Psyllid ID: psy2964

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
Protein Sequence
RFDRGNCNCYGLIVPKSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLADWQWISVITIFPLIVGLIVAIFTPESA
Secondary Structure (PSIPRED)
ccccccccEEEccccccccccccccccHHccccccccccccccccEEEccccccEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHEEccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEccccccccccccccccccccccccccccccccEEEccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
rfdrgncncyglivpkskregrqkeeeEEGKKEKKEEEEEKKERNEELDRRRRRrrrrdnwvcdgssnlaiTRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGvaltpfskDVVLFSLSRfltgvghfNAFIFYYIIVLECvgpkwrtfamtFPFLIFYTVSEVALPWIAYYLADWQWISVITIFPLIVGLIVAIFTPESA
Flexible Loop (DISEMBL)
rfdrgncncyglivpkskregrqkeeeeegkkekkeeeeekkerneeldrrrrrrrrrdnwvcdgssnlaitRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLADWQWISVITIFPLIVGLIVAIFTPESA
Low Complexity Region (SEG)
RFDRGNCNCYGLIVPKSkregrqkeeeeegkkekkeeeeekkerneeldrrrrrrrrrDNWVCDGSSNLAITRsifflgsllggfilsWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLADWQWISVITIFPLIVGLIVAIFTPESA
Disordered region (IsUnstruct)
***********************************************************NWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLADWQWISVITIFPLIVGLIVAIFT****
Disordered Region (DISOPRED)
******CNCYGLIVPKSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLADWQWISVITIFPLIVGLIVAIFTPESA
Disordered Region (DISEMBL)
RFDRGNCNCYGLIVPKS***************************************RRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLADWQWISVITIFPLIVGLIVAIFTPESA
Disordered Region (DISPRO)
*****NCNCYGLIVPKSKREGRQKE**********EEEEEKKERNEELDRRRRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLADWQWISVITIFPLIVGLIVAIFTPES*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
RFDRGNCNCYGLIVPKSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLADWQWISVITIFPLIVGLIVAIFTPESA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	208	2.2.26 [Sep-21-2011]
Q95R48	567	Organic cation transporte	no	N/A	0.875	0.320	0.259	1e-14
Q9VCA2	548	Organic cation transporte	no	N/A	0.875	0.332	0.275	9e-14
O75751	556	Solute carrier family 22	yes	N/A	0.706	0.264	0.337	3e-13
O88446	551	Solute carrier family 22	yes	N/A	0.687	0.259	0.335	1e-12
Q9WTW5	551	Solute carrier family 22	yes	N/A	0.687	0.259	0.335	1e-12
O76082	557	Solute carrier family 22	no	N/A	0.692	0.258	0.309	1e-11
A9CB25	551	Solute carrier family 22	N/A	N/A	0.711	0.268	0.277	5e-11
O08966	556	Solute carrier family 22	no	N/A	0.701	0.262	0.302	6e-11
Q9H015	551	Solute carrier family 22	no	N/A	0.711	0.268	0.277	6e-11
Q63089	556	Solute carrier family 22	no	N/A	0.701	0.262	0.295	2e-10

>sp|Q95R48|OCTL_DROME Organic cation transporter-like protein OS=Drosophila melanogaster GN=Orct2 PE=2 SV=2

 Score = 79.7 bits (195), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 83/185 (44%), Gaps = 3/185 (1%)

Query: 26  EEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRDNW--VCDGSSNLAITRSIFFLGSLLG 83
           EE       +   E K   +   DR +        W  VC      A + S+F LG LLG
Sbjct: 85  EEYLNGSIPRSSNETKTCSSYVYDRSKYLNSAVTEWNLVCGRDFMAATSDSLFMLGVLLG 144

Query: 84  GFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYI 143
             +   ++D+YGR   +  S V+  L   L   + +   ++ +R + G      F+  Y+
Sbjct: 145 SIVFGQLSDKYGRKPILFASLVIQVLFGVLAGVAPEYFTYTFARLMVGATTSGVFLVAYV 204

Query: 144 IVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLADWQWISVITIFPLIVGLIVAIF 203
           + +E VGP  R +A  F  ++F++V  +     AY++ DW+W+ +    P ++ +     
Sbjct: 205 VAMEMVGPDKRLYAGIF-VMMFFSVGFMLTAVFAYFVHDWRWLQIALTLPGLIFMFYYWI 263

Query: 204 TPESA 208
            PESA
Sbjct: 264 IPESA 268

Probably transports organic cations.
Drosophila melanogaster (taxid: 7227)

>sp|Q9VCA2|ORCT_DROME Organic cation transporter protein OS=Drosophila melanogaster GN=Orct PE=1 SV=1

 Score = 77.0 bits (188), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 81/185 (43%), Gaps = 3/185 (1%)

Query: 26  EEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRDNW--VCDGSSNLAITRSIFFLGSLLG 83
           EE       +   E K   +   DR +        W  VC  S   A + S+F LG LLG
Sbjct: 85  EEYLNGSIPRSSNETKTCSSYVYDRSKYLNSAVTEWNLVCSRSLLSATSDSLFMLGVLLG 144

Query: 84  GFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYI 143
             I   ++D+ GR      S V+  +   L   + +   +++SR + G      F+  Y+
Sbjct: 145 SLIFGQMSDKLGRKPTFFASLVLQLIFGVLAAVAPEYFSYTISRMIVGATTSGVFLVAYV 204

Query: 144 IVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLADWQWISVITIFPLIVGLIVAIF 203
           I LE VG  +R FA      +F++V  +     AY++ DW+W+ +    P ++ L     
Sbjct: 205 IALEMVGSSYRLFA-GVAMQMFFSVGFMLTAGFAYFIHDWRWLQIAITLPGLLFLCYYWI 263

Query: 204 TPESA 208
            PESA
Sbjct: 264 IPESA 268

Probably transports organic cations.

Drosophila melanogaster (taxid: 7227)

>sp|O75751|S22A3_HUMAN Solute carrier family 22 member 3 OS=Homo sapiens GN=SLC22A3 PE=1 SV=1

 Score = 75.1 bits (183), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/148 (33%), Positives = 77/148 (52%), Gaps = 1/148 (0%)

Query: 60  NWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKD 119
           + VC  +  L +T++I  LG L G F L + ADRYGRI   L S +   +   +  F+ +
Sbjct: 145 DLVCVNAWMLDLTQAILNLGFLTGAFTLGYAADRYGRIVIYLLSCLGVGVTGVVVAFAPN 204

Query: 120 VVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYY 179
             +F + RFL GV     ++  Y+IV E VG K R   +     +F+T+  + LP IAY+
Sbjct: 205 FPVFVIFRFLQGVFGKGTWMTCYVIVTEIVGSKQRRI-VGIVIQMFFTLGIIILPGIAYF 263

Query: 180 LADWQWISVITIFPLIVGLIVAIFTPES 207
           + +WQ I +    P  + L+     PES
Sbjct: 264 IPNWQGIQLAITLPSFLFLLYYWVVPES 291

Mediates potential-dependent transport of a variety of organic cations. May play a significant role in the disposition of cationic neurotoxins and neurotransmitters in the brain.

Homo sapiens (taxid: 9606)

>sp|O88446|S22A3_RAT Solute carrier family 22 member 3 OS=Rattus norvegicus GN=Slc22a3 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 79/152 (51%), Gaps = 9/152 (5%)

Query: 60  NWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALT----P 115
           + VC  +  L +T++I  LG L G F L + ADRYGR+      +++S  GV +T     
Sbjct: 140 DLVCGNAWMLDLTQAILNLGFLAGAFTLGYAADRYGRLIV----YLISCFGVGITGVVVA 195

Query: 116 FSKDVVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPW 175
           F+ +  +F + RFL GV    A++  ++IV E VG K R   +     +F+T+  + LP 
Sbjct: 196 FAPNFSVFVIFRFLQGVFGKGAWMTCFVIVTEIVGSKQRRI-VGIVIQMFFTLGIIILPG 254

Query: 176 IAYYLADWQWISVITIFPLIVGLIVAIFTPES 207
           IAY+   WQ I +    P  + L+     PES
Sbjct: 255 IAYFTPSWQGIQLAISLPSFLFLLYYWVVPES 286

Mediates potential-dependent transport of a variety of organic cations. May play a significant role in the disposition of cationic neurotoxins and neurotransmitters in the brain.

Rattus norvegicus (taxid: 10116)

>sp|Q9WTW5|S22A3_MOUSE Solute carrier family 22 member 3 OS=Mus musculus GN=Slc22a3 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 79/152 (51%), Gaps = 9/152 (5%)

Query: 60  NWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALT----P 115
           + VC  +  L +T++I  LG L G F L + ADRYGR+      +++S  GV +T     
Sbjct: 140 DLVCSNAWMLDLTQAILNLGFLAGAFTLGYAADRYGRLII----YLISCFGVGITGVVVA 195

Query: 116 FSKDVVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPW 175
           F+ +  +F + RFL GV    A++  ++IV E VG K R   +     +F+T+  + LP 
Sbjct: 196 FAPNFSVFVIFRFLQGVFGKGAWMTCFVIVTEIVGSKQRRI-VGIVIQMFFTLGIIILPG 254

Query: 176 IAYYLADWQWISVITIFPLIVGLIVAIFTPES 207
           IAY+   WQ I +    P  + L+     PES
Sbjct: 255 IAYFTPSWQGIQLAISLPSFLFLLYYWVVPES 286

Mediates potential-dependent transport of a variety of organic cations. May play a significant role in the disposition of cationic neurotoxins and neurotransmitters in the brain.

Mus musculus (taxid: 10090)

>sp|O76082|S22A5_HUMAN Solute carrier family 22 member 5 OS=Homo sapiens GN=SLC22A5 PE=1 SV=1

 Score = 69.7 bits (169), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 77/152 (50%), Gaps = 8/152 (5%)

Query: 60  NWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGR---ITAVLGSHV-VSFLGVALTP 115
           N VC+      +T S+FF+G LLG FI   ++DR+GR   +   +G     SFL +    
Sbjct: 133 NLVCEDDWKAPLTISLFFVGVLLGSFISGQLSDRFGRKNVLFVTMGMQTGFSFLQI---- 188

Query: 116 FSKDVVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPW 175
           FSK+  +F +   L G+G  + ++  +++  E +G   R    T    IFY    + LP 
Sbjct: 189 FSKNFEMFVVLFVLVGMGQISNYVAAFVLGTEILGKSVRIIFSTLGVCIFYAFGYMVLPL 248

Query: 176 IAYYLADWQWISVITIFPLIVGLIVAIFTPES 207
            AY++ DW+ + V    P ++ + +  F PES
Sbjct: 249 FAYFIRDWRMLLVALTMPGVLCVALWWFIPES 280

Sodium-ion dependent, high affinity carnitine transporter. Involved in the active cellular uptake of carnitine. Transports one sodium ion with one molecule of carnitine. Also transports organic cations such as tetraethylammonium (TEA) without the involvement of sodium. Also relative uptake activity ratio of carnitine to TEA is 11.3.

Homo sapiens (taxid: 9606)

>sp|A9CB25|S22A4_PAPAN Solute carrier family 22 member 4 OS=Papio anubis GN=SLC22A4 PE=3 SV=1

 Score = 67.8 bits (164), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 75/148 (50%)

Query: 60  NWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKD 119
           N VC+ +  + +T S+FF+G LLG F+   ++DR+GR   +  +  V      L  FS  
Sbjct: 133 NLVCEDNWKVPLTTSLFFVGVLLGSFVSGQLSDRFGRKNVLFATMAVQTGFSFLQIFSIS 192

Query: 120 VVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYY 179
             +F++   + G+G  + ++  +I+  E +G   R    T     F+ V  + LP  AY+
Sbjct: 193 WEMFTVLFLIVGMGQISNYVVAFILGTEILGKSVRIIFSTLGVCTFFAVGYMLLPLFAYF 252

Query: 180 LADWQWISVITIFPLIVGLIVAIFTPES 207
           + DW+ + +    P ++ + +  F PES
Sbjct: 253 IRDWRMLLLALTVPGVLCVPLWWFIPES 280

Sodium-ion dependent, low affinity carnitine transporter. Probably transports one sodium ion with one molecule of carnitine. Also transports organic cations such as tetraethylammonium (TEA) without the involvement of sodium. Relative uptake activity ratio of carnitine to TEA is 1.78. A key substrate of this transporter seems to be ergothioneine (ET).

Papio anubis (taxid: 9555)

>sp|O08966|S22A1_MOUSE Solute carrier family 22 member 1 OS=Mus musculus GN=Slc22a1 PE=2 SV=2

 Score = 67.8 bits (164), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 77/149 (51%), Gaps = 3/149 (2%)

Query: 60  NWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKD 119
           N VC  +  + + +S   LG  LG  ++ ++ADR+GR   +L + +V+ L   LT  + D
Sbjct: 140 NLVCGDAWKVDLFQSCVNLGFFLGSLVVGYIADRFGRKLCLLVTTLVTSLSGVLTAVAPD 199

Query: 120 VVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKW-RTFAMTFPFLIFYTVSEVALPWIAY 178
                L R L G+    +++  Y ++ E VG  + RT A+ +   + +TV  V L  +AY
Sbjct: 200 YTSMLLFRLLQGMVSKGSWVSGYTLITEFVGSGYRRTTAILYQ--VAFTVGLVGLAGVAY 257

Query: 179 YLADWQWISVITIFPLIVGLIVAIFTPES 207
            + DW+W+ +    P  + L+   F PES
Sbjct: 258 AIPDWRWLQLAVSLPTFLFLLYYWFVPES 286

Translocates a broad array of organic cations with various structures and molecular weights including the model compounds 1-methyl-4-phenylpyridinium (MPP), tetraethylammonium (TEA), N-1-methylnicotinamide (NMN), 4-(4-(dimethylamino)styryl)-N-methylpyridinium (ASP), the endogenous compounds choline, guanidine, histamine, epinephrine, adrenaline, noradrenaline and dopamine, and the drugs quinine, and metformin. The transport of organic cations is inhibited by a broad array of compounds like tetramethylammonium (TMA), cocaine, lidocaine, NMDA receptor antagonists, atropine, prazosin, cimetidine, TEA and NMN, guanidine, cimetidine, choline, procainamide, quinine, tetrabutylammonium, and tetrapentylammonium. Translocates organic cations in an electrogenic and pH-independent manner. Translocates organic cations across the plasma membrane in both directions. Transports the polyamines spermine and spermidine. Transports pramipexole across the basolateral membrane of the proximal tubular epithelial cells. The choline transport is activated by MMTS. Regulated by various intracellular signaling pathways including inhibition by protein kinase A activation, and endogenously activation by the calmodulin complex, the calmodulin-dependent kinase II and LCK tyrosine kinase.

Mus musculus (taxid: 10090)

>sp|Q9H015|S22A4_HUMAN Solute carrier family 22 member 4 OS=Homo sapiens GN=SLC22A4 PE=1 SV=3

 Score = 67.4 bits (163), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 75/148 (50%)

Query: 60  NWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKD 119
           N VC+ +  + +T S+FF+G LLG F+   ++DR+GR   +  +  V      L  FS  
Sbjct: 133 NLVCEDNWKVPLTTSLFFVGVLLGSFVSGQLSDRFGRKNVLFATMAVQTGFSFLQIFSIS 192

Query: 120 VVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYY 179
             +F++   + G+G  + ++  +I+  E +G   R    T     F+ V  + LP  AY+
Sbjct: 193 WEMFTVLFVIVGMGQISNYVVAFILGTEILGKSVRIIFSTLGVCTFFAVGYMLLPLFAYF 252

Query: 180 LADWQWISVITIFPLIVGLIVAIFTPES 207
           + DW+ + +    P ++ + +  F PES
Sbjct: 253 IRDWRMLLLALTVPGVLCVPLWWFIPES 280

Sodium-ion dependent, low affinity carnitine transporter. Probably transports one sodium ion with one molecule of carnitine. Also transports organic cations such as tetraethylammonium (TEA) without the involvement of sodium. Relative uptake activity ratio of carnitine to TEA is 1.78. A key substrate of this transporter seems to be ergothioneine (ET).

Homo sapiens (taxid: 9606)

>sp|Q63089|S22A1_RAT Solute carrier family 22 member 1 OS=Rattus norvegicus GN=Slc22a1 PE=1 SV=1

 Score = 66.2 bits (160), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 77/149 (51%), Gaps = 3/149 (2%)

Query: 60  NWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKD 119
           N VC  +  + + +S   LG  LG  ++ ++ADR+GR   +L + +V+ +   LT  + D
Sbjct: 140 NLVCGDAWKVDLFQSCVNLGFFLGSLVVGYIADRFGRKLCLLVTTLVTSVSGVLTAVAPD 199

Query: 120 VVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKW-RTFAMTFPFLIFYTVSEVALPWIAY 178
                L R L G+    +++  Y ++ E VG  + RT A+ +   + +TV  V L  +AY
Sbjct: 200 YTSMLLFRLLQGMVSKGSWVSGYTLITEFVGSGYRRTTAILYQ--MAFTVGLVGLAGVAY 257

Query: 179 YLADWQWISVITIFPLIVGLIVAIFTPES 207
            + DW+W+ +    P  + L+   F PES
Sbjct: 258 AIPDWRWLQLAVSLPTFLFLLYYWFVPES 286

Translocates a broad array of organic cations with various structures and molecular weights including the model compounds 1-methyl-4-phenylpyridinium (MPP), tetraethylammonium (TEA), N-1-methylnicotinamide (NMN), 4-(4-(dimethylamino)styryl)-N-methylpyridinium (ASP), the endogenous compounds choline, guanidine, histamine, epinephrine, adrenaline, noradrenaline and dopamine, and the drugs quinine, and metformin. The transport of organic cations is inhibited by a broad array of compounds like tetramethylammonium (TMA), cocaine, lidocaine, NMDA receptor antagonists, atropine, prazosin, cimetidine, TEA and NMN, guanidine, cimetidine, choline, procainamide, quinine, tetrabutylammonium, and tetrapentylammonium. Translocates organic cations in an electrogenic and pH-independent manner. Translocates organic cations across the plasma membrane in both directions. Transports the polyamines spermine and spermidine. Transports pramipexole across the basolateral membrane of the proximal tubular epithelial cells. The choline transport is activated by MMTS. Regulated by various intracellular signaling pathways including inhibition by protein kinase A activation, and endogenously activation by the calmodulin complex, the calmodulin-dependent kinase II and LCK tyrosine kinase.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	208
242010074	712	organic cation transporter, putative [Pe	0.716	0.209	0.469	6e-34
189235365	637	PREDICTED: similar to AGAP006609-PA [Tri	0.725	0.237	0.456	2e-33
158296157	720	AGAP006609-PA [Anopheles gambiae str. PE	0.711	0.205	0.459	2e-33
110763247	619	PREDICTED: organic cation transporter pr	0.879	0.295	0.382	2e-31
383856871	631	PREDICTED: organic cation transporter pr	0.711	0.234	0.452	2e-31
383851798	675	PREDICTED: organic cation transporter pr	0.937	0.288	0.358	4e-31
350420244	644	PREDICTED: organic cation transporter pr	0.711	0.229	0.452	5e-31
357624538	585	hypothetical protein KGM_08557 [Danaus p	0.716	0.254	0.422	9e-31
221330907	662	CG42269 [Drosophila melanogaster] gi|220	0.721	0.226	0.426	9e-31
307203492	642	Solute carrier family 22 member 5 [Harpe	0.716	0.232	0.402	1e-30

>gi|242010074|ref|XP_002425801.1| organic cation transporter, putative [Pediculus humanus corporis] gi|212509734|gb|EEB13063.1| organic cation transporter, putative [Pediculus humanus corporis]

 Score =  149 bits (377), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 70/149 (46%), Positives = 97/149 (65%)

Query: 60  NWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKD 119
           NWVC+ S+  + ++S+FF+GS++GG I  WVADRYGRI A++G++ +  +G   T F ++
Sbjct: 247 NWVCENSALPSASQSVFFVGSIVGGLIFGWVADRYGRIPALVGTNFMGLIGGLATAFVQN 306

Query: 120 VVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYY 179
              F   RFL G+   N F   YI+VLE VGPKWRTF       IF+T++ V LPW+A Y
Sbjct: 307 FWSFCFCRFLVGLSFDNCFTMMYILVLEYVGPKWRTFVANMSIAIFFTIATVILPWLALY 366

Query: 180 LADWQWISVITIFPLIVGLIVAIFTPESA 208
           +ADW+  S+IT  PLIV  +     PESA
Sbjct: 367 VADWRIFSIITSLPLIVACLTPWLIPESA 395

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189235365|ref|XP_967323.2| PREDICTED: similar to AGAP006609-PA [Tribolium castaneum] gi|270004239|gb|EFA00687.1| hypothetical protein TcasGA2_TC003564 [Tribolium castaneum]

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 69/151 (45%), Positives = 94/151 (62%)

Query: 58  RDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS 117
             NWVC+ S+     +SIFF G++LGG +  W+ADR+GRI A++G+++V F+G   T F 
Sbjct: 173 EQNWVCENSALPHTAQSIFFCGAILGGLVFGWIADRFGRIPALVGTNLVGFVGGIATAFC 232

Query: 118 KDVVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIA 177
                F L RFL G+   N F   YI+VLE VGPKWRTF       IF+T +   LPWIA
Sbjct: 233 SAFWTFCLCRFLVGMAFDNCFTMMYILVLEYVGPKWRTFVANMSIAIFFTFAASILPWIA 292

Query: 178 YYLADWQWISVITIFPLIVGLIVAIFTPESA 208
           YYLADW+ +  +T  PL++ ++     PESA
Sbjct: 293 YYLADWKMLCYVTSAPLVLAIVTPWLVPESA 323

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158296157|ref|XP_316638.4| AGAP006609-PA [Anopheles gambiae str. PEST] gi|157016379|gb|EAA11678.4| AGAP006609-PA [Anopheles gambiae str. PEST]

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 68/148 (45%), Positives = 93/148 (62%)

Query: 61  WVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDV 120
           WVCD +    + +SIFFLG+++GG +  W+ADRYGRI A+ G +++ F     T F  + 
Sbjct: 244 WVCDHAYLPTLAQSIFFLGAIVGGLLFGWIADRYGRIPALAGCNLIGFAAGVATAFVGNF 303

Query: 121 VLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL 180
             FSL RFL G    N F   YI+VLE VGPKWRTF       +F+T +  ALPWIAYYL
Sbjct: 304 WQFSLCRFLVGFAFDNCFTMMYILVLEYVGPKWRTFVANMSIALFFTTASCALPWIAYYL 363

Query: 181 ADWQWISVITIFPLIVGLIVAIFTPESA 208
           ADW+  +++T  PL + ++  +  PESA
Sbjct: 364 ADWKTFAIVTSAPLALAILTPLVVPESA 391

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110763247|ref|XP_394110.3| PREDICTED: organic cation transporter protein-like [Apis mellifera]

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 70/183 (38%), Positives = 105/183 (57%)

Query: 25  EEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGG 84
           E +E   K   ++ +E   +    D           WVCD +  + + +SIFF GS+LGG
Sbjct: 119 EAKEPDPKWPMKKCQEWHFKTSPFDVPYMSVAAEFGWVCDDAYKVTLAQSIFFSGSILGG 178

Query: 85  FILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYII 144
            I  W+ D+YGRI AV+ S+++ F+G   T +      F + RF+ GV   + F+F YI+
Sbjct: 179 LIFGWLGDKYGRIPAVIVSNLLGFIGGLSTIYIHTFWQFCVCRFIVGVSFDSTFVFAYIL 238

Query: 145 VLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLADWQWISVITIFPLIVGLIVAIFT 204
           VLE VGP WRTF     F +FYT   + +PW+AY++ADW+  ++ T  PL++ LI  +F 
Sbjct: 239 VLEYVGPGWRTFVAHVSFGLFYTFGAICMPWMAYFIADWRTFALATTVPLLLVLITPLFI 298

Query: 205 PES 207
           PES
Sbjct: 299 PES 301

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383856871|ref|XP_003703930.1| PREDICTED: organic cation transporter protein-like [Megachile rotundata]

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/148 (45%), Positives = 90/148 (60%)

Query: 61  WVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDV 120
           WVC+  S   I +SIFF+G++ GG I  W+AD+YGRI A++G+++  F+    T FS + 
Sbjct: 164 WVCEYDSLPTIAQSIFFIGAIFGGLIFGWIADQYGRIPALIGANLTGFVAGVATAFSNNF 223

Query: 121 VLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL 180
             F+L RF  G    N F   YI+VLE VGPKWRTF       IF+T +   LPWIAYYL
Sbjct: 224 WQFTLCRFFVGFAFDNCFTMMYILVLEYVGPKWRTFVANMSIAIFFTFAACILPWIAYYL 283

Query: 181 ADWQWISVITIFPLIVGLIVAIFTPESA 208
           ADW+   + T  PL++ +      PESA
Sbjct: 284 ADWRMTCIATSVPLVLSVAAPWLIPESA 311

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383851798|ref|XP_003701418.1| PREDICTED: organic cation transporter protein-like [Megachile rotundata]

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 72/201 (35%), Positives = 113/201 (56%), Gaps = 6/201 (2%)

Query: 7   CNCYGLIVPKSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRDNWVCDGS 66
           C  Y L V  +K+  R    +     +K  + E K   N   D          NWVC+ +
Sbjct: 105 CWIYDLPVETAKKANR---SDTSWPMKKCSDWEYKLSAN---DVPYMSYASEQNWVCEQA 158

Query: 67  SNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLS 126
             +   +SIFF+GS+ GG IL W+AD+YGR+  ++ S++++ +G   T F+K    F   
Sbjct: 159 YKVTFAQSIFFVGSIFGGLILGWLADKYGRVPVLVISNLIALIGSISTIFTKKFWQFCAC 218

Query: 127 RFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLADWQWI 186
           RF+ G+ + N F+  YI+VLE VGPKWRTFA    + IF+T+  +++PWIAY +A+W+  
Sbjct: 219 RFIVGMAYDNIFVIAYILVLEYVGPKWRTFAANMSYGIFFTLGAISVPWIAYEIANWRLF 278

Query: 187 SVITIFPLIVGLIVAIFTPES 207
           +++T  P  + +I     PES
Sbjct: 279 AIVTAAPFAIVIIAPFTIPES 299

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350420244|ref|XP_003492447.1| PREDICTED: organic cation transporter protein-like [Bombus impatiens]

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 67/148 (45%), Positives = 90/148 (60%)

Query: 61  WVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDV 120
           WVC   +   I +SIFF+G++ GG I  WVAD+YGRI A++G++++ FL    T F+   
Sbjct: 176 WVCQYDALPTIAQSIFFIGAIFGGLIFGWVADQYGRIPALIGANLMGFLAGVATAFTVSF 235

Query: 121 VLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL 180
             F+L RF  G    N F   YI+VLE VGPKWRTF       IF+T +   LPWIAYYL
Sbjct: 236 WQFTLCRFFVGFAFDNCFTMMYILVLEYVGPKWRTFVANMSIAIFFTFATCILPWIAYYL 295

Query: 181 ADWQWISVITIFPLIVGLIVAIFTPESA 208
           ADW+   ++T  PL++ +      PESA
Sbjct: 296 ADWRMTCIVTSVPLVLAVGTPWLIPESA 323

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357624538|gb|EHJ75271.1| hypothetical protein KGM_08557 [Danaus plexippus]

 Score =  139 bits (349), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 63/149 (42%), Positives = 93/149 (62%)

Query: 60  NWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKD 119
           +WVCD  +  A  +S+FF GS++GG I  WVAD++GR+ A+LG+++  FL    T F+  
Sbjct: 166 DWVCDRDNYAATAQSVFFCGSIIGGLIFGWVADKFGRVPAILGTNMAGFLAGVGTAFANS 225

Query: 120 VVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYY 179
              F L RFL G+ + N F+  YI+V+E VGPKWRTF       +++T +   LPWIA  
Sbjct: 226 FWSFCLCRFLVGLAYDNCFMVMYIVVVEYVGPKWRTFVANMSIAVYFTFAACLLPWIALA 285

Query: 180 LADWQWISVITIFPLIVGLIVAIFTPESA 208
           +ADW+  ++IT  PL++ +      PESA
Sbjct: 286 VADWKMYTLITSVPLVLAIFTPCVVPESA 314

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|221330907|ref|NP_648019.2| CG42269 [Drosophila melanogaster] gi|220902482|gb|AAF50706.2| CG42269 [Drosophila melanogaster]

 Score =  139 bits (349), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 64/150 (42%), Positives = 94/150 (62%)

Query: 59  DNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSK 118
            NWVCD ++     +SIFFLG+++GG +  WVADR+GRI A++G++++  L    T F  
Sbjct: 194 QNWVCDDAALPTYAQSIFFLGAIVGGLLFGWVADRFGRIPALIGTNMMGLLAGVGTAFVS 253

Query: 119 DVVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAY 178
           +   F++ RF  G    N F   YI+VLE VGPK+RTF       IF+T +   LPWIAY
Sbjct: 254 NFWEFAIMRFFVGFAFDNCFTMMYILVLEYVGPKYRTFVANMSIAIFFTGAACLLPWIAY 313

Query: 179 YLADWQWISVITIFPLIVGLIVAIFTPESA 208
           +LADW+ ++++T  PL++ +      PESA
Sbjct: 314 FLADWKLLAIVTSAPLLLAIFTPFVVPESA 343

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307203492|gb|EFN82543.1| Solute carrier family 22 member 5 [Harpegnathos saltator]

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 60/149 (40%), Positives = 96/149 (64%)

Query: 59  DNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSK 118
             WVCD +    +  SIFF+GS+ GGFI  W++D++GRI  ++G++++ F+G   T ++ 
Sbjct: 110 QGWVCDAAYKTTLAVSIFFIGSICGGFIFGWLSDKHGRIPVLIGTNMIGFIGGVSTIYAS 169

Query: 119 DVVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAY 178
               F L RF+ G+ + N F+  YI+VLE VGPKWRTFA    + IFY+++ + LPWIA+
Sbjct: 170 SFWQFCLCRFIVGIAYDNVFVVAYILVLEYVGPKWRTFAANMSYGIFYSLAAMCLPWIAH 229

Query: 179 YLADWQWISVITIFPLIVGLIVAIFTPES 207
            ++DW+  +++T  PL   ++     PES
Sbjct: 230 SISDWRTFALVTSVPLASVIVTPFIIPES 258

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	208
FB|FBgn0259164	662	CG42269 [Drosophila melanogast	0.716	0.225	0.375	5.2e-25
FB|FBgn0035647	706	CG10486 [Drosophila melanogast	0.711	0.209	0.304	2.7e-17
FB|FBgn0038720	585	CG6231 [Drosophila melanogaste	0.716	0.254	0.302	2.1e-15
FB|FBgn0038718	538	CG17752 [Drosophila melanogast	0.706	0.273	0.292	2.9e-15
FB|FBgn0035645	540	CG5592 [Drosophila melanogaste	0.711	0.274	0.270	8e-15
FB|FBgn0038716	540	CG7342 [Drosophila melanogaste	0.711	0.274	0.270	1.7e-14
FB|FBgn0038717	533	CG17751 [Drosophila melanogast	0.711	0.277	0.290	2.7e-14
FB|FBgn0038719	545	CG16727 [Drosophila melanogast	0.711	0.271	0.277	3.4e-13
FB|FBgn0038261	557	CG14856 [Drosophila melanogast	0.701	0.262	0.296	3.5e-13
FB|FBgn0038715	541	CG7333 [Drosophila melanogaste	0.711	0.273	0.263	1.5e-12

FB|FBgn0259164 CG42269 [Drosophila melanogaster (taxid:7227)]

 Score = 293 (108.2 bits), Expect = 5.2e-25, P = 5.2e-25
 Identities = 56/149 (37%), Positives = 82/149 (55%)

Query:    60 NWVCDGSSNLAITRXXXXXXXXXXXXXXXWVADRYGRITAVLGSHVVSFLGVALTPFSKD 119
             NWVCD ++     +               WVADR+GRI A++G++++  L    T F  +
Sbjct:   195 NWVCDDAALPTYAQSIFFLGAIVGGLLFGWVADRFGRIPALIGTNMMGLLAGVGTAFVSN 254

Query:   120 VVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYY 179
                F++ RF  G    N F   YI+VLE VGPK+RTF       IF+T +   LPWIAY+
Sbjct:   255 FWEFAIMRFFVGFAFDNCFTMMYILVLEYVGPKYRTFVANMSIAIFFTGAACLLPWIAYF 314

Query:   180 LADWQWISVITIFPLIVGLIVAIFTPESA 208
             LADW+ ++++T  PL++ +      PESA
Sbjct:   315 LADWKLLAIVTSAPLLLAIFTPFVVPESA 343

GO:0008513 "secondary active organic cation transmembrane transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0035647 CG10486 [Drosophila melanogaster (taxid:7227)]

 Score = 222 (83.2 bits), Expect = 2.7e-17, P = 2.7e-17
 Identities = 45/148 (30%), Positives = 68/148 (45%)

Query:    61 WVCDGSSNLAITRXXXXXXXXXXXXXXXWVADRYGRITAVLGSHVVSFLGVALTPFSKDV 120
             W+CD        +                 AD  GR+ A++ S  ++ +G   T  S D 
Sbjct:   223 WLCDDDKYATYAQIIFFLGSILGGLAYGHFADHCGRVAALVSSCFLALVGSLATSMSTDF 282

Query:   121 VLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL 180
               F++SRFL G  +   F   YI+VLE VGPK+RT        +FY+   + +PWIA   
Sbjct:   283 FTFAISRFLVGASYDTCFTMVYILVLEYVGPKYRTLVANLSLALFYSPFTMVMPWIALSA 342

Query:   181 ADWQWISVITIFPLIVGLIVAIFTPESA 208
              +W+  S  T  P+++ +      PESA
Sbjct:   343 GNWRRFSSFTSLPIVLAMFSFCLLPESA 370

GO:0008513 "secondary active organic cation transmembrane transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0038720 CG6231 [Drosophila melanogaster (taxid:7227)]

 Score = 203 (76.5 bits), Expect = 2.1e-15, P = 2.1e-15
 Identities = 45/149 (30%), Positives = 69/149 (46%)

Query:    60 NWVCDGSSNLAITRXXXXXXXXXXXXXXXWVADRYGRITAVLGSHVVSFLGVALTPFSKD 119
             NWVCD +    I +                ++D+ GR+ A++ S+   F G   T F+K 
Sbjct:   111 NWVCDSAYKARIGQSLFFIGSVVGTLFYGLLSDKIGRVPALILSNFCGFAGDFSTIFTKS 170

Query:   120 VVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYY 179
             V  F+L RF+ G+     F   YIIVLE + P  RT  +     +FY +  V  PW+A  
Sbjct:   171 VATFTLCRFIPGLAADTNFYLMYIIVLEYIRPSMRTLGLNMAVGLFYCLGLVFTPWLAVL 230

Query:   180 LADWQWISVITIFPLIVGLIVAIFTPESA 208
             +  WQ     T  P+++ ++      ESA
Sbjct:   231 VGHWQIYLACTSLPILLVVLYYFVVQESA 259

GO:0008513 "secondary active organic cation transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

FB|FBgn0038718 CG17752 [Drosophila melanogaster (taxid:7227)]

 Score = 201 (75.8 bits), Expect = 2.9e-15, P = 2.9e-15
 Identities = 43/147 (29%), Positives = 72/147 (48%)

Query:    61 WVCDGSSNLAITRXXXXXXXXXXXXXXXWVADRYGRITAVLGSHVVSFLGVALTPFSKDV 120
             WVCD +  LA+ +               ++ADR GR+ A + S +    G   T F   +
Sbjct:   103 WVCDDAYKLAVGQSFFFIGSALGSIFFGYLADRIGRLPACVLSTLTGASGDFFTSFVGSL 162

Query:   121 VLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL 180
              +FS +RF++G+     ++  YI+V E + P+ RTF +     +FY++  +  PWIA +L
Sbjct:   163 PMFSFTRFISGLSMDTQYVLMYILVFEYLSPQHRTFGLNIILGVFYSIGLMISPWIAIWL 222

Query:   181 ADWQWISVITIFPLIVGLIVAIFTPES 207
              +W+        P +  LI  +F  ES
Sbjct:   223 GNWRSYLWAASLPALGMLIFPLFLHES 249

GO:0008513 "secondary active organic cation transmembrane transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0035645 CG5592 [Drosophila melanogaster (taxid:7227)]

 Score = 197 (74.4 bits), Expect = 8.0e-15, P = 8.0e-15
 Identities = 40/148 (27%), Positives = 72/148 (48%)

Query:    60 NWVCDGSSNLAITRXXXXXXXXXXXXXXXWVADRYGRITAVLGSHVVSFLGVALTPFSKD 119
             NWVCD       +                ++ D  GR+ A+  ++  S +G  ++   KD
Sbjct:   130 NWVCDKRDFGTYSVVVYFVGCIVGCLCFGFITDHSGRLPALFLANSCSMIGGCVSVVCKD 189

Query:   120 VVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYY 179
                F+ SRF+ G+     F+  YI+ LE VG K+RT         F+T+    LPW+AY 
Sbjct:   190 FPCFAASRFVAGLSMNYCFVPIYILTLENVGIKYRTLVGNLALTFFFTLGACLLPWLAYV 249

Query:   180 LADWQWISVITIFPLIVGLIVAIFTPES 207
             +++W+  +++   P++  ++ ++  PES
Sbjct:   250 ISNWRHYAMVVALPIVFMILTSLLAPES 277

GO:0008513 "secondary active organic cation transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

FB|FBgn0038716 CG7342 [Drosophila melanogaster (taxid:7227)]

 Score = 194 (73.4 bits), Expect = 1.7e-14, P = 1.7e-14
 Identities = 40/148 (27%), Positives = 74/148 (50%)

Query:    60 NWVCDGSSNLAITRXXXXXXXXXXXXXXXWVADRYGRITAVLGSHVVSFLGVALTPFSKD 119
             +WVC  +  L + +               ++AD  GR+  ++ +++++  G  LT +S +
Sbjct:    98 DWVCADAWKLTLGQSMFFVGSVVGSMVLGYLADVVGRLPILIVANLIAMTGNLLTIWSTN 157

Query:   120 VVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYY 179
             V LF + R ++G+   + F+  YI+V+E + P  RT  ++     FY +  +A PWIA  
Sbjct:   158 VTLFCMFRMISGIATDSNFVMMYILVMEYMRPSVRTLGLSICIGFFYCLGSMAAPWIAVL 217

Query:   180 LADWQWISVITIFPLIVGLIVAIFTPES 207
             +  W+   + T  PL+V     +  PES
Sbjct:   218 MRSWRGFLLTTSLPLLVVPFFYLIVPES 245

GO:0008513 "secondary active organic cation transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

FB|FBgn0038717 CG17751 [Drosophila melanogaster (taxid:7227)]

 Score = 192 (72.6 bits), Expect = 2.7e-14, P = 2.7e-14
 Identities = 43/148 (29%), Positives = 71/148 (47%)

Query:    61 WVCDGSSNLAITRXXXXXXXXXXXXXXXWVADRYGRITAVLGSHVVSFLGVALTPFSKDV 120
             WVCD +  LA+ +               ++ADR GR+ A + S +    G   T F   +
Sbjct:    96 WVCDDAYKLAVGQSFFFIGSALGSIFFGYLADRIGRLPACVLSTLTGASGDFFTSFVGSL 155

Query:   121 VLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL 180
               FS +RF++G+     ++  YI+V E + P+ RTF +     +FY V  +  PWIA ++
Sbjct:   156 PWFSFTRFISGLFMDTQYVLMYILVFEYLSPQHRTFGLNIILGVFYCVGLMISPWIAIWV 215

Query:   181 ADWQWISVITIFPLIVGLIVAIFTPESA 208
              +W+        P +  L+  +F  ESA
Sbjct:   216 TNWRNYLWAASLPALGMLLFPVFLHESA 243

GO:0008513 "secondary active organic cation transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

FB|FBgn0038719 CG16727 [Drosophila melanogaster (taxid:7227)]

 Score = 182 (69.1 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 41/148 (27%), Positives = 69/148 (46%)

Query:    61 WVCDGSSNLAITRXXXXXXXXXXXXXXXWVADRYGRITAVLGSHVVSFLGVALTPFSKDV 120
             WVCD S   A+ +               +++D  GR+ A+L + +    G  +T F   +
Sbjct:   112 WVCDKSHQPAVGQSFFFLGSVVGTISFGFLSDHIGRLPAMLMAALSGATGDFITSFVHTL 171

Query:   121 VLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL 180
               F+ SRF++G+     +   YI+V E + PK RTF +     +FY    +  PWIA ++
Sbjct:   172 PWFAFSRFVSGLSTDTMYYLMYILVFEYLSPKRRTFGLNIILAVFYCFGLMTSPWIAMWI 231

Query:   181 ADWQWISVITIFPLIVGLIVAIFTPESA 208
              +W+    +   P +  LI  +   ESA
Sbjct:   232 GNWRRYLWLASLPALGVLIYPLLICESA 259

GO:0015101 "organic cation transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

FB|FBgn0038261 CG14856 [Drosophila melanogaster (taxid:7227)]

 Score = 182 (69.1 bits), Expect = 3.5e-13, P = 3.5e-13
 Identities = 45/152 (29%), Positives = 73/152 (48%)

Query:    60 NWVCDGSSNLAITRXXXXXXXXXXXXXXXWVADRYGRITAVLGSHVVSFLGVALTPFSKD 119
             NWVCD +    + +                + DR GRI AV+ ++   FLG + T F++ 
Sbjct:   115 NWVCDDAYKARVGQSLFFVGSMCGTLLFGLLGDRIGRIKAVVLANCCGFLGDSATIFAET 174

Query:   120 VVLFSLSRFLTGVG-HFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAY 178
             ++ FS SRF++G+    N+++ + I+VLE V P  R+  +     +FY +  +   W   
Sbjct:   175 LLTFSASRFVSGLAAEANSYLMF-ILVLEYVSPTMRSVGLNLTMCVFYGLGMICASWQGV 233

Query:   179 YLADWQWISVITIFP--LIVGLIVAIFTPESA 208
             +L  W+   V T  P  L+ G    I   ESA
Sbjct:   234 WLGSWRSFMVWTALPQLLVTGFYFLI--QESA 263

GO:0008513 "secondary active organic cation transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

FB|FBgn0038715 CG7333 [Drosophila melanogaster (taxid:7227)]

 Score = 176 (67.0 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 39/148 (26%), Positives = 69/148 (46%)

Query:    61 WVCDGSSNLAITRXXXXXXXXXXXXXXXWVADRYGRITAVLGSHVVSFLGVALTPFSKDV 120
             WVCD S + A+ +               +++D+ GR+ ++L + +    G  +T F   +
Sbjct:   113 WVCDKSHHPAVGQSFFFMGSVVGTIIFGYLSDQVGRLPSLLMATLCGATGDFITSFVHTL 172

Query:   121 VLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL 180
               F+ SRF++G+     +   YI+V E + PK RTF +     +FY    +  PW A ++
Sbjct:   173 PWFAFSRFMSGLSTDTMYYLMYILVFEYLSPKSRTFGLNIILAVFYCFGLMTSPWAAIWI 232

Query:   181 ADWQWISVITIFPLIVGLIVAIFTPESA 208
              +W+    +   P +  LI      ESA
Sbjct:   233 GNWRRYLWLASLPALGVLIYPFLICESA 260

GO:0008513 "secondary active organic cation transmembrane transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	208
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	3e-24
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	3e-17
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	1e-13
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	2e-12
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	4e-11
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	6e-09
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	6e-07
COG0477	338	COG0477, ProP, Permeases of the major facilitator	3e-06
TIGR00891	405	TIGR00891, 2A0112, putative sialic acid transporte	6e-06
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	8e-05
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	9e-05
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	1e-04
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	1e-04
pfam14265	125	pfam14265, DUF4355, Domain of unknown function (DU	2e-04
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	2e-04
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	3e-04
pfam02029	431	pfam02029, Caldesmon, Caldesmon	7e-04
pfam08597	242	pfam08597, eIF3_subunit, Translation initiation fa	7e-04
pfam13904	261	pfam13904, DUF4207, Domain of unknown function (DU	8e-04
pfam06658	142	pfam06658, DUF1168, Protein of unknown function (D	8e-04
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	0.001
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	0.001
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	0.002
pfam13868	349	pfam13868, Trichoplein, Tumour suppressor, Mitosta	0.002
pfam09507	427	pfam09507, CDC27, DNA polymerase subunit Cdc27	0.003
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	0.003
pfam13025	70	pfam13025, DUF3886, Protein of unknown function (D	0.003
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	0.004
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	0.004
pfam08208	193	pfam08208, RNA_polI_A34, DNA-directed RNA polymera	0.004
pfam09756	189	pfam09756, DDRGK, DDRGK domain	0.004
PRK10473	392	PRK10473, PRK10473, multidrug efflux system protei	0.004
pfam13300	88	pfam13300, DUF4078, Domain of unknown function (DU	0.004

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 98.9 bits (247), Expect = 3e-24
 Identities = 45/149 (30%), Positives = 84/149 (56%), Gaps = 1/149 (0%)

Query: 60  NWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKD 119
           + VC+ +  + +T+S FF+G LLG F+  +++DR+GR   +L S +V+ +   LT FS +
Sbjct: 120 DLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPN 179

Query: 120 VVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYY 179
             +F + R L G+G    ++   ++  E +  K R    T    +F+++  V LP +AY+
Sbjct: 180 YTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQ-VFFSLGLVLLPLVAYF 238

Query: 180 LADWQWISVITIFPLIVGLIVAIFTPESA 208
           + DW+W+ +    P  +  +++ F PES 
Sbjct: 239 IPDWRWLQLAVSLPTFLFFLLSWFVPESP 267

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 78.1 bits (193), Expect = 3e-17
 Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 1/130 (0%)

Query: 74  SIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVG 133
           S F LG  LG  +  +++DR+GR   +L   ++  LG  L  F+  + L  + RFL G+G
Sbjct: 41  SAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLG 100

Query: 134 HFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLADWQWISVITIFP 193
               +     ++ E   PK R  A+   F   + +  +  P +   LA+      + +  
Sbjct: 101 GGALYPAAAALIAEWFPPKERGRALGL-FSAGFGLGALLGPLLGGLLAESLGWRWLFLIL 159

Query: 194 LIVGLIVAIF 203
            I+GL++A+ 
Sbjct: 160 AILGLLLALL 169

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 68.2 bits (167), Expect = 1e-13
 Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 7/140 (5%)

Query: 74  SIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVG 133
           S   +G   G      +ADR GR   +L S ++  +   L   + +V    + RFL G+G
Sbjct: 59  SAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLG 118

Query: 134 HFNAFIFYYIIVLECVGPKWRTFAMTFPFL---IFYTVSEVALPW-IAYYLADWQWISVI 189
                     +V E    ++R  A+   F    I   V      W I  +   W+ +  +
Sbjct: 119 LGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVF--GWRSLFYV 176

Query: 190 -TIFPLIVGLIVAIFTPESA 208
             I PL++ L++  F PES 
Sbjct: 177 GGIAPLLLLLLLMRFLPESI 196

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 64.4 bits (157), Expect = 2e-12
 Identities = 28/133 (21%), Positives = 55/133 (41%), Gaps = 4/133 (3%)

Query: 74  SIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVG 133
           + F LG  L   +   ++DR+GR   +L   ++  LG+ L  F+  + L  + R L G+G
Sbjct: 39  TAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLG 98

Query: 134 HFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLAD---WQWISVIT 190
               F     ++ +   P+ R  A+       + +     P +   LA    W+   +I 
Sbjct: 99  GGALFPAAAALIADWFPPEERGRALGL-LSAGFGLGAALGPLLGGLLASLFGWRAAFLIL 157

Query: 191 IFPLIVGLIVAIF 203
               ++  ++A  
Sbjct: 158 AILALLAAVLAAL 170

Length = 346

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 60.8 bits (148), Expect = 4e-11
 Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 2/132 (1%)

Query: 74  SIFFLGSLLGGFILSWVADRYGRITAVL-GSHVVSFLGVALTPFSKDVVLFSLSRFLTGV 132
           S+F LG +LG  +   ++DR GR   +L    +++ LG+ L   +  + L  ++  L G 
Sbjct: 218 SLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGF 277

