHHhc--
Confidence            589999999986  8999999999999999877766654322223333444443333  2   333333    23333  


Q ss_pred             CCCeEEEecCCC
Q psy2961          79 PKPKLALNCVGG   90 (202)
Q Consensus        79 ~~~d~vid~~g~   90 (202)
                      +++|++++++|.
T Consensus        85 g~iDilVnnag~   96 (256)
T d1ulua_          85 GGLDYLVHAIAF   96 (256)
T ss_dssp             SSEEEEEECCCC
T ss_pred             CCceEEEecccc
Confidence            579999998873

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.35  E-value=7e-07  Score=63.23  Aligned_cols=100  Identities=16%  Similarity=0.143  Sum_probs=64.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeC-hh---HHHh-HHHhhCCCCCeEE
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT-EE---ELRN-ISRDASIPKPKLA   84 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~-~~---~~~~-~~~~~~~~~~d~v   84 (202)
                      .|++|||+|+++++|.++++.+...|++|+.+...+++     +...........+ .+   .... +.+.....++|++
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~l   75 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENE-----EASASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDAI   75 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCT-----TSSEEEECCCCSCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccc-----cccccceeecccCcHHHHHHHHHHHHHHhCCCCceEE
Confidence            47899999999999999999999999999887665542     1111110110011 11   1223 4444455679999


Q ss_pred             EecCCCc------------h---------------HHHHHHhcccCcEEEEEeccCC
Q psy2961          85 LNCVGGN------------S---------------ATNLLRTLVSKGVMVTYGGMSR  114 (202)
Q Consensus        85 id~~g~~------------~---------------~~~~~~~l~~~G~~v~~g~~~~  114 (202)
                      |+++|.-            .               ...+++.|+.+|+++.++....
T Consensus        76 InnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~  132 (236)
T d1dhra_          76 LCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAA  132 (236)
T ss_dssp             EECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGG
T ss_pred             EECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHH
Confidence            9998731            0               1113556788999999986554

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=98.35  E-value=2.7e-06  Score=60.42  Aligned_cols=102  Identities=13%  Similarity=0.217  Sum_probs=66.0

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc-cHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCCCeE
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRD-DIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPKPKL   83 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~-~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~~d~   83 (202)
                      .|||+|+++++|.++++.+...|++|+....+++ ..++..+.+++.|.+...   |   +++... +.+... -+++|+
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi   82 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTIDV   82 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCCSE
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCCc
Confidence            6899999999999999999999999987765543 333334555666654322   2   334433 333221 257999


Q ss_pred             EEecCCCch--------------------------HHHHHHhc--ccCcEEEEEeccCC
Q psy2961          84 ALNCVGGNS--------------------------ATNLLRTL--VSKGVMVTYGGMSR  114 (202)
Q Consensus        84 vid~~g~~~--------------------------~~~~~~~l--~~~G~~v~~g~~~~  114 (202)
                      +++++|...                          ...+++.|  +.+|++|.++...+
T Consensus        83 LVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~  141 (244)
T d1edoa_          83 VVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVG  141 (244)
T ss_dssp             EEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHH
T ss_pred             cccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEcChhh
Confidence            999987420                          11234455  46799999986543

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=98.34  E-value=9.2e-07  Score=62.85  Aligned_cols=78  Identities=13%  Similarity=0.213  Sum_probs=55.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-C---hhHHHh-HHHhhC-CCCCeE
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-T---EEELRN-ISRDAS-IPKPKL   83 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~---~~~~~~-~~~~~~-~~~~d~   83 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.++++.   ..+..+++++..+. |   +++... +.+... -+++|+
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~---l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi   80 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGP---LREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDG   80 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH---HHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH---HHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHhcCCceE
Confidence            47999999999999999999999999999988877653   22334556665544 2   344333 322211 157999


Q ss_pred             EEecCCC
Q psy2961          84 ALNCVGG   90 (202)
Q Consensus        84 vid~~g~   90 (202)
                      +|+++|.
T Consensus        81 lVnnAG~   87 (242)
T d1ulsa_          81 VVHYAGI   87 (242)
T ss_dssp             EEECCCC
T ss_pred             EEECCcc
Confidence            9999874

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=98.33  E-value=1.3e-06  Score=62.72  Aligned_cols=81  Identities=19%  Similarity=0.296  Sum_probs=56.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCccc-HHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD-IDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~-~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~   80 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.+++++ .++..+.+++.|.+...   |   +++... +.+... -++
T Consensus         6 ~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~   85 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFGK   85 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            58999999999999999999999999999998887643 23334556667654332   2   333333 332211 157


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|++|+++|.
T Consensus        86 iDiLVnnAG~   95 (261)
T d1geea_          86 LDVMINNAGL   95 (261)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEeecccee
Confidence            9999999874

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=98.33  E-value=1.4e-06  Score=62.50  Aligned_cols=81  Identities=15%  Similarity=0.160  Sum_probs=57.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHH-HhcCCceEe---C---hhHHHh-HHHhhC-CCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGADYVF---T---EEELRN-ISRDAS-IPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~v~---~---~~~~~~-~~~~~~-~~~   80 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.++++...+..+.+ +++|.+...   |   +++... +.+... -++
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   87 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLGP   87 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHSCS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            4789999999999999999999999999999998887655444444 445654322   2   344433 333221 257


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|++|+++|.
T Consensus        88 iDilVnnAg~   97 (260)
T d1h5qa_          88 ISGLIANAGV   97 (260)
T ss_dssp             EEEEEECCCC
T ss_pred             CcEecccccc
Confidence            9999999873

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.33  E-value=1.8e-06  Score=61.85  Aligned_cols=79  Identities=14%  Similarity=0.157  Sum_probs=56.0

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCCCeE
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPKPKL   83 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~~d~   83 (202)
                      +.+||+|+++++|.++++.+...|++|+.+.++++..++..+.+++.|.+...   |   +++... +.+... -+++|+
T Consensus         2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi   81 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFDV   81 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCCE
T ss_pred             CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCccE
Confidence            35699999999999999998999999999888877655555666667654332   3   333333 333221 257999


Q ss_pred             EEecCCC
Q psy2961          84 ALNCVGG   90 (202)
Q Consensus        84 vid~~g~   90 (202)
                      +|+++|.
T Consensus        82 lVnnAG~   88 (255)
T d1gega_          82 IVNNAGV   88 (255)
T ss_dssp             EEECCCC
T ss_pred             EEecccc
Confidence            9999873

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=98.32  E-value=5.3e-06  Score=58.78  Aligned_cols=78  Identities=14%  Similarity=0.228  Sum_probs=55.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .|+++||+|+++++|.++++-+...|++|+.+.++.+.   ..+..++++.+...   |   +++..+ +.+... -+++
T Consensus         4 ~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~---~~~~~~~~~~~~~~~~~Dls~~~~i~~~~~~i~~~~g~i   80 (241)
T d2a4ka1           4 SGKTILVTGAASGIGRAALDLFAREGASLVAVDREERL---LAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRL   80 (241)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH---HHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH---HHHHHHHcCCceEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence            58999999999999999999999999999998887753   34455677765332   2   334333 322211 1579


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|.++|.
T Consensus        81 DiLinnAg~   89 (241)
T d2a4ka1          81 HGVAHFAGV   89 (241)
T ss_dssp             CEEEEGGGG
T ss_pred             cEecccccc
Confidence            999998863

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.31  E-value=5.5e-06  Score=60.69  Aligned_cols=81  Identities=17%  Similarity=0.173  Sum_probs=52.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCc---------ccHHHHHHHHHhcCCceEeC---hhHHHh-HHHhh
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR---------DDIDKLKSYLKSLGADYVFT---EEELRN-ISRDA   76 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~---------~~~~~~~~~~~~lg~~~v~~---~~~~~~-~~~~~   76 (202)
                      .|+++||+|+++++|.++++.+...|++|+....+.         +..++..+.+...+.....+   .++... +....
T Consensus         6 ~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~   85 (302)
T d1gz6a_           6 DGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVKTAL   85 (302)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHH
Confidence            589999999999999999999999999988874432         22222223334444444333   233333 33322


Q ss_pred             C-CCCCeEEEecCCC
Q psy2961          77 S-IPKPKLALNCVGG   90 (202)
Q Consensus        77 ~-~~~~d~vid~~g~   90 (202)
                      . -+++|++|+++|.
T Consensus        86 ~~~G~iDiLVnNAGi  100 (302)
T d1gz6a_          86 DTFGRIDVVVNNAGI  100 (302)
T ss_dssp             HHTSCCCEEEECCCC
T ss_pred             HHcCCCCEEEECCcc
Confidence            1 2579999999883

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.30  E-value=4.5e-06  Score=59.11  Aligned_cols=79  Identities=14%  Similarity=0.128  Sum_probs=52.1

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCc-------EEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLK-------TINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS   77 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~-------vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~   77 (202)
                      +.|||+|+++++|.++++.+...|++       ++...++.+..++..+.+++.|.....   |   +++... +.+...
T Consensus         2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~   81 (240)
T d2bd0a1           2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIVE   81 (240)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence            35799999999999999999899987       666666665544444455556654322   3   333333 332211


Q ss_pred             -CCCCeEEEecCCC
Q psy2961          78 -IPKPKLALNCVGG   90 (202)
Q Consensus        78 -~~~~d~vid~~g~   90 (202)
                       -+++|++++++|.
T Consensus        82 ~~g~iDilvnnAg~   95 (240)
T d2bd0a1          82 RYGHIDCLVNNAGV   95 (240)
T ss_dssp             HTSCCSEEEECCCC
T ss_pred             HcCCcceeeccccc
Confidence             2579999999884

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=98.30  E-value=1.1e-06  Score=62.95  Aligned_cols=78  Identities=17%  Similarity=0.191  Sum_probs=54.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.+++++   ..+.+++++.....   |   +++... +.+... -+++
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~---~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   80 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEE---GAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSV   80 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH---HHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHH---HHHHHHHhCCceEEEEcccCCHHHHHHHHHHHHHHcCCc
Confidence            58999999999999999999999999999888877653   33445666644222   2   334333 322211 1579


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|+++|.
T Consensus        81 DilVnnAg~   89 (254)
T d1hdca_          81 DGLVNNAGI   89 (254)
T ss_dssp             CEEEECCCC
T ss_pred             cEEEecCcc
Confidence            999999873

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.28  E-value=1.9e-06  Score=62.38  Aligned_cols=80  Identities=20%  Similarity=0.280  Sum_probs=56.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCc--eE----eC---hhHHHh-HHHhhC-C
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD--YV----FT---EEELRN-ISRDAS-I   78 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~--~v----~~---~~~~~~-~~~~~~-~   78 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.++++..++..+.+++.+..  .+    .|   +.+..+ +.+... -
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   82 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKF   82 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHHc
Confidence            5899999999999999999999999999999888876555445555555532  11    13   333333 332211 1


Q ss_pred             CCCeEEEecCC
Q psy2961          79 PKPKLALNCVG   89 (202)
Q Consensus        79 ~~~d~vid~~g   89 (202)
                      +.+|++++++|
T Consensus        83 G~iDilVnnAG   93 (274)
T d1xhla_          83 GKIDILVNNAG   93 (274)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCceEEEeecc
Confidence            57999999887

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=98.28  E-value=4.2e-06  Score=59.86  Aligned_cols=84  Identities=17%  Similarity=0.257  Sum_probs=55.6

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEE-EecCc---ccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHh
Q psy2961           7 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTIN-IVRNR---DDIDKLKSYLKSLGADYVF---T---EEELRN-ISRD   75 (202)
Q Consensus         7 ~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~-~~~~~---~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~   75 (202)
                      ..+|+.+|||+|+++++|.++++.+...|+++++ +.++.   +...+..+.+++.|....+   |   ..+... +...
T Consensus         5 ~~~p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~i   84 (259)
T d2fr1a1           5 EWKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGI   84 (259)
T ss_dssp             CCCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTS
T ss_pred             ccCCcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhccc
Confidence            5789999999999999999999988889996444 44432   2223334455666764332   2   334444 4333


Q ss_pred             hCCCCCeEEEecCCC
Q psy2961          76 ASIPKPKLALNCVGG   90 (202)
Q Consensus        76 ~~~~~~d~vid~~g~   90 (202)
                      ....++|.++.+.|.
T Consensus        85 ~~~~~i~~vv~~ag~   99 (259)
T d2fr1a1          85 GDDVPLSAVFHAAAT   99 (259)
T ss_dssp             CTTSCEEEEEECCCC
T ss_pred             ccccccccccccccc
Confidence            334568999998874

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.28  E-value=1.9e-06  Score=62.31  Aligned_cols=81  Identities=16%  Similarity=0.243  Sum_probs=56.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCc--eE----eC---hhHHHh-HHHhhC-C
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD--YV----FT---EEELRN-ISRDAS-I   78 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~--~v----~~---~~~~~~-~~~~~~-~   78 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.++++..++..+.+++.+..  .+    .|   +++... +.+... -
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~   83 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQF   83 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            4789999999999999999999999999999998877655555555555432  11    13   333333 332211 1


Q ss_pred             CCCeEEEecCCC
Q psy2961          79 PKPKLALNCVGG   90 (202)
Q Consensus        79 ~~~d~vid~~g~   90 (202)
                      +++|++|+++|.
T Consensus        84 g~iDilvnnAG~   95 (272)
T d1xkqa_          84 GKIDVLVNNAGA   95 (272)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCceEEEeCCcc
Confidence            579999999874

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=98.27  E-value=4.2e-06  Score=59.79  Aligned_cols=102  Identities=16%  Similarity=0.108  Sum_probs=66.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHh-cCCceEe----C----hhHHHh----HHHhh
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS-LGADYVF----T----EEELRN----ISRDA   76 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~-lg~~~v~----~----~~~~~~----~~~~~   76 (202)
                      .|++|||+|+++++|.+++..+...|++|+.++++.++.. ..+.++. .+...+.    |    ..+..+    +.+..
T Consensus         4 ~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~   82 (254)
T d1sbya1           4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPT-ALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL   82 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHH-HHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHH-HHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHHc
Confidence            4899999999999999999999999999999998877532 2333332 3322221    2    122322    33333


Q ss_pred             CCCCCeEEEecCCCch------------------HHHHHHhcc-----cCcEEEEEeccCC
Q psy2961          77 SIPKPKLALNCVGGNS------------------ATNLLRTLV-----SKGVMVTYGGMSR  114 (202)
Q Consensus        77 ~~~~~d~vid~~g~~~------------------~~~~~~~l~-----~~G~~v~~g~~~~  114 (202)
                        +++|++|.++|...                  ...+++.|.     ++|+++.++...+
T Consensus        83 --g~iDilvnnAG~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~  141 (254)
T d1sbya1          83 --KTVDILINGAGILDDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTG  141 (254)
T ss_dssp             --SCCCEEEECCCCCCTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGG
T ss_pred             --CCCCEEEeCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhh
Confidence              57999999998531                  111344442     3689998876554

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=98.27  E-value=3.1e-06  Score=60.25  Aligned_cols=79  Identities=10%  Similarity=0.101  Sum_probs=56.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.+++++  +..+.++++|.....   |   +++... +.+... -+++
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~--~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~i   81 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAP--EAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRC   81 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCH--HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchH--HHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence            47899999999999999999999999999888876653  234555677765332   2   333333 332221 1579


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|+++|.
T Consensus        82 DilVnnAG~   90 (247)
T d2ew8a1          82 DILVNNAGI   90 (247)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999884

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=98.27  E-value=1.4e-06  Score=62.28  Aligned_cols=79  Identities=18%  Similarity=0.129  Sum_probs=52.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe--C---hhHHHh----HHHhhCCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--T---EEELRN----ISRDASIPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~--~---~~~~~~----~~~~~~~~~   80 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.++++..++..+.+..-+....+  |   +++...    +.+.+  ++
T Consensus         5 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~--G~   82 (251)
T d1zk4a1           5 DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAF--GP   82 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHH--SS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHHh--CC
Confidence            5899999999999999999999999999998887765422222222211111112  2   333333    33333  57


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|++|+++|.
T Consensus        83 iDiLVnnAg~   92 (251)
T d1zk4a1          83 VSTLVNNAGI   92 (251)
T ss_dssp             CCEEEECCCC
T ss_pred             ceEEEecccc
Confidence            9999999874

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=98.27  E-value=1.1e-06  Score=62.90  Aligned_cols=78  Identities=9%  Similarity=0.096  Sum_probs=55.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.++.+.   ..+.++++|.....   |   +++... +.+... -+++
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~---l~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~i   80 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVREGARVAIADINLEA---ARATAAEIGPAACAIALDVTDQASIDRCVAELLDRWGSI   80 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHH---HHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH---HHHHHHHhCCceEEEEeeCCCHHHHHHHHHHHHHHhCCc
Confidence            47899999999999999999999999999888877653   23444667654332   3   333333 332211 1579


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++|+++|.
T Consensus        81 DilVnnAg~   89 (256)
T d1k2wa_          81 DILVNNAAL   89 (256)
T ss_dssp             CEEEECCCC
T ss_pred             cEEEeeccc
Confidence            999999883

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.26  E-value=8.3e-07  Score=61.85  Aligned_cols=101  Identities=17%  Similarity=0.233  Sum_probs=67.2

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCC--cEEEEecCcccHHHHHHHHHhcCCceEeC-hhHHHh-HHHhhCCC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGL--KTINIVRNRDDIDKLKSYLKSLGADYVFT-EEELRN-ISRDASIP   79 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~--~vi~~~~~~~~~~~~~~~~~~lg~~~v~~-~~~~~~-~~~~~~~~   79 (202)
                      +..++++|++||-.|+|+  |..++.+|+..|.  +|+++..+++......+.++..+.+.+.- ..|..+ ..   ...
T Consensus        69 ~~l~l~~g~~VLdiG~Gt--G~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~---~~~  143 (213)
T d1dl5a1          69 EWVGLDKGMRVLEIGGGT--GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP---EFS  143 (213)
T ss_dssp             HHTTCCTTCEEEEECCTT--SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG---GGC
T ss_pred             HhhhccccceEEEecCcc--chhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccc---ccc
Confidence            456799999999999874  8888889998764  67777666654333344445555543331 112111 11   125


Q ss_pred             CCeEEEecCCCchHH-HHHHhcccCcEEEEE
Q psy2961          80 KPKLALNCVGGNSAT-NLLRTLVSKGVMVTY  109 (202)
Q Consensus        80 ~~d~vid~~g~~~~~-~~~~~l~~~G~~v~~  109 (202)
                      .||+|+.+.+-+... .+++.|+|||+++..
T Consensus       144 ~fD~I~~~~~~~~~p~~l~~~LkpGG~lv~p  174 (213)
T d1dl5a1         144 PYDVIFVTVGVDEVPETWFTQLKEGGRVIVP  174 (213)
T ss_dssp             CEEEEEECSBBSCCCHHHHHHEEEEEEEEEE
T ss_pred             chhhhhhhccHHHhHHHHHHhcCCCcEEEEE
Confidence            699999877665553 478999999999874

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.25  E-value=2.3e-06  Score=60.82  Aligned_cols=78  Identities=13%  Similarity=0.152  Sum_probs=53.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.+++++.   .+..++++.....   |   +++..+ +.+... -+++
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   81 (244)
T d1nffa_           5 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEG---KAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGL   81 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH---HHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHH---HHHHHHhhCcceEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence            579999999999999999999999999999888777532   2333455433221   2   334333 333221 1579


Q ss_pred             eEEEecCCC
Q psy2961          82 KLALNCVGG   90 (202)
Q Consensus        82 d~vid~~g~   90 (202)
                      |++++++|.
T Consensus        82 dilinnAG~   90 (244)
T d1nffa_          82 HVLVNNAGI   90 (244)
T ss_dssp             CEEEECCCC
T ss_pred             eEEEECCcc
Confidence            999999984

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.25  E-value=2.5e-06  Score=61.37  Aligned_cols=81  Identities=16%  Similarity=0.251  Sum_probs=56.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCc--eE--e--C---hhHHHh-HHHhhC-C
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD--YV--F--T---EEELRN-ISRDAS-I   78 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~--~v--~--~---~~~~~~-~~~~~~-~   78 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.++++..++..+.+++.+..  .+  +  |   +++... +.+... -
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   83 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKF   83 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            5789999999999999999999999999999888877655555555555432  11  1  2   333333 332211 1


Q ss_pred             CCCeEEEecCCC
Q psy2961          79 PKPKLALNCVGG   90 (202)
Q Consensus        79 ~~~d~vid~~g~   90 (202)
                      +++|++|+++|.
T Consensus        84 g~iDilvnnAG~   95 (264)
T d1spxa_          84 GKLDILVNNAGA   95 (264)
T ss_dssp             SCCCEEEECCC-
T ss_pred             CCCCEeeccccc
Confidence            579999999873

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=98.24  E-value=2.8e-06  Score=61.98  Aligned_cols=81  Identities=16%  Similarity=0.290  Sum_probs=55.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHH-HhcCCceEe---C---hhHHHh-HHHhh-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGADYVF---T---EEELRN-ISRDA-SIPK   80 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~v~---~---~~~~~~-~~~~~-~~~~   80 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.++++..++..+.+ .+.|.....   |   .++... +.... ...+
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g~  103 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAGH  103 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhhhccc
Confidence            5799999999999999999999999999999998877544444444 334443222   2   233333 22221 1367


Q ss_pred             CeEEEecCCC
Q psy2961          81 PKLALNCVGG   90 (202)
Q Consensus        81 ~d~vid~~g~   90 (202)
                      +|++++++|.
T Consensus       104 iDilvnnAg~  113 (294)
T d1w6ua_         104 PNIVINNAAG  113 (294)
T ss_dssp             CSEEEECCCC
T ss_pred             cchhhhhhhh
Confidence            9999999884

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=98.24  E-value=2.3e-06  Score=61.31  Aligned_cols=80  Identities=15%  Similarity=0.172  Sum_probs=54.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcC--CceE---eC---hhHHHh-HHHhhC-CC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG--ADYV---FT---EEELRN-ISRDAS-IP   79 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg--~~~v---~~---~~~~~~-~~~~~~-~~   79 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.++++..++..+.+.+.+  ...+   .|   +++... +.+... -+
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~G   82 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFG   82 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHhC
Confidence            47899999999999999999999999999988888765444344443332  2211   13   334333 222211 15


Q ss_pred             CCeEEEecCC
Q psy2961          80 KPKLALNCVG   89 (202)
Q Consensus        80 ~~d~vid~~g   89 (202)
                      ++|++|+++|
T Consensus        83 ~iDiLVnnAG   92 (258)
T d1iy8a_          83 RIDGFFNNAG   92 (258)
T ss_dssp             CCSEEEECCC
T ss_pred             CCCEEEECCc
Confidence            7999999887

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=2.1e-06  Score=61.36  Aligned_cols=105  Identities=16%  Similarity=0.212  Sum_probs=67.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhc-CCceE----eC---hhHHHh-HHHhhC-CC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL-GADYV----FT---EEELRN-ISRDAS-IP   79 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~l-g~~~v----~~---~~~~~~-~~~~~~-~~   79 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.++.+..++..+.+.+. +...+    .|   +++..+ +.+... -+
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   81 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG   81 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            5899999999999999999999999999999888876544333444332 22111    13   333333 332211 15


Q ss_pred             CCeEEEecCCCch------------------HHHHHHhcc-----cCcEEEEEeccCC
Q psy2961          80 KPKLALNCVGGNS------------------ATNLLRTLV-----SKGVMVTYGGMSR  114 (202)
Q Consensus        80 ~~d~vid~~g~~~------------------~~~~~~~l~-----~~G~~v~~g~~~~  114 (202)
                      ++|++|+++|...                  ...+++.|.     .+|++|.++...+
T Consensus        82 ~iDilVnnAg~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~  139 (254)
T d2gdza1          82 RLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAG  139 (254)
T ss_dssp             CCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGG
T ss_pred             CcCeecccccccccccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhh
Confidence            7999999998431                  111334443     2589999886554

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=4.2e-06  Score=59.64  Aligned_cols=76  Identities=16%  Similarity=0.304  Sum_probs=52.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHH-HhcCCceEe--C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGADYVF--T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~v~--~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.++++    +.+.+ ++++....+  |   +++... +.+... -+++
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~----~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i   80 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDES----GGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRL   80 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHhcCCCeEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence            5899999999999999999999999999988877665    34444 344432222  2   344333 333221 1579


Q ss_pred             eEEEecCC
Q psy2961          82 KLALNCVG   89 (202)
Q Consensus        82 d~vid~~g   89 (202)
                      |++|+++|
T Consensus        81 DilVnnAG   88 (250)
T d1ydea1          81 DCVVNNAG   88 (250)
T ss_dssp             CEEEECCC
T ss_pred             CEEEeccc
Confidence            99999887

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=98.19  E-value=2.2e-06  Score=62.09  Aligned_cols=77  Identities=17%  Similarity=0.223  Sum_probs=53.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe---C---hhHHHh-HHHhhC-CCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDAS-IPKP   81 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~~~~~-~~~~~~-~~~~   81 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.++++.+   .+..++++.....   |   +++... +.+... -+.+
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l---~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i   80 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERL---AELETDHGDNVLGIVGDVRSLEDQKQAASRCVARFGKI   80 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH---HHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHH---HHHHHHcCCCeeEEecccccHHHHHHHHHHHHHHhCCc
Confidence            589999999999999999999999999999988776532   2333455543222   2   333333 222211 1579


Q ss_pred             eEEEecCC
Q psy2961          82 KLALNCVG   89 (202)
Q Consensus        82 d~vid~~g   89 (202)
                      |++++++|
T Consensus        81 dilvnnAG   88 (276)
T d1bdba_          81 DTLIPNAG   88 (276)
T ss_dssp             CEEECCCC
T ss_pred             cccccccc
Confidence            99999887

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=6.3e-06  Score=60.20  Aligned_cols=82  Identities=22%  Similarity=0.336  Sum_probs=55.9

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHh-c----CCceEe---C---hhHHHh-HHHhh
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS-L----GADYVF---T---EEELRN-ISRDA   76 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~-l----g~~~v~---~---~~~~~~-~~~~~   76 (202)
                      -.|+++||+|+++++|.++++.+...|++|+.+.++.+..++..+.+++ +    +...+.   |   +++... +.+..
T Consensus        10 L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~   89 (297)
T d1yxma1          10 LQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTL   89 (297)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHHH
Confidence            4789999999999999999999999999999998887654444444432 1    222221   2   334333 33322


Q ss_pred             C-CCCCeEEEecCCC
Q psy2961          77 S-IPKPKLALNCVGG   90 (202)
Q Consensus        77 ~-~~~~d~vid~~g~   90 (202)
                      . -+++|++|+++|.
T Consensus        90 ~~~G~iDiLVnnAg~  104 (297)
T d1yxma1          90 DTFGKINFLVNNGGG  104 (297)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HHhCCeEEEEeeccc
Confidence            1 1579999999874

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.17  E-value=5.6e-06  Score=58.39  Aligned_cols=72  Identities=21%  Similarity=0.270  Sum_probs=52.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-Ch-hHHHhHHHhhCCCCCeEEEec
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TE-EELRNISRDASIPKPKLALNC   87 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~-~~~~~~~~~~~~~~~d~vid~   87 (202)
                      +|+++||+|+++++|.++++.+...|++|+.+.+++       +.+++.+...+. |- ++...+.+..  +.+|+++++
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~-------~~l~~~~~~~~~~Dv~~~~~~~~~~~--g~iD~lVnn   73 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE-------ELLKRSGHRYVVCDLRKDLDLLFEKV--KEVDILVLN   73 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH-------HHHHHTCSEEEECCTTTCHHHHHHHS--CCCSEEEEC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH-------HHHHhcCCcEEEcchHHHHHHHHHHh--CCCcEEEec
Confidence            578999999999999999999999999988887664       345556655444 32 2233333333  579999999


Q ss_pred             CCC
Q psy2961          88 VGG   90 (202)
Q Consensus        88 ~g~   90 (202)
                      +|.
T Consensus        74 AG~   76 (234)
T d1o5ia_          74 AGG   76 (234)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            874

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=9.8e-06  Score=58.30  Aligned_cols=80  Identities=16%  Similarity=0.137  Sum_probs=53.2

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhc-CCceEe---C---hhHHH---h-HHHhhC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL-GADYVF---T---EEELR---N-ISRDAS   77 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~l-g~~~v~---~---~~~~~---~-~~~~~~   77 (202)
                      -.|+++||+||++|+|.++++.+...|++|+.+.++.+..++..+.+... +.....   +   .....   + +.+.. 
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-   90 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLM-   90 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHHh-
Confidence            47899999999999999999999999999999999887544433333333 332211   2   11221   2 22222 


Q ss_pred             CCCCeEEEecCCC
Q psy2961          78 IPKPKLALNCVGG   90 (202)
Q Consensus        78 ~~~~d~vid~~g~   90 (202)
                       +..|+++.+.|.
T Consensus        91 -g~~~~li~nag~  102 (269)
T d1xu9a_          91 -GGLDMLILNHIT  102 (269)
T ss_dssp             -TSCSEEEECCCC
T ss_pred             -CCcccccccccc
Confidence             568888887763

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.11  E-value=2.4e-06  Score=60.29  Aligned_cols=98  Identities=18%  Similarity=0.183  Sum_probs=61.8

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcC-CceEeC-hhH---HHh-HHHhhCCCCCeEE
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG-ADYVFT-EEE---LRN-ISRDASIPKPKLA   84 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg-~~~v~~-~~~---~~~-~~~~~~~~~~d~v   84 (202)
                      +.+|||+|+++++|.++++.+...|++|+.+.++++.      ...... .....+ .++   ..+ +......+.+|++
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iD~l   75 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAND------QADSNILVDGNKNWTEQEQSILEQTASSLQGSQVDGV   75 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCT------TSSEEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchh------cccccceeccccCchhHHHHHHHHHHHHhcCCCeeEE
Confidence            3478999999999999999999999999988776642      111000 000001 111   122 3333445679999


Q ss_pred             EecCCCc------------h---------------HHHHHHhcccCcEEEEEeccCC
Q psy2961          85 LNCVGGN------------S---------------ATNLLRTLVSKGVMVTYGGMSR  114 (202)
Q Consensus        85 id~~g~~------------~---------------~~~~~~~l~~~G~~v~~g~~~~  114 (202)
                      |+++|..            .               ....+..|+++|+++.++....
T Consensus        76 innAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~  132 (235)
T d1ooea_          76 FCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAA  132 (235)
T ss_dssp             EECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGG
T ss_pred             EECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHh
Confidence            9998731            0               1113556788999999986543

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.10  E-value=7.6e-06  Score=59.50  Aligned_cols=102  Identities=10%  Similarity=0.104  Sum_probs=69.2

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeC--hhHHHhHHHhhCCC
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT--EEELRNISRDASIP   79 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~--~~~~~~~~~~~~~~   79 (202)
                      +.+..++++|++||=+|+|  .|..+..+|+..|++|++++-++++.....+.+++.|....+.  ..+.   .  ....
T Consensus        53 ~~~~l~l~~G~~VLDiGCG--~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~---~--~~~~  125 (291)
T d1kpia_          53 ALDKLNLEPGMTLLDIGCG--WGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGW---E--EFDE  125 (291)
T ss_dssp             HHHTTCCCTTCEEEEETCT--TSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCG---G--GCCC
T ss_pred             HHHhcCCCCCCEEEEecCc--chHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhcc---c--cccc
Confidence            3467889999999999997  5777889999999999999988876544455566666543221  1111   0  1125


Q ss_pred             CCeEEEec-----CCCc-----------hHHHHHHhcccCcEEEEEe
Q psy2961          80 KPKLALNC-----VGGN-----------SATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        80 ~~d~vid~-----~g~~-----------~~~~~~~~l~~~G~~v~~g  110 (202)
                      .||.|+..     ++..           .+..+.++|+|||++++-.
T Consensus       126 ~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~  172 (291)
T d1kpia_         126 PVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT  172 (291)
T ss_dssp             CCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred             ccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence            68887642     2321           1334778999999998754

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.10  E-value=6.9e-06  Score=58.44  Aligned_cols=76  Identities=22%  Similarity=0.240  Sum_probs=50.8

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--cEEEEecCcccHHHHHHHHHhcC-Cc-eEe--C---hhHH---Hh-HHHhhC
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGL--KTINIVRNRDDIDKLKSYLKSLG-AD-YVF--T---EEEL---RN-ISRDAS   77 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~--~vi~~~~~~~~~~~~~~~~~~lg-~~-~v~--~---~~~~---~~-~~~~~~   77 (202)
                      .++|||+||++|+|.++++.+...|+  +|+.++++.+.    .+.+++.. .. .++  |   .++.   .+ +.+..+
T Consensus         3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~----~~~l~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~   78 (250)
T d1yo6a1           3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEK----ATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVG   78 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGG----CHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHG
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHH----HHHHHHhhCCceEEEEEecCCHHHHHHHHHHHHHHhC
Confidence            37999999999999999988888886  57777777653    45555543 22 111  3   2233   23 444444


Q ss_pred             CCCCeEEEecCCC
Q psy2961          78 IPKPKLALNCVGG   90 (202)
Q Consensus        78 ~~~~d~vid~~g~   90 (202)
                      ..++|++|+++|.
T Consensus        79 ~~~idilinnAG~   91 (250)
T d1yo6a1          79 SDGLSLLINNAGV   91 (250)
T ss_dssp             GGCCCEEEECCCC
T ss_pred             CCCeEEEEEcCcc
Confidence            4569999999983

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=7.4e-06  Score=58.16  Aligned_cols=75  Identities=19%  Similarity=0.193  Sum_probs=53.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHh-cCCceEe-C--hhHHHh-HHHhhCCCCCeEE
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS-LGADYVF-T--EEELRN-ISRDASIPKPKLA   84 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~-lg~~~v~-~--~~~~~~-~~~~~~~~~~d~v   84 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.++++    +.+.+.+ .+..... |  ..+..+ ..+..  .++|++
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~----~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~id~l   78 (245)
T d2ag5a1           5 DGKVIILTAAAQGIGQAAALAFAREGAKVIATDINES----KLQELEKYPGIQTRVLDVTKKKQIDQFANEV--ERLDVL   78 (245)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHGGGGGSTTEEEEECCTTCHHHHHHHHHHC--SCCSEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHhccCCceeeeecccccccccccccc--ccceeE
Confidence            5799999999999999999999999999999988765    3444433 3433322 2  123333 33333  579999


Q ss_pred             EecCCC
Q psy2961          85 LNCVGG   90 (202)
Q Consensus        85 id~~g~   90 (202)
                      +++.|.
T Consensus        79 Vn~ag~   84 (245)
T d2ag5a1          79 FNVAGF   84 (245)
T ss_dssp             EECCCC
T ss_pred             Eecccc
Confidence            999874

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=3e-06  Score=58.48  Aligned_cols=95  Identities=14%  Similarity=0.159  Sum_probs=63.4

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCCCeEEEecCC
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNCVG   89 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~vid~~g   89 (202)
                      .++|+|+||+|.+|..++..+...|.+|+++++++++    .......+.+.+. |..+...+.+..  .+.|+||.++|
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~----~~~~~~~~~~~~~gD~~d~~~l~~al--~~~d~vi~~~g   76 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSR----LPSEGPRPAHVVVGDVLQAADVDKTV--AGQDAVIVLLG   76 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGG----SCSSSCCCSEEEESCTTSHHHHHHHH--TTCSEEEECCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhh----cccccccccccccccccchhhHHHHh--cCCCEEEEEec
Confidence            4689999999999999999888999999999988763    3333334444444 334433344444  46899999987


Q ss_pred             Cch-----------HHHHHHhcccC--cEEEEEec
Q psy2961          90 GNS-----------ATNLLRTLVSK--GVMVTYGG  111 (202)
Q Consensus        90 ~~~-----------~~~~~~~l~~~--G~~v~~g~  111 (202)
                      ...           ...+++.++..  .+++.++.
T Consensus        77 ~~~~~~~~~~~~~~~~~l~~aa~~~~v~r~i~~ss  111 (205)
T d1hdoa_          77 TRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTS  111 (205)
T ss_dssp             CTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             cCCchhhhhhhHHHHHHHHHHHHhcCCCeEEEEee
Confidence            531           12245555443  37777764

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.04  E-value=1.3e-05  Score=58.16  Aligned_cols=102  Identities=11%  Similarity=0.153  Sum_probs=67.2

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe--ChhHHHhHHHhhCCC
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--TEEELRNISRDASIP   79 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~--~~~~~~~~~~~~~~~   79 (202)
                      |.+..+++||++||=+|+|  .|..++.+|+..|++|++++-++++.+...+.+++.|...-+  ...|..   . . ..
T Consensus        54 ~~~~l~l~~G~~VLDiGCG--~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~---~-~-~~  126 (285)
T d1kpga_          54 ALGKLGLQPGMTLLDVGCG--WGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWE---Q-F-DE  126 (285)
T ss_dssp             HHTTTTCCTTCEEEEETCT--TSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGG---G-C-CC
T ss_pred             HHHHcCCCCCCEEEEecCc--chHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhh---c-c-cc
Confidence            4467889999999999996  689999999999999999999988644333444444432111  111111   1 1 14


Q ss_pred             CCeEEEe-----cCCCch----HHHHHHhcccCcEEEEEe
Q psy2961          80 KPKLALN-----CVGGNS----ATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        80 ~~d~vid-----~~g~~~----~~~~~~~l~~~G~~v~~g  110 (202)
                      .+|.|+.     .++...    +..+.++|+|+|++++..
T Consensus       127 ~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~  166 (285)
T d1kpga_         127 PVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHT  166 (285)
T ss_dssp             CCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             cccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEE
Confidence            6777654     333331    233678999999998744

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.03  E-value=1.3e-05  Score=56.98  Aligned_cols=78  Identities=14%  Similarity=0.193  Sum_probs=50.4

Q ss_pred             CEEEEeCCCcHHHHHHHHHHH---HCCCcEEEEecCcccHHHHHHHHHhcCCceEe--C---hhHHHh----HHHhhCCC
Q psy2961          12 DVVIQNGANSACGQNVIQIAR---HWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--T---EEELRN----ISRDASIP   79 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~---~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~--~---~~~~~~----~~~~~~~~   79 (202)
                      ++|||+|+++|+|.++++.+.   ..|++|+.++++++..++..+..+..+--.++  |   .++...    +.+.....
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~~   82 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVTKDQ   82 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHHGGG
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhcCCcEEEEEEEeccHHHHHHHHhhhHHHhhcC
Confidence            589999999999999886553   46899999999887654333333332222222  2   333333    33333446


Q ss_pred             CCeEEEecCC
Q psy2961          80 KPKLALNCVG   89 (202)
Q Consensus        80 ~~d~vid~~g   89 (202)
                      ++|++|+++|
T Consensus        83 ~iDiLvnNAg   92 (248)
T d1snya_          83 GLNVLFNNAG   92 (248)
T ss_dssp             CCSEEEECCC
T ss_pred             CcceEEeecc
Confidence            7999999887

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.03  E-value=7e-06  Score=57.35  Aligned_cols=96  Identities=16%  Similarity=0.081  Sum_probs=61.8

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhc----CCceEeChhHHHh-HHHhhCC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL----GADYVFTEEELRN-ISRDASI   78 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~l----g~~~v~~~~~~~~-~~~~~~~   78 (202)
                      +..++++|++||-.|+|+  |..++.+|+. +.+|+++-..++    ..+.+++.    ....++ ..|... ..+   .
T Consensus        64 ~~L~l~~g~~VLdIG~Gs--Gy~ta~La~l-~~~V~aiE~~~~----~~~~A~~~~~~~~nv~~~-~~d~~~g~~~---~  132 (224)
T d1vbfa_          64 DELDLHKGQKVLEIGTGI--GYYTALIAEI-VDKVVSVEINEK----MYNYASKLLSYYNNIKLI-LGDGTLGYEE---E  132 (224)
T ss_dssp             HHTTCCTTCEEEEECCTT--SHHHHHHHHH-SSEEEEEESCHH----HHHHHHHHHTTCSSEEEE-ESCGGGCCGG---G
T ss_pred             HHhhhcccceEEEecCCC--CHHHHHHHHH-hcccccccccHH----HHHHHHHHHhcccccccc-cCchhhcchh---h
Confidence            456899999999999974  6777777775 567888776655    34444332    111121 112111 111   2


Q ss_pred             CCCeEEEecCCCchHHH-HHHhcccCcEEEEEe
Q psy2961          79 PKPKLALNCVGGNSATN-LLRTLVSKGVMVTYG  110 (202)
Q Consensus        79 ~~~d~vid~~g~~~~~~-~~~~l~~~G~~v~~g  110 (202)
                      ..||.|+-+.+-+.... +++.|++||++|...
T Consensus       133 ~pfD~Iiv~~a~~~ip~~l~~qLk~GGrLV~pv  165 (224)
T d1vbfa_         133 KPYDRVVVWATAPTLLCKPYEQLKEGGIMILPI  165 (224)
T ss_dssp             CCEEEEEESSBBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             hhHHHHHhhcchhhhhHHHHHhcCCCCEEEEEE
Confidence            56999887666555544 789999999999864

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.97  E-value=1.4e-05  Score=53.34  Aligned_cols=98  Identities=11%  Similarity=0.062  Sum_probs=57.3

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEE
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLA   84 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~v   84 (202)
                      ..-..+|++|+|+|+| |.+.+++..+...|++++.+.|+.++.++..+.....+....+...+       .....+|++
T Consensus        12 ~~~~~~~k~vlIlGaG-Gaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~-------~~~~~~dli   83 (170)
T d1nyta1          12 LSFIRPGLRILLIGAG-GASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDE-------LEGHEFDLI   83 (170)
T ss_dssp             HTCCCTTCEEEEECCS-HHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGG-------GTTCCCSEE
T ss_pred             cCCCCCCCEEEEECCc-HHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhccccccccccc-------cccccccee
Confidence            3334578999999999 88999999888999986666666553111111122222222222211       112568999


Q ss_pred             EecCCCchHHH----HHHhcccCcEEEEEe
Q psy2961          85 LNCVGGNSATN----LLRTLVSKGVMVTYG  110 (202)
Q Consensus        85 id~~g~~~~~~----~~~~l~~~G~~v~~g  110 (202)
                      |+|+.-.....    ....+.++..++.+.
T Consensus        84 IN~Tp~G~~~~~~~~~~~~~~~~~~v~D~v  113 (170)
T d1nyta1          84 INATSSGISGDIPAIPSSLIHPGIYCYDMF  113 (170)
T ss_dssp             EECCSCGGGTCCCCCCGGGCCTTCEEEESC
T ss_pred             ecccccCcccCCCCCcHHHhccCcEEEEee
Confidence            99986432211    234566666665554

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.95  E-value=2.3e-05  Score=56.63  Aligned_cols=101  Identities=12%  Similarity=0.197  Sum_probs=66.7

Q ss_pred             ccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeC--hhHHHhHHHhhCCCC
Q psy2961           3 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT--EEELRNISRDASIPK   80 (202)
Q Consensus         3 ~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~--~~~~~~~~~~~~~~~   80 (202)
                      .+..+++||++||=+|+|  .|..+..+++..|++|+++.-++++.+...+.+++.|....+.  ..+..   . . ...
T Consensus        45 ~~~l~l~~g~~VLDiGCG--~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~---~-~-~~~  117 (280)
T d2fk8a1          45 LDKLDLKPGMTLLDIGCG--WGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWE---D-F-AEP  117 (280)
T ss_dssp             HTTSCCCTTCEEEEESCT--TSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGG---G-C-CCC
T ss_pred             HHHcCCCCCCEEEEecCC--chHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhh---h-h-ccc
Confidence            356689999999999997  4567788899999999999998886544445555556432221  11111   1 1 246


Q ss_pred             CeEEEe-----cCCCch----HHHHHHhcccCcEEEEEe
Q psy2961          81 PKLALN-----CVGGNS----ATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        81 ~d~vid-----~~g~~~----~~~~~~~l~~~G~~v~~g  110 (202)
                      +|.|+-     -++...    +..+.++|+|+|+++.-.
T Consensus       118 fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~  156 (280)
T d2fk8a1         118 VDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQS  156 (280)
T ss_dssp             CSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             hhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEE
Confidence            888753     233332    234678999999998744

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.93  E-value=8.3e-06  Score=58.13  Aligned_cols=76  Identities=9%  Similarity=0.021  Sum_probs=51.2

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHH---h-HHHhhCCCCCeEEEec
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELR---N-ISRDASIPKPKLALNC   87 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~---~-~~~~~~~~~~d~vid~   87 (202)
                      .|+||+|+++++|.++++.+...|++|+.+.++.+..++............+.+.++..   + +.+.+  +++|++|++
T Consensus         1 ~TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~~~~~~--G~iDiLVnN   78 (252)
T d1zmta1           1 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYPQLKPMSEQEPAELIEAVTSAY--GQVDVLVSN   78 (252)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHCTTSEECCCCSHHHHHHHHHHHH--SCCCEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhhhCcEEEeccCCHHHHHHHHHHHHHHc--CCCCEEEEC
Confidence            37899999999999999999999999888877766543322222333333344444333   3 33333  579999987


Q ss_pred             CC
Q psy2961          88 VG   89 (202)
Q Consensus        88 ~g   89 (202)
                      +|
T Consensus        79 Ag   80 (252)
T d1zmta1          79 DI   80 (252)
T ss_dssp             CC
T ss_pred             Cc
Confidence            65

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=97.92  E-value=1.7e-05  Score=56.28  Aligned_cols=103  Identities=15%  Similarity=0.105  Sum_probs=63.2

Q ss_pred             ccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCC--cEEEEecCcccHHHHHHHHHhcC-CceEe-ChhHHHhHHHhhCC
Q psy2961           3 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGL--KTINIVRNRDDIDKLKSYLKSLG-ADYVF-TEEELRNISRDASI   78 (202)
Q Consensus         3 ~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~--~vi~~~~~~~~~~~~~~~~~~lg-~~~v~-~~~~~~~~~~~~~~   78 (202)
                      ..+.+++||++||=.|+|+  |.+++.+|+..|.  +|+++-.+++..+...+.+++++ ...+- ...|.   .+....
T Consensus        78 i~~l~i~pG~rVLEiG~Gs--G~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di---~~~~~~  152 (250)
T d1yb2a1          78 IMRCGLRPGMDILEVGVGS--GNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDI---ADFISD  152 (250)
T ss_dssp             ---CCCCTTCEEEEECCTT--SHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCT---TTCCCS
T ss_pred             HHHcCCCCcCEEEEeeeeC--cHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeee---eccccc
Confidence            3467899999999999874  7888889987654  67777666553222233333433 22221 11222   222334


Q ss_pred             CCCeEEEecCCCc--hHHHHHHhcccCcEEEEEe
Q psy2961          79 PKPKLALNCVGGN--SATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        79 ~~~d~vid~~g~~--~~~~~~~~l~~~G~~v~~g  110 (202)
                      ..+|.|+--...+  .+..+.+.|+|||+++.+.
T Consensus       153 ~~fD~V~ld~p~p~~~l~~~~~~LKpGG~lv~~~  186 (250)
T d1yb2a1         153 QMYDAVIADIPDPWNHVQKIASMMKPGSVATFYL  186 (250)
T ss_dssp             CCEEEEEECCSCGGGSHHHHHHTEEEEEEEEEEE
T ss_pred             ceeeeeeecCCchHHHHHHHHHhcCCCceEEEEe
Confidence            6799887544443  3445889999999999865

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=6.8e-05  Score=54.23  Aligned_cols=78  Identities=13%  Similarity=0.124  Sum_probs=47.1

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEe---cCcccHHHHHHHHHhc---CCceE---eC---hhHHHh-HHHhhCC
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIV---RNRDDIDKLKSYLKSL---GADYV---FT---EEELRN-ISRDASI   78 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~---~~~~~~~~~~~~~~~l---g~~~v---~~---~~~~~~-~~~~~~~   78 (202)
                      ..|||+|+++|+|.++++.+...|++++.+.   +..+...+..+.++++   +....   .|   +++... +.+.. .
T Consensus         3 kVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~-~   81 (285)
T d1jtva_           3 TVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVT-E   81 (285)
T ss_dssp             EEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCT-T
T ss_pred             CEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhcc-c
Confidence            3578999999999999999999999855443   3322212222333443   32211   13   344444 44433 3


Q ss_pred             CCCeEEEecCCC
Q psy2961          79 PKPKLALNCVGG   90 (202)
Q Consensus        79 ~~~d~vid~~g~   90 (202)
                      +.+|+++++.|.
T Consensus        82 g~idilvnnag~   93 (285)
T d1jtva_          82 GRVDVLVCNAGL   93 (285)
T ss_dssp             SCCSEEEECCCC
T ss_pred             cchhhhhhcccc
Confidence            679999998874

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.88  E-value=5.2e-05  Score=49.95  Aligned_cols=74  Identities=14%  Similarity=0.291  Sum_probs=52.9

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhCCCCCeEEEec
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNC   87 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~~~~~d~vid~   87 (202)
                      -.+.+|||.|+| .+|.++++.+...|++.+.++.+..+  ...+.++++|.. +.+.+++.+ +      ..+|+||.|
T Consensus        22 l~~~~ilviGaG-~~g~~v~~~L~~~g~~~i~v~nRt~~--ka~~l~~~~~~~-~~~~~~~~~~l------~~~Divi~a   91 (159)
T d1gpja2          22 LHDKTVLVVGAG-EMGKTVAKSLVDRGVRAVLVANRTYE--RAVELARDLGGE-AVRFDELVDHL------ARSDVVVSA   91 (159)
T ss_dssp             CTTCEEEEESCC-HHHHHHHHHHHHHCCSEEEEECSSHH--HHHHHHHHHTCE-ECCGGGHHHHH------HTCSEEEEC
T ss_pred             cccCeEEEECCC-HHHHHHHHHHHhcCCcEEEEEcCcHH--HHHHHHHhhhcc-cccchhHHHHh------ccCCEEEEe
Confidence            357899999996 99999999999999976666655432  134556677754 445555554 4      467999999


Q ss_pred             CCCch
Q psy2961          88 VGGNS   92 (202)
Q Consensus        88 ~g~~~   92 (202)
                      ++.+.
T Consensus        92 tss~~   96 (159)
T d1gpja2          92 TAAPH   96 (159)
T ss_dssp             CSSSS
T ss_pred             cCCCC
Confidence            98764

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.87  E-value=2.9e-06  Score=60.03  Aligned_cols=74  Identities=16%  Similarity=0.148  Sum_probs=50.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh----HHHhhCCCCCeEEE
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN----ISRDASIPKPKLAL   85 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~----~~~~~~~~~~d~vi   85 (202)
                      .|+++||+|+++++|.++++.+...|++|+.+.++++.    .+.+..+-++ +-++++...    +.+..  +++|++|
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~----~~~~~~~~~D-v~~~~~v~~~~~~~~~~~--g~iDiLV   78 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGA----PKGLFGVEVD-VTDSDAVDRAFTAVEEHQ--GPVEVLV   78 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCC----CTTSEEEECC-TTCHHHHHHHHHHHHHHH--SSCSEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcch----hcCceEEEEe-cCCHHHHHHHHHHHHHhc--CCceEEE
Confidence            68999999999999999999999999999998887763    2211111111 112333333    33333  5799999


Q ss_pred             ecCCC
Q psy2961          86 NCVGG   90 (202)
Q Consensus        86 d~~g~   90 (202)
                      +++|.
T Consensus        79 nnAG~   83 (237)
T d1uzma1          79 SNAGL   83 (237)
T ss_dssp             EECSC
T ss_pred             eeecc
Confidence            99874

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.86  E-value=0.00014  Score=44.94  Aligned_cols=90  Identities=9%  Similarity=0.007  Sum_probs=64.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeC---hhHHHhHHHhhCCCCCeEEEe
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT---EEELRNISRDASIPKPKLALN   86 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~---~~~~~~~~~~~~~~~~d~vid   86 (202)
                      .|.+|||.|+| .+|..-++.+...|++++++......  +....+++-....+-.   ..++         .++++|+-
T Consensus        11 ~~k~vlVvG~G-~va~~ka~~ll~~ga~v~v~~~~~~~--~~~~~~~~~~i~~~~~~~~~~dl---------~~~~lv~~   78 (113)
T d1pjqa1          11 RDRDCLIVGGG-DVAERKARLLLEAGARLTVNALTFIP--QFTVWANEGMLTLVEGPFDETLL---------DSCWLAIA   78 (113)
T ss_dssp             BTCEEEEECCS-HHHHHHHHHHHHTTBEEEEEESSCCH--HHHHHHTTTSCEEEESSCCGGGG---------TTCSEEEE
T ss_pred             CCCEEEEECCC-HHHHHHHHHHHHCCCeEEEEeccCCh--HHHHHHhcCCceeeccCCCHHHh---------CCCcEEee
Confidence            47899999999 89999999999999998888765542  2223333322222221   1222         57899999


Q ss_pred             cCCCchHHH-HHHhcccCcEEEEEec
Q psy2961          87 CVGGNSATN-LLRTLVSKGVMVTYGG  111 (202)
Q Consensus        87 ~~g~~~~~~-~~~~l~~~G~~v~~g~  111 (202)
                      +++.+.... .....+..|.+|.+..
T Consensus        79 at~d~~~n~~i~~~a~~~~ilVNv~D  104 (113)
T d1pjqa1          79 ATDDDTVNQRVSDAAESRRIFCNVVD  104 (113)
T ss_dssp             CCSCHHHHHHHHHHHHHTTCEEEETT
T ss_pred             cCCCHHHHHHHHHHHHHcCCEEEeCC
Confidence            998888765 7788889999998764

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=97.81  E-value=2.7e-05  Score=55.75  Aligned_cols=102  Identities=20%  Similarity=0.128  Sum_probs=68.3

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCC--CcEEEEecCcccHHHHHHHHHhcCCc-eEe-ChhHHHhHHHhhCCC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWG--LKTINIVRNRDDIDKLKSYLKSLGAD-YVF-TEEELRNISRDASIP   79 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g--~~vi~~~~~~~~~~~~~~~~~~lg~~-~v~-~~~~~~~~~~~~~~~   79 (202)
                      ...+++||++||=.|+|+  |.+++.+|+..|  .+|+++..+++..+...+.++.+|.. .+. ...|   +.......
T Consensus        97 ~~l~i~pG~~VLDiG~Gs--G~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d---~~~~~~~~  171 (266)
T d1o54a_          97 MMLDVKEGDRIIDTGVGS--GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRD---ISEGFDEK  171 (266)
T ss_dssp             HHTTCCTTCEEEEECCTT--SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCC---GGGCCSCC
T ss_pred             HhhCCCCCCEEEECCCCC--CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecc---cccccccc
Confidence            457889999999999974  788889999875  57888877776544444445556642 221 1112   22223345


Q ss_pred             CCeEEEecCCCch--HHHHHHhcccCcEEEEEe
Q psy2961          80 KPKLALNCVGGNS--ATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        80 ~~d~vid~~g~~~--~~~~~~~l~~~G~~v~~g  110 (202)
                      .+|.|+--+..+.  +..+.++|+|||+++.+.
T Consensus       172 ~~D~V~~d~p~p~~~l~~~~~~LKpGG~lv~~~  204 (266)
T d1o54a_         172 DVDALFLDVPDPWNYIDKCWEALKGGGRFATVC  204 (266)
T ss_dssp             SEEEEEECCSCGGGTHHHHHHHEEEEEEEEEEE
T ss_pred             ceeeeEecCCCHHHHHHHHHhhcCCCCEEEEEe
Confidence            6888766555542  345889999999999764

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=97.80  E-value=0.00014  Score=51.55  Aligned_cols=82  Identities=16%  Similarity=0.233  Sum_probs=52.9