Query: 133 GHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLADWQWISVITIF 192
           G   AF     +  E   P+ R  A    F  F ++     P +A  L D      + + 
Sbjct: 278 GLGFAFPALLTLASELAPPEARGTASGL-FNTFGSLGGALGPLLAGLLLDTGGYGGVFLI 336

Query: 193 PLIVGLIVAIFT 204
              + L+ A+  
Sbjct: 337 LAALALLAALLL 348

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 54.6 bits (132), Expect = 6e-09
 Identities = 37/151 (24%), Positives = 61/151 (40%), Gaps = 11/151 (7%)

Query: 66  SSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKD--VVLF 123
           +    +  SIF +G L+G      + DR+GR  ++L  +V+  +G  L  F+K     + 
Sbjct: 45  TVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYML 104

Query: 124 SLSRFLTG--VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYT---VSEVALPWIAY 178
            + R + G  VG  +  +  YI   E    K R    +   L       V+ +    +  
Sbjct: 105 IVGRVIVGLGVGGISVLVPMYIS--EIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNK 162

Query: 179 YLADWQWI--SVITIFPLIVGLIVAIFTPES 207
           Y     W     +   P I+ LI  +F PES
Sbjct: 163 YSNSDGWRIPLGLQFVPAILLLIGLLFLPES 193

Length = 449

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 48.8 bits (117), Expect = 6e-07
 Identities = 40/145 (27%), Positives = 65/145 (44%), Gaps = 17/145 (11%)

Query: 74  SIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGV--ALTPFSKDVVLFSLSRFLTG 131
           S   LG L G  +   +ADR GR   ++ S  V+  G+    T  + D     ++R LTG
Sbjct: 57  SAGILGLLPGALLGGRLADRIGRKRILIVS--VALFGLFSLATAQAWDFPSLLVARLLTG 114

Query: 132 VGHFNAFIFYYIIVLECVGPKWRTFAMTF-----PF--LIFYTVSEVALPWIAYYLADWQ 184
           VG   A      +  E VGP+ R  A++      PF   +    S + +  +A   A W+
Sbjct: 115 VGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGAL---ASVIGV--LAAGDAAWR 169

Query: 185 WISVI-TIFPLIVGLIVAIFTPESA 208
            I  +  + PL++  ++  + PES 
Sbjct: 170 HIFYVGGVGPLLLVPLLMRWLPESR 194

Length = 406

>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

 Score = 46.2 bits (108), Expect = 3e-06
 Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 8/138 (5%)

Query: 74  SIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPF--SKDVVLFSLSRFLTG 131
           S FFLG  +G  +   + DRYGR   ++   ++  LG  L     +  + L  + R L G
Sbjct: 46  SAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQG 105

Query: 132 VGHFNAFIFYYIIVLECVGP-KWRTFAMTFPFLIFYTVSEVALPWIAYYLAD-----WQW 185
           +G          ++ E       R  A+    L    +     P +A  L       W+ 
Sbjct: 106 LGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRA 165

Query: 186 ISVITIFPLIVGLIVAIF 203
             ++     ++ LI+ + 
Sbjct: 166 AFLLAALLGLLLLILVLL 183

Length = 338

>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter

 Score = 45.6 bits (108), Expect = 6e-06
 Identities = 27/129 (20%), Positives = 48/129 (37%), Gaps = 4/129 (3%)

Query: 83  GGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYY 142
           G  +     DRYGR   ++ S V+   G     F+   +   ++R + G+G    +    
Sbjct: 63  GALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSA 122

Query: 143 IIVLECVGPKWRTFAMTFPFLIF---YTVSEVALPWIAYYLAD-WQWISVITIFPLIVGL 198
             V+E      R  A       +     V+      +     D W+ +  I+I P+I  L
Sbjct: 123 AYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFAL 182

Query: 199 IVAIFTPES 207
            +    PE+
Sbjct: 183 WLRKNIPEA 191

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 42.0 bits (99), Expect = 8e-05
 Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 3/90 (3%)

Query: 74  SIFFLGSLLGGFILSWVADRYG---RITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLT 130
            +  L   +G  +L  ++DR G   R+   L   +++ LG+AL   ++  +   ++  L 
Sbjct: 244 GLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLL 303

Query: 131 GVGHFNAFIFYYIIVLECVGPKWRTFAMTF 160
           G G    F     +V +    + R  A   
Sbjct: 304 GFGAGLVFPALNALVSDLAPKEERGTASGL 333

Length = 346

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 42.3 bits (99), Expect = 9e-05
 Identities = 37/164 (22%), Positives = 59/164 (35%), Gaps = 21/164 (12%)

Query: 62  VCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVV 121
           +C   S   +   I +LG ++G F    +AD+ GR   +L    V+      + F +   
Sbjct: 197 LCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYG 256

Query: 122 LFSLSRFLTGVGHFNAF--IFYY---IIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWI 176
            F   R L+G G   A   +F Y    +  E  G       M   F +   +   A+ W 
Sbjct: 257 FFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCM---FWMIGGIYAAAMAWA 313

Query: 177 -------------AYYLADWQWISVITIFPLIVGLIVAIFTPES 207
                        AY    W+   ++  FP +  +    F PES
Sbjct: 314 IIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPES 357

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 30/141 (21%), Positives = 56/141 (39%), Gaps = 9/141 (6%)

Query: 74  SIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVG 133
           + + LG  LG  +L+ +  R  R   +LG   +  +   L+  +    +  L+R L G+ 
Sbjct: 55  TAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLA 114

Query: 134 HFNAFIFYYIIVLECVGPKWRTFAMTFPFLIF--YTVSEVALPWIAYYLAD---WQWI-S 187
           H   +     +    V P  R  A+    L+F   T++ V    +  +L     W+    
Sbjct: 115 HGVFWSIAAALAARLVPPGKRGRALA---LVFTGLTLATVLGVPLGTFLGQLFGWRATFL 171

Query: 188 VITIFPLIVGLIVAIFTPESA 208
            I +  L+  L++    P S 
Sbjct: 172 AIAVLALLALLLLWKLLPPSE 192

Length = 394

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 42.0 bits (98), Expect = 1e-04
 Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 5/63 (7%)

Query: 2   FDRGNCNC-----YGLIVPKSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRR 56
            DRG  +C     Y   +  SK   +++E  E+ K+E +++  E++ER +E ++ R R R
Sbjct: 555 LDRGYNSCARTDLYFTPLASSKLAKKREEAVEKAKREAEQKAREEREREKEKEKERERER 614

Query: 57  RRD 59
            R+
Sbjct: 615 ERE 617

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355)

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 5/50 (10%)

Query: 16 KSKREGRQKEEEEEGKKEKKEEEEEK-----KERNEELDRRRRRRRRRDN 60
          K+K E +Q+E++ E +K  K   EEK     ++  +EL+       RR+ 
Sbjct: 21 KAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARREL 70

This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 180 and 214 amino acids in length. Length = 125

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 30/139 (21%), Positives = 52/139 (37%), Gaps = 7/139 (5%)

Query: 73  RSIFFLGSLLGGFILSWVADRYG-RITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTG 131
            S F  G ++G F   W+ DR+G R T  +   +       L  F+   V   + R L G
Sbjct: 35  FSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVF-TGLQAFAGAYVSLYILRVLLG 93

Query: 132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISV 188
                 F    +IV        R  A++        +  +    +  ++     WQW  +
Sbjct: 94  AAEAPFFPGIILIVASWFPASERATAVSIFNSAQG-LGGIIGGPLVGWILIHFSWQWAFI 152

Query: 189 IT-IFPLIVGLIVAIFTPE 206
           I  +  +I G++   F P+
Sbjct: 153 IEGVLGIIWGVLWLKFIPD 171

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 3/79 (3%)

Query: 58  RDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVAL---T 114
             N     SS   +  SIF +G  +G     W++DR+GR  ++L   ++  +G  L    
Sbjct: 62  SANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLA 121

Query: 115 PFSKDVVLFSLSRFLTGVG 133
            F+  V +  + R L G+G
Sbjct: 122 AFALSVEMLIVGRVLLGIG 140

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|202096 pfam02029, Caldesmon, Caldesmon

 Score = 39.3 bits (91), Expect = 7e-04
 Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 3/46 (6%)

Query: 16  KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRR--RRRRRRRD 59
           K KRE R+K  EEE ++ +K+EE ++K R EE  RR      RRR 
Sbjct: 220 KKKREERRKVLEEE-EQRRKQEEADRKSREEEEKRRLKEEIERRRA 264

Length = 431

>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3 subunit

 Score = 38.9 bits (91), Expect = 7e-04
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 15  PKSKREGRQK-EEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRR 58
            K+K+  + K EE+E+ K+EK+E+   + E +   D    + R R
Sbjct: 56  AKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKLRLR 100

This is a family of proteins which are subunits of the eukaryotic translation initiation factor 3 (eIF3). In yeast it is called Hcr1. The Saccharomyces cerevisiae protein eIF3j (HCR1) has been shown to be required for processing of 20S pre-rRNA and binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p. Length = 242

>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207)

 Score = 38.9 bits (91), Expect = 8e-04
 Identities = 13/32 (40%), Positives = 26/32 (81%)

Query: 16  KSKREGRQKEEEEEGKKEKKEEEEEKKERNEE 47
           K K++ +++EEE   +++K++EEEE+K++ EE
Sbjct: 191 KLKQQQQKREEERRKQRKKQQEEEERKQKAEE 222

This family is found in eukaryotes; it has several conserved tryptophan residues. The function is not known. Length = 261

>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168)

 Score = 38.1 bits (89), Expect = 8e-04
 Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 3/40 (7%)

Query: 22 RQKEEEEEGKKEKKEEE-EEKKERNEELD--RRRRRRRRR 58
          R +  +E+ KKE ++EE ++K+E  +  D  +  ++R +R
Sbjct: 51 RLELMDEKWKKETEDEEFQQKREEKKRKDEEKTAKKRAKR 90

This family consists of several hypothetical eukaryotic proteins of unknown function. Length = 142

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 38.7 bits (90), Expect = 0.001
 Identities = 11/46 (23%), Positives = 29/46 (63%)

Query: 15  PKSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRDN 60
            + K + + KEE+++ K++ KEE +++K + E  ++R  + + ++ 
Sbjct: 105 EEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEK 150

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 38.4 bits (89), Expect = 0.001
 Identities = 19/57 (33%), Positives = 34/57 (59%)

Query: 77  FLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVG 133
           F+G   GG +   +AD++GR   ++ S V   +G  L+  +  V++ +LSRF+ G+G
Sbjct: 63  FIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMG 119

Length = 426

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 26/139 (18%), Positives = 58/139 (41%), Gaps = 2/139 (1%)

Query: 69  LAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS-KDVVLFSLSR 127
           L +  + F LG+LLG  +   +A+  G     L   ++  L   L  F  + ++L +L+ 
Sbjct: 125 LGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLRLLLLLALAF 184

Query: 128 FLTGVGHFNAFIFYYIIVLECVG-PKWRTFAMTFPFLIFYTVSEVALPWIAYYLADWQWI 186
           FL   G++    +  + + E +G        +   F +   +  +    ++  L   + +
Sbjct: 185 FLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLL 244

Query: 187 SVITIFPLIVGLIVAIFTP 205
            +I +    +GL++    P
Sbjct: 245 LLIGLLLAALGLLLLALAP 263

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 5/44 (11%)

Query: 22  RQKEEEEEGKKEKKEEEEEKKERN-----EELDRRRRRRRRRDN 60
           R+K E EE ++ ++ E +E+KER       + +     R   D 
Sbjct: 160 REKAEREEEREAERRERKEEKEREVARLRAQQEEAEDEREELDE 203

Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349

>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27

 Score = 37.5 bits (87), Expect = 0.003
 Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 13  IVPKSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRR 58
           IVP+S  E  ++ EE E     K+EEE K+E     D  RRR RRR
Sbjct: 313 IVPESPVE-EEESEEPEPPPLPKKEEE-KEEVTVSPDGGRRRGRRR 356

This protein forms the C subunit of DNA polymerase delta. It carries the essential residues for binding to the Pol1 subunit of polymerase alpha, from residues 293-332, which are characterized by the motif D--G--VT, referred to as the DPIM motif. The first 160 residues of the protein form the minimal domain for binding to the B subunit, Cdc1, of polymerase delta, the final 10 C-terminal residues, 362-372, being the DNA sliding clamp, PCNA, binding motif. Length = 427

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 36.1 bits (84), Expect = 0.003
 Identities = 31/142 (21%), Positives = 57/142 (40%), Gaps = 9/142 (6%)

Query: 74  SIFFLGSLLGGFILS----WVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFL 129
            +   G  LG  I S     + DR+GR   +L    +  L  A+   S ++ +  ++RFL
Sbjct: 1   GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60

Query: 130 TGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLAD---WQWI 186
            G G   A +    ++ +   P+ R  A+         +  +  P +   LA    W+  
Sbjct: 61  QGFGAAFALVAGAALIADIYPPEERGVALGL-MSAGIALGPLLGPPLGGVLAQFLGWRAP 119

Query: 187 SVI-TIFPLIVGLIVAIFTPES 207
            +   I  L   +++A   PE+
Sbjct: 120 FLFLAILALAAFILLAFLLPET 141

Length = 141

>gnl|CDD|205206 pfam13025, DUF3886, Protein of unknown function (DUF3886)

 Score = 34.6 bits (80), Expect = 0.003
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 31 KKEKKEEEEEKKERNEELDRRRRRRRRRDN 60
          KKE K EEE+++E  E   R  R+ R ++ 
Sbjct: 26 KKELKAEEEKREEEEEARKREERKEREKNK 55

This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length. There are two completely conserved L residues that may be functionally important. Length = 70

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 37.4 bits (86), Expect = 0.004
 Identities = 15/49 (30%), Positives = 26/49 (53%)

Query: 18  KREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRDNWVCDGS 66
           KRE   ++ + E +++ +EE E +KE+ +E +R R R   R       S
Sbjct: 580 KREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAKASSSS 628

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 37.6 bits (87), Expect = 0.004
 Identities = 12/49 (24%), Positives = 29/49 (59%), Gaps = 3/49 (6%)

Query: 15  PKSKRE---GRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRDN 60
            +S +E    +++ +EE+ KK++K +EE K  + +E  + +R  + ++ 
Sbjct: 100 NESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEK 148

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 11/42 (26%), Positives = 30/42 (71%)

Query: 16  KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRR 57
           + K+E ++K+E ++ KKEKK+++E+  E      ++++++++
Sbjct: 152 EEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKKK 193

5. This is a family of proteins conserved from yeasts to human. Subunit A34.5 of RNA polymerase I is a non-essential subunit which is thought to help Pol I overcome topological constraints imposed on ribosomal DNA during the process of transcription. Length = 193

>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 13/40 (32%), Positives = 28/40 (70%)

Query: 19 REGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRR 58
           E ++ EE+ EG+++++EE EE++E+ +E + R+ R  + 
Sbjct: 29 EERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQA 68

This is a family of proteins of approximately 300 residues, found in plants and vertebrates. They contain a highly conserved DDRGK motif. Length = 189

>gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL; Provisional

 Score = 36.9 bits (86), Expect = 0.004
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 8/69 (11%)

Query: 69  LAITRSIFFLGS----LLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFS 124
           L I  S++  G     L  G     +ADR GR    +    +  +   L   ++   LF 
Sbjct: 40  LHIAFSVYLAGMAAAMLFAG----KIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFL 95

Query: 125 LSRFLTGVG 133
             RFL G+G
Sbjct: 96  AGRFLQGIG 104

Length = 392

>gnl|CDD|205480 pfam13300, DUF4078, Domain of unknown function (DUF4078)

 Score = 34.9 bits (81), Expect = 0.004
 Identities = 18/42 (42%), Positives = 27/42 (64%)

Query: 17 SKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRR 58
          SK E  +KE+ EE +K ++E E E+KER E  ++R+R    R
Sbjct: 39 SKDEEERKEQMEELEKAREETERERKEREERKEKRKRAIEER 80

This family is found from fungi to humans, but its exact function is not known. Length = 88

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	208
TIGR00898	505	2A0119 cation transport protein.	99.89
KOG0255|consensus	521		99.87
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.87
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.87
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.85
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.84
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.83
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.83
PRK03545	390	putative arabinose transporter; Provisional	99.83
PRK10642	490	proline/glycine betaine transporter; Provisional	99.83
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.83
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.83
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.82
TIGR00891	405	2A0112 putative sialic acid transporter.	99.81
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.8
PRK10091	382	MFS transport protein AraJ; Provisional	99.8
KOG0569|consensus	485		99.8
PRK11663	434	regulatory protein UhpC; Provisional	99.8
PRK12307	426	putative sialic acid transporter; Provisional	99.8
KOG0254|consensus	513		99.79
TIGR00893	399	2A0114 d-galactonate transporter.	99.79
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.79
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.78
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.78
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.78
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.78
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.78
PRK09952	438	shikimate transporter; Provisional	99.77
PRK09705	393	cynX putative cyanate transporter; Provisional	99.77
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.77
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.76
TIGR00900	365	2A0121 H+ Antiporter protein.	99.76
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.76
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.76
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.75
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.75
PRK03893	496	putative sialic acid transporter; Provisional	99.75
KOG2615|consensus	451		99.75
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.75
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.74
PRK12382	392	putative transporter; Provisional	99.74
PRK11043	401	putative transporter; Provisional	99.74
KOG1330|consensus	493		99.73
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.73
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.73
PRK10504	471	putative transporter; Provisional	99.73
PRK03699	394	putative transporter; Provisional	99.73
TIGR00895	398	2A0115 benzoate transport.	99.73
PLN00028	476	nitrate transmembrane transporter; Provisional	99.73
PRK15075	434	citrate-proton symporter; Provisional	99.72
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.72
PRK05122	399	major facilitator superfamily transporter; Provisi	99.72
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.72
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.71
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.71
KOG2532|consensus	466		99.71
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.71
PRK10054	395	putative transporter; Provisional	99.7
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.7
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.7
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.69
KOG2533|consensus	495		99.69
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.69
PRK10133	438	L-fucose transporter; Provisional	99.68
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.67
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.67
PRK09874	408	drug efflux system protein MdtG; Provisional	99.67
PRK03633	381	putative MFS family transporter protein; Provision	99.66
PRK10489	417	enterobactin exporter EntS; Provisional	99.66
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.66
TIGR00805	633	oat sodium-independent organic anion transporter.	99.65
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.64
KOG3764|consensus	464		99.64
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.64
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.63
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.62
KOG0252|consensus	538		99.61
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.61
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.61
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.61
PTZ00207	591	hypothetical protein; Provisional	99.59
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.58
PRK10642	490	proline/glycine betaine transporter; Provisional	99.58
TIGR00901	356	2A0125 AmpG-related permease.	99.54
PRK15011	393	sugar efflux transporter B; Provisional	99.53
PRK11902	402	ampG muropeptide transporter; Reviewed	99.53
PRK15011	393	sugar efflux transporter B; Provisional	99.52
PRK11010	491	ampG muropeptide transporter; Validated	99.51
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.51
KOG0253|consensus	528		99.5
PRK05122	399	major facilitator superfamily transporter; Provisi	99.5
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.5
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.49
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.48
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.47
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.47
PRK09528	420	lacY galactoside permease; Reviewed	99.47
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.46
PRK12382	392	putative transporter; Provisional	99.45
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.45
PRK09952	438	shikimate transporter; Provisional	99.44
TIGR00898	505	2A0119 cation transport protein.	99.43
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.43
KOG0569|consensus	485		99.43
PRK09874	408	drug efflux system protein MdtG; Provisional	99.41
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.39
PRK10489	417	enterobactin exporter EntS; Provisional	99.38
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.37
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.37
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.35
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.35
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.33
PRK03633	381	putative MFS family transporter protein; Provision	99.33
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.33
KOG0253|consensus	528		99.32
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.3
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.3
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.29
PRK09528	420	lacY galactoside permease; Reviewed	99.29
KOG2504|consensus	509		99.29
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.29
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.28
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.27
PRK03699	394	putative transporter; Provisional	99.26
PRK03545	390	putative arabinose transporter; Provisional	99.26
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.25
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.25
PRK09705	393	cynX putative cyanate transporter; Provisional	99.24
TIGR00893	399	2A0114 d-galactonate transporter.	99.24
TIGR00900	365	2A0121 H+ Antiporter protein.	99.24
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.24
TIGR00891	405	2A0112 putative sialic acid transporter.	99.21
PRK03893	496	putative sialic acid transporter; Provisional	99.2
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.19
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.19
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.18
PRK15075	434	citrate-proton symporter; Provisional	99.18
TIGR00895	398	2A0115 benzoate transport.	99.17
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.16
PRK11010	491	ampG muropeptide transporter; Validated	99.15
PRK12307	426	putative sialic acid transporter; Provisional	99.15
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.13
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.11
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.1
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.08
KOG2325|consensus	488		99.08
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.07
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.07
PRK10504	471	putative transporter; Provisional	99.06
PRK11663	434	regulatory protein UhpC; Provisional	99.05
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.05
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.04
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.02
PLN00028	476	nitrate transmembrane transporter; Provisional	98.98
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.98
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.97
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.96
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.96
PRK10054	395	putative transporter; Provisional	98.95
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.95
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.95
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.94
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.94
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.94
TIGR00901	356	2A0125 AmpG-related permease.	98.93
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.92
PRK11902	402	ampG muropeptide transporter; Reviewed	98.92
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.92
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.91
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.91
PRK10091	382	MFS transport protein AraJ; Provisional	98.91
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.91
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.9
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.89
COG0477	338	ProP Permeases of the major facilitator superfamil	98.89
KOG2504|consensus	509		98.86
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.86
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.85
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.85
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.85
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.83
KOG0254|consensus	513		98.82
PRK09669	444	putative symporter YagG; Provisional	98.8
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.8
KOG2816|consensus	463		98.77
PRK09848	448	glucuronide transporter; Provisional	98.76
PRK10133	438	L-fucose transporter; Provisional	98.76
KOG3762|consensus	618		98.71
PF13347	428	MFS_2: MFS/sugar transport protein	98.71
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.7
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.69
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.68
PRK09669	444	putative symporter YagG; Provisional	98.67
PRK10429	473	melibiose:sodium symporter; Provisional	98.65
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.65
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.64
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.63
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.63
PRK10429	473	melibiose:sodium symporter; Provisional	98.62
PRK11043	401	putative transporter; Provisional	98.6
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.58
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.57
KOG4686|consensus	459		98.56
KOG0255|consensus	521		98.56
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.55
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.53
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.51
KOG0252|consensus	538		98.48
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.43
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.4
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.39
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.39
PRK11462	460	putative transporter; Provisional	98.38
KOG2563|consensus	480		98.38
PF13347	428	MFS_2: MFS/sugar transport protein	98.37
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.33
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.32
KOG3764|consensus	464		98.29
PRK11462	460	putative transporter; Provisional	98.25
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.25
PRK09848	448	glucuronide transporter; Provisional	98.24
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.23
COG2211	467	MelB Na+/melibiose symporter and related transport	98.17
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.1
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.06
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.03
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.02
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.0
KOG2532|consensus	466		97.97
COG2211	467	MelB Na+/melibiose symporter and related transport	97.92
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	97.83
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.75
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.72
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.67
KOG4686|consensus	459		97.64
KOG2816|consensus	463		97.59
KOG3626|consensus	735		97.59
KOG2533|consensus	495		97.57
PF12832	77	MFS_1_like: MFS_1 like family	97.48
PRK15403	413	multidrug efflux system protein MdtM; Provisional	97.46
KOG3098|consensus	461		97.45
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.41
KOG2615|consensus	451		97.39
COG2270	438	Permeases of the major facilitator superfamily [Ge	97.35
PTZ00207	591	hypothetical protein; Provisional	97.28
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.24
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.19
KOG4332|consensus	454		97.06
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	96.6
KOG0637|consensus	498		96.48
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.43
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	96.4
PRK03612	521	spermidine synthase; Provisional	95.98
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	95.86
KOG1330|consensus	493		95.75
KOG3098|consensus	461		95.7
KOG1237|consensus	571		95.56
KOG3762|consensus	618		94.09
KOG1479|consensus	406		93.44
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	93.31
KOG3810|consensus	433		93.03
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	92.55
KOG3880|consensus	409		91.08
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	90.07
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	89.59
KOG2563|consensus	480		89.34
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	87.69
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	87.26
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	86.66
KOG3097|consensus	390		86.61
KOG3574|consensus	510		86.36
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	85.18
KOG4332|consensus	454		84.4
KOG2325|consensus	488		84.0
COG5336	116	Uncharacterized protein conserved in bacteria [Fun	83.39
TIGR00805	633	oat sodium-independent organic anion transporter.	81.55
KOG0637|consensus	498		80.71
KOG3810|consensus	433		80.43

>TIGR00898 2A0119 cation transport protein

Probab=99.89  E-value=8.2e-22  Score=164.15  Aligned_cols=158  Identities=28%  Similarity=0.577  Sum_probs=145.6

Q ss_pred             hcccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHH
Q psy2964          50 RRRRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFL  129 (208)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  129 (208)
                      ...+++.+++++.|++..+.++..+++.++..+++++.|+++||+|||++++++.++..++.++.+++++++.+++.|++
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l  189 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL  189 (505)
T ss_pred             cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            34578899999999889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccCCCC
Q psy2964         130 TGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLADWQWISVITIFPLIVGLIVAIFTPESA  208 (208)
Q Consensus       130 ~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~petp  208 (208)
                      .|++.+...+....++.|++|+++|+.+.++ ...++.+|.+++|.++..+.+||+.+++.+++.++..+..+++||+|
T Consensus       190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp  267 (505)
T TIGR00898       190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTL-IQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESP  267 (505)
T ss_pred             HHhhccchHHHHHHHhheecChhhhHHHHHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence            9999999999999999999999999999988 67788999999999998888999999998888777666667889986

>KOG0255|consensus

Probab=99.87  E-value=1.9e-21  Score=162.72  Aligned_cols=156  Identities=31%  Similarity=0.448  Sum_probs=140.6

Q ss_pred             ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHh
Q psy2964          52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTG  131 (208)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  131 (208)
                      ..++..++++.|++.....+..+++.+|..+|++++|+++||+|||+++++++++..++.++.++++|++.+.+.|++.|
T Consensus       103 ~~s~~~~~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G  182 (521)
T KOG0255|consen  103 VYSIVSEWNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSG  182 (521)
T ss_pred             cccccchhceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            44566668899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccCCCC
Q psy2964         132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLADWQWISVITIFPLIVGLIVAIFTPESA  208 (208)
Q Consensus       132 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~petp  208 (208)
                      ++.+......+.++.|+.++++|+.+..+ ....+..|.+..+..+.+..+||+.+++..++.++.++.+++.||+|
T Consensus       183 ~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~~~l~~Es~  258 (521)
T KOG0255|consen  183 FFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLLWFLPPESP  258 (521)
T ss_pred             hhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCcCh
Confidence            99999999999999999999999999988 67677666666666666666999999999999888777777778987

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.87  E-value=1.3e-20  Score=161.60  Aligned_cols=152  Identities=20%  Similarity=0.349  Sum_probs=133.3

Q ss_pred             cceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhh
Q psy2964          53 RRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGV  132 (208)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~  132 (208)
                      +.+..++++   +....+++.+++.++.+++++++|+++||+|||+++++++++.+++.++.+++++++.++++|++.|+
T Consensus       191 p~i~~~~gl---s~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~  267 (742)
T TIGR01299       191 PSAEKDLCI---PDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGF  267 (742)
T ss_pred             HHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            444455665   56778899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhh----------------hhhHHHHHHHHHHHHH
Q psy2964         133 GHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL----------------ADWQWISVITIFPLIV  196 (208)
Q Consensus       133 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~----------------~~w~~~~~~~~~~~~~  196 (208)
                      +.+...+...+++.|++|++.|++.+++ +..++.+|.++++.++..+                .+||+++++.+++.++
T Consensus       268 g~g~~~p~~~~~isE~~p~~~Rg~~~g~-~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll  346 (742)
T TIGR01299       268 GIGGAIPIVFSYFAEFLAQEKRGEHLSW-LCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVF  346 (742)
T ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998 6778888888887765432                1689999888888888


Q ss_pred             HHHHHhccCCCC
Q psy2964         197 GLIVAIFTPESA  208 (208)
Q Consensus       197 ~~~~~~~~petp  208 (208)
                      .++..+++||||
T Consensus       347 ~ll~~~~lPESP  358 (742)
T TIGR01299       347 AIGALTFMPESP  358 (742)
T ss_pred             HHHHHHHcCCCH
Confidence            878888899997

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.87  E-value=9.8e-21  Score=154.09  Aligned_cols=153  Identities=16%  Similarity=0.248  Sum_probs=136.0

Q ss_pred             ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHh
Q psy2964          52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTG  131 (208)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  131 (208)
                      .+.+.+++++   +..+.++..+++.+++.+++++.|+++||+|||+++..+.++..++..+.+++++++.+++.|++.|
T Consensus        31 ~~~l~~~~~~---s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G  107 (412)
T TIGR02332        31 GLTMGKDLGL---SATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVG  107 (412)
T ss_pred             HHhhHhhcCC---CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            3456678887   6788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---------hhHHHHHHHHHHHHH-HHHHH
Q psy2964         132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---------DWQWISVITIFPLIV-GLIVA  201 (208)
Q Consensus       132 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---------~w~~~~~~~~~~~~~-~~~~~  201 (208)
                      ++.+...+....++.|++|+++|++++++ ++.+..+|..+++.+++++.         +||+.|++.+++.++ ..+.+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~rg~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~  186 (412)
T TIGR02332       108 IAEAGFLPGILLYLTFWFPAYFRARANAL-FMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTW  186 (412)
T ss_pred             HHHhhHHHHHHHHHHHHcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHh
Confidence            99999989999999999999999999999 77788899999998887652         899999998777665 44556


Q ss_pred             hccCCCC
Q psy2964         202 IFTPESA  208 (208)
Q Consensus       202 ~~~petp  208 (208)
                      +++||+|
T Consensus       187 ~~~~~~p  193 (412)
T TIGR02332       187 FWLDDSP  193 (412)
T ss_pred             hccCCCc
Confidence            6788876

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.85  E-value=8.1e-20  Score=146.55  Aligned_cols=154  Identities=8%  Similarity=-0.048  Sum_probs=125.0

Q ss_pred             hcccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHH
Q psy2964          50 RRRRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFL  129 (208)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  129 (208)
                      ...+.+.+++++   +..+.++..+.+.+++.+++++.|+++||+|||+++..+......+.......++++.+++.|++
T Consensus        12 ~~lp~i~~~~~~---s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l   88 (368)
T TIGR00903        12 PVLSLVAEDIDV---SKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLL   88 (368)
T ss_pred             hhHHHHHHHhCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            335667778887   67788999999999999999999999999999998776655554443323333789999999999


Q ss_pred             HhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHH-HHHHHhccC
Q psy2964         130 TGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIV-GLIVAIFTP  205 (208)
Q Consensus       130 ~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~-~~~~~~~~p  205 (208)
                      +|++.+.. ......++|++|+++|++++++ ...+..+|..+++.++..+.   +||+.|++.+++.++ .++.++.+|
T Consensus        89 ~G~g~~~~-~~~~~~~~~~~~~~~r~~a~~~-~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp  166 (368)
T TIGR00903        89 AALGQPFL-LNAFAPAASQIREERRDLVISL-LSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALP  166 (368)
T ss_pred             HHhHhHHH-HHHHHHHHHHcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcC
Confidence            99998864 5666777999999999999999 67789999999998888875   999999987776655 555666789


Q ss_pred             CCC
Q psy2964         206 ESA  208 (208)
Q Consensus       206 etp  208 (208)
                      |+|
T Consensus       167 ~~p  169 (368)
T TIGR00903       167 ALP  169 (368)
T ss_pred             CCC
Confidence            876

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.84  E-value=2.5e-19  Score=148.21  Aligned_cols=143  Identities=18%  Similarity=0.369  Sum_probs=123.0

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh------------ccHHHHHHHHHHHhh
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS------------KDVVLFSLSRFLTGV  132 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~l~g~  132 (208)
                      +..+.++..+++.++..++++++|+++||+|||+++..+.++..++.+..++.            +.++.+++.|+++|+
T Consensus        53 ~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~  132 (479)
T PRK10077         53 ANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGI  132 (479)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhh
Confidence            56678999999999999999999999999999999999999988887766652            224667899999999


Q ss_pred             hhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhh-----------hhhHHHHHHHHHHHHHHHHHH
Q psy2964         133 GHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL-----------ADWQWISVITIFPLIVGLIVA  201 (208)
Q Consensus       133 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~-----------~~w~~~~~~~~~~~~~~~~~~  201 (208)
                      +.+...+...++++|++|+++|++++++ .+.+..+|..+++.++..+           .+||+.|++.+++.++..+..
T Consensus       133 ~~g~~~~~~~~~i~e~~~~~~rg~~~~~-~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~  211 (479)
T PRK10077        133 GVGLASMLSPMYIAEIAPAHIRGKLVSF-NQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLL  211 (479)
T ss_pred             hHhHHhhHHHHHHHhhCChhhhhHHHHH-HHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999 7778888888887776543           179999998877777766667


Q ss_pred             hccCCCC
Q psy2964         202 IFTPESA  208 (208)
Q Consensus       202 ~~~petp  208 (208)
                      +++||+|
T Consensus       212 ~~l~~s~  218 (479)
T PRK10077        212 YFVPETP  218 (479)
T ss_pred             HcCCCCc
Confidence            7789986

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.83  E-value=2.6e-19  Score=145.84  Aligned_cols=156  Identities=19%  Similarity=0.254  Sum_probs=133.5

Q ss_pred             hhcccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHH
Q psy2964          49 DRRRRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRF  128 (208)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (208)
                      .+.++.+.++++.   +....++..+++.+++.+++++.|+++||+|||++++.+.++.+++.+++..+++++.++++|+
T Consensus        36 ~p~l~~i~~~~~~---~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~  112 (413)
T PRK15403         36 QPGIINVVRDFNA---DVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARF  112 (413)
T ss_pred             ccCHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3335566677775   6778899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHH-HHhcc
Q psy2964         129 LTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLI-VAIFT  204 (208)
Q Consensus       129 l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~-~~~~~  204 (208)
                      ++|++.+...+....++.|.+|+++|++++++ ......+|..++|.+++.+.   +||+.|++.++..++..+ .++.+
T Consensus       113 l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~l  191 (413)
T PRK15403        113 IQGTSICFIATVGYVTVQEAFGQTKGIKLMAI-ITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAM  191 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999887777778889999999999999998 67778889999999888765   899999988877666544 35567


Q ss_pred             CCCC
Q psy2964         205 PESA  208 (208)
Q Consensus       205 petp  208 (208)
                      ||++
T Consensus       192 p~~~  195 (413)
T PRK15403        192 PETV  195 (413)
T ss_pred             CCCc
Confidence            8863

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.83  E-value=3.1e-19  Score=148.78  Aligned_cols=142  Identities=22%  Similarity=0.330  Sum_probs=124.7

Q ss_pred             CchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhcc------HHHHHHHHHHHhhhhhhHHH
Q psy2964          66 SSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKD------VVLFSLSRFLTGVGHFNAFI  139 (208)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~g~~~~~~~~  139 (208)
                      +.+.+++.+.+.++..++++++|+++||+|||+++.++.++..++.++++++++      ++.++++|++.|++.+...+
T Consensus        55 ~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~  134 (502)
T TIGR00887        55 SSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYP  134 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhH
Confidence            345678999999999999999999999999999999999999999888887755      67899999999999999999


Q ss_pred             HHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhh--------------------------hhhHHHHHHHHHH
Q psy2964         140 FYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL--------------------------ADWQWISVITIFP  193 (208)
Q Consensus       140 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~--------------------------~~w~~~~~~~~~~  193 (208)
                      ....+++|.+|+++|++++++ ......+|..+++.++..+                          .+||+++.+.+++
T Consensus       135 ~~~~~~~e~~p~~~Rg~~~~~-~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip  213 (502)
T TIGR00887       135 LSAIITSEFATKKWRGAMMAA-VFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVP  213 (502)
T ss_pred             HHHHHHHHhcChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHH
Confidence            999999999999999999998 6678888888887766432                          1699999888888


Q ss_pred             HHHHHHHHhccCCCC
Q psy2964         194 LIVGLIVAIFTPESA  208 (208)
Q Consensus       194 ~~~~~~~~~~~petp  208 (208)
                      .++..+..+++||||
T Consensus       214 ~~i~~~~~~~lpESp  228 (502)
T TIGR00887       214 ALLALYFRLTIPETP  228 (502)
T ss_pred             HHHHHHHHHhCCCCH
Confidence            888777788899997

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK03545 putative arabinose transporter; Provisional

Probab=99.83  E-value=3.4e-19  Score=143.96  Aligned_cols=152  Identities=10%  Similarity=0.075  Sum_probs=133.8

Q ss_pred             ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHh
Q psy2964          52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTG  131 (208)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  131 (208)
                      .+.+.+++++   +..+.++..+.+.+++.+++++.|+++||+|||+++..+.++.++++++++++++++.+++.|+++|
T Consensus        32 ~~~l~~~~~~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G  108 (390)
T PRK03545         32 LSDIAQSFHM---QTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIA  108 (390)
T ss_pred             hHHHHhHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            4567778887   7788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHH-HHHhccCCC
Q psy2964         132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGL-IVAIFTPES  207 (208)
Q Consensus       132 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~-~~~~~~pet  207 (208)
                      ++.+...+...+++.|++|+++|++++++ +..+..+|..++|.+++.+.   +||+.|++.+++.++.. .....+||.
T Consensus       109 ~~~~~~~~~~~~~i~~~~~~~~r~~~~g~-~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~  187 (390)
T PRK03545        109 FAHAIFWSITASLAIRVAPAGKKAQALSL-LATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLL  187 (390)
T ss_pred             HHHHHHHHHHHHHHHHhCChhhhhhHHHH-HHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            99988888999999999999999999999 78888999999999888764   89999999877766543 334456654

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.83  E-value=4.2e-19  Score=147.53  Aligned_cols=135  Identities=19%  Similarity=0.173  Sum_probs=115.1

Q ss_pred             HHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHH--------HHHHHHHHhhhhhhHHHHHHHH
Q psy2964          73 RSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVL--------FSLSRFLTGVGHFNAFIFYYII  144 (208)
Q Consensus        73 ~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~g~~~~~~~~~~~~~  144 (208)
                      .++..++..++++++|+++||+|||+++.++.++.+++.+++++++++..        ++++|+++|++.|...+....+
T Consensus        63 ~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~  142 (490)
T PRK10642         63 FSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIF  142 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHH
Confidence            46777899999999999999999999999999999999999999999864        7899999999999999999999


Q ss_pred             HHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhh-----------hhhHHHHHHHHHHHHHHHHHHhccCCCC
Q psy2964         145 VLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL-----------ADWQWISVITIFPLIVGLIVAIFTPESA  208 (208)
Q Consensus       145 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~-----------~~w~~~~~~~~~~~~~~~~~~~~~petp  208 (208)
                      ++|++|+++|++..++ ...+..+|..+++.+...+           .+||+.|++.+++.++.+++...+||+|
T Consensus       143 ~~e~~p~~~Rg~~~~~-~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp  216 (490)
T PRK10642        143 VAEYSPDRKRGFMGSW-LDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETP  216 (490)
T ss_pred             HHHhCCCCCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCCh
Confidence            9999999999999888 5666667777666444322           2899999997766666666667789986

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.83  E-value=4.5e-19  Score=140.60  Aligned_cols=152  Identities=16%  Similarity=0.182  Sum_probs=140.6

Q ss_pred             hcccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHH
Q psy2964          50 RRRRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFL  129 (208)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  129 (208)
                      ..++.+.++++.   +....++..++|.++..+++++...+.||+.||++++..+.++.+++++.++++|++.++++|++
T Consensus        34 gLLp~iA~dl~v---s~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~  110 (394)
T COG2814          34 GLLPPIAADLGV---SEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARAL  110 (394)
T ss_pred             hchHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            346788888987   78889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHH-HHHhccC
Q psy2964         130 TGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGL-IVAIFTP  205 (208)
Q Consensus       130 ~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~-~~~~~~p  205 (208)
                      .|+..|..++...++..++.|+++|++++++ ...+..++.++|..++.++.   |||+.|++.+...++.+ ..+..+|
T Consensus       111 ~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiai-v~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         111 AGLAHGVFWSIAAALAARLVPPGKRGRALAL-VFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCccchhhHHHH-HHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999999 66699999999999999887   99999999888887744 4667788

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.83  E-value=4.3e-19  Score=147.64  Aligned_cols=154  Identities=15%  Similarity=0.064  Sum_probs=133.1

Q ss_pred             cccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHH
Q psy2964          51 RRRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLT  130 (208)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  130 (208)
                      ..+++.++++.   +..+.+|..+.|.++...+.++.|+++||+|||+++..+.++..+++++++.+++++.++++|+++
T Consensus        28 a~p~i~~~l~~---s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~  104 (495)
T PRK14995         28 AAPTLSMTLGA---SGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALL  104 (495)
T ss_pred             HHHHHHHHhCC---CHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            35677777875   667899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhHHHHHHHHHHhhc-CCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHH-HHHHhccC
Q psy2964         131 GVGHFNAFIFYYIIVLECV-GPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVG-LIVAIFTP  205 (208)
Q Consensus       131 g~~~~~~~~~~~~~~~e~~-~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~-~~~~~~~p  205 (208)
                      |++.+...+.....+.+.+ |+++|++++++ +.....+|..++|.+++++.   +|||.|++...+.++. .+..+++|
T Consensus       105 G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~-~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~  183 (495)
T PRK14995        105 AIGAAMIVPATLAGIRATFTEEKQRNMALGV-WAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVP  183 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999988888888787765 78999999999 77789999999999999885   8999999876655553 34455567


Q ss_pred             CCC
Q psy2964         206 ESA  208 (208)
Q Consensus       206 etp  208 (208)
                      |.|
T Consensus       184 ~~~  186 (495)
T PRK14995        184 RQA  186 (495)
T ss_pred             CCC
Confidence            653

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.82  E-value=1.2e-18  Score=141.09  Aligned_cols=153  Identities=10%  Similarity=0.103  Sum_probs=133.0

Q ss_pred             ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHh
Q psy2964          52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTG  131 (208)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  131 (208)
                      .+.+.+++++   +..+.++..+++.++..+++++.|+++||+|||+++..+.++.+++.++..+.++++.+++.|+++|
T Consensus        43 l~~~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G  119 (394)
T PRK10213         43 LTPMAQDLGI---SEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLG  119 (394)
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHH
Confidence            4556677776   6778899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHH-HHhccCCC
Q psy2964         132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLI-VAIFTPES  207 (208)
Q Consensus       132 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~-~~~~~pet  207 (208)
                      ++.+...+....++.|++|+++|++++++ ......+|..++|.+++.+.   +||+.|++.+++.++..+ .....||+
T Consensus       120 ~~~g~~~~~~~~~i~~~~~~~~~~~a~~~-~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~  198 (394)
T PRK10213        120 LALGGFWAMSASLTMRLVPPRTVPKALSV-IFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSL  198 (394)
T ss_pred             HhhHHHHHHHHHHHHHHcCHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence            99999999999999999999999999999 66688899999999998875   899999887766555433 33456775


Q ss_pred             C
Q psy2964         208 A  208 (208)
Q Consensus       208 p  208 (208)
                      |
T Consensus       199 ~  199 (394)
T PRK10213        199 P  199 (394)
T ss_pred             C
Confidence            3

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.81  E-value=1.3e-18  Score=140.49  Aligned_cols=153  Identities=20%  Similarity=0.265  Sum_probs=133.7

Q ss_pred             ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHh
Q psy2964          52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTG  131 (208)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  131 (208)
                      .+.+.+++++   +..+.++..+++.++..++.++.|+++||+|||++++.+.++.+++.++.++.++++.+++.|++.|
T Consensus        35 ~~~l~~~~~~---s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G  111 (405)
T TIGR00891        35 LAEVAGEFGL---TTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIG  111 (405)
T ss_pred             HHHHHHHhCC---ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            3556677776   6778999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---h--hHHHHHHHHHHHHHHHHHHhccCC
Q psy2964         132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---D--WQWISVITIFPLIVGLIVAIFTPE  206 (208)
Q Consensus       132 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~--w~~~~~~~~~~~~~~~~~~~~~pe  206 (208)
                      ++.+...+....++.|.+|+++|+++.++ ...+..+|..+++.+++.+.   +  ||+.+++.+++.++.++.....||
T Consensus       112 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~  190 (405)
T TIGR00891       112 IGMGGEYGSSAAYVIESWPKHLRNKASGL-LISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPE  190 (405)
T ss_pred             hhhhhhhHHHHHHHHHhCChhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999 67788899999988877664   3  999998877666666666666787


Q ss_pred             CC
Q psy2964         207 SA  208 (208)
Q Consensus       207 tp  208 (208)
                      +|
T Consensus       191 ~~  192 (405)
T TIGR00891       191 AE  192 (405)
T ss_pred             Ch
Confidence            63

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.80  E-value=2.1e-18  Score=141.29  Aligned_cols=135  Identities=17%  Similarity=0.192  Sum_probs=111.2

Q ss_pred             HHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHH--------HHHHHHHHHhhhhhhHHHHHHHH
Q psy2964          73 RSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVV--------LFSLSRFLTGVGHFNAFIFYYII  144 (208)
Q Consensus        73 ~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~g~~~~~~~~~~~~~  144 (208)
                      .+...++..++++++|+++||+|||+++..+.++..++.+++++.+++.        .++++|+++|++.|...+...++
T Consensus        69 ~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~  148 (432)
T PRK10406         69 FAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATY  148 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHH
Confidence            3455566669999999999999999999999999999999998887763        58889999999999999999999


Q ss_pred             HHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhh-----------hhhHHHHHHHHHHHHHHHHHHhccCCCC
Q psy2964         145 VLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL-----------ADWQWISVITIFPLIVGLIVAIFTPESA  208 (208)
Q Consensus       145 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~-----------~~w~~~~~~~~~~~~~~~~~~~~~petp  208 (208)
                      +.|++|+++|++..++ ...+...|..+++.+...+           .+||++|++.+++.++..+....+||+|
T Consensus       149 i~e~~p~~~rg~~~~~-~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~  222 (432)
T PRK10406        149 MSEVAVEGRKGFYASF-QYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETS  222 (432)
T ss_pred             HHHhCCCCcccHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            9999999999999887 5556666666666543322           2899999988887777666666678875

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.80  E-value=2.6e-18  Score=138.53  Aligned_cols=153  Identities=18%  Similarity=0.218  Sum_probs=132.1

Q ss_pred             cccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHH
Q psy2964          51 RRRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLT  130 (208)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  130 (208)
                      ..+.+.+++++   +..+.++..+.+.++..+++++.|+++||+|||+++..+.++.+++.++.+++++++.+++.|++.
T Consensus        25 ~l~~~~~~~g~---s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~  101 (382)
T PRK10091         25 VLTELAHDVGI---SIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVS  101 (382)
T ss_pred             ChHHHHHHcCC---CHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            34556677776   667789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHH-HHHhccCC
Q psy2964         131 GVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGL-IVAIFTPE  206 (208)
Q Consensus       131 g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~-~~~~~~pe  206 (208)
                      |++.+...+....++.|++|+++|+++++. ...+..+|..++|.+++.+.   +||+.|++.++..++.. ...+++||
T Consensus       102 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~  180 (382)
T PRK10091        102 GFPHGAFFGVGAIVLSKIIKPGKVTAAVAG-MVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPD  180 (382)
T ss_pred             HhhhHHHHHHHHHHHHHhCChHHhhHHHHH-HHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            999998888888999999999999999998 66688889999888887764   89999998877665533 34556777


Q ss_pred             C
Q psy2964         207 S  207 (208)
Q Consensus       207 t  207 (208)
                      .
T Consensus       181 ~  181 (382)
T PRK10091        181 I  181 (382)
T ss_pred             C
Confidence            4

>KOG0569|consensus

Probab=99.80  E-value=4e-18  Score=138.87  Aligned_cols=165  Identities=23%  Similarity=0.290  Sum_probs=134.6

Q ss_pred             HhhhhcchhhhhcccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh-
Q psy2964          39 EEKKERNEELDRRRRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS-  117 (208)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-  117 (208)
                      ..+++.+..+..++..-.++-.+    +...+.+++++.+|.++|++..++++||+|||..+.++.++..++..++.++ 
T Consensus        36 ~i~~f~n~t~~~r~g~~~s~~~~----~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~  111 (485)
T KOG0569|consen   36 LIKSFINETLIERYGLPLSDSTL----DLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSK  111 (485)
T ss_pred             HHHHHHHHHHHHhcCCCCChHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555554433333322    3457888999999999999999999999999999999999998888877765 


Q ss_pred             --ccHHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHh--h---hhhHHHHHHH
Q psy2964         118 --KDVVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYY--L---ADWQWISVIT  190 (208)
Q Consensus       118 --~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~--~---~~w~~~~~~~  190 (208)
                        +++..++++|++.|+..+......+.|+.|..|.+.||..-.+ .+++..+|..++..++.-  +   ..|++.+.+.
T Consensus       112 ~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~-~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~  190 (485)
T KOG0569|consen  112 SAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTL-LQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFP  190 (485)
T ss_pred             HhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHH-HHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHH
Confidence              6889999999999999999999999999999999999988666 777888888777554432  2   2699999999


Q ss_pred             HHHHHHHHHHHhccCCCC
Q psy2964         191 IFPLIVGLIVAIFTPESA  208 (208)
Q Consensus       191 ~~~~~~~~~~~~~~petp  208 (208)
                      .+++++.++.+.++||||
T Consensus       191 ~i~~~~~l~~l~~~PESP  208 (485)
T KOG0569|consen  191 LIPALLQLALLPFLPESP  208 (485)
T ss_pred             HHHHHHHHHHHhcCCCCc
Confidence            999999999999999998

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.80  E-value=2e-18  Score=141.40  Aligned_cols=153  Identities=14%  Similarity=0.102  Sum_probs=132.3

Q ss_pred             ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHh
Q psy2964          52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTG  131 (208)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  131 (208)
                      .+.+.+++++   +..+.+++.+++.++..+++++.|+++||+|||+++.++.++..++.++.++.++++.+.+.|++.|
T Consensus        46 ~~~~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g  122 (434)
T PRK11663         46 MPEMLADLGL---SRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNA  122 (434)
T ss_pred             hHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            5566677776   6678899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHH-HHHHHhccCCC
Q psy2964         132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIV-GLIVAIFTPES  207 (208)
Q Consensus       132 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~-~~~~~~~~pet  207 (208)
                      ++.+...+....++.|++|+++|++++++ ++.+..+|..++|.+.+.+.   +||+.|++.+++.++ .++..+++||+
T Consensus       123 ~~~g~~~~~~~~~~~~~~~~~~rg~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~  201 (434)
T PRK11663        123 FFQGWGWPVCAKLLTAWYSRTERGGWWAI-WNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDK  201 (434)
T ss_pred             HHHHccchHHHHHHHHhCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            99988888999999999999999999999 67788899999988877764   899999887766554 34444556665


Q ss_pred             C
Q psy2964         208 A  208 (208)
Q Consensus       208 p  208 (208)
                      |
T Consensus       202 p  202 (434)
T PRK11663        202 P  202 (434)
T ss_pred             H
Confidence            3

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.80  E-value=3.3e-18  Score=139.59  Aligned_cols=152  Identities=19%  Similarity=0.352  Sum_probs=129.5

Q ss_pred             ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHh
Q psy2964          52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTG  131 (208)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  131 (208)
                      .+.+.+++++   ++.+.++..+++.++..+++++.|+++||+|||+++..+.+..+++.++.+++++++.++++|++.|
T Consensus        41 ~~~i~~~~~~---s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G  117 (426)
T PRK12307         41 MYLIKADLGL---TDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVG  117 (426)
T ss_pred             HHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            3455667776   6678899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHhccCCC
Q psy2964         132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIVAIFTPES  207 (208)
Q Consensus       132 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~pet  207 (208)
                      ++.+...+....++.|.+|+++|+++.++ ...+..+|..+++.+...+.   +||+.+++..++.++........||+
T Consensus       118 ~g~g~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~~~~~~~~~~~p~~  195 (426)
T PRK12307        118 MGMAGEYACASTYAVESWPKHLKSKASAF-LVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLLVIYIRARAPES  195 (426)
T ss_pred             HHHhhHHHHHHHHHHHhCCHhHhhHhhhH-HHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence            99999999999999999999999999999 67788899999887776654   89999987655444444333345664

>KOG0254|consensus

Probab=99.79  E-value=3.2e-18  Score=143.02  Aligned_cols=140  Identities=22%  Similarity=0.370  Sum_probs=129.4

Q ss_pred             hHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHHHHh
Q psy2964          68 NLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIVLE  147 (208)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e  147 (208)
                      +.+++.+.+.++..+++++.|+++|++|||+.++++.+...++.++.++++++..+.++|++.|+|.|......+.|++|
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sE  169 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISE  169 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhh
Confidence            34899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHhccCCCC
Q psy2964         148 CVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA----DWQWISVITIFPLIVGLIVAIFTPESA  208 (208)
Q Consensus       148 ~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~~petp  208 (208)
                      ..|++.|+...+. .+....+|..++..++....    +||.++.+..+++++..+..+++||||
T Consensus       170 iap~~~RG~l~~~-~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp  233 (513)
T KOG0254|consen  170 IAPAHIRGTLVSL-YQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESP  233 (513)
T ss_pred             cCChhhhHHHHHH-HHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            9999999999988 78888889888877766664    699999999999888776788899998

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.79  E-value=3e-18  Score=137.36  Aligned_cols=151  Identities=19%  Similarity=0.226  Sum_probs=131.6

Q ss_pred             cceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhh
Q psy2964          53 RRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGV  132 (208)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~  132 (208)
                      +.+.+++++   +..+.++..+++.++..++.++.|+++||+|||+++..+.++..++..+.++.++++.+.+.|++.|+
T Consensus        18 ~~~~~~~g~---s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~   94 (399)
T TIGR00893        18 PMLQEDLGL---SAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGA   94 (399)
T ss_pred             HHHHHhhCC---ChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence            445566776   67788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHH-HHHHhccCCC
Q psy2964         133 GHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVG-LIVAIFTPES  207 (208)
Q Consensus       133 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~-~~~~~~~pet  207 (208)
                      +.+...+....++.|.+|+++|++++++ ......+|..++|.+++.+.   +|++.|++.+++.++. ++..+..||+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (399)
T TIGR00893        95 AEAPFFPGIILIVASWFPASERATAVSI-FNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDP  172 (399)
T ss_pred             HHHhhhhHHHHHHHHhCCHHHHHHHHHH-HHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCC
Confidence            9999999999999999999999999999 77788899999998888654   8999999887766653 3344455554

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.79  E-value=6.1e-18  Score=137.19  Aligned_cols=153  Identities=23%  Similarity=0.212  Sum_probs=131.7

Q ss_pred             ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHh
Q psy2964          52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTG  131 (208)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  131 (208)
                      .+.+.+++++   +..+.++..+.+.++..+++++.|+++||+|||+++..+.++..++.++..+.++++.+++.|++.|
T Consensus        38 ~~~~~~~~~~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G  114 (406)
T PRK11551         38 APRMAQEFGL---DVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTG  114 (406)
T ss_pred             HHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            4556677776   6778999999999999999999999999999999999999999998888888999999999999999


Q ss_pred             hhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHH-HHHHHhccCCC
Q psy2964         132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIV-GLIVAIFTPES  207 (208)
Q Consensus       132 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~-~~~~~~~~pet  207 (208)
                      ++.+...+....++.|.+|+++|++++++ ...+..+|..+++.++..+.   +|++.+++.+++.++ ..+..+++||+
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  193 (406)
T PRK11551        115 VGLGGALPNLIALTSEAVGPRLRGTAVSL-MYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPES  193 (406)
T ss_pred             hhHHHHHHHHHHHHHHHcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999999999 67788899999988876654   799998887665554 33445567876


Q ss_pred             C
Q psy2964         208 A  208 (208)
Q Consensus       208 p  208 (208)
                      |
T Consensus       194 ~  194 (406)
T PRK11551        194 R  194 (406)
T ss_pred             h
Confidence            4

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.78  E-value=3.3e-18  Score=141.65  Aligned_cols=152  Identities=18%  Similarity=0.260  Sum_probs=132.2

Q ss_pred             ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHh
Q psy2964          52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTG  131 (208)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  131 (208)
                      .+.+.++++.   +..+.++..+.+.++..++.++.|+++||+|||+.++.+.++..++..+++..++++.+++.|+++|
T Consensus        25 ~p~~~~~~g~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G  101 (485)
T TIGR00711        25 IPTIAGDLGS---SLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQG  101 (485)
T ss_pred             HHHHHHhcCC---ChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence            4556666775   5677899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHH-HHHhccCCC
Q psy2964         132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGL-IVAIFTPES  207 (208)
Q Consensus       132 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~-~~~~~~pet  207 (208)
                      ++.+...+....++.|.+|+++|++++++ +.....+|..++|.+++++.   +||+.|++.+.+.++.. +..++.||+
T Consensus       102 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~  180 (485)
T TIGR00711       102 FGGGPLIPLSFSTLLNIYPPEKRGRAMAI-WGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRD  180 (485)
T ss_pred             hhhhhHHHHHHHHHHHHCCHHHHHHHHHH-HHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCc
Confidence            99999999999999999999999999999 77788899999999988875   89999988766655533 344455553

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.78  E-value=9.8e-18  Score=132.87  Aligned_cols=148  Identities=22%  Similarity=0.377  Sum_probs=127.9

Q ss_pred             ceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhh
Q psy2964          54 RRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVG  133 (208)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~  133 (208)
                      .+.++++.   +..+.++..+++.++..+++++.|+++||+|||+++..+.++.+++..+..++++.+.+++.|++.|++
T Consensus        22 ~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~   98 (352)
T PF07690_consen   22 YLAEELGL---SPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIG   98 (352)
T ss_dssp             HHHCCSTT---TSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHccCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccc
Confidence            45566676   677899999999999999999999999999999999999999999966666668888999999999999


Q ss_pred             hhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHH-HhccC
Q psy2964         134 HFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIV-AIFTP  205 (208)
Q Consensus       134 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~-~~~~p  205 (208)
                      .+...+....++.|.+|+++|++++++ ......+|..++|.+++.+.   +||+.+++.++..++..++ ..+.+
T Consensus        99 ~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~  173 (352)
T PF07690_consen   99 SGFFSPASNALIADWFPPEERGRAFGI-LSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLP  173 (352)
T ss_dssp             HHHHHHHHHHHHHHCCCTCCHHHHHHH-HHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC-
T ss_pred             cccccccccccccccchhhhhhhcccc-ccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhh
Confidence            999999999999999999999999999 78899999999999999886   8999999988877775443 34444

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.78  E-value=1e-17  Score=134.59  Aligned_cols=152  Identities=16%  Similarity=0.228  Sum_probs=132.0

Q ss_pred             ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHh
Q psy2964          52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTG  131 (208)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  131 (208)
                      .+.+.++++.   +..+.++..+++.++..+++++.|+++||+|||+.+..+.++..++.++....++++.+.+.|++.|
T Consensus        28 ~p~~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  104 (385)
T TIGR00710        28 FPEIAADLST---PASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQA  104 (385)
T ss_pred             HHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            4556667776   6778999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHH-HHHHHhccCCC
Q psy2964         132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIV-GLIVAIFTPES  207 (208)
Q Consensus       132 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~-~~~~~~~~pet  207 (208)
                      ++.+...+....++.|.+|+++|++++++ .+....+|..++|.+++.+.   +|++.+++.++..++ ..+.++..||+
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (385)
T TIGR00710       105 FGASAGSVISQALVRDIYPGEELSRIYSI-LMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPET  183 (385)
T ss_pred             cchhHHHHHHHHHHHHhcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999999999 67788889999998888765   899998887766555 33444556765

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.78  E-value=7.2e-18  Score=138.53  Aligned_cols=142  Identities=22%  Similarity=0.345  Sum_probs=124.3

Q ss_pred             CchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh---ccHHHHHHHHHHHhhhhhhHHHHHH
Q psy2964          66 SSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS---KDVVLFSLSRFLTGVGHFNAFIFYY  142 (208)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~~  142 (208)
                      ..+.++..+++.++..+++++.|+++||+|||++++.+.++..++.++....   .+++.+++.|++.|++.+...+...
T Consensus        70 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~  149 (481)
T TIGR00879        70 SSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVP  149 (481)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHH
Confidence            5788999999999999999999999999999999999999999988887554   3455889999999999999999999


Q ss_pred             HHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHH---Hhhh---hhHHHHHHHHHHHHHHHHHHhccCCCC
Q psy2964         143 IIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIA---YYLA---DWQWISVITIFPLIVGLIVAIFTPESA  208 (208)
Q Consensus       143 ~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~---~~~~---~w~~~~~~~~~~~~~~~~~~~~~petp  208 (208)
                      .++.|++|+++|++++++ +..+..+|..+++.++   ....   +||+.|++.++..++..+..+++||+|
T Consensus       150 ~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~  220 (481)
T TIGR00879       150 MYLSEIAPKALRGALTSL-YQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESP  220 (481)
T ss_pred             HHHHccCChhhhhhhhhH-HHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCh
Confidence            999999999999999999 7778899999999988   5432   899999997666666666677788875

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.78  E-value=1.5e-17  Score=133.60  Aligned_cols=154  Identities=20%  Similarity=0.309  Sum_probs=132.9

Q ss_pred             hcccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHH
Q psy2964          50 RRRRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFL  129 (208)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  129 (208)
                      +..+.+.+++++   +..+.++..+++.++..++.+++|+++||+|||+.+..+.++.+++..++...++++.+.+.|++
T Consensus        12 p~~~~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l   88 (377)
T PRK11102         12 PALPVIAADFGV---SAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFL   88 (377)
T ss_pred             ccHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence            344566667776   67788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHH-HHHHhccC
Q psy2964         130 TGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVG-LIVAIFTP  205 (208)
Q Consensus       130 ~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~-~~~~~~~p  205 (208)
                      .|++.+...+....++.|.+|+++|++++++ ......+|..++|.+++.+.   +|++.+++.+++.++. .+..+.+|
T Consensus        89 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (377)
T PRK11102         89 HGLAAAAASVVINALMRDMFPKEEFSRMMSF-VTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIP  167 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999989999999999999999999999 66788889999998887764   8999998877766554 44455667


Q ss_pred             CC
Q psy2964         206 ES  207 (208)
Q Consensus       206 et  207 (208)
                      |+
T Consensus       168 ~~  169 (377)
T PRK11102        168 ET  169 (377)
T ss_pred             cc
Confidence            64

>PRK09952 shikimate transporter; Provisional

Probab=99.77  E-value=2e-17  Score=135.69  Aligned_cols=133  Identities=19%  Similarity=0.182  Sum_probs=111.6

Q ss_pred             HHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHH--------HHHHHHHHHhhhhhhHHHHHHHHHH
Q psy2964          75 IFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVV--------LFSLSRFLTGVGHFNAFIFYYIIVL  146 (208)
Q Consensus        75 ~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~g~~~~~~~~~~~~~~~  146 (208)
                      +..++..+++++.|+++||+|||+++..+.++.+++++++++++++.        .++++|+++|++.+...+....++.
T Consensus        72 ~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~  151 (438)
T PRK09952         72 VGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAV  151 (438)
T ss_pred             HHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHH
Confidence            44566789999999999999999999999999999999999999876        4888999999999999999999999


Q ss_pred             hhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhh-----------hhhHHHHHHHHHHHHHHHHHHhccCCCC
Q psy2964         147 ECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL-----------ADWQWISVITIFPLIVGLIVAIFTPESA  208 (208)
Q Consensus       147 e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~-----------~~w~~~~~~~~~~~~~~~~~~~~~petp  208 (208)
                      |++|+++|++..+. ...++.+|..+++.+...+           .+||++|++.+++.++........||+|
T Consensus       152 e~~p~~~rg~~~~~-~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~  223 (438)
T PRK09952        152 ESAPKNKKAFYSSG-VQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESA  223 (438)
T ss_pred             HhCCCCCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            99999999998887 6777788887776554432           2899999988777665555555678875

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.77  E-value=1.6e-17  Score=134.49  Aligned_cols=142  Identities=14%  Similarity=0.067  Sum_probs=121.8

Q ss_pred             hcccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHH
Q psy2964          50 RRRRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFL  129 (208)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  129 (208)
                      ...+.+.+++++   +..+.++..+++.+++.+++++.|+++||+|||+++..+..+.+++...++++++++.+++.|++
T Consensus        30 ~~lp~i~~~~~~---s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l  106 (393)
T PRK09705         30 PLLPQLRQASGM---SFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALL  106 (393)
T ss_pred             hhHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHH
Confidence            335677788887   77889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHH
Q psy2964         130 TGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA----DWQWISVITIFPLIV  196 (208)
Q Consensus       130 ~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~~~~  196 (208)
                      +|++.+...+....++.+.+| ++|+++++. +..+...|..+++.++..+.    +||+.+.+.++..++
T Consensus       107 ~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~-~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~  175 (393)
T PRK09705        107 GGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGL-WSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVV  175 (393)
T ss_pred             HHhHHHHHhhhhhHHHHHHcc-ccchhHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            999999999999999999997 779999998 66666677777776666543    799877665554443

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.77  E-value=2.9e-17  Score=132.78  Aligned_cols=153  Identities=18%  Similarity=0.252  Sum_probs=130.1

Q ss_pred             cccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHH
Q psy2964          51 RRRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLT  130 (208)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  130 (208)
                      ..+.+.++++.   +..+.++..+++.++..+++++.|+++||+|||+.+..+.++..++..+....++++.+.+.|++.
T Consensus        25 ~lp~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~  101 (392)
T PRK10473         25 GLPRIAADLNA---SEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQ  101 (392)
T ss_pred             hHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            34556667776   567788999999999999999999999999999999999999999999888889999999999999


Q ss_pred             hhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHH-HHHHHhccCC
Q psy2964         131 GVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIV-GLIVAIFTPE  206 (208)
Q Consensus       131 g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~-~~~~~~~~pe  206 (208)
                      |++.+...+....++.|.+|+++|++++++ ......++..++|.+++.+.   +|++.+++.++..++ ..+..+.+||
T Consensus       102 g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  180 (392)
T PRK10473        102 GIGAGCCYVVAFAILRDTLDDRRRAKVLSL-LNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKE  180 (392)
T ss_pred             HhhhhHHHHHHHHHHHHHcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            999998888999999999999999999999 56677788888998887764   899998887766655 3344455666


Q ss_pred             C
Q psy2964         207 S  207 (208)
Q Consensus       207 t  207 (208)
                      +
T Consensus       181 ~  181 (392)
T PRK10473        181 T  181 (392)
T ss_pred             C
Confidence            5

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.76  E-value=4.9e-17  Score=132.04  Aligned_cols=155  Identities=17%  Similarity=0.186  Sum_probs=130.0

Q ss_pred             hcccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHH
Q psy2964          50 RRRRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFL  129 (208)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  129 (208)
                      ..++.+.+++++   +..+.++..+.+.++..++.++.|+++||+|||+++..+.....++.++....++++.+++.|++
T Consensus        34 ~~~~~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l  110 (406)
T PRK15402         34 PGMLAVVEDFNA---GAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFL  110 (406)
T ss_pred             cchHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence            334556677776   66788899999999999999999999999999999999999999999888889999999999999


Q ss_pred             HhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHH-HHhccC
Q psy2964         130 TGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLI-VAIFTP  205 (208)
Q Consensus       130 ~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~-~~~~~p  205 (208)
                      .|++.+...+....++.|.+|+++|.+.+++ ......++..++|.+++.+.   +|++.+++.++..++..+ .++..|
T Consensus       111 ~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~  189 (406)
T PRK15402        111 QGIGLCFIGAVGYAAIQESFEEADAIKITAL-MANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMP  189 (406)
T ss_pred             HHhHhhhHHHHHHHHHHHHhChhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999988888889999999999999998888 45566678888888877764   899999887776665443 445567


Q ss_pred             CCC
Q psy2964         206 ESA  208 (208)
Q Consensus       206 etp  208 (208)
                      |++
T Consensus       190 ~~~  192 (406)
T PRK15402        190 ETA  192 (406)
T ss_pred             CCC
Confidence            753

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.76  E-value=3.2e-17  Score=130.41  Aligned_cols=134  Identities=16%  Similarity=0.151  Sum_probs=119.8

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhc-----cHHHHHHHHHHHhhhhhhHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSK-----DVVLFSLSRFLTGVGHFNAFI  139 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~g~~~~~~~~  139 (208)
                      +..+.++..+++.++..+++++.|+++||+|||+++..+.++..++.++....+     +++.+++.|++.|++.+...+
T Consensus        32 s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~  111 (365)
T TIGR00900        32 SASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTP  111 (365)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            567889999999999999999999999999999999999998888888777776     899999999999999999999


Q ss_pred             HHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHH
Q psy2964         140 FYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLI  199 (208)
Q Consensus       140 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~  199 (208)
                      ...+++.|++|+++|++++++ .+....+|..++|.+++.+.   +|++.+++.++..++..+
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~  173 (365)
T TIGR00900       112 AYQAMLPDLVPEEQLTQANSL-SQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISAL  173 (365)
T ss_pred             HHHHHHHhcCCHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999 77888999999999988875   899998887766555443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.76  E-value=1.2e-17  Score=137.97  Aligned_cols=152  Identities=13%  Similarity=0.030  Sum_probs=124.2

Q ss_pred             ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhh-----hccHHHHHHH
Q psy2964          52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPF-----SKDVVLFSLS  126 (208)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~  126 (208)
                      .+.+.+++++   +..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.++..++.+.     +++++.+++.
T Consensus        52 ~~~i~~~~~~---s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  128 (467)
T PRK09556         52 QNDMISTYGL---STTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIAL  128 (467)
T ss_pred             hHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence            5667778887   6788999999999999999999999999999999998888877777665554     5899999999


Q ss_pred             HHHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh------hhHHHHHHHHHHHHH-HHH
Q psy2964         127 RFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA------DWQWISVITIFPLIV-GLI  199 (208)
Q Consensus       127 ~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~------~w~~~~~~~~~~~~~-~~~  199 (208)
                      |++.|++.+...+....+++|++|+++|++++|+ +..+..+|..+++.+..++.      +|+..|.+.+++.++ +++
T Consensus       129 r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi-~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~  207 (467)
T PRK09556        129 WALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGF-WNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFI  207 (467)
T ss_pred             HHHHHHHHhccchHHHHHHHHHcCccceeeeEEe-eecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHH
Confidence            9999999998889999999999999999999999 67778888888877765432      588878776666554 344


Q ss_pred             HHhccCCC
Q psy2964         200 VAIFTPES  207 (208)
Q Consensus       200 ~~~~~pet  207 (208)
                      .+++.++.
T Consensus       208 ~~~~~~~~  215 (467)
T PRK09556        208 GLRYGSDS  215 (467)
T ss_pred             HHHhCCCC
Confidence            44444443

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.76  E-value=3e-18  Score=135.21  Aligned_cols=157  Identities=15%  Similarity=0.129  Sum_probs=143.2

Q ss_pred             hhhcccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHH
Q psy2964          48 LDRRRRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSR  127 (208)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (208)
                      +....+.+.++.++   +..+.+++.+.+.+.+.++.++.|.++||.++|..+..++++.++..++++++++.+.+.++.
T Consensus        48 F~~a~p~l~e~~~l---sk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~  124 (448)
T COG2271          48 FNLAMPALIEDGGL---SKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLW  124 (448)
T ss_pred             HhhccHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            33336778888877   789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHH--Hhhh---hhHHHHHHHHHHHHH-HHHHH
Q psy2964         128 FLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIA--YYLA---DWQWISVITIFPLIV-GLIVA  201 (208)
Q Consensus       128 ~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~--~~~~---~w~~~~~~~~~~~~~-~~~~~  201 (208)
                      ++.|...|+..|.+...++.++|+++||+..++ ++.+.++|+.+.|.+.  +++.   +||..|++.++++++ +++.+
T Consensus       125 ~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~si-Wn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~  203 (448)
T COG2271         125 VLNGWFQGMGWPPCARTITHWFSRKERGTWWSI-WNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILL  203 (448)
T ss_pred             HHHHHHhcCCCcHHHHHHHHHcCccccCceEEE-ehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999 8999999999988888  5555   899999999888766 77777


Q ss_pred             hccCCCC
Q psy2964         202 IFTPESA  208 (208)
Q Consensus       202 ~~~petp  208 (208)
                      +.++|+|
T Consensus       204 ~~~rd~P  210 (448)
T COG2271         204 FLLRDRP  210 (448)
T ss_pred             HHhCCCc
Confidence            8888887

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.75  E-value=3e-17  Score=131.02  Aligned_cols=150  Identities=13%  Similarity=0.101  Sum_probs=123.7

Q ss_pred             cccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHH
Q psy2964          51 RRRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLT  130 (208)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  130 (208)
                      ..+.+.+++++   +..+.++..+++.++..+++++.|+++||+|||+++..+.++.+++.++++++++++.+.+.|++.
T Consensus        25 ~~~~~~~~~~~---s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (377)
T TIGR00890        25 LAPPLGRYFGV---GVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLA  101 (377)
T ss_pred             HHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566677777   677899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHH-HHHHhhh--hhHHHHHHHHHHHHHHH-HHHhccC
Q psy2964         131 GVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALP-WIAYYLA--DWQWISVITIFPLIVGL-IVAIFTP  205 (208)
Q Consensus       131 g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~-~~~~~~~--~w~~~~~~~~~~~~~~~-~~~~~~p  205 (208)
                      |++.+...+.....+.+++| ++|+++.++ ...+..+|..+++ .......  +||+.|++.++..++.. ..+++.+
T Consensus       102 g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~  178 (377)
T TIGR00890       102 SAGVGIAYGIALNTAVKWFP-DKRGLASGI-IIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIG  178 (377)
T ss_pred             hHHHHHHHHhHHHHHHHHcC-cccHHHHHH-HHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhee
Confidence            99999888888888888887 579999998 6777778876644 4444433  89999998877766643 3344443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.75  E-value=8e-17  Score=130.25  Aligned_cols=154  Identities=16%  Similarity=0.164  Sum_probs=131.1

Q ss_pred             cccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHH
Q psy2964          51 RRRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLT  130 (208)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  130 (208)
                      ..+.+.+++++   +..+.++..+++.++..+++++.|+++||+|||+.+..+.....++.++....++++.+.+.|++.
T Consensus        30 ~~~~i~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  106 (394)
T PRK11652         30 AIADMARDLNV---REGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQ  106 (394)
T ss_pred             cHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            34556677776   677899999999999999999999999999999999999999999998888889999999999999


Q ss_pred             hhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHH-HHHHHhccCC
Q psy2964         131 GVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIV-GLIVAIFTPE  206 (208)
Q Consensus       131 g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~-~~~~~~~~pe  206 (208)
                      |++.+...+....+..|.+++++|+++.++ ...+..++..++|.+++.+.   +||+.|++.++...+ ..+..++.||
T Consensus       107 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~  185 (394)
T PRK11652        107 GLGTGVGGVMARTLPRDLYEGTQLRHANSL-LNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPE  185 (394)
T ss_pred             HhhhhHHHHHHHHHHHHhcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            999888878888899999999999999888 67788888889998888764   899999887665554 3444556777


Q ss_pred             CC
Q psy2964         207 SA  208 (208)
Q Consensus       207 tp  208 (208)
                      +|
T Consensus       186 ~~  187 (394)
T PRK11652        186 TR  187 (394)
T ss_pred             cC
Confidence            53

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.75  E-value=6.3e-17  Score=134.51  Aligned_cols=152  Identities=22%  Similarity=0.296  Sum_probs=130.8

Q ss_pred             ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHh
Q psy2964          52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTG  131 (208)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  131 (208)
                      .+.+.+++++   +..+.++..+.+.++..+++++.|+++||+|||+.+..+.++.+++.++..+.++++.+.+.|++.|
T Consensus        43 ~~~i~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G  119 (496)
T PRK03893         43 LTEVQGEFGL---TTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIG  119 (496)
T ss_pred             HHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            4556677776   6677889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHhccCCC
Q psy2964         132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIVAIFTPES  207 (208)
Q Consensus       132 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~pet  207 (208)
                      ++.+...+....++.|.+|+++|++++++ ...+..+|..++|.+.+.+.   +||+.|++..+..++.++....+||+
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~p~~  197 (496)
T PRK03893        120 MGMAGEYGSSATYVIESWPKHLRNKASGF-LISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWLRKNLPEA  197 (496)
T ss_pred             HHHHHHHHHHHHHHHHHcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            99999889999999999999999999999 67788899999998888765   89998887655544444445556664

>KOG2615|consensus

Probab=99.75  E-value=1.7e-17  Score=129.21  Aligned_cols=115  Identities=24%  Similarity=0.325  Sum_probs=106.2

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYII  144 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  144 (208)
                      +....|.+.+.|++...+.++.+|.++||+|||+++..++...+++..+.+.+.|+..+...|++.|+..|.. ...-++
T Consensus        66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl-~v~rAi  144 (451)
T KOG2615|consen   66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNL-SVIRAI  144 (451)
T ss_pred             cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCch-HHHHHH
Confidence            4456789999999999999999999999999999999999999999999999999977777799999998877 677899


Q ss_pred             HHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh
Q psy2964         145 VLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA  181 (208)
Q Consensus       145 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~  181 (208)
                      ++|+.++|+|+.+++. ....+.+|.++||.+++++.
T Consensus       145 isdV~sek~r~l~ms~-v~~a~~lGfilGPmIGgyla  180 (451)
T KOG2615|consen  145 ISDVVSEKYRPLGMSL-VGTAFGLGFILGPMIGGYLA  180 (451)
T ss_pred             HHhhcChhhccceeee-eehhhhcchhhcchhhhHHH
Confidence            9999999999999999 78899999999999999986

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.75  E-value=7.1e-18  Score=134.75  Aligned_cols=152  Identities=16%  Similarity=0.166  Sum_probs=129.3

Q ss_pred             ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHh
Q psy2964          52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTG  131 (208)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  131 (208)
                      .+.+.+++++   +..+.+++.+++.++..++.++.|+++||+|||+.+..+.++..++.++..+.++++.+++.|++.|
T Consensus        18 ~~~~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   94 (379)
T TIGR00881        18 MPYLVEEIGL---SKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNG   94 (379)
T ss_pred             hHHHHHHhCC---CHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            3455666776   6778999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHH-HHHHhhh---hhHHHHHHHHHHHHH-HHHHHhccCC
Q psy2964         132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALP-WIAYYLA---DWQWISVITIFPLIV-GLIVAIFTPE  206 (208)
Q Consensus       132 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~-~~~~~~~---~w~~~~~~~~~~~~~-~~~~~~~~pe  206 (208)
                      ++.+...+...+++.|++|+++|++++++ ......+|..++| .++..+.   +|++.+++.+++.++ .++.+++.||
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (379)
T TIGR00881        95 IFQGMGWPPCGRTVTKWFSRSERGTWVSF-WNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRD  173 (379)
T ss_pred             hhccccCCchHHHHHHhcCHhhheeeEee-hhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCC
Confidence            99999889999999999999999999998 6778888888888 4554443   899998887766555 4445555665


Q ss_pred             C
Q psy2964         207 S  207 (208)
Q Consensus       207 t  207 (208)
                      +
T Consensus       174 ~  174 (379)
T TIGR00881       174 S  174 (379)
T ss_pred             C
Confidence            4

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.74  E-value=1.4e-16  Score=129.01  Aligned_cols=139  Identities=15%  Similarity=0.090  Sum_probs=115.5

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYII  144 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  144 (208)
                      +....++..+.+.+++.+..+++|+++||+|||++++.+.++..++.+++....+.   .+.|+++|++.+...|...++
T Consensus        36 s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~  112 (393)
T PRK11195         36 PDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGI  112 (393)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999998887776665553   678999999999999999999


Q ss_pred             HHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHHHHHHHhccCCC
Q psy2964         145 VLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLADWQ--WISVITIFPLIVGLIVAIFTPES  207 (208)
Q Consensus       145 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~w~--~~~~~~~~~~~~~~~~~~~~pet  207 (208)
                      +.|++|+++|++++++ .+....+|..+||.+++.+.+|.  ..+.+.+...++..+..+.+||+
T Consensus       113 i~~~~~~~~~~~a~~~-~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~~~~~~~~~l~~~  176 (393)
T PRK11195        113 LTELLPGEKLVKANGW-MEGSTIAAILLGTVLGGALADPHAEAALAVCALIYLLAALFNLFIPRL  176 (393)
T ss_pred             HHHHcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            9999999999999999 77788899999999999887544  34444443334444555667765

>PRK12382 putative transporter; Provisional

Probab=99.74  E-value=1.5e-16  Score=128.57  Aligned_cols=147  Identities=17%  Similarity=0.154  Sum_probs=117.3

Q ss_pred             eecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHh---h-----hccHHHHHHHH
Q psy2964          56 RRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTP---F-----SKDVVLFSLSR  127 (208)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~-----~~~~~~~~~~~  127 (208)
                      .+++++   +..+.++..+.+.++..+++++.|+++||+|||++++.+.+...++.+...   .     .++++.+++.|
T Consensus        43 ~~~lg~---s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r  119 (392)
T PRK12382         43 HHDLGF---GNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGR  119 (392)
T ss_pred             HHhcCC---cHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHH
Confidence            456676   688899999999999999999999999999999999998887766544321   1     24778899999


Q ss_pred             HHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHhcc
Q psy2964         128 FLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIVAIFT  204 (208)
Q Consensus       128 ~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~  204 (208)
                      +++|++.+...+...+++.|..|+++|++++++ .+.+...|..++|.+++++.   +|++.+.+..+..++........
T Consensus       120 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~-~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  198 (392)
T PRK12382        120 LILGFGESQLLTGALTWGLGLVGPKHSGKVMSW-NGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWAFNGTV  198 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCccccchhhhH-HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhc
Confidence            999999998888888999999999999999999 67788888899999888764   88887666544443333333334


Q ss_pred             CC
Q psy2964         205 PE  206 (208)
Q Consensus       205 pe  206 (208)
                      ||
T Consensus       199 ~~  200 (392)
T PRK12382        199 RK  200 (392)
T ss_pred             cC
Confidence            44

>PRK11043 putative transporter; Provisional

Probab=99.74  E-value=1.8e-16  Score=128.50  Aligned_cols=151  Identities=17%  Similarity=0.247  Sum_probs=127.1

Q ss_pred             ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHh
Q psy2964          52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTG  131 (208)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  131 (208)
                      ++.+.+++++   +..+.++..+++.++..+++++.|+++||+|||+.+..+..+..++..+..+.++++.+.+.|++.|
T Consensus        29 ~~~i~~~~~~---s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G  105 (401)
T PRK11043         29 FKAIQADLQT---SASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQA  105 (401)
T ss_pred             HHHHHHHHCC---CHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            4556667776   6778999999999999999999999999999999999999999998888888999999999999999


Q ss_pred             hhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHhccCC
Q psy2964         132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIVAIFTPE  206 (208)
Q Consensus       132 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~pe  206 (208)
                      ++.+...+....++.|.+|++++.+..+. ......++..++|.+++.+.   +|++.+++.++..++..+..++++|
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  182 (401)
T PRK11043        106 VGVCSAAVIWQALVIDRYPAQKANRVFAT-IMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKP  182 (401)
T ss_pred             hhhHHHHHHHHHHHHHhcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99888777888899999999999888877 45567788888888888764   8999998887776665544444444

>KOG1330|consensus

Probab=99.73  E-value=4.8e-19  Score=140.89  Aligned_cols=151  Identities=17%  Similarity=0.208  Sum_probs=132.1

Q ss_pred             ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHh
Q psy2964          52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTG  131 (208)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  131 (208)
                      ++.+.+.+++   +....+++++++.+..+++++++|+++|||.||+++.++..+..++.++.+++..+|++.++|.+.|
T Consensus        56 ~~~v~~~fni---~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vG  132 (493)
T KOG1330|consen   56 LKEVQTYFNI---SDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVG  132 (493)
T ss_pred             hHHHHHhcCC---CchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4455556666   6778999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHH-HHhccCC
Q psy2964         132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA----DWQWISVITIFPLIVGLI-VAIFTPE  206 (208)
Q Consensus       132 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~-~~~~~pe  206 (208)
                      +|.+...++.+.+++|.+|..+|++.+++ +.....+|..+|...+..+.    .|||.|+..+++.++..+ ..++.+|
T Consensus       133 iGeAs~~~ia~s~IaD~f~~~~Rs~~~~i-fy~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~e  211 (493)
T KOG1330|consen  133 IGEASYSPIAPSLIADSFPDDKRSRVLGI-FYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVRE  211 (493)
T ss_pred             cchhhhcccchhHhhhcCcchhhhHHHHH-hhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccC
Confidence            99999999999999999999999999999 77788888888877776665    599999998888777444 4444444

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.73  E-value=5.2e-17  Score=134.16  Aligned_cols=147  Identities=14%  Similarity=0.161  Sum_probs=124.5

Q ss_pred             cccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh--ccHHHHHHHHHHHhhhhh
Q psy2964          58 RDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS--KDVVLFSLSRFLTGVGHF  135 (208)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~  135 (208)
                      ++++   +..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++..++.++....  .+++.+++.|+++|++.+
T Consensus        70 ~~~~---s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~  146 (465)
T TIGR00894        70 NFKW---SGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQG  146 (465)
T ss_pred             CCCC---CHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcc
Confidence            4565   67788999999999999999999999999999999999999888888776543  567788999999999999


Q ss_pred             hHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHH-HHhccCCCC
Q psy2964         136 NAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA----DWQWISVITIFPLIVGLI-VAIFTPESA  208 (208)
Q Consensus       136 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~-~~~~~petp  208 (208)
                      ...+....+++|++|+++|++++++ ...+..+|..++|.+.+.+.    +||+.|++.+++.++..+ .++..+|+|
T Consensus       147 ~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p  223 (465)
T TIGR00894       147 SVSPATHKIIVKWAPPKERSRLLGM-STSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDP  223 (465)
T ss_pred             cchhhHHHHHHhcCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCc
Confidence            9999999999999999999999999 67788899999988887763    799999988877666444 334455544

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.73  E-value=1.7e-16  Score=128.45  Aligned_cols=149  Identities=11%  Similarity=0.030  Sum_probs=129.8

Q ss_pred             ccceeecccccccCCch-HHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHH
Q psy2964          52 RRRRRRRDNWVCDGSSN-LAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLT  130 (208)
Q Consensus        52 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  130 (208)
                      .+.+.+++++   +..+ .+.+.+++..++.+..++.|+++||+|.|+++.++.+...+..+++++++++..+.+.|++.
T Consensus        49 ~p~L~~elgl---T~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~ll  125 (511)
T TIGR00806        49 TPYLLTVLNF---TEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFY  125 (511)
T ss_pred             HHHHHHHcCC---CHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566678887   6667 89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh--hhHHHHH---HHHHHHHHHHHHHhccC
Q psy2964         131 GVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA--DWQWISV---ITIFPLIVGLIVAIFTP  205 (208)
Q Consensus       131 g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~--~w~~~~~---~~~~~~~~~~~~~~~~p  205 (208)
                      |++.|... ....++..++|+++|+++.|+ +..+..+|.+++++++.++.  +|++...   +......+++++.+++|
T Consensus       126 GvaEA~~~-A~~syI~~WfP~kER~ratsi-~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP  203 (511)
T TIGR00806       126 SVTMAARI-AYSSYIFSLVPPSRYQRAAAY-SRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLALFLK  203 (511)
T ss_pred             HHHHHHHH-HHHHHHHHHCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999998 999999999999999999999 67789999999988888755  8886543   33334444666667776

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK10504 putative transporter; Provisional

Probab=99.73  E-value=1.6e-16  Score=131.41  Aligned_cols=152  Identities=22%  Similarity=0.241  Sum_probs=128.7

Q ss_pred             cccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHH
Q psy2964          51 RRRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLT  130 (208)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  130 (208)
                      ..+.+.+++++   +..+.++..+.+.++..++.++.|+++||+|||+++..+..+..++.+++.+.++++.+.+.|+++
T Consensus        32 ~~p~~~~~~g~---s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~  108 (471)
T PRK10504         32 ALPSMAQSLGE---SPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQ  108 (471)
T ss_pred             HHHHHHHHhCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            35666677776   566788889999999999999999999999999999999999998888888889999999999999


Q ss_pred             hhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHH-HHHhccCC
Q psy2964         131 GVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGL-IVAIFTPE  206 (208)
Q Consensus       131 g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~-~~~~~~pe  206 (208)
                      |++.+...+....++.|.+|+++|+++.++ ......+|..++|.+++.+.   +||+.|.+......+.. ......|+
T Consensus       109 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~  187 (471)
T PRK10504        109 GVGGAMMVPVGRLTVMKIVPREQYMAAMTF-VTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPN  187 (471)
T ss_pred             HhhhHHHHHHHHHHHHHHcCHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999999998 66778889999999888775   89999988765554433 33334454

>PRK03699 putative transporter; Provisional

Probab=99.73  E-value=1.3e-16  Score=129.08  Aligned_cols=143  Identities=20%  Similarity=0.272  Sum_probs=123.4

Q ss_pred             ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHh
Q psy2964          52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTG  131 (208)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  131 (208)
                      .+.+.+++++   +..+.++..+.+.++..+++++.|++.||+|||+++..+.++.+++..+..+.++++.+.+.|++.|
T Consensus        30 ~~~i~~~~~~---s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G  106 (394)
T PRK03699         30 MGPIAEYFNL---PVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLG  106 (394)
T ss_pred             hHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence            4566777776   6778899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHH
Q psy2964         132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA----DWQWISVITIFPLIVGL  198 (208)
Q Consensus       132 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~~~~~~  198 (208)
                      ++.+...+....++.|.+|+++|+.+++. ......+|..++|.+.+.+.    +||+.|.+.+++.++..
T Consensus       107 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~  176 (394)
T PRK03699        107 VVSGITMSIGTFLITHVYEGKQRGSRLLF-TDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIF  176 (394)
T ss_pred             HhhHhhccchhHHhhhhcccchHHHHHHH-HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence            99998888889999999999999999887 55677788888887766542    89999988777665543

>TIGR00895 2A0115 benzoate transport

Probab=99.73  E-value=6.1e-17  Score=130.27  Aligned_cols=153  Identities=20%  Similarity=0.254  Sum_probs=130.6

Q ss_pred             ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHh
Q psy2964          52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTG  131 (208)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  131 (208)
                      .+.+.+++++   +..+.++..+++.++..++.++.|+++||+|||+.+..+.++..++.++..+.++++.+++.+++.|
T Consensus        40 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  116 (398)
T TIGR00895        40 APAISAEWGL---DPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAG  116 (398)
T ss_pred             HHHHhhccCC---CHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHh
Confidence            3455566665   5677899999999999999999999999999999999999999999888888899999999999999


Q ss_pred             hhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHH-HHHHHhccCCC
Q psy2964         132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIV-GLIVAIFTPES  207 (208)
Q Consensus       132 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~-~~~~~~~~pet  207 (208)
                      ++.+...+...+++.|.+|+++|++++++ ......+|..+++.+++.+.   +|++.+++.++...+ ..+...++||+
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (398)
T TIGR00895       117 LGLGGLMPNLNALVSEYAPKRFRGTAVGL-MFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPES  195 (398)
T ss_pred             cccccchhhHHHHHHHHcCHHhhchhHhh-HhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999999999 77788899999998887764   899888887544443 44455667775


Q ss_pred             C
Q psy2964         208 A  208 (208)
Q Consensus       208 p  208 (208)
                      |
T Consensus       196 ~  196 (398)
T TIGR00895       196 I  196 (398)
T ss_pred             C
Confidence            3

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.73  E-value=1.9e-16  Score=131.18  Aligned_cols=144  Identities=14%  Similarity=0.052  Sum_probs=114.4

Q ss_pred             ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHh
Q psy2964          52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTG  131 (208)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  131 (208)
                      .+.+.+++++   +..+.++..+.+.+++.+++++.|+++||+|||+++..+.++.+++.++.+++++++.++++|++.|
T Consensus        59 ~~~l~~~~gl---s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G  135 (476)
T PLN00028         59 LPIIRDNLNL---TKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIG  135 (476)
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            4566777887   6677888888999999999999999999999999999999999999888899999999999999999


Q ss_pred             hhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHH----HHHHHhh--------hhhHHHHHHHHHHHHHHHH
Q psy2964         132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVAL----PWIAYYL--------ADWQWISVITIFPLIVGLI  199 (208)
Q Consensus       132 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~----~~~~~~~--------~~w~~~~~~~~~~~~~~~~  199 (208)
                      ++.+.. .....+++|++|+++|++++++ ......+|..++    |.+...+        .+||+.|++.+++.++..+
T Consensus       136 ~~~~~~-~~~~~~i~~~~~~~~rg~a~g~-~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l  213 (476)
T PLN00028        136 FSLATF-VSCQYWMSTMFNGKIVGTANGI-AAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGI  213 (476)
T ss_pred             HHHHhh-HHHHHHHHHhcChhheeHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHH
Confidence            988765 3456788999999999999998 443444444444    4333221        2799999988777666443


Q ss_pred             H
Q psy2964         200 V  200 (208)
Q Consensus       200 ~  200 (208)
                      .
T Consensus       214 ~  214 (476)
T PLN00028        214 L  214 (476)
T ss_pred             H
Confidence            3

>PRK15075 citrate-proton symporter; Provisional

Probab=99.72  E-value=2.3e-16  Score=129.29  Aligned_cols=152  Identities=18%  Similarity=0.171  Sum_probs=112.7

Q ss_pred             ccceeecccccccCCchH-HHHHHH-----HHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHH----
Q psy2964          52 RRRRRRRDNWVCDGSSNL-AITRSI-----FFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVV----  121 (208)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~----  121 (208)
                      .+.+.++++.   ++.+. .+..+.     ..++..+++++.|+++||+|||+.++.+.++..++..+++++++++    
T Consensus        38 ~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~  114 (434)
T PRK15075         38 ATAIAKTFFP---AGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGL  114 (434)
T ss_pred             HHHHHHHhCC---CCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence            4556667765   33333 222222     2233357899999999999999999999999999999999998876    


Q ss_pred             ----HHHHHHHHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhh-----------hhhHHH
Q psy2964         122 ----LFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL-----------ADWQWI  186 (208)
Q Consensus       122 ----~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~-----------~~w~~~  186 (208)
                          .++++|+++|++.+...+....+++|++|+++|++++++ ......+|..+++.++..+           .+||+.
T Consensus       115 ~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~-~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~  193 (434)
T PRK15075        115 AAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSW-QSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIP  193 (434)
T ss_pred             HHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHH
Confidence                367899999999999888889999999999999999998 5656666666666555543           289999


Q ss_pred             HHHHHHHHHHHHHHHhccCCC
Q psy2964         187 SVITIFPLIVGLIVAIFTPES  207 (208)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~pet  207 (208)
                      |++.++...+..+.....||+
T Consensus       194 f~~~~~~~~~~~~~~~~~~e~  214 (434)
T PRK15075        194 FLIGCLIVPFIFLIRRSLEET  214 (434)
T ss_pred             HHHHHHHHHHHHHHHHhcCCC
Confidence            987655443333334445664

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.72  E-value=2.2e-16  Score=126.18  Aligned_cols=148  Identities=13%  Similarity=0.155  Sum_probs=115.8

Q ss_pred             eeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhc-cHHHHHHHHHHHhhh
Q psy2964          55 RRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSK-DVVLFSLSRFLTGVG  133 (208)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~  133 (208)
                      +.+++++   +..+.++..+++.++..+++++.|+++||+|||+.+..+.++..++.+++++.+ +++.+.+.|++.|++
T Consensus        28 ~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~  104 (366)
T TIGR00886        28 IKDDLGL---STAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIA  104 (366)
T ss_pred             HHHHhCC---CHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            5677787   677899999999999999999999999999999999999999999999999998 999999999999998