Q ss_pred             CCCCEEEEeCCCc--HHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe--C---hhHHHh-HHHhh-CCC
Q psy2961           9 SPGDVVIQNGANS--ACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--T---EEELRN-ISRDA-SIP   79 (202)
Q Consensus         9 ~~g~~VlI~g~~~--~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~--~---~~~~~~-~~~~~-~~~   79 (202)
                      -.|+++||+|++|  ++|.+++..+...|++|+.+.++++......+.....+.....  +   ..+... ..... ...
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWP   82 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCS
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhhhccc
Confidence            4689999999998  7999999999999999998887755322222333444443333  2   222333 33322 235


Q ss_pred             CCeEEEecCCC
Q psy2961          80 KPKLALNCVGG   90 (202)
Q Consensus        80 ~~d~vid~~g~   90 (202)
                      .+|+++++++.
T Consensus        83 ~~d~~v~~a~~   93 (258)
T d1qsga_          83 KFDGFVHSIGF   93 (258)
T ss_dssp             SEEEEEECCCC
T ss_pred             ccceEEEeecc
Confidence            68999988753

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=97.78  E-value=0.00011  Score=52.56  Aligned_cols=80  Identities=14%  Similarity=0.133  Sum_probs=51.9

Q ss_pred             CCCEEEEeCCCc--HHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCC-ceEe--C---hhHHHh-HHHhhC-CC
Q psy2961          10 PGDVVIQNGANS--ACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA-DYVF--T---EEELRN-ISRDAS-IP   79 (202)
Q Consensus        10 ~g~~VlI~g~~~--~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~-~~v~--~---~~~~~~-~~~~~~-~~   79 (202)
                      .|+++||+|++|  ++|.++++.+...|++|+.+.++++ ..++.+.+.+.+. ..+.  +   ..+..+ +.+... -+
T Consensus         4 ~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~-~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g   82 (274)
T d2pd4a1           4 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-LEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLG   82 (274)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-THHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHHHcC
Confidence            589999999765  7999999999999999998887754 3334444433332 2222  2   233333 222211 25


Q ss_pred             CCeEEEecCCC
Q psy2961          80 KPKLALNCVGG   90 (202)
Q Consensus        80 ~~d~vid~~g~   90 (202)
                      ++|+++.+.|.
T Consensus        83 ~id~lV~nag~   93 (274)
T d2pd4a1          83 SLDFIVHSVAF   93 (274)
T ss_dssp             CEEEEEECCCC
T ss_pred             CCCeEEeeccc
Confidence            79999988874

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=97.77  E-value=9e-05  Score=52.59  Aligned_cols=97  Identities=22%  Similarity=0.233  Sum_probs=62.1

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEec
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNC   87 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~   87 (202)
                      .++|++||=.|+|+  |..++.++ ..|++|+++.-++...+..++.++..+....+-..+..+   ......+|+|+..
T Consensus       118 ~~~g~~VLDiGcGs--G~l~i~aa-~~g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~---~~~~~~fD~V~an  191 (254)
T d2nxca1         118 LRPGDKVLDLGTGS--GVLAIAAE-KLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA---ALPFGPFDLLVAN  191 (254)
T ss_dssp             CCTTCEEEEETCTT--SHHHHHHH-HTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH---HGGGCCEEEEEEE
T ss_pred             cCccCEEEEcccch--hHHHHHHH-hcCCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccc---cccccccchhhhc
Confidence            57999999999985  55666555 468999988877775443444445555543221122222   2223679999876


Q ss_pred             CCCchHH----HHHHhcccCcEEEEEe
Q psy2961          88 VGGNSAT----NLLRTLVSKGVMVTYG  110 (202)
Q Consensus        88 ~g~~~~~----~~~~~l~~~G~~v~~g  110 (202)
                      .......    .+.+.|+|||++++.|
T Consensus       192 i~~~~l~~l~~~~~~~LkpGG~lilSg  218 (254)
T d2nxca1         192 LYAELHAALAPRYREALVPGGRALLTG  218 (254)
T ss_dssp             CCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccHHHHHHHHHHhcCCCcEEEEEe
Confidence            5544332    3567999999999865

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=4.5e-05  Score=53.20  Aligned_cols=100  Identities=17%  Similarity=0.101  Sum_probs=63.1

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCC--CcEEEEecCcccHHHHHHHHHhcCCce-----Ee-ChhHHHhHHHhhCC
Q psy2961           7 SLSPGDVVIQNGANSACGQNVIQIARHWG--LKTINIVRNRDDIDKLKSYLKSLGADY-----VF-TEEELRNISRDASI   78 (202)
Q Consensus         7 ~~~~g~~VlI~g~~~~vG~~~i~la~~~g--~~vi~~~~~~~~~~~~~~~~~~lg~~~-----v~-~~~~~~~~~~~~~~   78 (202)
                      +++||++||-.|+|  .|..++-+|+..|  .+|+++-..++-.+...+.+++.+...     +. -..|...  -....
T Consensus        73 ~l~~g~~VLdiG~G--sGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~--~~~~~  148 (224)
T d1i1na_          73 QLHEGAKALDVGSG--SGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRM--GYAEE  148 (224)
T ss_dssp             TSCTTCEEEEETCT--TSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGG--CCGGG
T ss_pred             ccCCCCeEEEecCC--CCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeeccc--ccchh
Confidence            68999999999997  4888888888776  368877766653322333334333221     11 0011111  01112


Q ss_pred             CCCeEEEecCCCchHH-HHHHhcccCcEEEEEe
Q psy2961          79 PKPKLALNCVGGNSAT-NLLRTLVSKGVMVTYG  110 (202)
Q Consensus        79 ~~~d~vid~~g~~~~~-~~~~~l~~~G~~v~~g  110 (202)
                      ..||.|+.+..-+... .+++.|+|||++|..-
T Consensus       149 ~~fD~I~~~~~~~~ip~~l~~~LkpGG~LV~pv  181 (224)
T d1i1na_         149 APYDAIHVGAAAPVVPQALIDQLKPGGRLILPV  181 (224)
T ss_dssp             CCEEEEEECSBBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             hhhhhhhhhcchhhcCHHHHhhcCCCcEEEEEE
Confidence            5799998877665554 4889999999999854

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=0.00011  Score=51.88  Aligned_cols=49  Identities=18%  Similarity=0.177  Sum_probs=40.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCc
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD   61 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~   61 (202)
                      +|+++||+|+++++|.++++.+...|++|+.+.++++..   .+.+++++..
T Consensus         4 kGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~---~~~~~~l~~~   52 (248)
T d2o23a1           4 KGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGG---EAQAKKLGNN   52 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSH---HHHHHHHCTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHH---HHHHHHhCCC
Confidence            689999999999999999999999999999998888763   3444555543

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.68  E-value=1.7e-05  Score=55.30  Aligned_cols=100  Identities=18%  Similarity=0.229  Sum_probs=57.1

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHH---CC----CcEEEEecCcccHHHHHHHHHh-----cCCceEe-ChhHHHhHH
Q psy2961           7 SLSPGDVVIQNGANSACGQNVIQIARH---WG----LKTINIVRNRDDIDKLKSYLKS-----LGADYVF-TEEELRNIS   73 (202)
Q Consensus         7 ~~~~g~~VlI~g~~~~vG~~~i~la~~---~g----~~vi~~~~~~~~~~~~~~~~~~-----lg~~~v~-~~~~~~~~~   73 (202)
                      .+++|++||..|+|+  |..++-+++.   .|    .+|+++-..++-.+...+.+..     ++...+. ...|..+  
T Consensus        77 ~l~~g~~VLeIGtGs--GY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~--  152 (223)
T d1r18a_          77 HLKPGARILDVGSGS--GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK--  152 (223)
T ss_dssp             TCCTTCEEEEESCTT--SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG--
T ss_pred             ccCCCCeEEEecCCC--CHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccc--
Confidence            689999999999975  5555555554   44    3677776655422111111111     1211111 1111111  


Q ss_pred             HhhCCCCCeEEEecCCCchHH-HHHHhcccCcEEEEEe
Q psy2961          74 RDASIPKPKLALNCVGGNSAT-NLLRTLVSKGVMVTYG  110 (202)
Q Consensus        74 ~~~~~~~~d~vid~~g~~~~~-~~~~~l~~~G~~v~~g  110 (202)
                      .......||.|+-+.+-+... .+++.|++||++|..-
T Consensus       153 ~~~~~~~fD~Iiv~~a~~~~p~~l~~~Lk~gG~lV~pv  190 (223)
T d1r18a_         153 GYPPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVPV  190 (223)
T ss_dssp             CCGGGCSEEEEEECSCBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             ccccccceeeEEEEeechhchHHHHHhcCCCcEEEEEE
Confidence            001125799988877766554 4789999999998753

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.68  E-value=4.9e-05  Score=50.50  Aligned_cols=70  Identities=20%  Similarity=0.275  Sum_probs=46.8

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCc-EEEEecCcccHHHHHHHH-HhcCCceEeChhHHHhHHHhhCCCCCe
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYL-KSLGADYVFTEEELRNISRDASIPKPK   82 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~-vi~~~~~~~~~~~~~~~~-~~lg~~~v~~~~~~~~~~~~~~~~~~d   82 (202)
                      ..++.++.+|+|+|+| |.+.+++..++..|++ +..+.++.+    +.+.+ +.++...+....          ...+|
T Consensus        11 ~~~~~~~~~vlIlGaG-Gaarai~~aL~~~g~~~I~I~nR~~~----ka~~L~~~~~~~~~~~~~----------~~~~D   75 (167)
T d1npya1          11 KYHLNKNAKVIVHGSG-GMAKAVVAAFKNSGFEKLKIYARNVK----TGQYLAALYGYAYINSLE----------NQQAD   75 (167)
T ss_dssp             HTTCCTTSCEEEECSS-TTHHHHHHHHHHTTCCCEEEECSCHH----HHHHHHHHHTCEEESCCT----------TCCCS
T ss_pred             HcCCCCCCeEEEECCC-HHHHHHHHHHHHCCCCEEEEecccHH----HHHHHHHhhhhhhhhccc----------ccchh
Confidence            3445578899999998 8999999999999985 445445543    34444 344544332111          15689


Q ss_pred             EEEecCC
Q psy2961          83 LALNCVG   89 (202)
Q Consensus        83 ~vid~~g   89 (202)
                      ++|+|++
T Consensus        76 liINaTp   82 (167)
T d1npya1          76 ILVNVTS   82 (167)
T ss_dssp             EEEECSS
T ss_pred             hheeccc
Confidence            9999875

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.66  E-value=3.4e-05  Score=55.09  Aligned_cols=103  Identities=18%  Similarity=0.219  Sum_probs=63.4

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCC--cEEEEecCcccHHHHHHHHHhcC---CceEe-ChhHHHhHHHhhC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGL--KTINIVRNRDDIDKLKSYLKSLG---ADYVF-TEEELRNISRDAS   77 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~--~vi~~~~~~~~~~~~~~~~~~lg---~~~v~-~~~~~~~~~~~~~   77 (202)
                      ...+++||++||=.|+|  .|.+++.+|+..|.  +|+++-.+++..+...+.++.++   .+.+. ...|..+  ....
T Consensus        90 ~~l~i~PG~~VLE~G~G--sG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~--~~~~  165 (264)
T d1i9ga_          90 HEGDIFPGARVLEAGAG--SGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLAD--SELP  165 (264)
T ss_dssp             HHTTCCTTCEEEEECCT--TSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGG--CCCC
T ss_pred             HHhCCCCCCEEEecCcC--CcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccc--cccc
Confidence            45788999999999987  48899999998874  67777666553222222223321   11111 1112111  1123


Q ss_pred             CCCCeEEEecCCCch--HHHHHHhcccCcEEEEEe
Q psy2961          78 IPKPKLALNCVGGNS--ATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        78 ~~~~d~vid~~g~~~--~~~~~~~l~~~G~~v~~g  110 (202)
                      ...+|.||--...+.  ...+.+.|+|||+++.+.
T Consensus       166 ~~~fDaV~ldlp~P~~~l~~~~~~LkpGG~lv~~~  200 (264)
T d1i9ga_         166 DGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYV  200 (264)
T ss_dssp             TTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             CCCcceEEEecCCHHHHHHHHHhccCCCCEEEEEe
Confidence            467898765555442  335889999999998864

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=97.63  E-value=0.00083  Score=43.38  Aligned_cols=95  Identities=14%  Similarity=0.200  Sum_probs=65.6

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHC--CCcEEEEecCcccHHHHHHHHHhcCCceEe--ChhHHH---h-------------
Q psy2961          12 DVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGADYVF--TEEELR---N-------------   71 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~--g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~--~~~~~~---~-------------   71 (202)
                      .+|.|+|++|++|..+..+.+..  .+++++.+...+ .+...++++++.+..++  |.....   .             
T Consensus         3 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~~N-~~~L~~q~~ef~Pk~v~i~d~~~~~~l~~~~~~~~~~v~~g~   81 (150)
T d1r0ka2           3 RTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRN-VKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAAGA   81 (150)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESSC-HHHHHHHHHHTTCSEEEESCGGGHHHHHHHTTTCSSEEEESH
T ss_pred             cEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeCCC-HHHHHHHHHhhccccceeccHHHHHHHHHHhhhcccccccCc
Confidence            78999999999999999999876  478888776654 35567888889888776  221111   1             


Q ss_pred             --HHHhhCCCCCeEEEecCCCchHHH-HHHhcccCcEEEE
Q psy2961          72 --ISRDASIPKPKLALNCVGGNSATN-LLRTLVSKGVMVT  108 (202)
Q Consensus        72 --~~~~~~~~~~d~vid~~g~~~~~~-~~~~l~~~G~~v~  108 (202)
                        +.+.. ...+|+++.+..|..... .+..++.+-++.+
T Consensus        82 ~~l~~~~-~~~~D~vv~Ai~G~~GL~~tl~ai~~gk~iaL  120 (150)
T d1r0ka2          82 DALVEAA-MMGADWTMAAIIGCAGLKATLAAIRKGKTVAL  120 (150)
T ss_dssp             HHHHHHH-TSCCSEEEECCCSGGGHHHHHHHHHTTSEEEE
T ss_pred             cchheec-ccccceeeeecCchhHHHHHHHHHhcCCEEEE
Confidence              11111 246899999876665544 6777777766544

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.62  E-value=0.0002  Score=50.88  Aligned_cols=80  Identities=19%  Similarity=0.179  Sum_probs=49.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHH-HHH--HCCCcEEEEecCcccHHHHHHHHHhcCC-ceEe----C---hhHHHh-H---HH
Q psy2961          10 PGDVVIQNGANSACGQNVIQ-IAR--HWGLKTINIVRNRDDIDKLKSYLKSLGA-DYVF----T---EEELRN-I---SR   74 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~-la~--~~g~~vi~~~~~~~~~~~~~~~~~~lg~-~~v~----~---~~~~~~-~---~~   74 (202)
                      .|+.++|+|+++++|.++++ +|+  ..|++|+.+.++++..++..+.+++.+. ..+.    |   +++... +   .+
T Consensus         5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~~~~   84 (259)
T d1oaaa_           5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVRE   84 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence            57889999999999998765 555  3699999998887754444444443322 1221    3   333333 2   22


Q ss_pred             hh--CCCCCeEEEecCC
Q psy2961          75 DA--SIPKPKLALNCVG   89 (202)
Q Consensus        75 ~~--~~~~~d~vid~~g   89 (202)
                      ..  .+...|++++++|
T Consensus        85 ~~~~~~~~~~~lvnnag  101 (259)
T d1oaaa_          85 LPRPEGLQRLLLINNAA  101 (259)
T ss_dssp             SCCCTTCCEEEEEECCC
T ss_pred             hhhhccCceEEEEeccc
Confidence            21  2345788888765

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=97.57  E-value=0.00011  Score=49.00  Aligned_cols=95  Identities=13%  Similarity=0.113  Sum_probs=54.0

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEec
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNC   87 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~   87 (202)
                      ..++.+|+|+|+| +.+.+++..+...+.+++.+.|+.+..+...+.+...+....+...+       ..-..+|++|+|
T Consensus        15 ~~~~k~vlIlGaG-Gaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~-------~~~~~~diiIN~   86 (171)
T d1p77a1          15 LRPNQHVLILGAG-GATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDS-------IPLQTYDLVINA   86 (171)
T ss_dssp             CCTTCEEEEECCS-HHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGG-------CCCSCCSEEEEC
T ss_pred             CCCCCEEEEECCc-HHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhcc-------ccccccceeeec
Confidence            4578899999999 78999888777766777777777653211122222222222221111       112578999999


Q ss_pred             CCCchHHH----HHHhcccCcEEEEEe
Q psy2961          88 VGGNSATN----LLRTLVSKGVMVTYG  110 (202)
Q Consensus        88 ~g~~~~~~----~~~~l~~~G~~v~~g  110 (202)
                      ++......    ....++++..++.+.
T Consensus        87 tp~g~~~~~~~~~~~~~~~~~~~~D~v  113 (171)
T d1p77a1          87 TSAGLSGGTASVDAEILKLGSAFYDMQ  113 (171)
T ss_dssp             CCC-------CCCHHHHHHCSCEEESC
T ss_pred             ccccccccccchhhhhhcccceeeeee
Confidence            87432211    234556666666654

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=97.52  E-value=4.3e-05  Score=53.95  Aligned_cols=104  Identities=19%  Similarity=0.209  Sum_probs=66.3

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCce-E-eChhHHHhHHHhhCCC
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-V-FTEEELRNISRDASIP   79 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-v-~~~~~~~~~~~~~~~~   79 (202)
                      |.+..+++||++||=.|+|  .|..+..+++..|++|+++.-+++..+...+.+++.|... + +...|   +.+.....
T Consensus        25 l~~~~~l~pg~~VLDiGCG--~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d---~~~~~~~~   99 (245)
T d1nkva_          25 LGRVLRMKPGTRILDLGSG--SGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHND---AAGYVANE   99 (245)
T ss_dssp             HHHHTCCCTTCEEEEETCT--TCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESC---CTTCCCSS
T ss_pred             HHHHcCCCCCCEEEEEcCC--CCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhH---HhhccccC
Confidence            3456789999999999987  4677888888889999998877764333334445556432 1 11112   12222346


Q ss_pred             CCeEEEecCCCc-------hHHHHHHhcccCcEEEEEe
Q psy2961          80 KPKLALNCVGGN-------SATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        80 ~~d~vid~~g~~-------~~~~~~~~l~~~G~~v~~g  110 (202)
                      .||+|+-.-.-.       .+..+.+.|+|||+++...
T Consensus       100 ~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~  137 (245)
T d1nkva_         100 KCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGE  137 (245)
T ss_dssp             CEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             ceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEe
Confidence            799987543221       1223678999999998753

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=97.52  E-value=5e-05  Score=53.19  Aligned_cols=104  Identities=11%  Similarity=0.150  Sum_probs=65.6

Q ss_pred             cccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCC
Q psy2961           2 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPK   80 (202)
Q Consensus         2 l~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~   80 (202)
                      |.+.+.++||++||=.|+|  .|..+..+++. +++++++.-+++..+...+.+++.+.+.+. ...+..++  ......
T Consensus         8 l~~~~~~~~~~rILDiGcG--tG~~~~~la~~-~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~--~~~~~~   82 (234)
T d1xxla_           8 MIKTAECRAEHRVLDIGAG--AGHTALAFSPY-VQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESL--PFPDDS   82 (234)
T ss_dssp             HHHHHTCCTTCEEEEESCT--TSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBC--CSCTTC
T ss_pred             HHHHhCCCCCCEEEEeCCc--CcHHHHHHHHh-CCeEEEEeCChhhhhhhhhhhcccccccccccccccccc--cccccc
Confidence            4567889999999999997  47778888774 688888887776443344445555543221 01111111  012356


Q ss_pred             CeEEEecCCCc-------hHHHHHHhcccCcEEEEEe
Q psy2961          81 PKLALNCVGGN-------SATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        81 ~d~vid~~g~~-------~~~~~~~~l~~~G~~v~~g  110 (202)
                      ||+|+.+-.-.       .+.++.+.|+|+|+++..-
T Consensus        83 fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~  119 (234)
T d1xxla_          83 FDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVD  119 (234)
T ss_dssp             EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEE
Confidence            99988654322       1334678999999988753

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=0.00015  Score=50.66  Aligned_cols=95  Identities=12%  Similarity=-0.006  Sum_probs=57.8

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHh----cCCceEeChhHHHhHHHhhCCCCCeEE
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS----LGADYVFTEEELRNISRDASIPKPKLA   84 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~----lg~~~v~~~~~~~~~~~~~~~~~~d~v   84 (202)
                      .+|.+||-.|+|  .|..+..+++..+.+++++.-+++.    .+.+++    .+........+............+|.+
T Consensus        52 ~~g~~VLdIGcG--~G~~a~~~a~~~~~~v~~id~s~~~----~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i  125 (229)
T d1zx0a1          52 SKGGRVLEVGFG--MAIAASKVQEAPIDEHWIIECNDGV----FQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGI  125 (229)
T ss_dssp             TTCEEEEEECCT--TSHHHHHHHTSCEEEEEEEECCHHH----HHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEE
T ss_pred             cCCCeEEEeecc--chHHHHHHHHcCCCeEEEeCCCHHH----HHHHHHHhhhcccccccccccccccccccccccccce
Confidence            578899999997  5778888888777778777766653    444443    222211111222222222333578887


Q ss_pred             -EecCCCch----------H-HHHHHhcccCcEEEEE
Q psy2961          85 -LNCVGGNS----------A-TNLLRTLVSKGVMVTY  109 (202)
Q Consensus        85 -id~~g~~~----------~-~~~~~~l~~~G~~v~~  109 (202)
                       +|+.....          + ..+.+.|+|||+++..
T Consensus       126 ~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~  162 (229)
T d1zx0a1         126 LYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  162 (229)
T ss_dssp             EECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             eecccccccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence             57654321          2 2367899999999764

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.43  E-value=0.00041  Score=49.14  Aligned_cols=36  Identities=11%  Similarity=0.266  Sum_probs=32.3

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCccc
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD   47 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~   47 (202)
                      .+.||+|+++++|.++++.+...|++|+.+.++.++
T Consensus         2 ~vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~   37 (266)
T d1mxha_           2 PAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEG   37 (266)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchH
Confidence            367999999999999999999999999999988664

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.41  E-value=0.00017  Score=48.67  Aligned_cols=101  Identities=19%  Similarity=0.234  Sum_probs=62.9

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCc-eEe-ChhHHHhHHHhhCCCCCe
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD-YVF-TEEELRNISRDASIPKPK   82 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~-~v~-~~~~~~~~~~~~~~~~~d   82 (202)
                      ..++++|++||=.|+|+  |..++.+|+. +.+|+++-.+++......+.++++|.. .+- -..+..+.  ......+|
T Consensus        28 ~l~~~~g~~VLDiGcGs--G~~s~~lA~~-~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~--~~~~~~~D  102 (186)
T d1l3ia_          28 LAEPGKNDVAVDVGCGT--GGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA--LCKIPDID  102 (186)
T ss_dssp             HHCCCTTCEEEEESCTT--SHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHH--HTTSCCEE
T ss_pred             hcCCCCCCEEEEEECCe--Eccccccccc-ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhc--ccccCCcC
Confidence            45789999999999874  6777777765 568888877766443344445566652 221 11222221  12235789


Q ss_pred             EEEecCCCchH----HHHHHhcccCcEEEEEe
Q psy2961          83 LALNCVGGNSA----TNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        83 ~vid~~g~~~~----~~~~~~l~~~G~~v~~g  110 (202)
                      .|+...+....    ..+.+.|+|+|+++...
T Consensus       103 ~v~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~  134 (186)
T d1l3ia_         103 IAVVGGSGGELQEILRIIKDKLKPGGRIIVTA  134 (186)
T ss_dssp             EEEESCCTTCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEEeCccccchHHHHHHHHHhCcCCEEEEEe
Confidence            98865544332    23678899999988653

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=97.37  E-value=0.00014  Score=50.58  Aligned_cols=103  Identities=11%  Similarity=0.138  Sum_probs=62.9

Q ss_pred             ccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCCC
Q psy2961           3 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKP   81 (202)
Q Consensus         3 ~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~~   81 (202)
                      -+.++++++++||=.|+|  .|..+..+++. |++++++.-+++......+.++..+.+.+- -..+..++.  .....+
T Consensus         8 l~~~~l~~~~rVLDiGcG--~G~~~~~l~~~-~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~--~~~~~f   82 (231)
T d1vl5a_           8 MQIAALKGNEEVLDVATG--GGHVANAFAPF-VKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP--FTDERF   82 (231)
T ss_dssp             HHHHTCCSCCEEEEETCT--TCHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCC--SCTTCE
T ss_pred             HHhcCCCCcCEEEEeccc--CcHHHHHHHHh-CCEEEEEECCHHHHhhhhhccccccccccccccccccccc--cccccc
Confidence            356789999999999997  46666666654 788888877765432233334445544321 011111110  123579


Q ss_pred             eEEEecCCCc-------hHHHHHHhcccCcEEEEEe
Q psy2961          82 KLALNCVGGN-------SATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        82 d~vid~~g~~-------~~~~~~~~l~~~G~~v~~g  110 (202)
                      |+|+..-.-.       .+.++.++|+|||+++...
T Consensus        83 D~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~  118 (231)
T d1vl5a_          83 HIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVD  118 (231)
T ss_dssp             EEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccccccccCCHHHHHHHHHHhcCCCcEEEEEe
Confidence            9998654321       1234788999999999764

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=97.37  E-value=0.00057  Score=48.51  Aligned_cols=79  Identities=19%  Similarity=0.244  Sum_probs=52.0

Q ss_pred             CCCCCEEEEeCC--CcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHH-HhcCCceEe---C---hhH---HHh-HHH
Q psy2961           8 LSPGDVVIQNGA--NSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGADYVF---T---EEE---LRN-ISR   74 (202)
Q Consensus         8 ~~~g~~VlI~g~--~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~v~---~---~~~---~~~-~~~   74 (202)
                      +-.|+++||+|+  ++++|.++++-+...|++|+.+.+++++   ..+.+ +.++.....   |   .++   ..+ +.+
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~---~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~v~~   79 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLR---LIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTE   79 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHH---HHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHH---HHHHHHHHcCCceeeEeeecccccccccccchhhh
Confidence            457899999995  3579999999999999999888776653   22333 445543211   2   222   333 444


Q ss_pred             hhC-CCCCeEEEecCC
Q psy2961          75 DAS-IPKPKLALNCVG   89 (202)
Q Consensus        75 ~~~-~~~~d~vid~~g   89 (202)
                      ... ...+|+++.++|
T Consensus        80 ~~~~~~~ld~~i~~ag   95 (268)
T d2h7ma1          80 AIGAGNKLDGVVHSIG   95 (268)
T ss_dssp             HHCTTCCEEEEEECCC
T ss_pred             ccccCCCcceeeeccc
Confidence            333 356899999887

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.36  E-value=0.00074  Score=45.20  Aligned_cols=98  Identities=14%  Similarity=0.131  Sum_probs=57.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEe-cCcccHHHHHHHHHhcC----C-ceEeChhHHHhHHHhhCCCCCeE
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIV-RNRDDIDKLKSYLKSLG----A-DYVFTEEELRNISRDASIPKPKL   83 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~-~~~~~~~~~~~~~~~lg----~-~~v~~~~~~~~~~~~~~~~~~d~   83 (202)
                      .+.+|+|+|+| +.|.+++..+...|++.+.++ ++++..++..+.++.++    . ..+.+..+...+.+..  ..+|+
T Consensus        17 ~~k~vlIlGaG-Gaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~di   93 (182)
T d1vi2a1          17 KGKTMVLLGAG-GASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEAL--ASADI   93 (182)
T ss_dssp             TTCEEEEECCS-HHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHH--HTCSE
T ss_pred             CCCEEEEECCc-HHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhh--cccce
Confidence            67899999998 889999888888899655555 44443322223333332    1 1122223333222222  46799


Q ss_pred             EEecCCCchH-------HHHHHhcccCcEEEEEe
Q psy2961          84 ALNCVGGNSA-------TNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        84 vid~~g~~~~-------~~~~~~l~~~G~~v~~g  110 (202)
                      +|+|++-...       ..-+..++++..++.+.
T Consensus        94 iIN~Tp~G~~~~~~~~~~~~~~~~~~~~~v~Di~  127 (182)
T d1vi2a1          94 LTNGTKVGMKPLENESLVNDISLLHPGLLVTECV  127 (182)
T ss_dssp             EEECSSTTSTTSCSCCSCCCGGGSCTTCEEEECC
T ss_pred             eccccCCccccccchhhhhHHHhhhcchhhHHhh
Confidence            9999863211       11245677888888775

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=97.32  E-value=0.00014  Score=52.33  Aligned_cols=106  Identities=14%  Similarity=0.074  Sum_probs=66.0

Q ss_pred             ccccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCc-eE-eChhHHHhHHHhhCCCC
Q psy2961           3 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD-YV-FTEEELRNISRDASIPK   80 (202)
Q Consensus         3 ~~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~-~v-~~~~~~~~~~~~~~~~~   80 (202)
                      .....+.+|++||=.|+|  .|..+..+++..|++|+++.-++...+...+.++..|.. .+ +...+..++  ......
T Consensus        60 ~~~~~l~~~~~vLDiGcG--~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l--~~~~~s  135 (282)
T d2o57a1          60 AMTGVLQRQAKGLDLGAG--YGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI--PCEDNS  135 (282)
T ss_dssp             HHTTCCCTTCEEEEETCT--TSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC--SSCTTC
T ss_pred             HHhcCCCCCCEEEEeCCC--CcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccccccccc--cccccc
Confidence            345678999999999997  577888899888999998887776433333444444443 11 111121111  112356


Q ss_pred             CeEEEecCCCc-------hHHHHHHhcccCcEEEEEecc
Q psy2961          81 PKLALNCVGGN-------SATNLLRTLVSKGVMVTYGGM  112 (202)
Q Consensus        81 ~d~vid~~g~~-------~~~~~~~~l~~~G~~v~~g~~  112 (202)
                      ||+|+-.-.-.       .+.++.++|+|||+++.....
T Consensus       136 fD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~  174 (282)
T d2o57a1         136 YDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPM  174 (282)
T ss_dssp             EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             cchhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEee
Confidence            99997543321       123477899999999886543

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=97.30  E-value=0.0003  Score=47.31  Aligned_cols=97  Identities=7%  Similarity=-0.025  Sum_probs=59.5

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhc----CCceE------eC-------hhH
Q psy2961           6 NSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL----GADYV------FT-------EEE   68 (202)
Q Consensus         6 ~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~l----g~~~v------~~-------~~~   68 (202)
                      ..+.||.+||..|+|  .|..++.+|+ .|++|+++.-+++.    .+.+++.    +....      ..       ..+
T Consensus        16 l~~~~~~rvLd~GCG--~G~~a~~la~-~G~~V~gvD~S~~~----i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   88 (201)
T d1pjza_          16 LNVVPGARVLVPLCG--KSQDMSWLSG-QGYHVVGAELSEAA----VERYFTERGEQPHITSQGDFKVYAAPGIEIWCGD   88 (201)
T ss_dssp             HCCCTTCEEEETTTC--CSHHHHHHHH-HCCEEEEEEECHHH----HHHHHHHHCSCSEEEEETTEEEEECSSSEEEEEC
T ss_pred             cCCCCCCEEEEecCc--CCHHHHHHHH-cCCceEeecccHHH----HHHHHHHhccccchhhhhhhhhccccccceeccc
Confidence            357899999999997  5788888887 49999999888764    4555432    21100      00       001


Q ss_pred             HHhHHHhhCCCCCeEEEecCCCch---------HHHHHHhcccCcEEEEEe
Q psy2961          69 LRNISRDASIPKPKLALNCVGGNS---------ATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        69 ~~~~~~~~~~~~~d~vid~~g~~~---------~~~~~~~l~~~G~~v~~g  110 (202)
                      ..++.. .....+|+|++...-..         +..+.++|+|+|+++...
T Consensus        89 ~~~l~~-~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~  138 (201)
T d1pjza_          89 FFALTA-RDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLIT  138 (201)
T ss_dssp             CSSSTH-HHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred             cccccc-ccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEE
Confidence            111000 00146789888554221         233678999999987654

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=97.26  E-value=0.0004  Score=51.28  Aligned_cols=81  Identities=10%  Similarity=0.075  Sum_probs=50.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHh-cCCceEe-ChhHHHhHHHhhCCCCCeEEEec
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS-LGADYVF-TEEELRNISRDASIPKPKLALNC   87 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~-lg~~~v~-~~~~~~~~~~~~~~~~~d~vid~   87 (202)
                      .|.+|||+||+|-+|..+++.+...|.+|+++.++........+..+. -+...+. |-.|...+.+......+|+++.+
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~~~~~~~v~~~   86 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFHM   86 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHHHHhhhhcccCCeEEEeeccChHhhhhhhhhchhhhhhhh
Confidence            468999999999999999999999999999998876532111222211 1233332 21222212222222467899988


Q ss_pred             CCC
Q psy2961          88 VGG   90 (202)
Q Consensus        88 ~g~   90 (202)
                      ++.
T Consensus        87 aa~   89 (356)
T d1rkxa_          87 AAQ   89 (356)
T ss_dssp             CSC
T ss_pred             hcc
Confidence            864

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.22  E-value=0.00049  Score=47.53  Aligned_cols=72  Identities=18%  Similarity=0.116  Sum_probs=45.1

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCc--EEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCCCeEEEecC
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLK--TINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNCV   88 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~--vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~vid~~   88 (202)
                      .+|||+||+|.+|..+++.+...|.+  ++...++++    +.+.+. -+.+.+. |..+...+.+..  .++|.|+.++
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~----~~~~~~-~~~~~~~~d~~~~~~~~~~~--~~~d~vi~~a   76 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQ----GKEKIG-GEADVFIGDITDADSINPAF--QGIDALVILT   76 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHH----HHHHTT-CCTTEEECCTTSHHHHHHHH--TTCSEEEECC
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHH----HHHhcc-CCcEEEEeeecccccccccc--ccceeeEEEE
Confidence            58999999999999999999988875  444555543    222221 2333333 333333333333  4689999887


Q ss_pred             CC
Q psy2961          89 GG   90 (202)
Q Consensus        89 g~   90 (202)
                      +.
T Consensus        77 ~~   78 (252)
T d2q46a1          77 SA   78 (252)
T ss_dssp             CC
T ss_pred             ee
Confidence            63

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.21  E-value=0.0014  Score=43.61  Aligned_cols=90  Identities=10%  Similarity=0.036  Sum_probs=59.1

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeC--------hhHHHh-HHHhhCCCCCe
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT--------EEELRN-ISRDASIPKPK   82 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~--------~~~~~~-~~~~~~~~~~d   82 (202)
                      .++.|+|+| .+|++.+..+...|.+|+...++++    +.+.+++.+......        ...... +.+..  .++|
T Consensus         2 k~iaIiGaG-~~G~~~A~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~--~~aD   74 (184)
T d1bg6a2           2 KTYAVLGLG-NGGHAFAAYLALKGQSVLAWDIDAQ----RIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV--KDAD   74 (184)
T ss_dssp             CEEEEECCS-HHHHHHHHHHHHTTCEEEEECSCHH----HHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH--TTCS
T ss_pred             CEEEEECcc-HHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHh--cCCC
Confidence            689999998 9999999999999999998887765    566666655332211        000011 22222  5689


Q ss_pred             EEEecCCCchHHHHH----HhcccCcEEEE
Q psy2961          83 LALNCVGGNSATNLL----RTLVSKGVMVT  108 (202)
Q Consensus        83 ~vid~~g~~~~~~~~----~~l~~~G~~v~  108 (202)
                      ++|-++........+    ..+.++..++.
T Consensus        75 ~iii~v~~~~~~~~~~~i~~~l~~~~~iv~  104 (184)
T d1bg6a2          75 VILIVVPAIHHASIAANIASYISEGQLIIL  104 (184)
T ss_dssp             EEEECSCGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred             EEEEEEchhHHHHHHHHhhhccCCCCEEEE
Confidence            999999877655543    45555555543

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=97.19  E-value=0.0012  Score=47.14  Aligned_cols=34  Identities=15%  Similarity=0.139  Sum_probs=30.1

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      .+||+|+++++|.++++.+...|++|+.+.++++
T Consensus         4 VAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~   37 (284)
T d1e7wa_           4 VALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSA   37 (284)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCH
Confidence            4689999999999999999999999988777654

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.19  E-value=0.0013  Score=41.44  Aligned_cols=76  Identities=13%  Similarity=0.204  Sum_probs=52.6

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHH-hcCCceEe-ChhHHHhHHHhhCCCCCeEEEecCCC
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK-SLGADYVF-TEEELRNISRDASIPKPKLALNCVGG   90 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~-~lg~~~v~-~~~~~~~~~~~~~~~~~d~vid~~g~   90 (202)
                      +|+|+|+| .+|..+++.+...|..|+++..+++    +.+.+. +++...+. |..+...+.+ .+-..+|.++-+++.
T Consensus         2 ~IvI~G~G-~~G~~la~~L~~~g~~v~vid~d~~----~~~~~~~~~~~~vi~Gd~~~~~~l~~-~~i~~a~~vv~~t~~   75 (132)
T d1lssa_           2 YIIIAGIG-RVGYTLAKSLSEKGHDIVLIDIDKD----ICKKASAEIDALVINGDCTKIKTLED-AGIEDADMYIAVTGK   75 (132)
T ss_dssp             EEEEECCS-HHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHCSSEEEESCTTSHHHHHH-TTTTTCSEEEECCSC
T ss_pred             EEEEECCC-HHHHHHHHHHHHCCCCcceecCChh----hhhhhhhhhhhhhccCcccchhhhhh-cChhhhhhhcccCCc
Confidence            68999997 9999999999999999888877765    456564 35655444 2222221222 222568999988887


Q ss_pred             chHH
Q psy2961          91 NSAT   94 (202)
Q Consensus        91 ~~~~   94 (202)
                      +...
T Consensus        76 d~~N   79 (132)
T d1lssa_          76 EEVN   79 (132)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7544

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=97.15  E-value=0.0073  Score=38.79  Aligned_cols=95  Identities=12%  Similarity=0.262  Sum_probs=64.6

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHC--CCcEEEEecCcccHHHHHHHHHhcCCceEe--ChhH---HHh--------------
Q psy2961          13 VVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGADYVF--TEEE---LRN--------------   71 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~--g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~--~~~~---~~~--------------   71 (202)
                      +|.|+|++|++|..+..+.+..  .++|++.+...+ .+...+++.++.+..++  |...   +..              
T Consensus         3 ~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~N-~~~L~~q~~~f~pk~v~i~d~~~~~~l~~~l~~~~~~~~~~~g   81 (151)
T d1q0qa2           3 QLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKN-VTRMVEQCLEFSPRYAVMDDEASAKLLKTMLQQQGSRTEVLSG   81 (151)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESSC-HHHHHHHHHHHCCSEEEESSHHHHHHHHHHHHHTTCCCEEEES
T ss_pred             eEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecCc-HHHHHHHHHHHhhcccccccHHHHHHHHHHhhhhccccccccC
Confidence            6899999999999999999877  467887776654 34456777888888776  2221   111              


Q ss_pred             ---HHHhhCCCCCeEEEecCCCchHHH-HHHhcccCcEEEE
Q psy2961          72 ---ISRDASIPKPKLALNCVGGNSATN-LLRTLVSKGVMVT  108 (202)
Q Consensus        72 ---~~~~~~~~~~d~vid~~g~~~~~~-~~~~l~~~G~~v~  108 (202)
                         +.+.....++|+|+.+..|-.... .+..++.+=++.+
T Consensus        82 ~~~l~~~~~~~~~D~vi~AI~G~aGL~~t~~aik~gk~iaL  122 (151)
T d1q0qa2          82 QQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTILL  122 (151)
T ss_dssp             HHHHHHHHTCTTCCEEEECCSSGGGHHHHHHHHHTTCEEEE
T ss_pred             hHHHHHHhcCCCCCEEEEecCcccHHHHHHHHHhcCCeEEE
Confidence               122222357899999887766554 6677766655443

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.15  E-value=0.00026  Score=41.99  Aligned_cols=82  Identities=12%  Similarity=0.011  Sum_probs=50.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVG   89 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~g   89 (202)
                      .|++|+|+|.| ..|+++++++...|++|++...+.+..  ..+.++. +....+.+.+...+      .++|.++-+-|
T Consensus         4 ~~K~v~ViGlG-~sG~s~a~~L~~~g~~v~~~D~~~~~~--~~~~~~~-~~~~~~~~~~~~~~------~~~d~vi~SPG   73 (93)
T d2jfga1           4 QGKNVVIIGLG-LTGLSCVDFFLARGVTPRVMDTRMTPP--GLDKLPE-AVERHTGSLNDEWL------MAADLIVASPG   73 (93)
T ss_dssp             TTCCEEEECCS-HHHHHHHHHHHHTTCCCEEEESSSSCT--TGGGSCT-TSCEEESBCCHHHH------HHCSEEEECTT
T ss_pred             CCCEEEEEeEC-HHHHHHHHHHHHCCCEEEEeeCCcCch--hHHHHhh-ccceeecccchhhh------ccCCEEEECCC
Confidence            46889999998 899999999999999999888765420  1222222 22333322111001      35688887777


Q ss_pred             CchHHHHHHhcc
Q psy2961          90 GNSATNLLRTLV  101 (202)
Q Consensus        90 ~~~~~~~~~~l~  101 (202)
                      -+.....+...+
T Consensus        74 i~~~~~~~~~a~   85 (93)
T d2jfga1          74 IALAHPSLSAAA   85 (93)
T ss_dssp             SCTTSHHHHHHH
T ss_pred             CCCCCHHHHHHH
Confidence            655444444333

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=97.11  E-value=0.0023  Score=46.85  Aligned_cols=78  Identities=10%  Similarity=0.002  Sum_probs=46.8

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHH---HHhcCCceEe-ChhHHHhHHHhhCCCCCeEEEecC
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSY---LKSLGADYVF-TEEELRNISRDASIPKPKLALNCV   88 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~---~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~vid~~   88 (202)
                      +|||+||+|-+|..++..+...|.+|+++.+...........   ...-....+. |-.+...+.+.....++|+||.++
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~ViHlA   81 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHFA   81 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCCHHHHHHHHhccCCCEEEECC
Confidence            699999999999999999999999998885422110012222   2222344332 212221122322225789999987


Q ss_pred             CC
Q psy2961          89 GG   90 (202)
Q Consensus        89 g~   90 (202)
                      +.
T Consensus        82 a~   83 (338)
T d1udca_          82 GL   83 (338)
T ss_dssp             SC
T ss_pred             Cc
Confidence            53

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=97.10  E-value=0.0013  Score=47.90  Aligned_cols=78  Identities=19%  Similarity=0.263  Sum_probs=47.4

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecC-cccHHHHHHHHHhcC-CceEe-ChhHHHhHHHhhCCCCCeEEEecCC
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRN-RDDIDKLKSYLKSLG-ADYVF-TEEELRNISRDASIPKPKLALNCVG   89 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~-~~~~~~~~~~~~~lg-~~~v~-~~~~~~~~~~~~~~~~~d~vid~~g   89 (202)
                      +|||+||+|-+|..+++.+...|.+|+++.+- .....+..+.+...+ .+.+. |-.+...+.+...+.++|+||.+++
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih~aa   81 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLAG   81 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHHhcCCceEEeecc
Confidence            69999999999999999888889999887432 112122334444443 33332 2122111222222246899999886


Q ss_pred             C
Q psy2961          90 G   90 (202)
Q Consensus        90 ~   90 (202)
                      .
T Consensus        82 ~   82 (338)
T d1orra_          82 Q   82 (338)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.00054  Score=47.66  Aligned_cols=76  Identities=20%  Similarity=0.261  Sum_probs=49.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--cEEEEecCcccHHHHHHHHHhcCCceE-eChhHHHhHHHhhCCCCCeEEEe
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGL--KTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRNISRDASIPKPKLALN   86 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~--~vi~~~~~~~~~~~~~~~~~~lg~~~v-~~~~~~~~~~~~~~~~~~d~vid   86 (202)
                      .+.+|||+||+|.+|..+++.+...|.  +++++++++....  .+...  ..... .|..+..++.+..  .++|+++.
T Consensus        13 ~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~--~~~~~--~i~~~~~D~~~~~~~~~~~--~~~d~vi~   86 (232)
T d2bkaa1          13 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFD--EEAYK--NVNQEVVDFEKLDDYASAF--QGHDVGFC   86 (232)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCC--SGGGG--GCEEEECCGGGGGGGGGGG--SSCSEEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhc--ccccc--eeeeeeecccccccccccc--cccccccc
Confidence            347899999999999999988887785  7888887654210  11111  12222 2444433343433  56899999


Q ss_pred             cCCCc
Q psy2961          87 CVGGN   91 (202)
Q Consensus        87 ~~g~~   91 (202)
                      |+|..
T Consensus        87 ~~~~~   91 (232)
T d2bkaa1          87 CLGTT   91 (232)
T ss_dssp             CCCCC
T ss_pred             ccccc
Confidence            99853

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.07  E-value=0.0045  Score=45.24  Aligned_cols=36  Identities=14%  Similarity=0.131  Sum_probs=30.3

Q ss_pred             CCEEEEeCCC--cHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961          11 GDVVIQNGAN--SACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus        11 g~~VlI~g~~--~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      ++.+||+|++  +|+|.++++.+...|++|+.+.++..
T Consensus         2 ~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~   39 (329)
T d1uh5a_           2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPV   39 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGG
T ss_pred             CcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchh
Confidence            5678999954  69999999999999999988776654

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=97.07  E-value=0.0017  Score=46.53  Aligned_cols=79  Identities=15%  Similarity=0.258  Sum_probs=50.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccH----HHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCCCeEE
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDI----DKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLA   84 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~----~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~v   84 (202)
                      ...+|||+||+|.+|..++..+...|.+|++++++....    .+....+...+++.+. |..+...+.+..  .+.+.+
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~--~~~~~~   79 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDAL--KQVDVV   79 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHH--TTCSEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhc--cCcchh
Confidence            346799999999999999998888999999998865421    1122333444555443 223333333333  456777


Q ss_pred             EecCCC
Q psy2961          85 LNCVGG   90 (202)
Q Consensus        85 id~~g~   90 (202)
                      +.+.+.
T Consensus        80 ~~~~~~   85 (312)
T d1qyda_          80 ISALAG   85 (312)
T ss_dssp             EECCCC
T ss_pred             hhhhhh
Confidence            777654

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=97.06  E-value=0.0011  Score=47.63  Aligned_cols=37  Identities=14%  Similarity=0.056  Sum_probs=32.2

Q ss_pred             CCCEEEEeCCCc--HHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961          10 PGDVVIQNGANS--ACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus        10 ~g~~VlI~g~~~--~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      .|+++||+|++|  |+|.++++.+...|++|+.+.+++.
T Consensus         7 ~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~   45 (297)
T d1d7oa_           7 RGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPA   45 (297)
T ss_dssp             TTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchh
Confidence            688999999876  8999999999999999987776543

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.0033  Score=40.97  Aligned_cols=92  Identities=14%  Similarity=0.233  Sum_probs=65.7

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHh-cCCceEeChhHHHhHHHhhCCCCCeEEE
Q psy2961           7 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS-LGADYVFTEEELRNISRDASIPKPKLAL   85 (202)
Q Consensus         7 ~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~-lg~~~v~~~~~~~~~~~~~~~~~~d~vi   85 (202)
                      -+-.|++|+|.|-| -+|.-.++.++.+|++|+++-..+      ...+++ +..-.+..      +.+..  ...|+++
T Consensus        20 ~~l~Gk~v~V~GyG-~iG~g~A~~~rg~G~~V~v~e~dp------~~al~A~~dG~~v~~------~~~a~--~~adivv   84 (163)
T d1li4a1          20 VMIAGKVAVVAGYG-DVGKGCAQALRGFGARVIITEIDP------INALQAAMEGYEVTT------MDEAC--QEGNIFV   84 (163)
T ss_dssp             CCCTTCEEEEECCS-HHHHHHHHHHHHTTCEEEEECSCH------HHHHHHHHTTCEECC------HHHHT--TTCSEEE
T ss_pred             ceecCCEEEEeccc-cccHHHHHHHHhCCCeeEeeeccc------chhHHhhcCceEeee------hhhhh--hhccEEE
Confidence            35589999999999 999999999999999988876554      233333 22222222      11221  4569999


Q ss_pred             ecCCCchHH--HHHHhcccCcEEEEEeccC
Q psy2961          86 NCVGGNSAT--NLLRTLVSKGVMVTYGGMS  113 (202)
Q Consensus        86 d~~g~~~~~--~~~~~l~~~G~~v~~g~~~  113 (202)
                      -++|+....  +-++.|+++.-++.+|...
T Consensus        85 taTGn~~vI~~eh~~~MKdgaIL~N~Ghfd  114 (163)
T d1li4a1          85 TTTGCIDIILGRHFEQMKDDAIVCNIGHFD  114 (163)
T ss_dssp             ECSSCSCSBCHHHHTTCCTTEEEEECSSST
T ss_pred             ecCCCccchhHHHHHhccCCeEEEEecccc
Confidence            999987643  4788999999998887443

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=97.05  E-value=0.00061  Score=50.20  Aligned_cols=42  Identities=24%  Similarity=0.346  Sum_probs=36.8

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      ..-+.+|++|||+|++|-+|..+++.+...|++|++++++.+
T Consensus         5 ~~~~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~   46 (342)
T d1y1pa1           5 NAVLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSAS   46 (342)
T ss_dssp             TCSSCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCCCCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCch
Confidence            344678999999999999999999888888999999998765

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.00055  Score=50.14  Aligned_cols=105  Identities=19%  Similarity=0.235  Sum_probs=60.5

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCC--cEEEEecCcccHHHHHHHHHhcC-----------CceEe-ChhHH
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGL--KTINIVRNRDDIDKLKSYLKSLG-----------ADYVF-TEEEL   69 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~--~vi~~~~~~~~~~~~~~~~~~lg-----------~~~v~-~~~~~   69 (202)
                      ...+++||++||=.|+|+  |.+++.+|+..|.  +|+++-.+++......+.++.++           .+.+. ...|+
T Consensus        92 ~~l~i~pG~rVLE~GtGs--G~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di  169 (324)
T d2b25a1          92 SMMDINPGDTVLEAGSGS--GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDI  169 (324)
T ss_dssp             HHHTCCTTCEEEEECCTT--SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCT
T ss_pred             HHhCCCCCCEEEEecccc--cHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecch
Confidence            456789999999999874  8899999998875  68887776653222222233221           11111 01122


Q ss_pred             HhHHHhhCCCCCeEEEecCCCc--hHHHHHHhcccCcEEEEEe
Q psy2961          70 RNISRDASIPKPKLALNCVGGN--SATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        70 ~~~~~~~~~~~~d~vid~~g~~--~~~~~~~~l~~~G~~v~~g  110 (202)
                      ...........+|.||=-+..+  ...++.+.|+|||+++.+.
T Consensus       170 ~~~~~~~~~~~fD~V~LD~p~P~~~l~~~~~~LKpGG~lv~~~  212 (324)
T d2b25a1         170 SGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYV  212 (324)
T ss_dssp             TCCC-------EEEEEECSSSTTTTHHHHGGGEEEEEEEEEEE
T ss_pred             hhcccccCCCCcceEeecCcCHHHHHHHHHHhccCCCEEEEEe
Confidence            1100011124578776433333  3456889999999999875

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.98  E-value=0.00071  Score=46.45  Aligned_cols=97  Identities=15%  Similarity=0.209  Sum_probs=57.8

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEec
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNC   87 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~   87 (202)
                      ++++.+||=.|+|+  |..+..+++ .|++++++.-+++..+...+.+...+.....-..+..++  ......+|+|+-.
T Consensus        35 l~~~~~ILDiGcG~--G~~~~~la~-~~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l--~~~~~~fD~I~~~  109 (226)
T d1ve3a1          35 MKKRGKVLDLACGV--GGFSFLLED-YGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKL--SFEDKTFDYVIFI  109 (226)
T ss_dssp             CCSCCEEEEETCTT--SHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSC--CSCTTCEEEEEEE
T ss_pred             cCCCCEEEEECCCc--chhhhhHhh-hhcccccccccccchhhhhhhhccccccccccccccccc--cccCcCceEEEEe
Confidence            57889999999974  778888886 488988888776643333333334443211100111111  1123578998764


Q ss_pred             CCCc-----h----HHHHHHhcccCcEEEEE
Q psy2961          88 VGGN-----S----ATNLLRTLVSKGVMVTY  109 (202)
Q Consensus        88 ~g~~-----~----~~~~~~~l~~~G~~v~~  109 (202)
                      ..-.     .    +..+.+.|+|||+++..
T Consensus       110 ~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~  140 (226)
T d1ve3a1         110 DSIVHFEPLELNQVFKEVRRVLKPSGKFIMY  140 (226)
T ss_dssp             SCGGGCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cchhhCChhHHHHHHHHHHHHcCcCcEEEEE
Confidence            4321     1    22367899999998764

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.97  E-value=0.00067  Score=41.54  Aligned_cols=70  Identities=19%  Similarity=0.246  Sum_probs=45.2

Q ss_pred             CCCC-CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCCCeEE
Q psy2961           8 LSPG-DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLA   84 (202)
Q Consensus         8 ~~~g-~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~v   84 (202)
                      +.|+ .+|.|+|+| -+|.+.++-|+.+|.++++...+++      .-+.......++ ++.|...+.+.....++|+|
T Consensus         7 ~~~~~~kigIlGgG-QL~rMla~aA~~lG~~v~v~d~~~~------~PA~~va~~~i~~~~~d~~~l~~~~~~~~~Dvi   78 (111)
T d1kjqa2           7 LRPAATRVMLLGSG-ELGKEVAIECQRLGVEVIAVDRYAD------APAMHVAHRSHVINMLDGDALRRVVELEKPHYI   78 (111)
T ss_dssp             TSTTCCEEEEESCS-HHHHHHHHHHHTTTCEEEEEESSTT------CGGGGGSSEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred             CCCCCCEEEEEeCC-HHHHHHHHHHHHCCCEEEEEcCCCC------CchhhcCCeEEECCCCCHHHHHHHHHhhCCceE
Confidence            3444 469999988 9999999999999999998886665      233344444444 34444332222111256776

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.97  E-value=0.002  Score=44.62  Aligned_cols=102  Identities=15%  Similarity=0.137  Sum_probs=62.7

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCC--cEEEEecCcccHHHHHHHHHhcCCc-eEe-ChhHHHhHHHhhCCCC
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWGL--KTINIVRNRDDIDKLKSYLKSLGAD-YVF-TEEELRNISRDASIPK   80 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~--~vi~~~~~~~~~~~~~~~~~~lg~~-~v~-~~~~~~~~~~~~~~~~   80 (202)
                      ...++||++||=.|+|  .|..+..+|+..|.  +|+++--++....+..+.++..+.. .+. +.........  ....
T Consensus        68 ~l~i~pG~~VLDlGaG--sG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~--~~~~  143 (227)
T d1g8aa_          68 NFPIKPGKSVLYLGIA--SGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRA--LVPK  143 (227)
T ss_dssp             CCCCCTTCEEEEETTT--STTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTT--TCCC
T ss_pred             ccccCCCCEEEEeccC--CCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccc--cccc
Confidence            4568999999999997  48899999998864  6888877766433333333333322 222 2111111111  1246


Q ss_pred             CeEEEecCCCch-----HHHHHHhcccCcEEEEEe
Q psy2961          81 PKLALNCVGGNS-----ATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        81 ~d~vid~~g~~~-----~~~~~~~l~~~G~~v~~g  110 (202)
                      +|+++..+..+.     +..+.+.|+++|+++.+-
T Consensus       144 vD~i~~d~~~~~~~~~~l~~~~~~LkpgG~lvi~~  178 (227)
T d1g8aa_         144 VDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIAV  178 (227)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEEEEccccchHHHHHHHHHHhcccCCeEEEEE
Confidence            888876554432     233668999999988753

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=96.94  E-value=0.00058  Score=47.58  Aligned_cols=36  Identities=14%  Similarity=0.254  Sum_probs=32.3