Q ss_pred             hhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh-------------hhHHHHHH-HHHHHHH-HH
Q psy2964         134 HFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA-------------DWQWISVI-TIFPLIV-GL  198 (208)
Q Consensus       134 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~-------------~w~~~~~~-~~~~~~~-~~  198 (208)
                      .+. .+....++.|++|+++|++++++ ......+|..+++.++..+.             +||+.+++ .++...+ ..
T Consensus       105 ~~~-~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  182 (366)
T TIGR00886       105 GGS-FASCMPWISFFFPKKIQGTALGL-AAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPAL  182 (366)
T ss_pred             chh-hHhHHHHHHHhcCHhhhhHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHH
Confidence            665 46678899999999999999998 55444555555544443221             69998843 3443333 44


Q ss_pred             HHHhccCCC
Q psy2964         199 IVAIFTPES  207 (208)
Q Consensus       199 ~~~~~~pet  207 (208)
                      +.....+|+
T Consensus       183 ~~~~~~~~~  191 (366)
T TIGR00886       183 LIFFVGADT  191 (366)
T ss_pred             HHHHhcccC
Confidence            444445554

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.72  E-value=1.3e-16  Score=129.28  Aligned_cols=148  Identities=18%  Similarity=0.117  Sum_probs=119.7

Q ss_pred             eeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh---c-----cHHHHHHH
Q psy2964          55 RRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS---K-----DVVLFSLS  126 (208)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~-----~~~~~~~~  126 (208)
                      +.+++++   +..+.++..+++.++..+++++.|+++||+|||++++.+.++.+++...+...   +     +++.+++.
T Consensus        42 i~~~~g~---s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  118 (399)
T PRK05122         42 VHDQLGF---SAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLG  118 (399)
T ss_pred             HHHhcCc---cHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHH
Confidence            3455665   67789999999999999999999999999999999999998887766554432   2     46678899


Q ss_pred             HHHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHhc
Q psy2964         127 RFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIVAIF  203 (208)
Q Consensus       127 ~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~  203 (208)
                      |+++|++.+...+....++.|..|+++|++++++ ......+|..++|.+++.+.   +|++.+++..+..++..+....
T Consensus       119 r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  197 (399)
T PRK05122        119 RLLLGIGESLAGTGSILWGIGRVGALHTGRVISW-NGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLARP  197 (399)
T ss_pred             HHHHHhhHHhhcchHHHHHHhhcChhhhccchhh-hhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999989999999999999999999998 67777888888888887764   8998887766655554444443


Q ss_pred             cCC
Q psy2964         204 TPE  206 (208)
Q Consensus       204 ~pe  206 (208)
                      .|+
T Consensus       198 ~~~  200 (399)
T PRK05122        198 RPA  200 (399)
T ss_pred             CCC
Confidence            444

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.72  E-value=4.4e-16  Score=126.41  Aligned_cols=147  Identities=16%  Similarity=0.201  Sum_probs=126.6

Q ss_pred             eecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhh
Q psy2964          56 RRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHF  135 (208)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~  135 (208)
                      .++.++   +..+.++..+...++..+.+++.|+++||+|||+++..+..+..++.+++...++++.+.+.|++.|++.+
T Consensus        38 ~~~~g~---s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~  114 (400)
T PRK11646         38 VDQLGW---AAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGT  114 (400)
T ss_pred             HHHhCC---cHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            345665   67789999999999999999999999999999999999999999999999989999999999999999988


Q ss_pred             hHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHH-HHHHhccCC
Q psy2964         136 NAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA--DWQWISVITIFPLIVG-LIVAIFTPE  206 (208)
Q Consensus       136 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~--~w~~~~~~~~~~~~~~-~~~~~~~pe  206 (208)
                      ...+...+++.|.+|+++|++++++ ......+|..++|.+++++.  +|++.|++.++..++. ++..+..||
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~~~~~~~  187 (400)
T PRK11646        115 LFDPPRTALVIKLIRPHQRGRFFSL-LMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFNAWLLPA  187 (400)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            8888889999999999999999999 67788899999999888775  8999988876665543 333444555

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.71  E-value=3.1e-16  Score=108.08  Aligned_cols=133  Identities=20%  Similarity=0.330  Sum_probs=114.1

Q ss_pred             HHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCch
Q psy2964          74 SIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKW  153 (208)
Q Consensus        74 ~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~  153 (208)
                      +.+.++..++.++.|++.||+|||+.+..+.....++.+.....++++.+.+.+++.|++.+...+....++.|..|+++
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   84 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEE   84 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh
Confidence            34567888999999999999999999999999998888888888899999999999999999988999999999999999


Q ss_pred             hhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHH-HHHHhccCCC
Q psy2964         154 RTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVG-LIVAIFTPES  207 (208)
Q Consensus       154 r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~-~~~~~~~pet  207 (208)
                      |++..++ ......+|..++|.+.+.+.   +|++.+++.+....+. ....+..||+
T Consensus        85 ~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (141)
T TIGR00880        85 RGVALGL-MSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET  141 (141)
T ss_pred             hhHHHHH-HHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            9999999 67788899999998888775   7888888877666654 4445556764

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.71  E-value=3.1e-16  Score=129.21  Aligned_cols=151  Identities=13%  Similarity=0.099  Sum_probs=120.5

Q ss_pred             cceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh----ccHHHHHHHHH
Q psy2964          53 RRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS----KDVVLFSLSRF  128 (208)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  128 (208)
                      +.+.++ ++   +..+.++..+.+.++..+++++.|+++||+|||++++.+.++.+++.+++++.    .+++.+++.|+
T Consensus        53 p~l~~~-g~---s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  128 (452)
T PRK11273         53 PYLVEQ-GF---SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLF  128 (452)
T ss_pred             HHHHHc-CC---CHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHH
Confidence            444444 55   67789999999999999999999999999999999999999999888877765    36778889999


Q ss_pred             HHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHH-HHHHHHHHhh---hhhHHHHHHHHHHHHH-HHHHHhc
Q psy2964         129 LTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSE-VALPWIAYYL---ADWQWISVITIFPLIV-GLIVAIF  203 (208)
Q Consensus       129 l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~-~~~~~~~~~~---~~w~~~~~~~~~~~~~-~~~~~~~  203 (208)
                      +.|++.+...+.....+.|++|+++|++++++ ++.+..+|. ..+|.+....   .+||+.|++.+++.++ .++..++
T Consensus       129 l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~  207 (452)
T PRK11273        129 LCGWFQGMGWPPCGRTMVHWWSQKERGGIVSV-WNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAM  207 (452)
T ss_pred             HHHHHHhccchHHHHHHHHhCChHHHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999888878778889999999999999999 676777775 4455543222   2999999987766555 4555566


Q ss_pred             cCCCC
Q psy2964         204 TPESA  208 (208)
Q Consensus       204 ~petp  208 (208)
                      +||+|
T Consensus       208 ~~~~~  212 (452)
T PRK11273        208 MRDTP  212 (452)
T ss_pred             ccCCH
Confidence            67654

>KOG2532|consensus

Probab=99.71  E-value=2e-16  Score=129.71  Aligned_cols=149  Identities=22%  Similarity=0.298  Sum_probs=128.6

Q ss_pred             eecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhc--cHHHHHHHHHHHhhh
Q psy2964          56 RRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSK--DVVLFSLSRFLTGVG  133 (208)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~  133 (208)
                      ..++++   ++.+.+++.+.+..|+++++++.|++.||+|-|+++..+.++.+++.+++..+.  +++.+++.|+++|++
T Consensus        65 ~~~~~w---s~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~  141 (466)
T KOG2532|consen   65 AGEYDW---SSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLG  141 (466)
T ss_pred             CceecC---CHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHH
Confidence            456777   788999999999999999999999999999999999999999999999988863  556778999999999


Q ss_pred             hhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHH-hccCCCC
Q psy2964         134 HFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA----DWQWISVITIFPLIVGLIVA-IFTPESA  208 (208)
Q Consensus       134 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~-~~~petp  208 (208)
                      .|..+|....+...+.|+++|++..++ ...+..+|.+++-.+++++-    ||++.|++.++..++..+++ ++..|+|
T Consensus       142 ~g~~~pa~~~i~~~W~P~~Ers~~~ai-l~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P  220 (466)
T KOG2532|consen  142 QGVLFPAIGSILAKWAPPNERSTFIAI-LTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSP  220 (466)
T ss_pred             HhHHHhhhhceeeeECCHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            999999999999999999999999999 56577788888876776664    89999999998888855444 4445554

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.71  E-value=8.7e-16  Score=132.08  Aligned_cols=138  Identities=17%  Similarity=0.152  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHHHHhhc
Q psy2964          70 AITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIVLECV  149 (208)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~  149 (208)
                      .....+..++.+++.++.|+++||+|||++++.+.++.+++.++.++.++...+++.+++.|++.+...+..+++++|++
T Consensus       598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~  677 (742)
T TIGR01299       598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY  677 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            34456677899999999999999999999999999999999988888888888888888888888888899999999999


Q ss_pred             CCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHhccCCCC
Q psy2964         150 GPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA--DWQWISVITIFPLIVGLIVAIFTPESA  208 (208)
Q Consensus       150 ~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~--~w~~~~~~~~~~~~~~~~~~~~~petp  208 (208)
                      |++.|++++|+ ......+|.+++|.+++.+.  +...++++.++..+++.++..++|||.
T Consensus       678 Pt~~Rgta~Gi-~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~~~LPET~  737 (742)
T TIGR01299       678 PSDKRATAFGF-LNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLALKLPDTR  737 (742)
T ss_pred             CHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            99999999999 56688899999999987664  334567777776666666666779973

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10054 putative transporter; Provisional

Probab=99.70  E-value=7.4e-16  Score=124.88  Aligned_cols=147  Identities=11%  Similarity=0.049  Sum_probs=123.9

Q ss_pred             eecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhh
Q psy2964          56 RRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHF  135 (208)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~  135 (208)
                      .+++++   +..+.++..+++.++..+++++.|+++||+|||+++..+.+...++.++.++.++++.+++++.+.|.+.+
T Consensus        35 ~~~~g~---s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  111 (395)
T PRK10054         35 SRQYSL---SVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYS  111 (395)
T ss_pred             HHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            345676   67789999999999999999999999999999999999999998988888889999888888988888777


Q ss_pred             hHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHH-HHHhccCC
Q psy2964         136 NAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA--DWQWISVITIFPLIVGL-IVAIFTPE  206 (208)
Q Consensus       136 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~--~w~~~~~~~~~~~~~~~-~~~~~~pe  206 (208)
                      ...+....+..|..|+++|++++++ ......+|..++|.+++++.  +|+..|++.++..++.. +..+.+||
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~~~~~~~  184 (395)
T PRK10054        112 VFSTVLKAWFADNLSSTSKTKIFSL-NYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFIQIWVQR  184 (395)
T ss_pred             HHHHHHHHHHHHhcCHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhc
Confidence            7778889999999999999999999 56677889999999988875  89999988776666643 33344444

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.70  E-value=4.2e-16  Score=123.13  Aligned_cols=141  Identities=24%  Similarity=0.375  Sum_probs=124.8

Q ss_pred             eeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhh
Q psy2964          55 RRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGH  134 (208)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~  134 (208)
                      +.++++.   +..+.++..+...++..++.++.|+++||+|||+.+..+..+..++.......++++.+.+.|++.|++.
T Consensus        25 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~  101 (352)
T cd06174          25 LAEDLGL---SASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGG  101 (352)
T ss_pred             HHHHcCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHccc
Confidence            3344444   5678899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHH
Q psy2964         135 FNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLI  199 (208)
Q Consensus       135 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~  199 (208)
                      +...+....++.|.+|+++|++.+++ ......+|..++|.+++.+.   +|++.+++.+++.++..+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (352)
T cd06174         102 GALYPAAAALIAEWFPPKERGRALGL-FSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLAL  168 (352)
T ss_pred             ccccHhHHHHHHHhCCccchhhhhhH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999 67788999999999988876   699988887766655443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.70  E-value=1.3e-15  Score=124.08  Aligned_cols=143  Identities=14%  Similarity=-0.009  Sum_probs=123.0

Q ss_pred             ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhh---hccHHHHHHHHH
Q psy2964          52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPF---SKDVVLFSLSRF  128 (208)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  128 (208)
                      .+.+.+++++   +..+.++..+.+.+++.+++++.|++.||+|||++++.+.++.+++.++...   .++++.+++.|+
T Consensus        26 ~~~~~~~~~~---s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~  102 (410)
T TIGR00885        26 VPQFQQAFTL---TAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLF  102 (410)
T ss_pred             HHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence            4566777787   6778999999999999999999999999999999999999999999877543   368899999999


Q ss_pred             HHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhh----------------------------
Q psy2964         129 LTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL----------------------------  180 (208)
Q Consensus       129 l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~----------------------------  180 (208)
                      +.|++.+...+..+.++.+..|+++|++.+++ .+....+|..++|.++..+                            
T Consensus       103 l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (410)
T TIGR00885       103 ILTAGLGFLETAANPYILVMGPESTATRRLNL-AQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSD  181 (410)
T ss_pred             HHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHH
Confidence            99999999999999999999999999999998 6778888998888887655                            


Q ss_pred             -hhhHHHHHHHHHHHHHHH
Q psy2964         181 -ADWQWISVITIFPLIVGL  198 (208)
Q Consensus       181 -~~w~~~~~~~~~~~~~~~  198 (208)
                       .+||++|++.+++.++..
T Consensus       182 ~~~w~~~fl~~a~~~~~~~  200 (410)
T TIGR00885       182 LASVQTPYMIIGAVVLAVA  200 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence             149999988777655533

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.69  E-value=5e-16  Score=127.43  Aligned_cols=143  Identities=13%  Similarity=0.128  Sum_probs=118.8

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh----ccHHHHHHHHHHHhhhhhhHHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS----KDVVLFSLSRFLTGVGHFNAFIF  140 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~g~~~~~~~~~  140 (208)
                      +..+.++..+++.++..+++++.|+++||+|||+++..+.++.+++.++.+..    .+++.+.+.|++.|++.+...+.
T Consensus        59 s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~  138 (438)
T TIGR00712        59 SKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPP  138 (438)
T ss_pred             CHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHH
Confidence            67788999999999999999999999999999999999999988888776654    45677788899999998888888


Q ss_pred             HHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHh-h---hhhHHHHHHHHHHHHH-HHHHHhccCCCC
Q psy2964         141 YYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYY-L---ADWQWISVITIFPLIV-GLIVAIFTPESA  208 (208)
Q Consensus       141 ~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~-~---~~w~~~~~~~~~~~~~-~~~~~~~~petp  208 (208)
                      ....+.|++|+++|++++++ ++....+|..++|.+.+. .   .+||+.|++.+++.++ .++.++++||+|
T Consensus       139 ~~~~i~~~~~~~~rg~~~~~-~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~  210 (438)
T TIGR00712       139 CGRTMVHWWSQSERGTIVSI-WNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTP  210 (438)
T ss_pred             HHHHHHHhcCcccchhHHHH-HHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence            88999999999999999999 677888888887766543 2   2899999988777665 444556667653

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>KOG2533|consensus

Probab=99.69  E-value=2.7e-16  Score=129.39  Aligned_cols=143  Identities=22%  Similarity=0.311  Sum_probs=128.7

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYII  144 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  144 (208)
                      ...+.+.+.++++++++++.++++.+.||++..+.+....++..+..++....+|++.+++.|++.|+..+..+|....+
T Consensus        79 ~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~  158 (495)
T KOG2533|consen   79 VGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAI  158 (495)
T ss_pred             hhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHH
Confidence            45678999999999999999999999999998888888888888887777779999999999999999999999999999


Q ss_pred             HHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhh---------hhhHHHHHHHHHHHHH-HHHHHhccCCCC
Q psy2964         145 VLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL---------ADWQWISVITIFPLIV-GLIVAIFTPESA  208 (208)
Q Consensus       145 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~---------~~w~~~~~~~~~~~~~-~~~~~~~~petp  208 (208)
                      ++.++.+++|+..+++ +.....+|+++|.+++..+         .||||.|++.+++.++ ++++.+++|+.|
T Consensus       159 lg~wy~~~e~g~r~~~-~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P  231 (495)
T KOG2533|consen  159 LGNWYGKSERGLRMGI-WYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNP  231 (495)
T ss_pred             HHhhcChhhhhhhHHH-HHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCCh
Confidence            9999999999999999 7778889999999888873         2999999999888777 667778899887

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.69  E-value=1.8e-15  Score=121.26  Aligned_cols=150  Identities=12%  Similarity=0.104  Sum_probs=117.3

Q ss_pred             eeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHH-HHHHHHHHHHHHhhhccHHHHHHHHHHHhhh
Q psy2964          55 RRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLG-SHVVSFLGVALTPFSKDVVLFSLSRFLTGVG  133 (208)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~  133 (208)
                      +.++++.   +..+.++..+++.+...+.+++.|+++||+|||+.++. +.....++..+...+++++.+++.|++.|.+
T Consensus        24 l~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  100 (375)
T TIGR00899        24 LSEEVRA---RPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSF  100 (375)
T ss_pred             HHcccCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhh
Confidence            3456676   67789999999999999999999999999999887654 5555566667778889999888999988877


Q ss_pred             hhhHHHHHHHHHHhhcCCchhhhH--HhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHH-HHHHhccCCC
Q psy2964         134 HFNAFIFYYIIVLECVGPKWRTFA--MTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVG-LIVAIFTPES  207 (208)
Q Consensus       134 ~~~~~~~~~~~~~e~~~~~~r~~~--~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~-~~~~~~~pet  207 (208)
                      .+...+....+..|..|++.|+..  .+. ......+|..++|.+++.+.   +||+.|++.+++.++. ++.++.+||.
T Consensus       101 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~  179 (375)
T TIGR00899       101 ASTANPQLFALAREHADRTGREAVMFSSV-MRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSY  179 (375)
T ss_pred             hhhhHHHHHHHHHHHhhhcchhhHHHHHH-HHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            777778888888999888777754  355 45566788899988888775   8999999987776654 4445557775


Q ss_pred             C
Q psy2964         208 A  208 (208)
Q Consensus       208 p  208 (208)
                      |
T Consensus       180 ~  180 (375)
T TIGR00899       180 P  180 (375)
T ss_pred             c
Confidence            4

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10133 L-fucose transporter; Provisional

Probab=99.68  E-value=2.3e-15  Score=123.51  Aligned_cols=123  Identities=11%  Similarity=0.066  Sum_probs=108.1

Q ss_pred             ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHH---hhhccHHHHHHHHH
Q psy2964          52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALT---PFSKDVVLFSLSRF  128 (208)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  128 (208)
                      .+.+.+++++   +..+.++..+.+.+++.+++++.|++.||+|||+++..+.++..++.+++   ...++++.++++|+
T Consensus        49 ~p~i~~~~~~---s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~  125 (438)
T PRK10133         49 LPQFQQAFTL---TNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLF  125 (438)
T ss_pred             HHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            4566677777   67889999999999999999999999999999999999999999998765   45789999999999


Q ss_pred             HHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHH
Q psy2964         129 LTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAY  178 (208)
Q Consensus       129 l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~  178 (208)
                      ++|++.+...+..+.++.|..|+++|...+++ .+..+.+|..++|.++.
T Consensus       126 l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~-~~~~~~~G~~~g~~~g~  174 (438)
T PRK10133        126 IIAAGLGCLETAANPFVTVLGPESSGHFRLNL-AQTFNSFGAIIAVVFGQ  174 (438)
T ss_pred             HHHHHHHHHHhhHHHHHHHhCChhhHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            99999999999999999998877777777878 67788888888887754

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.67  E-value=1.2e-19  Score=149.12  Aligned_cols=142  Identities=30%  Similarity=0.594  Sum_probs=127.0

Q ss_pred             CchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhc---cHHHHHHHHHHHhhhhhhHHHHHH
Q psy2964          66 SSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSK---DVVLFSLSRFLTGVGHFNAFIFYY  142 (208)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~g~~~~~~~~~~~  142 (208)
                      +...++..+...+|..+|++++|.++||+|||+.++.+.++..++.++.++++   +++.+.++|++.|++.|...+...
T Consensus        45 ~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~  124 (451)
T PF00083_consen   45 SLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSP  124 (451)
T ss_pred             HHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            34578889999999999999999999999999999999999999999999999   999999999999999999999999


Q ss_pred             HHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---h---hHHHHHHHHHHHHHHHHHHhccCCCC
Q psy2964         143 IIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---D---WQWISVITIFPLIVGLIVAIFTPESA  208 (208)
Q Consensus       143 ~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~---w~~~~~~~~~~~~~~~~~~~~~petp  208 (208)
                      .++.|..|+++|++..++ .+..+.+|..++..++....   +   ||+.+.+.+++.++.++..+++||||
T Consensus       125 ~~~~E~~~~~~R~~~~~~-~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP  195 (451)
T PF00083_consen  125 IYISEIAPPKHRGFLSSL-FQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESP  195 (451)
T ss_pred             cccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999887 77777888777766655442   4   99999998888877777778899998

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.67  E-value=1.6e-15  Score=125.13  Aligned_cols=142  Identities=23%  Similarity=0.207  Sum_probs=118.7

Q ss_pred             ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHH-HHHHH
Q psy2964          52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSL-SRFLT  130 (208)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~  130 (208)
                      .+.+.+++++   +..+.++..+.+.++..++.++.|+++||+|||++++.+.++..++.++++++++++.+++ .|++.
T Consensus        42 ~~~i~~~~g~---s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  118 (455)
T TIGR00892        42 FKELQQIFQA---TYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFIT  118 (455)
T ss_pred             HHHHHHHhCc---chhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            4556667776   6678889999999999999999999999999999999999999999988888888888765 46899


Q ss_pred             hhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHH
Q psy2964         131 GVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGL  198 (208)
Q Consensus       131 g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~  198 (208)
                      |++.+...+....++.++++ ++|++++++ ...+..+|..++|.+.+.+.   +||+.|++.+++.++..
T Consensus       119 G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~-~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~  187 (455)
T TIGR00892       119 GLGLAFNFQPSLTMLGKYFY-RRRPLANGL-AMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCC  187 (455)
T ss_pred             HhcchhhhhHHHHHHHHHHH-hhHHHHHHH-HHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence            99988766677788889985 789999999 67788888888888877654   89999998877665543

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.67  E-value=4.6e-15  Score=120.27  Aligned_cols=153  Identities=17%  Similarity=0.037  Sum_probs=121.9

Q ss_pred             ccceeecccccccCC--chHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHH
Q psy2964          52 RRRRRRRDNWVCDGS--SNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFL  129 (208)
Q Consensus        52 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  129 (208)
                      ++.+.+++++...+.  ...++..+++.++..+++++.|+++||+|||+++..+.+..+++.++....++++.+++.|++
T Consensus        37 l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (408)
T PRK09874         37 LPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRAL  116 (408)
T ss_pred             HHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            455556666521111  124788899999999999999999999999999999999999998888888999999999999


Q ss_pred             HhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHH-HHHhccC
Q psy2964         130 TGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGL-IVAIFTP  205 (208)
Q Consensus       130 ~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~-~~~~~~p  205 (208)
                      .|++.+. .+....++.+.+|+++|++++++ ......+|..++|.+++.+.   +|++.+++.++..++.. ...++.|
T Consensus       117 ~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (408)
T PRK09874        117 LGLLGGF-VPNANALIATQVPRNKSGWALGT-LSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIR  194 (408)
T ss_pred             HHHhhhh-HHhHHHHHHHhcCHhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9987654 57778889999999999999998 67778889999998888764   89999888777665533 3444455


Q ss_pred             C
Q psy2964         206 E  206 (208)
Q Consensus       206 e  206 (208)
                      |
T Consensus       195 ~  195 (408)
T PRK09874        195 E  195 (408)
T ss_pred             c
Confidence            4

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.66  E-value=4.5e-15  Score=119.68  Aligned_cols=126  Identities=13%  Similarity=0.187  Sum_probs=114.4

Q ss_pred             ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHh
Q psy2964          52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTG  131 (208)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  131 (208)
                      .+.+.+++++   +..+.++..+.+.++..+++++.|+++||+|||+++..+.++..++..+.+.+++++.++++|+++|
T Consensus        29 lp~~~~~~~~---s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G  105 (381)
T PRK03633         29 VPLWLAQEHL---PTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAG  105 (381)
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            5666677776   6778999999999999999999999999999999999999999999999899999999999999999


Q ss_pred             hhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh
Q psy2964         132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA  181 (208)
Q Consensus       132 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~  181 (208)
                      ++.+...+.....+.+..++++|+++++. +.....+|..++|.+++.+.
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~l~  154 (381)
T PRK03633        106 IGCAMIWVVVESALMCSGTSRNRGRLLAA-YMMVYYLGTVLGQLLVSKVS  154 (381)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHHHHHHHHHHHHhccc
Confidence            99998888888888899999999999999 67788999999999998875

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.66  E-value=1.3e-15  Score=124.11  Aligned_cols=151  Identities=13%  Similarity=0.068  Sum_probs=123.2

Q ss_pred             cceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhh-----hccHHHHHHHH
Q psy2964          53 RRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPF-----SKDVVLFSLSR  127 (208)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~  127 (208)
                      +.+..+++.   +..+.++..+.+.++..+++++.|+++||+|||+++..+.++.+++......     .++++.+.+.|
T Consensus        41 ~~~~~~~~~---s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  117 (417)
T PRK10489         41 PVQIQMMTG---STLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLG  117 (417)
T ss_pred             HHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence            344444443   5678899999999999999999999999999999999888777766554432     46788888999


Q ss_pred             HHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHhcc
Q psy2964         128 FLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIVAIFT  204 (208)
Q Consensus       128 ~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~  204 (208)
                      ++.|++.+...+....++.|..|+++|+++.++ ......+|..++|.+++.+.   +|++.+++.++..++..+..+.+
T Consensus       118 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l  196 (417)
T PRK10489        118 LWDGFFGSLGVTALLAATPALVGRENLMQAGAI-TMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRL  196 (417)
T ss_pred             HHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHH-HHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhC
Confidence            999999888888889999999999999999998 66788899999999988764   78999888777766666556666


Q ss_pred             CCC
Q psy2964         205 PES  207 (208)
Q Consensus       205 pet  207 (208)
                      ||+
T Consensus       197 ~~~  199 (417)
T PRK10489        197 PAL  199 (417)
T ss_pred             CCC
Confidence            664

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.66  E-value=4e-15  Score=119.47  Aligned_cols=131  Identities=19%  Similarity=0.253  Sum_probs=108.3

Q ss_pred             HHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHH--------HHHHHHHHHhhhhhhHHHHHHHHHHhh
Q psy2964          77 FLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVV--------LFSLSRFLTGVGHFNAFIFYYIIVLEC  148 (208)
Q Consensus        77 ~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~g~~~~~~~~~~~~~~~e~  148 (208)
                      .++..+++++.|+++||+|||+++..+.++..++..+.++.++++        .+++.|+++|++.+...+....++.|.
T Consensus        45 ~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~  124 (394)
T TIGR00883        45 FLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEY  124 (394)
T ss_pred             HHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhc
Confidence            344457899999999999999999999999999999999888764        477889999999999889999999999


Q ss_pred             cCCchhhhHHhHHHHHHHHHHHHHHHHHHHhh-----------hhhHHHHHHHHHHHHHHHHHHhccCCCC
Q psy2964         149 VGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL-----------ADWQWISVITIFPLIVGLIVAIFTPESA  208 (208)
Q Consensus       149 ~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~-----------~~w~~~~~~~~~~~~~~~~~~~~~petp  208 (208)
                      +|+++|++..++ ...+..+|..+++.+...+           .+||+.+++.+++.++..+.....||+|
T Consensus       125 ~~~~~r~~~~~~-~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  194 (394)
T TIGR00883       125 APPGKRGFYGSF-QQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETP  194 (394)
T ss_pred             CCcccchHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence            999999999988 6778888888888766543           1799998887776666555555666653

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.65  E-value=3.3e-16  Score=133.53  Aligned_cols=151  Identities=16%  Similarity=0.139  Sum_probs=126.6

Q ss_pred             ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhc-------------
Q psy2964          52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSK-------------  118 (208)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-------------  118 (208)
                      .+++.++|++   ++.+.+++.+.+.+++.++.++.+++.||+|||+.+.++.++.+++++++++.+             
T Consensus        56 l~~iek~F~l---ss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~  132 (633)
T TIGR00805        56 LTTIERRFKL---STSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVS  132 (633)
T ss_pred             chhhhhhhCC---CCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccc
Confidence            5677778887   677899999999999999999999999999999999999999999998877653             


Q ss_pred             --------------------------------------cHHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhH
Q psy2964         119 --------------------------------------DVVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTF  160 (208)
Q Consensus       119 --------------------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~  160 (208)
                                                            .+..++++|+++|++.+...+...+++.|.+|+++|++++++
T Consensus       133 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i  212 (633)
T TIGR00805       133 STGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGI  212 (633)
T ss_pred             ccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHH
Confidence                                                  245667899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhh-------------------------hhHHHHHHHHHHHHHHHHHHhccCC
Q psy2964         161 PFLIFYTVSEVALPWIAYYLA-------------------------DWQWISVITIFPLIVGLIVAIFTPE  206 (208)
Q Consensus       161 ~~~~~~~~g~~~~~~~~~~~~-------------------------~w~~~~~~~~~~~~~~~~~~~~~pe  206 (208)
                       +.....+|..+++++++.+.                         .|+..|++.+++.++..+.++++|+
T Consensus       213 -~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~  282 (633)
T TIGR00805       213 -LESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPK  282 (633)
T ss_pred             -HHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence             67788899999988887653                         2566677777766664444555554

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.64  E-value=4.7e-14  Score=115.37  Aligned_cols=111  Identities=10%  Similarity=-0.007  Sum_probs=97.3

Q ss_pred             cccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh-----ccHHHHHHHHHHHhh
Q psy2964          58 RDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS-----KDVVLFSLSRFLTGV  132 (208)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~  132 (208)
                      ++++   +..+.+++.+++.+++.++.++.|++.||+|+|+++..+.++..+..++.+++     ++++.+++.|++.|+
T Consensus        64 ~~~l---s~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gi  140 (462)
T PRK15034         64 GFNF---TTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGF  140 (462)
T ss_pred             hcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHH
Confidence            6777   67789999999999999999999999999999999999999999999888876     799999999999999


Q ss_pred             hhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHH
Q psy2964         133 GHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVAL  173 (208)
Q Consensus       133 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~  173 (208)
                      + +..++.....+++++|+++|++++|+ ......+|..++
T Consensus       141 g-g~~f~~~~~~vs~wfp~~~rG~A~Gi-~~g~G~~G~~l~  179 (462)
T PRK15034        141 A-GANFASSMGNISFFFPKAKQGSALGI-NGGLGNLGVSVM  179 (462)
T ss_pred             H-HHhHHHHHHHHHHHCCHhHhHHHHHH-HHHHHhhHHHHH
Confidence            8 66789999999999999999999999 433444454433

>KOG3764|consensus

Probab=99.64  E-value=1.6e-15  Score=118.98  Aligned_cols=140  Identities=17%  Similarity=0.151  Sum_probs=126.4

Q ss_pred             cCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHH
Q psy2964          64 DGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYI  143 (208)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~  143 (208)
                      +++.+.+++.+...+.+.+..++.|.+.||+|+|..+++|+.++.++.++.++..+++.++++|.++|++.+.......+
T Consensus       103 ~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsgla  182 (464)
T KOG3764|consen  103 RENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLA  182 (464)
T ss_pred             ccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCch-hhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHH-HHHHHhcc
Q psy2964         144 IVLECVGPKW-RTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIV-GLIVAIFT  204 (208)
Q Consensus       144 ~~~e~~~~~~-r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~-~~~~~~~~  204 (208)
                      ++++.+|.++ |++++|+.. .+..+|..++|.+++.+.   |.+.+|++.+++.++ +.+..+.+
T Consensus       183 mlAd~f~~d~er~~vmGial-gfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi  247 (464)
T KOG3764|consen  183 MLADVFPEDNERGSVMGIAL-GFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVI  247 (464)
T ss_pred             HHHHHcccchhhhHHHHHHH-HHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHhee
Confidence            9999998665 799999954 478899999999999987   888999999888877 44444444

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.64  E-value=4.5e-15  Score=123.25  Aligned_cols=135  Identities=17%  Similarity=0.039  Sum_probs=112.0

Q ss_pred             ecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhh-hCchHHHHHHHHHHHHHHHHHhhhccHHH-HHHHHHHHhhhh
Q psy2964          57 RRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADR-YGRITAVLGSHVVSFLGVALTPFSKDVVL-FSLSRFLTGVGH  134 (208)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~g~~~  134 (208)
                      +++++   +....++..+.+.....+..+++|+++|| +|||++++.+.++..++++++++..+... +.+.|.++|++.
T Consensus        43 ~~lg~---~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~  119 (489)
T PRK10207         43 KQLGF---SQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGN  119 (489)
T ss_pred             HHcCC---CHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhcc
Confidence            34565   56667888888888888888999999999 99999999999999999999888765443 457899999999


Q ss_pred             hhHHHHHHHHHHhhcCCch--hhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHH
Q psy2964         135 FNAFIFYYIIVLECVGPKW--RTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLI  195 (208)
Q Consensus       135 ~~~~~~~~~~~~e~~~~~~--r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~  195 (208)
                      |...+...+++.|.+|+++  |..++++ +..+.++|..++|.+++++.   ||++.|++.++..+
T Consensus       120 g~~~~~~~~li~~~~p~~~~~~~~~~~~-~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~  184 (489)
T PRK10207        120 GLFKANPASLLSKCYPPKDPRLDGAFTL-FYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLI  184 (489)
T ss_pred             ccccCCHHHHHHHhcCCCchhhhcchhH-HHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHH
Confidence            9998899999999998774  4667777 67788899999988888876   89999988654333

>TIGR00896 CynX cyanate transporter

Probab=99.63  E-value=1.9e-14  Score=114.87  Aligned_cols=141  Identities=13%  Similarity=0.115  Sum_probs=116.9

Q ss_pred             hcccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHH
Q psy2964          50 RRRRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFL  129 (208)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  129 (208)
                      ...+.+.+++++   +..+.++..+++.++..+++++.|+++||+|||+++..+.+...++.+.. ..++.+.+++.|++
T Consensus        21 ~~lp~l~~~~~~---s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~   96 (355)
T TIGR00896        21 PLLPQIRSALGM---SFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTAL   96 (355)
T ss_pred             ccHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHH
Confidence            335667778887   67889999999999999999999999999999999999998888877766 67888888999999


Q ss_pred             HhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHH
Q psy2964         130 TGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA-----DWQWISVITIFPLIV  196 (208)
Q Consensus       130 ~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~w~~~~~~~~~~~~~  196 (208)
                      .|++.+...+....++.|.+| ++|++++++ ++....+|..+++.+.+.+.     +||+.|.+.++..++
T Consensus        97 ~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~  166 (355)
T TIGR00896        97 IGVGIAIINVLLPSLIKRDFP-QRVGLMTGL-YSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALL  166 (355)
T ss_pred             HHHHHHHHhccchHHHHHhCc-chhhHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence            999998887788888889886 689999998 67777888888887766553     388888766554433

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.62  E-value=1.3e-14  Score=120.15  Aligned_cols=137  Identities=16%  Similarity=0.094  Sum_probs=119.0

Q ss_pred             ccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhh-hCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhH
Q psy2964          59 DNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADR-YGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNA  137 (208)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~  137 (208)
                      +++   +..+.++..+.+.++..++++++|+++|| +|||+++.++.++.+++.++.++.++++.+.+.+.+.|++.+..
T Consensus        43 lg~---s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~  119 (475)
T TIGR00924        43 LGF---SQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLF  119 (475)
T ss_pred             CCC---CHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccc
Confidence            565   67789999999999999999999999999 89999999999999999999988888888888999999999988


Q ss_pred             HHHHHHHHHhhcCCch---hhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHH
Q psy2964         138 FIFYYIIVLECVGPKW---RTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLI  199 (208)
Q Consensus       138 ~~~~~~~~~e~~~~~~---r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~  199 (208)
                      .+...++++|.+|+++   |+.+.++ +.....+|..++|.+++.+.   +|++.|.+.++..+++.+
T Consensus       120 ~~~~~~~~a~~~~~~~~~~r~~~~~~-~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l  186 (475)
T TIGR00924       120 KANPSSMVGKLYERGDMPRRDGGFTL-FYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLL  186 (475)
T ss_pred             cCCHHHHHHHhcCCCCcccccceehh-HHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence            8999999999998754   8888888 66788899999999998875   899999887655444433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG0252|consensus

Probab=99.61  E-value=2.3e-15  Score=119.94  Aligned_cols=142  Identities=22%  Similarity=0.349  Sum_probs=115.9

Q ss_pred             CchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhc-------cHHHHHHHHHHHhhhhhhHH
Q psy2964          66 SSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSK-------DVVLFSLSRFLTGVGHFNAF  138 (208)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~g~~~~~~~  138 (208)
                      +...+.+..+..+|.++|++++|++.||+|||+++...++++.++++++++..       -.+++.+.|++.|+|.|+-+
T Consensus        83 s~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDY  162 (538)
T KOG0252|consen   83 SGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDY  162 (538)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCC
Confidence            34567788899999999999999999999999999999999999998777752       24677789999999999999


Q ss_pred             HHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhh----h--------------hhHHHHHHHHHHHHHHHHH
Q psy2964         139 IFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL----A--------------DWQWISVITIFPLIVGLIV  200 (208)
Q Consensus       139 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~----~--------------~w~~~~~~~~~~~~~~~~~  200 (208)
                      |+..+..+|....+.|+...+..++ ..++|...|..++..+    .              -||..+.+.+++++..+..
T Consensus       163 PlSAtI~SE~an~~~RGa~iaavFa-~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~  241 (538)
T KOG0252|consen  163 PLSATIMSESANKKTRGAFIAAVFA-MQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYF  241 (538)
T ss_pred             cchHHHhhhhhhhccccceeEEEEE-ecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999987776322 4444444443333322    1              4999999999999988888


Q ss_pred             HhccCCCC
Q psy2964         201 AIFTPESA  208 (208)
Q Consensus       201 ~~~~petp  208 (208)
                      -..+|||+
T Consensus       242 Rl~M~Et~  249 (538)
T KOG0252|consen  242 RLKMPETA  249 (538)
T ss_pred             hhcCCcch
Confidence            88899985

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.61  E-value=2.1e-14  Score=130.26  Aligned_cols=114  Identities=20%  Similarity=0.092  Sum_probs=100.0

Q ss_pred             chHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHh---hhccHHHHHHHHHHHhhhhhhHHHHHHH
Q psy2964          67 SNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTP---FSKDVVLFSLSRFLTGVGHFNAFIFYYI  143 (208)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~g~~~~~~~~~~~~  143 (208)
                      ...+++.+++.++..++++++|+++||+|||++++++.++.++..++..   ..++++.++++|++.|++.+...+...+
T Consensus        47 ~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~  126 (1146)
T PRK08633         47 ILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYG  126 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHh
Confidence            4568888999999999999999999999999999988876665554433   3478899999999999999999999999


Q ss_pred             HHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh
Q psy2964         144 IVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA  181 (208)
Q Consensus       144 ~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~  181 (208)
                      ++.|++|+++|++++++ ...+..+|.++++.+++++.
T Consensus       127 ~i~~~~~~~~r~~~~~~-~~~~~~ig~~lg~~l~~~l~  163 (1146)
T PRK08633        127 IIPELVGKENLSRANGL-LEAFTIVAILAGTALFSFLF  163 (1146)
T ss_pred             hhHHhcCcccchhhhhH-HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999 77788899999999888764

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.61  E-value=2.1e-14  Score=130.23  Aligned_cols=140  Identities=12%  Similarity=0.078  Sum_probs=111.4

Q ss_pred             chHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHH---HHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHH
Q psy2964          67 SNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSH---VVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYI  143 (208)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~  143 (208)
                      ...++..+++.+++.+.++++|+++||+|||+++....   +...+........++++.++++|+++|++.+...+...+
T Consensus        52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a  131 (1140)
T PRK06814         52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS  131 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence            35677888999999999999999999999999754322   222222222233478999999999999999999999999


Q ss_pred             HHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHhccCCC
Q psy2964         144 IVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIVAIFTPES  207 (208)
Q Consensus       144 ~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~pet  207 (208)
                      ++.+++|+++|++++|+ .+.+..+|.+++|.+++++.   +|++.|+...+..++.+++.+.+|++
T Consensus       132 ~l~~~~~~~~~~~a~~~-~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (1140)
T PRK06814        132 ILPDHLNKDELLGANAL-VEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKT  197 (1140)
T ss_pred             hhHhhcCccccchhhHH-HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCC
Confidence            99999999999999999 78899999999999999886   88888855555555555555666654

>TIGR00897 2A0118 polyol permease family

Probab=99.61  E-value=5e-14  Score=114.44  Aligned_cols=132  Identities=13%  Similarity=0.073  Sum_probs=107.0

Q ss_pred             ceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHh---h-hccHHHHHHHHHH
Q psy2964          54 RRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTP---F-SKDVVLFSLSRFL  129 (208)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~l  129 (208)
                      .+.+++++   +..+.++..+.+.++..++.++.|+++||+|||+++..+..+.+++.++..   . .++++.+.+.|++
T Consensus        38 ~~~~~~g~---s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i  114 (402)
T TIGR00897        38 PFLKALGL---SPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGI  114 (402)
T ss_pred             HHHHHhCC---CHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHH
Confidence            34456666   677899999999999999999999999999999999999999888766542   3 2578888899999


Q ss_pred             HhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHH-HHHHHHHHhhh---hhHHHHHH
Q psy2964         130 TGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSE-VALPWIAYYLA---DWQWISVI  189 (208)
Q Consensus       130 ~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~-~~~~~~~~~~~---~w~~~~~~  189 (208)
                      .|++.+...+....++.+.+|+++|++++|+ .+....+|. .++|.+++.+.   +|+..++.
T Consensus       115 ~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~  177 (402)
T TIGR00897       115 RGLGYPLFAYSFLVWVVYNTKQDNLSSAVGW-FWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWS  177 (402)
T ss_pred             HHcchHHHHhHHHHHHHHhCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence            9999888777778888999999999999999 666777886 57888876543   65544443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PTZ00207 hypothetical protein; Provisional

Probab=99.59  E-value=1e-13  Score=116.37  Aligned_cols=147  Identities=16%  Similarity=0.100  Sum_probs=114.8

Q ss_pred             ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh------ccHHHHHH
Q psy2964          52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS------KDVVLFSL  125 (208)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~------~~~~~~~~  125 (208)
                      .+.+.+++++   +..+.+++.++. .....++++.|++.||+|||+++.++.++..++.++++++      ++++.+.+
T Consensus        50 s~~L~~~lgl---s~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l  125 (591)
T PTZ00207         50 SGAMQARYNL---TQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSV  125 (591)
T ss_pred             HHHHHHHhCc---CHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence            4566777777   566677766653 3445677789999999999999999999999999998887      68999999


Q ss_pred             HHHHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHH-HHHHHHhhh-hhHHHHHHHHHHHHH-HHHHHh
Q psy2964         126 SRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVA-LPWIAYYLA-DWQWISVITIFPLIV-GLIVAI  202 (208)
Q Consensus       126 ~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~-~~~~~~~~~-~w~~~~~~~~~~~~~-~~~~~~  202 (208)
                      .|++.|++.+...+.....+.+++| ++|++++|+ ...+.++|..+ +++...++. +|+..+++.++..++ +++.+.
T Consensus       126 ~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi-~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~  203 (591)
T PTZ00207        126 YNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAI-MKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIV  203 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999888888899999996 789999999 66688888864 555555554 788877777666555 444444


Q ss_pred             cc
Q psy2964         203 FT  204 (208)
Q Consensus       203 ~~  204 (208)
                      ++
T Consensus       204 ~v  205 (591)
T PTZ00207        204 FM  205 (591)
T ss_pred             he
Confidence            33

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.58  E-value=6.1e-14  Score=117.29  Aligned_cols=132  Identities=23%  Similarity=0.323  Sum_probs=110.2

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYII  144 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  144 (208)
                      ......|+.+...++..+..++.|+++|.+|||..++.+.++..++.+..+.++|...++.+..+.|++.|... .....
T Consensus        76 ~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~-~~~~~  154 (599)
T PF06609_consen   76 GSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQE-LAALA  154 (599)
T ss_pred             CCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHH-HHHHH
Confidence            56678889999999999999999999999999999999999999999999999999999999999999987775 55667


Q ss_pred             HHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHH
Q psy2964         145 VLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGL  198 (208)
Q Consensus       145 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~  198 (208)
                      ++|..|.|.|..+.++ ...........+|.++..+.   +|||.|++.++...+.+
T Consensus       155 isEl~p~k~R~~~~~~-~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~  210 (599)
T PF06609_consen  155 ISELVPNKWRGLGLAI-ASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIAL  210 (599)
T ss_pred             HHHhcccchhhhHhHH-HHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHH
Confidence            8999999999887766 44444444445666665543   89999998877655533

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.58  E-value=2.4e-13  Score=113.18  Aligned_cols=142  Identities=17%  Similarity=0.111  Sum_probs=104.3

Q ss_pred             CchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHH---HhhhccHHHHHHHHHHHhhhhhhHHHHHH
Q psy2964          66 SSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVAL---TPFSKDVVLFSLSRFLTGVGHFNAFIFYY  142 (208)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  142 (208)
                      .....+......++..++.++.|+++||+|||+++..+.+...+....   ....++...+.+++++.|++.+.......
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~  364 (490)
T PRK10642        285 EDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMA  364 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334556667778889999999999999999999988877654433322   22234566777888888887777777788


Q ss_pred             HHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHhccCCCC
Q psy2964         143 IIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA----DWQWISVITIFPLIVGLIVAIFTPESA  208 (208)
Q Consensus       143 ~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~~petp  208 (208)
                      .++.|.+|++.|++++++.++.+.. ++.++|.+.+++.    +|+.++++..++.++.++..+++||||
T Consensus       365 ~~~~~~~p~~~Rg~~~g~~~~~~~~-~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~  433 (490)
T PRK10642        365 STLPAMFPTHIRYSALAAAFNISVL-VAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETA  433 (490)
T ss_pred             HHHHHHCCCccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcccc
Confidence            8999999999999999986676554 4566776666543    466666666666666666666789987

>TIGR00901 2A0125 AmpG-related permease

Probab=99.54  E-value=3.6e-13  Score=107.48  Aligned_cols=150  Identities=20%  Similarity=0.196  Sum_probs=112.7

Q ss_pred             ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhh-----CchHHH-HHHHHHHHHHHHHHhhh---ccHHH
Q psy2964          52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRY-----GRITAV-LGSHVVSFLGVALTPFS---KDVVL  122 (208)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----Grr~~l-~~~~~~~~~~~~~~~~~---~~~~~  122 (208)
                      .+.+.+++++   +..+.++...+ .+...+ .+++|+++||+     |||+.+ +.+.+..++...+.++.   .+.+.
T Consensus        11 ~~~~~~~~g~---s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~   85 (356)
T TIGR00901        11 LPYWLRSKNV---SLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPL   85 (356)
T ss_pred             HHHHHHHcCC---CHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHH
Confidence            3456667777   56677777544 444444 89999999998     899974 56666666666666665   45556


Q ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---h--------hHHHHHHHH
Q psy2964         123 FSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---D--------WQWISVITI  191 (208)
Q Consensus       123 ~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~--------w~~~~~~~~  191 (208)
                      +....++.+++.+...+...+++.|.+|+|+|+++.++ ...+..+|..+++.+++.+.   +        ||..|++.+
T Consensus        86 l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~a  164 (356)
T TIGR00901        86 LAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTI-YIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTA  164 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHH-HHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHH
Confidence            66677788888888889999999999999999999998 67788899999988887664   5        999999888


Q ss_pred             HHHHHHHHHHh-ccCCC
Q psy2964         192 FPLIVGLIVAI-FTPES  207 (208)
Q Consensus       192 ~~~~~~~~~~~-~~pet  207 (208)
                      +..++..+..+ ..||.
T Consensus       165 i~~l~~~~~~~~~~~e~  181 (356)
T TIGR00901       165 LLILPGLLVTLFLAKEP  181 (356)
T ss_pred             HHHHHHHHHHHHhccCC
Confidence            77666554433 35653

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.53  E-value=7.7e-13  Score=107.18  Aligned_cols=141  Identities=10%  Similarity=-0.050  Sum_probs=110.8

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYII  144 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  144 (208)
                      +..+.++..++..++..++.++.|+++||+|||+.+..+.....+........++.+..++.+++.+++.+...+....+
T Consensus       250 ~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~  329 (393)
T PRK15011        250 PEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGMLY  329 (393)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566777777777788899999999999999998887766665555445556777777788888888777777777788


Q ss_pred             HHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHhccCCC
Q psy2964         145 VLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIVAIFTPES  207 (208)
Q Consensus       145 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~pet  207 (208)
                      ..|..|+ +|++++++ ++....+|..++|.+++.+.   +|+..+.+..++.++.++..+..||+
T Consensus       330 ~~~~~p~-~~g~~~~~-~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  393 (393)
T PRK15011        330 FQDLMPG-QAGSATTL-YTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIKDV  393 (393)
T ss_pred             HHHhCCC-CcchHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            8999985 58999998 55567889999999988875   78888888877777777777777764

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.53  E-value=7.5e-13  Score=107.51  Aligned_cols=150  Identities=15%  Similarity=0.163  Sum_probs=116.2

Q ss_pred             ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhh-----CchH-HHHHHHHHHHHHHHHHhhh---ccHHH
Q psy2964          52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRY-----GRIT-AVLGSHVVSFLGVALTPFS---KDVVL  122 (208)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----Grr~-~l~~~~~~~~~~~~~~~~~---~~~~~  122 (208)
                      .+.+..+.++   +..+++++..+...  .+.++++|+++||+     |||+ .+..+.++.+++..+..+.   ++++.
T Consensus        22 ~~~~l~~~g~---~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~   96 (402)
T PRK11902         22 LQAWMTVEGL---DIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWP   96 (402)
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHH
Confidence            3455556676   67788888666554  68999999999999     8875 6888788887777776665   35677


Q ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHH
Q psy2964         123 FSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA----DWQWISVITIFPLIVGL  198 (208)
Q Consensus       123 ~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~~~~~~  198 (208)
                      +.+..++.+++.+...+...+++.|..|+++|+++.++ ...+..+|..+++.++..+.    +||..|++.++..++..
T Consensus        97 l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~-~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~  175 (402)
T PRK11902         97 LAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAV-KVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGA  175 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHH-HHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHH
Confidence            77777778888888889999999999999999999999 66778888888877666653    79999998877766655


Q ss_pred             HHHhccCCC
Q psy2964         199 IVAIFTPES  207 (208)
Q Consensus       199 ~~~~~~pet  207 (208)
                      +..++.||+
T Consensus       176 l~~~~~~e~  184 (402)
T PRK11902        176 LTTLWAPEP  184 (402)
T ss_pred             HHHHhcCCC
Confidence            555566664

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.52  E-value=1.2e-12  Score=105.96  Aligned_cols=148  Identities=16%  Similarity=0.184  Sum_probs=103.4

Q ss_pred             eeecccccccCCchHHHHHHHHHH-HHHhHHHHHHHhhhhhCchHHHH-HHHHHHHHHHHHHhhhccHHHHHHHHHHHhh
Q psy2964          55 RRRRDNWVCDGSSNLAITRSIFFL-GSLLGGFILSWVADRYGRITAVL-GSHVVSFLGVALTPFSKDVVLFSLSRFLTGV  132 (208)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~Grr~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~  132 (208)
                      +.+++++   +..+.++..+...+ +..++.+.+++ +||+|||+.++ .+.+...+...+.+++++++.+++.+.+.+.
T Consensus        42 l~~~~~~---s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  117 (393)
T PRK15011         42 LTDEVHA---RPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSS  117 (393)
T ss_pred             HHhhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            3456676   56778888766555 55566655666 99999998754 5555555666677788888887666655554


Q ss_pred             hhhhHHHHHHHHHHhhcCCchhh--hHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHH-HHHHHhccCC
Q psy2964         133 GHFNAFIFYYIIVLECVGPKWRT--FAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIV-GLIVAIFTPE  206 (208)
Q Consensus       133 ~~~~~~~~~~~~~~e~~~~~~r~--~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~-~~~~~~~~pe  206 (208)
                      ..+...+....++.+..+++.|.  ...++ ...+..+|..++|.+++.+.   |||..|++.++..++ ..+.++++||
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~  196 (393)
T PRK15011        118 FGSTANPQMFALAREHADKTGREAVMFSSF-LRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPS  196 (393)
T ss_pred             HHHhhHHHHHHHHHHHhhhccchHHHHHHH-HHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCc
Confidence            44566788888888887766553  23345 55677889999999998875   999999888776655 4445556776


Q ss_pred             C
Q psy2964         207 S  207 (208)
Q Consensus       207 t  207 (208)
                      .
T Consensus       197 ~  197 (393)
T PRK15011        197 M  197 (393)
T ss_pred             c
Confidence            5

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.51  E-value=1.9e-12  Score=107.81  Aligned_cols=125  Identities=18%  Similarity=0.266  Sum_probs=102.3

Q ss_pred             hHHHHHHHhhhhh-----CchHH-HHHHHHHHHHHHHHHhhh---ccHHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCc
Q psy2964          82 LGGFILSWVADRY-----GRITA-VLGSHVVSFLGVALTPFS---KDVVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPK  152 (208)
Q Consensus        82 ~~~~~~g~l~dr~-----Grr~~-l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~  152 (208)
                      ++++++|+++||+     |||+. +..+.+..+++..++++.   ++++.+.+.+++.+++.+...+...++..|++|++
T Consensus        60 ~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~  139 (491)
T PRK11010         60 VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAE  139 (491)
T ss_pred             HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence            6899999999999     99986 557776666666666664   46778888999999999999899999999999999


Q ss_pred             hhhhHHhHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHhccCCC
Q psy2964         153 WRTFAMTFPFLIFYTVSEVALPWIAYYLA----DWQWISVITIFPLIVGLIVAIFTPES  207 (208)
Q Consensus       153 ~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~~pet  207 (208)
                      +|+++.++ ...++.+|..+++.+...+.    |||..|++.++..++..+..++.||+
T Consensus       140 ~rg~~~~i-~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~  197 (491)
T PRK11010        140 ERGAGAAI-SVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLAPEP  197 (491)
T ss_pred             hhHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            99999999 67788889888887776653    79999999887766665555557775

>TIGR00889 2A0110 nucleoside transporter

Probab=99.51  E-value=1.9e-12  Score=105.80  Aligned_cols=141  Identities=18%  Similarity=0.118  Sum_probs=113.3

Q ss_pred             chHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhc----cHHHHHHHHHHHhhhhhhHHHHHH
Q psy2964          67 SNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSK----DVVLFSLSRFLTGVGHFNAFIFYY  142 (208)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~g~~~~~~~~~~~  142 (208)
                      ...+...++..++..++.++.|+++||+|||+++..+.++..++..+.....    +.+.+++.+++.|++.+...+...
T Consensus       251 ~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~  330 (418)
T TIGR00889       251 KNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGS  330 (418)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567888888889999999999999999999999999999888766665532    235566788999999888888889


Q ss_pred             HHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---------hhHHHHHHHHHHHHH-HHHHHhccCCC
Q psy2964         143 IIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---------DWQWISVITIFPLIV-GLIVAIFTPES  207 (208)
Q Consensus       143 ~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---------~w~~~~~~~~~~~~~-~~~~~~~~pet  207 (208)
                      .++.|.+|++.|++++|+.....+.+|..++|.+++.+.         +|+..|.+.+++.++ +.+.++++||+
T Consensus       331 ~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       331 VFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS  405 (418)
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            999999999999999999433567889999999998764         378888877766555 45556666764

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG0253|consensus

Probab=99.50  E-value=1.9e-13  Score=106.69  Aligned_cols=141  Identities=19%  Similarity=0.264  Sum_probs=125.5

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYII  144 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  144 (208)
                      +..+.+++......++.+++..+|.++|++|||+.+.+..++.++...+.+.++|+..+.+.|.+.|+|.|+ .|...++
T Consensus       111 s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~  189 (528)
T KOG0253|consen  111 SEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAI  189 (528)
T ss_pred             hhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHH
Confidence            456677888889999999999999999999999999999999999999999999999999999999999999 6888999


Q ss_pred             HHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHhccCCCC
Q psy2964         145 VLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIVAIFTPESA  208 (208)
Q Consensus       145 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~petp  208 (208)
                      -.|..|...|...+=. . ..|.+|.+....++....   ||||.......+..+.....+++||||
T Consensus       190 yle~lp~~~r~~~~V~-~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESp  254 (528)
T KOG0253|consen  190 YLEFLPSSHRWLLTVM-S-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESP  254 (528)
T ss_pred             HHHhccCcCCCcchhH-H-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCc
Confidence            9999999999987633 4 688899988888877765   999988888888777888889999997

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.50  E-value=2.4e-12  Score=104.33  Aligned_cols=135  Identities=19%  Similarity=0.219  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q psy2964          69 LAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIVLEC  148 (208)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~  148 (208)
                      .++..+.+.++..++.++.|++.||+|||+.+..+..+..++..+....++.+.+.+..++.|++.+...+.......|.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~  330 (399)
T PRK05122        251 AALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKR  330 (399)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence            45556778888899999999999999999999998888888877777778888888889999999988888888888899


Q ss_pred             cCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHhcc
Q psy2964         149 VGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIVAIFT  204 (208)
Q Consensus       149 ~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~  204 (208)
                      .|+++|+++.++ ++....+|..++|.+.+.+.   +|++.+++.++..+++++....+
T Consensus       331 ~~~~~~g~~~g~-~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  388 (399)
T PRK05122        331 VPPQNRGAALGA-YSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLL  388 (399)
T ss_pred             CCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999 67677788888777777664   78888888777766655544433

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.50  E-value=7e-13  Score=109.53  Aligned_cols=137  Identities=15%  Similarity=0.110  Sum_probs=104.5

Q ss_pred             cccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhh-CchHHHHHHHHHHHHHHHHHhhhc-cHHHHHHHHHHHhhhhh
Q psy2964          58 RDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRY-GRITAVLGSHVVSFLGVALTPFSK-DVVLFSLSRFLTGVGHF  135 (208)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~  135 (208)
                      ++++   +..+.+.+.+.+.....++++++|+++||+ |||++++++.++..++.++.+..+ +...+.+...+.+++.|
T Consensus        39 ~lgl---s~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G  115 (493)
T PRK15462         39 QLKY---DDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYG  115 (493)
T ss_pred             hcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc
Confidence            3565   566788888999999999999999999999 999999999999999887665533 22323333344445556


Q ss_pred             hHHHHHHHHHHhhcCCc--hhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHH
Q psy2964         136 NAFIFYYIIVLECVGPK--WRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGL  198 (208)
Q Consensus       136 ~~~~~~~~~~~e~~~~~--~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~  198 (208)
                      ...+...++++|.+|++  +|..+.++.+. ...+|..++|.+.+++.   +|++.|.+.++..++++
T Consensus       116 ~~~~~~~alv~elfp~~~~~R~sgf~i~Y~-~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~l  182 (493)
T PRK15462        116 LFKSNVSCLLGELYEPTDPRRDGGFSLMYA-AGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGL  182 (493)
T ss_pred             cccccHHHHHHHHCCCCCccccceehHHHH-HHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHH
Confidence            65577788999999876  78889999555 56689999999999885   89999988665444433

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.49  E-value=9e-13  Score=109.97  Aligned_cols=136  Identities=15%  Similarity=0.138  Sum_probs=106.2

Q ss_pred             ecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhh-hCchHHHHHHHHHHHHHHHHHhhhc-cHHHHHHHHHHHhhhh
Q psy2964          57 RRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADR-YGRITAVLGSHVVSFLGVALTPFSK-DVVLFSLSRFLTGVGH  134 (208)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~  134 (208)
                      +++++   +....++..+.+........+++|+++|| +|||+.+..+.++..++..++++++ +.+.+.+.+.++|++.
T Consensus        50 ~~lg~---s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~  126 (500)
T PRK09584         50 KQLGM---SEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGN  126 (500)
T ss_pred             HHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhh
Confidence            45665   45556666666665556666789999999 5999999999999999988888764 4566677889999999


Q ss_pred             hhHHHHHHHHHHhhcCCch--hhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHH
Q psy2964         135 FNAFIFYYIIVLECVGPKW--RTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIV  196 (208)
Q Consensus       135 ~~~~~~~~~~~~e~~~~~~--r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~  196 (208)
                      |...+...+++.|++|+++  |..+.++ +..+..+|..++|.+++++.   ||++.|.+.++...+
T Consensus       127 g~~~~~~~~l~~~~f~~~~~~~~~~~~~-~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i  192 (500)
T PRK09584        127 GLFKANPSSLLSTCYEKDDPRLDGAFTM-YYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLI  192 (500)
T ss_pred             hcccCCHHHHHHHhcCCCchhhhhcchH-HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence            9888888899999998653  4456666 56688899999999998885   899999887654333

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.48  E-value=2e-12  Score=102.07  Aligned_cols=139  Identities=22%  Similarity=0.299  Sum_probs=123.7

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchH-HHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRIT-AVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYI  143 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~  143 (208)
                      ++.+.++......++..++.++.+++.||+|||+ .+..+..+..++.......++.+...+..++.|++.+...+....
T Consensus       209 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  288 (352)
T cd06174         209 SAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLT  288 (352)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHH
Confidence            5566788889999999999999999999999999 999999999999998888888888889999999999999999999


Q ss_pred             HHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHhcc
Q psy2964         144 IVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIVAIFT  204 (208)
Q Consensus       144 ~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~  204 (208)
                      ++.|..|+++|++.+++ .+....+|..++|.+.+.+.   +|++.+++.+++.++..+..+++
T Consensus       289 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~~~  351 (352)
T cd06174         289 LASELAPPEARGTASGL-FNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLL  351 (352)
T ss_pred             HHHhhcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHheec
Confidence            99999999999999999 77788899999999988875   88899998888877766555443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.47  E-value=2.7e-12  Score=104.15  Aligned_cols=135  Identities=16%  Similarity=0.110  Sum_probs=108.0

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYII  144 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  144 (208)
                      +....+...+.+.++..++.++.|+++||+|||+.+..+.+...++.......++.+.+.+..++.|++.+...+...++
T Consensus       253 s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  332 (406)
T PRK11551        253 SRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYAL  332 (406)
T ss_pred             ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            45667888889999999999999999999999999988777777776666667777777777788888877777888999


Q ss_pred             HHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHH
Q psy2964         145 VLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA----DWQWISVITIFPLIVGLIV  200 (208)
Q Consensus       145 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~  200 (208)
                      ..|.+|+++|++++|+ ......+|..++|.+.+.+.    +|...++......+.+.+.
T Consensus       333 ~~~~~p~~~~g~~~g~-~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~  391 (406)
T PRK11551        333 APLFYPTQVRGTGVGA-AVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALA  391 (406)
T ss_pred             HHHHcchhhhhhhhhH-HHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHH
Confidence            9999999999999999 56678899999999988875    4445555554444443333

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.47  E-value=4.4e-13  Score=106.13  Aligned_cols=150  Identities=11%  Similarity=0.074  Sum_probs=119.3

Q ss_pred             cceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhc---cHHHHHHHHHH
Q psy2964          53 RRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSK---DVVLFSLSRFL  129 (208)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l  129 (208)
                      ..+.+++++   ++.+.+++.++..+...+..++.|.+.||+|.|+...++.++..+-++..+++.   +++.+++++++
T Consensus        38 ~~i~~~~~L---S~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll  114 (417)
T COG2223          38 VFIKSDFGL---SEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLL  114 (417)
T ss_pred             hhhccccCC---CHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHH
Confidence            445588888   889999999999999999999999999999999999999999999888888764   45699999999


Q ss_pred             HhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---h---hHHHHHHHHHHHHH-HHHHHh
Q psy2964         130 TGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---D---WQWISVITIFPLIV-GLIVAI  202 (208)
Q Consensus       130 ~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~---w~~~~~~~~~~~~~-~~~~~~  202 (208)
                      .|++. ..++....++++++|+++++.++|+ .. ..++|..+..+++..+.   +   |+....+......+ .+..++
T Consensus       115 ~G~~G-asFav~m~~~s~~fP~~~qG~AlGI-~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~  191 (417)
T COG2223         115 LGLAG-ASFAVGMPNASFFFPKEKQGLALGI-AG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWL  191 (417)
T ss_pred             Hhccc-ceehcccccccccCChhhhhHHHHH-hc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99984 4568899999999999999999999 56 55566555444444332   4   88877766555544 555566


Q ss_pred             ccCCCC
Q psy2964         203 FTPESA  208 (208)
Q Consensus       203 ~~petp  208 (208)
                      .+.|.|
T Consensus       192 ~~~d~p  197 (417)
T COG2223         192 GMNDVP  197 (417)
T ss_pred             HhCCCh
Confidence            555543

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.47  E-value=2.8e-12  Score=104.71  Aligned_cols=139  Identities=13%  Similarity=0.044  Sum_probs=114.0

Q ss_pred             chHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q psy2964          67 SNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIVL  146 (208)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~  146 (208)
                      ...+.+.++..++..++.+++|+++||+|||+.+..+.++.++...+.++.++.+.+...+++.|++.+...+....++.
T Consensus       262 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~  341 (420)
T PRK09528        262 RVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYIT  341 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678888888889999999999999999999999999988888888888889988888899999988887788889999


Q ss_pred             hhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHH-HHHhccC
Q psy2964         147 ECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGL-IVAIFTP  205 (208)
Q Consensus       147 e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~-~~~~~~p  205 (208)
                      |.+|++.|+...+..++....+|..++|.+.+++.   ||+..|.+.+++.++.. +.++.++
T Consensus       342 ~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~  404 (420)
T PRK09528        342 LNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLS  404 (420)
T ss_pred             HHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999887655345667789999988888875   89999988776665533 3333443

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.46  E-value=5.8e-12  Score=100.94  Aligned_cols=140  Identities=10%  Similarity=0.004  Sum_probs=110.0

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYII  144 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  144 (208)
                      +..+.++..........++.++.|++.||+|||+.+..+.+...+........++.+.+...+.+.|++.+...+....+
T Consensus       233 ~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~  312 (375)
T TIGR00899       233 PDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLY  312 (375)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556676666666777888999999999999999888877666655555566777777788889999888888888899


Q ss_pred             HHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHhccCC
Q psy2964         145 VLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIVAIFTPE  206 (208)
Q Consensus       145 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~pe  206 (208)
                      +.|..|++ |++++++ ++....+|..++|.+.+.+.   +|+..+++.++..+++.+....++|
T Consensus       313 ~~~~~~~~-~~~~~~~-~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  375 (375)
T TIGR00899       313 FQDLMPGR-AGAATTL-YTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLIKD  375 (375)
T ss_pred             HHHhCcch-hhHHHHH-HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHheecC
Confidence            99998764 5688888 56667789999999988765   7888888888877776666666654

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK12382 putative transporter; Provisional

Probab=99.45  E-value=7.2e-12  Score=101.34  Aligned_cols=131  Identities=21%  Similarity=0.229  Sum_probs=111.3

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q psy2964          69 LAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIVLEC  148 (208)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~  148 (208)
                      .++....+.++..+++++.|++.||+|||+.+..+..+..++..+....++.+...+..++.|++.+...+.......|.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  330 (392)
T PRK12382        251 AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKR  330 (392)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence            45556677788889999999999999999999999988888887777778888788888999999888888888889999


Q ss_pred             cCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHH
Q psy2964         149 VGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIV  200 (208)
Q Consensus       149 ~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~  200 (208)
                      +|+++|+++.++ ++....+|..++|.+.+.+.   +|++.+.+.+++.++..+.
T Consensus       331 ~~~~~~g~~~g~-~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  384 (392)
T PRK12382        331 VPSQVRGTALGG-YAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIV  384 (392)
T ss_pred             cCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            999999999999 67778889999998888775   8999998887776664443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.45  E-value=1.7e-12  Score=103.65  Aligned_cols=132  Identities=18%  Similarity=0.118  Sum_probs=107.4

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccH--HHHHHHHHHHhhhhhhHHHHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDV--VLFSLSRFLTGVGHFNAFIFYY  142 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~g~~~~~~~~~~~  142 (208)
                      +....+...+++.++..+++++.|+++||+|||+.+..+..+..++..+....++.  ..+....++.|++.+...+..+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~  317 (377)
T TIGR00890       238 SDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFP  317 (377)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccH
Confidence            44567778888999999999999999999999999999988888887776666532  2344556777877777777778


Q ss_pred             HHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHH
Q psy2964         143 IIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVG  197 (208)
Q Consensus       143 ~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~  197 (208)
                      .++.|.+|+++|+++.|+ ......+|..++|.+.+.+.   +|++.+.+.+++.+++
T Consensus       318 ~~~~~~~~~~~~~~~~g~-~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       318 SLVSDIFGPANSAANYGF-LYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             HHHHHHhhhhhhhhHhHH-HHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            899999999999999999 67788899999999888765   7888888877665554

>PRK09952 shikimate transporter; Provisional

Probab=99.44  E-value=1.3e-11  Score=101.45  Aligned_cols=137  Identities=16%  Similarity=0.197  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhh---h-ccHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q psy2964          71 ITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPF---S-KDVVLFSLSRFLTGVGHFNAFIFYYIIVL  146 (208)
Q Consensus        71 ~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~  146 (208)
                      ....+..+...++.++.|+++||+|||+.+..+.++..++......   . ++.+.+.+..++.+++.+...+..+++++
T Consensus       290 ~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  369 (438)
T PRK09952        290 NIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFT  369 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555666788889999999999999988887766554432222   1 23344445556667777777788899999


Q ss_pred             hhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHHHHHHhccCCC
Q psy2964         147 ECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA-----DWQWISVITIFPLIVGLIVAIFTPES  207 (208)
Q Consensus       147 e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~w~~~~~~~~~~~~~~~~~~~~~pet  207 (208)
                      |.+|++.|+.+.++.+..+..+|+.++|.+.+++.     +|...+.+.++..+++.+..+.++|+
T Consensus       370 e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~  435 (438)
T PRK09952        370 EMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN  435 (438)
T ss_pred             HHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence            99999999999998777667788888998888763     47777777777777766666666765

>TIGR00898 2A0119 cation transport protein

Probab=99.43  E-value=9.2e-12  Score=103.95  Aligned_cols=137  Identities=20%  Similarity=0.161  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccH--HHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q psy2964          71 ITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDV--VLFSLSRFLTGVGHFNAFIFYYIIVLEC  148 (208)
Q Consensus        71 ~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~g~~~~~~~~~~~~~~~e~  148 (208)
                      ....+..+...++.++.+++.||+|||+.+.++.++.+++.++..+.++.  +......++.+++.+..++..+.+.+|.
T Consensus       359 ~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  438 (505)
T TIGR00898       359 LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAEL  438 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            33445566778889999999999999999999999888888777766543  4444555666777777778889999999


Q ss_pred             cCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHhccCCCC
Q psy2964         149 VGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA-DWQWISVITIFPLIVGLIVAIFTPESA  208 (208)
Q Consensus       149 ~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~-~w~~~~~~~~~~~~~~~~~~~~~petp  208 (208)
                      +|++.|+.++|+ .+....+|..++|.+.+... ++...+.+.++..+++.+..+++|||.
T Consensus       439 ~p~~~r~~~~g~-~~~~~~ig~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpet~  498 (505)
T TIGR00898       439 YPTVVRNLGVGV-CSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLALLAGILTLFLPETK  498 (505)
T ss_pred             ccHHHHhhhHhH-HHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence            999999999999 56677899999999888332 455667777777666666667788873

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.43  E-value=4e-12  Score=102.61  Aligned_cols=147  Identities=10%  Similarity=-0.025  Sum_probs=106.8

Q ss_pred             ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCch----HHHHHHHHHHHHHHHHHhhhccHHHHHHHH
Q psy2964          52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRI----TAVLGSHVVSFLGVALTPFSKDVVLFSLSR  127 (208)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (208)
                      ++.+.++++.   +..+.++..+++.++..++++++|+++||+|||    +.+.......  ........++++.+++.|
T Consensus        27 l~~~l~~~g~---s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~  101 (382)
T PRK11128         27 WSVWLKGQGY---TPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVAI  101 (382)
T ss_pred             HHHHHHhcCC---CHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHH
Confidence            4456666776   788999999999999999999999999999994    3332222221  222233457899999999


Q ss_pred             HHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHhcc
Q psy2964         128 FLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIVAIFT  204 (208)
Q Consensus       128 ~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~  204 (208)
                      ++.|++.+...+...++..++  .++|+++.+. ......+|..++|.+++++.   +||..|++.++..++..+..+..
T Consensus       102 ~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~-~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~~~  178 (382)
T PRK11128        102 GLFNLFFSPLVPLTDALANTW--QKQIGLDYGK-VRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQLLR  178 (382)
T ss_pred             HHHHHHHcccccHHHHHHHHH--HhhccCCcch-HHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHcc
Confidence            999998888888877777776  3456776666 45566789999999999875   89998887766554444444444


Q ss_pred             CC
Q psy2964         205 PE  206 (208)
Q Consensus       205 pe  206 (208)
                      ||
T Consensus       179 ~~  180 (382)
T PRK11128        179 PT  180 (382)
T ss_pred             CC
Confidence            54

>KOG0569|consensus

Probab=99.43  E-value=7.8e-12  Score=102.40  Aligned_cols=143  Identities=13%  Similarity=0.098  Sum_probs=97.1

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh---c-cH--H---HHHHHH--HHHhhh
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS---K-DV--V---LFSLSR--FLTGVG  133 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~-~~--~---~~~~~~--~l~g~~  133 (208)
                      +.....+.+....+...+..+++..+.||+|||+.++.+..++.+..+++...   . ..  |   ..+++.  +...++
T Consensus       303 ~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~  382 (485)
T KOG0569|consen  303 TPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFA  382 (485)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Confidence            44556777888888899999999999999999999999999999988776553   1 11  1   112333  333344


Q ss_pred             hhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHH-HHHHHhccCCCC
Q psy2964         134 HFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLADWQ-WISVITIFPLIV-GLIVAIFTPESA  208 (208)
Q Consensus       134 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~w~-~~~~~~~~~~~~-~~~~~~~~petp  208 (208)
                      .|. .|+.+-+.+|++|.+.|+.+++......+.....++-.....-..+. +.|+...++..+ .++.++.+|||.
T Consensus       383 ~G~-gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~filF~i~~~~~~i~~~~~lPETk  458 (485)
T KOG0569|consen  383 IGP-GPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVFILFVIPLAIFLIYLYRYLPETK  458 (485)
T ss_pred             cCC-CchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhCcccC
Confidence            444 48889999999999999999988655444433333322222211121 556666666555 666788899984

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.41  E-value=9.6e-12  Score=100.87  Aligned_cols=130  Identities=14%  Similarity=0.166  Sum_probs=109.8

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q psy2964          69 LAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIVLEC  148 (208)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~  148 (208)
                      .+...++..++..++.+..|+++||+|||+.+..+.....++.+.....++.+.+.+.+++.|++.+...+...+.+.+.
T Consensus       260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  339 (408)
T PRK09874        260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN  339 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence            34555666778888999999999999999999999888887777777777888888889999999999889999999999


Q ss_pred             cCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHH
Q psy2964         149 VGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLI  199 (208)
Q Consensus       149 ~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~  199 (208)
                      .|++.|++.+++ +.....+|..++|.+++.+.   +|++.|++.++..++..+
T Consensus       340 ~~~~~~g~~~~~-~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~  392 (408)
T PRK09874        340 SSNQIAGRIFSY-NQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAV  392 (408)
T ss_pred             CCcccceeeehH-HHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Confidence            999999999998 67778899999999998875   788999888777666444

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.39  E-value=1.1e-11  Score=100.52  Aligned_cols=144  Identities=15%  Similarity=-0.005  Sum_probs=99.7

Q ss_pred             ecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHH---hhhc-----cHHHHHHHHH
Q psy2964          57 RRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALT---PFSK-----DVVLFSLSRF  128 (208)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~~-----~~~~~~~~~~  128 (208)
                      +++++   +..+.++..+++.++..+++++.|+++||+|||+.++.+....++.....   ...+     ......+.++
T Consensus        31 ~~~g~---s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (396)
T TIGR00882        31 DVNGL---SKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGL  107 (396)
T ss_pred             HhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            34565   67789999999999999999999999999999999988776665543322   1111     2233455677


Q ss_pred             HHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHH-HHhccC
Q psy2964         129 LTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA--DWQWISVITIFPLIVGLI-VAIFTP  205 (208)
Q Consensus       129 l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~--~w~~~~~~~~~~~~~~~~-~~~~~p  205 (208)
                      +.|++.+...+....+..+..++  ++...+. ......+|..++|.+++.+.  +|++.|++.++..++..+ .+...|
T Consensus       108 ~~g~~~~~~~~~~~~~~~~~~~~--~~~~~g~-~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~  184 (396)
T TIGR00882       108 YLGFVFSAGAGAIEAYIEKVSRN--SNFEYGK-ARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFALILMLLLMFAKP  184 (396)
T ss_pred             HHHHHhccchhhHHHHHHHhhhh--cccccch-hhhhcccHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHhCC
Confidence            88887777777777777775433  3334444 33455678888888888765  899999888776666443 333345


Q ss_pred             C
Q psy2964         206 E  206 (208)
Q Consensus       206 e  206 (208)
                      |
T Consensus       185 ~  185 (396)
T TIGR00882       185 K  185 (396)
T ss_pred             C
Confidence            4

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.38  E-value=2.9e-11  Score=98.69  Aligned_cols=142  Identities=17%  Similarity=0.130  Sum_probs=113.1

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYII  144 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  144 (208)
                      +....++..+...++..++.++.+++.||.++++.+..+.++..++.++..+.++.+...++.++.|++.+...+...++
T Consensus       257 ~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  336 (417)
T PRK10489        257 GAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTL  336 (417)
T ss_pred             ChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678888889999999999999999999888888888888888877777777887777788888898888777778889


Q ss_pred             HHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHH-HHHHHhccCCC
Q psy2964         145 VLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIV-GLIVAIFTPES  207 (208)
Q Consensus       145 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~-~~~~~~~~pet  207 (208)
                      +.|..|++.|++++|+ +.....+|..++|.+.+.+.   +++..++..++..++ +.+.+...|++
T Consensus       337 ~~~~~p~~~~g~~~g~-~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (417)
T PRK10489        337 LQTQTPDEMLGRINGL-WTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGEL  402 (417)
T ss_pred             HHhhCCHHHHHHHHHH-HHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccc
Confidence            9999999999999999 56677889999999998886   455556555544333 55555555554

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.37  E-value=1.8e-11  Score=98.79  Aligned_cols=137  Identities=11%  Similarity=-0.048  Sum_probs=103.0

Q ss_pred             cccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHH-HHHHHH-HHHhhhccHHHHHHHHH
Q psy2964          51 RRRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHV-VSFLGV-ALTPFSKDVVLFSLSRF  128 (208)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~  128 (208)
                      .++.+.+++++   +..+.++..+++.+...++++++|+++||+|||........ ...+.. .....+++++.+++.|.
T Consensus        26 ~l~~~l~~~g~---s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~  102 (382)
T TIGR00902        26 FFPAWLKGIGL---GEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSAGAHNAWLLFIAIG  102 (382)
T ss_pred             HHHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            34566667776   78899999999999999999999999999998544322221 111111 23345688999999999


Q ss_pred             HHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHH
Q psy2964         129 LTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFP  193 (208)
Q Consensus       129 l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~  193 (208)
                      +++.+.+...+...++..+.  .++|++.++. ......+|..++|.+++.+.   |||..|++..+.
T Consensus       103 l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~-~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~  167 (382)
T TIGR00902       103 LFALFFSAGMPIGDALANTW--QKQFGLDYGK-VRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAG  167 (382)
T ss_pred             HHHHHHccchhHHHHHHHHH--HHHcCCCccH-HHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence            99988877778888887664  4678888888 56677799999999888775   899988776544

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.37  E-value=5.1e-11  Score=96.19  Aligned_cols=149  Identities=7%  Similarity=-0.143  Sum_probs=121.6

Q ss_pred             cceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhh
Q psy2964          53 RRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGV  132 (208)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~  132 (208)
                      +.+.++.+.   +....+...++..++.+++.++.+++.||+|+|+.+.++.+...+....+++.++.+.++..+.+.|+
T Consensus       229 ~~~l~~~g~---s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~  305 (382)
T TIGR00902       229 AIYWQAAGI---SASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCG  305 (382)
T ss_pred             HHHHHHCCC---CHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHH
Confidence            334445555   66778888888888999999999999999999999999999999999889999999999999999999


Q ss_pred             hhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHHHHHhccC
Q psy2964         133 GHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLADW--QWISVITIFPLIVGLIVAIFTP  205 (208)
Q Consensus       133 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~w--~~~~~~~~~~~~~~~~~~~~~p  205 (208)
                      ..+...+....++.+. |++.|+++.++......++|..++|.+++.+.++  ...|.+.+++.+++++......
T Consensus       306 ~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  379 (382)
T TIGR00902       306 TFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGAGTFVFMAIIAAAAFFLIPKKL  379 (382)
T ss_pred             HHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999998 9999999999844467789999999999998622  1345556666666555544443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.35  E-value=5.7e-11  Score=99.27  Aligned_cols=137  Identities=18%  Similarity=0.153  Sum_probs=114.3

Q ss_pred             cCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh-----ccHHHHHHHHHHHhhhhhhHH
Q psy2964          64 DGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS-----KDVVLFSLSRFLTGVGHFNAF  138 (208)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~~~~~~~  138 (208)
                      ++....+++.....+..++.++++|.++||+.||++++.+-++.++......+.     .+.+.+++..++.|.+.+...
T Consensus        42 ~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~  121 (524)
T PF05977_consen   42 GSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFN  121 (524)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHH
Confidence            356678888888999999999999999999999999999988877655443332     477888899999999999999


Q ss_pred             HHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHH
Q psy2964         139 IFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIVA  201 (208)
Q Consensus       139 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~  201 (208)
                      |..++++.|+.|+++...++++ .+....++..+||.+++.+.   |-.+.|.+.++..++.++..
T Consensus       122 PA~~A~ip~lV~~~~L~~A~al-~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l  186 (524)
T PF05977_consen  122 PAWQAIIPELVPKEDLPAANAL-NSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILAL  186 (524)
T ss_pred             HHHHHHHHHhccHhhHHHHHHH-HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998 78888999999999999875   56677777766655544333

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.35  E-value=1.7e-11  Score=100.83  Aligned_cols=143  Identities=13%  Similarity=0.081  Sum_probs=101.9

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh-----c------cHHHHHHHHHHHhhh
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS-----K------DVVLFSLSRFLTGVG  133 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~------~~~~~~~~~~l~g~~  133 (208)
                      +....++......++..++.++.|+++||+|||+.+..+.++.+++..+.+..     +      +...+....+..+..
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (481)
T TIGR00879       317 STDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFF  396 (481)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHH
Confidence            34556777788888999999999999999999999999888877776665521     1      222222222222222


Q ss_pred             hhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHH-HHhccCCCC
Q psy2964         134 HFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLI-VAIFTPESA  208 (208)
Q Consensus       134 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~-~~~~~petp  208 (208)
                      .....+....++.|.+|++.|++++++ ......+|..++|.+.+.+.   +|++.|++.+++.++..+ ..++.||++
T Consensus       397 ~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~  474 (481)
T TIGR00879       397 AMGWGPVPWVIVSEIFPLSLRPKGISI-AVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETK  474 (481)
T ss_pred             HccccCeehhhhhccCChHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCC
Confidence            222336667788999999999999999 66788889999988877764   688888887777666444 445567653

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.33  E-value=6.1e-11  Score=93.76  Aligned_cols=128  Identities=15%  Similarity=0.087  Sum_probs=115.2

Q ss_pred             hhcccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHh---hhccHHHHHH
Q psy2964          49 DRRRRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTP---FSKDVVLFSL  125 (208)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~~~~~~~~~  125 (208)
                      +...+.+.+.|++   +..+.+.++..++.++.+.+++.+++.+|+|+|.-++.++.++++++.+..   ..+++..++.
T Consensus        33 diLip~l~~~f~l---s~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~  109 (422)
T COG0738          33 DILIPHLKEVFDL---TYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLV  109 (422)
T ss_pred             hhhHHHHHHHhCc---cHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence            3345667777887   788899999999999999999999999999999999999999999998874   5578888889


Q ss_pred             HHHHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhh
Q psy2964         126 SRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL  180 (208)
Q Consensus       126 ~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~  180 (208)
                      .-++.|.|.+......+.+++.+.+++.-+..+++ .+....+|..++|.++..+
T Consensus       110 ~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl-~q~fn~lGa~~gp~~g~~l  163 (422)
T COG0738         110 ALFILASGIGLLETAANPYVTLLGKPESAAFRLNL-AQAFNGLGAILGPLLGSSL  163 (422)
T ss_pred             HHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHH-HHHhhhhHHHHHHHHHHHH
Confidence            99999999999999999999999999888889988 6789999999999998765

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.33  E-value=1.1e-10  Score=94.24  Aligned_cols=136  Identities=16%  Similarity=0.202  Sum_probs=104.4

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYII  144 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  144 (208)
                      +....++..+...++..+++++.|++.||+|+|+++..+.....++.....  + ........++.|++.....|....+
T Consensus       233 s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~~~~~~p~~~~~  309 (381)
T PRK03633        233 SDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAAGFTLYPVAMAW  309 (381)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            455677888888899999999999999999999999888877777654433  2 2233445667777766777888898


Q ss_pred             HHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHhcc
Q psy2964         145 VLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIVAIFT  204 (208)
Q Consensus       145 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~  204 (208)
                      +.|..|+++++...+. +...+.+|..++|.+++++.   +|++.|.+.+.+.++....++..
T Consensus       310 ~~~~~~~~~~~~~~~~-~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~  371 (381)
T PRK03633        310 ACEKVEHHELVAMNQA-LLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLRK  371 (381)
T ss_pred             HHccCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHhc
Confidence            9999988887777666 56678899999999999885   78888888777776655555444

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.33  E-value=4.4e-11  Score=98.62  Aligned_cols=150  Identities=17%  Similarity=0.173  Sum_probs=108.6

Q ss_pred             eeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhh----hhCchHHHHHH-HHHHHHHHHHHhhhccHH--------
Q psy2964          55 RRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVAD----RYGRITAVLGS-HVVSFLGVALTPFSKDVV--------  121 (208)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~Grr~~l~~~-~~~~~~~~~~~~~~~~~~--------  121 (208)
                      +.++.+.   +....+++..+..+...+.+++.|+++|    |+|||+.++++ .....++..+++++++..        
T Consensus        30 yl~~lg~---~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~  106 (477)
T TIGR01301        30 YVQELGI---PHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLD  106 (477)
T ss_pred             HHHHcCC---CHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhcccccc
Confidence            3445565   5677888888999999999999999999    59999998875 555555656666654432        


Q ss_pred             ---------HHHHHHHHHhhhhhhHHHHHHHHHHhhcCCchh--hhHHhHHHHHHHHHHHHHHHHHHHhhh---------
Q psy2964         122 ---------LFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWR--TFAMTFPFLIFYTVSEVALPWIAYYLA---------  181 (208)
Q Consensus       122 ---------~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r--~~~~~~~~~~~~~~g~~~~~~~~~~~~---------  181 (208)
                               ..+++..+..++.....+...++++|..|+++|  +.+.++ .+....+|..+++.+++...         
T Consensus       107 ~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~-~~~~~~lG~ilg~~~g~~~~~~~~~~~~~  185 (477)
T TIGR01301       107 KKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAY-FSFFMAIGNVLGYAAGAYSGLYKIFPFTK  185 (477)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHhccccc
Confidence                     223333444557777778889999999998876  457766 67778889999988887641         


Q ss_pred             ---------hhHHHHHHHHHHHHH-HHHHHhccCCCC
Q psy2964         182 ---------DWQWISVITIFPLIV-GLIVAIFTPESA  208 (208)
Q Consensus       182 ---------~w~~~~~~~~~~~~~-~~~~~~~~petp  208 (208)
                               +.++.|++.++..++ .++..+..+|.|
T Consensus       186 ~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~  222 (477)
T TIGR01301       186 TEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP  222 (477)
T ss_pred             ccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence                     457788887776666 444556678764

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG0253|consensus

Probab=99.32  E-value=2.2e-12  Score=100.79  Aligned_cols=130  Identities=18%  Similarity=0.094  Sum_probs=95.3

Q ss_pred             HHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCchh
Q psy2964          75 IFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWR  154 (208)
Q Consensus        75 ~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r  154 (208)
                      +..++-..|.++.+++.||+|||+.+..++++.+++.++...+.+.....+.-+..-++.++.+.+.++|..|.+|++.|
T Consensus       389 itslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavR  468 (528)
T KOG0253|consen  389 ITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVR  468 (528)
T ss_pred             HHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhh
Confidence            44567788999999999999999999999999999988887776554444444444455566667889999999999999


Q ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHhccC
Q psy2964         155 TFAMTFPFLIFYTVSEVALPWIAYYLA-DWQWISVITIFPLIVGLIVAIFTP  205 (208)
Q Consensus       155 ~~~~~~~~~~~~~~g~~~~~~~~~~~~-~w~~~~~~~~~~~~~~~~~~~~~p  205 (208)
                      +.++|.+ +....+|++++|+++.... +-..+..+.+.+++++.++..++|
T Consensus       469 atgvGtc-SsmaRIggI~~p~iA~~~e~s~sl~i~vy~~~~ilagIavcffP  519 (528)
T KOG0253|consen  469 ATGVGTC-SSMARIGGIFSPVIAMRAELSTSLPIFVYGALFILAGIAVCFFP  519 (528)
T ss_pred             hcchhhh-hhHHhhhhhhhhHHHHHhccceeehHHHHHHHHHHHHHHheeee
Confidence            9999995 5678899999999994443 222233334444444444444444

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.30  E-value=1.4e-10  Score=96.10  Aligned_cols=140  Identities=14%  Similarity=0.147  Sum_probs=95.9

Q ss_pred             ecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHH--HhhhccHHHHHHHHHHHhhhh
Q psy2964          57 RRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVAL--TPFSKDVVLFSLSRFLTGVGH  134 (208)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~g~~~  134 (208)
                      +++++   +..+.++......++..++.+++|+++||+|||+.+........++...  ....++.....+..++.|++.
T Consensus       287 ~~~g~---s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~  363 (467)
T PRK09556        287 QELGF---SKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLV  363 (467)
T ss_pred             HccCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence            34555   4566778888899999999999999999999998876654444333222  223345656667777778654


Q ss_pred             hhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHH-HHHHHHHHHHHhhh---------------hhHHHHHHHHHHHHHHH
Q psy2964         135 FNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYT-VSEVALPWIAYYLA---------------DWQWISVITIFPLIVGL  198 (208)
Q Consensus       135 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~-~g~~~~~~~~~~~~---------------~w~~~~~~~~~~~~~~~  198 (208)
                      ............|.+|++.|+++.|+ .+.... .|..++|.+.+.+.               +|+..|++..+..+++.
T Consensus       364 ~~~~~~~~~~~~~~~p~~~~g~a~gi-~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~  442 (467)
T PRK09556        364 FGPQLLIGVAAVGFVPKKAIGVANGI-KGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCI  442 (467)
T ss_pred             hhHHHHHHHHHHhhcchhhHHHHHHH-HHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHH
Confidence            33333445677799999999999999 444444 46677776666554               38888887766666544


Q ss_pred             HH
Q psy2964         199 IV  200 (208)
Q Consensus       199 ~~  200 (208)
                      +.
T Consensus       443 ~~  444 (467)
T PRK09556        443 CL  444 (467)
T ss_pred             HH
Confidence            43

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.30  E-value=7.9e-11  Score=94.54  Aligned_cols=130  Identities=14%  Similarity=0.024  Sum_probs=98.6

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHH--HHHhh--hccHHHHHHHHHHHhhhhhhHHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGV--ALTPF--SKDVVLFSLSRFLTGVGHFNAFIF  140 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~l~g~~~~~~~~~  140 (208)
                      +....+.......++..++.++.|+++||+|||+.+.....+..+..  .....  .++.+......++.|++.+...+.
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  332 (394)
T TIGR00883       253 SANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGP  332 (394)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhh
Confidence            45567777888889999999999999999999998776554444333  12222  245666667778888888888899


Q ss_pred             HHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---h-hHHHHHHHHHHH
Q psy2964         141 YYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---D-WQWISVITIFPL  194 (208)
Q Consensus       141 ~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-w~~~~~~~~~~~  194 (208)
                      ...++.|.+|++.|++++++.++....+|..++|.+++.+.   + |++..+...+..
T Consensus       333 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~  390 (394)
T TIGR00883       333 MGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA  390 (394)
T ss_pred             HHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence            99999999999999999988556666778889998888775   4 776666554443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.29  E-value=1.1e-10  Score=96.74  Aligned_cols=140  Identities=12%  Similarity=0.027  Sum_probs=93.4

Q ss_pred             hHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh--cc-HH-HHHHHHHHHhhhhhh-HHHHHH
Q psy2964          68 NLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS--KD-VV-LFSLSRFLTGVGHFN-AFIFYY  142 (208)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~-~~-~~~~~~~l~g~~~~~-~~~~~~  142 (208)
                      ...+......++..++.++.++++||+|||+.++.+.++.+++.++....  ++ .+ ....+.++.+++.+. ..+..+
T Consensus       307 ~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (479)
T PRK10077        307 IALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCW  386 (479)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhH
Confidence            34555566777888999999999999999999999999988887765543  11 11 122233333333332 236678


Q ss_pred             HHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhh---------hhhHHHHHHHHHHHHH-HHHHHhccCCCC
Q psy2964         143 IIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL---------ADWQWISVITIFPLIV-GLIVAIFTPESA  208 (208)
Q Consensus       143 ~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~---------~~w~~~~~~~~~~~~~-~~~~~~~~petp  208 (208)
                      .+++|.+|+++|+.++|+ ......+|..+++.+...+         .+|++.|++.++..++ .++.+++.||+.
T Consensus       387 ~~~~e~~p~~~r~~~~g~-~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  461 (479)
T PRK10077        387 VLLSEIFPNAIRGKALAI-AVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK  461 (479)
T ss_pred             HHhHhhCChhHHHHHHHH-HHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCC
Confidence            999999999999999999 4556666666654333221         1567777776665555 334455678763

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.29  E-value=8e-11  Score=96.17  Aligned_cols=141  Identities=12%  Similarity=-0.006  Sum_probs=88.3

Q ss_pred             ecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhh---hc-----cHHHHHHHHH
Q psy2964          57 RRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPF---SK-----DVVLFSLSRF  128 (208)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~  128 (208)
                      +++++   +..+.++..+++.++..+++++.|+++||+|||++++.+..+.++.......   .+     ......+..+
T Consensus        39 ~~~g~---s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (420)
T PRK09528         39 DINGL---SGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGI  115 (420)
T ss_pred             HhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34666   6778999999999999999999999999999999998866655544321111   11     0111122233


Q ss_pred             HHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHhc
Q psy2964         129 LTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA--DWQWISVITIFPLIVGLIVAIF  203 (208)
Q Consensus       129 l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~--~w~~~~~~~~~~~~~~~~~~~~  203 (208)
                      ..|.+.....+....+..+.  .++++..++. ......+|..++|.+++.+.  +|++.|++.++..++..+..+.
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~-~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~  189 (420)
T PRK09528        116 YLGFGFLAGAGAIEAYIERV--SRRSGFEYGR-ARMWGSLGWALCAFIAGILFNINPQINFWLGSGSALILLVLLFF  189 (420)
T ss_pred             HhhhhhccchhhhhhHHHHH--Hhhccccchh-hHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHhc
Confidence            33333222223333333222  2345556666 44456778888888888775  8999998877776664444433

>KOG2504|consensus

Probab=99.29  E-value=2.5e-11  Score=100.94  Aligned_cols=142  Identities=22%  Similarity=0.234  Sum_probs=117.0

Q ss_pred             cceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHH-HHHHh
Q psy2964          53 RRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLS-RFLTG  131 (208)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~g  131 (208)
                      ..+.++++-   +..+.+|+.++......+.+++.+.+.||+|.|.+.+.+.++..++.++..++++.|.+++. -++.|
T Consensus        70 ~~~~~~f~~---s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G  146 (509)
T KOG2504|consen   70 EELMDYFGS---SSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGG  146 (509)
T ss_pred             HHHHHHhCC---CccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence            344455553   55669999999999999999999999999999999999999999999999999999887765 58999