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      ++++||+|+++++|.++++.+...|++|+.+.++++
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~   36 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE   36 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            368899999999999999999999999998887765

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.94  E-value=0.0013  Score=49.33  Aligned_cols=32  Identities=16%  Similarity=0.193  Sum_probs=28.7

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEe
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIV   42 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~   42 (202)
                      |.+|||+|++|-+|..+++.+...|.+|+++.
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            68999999999999999999999999988873

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.93  E-value=0.0013  Score=43.43  Aligned_cols=94  Identities=12%  Similarity=0.141  Sum_probs=58.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHH-HhcCCceEe-Ch-hHHHhHHHhhCCCCCeEEEe
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGADYVF-TE-EELRNISRDASIPKPKLALN   86 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~v~-~~-~~~~~~~~~~~~~~~d~vid   86 (202)
                      .+++|+|.|+| .+|..+++.+...|.+|+++.++.+    +.+.+ ..++...+. .. ..........  ...|.++.
T Consensus         1 ~~K~IliiGaG-~~G~~~a~~L~~~g~~V~v~dr~~~----~a~~l~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~i~   73 (182)
T d1e5qa1           1 ATKSVLMLGSG-FVTRPTLDVLTDSGIKVTVACRTLE----SAKKLSAGVQHSTPISLDVNDDAALDAEV--AKHDLVIS   73 (182)
T ss_dssp             CCCEEEEECCS-TTHHHHHHHHHTTTCEEEEEESCHH----HHHHHHTTCTTEEEEECCTTCHHHHHHHH--TTSSEEEE
T ss_pred             CCCEEEEECCC-HHHHHHHHHHHhCCCEEEEEECChH----HHHHHHhcccccccccccccchhhhHhhh--hccceeEe
Confidence            36799999997 9999999999999999888777765    44444 344433332 11 1111122222  35677877


Q ss_pred             cCCCchHHH-HHHhcccCcEEEEEe
Q psy2961          87 CVGGNSATN-LLRTLVSKGVMVTYG  110 (202)
Q Consensus        87 ~~g~~~~~~-~~~~l~~~G~~v~~g  110 (202)
                      +........ ...++..+..++...
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~   98 (182)
T d1e5qa1          74 LIPYTFHATVIKSAIRQKKHVVTTS   98 (182)
T ss_dssp             CSCGGGHHHHHHHHHHHTCEEECSS
T ss_pred             eccchhhhHHHHHHHhhccceeecc
Confidence            776554444 445666666766654

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.91  E-value=0.002  Score=45.01  Aligned_cols=97  Identities=11%  Similarity=0.114  Sum_probs=57.9

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEE
Q psy2961           6 NSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLAL   85 (202)
Q Consensus         6 ~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vi   85 (202)
                      ....++.+||=.|+|+  |..+..+++ .|++++++.-+++..+...+.++..+...-+-..+   +.+......+|+|+
T Consensus        37 ~~~~~~~~iLDiGcGt--G~~~~~l~~-~~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d---~~~l~~~~~fD~I~  110 (251)
T d1wzna1          37 DAKREVRRVLDLACGT--GIPTLELAE-RGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGD---VLEIAFKNEFDAVT  110 (251)
T ss_dssp             TCSSCCCEEEEETCTT--CHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESC---GGGCCCCSCEEEEE
T ss_pred             hcCCCCCEEEEeCCCC--Cccchhhcc-cceEEEEEeeccccccccccccccccccchheehh---hhhcccccccchHh
Confidence            3456778999999984  777777776 68898888777654322233333444321111122   22212235799988


Q ss_pred             ecCCCc----------hHHHHHHhcccCcEEEE
Q psy2961          86 NCVGGN----------SATNLLRTLVSKGVMVT  108 (202)
Q Consensus        86 d~~g~~----------~~~~~~~~l~~~G~~v~  108 (202)
                      ...+.-          .+..+.++|+|||.++.
T Consensus       111 ~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii  143 (251)
T d1wzna1         111 MFFSTIMYFDEEDLRKLFSKVAEALKPGGVFIT  143 (251)
T ss_dssp             ECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             hhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEE
Confidence            654321          12236789999999876

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.0011  Score=46.05  Aligned_cols=99  Identities=12%  Similarity=-0.028  Sum_probs=61.4

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhc-CCce------------EeC------
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL-GADY------------VFT------   65 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~l-g~~~------------v~~------   65 (202)
                      ...+.++.+||..|+|  .|..+..+|+ .|++|+++.-+++    ..+.+++. +...            ...      
T Consensus        40 ~l~~~~~~rvLd~GCG--~G~~a~~LA~-~G~~V~gvD~S~~----ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  112 (229)
T d2bzga1          40 FLKGKSGLRVFFPLCG--KAVEMKWFAD-RGHSVVGVEISEL----GIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNI  112 (229)
T ss_dssp             HHTTCCSCEEEETTCT--TCTHHHHHHH-TTCEEEEECSCHH----HHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSE
T ss_pred             hcCCCCCCEEEEeCCC--CcHHHHHHHh-CCCcEEEEeCCHH----HHHHHHHHhhccccccchhcccccceeeecCCcE
Confidence            3456789999999997  4888888876 6999999987776    35555432 2111            000      


Q ss_pred             ---hhHHHhHHHhhCCCCCeEEEecCCCc---------hHHHHHHhcccCcEEEEEec
Q psy2961          66 ---EEELRNISRDASIPKPKLALNCVGGN---------SATNLLRTLVSKGVMVTYGG  111 (202)
Q Consensus        66 ---~~~~~~~~~~~~~~~~d~vid~~g~~---------~~~~~~~~l~~~G~~v~~g~  111 (202)
                         ..|+..+. ......+|+|+++..-.         ....+.++|+|+|+++....
T Consensus       113 ~~~~~d~~~l~-~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~  169 (229)
T d2bzga1         113 SLYCCSIFDLP-RTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVL  169 (229)
T ss_dssp             EEEESCGGGGG-GSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEEEcchhhcc-ccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEc
Confidence               01111110 11235689999876421         12346789999999877653

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=96.88  E-value=0.01  Score=38.12  Aligned_cols=98  Identities=16%  Similarity=0.062  Sum_probs=62.7

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCCCeEEEecCC
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNCVG   89 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~vid~~g   89 (202)
                      .+.++|+|.+ .+|..+++.+...|.+++++...++...++.+.+...|...+. |..+...+++ .+-..+|.++-+++
T Consensus         3 knHiII~G~g-~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~-a~i~~a~~vi~~~~   80 (153)
T d1id1a_           3 KDHFIVCGHS-ILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKK-AGIDRCRAILALSD   80 (153)
T ss_dssp             CSCEEEECCS-HHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHH-HTTTTCSEEEECSS
T ss_pred             CCEEEEECCC-HHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHH-hccccCCEEEEccc
Confidence            3679999998 9999999999999999888887765432334444445666555 2222211222 22256889998888


Q ss_pred             CchHHH----HHHhcccCcEEEEEe
Q psy2961          90 GNSATN----LLRTLVSKGVMVTYG  110 (202)
Q Consensus        90 ~~~~~~----~~~~l~~~G~~v~~g  110 (202)
                      .+....    ..+-+.|.-+++...
T Consensus        81 ~d~~n~~~~~~~r~~~~~~~iia~~  105 (153)
T d1id1a_          81 NDADNAFVVLSAKDMSSDVKTVLAV  105 (153)
T ss_dssp             CHHHHHHHHHHHHHHTSSSCEEEEC
T ss_pred             cHHHHHHHHHHHHHhCCCCceEEEE
Confidence            765432    234456666666543

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.87  E-value=0.0031  Score=46.26  Aligned_cols=79  Identities=9%  Similarity=0.019  Sum_probs=47.1

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccH---HHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCCCeEEEec
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDI---DKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNC   87 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~---~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~vid~   87 (202)
                      +.|||+||+|-+|..++..+...|.+|+++.+.....   ....+....-+.+.+. |-.+...+.......++|+||.+
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vihl   81 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVIHF   81 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEEEEC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECCCCcchhHHHhHHhhcccCCeEEEeecCCHHHHHHHHhccCCCEEEEc
Confidence            4799999999999999999999999998875322110   0012222223344333 21222222222222579999998


Q ss_pred             CCC
Q psy2961          88 VGG   90 (202)
Q Consensus        88 ~g~   90 (202)
                      ++.
T Consensus        82 Aa~   84 (347)
T d1z45a2          82 AGL   84 (347)
T ss_dssp             CSC
T ss_pred             ccc
Confidence            864

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=96.87  E-value=0.0035  Score=45.97  Aligned_cols=75  Identities=13%  Similarity=0.109  Sum_probs=48.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhc-CCceEe-ChhHHHh-HHHhhCCCCCeEEEe
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL-GADYVF-TEEELRN-ISRDASIPKPKLALN   86 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~l-g~~~v~-~~~~~~~-~~~~~~~~~~d~vid   86 (202)
                      ..++|+|+||+|.+|..++..+...|.+|++++++.++.  +...+..+ +++.+. |..+..+ +....  .+.|.++.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~--~~~~~~~~~~v~~~~gD~~d~~~~~~~a~--~~~~~~~~   77 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGL--IAEELQAIPNVTLFQGPLLNNVPLMDTLF--EGAHLAFI   77 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSH--HHHHHHTSTTEEEEESCCTTCHHHHHHHH--TTCSEEEE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchh--hhhhhcccCCCEEEEeeCCCcHHHHHHHh--cCCceEEe
Confidence            457999999999999999999999999999999977642  23334443 444333 2222222 33343  34566554


Q ss_pred             cC
Q psy2961          87 CV   88 (202)
Q Consensus        87 ~~   88 (202)
                      ..
T Consensus        78 ~~   79 (350)
T d1xgka_          78 NT   79 (350)
T ss_dssp             CC
T ss_pred             ec
Confidence            33

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.80  E-value=0.0044  Score=38.77  Aligned_cols=73  Identities=10%  Similarity=0.056  Sum_probs=53.4

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecCCCch
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGNS   92 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~g~~~   92 (202)
                      +|.|+|++|-+|.+..+++...+.+++...+.+..              ..+              ..+|++||.+..+.
T Consensus         2 ki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~~--------------~~~--------------~~~DVvIDFS~p~~   53 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGV--------------EEL--------------DSPDVVIDFSSPEA   53 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEE--------------EEC--------------SCCSEEEECSCGGG
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCcH--------------HHh--------------ccCCEEEEecCHHH
Confidence            68999998899999999999999887766543320              011              45789999998888


Q ss_pred             HHHHHHhcccCcEEEEEeccC
Q psy2961          93 ATNLLRTLVSKGVMVTYGGMS  113 (202)
Q Consensus        93 ~~~~~~~l~~~G~~v~~g~~~  113 (202)
                      +...++.....+.=+.+|+..
T Consensus        54 ~~~~l~~~~~~~~p~ViGTTG   74 (128)
T d1vm6a3          54 LPKTVDLCKKYRAGLVLGTTA   74 (128)
T ss_dssp             HHHHHHHHHHHTCEEEECCCS
T ss_pred             HHHHHHHHHhcCCCEEEEcCC
Confidence            887776666666556667444

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.78  E-value=0.0079  Score=39.14  Aligned_cols=85  Identities=13%  Similarity=0.090  Sum_probs=52.1

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCC-ceEeChhHHHhHHHhhCCCCCeEEEecCCCc
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA-DYVFTEEELRNISRDASIPKPKLALNCVGGN   91 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~-~~v~~~~~~~~~~~~~~~~~~d~vid~~g~~   91 (202)
                      +|.|.|.| .+|...++.++..|.+|++..++++    ..+.+++.|. +...+..+.  +      ...|+||-|+...
T Consensus         2 kI~iIG~G-~mG~~lA~~l~~~g~~V~~~d~~~~----~~~~a~~~~~~~~~~~~~~~--~------~~~DiIilavp~~   68 (165)
T d2f1ka2           2 KIGVVGLG-LIGASLAGDLRRRGHYLIGVSRQQS----TCEKAVERQLVDEAGQDLSL--L------QTAKIIFLCTPIQ   68 (165)
T ss_dssp             EEEEECCS-HHHHHHHHHHHHTTCEEEEECSCHH----HHHHHHHTTSCSEEESCGGG--G------TTCSEEEECSCHH
T ss_pred             EEEEEeec-HHHHHHHHHHHHCCCEEEEEECCch----HHHHHHHhhccceeeeeccc--c------cccccccccCcHh
Confidence            58899998 9999988888899999888765544    5677777764 333321110  1      4567777666544


Q ss_pred             hHHHH----HHhcccCcEEEEEe
Q psy2961          92 SATNL----LRTLVSKGVMVTYG  110 (202)
Q Consensus        92 ~~~~~----~~~l~~~G~~v~~g  110 (202)
                      .....    ...+.++..++.++
T Consensus        69 ~~~~vl~~l~~~l~~~~iv~~~~   91 (165)
T d2f1ka2          69 LILPTLEKLIPHLSPTAIVTDVA   91 (165)
T ss_dssp             HHHHHHHHHGGGSCTTCEEEECC
T ss_pred             hhhhhhhhhhhhcccccceeecc
Confidence            33332    23344445444443

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=96.77  E-value=0.0022  Score=43.29  Aligned_cols=87  Identities=16%  Similarity=0.208  Sum_probs=58.0

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhCCCCCeEEEec
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNC   87 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~~~~~d~vid~   87 (202)
                      -.|.+|.|.|.| .+|..++++++.+|++|++.......     +.....+...+   .++.+ +.      ..|+|+-+
T Consensus        47 L~gktvgIiG~G-~IG~~va~~l~~fg~~v~~~d~~~~~-----~~~~~~~~~~~---~~l~~ll~------~sD~i~~~  111 (193)
T d1mx3a1          47 IRGETLGIIGLG-RVGQAVALRAKAFGFNVLFYDPYLSD-----GVERALGLQRV---STLQDLLF------HSDCVTLH  111 (193)
T ss_dssp             CTTCEEEEECCS-HHHHHHHHHHHTTTCEEEEECTTSCT-----THHHHHTCEEC---SSHHHHHH------HCSEEEEC
T ss_pred             eeCceEEEeccc-cccccceeeeeccccceeeccCcccc-----cchhhhccccc---cchhhccc------cCCEEEEe
Confidence            468899999999 99999999999999999987765442     23333444332   22333 22      23666554


Q ss_pred             CC-CchH-----HHHHHhcccCcEEEEEe
Q psy2961          88 VG-GNSA-----TNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        88 ~g-~~~~-----~~~~~~l~~~G~~v~~g  110 (202)
                      .. .+.+     ...+..|+++..+|.++
T Consensus       112 ~plt~~T~~li~~~~l~~mk~~a~lIN~s  140 (193)
T d1mx3a1         112 CGLNEHNHHLINDFTVKQMRQGAFLVNTA  140 (193)
T ss_dssp             CCCCTTCTTSBSHHHHTTSCTTEEEEECS
T ss_pred             ecccccchhhhhHHHHhccCCCCeEEecC
Confidence            43 2222     23678899998888876

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.77  E-value=0.0014  Score=48.46  Aligned_cols=74  Identities=11%  Similarity=0.100  Sum_probs=48.6

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCC-ceE-eChhHHHhHHHhhCCCCCeEEEe
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA-DYV-FTEEELRNISRDASIPKPKLALN   86 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~-~~v-~~~~~~~~~~~~~~~~~~d~vid   86 (202)
                      +.+.+|||+||+|-+|..++..+...|.+|+++.+....     ........ ... .|-.+...+.+..  .++|.|+.
T Consensus        13 ~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~-----~~~~~~~~~~~~~~D~~~~~~~~~~~--~~~d~Vih   85 (363)
T d2c5aa1          13 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNE-----HMTEDMFCDEFHLVDLRVMENCLKVT--EGVDHVFN   85 (363)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCS-----SSCGGGTCSEEEECCTTSHHHHHHHH--TTCSEEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCcc-----chhhhcccCcEEEeechhHHHHHHHh--hcCCeEee
Confidence            457899999999999999999999999999988655432     11111221 222 2333443322222  57899999


Q ss_pred             cCC
Q psy2961          87 CVG   89 (202)
Q Consensus        87 ~~g   89 (202)
                      +++
T Consensus        86 ~a~   88 (363)
T d2c5aa1          86 LAA   88 (363)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            875

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.72  E-value=0.0024  Score=40.19  Aligned_cols=91  Identities=13%  Similarity=0.129  Sum_probs=58.4

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeC-hhHHHhHHHhhCCCCCeEEEecCCCc
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT-EEELRNISRDASIPKPKLALNCVGGN   91 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~-~~~~~~~~~~~~~~~~d~vid~~g~~   91 (202)
                      +++|+|.| .+|..+++.+...|..++++..+++    +.+.+++.+...++. ..+...+.+. +-..+|.++-+++..
T Consensus         2 ~~iIiG~G-~~G~~la~~L~~~g~~vvvid~d~~----~~~~~~~~~~~~~~gd~~~~~~l~~a-~i~~a~~vi~~~~~~   75 (134)
T d2hmva1           2 QFAVIGLG-RFGGSIVKELHRMGHEVLAVDINEE----KVNAYASYATHAVIANATEENELLSL-GIRNFEYVIVAIGAN   75 (134)
T ss_dssp             CEEEECCS-HHHHHHHHHHHHTTCCCEEEESCHH----HHHHTTTTCSEEEECCTTCTTHHHHH-TGGGCSEEEECCCSC
T ss_pred             EEEEECCC-HHHHHHHHHHHHCCCeEEEecCcHH----HHHHHHHhCCcceeeecccchhhhcc-CCccccEEEEEcCch
Confidence            57888998 9999999999999999888877665    677777777766552 2111112222 214578888888765


Q ss_pred             hHHH----HHHhcccCcEEEEE
Q psy2961          92 SATN----LLRTLVSKGVMVTY  109 (202)
Q Consensus        92 ~~~~----~~~~l~~~G~~v~~  109 (202)
                      ....    ....+.+..+++.-
T Consensus        76 ~~~~~~~~~~~~~~~~~~iiar   97 (134)
T d2hmva1          76 IQASTLTTLLLKELDIPNIWVK   97 (134)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEE
T ss_pred             HHhHHHHHHHHHHcCCCcEEee
Confidence            4332    22233444555543

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=96.70  E-value=0.0029  Score=44.68  Aligned_cols=60  Identities=17%  Similarity=0.309  Sum_probs=42.6

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhCCCCCeEEEecCCCc
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNCVGGN   91 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~~~~~d~vid~~g~~   91 (202)
                      +|||+||+|-+|..++..++..|.+|+++.+++-+               +.|+..+.+ +..    ..+|+|+.+++..
T Consensus         3 KIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~~D---------------~~d~~~~~~~l~~----~~~d~vih~a~~~   63 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGKNVEVIPTDVQDLD---------------ITNVLAVNKFFNE----KKPNVVINCAAHT   63 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCC---------------TTCHHHHHHHHHH----HCCSEEEECCCCC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEeechhcc---------------CCCHHHHHHHHHH----cCCCEEEeecccc
Confidence            69999999999999999999999999888755321               123333333 332    3568888887643

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=96.66  E-value=0.0053  Score=41.55  Aligned_cols=80  Identities=21%  Similarity=0.233  Sum_probs=55.8

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCV   88 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~   88 (202)
                      -.|.+|+|.|-| .+|..+++.+...|+++++.....+    +......+|.+.+ ..+++.       ..+.|+++-|.
T Consensus        25 L~gk~v~IqG~G-~VG~~~A~~L~~~Gakvvv~d~d~~----~~~~~~~~g~~~~-~~~~~~-------~~~~DI~iPcA   91 (201)
T d1c1da1          25 LDGLTVLVQGLG-AVGGSLASLAAEAGAQLLVADTDTE----RVAHAVALGHTAV-ALEDVL-------STPCDVFAPCA   91 (201)
T ss_dssp             STTCEEEEECCS-HHHHHHHHHHHHTTCEEEEECSCHH----HHHHHHHTTCEEC-CGGGGG-------GCCCSEEEECS
T ss_pred             CCCCEEEEECCC-HHHHHHHHHHHHCCCEEEEecchHH----HHHHHHhhccccc-Cccccc-------cccceeeeccc
Confidence            378999999998 8999999999999999886554433    5666777777643 333321       15789988777


Q ss_pred             CCchHH-HHHHhcc
Q psy2961          89 GGNSAT-NLLRTLV  101 (202)
Q Consensus        89 g~~~~~-~~~~~l~  101 (202)
                      .+.... ...+.++
T Consensus        92 ~~~~I~~~~a~~i~  105 (201)
T d1c1da1          92 MGGVITTEVARTLD  105 (201)
T ss_dssp             CSCCBCHHHHHHCC
T ss_pred             ccccccHHHHhhhh
Confidence            655443 3555554

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.66  E-value=0.0068  Score=41.27  Aligned_cols=102  Identities=18%  Similarity=0.115  Sum_probs=60.7

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCC-CcEEEEecCcccHHHHHHHHHhcCC-ceEe-ChhHHHhHHHhhCCCCC
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWG-LKTINIVRNRDDIDKLKSYLKSLGA-DYVF-TEEELRNISRDASIPKP   81 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g-~~vi~~~~~~~~~~~~~~~~~~lg~-~~v~-~~~~~~~~~~~~~~~~~   81 (202)
                      ...++||++||=.|+|+  |..+..++...+ .+|+++.-+++......+.++..+- ..++ +..+.....  ..-..+
T Consensus        51 ~l~lkpg~~VLDlGcG~--G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~--~~~~~v  126 (209)
T d1nt2a_          51 RLKLRGDERVLYLGAAS--GTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYS--GIVEKV  126 (209)
T ss_dssp             CCCCCSSCEEEEETCTT--SHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTT--TTCCCE
T ss_pred             cCCCCCCCEEEEeCCcC--CHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccc--cccceE
Confidence            35689999999999974  677888888775 3677777776643333344444432 2222 111111100  111357


Q ss_pred             eEEEecCCCch-----HHHHHHhcccCcEEEEEe
Q psy2961          82 KLALNCVGGNS-----ATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        82 d~vid~~g~~~-----~~~~~~~l~~~G~~v~~g  110 (202)
                      |+++.......     ...+.+.|+|+|.++.+-
T Consensus       127 d~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  160 (209)
T d1nt2a_         127 DLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMV  160 (209)
T ss_dssp             EEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEecccChhhHHHHHHHHHHHhccCCeEEEEE
Confidence            88776554332     223568999999998764

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.62  E-value=0.018  Score=37.76  Aligned_cols=96  Identities=18%  Similarity=0.132  Sum_probs=63.7

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHC-CCcEEEEecCcccHHHHHHHHHhcCCceEeC-hhHHHh-----------HHHhhCCC
Q psy2961          13 VVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVFT-EEELRN-----------ISRDASIP   79 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~-g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~-~~~~~~-----------~~~~~~~~   79 (202)
                      +|.|.|-| -+|...++.+... ..+++.+.+....  +....+...+.+.... .+....           +.+..  .
T Consensus         4 rIaINGfG-RIGR~v~Ral~~~~dieiVaINd~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~   78 (172)
T d2czca2           4 KVGVNGYG-TIGKRVAYAVTKQDDMELIGITKTKPD--FEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLL--E   78 (172)
T ss_dssp             EEEEECCS-HHHHHHHHHHHTCTTEEEEEEEESSCS--HHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHH--T
T ss_pred             EEEEECCC-HHHHHHHHHHHhCCCceEEEEecCCCh--HHHHHhhhcCceeecccccceeeecccCccccchhhhhh--c
Confidence            78999998 8999988877654 4678888765432  2345666666654442 211111           11111  4


Q ss_pred             CCeEEEecCCCchHHH-HHHhcccCcEEEEEeccC
Q psy2961          80 KPKLALNCVGGNSATN-LLRTLVSKGVMVTYGGMS  113 (202)
Q Consensus        80 ~~d~vid~~g~~~~~~-~~~~l~~~G~~v~~g~~~  113 (202)
                      ++|+|+||+|.-...+ +-.++..|-+.|.++.+.
T Consensus        79 ~vDvViEcTG~f~~~~~~~~hl~~G~k~Vi~s~~~  113 (172)
T d2czca2          79 KVDIIVDATPGGIGAKNKPLYEKAGVKAIFQGGEK  113 (172)
T ss_dssp             TCSEEEECCSTTHHHHHHHHHHHHTCEEEECTTSC
T ss_pred             cCCEEEECCCCCCCHHHHHHHHHcCCCEEEECCCC
Confidence            7999999999776554 567888888888877543

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=96.61  E-value=0.011  Score=38.33  Aligned_cols=92  Identities=15%  Similarity=0.220  Sum_probs=67.0

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhc-CCceEeChhHHHhHHHhhCCCCCeEEE
Q psy2961           7 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL-GADYVFTEEELRNISRDASIPKPKLAL   85 (202)
Q Consensus         7 ~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~l-g~~~v~~~~~~~~~~~~~~~~~~d~vi   85 (202)
                      -+-.|++++|.|=| -+|.-.++-++.+|++|+++-..+      ...+++. ..-.+..      +.+..  ...|+++
T Consensus        19 ~~laGk~vvV~GYG-~vGrG~A~~~rg~Ga~V~V~E~DP------i~alqA~mdGf~v~~------~~~a~--~~aDi~v   83 (163)
T d1v8ba1          19 FLISGKIVVICGYG-DVGKGCASSMKGLGARVYITEIDP------ICAIQAVMEGFNVVT------LDEIV--DKGDFFI   83 (163)
T ss_dssp             CCCTTSEEEEECCS-HHHHHHHHHHHHHTCEEEEECSCH------HHHHHHHTTTCEECC------HHHHT--TTCSEEE
T ss_pred             ceecCCEEEEeccc-ccchhHHHHHHhCCCEEEEEecCc------hhhHHHHhcCCccCc------hhHcc--ccCcEEE
Confidence            35689999999999 999999999999999988876544      3445443 1222322      22222  4679999


Q ss_pred             ecCCCchH--HHHHHhcccCcEEEEEeccC
Q psy2961          86 NCVGGNSA--TNLLRTLVSKGVMVTYGGMS  113 (202)
Q Consensus        86 d~~g~~~~--~~~~~~l~~~G~~v~~g~~~  113 (202)
                      -++|....  .+-++.|+.+.-+..+|-..
T Consensus        84 TaTGn~~vI~~~h~~~MKdgaIl~N~GHfd  113 (163)
T d1v8ba1          84 TCTGNVDVIKLEHLLKMKNNAVVGNIGHFD  113 (163)
T ss_dssp             ECCSSSSSBCHHHHTTCCTTCEEEECSSTT
T ss_pred             EcCCCCccccHHHHHHhhCCeEEEeccccc
Confidence            99999764  34688999999999988443

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.60  E-value=0.0081  Score=40.02  Aligned_cols=86  Identities=15%  Similarity=0.116  Sum_probs=58.4

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhCCCCCeEEEec
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNC   87 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~~~~~d~vid~   87 (202)
                      -.|.++.|.|.| .+|..++++++.+|.+|++..+...     .+.....+...    .++.+ +.      ..|+|+-+
T Consensus        42 l~~k~vgiiG~G-~IG~~va~~~~~fg~~v~~~d~~~~-----~~~~~~~~~~~----~~l~ell~------~sDiv~~~  105 (184)
T d1ygya1          42 IFGKTVGVVGLG-RIGQLVAQRIAAFGAYVVAYDPYVS-----PARAAQLGIEL----LSLDDLLA------RADFISVH  105 (184)
T ss_dssp             CTTCEEEEECCS-HHHHHHHHHHHTTTCEEEEECTTSC-----HHHHHHHTCEE----CCHHHHHH------HCSEEEEC
T ss_pred             ccceeeeecccc-chhHHHHHHhhhccceEEeecCCCC-----hhHHhhcCcee----ccHHHHHh------hCCEEEEc
Confidence            467899999998 9999999999999999988876554     22333333332    22333 32      34777665


Q ss_pred             CC-CchH-----HHHHHhcccCcEEEEEe
Q psy2961          88 VG-GNSA-----TNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        88 ~g-~~~~-----~~~~~~l~~~G~~v~~g  110 (202)
                      +. ++.+     .+.++.|+++..+|.++
T Consensus       106 ~Plt~~T~~lin~~~l~~mk~~a~lIN~s  134 (184)
T d1ygya1         106 LPKTPETAGLIDKEALAKTKPGVIIVNAA  134 (184)
T ss_dssp             CCCSTTTTTCBCHHHHTTSCTTEEEEECS
T ss_pred             CCCCchhhhhhhHHHHhhhCCCceEEEec
Confidence            43 3322     23788899999998876

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=96.60  E-value=0.0011  Score=49.13  Aligned_cols=34  Identities=18%  Similarity=0.246  Sum_probs=29.3

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCc
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNR   45 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~   45 (202)
                      +.|||+||+|-+|..++..+...|.+|+++.+..
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            5789999999999999999999999999988754

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=96.59  E-value=0.0017  Score=45.57  Aligned_cols=35  Identities=11%  Similarity=0.260  Sum_probs=30.9

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      +.|||+|+++++|.++++.+...|++|+.+.++++
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~   36 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA   36 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence            35899999999999999999999999988877654

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=96.59  E-value=0.011  Score=39.82  Aligned_cols=84  Identities=20%  Similarity=0.182  Sum_probs=56.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhCCCCCeEEEecC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNCV   88 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~~~~~d~vid~~   88 (202)
                      .|.+|.|+|.| .+|..++++++.+|++|++.....+.      .....+..    ..++.+ +.      ..|+++-++
T Consensus        42 ~gk~vgIiG~G-~IG~~va~~l~~fg~~V~~~d~~~~~------~~~~~~~~----~~~l~~~l~------~sDii~~~~  104 (197)
T d1j4aa1          42 RDQVVGVVGTG-HIGQVFMQIMEGFGAKVITYDIFRNP------ELEKKGYY----VDSLDDLYK------QADVISLHV  104 (197)
T ss_dssp             GGSEEEEECCS-HHHHHHHHHHHHTTCEEEEECSSCCH------HHHHTTCB----CSCHHHHHH------HCSEEEECS
T ss_pred             cCCeEEEeccc-ccchhHHHhHhhhcccccccCccccc------ccccceee----ecccccccc------ccccccccC
Confidence            58899999999 99999999999999999887655431      11112211    123333 32      347777665


Q ss_pred             C-CchH-----HHHHHhcccCcEEEEEe
Q psy2961          89 G-GNSA-----TNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        89 g-~~~~-----~~~~~~l~~~G~~v~~g  110 (202)
                      . .+.+     .+.++.|+++..+|.++
T Consensus       105 plt~~T~~li~~~~l~~mk~~a~lIN~s  132 (197)
T d1j4aa1         105 PDVPANVHMINDESIAKMKQDVVIVNVS  132 (197)
T ss_dssp             CCCGGGTTCBSHHHHHHSCTTEEEEECS
T ss_pred             CccccccccccHHHHhhhCCccEEEecC
Confidence            4 2222     23688999999998876

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=96.57  E-value=0.022  Score=36.76  Aligned_cols=95  Identities=15%  Similarity=0.119  Sum_probs=59.3

Q ss_pred             CEEEEeCCCcHHHH-HHHHHHHHC-CCcEEEEecCcccHHHHHHHHHhcCCceEeC-hhHHHhHHHhhCCCCCeEEEecC
Q psy2961          12 DVVIQNGANSACGQ-NVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVFT-EEELRNISRDASIPKPKLALNCV   88 (202)
Q Consensus        12 ~~VlI~g~~~~vG~-~~i~la~~~-g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~-~~~~~~~~~~~~~~~~d~vid~~   88 (202)
                      -+|.|.|+| .+|. ..+++.+.. ..+++++++++... ....+++++|...... .+++.+   ..+-.++|+||+++
T Consensus         5 irvaIIGaG-~ig~~~~~~~l~~~~~~el~avas~~~~~-~~~~~a~~~~i~~~~~~~d~l~~---~~~~~~iDiVf~AT   79 (157)
T d1nvmb1           5 LKVAIIGSG-NIGTDLMIKVLRNAKYLEMGAMVGIDAAS-DGLARAQRMGVTTTYAGVEGLIK---LPEFADIDFVFDAT   79 (157)
T ss_dssp             EEEEEECCS-HHHHHHHHHHHHHCSSEEEEEEECSCTTC-HHHHHHHHTTCCEESSHHHHHHH---SGGGGGEEEEEECS
T ss_pred             cEEEEEcCc-HHHHHHHHHHHhhCCcceEEEEEecchhc-cchhhhhhcCCcccccceeeeee---cccccccCEEEEcC
Confidence            478999965 8886 567787755 55788888754321 1356778888776543 223222   11125799999988


Q ss_pred             CCc-hHHH--HHHhcccCcEEEEEec
Q psy2961          89 GGN-SATN--LLRTLVSKGVMVTYGG  111 (202)
Q Consensus        89 g~~-~~~~--~~~~l~~~G~~v~~g~  111 (202)
                      ... +...  ..+.++.|-.++....
T Consensus        80 pag~h~~~~~~~~aa~~G~~VID~s~  105 (157)
T d1nvmb1          80 SASAHVQNEALLRQAKPGIRLIDLTP  105 (157)
T ss_dssp             CHHHHHHHHHHHHHHCTTCEEEECST
T ss_pred             CchhHHHhHHHHHHHHcCCEEEEccc
Confidence            753 3333  3455666767777653

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.54  E-value=0.0055  Score=40.66  Aligned_cols=36  Identities=14%  Similarity=0.033  Sum_probs=31.8

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCc
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR   45 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~   45 (202)
                      ..+++|+|.|+| +.|+.++..+...|.+|+..-..+
T Consensus        41 ~~~k~V~IIGaG-PAGL~AA~~la~~G~~Vtl~E~~~   76 (179)
T d1ps9a3          41 VQKKNLAVVGAG-PAGLAFAINAAARGHQVTLFDAHS   76 (179)
T ss_dssp             SSCCEEEEECCS-HHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCCcEEEEECcc-HHHHHHHHHHHhhccceEEEeccC
Confidence            457899999999 999999999999999988887654

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.51  E-value=0.0085  Score=38.55  Aligned_cols=84  Identities=13%  Similarity=0.141  Sum_probs=56.6

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHH-HhcCCceEeChhHHHhHHHhhCCCCCeEEEecCCCc
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGADYVFTEEELRNISRDASIPKPKLALNCVGGN   91 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~g~~   91 (202)
                      +|.+.|+| -+|.+.+.-....|.++++..++++    +.+.+ +++|.....+..+.  +      ...|+||=|+-..
T Consensus         2 kIg~IG~G-~mG~al~~~l~~~~~~i~v~~r~~~----~~~~l~~~~g~~~~~~~~~~--~------~~~dvIilavkp~   68 (152)
T d2ahra2           2 KIGIIGVG-KMASAIIKGLKQTPHELIISGSSLE----RSKEIAEQLALPYAMSHQDL--I------DQVDLVILGIKPQ   68 (152)
T ss_dssp             EEEEECCS-HHHHHHHHHHTTSSCEEEEECSSHH----HHHHHHHHHTCCBCSSHHHH--H------HTCSEEEECSCGG
T ss_pred             EEEEEecc-HHHHHHHHHHHhCCCeEEEEcChHH----hHHhhccccceeeechhhhh--h------hccceeeeecchH
Confidence            57888998 8999888766667888877666654    34444 56777655443332  1      3568888888655


Q ss_pred             hHHHHHHhcccCcEEEEE
Q psy2961          92 SATNLLRTLVSKGVMVTY  109 (202)
Q Consensus        92 ~~~~~~~~l~~~G~~v~~  109 (202)
                      .....++.++++..++.+
T Consensus        69 ~~~~vl~~l~~~~~iis~   86 (152)
T d2ahra2          69 LFETVLKPLHFKQPIISM   86 (152)
T ss_dssp             GHHHHHTTSCCCSCEEEC
T ss_pred             hHHHHhhhcccceeEecc
Confidence            566677777777666654

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.50  E-value=0.00089  Score=44.56  Aligned_cols=36  Identities=14%  Similarity=0.071  Sum_probs=27.1

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      -.|++|+|+|+| +++.+++..+...| ++..+.++.+
T Consensus        16 ~~~k~vlIlGaG-G~arai~~aL~~~~-~i~I~nR~~~   51 (177)
T d1nvta1          16 VKDKNIVIYGAG-GAARAVAFELAKDN-NIIIANRTVE   51 (177)
T ss_dssp             CCSCEEEEECCS-HHHHHHHHHHTSSS-EEEEECSSHH
T ss_pred             cCCCEEEEECCc-HHHHHHHHHHcccc-ceeeehhhhh
Confidence            477899999999 78888877766555 6666666655

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.0079  Score=41.26  Aligned_cols=102  Identities=10%  Similarity=0.073  Sum_probs=61.4

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHC--CCcEEEEecCcccHHHHHHHHHhcCCceEeC-----hhHHH-hHHHhhC
Q psy2961           6 NSLSPGDVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGADYVFT-----EEELR-NISRDAS   77 (202)
Q Consensus         6 ~~~~~g~~VlI~g~~~~vG~~~i~la~~~--g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~-----~~~~~-~~~~~~~   77 (202)
                      .+....++||-.|.+  .|..++.+|+.+  +.+++++-..++.....++.++..|....+.     ..+.. .+.....
T Consensus        55 ~~~~~~k~vLEiGt~--~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~  132 (219)
T d2avda1          55 ARLIQAKKALDLGTF--TGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGE  132 (219)
T ss_dssp             HHHTTCCEEEEECCT--TSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTC
T ss_pred             HHccCCCeEEEEech--hhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcc
Confidence            344567899999986  688888888876  4677777766654333345555556543221     12221 2222222


Q ss_pred             CCCCeEEEecCCCc-h---HHHHHHhcccCcEEEEE
Q psy2961          78 IPKPKLALNCVGGN-S---ATNLLRTLVSKGVMVTY  109 (202)
Q Consensus        78 ~~~~d~vid~~g~~-~---~~~~~~~l~~~G~~v~~  109 (202)
                      ...+|+||--.... +   +..+++.|++||.++.=
T Consensus       133 ~~~fD~ifiD~dk~~y~~~~~~~~~lL~~GGvii~D  168 (219)
T d2avda1         133 AGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVL  168 (219)
T ss_dssp             TTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCCccEEEEeCCHHHHHHHHHHHHHHhcCCcEEEEe
Confidence            35689876544333 2   23478899999999873

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=96.45  E-value=0.0021  Score=44.59  Aligned_cols=92  Identities=13%  Similarity=0.206  Sum_probs=60.9

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEec
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNC   87 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~   87 (202)
                      +.++.+||=.|+|  .|..+..+++ .|++|+++.-+++    ..+.+++.+...++.. +..++.  .....+|+|+..
T Consensus        40 ~~~~~~vLDiGcG--~G~~~~~l~~-~~~~v~giD~s~~----~l~~a~~~~~~~~~~~-~~~~l~--~~~~~fD~ii~~  109 (246)
T d2avna1          40 LKNPCRVLDLGGG--TGKWSLFLQE-RGFEVVLVDPSKE----MLEVAREKGVKNVVEA-KAEDLP--FPSGAFEAVLAL  109 (246)
T ss_dssp             CCSCCEEEEETCT--TCHHHHHHHT-TTCEEEEEESCHH----HHHHHHHHTCSCEEEC-CTTSCC--SCTTCEEEEEEC
T ss_pred             cCCCCEEEEECCC--Cchhcccccc-cceEEEEeecccc----cccccccccccccccc-cccccc--cccccccceeee
Confidence            4577899988887  5888888876 5899888887765    5778877666554421 111111  223579998864


Q ss_pred             CCC------c-h-HHHHHHhcccCcEEEEE
Q psy2961          88 VGG------N-S-ATNLLRTLVSKGVMVTY  109 (202)
Q Consensus        88 ~g~------~-~-~~~~~~~l~~~G~~v~~  109 (202)
                      ...      + . +.++.++|+|||.++..
T Consensus       110 ~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~  139 (246)
T d2avna1         110 GDVLSYVENKDKAFSEIRRVLVPDGLLIAT  139 (246)
T ss_dssp             SSHHHHCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cchhhhhhhHHHHHHHHHhhcCcCcEEEEE
Confidence            431      1 1 23467899999998764

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.42  E-value=0.0058  Score=40.65  Aligned_cols=83  Identities=18%  Similarity=0.226  Sum_probs=57.2

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCV   88 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~   88 (202)
                      -.|.+|.|+|.| .+|...+++++.+|++|++..+.+.+           +.....  .++.+   ..  ...|+|+-++
T Consensus        40 l~gk~vgIiG~G-~IG~~va~~l~~~g~~v~~~d~~~~~-----------~~~~~~--~~l~e---ll--~~sDiv~~~~  100 (181)
T d1qp8a1          40 IQGEKVAVLGLG-EIGTRVGKILAALGAQVRGFSRTPKE-----------GPWRFT--NSLEE---AL--REARAAVCAL  100 (181)
T ss_dssp             CTTCEEEEESCS-THHHHHHHHHHHTTCEEEEECSSCCC-----------SSSCCB--SCSHH---HH--TTCSEEEECC
T ss_pred             ccCceEEEeccc-cccccceeeeeccccccccccccccc-----------cceeee--echhh---hh--hccchhhccc
Confidence            358899999999 89999999999999999888755431           111111  12222   22  4568887765


Q ss_pred             C-CchH-----HHHHHhcccCcEEEEEe
Q psy2961          89 G-GNSA-----TNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        89 g-~~~~-----~~~~~~l~~~G~~v~~g  110 (202)
                      . ++.+     .+.++.|+++..+|.++
T Consensus       101 pl~~~t~~li~~~~l~~mk~~ailIN~~  128 (181)
T d1qp8a1         101 PLNKHTRGLVKYQHLALMAEDAVFVNVG  128 (181)
T ss_dssp             CCSTTTTTCBCHHHHTTSCTTCEEEECS
T ss_pred             ccccccccccccceeeeccccceEEecc
Confidence            4 2221     23788999999999976

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=96.42  E-value=0.0048  Score=43.77  Aligned_cols=80  Identities=18%  Similarity=0.270  Sum_probs=50.3

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccH--HHHHHHHH---hcCCceEe-ChhHHHhHHHhhCCCCCeEE
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDI--DKLKSYLK---SLGADYVF-TEEELRNISRDASIPKPKLA   84 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~--~~~~~~~~---~lg~~~v~-~~~~~~~~~~~~~~~~~d~v   84 (202)
                      ..+|||+||+|-+|..++..+...|.+|++++++....  .++...+.   ..+.+.+. |..+.....+..  .+.+.+
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~v   80 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAV--KNVDVV   80 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHH--HTCSEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhh--hhceee
Confidence            36899999999999999999999999999998765432  11222232   23444433 222222222222  356788


Q ss_pred             EecCCCch
Q psy2961          85 LNCVGGNS   92 (202)
Q Consensus        85 id~~g~~~   92 (202)
                      +.+.+...
T Consensus        81 i~~~~~~~   88 (307)
T d1qyca_          81 ISTVGSLQ   88 (307)
T ss_dssp             EECCCGGG
T ss_pred             eecccccc
Confidence            88776543

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.40  E-value=0.003  Score=45.98  Aligned_cols=34  Identities=12%  Similarity=0.258  Sum_probs=30.9

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCc
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNR   45 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~   45 (202)
                      .++||+||+|-+|..++..+...|++|+++.+..
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~   35 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRS   35 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCC
Confidence            5799999999999999999999999999999753

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.37  E-value=0.0038  Score=46.92  Aligned_cols=42  Identities=24%  Similarity=0.294  Sum_probs=34.4

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCccc
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDD   47 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~~   47 (202)
                      +..++++|++++=+|+|  +|..+.++|+..|+ +++++.-++..
T Consensus       210 ~~l~Lkpgd~fLDLGCG--~G~~vl~aA~~~g~~~v~GIDiS~~~  252 (406)
T d1u2za_         210 QQCQLKKGDTFMDLGSG--VGNCVVQAALECGCALSFGCEIMDDA  252 (406)
T ss_dssp             HHTTCCTTCEEEEESCT--TSHHHHHHHHHHCCSEEEEEECCHHH
T ss_pred             HHhCCCCCCEEEeCCCC--CcHHHHHHHHHcCCCeEEEEeCCHHH
Confidence            45789999998777775  79999999999987 67888777653

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.35  E-value=0.0013  Score=47.82  Aligned_cols=32  Identities=9%  Similarity=0.107  Sum_probs=29.1

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEec
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVR   43 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~   43 (202)
                      ++|||+||+|-+|..++..+...|.+|+++.+
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~   33 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDN   33 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence            58999999999999999888889999998865

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=96.34  E-value=0.0077  Score=40.66  Aligned_cols=84  Identities=14%  Similarity=0.142  Sum_probs=55.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecC-
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCV-   88 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~-   88 (202)
                      .|.+|.|.|.| .+|..++++++.+|++|++.......     .      ....+...++.++..     ..|++.-++ 
T Consensus        44 ~~ktvgIiG~G-~IG~~va~~l~~fg~~v~~~d~~~~~-----~------~~~~~~~~~l~~l~~-----~~D~v~~~~p  106 (199)
T d1dxya1          44 GQQTVGVMGTG-HIGQVAIKLFKGFGAKVIAYDPYPMK-----G------DHPDFDYVSLEDLFK-----QSDVIDLHVP  106 (199)
T ss_dssp             GGSEEEEECCS-HHHHHHHHHHHHTTCEEEEECSSCCS-----S------CCTTCEECCHHHHHH-----HCSEEEECCC
T ss_pred             cceeeeeeecc-cccccccccccccceeeeccCCccch-----h------hhcchhHHHHHHHHH-----hcccceeeec
Confidence            57899999999 89999999999999999988765431     0      000111223333211     236665544 


Q ss_pred             CCchH-----HHHHHhcccCcEEEEEe
Q psy2961          89 GGNSA-----TNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        89 g~~~~-----~~~~~~l~~~G~~v~~g  110 (202)
                      ..+.+     ...+..|+++..+|.++
T Consensus       107 lt~~T~~li~~~~l~~mk~~a~lIN~a  133 (199)
T d1dxya1         107 GIEQNTHIINEAAFNLMKPGAIVINTA  133 (199)
T ss_dssp             CCGGGTTSBCHHHHHHSCTTEEEEECS
T ss_pred             ccccccccccHHHhhccCCceEEEecc
Confidence            33332     23688999999999987

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=96.27  E-value=0.016  Score=38.65  Aligned_cols=89  Identities=16%  Similarity=0.090  Sum_probs=57.8

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCV   88 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~   88 (202)
                      -.|.+|.|.|.| .+|...++.++.+|.+|++..+....    ....+..+.....+.++.  +      ...|+|+-+.
T Consensus        42 l~~~~vgiiG~G-~IG~~va~~l~~fg~~v~~~d~~~~~----~~~~~~~~~~~~~~l~~~--l------~~sD~v~~~~  108 (188)
T d2naca1          42 LEAMHVGTVAAG-RIGLAVLRRLAPFDVHLHYTDRHRLP----ESVEKELNLTWHATREDM--Y------PVCDVVTLNC  108 (188)
T ss_dssp             CTTCEEEEECCS-HHHHHHHHHHGGGTCEEEEECSSCCC----HHHHHHHTCEECSSHHHH--G------GGCSEEEECS
T ss_pred             ccccceeecccc-ccchhhhhhhhccCceEEEEeecccc----ccccccccccccCCHHHH--H------Hhccchhhcc
Confidence            357899999999 99999999999999999888765542    233334443332221221  2      2456765544


Q ss_pred             C-CchH-----HHHHHhcccCcEEEEEe
Q psy2961          89 G-GNSA-----TNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        89 g-~~~~-----~~~~~~l~~~G~~v~~g  110 (202)
                      . ++.+     .+.+..|+++..+|.++
T Consensus       109 plt~~T~~li~~~~l~~mk~ga~lIN~a  136 (188)
T d2naca1         109 PLHPETEHMINDETLKLFKRGAYIVNTA  136 (188)
T ss_dssp             CCCTTTTTCBSHHHHTTSCTTEEEEECS
T ss_pred             cccccchhhhHHHHHHhCCCCCEEEecC
Confidence            3 2221     23678888888888876

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.27  E-value=0.0046  Score=44.30  Aligned_cols=98  Identities=9%  Similarity=0.062  Sum_probs=55.6

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCce-----EeChhHHHhH-HHhhCCCCC
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-----VFTEEELRNI-SRDASIPKP   81 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~-----v~~~~~~~~~-~~~~~~~~~   81 (202)
                      .+++.+||=.|+|  .|..++.+++. |++|+++.-+++.++...+.....+...     .+...++..+ ........+
T Consensus        54 ~~~~~~vLD~GcG--~G~~~~~la~~-g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f  130 (292)
T d1xvaa_          54 QHGCHRVLDVACG--TGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGF  130 (292)
T ss_dssp             HTTCCEEEESSCT--TSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCE
T ss_pred             hcCCCEEEEecCC--CcHHHHHHHHc-CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCc
Confidence            3567899999987  57888888875 8999988877763222222222222211     1111111111 111123578


Q ss_pred             eEEEecCCC------c---------hHHHHHHhcccCcEEEE
Q psy2961          82 KLALNCVGG------N---------SATNLLRTLVSKGVMVT  108 (202)
Q Consensus        82 d~vid~~g~------~---------~~~~~~~~l~~~G~~v~  108 (202)
                      |.|+.....      +         .+..+.+.|+|||.++.
T Consensus       131 d~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~  172 (292)
T d1xvaa_         131 DAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI  172 (292)
T ss_dssp             EEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             eEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEE
Confidence            988854321      0         23347789999999886

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.22  E-value=0.0041  Score=41.35  Aligned_cols=44  Identities=11%  Similarity=0.111  Sum_probs=34.3

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHH
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK   56 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~   56 (202)
                      +|.|.|++|++|.++++.+...|++|+...+++++.++..+.+.
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~   45 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYR   45 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            57888776799999999999999999999888775433334343

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.15  E-value=0.0057  Score=41.85  Aligned_cols=98  Identities=15%  Similarity=0.197  Sum_probs=56.6

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHC--CCcEEEEecCcccHHHHHHHHHhcCCceEe-----ChhHHHh-HHHhhCCCC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGADYVF-----TEEELRN-ISRDASIPK   80 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~--g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-----~~~~~~~-~~~~~~~~~   80 (202)
                      ....+||-+|.+  .|..++.+|+.+  +.+++++...++..+...+.++..|...-+     +..+.-. +.+..+...
T Consensus        55 ~kpk~ILEiGt~--~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~  132 (214)
T d2cl5a1          55 YSPSLVLELGAY--CGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDT  132 (214)
T ss_dssp             HCCSEEEEECCT--TSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCC
T ss_pred             hCCCEEEEEccC--chhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccc
Confidence            345789999886  577788888865  567888776665433344445555653211     2233333 444444457


Q ss_pred             CeEEEecCC-CchH-----HHHHHhcccCcEEEE
Q psy2961          81 PKLALNCVG-GNSA-----TNLLRTLVSKGVMVT  108 (202)
Q Consensus        81 ~d~vid~~g-~~~~-----~~~~~~l~~~G~~v~  108 (202)
                      +|++|--.. ....     ...++.|+|||.++.
T Consensus       133 ~D~ifiD~~~~~~~~~~~l~~~~~lLkpGGvIv~  166 (214)
T d2cl5a1         133 LDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLA  166 (214)
T ss_dssp             EEEEEECSCGGGHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             cceeeecccccccccHHHHHHHhCccCCCcEEEE
Confidence            898764332 2221     123456899986654

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=96.14  E-value=0.014  Score=37.44  Aligned_cols=81  Identities=19%  Similarity=0.222  Sum_probs=46.9

Q ss_pred             EEEEeCCCcHHHHHHHH-HHHHCCCcEEEEecCcccHHHHHHHH-HhcCCceEeChhHHHhHHHhhCCCCCeEEEecCCC
Q psy2961          13 VVIQNGANSACGQNVIQ-IARHWGLKTINIVRNRDDIDKLKSYL-KSLGADYVFTEEELRNISRDASIPKPKLALNCVGG   90 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~-la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~g~   90 (202)
                      +|.+.|+| .+|.+.++ +.+.-+.++++..++++    +.+.+ +++|....-+.+..         ...|+||=|+-.
T Consensus         2 kI~fIG~G-~MG~ai~~~l~~~~~~~i~v~~r~~~----~~~~l~~~~~~~~~~~~~~v---------~~~Div~lavkP   67 (152)
T d1yqga2           2 NVYFLGGG-NMAAAVAGGLVKQGGYRIYIANRGAE----KRERLEKELGVETSATLPEL---------HSDDVLILAVKP   67 (152)
T ss_dssp             EEEEECCS-HHHHHHHHHHHHHCSCEEEEECSSHH----HHHHHHHHTCCEEESSCCCC---------CTTSEEEECSCH
T ss_pred             EEEEEcCc-HHHHHHHHHHHHCCCCcEEEEeCChh----HHHHhhhhcccccccccccc---------cccceEEEecCH
Confidence            57888998 99998777 55554466666655554    45555 44665433222211         345777766654


Q ss_pred             chHHHHHHhcccCcEEE
Q psy2961          91 NSATNLLRTLVSKGVMV  107 (202)
Q Consensus        91 ~~~~~~~~~l~~~G~~v  107 (202)
                      ......++-+++.++++
T Consensus        68 ~~~~~v~~~l~~~~~~v   84 (152)
T d1yqga2          68 QDMEAACKNIRTNGALV   84 (152)
T ss_dssp             HHHHHHHTTCCCTTCEE
T ss_pred             HHHHHhHHHHhhcccEE
Confidence            44444555555555444

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.12  E-value=0.034  Score=40.36  Aligned_cols=100  Identities=20%  Similarity=0.179  Sum_probs=56.2

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcccHHHHHHHHHhcCCce-E-eChhHHHh-HHHh-hCCCCCe
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADY-V-FTEEELRN-ISRD-ASIPKPK   82 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~-v-~~~~~~~~-~~~~-~~~~~~d   82 (202)
                      +++|++||=.+++  +|..++.+|+. |+ +|+++..+++..+...+-++..|... + +...|..+ +... ..+..||
T Consensus       143 ~~~g~~VLDl~~g--~G~~si~~a~~-ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD  219 (324)
T d2as0a2         143 VQPGDRVLDVFTY--TGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFD  219 (324)
T ss_dssp             CCTTCEEEETTCT--TTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             cCCCCeeecccCc--ccchhhhhhhc-CCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCC
Confidence            5789999888775  46666666654 66 57777766653222223334456531 1 11223323 3222 2346799


Q ss_pred             EEEe-cC--CCc-------------hHHHHHHhcccCcEEEEEe
Q psy2961          83 LALN-CV--GGN-------------SATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        83 ~vid-~~--g~~-------------~~~~~~~~l~~~G~~v~~g  110 (202)
                      +|+- .-  +..             ....++++|+|||.++.+.
T Consensus       220 ~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s  263 (324)
T d2as0a2         220 IVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCS  263 (324)
T ss_dssp             EEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             chhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            9874 22  111             1122567899999999876

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.028  Score=40.81  Aligned_cols=31  Identities=16%  Similarity=0.184  Sum_probs=28.5

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEe
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIV   42 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~   42 (202)
                      ++|||+||+|-+|..++..+...|.+|+++.
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld   33 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVID   33 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCEEEEEE
Confidence            6899999999999999999989999999874

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.10  E-value=0.0083  Score=40.58  Aligned_cols=68  Identities=16%  Similarity=0.114  Sum_probs=42.0

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--cEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhCCCCCeEEEecC
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGL--KTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNCV   88 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~--~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~~~~~d~vid~~   88 (202)
                      ++|||+||+|-+|..+++.+...|.  +|+..++++..      ..    ........++.+ ....  ...+|.|+.|+
T Consensus         3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~------~~----~~~~~~~~d~~~~~~~~--~~~~d~vi~~~   70 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA------EH----PRLDNPVGPLAELLPQL--DGSIDTAFCCL   70 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC------CC----TTEECCBSCHHHHGGGC--CSCCSEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchh------hc----ccccccccchhhhhhcc--ccchheeeeee
Confidence            6899999999999999998888886  45555444321      00    011111223333 2222  24689999998


Q ss_pred             CCc
Q psy2961          89 GGN   91 (202)
Q Consensus        89 g~~   91 (202)
                      |..
T Consensus        71 g~~   73 (212)
T d2a35a1          71 GTT   73 (212)
T ss_dssp             CCC
T ss_pred             eee
Confidence            753

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.09  E-value=0.0078  Score=40.39  Aligned_cols=97  Identities=18%  Similarity=0.187  Sum_probs=57.5

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCCCeEEEe
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALN   86 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~vid   86 (202)
                      +++| +||=+|+|  .|..+..+++ .|++|+++.-+++.++.....++..+.+.+. ...|+   .+......||+|+.
T Consensus        29 ~~~g-rvLDiGcG--~G~~~~~la~-~g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~---~~~~~~~~fD~I~~  101 (198)
T d2i6ga1          29 VAPG-RTLDLGCG--NGRNSLYLAA-NGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDL---NTLTFDGEYDFILS  101 (198)
T ss_dssp             SCSC-EEEEETCT--TSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCT---TTCCCCCCEEEEEE
T ss_pred             CCCC-cEEEECCC--CCHHHHHHHH-HhhhhccccCcHHHHHHHHHHhhhccccchhhhheec---ccccccccccEEEE
Confidence            3455 89999987  5777877776 5899888877765433223334445554322 11121   11112356899986


Q ss_pred             cCCCc-----h----HHHHHHhcccCcEEEEEec
Q psy2961          87 CVGGN-----S----ATNLLRTLVSKGVMVTYGG  111 (202)
Q Consensus        87 ~~g~~-----~----~~~~~~~l~~~G~~v~~g~  111 (202)
                      ...-.     .    +..+.++|+|+|.++....
T Consensus       102 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  135 (198)
T d2i6ga1         102 TVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAA  135 (198)
T ss_dssp             ESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             eeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            44221     1    2235678999999988653

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.08  E-value=0.092  Score=34.47  Aligned_cols=93  Identities=10%  Similarity=0.113  Sum_probs=57.4

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHC-CCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-----------HHHhhCCCC
Q psy2961          13 VVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-----------ISRDASIPK   80 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~-g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-----------~~~~~~~~~   80 (202)
                      +|.|.|-| -+|..+++.+... ..+++++.+....  .....+...+.......+....           +.+..  .+
T Consensus         3 KVaINGfG-RIGR~v~Ral~~~~dievVaInd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~--~~   77 (178)
T d1b7go1           3 NVAVNGYG-TIGKRVADAIIKQPDMKLVGVAKTSPN--YEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLI--KT   77 (178)
T ss_dssp             EEEEECCS-HHHHHHHHHHHTCTTEEEEEEECSSCS--HHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHH--HH
T ss_pred             EEEEECCC-HHHHHHHHHHHhCCCCEEEEEECCCCc--HHHHHhcccCcceeccCccceeccccceecCCchhhhh--hc
Confidence            68899987 8999999988865 4688888776543  1334444444443332211110           11111  35


Q ss_pred             CeEEEecCCCchHHH-HHHhcccCcEEEEEe
Q psy2961          81 PKLALNCVGGNSATN-LLRTLVSKGVMVTYG  110 (202)
Q Consensus        81 ~d~vid~~g~~~~~~-~~~~l~~~G~~v~~g  110 (202)
                      +|+|+||+|.-...+ +-.++..+-+++..+
T Consensus        78 vDiViecTG~f~~~e~a~~hl~~G~KvIi~~  108 (178)
T d1b7go1          78 SDIVVDTTPNGVGAQYKPIYLQLQRNAIFQG  108 (178)
T ss_dssp             CSEEEECCSTTHHHHHHHHHHHTTCEEEECT
T ss_pred             CCEEEECCCCcCCHHHHHHHHHcCCEEEEEC
Confidence            899999999765444 556676666776654

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.06  E-value=0.0045  Score=43.74  Aligned_cols=97  Identities=13%  Similarity=0.059  Sum_probs=58.1

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCc---eEeChhHHHhHHHhhCCCCCeEE
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD---YVFTEEELRNISRDASIPKPKLA   84 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~---~v~~~~~~~~~~~~~~~~~~d~v   84 (202)
                      +++|++||-.++|  +|..++.+|+.-.++|+++--+++..+-..+-++..+.+   .++. .|.   .+......+|.|
T Consensus       105 ~~~g~~VlD~~aG--~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~-~D~---~~~~~~~~~D~I  178 (260)
T d2frna1         105 AKPDELVVDMFAG--IGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYN-MDN---RDFPGENIADRI  178 (260)
T ss_dssp             CCTTCEEEETTCT--TTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEEC-SCT---TTCCCCSCEEEE
T ss_pred             cCCccEEEECcce--EcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEE-cch---HHhccCCCCCEE
Confidence            5799999999886  688888888875568888887776322222223334443   2222 121   122223458866


Q ss_pred             E-ecC-CCc-hHHHHHHhcccCcEEEEEe
Q psy2961          85 L-NCV-GGN-SATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        85 i-d~~-g~~-~~~~~~~~l~~~G~~v~~g  110 (202)
                      + +.. ... ....+++.+++||.+....
T Consensus       179 i~~~p~~~~~~l~~a~~~l~~gG~lh~~~  207 (260)
T d2frna1         179 LMGYVVRTHEFIPKALSIAKDGAIIHYHN  207 (260)
T ss_dssp             EECCCSSGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             EECCCCchHHHHHHHHhhcCCCCEEEEEe
Confidence            5 322 222 3345889999999876554

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.06  E-value=0.0064  Score=39.00  Aligned_cols=33  Identities=12%  Similarity=0.069  Sum_probs=29.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEec
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVR   43 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~   43 (202)
                      .|.+|||.|+| .+|..-+..+...|++|++++.
T Consensus        12 ~gkrvLViGgG-~va~~ka~~Ll~~GA~VtVvap   44 (150)
T d1kyqa1          12 KDKRILLIGGG-EVGLTRLYKLMPTGCKLTLVSP   44 (150)
T ss_dssp             TTCEEEEEEES-HHHHHHHHHHGGGTCEEEEEEE
T ss_pred             CCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEeC
Confidence            67999999998 8999999999999999888864

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.05  E-value=0.037  Score=35.90  Aligned_cols=88  Identities=18%  Similarity=0.093  Sum_probs=51.2

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCC--cEEEEecCcccHHHHHHHHHhcCC-ceEeChhHHHhHHHhhCCCCCeEEEecCC
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGL--KTINIVRNRDDIDKLKSYLKSLGA-DYVFTEEELRNISRDASIPKPKLALNCVG   89 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~--~vi~~~~~~~~~~~~~~~~~~lg~-~~v~~~~~~~~~~~~~~~~~~d~vid~~g   89 (202)
                      +|+|.|.| -+|...+.-++..|.  ++++...+++    ..+.+++.+. +.+....+..      .....|+|+-|+.
T Consensus         3 ~I~IIG~G-~mG~sla~~L~~~g~~~~I~~~D~~~~----~~~~a~~~~~~~~~~~~~~~~------~~~~~dlIila~p   71 (171)
T d2g5ca2           3 NVLIVGVG-FMGGSFAKSLRRSGFKGKIYGYDINPE----SISKAVDLGIIDEGTTSIAKV------EDFSPDFVMLSSP   71 (171)
T ss_dssp             EEEEESCS-HHHHHHHHHHHHTTCCSEEEEECSCHH----HHHHHHHTTSCSEEESCGGGG------GGTCCSEEEECSC
T ss_pred             EEEEEccC-HHHHHHHHHHHhcCCCeEEEEEECChH----HHHHHHHhhcchhhhhhhhhh------hccccccccccCC
Confidence            68999998 999999998888885  5566555544    5677777764 3332211100      0024566666665


Q ss_pred             CchHHH----HHHhcccCcEEEEEec
Q psy2961          90 GNSATN----LLRTLVSKGVMVTYGG  111 (202)
Q Consensus        90 ~~~~~~----~~~~l~~~G~~v~~g~  111 (202)
                      ......    +.+.+.++..++.++.
T Consensus        72 ~~~~~~vl~~l~~~~~~~~ii~d~~s   97 (171)
T d2g5ca2          72 VRTFREIAKKLSYILSEDATVTDQGS   97 (171)
T ss_dssp             HHHHHHHHHHHHHHSCTTCEEEECCS
T ss_pred             chhhhhhhhhhhcccccccccccccc
Confidence            443322    3344555555555543

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.04  E-value=0.012  Score=36.07  Aligned_cols=38  Identities=11%  Similarity=0.243  Sum_probs=32.8

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCc
Q psy2961           7 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR   45 (202)
Q Consensus         7 ~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~   45 (202)
                      +++..++|+|.|+| .+|.-++..++.+|.+|..+.+.+
T Consensus        18 ~l~~p~~v~IiGgG-~iG~E~A~~l~~~g~~Vtlv~~~~   55 (117)
T d1onfa2          18 NIKESKKIGIVGSG-YIAVELINVIKRLGIDSYIFARGN   55 (117)
T ss_dssp             TCCCCSEEEEECCS-HHHHHHHHHHHTTTCEEEEECSSS
T ss_pred             ccCCCCEEEEECCc-hHHHHHHHHHHhccccceeeehhc
Confidence            34556899999999 999999999999999999888665

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=96.02  E-value=0.068  Score=34.87  Aligned_cols=94  Identities=17%  Similarity=0.213  Sum_probs=59.5

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCC-CcEEEEecCcccHHHHHHHHHhcCCceEeChhH----HHh--------HHHhhCCC
Q psy2961          13 VVIQNGANSACGQNVIQIARHWG-LKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE----LRN--------ISRDASIP   79 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g-~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~----~~~--------~~~~~~~~   79 (202)
                      +|.|.|-| -+|..+.+++...+ .+++++......  .....+..++.+......+    +..        ..+..  .
T Consensus         3 ~VgINGfG-RIGR~v~R~l~~~~di~vvaInd~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~--~   77 (171)
T d1cf2o1           3 AVAINGYG-TVGKRVADAIAQQDDMKVIGVSKTRPD--FEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDML--D   77 (171)
T ss_dssp             EEEEECCS-HHHHHHHHHHHTSSSEEEEEEEESSCS--HHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHH--H
T ss_pred             EEEEEcCc-HHHHHHHHHHHhCCCceEEEEecCCcH--HHHHHHHhcCCceEecccccceeecccCcccCCChhHhh--c
Confidence            68999988 89999999877654 577777765432  1345555566554332111    110        11211  4


Q ss_pred             CCeEEEecCCCchHHH-HHHhcccCcEEEEEec
Q psy2961          80 KPKLALNCVGGNSATN-LLRTLVSKGVMVTYGG  111 (202)
Q Consensus        80 ~~d~vid~~g~~~~~~-~~~~l~~~G~~v~~g~  111 (202)
                      ++|+|+||+|.-.... +-..+..|-+.|..+.
T Consensus        78 ~vDvViEcTG~f~~~~~~~~hl~~G~K~vi~~~  110 (171)
T d1cf2o1          78 EADIVIDCTPEGIGAKNLKMYKEKGIKAIFQGG  110 (171)
T ss_dssp             TCSEEEECCSTTHHHHHHHHHHHTTCEEEECTT
T ss_pred             CCCEEEEccCCCCCHHHHHHHHHcCCCEEEECC
Confidence            6999999999765544 5567777777777653

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.01  E-value=0.019  Score=39.49  Aligned_cols=101  Identities=14%  Similarity=0.112  Sum_probs=62.1

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHC--CCcEEEEecCcccHHHHHHHHHhcCCceEeC--hhHHHh-HHHh----hC
Q psy2961           7 SLSPGDVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGADYVFT--EEELRN-ISRD----AS   77 (202)
Q Consensus         7 ~~~~g~~VlI~g~~~~vG~~~i~la~~~--g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~--~~~~~~-~~~~----~~   77 (202)
                      +....++||-.|.+  +|..++.+|+.+  +.+++++...++......+..++.|...-+.  ..+..+ +.+.    ..
T Consensus        56 ~~~~~k~iLEiGT~--~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~  133 (227)
T d1susa1          56 KLINAKNTMEIGVY--TGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKN  133 (227)
T ss_dssp             HHHTCCEEEEECCG--GGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGG
T ss_pred             HhcCCCcEEEecch--hhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhcccc
Confidence            33456899999886  688888888876  4677777777664434445556667643221  122222 2222    12


Q ss_pred             CCCCeEEE-ecCCCch---HHHHHHhcccCcEEEEE
Q psy2961          78 IPKPKLAL-NCVGGNS---ATNLLRTLVSKGVMVTY  109 (202)
Q Consensus        78 ~~~~d~vi-d~~g~~~---~~~~~~~l~~~G~~v~~  109 (202)
                      ...||+|| |+--..+   +..++++|++||.++.=
T Consensus       134 ~~~fD~iFiDa~k~~y~~~~e~~~~ll~~gGiii~D  169 (227)
T d1susa1         134 HGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYD  169 (227)
T ss_dssp             TTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEE
T ss_pred             CCceeEEEeccchhhhHHHHHHHHhhcCCCcEEEEc
Confidence            35699975 5444332   23478899999998873

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=95.98  E-value=0.021  Score=38.15  Aligned_cols=87  Identities=14%  Similarity=0.149  Sum_probs=56.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhCCCCCeEEEecC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNCV   88 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~~~~~d~vid~~   88 (202)
                      .|.+|.|.|.| .+|...+++++.+|.++++.......    .......+...   ..++.+ +.      ..|+|+-+.
T Consensus        46 ~g~tvgIiG~G-~IG~~va~~l~~fg~~v~~~d~~~~~----~~~~~~~~~~~---~~~l~~ll~------~sD~v~l~~  111 (191)
T d1gdha1          46 DNKTLGIYGFG-SIGQALAKRAQGFDMDIDYFDTHRAS----SSDEASYQATF---HDSLDSLLS------VSQFFSLNA  111 (191)
T ss_dssp             TTCEEEEECCS-HHHHHHHHHHHTTTCEEEEECSSCCC----HHHHHHHTCEE---CSSHHHHHH------HCSEEEECC
T ss_pred             cccceEEeecc-cchHHHHHHHHhhccccccccccccc----cchhhcccccc---cCCHHHHHh------hCCeEEecC
Confidence            48999999999 99999999999999999887765442    11111222221   123333 32      236776544


Q ss_pred             C-CchH-----HHHHHhcccCcEEEEEe
Q psy2961          89 G-GNSA-----TNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        89 g-~~~~-----~~~~~~l~~~G~~v~~g  110 (202)
                      . ++.+     ...++.|+++..+|.++
T Consensus       112 plt~~T~~li~~~~l~~mk~~a~lIN~s  139 (191)
T d1gdha1         112 PSTPETRYFFNKATIKSLPQGAIVVNTA  139 (191)
T ss_dssp             CCCTTTTTCBSHHHHTTSCTTEEEEECS
T ss_pred             CCCchHhheecHHHhhCcCCccEEEecC
Confidence            3 2222     23788899999998876

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=95.92  E-value=0.016  Score=39.90  Aligned_cols=80  Identities=16%  Similarity=0.083  Sum_probs=54.2

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHH-HhcCCceEeChhHHHhHHHhhCCCCCeEEEec
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGADYVFTEEELRNISRDASIPKPKLALNC   87 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~-~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~   87 (202)
                      -.|.+|+|.|-| .+|..+++++...|++++++..+.+    +.+.+ ...|... ++.+++.       ..+.|+++=|
T Consensus        37 l~g~~v~IqG~G-nVG~~~a~~L~~~Gakvv~~d~~~~----~~~~~~~~~g~~~-~~~~~~~-------~~~cDIl~Pc  103 (230)
T d1leha1          37 LEGLAVSVQGLG-NVAKALCKKLNTEGAKLVVTDVNKA----AVSAAVAEEGADA-VAPNAIY-------GVTCDIFAPC  103 (230)
T ss_dssp             CTTCEEEEECCS-HHHHHHHHHHHHTTCEEEEECSCHH----HHHHHHHHHCCEE-CCGGGTT-------TCCCSEEEEC
T ss_pred             CCCCEEEEECCC-HHHHHHHHHHHHCCCEEEeecccHH----HHHHHHHhcCCcc-cCCcccc-------cccccEeccc
Confidence            368999999999 9999999999999999987765544    34444 3455553 3333221       1567888888


Q ss_pred             CCCchHH-HHHHhcc
Q psy2961          88 VGGNSAT-NLLRTLV  101 (202)
Q Consensus        88 ~g~~~~~-~~~~~l~  101 (202)
                      +.+.... .....++
T Consensus       104 A~~~~I~~~~~~~l~  118 (230)
T d1leha1         104 ALGAVLNDFTIPQLK  118 (230)
T ss_dssp             SCSCCBSTTHHHHCC
T ss_pred             ccccccChHHhhccC
Confidence            7655443 3555554

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=95.91  E-value=0.024  Score=33.31  Aligned_cols=73  Identities=12%  Similarity=0.066  Sum_probs=50.3

Q ss_pred             CCCCCEEEEeCCCcHHHHHH-HHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEe
Q psy2961           8 LSPGDVVIQNGANSACGQNV-IQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALN   86 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~-i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid   86 (202)
                      ++..+++.+.|.+ ++|+.+ +++++..|++|.+.......   ..+.+.+.|......... ..+      .+.|+|+-
T Consensus         5 ~~~~~~ihfiGig-G~GMs~LA~~L~~~G~~VsGSD~~~~~---~~~~L~~~Gi~v~~g~~~-~~i------~~~d~vV~   73 (96)
T d1p3da1           5 MRRVQQIHFIGIG-GAGMSGIAEILLNEGYQISGSDIADGV---VTQRLAQAGAKIYIGHAE-EHI------EGASVVVV   73 (96)
T ss_dssp             CTTCCEEEEETTT-STTHHHHHHHHHHHTCEEEEEESCCSH---HHHHHHHTTCEEEESCCG-GGG------TTCSEEEE
T ss_pred             chhCCEEEEEEEC-HHHHHHHHHHHHhCCCEEEEEeCCCCh---hhhHHHHCCCeEEECCcc-ccC------CCCCEEEE
Confidence            4567899999998 788776 89999999998887765443   467777888865443211 001      45788876


Q ss_pred             cCCCc
Q psy2961          87 CVGGN   91 (202)
Q Consensus        87 ~~g~~   91 (202)
                      +.+-+
T Consensus        74 S~AI~   78 (96)
T d1p3da1          74 SSAIK   78 (96)
T ss_dssp             CTTSC
T ss_pred             CCCcC
Confidence            66533

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=95.91  E-value=0.026  Score=32.62  Aligned_cols=68  Identities=16%  Similarity=0.140  Sum_probs=46.8

Q ss_pred             CEEEEeCCCcHHHHH-HHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecCCC
Q psy2961          12 DVVIQNGANSACGQN-VIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGG   90 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~-~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~g~   90 (202)
                      .+|-+.|.+ ++|+. ++++++..|+.|.+....+..   ..+.|+++|...... .+...+      .++|+|+-+..-
T Consensus         2 ~~ihfiGIg-G~GMs~LA~~L~~~G~~VsGSD~~~~~---~t~~L~~~Gi~i~~g-h~~~~i------~~~d~vV~SsAI   70 (89)
T d1j6ua1           2 MKIHFVGIG-GIGMSAVALHEFSNGNDVYGSNIEETE---RTAYLRKLGIPIFVP-HSADNW------YDPDLVIKTPAV   70 (89)
T ss_dssp             CEEEEETTT-SHHHHHHHHHHHHTTCEEEEECSSCCH---HHHHHHHTTCCEESS-CCTTSC------CCCSEEEECTTC
T ss_pred             cEEEEEeEC-HHHHHHHHHHHHhCCCeEEEEeCCCCh---hHHHHHHCCCeEEee-eccccc------CCCCEEEEecCc
Confidence            367788988 78986 579999999998887766543   567789999875432 111001      457888776653

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=95.87  E-value=0.0074  Score=41.91  Aligned_cols=93  Identities=14%  Similarity=0.083  Sum_probs=55.0

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCc-eEeChhHHHhHHHhhCCCCCeEEEec
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD-YVFTEEELRNISRDASIPKPKLALNC   87 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~-~v~~~~~~~~~~~~~~~~~~d~vid~   87 (202)
                      .++.+||=.|+|  .|..+..+++ .|.+++++..+++.++...+.++..+.. .++ ..|   +.+......+|+|+..
T Consensus        36 ~~~~~vLDiGCG--~G~~~~~l~~-~g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~-~~d---~~~~~~~~~fD~i~~~  108 (246)
T d1y8ca_          36 LVFDDYLDLACG--TGNLTENLCP-KFKNTWAVDLSQEMLSEAENKFRSQGLKPRLA-CQD---ISNLNINRKFDLITCC  108 (246)
T ss_dssp             CCTTEEEEETCT--TSTTHHHHGG-GSSEEEEECSCHHHHHHHHHHHHHTTCCCEEE-CCC---GGGCCCSCCEEEEEEC
T ss_pred             CCCCeEEEEeCc--CCHHHHHHHH-hCCccEeeccchhhhhhccccccccCccceee-ccc---hhhhccccccccccee
Confidence            345789999997  4677777766 5788888877776433333344444433 122 122   2222123579999854


Q ss_pred             CCC------c-----hHHHHHHhcccCcEEEE
Q psy2961          88 VGG------N-----SATNLLRTLVSKGVMVT  108 (202)
Q Consensus        88 ~g~------~-----~~~~~~~~l~~~G~~v~  108 (202)
                      .+.      .     .+..+.++|+|||.++.
T Consensus       109 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~  140 (246)
T d1y8ca_         109 LDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIF  140 (246)
T ss_dssp             TTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             eeeeeccCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence            331      1     12236678999999885

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.85  E-value=0.023  Score=39.15  Aligned_cols=98  Identities=11%  Similarity=-0.013  Sum_probs=57.9

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHC-CCcEEEEecCcccHHHHHHHHHhc----CC-ceEe-ChhHHHhHHHhhC
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSL----GA-DYVF-TEEELRNISRDAS   77 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~-g~~vi~~~~~~~~~~~~~~~~~~l----g~-~~v~-~~~~~~~~~~~~~   77 (202)
                      ...++||++||=.|+|+  |..+..+|... +..|+++--++..    .+.+++.    +. ..+. +..+......  .
T Consensus        69 ~l~ikpG~~VLDlGcGs--G~~~~~la~~~~~g~V~aVDiS~~~----i~~a~~~a~~~~ni~~i~~d~~~~~~~~~--~  140 (230)
T d1g8sa_          69 VMPIKRDSKILYLGASA--GTTPSHVADIADKGIVYAIEYAPRI----MRELLDACAERENIIPILGDANKPQEYAN--I  140 (230)
T ss_dssp             CCCCCTTCEEEEESCCS--SHHHHHHHHHTTTSEEEEEESCHHH----HHHHHHHTTTCTTEEEEECCTTCGGGGTT--T
T ss_pred             hCCCCCCCEEEEeCEEc--CHHHHHHHHhCCCCEEEEEeCcHHH----HHHHHHHHhhhcccceEEEeeccCccccc--c
Confidence            34589999999999984  78888888865 3478887766653    3444332    21 2222 1111111111  1


Q ss_pred             CCCCeEEEecCCCch-----HHHHHHhcccCcEEEEEe
Q psy2961          78 IPKPKLALNCVGGNS-----ATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        78 ~~~~d~vid~~g~~~-----~~~~~~~l~~~G~~v~~g  110 (202)
                      ...+|+++.......     ...+.+.|+|+|.++.+-
T Consensus       141 ~~~v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~  178 (230)
T d1g8sa_         141 VEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAI  178 (230)
T ss_dssp             CCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cceeEEeeccccchHHHHHHHHHHHHhcccCceEEEEe
Confidence            134667776655332     223567899999988764

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.84  E-value=0.0068  Score=43.69  Aligned_cols=35  Identities=14%  Similarity=0.252  Sum_probs=30.9

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      .+|||+|++|-+|..++..+...|++|+++.+...
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~   35 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS   35 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCC
Confidence            48999999999999999988888999999987553

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.82  E-value=0.025  Score=37.60  Aligned_cols=83  Identities=10%  Similarity=0.061  Sum_probs=56.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhCCCCCeEEEecC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNCV   88 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~~~~~d~vid~~   88 (202)
                      .+.+|.|+|.| .+|..++++++.+|.+|++.......     .      ........++.+ ++      ..|+++-+.
T Consensus        43 ~~~~vgiiG~G-~IG~~va~~l~~fg~~v~~~d~~~~~-----~------~~~~~~~~~l~ell~------~sDii~i~~  104 (188)
T d1sc6a1          43 RGKKLGIIGYG-HIGTQLGILAESLGMYVYFYDIENKL-----P------LGNATQVQHLSDLLN------MSDVVSLHV  104 (188)
T ss_dssp             TTCEEEEECCS-HHHHHHHHHHHHTTCEEEEECSSCCC-----C------CTTCEECSCHHHHHH------HCSEEEECC
T ss_pred             cceEEEEeecc-cchhhhhhhcccccceEeeccccccc-----h------hhhhhhhhhHHHHHh------hccceeecc
Confidence            57899999999 99999999999999999988754431     0      011111233444 32      247776655


Q ss_pred             C-CchH-----HHHHHhcccCcEEEEEe
Q psy2961          89 G-GNSA-----TNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        89 g-~~~~-----~~~~~~l~~~G~~v~~g  110 (202)
                      . .+.+     .+.++.|+++..+|.++
T Consensus       105 plt~~T~~li~~~~l~~mk~~a~lIN~a  132 (188)
T d1sc6a1         105 PENPSTKNMMGAKEISLMKPGSLLINAS  132 (188)
T ss_dssp             CSSTTTTTCBCHHHHHHSCTTEEEEECS
T ss_pred             cCCcchhhhccHHHHhhCCCCCEEEEcC
Confidence            4 3321     23788999999999876

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.77  E-value=0.034  Score=35.86  Aligned_cols=86  Identities=12%  Similarity=0.112  Sum_probs=54.6

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecCCCch
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGNS   92 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~g~~~   92 (202)
                      +|-|.|.| .+|...++-+...|.+|++..++++    +.+.+.+.+....-+..+.  +      ...|++|-|+..+.
T Consensus         2 kIgiIGlG-~MG~~~A~~L~~~G~~V~~~d~~~~----~~~~~~~~~~~~~~~~~e~--~------~~~d~ii~~v~~~~   68 (161)
T d1vpda2           2 KVGFIGLG-IMGKPMSKNLLKAGYSLVVSDRNPE----AIADVIAAGAETASTAKAI--A------EQCDVIITMLPNSP   68 (161)
T ss_dssp             EEEEECCS-TTHHHHHHHHHHTTCEEEEECSCHH----HHHHHHHTTCEECSSHHHH--H------HHCSEEEECCSSHH
T ss_pred             EEEEEehh-HHHHHHHHHHHHCCCeEEEEeCCcc----hhHHHHHhhhhhcccHHHH--H------hCCCeEEEEcCCHH
Confidence            57889998 8999988877789999888766654    5677777776543332222  1      23467777775543


Q ss_pred             HHH--------HHHhcccCcEEEEEec
Q psy2961          93 ATN--------LLRTLVSKGVMVTYGG  111 (202)
Q Consensus        93 ~~~--------~~~~l~~~G~~v~~g~  111 (202)
                      ...        ++..++++..++.+++
T Consensus        69 ~v~~v~~~~~~~~~~~~~g~iiid~sT   95 (161)
T d1vpda2          69 HVKEVALGENGIIEGAKPGTVLIDMSS   95 (161)
T ss_dssp             HHHHHHHSTTCHHHHCCTTCEEEECSC
T ss_pred             HHHHHHhCCcchhhccCCCCEEEECCC
Confidence            221        2344556666666553

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=95.73  E-value=0.041  Score=35.86  Aligned_cols=95  Identities=16%  Similarity=0.133  Sum_probs=60.2

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCC-------c-------eEeC--------hhHHH
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA-------D-------YVFT--------EEELR   70 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~-------~-------~v~~--------~~~~~   70 (202)
                      +|.|.|-| -+|.++.+.+...+.+++++-...+  .+...++-++..       +       .+++        ..++.
T Consensus         2 kigINGfG-RIGR~~~R~l~~~~i~iv~INd~~~--~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i~g~~I~~~~~~~p~   78 (168)
T d2g82a1           2 KVGINGFG-RIGRQVFRILHSRGVEVALINDLTD--NKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPK   78 (168)
T ss_dssp             EEEEECCS-HHHHHHHHHHHHHTCCEEEEECSSC--HHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSGG
T ss_pred             EEEEECCc-HHHHHHHHHHhcCCCEEEEECCCcc--hhhhhheeecccccCccccccccccceeEecceeEEEEecCChH
Confidence            68899999 8999999988888899888887643  234455543321       1       0111        12233


Q ss_pred             hHHHhhCCCCCeEEEecCCCchHHH-HHHhcccCcEEEEEecc
Q psy2961          71 NISRDASIPKPKLALNCVGGNSATN-LLRTLVSKGVMVTYGGM  112 (202)
Q Consensus        71 ~~~~~~~~~~~d~vid~~g~~~~~~-~~~~l~~~G~~v~~g~~  112 (202)
                      ++.+  ...++|+|+||+|.-...+ +...+..+.+-|.+..+
T Consensus        79 ~i~W--~~~gvdiViEcTG~f~~~~~~~~hl~~gakkViiSAP  119 (168)
T d2g82a1          79 EIPW--AEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAP  119 (168)
T ss_dssp             GCCT--GGGTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSC
T ss_pred             HCcc--cccCCceeEeccccccchHHhhhhhccccceeeeccc
Confidence            3111  1257999999999765544 56677777666666533

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=95.71  E-value=0.0078  Score=42.58  Aligned_cols=93  Identities=12%  Similarity=0.057  Sum_probs=61.3

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHC-CCcEEEEecCcccHHHHHHHHHhcCC--ceEeChhHHHhHHHhhCCCCCeEE
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGA--DYVFTEEELRNISRDASIPKPKLA   84 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~-g~~vi~~~~~~~~~~~~~~~~~~lg~--~~v~~~~~~~~~~~~~~~~~~d~v   84 (202)
                      ..++.+||=.|+|  .|..+..+++.. +.+++++.-+++    ..+.+++...  ..+..  |..++  ......+|+|
T Consensus        82 ~~~~~~iLDiGcG--~G~~~~~l~~~~~~~~~~giD~s~~----~~~~a~~~~~~~~~~~~--d~~~l--~~~~~sfD~v  151 (268)
T d1p91a_          82 DDKATAVLDIGCG--EGYYTHAFADALPEITTFGLDVSKV----AIKAAAKRYPQVTFCVA--SSHRL--PFSDTSMDAI  151 (268)
T ss_dssp             CTTCCEEEEETCT--TSTTHHHHHHTCTTSEEEEEESCHH----HHHHHHHHCTTSEEEEC--CTTSC--SBCTTCEEEE
T ss_pred             CCCCCEEEEeCCC--CcHHHHHHHHHCCCCEEEEecchHh----hhhhhhcccccccceee--ehhhc--cCCCCCEEEE
Confidence            3567889988887  477777888765 567778776654    4556654322  22221  11111  1123569999


Q ss_pred             EecCCCchHHHHHHhcccCcEEEEEe
Q psy2961          85 LNCVGGNSATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        85 id~~g~~~~~~~~~~l~~~G~~v~~g  110 (202)
                      +....-....++.+.|+|||.++...
T Consensus       152 ~~~~~~~~~~e~~rvLkpgG~l~~~~  177 (268)
T d1p91a_         152 IRIYAPCKAEELARVVKPGGWVITAT  177 (268)
T ss_dssp             EEESCCCCHHHHHHHEEEEEEEEEEE
T ss_pred             eecCCHHHHHHHHHHhCCCcEEEEEe
Confidence            97766666677999999999999876

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=95.68  E-value=0.021  Score=38.98  Aligned_cols=97  Identities=14%  Similarity=0.211  Sum_probs=57.9

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHH---CCCcEEEEecCcccHHHHHHHHHhcCCceEeC--hhHHHhHHHhhCCCCCe
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARH---WGLKTINIVRNRDDIDKLKSYLKSLGADYVFT--EEELRNISRDASIPKPK   82 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~---~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~--~~~~~~~~~~~~~~~~d   82 (202)
                      ++++.+||=+|+|  .|..+..+++.   .+++++++.-+++.++...+.+++.+....+.  ..+   ... .....+|
T Consensus        37 ~~~~~~vLDlGCG--tG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d---~~~-~~~~~~d  110 (225)
T d1im8a_          37 VTADSNVYDLGCS--RGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCND---IRH-VEIKNAS  110 (225)
T ss_dssp             CCTTCEEEEESCT--TCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSC---TTT-CCCCSEE
T ss_pred             cCCCCEEEEeccc--hhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccch---hhc-cccccce
Confidence            5789999999997  57777777774   57889998877764333333334444322111  111   111 1124567


Q ss_pred             EEEecCCC-----c----hHHHHHHhcccCcEEEEEe
Q psy2961          83 LALNCVGG-----N----SATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        83 ~vid~~g~-----~----~~~~~~~~l~~~G~~v~~g  110 (202)
                      +++-+..-     +    .+.++.+.|+|||.++..-
T Consensus       111 ~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~  147 (225)
T d1im8a_         111 MVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE  147 (225)
T ss_dssp             EEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eeEEeeeccccChhhHHHHHHHHHHhCCCCceeeccc
Confidence            76654332     1    1334678999999999853

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=95.65  E-value=0.013  Score=35.90  Aligned_cols=40  Identities=20%  Similarity=0.256  Sum_probs=34.6

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961           6 NSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus         6 ~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      ....++.+|+|.|+| .+|+-+++.++..|.++..+.+.+.
T Consensus        17 l~~~~~~~vvVvGgG-~ig~E~A~~l~~~g~~vt~i~~~~~   56 (121)
T d1mo9a2          17 LDYEPGSTVVVVGGS-KTAVEYGCFFNATGRRTVMLVRTEP   56 (121)
T ss_dssp             CCSCCCSEEEEECCS-HHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             HhhCCCCEEEEECCC-HHHHHHHHHHHhcchhheEeeccch
Confidence            456688999999999 9999999999999999888887653

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=95.65  E-value=0.0012  Score=43.05  Aligned_cols=88  Identities=13%  Similarity=0.040  Sum_probs=54.6

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCce--EeC--hhHHHhHHHhhCCCCCeEEEecC
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY--VFT--EEELRNISRDASIPKPKLALNCV   88 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~--v~~--~~~~~~~~~~~~~~~~d~vid~~   88 (202)
                      +|+|+|+| .+|.+....+...|.+|..+.+.++.    .+.....+.+.  ...  ..+..+  . .  ..+|++|-++
T Consensus         2 kI~IiGaG-~iG~~~a~~L~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~-~--~~~D~iii~v   71 (167)
T d1ks9a2           2 KITVLGCG-ALGQLWLTALCKQGHEVQGWLRVPQP----YCSVNLVETDGSIFNESLTANDPD--F-L--ATSDLLLVTL   71 (167)
T ss_dssp             EEEEECCS-HHHHHHHHHHHHTTCEEEEECSSCCS----EEEEEEECTTSCEEEEEEEESCHH--H-H--HTCSEEEECS
T ss_pred             EEEEECcC-HHHHHHHHHHHHCCCceEEEEcCHHH----hhhhccccCCccccccccccchhh--h-h--cccceEEEee
Confidence            68999997 99999888888899999999887753    22222222111  000  001001  1 1  4689999999


Q ss_pred             CCchHHHHH----HhcccCcEEEEEe
Q psy2961          89 GGNSATNLL----RTLVSKGVMVTYG  110 (202)
Q Consensus        89 g~~~~~~~~----~~l~~~G~~v~~g  110 (202)
                      -.......+    ..+.++..++.+.
T Consensus        72 ka~~~~~~~~~l~~~~~~~~~Iv~~q   97 (167)
T d1ks9a2          72 KAWQVSDAVKSLASTLPVTTPILLIH   97 (167)
T ss_dssp             CGGGHHHHHHHHHTTSCTTSCEEEEC
T ss_pred             cccchHHHHHhhccccCcccEEeecc
Confidence            887665543    3455666676654

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.63  E-value=0.0041  Score=45.18  Aligned_cols=94  Identities=18%  Similarity=0.207  Sum_probs=49.7

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCc-EEEEecCcccHHHHHHHHHhcCCce-Ee-ChhHHHhHHHhhCCCCCeEE
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLGADY-VF-TEEELRNISRDASIPKPKLA   84 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg~~~-v~-~~~~~~~~~~~~~~~~~d~v   84 (202)
                      +.+|++||-.|+|+  |.+++.+|+ .|++ |+++-.++ ......+.++..+... +. -..+..++  ......+|+|
T Consensus        31 ~~~~~~VLDiGcG~--G~ls~~aa~-~Ga~~V~avd~s~-~~~~a~~~~~~n~~~~~v~~~~~~~~~~--~~~~~~~D~i  104 (316)
T d1oria_          31 LFKDKVVLDVGSGT--GILCMFAAK-AGARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEV--ELPVEKVDII  104 (316)
T ss_dssp             HHTTCEEEEETCTT--SHHHHHHHH-TTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTC--CCSSSCEEEE
T ss_pred             cCCcCEEEEEecCC--cHHHHHHHH-hCCCEEEEEcCcH-HHhhhhhHHHHhCCccccceEeccHHHc--ccccceeEEE
Confidence            55899999999874  666665555 6874 66665544 3322333344444321 11 01111111  1123568998


Q ss_pred             EecC-CC----c-hHH---H-HHHhcccCcEEE
Q psy2961          85 LNCV-GG----N-SAT---N-LLRTLVSKGVMV  107 (202)
Q Consensus        85 id~~-g~----~-~~~---~-~~~~l~~~G~~v  107 (202)
                      +... +.    + ...   . .-++|+|+|+++
T Consensus       105 vs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_         105 ISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             EECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence            6532 21    1 122   2 346999999876

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.63  E-value=0.0071  Score=43.75  Aligned_cols=96  Identities=15%  Similarity=0.167  Sum_probs=50.0

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcccHHHHHHHHHhcCCceEeC--hhHHHhHHHh-hCCCC
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFT--EEELRNISRD-ASIPK   80 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~v~~--~~~~~~~~~~-~~~~~   80 (202)
                      ...+.+|++||-.|+|+  |..++.+|+ .|+ +|+++-.++. .....+..++.+....+.  ..+   +.+. .....
T Consensus        30 ~~~~~~~~~VLDiGcG~--G~lsl~aa~-~Ga~~V~aid~s~~-~~~a~~~~~~~~~~~~i~~~~~~---~~~l~~~~~~  102 (311)
T d2fyta1          30 NPHIFKDKVVLDVGCGT--GILSMFAAK-AGAKKVLGVDQSEI-LYQAMDIIRLNKLEDTITLIKGK---IEEVHLPVEK  102 (311)
T ss_dssp             CGGGTTTCEEEEETCTT--SHHHHHHHH-TTCSEEEEEESSTH-HHHHHHHHHHTTCTTTEEEEESC---TTTSCCSCSC
T ss_pred             ccccCCcCEEEEECCCC--CHHHHHHHH-cCCCEEEEEeCHHH-HHHHHHHHHHhCCCccceEEEee---HHHhcCcccc
Confidence            34566899999999974  566665555 577 5666655443 222223333443321111  111   1111 12357


Q ss_pred             CeEEEec-CC----Cch-HHH---H-HHhcccCcEEE
Q psy2961          81 PKLALNC-VG----GNS-ATN---L-LRTLVSKGVMV  107 (202)
Q Consensus        81 ~d~vid~-~g----~~~-~~~---~-~~~l~~~G~~v  107 (202)
                      +|+|+.- .+    ++. ...   . -+.|+|+|+++
T Consensus       103 ~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~ii  139 (311)
T d2fyta1         103 VDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  139 (311)
T ss_dssp             EEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             ceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEe
Confidence            8998752 22    121 112   2 35799999886

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=95.60  E-value=0.01  Score=41.37  Aligned_cols=98  Identities=14%  Similarity=0.144  Sum_probs=57.8

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCc-eEe-ChhHHHhHHHhh-CCCCCeEE
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD-YVF-TEEELRNISRDA-SIPKPKLA   84 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~-~v~-~~~~~~~~~~~~-~~~~~d~v   84 (202)
                      +++|++||=.|+|.  |..+..+++.-..+++++.-+++.++...+.+++++.. .+. -..|..  .... ....+|+|
T Consensus        22 ~~~~~~VLDlGCG~--G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~--~~~~~~~~~fD~V   97 (252)
T d1ri5a_          22 TKRGDSVLDLGCGK--GGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSY--GRHMDLGKEFDVI   97 (252)
T ss_dssp             CCTTCEEEEETCTT--TTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTT--TSCCCCSSCEEEE
T ss_pred             CCCcCEEEEecccC--cHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchh--hhcccccccceEE
Confidence            57899999999984  66677777765557888888877544344444444432 111 011110  0111 13569999


Q ss_pred             EecCCCch-----------HHHHHHhcccCcEEEEE
Q psy2961          85 LNCVGGNS-----------ATNLLRTLVSKGVMVTY  109 (202)
Q Consensus        85 id~~g~~~-----------~~~~~~~l~~~G~~v~~  109 (202)
                      +....-.+           +..+.+.|+|||.++..
T Consensus        98 ~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~  133 (252)
T d1ri5a_          98 SSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT  133 (252)
T ss_dssp             EEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             EEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence            86544221           12245789999998864

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.57  E-value=0.099  Score=33.36  Aligned_cols=94  Identities=19%  Similarity=0.272  Sum_probs=54.9

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC---cEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhCCCCCeEEEe
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGL---KTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALN   86 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~---~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~~~~~d~vid   86 (202)
                      |-+|.|.||+|-+|.-+++++..+..   ++...+++..           .|-........... ......-...|+++-
T Consensus         1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s-----------~G~~~~~~~~~~~~~~~~~~~~~~~d~~f~   69 (154)
T d2gz1a1           1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARS-----------AGKSLKFKDQDITIEETTETAFEGVDIALF   69 (154)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGG-----------TTCEEEETTEEEEEEECCTTTTTTCSEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEeccccc-----------ccccccccCCcccccccchhhhhhhhhhhh
Confidence            45899999999999999999987743   3333333221           11111000000000 000011246789998


Q ss_pred             cCCCchHHH-HHHhcccCcEEEEEeccCCC
Q psy2961          87 CVGGNSATN-LLRTLVSKGVMVTYGGMSRE  115 (202)
Q Consensus        87 ~~g~~~~~~-~~~~l~~~G~~v~~g~~~~~  115 (202)
                      +.+...... ..+....+.+++..+.....
T Consensus        70 ~~~~~~s~~~~~~~~~~~~~VIDlSsdfR~   99 (154)
T d2gz1a1          70 SAGSSTSAKYAPYAVKAGVVVVDNTSYFRQ   99 (154)
T ss_dssp             CSCHHHHHHHHHHHHHTTCEEEECSSTTTT
T ss_pred             ccCccchhhHHhhhccccceehhcChhhhc
Confidence            888776665 44577788899998765543

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.51  E-value=0.068  Score=33.42  Aligned_cols=76  Identities=16%  Similarity=0.159  Sum_probs=50.5

Q ss_pred             EEEEeCCCcHHHHHHHHHHH-HCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecCCCc
Q psy2961          13 VVIQNGANSACGQNVIQIAR-HWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGN   91 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~-~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~g~~   91 (202)
                      +|.|.|++|-+|..+++... ..+.++++..+..+.    .....                     ..++|++||.+..+
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~~----~~~~~---------------------~~~~DvvIDFS~p~   55 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDP----LSLLT---------------------DGNTEVVIDFTHPD   55 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTCC----THHHH---------------------TTTCSEEEECCCTT
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCc----hhhhc---------------------cccCCEEEEcccHH
Confidence            58899998899999888766 456788777755432    11111                     14568888888777


Q ss_pred             hHHHHHHhcccCcEEEEEeccC
Q psy2961          92 SATNLLRTLVSKGVMVTYGGMS  113 (202)
Q Consensus        92 ~~~~~~~~l~~~G~~v~~g~~~  113 (202)
                      .+...++.+...|.=+.+|...
T Consensus        56 ~~~~~~~~~~~~~~~~ViGTTG   77 (135)
T d1yl7a1          56 VVMGNLEFLIDNGIHAVVGTTG   77 (135)
T ss_dssp             THHHHHHHHHHTTCEEEECCCC
T ss_pred             HHHHHHHHHHhcCCCEEEeccc
Confidence            7777666555556555666443

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=95.50  E-value=0.02  Score=37.97  Aligned_cols=93  Identities=10%  Similarity=0.185  Sum_probs=56.0

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHC-CCcEEEEecCcccHHHHHHHH-HhcCCceEeChhHHHhHHHhhCCCCCeEEEecCCC
Q psy2961          13 VVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYL-KSLGADYVFTEEELRNISRDASIPKPKLALNCVGG   90 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~-g~~vi~~~~~~~~~~~~~~~~-~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~g~   90 (202)
                      +|.|.|++|-+|+-+++++..+ ..++..++++... ..+.... ..+............+  ..  -.+.|++|-|...
T Consensus         7 kVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~a-G~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~Dvvf~alp~   81 (183)
T d2cvoa1           7 RIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKA-GEQFGSVFPHLITQDLPNLVAVKD--AD--FSNVDAVFCCLPH   81 (183)
T ss_dssp             EEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTT-TSCHHHHCGGGTTSCCCCCBCGGG--CC--GGGCSEEEECCSS
T ss_pred             EEEEECcccHHHHHHHHHHHhCCCceEEEEeccccC-CCccccccccccccccccchhhhh--hh--hcccceeeecccc
Confidence            6899999999999999999866 4566555544331 1111111 1111111000000000  00  1468999999998


Q ss_pred             chHHHHHHhcccCcEEEEEe
Q psy2961          91 NSATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        91 ~~~~~~~~~l~~~G~~v~~g  110 (202)
                      .........+...+..+...
T Consensus        82 ~~s~~~~~~l~~~~~~v~~~  101 (183)
T d2cvoa1          82 GTTQEIIKGLPQELKIVDLS  101 (183)
T ss_dssp             SHHHHHHHTSCSSCEEEECS
T ss_pred             chHHHHHHHHHhcCcccccc
Confidence            88888778888888877654

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.50  E-value=0.043  Score=33.63  Aligned_cols=36  Identities=11%  Similarity=0.038  Sum_probs=31.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      ..++++|.|+| .+|+-+++.+..+|.+|..+.+.+.
T Consensus        22 ~p~~~vIiG~G-~ig~E~A~~l~~lG~~Vtii~~~~~   57 (122)
T d1v59a2          22 IPKRLTIIGGG-IIGLEMGSVYSRLGSKVTVVEFQPQ   57 (122)
T ss_dssp             CCSEEEEECCS-HHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCeEEEECCC-chHHHHHHHHHhhCcceeEEEeccc
Confidence            34799999999 9999999999999999988887653

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.44  E-value=0.0087  Score=40.07  Aligned_cols=100  Identities=17%  Similarity=0.096  Sum_probs=56.8

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCce--E-eChhHHHhHHHhhCCCC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY--V-FTEEELRNISRDASIPK   80 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~--v-~~~~~~~~~~~~~~~~~   80 (202)
                      +...+.++++||=.|+|  .|..++.+++ .+.+++++.-++.......+.++..+...  + +...|.   .+......
T Consensus        46 ~~l~~~~~~~VLDiGcG--~G~~~~~la~-~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~---~~~~~~~~  119 (194)
T d1dusa_          46 ENVVVDKDDDILDLGCG--YGVIGIALAD-EVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDL---YENVKDRK  119 (194)
T ss_dssp             HHCCCCTTCEEEEETCT--TSHHHHHHGG-GSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECST---TTTCTTSC
T ss_pred             HhCCcCCCCeEEEEeec--CChhHHHHHh-hccccceeeeccccchhHHHHHHHhCCccceEEEEEcch---hhhhccCC
Confidence            34567889999999987  4677777766 46788877666553222222233333321  1 111221   11223357


Q ss_pred             CeEEEecC----CCch----HHHHHHhcccCcEEEEE
Q psy2961          81 PKLALNCV----GGNS----ATNLLRTLVSKGVMVTY  109 (202)
Q Consensus        81 ~d~vid~~----g~~~----~~~~~~~l~~~G~~v~~  109 (202)
                      +|+|+-..    +.+.    +..+.+.|+|+|.++.+
T Consensus       120 fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~  156 (194)
T d1dusa_         120 YNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVV  156 (194)
T ss_dssp             EEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEE
Confidence            99988532    2211    22356889999998764

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.41  E-value=0.036  Score=40.26  Aligned_cols=41  Identities=20%  Similarity=0.276  Sum_probs=33.4

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcc
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRD   46 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~   46 (202)
                      +..+++++++|+=.|+|  .|..+.++|+..++ +++++.-+++
T Consensus       145 ~~~~l~~~~~vlD~GcG--~G~~~~~~a~~~~~~~~~Gid~s~~  186 (328)
T d1nw3a_         145 DEIKMTDDDLFVDLGSG--VGQVVLQVAAATNCKHHYGVEKADI  186 (328)
T ss_dssp             HHSCCCTTCEEEEETCT--TSHHHHHHHHHCCCSEEEEEECSHH
T ss_pred             HHcCCCCCCEEEEcCCC--CCHHHHHHHHHhCCCeEEEEeCCHH
Confidence            45678999999888886  69999999999988 4777776665

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=95.32  E-value=0.08  Score=34.44  Aligned_cols=97  Identities=16%  Similarity=0.157  Sum_probs=61.0

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhc----CC---c-------eEeC--------hhHHH
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL----GA---D-------YVFT--------EEELR   70 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~l----g~---~-------~v~~--------~~~~~   70 (202)
                      +|.|.|-| -+|.++.+.+...+.+++++-...... +...++-++    |.   +       .+++        ..++.
T Consensus         2 kIgINGfG-RIGR~~~R~~~~~~~~ivaINd~~~~~-~~~~yLlkyDS~hG~~~~~i~~~~~~l~ing~~I~~~~~~~p~   79 (169)
T d1dssg1           2 KIGINGFG-RIGRLVLRAALEMGAQVVAVNDPFIAL-EYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKKITVFNEMKPE   79 (169)
T ss_dssp             CEEEECCS-HHHHHHHHHHHHHTCCEEEEECTTSCH-HHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred             eEEEECCc-HHHHHHHHHHHhCCCcEEEECCCCcCH-HHHHHHHhcccccCCcCCeEEEeCCEEEECCEEEEEEecCChH
Confidence            58899988 899999998888888888887643322 234444333    21   1       1111        11222


Q ss_pred             hHHHhhCCCCCeEEEecCCCchHHH-HHHhcccCcEEEEEeccC
Q psy2961          71 NISRDASIPKPKLALNCVGGNSATN-LLRTLVSKGVMVTYGGMS  113 (202)
Q Consensus        71 ~~~~~~~~~~~d~vid~~g~~~~~~-~~~~l~~~G~~v~~g~~~  113 (202)
                      ++.+  ...++|+|+||+|--...+ +...+..+.+-|.+..+.
T Consensus        80 ~i~W--~~~gvD~ViEcTG~f~~~~~~~~hl~~gakkViisaP~  121 (169)
T d1dssg1          80 NIPW--SKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIISAPS  121 (169)
T ss_dssp             GCCH--HHHTCCEEEECSSSCCSHHHHGGGGTTTCSEEEESSCC
T ss_pred             HCCc--cccCCCEEEecCceEcCHHHHHHHHhcCCceEeecCCc
Confidence            2111  1147999999999766554 667888887777776443

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=95.32  E-value=0.04  Score=38.88  Aligned_cols=74  Identities=14%  Similarity=0.164  Sum_probs=44.6

Q ss_pred             EEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhCCCCCeEEEecCC
Q psy2961          14 VIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNCVG   89 (202)
Q Consensus        14 VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~~~~~d~vid~~g   89 (202)
                      |||+||+|-+|..++..+...|. +|+++-+-...  .+...+.+.......+..+... .........+++++-+.+
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~aa   77 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDG--TKFVNLVDLNIADYMDKEDFLIQIMAGEEFGDVEAIFHEGA   77 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSG--GGGHHHHTSCCSEEEEHHHHHHHHHTTCCCSSCCEEEECCS
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCc--chhhcccccchhhhccchHHHHHHhhhhcccchhhhhhhcc
Confidence            89999999999999988888897 45554211111  0233444555444555555544 433333356777776654

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.29  E-value=0.067  Score=35.12  Aligned_cols=90  Identities=4%  Similarity=-0.049  Sum_probs=54.4

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHC-CCcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCCCeEEEecCCC
Q psy2961          13 VVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNCVGG   90 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~-g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~vid~~g~   90 (202)
                      +|.|.|+| .+|...++..+.. +++++++++...+.  ..+..++++...-. .+.++.++.+   ...+|+|+-|+..
T Consensus         3 ki~iIG~G-~~g~~~~~~l~~~~~~~i~ai~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~ll~---~~~iD~v~I~tp~   76 (184)
T d1ydwa1           3 RIGVMGCA-DIARKVSRAIHLAPNATISGVASRSLEK--AKAFATANNYPESTKIHGSYESLLE---DPEIDALYVPLPT   76 (184)
T ss_dssp             EEEEESCC-TTHHHHHHHHHHCTTEEEEEEECSSHHH--HHHHHHHTTCCTTCEEESSHHHHHH---CTTCCEEEECCCG
T ss_pred             EEEEEcCC-HHHHHHHHHHHhCCCCEEEEEEeCCccc--cccchhccccccceeecCcHHHhhh---ccccceeeecccc
Confidence            57899988 7898877777766 67888888776431  23334555542111 1234444222   2578999988876


Q ss_pred             chHHH-HHHhcccCcEEEEE
Q psy2961          91 NSATN-LLRTLVSKGVMVTY  109 (202)
Q Consensus        91 ~~~~~-~~~~l~~~G~~v~~  109 (202)
                      ..-.. +..++..| .=|.+
T Consensus        77 ~~h~~~~~~~l~~g-~~v~~   95 (184)
T d1ydwa1          77 SLHVEWAIKAAEKG-KHILL   95 (184)
T ss_dssp             GGHHHHHHHHHTTT-CEEEE
T ss_pred             hhhcchhhhhhhcc-ceeec
Confidence            65444 56666655 44444

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.28  E-value=0.024  Score=34.46  Aligned_cols=36  Identities=11%  Similarity=0.108  Sum_probs=31.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      ..++|+|.|+| .+|.-+++.+..+|.+|..+.+.+.
T Consensus        21 ~p~~v~IiGgG-~ig~E~A~~l~~~G~~Vtlve~~~~   56 (117)
T d1ebda2          21 VPKSLVVIGGG-YIGIELGTAYANFGTKVTILEGAGE   56 (117)
T ss_dssp             CCSEEEEECCS-HHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             cCCeEEEECCC-ccceeeeeeecccccEEEEEEecce
Confidence            34789999999 9999999999999999988887664

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.28  E-value=0.011  Score=33.28  Aligned_cols=34  Identities=15%  Similarity=0.162  Sum_probs=30.3

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      ++|.|+|+| -+|.+.++-++.+|.++++.+..++
T Consensus         2 k~vgIlG~G-QLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNG-QLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBCS-HHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             CEEEEEcCC-HHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            478999999 9999999999999999998886654

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=95.26  E-value=0.015  Score=37.83  Aligned_cols=77  Identities=16%  Similarity=0.106  Sum_probs=55.9

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCV   88 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~   88 (202)
                      -.|++|+|.|.+.-+|.-+..++...|+.|+.+-+....   ..+.                 +      ...|+++-++
T Consensus        35 l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~~---l~~~-----------------~------~~ADivI~a~   88 (166)
T d1b0aa1          35 TFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKN---LRHH-----------------V------ENADLLIVAV   88 (166)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSC---HHHH-----------------H------HHCSEEEECS
T ss_pred             cccceEEEEeccccccHHHHHHHHHhhccccccccccch---hHHH-----------------H------hhhhHhhhhc
Confidence            469999999999999999999999999987655433221   0111                 1      3458999999