Q ss_pred             hhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHH
Q psy2964         132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLI  199 (208)
Q Consensus       132 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~  199 (208)
                      +|.+..+....+.+...| .|+|+.++|+. ..+.++|.++-|.+...+.   |||+.+++.+.+.+...+
T Consensus       147 ~G~~~~~~paiviv~~YF-~kkR~lA~Gia-~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~  215 (509)
T KOG2504|consen  147 LGLGLIYLPAVVILGTYF-EKKRALATGIA-VSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLV  215 (509)
T ss_pred             ccchhhhcchhhhhhhHh-HHHHHHHHhhh-hccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            999999888888888666 67899999994 5577888877766666654   999998887766655444

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.29  E-value=2.6e-10  Score=93.54  Aligned_cols=140  Identities=10%  Similarity=-0.022  Sum_probs=86.7

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHh--h--hccHHHHHHHHHHHhhhhhhHHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTP--F--SKDVVLFSLSRFLTGVGHFNAFIF  140 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~l~g~~~~~~~~~  140 (208)
                      +..+.+...++..++..+++++.|+++||+|||+.+..+.++..+......  .  ..+....+..-.+..++.+...+.
T Consensus       277 s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (432)
T PRK10406        277 HANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSI  356 (432)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            344566667777777788899999999999999988776655433332111  1  122322222222222333344456


Q ss_pred             HHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh--h-hHHHHHHHHHHHHHHHHHHhcc
Q psy2964         141 YYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA--D-WQWISVITIFPLIVGLIVAIFT  204 (208)
Q Consensus       141 ~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~--~-w~~~~~~~~~~~~~~~~~~~~~  204 (208)
                      .+.+.+|.+|++.|++++|+.++.+..+.....|.+.+.+.  + |...+++.++..++..+..+++
T Consensus       357 ~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~l  423 (432)
T PRK10406        357 SGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLML  423 (432)
T ss_pred             HHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence            77889999999999999999776656554445777776664  3 4455555555555544443333

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.28  E-value=1.2e-10  Score=97.30  Aligned_cols=133  Identities=15%  Similarity=0.200  Sum_probs=87.8

Q ss_pred             HHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhc----cHHHHHHHHHHHhhhhhhHHHHHHHHHHhhcC
Q psy2964          75 IFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSK----DVVLFSLSRFLTGVGHFNAFIFYYIIVLECVG  150 (208)
Q Consensus        75 ~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~  150 (208)
                      +..++..++.++.++++||+|||+.++.+..+..++..+.+...    +...+...-+...++.....+..+.+.+|.+|
T Consensus       343 ~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p  422 (502)
T TIGR00887       343 IALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFP  422 (502)
T ss_pred             HHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCc
Confidence            34456677888999999999999999888887777765555431    11111111111122222223567788899999


Q ss_pred             CchhhhHHhHHHHHHHHHHHHHHHHHHHhhhh-------------hHHHHHHHHHHHHHHHHHHhccCCCC
Q psy2964         151 PKWRTFAMTFPFLIFYTVSEVALPWIAYYLAD-------------WQWISVITIFPLIVGLIVAIFTPESA  208 (208)
Q Consensus       151 ~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~-------------w~~~~~~~~~~~~~~~~~~~~~petp  208 (208)
                      ++.|++++++. +....++..++|.+.+.+.+             +...+++.+++.++..+..+++|||.
T Consensus       423 ~~~R~~~~g~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt~  492 (502)
T TIGR00887       423 TRYRSTAHGIS-AASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIPETK  492 (502)
T ss_pred             hhHHHHHHHHH-HHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHheEeccCC
Confidence            99999999994 55666788888877765532             23456666666666555567789984

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.27  E-value=5.6e-10  Score=92.39  Aligned_cols=145  Identities=14%  Similarity=0.174  Sum_probs=120.1

Q ss_pred             cccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCch--HHHHHHHHHHHHHHHHHhh--------hccHHHHHHHH
Q psy2964          58 RDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRI--TAVLGSHVVSFLGVALTPF--------SKDVVLFSLSR  127 (208)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr--~~l~~~~~~~~~~~~~~~~--------~~~~~~~~~~~  127 (208)
                      ++++   +..+...+..+.++..++|++++|++.||+|.|  ++++.+.++..+..+...+        .++.+.+.+.-
T Consensus       311 ~lg~---s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a  387 (477)
T PF11700_consen  311 VLGM---STTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLA  387 (477)
T ss_pred             hcCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHH
Confidence            4455   455666677778889999999999999999999  8888888887665555444        56778888899


Q ss_pred             HHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHhc
Q psy2964         128 FLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA----DWQWISVITIFPLIVGLIVAIF  203 (208)
Q Consensus       128 ~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~  203 (208)
                      ++.|++.|..++..-++.+|+.|+++.+..+|+ +.+..-....+||++.+.+.    +-|+.+....++.++++++.+.
T Consensus       388 ~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgl-y~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~  466 (477)
T PF11700_consen  388 VLIGLFMGGIQSASRSLFSRLIPPGREAEFFGL-YAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFF  466 (477)
T ss_pred             HHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999 88888899999999988886    4677777777777777766666


Q ss_pred             cCC
Q psy2964         204 TPE  206 (208)
Q Consensus       204 ~pe  206 (208)
                      ++.
T Consensus       467 v~~  469 (477)
T PF11700_consen  467 VDV  469 (477)
T ss_pred             ccc
Confidence            553

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK03699 putative transporter; Provisional

Probab=99.26  E-value=2.4e-10  Score=92.65  Aligned_cols=142  Identities=9%  Similarity=-0.007  Sum_probs=108.0

Q ss_pred             ccee-ecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHh
Q psy2964          53 RRRR-RRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTG  131 (208)
Q Consensus        53 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  131 (208)
                      +.+. +++++   +..+.+...+.+.++..++.+..|+++||+|||+.+.....+..+...+....++.+.+.+..++.|
T Consensus       229 p~~l~~~~g~---s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  305 (394)
T PRK03699        229 PEYAQKKFGM---SLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLG  305 (394)
T ss_pred             HHHHHHHcCC---ChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence            4444 34455   5667888888999999999999999999999999998888777776666666677766667778888


Q ss_pred             hhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHH
Q psy2964         132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLI  199 (208)
Q Consensus       132 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~  199 (208)
                      ++.+...+...++..|..|. .++...+. ......+|..++|.+.+.+.   +++..+++.+++.+++..
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~-~~~~~~g~-~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~  374 (394)
T PRK03699        306 FFSSAIYTTIITLGSQQTKV-ASPKLVNF-ILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFV  374 (394)
T ss_pred             HHHHHHHHHHHHHHHHHccC-CCHHHHHH-HHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHH
Confidence            88887778888888887764 45667777 44566789999999988875   788877766655555433

>PRK03545 putative arabinose transporter; Provisional

Probab=99.26  E-value=5.7e-10  Score=90.29  Aligned_cols=132  Identities=12%  Similarity=0.124  Sum_probs=100.5

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHH-HHhhhccHHHHHHHHHHHhhhhhhHHHHHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVA-LTPFSKDVVLFSLSRFLTGVGHFNAFIFYYI  143 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~  143 (208)
                      +....++..+...++..+++++.|+++||+|||.... +..+..++.. +....++.+.+.++.++.|++.+...+....
T Consensus       239 s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~  317 (390)
T PRK03545        239 SENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQV  317 (390)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHH
Confidence            5567788888889999999999999999999987544 4444444433 3344567777777888888887766677778


Q ss_pred             HHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHH
Q psy2964         144 IVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLI  199 (208)
Q Consensus       144 ~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~  199 (208)
                      .+.+..| +.|++++++ ++....+|..+||.+++.+.   +++..+++.+++.+++++
T Consensus       318 ~~~~~~~-~~~~~~~g~-~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~  374 (390)
T PRK03545        318 KVLKLAP-DATDVAMAL-FSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALV  374 (390)
T ss_pred             HHHHhCC-CcHHHHHHH-HHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHH
Confidence            8888876 688999998 56677889999999988876   788888887776666443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.25  E-value=8.2e-11  Score=96.36  Aligned_cols=148  Identities=17%  Similarity=0.123  Sum_probs=104.3

Q ss_pred             eecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhh----hCch-HHHHHHHHHHHHHHHHHhhhcc------HHHHH
Q psy2964          56 RRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADR----YGRI-TAVLGSHVVSFLGVALTPFSKD------VVLFS  124 (208)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~Grr-~~l~~~~~~~~~~~~~~~~~~~------~~~~~  124 (208)
                      .+++++   +....+.+.++..+..++..++.|+++||    +||| +.++.+....+++.+++...++      ...+.
T Consensus        27 ~~~~g~---s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  103 (437)
T TIGR00792        27 TDVLGL---SAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAY  103 (437)
T ss_pred             HHccCC---CHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHH
Confidence            345666   67789999999999999999999999997    6874 4666777777777776665543      34455


Q ss_pred             HHHHHHhhhhhhHHHHHHHHHHhhc-CCchhhhHHhHHHHHHHHHHHHHHHHHHHhh----------hhhHHHHHHHHHH
Q psy2964         125 LSRFLTGVGHFNAFIFYYIIVLECV-GPKWRTFAMTFPFLIFYTVSEVALPWIAYYL----------ADWQWISVITIFP  193 (208)
Q Consensus       125 ~~~~l~g~~~~~~~~~~~~~~~e~~-~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~----------~~w~~~~~~~~~~  193 (208)
                      +.+++.+.+.+.......++..|.. ++++|++..++ ...+..+|..+++.+...+          .+|++.+.+.+++
T Consensus       104 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~-~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l  182 (437)
T TIGR00792       104 ITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTF-RRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALI  182 (437)
T ss_pred             HHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHH
Confidence            6667777777776667778888887 57889998877 5555556655443332211          1799988888777


Q ss_pred             HHHH-HHHHhccCCC
Q psy2964         194 LIVG-LIVAIFTPES  207 (208)
Q Consensus       194 ~~~~-~~~~~~~pet  207 (208)
                      .++. .+..+..||+
T Consensus       183 ~~~~~~~~~~~~~e~  197 (437)
T TIGR00792       183 GVVSLIICFFGTKER  197 (437)
T ss_pred             HHHHHHHHHcCCEec
Confidence            6664 3445556664

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.25  E-value=2.7e-10  Score=93.15  Aligned_cols=143  Identities=11%  Similarity=0.024  Sum_probs=97.7

Q ss_pred             eeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCc-hHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhh
Q psy2964          55 RRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGR-ITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVG  133 (208)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~  133 (208)
                      +.+++++   +..+.+++.+++.++..++++++|.++||+|| |+++..+.+...+...+..+.++++.+.+.+++.|++
T Consensus        29 l~~~~g~---s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  105 (418)
T TIGR00889        29 MSKTLHF---SGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLA  105 (418)
T ss_pred             HHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            3345666   67889999999999999999999999999965 7788888888878877888888899999999998887


Q ss_pred             hhhHHHHHHHHHH--------hhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHh
Q psy2964         134 HFNAFIFYYIIVL--------ECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIVAI  202 (208)
Q Consensus       134 ~~~~~~~~~~~~~--------e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~  202 (208)
                      .+...+...+...        |......|.+..|.       +|..++|.+++.+.   .|. ++++.++..++..+..+
T Consensus       106 ~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G~-------lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~~~  177 (418)
T TIGR00889       106 YMPTIALTNSISYANLPQAGLDVVTDFPPIRVMGT-------IGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVFAL  177 (418)
T ss_pred             HccHHHHHHHHHHHHHhhcCCCchhcCCCeeeehh-------HHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHHHh
Confidence            6655555444432        22222234444332       45556666666553   233 34455554545444556


Q ss_pred             ccCCCC
Q psy2964         203 FTPESA  208 (208)
Q Consensus       203 ~~petp  208 (208)
                      .+||+|
T Consensus       178 ~~~e~~  183 (418)
T TIGR00889       178 TLPDIP  183 (418)
T ss_pred             cCCCCC
Confidence            777764

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.24  E-value=5.3e-10  Score=90.67  Aligned_cols=150  Identities=13%  Similarity=0.146  Sum_probs=106.1

Q ss_pred             cceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhc-cHHHHHHHHHHHh
Q psy2964          53 RRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSK-DVVLFSLSRFLTG  131 (208)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g  131 (208)
                      +.+..++++   +....+...+++.++..++.++.+++.||+|||+.+..+..+..++..+....+ +....  ..++.|
T Consensus       229 p~~l~~~g~---s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g  303 (393)
T PRK09705        229 PAFYIEIGA---SAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCG  303 (393)
T ss_pred             HHHHHHcCC---ChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHHH
Confidence            444445554   566778888999999999999999999999999999888877777665544333 22222  234567


Q ss_pred             hhhhhHHHHHHHHHHhhcC-CchhhhHHhHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHH-HHHHhccC
Q psy2964         132 VGHFNAFIFYYIIVLECVG-PKWRTFAMTFPFLIFYTVSEVALPWIAYYLA----DWQWISVITIFPLIVG-LIVAIFTP  205 (208)
Q Consensus       132 ~~~~~~~~~~~~~~~e~~~-~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~~~~~-~~~~~~~p  205 (208)
                      ++.+...+.......+..+ +++|++..++ .+....++..++|.+.+++.    +|...+++..+..++. .....+.|
T Consensus       304 ~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  382 (393)
T PRK09705        304 LGLGGAFPLCLLLALDHSVQPAIAGKLVAF-MQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAP  382 (393)
T ss_pred             HhccchHHHHHHHHHhhcCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence            7777777777777777774 6789999998 45566677888888888876    3566676665555553 33456678


Q ss_pred             CCC
Q psy2964         206 ESA  208 (208)
Q Consensus       206 etp  208 (208)
                      |++
T Consensus       383 ~~~  385 (393)
T PRK09705        383 ARF  385 (393)
T ss_pred             ccc
Confidence            874

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.24  E-value=2.9e-10  Score=91.05  Aligned_cols=134  Identities=10%  Similarity=-0.029  Sum_probs=92.3

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchH--HHH------HHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhh
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRIT--AVL------GSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFN  136 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~--~l~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~  136 (208)
                      +....++..++..++..++.++.|+++||+|||+  ...      .+.+...+........++.+.......+.+++.+ 
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  327 (399)
T TIGR00893       249 SILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLG-  327 (399)
T ss_pred             cHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchh-
Confidence            4556778888889999999999999999999996  111      1111111111111112233433333444444444 


Q ss_pred             HHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---h-hHHHHHHHHHHHHHHHHH
Q psy2964         137 AFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---D-WQWISVITIFPLIVGLIV  200 (208)
Q Consensus       137 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-w~~~~~~~~~~~~~~~~~  200 (208)
                      ..+....++.|..|++.|++++++ .+....+|..++|.+.+.+.   + |++.+++.++..+++.+.
T Consensus       328 ~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~  394 (399)
T TIGR00893       328 AGAIGWALISDNAPGNIAGLTGGL-INSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALS  394 (399)
T ss_pred             hhhHHHHHHHhhcChhHHHHHHHH-HHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHH
Confidence            678999999999999999999999 66677899999999888875   5 888888777766664443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.24  E-value=3.1e-10  Score=90.28  Aligned_cols=116  Identities=20%  Similarity=0.169  Sum_probs=101.1

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhcc-HHHHHHHHHHHhhhhhhHHHHHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKD-VVLFSLSRFLTGVGHFNAFIFYYI  143 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~g~~~~~~~~~~~~  143 (208)
                      +..+.+.......++..++.++.+++.||+|||+.+..+..+.+++.......++ .+.+.+..++.|++.+...+....
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  324 (365)
T TIGR00900       245 GSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGT  324 (365)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5567788888899999999999999999999999999888777777777777664 777888899999999998899999


Q ss_pred             HHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh
Q psy2964         144 IVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA  181 (208)
Q Consensus       144 ~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~  181 (208)
                      ++.|..|+++|++..++ .+....++..++|.+.+.+.
T Consensus       325 ~~~~~~~~~~~g~~~~~-~~~~~~~~~~~g~~~~g~l~  361 (365)
T TIGR00900       325 LLQRRVPAELLGRVFGA-QFSLSHAAWPLGLILAGPLA  361 (365)
T ss_pred             HHHHhCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999 67778889999998888764

>TIGR00897 2A0118 polyol permease family

Probab=99.24  E-value=7.1e-10  Score=90.17  Aligned_cols=143  Identities=14%  Similarity=0.068  Sum_probs=100.6

Q ss_pred             cceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHH-HHHHHHHHHHHHHhh-----hccHHHHHHH
Q psy2964          53 RRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVL-GSHVVSFLGVALTPF-----SKDVVLFSLS  126 (208)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~-~~~~~~~~~~~~~~~-----~~~~~~~~~~  126 (208)
                      +.+.++.++   +..+.+...+...++..++.+..|+++||+|||+.+. .+.+...++......     .++.+...+.
T Consensus       246 p~~~~~~g~---s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~  322 (402)
T TIGR00897       246 PMFVAELGF---STSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALII  322 (402)
T ss_pred             HHHHHHcCC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHH
Confidence            444455555   4556677778888999999999999999999988764 333333333222221     2456666677


Q ss_pred             HHHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHH
Q psy2964         127 RFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIVA  201 (208)
Q Consensus       127 ~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~  201 (208)
                      .++.|++.+...+ ......|.. +++|++++|+ .+....+|..++|.+.+.+.   ||...+++.+++.++..+..
T Consensus       323 ~~~~G~~~~~~~~-~~~~~~~~~-~~~~g~~~g~-~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~  397 (402)
T TIGR00897       323 AIALGIFLAGYVP-LAAVFPTLA-PKHKGAAMSV-LNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLT  397 (402)
T ss_pred             HHHHHHHHHHHHH-HHHHHHhhC-cchhHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence            8888887776544 455667765 5689999999 67788899999998887775   77888888777766644433

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.21  E-value=3.3e-10  Score=91.49  Aligned_cols=116  Identities=17%  Similarity=0.206  Sum_probs=91.3

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHH-HHhhhccHHHHHHHHHHHhhhhhhHHHHHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVA-LTPFSKDVVLFSLSRFLTGVGHFNAFIFYYI  143 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~  143 (208)
                      +..+.++..+...++..++.++.+++.||+|||+.+..+.+...+... .....++.+.+.+..++.+++.+...+..+.
T Consensus       272 s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (405)
T TIGR00891       272 SPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPK  351 (405)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhHHH
Confidence            455678888889999999999999999999999998888776533332 2333455566666667777666666677888


Q ss_pred             HHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh
Q psy2964         144 IVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA  181 (208)
Q Consensus       144 ~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~  181 (208)
                      ++.|.+|+++|++++|+ ......+|..++|.+.+.+.
T Consensus       352 ~~~~~~~~~~~~~~~g~-~~~~~~~g~~~g~~~~g~l~  388 (405)
T TIGR00891       352 HLGEYFPTDQRAAGLGF-TYQLGNLGGALAPIIGALLA  388 (405)
T ss_pred             HHhhhCCcchhHHHhhH-HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999 55577788999999988876

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.20  E-value=4.1e-10  Score=93.82  Aligned_cols=126  Identities=13%  Similarity=0.047  Sum_probs=92.3

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh--ccHHHHHHHHHHHhhhhhhHHHHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS--KDVVLFSLSRFLTGVGHFNAFIFYY  142 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~  142 (208)
                      +..+.++..+.+.++..++.++.|+++||+|||+++..+..+..+..++....  .+.+......++.++......+..+
T Consensus       309 ~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (496)
T PRK03893        309 DPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLP  388 (496)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhH
Confidence            55678888999999999999999999999999999888877666655443332  2333333444444333333346677


Q ss_pred             HHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHH
Q psy2964         143 IIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITI  191 (208)
Q Consensus       143 ~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~  191 (208)
                      .++.|.+|+++|++++++ ......+|..++|.+.+.+.   +|+..+...+
T Consensus       389 ~~~~~~~~~~~~g~~~~~-~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~  439 (496)
T PRK03893        389 KLIGGYFDTEQRAAGLGF-TYNVGALGGALAPILGALIAQRLDLGTALASLS  439 (496)
T ss_pred             HHHHhhCCHHHhhcccch-hhhhhhHHHHHHHHHHHHHhccCChHHHHHHHH
Confidence            889999999999999999 55566789999999988876   6666665443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.19  E-value=1.3e-09  Score=88.41  Aligned_cols=131  Identities=10%  Similarity=0.035  Sum_probs=107.7

Q ss_pred             chHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q psy2964          67 SNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIVL  146 (208)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~  146 (208)
                      ...+...++..+...++.+..+++.||+|||+.+.++.++.++...+....++.+.+....++.|++.+........+..
T Consensus       254 ~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~  333 (396)
T TIGR00882       254 RVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYIT  333 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34577777778888889999999999999999999999888887777777888888888899999988777667777888


Q ss_pred             hhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHH
Q psy2964         147 ECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVG  197 (208)
Q Consensus       147 e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~  197 (208)
                      +..+++.+++..+..++....+|..+++.+++++.   ||+..|.+.+++.++.
T Consensus       334 ~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~  387 (396)
T TIGR00882       334 SQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLF  387 (396)
T ss_pred             HhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHH
Confidence            88888888887666456678889999998888875   7888888877766553

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.19  E-value=2.9e-10  Score=94.01  Aligned_cols=133  Identities=14%  Similarity=0.054  Sum_probs=104.1

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhh--CchHHHHHH--HHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRY--GRITAVLGS--HVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIF  140 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Grr~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~  140 (208)
                      +....++..++..++..+++++.|+++||.  ++|+...++  .+..+++.++....++++.+.+.+++.|++.+...+.
T Consensus       274 s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~  353 (455)
T TIGR00892       274 DEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGAL  353 (455)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHH
Confidence            456778888889999999999999999973  344433333  3333344445556778888888999999999888889


Q ss_pred             HHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHH
Q psy2964         141 YYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA----DWQWISVITIFPLIVGL  198 (208)
Q Consensus       141 ~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~~~~~~  198 (208)
                      ...++.|.+|++++++.+++ ++....+|..++|.+++.+.    +|++.|++.++..+++.
T Consensus       354 ~~~~~~~~~~~~~~g~~~g~-~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~  414 (455)
T TIGR00892       354 LFEVLMDLVGAQRFSSAVGL-VTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAG  414 (455)
T ss_pred             HHHHHHHHhhHHHHhhHHhH-HHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHH
Confidence            99999999999999999999 67788899999999998764    58888887766555533

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.18  E-value=2.2e-09  Score=86.71  Aligned_cols=139  Identities=8%  Similarity=-0.033  Sum_probs=108.4

Q ss_pred             ecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhh
Q psy2964          57 RRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFN  136 (208)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~  136 (208)
                      ++.++   +....+...++..++..+..++.+++.||+|+|+.+..+.+..++..+.....++.+.+++..++.|++.+.
T Consensus       233 ~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~  309 (382)
T PRK11128        233 QAAGY---SASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTV  309 (382)
T ss_pred             HHCCC---CHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            44454   455678888888888899999999999999999999999999888887788888888888899999999988


Q ss_pred             HHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHH
Q psy2964         137 AFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIV  200 (208)
Q Consensus       137 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~  200 (208)
                      ..+....++.+. +++++++..+.........|..++|.+++.+.   ++ ..++..+++.+++++.
T Consensus       310 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T PRK11128        310 CHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPALFI  374 (382)
T ss_pred             HHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            888888888887 55567888887444566778889999999886   44 3455555555544433

>PRK15075 citrate-proton symporter; Provisional

Probab=99.18  E-value=2e-09  Score=88.45  Aligned_cols=117  Identities=11%  Similarity=0.020  Sum_probs=82.3

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHH-H-h--hhccHHHHHHHHHHHhhhhhhHHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVAL-T-P--FSKDVVLFSLSRFLTGVGHFNAFIF  140 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~-~-~--~~~~~~~~~~~~~l~g~~~~~~~~~  140 (208)
                      +..+.++....+.++..++.++.|+++||+|||++++.+.++..+.... . .  ..++.........+.+++.+...+.
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  351 (434)
T PRK15075        272 SAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGA  351 (434)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhh
Confidence            3445677777888889999999999999999999988765554332211 1 1  1233333444455556666666667


Q ss_pred             HHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh
Q psy2964         141 YYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA  181 (208)
Q Consensus       141 ~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~  181 (208)
                      .+.++.|.+|++.|+.++++.++.+..++..++|.+.+++.
T Consensus       352 ~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~  392 (434)
T PRK15075        352 MVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLI  392 (434)
T ss_pred             HHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHH
Confidence            77889999999999999998656555555667887777664

>TIGR00895 2A0115 benzoate transport

Probab=99.17  E-value=6.1e-10  Score=89.60  Aligned_cols=115  Identities=19%  Similarity=0.206  Sum_probs=91.3

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYII  144 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  144 (208)
                      +....+...++..++..++.++.++++||+|||+.+....+.......+....++.+...+..++.|++.+...+...++
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  362 (398)
T TIGR00895       283 SLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYAL  362 (398)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45567888888999999999999999999999955444443333333333335666777788889999999999999999


Q ss_pred             HHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhh
Q psy2964         145 VLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL  180 (208)
Q Consensus       145 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~  180 (208)
                      +.|.+|+++|++++|+ ......+|..++|.+.+.+
T Consensus       363 ~~~~~~~~~~g~~~g~-~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       363 MALFYPTAIRATGVGW-AIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HhhcCCHHHHHHHHHH-HHHHHHHHHHHHHHhHHhc
Confidence            9999999999999999 5667789999999888764

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.16  E-value=2.6e-09  Score=89.41  Aligned_cols=131  Identities=19%  Similarity=0.188  Sum_probs=113.4

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYII  144 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  144 (208)
                      +....|++.+.+.+|.++|+++.+++.+|+++++.+..+.+..+++.+..++.++.+...+..++.|++.........+.
T Consensus       252 ~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t~  331 (524)
T PF05977_consen  252 GASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLNTL  331 (524)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56778999999999999999999999999999999999999999999999999999999999999999999998899999


Q ss_pred             HHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHH
Q psy2964         145 VLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIV  196 (208)
Q Consensus       145 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~  196 (208)
                      +.+..|++.||+.+++ +......+..+|..+.+.+.   |-+..+.+.++..++
T Consensus       332 ~Q~~~P~~~~GRv~si-~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll  385 (524)
T PF05977_consen  332 VQLSVPDWVRGRVFSI-YQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLL  385 (524)
T ss_pred             HHHhCCHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            9999999999999999 66677777788888888776   555566655554444

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.15  E-value=2.8e-09  Score=88.94  Aligned_cols=139  Identities=9%  Similarity=0.188  Sum_probs=99.2

Q ss_pred             CCchHHHHHH-HHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHH---hhh-ccHHHHHHHHHHHhhhhhhHHH
Q psy2964          65 GSSNLAITRS-IFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALT---PFS-KDVVLFSLSRFLTGVGHFNAFI  139 (208)
Q Consensus        65 ~~~~~~~~~~-~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~l~g~~~~~~~~  139 (208)
                      +..+.++... ...++.+++.++.|+++||+|+|+.+..+.++.++.....   ... ++.+.+....++..++.+...+
T Consensus       256 s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~  335 (491)
T PRK11010        256 DAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTA  335 (491)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence            5566777764 5567899999999999999999988777666555443322   222 3444445556666666666667


Q ss_pred             HHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHhcc
Q psy2964         140 FYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIVAIFT  204 (208)
Q Consensus       140 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~  204 (208)
                      ...++..+..+++.+++..++ .+....+|..+++.+.+.+.   ||+..|.+..++.+++++.....
T Consensus       336 ~~~a~~~~l~~~~~~~t~~gl-~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~  402 (491)
T PRK11010        336 AFVALLMTLCNKSFSATQFAL-LSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC  402 (491)
T ss_pred             HHHHHHHHHcCCCCcHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence            778999999999999999998 66667788776666666654   78888888777777755544433

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.15  E-value=1.8e-09  Score=88.16  Aligned_cols=116  Identities=15%  Similarity=0.069  Sum_probs=81.8

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHh--hhhhhHHHHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTG--VGHFNAFIFYY  142 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g--~~~~~~~~~~~  142 (208)
                      +....+...++..++..++.++.|++.||+|||+.+..+.++..+........++.......-.+.|  ++.....+..+
T Consensus       264 ~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (426)
T PRK12307        264 DTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVP  343 (426)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHH
Confidence            4455677778888999999999999999999999998888776665544433322111122222222  22222335566


Q ss_pred             HHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh
Q psy2964         143 IIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA  181 (208)
Q Consensus       143 ~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~  181 (208)
                      .++.|.+|++.|++++|+. .....+|..++|.+.+++.
T Consensus       344 ~~~~~~~p~~~~g~~~g~~-~~~~~~~~~~gp~~~g~l~  381 (426)
T PRK12307        344 KFLYDYFPLEVRGLGTGLI-YNLAATSGTFNSMAATWLG  381 (426)
T ss_pred             HHHHHhCcHHHHhhhhhHH-HHHHhHHHHHHHHHHHHHH
Confidence            7889999999999999994 4466678889999888876

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.13  E-value=1.7e-09  Score=86.21  Aligned_cols=145  Identities=13%  Similarity=0.121  Sum_probs=123.4

Q ss_pred             cccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhH
Q psy2964          58 RDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNA  137 (208)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~  137 (208)
                      ++++   ++.+...+....++..++|++++|++.||+|.|+++..+.++..+.++...+......+.++-.+.|...|..
T Consensus       282 ~~gl---s~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~  358 (438)
T COG2270         282 DLGL---SSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGA  358 (438)
T ss_pred             HcCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchH
Confidence            5666   5667777778888899999999999999999999999999999998887777777777778889999999999


Q ss_pred             HHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHhccCC
Q psy2964         138 FIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA----DWQWISVITIFPLIVGLIVAIFTPE  206 (208)
Q Consensus       138 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~~pe  206 (208)
                      ++..-+|..+..|+++-++.+|+ ++.....+..++|++.+.+.    +-|.-+...+++..++++....+|+
T Consensus       359 qA~SRSy~~~lvp~~k~~~fFgl-yaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~  430 (438)
T COG2270         359 QASSRSYLARLVPKGKEGRFFGL-YALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKV  430 (438)
T ss_pred             HHHHHHHHHHhCCCccccceeeh-hhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecC
Confidence            99999999999999999999999 88898999999999888875    5566666666666667776666653

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.11  E-value=1.8e-09  Score=98.32  Aligned_cols=127  Identities=9%  Similarity=-0.009  Sum_probs=103.9

Q ss_pred             CCc-hHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHH
Q psy2964          65 GSS-NLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYI  143 (208)
Q Consensus        65 ~~~-~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~  143 (208)
                      +.. ..+++.+...++.+++.++.++++||+++|+.+.++.++.+++.++.....+.+.++++.++.|++.+...+...+
T Consensus       266 s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  345 (1146)
T PRK08633        266 DNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNA  345 (1146)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            445 6788888999999999999999999999999999988888888887777778888888889999999988888999


Q ss_pred             HHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHH
Q psy2964         144 IVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA----DWQWISVITIF  192 (208)
Q Consensus       144 ~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~  192 (208)
                      ++.+..|++.|++++|+ .+....+|..+++.+++.+.    ++...+++.+.
T Consensus       346 ~~~~~~p~~~rg~~~~~-~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~  397 (1146)
T PRK08633        346 LIQFRAPEKELGKVLAA-NNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIAL  397 (1146)
T ss_pred             HHhhcCCccchhhhhHH-HHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            99999999999999998 66667777777776666553    33344444433

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.10  E-value=1.1e-08  Score=83.95  Aligned_cols=116  Identities=14%  Similarity=0.238  Sum_probs=93.5

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHHHHhhhhhhHHHHHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS-KDVVLFSLSRFLTGVGHFNAFIFYYI  143 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~  143 (208)
                      +....++...+..++.+++.+++++++||+|+|+.+..+.++.+++.....+. ++.+.+.+..++.|++.+...+..++
T Consensus       255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  334 (437)
T TIGR00792       255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA  334 (437)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456677777889999999999999999999999999988888877666554 35566667778888888888888999


Q ss_pred             HHHhhcC-------CchhhhHHhHHHHHHHHHHHHHHHHHHHhhh
Q psy2964         144 IVLECVG-------PKWRTFAMTFPFLIFYTVSEVALPWIAYYLA  181 (208)
Q Consensus       144 ~~~e~~~-------~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~  181 (208)
                      +++|..+       ++.++...|+ .+....+|..+++.+.+.+.
T Consensus       335 ~~~~~~~~~~~~~~~~~~G~~~~~-~~~~~~~g~~lg~~i~g~ll  378 (437)
T TIGR00792       335 LVADTVDYGEWKTGVRAEGLVYSV-RTFVRKLGQALAGFLVGLIL  378 (437)
T ss_pred             HHhhhhhhhhhhcCccchHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            9998865       5567888888 67788888888888877663

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.08  E-value=1.2e-08  Score=82.69  Aligned_cols=141  Identities=11%  Similarity=-0.025  Sum_probs=98.9

Q ss_pred             eeecccccccCCchHHHHHHHHH-HHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhh------hccHHHHHHHH
Q psy2964          55 RRRRDNWVCDGSSNLAITRSIFF-LGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPF------SKDVVLFSLSR  127 (208)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~~  127 (208)
                      +..+.++   +..+.++...+.. ....++.++.|++.||+|+|+.+..+.++..........      .++........
T Consensus       234 ~l~~~G~---s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (390)
T TIGR02718       234 YLVDAGW---PLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCS  310 (390)
T ss_pred             HHHhcCC---CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHH
Confidence            3344555   5566777766665 466778899999999999999998877665333222211      12333344445


Q ss_pred             HHHhhhhhhHHHHHHHHHHhhcCC-chhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHH
Q psy2964         128 FLTGVGHFNAFIFYYIIVLECVGP-KWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLI  199 (208)
Q Consensus       128 ~l~g~~~~~~~~~~~~~~~e~~~~-~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~  199 (208)
                      .+.+++.+...+.......+..++ +.+++.+++ .+....+|..++|.+++.+.   |++..|...+++.+++.+
T Consensus       311 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       311 AFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTA-VQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            556666777777778887777765 889999999 67788999999999998876   677777777666655443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG2325|consensus

Probab=99.08  E-value=1.6e-09  Score=88.61  Aligned_cols=114  Identities=17%  Similarity=0.134  Sum_probs=94.2

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCc-hHHHHHHHHHHHHHHHHHhhh----c-cHHHHHHHHHHHhhhhhhHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGR-ITAVLGSHVVSFLGVALTPFS----K-DVVLFSLSRFLTGVGHFNAF  138 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~l~g~~~~~~~  138 (208)
                      +...-|++.++..++.+++++.+|+.+.|.|. |+.++.|.++..+++++....    + ..+.++++|++.|+|.+.. 
T Consensus        69 ~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~-  147 (488)
T KOG2325|consen   69 TATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNF-  147 (488)
T ss_pred             CcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccH-
Confidence            45678999999999999999999999999996 778899999999999887332    3 5788899999999997776 


Q ss_pred             HHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhh
Q psy2964         139 IFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL  180 (208)
Q Consensus       139 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~  180 (208)
                      ...-.|+++-...+.|.++++. ...+..+|..+||.+...+
T Consensus       148 a~lR~Y~a~~s~~~dR~rA~a~-~~~~~vlg~ilGp~~q~~f  188 (488)
T KOG2325|consen  148 AVLRAYIADASTVEDRPRAFAA-TSGGFVLGIILGPTIQLAF  188 (488)
T ss_pred             HHHHHHHHhccCccchHHHHHH-hhhHHHHHHHHhHHHHHHH
Confidence            6778999998888888888877 4556677777777766655

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.07  E-value=1.1e-08  Score=80.14  Aligned_cols=145  Identities=12%  Similarity=0.117  Sum_probs=124.6

Q ss_pred             ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHh
Q psy2964          52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTG  131 (208)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  131 (208)
                      .+.+.+++++   +....+.++++..+...+.+++..++..|+|.++.+..++++.+++..+=... +.+.++.+..+.|
T Consensus        35 L~~Ir~~~gl---s~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G  110 (395)
T COG2807          35 LDEIRQDLGL---SFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAG  110 (395)
T ss_pred             HHHHHHHhcc---cHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHH
Confidence            5677788887   78889999999999999999999999999999999999999999998876666 7788899999999


Q ss_pred             hhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHh
Q psy2964         132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA----DWQWISVITIFPLIVGLIVAI  202 (208)
Q Consensus       132 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~  202 (208)
                      .+.+......+.++-+-+|+| -+..+++ |+...++|..+++.+...+.    +||....+-+++++++++.|.
T Consensus       111 ~gIav~nVLLPslIK~~Fpk~-~~~mtgl-Ys~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~Wl  183 (395)
T COG2807         111 AGIAVINVLLPSLIKRDFPKR-VGLMTGL-YSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWL  183 (395)
T ss_pred             hhHHHHHHhhhHHHHhhcccc-hhhHHhH-HHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999755 6788888 77777787777766555543    799999988888888777665

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.07  E-value=1e-08  Score=84.68  Aligned_cols=134  Identities=14%  Similarity=0.137  Sum_probs=84.2

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhh--CchHHH-HHHHHHHHHHHHHHhh--hccHHHHHHHHHHHhhhhhhHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRY--GRITAV-LGSHVVSFLGVALTPF--SKDVVLFSLSRFLTGVGHFNAFI  139 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Grr~~l-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~g~~~~~~~~  139 (208)
                      +....++...++.++..++.+++|+++||+  |||... +....+..++......  ..+.+...+..++.|........
T Consensus       287 s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  366 (452)
T PRK11273        287 ALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVM  366 (452)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHH
Confidence            345567777788889999999999999999  555432 2222222222222222  23444444445555554333233


Q ss_pred             HHHHHHHhhcCCchhhhHHhHHHHHHHHHHHH-HHHHHHHhhh---hhHHHHHHHHHHHHHHHH
Q psy2964         140 FYYIIVLECVGPKWRTFAMTFPFLIFYTVSEV-ALPWIAYYLA---DWQWISVITIFPLIVGLI  199 (208)
Q Consensus       140 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~-~~~~~~~~~~---~w~~~~~~~~~~~~~~~~  199 (208)
                      ....+..|.+|++.|+++.|+ .+....+|.. .+|.+.+.+.   +|+..|++.+...+++.+
T Consensus       367 ~~~~~~~~~~p~~~~g~~~g~-~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~  429 (452)
T PRK11273        367 LIGLHALELAPKKAAGTAAGF-TGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVI  429 (452)
T ss_pred             HHHHHHHHHcChhhhhhHHHH-HHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            445667899999999999999 4545555544 4787777665   788888877666555433

>PRK10504 putative transporter; Provisional

Probab=99.06  E-value=1.8e-08  Score=83.49  Aligned_cols=116  Identities=16%  Similarity=0.095  Sum_probs=93.0

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh---ccHHHHHHHHHHHhhhhhhHHHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS---KDVVLFSLSRFLTGVGHFNAFIFY  141 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~  141 (208)
                      +....++......++..++.++.+++.||+|||+++..+.++..+...+....   ++.+.+....++.|++.+...+..
T Consensus       295 ~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  374 (471)
T PRK10504        295 SPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSM  374 (471)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566777777778888888999999999999999998888777776655543   333334455677788888888888


Q ss_pred             HHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh
Q psy2964         142 YIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA  181 (208)
Q Consensus       142 ~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~  181 (208)
                      ..+..+..|++.|+.+.++ .+....+|..+++.+.+.+.
T Consensus       375 ~~~~~~~~~~~~~g~~~~~-~~~~~~~g~~ig~~i~g~ll  413 (471)
T PRK10504        375 NTLTLKDLPDNLASSGNSL-LSMIMQLSMSIGVTIAGLLL  413 (471)
T ss_pred             HHHHHHcCCHHhccchHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999 78888899999988887764

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.05  E-value=1.2e-08  Score=83.89  Aligned_cols=133  Identities=17%  Similarity=0.169  Sum_probs=86.2

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhh--C-chHHHHHHHHHHHHHHHHHh--hhccHHHHHHHHHHHhhhhhhHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRY--G-RITAVLGSHVVSFLGVALTP--FSKDVVLFSLSRFLTGVGHFNAFI  139 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--G-rr~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~g~~~~~~~~  139 (208)
                      +....+...+.+.++..++.++.|+++||+  + ||.......+...+......  ...+........+..|++......
T Consensus       277 s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  356 (434)
T PRK11663        277 DLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAACFFTIGFFVFGPQM  356 (434)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhhHHH
Confidence            455677888889999999999999999999  3 33332222222221111111  122333333334444543322223


Q ss_pred             HHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHH
Q psy2964         140 FYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGL  198 (208)
Q Consensus       140 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~  198 (208)
                      .......|.+|++.|++++|+ .+....+|..++|.+.+.+.   +|+..|++.+++.++..
T Consensus       357 ~~~~~~~~~~~~~~~g~~~g~-~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~  417 (434)
T PRK11663        357 LIGMAAAECSHKEAAGAATGF-VGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISA  417 (434)
T ss_pred             HHHHHHHhcccHhhHHhHHHH-HHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            445677899999999999999 66778889999988887765   78888888777766533

>TIGR00788 fbt folate/biopterin transporter

Probab=99.05  E-value=4.6e-09  Score=87.15  Aligned_cols=147  Identities=12%  Similarity=0.025  Sum_probs=102.9

Q ss_pred             eeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhC-----chHHHHHHHHHHH-HHHHHHhhhccHHHHH-HHH
Q psy2964          55 RRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYG-----RITAVLGSHVVSF-LGVALTPFSKDVVLFS-LSR  127 (208)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G-----rr~~l~~~~~~~~-~~~~~~~~~~~~~~~~-~~~  127 (208)
                      +.+++++   +..+.+...+...+...+-.+ +|+++||++     ||+.++++.++.. +.....+..++..... +..
T Consensus        52 l~~~lg~---s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~  127 (468)
T TIGR00788        52 LTDDLGL---DGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFI  127 (468)
T ss_pred             HHHhcCC---CHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence            4445676   667777778888888888555 999999998     7887777776653 3333333334433333 478


Q ss_pred             HHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHH---HHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHH
Q psy2964         128 FLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIF---YTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIVA  201 (208)
Q Consensus       128 ~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~---~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~  201 (208)
                      ++.+++.+......-.+..|..+ +++....+. .+..   ..+|..+++.+++.+.   +|+..|++.++..++..+..
T Consensus       128 ~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~-~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~  205 (468)
T TIGR00788       128 FLAALAKALYDVLVDSLYSERIR-ESPSAGPSL-VSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVS  205 (468)
T ss_pred             HHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCe-eeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH
Confidence            89999999999999999999998 555443222 2222   3468888888888765   79999988877766665556


Q ss_pred             hccCCC
Q psy2964         202 IFTPES  207 (208)
Q Consensus       202 ~~~pet  207 (208)
                      +++||.
T Consensus       206 ~~~~E~  211 (468)
T TIGR00788       206 NLSKER  211 (468)
T ss_pred             Hhcccc
Confidence            677774

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.04  E-value=1.7e-08  Score=81.54  Aligned_cols=140  Identities=16%  Similarity=0.162  Sum_probs=115.3

Q ss_pred             CchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHHH
Q psy2964          66 SSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIV  145 (208)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  145 (208)
                      +...|.+.++..+.-++.-.+..++.+|+|.|+.++++..++.+=...++++++++.+.+.+.+.|+-.+.......-|+
T Consensus       258 ~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI  337 (412)
T PF01306_consen  258 NQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYI  337 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34577888888888888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHH-HHHHHhccC
Q psy2964         146 LECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIV-GLIVAIFTP  205 (208)
Q Consensus       146 ~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~-~~~~~~~~p  205 (208)
                      ++.+|+|..++...+..+....+|..+.+.+++.+.   |.+..|++.+.+.++ .++..+.++
T Consensus       338 ~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~  401 (412)
T PF01306_consen  338 TAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLK  401 (412)
T ss_dssp             HHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred             HHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeec
Confidence            999999999888888777888888888877777776   777788877766655 444455553

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.02  E-value=2.7e-08  Score=79.91  Aligned_cols=112  Identities=10%  Similarity=0.102  Sum_probs=86.4

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh-----ccHHHHHHHHHHHhhhhhhHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS-----KDVVLFSLSRFLTGVGHFNAFI  139 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~~~~~~~~  139 (208)
                      ++...+.......++..++.++.|++.||+|||+.+..+..+..++..+....     ++...+....++.|++.+...+
T Consensus       240 ~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  319 (385)
T TIGR00710       240 SPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMISS  319 (385)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence            45667888888899999999999999999999999988887777766555443     2334445566788888888888


Q ss_pred             HHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHH
Q psy2964         140 FYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIA  177 (208)
Q Consensus       140 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~  177 (208)
                      ....+..|..| ++|+++.++.....+..|...+|.++
T Consensus       320 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~  356 (385)
T TIGR00710       320 IAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS  356 (385)
T ss_pred             HHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888886 67899998855555566777777766

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.98  E-value=6.1e-09  Score=86.60  Aligned_cols=138  Identities=10%  Similarity=-0.123  Sum_probs=89.9

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCch-------HHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRI-------TAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNA  137 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr-------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~  137 (208)
                      +....+...+++.++..++.+++|+++||+|||       ..+....++.++..++....++.+...+..++.+++.+..
T Consensus       286 s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~  365 (476)
T PLN00028        286 SLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQAA  365 (476)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHh
Confidence            455678888889999999999999999999876       2333333333333344444555555555555566655555


Q ss_pred             HHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHhcc
Q psy2964         138 FIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA--DWQWISVITIFPLIVGLIVAIFT  204 (208)
Q Consensus       138 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~--~w~~~~~~~~~~~~~~~~~~~~~  204 (208)
                      .+..+.+..+.. ++.|+...|+ ...+..+|..++|.+...-.  +|+..|++.+++.+++.++.++.
T Consensus       366 ~~~~~~~~~~~~-~~~~g~~~g~-~~~~g~lg~~i~~~l~~~~~~~~y~~~f~~~~~~~~i~~~~~~~~  432 (476)
T PLN00028        366 CGATFGIVPFVS-RRSLGVISGL-TGAGGNVGAVLTQLLFFTGSSYSTETGISLMGVMIIACTLPVAFI  432 (476)
T ss_pred             hhhhcccCcccC-hhhchhhhhh-hhccccHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence            555666667765 4789999988 45555667777776544222  58888888877766655544433

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.98  E-value=1.5e-08  Score=84.08  Aligned_cols=116  Identities=13%  Similarity=0.086  Sum_probs=96.4

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhh--h--ccHHHHHHHHHHHhhhhhhHHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPF--S--KDVVLFSLSRFLTGVGHFNAFIF  140 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~l~g~~~~~~~~~  140 (208)
                      +..+.++......++..++.++.|++.||+|||+.+..+..+.+++..+...  .  .+.+.+....++.|++.+...+.
T Consensus       289 s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~  368 (485)
T TIGR00711       289 TALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMP  368 (485)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4567788888889999999999999999999999999999888888776652  1  34566667788899998888777


Q ss_pred             HHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh
Q psy2964         141 YYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA  181 (208)
Q Consensus       141 ~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~  181 (208)
                      ......+..|+++|+.+.++ .+....+|..+++.+.+.+.
T Consensus       369 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~g~~ig~~i~g~~~  408 (485)
T TIGR00711       369 LTTIALSGLPPHKIARGSSL-SNFTRQLGGSIGTALITTIL  408 (485)
T ss_pred             HHHHHHhcCCHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            77888888999999999999 67788899988888777664

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.97  E-value=2.9e-08  Score=79.93  Aligned_cols=148  Identities=11%  Similarity=0.073  Sum_probs=90.1

Q ss_pred             ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCch---HHHHH-HHHHHHHHHHHHhhhccHHHHHHHH
Q psy2964          52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRI---TAVLG-SHVVSFLGVALTPFSKDVVLFSLSR  127 (208)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr---~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~  127 (208)
                      .+++.++.++   +. ..+....+..+...++   .++++||..||   +.... ..++.++...+.+...+.......-
T Consensus       215 lp~~L~~~g~---s~-~~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  287 (368)
T TIGR00903       215 LEAALRPAGL---ED-IAGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFI  287 (368)
T ss_pred             HHHHHHHCCC---Ch-HHHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHH
Confidence            4555555443   22 2444444444444444   46777776543   33332 3333344333444444444444455