Q ss_pred             CCchHHHHHHhcccCcEEEEEecc
Q psy2961          89 GGNSATNLLRTLVSKGVMVTYGGM  112 (202)
Q Consensus        89 g~~~~~~~~~~l~~~G~~v~~g~~  112 (202)
                      |.+.+.. -+.++++..++.+|..
T Consensus        89 G~p~~i~-~~~vk~g~vvIDvGi~  111 (166)
T d1b0aa1          89 GKPGFIP-GDWIKEGAIVIDVGIN  111 (166)
T ss_dssp             CCTTCBC-TTTSCTTCEEEECCCE
T ss_pred             cCccccc-ccccCCCcEEEecCce
Confidence            9776532 4477889999998843

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.25  E-value=0.17  Score=33.10  Aligned_cols=80  Identities=15%  Similarity=0.106  Sum_probs=50.0

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCc----------eEeChhHHHhHHHhhCCCCCe
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD----------YVFTEEELRNISRDASIPKPK   82 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~----------~v~~~~~~~~~~~~~~~~~~d   82 (202)
                      +|.|+|+| ..|.+.+..+...|.+|....+..+.  +..+.+.+....          .+.-..+..+   ..  .+.|
T Consensus         2 kI~ViGaG-~~GtalA~~la~~g~~V~l~~r~~~~--~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~---~~--~~ad   73 (180)
T d1txga2           2 IVSILGAG-AMGSALSVPLVDNGNEVRIWGTEFDT--EILKSISAGREHPRLGVKLNGVEIFWPEQLEK---CL--ENAE   73 (180)
T ss_dssp             EEEEESCC-HHHHHHHHHHHHHCCEEEEECCGGGH--HHHHHHHTTCCBTTTTBCCCSEEEECGGGHHH---HH--TTCS
T ss_pred             EEEEECCC-HHHHHHHHHHHHCCCEEEEEEecccH--HHHHHHhhhhhhhhhcchhccccccccccHHH---HH--hccc
Confidence            68899999 99999998888889888877765441  123333322111          1111233322   22  4679


Q ss_pred             EEEecCCCchHHHHHHhc
Q psy2961          83 LALNCVGGNSATNLLRTL  100 (202)
Q Consensus        83 ~vid~~g~~~~~~~~~~l  100 (202)
                      +|+-++........++-+
T Consensus        74 ~Ii~avps~~~~~~~~~l   91 (180)
T d1txga2          74 VVLLGVSTDGVLPVMSRI   91 (180)
T ss_dssp             EEEECSCGGGHHHHHHHH
T ss_pred             hhhcccchhhhHHHHHhh
Confidence            999999887766655433

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.23  E-value=0.013  Score=38.86  Aligned_cols=35  Identities=9%  Similarity=0.069  Sum_probs=29.4

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCc-EEEEecCcc
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRD   46 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~-vi~~~~~~~   46 (202)
                      +++|+|.||| +.|+.++..++.+|++ |.++-+++.
T Consensus         4 ~~kVaIIGaG-paGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           4 SAKIALLGAG-PASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GCCEEEECCS-HHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCEEEEECCh-HHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            6789999999 9999999999999995 666665543

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.20  E-value=0.055  Score=35.26  Aligned_cols=76  Identities=9%  Similarity=0.084  Sum_probs=56.4

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCV   88 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~   88 (202)
                      -.|.+|+|.|.+.-+|.-++.++...|+.|+.+......   ..+.                     +  ...|+++-++
T Consensus        37 l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~~---l~~~---------------------~--~~aDivi~a~   90 (170)
T d1a4ia1          37 IAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAH---LDEE---------------------V--NKGDILVVAT   90 (170)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSS---HHHH---------------------H--TTCSEEEECC
T ss_pred             cccceEEEEecCCccchHHHHHHHhccCceEEEeccccc---HHHH---------------------H--hhccchhhcc
Confidence            478999999999999999999999999988776544332   0111                     1  4678888888


Q ss_pred             CCchHHHHHHhcccCcEEEEEec
Q psy2961          89 GGNSATNLLRTLVSKGVMVTYGG  111 (202)
Q Consensus        89 g~~~~~~~~~~l~~~G~~v~~g~  111 (202)
                      |.+.+.. -++++++..++.+|.
T Consensus        91 G~~~~i~-~~~vk~g~iviDvgi  112 (170)
T d1a4ia1          91 GQPEMVK-GEWIKPGAIVIDCGI  112 (170)
T ss_dssp             CCTTCBC-GGGSCTTCEEEECCC
T ss_pred             ccccccc-cccccCCCeEeccCc
Confidence            8776532 457888888888874

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.16  E-value=0.15  Score=32.70  Aligned_cols=46  Identities=13%  Similarity=-0.040  Sum_probs=34.1

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCce
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY   62 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~   62 (202)
                      .+|.+.|.| -+|...+.-+...|.+|.+..++++    +.+.+...+...
T Consensus         2 ~kIg~IGlG-~MG~~iA~~L~~~g~~v~~~d~~~~----~~~~~~~~~~~~   47 (162)
T d3cuma2           2 KQIAFIGLG-HMGAPMATNLLKAGYLLNVFDLVQS----AVDGLVAAGASA   47 (162)
T ss_dssp             CEEEEECCS-TTHHHHHHHHHHTTCEEEEECSSHH----HHHHHHHTTCEE
T ss_pred             CEEEEEEEH-HHHHHHHHHHHHCCCeEEEEECchh----hhhhhhhhhccc
Confidence            368889998 8999888877778999887766654    566666666543

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=95.16  E-value=0.0087  Score=43.58  Aligned_cols=70  Identities=16%  Similarity=0.067  Sum_probs=43.1

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCC-CcEEEEecCcccHHHHHHHHHh-cCCceEe-C---hhHHHhHHHhhCCCCCeEEEe
Q psy2961          13 VVIQNGANSACGQNVIQIARHWG-LKTINIVRNRDDIDKLKSYLKS-LGADYVF-T---EEELRNISRDASIPKPKLALN   86 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g-~~vi~~~~~~~~~~~~~~~~~~-lg~~~v~-~---~~~~~~~~~~~~~~~~d~vid   86 (202)
                      +|||+||+|-+|..+++.+...| .+|+++......    ...+.. .....+. |   +.++.+  ...  .++|+||.
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~----~~~~~~~~~~~~i~~Di~~~~~~~~--~~~--~~~d~Vih   73 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDA----ISRFLNHPHFHFVEGDISIHSEWIE--YHV--KKCDVVLP   73 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGG----GGGGTTCTTEEEEECCTTTCSHHHH--HHH--HHCSEEEE
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcc----hhhhccCCCeEEEECccCChHHHHH--HHH--hCCCcccc
Confidence            69999999999999998887777 578877655432    222222 1223332 2   122222  121  35899999


Q ss_pred             cCCC
Q psy2961          87 CVGG   90 (202)
Q Consensus        87 ~~g~   90 (202)
                      +++-
T Consensus        74 ~a~~   77 (342)
T d2blla1          74 LVAI   77 (342)
T ss_dssp             CBCC
T ss_pred             cccc
Confidence            8874

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.13  E-value=0.028  Score=34.31  Aligned_cols=36  Identities=11%  Similarity=0.009  Sum_probs=31.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      ..++++|.|+| .+|+-+++.++.+|.+|..+.+.+.
T Consensus        21 ~p~~i~IiG~G-~ig~E~A~~l~~~G~~Vtiv~~~~~   56 (119)
T d3lada2          21 VPGKLGVIGAG-VIGLELGSVWARLGAEVTVLEAMDK   56 (119)
T ss_dssp             CCSEEEEECCS-HHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCCeEEEECCC-hHHHHHHHHHHHcCCceEEEEeecc
Confidence            34789999999 9999999999999999988886653

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=95.13  E-value=0.0097  Score=43.89  Aligned_cols=32  Identities=13%  Similarity=0.155  Sum_probs=27.5

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecC
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRN   44 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~   44 (202)
                      +|||+||+|-+|..++..+...|.++++..++
T Consensus         2 kILItG~tGfIGs~l~~~L~~~g~~vv~~~d~   33 (361)
T d1kewa_           2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDK   33 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence            69999999999999999888889987666654

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=95.11  E-value=0.035  Score=39.32  Aligned_cols=99  Identities=12%  Similarity=0.121  Sum_probs=59.8

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHC--CCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEE
Q psy2961           7 SLSPGDVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLA   84 (202)
Q Consensus         7 ~~~~g~~VlI~g~~~~vG~~~i~la~~~--g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~v   84 (202)
                      ++.++.+||=.|+|  .|..+..+++..  +++++++.-+++..+...+.++..+.+..+...|..   +..-...+|+|
T Consensus        24 ~~~~~~~ILDiGcG--~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~---~~~~~~~fD~v   98 (281)
T d2gh1a1          24 KITKPVHIVDYGCG--YGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDAT---EIELNDKYDIA   98 (281)
T ss_dssp             CCCSCCEEEEETCT--TTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTT---TCCCSSCEEEE
T ss_pred             ccCCcCEEEEecCc--CCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccc---cccccCCceEE
Confidence            56778899988887  488888888875  467888776665332233333444443211111211   11112469999


Q ss_pred             EecCCCch-------HHHHHHhcccCcEEEEEe
Q psy2961          85 LNCVGGNS-------ATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        85 id~~g~~~-------~~~~~~~l~~~G~~v~~g  110 (202)
                      +....-.+       +..+.+.|+|||.++.+.
T Consensus        99 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~  131 (281)
T d2gh1a1          99 ICHAFLLHMTTPETMLQKMIHSVKKGGKIICFE  131 (281)
T ss_dssp             EEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEE
Confidence            86543221       234778999999998764

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=95.07  E-value=0.12  Score=34.62  Aligned_cols=98  Identities=13%  Similarity=0.029  Sum_probs=59.8

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHC-CCcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCCCeEEEecC
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNCV   88 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~-g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~vid~~   88 (202)
                      +..||=.|+|  .|..++.+|+.. ...++++--+...+....+.+++.+.+.+. -..|...+.+......+|.|+-..
T Consensus        30 ~PlvLeIGcG--~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~f  107 (204)
T d2fcaa1          30 NPIHIEVGTG--KGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF  107 (204)
T ss_dssp             CCEEEEECCT--TSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred             CceEEEEEec--CcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccc
Confidence            3456777776  688899999976 567777766665444344555667765432 122222233444456688776554


Q ss_pred             CCc--------------hHH-HHHHhcccCcEEEEEe
Q psy2961          89 GGN--------------SAT-NLLRTLVSKGVMVTYG  110 (202)
Q Consensus        89 g~~--------------~~~-~~~~~l~~~G~~v~~g  110 (202)
                      ..+              .+. .+.+.|+|||.+....
T Consensus       108 p~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T  144 (204)
T d2fcaa1         108 SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT  144 (204)
T ss_dssp             CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred             ccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            433              222 3678999999997754

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=95.06  E-value=0.017  Score=40.80  Aligned_cols=62  Identities=11%  Similarity=0.208  Sum_probs=39.6

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh-HHHhhCCCCCeEEEecCCC
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNCVGG   90 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~-~~~~~~~~~~d~vid~~g~   90 (202)
                      +|||+|++|-+|..++..+...|. ++++..+...          +-.+ +.+.+.+.. +..    .++|+||.+++.
T Consensus         2 KILItG~tGfiG~~l~~~L~~~g~-~v~~~~~~~~----------~~~D-l~~~~~~~~~i~~----~~~D~Vih~Aa~   64 (298)
T d1n2sa_           2 NILLFGKTGQVGWELQRSLAPVGN-LIALDVHSKE----------FCGD-FSNPKGVAETVRK----LRPDVIVNAAAH   64 (298)
T ss_dssp             EEEEECTTSHHHHHHHHHTTTTSE-EEEECTTCSS----------SCCC-TTCHHHHHHHHHH----HCCSEEEECCCC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCC-EEEEECCCcc----------ccCc-CCCHHHHHHHHHH----cCCCEEEEeccc
Confidence            699999999999999988777775 4544444321          1111 123344444 433    368999999873

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.05  E-value=0.03  Score=40.59  Aligned_cols=33  Identities=15%  Similarity=0.216  Sum_probs=30.1

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecC
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRN   44 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~   44 (202)
                      .+|||+|++|-+|..++..+...|.+|+++.+.
T Consensus        17 k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~   49 (341)
T d1sb8a_          17 KVWLITGVAGFIGSNLLETLLKLDQKVVGLDNF   49 (341)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence            689999999999999999999999999998753

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.04  E-value=0.024  Score=34.89  Aligned_cols=36  Identities=17%  Similarity=0.038  Sum_probs=31.4

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCc
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR   45 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~   45 (202)
                      ..+.+|+|.|+| .+|+-+++.+...|.+|..+.+.+
T Consensus        28 ~~~k~vvViGgG-~iG~E~A~~l~~~g~~Vtlie~~~   63 (123)
T d1nhpa2          28 PEVNNVVVIGSG-YIGIEAAEAFAKAGKKVTVIDILD   63 (123)
T ss_dssp             TTCCEEEEECCS-HHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             cCCCEEEEECCh-HHHHHHHHHhhccceEEEEEEecC
Confidence            457899999999 999999999999999988877655

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=95.01  E-value=0.063  Score=38.75  Aligned_cols=101  Identities=11%  Similarity=0.074  Sum_probs=56.0

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHh-HHHh-hCCCCCeEE
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRN-ISRD-ASIPKPKLA   84 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~-~~~~-~~~~~~d~v   84 (202)
                      ..+|++||=.++++  |..++++|+ -+.+|+++..++...+...+-++..|.+.+- -..|..+ +... ..+..||+|
T Consensus       143 ~~~g~rVLDl~~gt--G~~s~~~a~-g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~V  219 (318)
T d1wxxa2         143 RFRGERALDVFSYA--GGFALHLAL-GFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLV  219 (318)
T ss_dssp             GCCEEEEEEETCTT--THHHHHHHH-HEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             HhCCCeeeccCCCC--cHHHHHHHh-cCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEE
Confidence            34788998877763  555666664 3567887777765433333333445654221 1122222 2222 123579987


Q ss_pred             Ee-c--CC--Cch-----------HHHHHHhcccCcEEEEEec
Q psy2961          85 LN-C--VG--GNS-----------ATNLLRTLVSKGVMVTYGG  111 (202)
Q Consensus        85 id-~--~g--~~~-----------~~~~~~~l~~~G~~v~~g~  111 (202)
                      +- .  .+  ...           ...++++|+|||.++.+..
T Consensus       220 i~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc  262 (318)
T d1wxxa2         220 VLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC  262 (318)
T ss_dssp             EECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            63 2  21  111           1125678999999988763

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.00  E-value=0.035  Score=34.01  Aligned_cols=38  Identities=18%  Similarity=0.264  Sum_probs=33.5

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      ++++++|+|.|+| .+|.-++..++..|.+|..+.+++.
T Consensus        27 ~~~~~~vvIIGgG-~iG~E~A~~l~~~g~~Vtli~~~~~   64 (121)
T d1d7ya2          27 LRPQSRLLIVGGG-VIGLELAATARTAGVHVSLVETQPR   64 (121)
T ss_dssp             CCTTCEEEEECCS-HHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             hhcCCeEEEECcc-hhHHHHHHHhhcccceEEEEeeccc
Confidence            5678999999999 9999999999999999988887664

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.97  E-value=0.11  Score=37.38  Aligned_cols=103  Identities=9%  Similarity=0.051  Sum_probs=60.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHH-HCCCcEEEEec-CcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEec
Q psy2961          10 PGDVVIQNGANSACGQNVIQIAR-HWGLKTINIVR-NRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNC   87 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~-~~g~~vi~~~~-~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~   87 (202)
                      ...++.|+|+| ..+..-++... ....+.+.+.+ +++..+.-.+.++..+.....+..+.  +      .+.|+|+-|
T Consensus       124 ~~~~l~iiGaG-~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~a--~------~~aDiV~ta  194 (320)
T d1omoa_         124 NSSVFGFIGCG-TQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEE--A------SRCDVLVTT  194 (320)
T ss_dssp             TCCEEEEECCS-HHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHH--H------TSSSEEEEC
T ss_pred             CccEEEEecCc-ccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccchhhh--h------ccccEEEEe
Confidence            34688999998 78877665544 45565554444 44332222344455555544433211  1      468999988


Q ss_pred             CCCchHHHHHHhcccCcEEEEEeccCCCCcCCCc
Q psy2961          88 VGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPT  121 (202)
Q Consensus        88 ~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~  121 (202)
                      +.+....--.+.+++|-++..+|........++.
T Consensus       195 T~s~~P~~~~~~l~~G~hv~~iGs~~p~~~Eld~  228 (320)
T d1omoa_         195 TPSRKPVVKAEWVEEGTHINAIGADGPGKQELDV  228 (320)
T ss_dssp             CCCSSCCBCGGGCCTTCEEEECSCCSTTCCCBCH
T ss_pred             ccCcccccchhhcCCCCeEeecCCccccccccCH
Confidence            8654322234579999999999866544434443

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.96  E-value=0.22  Score=31.36  Aligned_cols=70  Identities=14%  Similarity=0.092  Sum_probs=43.3

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcccHHHHHHHHHhcC-C------ceEeChhHHHhHHHhhCCCCCeE
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLG-A------DYVFTEEELRNISRDASIPKPKL   83 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg-~------~~v~~~~~~~~~~~~~~~~~~d~   83 (202)
                      .+|.|.||+|.+|..++.++...+. ..++..+.++.    ...+.++. +      ..++...+..+   .+  .+.|+
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~----~~~a~Dl~~~~~~~~~~~~~~~~~~~~---~~--~~aDi   71 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT----PGVAADLSHIETRATVKGYLGPEQLPD---CL--KGCDV   71 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSH----HHHHHHHTTSSSSCEEEEEESGGGHHH---HH--TTCSE
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEecccc----chhhHHHhhhhhhcCCCeEEcCCChHH---Hh--CCCCE
Confidence            3688999866999999999998886 66666666542    22222221 1      11222233322   11  67899


Q ss_pred             EEecCCC
Q psy2961          84 ALNCVGG   90 (202)
Q Consensus        84 vid~~g~   90 (202)
                      |+-+.|.
T Consensus        72 vVitag~   78 (144)
T d1mlda1          72 VVIPAGV   78 (144)
T ss_dssp             EEECCSC
T ss_pred             EEECCCc
Confidence            9999884

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=94.95  E-value=0.027  Score=37.55  Aligned_cols=79  Identities=6%  Similarity=0.059  Sum_probs=50.5

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCce------EeC-----hhHHHhHHHhhCCCC
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY------VFT-----EEELRNISRDASIPK   80 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~------v~~-----~~~~~~~~~~~~~~~   80 (202)
                      .+|.|+|+| ..|.+.+..+...|.+|....++++    ..+.+.+-+.+.      .+.     ..++   .+..  .+
T Consensus         8 ~KI~ViGaG-~wGtAlA~~La~~g~~V~l~~r~~~----~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l---~~a~--~~   77 (189)
T d1n1ea2           8 NKAVVFGSG-AFGTALAMVLSKKCREVCVWHMNEE----EVRLVNEKRENVLFLKGVQLASNITFTSDV---EKAY--NG   77 (189)
T ss_dssp             EEEEEECCS-HHHHHHHHHHHTTEEEEEEECSCHH----HHHHHHHHTBCTTTSTTCBCCTTEEEESCH---HHHH--TT
T ss_pred             ceEEEECCC-HHHHHHHHHHHHcCCeEEEEEecHH----HHHHHhhcccccccccccccccccccchhh---hhcc--CC
Confidence            369999999 9999999988888888877776654    345554332211      111     1222   2322  46


Q ss_pred             CeEEEecCCCchHHHHHHhc
Q psy2961          81 PKLALNCVGGNSATNLLRTL  100 (202)
Q Consensus        81 ~d~vid~~g~~~~~~~~~~l  100 (202)
                      .|++|-++....+...++.+
T Consensus        78 ad~iiiavPs~~~~~~~~~~   97 (189)
T d1n1ea2          78 AEIILFVIPTQFLRGFFEKS   97 (189)
T ss_dssp             CSCEEECSCHHHHHHHHHHH
T ss_pred             CCEEEEcCcHHHHHHHHHHH
Confidence            79999999877665555443

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=94.88  E-value=0.13  Score=37.71  Aligned_cols=32  Identities=13%  Similarity=0.145  Sum_probs=26.1

Q ss_pred             CCEEEEeCCCcHHHHHHH-HHHHHCCCcEEEEe
Q psy2961          11 GDVVIQNGANSACGQNVI-QIARHWGLKTINIV   42 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i-~la~~~g~~vi~~~   42 (202)
                      +.+|||+||+|-+|..++ +|++..|.+|+++.
T Consensus         2 ~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D   34 (383)
T d1gy8a_           2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVD   34 (383)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEE
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEe
Confidence            458999999999998766 46667899988764

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=94.87  E-value=0.024  Score=39.38  Aligned_cols=36  Identities=19%  Similarity=0.213  Sum_probs=32.4

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCc
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR   45 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~   45 (202)
                      -.|.+|+|.|.| .+|..+++++...|++++++.+..
T Consensus        29 l~g~~v~IqGfG-nVG~~~a~~L~~~Gakvv~vsD~~   64 (242)
T d1v9la1          29 IEGKTVAIQGMG-NVGRWTAYWLEKMGAKVIAVSDIN   64 (242)
T ss_dssp             CTTCEEEEECCS-HHHHHHHHHHHTTTCEEEEEECSS
T ss_pred             CCCCEEEEECCC-HHHHHHHHHHHHcCCeEEEeeccc
Confidence            478999999998 999999999999999999988653

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=94.86  E-value=0.015  Score=41.63  Aligned_cols=33  Identities=12%  Similarity=0.152  Sum_probs=28.3

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecC
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRN   44 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~   44 (202)
                      ++|||+|++|-+|..+++.+...|..++.+...
T Consensus         3 kkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~   35 (315)
T d1e6ua_           3 QRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTR   35 (315)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTTEEEECCCT
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCc
Confidence            589999999999999999999999987765443

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.74  E-value=0.02  Score=41.52  Aligned_cols=33  Identities=21%  Similarity=0.271  Sum_probs=29.6

Q ss_pred             EE-EEeCCCcHHHHHHHHHHHHCCCcEEEEecCc
Q psy2961          13 VV-IQNGANSACGQNVIQIARHWGLKTINIVRNR   45 (202)
Q Consensus        13 ~V-lI~g~~~~vG~~~i~la~~~g~~vi~~~~~~   45 (202)
                      +| ||+||+|-+|..++..+...|++|+++.+..
T Consensus         2 KI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~   35 (347)
T d1t2aa_           2 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRS   35 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            56 9999999999999998888999999998754

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.71  E-value=0.032  Score=34.24  Aligned_cols=34  Identities=18%  Similarity=0.142  Sum_probs=29.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRN   44 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~   44 (202)
                      ..++++|.|+| .+|+-+++.++.+|.+|..+.++
T Consensus        19 ~P~~vvIIGgG-~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          19 CPGKTLVVGAS-YVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CCCSEEEECCS-HHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCCeEEEECCC-ccHHHHHHHHhhcCCeEEEEEec
Confidence            34689999999 99999999999999999888643

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=94.60  E-value=0.011  Score=37.82  Aligned_cols=90  Identities=13%  Similarity=0.172  Sum_probs=49.1

Q ss_pred             EEEEeCCCcHHHHHHHHH-HHHCC---CcEEEEecCcccHHHHHHHHHhcCCc--eEeChhHHHhHHHhhCCCCCeEEEe
Q psy2961          13 VVIQNGANSACGQNVIQI-ARHWG---LKTINIVRNRDDIDKLKSYLKSLGAD--YVFTEEELRNISRDASIPKPKLALN   86 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~l-a~~~g---~~vi~~~~~~~~~~~~~~~~~~lg~~--~v~~~~~~~~~~~~~~~~~~d~vid   86 (202)
                      +|.|.||+|-+|+-.+++ +.+..   .+++...++...    -... ..+..  .+.+..+.   ...   .++|++|-
T Consensus         3 kVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~----g~~~-~~~~~~~~~~~~~~~---~~~---~~~DivF~   71 (146)
T d1t4ba1           3 NVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLG----QAAP-SFGGTTGTLQDAFDL---EAL---KALDIIVT   71 (146)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTT----SBCC-GGGTCCCBCEETTCH---HHH---HTCSEEEE
T ss_pred             EEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccc----cccc-cccCCceeeecccch---hhh---hcCcEEEE
Confidence            689999999999999974 54432   344444444321    0010 01111  11111111   111   47899999


Q ss_pred             cCCCchHHHHHHhcccCc---EEEEEeccC
Q psy2961          87 CVGGNSATNLLRTLVSKG---VMVTYGGMS  113 (202)
Q Consensus        87 ~~g~~~~~~~~~~l~~~G---~~v~~g~~~  113 (202)
                      |++..........+...|   .++..+...
T Consensus        72 a~~~~~s~~~~~~~~~~g~~~~VID~Ss~f  101 (146)
T d1t4ba1          72 CQGGDYTNEIYPKLRESGWQGYWIDAASSL  101 (146)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCCEEEECSSTT
T ss_pred             ecCchHHHHhhHHHHhcCCCeecccCCccc
Confidence            999888777655554443   466655443

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=94.52  E-value=0.049  Score=33.94  Aligned_cols=39  Identities=13%  Similarity=0.098  Sum_probs=33.6

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961           7 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus         7 ~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      .++++.+|+|.|+| .+|.-++..++..|.+|..+.+.+.
T Consensus        31 ~~~~~k~v~VIGgG-~iG~E~A~~l~~~g~~Vtvie~~~~   69 (133)
T d1q1ra2          31 QLIADNRLVVIGGG-YIGLEVAATAIKANMHVTLLDTAAR   69 (133)
T ss_dssp             TCCTTCEEEEECCS-HHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             hhccCCEEEEECCc-hHHHHHHHHHHhhCcceeeeeeccc
Confidence            35678999999999 9999999999999999888876653

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.50  E-value=0.045  Score=34.65  Aligned_cols=92  Identities=9%  Similarity=0.064  Sum_probs=53.8

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHC---CCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecC
Q psy2961          12 DVVIQNGANSACGQNVIQIARHW---GLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCV   88 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~---g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~   88 (202)
                      -+|.|.||+|-+|+-+++++..+   ..++..++++.+.    -+.+...+.+..+  .+...    ..-.+.|++|-|.
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~----Gk~i~~~~~~~~~--~~~~~----~~~~~~d~vf~a~   72 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESA----GQRMGFAESSLRV--GDVDS----FDFSSVGLAFFAA   72 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTT----TCEEEETTEEEEC--EEGGG----CCGGGCSEEEECS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccC----Ccceeeccccchh--ccchh----hhhccceEEEecC
Confidence            46899999999999999998643   4566666554431    0111111111111  11111    1114679999999


Q ss_pred             CCchHHHHH-HhcccCcEEEEEeccC
Q psy2961          89 GGNSATNLL-RTLVSKGVMVTYGGMS  113 (202)
Q Consensus        89 g~~~~~~~~-~~l~~~G~~v~~g~~~  113 (202)
                      +........ .....+.+++..+...
T Consensus        73 p~~~s~~~~~~~~~~g~~VID~Ss~f   98 (144)
T d2hjsa1          73 AAEVSRAHAERARAAGCSVIDLSGAL   98 (144)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEETTCTT
T ss_pred             CcchhhhhccccccCCceEEeechhh
Confidence            887776644 4556677777766444

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.45  E-value=0.036  Score=34.04  Aligned_cols=37  Identities=11%  Similarity=0.048  Sum_probs=32.3

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      +..++++|.|+| .+|+-+++.++.+|.+|..+.+++.
T Consensus        23 ~~p~~~viiG~G-~iglE~A~~~~~~G~~Vtvi~~~~~   59 (123)
T d1dxla2          23 EIPKKLVVIGAG-YIGLEMGSVWGRIGSEVTVVEFASE   59 (123)
T ss_dssp             SCCSEEEESCCS-HHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             ccCCeEEEEccc-hHHHHHHHHHHhcCCeEEEEEEccc
Confidence            345799999999 9999999999999999998877664

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=94.41  E-value=0.041  Score=33.91  Aligned_cols=37  Identities=8%  Similarity=0.006  Sum_probs=32.3

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      +..++++|.|+| .+|+-+++..+.+|.+|..+...+.
T Consensus        24 ~~p~~vvIiGgG-~IG~E~A~~~~~~G~~Vtive~~~~   60 (125)
T d1ojta2          24 EVPGKLLIIGGG-IIGLEMGTVYSTLGSRLDVVEMMDG   60 (125)
T ss_dssp             CCCSEEEEESCS-HHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             ccCCeEEEECCC-HHHHHHHHHhhcCCCEEEEEEeecc
Confidence            346899999999 9999999999999999998877653

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=94.40  E-value=0.028  Score=39.55  Aligned_cols=33  Identities=18%  Similarity=0.140  Sum_probs=28.6

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecC
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRN   44 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~   44 (202)
                      |++|+|.|+| ..|+.++..++..|.+|.++-.+
T Consensus         1 ~KkV~IIGaG-~aGL~aA~~La~~G~~V~vlE~~   33 (373)
T d1seza1           1 AKRVAVIGAG-VSGLAAAYKLKIHGLNVTVFEAE   33 (373)
T ss_dssp             CCEEEEECCS-HHHHHHHHHHHTTSCEEEEECSS
T ss_pred             CCEEEEECcC-HHHHHHHHHHHhCCCCEEEEeCC
Confidence            5789999999 99999999999999998877544

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.38  E-value=0.03  Score=38.12  Aligned_cols=97  Identities=10%  Similarity=-0.048  Sum_probs=57.9

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHh----cCCceEe-ChhHHHhHHHh-hCCCC
Q psy2961           7 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS----LGADYVF-TEEELRNISRD-ASIPK   80 (202)
Q Consensus         7 ~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~----lg~~~v~-~~~~~~~~~~~-~~~~~   80 (202)
                      ...++.+||=.|+|  .|..+..+++..+.+|+++.-+++    ..+.+++    .+...+- -..+   +.+. .....
T Consensus        57 ~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~~vD~s~~----~l~~ak~~~~~~~~~~~~f~~~d---~~~~~~~~~~  127 (222)
T d2ex4a1          57 NKTGTSCALDCGAG--IGRITKRLLLPLFREVDMVDITED----FLVQAKTYLGEEGKRVRNYFCCG---LQDFTPEPDS  127 (222)
T ss_dssp             -CCCCSEEEEETCT--TTHHHHHTTTTTCSEEEEEESCHH----HHHHHHHHTGGGGGGEEEEEECC---GGGCCCCSSC
T ss_pred             CCCCCCEEEEeccC--CCHhhHHHHHhcCCEEEEeecCHH----Hhhcccccccccccccccccccc---cccccccccc
Confidence            45677899999997  577888887777777888776665    3444543    2322210 0112   2221 12357


Q ss_pred             CeEEEecCCC-----ch----HHHHHHhcccCcEEEEEecc
Q psy2961          81 PKLALNCVGG-----NS----ATNLLRTLVSKGVMVTYGGM  112 (202)
Q Consensus        81 ~d~vid~~g~-----~~----~~~~~~~l~~~G~~v~~g~~  112 (202)
                      +|+|+....-     +.    +..+.+.|+|+|.++.....
T Consensus       128 fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~  168 (222)
T d2ex4a1         128 YDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNM  168 (222)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             ccccccccccccchhhhhhhHHHHHHHhcCCcceEEEEEcc
Confidence            8999874432     21    22356799999999987533

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.34  E-value=0.055  Score=36.00  Aligned_cols=36  Identities=19%  Similarity=0.243  Sum_probs=31.5

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccH
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDI   48 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~   48 (202)
                      ++|.|.|+| .+|...++++...|..|+....+++..
T Consensus         5 kkvaViGaG-~mG~~iA~~~a~~G~~V~l~D~~~~~l   40 (192)
T d1f0ya2           5 KHVTVIGGG-LMGAGIAQVAAATGHTVVLVDQTEDIL   40 (192)
T ss_dssp             CEEEEECCS-HHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred             EEEEEECcC-HHHHHHHHHHHhCCCcEEEEECChHHH
Confidence            589999998 999999999999999999888777643

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=94.33  E-value=0.035  Score=35.32  Aligned_cols=92  Identities=13%  Similarity=0.130  Sum_probs=50.8

Q ss_pred             EEEEeCCCcHHHHHHHHHHH-H---CCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecC
Q psy2961          13 VVIQNGANSACGQNVIQIAR-H---WGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCV   88 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~-~---~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~   88 (202)
                      +|.|.||+|-+|+-+++++. +   -..++..++++...     .....++.+......... ....   .+.|++|-|+
T Consensus         2 KVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~-----gk~~~~~~~~~~~~~~~~-~~~~---~~~DvvF~al   72 (147)
T d1mb4a1           2 RVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIG-----VPAPNFGKDAGMLHDAFD-IESL---KQLDAVITCQ   72 (147)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCS-----SBCCCSSSCCCBCEETTC-HHHH---TTCSEEEECS
T ss_pred             EEEEECCccHHHHHHHHHHHhcCCCCceEEEEecccccc-----ccccccCCcceeeecccc-hhhh---ccccEEEEec
Confidence            68999999999999998653 2   23455555544331     111112211111100000 0011   5789999999


Q ss_pred             CCchHHHHHHhcccCc---EEEEEeccC
Q psy2961          89 GGNSATNLLRTLVSKG---VMVTYGGMS  113 (202)
Q Consensus        89 g~~~~~~~~~~l~~~G---~~v~~g~~~  113 (202)
                      +..........+...|   .++..+...
T Consensus        73 p~~~s~~~~~~l~~~g~~~~VIDlSsdf  100 (147)
T d1mb4a1          73 GGSYTEKVYPALRQAGWKGYWIDAASTL  100 (147)
T ss_dssp             CHHHHHHHHHHHHHTTCCSEEEESSSTT
T ss_pred             CchHHHHHhHHHHHcCCceEEEeCCccc
Confidence            9888877665544443   366665433

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=94.30  E-value=0.034  Score=38.48  Aligned_cols=34  Identities=18%  Similarity=0.183  Sum_probs=29.5

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCc
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR   45 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~   45 (202)
                      .++|+|.||| +.|++++..++..|.+|+++-+++
T Consensus         4 ~~kV~IiGaG-~aGl~~A~~L~~~G~~v~v~Er~~   37 (265)
T d2voua1           4 TDRIAVVGGS-ISGLTAALMLRDAGVDVDVYERSP   37 (265)
T ss_dssp             CSEEEEECCS-HHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCcEEEECcC-HHHHHHHHHHHHCCCCEEEEeCCC
Confidence            4789999999 999999999999999988886544

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=94.30  E-value=0.027  Score=39.43  Aligned_cols=35  Identities=14%  Similarity=0.153  Sum_probs=31.8

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRN   44 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~   44 (202)
                      -.|.+|+|.|-| .+|..+++.+...|+++++++++
T Consensus        34 l~g~~v~IQGfG-nVG~~~a~~L~e~GakvvavsD~   68 (255)
T d1bgva1          34 LVGKTVALAGFG-NVAWGAAKKLAELGAKAVTLSGP   68 (255)
T ss_dssp             STTCEEEECCSS-HHHHHHHHHHHHHTCEEEEEEET
T ss_pred             CCCCEEEEECCC-HHHHHHHHHHHHcCCeEEEEecC
Confidence            468899999988 99999999999999999998864

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=94.30  E-value=0.31  Score=31.10  Aligned_cols=85  Identities=11%  Similarity=-0.037  Sum_probs=52.1

Q ss_pred             EEEEeCCCcHHHHH-HHHHHH-HCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecCCC
Q psy2961          13 VVIQNGANSACGQN-VIQIAR-HWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGG   90 (202)
Q Consensus        13 ~VlI~g~~~~vG~~-~i~la~-~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~g~   90 (202)
                      +|.|.|+| .+|.- .+...+ .-+.+++++++.....  ..+..+.++....-+.++   +   .  ..+|+|+-|+..
T Consensus         3 ri~iIG~G-~~g~~~~~~~l~~~~~~~i~~v~d~~~~~--~~~~~~~~~~~~~~~~~~---l---~--~~~D~V~I~tp~   71 (164)
T d1tlta1           3 RIGVVGLG-GIAQKAWLPVLAAASDWTLQGAWSPTRAK--ALPICESWRIPYADSLSS---L---A--ASCDAVFVHSST   71 (164)
T ss_dssp             EEEEECCS-THHHHTHHHHHHSCSSEEEEEEECSSCTT--HHHHHHHHTCCBCSSHHH---H---H--TTCSEEEECSCT
T ss_pred             EEEEEcCC-HHHHHHHHHHHHhCCCcEEEEEEechhHh--hhhhhhcccccccccchh---h---h--hhcccccccccc
Confidence            68899987 77753 555555 4478899888776532  345556777664222222   2   1  358999888876


Q ss_pred             chHHH-HHHhcccCcEEEEE
Q psy2961          91 NSATN-LLRTLVSKGVMVTY  109 (202)
Q Consensus        91 ~~~~~-~~~~l~~~G~~v~~  109 (202)
                      ..-.. +..++..| .=|.+
T Consensus        72 ~~h~~~~~~al~~g-k~V~~   90 (164)
T d1tlta1          72 ASHFDVVSTLLNAG-VHVCV   90 (164)
T ss_dssp             THHHHHHHHHHHTT-CEEEE
T ss_pred             hhcccccccccccc-ceeec
Confidence            65444 55666665 43444

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.26  E-value=0.093  Score=37.31  Aligned_cols=95  Identities=15%  Similarity=0.131  Sum_probs=54.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcC---------CceEeChhHHHh-HHHhhCCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG---------ADYVFTEEELRN-ISRDASIP   79 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg---------~~~v~~~~~~~~-~~~~~~~~   79 (202)
                      .-++|||.|+|+  |..+-.++++.+.+.+.++.-+..   -.+.++++-         ...-+...|-.. +.+.. ..
T Consensus        80 ~pk~VLiiGgG~--G~~~r~~l~~~~~~~i~~VEiD~~---Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~-~~  153 (290)
T d1xj5a_          80 NPKKVLVIGGGD--GGVLREVARHASIEQIDMCEIDKM---VVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAA-EG  153 (290)
T ss_dssp             CCCEEEEETCSS--SHHHHHHTTCTTCCEEEEEESCHH---HHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSC-TT
T ss_pred             CCcceEEecCCc--hHHHHHHHhcccceeeEEecCCHH---HHHHHHHhchhhhccccCCCcEEEEccHHHHHhhcc-cc
Confidence            347899999885  566667788878766666655543   244554431         111111123333 44332 24


Q ss_pred             CCeEEE-ecCCC---------c-hHHHHHHhcccCcEEEEEe
Q psy2961          80 KPKLAL-NCVGG---------N-SATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        80 ~~d~vi-d~~g~---------~-~~~~~~~~l~~~G~~v~~g  110 (202)
                      .+|+|| |+...         . .+..+.++|+++|.++.-.
T Consensus       154 ~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~  195 (290)
T d1xj5a_         154 SYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA  195 (290)
T ss_dssp             CEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence            799765 54431         1 1233678999999999854

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=94.23  E-value=0.047  Score=33.10  Aligned_cols=34  Identities=21%  Similarity=0.069  Sum_probs=30.0

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCc
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR   45 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~   45 (202)
                      .++|+|.|+| .+|+-+++.++.+|.+|..+.+.+
T Consensus        21 p~~vvIiGgG-~ig~E~A~~l~~~G~~Vtlve~~~   54 (116)
T d1gesa2          21 PERVAVVGAG-YIGVELGGVINGLGAKTHLFEMFD   54 (116)
T ss_dssp             CSEEEEECCS-HHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCEEEEECCC-hhhHHHHHHhhccccEEEEEeecc
Confidence            4689999999 999999999999999988877665

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=94.22  E-value=0.0062  Score=39.73  Aligned_cols=92  Identities=20%  Similarity=0.176  Sum_probs=58.1

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHC-CCcEEEEecCcccHHHHHHHH-HhcC----Cce--EeChhHHHhHHHhhCCCCCeEE
Q psy2961          13 VVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYL-KSLG----ADY--VFTEEELRNISRDASIPKPKLA   84 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~-g~~vi~~~~~~~~~~~~~~~~-~~lg----~~~--v~~~~~~~~~~~~~~~~~~d~v   84 (202)
                      +|.|+|++|-+|.++++++... ++++++...++..     ..+ +.+|    ...  +....++   ....  ..+|++
T Consensus         6 kI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~-----~~~g~d~~~~~~~~~~~~~~~~~~---~~~~--~~~DVi   75 (162)
T d1diha1           6 RVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGS-----SLLGSDAGELAGAGKTGVTVQSSL---DAVK--DDFDVF   75 (162)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTC-----TTCSCCTTCSSSSSCCSCCEESCS---TTTT--TSCSEE
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccc-----hhccchhhhhhccccCCceeeccH---HHHh--cccceE
Confidence            6899999889999999988765 6777777655431     111 1111    100  0001111   1111  468999


Q ss_pred             EecCCCchHHHHHHhcccCcEEEEEeccCC
Q psy2961          85 LNCVGGNSATNLLRTLVSKGVMVTYGGMSR  114 (202)
Q Consensus        85 id~~g~~~~~~~~~~l~~~G~~v~~g~~~~  114 (202)
                      ||.+..+.+...++.....|.=+++|..+-
T Consensus        76 IDFs~p~~~~~~~~~a~~~~~~~ViGTTG~  105 (162)
T d1diha1          76 IDFTRPEGTLNHLAFCRQHGKGMVIGTTGF  105 (162)
T ss_dssp             EECSCHHHHHHHHHHHHHTTCEEEECCCCC
T ss_pred             EEeccHHHHHHHHHHHHhccceeEEecCCC
Confidence            999988888888887777777777775543

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=94.20  E-value=0.16  Score=32.78  Aligned_cols=96  Identities=17%  Similarity=0.185  Sum_probs=59.2

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHC-CCcEEEEecCcccHHHHHHHHHhc----C---Cc-------eEeCh--------hHH
Q psy2961          13 VVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSL----G---AD-------YVFTE--------EEL   69 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~-g~~vi~~~~~~~~~~~~~~~~~~l----g---~~-------~v~~~--------~~~   69 (202)
                      +|.|.|-| -+|.++.+.+... ..+++++-+..+  .+.+.++-++    |   .+       .+++.        .++
T Consensus         3 kigINGFG-RIGR~v~R~~~~~~~i~ivaINd~~~--~~~~ayLl~yDSvhG~~~~~v~~~~~~l~ing~~I~i~~~~~p   79 (166)
T d1gado1           3 KVGINGFG-RIGRIVFRAAQKRSDIEIVAINDLLD--ADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDP   79 (166)
T ss_dssp             EEEEECCS-HHHHHHHHHHHTCSSEEEEEEECSSC--HHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred             EEEEECCc-HHHHHHHHHHhhCCCeEEEEEeCCCC--HHHHhhhheecCCCCCcCCeEEEeCCEEEECCEEEEEEeCCCh
Confidence            58899988 8999999887765 467777776543  2344455333    2   11       11111        223


Q ss_pred             HhHHHhhCCCCCeEEEecCCCchHHH-HHHhcccCcEEEEEeccC
Q psy2961          70 RNISRDASIPKPKLALNCVGGNSATN-LLRTLVSKGVMVTYGGMS  113 (202)
Q Consensus        70 ~~~~~~~~~~~~d~vid~~g~~~~~~-~~~~l~~~G~~v~~g~~~  113 (202)
                      .++.+.  ..++|+|+||+|--.... +...+..|.+-|.+..+.
T Consensus        80 ~~i~W~--~~gvDiViEcTG~f~t~~~~~~hl~~gakkViiSaP~  122 (166)
T d1gado1          80 ANLKWD--EVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPS  122 (166)
T ss_dssp             GGGCHH--HHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCC
T ss_pred             HHCCcc--ccCCCEEEEccccccCHHHHHHHhcCCCceEEeeccc
Confidence            332211  147999999999766554 667788787667766443

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.20  E-value=0.042  Score=39.08  Aligned_cols=35  Identities=11%  Similarity=0.247  Sum_probs=31.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCc
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR   45 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~   45 (202)
                      .|.+|+|.|-| .+|..+++.+...|++++++.++.
T Consensus        35 ~gktvaIqGfG-nVG~~~A~~L~e~Gakvv~vsD~~   69 (293)
T d1hwxa1          35 GDKTFAVQGFG-NVGLHSMRYLHRFGAKCVAVGESD   69 (293)
T ss_dssp             TTCEEEEECCS-HHHHHHHHHHHHTTCEEEEEEETT
T ss_pred             CCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEEccc
Confidence            67899999998 999999999999999999988643

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.14  E-value=0.047  Score=37.36  Aligned_cols=37  Identities=16%  Similarity=0.163  Sum_probs=31.9

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      +.+++|+|.|+| +.|+.++..++..|.+|..+...++
T Consensus        47 ~~~k~VvIIGaG-pAGl~aA~~l~~~G~~v~l~E~~~~   83 (233)
T d1djqa3          47 KNKDSVLIVGAG-PSGSEAARVLMESGYTVHLTDTAEK   83 (233)
T ss_dssp             SSCCEEEEECCS-HHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cCCceEEEEccc-HHHHHHHHHHHHhccceeeEeeccc
Confidence            467899999999 9999999999999999888875553

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=94.14  E-value=0.13  Score=33.56  Aligned_cols=97  Identities=15%  Similarity=0.165  Sum_probs=58.1

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHC----CCcEEEEecCcccHHHHHHHHHhcCC-------c-------eEeC--------h
Q psy2961          13 VVIQNGANSACGQNVIQIARHW----GLKTINIVRNRDDIDKLKSYLKSLGA-------D-------YVFT--------E   66 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~----g~~vi~~~~~~~~~~~~~~~~~~lg~-------~-------~v~~--------~   66 (202)
                      +|.|.|-| -+|.++.+.+...    ..+++++-...+  .+.+.++-++..       .       .+++        .
T Consensus         3 kigINGfG-RIGR~v~R~~~~~~~~~~~~vvaINd~~~--~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~   79 (173)
T d1obfo1           3 RVAINGYG-RIGRNILRAHYEGGKSHDIEIVAINDLGD--PKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDKIRVDAN   79 (173)
T ss_dssp             EEEEECCS-HHHHHHHHHHHHTTSCSSEEEEEEECSSC--HHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECC
T ss_pred             EEEEECCc-HHHHHHHHHHHhCCCCCCeEEEEEcCCCC--hHHHHHhhcccccCCCcCceEEeccceEEECCEEEEEEec
Confidence            58899988 8999999876543    345666665443  233445533321       1       1111        1


Q ss_pred             hHHHhHHHhhCCCCCeEEEecCCCchHH-HHHHhcccCcEEEEEeccCC
Q psy2961          67 EELRNISRDASIPKPKLALNCVGGNSAT-NLLRTLVSKGVMVTYGGMSR  114 (202)
Q Consensus        67 ~~~~~~~~~~~~~~~d~vid~~g~~~~~-~~~~~l~~~G~~v~~g~~~~  114 (202)
                      .++.++.+  ...++|+|+||+|--... .+...|..|.+-|.+..+..
T Consensus        80 ~~p~~i~W--~~~gvDiViEcTG~f~~~~~a~~hl~~GakkViiSAP~~  126 (173)
T d1obfo1          80 RNPAQLPW--GALKVDVVLECTGFFTTKEKAGAHIKGGAKKVIISAPGG  126 (173)
T ss_dssp             SCGGGSCT--TTTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEESSCCC
T ss_pred             CCHHHCcc--cccccceEEEecccccCHHHHHHHhccCCcceEEecCCC
Confidence            12222111  236899999999975544 46778888887777765443

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=94.11  E-value=0.33  Score=31.53  Aligned_cols=134  Identities=10%  Similarity=0.108  Sum_probs=74.1

Q ss_pred             EEEEeCCCcHHHHH-HHHHHHHCC--CcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecCC
Q psy2961          13 VVIQNGANSACGQN-VIQIARHWG--LKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVG   89 (202)
Q Consensus        13 ~VlI~g~~~~vG~~-~i~la~~~g--~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~g   89 (202)
                      +|.|.|+| .+|.- .+...+..+  .++++++++...  ......+.++...++  .++.++.   ....+|+|+-|+.
T Consensus         5 rigiIG~G-~~g~~~h~~~l~~~~~~~~i~~v~d~~~~--~~~~~~~~~~~~~~~--~~~~ell---~~~~id~v~I~tp   76 (181)
T d1zh8a1           5 RLGIVGCG-IAARELHLPALKNLSHLFEITAVTSRTRS--HAEEFAKMVGNPAVF--DSYEELL---ESGLVDAVDLTLP   76 (181)
T ss_dssp             EEEEECCS-HHHHHTHHHHHHTTTTTEEEEEEECSSHH--HHHHHHHHHSSCEEE--SCHHHHH---HSSCCSEEEECCC
T ss_pred             EEEEEcCC-HHHHHHHHHHHHhCCCCeEEEEEEeccHh--hhhhhhcccccccee--eeeeccc---cccccceeecccc
Confidence            68899988 78864 466666543  477888877653  123344567776654  3333321   2257899998887


Q ss_pred             CchHHH-HHHhcccCcEEEEEeccCCCCcCCCccc------ccc-cCeeE-EEEechhHhhhcccHHHHHHHHHHHHHHH
Q psy2961          90 GNSATN-LLRTLVSKGVMVTYGGMSREPVQIPTSA------FIF-KDITL-RGHWMTRWQKENKESAERKSMMNELTEMM  160 (202)
Q Consensus        90 ~~~~~~-~~~~l~~~G~~v~~g~~~~~~~~~~~~~------~~~-~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (202)
                      ...-.. +..++..| .-|.+- .   |...+..+      +.. ++..+ .++.. .+       ..+...+.++.+++
T Consensus        77 ~~~h~~~~~~al~~g-k~V~~E-K---Pl~~~~~e~~~l~~~~~~~~~~~~v~~~~-R~-------~~~~~~~~~~~~~i  143 (181)
T d1zh8a1          77 VELNLPFIEKALRKG-VHVICE-K---PISTDVETGKKVVELSEKSEKTVYIAENF-RE-------NSYQKEFEDFYQVV  143 (181)
T ss_dssp             GGGHHHHHHHHHHTT-CEEEEE-S---SSSSSHHHHHHHHHHHHHCSSCEEEECGG-GC-------CHHHHHHHHHHHHH
T ss_pred             ccccccccccccccc-hhhhcC-C---CCcCCHHHHHHHHHHHHHhCCeEEEEeec-cc-------cccCHHHHHHHHHH
Confidence            665444 45556554 445543 1   22222211      222 22322 22221 11       12345588889999


Q ss_pred             HcCCCCC
Q psy2961         161 RTGKLAA  167 (202)
Q Consensus       161 ~~g~~~~  167 (202)
                      .+|++-.
T Consensus       144 ~~G~ig~  150 (181)
T d1zh8a1         144 AEGKPND  150 (181)
T ss_dssp             HSCCCCS
T ss_pred             HCCCCcc
Confidence            9998754

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=94.06  E-value=0.084  Score=34.58  Aligned_cols=93  Identities=13%  Similarity=0.153  Sum_probs=53.6

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHC-CCcEEEEecCcccHHHHHHHH-HhcCCceEeChhHHHhHHHhhCCCCCeEEEecCCC
Q psy2961          13 VVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYL-KSLGADYVFTEEELRNISRDASIPKPKLALNCVGG   90 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~-g~~vi~~~~~~~~~~~~~~~~-~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~g~   90 (202)
                      +|.|.|++|-+|.-+++++..+ ..++..++++... .++.... ..+-....+...+..++.     .+.|++|-+.+.
T Consensus         3 kVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~a-G~~i~~~~p~~~~~~~~~~~~~~~~~-----~~~dvvf~a~p~   76 (176)
T d1vkna1           3 RAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYA-GKKLEEIFPSTLENSILSEFDPEKVS-----KNCDVLFTALPA   76 (176)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTT-TSBHHHHCGGGCCCCBCBCCCHHHHH-----HHCSEEEECCST
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccC-CCcccccCchhhccccccccCHhHhc-----cccceEEEcccc
Confidence            6899999999999999888755 4566666554431 1122222 222222222222222211     257999999988


Q ss_pred             chHHHHHHhcccCcEEEEEecc
Q psy2961          91 NSATNLLRTLVSKGVMVTYGGM  112 (202)
Q Consensus        91 ~~~~~~~~~l~~~G~~v~~g~~  112 (202)
                      .......... .+-+++..+..
T Consensus        77 ~~s~~~~~~~-~~~~VIDlSad   97 (176)
T d1vkna1          77 GASYDLVREL-KGVKIIDLGAD   97 (176)
T ss_dssp             THHHHHHTTC-CSCEEEESSST
T ss_pred             HHHHHHHHhh-ccceEEecCcc
Confidence            7766655443 45677666543

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.99  E-value=0.065  Score=32.89  Aligned_cols=35  Identities=20%  Similarity=0.178  Sum_probs=31.0

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      .++|+|.|+| .+|+-++..++.+|.+|..+.+++.
T Consensus        22 pk~vvIvGgG-~iG~E~A~~l~~~G~~Vtlv~~~~~   56 (125)
T d3grsa2          22 PGRSVIVGAG-YIAVEMAGILSALGSKTSLMIRHDK   56 (125)
T ss_dssp             CSEEEEECCS-HHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCEEEEEcCC-ccHHHHHHHHhcCCcEEEEEeeccc
Confidence            3689999999 9999999999999999988887653

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=93.87  E-value=0.24  Score=31.21  Aligned_cols=33  Identities=18%  Similarity=0.200  Sum_probs=27.4

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      +|.|.|.| -+|...+.-+...|.++++..+.++
T Consensus         2 kIgiIG~G-~mG~~ia~~l~~~g~~v~~~~~~~~   34 (152)
T d1i36a2           2 RVGFIGFG-EVAQTLASRLRSRGVEVVTSLEGRS   34 (152)
T ss_dssp             EEEEESCS-HHHHHHHHHHHHTTCEEEECCTTCC
T ss_pred             EEEEEcHH-HHHHHHHHHHHHCCCeEEEEcCchh
Confidence            57888998 9999999988889998877766655

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.82  E-value=0.095  Score=34.32  Aligned_cols=95  Identities=15%  Similarity=0.171  Sum_probs=53.8

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHC-CCcEEEEecCcc--cHHHHHHHH-Hhc-C--CceEeChhHHHhHHHhhCCCCCeEEE
Q psy2961          13 VVIQNGANSACGQNVIQIARHW-GLKTINIVRNRD--DIDKLKSYL-KSL-G--ADYVFTEEELRNISRDASIPKPKLAL   85 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~-g~~vi~~~~~~~--~~~~~~~~~-~~l-g--~~~v~~~~~~~~~~~~~~~~~~d~vi   85 (202)
                      +|.|.|++|-+|+-+++++..+ ..++..+.....  ...++.... ..+ +  ...+....+.   .  ....++|++|
T Consensus         3 kVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~dvvf   77 (179)
T d2g17a1           3 NTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDV---R--DFSADVDVVF   77 (179)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCG---G--GTCTTCCEEE
T ss_pred             EEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhh---h--hhhcccceee
Confidence            6899999999999999999977 666655543221  000011111 111 1  1111110110   0  1125789999


Q ss_pred             ecCCCchHHHHH-HhcccCcEEEEEecc
Q psy2961          86 NCVGGNSATNLL-RTLVSKGVMVTYGGM  112 (202)
Q Consensus        86 d~~g~~~~~~~~-~~l~~~G~~v~~g~~  112 (202)
                      -|.+........ ..+..+-+++..+..
T Consensus        78 ~alp~~~s~~~~~~~~~~~~~vIDlSad  105 (179)
T d2g17a1          78 LATAHEVSHDLAPQFLQAGCVVFDLSGA  105 (179)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCEEEECSST
T ss_pred             ccccchhHHHHhhhhhhcCceeeccccc
Confidence            999887776644 455566677776543

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.80  E-value=0.061  Score=38.95  Aligned_cols=94  Identities=18%  Similarity=0.217  Sum_probs=47.9

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCc-EEEEecCcccHHHHHHHHHhcCCce-E-eChhHHHhHHHhhCCCCCeEE
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLGADY-V-FTEEELRNISRDASIPKPKLA   84 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg~~~-v-~~~~~~~~~~~~~~~~~~d~v   84 (202)
                      +.+|++||-.|+|+  |.+++.+| ..|++ |+++..+ +......+..++.+... + +...+..++  ......+|+|
T Consensus        36 ~~~~~~VLDlGcGt--G~ls~~aa-~~Ga~~V~avd~s-~~~~~a~~~~~~~~~~~~i~~i~~~~~~l--~~~~~~~D~i  109 (328)
T d1g6q1_          36 LFKDKIVLDVGCGT--GILSMFAA-KHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDV--HLPFPKVDII  109 (328)
T ss_dssp             HHTTCEEEEETCTT--SHHHHHHH-HTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTS--CCSSSCEEEE
T ss_pred             cCCcCEEEEeCCCC--CHHHHHHH-HhCCCEEEEEeCC-HHHHHHHHHHHHhCccccceEEEeehhhc--cCcccceeEE
Confidence            45799999999974  56665444 46774 5555544 32222233334444321 1 111111111  0123568988


Q ss_pred             EecCC-----C-chH---HHH-HHhcccCcEEE
Q psy2961          85 LNCVG-----G-NSA---TNL-LRTLVSKGVMV  107 (202)
Q Consensus        85 id~~g-----~-~~~---~~~-~~~l~~~G~~v  107 (202)
                      +...-     + ...   ... -++|+|+|.++
T Consensus       110 ~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         110 ISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             EECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             EEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence            75322     1 112   222 36899999875

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.78  E-value=0.065  Score=32.33  Aligned_cols=35  Identities=11%  Similarity=0.093  Sum_probs=30.2

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      .++++|.|+| .+|.-+++.++.+|.+|..+.+.+.
T Consensus        21 p~~vvIiGgG-~~G~E~A~~l~~~g~~Vtlve~~~~   55 (115)
T d1lvla2          21 PQHLVVVGGG-YIGLELGIAYRKLGAQVSVVEARER   55 (115)
T ss_dssp             CSEEEEECCS-HHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCeEEEECCC-HHHHHHHHHHhhcccceEEEeeecc
Confidence            4789999999 9999999999999999887776553

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=93.78  E-value=0.17  Score=32.65  Aligned_cols=82  Identities=15%  Similarity=0.205  Sum_probs=53.2

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHC-CCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecCCCc
Q psy2961          13 VVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGN   91 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~-g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~g~~   91 (202)
                      +|.|+|.| .+|...+...+.. ++++++++++..+      ...   ...+..+.+...   ..  ..+|+|+.|++..
T Consensus         5 rvgiiG~G-~ig~~~~~~l~~~~~~elvav~~~~~~------~~~---~~~~~~~~~~~~---~~--~~~D~Vvi~tp~~   69 (170)
T d1f06a1           5 RVAIVGYG-NLGRSVEKLIAKQPDMDLVGIFSRRAT------LDT---KTPVFDVADVDK---HA--DDVDVLFLCMGSA   69 (170)
T ss_dssp             EEEEECCS-HHHHHHHHHHTTCSSEEEEEEEESSSC------CSS---SSCEEEGGGGGG---TT--TTCSEEEECSCTT
T ss_pred             eEEEECCh-HHHHHHHHHHHhCCCcEEEEEEecccc------ccc---ccccccchhhhh---hc--cccceEEEeCCCc
Confidence            68999987 8998877777754 6788888877653      111   112222222221   11  4689999988776


Q ss_pred             hH-HHHHHhcccCcEEEEE
Q psy2961          92 SA-TNLLRTLVSKGVMVTY  109 (202)
Q Consensus        92 ~~-~~~~~~l~~~G~~v~~  109 (202)
                      .- ..+.++|..|-+++++
T Consensus        70 ~h~~~a~~aL~aG~~vv~~   88 (170)
T d1f06a1          70 TDIPEQAPKFAQFACTVDT   88 (170)
T ss_dssp             THHHHHHHHHTTTSEEECC
T ss_pred             ccHHHHHHHHHCCCcEEEe
Confidence            54 4477888888887754

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=93.63  E-value=0.25  Score=31.96  Aligned_cols=95  Identities=15%  Similarity=0.087  Sum_probs=56.7

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHC---CCcEEEEecCcccHHHHHHHHHhc----CC---c-------eEeC--------hh
Q psy2961          13 VVIQNGANSACGQNVIQIARHW---GLKTINIVRNRDDIDKLKSYLKSL----GA---D-------YVFT--------EE   67 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~---g~~vi~~~~~~~~~~~~~~~~~~l----g~---~-------~v~~--------~~   67 (202)
                      +|.|.|-| -+|.++.+.+...   ..+++++-+..+  .+...++-++    |.   +       .+++        ..
T Consensus         2 kIgINGfG-RIGR~v~R~~~~~~~~~i~vvaINd~~~--~e~~ayLlkyDS~hG~~~~~v~~~~~~l~ing~~I~~~~~~   78 (169)
T d1hdgo1           2 RVAINGFG-RIGRLVYRIIYERKNPDIEVVAINDLTD--TKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEP   78 (169)
T ss_dssp             EEEEECCS-HHHHHHHHHHHHHTCTTCEEEEEECSSC--HHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCS
T ss_pred             EEEEECCC-hHHHHHHHHHHhccCCCEEEEEeccCcc--HHHHHHHHhccccccccCceEEEECCEEEECCEEEEEEeCC
Confidence            68999988 8999999877642   467777766543  2344555333    21   1       1111        12


Q ss_pred             HHHhHHHhhCCCCCeEEEecCCCchHH-HHHHhcccCcEEEEEecc
Q psy2961          68 ELRNISRDASIPKPKLALNCVGGNSAT-NLLRTLVSKGVMVTYGGM  112 (202)
Q Consensus        68 ~~~~~~~~~~~~~~d~vid~~g~~~~~-~~~~~l~~~G~~v~~g~~  112 (202)
                      ++.++.+.  ..++|+|+||+|--... .+...+..|.+-|.+..+
T Consensus        79 ~p~~i~W~--~~gvD~ViEcTG~f~t~~~~~~hl~~GakkViiSAP  122 (169)
T d1hdgo1          79 DPSKLPWK--DLGVDFVIESTGVFRNREKAELHLQAGAKKVIITAP  122 (169)
T ss_dssp             SGGGSCHH--HHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSC
T ss_pred             ChhhCCcc--ccCCCEEEEecceeccccchhhhccCCCceEEEecc
Confidence            23332111  14799999999975544 366678777666666533

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=93.55  E-value=0.35  Score=31.25  Aligned_cols=97  Identities=16%  Similarity=0.078  Sum_probs=58.2

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHC-CCcEEEEecCcccHHHHHHHHHhc----CC---c-------eEeCh--------hHH
Q psy2961          13 VVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSL----GA---D-------YVFTE--------EEL   69 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~-g~~vi~~~~~~~~~~~~~~~~~~l----g~---~-------~v~~~--------~~~   69 (202)
                      +|.|.|-| -+|.++.+.+... ..+++++-..... .+...++-++    |.   +       .+++.        .++
T Consensus         3 kIgINGFG-RIGR~v~R~~~~~~~~~ivaINd~~~~-~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~~~~~~~p   80 (169)
T d1u8fo1           3 KVGVNGFG-RIGRLVTRAAFNSGKVDIVAINDPFID-LNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDP   80 (169)
T ss_dssp             EEEEECCS-HHHHHHHHHHHHHCSSEEEEEECSSSC-HHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred             EEEEECCc-HHHHHHHHHHHHCCCcEEEEecCCCcc-HHHHHHHHhhccccCCcCCeEEEECCEEEECCEEEEEEECCCh
Confidence            68999988 8999999877644 4677777664322 1234444333    21   1       11111        122


Q ss_pred             HhHHHhhCCCCCeEEEecCCCchHHH-HHHhcccCcEEEEEeccC
Q psy2961          70 RNISRDASIPKPKLALNCVGGNSATN-LLRTLVSKGVMVTYGGMS  113 (202)
Q Consensus        70 ~~~~~~~~~~~~d~vid~~g~~~~~~-~~~~l~~~G~~v~~g~~~  113 (202)
                      .++.  ....++|+|+||+|--.... +...+..|.+-|.+..+.
T Consensus        81 ~~i~--W~~~~vDiViEcTG~f~~~~~~~~hl~~gakkViiSaP~  123 (169)
T d1u8fo1          81 SKIK--WGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPS  123 (169)
T ss_dssp             GGCC--TTTTTCCEEEECSSSCCSHHHHGGGGGGTCSEEEESSCC
T ss_pred             hhCC--ccccCCCEEEEecceeccHHHHHHHHhcCCceEeecccc
Confidence            2211  12358999999999765444 556788887777776443

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=93.52  E-value=0.16  Score=34.39  Aligned_cols=90  Identities=12%  Similarity=0.057  Sum_probs=54.4

Q ss_pred             EEEEeCCCcHHHH-HHHHHHH-HCCCcEEEEecCcccHHHHHHHHHhcCCc--eEeChhHHHhHHHhhCCCCCeEEEecC
Q psy2961          13 VVIQNGANSACGQ-NVIQIAR-HWGLKTINIVRNRDDIDKLKSYLKSLGAD--YVFTEEELRNISRDASIPKPKLALNCV   88 (202)
Q Consensus        13 ~VlI~g~~~~vG~-~~i~la~-~~g~~vi~~~~~~~~~~~~~~~~~~lg~~--~v~~~~~~~~~~~~~~~~~~d~vid~~   88 (202)
                      +|.|.|+| .+|. ..+...+ .-+.+++++++...+  ......++++.+  .+..+.++.+   ......+|+|+-|+
T Consensus        35 riaiIG~G-~~~~~~~~~~~~~~~~~~ivav~d~~~~--~a~~~~~~~~i~~~~~~~~~d~~e---ll~~~~iD~V~I~t  108 (221)
T d1h6da1          35 GYAIVGLG-KYALNQILPGFAGCQHSRIEALVSGNAE--KAKIVAAEYGVDPRKIYDYSNFDK---IAKDPKIDAVYIIL  108 (221)
T ss_dssp             EEEEECCS-HHHHHTHHHHTTTCSSEEEEEEECSCHH--HHHHHHHHTTCCGGGEECSSSGGG---GGGCTTCCEEEECS
T ss_pred             EEEEEcCc-HHHHHHHHHHHHhCCCceEEEEecCCHH--HHHHHHHhhccccccccccCchhh---hcccccceeeeecc
Confidence            78899998 7885 3444434 347889999887643  134455666653  2333444444   22336799998888


Q ss_pred             CCchHH-HHHHhcccCcEEEEE
Q psy2961          89 GGNSAT-NLLRTLVSKGVMVTY  109 (202)
Q Consensus        89 g~~~~~-~~~~~l~~~G~~v~~  109 (202)
                      ....-. .+..+|..| .=|.+
T Consensus       109 p~~~H~~~~~~al~~g-k~v~~  129 (221)
T d1h6da1         109 PNSLHAEFAIRAFKAG-KHVMC  129 (221)
T ss_dssp             CGGGHHHHHHHHHHTT-CEEEE
T ss_pred             chhhhhhHHHHhhhcc-hhhhc
Confidence            765533 366777655 43443

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=93.47  E-value=0.38  Score=29.28  Aligned_cols=90  Identities=12%  Similarity=0.232  Sum_probs=56.5

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCCCeEEEecCCCc
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNCVGGN   91 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~vid~~g~~   91 (202)
                      .++|+|.+ .+|..+++.++  +..++++...++    +.+.++..|...+. |..+...+++ .+-..++.++-++..+
T Consensus         2 HivI~G~g-~~g~~l~~~L~--~~~i~vi~~d~~----~~~~~~~~~~~~i~Gd~~~~~~L~~-a~i~~A~~vi~~~~~d   73 (129)
T d2fy8a1           2 HVVICGWS-ESTLECLRELR--GSEVFVLAEDEN----VRKKVLRSGANFVHGDPTRVSDLEK-ANVRGARAVIVNLESD   73 (129)
T ss_dssp             CEEEESCC-HHHHHHHHTSC--GGGEEEEESCTT----HHHHHHHTTCEEEESCTTSHHHHHH-TTCTTCSEEEECCSSH
T ss_pred             EEEEECCC-HHHHHHHHHHc--CCCCEEEEcchH----HHHHHHhcCccccccccCCHHHHHH-hhhhcCcEEEEeccch
Confidence            58899988 89998888764  556666665554    56777777877665 3333221333 2225678888777765


Q ss_pred             hHHH----HHHhcccCcEEEEEe
Q psy2961          92 SATN----LLRTLVSKGVMVTYG  110 (202)
Q Consensus        92 ~~~~----~~~~l~~~G~~v~~g  110 (202)
                      ....    ..+.+.|..+++...
T Consensus        74 ~~n~~~~~~~r~~~~~~~iia~~   96 (129)
T d2fy8a1          74 SETIHCILGIRKIDESVRIIAEA   96 (129)
T ss_dssp             HHHHHHHHHHHHHCSSSCEEEEC
T ss_pred             hhhHHHHHHHHHHCCCceEEEEE
Confidence            4332    345667777766654

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.31  E-value=0.18  Score=36.14  Aligned_cols=93  Identities=11%  Similarity=0.112  Sum_probs=54.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCC---c-------eEeChhHHHh-HHHhhCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA---D-------YVFTEEELRN-ISRDASI   78 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~---~-------~v~~~~~~~~-~~~~~~~   78 (202)
                      ..++|||.|+|+  |..+-.++++...+.+.++.-+..   -.+.++++-.   .       .++ ..|-.. +++.  .
T Consensus       106 ~pk~VLIiGgG~--G~~~rellk~~~v~~v~~VEID~~---Vv~~a~~~~~~~~~~~~dprv~i~-i~Da~~~l~~~--~  177 (312)
T d2b2ca1         106 DPKRVLIIGGGD--GGILREVLKHESVEKVTMCEIDEM---VIDVAKKFLPGMSCGFSHPKLDLF-CGDGFEFLKNH--K  177 (312)
T ss_dssp             SCCEEEEESCTT--SHHHHHHTTCTTCCEEEEECSCHH---HHHHHHHHCTTTSGGGGCTTEEEE-CSCHHHHHHHC--T
T ss_pred             CCCeEEEeCCCc--hHHHHHHHHcCCcceEEEEcccHH---HHHHHHhhchhhccccCCCCeEEE-EchHHHHHHhC--C
Confidence            457899999984  566667778777665666655543   3455554321   1       111 134444 5542  3


Q ss_pred             CCCeEEEecCCCc-----------hHHHHHHhcccCcEEEEEe
Q psy2961          79 PKPKLALNCVGGN-----------SATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        79 ~~~d~vid~~g~~-----------~~~~~~~~l~~~G~~v~~g  110 (202)
                      ..+|+||--...+           .+..+.++|+++|.++.-+
T Consensus       178 ~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~  220 (312)
T d2b2ca1         178 NEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG  220 (312)
T ss_dssp             TCEEEEEECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred             CCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEec
Confidence            5799986422211           1223567999999999865

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=93.25  E-value=0.14  Score=35.16  Aligned_cols=94  Identities=7%  Similarity=-0.035  Sum_probs=55.0

Q ss_pred             CEEEEeCCCcH---HHHHHHHHHHHC--CCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEe
Q psy2961          12 DVVIQNGANSA---CGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALN   86 (202)
Q Consensus        12 ~~VlI~g~~~~---vG~~~i~la~~~--g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid   86 (202)
                      =+|.|.|.|+.   ++...+...+..  +++++++++...+  ...+.+++++......+.++.++.   ....+|+|+.
T Consensus        17 irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~--~~~~~~~~~~~~~~~~~~~~~~l~---~~~~iD~V~i   91 (237)
T d2nvwa1          17 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLK--SSLQTIEQLQLKHATGFDSLESFA---QYKDIDMIVV   91 (237)
T ss_dssp             EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHH--HHHHHHHHTTCTTCEEESCHHHHH---HCTTCSEEEE
T ss_pred             eEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHH--HHHHHHHhcccccceeecchhhcc---cccccceeec
Confidence            37899998742   444444444433  5788988877643  234555777765433334444421   1257999999


Q ss_pred             cCCCchHHH-HHHhcccC-----cEEEEEe
Q psy2961          87 CVGGNSATN-LLRTLVSK-----GVMVTYG  110 (202)
Q Consensus        87 ~~g~~~~~~-~~~~l~~~-----G~~v~~g  110 (202)
                      |+....-.+ ...+|..|     +.-|.+-
T Consensus        92 ~tp~~~h~~~~~~al~aG~~~~~~k~V~~E  121 (237)
T d2nvwa1          92 SVKVPEHYEVVKNILEHSSQNLNLRYLYVE  121 (237)
T ss_dssp             CSCHHHHHHHHHHHHHHSSSCSSCCEEEEE
T ss_pred             cCCCcchhhHHHHHHHhcccccCCceEEEe
Confidence            987665443 55566543     3445554

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=93.18  E-value=0.44  Score=29.83  Aligned_cols=77  Identities=14%  Similarity=0.018  Sum_probs=47.5

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeC---hhHHHh-HHHhhCC-CCCeEEEe
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT---EEELRN-ISRDASI-PKPKLALN   86 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~---~~~~~~-~~~~~~~-~~~d~vid   86 (202)
                      .+|.|.|+.|.+|...+..++..|++|.+..+.++.    .......+++.++.   ...... +.+.... ..=.+++|
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~iiiD   85 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA----VAESILANADVVIVSVPINLTLETIERLKPYLTENMLLAD   85 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG----GHHHHHTTCSEEEECSCGGGHHHHHHHHGGGCCTTSEEEE
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccccc----ccchhhhhccccccccchhhheeeeecccccccCCceEEE
Confidence            488999965599999999999999999888877653    22223345555552   222222 3332221 11247888


Q ss_pred             cCCCch
Q psy2961          87 CVGGNS   92 (202)
Q Consensus        87 ~~g~~~   92 (202)
                      +++...
T Consensus        86 ~~Svk~   91 (152)
T d2pv7a2          86 LTSVKR   91 (152)
T ss_dssp             CCSCCH
T ss_pred             ecccCH
Confidence            876543

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=93.09  E-value=0.2  Score=32.50  Aligned_cols=94  Identities=16%  Similarity=0.132  Sum_probs=56.5

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHC-CCcEEEEecCcccHHHHHHHHHhcCC-------c-------eEeC--------hhHH
Q psy2961          13 VVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGA-------D-------YVFT--------EEEL   69 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~-g~~vi~~~~~~~~~~~~~~~~~~lg~-------~-------~v~~--------~~~~   69 (202)
                      +|.|.|-| -+|.++.+.+... ..+++++-... .. +...++-++..       +       .+++        ..++
T Consensus         3 kIgINGfG-RIGR~v~R~~l~~~~~~ivaINd~~-d~-~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~~~p   79 (171)
T d3cmco1           3 KVGINGFG-RIGRNVFRAALKNPDIEVVAVNDLT-DA-NTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDP   79 (171)
T ss_dssp             EEEEESCS-HHHHHHHHHHTTCTTEEEEEEECSS-CH-HHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred             EEEEECCC-HHHHHHHHHHhhCCCcEEEEEcCCC-CH-HHHhhhhcccccCCcccccccccCCCEEeCCcceeeEecCCH
Confidence            68899998 8999998777644 46777776654 32 34445533311       1       1111        1223


Q ss_pred             Hh-HHHhhCCCCCeEEEecCCCchHHH-HHHhcccCcEEEEEecc
Q psy2961          70 RN-ISRDASIPKPKLALNCVGGNSATN-LLRTLVSKGVMVTYGGM  112 (202)
Q Consensus        70 ~~-~~~~~~~~~~d~vid~~g~~~~~~-~~~~l~~~G~~v~~g~~  112 (202)
                      .+ -+.   ..++|+|+||+|--...+ +...+..+.+-|.+..+
T Consensus        80 ~~i~W~---~~~vDiViEcTG~f~t~~~~~~hl~~gakkViiSap  121 (171)
T d3cmco1          80 ENLAWG---EIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAP  121 (171)
T ss_dssp             GGCCTG---GGTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSC
T ss_pred             HHcccc---ccCCcEEEEecCccCCHHHHHHHHhCCCceEEEecc
Confidence            33 222   247999999999766554 56677777666666533

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=93.03  E-value=0.075  Score=35.10  Aligned_cols=81  Identities=15%  Similarity=0.067  Sum_probs=48.6

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhc----CCceEeChhHHHh-HHHh---hC---CCC
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL----GADYVFTEEELRN-ISRD---AS---IPK   80 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~l----g~~~v~~~~~~~~-~~~~---~~---~~~   80 (202)
                      ++|.|.|+| .+|...+.++...|.+|+....+++..+...+.+...    -....+...+... +...   +.   -.+
T Consensus         5 ~~vaViGaG-~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   83 (186)
T d1wdka3           5 KQAAVLGAG-IMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGN   83 (186)
T ss_dssp             SSEEEECCH-HHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTGGG
T ss_pred             CEEEEECcC-HHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeecccccccccc
Confidence            468999998 9999999888899999998887776433333332211    0111111222222 2111   11   135


Q ss_pred             CeEEEecCCCchH
Q psy2961          81 PKLALNCVGGNSA   93 (202)
Q Consensus        81 ~d~vid~~g~~~~   93 (202)
                      .|+|++++....-
T Consensus        84 adlViEav~E~l~   96 (186)
T d1wdka3          84 VDLVVEAVVENPK   96 (186)
T ss_dssp             CSEEEECCCSCHH
T ss_pred             cceeeeeecchHH
Confidence            7999999987753

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=93.02  E-value=0.086  Score=32.46  Aligned_cols=78  Identities=26%  Similarity=0.354  Sum_probs=50.2

Q ss_pred             CCCEEEEeCCCc----------HHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-C---hhHHHh-HHH
Q psy2961          10 PGDVVIQNGANS----------ACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-T---EEELRN-ISR   74 (202)
Q Consensus        10 ~g~~VlI~g~~~----------~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~---~~~~~~-~~~   74 (202)
                      .-++|||+|+|.          -.+..++..++..|++++.+-.+++..    ..-.++ ++.++ .   .++..+ ++.
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TV----std~d~-aD~lYfePlt~e~v~~Ii~~   80 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATI----MTDPEM-ADATYIEPIHWEVVRKIIEK   80 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCG----GGCGGG-SSEEECSCCCHHHHHHHHHH
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhh----hcChhh-cceeeeecCCHHHHHHHHHH
Confidence            347899999873          224556666778899999999888752    121222 23333 2   244444 443


Q ss_pred             hhCCCCCeEEEecCCCchHHHH
Q psy2961          75 DASIPKPKLALNCVGGNSATNL   96 (202)
Q Consensus        75 ~~~~~~~d~vid~~g~~~~~~~   96 (202)
                          ..+|.|+-+.|+.....+
T Consensus        81 ----E~pd~il~~~GGQtalnl   98 (127)
T d1a9xa3          81 ----ERPDAVLPTMGGQTALNC   98 (127)
T ss_dssp             ----HCCSEEECSSSHHHHHHH
T ss_pred             ----hCcCCeEEEeeeehHhHH
Confidence                467899999998877663

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=92.99  E-value=0.077  Score=34.46  Aligned_cols=32  Identities=22%  Similarity=0.140  Sum_probs=27.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEe
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIV   42 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~   42 (202)
                      ++++|+|.|+| .+|.-++..++.+|.++.++.
T Consensus         2 ~~~~VvIIGgG-~~G~e~A~~l~~~g~~v~v~~   33 (185)
T d1q1ra1           2 ANDNVVIVGTG-LAGVEVAFGLRASGWEGNIRL   33 (185)
T ss_dssp             CSCEEEEECCS-HHHHHHHHHHHHTTCCSEEEE
T ss_pred             CCCCEEEECCc-HHHHHHHHHHHHcCCceEEEE
Confidence            57899999999 999999999999998754443

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=92.97  E-value=0.076  Score=32.35  Aligned_cols=85  Identities=22%  Similarity=0.307  Sum_probs=51.8

Q ss_pred             CCEEEEeCCCc----------HHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-C---hhHHHh-HHHh
Q psy2961          11 GDVVIQNGANS----------ACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-T---EEELRN-ISRD   75 (202)
Q Consensus        11 g~~VlI~g~~~----------~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~---~~~~~~-~~~~   75 (202)
                      .++|||+|+|.          -.+..+++.++..|+++|.+-.+++..    ..-.++ ++.++ .   .+...+ +.. 
T Consensus         4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTV----std~d~-aD~lYfeplt~e~v~~Ii~~-   77 (121)
T d1a9xa4           4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETV----STDYDT-SDRLYFEPVTLEDVLEIVRI-   77 (121)
T ss_dssp             SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSS----TTSTTS-SSEEECCCCSHHHHHHHHHH-
T ss_pred             CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhh----hcChhh-cCceEEccCCHHHHHHHHHH-
Confidence            46899999873          224556677778899999999888742    111112 23333 2   234444 333 


Q ss_pred             hCCCCCeEEEecCCCchHHHHHHhcccCc
Q psy2961          76 ASIPKPKLALNCVGGNSATNLLRTLVSKG  104 (202)
Q Consensus        76 ~~~~~~d~vid~~g~~~~~~~~~~l~~~G  104 (202)
                         ..+|.|+-..|+.....+..-|...|
T Consensus        78 ---E~p~~ii~~~GGQtalnla~~L~~~g  103 (121)
T d1a9xa4          78 ---EKPKGVIVQYGGQTPLKLARALEAAG  103 (121)
T ss_dssp             ---HCCSEEECSSSTHHHHTTHHHHHHTT
T ss_pred             ---hCCCEEEeehhhhhHHHHHHHHHHcC
Confidence               35688888888887766444443333

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=92.94  E-value=0.086  Score=32.14  Aligned_cols=35  Identities=17%  Similarity=0.078  Sum_probs=30.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCc
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR   45 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~   45 (202)
                      .+.+|+|.|+| .+|.-+++.+...|.+|..+.+.+
T Consensus        31 ~~~~vvIiGgG-~iG~E~A~~l~~~g~~Vtlv~~~~   65 (122)
T d1xhca2          31 NSGEAIIIGGG-FIGLELAGNLAEAGYHVKLIHRGA   65 (122)
T ss_dssp             HHSEEEEEECS-HHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             cCCcEEEECCc-HHHHHHHHHhhcccceEEEEeccc
Confidence            45789999999 999999999999999998887655

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.92  E-value=0.61  Score=29.26  Aligned_cols=37  Identities=19%  Similarity=0.311  Sum_probs=27.4

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcc
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRD   46 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~   46 (202)
                      ..+.+|.|.|+| .+|..++..+...+. .-++..+.++
T Consensus         4 ~~~~KI~IiGaG-~vG~~~a~~l~~~~l~~el~L~Di~~   41 (148)
T d1ldna1           4 NGGARVVVIGAG-FVGASYVFALMNQGIADEIVLIDANE   41 (148)
T ss_dssp             TTSCEEEEECCS-HHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCCeEEEECcC-HHHHHHHHHHHhcCCCceEEEEeecc
Confidence            346789999985 899998888887774 4566666544

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.87  E-value=0.18  Score=35.66  Aligned_cols=94  Identities=11%  Similarity=0.131  Sum_probs=53.5

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcC---------Cc-eEeChhHHHh-HHHhhC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG---------AD-YVFTEEELRN-ISRDAS   77 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg---------~~-~v~~~~~~~~-~~~~~~   77 (202)
                      ...++|||.|+|+  |..+-.++++.+...+.++.-+..   -.+.++++-         .. .++ ..|-.. +++.  
T Consensus        77 ~~pk~vLiiGgG~--G~~~~~~l~~~~~~~v~~vEiD~~---Vv~~a~~~~~~~~~~~~d~rv~i~-~~Da~~~l~~~--  148 (285)
T d2o07a1          77 PNPRKVLIIGGGD--GGVLREVVKHPSVESVVQCEIDED---VIQVSKKFLPGMAIGYSSSKLTLH-VGDGFEFMKQN--  148 (285)
T ss_dssp             SSCCEEEEEECTT--SHHHHHHTTCTTCCEEEEEESCHH---HHHHHHHHCHHHHGGGGCTTEEEE-ESCHHHHHHTC--
T ss_pred             cCcCeEEEeCCCc--hHHHHHHHHcCCcceeeeccCCHH---HHHHHHhhchhhccccCCCCceEE-EccHHHHHhcC--
Confidence            3457999999885  566667777777766666655443   244444331         11 111 134344 5432  


Q ss_pred             CCCCeEEE-ecCCC----------chHHHHHHhcccCcEEEEEe
Q psy2961          78 IPKPKLAL-NCVGG----------NSATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        78 ~~~~d~vi-d~~g~----------~~~~~~~~~l~~~G~~v~~g  110 (202)
                      ...+|+|| |....          +.+..+.+.|+++|.++.-+
T Consensus       149 ~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~  192 (285)
T d2o07a1         149 QDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG  192 (285)
T ss_dssp             SSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence            35799975 43321          11223567999999998754

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=92.86  E-value=0.34  Score=31.30  Aligned_cols=99  Identities=16%  Similarity=0.133  Sum_probs=49.3

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCc-eEeCh-hH-HHhHHHhhCCCCCeE
Q psy2961           7 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD-YVFTE-EE-LRNISRDASIPKPKL   83 (202)
Q Consensus         7 ~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~-~v~~~-~~-~~~~~~~~~~~~~d~   83 (202)
                      ++.+|.+||=.++|+  |...+. |...|++++++-.+++...-..+-++.++.. .+... .+ +... ....+..||+
T Consensus        38 ~~~~g~~vLDl~~G~--G~~~i~-a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~-~~~~~~~fD~  113 (171)
T d1ws6a1          38 RYPRRGRFLDPFAGS--GAVGLE-AASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPE-AKAQGERFTV  113 (171)
T ss_dssp             HCTTCCEEEEETCSS--CHHHHH-HHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHH-HHHTTCCEEE
T ss_pred             cccCCCeEEEecccc--chhhhh-hhhccchhhhcccCHHHHhhhhHHHHhhccccceeeeehhccccc-ccccCCccce
Confidence            356788888777654  444454 3456899887554444221112223445553 33321 22 2111 1122357999


Q ss_pred             EE-ec---CCCch-HHHHH--HhcccCcEEEEE
Q psy2961          84 AL-NC---VGGNS-ATNLL--RTLVSKGVMVTY  109 (202)
Q Consensus        84 vi-d~---~g~~~-~~~~~--~~l~~~G~~v~~  109 (202)
                      || |.   .+-.. ...++  .+++++|.++.-
T Consensus       114 If~DPPY~~~~~~~l~~l~~~~ll~~~g~ivie  146 (171)
T d1ws6a1         114 AFMAPPYAMDLAALFGELLASGLVEAGGLYVLQ  146 (171)
T ss_dssp             EEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEE
T ss_pred             eEEccccccCHHHHHHHHHHcCCcCCCeEEEEE
Confidence            86 32   12111 22233  357888877653

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=92.84  E-value=0.4  Score=31.05  Aligned_cols=96  Identities=18%  Similarity=0.079  Sum_probs=56.0

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCC---CcEEEEecCcccHHHHHHHHHhc----CC---c-------e-EeCh--------
Q psy2961          13 VVIQNGANSACGQNVIQIARHWG---LKTINIVRNRDDIDKLKSYLKSL----GA---D-------Y-VFTE--------   66 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g---~~vi~~~~~~~~~~~~~~~~~~l----g~---~-------~-v~~~--------   66 (202)
                      +|.|.|-| -+|.++.+.+....   .+++++-... . .+...++-++    |.   +       . +++.        
T Consensus         2 kIgINGfG-RIGR~v~R~~~~~~~~~i~ivaINd~~-~-~~~~ayLlkyDSvhG~~~~~i~~~~~~~~~ing~~I~~~~~   78 (172)
T d1rm4a1           2 KVAINGFG-RIGRNFLRCWHGRKDSPLDVVVINDTG-G-VKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSD   78 (172)
T ss_dssp             EEEEECCS-HHHHHHHHHHHHCSSCSEEEEEEECTT-C-HHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEECC
T ss_pred             EEEEECCC-HHHHHHHHHHHhCCCCCEEEEEEcCCC-C-HHHHHHHHhcCcccccccceeEecCCcceEECCEEEEEecC
Confidence            68899988 89999998765432   4667666654 3 2344554333    21   1       1 1121        


Q ss_pred             hHHHhHHHhhCCCCCeEEEecCCCchHH-HHHHhcccCcEEEEEeccC
Q psy2961          67 EELRNISRDASIPKPKLALNCVGGNSAT-NLLRTLVSKGVMVTYGGMS  113 (202)
Q Consensus        67 ~~~~~~~~~~~~~~~d~vid~~g~~~~~-~~~~~l~~~G~~v~~g~~~  113 (202)
                      .++.++.+.  ..++|+|+||+|--... .+...|..|.+-|.+..+.
T Consensus        79 ~~p~~i~W~--~~gvDiViEcTG~f~~~~~~~~hl~~GakkViiSAP~  124 (172)
T d1rm4a1          79 RNPVNLPWG--DMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPG  124 (172)
T ss_dssp             SCGGGSCHH--HHTCCEEEECSSSCCBHHHHHHHHHTTCSCEEESSCC
T ss_pred             CChHHCChh--hcCCCEEEecCceEccHHHHHHHHhcCCceEEeeccc
Confidence            122221111  14799999999975444 3667787777666665433

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=92.81  E-value=0.17  Score=34.96  Aligned_cols=97  Identities=18%  Similarity=0.150  Sum_probs=56.1

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHC-CCcEEEEecCcccHHHHHHHHHhcCCceEeC--hhHHHhHHHhhCCCCCeE
Q psy2961           7 SLSPGDVVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVFT--EEELRNISRDASIPKPKL   83 (202)
Q Consensus         7 ~~~~g~~VlI~g~~~~vG~~~i~la~~~-g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~--~~~~~~~~~~~~~~~~d~   83 (202)
                      .+....+||=+|+|  .|..++.+++.. +.+++++. .++......+.+.+.+...-+.  ..|+   .+.. ..++|+
T Consensus        77 d~~~~~~VLDvGcG--~G~~~~~la~~~p~~~~~~~D-~~~~~~~a~~~~~~~~~~~rv~~~~~D~---~~~~-~~~~D~  149 (253)
T d1tw3a2          77 DWTNVRHVLDVGGG--KGGFAAAIARRAPHVSATVLE-MAGTVDTARSYLKDEGLSDRVDVVEGDF---FEPL-PRKADA  149 (253)
T ss_dssp             CCTTCSEEEEETCT--TSHHHHHHHHHCTTCEEEEEE-CTTHHHHHHHHHHHTTCTTTEEEEECCT---TSCC-SSCEEE
T ss_pred             CCccCCEEEEeCCC--CCHHHHHHHHhcceeEEEEcc-CHHHHHHHHHHHHHhhcccchhhccccc---hhhc-ccchhh
Confidence            45677899888886  588899999877 45655554 4443333344444444321111  1121   1111 246899


Q ss_pred             EEecCC-----Cch----HHHHHHhcccCcEEEEEe
Q psy2961          84 ALNCVG-----GNS----ATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        84 vid~~g-----~~~----~~~~~~~l~~~G~~v~~g  110 (202)
                      |+-..-     .+.    +.++.+.|+|||+++.+-
T Consensus       150 v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e  185 (253)
T d1tw3a2         150 IILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHE  185 (253)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             eeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEe
Confidence            875332     221    234678899999999865

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.80  E-value=0.13  Score=32.68  Aligned_cols=39  Identities=8%  Similarity=-0.025  Sum_probs=32.6

Q ss_pred             cCCCCCCEEEEe--CCCcHHHHHHHHHHHHCCCcEEEEecCc
Q psy2961           6 NSLSPGDVVIQN--GANSACGQNVIQIARHWGLKTINIVRNR   45 (202)
Q Consensus         6 ~~~~~g~~VlI~--g~~~~vG~~~i~la~~~g~~vi~~~~~~   45 (202)
                      .+..++..|+|+  |++ -+|+-+++.+..+|.+|..+...+
T Consensus        34 ~~~~~~~~vvi~d~ggg-~ig~e~A~~la~~G~~Vtlv~~~~   74 (156)
T d1djqa2          34 GKKKIGKRVVILNADTY-FMAPSLAEKLATAGHEVTIVSGVH   74 (156)
T ss_dssp             TCSCCCSEEEEEECCCS-SHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CccccCCceEEEecCCC-hHHHHHHHHHHHcCCeEEEEecCC
Confidence            356788898887  444 899999999999999999988765

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.72  E-value=0.13  Score=36.07  Aligned_cols=100  Identities=14%  Similarity=0.101  Sum_probs=51.4

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHC-----CC--cEEEEecCcccHHHHHHHHHhc----C-CceE-e-----Ch
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHW-----GL--KTINIVRNRDDIDKLKSYLKSL----G-ADYV-F-----TE   66 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~-----g~--~vi~~~~~~~~~~~~~~~~~~l----g-~~~v-~-----~~   66 (202)
                      .+..++.-+||=.|+|+  |..+..+++.+     +.  +++++-.++.    ..+.+++.    . ...+ +     +-
T Consensus        35 l~~~~~~~~VLDiGcG~--G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~----~l~~a~~~~~~~~~~~~~~~~~~~~~~  108 (280)
T d1jqea_          35 IGDTKSEIKILSIGGGA--GEIDLQILSKVQAQYPGVCINNEVVEPSAE----QIAKYKELVAKISNLENVKFAWHKETS  108 (280)
T ss_dssp             TTTTCSEEEEEEETCTT--SHHHHHHHHHHHHHSTTCEEEEEEECCCHH----HHHHHHHHHTTCCSCTTEEEEEECSCH
T ss_pred             hccCCCCCeEEEEcCCC--CHHHHHHHHHhhhhccCCceEEEEEeCcHH----HHHHHHHHHhhccccccccccchhhhh
Confidence            34445555898888874  55555554432     22  3444443333    34444321    1 1111 1     11


Q ss_pred             hHHHh-HHHhhCCCCCeEEEecCCC-----c--hHHHHHHhcccCcEEEEEe
Q psy2961          67 EELRN-ISRDASIPKPKLALNCVGG-----N--SATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        67 ~~~~~-~~~~~~~~~~d~vid~~g~-----~--~~~~~~~~l~~~G~~v~~g  110 (202)
                      +++.. .........+|+|+-.-.-     +  .+..+.++|+|+|.++...
T Consensus       109 ~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~  160 (280)
T d1jqea_         109 SEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIV  160 (280)
T ss_dssp             HHHHHHHTTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             hhhcchhcccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEE
Confidence            22222 3333345679999864432     1  1234678999999888765

>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Cystathionine beta-synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.64  E-value=0.24  Score=36.14  Aligned_cols=103  Identities=20%  Similarity=0.282  Sum_probs=67.7

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeCh--------h----------
Q psy2961           6 NSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE--------E----------   67 (202)
Q Consensus         6 ~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~--------~----------   67 (202)
                      +.+++++.|+. ..+|..|.+++..|+.+|.+.+++..... ..++.+.++.+|++-+...        .          
T Consensus        92 g~~~~~~~vv~-aSsGN~g~a~A~~a~~~Gi~~~iv~p~~~-~~~k~~~i~~~GA~vv~v~~~~~~~~~~~~~~~~~~~~  169 (355)
T d1jbqa_          92 GTLKPGDTIIE-PTSGNTGIGLALAAAVRGYRCIIVMPEKM-SSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLK  169 (355)
T ss_dssp             TCSCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEECSCC-CHHHHHHHHHTTCEEEECCC-------CCHHHHHHHHH
T ss_pred             CCcccCceEEE-ecccchhhHHHHHHHhccCCeEEEeeccc-hHHHHHHHHhcCCeEEEecccccchhhhhhhhHHHHHH
Confidence            44566676655 45559999999999999998877775443 3568899999998755410        0          


Q ss_pred             ----------------HH----H----hHHHhhCCCCCeEEEecCCCchHHH----HHHhcccCcEEEEEec
Q psy2961          68 ----------------EL----R----NISRDASIPKPKLALNCVGGNSATN----LLRTLVSKGVMVTYGG  111 (202)
Q Consensus        68 ----------------~~----~----~~~~~~~~~~~d~vid~~g~~~~~~----~~~~l~~~G~~v~~g~  111 (202)
                                      +.    .    ++.+-+ +..+|.++-++|+--...    .++...+.-+++.+..
T Consensus       170 ~~~~~~~~~~~~~~~~~~~ag~~t~~~EI~~ql-~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~kii~vep  240 (355)
T d1jbqa_         170 NEIPNSHILDQYRNASNPLAHYDTTADEILQQC-DGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDP  240 (355)
T ss_dssp             HHSTTEECCCTTTCTHHHHHHHHTHHHHHHHHH-TTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred             HhccccccccccCcccchhhhcccchhhhhhhc-CCCCCeeEecccCCchHHHHHHHHhhcCCcceEEeecc
Confidence                            00    0    011111 245899999998765433    4556677888887763

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=92.61  E-value=0.47  Score=30.50  Aligned_cols=96  Identities=15%  Similarity=0.074  Sum_probs=58.2

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHC-CCcEEEEecCcccHHHHHHHHHhc----CC---c-------eEeC--------hhHH
Q psy2961          13 VVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSL----GA---D-------YVFT--------EEEL   69 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~-g~~vi~~~~~~~~~~~~~~~~~~l----g~---~-------~v~~--------~~~~   69 (202)
                      +|.|.|-| -+|.++.+.+... ..+++++-...-. .+...++-++    |.   +       .+++        ..++
T Consensus         2 kigINGfG-RIGR~v~R~~~~~~~~~iv~INd~~~d-~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~i~~~~~p   79 (166)
T d2b4ro1           2 KLGINGFG-RIGRLVFRAAFGRKDIEVVAINDPFMD-LNHLCYLLKYDSVHGQFPCEVTHADGFLLIGEKKVSVFAEKDP   79 (166)
T ss_dssp             EEEEECCS-HHHHHHHHHHHTCSSEEEEEEECTTCC-HHHHHHHHHCCTTTCSCSSCEEEETTEEEESSCEEEEECCSSG
T ss_pred             eEEEECCC-HHHHHHHHHHhhCCCcEEEEECCCCCC-hHHhhhhhhcccccccceeeeccCCceEEecCcEEEEEeCCCh
Confidence            58899999 8999999887754 5677777654222 2244555333    21   1       1111        1233


Q ss_pred             Hh-HHHhhCCCCCeEEEecCCCchHHH-HHHhcccCcEEEEEeccC
Q psy2961          70 RN-ISRDASIPKPKLALNCVGGNSATN-LLRTLVSKGVMVTYGGMS  113 (202)
Q Consensus        70 ~~-~~~~~~~~~~d~vid~~g~~~~~~-~~~~l~~~G~~v~~g~~~  113 (202)
                      .+ -+..   .++|+|+||+|--.... +...+..|.+-|.+..+.
T Consensus        80 ~~i~W~~---~gvdiViEcTG~f~~~~~~~~hl~~gakkViiSAP~  122 (166)
T d2b4ro1          80 SQIPWGK---CQVDVVCESTGVFLTKELASSHLKGGAKKVIMSAPP  122 (166)
T ss_dssp             GGCCHHH---HTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCC
T ss_pred             HHccccc---cCCCEEEEecccccchhhhhhhhccCCCEEEEeccc
Confidence            33 2222   47999999999765544 567777777666666443

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=92.59  E-value=0.76  Score=29.55  Aligned_cols=43  Identities=16%  Similarity=0.094  Sum_probs=33.2

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcC
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG   59 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg   59 (202)
                      .+|-|.|.| .+|...+.-+...|.+|++..++++    +.+.+.+.+
T Consensus         3 ~nIg~IGlG-~MG~~mA~~L~~~G~~V~v~dr~~~----~~~~l~~~~   45 (176)
T d2pgda2           3 ADIALIGLA-VMGQNLILNMNDHGFVVCAFNRTVS----KVDDFLANE   45 (176)
T ss_dssp             BSEEEECCS-HHHHHHHHHHHHTTCCEEEECSSTH----HHHHHHHTT
T ss_pred             CcEEEEeEh-HHHHHHHHHHHHCCCeEEEEcCCHH----HHHHHHHhc
Confidence            468899998 9999988888888999988877775    455554443

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=92.58  E-value=0.68  Score=29.44  Aligned_cols=87  Identities=8%  Similarity=0.080  Sum_probs=50.2

Q ss_pred             EEEEeCCCcHHHHH-HHHHHHHC-CCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecCCC
Q psy2961          13 VVIQNGANSACGQN-VIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGG   90 (202)
Q Consensus        13 ~VlI~g~~~~vG~~-~i~la~~~-g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~g~   90 (202)
                      +|.|.|+| .+|.- .+...+.. +.+++ +++....  ......+.++...+++  ++.++.+    .++|+|+-|+..
T Consensus         3 rvgiiG~G-~~~~~~~~~~l~~~~~~~~~-~~d~~~~--~~~~~~~~~~~~~~~~--~~~~ll~----~~iD~V~I~tp~   72 (167)
T d1xeaa1           3 KIAMIGLG-DIAQKAYLPVLAQWPDIELV-LCTRNPK--VLGTLATRYRVSATCT--DYRDVLQ----YGVDAVMIHAAT   72 (167)
T ss_dssp             EEEEECCC-HHHHHTHHHHHTTSTTEEEE-EECSCHH--HHHHHHHHTTCCCCCS--STTGGGG----GCCSEEEECSCG
T ss_pred             EEEEEcCC-HHHHHHHHHHHHhCCCcEEE-EEECCHH--HHHHHHHhcccccccc--cHHHhcc----cccceecccccc
Confidence            68899998 78854 56666555 44554 5655432  1334446677665442  3333212    368999988876


Q ss_pred             chHHH-HHHhcccCcEEEEEe
Q psy2961          91 NSATN-LLRTLVSKGVMVTYG  110 (202)
Q Consensus        91 ~~~~~-~~~~l~~~G~~v~~g  110 (202)
                      ..-.. +..++..|=. |.+-
T Consensus        73 ~~H~~~~~~al~~gk~-V~~E   92 (167)
T d1xeaa1          73 DVHSTLAAFFLHLGIP-TFVD   92 (167)
T ss_dssp             GGHHHHHHHHHHTTCC-EEEE
T ss_pred             cccccccccccccccc-cccC
Confidence            65444 5666766533 4443

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=92.52  E-value=0.074  Score=34.57  Aligned_cols=29  Identities=17%  Similarity=0.210  Sum_probs=26.0

Q ss_pred             EEEeCCCcHHHHHHHHHHHHCCCcEEEEec
Q psy2961          14 VIQNGANSACGQNVIQIARHWGLKTINIVR   43 (202)
Q Consensus        14 VlI~g~~~~vG~~~i~la~~~g~~vi~~~~   43 (202)
                      |+|.|+| +.|+.++..+...|.++..+-+
T Consensus         4 ViIIGgG-paGl~AAi~aar~G~~v~iie~   32 (184)
T d1fl2a1           4 VLIVGSG-PAGAAAAIYSARKGIRTGLMGE   32 (184)
T ss_dssp             EEEECCS-HHHHHHHHHHHTTTCCEEEECS
T ss_pred             EEEECcC-HHHHHHHHHHHHcCCeEEEEEE
Confidence            7888999 9999999999999999888864

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=92.50  E-value=0.13  Score=34.97  Aligned_cols=33  Identities=18%  Similarity=0.185  Sum_probs=28.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEec
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVR   43 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~   43 (202)
                      .-.+|+|.|+| ..|++++..+...|.+|.++.+
T Consensus         5 ~~~kVvVIGaG-iaGl~~A~~L~~~G~~V~vier   37 (268)
T d1c0pa1           5 SQKRVVVLGSG-VIGLSSALILARKGYSVHILAR   37 (268)
T ss_dssp             CSCEEEEECCS-HHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCcEEEECcc-HHHHHHHHHHHHCCCCEEEEeC
Confidence            34589999999 9999999999999999887764

>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c)
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=92.47  E-value=1  Score=31.82  Aligned_cols=96  Identities=13%  Similarity=0.162  Sum_probs=63.0

Q ss_pred             EEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeC---hhHHHh----HHHhhC---------
Q psy2961          14 VIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT---EEELRN----ISRDAS---------   77 (202)
Q Consensus        14 VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~---~~~~~~----~~~~~~---------   77 (202)
                      .+|.+.+|..|.+++..|+..|.+.+.+...... .++.+.++.+|++-+..   +++...    ..+..+         
T Consensus        71 ~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~-~~k~~~l~~~Ga~vi~~~~~~~~~~~~a~~~a~~~g~~~~~~~~~  149 (318)
T d1v71a1          71 GVLTFSSGNHAQAIALSAKILGIPAKIIMPLDAP-EAKVAATKGYGGQVIMYDRYKDDREKMAKEISEREGLTIIPPYDH  149 (318)
T ss_dssp             CEEECCSSHHHHHHHHHHHHTTCCEEEEEETTCC-HHHHHHHHHTTCEEEEECTTTTCHHHHHHHHHHHHTCBCCCSSSS
T ss_pred             eeeeeccchhhHHHHHhhcccccceeeccccccc-HHHHHHHHHcCCcEEeccCCchHHHHHHHHHHHhcCCEecCCccc
Confidence            3566777799999999999999987777755443 45788889999886551   111100    000000         


Q ss_pred             -----------------CCCCeEEEecCCCchHHH----HHHhcccCcEEEEEe
Q psy2961          78 -----------------IPKPKLALNCVGGNSATN----LLRTLVSKGVMVTYG  110 (202)
Q Consensus        78 -----------------~~~~d~vid~~g~~~~~~----~~~~l~~~G~~v~~g  110 (202)
                                       -..+|.+|-++|+--...    .++.+.+..+++.+.
T Consensus       150 ~~~~~g~~t~~~Ei~~q~~~~d~vvv~~G~GG~~~Gi~~~~~~~~~~~~ii~v~  203 (318)
T d1v71a1         150 PHVLAGQGTAAKELFEEVGPLDALFVCLGGGGLLSGSALAARHFAPNCEVYGVE  203 (318)
T ss_dssp             HHHHHHHTHHHHHHHHHHCCCSEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             cccccccchHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHHhhCCCceeeccc
Confidence                             045899998887654432    466778888888765

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=92.32  E-value=1.3  Score=31.56  Aligned_cols=101  Identities=10%  Similarity=0.018  Sum_probs=52.2

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcccHHHHHHHHHhcCC--c--eEeChhHHHh-HHHhh-CC
Q psy2961           6 NSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGA--D--YVFTEEELRN-ISRDA-SI   78 (202)
Q Consensus         6 ~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~~~~~~~~~~~~lg~--~--~v~~~~~~~~-~~~~~-~~   78 (202)
                      ..+.+|++||=..++  +|..++.++ ..|+ +|+.+..++...+...+-++..|.  +  .++ ..|..+ +.... .+
T Consensus       140 ~~~~~g~~VLdlf~~--~G~~sl~aa-~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i-~~d~~~~l~~~~~~~  215 (317)
T d2b78a2         140 NGSAAGKTVLNLFSY--TAAFSVAAA-MGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLV-VMDVFDYFKYARRHH  215 (317)
T ss_dssp             HTTTBTCEEEEETCT--TTHHHHHHH-HTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEE-ESCHHHHHHHHHHTT
T ss_pred             HHhhCCCceeecCCC--CcHHHHHHH-hCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEE-EccHHHHHHHHHhhc
Confidence            346789999877665  344444444 4677 466666665532222222222232  2  122 233333 33322 24


Q ss_pred             CCCeEEEe-cC--CCc-------------hHHHHHHhcccCcEEEEEe
Q psy2961          79 PKPKLALN-CV--GGN-------------SATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        79 ~~~d~vid-~~--g~~-------------~~~~~~~~l~~~G~~v~~g  110 (202)
                      ..||+||- .-  +..             ....++++|+|||.++.+.
T Consensus       216 ~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~s  263 (317)
T d2b78a2         216 LTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIAST  263 (317)
T ss_dssp             CCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            57999763 21  110             1122578899999998876

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=92.20  E-value=0.11  Score=36.88  Aligned_cols=35  Identities=17%  Similarity=0.137  Sum_probs=29.0

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRN   44 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~   44 (202)
                      ....+|+|.|+| ..|+.++..+...|.+|.++-..
T Consensus        28 ~~pkkV~IIGaG-~aGLsaA~~L~~~G~~V~vlE~~   62 (370)
T d2iida1          28 SNPKHVVIVGAG-MAGLSAAYVLAGAGHQVTVLEAS   62 (370)
T ss_dssp             SSCCEEEEECCB-HHHHHHHHHHHHHTCEEEEECSS
T ss_pred             CCCCeEEEECCC-HHHHHHHHHHHHCCCCEEEEeCC
Confidence            445689999999 99999998888889988877544

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.14  E-value=0.073  Score=37.37  Aligned_cols=32  Identities=22%  Similarity=0.254  Sum_probs=28.4

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCc
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRNR   45 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~   45 (202)
                      .|+|.||| +.|++++..++..|.+|+++-+.+
T Consensus         4 ~V~IvGaG-p~Gl~~A~~L~~~G~~v~vlE~~~   35 (292)
T d1k0ia1           4 QVAIIGAG-PSGLLLGQLLHKAGIDNVILERQT   35 (292)
T ss_dssp             SEEEECCS-HHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CEEEECcC-HHHHHHHHHHHHCCCCEEEEeCCC
Confidence            58999999 999999999999999988887654

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=92.10  E-value=0.12  Score=33.14  Aligned_cols=32  Identities=16%  Similarity=0.155  Sum_probs=25.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--cEEEEe
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGL--KTINIV   42 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~--~vi~~~   42 (202)
                      .|.+|+|.|+| .+|+.+++-++..+.  +++.+.
T Consensus         1 ~gkrivIvGgG-~~G~e~A~~l~~~~~~~~Vtlie   34 (186)
T d1fcda1           1 AGRKVVVVGGG-TGGATAAKYIKLADPSIEVTLIE   34 (186)
T ss_dssp             CCCEEEEECCS-HHHHHHHHHHHHHCTTSEEEEEC
T ss_pred             CCCcEEEECcc-HHHHHHHHHHHHcCCCCcEEEEE
Confidence            48899999999 999999888888775  455544

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=92.08  E-value=0.7  Score=28.90  Aligned_cols=70  Identities=14%  Similarity=0.182  Sum_probs=47.6

Q ss_pred             cccCCCCCCEEEEeCCCcHHHHHHHHHHHHCC--CcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh--HHHhhC
Q psy2961           4 DYNSLSPGDVVIQNGANSACGQNVIQIARHWG--LKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN--ISRDAS   77 (202)
Q Consensus         4 ~~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g--~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~--~~~~~~   77 (202)
                      +.+++..-+.|++.-.....-..++..++..+  .++++.+.+++    ..+.++.+|++.++++.....  +.+...
T Consensus        65 ~~a~i~~a~~vi~~~~~d~~n~~~~~~~r~~~~~~~iia~~~~~~----~~~~l~~~Gad~vi~p~~~~~~~l~~~l~  138 (153)
T d1id1a_          65 KKAGIDRCRAILALSDNDADNAFVVLSAKDMSSDVKTVLAVSDSK----NLNKIKMVHPDIILSPQLFGSEILARVLN  138 (153)
T ss_dssp             HHHTTTTCSEEEECSSCHHHHHHHHHHHHHHTSSSCEEEECSSGG----GHHHHHTTCCSEEECHHHHHHHHHHHHHT
T ss_pred             HHhccccCCEEEEccccHHHHHHHHHHHHHhCCCCceEEEEcCHH----HHHHHHHCCCCEEECHHHHHHHHHHHHhC
Confidence            34566777777776655556677778888764  36777776665    367888999999998765444  444443