Q ss_pred             HHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHhccCC
Q psy2964         128 FLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA-DWQWISVITIFPLIVGLIVAIFTPE  206 (208)
Q Consensus       128 ~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~-~w~~~~~~~~~~~~~~~~~~~~~pe  206 (208)
                      .+.+++.....+..+++.+|.+|++.|+++.|+ .+....++...+|.+.+.+. +-+..|.+.+++.+++.+....+++
T Consensus       288 ~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~-~~~~g~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~  366 (368)
T TIGR00903       288 GIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGA-IGFTSRAISVALALAAMLFISSAEAYFTFLAILITIAFAIALLLPN  366 (368)
T ss_pred             HHHHHhhhhhHHHHHHHHHHhcchhhcCcccch-hhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            666776767777788999999999999999999 45566677877777776554 6667777777776665554444465


Q ss_pred             C
Q psy2964         207 S  207 (208)
Q Consensus       207 t  207 (208)
                      .
T Consensus       367 ~  367 (368)
T TIGR00903       367 D  367 (368)
T ss_pred             C
Confidence            4

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.96  E-value=1.5e-08  Score=83.40  Aligned_cols=142  Identities=13%  Similarity=0.120  Sum_probs=85.5

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHH---HHHHHHhh--hccHHHHHHHHHHHhhhhhhHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSF---LGVALTPF--SKDVVLFSLSRFLTGVGHFNAFI  139 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~l~g~~~~~~~~  139 (208)
                      +....++...++.++..++.+..|+++||+|+++....+.....   ++......  ..+.+......+..|++......
T Consensus       285 s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  364 (438)
T TIGR00712       285 ALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVM  364 (438)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHH
Confidence            45567777888889999999999999999965432222222211   11111111  12333333344445543322222


Q ss_pred             HHHHHHHhhcCCchhhhHHhHHHHHHHHHH-HHHHHHHHHhhh---hhHHHHHHHHHHHHH-HHHHHhccCCC
Q psy2964         140 FYYIIVLECVGPKWRTFAMTFPFLIFYTVS-EVALPWIAYYLA---DWQWISVITIFPLIV-GLIVAIFTPES  207 (208)
Q Consensus       140 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g-~~~~~~~~~~~~---~w~~~~~~~~~~~~~-~~~~~~~~pet  207 (208)
                      .......|.+|++.|++++|+ .+.....| ..++|.+.+.+.   +|...+++.+...++ ..+.++.+||.
T Consensus       365 ~~~~~~~~~~~~~~~g~~~g~-~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (438)
T TIGR00712       365 LIGLHALELAPKKAAGTAAGF-TGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGE  436 (438)
T ss_pred             HHHHHHHHhcChhheeeehhh-hchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            334567899999999999999 44444444 567888877765   678887776555544 44445556664

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.96  E-value=1.1e-08  Score=83.47  Aligned_cols=128  Identities=13%  Similarity=0.129  Sum_probs=83.1

Q ss_pred             CchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHH-HHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2964          66 SSNLAITRSIFFLGSLLGGFILSWVADRYGRITA-VLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYII  144 (208)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  144 (208)
                      ....+.......++..++.+..|+++||+|||+. +....+...++..+....++......+-.+.+++.....+..+..
T Consensus       278 ~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  357 (412)
T TIGR02332       278 NIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTT  357 (412)
T ss_pred             HHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhh
Confidence            3466777888999999999999999999997774 344443433333222222232222222222233332333445566


Q ss_pred             HHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHH
Q psy2964         145 VLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA----DWQWISVITIFPL  194 (208)
Q Consensus       145 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~~  194 (208)
                      ..|.+|+++|+.++|+ .+....+|..++|.+.+.+.    +|++.+++.++..
T Consensus       358 ~~~~~~~~~~~~a~g~-~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~  410 (412)
T TIGR02332       358 PDQSISLQARAIAIAV-INATGNIGSALSPFLIGILKDATGSFNSGLWFVAALL  410 (412)
T ss_pred             cccccchHHHHHHHHH-HHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHHH
Confidence            6788999999999999 56677789999998877764    5888777665543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10054 putative transporter; Provisional

Probab=98.95  E-value=2.7e-08  Score=80.85  Aligned_cols=138  Identities=9%  Similarity=0.024  Sum_probs=101.6

Q ss_pred             hHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q psy2964          68 NLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS-KDVVLFSLSRFLTGVGHFNAFIFYYIIVL  146 (208)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~  146 (208)
                      ..+.......+.....+++.|++.||+++|+.+..+..+..++....... ++.+.+.+...+.|++.+...|....++.
T Consensus       245 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~  324 (395)
T PRK10054        245 VVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLID  324 (395)
T ss_pred             HHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            44556666666666777888999999999999999988888777666654 56666777888999998887888889999


Q ss_pred             hhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHH-HHhccCCC
Q psy2964         147 ECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLI-VAIFTPES  207 (208)
Q Consensus       147 e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~-~~~~~pet  207 (208)
                      +..|++.|++..+. .+ ...+|..++|.+++.+.   +....|++.+....+..+ ...-+.|-
T Consensus       325 ~~~p~~~~~~~~~~-~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (395)
T PRK10054        325 HIAPPGMKASYFSA-QS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLMLKGMRAR  387 (395)
T ss_pred             HhCCcccceehHhH-HH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHhccccC
Confidence            99999999999876 44 44578999999998886   444555555444444333 23334443

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.95  E-value=5.2e-08  Score=78.85  Aligned_cols=148  Identities=9%  Similarity=-0.075  Sum_probs=95.3

Q ss_pred             ccceeecccccccCCchHHHH--HHHHHHHHHhHHHHH-HHhhhhhCchHHHHHHHHHHHH-HHHHHh-h--hcc-HHHH
Q psy2964          52 RRRRRRRDNWVCDGSSNLAIT--RSIFFLGSLLGGFIL-SWVADRYGRITAVLGSHVVSFL-GVALTP-F--SKD-VVLF  123 (208)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-g~l~dr~Grr~~l~~~~~~~~~-~~~~~~-~--~~~-~~~~  123 (208)
                      .+.+.++.++   +..+.+..  ..+..+...+.+++. ++..||+|||+..++...+... ...... .  ..+ ...+
T Consensus        24 lp~~l~~~g~---~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (390)
T TIGR02718        24 LPTLLREDGA---PLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWA  100 (390)
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHH
Confidence            4555566665   66778876  356677777777777 4478999999997666533222 222222 1  222 2233


Q ss_pred             HHHHHHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHH
Q psy2964         124 SLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIV  200 (208)
Q Consensus       124 ~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~  200 (208)
                      +...++.++..+...+....+..|..++++++...+. ...+..+|..+++...+++.   +||..|++.++..++..+.
T Consensus       101 ~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~-~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~  179 (390)
T TIGR02718       101 VGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAV-QIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVC  179 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence            3444555566666667777788888888888877766 56666778888876665543   8999999888776654443


Q ss_pred             Hhc
Q psy2964         201 AIF  203 (208)
Q Consensus       201 ~~~  203 (208)
                      .++
T Consensus       180 ~~~  182 (390)
T TIGR02718       180 VLW  182 (390)
T ss_pred             HHH
Confidence            333

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.95  E-value=1.3e-07  Score=76.83  Aligned_cols=140  Identities=13%  Similarity=0.082  Sum_probs=104.9

Q ss_pred             hHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh-ccHHHHHH----HHHHHhhhhhhHHHHHH
Q psy2964          68 NLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS-KDVVLFSL----SRFLTGVGHFNAFIFYY  142 (208)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~l~g~~~~~~~~~~~  142 (208)
                      ..+...++..++=++.-...+++..|+|.|+++.++.+..++=..+++.. ++.+....    ...+.|+..+.......
T Consensus       244 ~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~  323 (400)
T PF03825_consen  244 TIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASV  323 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            44555556566667777889999999999999999999999988887776 45444333    34569999999999999


Q ss_pred             HHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---------hhHHHHHHHHHHHHH-HHHHHhccCCC
Q psy2964         143 IIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---------DWQWISVITIFPLIV-GLIVAIFTPES  207 (208)
Q Consensus       143 ~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---------~w~~~~~~~~~~~~~-~~~~~~~~pet  207 (208)
                      .|+.+..|++.|+++.++......++|..+|..++|++.         .|...+.+.++..++ ..+.+++.+|+
T Consensus       324 ~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~  398 (400)
T PF03825_consen  324 RYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK  398 (400)
T ss_pred             HHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            999999999999999999666778899999999999885         233444455544444 33334444443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.94  E-value=1.6e-08  Score=80.68  Aligned_cols=120  Identities=15%  Similarity=0.205  Sum_probs=82.0

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCc-hHH-HHHHHHH-HHHHHHHHhh--hccHHHHHHHHHHHhhhhhhHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGR-ITA-VLGSHVV-SFLGVALTPF--SKDVVLFSLSRFLTGVGHFNAFI  139 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr-r~~-l~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~l~g~~~~~~~~  139 (208)
                      +..+.+...+.+.++..++.++.+++.||+++ |+. +...... ..++......  ..+........++.|+......+
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  329 (379)
T TIGR00881       250 SKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQM  329 (379)
T ss_pred             CHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhH
Confidence            45667888888999999999999999998643 332 2221111 1122222222  23444455566677765555556


Q ss_pred             HHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHH
Q psy2964         140 FYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQW  185 (208)
Q Consensus       140 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~  185 (208)
                      ....+..|..|++.|+++.++ .+....+|..++|.+.+.+.   ||++
T Consensus       330 ~~~~~~~~~~~~~~~g~~~g~-~~~~~~~g~~~~~~~~g~l~~~~g~~~  377 (379)
T TIGR00881       330 LIGVIASELAPKKAAGTAAGF-VGFFAYLGGILAGLPLGYLADGFGWAG  377 (379)
T ss_pred             HHHHHHHHhcCcchhHHHHHH-HHHhhhhhhhhhhhhHHHHHHhhcccc
Confidence            667889999999999999999 67778889889988888775   5554

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.94  E-value=8.7e-08  Score=77.83  Aligned_cols=137  Identities=11%  Similarity=0.090  Sum_probs=97.1

Q ss_pred             eeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhh
Q psy2964          55 RRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGH  134 (208)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~  134 (208)
                      +.+++++   +....+.....+.++..++.++.+++.||.+++..+....+.......+....++.+.+....++.|++.
T Consensus       243 ~~~~~g~---s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~  319 (394)
T PRK10213        243 YMNLAGF---GVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTF  319 (394)
T ss_pred             HHHhcCC---ChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            3344555   4556788888889999999999999999965544444333333333444445566777777888899998


Q ss_pred             hhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHH
Q psy2964         135 FNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIV  196 (208)
Q Consensus       135 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~  196 (208)
                      +...+...+++.+..| +++++..+. ......+|..+||.+++.+.   |++..++..++..++
T Consensus       320 ~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~  382 (394)
T PRK10213        320 ALVPVGWSTWITRSLA-DQAEKAGSI-QVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLL  382 (394)
T ss_pred             HhhhHHHHHHHHHHCc-ccHHHHHHH-HHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHH
Confidence            8888888888998887 445566666 45577789999999999886   666666666554433

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.94  E-value=8e-08  Score=78.17  Aligned_cols=115  Identities=10%  Similarity=-0.026  Sum_probs=88.0

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh-----ccHHHHHHHHHHHhhhhhhHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS-----KDVVLFSLSRFLTGVGHFNAFI  139 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~~~~~~~~  139 (208)
                      +..+.++......++..++.++.++++||+|+|+.+..+.++..++..+....     ++.+.+....++.|++.+...+
T Consensus       249 ~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~  328 (406)
T PRK15402        249 SSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANA  328 (406)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhh
Confidence            44556666666777888999999999999999999998888777766655442     3456666778888888887766


Q ss_pred             HHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh
Q psy2964         140 FYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA  181 (208)
Q Consensus       140 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~  181 (208)
                      ......... ++++|++..+. .+....++..+++.+.+.+.
T Consensus       329 ~~~~~~~~~-~~~~~g~~~~~-~~~~~~~~~~~g~~~~~~l~  368 (406)
T PRK15402        329 GLYRLTLFS-SDVSKGTVSAA-MGMLSMLIFTVGIELSKHAY  368 (406)
T ss_pred             hHHHHHhhh-ccccccHHHHH-HHHHHHHHHHHHHHHHHhcc
Confidence            666655444 45889999998 67778888889988888875

>TIGR00901 2A0125 AmpG-related permease

Probab=98.93  E-value=1.1e-08  Score=81.59  Aligned_cols=96  Identities=20%  Similarity=0.218  Sum_probs=78.3

Q ss_pred             CCchHHHHHHHHH-HHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh-----------ccHHHHHHHHHHHhh
Q psy2964          65 GSSNLAITRSIFF-LGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS-----------KDVVLFSLSRFLTGV  132 (208)
Q Consensus        65 ~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~g~  132 (208)
                      +..+.+....+.. ++..++.+++|++.||+|||+.+..+.++.++...+....           ++.+.+..+.++.++
T Consensus       242 ~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  321 (356)
T TIGR00901       242 SKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAV  321 (356)
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHH
Confidence            4555666665554 5778999999999999999999998888887766654442           345667777888899


Q ss_pred             hhhhHHHHHHHHHHhhcCCchhhhHHhH
Q psy2964         133 GHFNAFIFYYIIVLECVGPKWRTFAMTF  160 (208)
Q Consensus       133 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~  160 (208)
                      +.+...+...+++.|.+|+++|++.+++
T Consensus       322 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~  349 (356)
T TIGR00901       322 TGGLGTVAFVAFLSKLSNPKFGATQMAL  349 (356)
T ss_pred             HhHHHHHHHHHHHHHhcCCCccHHHHHH
Confidence            9999999999999999999999999998

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.92  E-value=2.7e-08  Score=83.19  Aligned_cols=115  Identities=14%  Similarity=0.004  Sum_probs=95.3

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh---ccHHHHHHHHHHHhhhhhhHHHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS---KDVVLFSLSRFLTGVGHFNAFIFY  141 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~  141 (208)
                      +..+.+.....+.++..++.++.|++.||+|+|+.+..+.++..++..+....   ++.+......++.|++.+...+..
T Consensus       293 s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~  372 (495)
T PRK14995        293 SPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLAS  372 (495)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHH
Confidence            55677888888889999999999999999999999998888877776554432   355556677889999999988888


Q ss_pred             HHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhh
Q psy2964         142 YIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL  180 (208)
Q Consensus       142 ~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~  180 (208)
                      ...+.+..|+++++.+.++ ++....+|..+|+.+.+.+
T Consensus       373 ~~~~~~~~~~~~~g~~~~~-~~~~~~lG~~~G~ai~g~i  410 (495)
T PRK14995        373 TSAIMAAAPPEKAAAAGAI-ETMAYELGAGLGIAIFGLL  410 (495)
T ss_pred             HHHHHhcCCHHhcchHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999988 7778888888887776665

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.92  E-value=9.7e-08  Score=77.68  Aligned_cols=133  Identities=13%  Similarity=0.141  Sum_probs=84.3

Q ss_pred             CCchHHHHHHHHH-HHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHH---hhh-ccHHHHHHHHH----HHhhhhh
Q psy2964          65 GSSNLAITRSIFF-LGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALT---PFS-KDVVLFSLSRF----LTGVGHF  135 (208)
Q Consensus        65 ~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~----l~g~~~~  135 (208)
                      +....++...... ++..++.++.+++.||+|||+.+..+..+..+.....   +.. ++.+.+....+    ..|++.+
T Consensus       243 ~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  322 (402)
T PRK11902        243 SAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTA  322 (402)
T ss_pred             CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHH
Confidence            4555666665544 4678999999999999999998887777665554332   333 35555554443    4445555


Q ss_pred             hHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHh
Q psy2964         136 NAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIVAI  202 (208)
Q Consensus       136 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~  202 (208)
                      ...+....++.+.+|.+.++    + .+....++...++.+++.+.   ||+..|.+.+++.+++++...
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~----~-~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~  387 (402)
T PRK11902        323 AFVALLMALCNRSFSATQYA----L-LSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLW  387 (402)
T ss_pred             HHHHHHHHhcCCCCcHHHHH----H-HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence            55666666777777765554    3 23333455554444555554   899989888777766555443

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.92  E-value=1.2e-07  Score=74.60  Aligned_cols=149  Identities=21%  Similarity=0.182  Sum_probs=97.5

Q ss_pred             eeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhh
Q psy2964          55 RRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGH  134 (208)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~  134 (208)
                      +.+++++   +..+++.+.....+..++...+.|.++||+|||+..+..+++..++++ +-..++++.++++|++.|++.
T Consensus        60 LY~~yg~---~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaT  135 (354)
T PF05631_consen   60 LYESYGF---SEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIAT  135 (354)
T ss_pred             HHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHH
Confidence            3345666   667788888888888899999999999999999999999999988875 555688999999999999999


Q ss_pred             hhHHHHHHHHHH-hh----cCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHHH-HHHhc
Q psy2964         135 FNAFIFYYIIVL-EC----VGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA-----DWQWISVITIFPLIVGL-IVAIF  203 (208)
Q Consensus       135 ~~~~~~~~~~~~-e~----~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~w~~~~~~~~~~~~~~~-~~~~~  203 (208)
                      +..+..--++.. |-    +|.+..+.-.+.+......+-.+.+..++.++.     +-..+|.....+..++. ++...
T Consensus       136 SLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~  215 (354)
T PF05631_consen  136 SLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKT  215 (354)
T ss_pred             HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhc
Confidence            998877666653 32    222222222221100111222233334444433     23567777666555533 34444


Q ss_pred             cCCC
Q psy2964         204 TPES  207 (208)
Q Consensus       204 ~pet  207 (208)
                      .+|.
T Consensus       216 W~EN  219 (354)
T PF05631_consen  216 WPEN  219 (354)
T ss_pred             cccc
Confidence            5553

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.91  E-value=4.2e-08  Score=79.83  Aligned_cols=116  Identities=11%  Similarity=-0.055  Sum_probs=90.9

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhh-hhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVAD-RYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYI  143 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~  143 (208)
                      ++...++..++..++...+..+.+++.| |++.++.+..+..+.+++..+.+..++++.+.....+.+.+.+...+...+
T Consensus       241 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~  320 (400)
T PRK11646        241 SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARET  320 (400)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHH
Confidence            3455667666666666656666666665 566677777888777777777777777777777777888888877788889


Q ss_pred             HHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh
Q psy2964         144 IVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA  181 (208)
Q Consensus       144 ~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~  181 (208)
                      ++.+..|+++|++++|+ .+....+|..++|.+++.+.
T Consensus       321 ~~~~~~p~~~~g~~~g~-~~~~~~~g~~ig~~l~G~l~  357 (400)
T PRK11646        321 LSASLADARARGSYMGF-SRLGLALGGAIGYIGGGWLF  357 (400)
T ss_pred             HHHhcCCcccchhhhhH-HHHHHHHHHHhcccchHHHH
Confidence            99999999999999999 78888899999999998875

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.91  E-value=2e-08  Score=80.21  Aligned_cols=132  Identities=17%  Similarity=0.209  Sum_probs=97.6

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhh--CchHHH-HHHHHHHHHHHHHHhhhc--cHHHHHHHHHHHhhhhhhHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRY--GRITAV-LGSHVVSFLGVALTPFSK--DVVLFSLSRFLTGVGHFNAFI  139 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Grr~~l-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~  139 (208)
                      +....++..+.+-++...|++++|+++||+  |||... ++.++...++....-..+  |++...++.++.|+..-+...
T Consensus       286 s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqm  365 (448)
T COG2271         286 SLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQM  365 (448)
T ss_pred             CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHH
Confidence            566788999999999999999999999987  566544 444444444444444444  557788888999988877777


Q ss_pred             HHHHHHHhhcCCchhhhHHhHHHHHHHHH-HHHHHHHHHHhhh---hhHHHHHHHHHHHHHH
Q psy2964         140 FYYIIVLECVGPKWRTFAMTFPFLIFYTV-SEVALPWIAYYLA---DWQWISVITIFPLIVG  197 (208)
Q Consensus       140 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~~-g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~  197 (208)
                      .......|..|++--+++.|+ ...+..+ |...+....+++.   ||...|++..+.++++
T Consensus       366 LiGl~a~e~~pK~AaGtA~Gf-~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~  426 (448)
T COG2271         366 LIGLAAAEFVPKKAAGTATGF-VGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLA  426 (448)
T ss_pred             HHHHHHhccccHhhccchhch-hhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHH
Confidence            888888999999999999999 4544444 6666655555553   8988888766655553

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.91  E-value=7.7e-08  Score=77.73  Aligned_cols=129  Identities=11%  Similarity=0.159  Sum_probs=89.5

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhh-hccHHHHHHHHHHHhhhhhhHHHHHH-
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPF-SKDVVLFSLSRFLTGVGHFNAFIFYY-  142 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~-  142 (208)
                      +....+...+...++..++.++.+++.||+|+|+.+..+..+..++.++... .++.+...+..++.+++.....+... 
T Consensus       233 s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  312 (382)
T PRK10091        233 SETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAPLQI  312 (382)
T ss_pred             CHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            5567888889999999999999999999999999999888887777655543 34555555555555555444334333 


Q ss_pred             HHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHH
Q psy2964         143 IIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA----DWQWISVITIFPLIV  196 (208)
Q Consensus       143 ~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~~~~  196 (208)
                      ....+..+++.++.+.   ......+|..++|.+++.+.    +|++.+.+.++...+
T Consensus       313 ~~~~~~~~~~~~~~~~---~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~  367 (382)
T PRK10091        313 LLLQNAKGGELLGAAG---GQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFA  367 (382)
T ss_pred             HHHHhCCcchHHHHHH---HHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHH
Confidence            3344444555555443   24466789999999988764    577777776555444

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.91  E-value=3.1e-08  Score=90.54  Aligned_cols=127  Identities=13%  Similarity=0.081  Sum_probs=99.7

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh--------------------ccHHHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS--------------------KDVVLFS  124 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--------------------~~~~~~~  124 (208)
                      +....+++.+.+.++..++.++.|+++|+.++++.+..+.++.+++.+...+.                    .+.+.+.
T Consensus       259 ~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (1140)
T PRK06814        259 DENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRIL  338 (1140)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHH
Confidence            56678899999999999999999999998887776666666655554433332                    5667777


Q ss_pred             HHHHHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHH
Q psy2964         125 LSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA----DWQWISVITIF  192 (208)
Q Consensus       125 ~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~  192 (208)
                      +..++.|++.+...+...+++.+..|++.|++++|. .+....++..+++.+.+.+.    ++...+++.++
T Consensus       339 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~-~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~  409 (1140)
T PRK06814        339 IDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAA-NNVLNAAFMVAGTIILALLQALGFSIPWIILFIAL  409 (1140)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHH-HHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            888889999999889999999999999999999999 67778888888888877764    34444444443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.90  E-value=1.1e-07  Score=76.40  Aligned_cols=116  Identities=7%  Similarity=-0.080  Sum_probs=79.6

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHh---hh-ccHHHHHHHHHHHhhhhhhHHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTP---FS-KDVVLFSLSRFLTGVGHFNAFIF  140 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~l~g~~~~~~~~~  140 (208)
                      +..+.++...+..++..++.++.+++.||+|||+.+..+..+..+......   .. .+.+...+...+.+.+.+.....
T Consensus       228 s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (377)
T PRK11102        228 SPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMISSN  307 (377)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Confidence            556778888899999999999999999999999998888776544333222   22 23444444444444444444455


Q ss_pred             HHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh
Q psy2964         141 YYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA  181 (208)
Q Consensus       141 ~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~  181 (208)
                      ...++.|..| ++|+.+.++.......+|..+++.++....
T Consensus       308 ~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~~~~  347 (377)
T PRK11102        308 AMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSLAPF  347 (377)
T ss_pred             HHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            5666777766 789999888555556677777777765443

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.89  E-value=9.8e-08  Score=77.52  Aligned_cols=127  Identities=8%  Similarity=-0.106  Sum_probs=95.5

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYII  144 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  144 (208)
                      +..+.++..+...++..++++..+++.||.++|+.+..+.. .++...+..+.++++......++.|++.+...+...+.
T Consensus       239 s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~~~  317 (393)
T PRK11195        239 TLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQHSLLPAYPLLILIGALGGFFVVPMNAL  317 (393)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence            56678899999999999999999999999999988887753 34444445556666666677778899888877888888


Q ss_pred             HHhhcCCch-hhhHHhHHHHHHHHHHHHHHHHHHHhhh--h--hHHHHHHHHHH
Q psy2964         145 VLECVGPKW-RTFAMTFPFLIFYTVSEVALPWIAYYLA--D--WQWISVITIFP  193 (208)
Q Consensus       145 ~~e~~~~~~-r~~~~~~~~~~~~~~g~~~~~~~~~~~~--~--w~~~~~~~~~~  193 (208)
                      +.+..|++. ++++.++ .+....++..++..+.+.+.  +  +...+...+.+
T Consensus       318 ~q~~~~~~~~~g~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (393)
T PRK11195        318 LQHRGHVLVGAGHSIAV-QNFNENLAMLLMLGLYSLLVKLGVPVVAVIVGFGLL  370 (393)
T ss_pred             HHhhCcccccchhHHHH-HhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            888766654 7889888 67788888888877777664  3  33444444444

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.89  E-value=2e-07  Score=71.52  Aligned_cols=127  Identities=20%  Similarity=0.294  Sum_probs=99.7

Q ss_pred             chHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhcc--HHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2964          67 SNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKD--VVLFSLSRFLTGVGHFNAFIFYYII  144 (208)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~g~~~~~~~~~~~~~  144 (208)
                      ...++..+.+.++..++.++.|.++||+|||+.+..+.....++.+...+..+  .+.+.+.|+..|++.+...+....+
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  118 (338)
T COG0477          39 LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASAL  118 (338)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            35788889999999999999999999999998888888765555555566555  8888899999999999889999999


Q ss_pred             HHhhcCC-chhhhHHhHHHHH-HHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHH
Q psy2964         145 VLECVGP-KWRTFAMTFPFLI-FYTVSEVALPWIAYYLA-----DWQWISVITIFPL  194 (208)
Q Consensus       145 ~~e~~~~-~~r~~~~~~~~~~-~~~~g~~~~~~~~~~~~-----~w~~~~~~~~~~~  194 (208)
                      +.|..|. +.|+...+. ... ...+|..++|.+++.+.     +|++.+.......
T Consensus       119 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (338)
T COG0477         119 LSEWFPEATERGLAVGL-VTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLG  174 (338)
T ss_pred             HHHhcCchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            9999988 678888777 344 46677777776665553     6888666554443

>KOG2504|consensus

Probab=98.86  E-value=1.7e-08  Score=84.20  Aligned_cols=149  Identities=18%  Similarity=0.205  Sum_probs=126.3

Q ss_pred             cceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhC--chHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHH
Q psy2964          53 RRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYG--RITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLT  130 (208)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  130 (208)
                      +....+.++   ++.+.+...++..+...++.++.|+++|+..  ++.+..++.+..+++.+...+.++++.+...-.+.
T Consensus       322 ~~~~~~~g~---~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~f  398 (509)
T KOG2504|consen  322 PSYAKSLGL---SSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILF  398 (509)
T ss_pred             HHHHhhcCC---ChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            344445554   6778889999999999999999999999988  56677788888888888889999999999999999


Q ss_pred             hhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHhccC
Q psy2964         131 GVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA----DWQWISVITIFPLIVGLIVAIFTP  205 (208)
Q Consensus       131 g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~~p  205 (208)
                      |++.|.........+.|..+.++-..+.|+ .....+++..++|.+++++.    +|...|+.++++.+++..+++..|
T Consensus       399 G~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl-~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  399 GFCVGSFSSLTPVILVDLVGLEKLSNAYGL-LLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHcChhhcchHHHH-HHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            999999988888899999999999999999 67788999999999999775    588888888887777666555443

>TIGR01272 gluP glucose/galactose transporter

Probab=98.86  E-value=2.3e-07  Score=73.05  Aligned_cols=121  Identities=15%  Similarity=0.092  Sum_probs=92.0

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYII  144 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  144 (208)
                      +..+.+...+.+..+.++|.+..+++.||+|+|+.+..+..+..++..+....++... ....++.|++.+..+|...+.
T Consensus       176 s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P~~~s~  254 (310)
T TIGR01272       176 PEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMFPTIFSL  254 (310)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            5667888899999999999999999999999999998888877777655555554332 345668899999999999999


Q ss_pred             HHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHH
Q psy2964         145 VLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVI  189 (208)
Q Consensus       145 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~  189 (208)
                      ..+..|++ .+++.++ .. ...+|..+.|.+.+.+.   +.+..+++
T Consensus       255 a~~~~~~~-~~~asai-~~-~~~~Gg~i~P~l~G~lad~~g~~~a~~v  299 (310)
T TIGR01272       255 ALNALGRH-TSQGSGI-LC-LAIVGGAIVPLLQGSLADCLGIQLAFAL  299 (310)
T ss_pred             HHhhhhhh-hhhhHHH-HH-HHHhcchHHHHHHHHHHHhccchHHHHH
Confidence            98888754 3455555 43 45578888998777764   54555553

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.85  E-value=2e-07  Score=74.70  Aligned_cols=141  Identities=14%  Similarity=0.155  Sum_probs=106.9

Q ss_pred             eeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhc-cHHHHHHHHHHHhhh
Q psy2964          55 RRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSK-DVVLFSLSRFLTGVG  133 (208)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~  133 (208)
                      +.+..++   +....++...+|.++..+|..+.|++.|| +.|+.+.....+..+......+.. +.+.....-++.|+.
T Consensus       238 L~~v~g~---s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a  313 (394)
T COG2814         238 LESVAGF---SVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFA  313 (394)
T ss_pred             HHHccCC---CHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            3344455   67789999999999999999999999999 999999998888888777666654 455555556666666


Q ss_pred             hhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHH
Q psy2964         134 HFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIVA  201 (208)
Q Consensus       134 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~  201 (208)
                      ............++ ..++.+..+.++ +...+++|..+|..+++.+.   ++....++.++..+.++...
T Consensus       314 ~~~~~~~~~~~~a~-~~p~~~~~a~sl-~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~  382 (394)
T COG2814         314 FSPALQGLQTRLAR-LAPDAADLAGSL-NVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLA  382 (394)
T ss_pred             hhhhhhHHHHHhcc-cCCCchHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Confidence            66555555555555 447889999999 77788999999999998876   67777777777766655443

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.85  E-value=1.8e-07  Score=70.96  Aligned_cols=125  Identities=18%  Similarity=0.204  Sum_probs=92.1

Q ss_pred             cccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh-------ccHHHH
Q psy2964          51 RRRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS-------KDVVLF  123 (208)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-------~~~~~~  123 (208)
                      .-+.+.+.+++   ++.+...+...-.+|..+| ++.|.+.|++|++.++.++.+...++..+...+       .++|.+
T Consensus        24 yS~~Lk~~l~~---sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~   99 (250)
T PF06813_consen   24 YSPQLKSRLGY---SQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLM   99 (250)
T ss_pred             hhHHHHHHhCC---CHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHH
Confidence            34556666776   6777888888888888764 889999999999999999999999998776653       356777


Q ss_pred             HHHHHHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHH-HHHHHHhhh
Q psy2964         124 SLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVA-LPWIAYYLA  181 (208)
Q Consensus       124 ~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~-~~~~~~~~~  181 (208)
                      .+..++.|.+.+...........+.+| ++||++.|+.- ...+++..+ ..+...+..
T Consensus       100 ~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk-~~~GLSaai~t~i~~~~f~  156 (250)
T PF06813_consen  100 CLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILK-GFFGLSAAIFTQIYSAFFG  156 (250)
T ss_pred             HHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhh-HHHHhHHHHHHHHHHHHcC
Confidence            777778888777666666666678887 57999999944 455555544 344444443

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.85  E-value=1.7e-08  Score=82.22  Aligned_cols=138  Identities=18%  Similarity=0.146  Sum_probs=107.4

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhh-CchHHHHHHHHHHHHHHHHHhhhc--cHHHHHHHHHHHhhhhhhHHHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRY-GRITAVLGSHVVSFLGVALTPFSK--DVVLFSLSRFLTGVGHFNAFIFY  141 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~  141 (208)
                      ++....-+.+.|..-.-+.++++||++||+ |+|++++.+.+++.+++++.+...  +...+.++-.+.++|.|..=+..
T Consensus        59 ~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~Ni  138 (498)
T COG3104          59 DETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNI  138 (498)
T ss_pred             ChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccH
Confidence            344455555666666667889999999975 999999999999999999988874  77788888888889999998999


Q ss_pred             HHHHHhhcCCch--hhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHhc
Q psy2964         142 YIIVLECVGPKW--RTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIVAIF  203 (208)
Q Consensus       142 ~~~~~e~~~~~~--r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~  203 (208)
                      .+++.|.+|++.  |-.+.++ +-.+.++|..++|.+.+++.   +|...|...++-...+++....
T Consensus       139 S~llg~ly~~~DprrD~gFt~-fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~  204 (498)
T COG3104         139 SSLLGELYPKDDPRRDGGFTL-FYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLL  204 (498)
T ss_pred             HHHHHHhcCCCCcccCCCccE-EEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999996433  4455555 33466788999999988886   8888888776665555554443

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.83  E-value=5.6e-08  Score=76.98  Aligned_cols=115  Identities=22%  Similarity=0.339  Sum_probs=93.9

Q ss_pred             eecccccccC-CchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh---ccHHHHHHHHHHHh
Q psy2964          56 RRRDNWVCDG-SSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS---KDVVLFSLSRFLTG  131 (208)
Q Consensus        56 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~g  131 (208)
                      .+.+++   + ....+...++..++..++.++.|++.||+|+|+.+........+........   ++........++.|
T Consensus       234 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  310 (352)
T PF07690_consen  234 QEVLGF---SGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIG  310 (352)
T ss_dssp             CHHHHC---CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHH
T ss_pred             hhccCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            455565   3 3567777888899999999999999999999888888777777766655544   34566667788899


Q ss_pred             hhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHH
Q psy2964         132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALP  174 (208)
Q Consensus       132 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~  174 (208)
                      ++.+...+....++.|..|+++|+++.|+ .+....+|..++|
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~~~~~igP  352 (352)
T PF07690_consen  311 FGFGIVFPILFSLIQELVPPEYRGTAFGL-FNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHCHHHHHHHHCCCHTCHHHHHHHH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHHHHHHHCC
Confidence            99999999999999999999999999999 6778888888876

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>KOG0254|consensus

Probab=98.82  E-value=1.6e-07  Score=78.87  Aligned_cols=138  Identities=14%  Similarity=0.106  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhcc-------------HHH-HHHHHHHHhhhhh
Q psy2964          70 AITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKD-------------VVL-FSLSRFLTGVGHF  135 (208)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~-------------~~~-~~~~~~l~g~~~~  135 (208)
                      .+...+..+...++..++..+.||+|||+.++.+...+.++.++.+....             ... ...+-++..+..+
T Consensus       332 ~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g  411 (513)
T KOG0254|consen  332 FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIG  411 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcc
Confidence            55556666777888888899999999999999999999999887765411             111 1122233333333


Q ss_pred             hHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHH-HHHHHHHH-HHHhccCCCC
Q psy2964         136 NAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLAD--WQWISVIT-IFPLIVGL-IVAIFTPESA  208 (208)
Q Consensus       136 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~--w~~~~~~~-~~~~~~~~-~~~~~~petp  208 (208)
                      . .+..+.+.+|.+|.+.|+.+.++.....+.....+.-........  +...|... ++..+... +.++++|||.
T Consensus       412 ~-g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETk  487 (513)
T KOG0254|consen  412 W-GPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETK  487 (513)
T ss_pred             c-ccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCC
Confidence            3 477788999999999999999997776666666664443333332  23445444 34444444 5778899984

>PRK09669 putative symporter YagG; Provisional

Probab=98.80  E-value=9.3e-08  Score=78.82  Aligned_cols=138  Identities=10%  Similarity=0.053  Sum_probs=90.0

Q ss_pred             ecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhh----hCch-HHHHHHHHHHHHHHHHHhhhcc------HHHHHH
Q psy2964          57 RRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADR----YGRI-TAVLGSHVVSFLGVALTPFSKD------VVLFSL  125 (208)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~Grr-~~l~~~~~~~~~~~~~~~~~~~------~~~~~~  125 (208)
                      +.+++   +....+.+..+..+.-.+..++.|+++||    +||| +.++.+....+++..+....++      ...+.+
T Consensus        38 ~~~gl---s~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~  114 (444)
T PRK09669         38 DVFGL---SAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACV  114 (444)
T ss_pred             HhcCC---CHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHH
Confidence            45566   67788999999999999999999999998    7884 5555666666666554444432      233444


Q ss_pred             HHHHHhhhhhhHHHHHHHHHHhhc-CCchhhhHHhHHHHHHHHHHHHHHHHH----HHhh------hhhHHHHHHHHHHH
Q psy2964         126 SRFLTGVGHFNAFIFYYIIVLECV-GPKWRTFAMTFPFLIFYTVSEVALPWI----AYYL------ADWQWISVITIFPL  194 (208)
Q Consensus       126 ~~~l~g~~~~~~~~~~~~~~~e~~-~~~~r~~~~~~~~~~~~~~g~~~~~~~----~~~~------~~w~~~~~~~~~~~  194 (208)
                      .-.+.+.+.........++.+|+. ++++|.+..+. ......+|..+++.+    ...+      .+|+..+.+.+++.
T Consensus       115 ~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~-r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~  193 (444)
T PRK09669        115 TYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSW-RFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLG  193 (444)
T ss_pred             HHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHH
Confidence            445556555566667778999987 56888877666 444445555554432    2222      15776776666665


Q ss_pred             HHHH
Q psy2964         195 IVGL  198 (208)
Q Consensus       195 ~~~~  198 (208)
                      .+..
T Consensus       194 ~v~~  197 (444)
T PRK09669        194 VVLF  197 (444)
T ss_pred             HHHH
Confidence            5533

>TIGR00896 CynX cyanate transporter

Probab=98.80  E-value=1.3e-07  Score=75.54  Aligned_cols=124  Identities=11%  Similarity=0.028  Sum_probs=88.8

Q ss_pred             cceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhh-CchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHh
Q psy2964          53 RRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRY-GRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTG  131 (208)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  131 (208)
                      +.+.++.++   +....+...+++.++.++++++.|++.||+ +||+.+..+..+..++.....+.++..... ...+.|
T Consensus       221 p~~~~~~g~---~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g  296 (355)
T TIGR00896       221 PAILISHGA---SAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLG  296 (355)
T ss_pred             HHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHH
Confidence            334444454   556788889999999999999999999999 567777777777777766565554332222 346778


Q ss_pred             hhhhhHHHHHHHHHHhhc-CCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh
Q psy2964         132 VGHFNAFIFYYIIVLECV-GPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA  181 (208)
Q Consensus       132 ~~~~~~~~~~~~~~~e~~-~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~  181 (208)
                      ++.+...+.....+.+.. ++++++...++ .+....++..++|.+.+.+.
T Consensus       297 ~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~gp~~~G~l~  346 (355)
T TIGR00896       297 LGQGGAFPLALTLIGLRSRQAAQAAALSAM-AQSIGYLLAALGPLFVGVLH  346 (355)
T ss_pred             HhhhhHhHHHHHHHHHhccCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            888888887777776555 45667888777 45566677788888888775

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>KOG2816|consensus

Probab=98.77  E-value=1.7e-07  Score=77.30  Aligned_cols=129  Identities=21%  Similarity=0.178  Sum_probs=96.8

Q ss_pred             HHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCchh
Q psy2964          75 IFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWR  154 (208)
Q Consensus        75 ~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r  154 (208)
                      ...+...+.++..|.++||||||..+.+......+......+.. +|.++ .--+.|.. +..+....++++|....++|
T Consensus        70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~-~~~l~g~~-~~~~s~~~a~vadis~~~~R  146 (463)
T KOG2816|consen   70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL-LLGLSGGF-SAIFSVGFAYVADISSEEER  146 (463)
T ss_pred             hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh-hcccccch-hhhhhhhhhheeeccchhHH
Confidence            34567788899999999999999999999988888777666654 33333 22222322 34457888999999999999


Q ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHH-HHHHHhccCCC
Q psy2964         155 TFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIV-GLIVAIFTPES  207 (208)
Q Consensus       155 ~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~-~~~~~~~~pet  207 (208)
                      ....++ .+..+..+..++|.+++.+.   +.-..+.+..+..+. .....+++||+
T Consensus       147 ~~~~gl-l~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Es  202 (463)
T KOG2816|consen  147 SSSIGL-LSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPES  202 (463)
T ss_pred             HHHHHH-HHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccc
Confidence            999999 67678889999999999876   445566676666665 44566778886

>PRK09848 glucuronide transporter; Provisional

Probab=98.76  E-value=1.1e-06  Score=72.58  Aligned_cols=106  Identities=9%  Similarity=0.125  Sum_probs=83.7

Q ss_pred             HHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhc--cHHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCC
Q psy2964          74 SIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSK--DVVLFSLSRFLTGVGHFNAFIFYYIIVLECVGP  151 (208)
Q Consensus        74 ~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~  151 (208)
                      ....++.+++.++.+++.||+|+|+.+.++.++..++..+..+.+  +.+.+.+..++.|++.+...+...+..+|..|.
T Consensus       271 ~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~  350 (448)
T PRK09848        271 VQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEY  350 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            333566788999999999999999999999988888776665543  566666677888999999999999999998865


Q ss_pred             c-------hhhhHHhHHHHHHHHHHHHHHHHHHHhh
Q psy2964         152 K-------WRTFAMTFPFLIFYTVSEVALPWIAYYL  180 (208)
Q Consensus       152 ~-------~r~~~~~~~~~~~~~~g~~~~~~~~~~~  180 (208)
                      +       .++...|+ ++....+|..+++.+.+.+
T Consensus       351 ~~~~~g~r~~G~~~~~-~~~~~klg~aig~~i~g~~  385 (448)
T PRK09848        351 GEYLTGVRIEGLTYSL-FSFTRKCGQAIGGSIPAFI  385 (448)
T ss_pred             hHHhhCccchhHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            4       35777777 7777888888887776654

>PRK10133 L-fucose transporter; Provisional

Probab=98.76  E-value=4.9e-07  Score=74.51  Aligned_cols=125  Identities=8%  Similarity=0.120  Sum_probs=92.3

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYII  144 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  144 (208)
                      +....++....+.++..++.++.+++.||+|||+++..+.++..+...+..+.++. .......+.|++.+..+|.....
T Consensus       293 s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~glg~~~i~P~~~s~  371 (438)
T PRK10133        293 TAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGH-VGLIALTLCSAFMSIQYPTIFSL  371 (438)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            56778888999999999999999999999999999988887777666655555543 23456678999999999999999


Q ss_pred             HHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---h-hHHHHHHHHHH
Q psy2964         145 VLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---D-WQWISVITIFP  193 (208)
Q Consensus       145 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-w~~~~~~~~~~  193 (208)
                      ..+..|++ .+.+.++ .. ....|..++|.+.+.+.   | -+..|++..+.
T Consensus       372 a~~~~~~~-~~~as~l-~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~  421 (438)
T PRK10133        372 GIKNLGQD-TKYGSSF-IV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALC  421 (438)
T ss_pred             HHcccchh-hccchhH-Hh-HHhccchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            99988653 5566666 33 33356666666666654   3 45555544333

>KOG3762|consensus

Probab=98.71  E-value=9e-08  Score=78.59  Aligned_cols=130  Identities=12%  Similarity=0.067  Sum_probs=110.3

Q ss_pred             chHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q psy2964          67 SNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIVL  146 (208)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~  146 (208)
                      ..-|........+-++.-++.+++.+|+|+-+++..++.+.++=.+.....+|+|..+...+++|+..+..+.+..+|++
T Consensus       406 ~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s  485 (618)
T KOG3762|consen  406 TLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYAS  485 (618)
T ss_pred             eeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445555666777888899999999999999999999999888899999999999999999999999999999999


Q ss_pred             hhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHH
Q psy2964         147 ECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIV  196 (208)
Q Consensus       147 e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~  196 (208)
                      ...|++.|+.+.++......++|-.+|.++++.+.   +-+..|.+.++.+++
T Consensus       486 ~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~  538 (618)
T KOG3762|consen  486 HVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLV  538 (618)
T ss_pred             hhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHH
Confidence            99999999999999777778888899999998876   556666666555544

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.71  E-value=4.9e-07  Score=74.19  Aligned_cols=115  Identities=17%  Similarity=0.263  Sum_probs=96.1

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhc--cHHHHHHHHHHHhhhhhhHHHHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSK--DVVLFSLSRFLTGVGHFNAFIFYY  142 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~  142 (208)
                      ++...+....+..++..++.+++++++||+|+|+++..+.++.+++..+..+.+  +.+.+.+..++.|++.+...+..+
T Consensus       258 ~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~  337 (428)
T PF13347_consen  258 NEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPW  337 (428)
T ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccc
Confidence            345677777888999999999999999999999999999999999998888875  889999999999999999999999


Q ss_pred             HHHHhhcCC-------chhhhHHhHHHHHHHHHHHHHHHHHHHhh
Q psy2964         143 IIVLECVGP-------KWRTFAMTFPFLIFYTVSEVALPWIAYYL  180 (208)
Q Consensus       143 ~~~~e~~~~-------~~r~~~~~~~~~~~~~~g~~~~~~~~~~~  180 (208)
                      ++++|..+.       +..+...|+ ++...-++..+++.+.+.+
T Consensus       338 a~~ad~id~~e~~tg~r~~g~~~s~-~~~~~k~~~~la~~i~g~~  381 (428)
T PF13347_consen  338 AMLADVIDYDEWKTGRRREGMYFSV-NSFFIKIGQGLAGAIVGLL  381 (428)
T ss_pred             cccccchhhHHHhcCCCchHHHHHh-hhhhhHHHHHHHHHHHHHH
Confidence            999999863       334566666 6667777777777666654

>TIGR00788 fbt folate/biopterin transporter

Probab=98.70  E-value=4.3e-07  Score=75.45  Aligned_cols=141  Identities=11%  Similarity=0.118  Sum_probs=108.8

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh----------ccHHHHHHHHHHHhhhh
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS----------KDVVLFSLSRFLTGVGH  134 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~g~~~  134 (208)
                      +....+....+..++.+++....+++.+|++.|+++.++.++.+++.......          ++.+.+....++.+++.
T Consensus       286 s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~  365 (468)
T TIGR00788       286 GPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLA  365 (468)
T ss_pred             CcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHH
Confidence            67788888888999999999999999999999999999999998877554311          23334445567888888


Q ss_pred             hhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---h-----h--HHHHHH-HHHHHHHHHHHHhc
Q psy2964         135 FNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---D-----W--QWISVI-TIFPLIVGLIVAIF  203 (208)
Q Consensus       135 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-----w--~~~~~~-~~~~~~~~~~~~~~  203 (208)
                      +........++.+..|++.+++..++ .+....+|..+++.+++.+.   |     +  .+..++ ..++.++.+...++
T Consensus       366 g~~~~~~~~~~~~~~p~~~egt~~al-~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~~~~l  444 (468)
T TIGR00788       366 QLKFMPFLVLLARLCPSGCESSVFAL-LASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLPLLHL  444 (468)
T ss_pred             HHHHccHHHHHHHhCCCCceehHHHH-HHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHh
Confidence            88888999999999999999999999 67678999999998888775   2     3  233333 33444555555567


Q ss_pred             cCC
Q psy2964         204 TPE  206 (208)
Q Consensus       204 ~pe  206 (208)
                      +|+
T Consensus       445 lP~  447 (468)
T TIGR00788       445 LPR  447 (468)
T ss_pred             CCC
Confidence            784

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.69  E-value=2.1e-06  Score=69.49  Aligned_cols=111  Identities=14%  Similarity=0.028  Sum_probs=71.0

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYII  144 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  144 (208)
                      +....+...+...++..++.++.+++.||+|||+.+..+..+..++..+....++.+.......+.+.+.+...+.  ..
T Consensus       237 ~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~--~~  314 (392)
T PRK10473        237 SRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVGFGV--AM  314 (392)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--HH
Confidence            4456777788888999999999999999999999999999888888777776655544444444444444443333  33