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.91  E-value=0.11  Score=35.69  Aligned_cols=36  Identities=19%  Similarity=0.276  Sum_probs=30.2

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHH-HHCCCcEEEEecCc
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIA-RHWGLKTINIVRNR   45 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la-~~~g~~vi~~~~~~   45 (202)
                      -.|.+|+|.|-| .+|..+++.+ +..|++++++.++.
T Consensus        29 l~g~~vaIqG~G-nVG~~~a~~L~~e~Ga~vv~vsd~~   65 (234)
T d1b26a1          29 PKKATVAVQGFG-NVGQFAALLISQELGSKVVAVSDSR   65 (234)
T ss_dssp             TTTCEEEEECCS-HHHHHHHHHHHHHHCCEEEEEEETT
T ss_pred             cCCCEEEEECCC-HHHHHHHHHHHHhcCCceEEeecCC
Confidence            468899999998 9999999877 57899999887543

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=91.82  E-value=0.039  Score=35.13  Aligned_cols=82  Identities=11%  Similarity=-0.007  Sum_probs=43.4

Q ss_pred             EEeCCCcHHHHHHHHHHHHCCCcEE-EEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecCCCchH
Q psy2961          15 IQNGANSACGQNVIQIARHWGLKTI-NIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGNSA   93 (202)
Q Consensus        15 lI~g~~~~vG~~~i~la~~~g~~vi-~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~g~~~~   93 (202)
                      -+.|+| -+|.+.++.++. +..+. +..++.+    +.+.+.+.+.....+..+.  +      ...|+||=|+.....
T Consensus         3 gfIG~G-~mg~~l~~~L~~-~~~~~~v~~R~~~----~~~~l~~~~~~~~~~~~~~--~------~~~DiVil~v~d~~i   68 (153)
T d2i76a2           3 NFVGTG-TLTRFFLECLKD-RYEIGYILSRSID----RARNLAEVYGGKAATLEKH--P------ELNGVVFVIVPDRYI   68 (153)
T ss_dssp             EEESCC-HHHHHHHHTTC-----CCCEECSSHH----HHHHHHHHTCCCCCSSCCC--C------C---CEEECSCTTTH
T ss_pred             EEEeCc-HHHHHHHHHHHh-CCCEEEEEeCChh----hhcchhhcccccccchhhh--h------ccCcEEEEeccchhh
Confidence            466888 899988876654 44443 3444443    4555555444333222111  1      456899988887777


Q ss_pred             HHHHHhcccCcEE-EEEe
Q psy2961          94 TNLLRTLVSKGVM-VTYG  110 (202)
Q Consensus        94 ~~~~~~l~~~G~~-v~~g  110 (202)
                      ...+.-++..+.+ +.+.
T Consensus        69 ~~v~~~l~~~~~ivi~~s   86 (153)
T d2i76a2          69 KTVANHLNLGDAVLVHCS   86 (153)
T ss_dssp             HHHHTTTCCSSCCEEECC
T ss_pred             hHHHhhhcccceeeeecc
Confidence            7777777644444 4443

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.76  E-value=0.78  Score=27.87  Aligned_cols=62  Identities=19%  Similarity=0.307  Sum_probs=42.3

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCc-EEEEecCcccHHHHHHHHHhcCCceEeChhHHH
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLGADYVFTEEELR   70 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~-vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~   70 (202)
                      .++++.-+.+++.-.....-+.++++++.+|.+ +++.+.+++    ..+.++++|++.+++++...
T Consensus        60 ~~~i~~a~~vv~~t~~d~~N~~~~~~~k~~~~~~iI~~~~~~~----~~~~l~~~G~d~vi~p~~~~  122 (132)
T d1lssa_          60 DAGIEDADMYIAVTGKEEVNLMSSLLAKSYGINKTIARISEIE----YKDVFERLGVDVVVSPELIA  122 (132)
T ss_dssp             HTTTTTCSEEEECCSCHHHHHHHHHHHHHTTCCCEEEECSSTT----HHHHHHHTTCSEEECHHHHH
T ss_pred             hcChhhhhhhcccCCcHHHHHHHHHHHHHcCCceEEEEecCHH----HHHHHHHCCCCEEECHHHHH
Confidence            345666666665544435667788889998874 555555544    46788999999999876543

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=91.75  E-value=0.28  Score=34.43  Aligned_cols=94  Identities=16%  Similarity=0.235  Sum_probs=54.0

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhc-----CC---c--eEeChhHHHh-HHHhhC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL-----GA---D--YVFTEEELRN-ISRDAS   77 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~l-----g~---~--~v~~~~~~~~-~~~~~~   77 (202)
                      ...++|||.|+|+  |..+-.++++.+.+.+.++.-+..   -.+.++++     ++   .  .++ ..|... +++.  
T Consensus        74 ~~p~~vLiiGgG~--G~~~~~~l~~~~~~~i~~VEID~~---Vi~~a~~~~~~~~~~~~d~r~~i~-~~D~~~~l~~~--  145 (274)
T d1iy9a_          74 PNPEHVLVVGGGD--GGVIREILKHPSVKKATLVDIDGK---VIEYSKKFLPSIAGKLDDPRVDVQ-VDDGFMHIAKS--  145 (274)
T ss_dssp             SSCCEEEEESCTT--CHHHHHHTTCTTCSEEEEEESCHH---HHHHHHHHCHHHHTTTTSTTEEEE-ESCSHHHHHTC--
T ss_pred             CCcceEEecCCCC--cHHHHHHHhcCCcceEEEecCCHH---HHHHHHHhChhhcccccCCCeEEE-echHHHHHhhc--
Confidence            3457999999874  666777778777766655555443   23444443     11   0  111 123333 4432  


Q ss_pred             CCCCeEEE-ecCCC---------ch-HHHHHHhcccCcEEEEEe
Q psy2961          78 IPKPKLAL-NCVGG---------NS-ATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        78 ~~~~d~vi-d~~g~---------~~-~~~~~~~l~~~G~~v~~g  110 (202)
                      ...+|+|+ |....         .. +..+.++|+++|.++.-.
T Consensus       146 ~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~  189 (274)
T d1iy9a_         146 ENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT  189 (274)
T ss_dssp             CSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence            35799975 43321         12 233677999999998754

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.70  E-value=0.6  Score=32.78  Aligned_cols=102  Identities=14%  Similarity=0.153  Sum_probs=57.2

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHC-CCcEEEEecCcccHHHHHHHHHhcCCceEeC-hhHHHhHHHhhCCCCCeE
Q psy2961           6 NSLSPGDVVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVFT-EEELRNISRDASIPKPKL   83 (202)
Q Consensus         6 ~~~~~g~~VlI~g~~~~vG~~~i~la~~~-g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~-~~~~~~~~~~~~~~~~d~   83 (202)
                      ..+++|++||=..|+ + |-=+++++... +.++++...++.......+.++.+|...+.. ..+.. .........||.
T Consensus        98 L~~~~g~~vLD~CAa-P-GgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~-~~~~~~~~~fd~  174 (284)
T d1sqga2          98 LAPQNGEHILDLCAA-P-GGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRY-PSQWCGEQQFDR  174 (284)
T ss_dssp             HCCCTTCEEEEESCT-T-CHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTC-THHHHTTCCEEE
T ss_pred             cCccccceeEeccCc-c-ccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccc-cchhcccccccE
Confidence            457899998766554 2 33344555443 3567777777765554556667788864431 11110 111222356887


Q ss_pred             E-Ee--cCCCch--------------------------HHHHHHhcccCcEEEEEe
Q psy2961          84 A-LN--CVGGNS--------------------------ATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        84 v-id--~~g~~~--------------------------~~~~~~~l~~~G~~v~~g  110 (202)
                      | +|  |+|...                          +..+++.+++||++|...
T Consensus       175 IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsT  230 (284)
T d1sqga2         175 ILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYAT  230 (284)
T ss_dssp             EEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             EEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEee
Confidence            6 55  666311                          112455788999888654

>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Haemophilus influenzae [TaxId: 727]

Probab=91.68  E-value=0.36  Score=34.33  Aligned_cols=57  Identities=19%  Similarity=0.260  Sum_probs=42.6

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe
Q psy2961           6 NSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF   64 (202)
Q Consensus         6 ~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~   64 (202)
                      +.+.++++|+...+| ..|.+++..|+..|.+.+++..... ...+.+.++.+|++.+.
T Consensus        56 g~~~~~~~vv~~SsG-N~g~a~A~~a~~~G~~~~i~~p~~~-~~~k~~~~~~~GA~vv~  112 (310)
T d1y7la1          56 GTLTKGKEIVDATSG-NTGIALAYVAAARGYKITLTMPETM-SLERKRLLCGLGVNLVL  112 (310)
T ss_dssp             TSSCTTCEEEESCCS-HHHHHHHHHHHHHTCCEEEEEETTS-CHHHHHHHHHTTCEEEE
T ss_pred             CCCCCCceeeeecCC-CchHHHHHHHHHhhccccccchhhh-hhhhhhhHHHhCCceEe
Confidence            445677776655554 9999999999999998777665443 34578888999987665

>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Escherichia coli [TaxId: 562]

Probab=91.66  E-value=0.62  Score=33.35  Aligned_cols=99  Identities=14%  Similarity=0.209  Sum_probs=63.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeCh---hHHHh----H----------
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE---EELRN----I----------   72 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~---~~~~~----~----------   72 (202)
                      +..+|+. ..+|..|.+++..++..|.+++++..... ..++.+.++.+|++-+...   .+...    .          
T Consensus        74 ~~~~vv~-assGN~g~a~A~~a~~~g~~~~i~~p~~~-~~~k~~~l~~~Ga~vi~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (331)
T d1tdja1          74 KAHGVIT-ASAGNHAQGVAFSSARLGVKALIVMPTAT-ADIKVDAVRGFGGEVLLHGANFDEAKAKAIELSQQQGFTWVP  151 (331)
T ss_dssp             CSSSCEE-EECSSSHHHHHHHHHHTTCCEEEECCSSC-CHHHHHHHHHHSCEEECCCSSHHHHHHHHHHHHHHHCCEECC
T ss_pred             CCCeeee-cccchhHHHHHHhhccccccceeeccccc-hhHHHHHHHhcCCEEEEcCcccccchhhhhhhhhcCCCcccc
Confidence            4445555 44447899999999999999887775543 3557888899998866521   11000    0          


Q ss_pred             ---------------HHhh-CCCCCeEEEecCCCchHHH----HHHhcccCcEEEEEe
Q psy2961          73 ---------------SRDA-SIPKPKLALNCVGGNSATN----LLRTLVSKGVMVTYG  110 (202)
Q Consensus        73 ---------------~~~~-~~~~~d~vid~~g~~~~~~----~~~~l~~~G~~v~~g  110 (202)
                                     .+.. ....+|.+|-++|+--...    .++.+.+..+++.+.
T Consensus       152 ~~~~~~~~~g~~t~~~Ei~~q~~~~D~vv~~~G~GG~~aG~~~~~~~~~~~~~ii~ve  209 (331)
T d1tdja1         152 PFDHPMVIAGQGTLALELLQQDAHLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVE  209 (331)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHCTTCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             ccCChHHhhhhhhHHHHHHHhcCCCCEEEEeCChhHHHHHHHHHHHHhCCCcEEEEec
Confidence                           0000 0246899999888765432    456667788888775

>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Escherichia coli, isoform B (CysM) [TaxId: 562]

Probab=91.64  E-value=0.39  Score=33.77  Aligned_cols=103  Identities=16%  Similarity=0.257  Sum_probs=65.5

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeC--hhH--------------
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT--EEE--------------   68 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~--~~~--------------   68 (202)
                      .+.+.++.+|+. ..+|..|++++..|+.+|.+.++++.... ...+.+.++.+|++-++.  ..+              
T Consensus        54 ~g~~~~~~~vv~-aSsGN~g~a~A~~a~~~G~~~~i~~p~~~-~~~k~~~~~~~GA~v~~v~~~~~~~~a~~~~~~~~~~  131 (292)
T d2bhsa1          54 RGEIKPGDVLIE-ATSGNTGIALAMIAALKGYRMKLLMPDNM-SQERRAAMRAYGAELILVTKEQGMEGARDLALEMANR  131 (292)
T ss_dssp             TTSCCTTSEEEE-ECCSHHHHHHHHHHHHHTCEEEEEEESCC-CHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHHHHH
T ss_pred             hCCcCCCceeee-ecccchhHHHHHHHHhcCcceEeeeccCc-hhhhhHHHHHhCCCcceeecccchHHHHHHHhhcccc
Confidence            344566666555 44459999999999999998777775432 245788899999875431  100              


Q ss_pred             --------------HH-------h-HHHhhCCCCCeEEEecCCCchHHH----HHHhcccCcEEEEEe
Q psy2961          69 --------------LR-------N-ISRDASIPKPKLALNCVGGNSATN----LLRTLVSKGVMVTYG  110 (202)
Q Consensus        69 --------------~~-------~-~~~~~~~~~~d~vid~~g~~~~~~----~~~~l~~~G~~v~~g  110 (202)
                                    +.       . +.+.. +..+|.++-++|+--...    .++...+..+++.+.
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~a~Ei~~q~-~~~~d~vv~~~G~Gg~~~G~~~~~k~~~~~~~i~~Ve  198 (292)
T d2bhsa1         132 GEGKLLDQFNNPDNPYAHYTTTGPEIWQQT-GGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQ  198 (292)
T ss_dssp             TSSEECCTTTCTHHHHHHHHTHHHHHHHHT-TTCCCEEEEECSSSHHHHHHHHHHHTSSSCCEEEEEE
T ss_pred             ccccccCCCchhcchhhHHHHHHHHhHHhc-CCCCCcccccCCCccchhhhhhhhhhccCcceEEEec
Confidence                          00       0 11111 235899998887665433    455667788887765

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=91.62  E-value=0.046  Score=33.74  Aligned_cols=83  Identities=12%  Similarity=0.046  Sum_probs=52.5

Q ss_pred             CEEEEeCCCcHHHHHHHHHH-HHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEecCCC
Q psy2961          12 DVVIQNGANSACGQNVIQIA-RHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGG   90 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la-~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~~g~   90 (202)
                      .+|+|+||| ..|.+++... ...+++++++.+.+..     ..=+....-.|+..+++..+   .. ..+++++-++..
T Consensus         4 ~~v~I~GaG-~~G~~l~~~l~~~~~~~iv~fiDdd~~-----k~G~~I~Gi~V~~~~~l~~~---~~-~~i~iai~~i~~   73 (126)
T d2dt5a2           4 WGLCIVGMG-RLGSALADYPGFGESFELRGFFDVDPE-----KVGRPVRGGVIEHVDLLPQR---VP-GRIEIALLTVPR   73 (126)
T ss_dssp             EEEEEECCS-HHHHHHHHCSCCCSSEEEEEEEESCTT-----TTTCEETTEEEEEGGGHHHH---ST-TTCCEEEECSCH
T ss_pred             ceEEEEcCC-HHHHHHHHhHhhcCCcEEEEEEeCchH-----hcCCEECCEEEecHHHHHHH---Hh-hcccEEEEeCCH
Confidence            489999999 8998776533 2457789988876642     22233444456655555441   11 357888888887


Q ss_pred             chHHHHHHhcccCc
Q psy2961          91 NSATNLLRTLVSKG  104 (202)
Q Consensus        91 ~~~~~~~~~l~~~G  104 (202)
                      ....+..+.+-..|
T Consensus        74 ~~~~~I~d~l~~~g   87 (126)
T d2dt5a2          74 EAAQKAADLLVAAG   87 (126)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcC
Confidence            77766655443333

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=91.52  E-value=0.12  Score=34.55  Aligned_cols=31  Identities=26%  Similarity=0.259  Sum_probs=26.5

Q ss_pred             EEEeCCCcHHHHHHHHHHHHCCCcEEEEecCc
Q psy2961          14 VIQNGANSACGQNVIQIARHWGLKTINIVRNR   45 (202)
Q Consensus        14 VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~   45 (202)
                      |+|.|+| +.|+.++..+..+|.+|+++-..+
T Consensus         6 vvVIGgG-paGl~aA~~aa~~G~kV~vie~~~   36 (221)
T d1dxla1           6 VVIIGGG-PGGYVAAIKAAQLGFKTTCIEKRG   36 (221)
T ss_dssp             EEEECCS-HHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             EEEECCC-HHHHHHHHHHHHCCCcEEEEEecC
Confidence            6777998 999999999999999998886543

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=91.48  E-value=0.12  Score=35.28  Aligned_cols=37  Identities=8%  Similarity=0.039  Sum_probs=29.5

Q ss_pred             CCCEEEEeCC----------------CcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961          10 PGDVVIQNGA----------------NSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus        10 ~g~~VlI~g~----------------~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      .|.+|||++|                +|-+|.++++-|...|++|..+++...
T Consensus         5 ~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g~~~   57 (223)
T d1u7za_           5 KHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVS   57 (223)
T ss_dssp             TTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCC
T ss_pred             CCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhcccc
Confidence            4667777655                457899999999999999999987654

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=91.48  E-value=0.41  Score=28.65  Aligned_cols=35  Identities=14%  Similarity=0.126  Sum_probs=26.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC---cEEEEecCc
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGL---KTINIVRNR   45 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~---~vi~~~~~~   45 (202)
                      ..++++|.|+| .+|.-++..+..+|.   +|..+.+.+
T Consensus        19 ~p~~v~ivGgG-~ig~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          19 PPRRVLTVGGG-FISVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             CCSEEEEECSS-HHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             cCCeEEEECCc-HHHHHHHHHhhhcccCCcEEEEEeccc
Confidence            45799999998 999988877776654   576666544

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=91.46  E-value=0.14  Score=34.99  Aligned_cols=32  Identities=19%  Similarity=0.152  Sum_probs=27.0

Q ss_pred             EEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961          14 VIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus        14 VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      |+|.|+| +.|++++..+...|.+|+.+-..+.
T Consensus         5 ViIIGaG-~aGl~aA~~la~~G~~V~liEk~~~   36 (251)
T d2i0za1           5 VIVIGGG-PSGLMAAIGAAEEGANVLLLDKGNK   36 (251)
T ss_dssp             EEEECCS-HHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             EEEECcC-HHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            6788999 9999988888889999998876543

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.39  E-value=0.0075  Score=39.59  Aligned_cols=97  Identities=10%  Similarity=0.101  Sum_probs=59.4

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHh----cCCceEeChhH-HHh-HHHhhCCCCCe
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS----LGADYVFTEEE-LRN-ISRDASIPKPK   82 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~----lg~~~v~~~~~-~~~-~~~~~~~~~~d   82 (202)
                      -.|.+|+|.|-+.-+|.=++.++...|+.|..+......     .+-+.    .-...+-+... ..+ +++..  ...|
T Consensus        27 l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~--~~aD   99 (171)
T d1edza1          27 LYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQ-----KFTRGESLKLNKHHVEDLGEYSEDLLKKCS--LDSD   99 (171)
T ss_dssp             TTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEE-----EEESCCCSSCCCCEEEEEEECCHHHHHHHH--HHCS
T ss_pred             CCCCEEEEECCccccHHHHHHHHHHCCCEEEEecccccc-----ccccccceeeeeeccccccccchhHHhhcc--ccCC
Confidence            478999999999999998888888899987654432210     00000    00111111000 011 23322  3469


Q ss_pred             EEEecCCCchHHHHHHhcccCcEEEEEecc
Q psy2961          83 LALNCVGGNSATNLLRTLVSKGVMVTYGGM  112 (202)
Q Consensus        83 ~vid~~g~~~~~~~~~~l~~~G~~v~~g~~  112 (202)
                      +++-++|.+.+.---+++++|..++.+|..
T Consensus       100 IvIsavG~p~~~i~~d~ik~GavvIDvGi~  129 (171)
T d1edza1         100 VVITGVPSENYKFPTEYIKEGAVCINFACT  129 (171)
T ss_dssp             EEEECCCCTTCCBCTTTSCTTEEEEECSSS
T ss_pred             EEEEccCCCccccChhhcccCceEeecccc
Confidence            999999988753345678999999999843

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=91.38  E-value=0.14  Score=35.22  Aligned_cols=32  Identities=19%  Similarity=0.110  Sum_probs=27.5

Q ss_pred             EEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961          14 VIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus        14 VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      |+|.|+| +.|++++..+...|.+|..+-..+.
T Consensus         7 ViIIGaG-~aGl~aA~~la~~G~~V~vlEk~~~   38 (253)
T d2gqfa1           7 NIIIGAG-AAGLFCAAQLAKLGKSVTVFDNGKK   38 (253)
T ss_dssp             EEEECCS-HHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             EEEECcC-HHHHHHHHHHHHCCCcEEEEecCCC
Confidence            7788999 9999999888889999988876654

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=91.36  E-value=0.79  Score=30.42  Aligned_cols=97  Identities=10%  Similarity=0.039  Sum_probs=58.0

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHC-CCcEEEEecCcccHHHHHHHHHhcCCceEeC-hhHHHhHHHhhCCCCCeEEEecCC
Q psy2961          12 DVVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVFT-EEELRNISRDASIPKPKLALNCVG   89 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~-g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~-~~~~~~~~~~~~~~~~d~vid~~g   89 (202)
                      ..||=.|+|  .|..++.+|+.. ...++++--+........+.+++.+...+.- ..|...+........+|.|+-...
T Consensus        33 plvLdIGcG--~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP  110 (204)
T d1yzha1          33 PIHVEVGSG--KGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS  110 (204)
T ss_dssp             CEEEEESCT--TSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred             CeEEEEecc--CCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccc
Confidence            356666775  699999999987 5677777766554333345556666553321 112111223334456787766555


Q ss_pred             Cc--------------h-HHHHHHhcccCcEEEEEe
Q psy2961          90 GN--------------S-ATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        90 ~~--------------~-~~~~~~~l~~~G~~v~~g  110 (202)
                      .+              . +..+.+.|+|||.+....
T Consensus       111 dPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T  146 (204)
T d1yzha1         111 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT  146 (204)
T ss_dssp             CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred             ccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            33              2 233678999999997643

>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.31  E-value=0.32  Score=34.85  Aligned_cols=59  Identities=19%  Similarity=0.250  Sum_probs=44.1

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF   64 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~   64 (202)
                      .+.++++...+|...+|..|.+++..++.+|.+.+++..... ...+.+.++.+|++.+.
T Consensus        58 ~g~~~~~~~~vv~aSsGN~g~a~A~~a~~~g~~~~iv~p~~~-~~~k~~~i~~~Ga~vi~  116 (320)
T d1z7wa1          58 KGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASM-STERRIILLAFGVELVL  116 (320)
T ss_dssp             TTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTS-CHHHHHHHHHTTCEEEE
T ss_pred             cCCCCCCCceEEeeCCchHHHHHHHHHHhhccceEEeehhhh-hhhhhhhhhccCcceEE
Confidence            345566666667777779999999999999998776664432 34578889999987554

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=91.14  E-value=0.19  Score=36.00  Aligned_cols=34  Identities=15%  Similarity=0.095  Sum_probs=29.0

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCc
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR   45 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~   45 (202)
                      ..+|+|.||| ..|+.++..+...|.+|.++-.++
T Consensus         2 ~KKI~IIGaG-~sGL~aA~~L~k~G~~V~viEk~~   35 (314)
T d2bi7a1           2 SKKILIVGAG-FSGAVIGRQLAEKGHQVHIIDQRD   35 (314)
T ss_dssp             CCEEEEECCS-HHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCEEEEECCc-HHHHHHHHHHHhCCCCEEEEECCC
Confidence            4689999999 999999999888899988776554

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.12  E-value=0.18  Score=34.75  Aligned_cols=31  Identities=16%  Similarity=0.192  Sum_probs=25.3

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecC
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGL-KTINIVRN   44 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~   44 (202)
                      .|+|.||| ..|++++.+++..|. +|.++-++
T Consensus         3 ~V~IvGaG-~aGl~~A~~L~~~Gi~~V~V~Er~   34 (288)
T d3c96a1           3 DILIAGAG-IGGLSCALALHQAGIGKVTLLESS   34 (288)
T ss_dssp             EEEEECCS-HHHHHHHHHHHHTTCSEEEEEESS
T ss_pred             EEEEECcC-HHHHHHHHHHHhCCCCeEEEEeCC
Confidence            68999999 999999999999997 55555443

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=91.11  E-value=0.079  Score=34.83  Aligned_cols=34  Identities=15%  Similarity=0.135  Sum_probs=28.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRN   44 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~   44 (202)
                      ++..|+|.|+| +.|+.++..+...|.+|+.+-+.
T Consensus         4 k~~dVvIIGGG-paGl~AA~~~ar~g~~v~iie~~   37 (190)
T d1trba1           4 KHSKLLILGSG-PAGYTAAVYAARANLQPVLITGM   37 (190)
T ss_dssp             EEEEEEEECCS-HHHHHHHHHHHTTTCCCEEECCS
T ss_pred             CCCcEEEECCC-HHHHHHHHHHHHcCCceEEEEee
Confidence            34579999999 99999999999999998888643

>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=91.01  E-value=0.5  Score=34.81  Aligned_cols=56  Identities=20%  Similarity=0.289  Sum_probs=42.3

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe
Q psy2961           7 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF   64 (202)
Q Consensus         7 ~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~   64 (202)
                      ++++|.+| |...+|..|.+++..|+.+|.+.++++.... ..++.+.++.+|++-+.
T Consensus       140 ~~~~g~~V-VeaSSGN~GiAlA~~aa~lGik~~Iv~P~~~-~~~K~~~ira~GAeVi~  195 (382)
T d1wkva1         140 RVEKGSLV-ADATSSNFGVALSAVARLYGYRARVYLPGAA-EEFGKLLPRLLGAQVIV  195 (382)
T ss_dssp             TSCTTCEE-EEECCHHHHHHHHHHHHHTTCEEEEEEETTS-CHHHHHHHHHTTCEEEE
T ss_pred             ccCCCCEE-EEeCCcHHHHHHHHHHHHcCCCEEEEeeccc-cccccccccccCcceee
Confidence            46777765 4555668999999999999998877775433 34578888999987654

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=91.00  E-value=0.39  Score=34.76  Aligned_cols=103  Identities=10%  Similarity=0.065  Sum_probs=58.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHH-HHHHCCCcEEEEecCcccHHHHHHHHHhc----CCceEeChhHHHhHHHhhCCCCCeEE
Q psy2961          10 PGDVVIQNGANSACGQNVIQ-IARHWGLKTINIVRNRDDIDKLKSYLKSL----GADYVFTEEELRNISRDASIPKPKLA   84 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~-la~~~g~~vi~~~~~~~~~~~~~~~~~~l----g~~~v~~~~~~~~~~~~~~~~~~d~v   84 (202)
                      ...++.|+|+| ..+..-++ +....+.+.+.+.+.....  ....++++    |.+... ..+.++   ..  .+.|+|
T Consensus       127 da~~l~iiG~G-~QA~~~~~a~~~v~~i~~V~v~~r~~~~--~~~~~~~l~~~~g~~v~~-~~s~~e---av--~~ADIi  197 (340)
T d1x7da_         127 NARKMALIGNG-AQSEFQALAFHKHLGIEEIVAYDTDPLA--TAKLIANLKEYSGLTIRR-ASSVAE---AV--KGVDII  197 (340)
T ss_dssp             TCCEEEEECCS-TTHHHHHHHHHHHSCCCEEEEECSSHHH--HHHHHHHHTTCTTCEEEE-CSSHHH---HH--TTCSEE
T ss_pred             CCceEEEEccc-HHHHHHHHHHhhhcceeeeEEEecChHH--HHHHHHhhhhccCCCcee-cCCHHH---HH--hcCCce
Confidence            34688999999 67766555 4456677666665554321  22233333    333222 223332   12  567999


Q ss_pred             EecCCCchHHH--HHHhcccCcEEEEEeccCCCCcCCCc
Q psy2961          85 LNCVGGNSATN--LLRTLVSKGVMVTYGGMSREPVQIPT  121 (202)
Q Consensus        85 id~~g~~~~~~--~~~~l~~~G~~v~~g~~~~~~~~~~~  121 (202)
                      +-|+..+....  -..+++||-++..+|........++.
T Consensus       198 ~t~Tas~s~~Pv~~~~~l~pG~hI~aiGs~~p~~~Eld~  236 (340)
T d1x7da_         198 TTVTADKAYATIITPDMLEPGMHLNAVGGDCPGKTELHA  236 (340)
T ss_dssp             EECCCCSSEEEEECGGGCCTTCEEEECSCCBTTBEEECH
T ss_pred             eeccccCCCCcccchhhcCCCCEEeecccchhhhhccCH
Confidence            88775442111  24689999999999866554334443

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=90.93  E-value=0.17  Score=34.80  Aligned_cols=34  Identities=15%  Similarity=0.160  Sum_probs=29.9

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCc
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR   45 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~   45 (202)
                      ..+|+|.|+| ++|..+++.+...|...+.+++.+
T Consensus        30 ~~~VliiG~G-glGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          30 DSRVLIVGLG-GLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HCEEEEECCS-HHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             CCCEEEECCC-HHHHHHHHHHHHcCCCeEEEECCc
Confidence            4699999999 899999999999999888887643

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=90.80  E-value=0.13  Score=34.82  Aligned_cols=95  Identities=6%  Similarity=-0.072  Sum_probs=54.6

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe-ChhHHHhHHHhhCCCCCeEE
Q psy2961           6 NSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLA   84 (202)
Q Consensus         6 ~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~-~~~~~~~~~~~~~~~~~d~v   84 (202)
                      .+..++.+||=.|+|  .|..+..+++ .|.+|+++.-+++    ..+.+++...+.+- ...++.+   ......+|+|
T Consensus        16 ~~~~~~~~VLDiGcG--~G~~~~~l~~-~g~~v~giD~s~~----~i~~a~~~~~~~~~~~~~~~~~---~~~~~~fD~I   85 (225)
T d2p7ia1          16 TPFFRPGNLLELGSF--KGDFTSRLQE-HFNDITCVEASEE----AISHAQGRLKDGITYIHSRFED---AQLPRRYDNI   85 (225)
T ss_dssp             GGGCCSSCEEEESCT--TSHHHHHHTT-TCSCEEEEESCHH----HHHHHHHHSCSCEEEEESCGGG---CCCSSCEEEE
T ss_pred             hhhCCCCcEEEEeCC--CcHHHHHHHH-cCCeEEEEeCcHH----Hhhhhhcccccccccccccccc---cccccccccc
Confidence            344567789999987  4777666654 5788888876665    45666543222111 1112111   1123578998


Q ss_pred             EecCCCch-------HHHHH-HhcccCcEEEEEe
Q psy2961          85 LNCVGGNS-------ATNLL-RTLVSKGVMVTYG  110 (202)
Q Consensus        85 id~~g~~~-------~~~~~-~~l~~~G~~v~~g  110 (202)
                      +..---.+       +..+. ++|+|||.++..-
T Consensus        86 ~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~~  119 (225)
T d2p7ia1          86 VLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVC  119 (225)
T ss_dssp             EEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             cccceeEecCCHHHHHHHHHHHhcCCCceEEEEe
Confidence            75332111       12344 5789999998753

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.80  E-value=0.35  Score=30.62  Aligned_cols=35  Identities=23%  Similarity=0.233  Sum_probs=27.5

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEE-EEecC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTI-NIVRN   44 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi-~~~~~   44 (202)
                      ..+++|+|.|+| .+|.=.+..+..+|++.+ .+.++
T Consensus        43 ~~~~kVvVIGGG-dtA~D~A~~a~r~GA~~V~vi~rr   78 (153)
T d1gtea3          43 SIRGAVIVLGAG-DTAFDCATSALRCGARRVFLVFRK   78 (153)
T ss_dssp             CCCSEEEEECSS-HHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             cCCCEEEEECCC-hhHHHHHHHHHHcCCcceeEEEeC
Confidence            356789999998 899988888889999754 55544

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.74  E-value=0.5  Score=33.11  Aligned_cols=92  Identities=16%  Similarity=0.109  Sum_probs=49.7

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcC-C------------c---eEeChhHHHh-
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG-A------------D---YVFTEEELRN-   71 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg-~------------~---~v~~~~~~~~-   71 (202)
                      ....+|||.|+|+  |..+-.++++-..++. ++.-+..   -.+.++++- .            +   .++ ..|... 
T Consensus        71 ~~p~~vLiiG~G~--G~~~~~~l~~~~~~v~-~VEiD~~---Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~-~~Da~~~  143 (276)
T d1mjfa_          71 PKPKRVLVIGGGD--GGTVREVLQHDVDEVI-MVEIDED---VIMVSKDLIKIDNGLLEAMLNGKHEKAKLT-IGDGFEF  143 (276)
T ss_dssp             SCCCEEEEEECTT--SHHHHHHTTSCCSEEE-EEESCHH---HHHHHHHHTCTTTTHHHHHHTTCCSSEEEE-ESCHHHH
T ss_pred             CCCceEEEecCCc--hHHHHHHHHhCCceEE-EecCCHH---HHHHHHHhhhhccchhhhhhccCCCCceEE-EChHHHH
Confidence            3457999999985  4444555554333444 4444432   245554421 1            1   122 133344 


Q ss_pred             HHHhhCCCCCeEEE-ecCCCc---------h-HHHHHHhcccCcEEEEEe
Q psy2961          72 ISRDASIPKPKLAL-NCVGGN---------S-ATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        72 ~~~~~~~~~~d~vi-d~~g~~---------~-~~~~~~~l~~~G~~v~~g  110 (202)
                      +++   ...+|+|| |+....         . +..+.++|+++|.++.-+
T Consensus       144 l~~---~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~  190 (276)
T d1mjfa_         144 IKN---NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA  190 (276)
T ss_dssp             HHH---CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             Hhc---cCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence            543   26799975 444321         1 223678999999988744

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=90.65  E-value=1.2  Score=27.82  Aligned_cols=34  Identities=15%  Similarity=0.176  Sum_probs=26.3

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcc
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGL-KTINIVRNRD   46 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~   46 (202)
                      +|.|.|++|.+|..++.++...+. .-++..+.++
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~   36 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence            588999877999999999988884 5566665443

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=90.42  E-value=0.13  Score=37.14  Aligned_cols=30  Identities=13%  Similarity=0.116  Sum_probs=25.0

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEE
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINI   41 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~   41 (202)
                      .+|||+||+|-+|..++..+...|..|.++
T Consensus         3 mkILVTGgtGfIGs~lv~~L~~~g~~v~v~   32 (346)
T d1oc2a_           3 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVT   32 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCCeEEE
Confidence            579999999999999998888778765444

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.42  E-value=0.27  Score=33.79  Aligned_cols=36  Identities=17%  Similarity=0.412  Sum_probs=30.6

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHH-HCCCcEEEEecCc
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIAR-HWGLKTINIVRNR   45 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~-~~g~~vi~~~~~~   45 (202)
                      -.|.+|+|.|-| .+|..+++++. ..|++++++.++.
T Consensus        30 l~g~~v~IqGfG-nVG~~~a~~L~~~~G~kvv~vsD~~   66 (239)
T d1gtma1          30 LKGKTIAIQGYG-NAGYYLAKIMSEDFGMKVVAVSDSK   66 (239)
T ss_dssp             STTCEEEEECCS-HHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred             cCCCEEEEECCC-HHHHHHHHHHHHhcCcceeeccccc
Confidence            478999999998 89999998764 6799999988764

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.30  E-value=0.24  Score=35.01  Aligned_cols=35  Identities=14%  Similarity=0.211  Sum_probs=28.8

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecC
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRN   44 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~   44 (202)
                      ++..+|+|.|+| ..|+.++..+...|.+|.+.-.+
T Consensus         3 ~~~~kViVIGaG-~aGL~aA~~L~~~G~~V~VlEa~   37 (449)
T d2dw4a2           3 KKTGKVIIIGSG-VSGLAAARQLQSFGMDVTLLEAR   37 (449)
T ss_dssp             SCCCEEEEECCB-HHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCCcEEEECCC-HHHHHHHHHHHhCCCCEEEEeCC
Confidence            345679999999 99999999999999987776443

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=90.27  E-value=0.56  Score=33.50  Aligned_cols=94  Identities=17%  Similarity=0.207  Sum_probs=51.9

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhc------CC---c--eEeChhHHHh-HHHhh
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL------GA---D--YVFTEEELRN-ISRDA   76 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~l------g~---~--~v~~~~~~~~-~~~~~   76 (202)
                      ...++|||.|+|+  |..+-.++++.....+.++.-+..   -.+.++++      ++   .  .++ ..|..+ +++. 
T Consensus        76 ~~pk~VLiiG~G~--G~~~~~ll~~~~~~~v~~VEiD~~---Vi~~a~~~f~~~~~~~~~d~rv~i~-~~Da~~~l~~~-  148 (312)
T d1uira_          76 PEPKRVLIVGGGE--GATLREVLKHPTVEKAVMVDIDGE---LVEVAKRHMPEWHQGAFDDPRAVLV-IDDARAYLERT-  148 (312)
T ss_dssp             SCCCEEEEEECTT--SHHHHHHTTSTTCCEEEEEESCHH---HHHHHHHHCHHHHTTGGGCTTEEEE-ESCHHHHHHHC-
T ss_pred             CCcceEEEeCCCc--hHHHHHHHhcCCcceEEEecCCHH---HHHHHHhcCcccccCccCCCceEEE-EchHHHHhhhc-
Confidence            3457999999974  666677777766544444444432   23444432      10   0  111 234444 5442 


Q ss_pred             CCCCCeEEE-ecC---CC--c-------hH-HHHHHhcccCcEEEEEe
Q psy2961          77 SIPKPKLAL-NCV---GG--N-------SA-TNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        77 ~~~~~d~vi-d~~---g~--~-------~~-~~~~~~l~~~G~~v~~g  110 (202)
                       +..+|+|| |..   +.  +       .+ ..+.+.|+++|.++.-.
T Consensus       149 -~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~  195 (312)
T d1uira_         149 -EERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (312)
T ss_dssp             -CCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             -CCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence             35799975 432   21  1       12 23568999999988643

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.99  E-value=0.25  Score=33.11  Aligned_cols=31  Identities=19%  Similarity=0.248  Sum_probs=26.4

Q ss_pred             EEEeCCCcHHHHHHHHHHHHCCCcEEEEecCc
Q psy2961          14 VIQNGANSACGQNVIQIARHWGLKTINIVRNR   45 (202)
Q Consensus        14 VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~   45 (202)
                      |+|.|+| +.|+.++..|...|.+|..+...+
T Consensus         8 viVIG~G-pAGl~aA~~aa~~G~kV~lie~~~   38 (233)
T d1v59a1           8 VVIIGGG-PAGYVAAIKAAQLGFNTACVEKRG   38 (233)
T ss_dssp             EEEECCS-HHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCC-HHHHHHHHHHHHCCCcEEEEEecC
Confidence            6788998 999998888888999999887654

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=89.87  E-value=0.17  Score=33.92  Aligned_cols=29  Identities=17%  Similarity=0.196  Sum_probs=25.6

Q ss_pred             EEEeCCCcHHHHHHHHHHHHCCCcEEEEec
Q psy2961          14 VIQNGANSACGQNVIQIARHWGLKTINIVR   43 (202)
Q Consensus        14 VlI~g~~~~vG~~~i~la~~~g~~vi~~~~   43 (202)
                      ++|.|+| +.|+.++..|..+|.+|..+-.
T Consensus         8 lvVIG~G-paGl~aA~~aa~~G~~V~liE~   36 (220)
T d1lvla1           8 LLIIGGG-PGGYVAAIRAGQLGIPTVLVEG   36 (220)
T ss_dssp             EEEECCS-HHHHHHHHHHHHHTCCEEEECS
T ss_pred             EEEECCC-HHHHHHHHHHHHCCCcEEEEec
Confidence            6788988 9999999999999999888754

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=89.85  E-value=0.23  Score=33.02  Aligned_cols=29  Identities=28%  Similarity=0.257  Sum_probs=25.5

Q ss_pred             EEEeCCCcHHHHHHHHHHHHCCCcEEEEec
Q psy2961          14 VIQNGANSACGQNVIQIARHWGLKTINIVR   43 (202)
Q Consensus        14 VlI~g~~~~vG~~~i~la~~~g~~vi~~~~   43 (202)
                      |+|.|+| +.|+.++..|..+|.+|..+-.
T Consensus         5 vvVIG~G-~aG~~aA~~a~~~G~kV~iiE~   33 (217)
T d1gesa1           5 YIAIGGG-SGGIASINRAAMYGQKCALIEA   33 (217)
T ss_dssp             EEEECCS-HHHHHHHHHHHTTTCCEEEEES
T ss_pred             EEEECCC-HHHHHHHHHHHHCCCEEEEEec
Confidence            6788998 9999999999999999888754

>d1zn7a1 c.61.1.1 (A:3-180) Adenine PRTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PRTase-like
superfamily: PRTase-like
family: Phosphoribosyltransferases (PRTases)
domain: Adenine PRTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.78  E-value=0.39  Score=31.29  Aligned_cols=37  Identities=16%  Similarity=0.271  Sum_probs=30.3

Q ss_pred             cCCCCCCEEEEeC---CCcHHHHHHHHHHHHCCCcEEEEe
Q psy2961           6 NSLSPGDVVIQNG---ANSACGQNVIQIARHWGLKTINIV   42 (202)
Q Consensus         6 ~~~~~g~~VlI~g---~~~~vG~~~i~la~~~g~~vi~~~   42 (202)
                      ..+.+|++|||.-   ++|+.-.+++++++..|++|+.+.
T Consensus       113 ~~i~~g~rVlIVDDviaTGgT~~a~~~ll~~~Ga~vvg~~  152 (178)
T d1zn7a1         113 DALEPGQRVVVVDDLLATGGTMNAACELLGRLQAEVLECV  152 (178)
T ss_dssp             TSSCTTCEEEEEEEEESSSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CcccCCCeEEEehhhhhhchHHHHHHHHHHHCCCEEEEEE
Confidence            4578999999884   666888999999999999986544

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.64  E-value=0.22  Score=33.17  Aligned_cols=29  Identities=21%  Similarity=0.180  Sum_probs=24.9

Q ss_pred             EEEeCCCcHHHHHHHHHHHHCCCcEEEEec
Q psy2961          14 VIQNGANSACGQNVIQIARHWGLKTINIVR   43 (202)
Q Consensus        14 VlI~g~~~~vG~~~i~la~~~g~~vi~~~~   43 (202)
                      |+|.|+| +.|+.++..|...|.+|..+-+
T Consensus         6 viVIG~G-paGl~aA~~aar~G~kV~vIEk   34 (223)
T d1ebda1           6 TLVVGAG-PGGYVAAIRAAQLGQKVTIVEK   34 (223)
T ss_dssp             EEEECCS-HHHHHHHHHHHHTTCCEEEEES
T ss_pred             EEEECCC-HHHHHHHHHHHHCCCEEEEEec
Confidence            5677988 9999999999999999888854

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.38  E-value=0.26  Score=33.05  Aligned_cols=31  Identities=19%  Similarity=0.134  Sum_probs=26.0

Q ss_pred             EEEeCCCcHHHHHHHHHHHHCCCcEEEEecCc
Q psy2961          14 VIQNGANSACGQNVIQIARHWGLKTINIVRNR   45 (202)
Q Consensus        14 VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~   45 (202)
                      |+|.|+| ..|+.++..+...|.+|.++-+++
T Consensus         8 viViGaG-~~Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           8 VIVLGTG-ITECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             EEEECCS-HHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECcC-HHHHHHHHHHHHCCCCEEEEcCCC
Confidence            6788998 999998888888999988877654

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=89.28  E-value=0.58  Score=33.11  Aligned_cols=93  Identities=9%  Similarity=0.075  Sum_probs=51.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCC---------c-eEeChhHHHh-HHHhhCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA---------D-YVFTEEELRN-ISRDASI   78 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~---------~-~v~~~~~~~~-~~~~~~~   78 (202)
                      ...+|||.|+|+  |..+-.++++.+.+.+.++.-+..   -.+.++++-.         . .++ ..|..+ +++.  .
T Consensus        89 ~pk~VLiiGgG~--G~~~r~~l~~~~~~~i~~VEIDp~---Vi~~a~~~~~~~~~~~~d~rv~v~-~~Da~~~l~~~--~  160 (295)
T d1inla_          89 NPKKVLIIGGGD--GGTLREVLKHDSVEKAILCEVDGL---VIEAARKYLKQTSCGFDDPRAEIV-IANGAEYVRKF--K  160 (295)
T ss_dssp             SCCEEEEEECTT--CHHHHHHTTSTTCSEEEEEESCHH---HHHHHHHHCHHHHGGGGCTTEEEE-ESCHHHHGGGC--S
T ss_pred             CCceEEEecCCc--hHHHHHHHhcCCCceEEEecCCHH---HHHHHHHHHHhhcccccCCCcEEE-hhhHHHHHhcC--C
Confidence            347999999985  455667777777655555544432   2444444211         1 111 133344 5432  2


Q ss_pred             CCCeEEE-ecCC---Cc-------hH-HHHHHhcccCcEEEEEe
Q psy2961          79 PKPKLAL-NCVG---GN-------SA-TNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        79 ~~~d~vi-d~~g---~~-------~~-~~~~~~l~~~G~~v~~g  110 (202)
                      ..+|+|| |+..   ++       .+ ..+.+.|+++|.++.-.
T Consensus       161 ~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~  204 (295)
T d1inla_         161 NEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET  204 (295)
T ss_dssp             SCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEec
Confidence            5699975 4332   11       12 23567999999998754

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=89.24  E-value=0.21  Score=34.64  Aligned_cols=31  Identities=19%  Similarity=0.213  Sum_probs=26.7

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecC
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRN   44 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~   44 (202)
                      +|+|.|+| ..|+.++..+...|.+|+++-.+
T Consensus         2 ~V~IIGaG-~aGL~aA~~L~~~G~~V~vlE~~   32 (347)
T d2ivda1           2 NVAVVGGG-ISGLAVAHHLRSRGTDAVLLESS   32 (347)
T ss_dssp             CEEEECCB-HHHHHHHHHHHTTTCCEEEECSS
T ss_pred             eEEEECCC-HHHHHHHHHHHhCCCCEEEEecC
Confidence            58899998 99999999999999998877544

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.24  E-value=0.22  Score=32.66  Aligned_cols=31  Identities=13%  Similarity=0.063  Sum_probs=26.4

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCcEEEEec
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGLKTINIVR   43 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~   43 (202)
                      ..|+|.|+| +.|+.++-.+...|.+++.+-.
T Consensus         6 ~~VvIIGgG-paGl~aA~~~ar~g~~v~vie~   36 (192)
T d1vdca1           6 TRLCIVGSG-PAAHTAAIYAARAELKPLLFEG   36 (192)
T ss_dssp             EEEEEECCS-HHHHHHHHHHHHTTCCCEEECC
T ss_pred             ceEEEECCC-HHHHHHHHHHHHcCCcEEEEEe
Confidence            478999999 9999988888889999887753

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=89.18  E-value=0.24  Score=33.58  Aligned_cols=31  Identities=19%  Similarity=0.209  Sum_probs=25.0

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecC
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGL-KTINIVRN   44 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~   44 (202)
                      .|+|.||| ..|+.++..++..|. +|+++-.+
T Consensus         2 ~V~IIGaG-~aGL~aA~~L~~~G~~~V~vlE~~   33 (347)
T d1b5qa1           2 RVIVVGAG-MSGISAAKRLSEAGITDLLILEAT   33 (347)
T ss_dssp             CEEEECCB-HHHHHHHHHHHHTTCCCEEEECSS
T ss_pred             CEEEECCc-HHHHHHHHHHHhCCCCcEEEEECC
Confidence            48899999 999999988888997 47665443

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=89.14  E-value=0.47  Score=28.28  Aligned_cols=36  Identities=11%  Similarity=-0.002  Sum_probs=27.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC---CCcEEEEecCcc
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHW---GLKTINIVRNRD   46 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~---g~~vi~~~~~~~   46 (202)
                      ..++++|.|+| .+|.-+++++..+   |.+|..+.+.+.
T Consensus        17 ~p~~v~IiGgG-~ig~E~A~~l~~~~~~g~~Vtli~~~~~   55 (117)
T d1feca2          17 APKRALCVGGG-YISIEFAGIFNAYKARGGQVDLAYRGDM   55 (117)
T ss_dssp             CCSEEEEECSS-HHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred             cCCeEEEECCC-hHHHHHHHHhHhhcccccccceeccccc
Confidence            34799999999 9999888765543   778887776553

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=89.13  E-value=1.5  Score=27.39  Aligned_cols=37  Identities=11%  Similarity=0.180  Sum_probs=28.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCccc
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD   47 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~   47 (202)
                      |..+|.|.|+| .+|...+.++...+..-++..+..++
T Consensus         2 p~~KI~IIGaG-~VG~~~a~~l~~~~l~el~L~Di~~~   38 (150)
T d1t2da1           2 PKAKIVLVGSG-MIGGVMATLIVQKNLGDVVLFDIVKN   38 (150)
T ss_dssp             CCCEEEEECCS-HHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCCeEEEECCC-HHHHHHHHHHHhCCCCeEEEEeccCC
Confidence            56789999985 99999888888888766777765543

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=88.89  E-value=0.28  Score=34.59  Aligned_cols=30  Identities=27%  Similarity=0.302  Sum_probs=26.0

Q ss_pred             EEEeCCCcHHHHHHHHHHHHCCCcEEEEecC
Q psy2961          14 VIQNGANSACGQNVIQIARHWGLKTINIVRN   44 (202)
Q Consensus        14 VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~   44 (202)
                      |+|.|+| ..|+.++.-|...|++|+.+...
T Consensus        19 VlVIG~G-~aGl~aA~~la~~G~~V~lvEK~   48 (308)
T d1y0pa2          19 VVVVGSG-GAGFSAAISATDSGAKVILIEKE   48 (308)
T ss_dssp             EEEECCS-HHHHHHHHHHHHTTCCEEEECSS
T ss_pred             EEEECcC-HHHHHHHHHHHHCCCcEEEEecC
Confidence            7888999 99999998888999999887643

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=88.72  E-value=0.35  Score=32.54  Aligned_cols=31  Identities=26%  Similarity=0.268  Sum_probs=26.7

Q ss_pred             EEEeCCCcHHHHHHHHHHHHCCCcEEEEecCc
Q psy2961          14 VIQNGANSACGQNVIQIARHWGLKTINIVRNR   45 (202)
Q Consensus        14 VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~   45 (202)
                      |+|.|+| +.|+.++..+...|.+|..+-..+
T Consensus         9 viIIG~G-PaGlsaA~~aa~~G~~V~viE~~~   39 (229)
T d1ojta1           9 VVVLGGG-PGGYSAAFAAADEGLKVAIVERYK   39 (229)
T ss_dssp             EEEECCS-HHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECcC-HHHHHHHHHHHHCCCeEEEEeccC
Confidence            6788998 999999999999999998886544

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=88.68  E-value=0.42  Score=32.95  Aligned_cols=94  Identities=10%  Similarity=-0.070  Sum_probs=56.8

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhc-CCceEeC--hhHHHhHHHh-hCCCCCeE
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL-GADYVFT--EEELRNISRD-ASIPKPKL   83 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~l-g~~~v~~--~~~~~~~~~~-~~~~~~d~   83 (202)
                      ..++.+||=+|+|  .|..+.+++...+.+|.++-.+++    ..+.+++. .....++  ..+   +.+. .....+|+
T Consensus        91 ~~~~~~vLD~GcG--~G~~t~~ll~~~~~~v~~vD~s~~----~l~~a~~~~~~~~~~~~~~~d---~~~~~~~~~~fD~  161 (254)
T d1xtpa_          91 GHGTSRALDCGAG--IGRITKNLLTKLYATTDLLEPVKH----MLEEAKRELAGMPVGKFILAS---METATLPPNTYDL  161 (254)
T ss_dssp             TCCCSEEEEETCT--TTHHHHHTHHHHCSEEEEEESCHH----HHHHHHHHTTTSSEEEEEESC---GGGCCCCSSCEEE
T ss_pred             CCCCCeEEEeccc--CChhhHHHHhhcCceEEEEcCCHH----HHHhhhccccccccceeEEcc---ccccccCCCccce
Confidence            3567788888886  688888888776667777766654    45666543 2211121  112   2221 12356999


Q ss_pred             EEecCCCch---------HHHHHHhcccCcEEEEEe
Q psy2961          84 ALNCVGGNS---------ATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        84 vid~~g~~~---------~~~~~~~l~~~G~~v~~g  110 (202)
                      |+..-.-.+         +..+.+.|+++|.++..-
T Consensus       162 I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e  197 (254)
T d1xtpa_         162 IVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKE  197 (254)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEe
Confidence            876443221         223667899999998754

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.61  E-value=0.27  Score=34.82  Aligned_cols=32  Identities=16%  Similarity=0.130  Sum_probs=27.2

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCc
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRNR   45 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~   45 (202)
                      -|+|.||| ..|+.++..+...|.+|.++-.++
T Consensus         3 dv~IIGaG-~sGl~~A~~L~~~g~~V~iiEk~~   34 (298)
T d1i8ta1           3 DYIIVGSG-LFGAVCANELKKLNKKVLVIEKRN   34 (298)
T ss_dssp             EEEEECCS-HHHHHHHHHHGGGTCCEEEECSSS
T ss_pred             cEEEECCc-HHHHHHHHHHHhCCCcEEEEECCC
Confidence            37899999 999999999988899988876554

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.56  E-value=0.29  Score=32.56  Aligned_cols=29  Identities=14%  Similarity=0.165  Sum_probs=25.1

Q ss_pred             EEEeCCCcHHHHHHHHHHHHCCCcEEEEec
Q psy2961          14 VIQNGANSACGQNVIQIARHWGLKTINIVR   43 (202)
Q Consensus        14 VlI~g~~~~vG~~~i~la~~~g~~vi~~~~   43 (202)
                      |+|.|+| +.|+.++..|...|.+|..+-.
T Consensus         6 viIIG~G-paG~~aA~~aar~G~kV~vIEk   34 (221)
T d3grsa1           6 YLVIGGG-SGGLASARRAAELGARAAVVES   34 (221)
T ss_dssp             EEEECCS-HHHHHHHHHHHHTTCCEEEEES
T ss_pred             EEEECCC-HHHHHHHHHHHHCCCEEEEEec
Confidence            5677998 9999999999999999888753

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=88.54  E-value=0.32  Score=34.48  Aligned_cols=32  Identities=22%  Similarity=0.139  Sum_probs=27.4

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCc
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRNR   45 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~   45 (202)
                      .|+|.||| ..|++++..++..|.++++.-..+
T Consensus         9 dV~IIGAG-~sGl~~a~~L~~~G~~v~i~Ek~~   40 (298)
T d1w4xa1           9 DVLVVGAG-FSGLYALYRLRELGRSVHVIETAG   40 (298)
T ss_dssp             EEEEECCS-HHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcc-HHHHHHHHHHHhCCCCEEEEEcCC
Confidence            58999999 999999999999999887776543

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.44  E-value=0.067  Score=36.93  Aligned_cols=40  Identities=13%  Similarity=-0.074  Sum_probs=26.3

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccH
Q psy2961           7 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDI   48 (202)
Q Consensus         7 ~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~   48 (202)
                      ...+|.+||=+|+|.  |.....+++..+.+|+++.-++...
T Consensus        48 ~~~~g~~vLDlGcG~--G~~~~~~~~~~~~~v~giD~S~~~i   87 (257)
T d2a14a1          48 GGLQGDTLIDIGSGP--TIYQVLAACDSFQDITLSDFTDRNR   87 (257)
T ss_dssp             TSCCEEEEEESSCTT--CCGGGTTGGGTEEEEEEEESCHHHH
T ss_pred             cCCCCCEEEEECCCC--CHhHHHHhccccCcEEEecCCHHHH
Confidence            346788999999874  5555555554444688887776643

>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: L-serine dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.19  E-value=0.89  Score=32.21  Aligned_cols=53  Identities=19%  Similarity=0.151  Sum_probs=40.0

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF   64 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~   64 (202)
                      |..-+|...+|..|.+++..|+.+|.+.+++..... ..++.+.++.+|++-+.
T Consensus        53 g~~~vv~aSsGN~g~a~A~~a~~~G~~~~i~~p~~~-~~~k~~~~~~~Ga~v~~  105 (319)
T d1p5ja_          53 GCAHFVCSSAGNAGMAAAYAARQLGVPATIVVPGTT-PALTIERLKNEGATCKV  105 (319)
T ss_dssp             TCCEEEECCSSHHHHHHHHHHHHHTCCEEEEECTTC-CHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHhhhccccceecccccc-ccccccccccceecccc
Confidence            334456676779999999999999998877775543 35578888999987655

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=87.83  E-value=0.31  Score=34.82  Aligned_cols=31  Identities=23%  Similarity=0.208  Sum_probs=24.3

Q ss_pred             EEEeCCCcHHHHHHHHHHH-----HCCCcEEEEecCc
Q psy2961          14 VIQNGANSACGQNVIQIAR-----HWGLKTINIVRNR   45 (202)
Q Consensus        14 VlI~g~~~~vG~~~i~la~-----~~g~~vi~~~~~~   45 (202)
                      |+|.||| ++|++++.++.     ..|.+|+++-+.+
T Consensus        10 V~IvGaG-~aGl~lA~~La~~~~~~~G~~v~vlEr~~   45 (360)
T d1pn0a1          10 VLIVGAG-PAGLMAARVLSEYVRQKPDLKVRIIDKRS   45 (360)
T ss_dssp             EEEECCS-HHHHHHHHHHHHHHHHSTTCCEEEECSSS
T ss_pred             EEEECcC-HHHHHHHHHHHhcccccCCCcEEEEcCCC
Confidence            7899999 99999776663     5799988776544

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=87.67  E-value=0.34  Score=28.52  Aligned_cols=36  Identities=11%  Similarity=0.115  Sum_probs=22.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      .|++|+|.|+| ..|.-++.-+...+.+++...++..
T Consensus        31 ~gK~VlVVG~g-~Sa~dia~~l~~~ak~v~~~~~r~~   66 (107)
T d2gv8a2          31 VGESVLVVGGA-SSANDLVRHLTPVAKHPIYQSLLGG   66 (107)
T ss_dssp             TTCCEEEECSS-HHHHHHHHHHTTTSCSSEEEECTTC
T ss_pred             CCCeEEEECCC-CCHHHHHHHHHHhcCEEEEEEecCc
Confidence            68999999999 5554444333344556565555443

>d1qb7a_ c.61.1.1 (A:) Adenine PRTase {Leishmania donovani [TaxId: 5661]}

class: Alpha and beta proteins (a/b)
fold: PRTase-like
superfamily: PRTase-like
family: Phosphoribosyltransferases (PRTases)
domain: Adenine PRTase
species: Leishmania donovani [TaxId: 5661]

Probab=87.61  E-value=0.62  Score=31.81  Aligned_cols=37  Identities=16%  Similarity=0.219  Sum_probs=29.9

Q ss_pred             cCCCCCCEEEEeC---CCcHHHHHHHHHHHHCCCcEEEEe
Q psy2961           6 NSLSPGDVVIQNG---ANSACGQNVIQIARHWGLKTINIV   42 (202)
Q Consensus         6 ~~~~~g~~VlI~g---~~~~vG~~~i~la~~~g~~vi~~~   42 (202)
                      ..+.+|++|+|.-   ++|+.-.+++++++..|++|+.++
T Consensus       133 ~~l~~g~rVlIVDDviaTGgT~~aa~~ll~~~Ga~Vvg~~  172 (236)
T d1qb7a_         133 GSIGKGSRVVLIDDVLATGGTALSGLQLVEASDAVVVEMV  172 (236)
T ss_dssp             TSSCTTCEEEEEEEEESSCHHHHHHHHHHHHTTCEEEEEE
T ss_pred             hcccCCceEEEehhhhhccHHHHHHHHHHHHCCCEEEEEE
Confidence            3467999999874   666888999999999999876444

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=87.38  E-value=0.33  Score=34.54  Aligned_cols=30  Identities=27%  Similarity=0.325  Sum_probs=26.2

Q ss_pred             EEEeCCCcHHHHHHHHHHHHCCCcEEEEecC
Q psy2961          14 VIQNGANSACGQNVIQIARHWGLKTINIVRN   44 (202)
Q Consensus        14 VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~   44 (202)
                      |+|.|+| ..|+.++.-|...|++|+.+...
T Consensus        22 VvVIGaG-~aGl~AA~~aa~~G~~V~vlEK~   51 (317)
T d1qo8a2          22 VLVVGAG-SAGFNASLAAKKAGANVILVDKA   51 (317)
T ss_dssp             EEEECCS-HHHHHHHHHHHHHTCCEEEECSS
T ss_pred             EEEECcC-HHHHHHHHHHHHCCCcEEEEeCC
Confidence            7899999 99999998888899999888643

>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Polymyxin resistance protein ArnA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=87.33  E-value=0.84  Score=30.24  Aligned_cols=92  Identities=12%  Similarity=0.090  Sum_probs=53.0

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHH------HHHHHHhcCCceEe----ChhHHHh-HHHhhCCCCC
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDK------LKSYLKSLGADYVF----TEEELRN-ISRDASIPKP   81 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~------~~~~~~~lg~~~v~----~~~~~~~-~~~~~~~~~~   81 (202)
                      +|++.|.+ .+|..+++.+...|.++..++..++...+      -.+.+++.+.....    +.+++.+ +.+    ..+
T Consensus         2 kiv~~~~~-~~g~~~l~~L~~~g~~I~~Vvt~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~i~~----~~~   76 (203)
T d2blna2           2 KTVVFAYH-DMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNVNHPLWVERIAQ----LSP   76 (203)
T ss_dssp             EEEEEECH-HHHHHHHHHHHHTTCEEEEEECCCC------CCCCHHHHHHHHTCCEECCSCCCSHHHHHHHHH----TCC
T ss_pred             eEEEEecC-HHHHHHHHHHHHCCCCEEEEEcCCCCCCcccccCHHHHHHHHcCCcceecccccchhhhhhhhh----hcc
Confidence            57778776 89999999988889998777754432111      13455666665432    1233334 443    477


Q ss_pred             eEEEecCCCchHHH-HHHhcccCcEEEEEe
Q psy2961          82 KLALNCVGGNSATN-LLRTLVSKGVMVTYG  110 (202)
Q Consensus        82 d~vid~~g~~~~~~-~~~~l~~~G~~v~~g  110 (202)
                      |+++-+..+..... +++. .+.|.+....
T Consensus        77 Dlii~~g~~~ii~~~il~~-~~~~~iN~H~  105 (203)
T d2blna2          77 DVIFSFYYRHLIYDEILQL-APAGAFNLHG  105 (203)
T ss_dssp             SEEEEESCCSCCCHHHHTT-CTTCEEEEES
T ss_pred             cceeeeecccchhcccchh-hHHHHHHHhh
Confidence            89886654444333 3433 3445554443

>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Thermotoga maritima [TaxId: 2336]

Probab=87.28  E-value=1.3  Score=26.27  Aligned_cols=51  Identities=18%  Similarity=0.109  Sum_probs=37.7

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF   64 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~   64 (202)
                      |.+|||.-....+-..+..++...|++|+.++.+.+   +.++.+++...+.++
T Consensus         1 GkrILivDD~~~~~~~l~~~L~~~g~~v~~~a~~~~---~al~~~~~~~~dlii   51 (118)
T d1u0sy_           1 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGR---EAVEKYKELKPDIVT   51 (118)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHH---HHHHHHHHHCCSEEE
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCHH---HHHHHHHhccCCEEE
Confidence            678999888878888888888999999887665543   256677666566555

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=87.25  E-value=0.42  Score=32.87  Aligned_cols=30  Identities=10%  Similarity=0.030  Sum_probs=25.6

Q ss_pred             EEEeCCCcHHHHHHHHHHHHCCCcEEEEecC
Q psy2961          14 VIQNGANSACGQNVIQIARHWGLKTINIVRN   44 (202)
Q Consensus        14 VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~   44 (202)
                      |+|.|+| .+|++++.-+...|.+|+++-+.
T Consensus         7 vvIIGaG-i~Gls~A~~La~~G~~V~vlE~~   36 (276)
T d1ryia1           7 AVVIGGG-IIGSAIAYYLAKENKNTALFESG   36 (276)
T ss_dssp             EEEECCS-HHHHHHHHHHHHTTCCEEEECSS
T ss_pred             EEEECcC-HHHHHHHHHHHHCCCcEEEEeCC
Confidence            7888999 99999888888889998887653

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=87.22  E-value=2.2  Score=26.51  Aligned_cols=34  Identities=12%  Similarity=0.053  Sum_probs=24.9

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCC-CcEEEEecCcc
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWG-LKTINIVRNRD   46 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g-~~vi~~~~~~~   46 (202)
                      .+|.|.|+| .+|..++..+...| +..++..+.++
T Consensus         2 kKI~IIGaG-~VG~~~a~~l~~~~~~~elvL~Di~~   36 (146)
T d1hyha1           2 RKIGIIGLG-NVGAAVAHGLIAQGVADDYVFIDANE   36 (146)
T ss_dssp             CEEEEECCS-HHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CeEEEECcC-HHHHHHHHHHHhcCCCceEEEEeccc
Confidence            478899975 99999888777776 35566666554

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=87.17  E-value=0.38  Score=34.19  Aligned_cols=30  Identities=27%  Similarity=0.330  Sum_probs=26.1

Q ss_pred             EEEeCCCcHHHHHHHHHHHHCCCcEEEEecC
Q psy2961          14 VIQNGANSACGQNVIQIARHWGLKTINIVRN   44 (202)
Q Consensus        14 VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~   44 (202)
                      |+|.|+| ..|+.++..|...|++|+.+...
T Consensus        26 VvVIG~G-~aGl~aA~~la~~G~~V~llEk~   55 (322)
T d1d4ca2          26 VVIIGSG-GAGLAAAVSARDAGAKVILLEKE   55 (322)
T ss_dssp             EEEECSS-HHHHHHHHHHHTTTCCEEEECSS
T ss_pred             EEEECcC-HHHHHHHHHHHHCCCcEEEEeCC
Confidence            7888999 99999988888899999988754

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.11  E-value=0.35  Score=32.53  Aligned_cols=28  Identities=18%  Similarity=0.215  Sum_probs=24.8

Q ss_pred             EEEeCCCcHHHHHHHHHHHHCCCcEEEEe
Q psy2961          14 VIQNGANSACGQNVIQIARHWGLKTINIV   42 (202)
Q Consensus        14 VlI~g~~~~vG~~~i~la~~~g~~vi~~~   42 (202)
                      |+|.|+| +.|+.++.-|...|.+|..+-
T Consensus         6 viVIG~G-paGl~aA~~aa~~G~kV~viE   33 (235)
T d1h6va1           6 LIIIGGG-SGGLAAAKEAAKFDKKVMVLD   33 (235)
T ss_dssp             EEEECCS-HHHHHHHHHHGGGCCCEEEEC
T ss_pred             EEEECCC-HHHHHHHHHHHHCCCeEEEEe
Confidence            6788999 999999999999999988875

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=87.03  E-value=0.33  Score=32.24  Aligned_cols=29  Identities=34%  Similarity=0.313  Sum_probs=24.8

Q ss_pred             EEEeCCCcHHHHHHHHHHHHCCCcEEEEec
Q psy2961          14 VIQNGANSACGQNVIQIARHWGLKTINIVR   43 (202)
Q Consensus        14 VlI~g~~~~vG~~~i~la~~~g~~vi~~~~   43 (202)
                      |+|.|+| +.|+.++..|...|.+|..+-.
T Consensus         6 viIIGgG-pAGl~aA~~aar~G~~V~viE~   34 (229)
T d3lada1           6 VIVIGAG-PGGYVAAIKSAQLGLKTALIEK   34 (229)
T ss_dssp             EEEECCS-HHHHHHHHHHHHHTCCEEEEEC
T ss_pred             EEEECcC-HHHHHHHHHHHHCCCeEEEEec
Confidence            5677888 9999999999999999888864

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=86.97  E-value=2  Score=30.42  Aligned_cols=101  Identities=18%  Similarity=0.184  Sum_probs=54.7

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHCCC--cEEEEecCcccHHHHHHHHHhcCCceEeCh-hHHHhHHHhhCCCCCe
Q psy2961           6 NSLSPGDVVIQNGANSACGQNVIQIARHWGL--KTINIVRNRDDIDKLKSYLKSLGADYVFTE-EELRNISRDASIPKPK   82 (202)
Q Consensus         6 ~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~--~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~-~~~~~~~~~~~~~~~d   82 (202)
                      ..+++|++||=..|+.  |-=+.+++...+-  .+++...++.......+.++.+|...++.. .+...+..  ....||
T Consensus       112 l~~~~g~~vlD~CAap--GgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~--~~~~fD  187 (313)
T d1ixka_         112 LDPKPGEIVADMAAAP--GGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGE--LNVEFD  187 (313)
T ss_dssp             HCCCTTCEEEECCSSC--SHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGG--GCCCEE
T ss_pred             ccCCccceeeecccch--hhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhcccccccccccccc--cccccc
Confidence            4578999986555442  4445566665543  466666555533333344567787655521 11111111  124677


Q ss_pred             EE-Ee--cCCCc--------------------------hHHHHHHhcccCcEEEEEe
Q psy2961          83 LA-LN--CVGGN--------------------------SATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        83 ~v-id--~~g~~--------------------------~~~~~~~~l~~~G~~v~~g  110 (202)
                      .| +|  |+|..                          .+..+++++++||++|...
T Consensus       188 ~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsT  244 (313)
T d1ixka_         188 KILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYST  244 (313)
T ss_dssp             EEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEee
Confidence            76 45  55531                          1223567889999887654

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=86.79  E-value=2  Score=28.04  Aligned_cols=96  Identities=16%  Similarity=0.122  Sum_probs=54.6

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCC-----CcEEEEecCcccHHHHHHHHHhcC-------Cc---------------eEeC
Q psy2961          13 VVIQNGANSACGQNVIQIARHWG-----LKTINIVRNRDDIDKLKSYLKSLG-------AD---------------YVFT   65 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g-----~~vi~~~~~~~~~~~~~~~~~~lg-------~~---------------~v~~   65 (202)
                      +|.|.|-| -+|.++.+.+-..+     .+++++...... .+...++-++.       .+               .+++
T Consensus         4 kigINGFG-RIGR~vlR~~~~~~~~~~~i~iv~Ind~~~~-~~~~ayLlkyDSvhG~~~~~v~~~~~~~~~~~~~~~i~~   81 (190)
T d1k3ta1           4 KVGINGFG-RIGRMVFQALCEDGLLGTEIDVVAVVDMNTD-AEYFAYQMRYDTVHGKFKYEVTTTKSSPSVAKDDTLVVN   81 (190)
T ss_dssp             EEEEECCS-HHHHHHHHHHHHTTCBTTTEEEEEEEESCCC-HHHHHHHHHEETTTEECSSCEEEECSSTTCSSCCEEEET
T ss_pred             EEEEECCC-hHHHHHHHHHHHcCCCCCCeEEEEEecCCCC-HHHHHHHhhccccccCCCceEEEccCccccccccceEEc
Confidence            68999998 89999988765432     345665554322 22344443331       10               1111


Q ss_pred             ---------hhHHHhHHHhhCCCCCeEEEecCCCchHHH-HHHhcccCcEEEEEecc
Q psy2961          66 ---------EEELRNISRDASIPKPKLALNCVGGNSATN-LLRTLVSKGVMVTYGGM  112 (202)
Q Consensus        66 ---------~~~~~~~~~~~~~~~~d~vid~~g~~~~~~-~~~~l~~~G~~v~~g~~  112 (202)
                               ..++.++.+.  ..++|+|+||+|--...+ +...+..|.+-|.+..+
T Consensus        82 g~~i~~~~~~~~p~~i~W~--~~gvDiViEcTG~f~~~~~a~~hl~~GakkViiSAP  136 (190)
T d1k3ta1          82 GHRILCVKAQRNPADLPWG--KLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAP  136 (190)
T ss_dssp             TEEEEEEECCSCGGGSCHH--HHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSC
T ss_pred             CceEEecccCCChhHCCHh--hcCCcEEEEecccccccccchhhcccCcceeeeccC
Confidence                     1122221111  147999999999655444 66678777777776543

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=86.77  E-value=0.46  Score=32.83  Aligned_cols=30  Identities=27%  Similarity=0.192  Sum_probs=25.7

Q ss_pred             EEEeCCCcHHHHHHHHHHHHCCCcEEEEecC
Q psy2961          14 VIQNGANSACGQNVIQIARHWGLKTINIVRN   44 (202)
Q Consensus        14 VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~   44 (202)
                      |+|.|+| .+|+.++.-+...|.+|+++-..
T Consensus         6 vvIIGaG-i~Gls~A~~La~~G~~V~viE~~   35 (281)
T d2gf3a1           6 VIVVGAG-SMGMAAGYQLAKQGVKTLLVDAF   35 (281)
T ss_dssp             EEEECCS-HHHHHHHHHHHHTTCCEEEECSS
T ss_pred             EEEECcC-HHHHHHHHHHHHCCCcEEEEeCC
Confidence            7888999 99999888888899999888654

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=86.62  E-value=2.4  Score=26.32  Aligned_cols=35  Identities=20%  Similarity=0.210  Sum_probs=26.0

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcc
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRD   46 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~   46 (202)
                      ..+|.|.|+| .+|..++..+...|. .-++..+.++
T Consensus         5 ~~KI~IIGaG-~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           5 HQKVVLVGDG-AVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             BCEEEEECCS-HHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCEEEEECCC-HHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            4689999985 899998888887773 4566665544

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=86.50  E-value=2.4  Score=26.21  Aligned_cols=32  Identities=16%  Similarity=0.041  Sum_probs=25.2

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecC
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGL-KTINIVRN   44 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~   44 (202)
                      +|.|.|++|.+|..++..+...+. ..+...+-
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di   34 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI   34 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEec
Confidence            688999877999999988888875 55666653

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=86.42  E-value=2.5  Score=26.43  Aligned_cols=37  Identities=11%  Similarity=0.041  Sum_probs=26.7

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      ++..+|.|.|+| .+|..++.++...+..-++..+..+
T Consensus         5 ~k~~KI~IIGaG-~VG~~lA~~l~~~~~~el~L~D~~~   41 (154)
T d1pzga1           5 QRRKKVAMIGSG-MIGGTMGYLCALRELADVVLYDVVK   41 (154)
T ss_dssp             SCCCEEEEECCS-HHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             cCCCcEEEECCC-HHHHHHHHHHHhCCCceEEEEEecc
Confidence            456789999985 9999888888877763355555443

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.40  E-value=0.31  Score=30.84  Aligned_cols=34  Identities=18%  Similarity=0.153  Sum_probs=28.9

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEE
Q psy2961           6 NSLSPGDVVIQNGANSACGQNVIQIARHWGLKTIN   40 (202)
Q Consensus         6 ~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~   40 (202)
                      .....|++|+|.|+| .+|.-++..+...|+++..
T Consensus        24 ~~~~~gkrVvVIGgG-~~g~d~a~~~~r~G~~~~~   57 (162)
T d1ps9a2          24 DKAPVGNKVAIIGCG-GIGFDTAMYLSQPGESTSQ   57 (162)
T ss_dssp             SCCCCCSEEEEECCH-HHHHHHHHHHTCCSSCGGG
T ss_pred             CccccCCceEEEcCc-hhHHHHHHHHHHcCCccce
Confidence            346789999999998 9999999999999986543

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.39  E-value=0.49  Score=33.49  Aligned_cols=30  Identities=17%  Similarity=0.311  Sum_probs=25.7

Q ss_pred             EEEeCCCcHHHHHHHHHHHHCCCcEEEEecC
Q psy2961          14 VIQNGANSACGQNVIQIARHWGLKTINIVRN   44 (202)
Q Consensus        14 VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~   44 (202)
                      |+|.|+| ..|+.++..++..|.+|+++-.+
T Consensus         2 ViVIGaG-~aGL~aA~~L~~~G~~V~VlE~~   31 (383)
T d2v5za1           2 VVVVGGG-ISGMAAAKLLHDSGLNVVVLEAR   31 (383)
T ss_dssp             EEEECCB-HHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCC-HHHHHHHHHHHhCCCCEEEEecC
Confidence            6788999 99999999889999998887543

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=86.36  E-value=0.43  Score=33.94  Aligned_cols=29  Identities=21%  Similarity=0.243  Sum_probs=25.2

Q ss_pred             EEEeCCCcHHHHHHHHHHHHCCCcEEEEec
Q psy2961          14 VIQNGANSACGQNVIQIARHWGLKTINIVR   43 (202)
Q Consensus        14 VlI~g~~~~vG~~~i~la~~~g~~vi~~~~   43 (202)
                      |+|.|+| ..|+.++--|...|++|+.+..
T Consensus         8 VvVIG~G-~AGl~AAl~aa~~G~~V~liEK   36 (336)
T d2bs2a2           8 SLVIGGG-LAGLRAAVATQQKGLSTIVLSL   36 (336)
T ss_dssp             EEEECCS-HHHHHHHHHHHTTTCCEEEECS
T ss_pred             EEEECcC-HHHHHHHHHHHHCCCCEEEEec
Confidence            7888998 9999998888889999888864

>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Salmonella typhimurium [TaxId: 90371]

Probab=86.18  E-value=1.5  Score=30.61  Aligned_cols=57  Identities=25%  Similarity=0.342  Sum_probs=40.7

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe
Q psy2961           6 NSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF   64 (202)
Q Consensus         6 ~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~   64 (202)
                      +.+++|.+|+. ..+|..|.+++..++.+|.+.+++...... ..+...++.+|++.+.
T Consensus        56 g~~~~~~~vv~-assGn~g~a~A~~a~~~g~~~~i~~p~~~~-~~k~~~~~~~ga~v~~  112 (302)
T d1fcja_          56 GVLKPGVELVE-PTNGNTGIALAYVAAARGYKLTLTMPETMS-IERRKLLKALGANLVL  112 (302)
T ss_dssp             TCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCCEEEEEETTSC-HHHHHHHHHTTCEEEE
T ss_pred             CCCCCCceEEE-eccccchhHHHHHHHHhccCCceEEeecCc-HHHHHHHHHhccceEE
Confidence            45667777655 444489999999999999987766644332 4467888888877543

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=86.10  E-value=1.8  Score=26.68  Aligned_cols=33  Identities=9%  Similarity=0.087  Sum_probs=23.6

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcc
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGL-KTINIVRNRD   46 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~   46 (202)
                      +|.|.|+| .+|..++..+...+. .-++..+.++
T Consensus         2 KI~IIGaG-~VG~~~a~~l~~~~l~~el~L~Di~~   35 (140)
T d1a5za1           2 KIGIVGLG-RVGSSTAFALLMKGFAREMVLIDVDK   35 (140)
T ss_dssp             EEEEECCS-HHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECcC-HHHHHHHHHHHhCCCCCEEEEEeccc
Confidence            57788985 899998877776664 5566666544

>d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.05  E-value=2.4  Score=25.76  Aligned_cols=85  Identities=15%  Similarity=0.121  Sum_probs=52.6

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccH---------HHHHHHHHhcCCceEe--ChhHH-Hh-HHH
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDI---------DKLKSYLKSLGADYVF--TEEEL-RN-ISR   74 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~---------~~~~~~~~~lg~~~v~--~~~~~-~~-~~~   74 (202)
                      +.+..+|+|.|.+|.-|....+.++..|-++++-+.+...-         +--.+..++.+++.-+  .+..+ .+ +.+
T Consensus        12 i~k~TrVivQGiTG~~G~~ht~~m~~YGT~iVaGVtPgKgG~~~~giPVf~tV~eA~~~~~~daSvIfVPp~~a~dAi~E   91 (130)
T d1euca1          12 VDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEAKEQTGATASVIYVPPPFAAAAINE   91 (130)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCHHHHHHHHHH
T ss_pred             EcCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEeeccCCCCccccCccchhhHHHHHHhcCCcEEEEecCHHHHHHHHHH
Confidence            46778999999999999999999999999998877653210         0012333445554322  33332 23 555


Q ss_pred             hhCCCCCeEEEecCCCchH
Q psy2961          75 DASIPKPKLALNCVGGNSA   93 (202)
Q Consensus        75 ~~~~~~~d~vid~~g~~~~   93 (202)
                      ..+ .++.+++.-+-+-..
T Consensus        92 Ai~-agI~liV~ITEgIPv  109 (130)
T d1euca1          92 AID-AEVPLVVCITEGIPQ  109 (130)
T ss_dssp             HHH-TTCSEEEECCCCCCH
T ss_pred             HHh-CCCCEEEEecCCCCH
Confidence            443 567776665544433

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.99  E-value=2.8  Score=26.58  Aligned_cols=93  Identities=12%  Similarity=0.129  Sum_probs=51.6

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCC----CcEEEEecCcccH-----------HHHHHHHHhcCCceEeChhHHHhHHHhhC
Q psy2961          13 VVIQNGANSACGQNVIQIARHWG----LKTINIVRNRDDI-----------DKLKSYLKSLGADYVFTEEELRNISRDAS   77 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g----~~vi~~~~~~~~~-----------~~~~~~~~~lg~~~v~~~~~~~~~~~~~~   77 (202)
                      +|.|.|.| .+|..++++.....    .++..++.+....           ....+.+...... ..+..++..  ....
T Consensus         6 ~I~l~G~G-~VG~~l~~~l~~~~~~l~~~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~   81 (168)
T d1ebfa1           6 NVAVIGAG-VVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGSDWKAALAASTTK-TLPLDDLIA--HLKT   81 (168)
T ss_dssp             EEEEECCS-HHHHHHHHHHHHCCCSSEEEEEEEECSSBEEECSSCSCCSCTTCHHHHHHTCCCB-CCCHHHHHH--HHTT
T ss_pred             EEEEEeCC-HHHHHHHHHHHHhHHHhhhheEEEEEeeeeeecccccchHhhhhhhhhhhhcccc-cccHHHHHH--Hhcc
Confidence            57889998 99999987766542    3566666543210           0001111111111 111122222  1222


Q ss_pred             CCCCeEEEecCCCchHHH-HHHhcccCcEEEEE
Q psy2961          78 IPKPKLALNCVGGNSATN-LLRTLVSKGVMVTY  109 (202)
Q Consensus        78 ~~~~d~vid~~g~~~~~~-~~~~l~~~G~~v~~  109 (202)
                      ....++++||+++..... ...+|..|=++|+.
T Consensus        82 ~~~~~vivd~t~~~~~~~~~~~aL~~G~hVVTA  114 (168)
T d1ebfa1          82 SPKPVILVDNTSSAYIAGFYTKFVENGISIATP  114 (168)
T ss_dssp             CSSCEEEEECSCCHHHHTTHHHHHHTTCEEECC
T ss_pred             CCCceEEEEecCChHHHHHHHHHHHcCCeEEec
Confidence            345799999999887654 56788888888774

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=85.91  E-value=1.3  Score=27.72  Aligned_cols=26  Identities=15%  Similarity=0.023  Sum_probs=20.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWG   35 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g   35 (202)
                      ..-+|.|.||+|.+|..++.+....+
T Consensus         3 ~p~KV~IiGA~G~VG~~~a~~l~~~~   28 (154)
T d1y7ta1           3 APVRVAVTGAAGQIGYSLLFRIAAGE   28 (154)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcc
Confidence            33489999998899999888777543

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=85.76  E-value=1.2  Score=30.59  Aligned_cols=97  Identities=14%  Similarity=0.145  Sum_probs=55.3

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHC-CCcEEEEecCcccHHHHHHHHHhcCCce-Ee-ChhHHHhHHHhhCCCCCeE
Q psy2961           7 SLSPGDVVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADY-VF-TEEELRNISRDASIPKPKL   83 (202)
Q Consensus         7 ~~~~g~~VlI~g~~~~vG~~~i~la~~~-g~~vi~~~~~~~~~~~~~~~~~~lg~~~-v~-~~~~~~~~~~~~~~~~~d~   83 (202)
                      .++...+||=.|+|  .|..++.+++.. +.+++++. .++......+.+.+.|... +. ...++   .+.. ..++|+
T Consensus        78 d~~~~~~vlDvG~G--~G~~~~~l~~~~P~~~~~~~D-lp~~~~~a~~~~~~~~~~~ri~~~~~d~---~~~~-p~~~D~  150 (256)
T d1qzza2          78 DWSAVRHVLDVGGG--NGGMLAAIALRAPHLRGTLVE-LAGPAERARRRFADAGLADRVTVAEGDF---FKPL-PVTADV  150 (256)
T ss_dssp             CCTTCCEEEEETCT--TSHHHHHHHHHCTTCEEEEEE-CHHHHHHHHHHHHHTTCTTTEEEEECCT---TSCC-SCCEEE
T ss_pred             CCccCCEEEEECCC--CCHHHHHHHHhhcCcEEEEec-ChHHHHHHHHHHhhcCCcceeeeeeeec---cccc-cccchh
Confidence            45677888888886  588999999987 56666654 3443222333444444321 11 11111   1111 146888


Q ss_pred             EEecC-----CCch----HHHHHHhcccCcEEEEEe
Q psy2961          84 ALNCV-----GGNS----ATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        84 vid~~-----g~~~----~~~~~~~l~~~G~~v~~g  110 (202)
                      ++-.-     +.+.    +.++.+.|+|||+++.+.
T Consensus       151 v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d  186 (256)
T d1qzza2         151 VLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLD  186 (256)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhccccccccCcHHHHHHHHHHHhhcCCcceeEEEE
Confidence            77432     2221    223667899999999876

>d1g2qa_ c.61.1.1 (A:) Adenine PRTase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PRTase-like
superfamily: PRTase-like
family: Phosphoribosyltransferases (PRTases)
domain: Adenine PRTase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.75  E-value=0.97  Score=29.30  Aligned_cols=37  Identities=14%  Similarity=0.182  Sum_probs=30.4

Q ss_pred             cCCCCCCEEEEeC---CCcHHHHHHHHHHHHCCCcEEEEe
Q psy2961           6 NSLSPGDVVIQNG---ANSACGQNVIQIARHWGLKTINIV   42 (202)
Q Consensus         6 ~~~~~g~~VlI~g---~~~~vG~~~i~la~~~g~~vi~~~   42 (202)
                      ..+.+|++|+|.-   ++|+.=.+++++++..|++|+.+.
T Consensus       117 ~~l~~g~rVlIVDDviaTGgT~~a~~~ll~~~Ga~vvgv~  156 (178)
T d1g2qa_         117 NAIPAGSNVIIVDDIIATGGSAAAAGELVEQLEANLLEYN  156 (178)
T ss_dssp             TSSCTTCEEEEEEEEESSCHHHHHHHHHHHHTTCEEEEEE
T ss_pred             ccccCCCEEEEEehHhhhChHHHHHHHHHHHcCCEEEEEE
Confidence            4578999999874   666888999999999999977544

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=85.74  E-value=1.6  Score=28.53  Aligned_cols=103  Identities=14%  Similarity=0.092  Sum_probs=53.6

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHC-CCcEEEEecCcccHHHHHHHHHhcCCceEe---ChhHHHhHHHhhCCCCC
Q psy2961           6 NSLSPGDVVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVF---TEEELRNISRDASIPKP   81 (202)
Q Consensus         6 ~~~~~g~~VlI~g~~~~vG~~~i~la~~~-g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~---~~~~~~~~~~~~~~~~~   81 (202)
                      .++++|+.+ |-.+. |.|-.+-.++... +.+++++...++......+.++.++....+   +..+...+....+...+
T Consensus        19 l~~~~~~~~-lD~t~-G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~~~~v   96 (192)
T d1m6ya2          19 LKPEDEKII-LDCTV-GEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKV   96 (192)
T ss_dssp             HCCCTTCEE-EETTC-TTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCE
T ss_pred             hCCCCCCEE-EEecC-CCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHHcCCCCc
Confidence            457788876 43333 3454455555544 678888887776432223333445543222   23344442222333578


Q ss_pred             eEE-EecCCCc---------------hHHHHHHhcccCcEEEEEe
Q psy2961          82 KLA-LNCVGGN---------------SATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        82 d~v-id~~g~~---------------~~~~~~~~l~~~G~~v~~g  110 (202)
                      |.| +|..-+.               ......+.|+++|+++.+.
T Consensus        97 dgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~  141 (192)
T d1m6ya2          97 DGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVIS  141 (192)
T ss_dssp             EEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEE
T ss_pred             ceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeec
Confidence            876 5532111               0112355778888887765

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=85.26  E-value=0.68  Score=31.76  Aligned_cols=31  Identities=23%  Similarity=0.165  Sum_probs=26.8

Q ss_pred             EEEeCCCcHHHHHHHHHHHHCCCcEEEEecCc
Q psy2961          14 VIQNGANSACGQNVIQIARHWGLKTINIVRNR   45 (202)
Q Consensus        14 VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~   45 (202)
                      |+|.|+| +.|+.++..+..+|.+|.++...+
T Consensus        45 vvVIGgG-~aG~~aA~~~a~~G~kv~vve~~~   75 (261)
T d1mo9a1          45 AIFIGGG-AAGRFGSAYLRAMGGRQLIVDRWP   75 (261)
T ss_dssp             EEEECCS-HHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCC-HHHHHHHHHHHHCCCeEEEEeccC
Confidence            6777988 899999999999999999887654

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=85.16  E-value=0.17  Score=36.16  Aligned_cols=26  Identities=8%  Similarity=0.103  Sum_probs=22.8

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcE
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKT   38 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~v   38 (202)
                      +|||+|++|-+|..+++.+...|..|
T Consensus         2 kIlItG~tGfIG~~l~~~L~~~g~~v   27 (322)
T d1r6da_           2 RLLVTGGAGFIGSHFVRQLLAGAYPD   27 (322)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTSCTT
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCCc
Confidence            69999999999999999888887654

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=84.88  E-value=3.2  Score=26.30  Aligned_cols=42  Identities=17%  Similarity=0.054  Sum_probs=31.9

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcC
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG   59 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg   59 (202)
                      +|-|.|.| .+|...+.-+...|.+|++..++++    +.+.+.+.+
T Consensus         3 kIGvIGlG-~MG~~ma~~L~~~G~~V~~~dr~~~----~~~~l~~~~   44 (178)
T d1pgja2           3 DVGVVGLG-VMGANLALNIAEKGFKVAVFNRTYS----KSEEFMKAN   44 (178)
T ss_dssp             SEEEECCS-HHHHHHHHHHHHTTCCEEEECSSHH----HHHHHHHHT
T ss_pred             EEEEEeeh-HHHHHHHHHHHHCCCeEEEEECCHH----HHHHHHHcC
Confidence            47788998 9999988888888999988776665    455554444

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=84.78  E-value=0.69  Score=32.96  Aligned_cols=33  Identities=12%  Similarity=-0.043  Sum_probs=24.0

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCC--CcEEEEecCc
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWG--LKTINIVRNR   45 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g--~~vi~~~~~~   45 (202)
                      .+|+|.||| ..|++++..++..|  .+|++.-+++
T Consensus         5 KrVaIIGaG-~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           5 RKIAIIGAG-PSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             CEEEEECCS-HHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CeEEEECcC-HHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            479999999 99998876555444  4776666554

>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=84.27  E-value=1.5  Score=27.69  Aligned_cols=30  Identities=20%  Similarity=0.108  Sum_probs=26.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCcEE
Q psy2961          10 PGDVVIQNGANSACGQNVIQIARHWGLKTI   39 (202)
Q Consensus        10 ~g~~VlI~g~~~~vG~~~i~la~~~g~~vi   39 (202)
                      +|++|.|.+.+|+.|.+++..+...|.++-
T Consensus         2 ~G~rvaiit~sGG~~~l~aD~~~~~Gl~l~   31 (163)
T d2csua3           2 RGNKVAIMTNAGGPGVLTADELDKRGLKLA   31 (163)
T ss_dssp             SSSEEEEEESCHHHHHHHHHHHHTTTCEEC
T ss_pred             CCCeEEEEECChHHHHHHHHHHHHcCCccC
Confidence            588999999999999999999999998653

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=84.13  E-value=3.2  Score=25.66  Aligned_cols=35  Identities=14%  Similarity=0.099  Sum_probs=23.8

Q ss_pred             EEEEeCCCcHHHHHHHHHHH-HCC-CcEEEEecCccc
Q psy2961          13 VVIQNGANSACGQNVIQIAR-HWG-LKTINIVRNRDD   47 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~-~~g-~~vi~~~~~~~~   47 (202)
                      +|.|.|++|.+|..++.+.. ..+ +.-+...+.++.
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~   38 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPV   38 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTT
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccccc
Confidence            58899987799988877654 434 455666665543

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=83.82  E-value=0.69  Score=31.67  Aligned_cols=29  Identities=17%  Similarity=0.185  Sum_probs=25.2

Q ss_pred             EEEeCCCcHHHHHHHHHHHHCCCcEEEEec
Q psy2961          14 VIQNGANSACGQNVIQIARHWGLKTINIVR   43 (202)
Q Consensus        14 VlI~g~~~~vG~~~i~la~~~g~~vi~~~~   43 (202)
                      |+|.|+| +.|+.++.-|...|.+|..+-.
T Consensus         4 viVIG~G-~aG~~aA~~aa~~G~~V~liE~   32 (259)
T d1onfa1           4 LIVIGGG-SGGMAAARRAARHNAKVALVEK   32 (259)
T ss_dssp             EEEECCS-HHHHHHHHHHHHTTCCEEEEES
T ss_pred             EEEECCC-HHHHHHHHHHHHCCCeEEEEec
Confidence            5788998 8899999999999999888864

>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=83.80  E-value=1.4  Score=31.59  Aligned_cols=53  Identities=13%  Similarity=0.002  Sum_probs=35.2

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe
Q psy2961          11 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF   64 (202)
Q Consensus        11 g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~   64 (202)
                      ++++++ ..+|..|.+++.+|+..|.+.+.+........++...++.+|++-+.
T Consensus        77 ~~~iv~-~SsGN~g~a~a~~a~~~g~~~~i~~p~~~~~~~~~~~~~~~Ga~vi~  129 (351)
T d1v7ca_          77 AQAVAC-ASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQ  129 (351)
T ss_dssp             CSEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTCSCHHHHHHHHHTTCEEEE
T ss_pred             CCeeee-eccccHHHHHHHHHhhhcccceeecCCchHHHHHHHhhhcCCCceEe
Confidence            455544 55569999999999999997544443322212355667889987655

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=83.76  E-value=0.95  Score=30.70  Aligned_cols=31  Identities=16%  Similarity=0.152  Sum_probs=27.0

Q ss_pred             EEEeCCCcHHHHHHHHHHHHCCCcEEEEecCc
Q psy2961          14 VIQNGANSACGQNVIQIARHWGLKTINIVRNR   45 (202)
Q Consensus        14 VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~   45 (202)
                      |+|.|+| +.|+.|+-.|..+|+++..+..+.
T Consensus         5 VIVIGgG-~AG~eAA~~aAR~G~ktllit~~~   35 (230)
T d2cula1           5 VLIVGAG-FSGAETAFWLAQKGVRVGLLTQSL   35 (230)
T ss_dssp             EEEECCS-HHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             EEEECcC-HHHHHHHHHHHHCCCcEEEEEecc
Confidence            5677998 999999999999999999887653

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=83.74  E-value=3  Score=24.94  Aligned_cols=63  Identities=17%  Similarity=0.090  Sum_probs=43.7

Q ss_pred             ccCCCCCCEEEEeCCCcHHHHHHHHHHHHCCC--cEEEEecCcccHHHHHHHHHhcCCceEeChhHHHh
Q psy2961           5 YNSLSPGDVVIQNGANSACGQNVIQIARHWGL--KTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN   71 (202)
Q Consensus         5 ~~~~~~g~~VlI~g~~~~vG~~~i~la~~~g~--~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~   71 (202)
                      .+++..-+.+++.-.....-..++..++.+..  ++++.+.+++    ..+.++..|++.++.+.....
T Consensus        57 ~a~i~~A~~vi~~~~~d~~n~~~~~~~r~~~~~~~iia~~~~~~----~~~~l~~~G~d~vi~p~~~~~  121 (129)
T d2fy8a1          57 KANVRGARAVIVNLESDSETIHCILGIRKIDESVRIIAEAERYE----NIEQLRMAGADQVISPFVISG  121 (129)
T ss_dssp             HTTCTTCSEEEECCSSHHHHHHHHHHHHHHCSSSCEEEECSSGG----GHHHHHHHHCSEEECHHHHHH
T ss_pred             HhhhhcCcEEEEeccchhhhHHHHHHHHHHCCCceEEEEEcCHH----HHHHHHHCCCCEEEChHHHHH
Confidence            45667777777765554566777788887754  5666666665    367788889999998765544

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=83.62  E-value=0.41  Score=31.55  Aligned_cols=88  Identities=14%  Similarity=0.114  Sum_probs=53.1

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEeChhHHHhHHHhhCCCCCeEEEec
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNC   87 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~~~~~~~~~~~~~~~~~~d~vid~   87 (202)
                      +.++.+||=.|+|.  |..+..+     .+++++.-+++    ..+.+++-+...+...  ..++  ......+|+|+..
T Consensus        34 ~~~~~~vLDiGcG~--G~~~~~~-----~~~~giD~s~~----~~~~a~~~~~~~~~~d--~~~l--~~~~~~fD~I~~~   98 (208)
T d1vlma_          34 LLPEGRGVEIGVGT--GRFAVPL-----KIKIGVEPSER----MAEIARKRGVFVLKGT--AENL--PLKDESFDFALMV   98 (208)
T ss_dssp             HCCSSCEEEETCTT--STTHHHH-----TCCEEEESCHH----HHHHHHHTTCEEEECB--TTBC--CSCTTCEEEEEEE
T ss_pred             hCCCCeEEEECCCC--ccccccc-----ceEEEEeCChh----hccccccccccccccc--cccc--ccccccccccccc
Confidence            45778899999874  5555554     24566655554    5677776655544321  1111  0123568999865


Q ss_pred             CCCc-------hHHHHHHhcccCcEEEEEe
Q psy2961          88 VGGN-------SATNLLRTLVSKGVMVTYG  110 (202)
Q Consensus        88 ~g~~-------~~~~~~~~l~~~G~~v~~g  110 (202)
                      ..-.       .+.++.+.|+|||.++...
T Consensus        99 ~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~  128 (208)
T d1vlma_          99 TTICFVDDPERALKEAYRILKKGGYLIVGI  128 (208)
T ss_dssp             SCGGGSSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccccccccchhhhhhcCCCCceEEEEe
Confidence            4322       1234678999999998865

>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.20  E-value=1.5  Score=33.14  Aligned_cols=57  Identities=9%  Similarity=-0.056  Sum_probs=39.4

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHhcCCceEe
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF   64 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~lg~~~v~   64 (202)
                      .+.+...++.+.+|..|.+++..|+..|.+.+++.-.......+...++.+|+..+.
T Consensus       171 ~~~~~~~vv~aSsGNtg~AlAa~aa~~Gi~~~I~~P~~~~s~~k~~~~~~~GA~V~~  227 (477)
T d1e5xa_         171 MKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLS  227 (477)
T ss_dssp             TTCCCCEEEECCCSHHHHHHHHHHHHHTCCEEEEEEGGGCCHHHHHHHHHTTCEEEE
T ss_pred             ccCCcceEEeecCchHHHHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHhcCccccc
Confidence            345566677788889999999999999998655553322113366777888876544

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.81  E-value=0.92  Score=29.89  Aligned_cols=40  Identities=10%  Similarity=0.042  Sum_probs=30.7

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHh
Q psy2961          13 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS   57 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~   57 (202)
                      +|.|.|.| -+|+.++-.+...|.+|++...+++    +.+.+.+
T Consensus         2 kI~ViGlG-~vGl~~a~~la~~g~~V~g~D~n~~----~i~~ln~   41 (202)
T d1mv8a2           2 RISIFGLG-YVGAVCAGCLSARGHEVIGVDVSST----KIDLINQ   41 (202)
T ss_dssp             EEEEECCS-TTHHHHHHHHHHTTCEEEEECSCHH----HHHHHHT
T ss_pred             EEEEECCC-HhHHHHHHHHHhCCCcEEEEeCCHH----HHHHhcc
Confidence            57899999 9999988888889999887765543    4555543

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=82.37  E-value=0.93  Score=30.22  Aligned_cols=33  Identities=9%  Similarity=-0.082  Sum_probs=24.6

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHH--CCCcEEEEecCc
Q psy2961          12 DVVIQNGANSACGQNVIQIARH--WGLKTINIVRNR   45 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~--~g~~vi~~~~~~   45 (202)
                      .+|+|.|+| +.|+.+++-++.  .|++|++.-..+
T Consensus         2 ~kv~iIGaG-paGl~aA~~L~~~~~~~~V~v~e~~~   36 (230)
T d1cjca2           2 PQICVVGSG-PAGFYTAQHLLKHHSRAHVDIYEKQL   36 (230)
T ss_dssp             CEEEEECCS-HHHHHHHHHHHHHCSSCEEEEECSSS
T ss_pred             CeEEEECcc-HHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            379999999 999998875543  477877775444

>d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Thermus thermophilus [TaxId: 274]

Probab=81.99  E-value=3.6  Score=24.62  Aligned_cols=39  Identities=18%  Similarity=0.170  Sum_probs=33.5

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      +.+..+|+|.|.+|.-|....+.++..|-++++-+.+..
T Consensus         4 i~k~trVivQGiTG~~G~~ht~~m~~yGT~iVaGVtPgk   42 (121)
T d1oi7a1           4 VNRETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGK   42 (121)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTC
T ss_pred             ecCCCcEEEEcCCCcHHHHHHHHHHHhCCceEeeeecCC
Confidence            456779999999999999999999999999988886654

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=81.91  E-value=0.96  Score=27.41  Aligned_cols=37  Identities=14%  Similarity=0.027  Sum_probs=27.2

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcc
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD   46 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~   46 (202)
                      =.|++|+|.|+|......++.|++. ..+|+.+.+.++
T Consensus        28 ~~gk~V~VvGgG~sA~~~A~~L~~~-a~~V~li~r~~~   64 (126)
T d1fl2a2          28 FKGKRVAVIGGGNSGVEAAIDLAGI-VEHVTLLEFAPE   64 (126)
T ss_dssp             GBTCEEEEECCSHHHHHHHHHHHTT-BSEEEEECSSSS
T ss_pred             cCCceEEEEeCCHHHHHHHHhhhcc-CCceEEEecccc
Confidence            3689999999986666666666654 557888877654

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=81.78  E-value=1.1  Score=31.03  Aligned_cols=31  Identities=19%  Similarity=0.259  Sum_probs=25.1

Q ss_pred             EEEeCCCcHHHHHHHH-HHHHCCCcEEEEecCc
Q psy2961          14 VIQNGANSACGQNVIQ-IARHWGLKTINIVRNR   45 (202)
Q Consensus        14 VlI~g~~~~vG~~~i~-la~~~g~~vi~~~~~~   45 (202)
                      |+|.|+| +.|+.++. +|+..|.+|..+-..+
T Consensus        36 ViVIGaG-paGL~aA~~LA~~~G~~V~vlE~~~   67 (278)
T d1rp0a1          36 VVVVGAG-SAGLSAAYEISKNPNVQVAIIEQSV   67 (278)
T ss_dssp             EEEECCS-HHHHHHHHHHHTSTTSCEEEEESSS
T ss_pred             EEEECCC-HHHHHHHHHHHHccCCeEEEEecCC
Confidence            8888998 99998765 5666799998888654

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=81.37  E-value=1.1  Score=32.82  Aligned_cols=32  Identities=16%  Similarity=0.225  Sum_probs=23.5

Q ss_pred             EEEEeCCCcHHHHHHHH-HHH-----HCCCcEEEEecCc
Q psy2961          13 VVIQNGANSACGQNVIQ-IAR-----HWGLKTINIVRNR   45 (202)
Q Consensus        13 ~VlI~g~~~~vG~~~i~-la~-----~~g~~vi~~~~~~   45 (202)
                      =|+|.||| +.|++++. ||+     ..|.+|.++-+..
T Consensus        34 DViIVGgG-PAGlsaA~~LA~l~~~~~~Gl~VlllEK~~   71 (380)
T d2gmha1          34 DVVIVGAG-PAGLSAATRLKQLAAQHEKDLRVCLVEKAA   71 (380)
T ss_dssp             SEEEECCS-HHHHHHHHHHHHHHHHTTCCCCEEEECSSS
T ss_pred             CEEEECCC-HHHHHHHHHHHhhhhhhcCCCEEEEEcCCC
Confidence            37788999 99988654 444     2789998887654

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.29  E-value=1.4  Score=26.94  Aligned_cols=36  Identities=14%  Similarity=0.199  Sum_probs=26.1

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHH----HHCCCcEEEEecCc
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIA----RHWGLKTINIVRNR   45 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la----~~~g~~vi~~~~~~   45 (202)
                      +++++++|.|+| .+|.-++..+    +..|.+|+.+...+
T Consensus        35 ~~~k~i~IvGgG-~~G~E~A~~l~~~~~~~g~~Vt~i~~~~   74 (137)
T d1m6ia2          35 REVKSITIIGGG-FLGSELACALGRKARALGTEVIQLFPEK   74 (137)
T ss_dssp             HHCSEEEEECCS-HHHHHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             hcCCEEEEECCC-HHHHHHHHHHHHHHHhcCCEEEEecccc
Confidence            457899999998 9986544333    46789888877655

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=81.06  E-value=1.1  Score=30.18  Aligned_cols=36  Identities=25%  Similarity=0.392  Sum_probs=30.0

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCc
Q psy2961           9 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR   45 (202)
Q Consensus         9 ~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~   45 (202)
                      -..++|+++|+| ..|...+++....+.+.+..++++
T Consensus        24 l~d~riv~~GAG-sAg~gia~~l~~~~~~~i~~~D~~   59 (222)
T d1vl6a1          24 IEEVKVVVNGIG-AAGYNIVKFLLDLGVKNVVAVDRK   59 (222)
T ss_dssp             TTTCEEEEECCS-HHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             hhhcEEEEEChH-HHHHHHHHHHHHhcccceEeecce
Confidence            456899999999 789998999888899888777654

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=81.01  E-value=3.2  Score=30.21  Aligned_cols=86  Identities=14%  Similarity=0.123  Sum_probs=50.3

Q ss_pred             cHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHh----cCCceE----------------eChhHHHh-HHHhhCCC
Q psy2961          21 SACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS----LGADYV----------------FTEEELRN-ISRDASIP   79 (202)
Q Consensus        21 ~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~----lg~~~v----------------~~~~~~~~-~~~~~~~~   79 (202)
                      ++.|.-.++.|+..|++-+...+-++.   ..+.+++    .+....                ++..|... +.+  .+.
T Consensus        54 sasG~rsiRya~E~~~~~V~~nDis~~---A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~--~~~  128 (375)
T d2dula1          54 SATGIRGIRFALETPAEEVWLNDISED---AYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE--RHR  128 (375)
T ss_dssp             CTTSHHHHHHHHHSSCSEEEEEESCHH---HHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH--STT
T ss_pred             CCccHHHHHHHHhCCCCEEEEecCCHH---HHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhHh--hcC
Confidence            367999999999888854444443332   3455532    222211                11122222 322  235


Q ss_pred             CCeEE-EecCCCch--HHHHHHhcccCcEEEEEec
Q psy2961          80 KPKLA-LNCVGGNS--ATNLLRTLVSKGVMVTYGG  111 (202)
Q Consensus        80 ~~d~v-id~~g~~~--~~~~~~~l~~~G~~v~~g~  111 (202)
                      .+|+| +|..|.+.  +..++++++.+|-+....+
T Consensus       129 ~fDvIDiDPfGs~~pfldsAi~a~~~~Gll~vTaT  163 (375)
T d2dula1         129 YFHFIDLDPFGSPMEFLDTALRSAKRRGILGVTAT  163 (375)
T ss_dssp             CEEEEEECCSSCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             cCCcccCCCCCCcHHHHHHHHHHhccCCEEEEEec
Confidence            68965 89988864  3448999999988877653

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=80.99  E-value=0.68  Score=33.01  Aligned_cols=29  Identities=14%  Similarity=0.154  Sum_probs=24.9

Q ss_pred             EEEeCCCcHHHHHHHHHHHHCCCcEEEEec
Q psy2961          14 VIQNGANSACGQNVIQIARHWGLKTINIVR   43 (202)
Q Consensus        14 VlI~g~~~~vG~~~i~la~~~g~~vi~~~~   43 (202)
                      |||.|+| .-|+.++--|...|++|+.+..
T Consensus        10 VlVVG~G-~AGl~AAl~aa~~G~~V~lleK   38 (330)
T d1neka2          10 AVVIGAG-GAGMRAALQISQSGQTCALLSK   38 (330)
T ss_dssp             CEEECCS-HHHHHHHHHHHHTTCCCEEECS
T ss_pred             EEEECcC-HHHHHHHHHHHHcCCeEEEEeC
Confidence            6788999 8999988888889999888764

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=80.98  E-value=6.7  Score=27.60  Aligned_cols=96  Identities=14%  Similarity=0.114  Sum_probs=51.0

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEecCcccHHHHHHHHHh----cCCc--eE-eChhHHHh-HHHhh-CC
Q psy2961           8 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS----LGAD--YV-FTEEELRN-ISRDA-SI   78 (202)
Q Consensus         8 ~~~g~~VlI~g~~~~vG~~~i~la~~~g~~vi~~~~~~~~~~~~~~~~~~----lg~~--~v-~~~~~~~~-~~~~~-~~   78 (202)
                      ..+|.+||=+.+++  |...+.++ ..|++|+.+..++.    ..+.+++    .|.+  .+ +-..|..+ +.... .+
T Consensus       130 ~~~~~rVLdlf~~t--G~~sl~aa-~~GA~V~~VD~s~~----al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~  202 (309)
T d2igta1         130 ADRPLKVLNLFGYT--GVASLVAA-AAGAEVTHVDASKK----AIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRG  202 (309)
T ss_dssp             SSSCCEEEEETCTT--CHHHHHHH-HTTCEEEEECSCHH----HHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHT
T ss_pred             ccCCCeEEEecCCC--cHHHHHHH-hCCCeEEEEeChHH----HHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcC
Confidence            45688998776653  55555555 46888887766655    3444432    2321  11 11234444 43322 24


Q ss_pred             CCCeEEEe-c--CC--C--------chHH----HHHHhcccCcEEEEEe
Q psy2961          79 PKPKLALN-C--VG--G--------NSAT----NLLRTLVSKGVMVTYG  110 (202)
Q Consensus        79 ~~~d~vid-~--~g--~--------~~~~----~~~~~l~~~G~~v~~g  110 (202)
                      ..||+||- .  .+  .        .+..    .+..+++++|.++++.
T Consensus       203 ~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t  251 (309)
T d2igta1         203 STYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT  251 (309)
T ss_dssp             CCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred             CCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence            67998763 1  11  0        0111    1346788898776654

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.86  E-value=4.7  Score=25.31  Aligned_cols=34  Identities=15%  Similarity=0.119  Sum_probs=26.0

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC-cEEEEecCcc
Q psy2961          12 DVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRD   46 (202)
Q Consensus        12 ~~VlI~g~~~~vG~~~i~la~~~g~-~vi~~~~~~~   46 (202)
                      .+|.|.|+| .+|..++..+...|. .-++..+.++
T Consensus        20 ~KI~IIGaG-~VG~~~A~~l~~~~l~~elvL~D~~~   54 (159)
T d2ldxa1          20 CKITVVGVG-DVGMACAISILLKGLADELALVDADT   54 (159)
T ss_dssp             CEEEEECCS-HHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred             CeEEEECCC-HHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            579999985 999999988888875 5566665443