Q ss_pred             HHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh
Q psy2964         145 VLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA  181 (208)
Q Consensus       145 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~  181 (208)
                      ..+..|.++|+...+    .....+..+++.+++++.
T Consensus       315 ~~~~~~~~~~~g~~~----~~~~~~~~~g~~~~~~l~  347 (392)
T PRK10473        315 SQALGPFSLRAGVAS----STLGIAQVCGSSLWIWLA  347 (392)
T ss_pred             HHHhccCcccccHHH----HHHHHHHHHHHHHHHHHH
Confidence            455556555542222    223344445555554443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.68  E-value=1.6e-06  Score=72.30  Aligned_cols=127  Identities=6%  Similarity=-0.031  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHh----hhh-hCchHHH--HHHHHHHHHHHHHHhh---------hccHHHHHHHHHHHhh
Q psy2964          69 LAITRSIFFLGSLLGGFILSWV----ADR-YGRITAV--LGSHVVSFLGVALTPF---------SKDVVLFSLSRFLTGV  132 (208)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~g~l----~dr-~Grr~~l--~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~g~  132 (208)
                      .+++.++..+..++.+++..++    .+| .+++...  .++.++.+++....++         ..++++++...++.++
T Consensus       314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~  393 (475)
T TIGR00924       314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL  393 (475)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            5677777777777777775543    443 3334444  6777777777766654         3588889999999999


Q ss_pred             hhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHH
Q psy2964         133 GHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIV  196 (208)
Q Consensus       133 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~  196 (208)
                      +.....|....++++..|++.|++.+|+ +.....+|..+++.+.....   +|.+.|...++..++
T Consensus       394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~-~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  459 (475)
T TIGR00924       394 GELMISPLGLSWWTKIAPQRLMGQMLGM-WFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLL  459 (475)
T ss_pred             HHHHHhHHHHHHHHHhCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHH
Confidence            9999999999999999999999999999 77788899988888777653   566666665554444

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK09669 putative symporter YagG; Provisional

Probab=98.67  E-value=3.6e-06  Score=69.46  Aligned_cols=112  Identities=12%  Similarity=0.071  Sum_probs=82.0

Q ss_pred             hHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhh--hccHHHHHHHHHHHhhhhhhHHHHHHHHH
Q psy2964          68 NLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPF--SKDVVLFSLSRFLTGVGHFNAFIFYYIIV  145 (208)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  145 (208)
                      ..+.......++.+++.+++++++||+|+|+.+..+.++..+......+  .++.+.+.+..++.|++.+...+..++.+
T Consensus       265 ~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~  344 (444)
T PRK09669        265 LATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMF  344 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555666778888999999999999999999888766654433222  24666677778899999999999999999


Q ss_pred             HhhcCC-------chhhhHHhHHHHHHHHHHHHHHHHHHHhh
Q psy2964         146 LECVGP-------KWRTFAMTFPFLIFYTVSEVALPWIAYYL  180 (208)
Q Consensus       146 ~e~~~~-------~~r~~~~~~~~~~~~~~g~~~~~~~~~~~  180 (208)
                      +|..+.       +..+...+. ++...-+|..+++.+++.+
T Consensus       345 ad~~d~~e~~~G~r~~g~~~s~-~~~~~klg~alg~~i~g~l  385 (444)
T PRK09669        345 SDVVDYEEKRSGRRLDGLVFST-NLFAIKLGLAIGGAVVGWI  385 (444)
T ss_pred             HhhhhhhhhhcCcCcchHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            998852       223344555 5666678888888777765

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.65  E-value=7.1e-07  Score=74.28  Aligned_cols=141  Identities=13%  Similarity=0.133  Sum_probs=90.6

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhh----hhCc-hHHHHHHHHHHHHHHHHHhhhcc------HHHHHHHHHHHhhh
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVAD----RYGR-ITAVLGSHVVSFLGVALTPFSKD------VVLFSLSRFLTGVG  133 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~Gr-r~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~g~~  133 (208)
                      +....+.+..+..+.-++..++.|.++|    |+|| |+.++++....+++..++...++      +..+.+.-.+.+++
T Consensus        40 s~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~  119 (473)
T PRK10429         40 SVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMT  119 (473)
T ss_pred             CHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHH
Confidence            5677888888888888999999999999    6799 66666677777776555543321      22333444555667


Q ss_pred             hhhHHHHHHHHHHhhc-CCchhhhHHhHHHHHHHHHHHHHHHHHHHh----hh------hhHHHHHHHHHHHHHHH-HHH
Q psy2964         134 HFNAFIFYYIIVLECV-GPKWRTFAMTFPFLIFYTVSEVALPWIAYY----LA------DWQWISVITIFPLIVGL-IVA  201 (208)
Q Consensus       134 ~~~~~~~~~~~~~e~~-~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~----~~------~w~~~~~~~~~~~~~~~-~~~  201 (208)
                      .........++..|+. ++++|.+..+. ......+|..+.+.+...    ..      +|+....+.++..++.. +..
T Consensus       120 ~t~~~ip~~al~~~lt~~~~eR~~l~~~-~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~  198 (473)
T PRK10429        120 YTIMDIPFWSLVPTLTLDKREREQLVPY-PRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITL  198 (473)
T ss_pred             HHHHcchHHhhhHHhCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            7777778889999998 69999988776 344444554443333221    11      45666555555554433 334


Q ss_pred             hccCC
Q psy2964         202 IFTPE  206 (208)
Q Consensus       202 ~~~pe  206 (208)
                      +..+|
T Consensus       199 ~~~~e  203 (473)
T PRK10429        199 RNVHE  203 (473)
T ss_pred             cCcee
Confidence            44555

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.65  E-value=1.7e-07  Score=74.85  Aligned_cols=140  Identities=14%  Similarity=0.008  Sum_probs=98.7

Q ss_pred             eeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh-------ccHHHHHHHH
Q psy2964          55 RRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS-------KDVVLFSLSR  127 (208)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~  127 (208)
                      +.++|++   +....+.....+.+...+..+.+|+++||+|.++++......++++..+....       .+........
T Consensus       245 ~~~~fg~---~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  321 (417)
T COG2223         245 LVTQFGL---SPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVF  321 (417)
T ss_pred             HHHhcCC---ChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHH
Confidence            5566776   67778888999999999999999999999999999999999999988776665       3344444434


Q ss_pred             HHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHH
Q psy2964         128 FLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA----DWQWISVITIFPLIVGLI  199 (208)
Q Consensus       128 ~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~  199 (208)
                      +..+++.+......+..+...+|. +-+...|+ .+...++|+..-|..-+...    .+...|++.....+++.+
T Consensus       322 l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~-vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v  395 (417)
T COG2223         322 LALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGI-VGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALV  395 (417)
T ss_pred             HHHHHHhccCcchheeechHHHHh-hhhHHHHH-HHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            444444444444556677777754 55666677 56666777666665555543    477777777666666444

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.64  E-value=9.4e-11  Score=96.50  Aligned_cols=132  Identities=18%  Similarity=0.239  Sum_probs=82.6

Q ss_pred             HHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHh--h--h-cc-----HHHHHHHH-HHHhhhhhhHHHHHHH
Q psy2964          75 IFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTP--F--S-KD-----VVLFSLSR-FLTGVGHFNAFIFYYI  143 (208)
Q Consensus        75 ~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~--~--~-~~-----~~~~~~~~-~l~g~~~~~~~~~~~~  143 (208)
                      ...+...++.+....+.||+|||+.++.+..+.+++.+.++  .  . ++     ...+.... ....+.. ...+..+.
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~-g~~~~~~~  372 (451)
T PF00083_consen  294 ILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSL-GWGPLPWI  372 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeeccccccc-cccccccc
Confidence            33445566777777999999999999999998888877664  1  1 11     11111111 1122222 23367778


Q ss_pred             HHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHH-HHHHHHHHhccCCCC
Q psy2964         144 IVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFP-LIVGLIVAIFTPESA  208 (208)
Q Consensus       144 ~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~-~~~~~~~~~~~petp  208 (208)
                      +.+|.+|++.|+++.+++.... .++..+++.+...+.   +-...+.+.+.+ .+...+.++++|||.
T Consensus       373 ~~~ElfPt~~R~~~~~~~~~~~-~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~  440 (451)
T PF00083_consen  373 YTAELFPTKVRSTGIGLSYAVG-RIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETK  440 (451)
T ss_pred             cccccccccccccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCC
Confidence            9999999999999999965543 356666655544433   202234444443 444556778899984

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.63  E-value=1.5e-06  Score=71.65  Aligned_cols=124  Identities=10%  Similarity=-0.079  Sum_probs=77.5

Q ss_pred             HHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHh-hh-----ccHHHHHHHHHHHhhhhhhHHHHHHHHHHh
Q psy2964          74 SIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTP-FS-----KDVVLFSLSRFLTGVGHFNAFIFYYIIVLE  147 (208)
Q Consensus        74 ~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e  147 (208)
                      .+..+...+..+++|+++||+|+|+++.++.+...++..... ..     .+++.+.+..+...++.|........++..
T Consensus       293 ~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~  372 (462)
T PRK15034        293 FFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAV  372 (462)
T ss_pred             HHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHH
Confidence            344567788899999999999999999999987777664322 22     234555554444445555555666677777


Q ss_pred             hcCC---------------------chhhhHHhHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHH
Q psy2964         148 CVGP---------------------KWRTFAMTFPFLIFYTVSEVALPWIAYYLA----DWQWISVITIFPLIVGL  198 (208)
Q Consensus       148 ~~~~---------------------~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~~~~~~  198 (208)
                      .+|.                     ++-+.+.|+ .+....+|+.+.|..-+...    ++...++...+..+++.
T Consensus       373 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~-v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~  447 (462)
T PRK15034        373 IFRQITIYRVKMKGGSDEQAQREAVTETAAALGF-ISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCV  447 (462)
T ss_pred             HHhhhhhhcccccccchhHHhhHHHHHHHHHHHH-HHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            7764                     134445555 44455666666674444332    56666666655554433

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.63  E-value=1.5e-06  Score=70.68  Aligned_cols=98  Identities=15%  Similarity=0.118  Sum_probs=77.4

Q ss_pred             hcccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhC-chHHHHHHHHHHHHHHHHHhhhccHHHHHHHHH
Q psy2964          50 RRRRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYG-RITAVLGSHVVSFLGVALTPFSKDVVLFSLSRF  128 (208)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G-rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (208)
                      +.++...++.++   +..++|.+.++..+..++.++++|.++||++ +|+.+.+..++.++........++++.++....
T Consensus        23 p~~~~~L~~~G~---s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~   99 (400)
T PF03825_consen   23 PYLPLYLESRGF---SGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIML   99 (400)
T ss_pred             HHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            334556666676   7789999999999999999999999999986 567777777777776666777788888887777


Q ss_pred             HHhhhhhhHHHHHHHHHHhhcC
Q psy2964         129 LTGVGHFNAFIFYYIIVLECVG  150 (208)
Q Consensus       129 l~g~~~~~~~~~~~~~~~e~~~  150 (208)
                      +..+......|...++..+...
T Consensus       100 l~~~~~~p~~pl~dsi~~~~~~  121 (400)
T PF03825_consen  100 LFSFFFSPTMPLSDSIALSYLG  121 (400)
T ss_pred             HHHHHHccHHHHHHHHHHHHcc
Confidence            7777777777888888877764

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.62  E-value=5.8e-06  Score=68.85  Aligned_cols=115  Identities=10%  Similarity=0.127  Sum_probs=82.7

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhh-----hccHHHHHHHHHHHhhhhhhHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPF-----SKDVVLFSLSRFLTGVGHFNAFI  139 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~g~~~~~~~~  139 (208)
                      +....+...++..++.+++.+++++++||+|+|+.+..+..+..++......     .++.+.+.+..++.|++.+...+
T Consensus       264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~  343 (473)
T PRK10429        264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV  343 (473)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence            3445566666667888999999999999999999999888776655544332     24556666677888888888888


Q ss_pred             HHHHHHHhhcC-----Cch--hhhHHhHHHHHHHHHHHHHHHHHHHhh
Q psy2964         140 FYYIIVLECVG-----PKW--RTFAMTFPFLIFYTVSEVALPWIAYYL  180 (208)
Q Consensus       140 ~~~~~~~e~~~-----~~~--r~~~~~~~~~~~~~~g~~~~~~~~~~~  180 (208)
                      ..+++++|..+     ..+  .+...|. .....-+|..+++.+.+++
T Consensus       344 ~~~am~ad~id~~e~~tG~R~~G~~~s~-~~~~~K~~~al~~~i~g~~  390 (473)
T PRK10429        344 LQVIMVADTVDYGEYKLGIRCESIAYSV-QTMVVKGGSAFAAFFIGVV  390 (473)
T ss_pred             HHHHHHhhhhhhhhHhcCccchhHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            99999999955     233  3334555 5555667777777766654

>PRK11043 putative transporter; Provisional

Probab=98.60  E-value=5.1e-06  Score=67.44  Aligned_cols=123  Identities=8%  Similarity=-0.008  Sum_probs=82.8

Q ss_pred             ceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHH---hh--hccHHHHHHHHH
Q psy2964          54 RRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALT---PF--SKDVVLFSLSRF  128 (208)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~  128 (208)
                      .+.++.++   +....++......++..++.+..+++.||+|+|+.+........++....   ..  .++.+.......
T Consensus       228 ~~~~~~g~---s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (401)
T PRK11043        228 FILEQMGY---SPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFC  304 (401)
T ss_pred             HHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence            33344454   45566777777778888999999999999999987766555544443322   11  234555555667


Q ss_pred             HHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh
Q psy2964         129 LTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA  181 (208)
Q Consensus       129 l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~  181 (208)
                      +.|++.+...+.......+..| ++|+++.++ .+.....+...++.+.+.+.
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~-~~~~~~~~~~~~~~~~g~l~  355 (401)
T PRK11043        305 VMAAANGAIYPIVVAQALRPFP-QATGKAAAL-QNTLQLGLCFLASLLVSALI  355 (401)
T ss_pred             HHHHHHHHHHHHHHHHHhhhCc-ccChHHHHH-HHHHHHHHHHHHHHHHHHcc
Confidence            7788888888888788777775 579999999 45454555555555555543

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.58  E-value=3.5e-06  Score=68.89  Aligned_cols=109  Identities=14%  Similarity=0.082  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHHHHhhc
Q psy2964          70 AITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIVLECV  149 (208)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~  149 (208)
                      +...+.+..+..+|.++.+++.||+++|+++.+..++..+...+....++... ...-.+.|++.+..+|...+...+..
T Consensus       272 ~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~~glf~s~~fp~i~sl~~~~~  350 (410)
T TIGR00885       272 ANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTLCSAFMSLMFPTIYGIALKGL  350 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            44556666788999999999999999999999998888888887777766443 56677888888888999999999999


Q ss_pred             CCchhhhHHhHHHHHHHHHHHHHHHHHHHhhhh
Q psy2964         150 GPKWRTFAMTFPFLIFYTVSEVALPWIAYYLAD  182 (208)
Q Consensus       150 ~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~  182 (208)
                      +++.+....++  . ...+|..+.|.+.+.+.+
T Consensus       351 g~~~~~~s~~l--~-~~~~Gga~~p~l~G~~~d  380 (410)
T TIGR00885       351 GQDTKYGAAGL--V-MAIIGGGIVPPLQGFIID  380 (410)
T ss_pred             hhhhhhhHHHH--H-HHHhccchHHHHHHHHHH
Confidence            87765545444  2 223888888888887764

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.57  E-value=2e-06  Score=71.26  Aligned_cols=136  Identities=13%  Similarity=0.067  Sum_probs=84.9

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHH--------HHHHHHH--HHHHHHHhh-hccHHHHHHHHHHHhhh
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAV--------LGSHVVS--FLGVALTPF-SKDVVLFSLSRFLTGVG  133 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l--------~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~l~g~~  133 (208)
                      +....++..++..++..++.++.|+++||+++|+..        ..+....  .+..+.... ..+....+++-.+.+.+
T Consensus       295 s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  374 (465)
T TIGR00894       295 SGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAV  374 (465)
T ss_pred             ChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence            556778888889999999999999999998754321        1111111  111111122 22333334444455555


Q ss_pred             hhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh------hhHHHHHHHHHHHHHHHHHHh
Q psy2964         134 HFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA------DWQWISVITIFPLIVGLIVAI  202 (208)
Q Consensus       134 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~------~w~~~~~~~~~~~~~~~~~~~  202 (208)
                      .+...+.......|..| +.++...++ .+....+|..++|.+.+.+.      +|...|.+.++..+++.+...
T Consensus       375 ~~~~~~~~~~~~~~~~~-~~~g~~~g~-~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~  447 (465)
T TIGR00894       375 SSGPLAGVLINSLDLAP-RFLGFIKGI-TGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYL  447 (465)
T ss_pred             hhhhhhhhhhchhhcCh-hHHHHHHHH-HHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHee
Confidence            44444444555566665 489999998 67777788888888887653      377788877766666554443

>KOG4686|consensus

Probab=98.56  E-value=1.5e-06  Score=66.51  Aligned_cols=121  Identities=17%  Similarity=0.055  Sum_probs=93.2

Q ss_pred             eeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHH-HHHHHhhhccHHHHHHHHHHHhhh
Q psy2964          55 RRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFL-GVALTPFSKDVVLFSLSRFLTGVG  133 (208)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~g~~  133 (208)
                      +.+.|++   ++...+.+.+.......+.++++|.++||+|++...+.+.....+ ++....++  .+.=.....+.|+.
T Consensus       291 F~~rfGl---S~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft--~lsPy~~m~~lGLs  365 (459)
T KOG4686|consen  291 FQKRFGL---SAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT--FLSPYTSMTFLGLS  365 (459)
T ss_pred             HHHhhCC---ChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh--hccHHHHHHHHhhh
Confidence            4566777   566677777787888889999999999999999877766554433 33333332  22223456788888


Q ss_pred             hhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh
Q psy2964         134 HFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA  181 (208)
Q Consensus       134 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~  181 (208)
                      .+..-...|..++.+.|.++-+++.++ .++..++|-.+.|++++.+.
T Consensus       366 ysllAcslWP~va~~vpE~qLGTaygf-~qsIqNLgla~i~Iiag~i~  412 (459)
T KOG4686|consen  366 YSLLACSLWPCVASLVPEEQLGTAYGF-IQSIQNLGLAFIPIIAGFIA  412 (459)
T ss_pred             HHHHHHHHhhhhhhhCCHHHhcchHHH-HHHHHhhhhhHHhhhhheee
Confidence            888767789999999999999999999 67789999999999999986

>KOG0255|consensus

Probab=98.56  E-value=6e-06  Score=69.50  Aligned_cols=135  Identities=16%  Similarity=0.162  Sum_probs=97.2

Q ss_pred             HHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHH---HHHHHHHHHhhhhhhHHHHHHHHHHhhc
Q psy2964          73 RSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVV---LFSLSRFLTGVGHFNAFIFYYIIVLECV  149 (208)
Q Consensus        73 ~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~g~~~~~~~~~~~~~~~e~~  149 (208)
                      ...............+...|+.|||.....+..+..++.++.+......   ...+...+..++.+..+.....+.+|.+
T Consensus       356 ~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~  435 (521)
T KOG0255|consen  356 FTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELI  435 (521)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3344444555666667899999999999999999999999888875433   2445555555666666677799999999


Q ss_pred             CCchhhhHHhHHHHHHHHHHHHHHHHHHHhhhh-hHH-HHHHHHHHHHH-HHHHHhccCCCC
Q psy2964         150 GPKWRTFAMTFPFLIFYTVSEVALPWIAYYLAD-WQW-ISVITIFPLIV-GLIVAIFTPESA  208 (208)
Q Consensus       150 ~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~-w~~-~~~~~~~~~~~-~~~~~~~~petp  208 (208)
                      |+..|..+.+. .+....+|.+++|.+...... +.. .+.+.+....+ +.+...++|||.
T Consensus       436 pt~~r~~~~~~-~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~  496 (521)
T KOG0255|consen  436 PTVVRNTAVGA-ISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLALLLGLLSLLLLPETK  496 (521)
T ss_pred             cHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhcCcccC
Confidence            99999999999 677888999999988876642 222 22223444444 445557889873

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.55  E-value=6.5e-06  Score=69.07  Aligned_cols=109  Identities=15%  Similarity=0.090  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHHhHHHHH----HHhhhhhCchHHHHHHHHHHHHHHHHHhhhcc---------HHHHHHHHHHHhhhhh
Q psy2964          69 LAITRSIFFLGSLLGGFIL----SWVADRYGRITAVLGSHVVSFLGVALTPFSKD---------VVLFSLSRFLTGVGHF  135 (208)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~----g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~g~~~~  135 (208)
                      .++..++..+...+..++.    +++.+|+++...+.++.++.+++....+...+         .++++...++.|++..
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~  397 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL  397 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence            4555666665555555555    55566666667788888888888877665533         4578888999999999


Q ss_pred             hHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHH
Q psy2964         136 NAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAY  178 (208)
Q Consensus       136 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~  178 (208)
                      ...|....++.+..|++.|++.+|. +.....+|..++..+..
T Consensus       398 ~~~p~g~s~~~~~aP~~~rg~~~g~-~~l~~a~g~~~~g~~~~  439 (500)
T PRK09584        398 MISGLGLAMVAQLVPQRLMGFIMGS-WFLTTAGAALIAGYVAN  439 (500)
T ss_pred             HHhHHHHHHHHHhCcHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998 66666677776655553

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.53  E-value=7.4e-06  Score=57.67  Aligned_cols=107  Identities=7%  Similarity=0.016  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHHHHhhcC
Q psy2964          71 ITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIVLECVG  150 (208)
Q Consensus        71 ~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~  150 (208)
                      ...++......+.+++.+.+.+++|.|+.++++.+...+-.... +-++.+.++.+-.+.|++.+..+.....++.+..+
T Consensus        41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~  119 (156)
T PF05978_consen   41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYST  119 (156)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCC
Confidence            33466666778888889999999999999999999988654433 44677888999999999999999999999999999


Q ss_pred             CchhhhHHhHHHHHHHHHHHHHHHHHHHh
Q psy2964         151 PKWRTFAMTFPFLIFYTVSEVALPWIAYY  179 (208)
Q Consensus       151 ~~~r~~~~~~~~~~~~~~g~~~~~~~~~~  179 (208)
                      ++.|++..++.+. ....+.+.|.++...
T Consensus       120 ~~~~~~~~~ifw~-i~~~s~i~G~~~~~~  147 (156)
T PF05978_consen  120 EETIGRNTGIFWA-IFQSSLIFGNLFLFF  147 (156)
T ss_pred             HHHHhhHHHHHHH-HHHHHHHHHHHHHHH
Confidence            9999999888544 444566666554443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.51  E-value=1.2e-05  Score=66.69  Aligned_cols=137  Identities=8%  Similarity=-0.013  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHhHHHHHHHhhhhhCc-hHHHHHHHHHHHHHHHHHhhhcc---------------------HHHHHHHHH
Q psy2964          71 ITRSIFFLGSLLGGFILSWVADRYGR-ITAVLGSHVVSFLGVALTPFSKD---------------------VVLFSLSRF  128 (208)
Q Consensus        71 ~~~~~~~~~~~~~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~  128 (208)
                      +....+.+...+.+++-.++.+|+|+ |.....+.++.+++.....+.++                     .+..++...
T Consensus       309 ~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  388 (477)
T TIGR01301       309 FGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFA  388 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHH
Confidence            44455555656777788889999995 77778888888877776665432                     366777788


Q ss_pred             HHhhhhhhHHHHHHHHHHhhcCC--chhhhHHhHHHHHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHH-HHHH
Q psy2964         129 LTGVGHFNAFIFYYIIVLECVGP--KWRTFAMTFPFLIFYTVSEVALPWIAYYLA-----DWQWISVITIFPLIV-GLIV  200 (208)
Q Consensus       129 l~g~~~~~~~~~~~~~~~e~~~~--~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~w~~~~~~~~~~~~~-~~~~  200 (208)
                      +.|+..+......++++++..+.  +..|..+|+ ++.+..+.+.+..+..+.+.     +-.+.+.+.++..++ +.+.
T Consensus       389 ~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgi-lN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~  467 (477)
T TIGR01301       389 ILGIPLAITYSIPFALASIRSSNLGAGQGLSMGV-LNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLA  467 (477)
T ss_pred             HhhHHHHHHHHHhHHHHHHHccccCCCCcchhhH-HHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHH
Confidence            99999999999999999999985  455889999 78888888888776655543     345677778887777 5556


Q ss_pred             HhccCCCC
Q psy2964         201 AIFTPESA  208 (208)
Q Consensus       201 ~~~~petp  208 (208)
                      ++.+|.+|
T Consensus       468 ~~~~~~~~  475 (477)
T TIGR01301       468 LILLPRPR  475 (477)
T ss_pred             HHhCCCCC
Confidence            67788764

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG0252|consensus

Probab=98.48  E-value=3.6e-08  Score=79.54  Aligned_cols=127  Identities=16%  Similarity=0.187  Sum_probs=92.9

Q ss_pred             HHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccH-------H-HHHHHHHHHhhhhhhHHHHHHHHHHhhc
Q psy2964          78 LGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDV-------V-LFSLSRFLTGVGHFNAFIFYYIIVLECV  149 (208)
Q Consensus        78 ~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~l~g~~~~~~~~~~~~~~~e~~  149 (208)
                      .++..|-.+...++|++|||+..+.+..++.+..+..+...+.       . ...+..++.-+|   .......+.+|.+
T Consensus       359 ~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFG---Pn~ttfivpaE~F  435 (538)
T KOG0252|consen  359 CSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFG---PNATTFIVPAEIF  435 (538)
T ss_pred             HccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcC---CCceeEEeehhhc
Confidence            3444577777788999999999999999999998888776551       1 112223333333   2345567889999


Q ss_pred             CCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh--------hhHHHHHHHHHHHHHHHHHHhccCCCC
Q psy2964         150 GPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA--------DWQWISVITIFPLIVGLIVAIFTPESA  208 (208)
Q Consensus       150 ~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~--------~w~~~~~~~~~~~~~~~~~~~~~petp  208 (208)
                      |.+.|++..|+ .....-.|.+++...-..+.        +.++.+++.+.+.++..+..+++|||.
T Consensus       436 ParvR~t~hGI-sAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk  501 (538)
T KOG0252|consen  436 PARVRSTCHGI-SAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETK  501 (538)
T ss_pred             hHHHhhhhhhH-HHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeeccc
Confidence            99999999999 45555567777665555543        568889999999998888888899973

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.43  E-value=1.6e-05  Score=66.52  Aligned_cols=111  Identities=10%  Similarity=0.102  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHhhhhhCchHH-------HHHHHHHHHHHHHHHh-----hh-----ccHHHHHHHHHHHh
Q psy2964          69 LAITRSIFFLGSLLGGFILSWVADRYGRITA-------VLGSHVVSFLGVALTP-----FS-----KDVVLFSLSRFLTG  131 (208)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~-------l~~~~~~~~~~~~~~~-----~~-----~~~~~~~~~~~l~g  131 (208)
                      ..+++++..+..++..++.+++.||+|+|+.       +.++.++.+++.+..+     ..     .+.+.+...-++.|
T Consensus       311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g  390 (489)
T PRK10207        311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQS  390 (489)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Confidence            3555666667777888889999999999973       6667777666653221     11     24677777889999


Q ss_pred             hhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhh
Q psy2964         132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL  180 (208)
Q Consensus       132 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~  180 (208)
                      ++.+...+....++.+..|++.++.++|+ +.....+|..++..++...
T Consensus       391 ~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~-~~l~~~ig~~lg~~l~~~~  438 (489)
T PRK10207        391 LGELFISALGLAMIAALVPQHLMGFILGM-WFLTQAAAFLLGGYVATFT  438 (489)
T ss_pred             HHHHHHhHHHHHHHHHhChHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999 7778888888887777544

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.40  E-value=2.8e-05  Score=62.96  Aligned_cols=115  Identities=10%  Similarity=-0.038  Sum_probs=81.0

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHH-HHHhh--hccHHHHHHHHHHHhhhhhhHHHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGV-ALTPF--SKDVVLFSLSRFLTGVGHFNAFIFY  141 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~l~g~~~~~~~~~~  141 (208)
                      +....++......++..++.++.+++.||+|++.............. .....  ..+.+.+.....+.|++.+...+..
T Consensus       241 ~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  320 (394)
T PRK11652        241 SSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLFPLA  320 (394)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566777777788888899999999999984333222222222111 11111  2355666777888999999888999


Q ss_pred             HHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh
Q psy2964         142 YIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA  181 (208)
Q Consensus       142 ~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~  181 (208)
                      ..+..|..| ++++...++ .+....+|..+++.+++.+.
T Consensus       321 ~~~~~~~~~-~~~g~~~~~-~~~~~~lg~~~~~~~~~~~~  358 (394)
T PRK11652        321 TSGAMEPFP-YLAGTAGAL-LGGLQNIGSGLAALLSAMLP  358 (394)
T ss_pred             HHHHHhhcc-ccchHHHHH-HHHHHHHHHHHHHHHHHHcc
Confidence            999999886 578888888 66677889999988887765

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.39  E-value=1.2e-05  Score=69.22  Aligned_cols=134  Identities=19%  Similarity=0.150  Sum_probs=96.1

Q ss_pred             CchHHHHHHHHHHHHHhHHHHHHHhhh-hhCchHHHHHHHHHHHHHHHHHhhhcc--------HHHHHHHHHHHhhhhhh
Q psy2964          66 SSNLAITRSIFFLGSLLGGFILSWVAD-RYGRITAVLGSHVVSFLGVALTPFSKD--------VVLFSLSRFLTGVGHFN  136 (208)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~Grr~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~g~~~~~  136 (208)
                      ......+...+....-+.++++|+++| ++||++.+.++.++..++..+..+...        ....+++-.+.+.|.|.
T Consensus        22 ~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~Gg  101 (654)
T TIGR00926        22 ESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGG  101 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccc
Confidence            444555556666666778889999999 789999999999999999887766421        12345666778888888


Q ss_pred             HHHHHHHHHHhhcCCch---hhhHHhHHHHHHHHHHHHHHHHHHHhhh----------hhHHHHHHHHHHHHHHHHH
Q psy2964         137 AFIFYYIIVLECVGPKW---RTFAMTFPFLIFYTVSEVALPWIAYYLA----------DWQWISVITIFPLIVGLIV  200 (208)
Q Consensus       137 ~~~~~~~~~~e~~~~~~---r~~~~~~~~~~~~~~g~~~~~~~~~~~~----------~w~~~~~~~~~~~~~~~~~  200 (208)
                      .-++..+...|.++++.   |.....+ +-.+.++|..+++.+..++.          +|...|.+.++..++++++
T Consensus       102 iKp~vsaf~gdqf~~~~~~~~~s~F~~-fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lv  177 (654)
T TIGR00926       102 IKPCVSAFGGDQFEERQLSLRSRFFSF-FYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIV  177 (654)
T ss_pred             cccCchhhhHhhcCccchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHH
Confidence            88999999999997543   4556666 33466677777777766664          3777787777666654443

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.39  E-value=5.2e-05  Score=63.17  Aligned_cols=143  Identities=20%  Similarity=0.136  Sum_probs=95.9

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHH-HHHHHHhhh-c-cHHHHHHHHHHHhhhhhhHHHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSF-LGVALTPFS-K-DVVLFSLSRFLTGVGHFNAFIFY  141 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~l~g~~~~~~~~~~  141 (208)
                      .+...++..++..+..++..++.|.++|+-|+||.++....+.+ ++++++.+. + +++...+...+.-.+.+......
T Consensus        68 ~~s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfy  147 (477)
T PF11700_consen   68 TSSLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFY  147 (477)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566788889999999999999999999988877665555544 445555553 3 34444445555557777788899


Q ss_pred             HHHHHhhcCCchh--------------------------hhHHhHHHHHHHHHHHHHHHHHHHhhh-----------hhH
Q psy2964         142 YIIVLECVGPKWR--------------------------TFAMTFPFLIFYTVSEVALPWIAYYLA-----------DWQ  184 (208)
Q Consensus       142 ~~~~~e~~~~~~r--------------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~-----------~w~  184 (208)
                      .+++.|+.+++.+                          ++..+..++.++ +|..+.-.+...+.           +-|
T Consensus       148 na~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy-~G~~v~l~i~l~~~~~~~~~~~~~~~~r  226 (477)
T PF11700_consen  148 NAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGY-IGGLVALLISLLLVISPGSTASNTWAIR  226 (477)
T ss_pred             HHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHH-HHHHHHHHHHHHHHHcCCCccccchhhh
Confidence            9999999998888                          787777555444 44444333322221           236


Q ss_pred             HHHHHHHHHHHH-HHHHHhccCCCC
Q psy2964         185 WISVITIFPLIV-GLIVAIFTPESA  208 (208)
Q Consensus       185 ~~~~~~~~~~~~-~~~~~~~~petp  208 (208)
                      ..+.+.++..++ .+...+++||.|
T Consensus       227 ~~~~~~a~ww~vfsiP~~~~~~~~~  251 (477)
T PF11700_consen  227 VAFLIVALWWLVFSIPLFLWLPDRP  251 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            667776666544 666777777754

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK11462 putative transporter; Provisional

Probab=98.38  E-value=2e-05  Score=65.44  Aligned_cols=141  Identities=11%  Similarity=0.010  Sum_probs=90.6

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhh----hCchHHHH-HHHHHHHHHHHHHhhhcc------HHHHHHHHHHHhhh
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADR----YGRITAVL-GSHVVSFLGVALTPFSKD------VVLFSLSRFLTGVG  133 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~Grr~~l~-~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~g~~  133 (208)
                      +....+.+..+.-+--++.-|+.|.++||    +|||+..+ ++.+..+++..++-..++      ...+.+.-.+...+
T Consensus        43 ~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~  122 (460)
T PRK11462         43 PAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLL  122 (460)
T ss_pred             CHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHH
Confidence            55566777777777778899999999994    79876554 565666666655544332      22333444555677


Q ss_pred             hhhHHHHHHHHHHhhcC-CchhhhHHhHHHHHHHHHHHHHHHHHHHh----hh------hhHHHHHHHHHHHHHHHH-HH
Q psy2964         134 HFNAFIFYYIIVLECVG-PKWRTFAMTFPFLIFYTVSEVALPWIAYY----LA------DWQWISVITIFPLIVGLI-VA  201 (208)
Q Consensus       134 ~~~~~~~~~~~~~e~~~-~~~r~~~~~~~~~~~~~~g~~~~~~~~~~----~~------~w~~~~~~~~~~~~~~~~-~~  201 (208)
                      .........++.+|+.+ +++|++..++ ...+..+|..+++.+...    ..      +|+....+.+++.+++.+ +.
T Consensus       123 ~t~~~ipy~al~~~lt~d~~eRt~l~s~-r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~  201 (460)
T PRK11462        123 YTVVNIPYCALGGVITNDPTQRISLQSW-RFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCF  201 (460)
T ss_pred             HHHHhccHHHHHHHhcCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            77777888899999976 8999999887 565666666555444322    11      466666666665555443 33


Q ss_pred             hccCC
Q psy2964         202 IFTPE  206 (208)
Q Consensus       202 ~~~pe  206 (208)
                      ...+|
T Consensus       202 ~~~kE  206 (460)
T PRK11462        202 FTTKE  206 (460)
T ss_pred             hccee
Confidence            33444

>KOG2563|consensus

Probab=98.38  E-value=7.4e-06  Score=66.29  Aligned_cols=115  Identities=18%  Similarity=0.147  Sum_probs=87.0

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh------ccHH--HHHHHHHHHhhhhhh
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS------KDVV--LFSLSRFLTGVGHFN  136 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~l~g~~~~~  136 (208)
                      +....-|...+|++.+....+++-|+.||+|-|..+.++....+++..+-..+      +.++  ....+..+.+.....
T Consensus        77 s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~F  156 (480)
T KOG2563|consen   77 SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPF  156 (480)
T ss_pred             chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhH
Confidence            44556788999999999999999999999999999999999999998775543      2334  566777787777666


Q ss_pred             HHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhh
Q psy2964         137 AFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL  180 (208)
Q Consensus       137 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~  180 (208)
                      ......-+..-|+++++|+.+..+. ..+..+|..++.++...+
T Consensus       157 im~lPskiA~~WF~~~qra~A~~~~-v~~n~LGvavg~llppil  199 (480)
T KOG2563|consen  157 ILGLPSKIAAVWFPPDQRAIATVLG-VMGNPLGVAVGFLLPPIL  199 (480)
T ss_pred             hhccccHHHHhhCCcchhhhhhhHH-HhcchHHHHHHhhcccee
Confidence            6555556677789999999998773 334456666555554443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.37  E-value=7e-07  Score=73.31  Aligned_cols=141  Identities=16%  Similarity=0.220  Sum_probs=97.4

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhh----hhCchHHHH-HHHHHHHHHHHHHhhh-c-------cHHHHHHHHHHHh
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVAD----RYGRITAVL-GSHVVSFLGVALTPFS-K-------DVVLFSLSRFLTG  131 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~Grr~~l~-~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~l~g  131 (208)
                      +....+.+..+..+..++..++.|.++|    |+|||+..+ .+....+++..++... +       ....+.+.-++..
T Consensus        35 ~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~  114 (428)
T PF13347_consen   35 SPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYILFD  114 (428)
T ss_pred             CHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHH
Confidence            5667788888888888899999999999    899766554 6777777777666655 3       1223345555667


Q ss_pred             hhhhhHHHHHHHHHHhhcC-CchhhhHHhHHHHHHHHHHHHHHHHHHHh----hh------hhHHHHHHHHHHHHHH-HH
Q psy2964         132 VGHFNAFIFYYIIVLECVG-PKWRTFAMTFPFLIFYTVSEVALPWIAYY----LA------DWQWISVITIFPLIVG-LI  199 (208)
Q Consensus       132 ~~~~~~~~~~~~~~~e~~~-~~~r~~~~~~~~~~~~~~g~~~~~~~~~~----~~------~w~~~~~~~~~~~~~~-~~  199 (208)
                      ++.........++..|+.+ +++|.+..+. ...+..+|..+...+...    ..      +|++...+.+++.++. .+
T Consensus       115 ~~~t~~~i~~~al~~~lt~~~~~R~~l~~~-~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i  193 (428)
T PF13347_consen  115 IAYTFVQIPYNALIPELTPDPDERTRLSSW-RMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLI  193 (428)
T ss_pred             HhhhhccCchhhcCccccccHhhhhhHHHH-HHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhh
Confidence            7777777888899999987 5788888777 555555666443333332    22      5888887777776664 44


Q ss_pred             HHhccCC
Q psy2964         200 VAIFTPE  206 (208)
Q Consensus       200 ~~~~~pe  206 (208)
                      ..+..+|
T Consensus       194 ~~~~~ke  200 (428)
T PF13347_consen  194 TFFFVKE  200 (428)
T ss_pred             hhheeee
Confidence            4555666

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.33  E-value=7.1e-05  Score=60.16  Aligned_cols=138  Identities=14%  Similarity=0.128  Sum_probs=108.0

Q ss_pred             cccccccCCchHHHHHHHHHHHHHhHHHHHHHhhh-hhCchHHHHHHHHHHHHHHHHHhh---hccHHHHHHHHHHHhhh
Q psy2964          58 RDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVAD-RYGRITAVLGSHVVSFLGVALTPF---SKDVVLFSLSRFLTGVG  133 (208)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~g~~  133 (208)
                      -|++   +..+...++.....|..++-...|++.. |.++|+...+++....++..+...   ..+.+.+...-++.|++
T Consensus       238 Vfgm---sv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g  314 (403)
T PF03209_consen  238 VFGM---SVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLG  314 (403)
T ss_pred             HcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHh
Confidence            3566   5667788888999999999999998876 788888888888888777665444   46788888999999999


Q ss_pred             hhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh-------------hhHHHHHHHHHHHHHHHH
Q psy2964         134 HFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA-------------DWQWISVITIFPLIVGLI  199 (208)
Q Consensus       134 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~-------------~w~~~~~~~~~~~~~~~~  199 (208)
                      .|.......+...++.++++.+..+|. |.....++..++..+++.+.             +|...|.+-++..++++.
T Consensus       315 ~G~f~vgals~mM~lt~~~~aG~~mG~-WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~  392 (403)
T PF03209_consen  315 NGLFTVGALSLMMDLTSAGRAGLFMGA-WGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALV  392 (403)
T ss_pred             hhHHHHHHHHHHHhCCCCcchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHH
Confidence            999998999999999999999999999 88888888888877777653             344455555555444443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR01272 gluP glucose/galactose transporter

Probab=98.32  E-value=9.5e-06  Score=63.90  Aligned_cols=80  Identities=14%  Similarity=-0.030  Sum_probs=68.5

Q ss_pred             hhccHHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh--------------
Q psy2964         116 FSKDVVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA--------------  181 (208)
Q Consensus       116 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~--------------  181 (208)
                      ..++++.+++.-++.|.|.+...+..+.++++..+++++++.+++ .+.++++|..++|.+++.+.              
T Consensus         6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~-~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~   84 (310)
T TIGR01272         6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLAL-TQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA   84 (310)
T ss_pred             HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHH-HHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence            346789999999999999999999999999999999999999999 78899999999999988543              


Q ss_pred             -----hhHHHHHHHHHHHHH
Q psy2964         182 -----DWQWISVITIFPLIV  196 (208)
Q Consensus       182 -----~w~~~~~~~~~~~~~  196 (208)
                           +|+++|++.+...++
T Consensus        85 ~~~~~~~~~~yl~ia~~~~~  104 (310)
T TIGR01272        85 NAEAAKVHTPYLLLAGALAV  104 (310)
T ss_pred             hHHHHHHHHHHHHHHHHHHH
Confidence                 578888866554433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG3764|consensus

Probab=98.29  E-value=3e-06  Score=67.52  Aligned_cols=131  Identities=15%  Similarity=0.124  Sum_probs=101.1

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhC--chHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYG--RITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYY  142 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  142 (208)
                      ..++.+..---..+.+.+++.+.|.++||++  |-.....+++..++++....+++++..+.+-++..+++.+...+...
T Consensus       304 p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~  383 (464)
T KOG3764|consen  304 PGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLI  383 (464)
T ss_pred             CCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHh
Confidence            3445555555567788999999999999999  76666677777777777888899999999988888888887776666


Q ss_pred             HHHHhhcCCc------hhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHH
Q psy2964         143 IIVLECVGPK------WRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIV  196 (208)
Q Consensus       143 ~~~~e~~~~~------~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~  196 (208)
                      ....++...+      ..+...++ ...++.+|..+||.+++.+.   |++|...+.++..++
T Consensus       384 P~l~~lvd~rh~s~~~vYGsVyaI-ad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~i  445 (464)
T KOG3764|consen  384 PTLGYLVDPRHVSGFNVYGSVYAI-ADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLI  445 (464)
T ss_pred             hhhHHhcchhhccccceeeeHHHH-HHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHH
Confidence            6666665433      33466677 57788999999999999987   888887777766655

>PRK11462 putative transporter; Provisional

Probab=98.25  E-value=5.3e-05  Score=62.94  Aligned_cols=113  Identities=12%  Similarity=0.080  Sum_probs=71.3

Q ss_pred             chHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhc--cHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2964          67 SNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSK--DVVLFSLSRFLTGVGHFNAFIFYYII  144 (208)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~  144 (208)
                      ...+....++.++.+++.+++++++||+|+|+.+..+..+..+..++..+.+  +...+.+.-++.|++.+...+..++.
T Consensus       263 ~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m  342 (460)
T PRK11462        263 EVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVM  342 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445667778888899999999999999999987765554444333333332  23334445566777777766777788


Q ss_pred             HHhhcC-----CchhhhHH--hHHHHHHHHHHHHHHHHHHHhh
Q psy2964         145 VLECVG-----PKWRTFAM--TFPFLIFYTVSEVALPWIAYYL  180 (208)
Q Consensus       145 ~~e~~~-----~~~r~~~~--~~~~~~~~~~g~~~~~~~~~~~  180 (208)
                      ++|..+     +.+|..++  +. .+...-+|..+++.+++.+
T Consensus       343 ~ad~~d~~e~~tG~r~~g~~~a~-~~f~~Klg~alg~~i~g~i  384 (460)
T PRK11462        343 MSDTVDYGEWCNGKRLTGISFAG-TLFVLKLGLAFGGALIGWM  384 (460)
T ss_pred             HHHhHhhhHHhcCCCchHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            888765     22344333  43 3445556666666555543

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.25  E-value=7.4e-05  Score=59.12  Aligned_cols=141  Identities=12%  Similarity=0.105  Sum_probs=101.0

Q ss_pred             cccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhh-hhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHH
Q psy2964          51 RRRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVAD-RYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFL  129 (208)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  129 (208)
                      .++.+..|-++   +..+.++..+...+.....++....+.+ +-.+|+..+...+++.++.+.+.+.+....+.- -++
T Consensus       230 WLP~ili~~G~---sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~l  305 (395)
T COG2807         230 WLPAILIDRGL---SAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALL  305 (395)
T ss_pred             HHHHHHHHcCC---CHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHH
Confidence            36778888888   7888999999999999999999999998 556778878877777777776666543222221 489


Q ss_pred             HhhhhhhHHHHHHHHHHhhcCCchhh-hHHhHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHH
Q psy2964         130 TGVGHFNAFIFYYIIVLECVGPKWRT-FAMTFPFLIFYTVSEVALPWIAYYLA----DWQWISVITIFPLIV  196 (208)
Q Consensus       130 ~g~~~~~~~~~~~~~~~e~~~~~~r~-~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~~~~  196 (208)
                      .|++.|..++....++.+-.+..+++ .-.++ .+....+=...+|.+.+++.    +|+...+......+.
T Consensus       306 lG~G~G~~F~laL~li~~rs~~a~~Aa~LSgm-aQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~  376 (395)
T COG2807         306 LGLGQGGAFPLALTLILLRSSDAAIAAALSGM-AQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLL  376 (395)
T ss_pred             HhCccchHHHHHHHHHHhhcCChHHHHHHHHH-hhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHH
Confidence            99999999999999998887544444 44444 23222233456788888876    788776665554444

>PRK09848 glucuronide transporter; Provisional

Probab=98.24  E-value=3.6e-05  Score=63.56  Aligned_cols=120  Identities=14%  Similarity=-0.001  Sum_probs=74.5

Q ss_pred             ecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhh----CchHHH-HHHHHHHHHHHHHHh-hh----cc--HHHHH
Q psy2964          57 RRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRY----GRITAV-LGSHVVSFLGVALTP-FS----KD--VVLFS  124 (208)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~----Grr~~l-~~~~~~~~~~~~~~~-~~----~~--~~~~~  124 (208)
                      +..++   +..+.+.+..+..+...+..++.|+++||.    |||+.. .++.+...+..++.. ..    ++  ....+
T Consensus        37 ~~~gl---~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (448)
T PRK09848         37 DVAGV---GAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAY  113 (448)
T ss_pred             HHcCC---CHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHH
Confidence            33455   677899999999999999999999999986    777654 455444444433322 11    11  12233


Q ss_pred             HHHHHHhhhhhhHHHHHHHHHHhhc-CCchhhhHHhHHHHHH-----HHHHHHHHHHHHHhh
Q psy2964         125 LSRFLTGVGHFNAFIFYYIIVLECV-GPKWRTFAMTFPFLIF-----YTVSEVALPWIAYYL  180 (208)
Q Consensus       125 ~~~~l~g~~~~~~~~~~~~~~~e~~-~~~~r~~~~~~~~~~~-----~~~g~~~~~~~~~~~  180 (208)
                      ....+.+.+.+...+...++..++. ++++|.+..+. ...+     ..++..++|.+....
T Consensus       114 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~-r~~~~~~~~~~~~~~~~p~i~~~~  174 (448)
T PRK09848        114 LTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAA-RGIAASLTFVCLAFLIGPSIKNSS  174 (448)
T ss_pred             HHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhC
Confidence            3445667667777666677777776 44678876554 3222     234455666666543

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.23  E-value=4e-06  Score=67.00  Aligned_cols=95  Identities=13%  Similarity=-0.032  Sum_probs=67.7

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh--c--cHHHHHHHHHHHhhhhhhHHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS--K--DVVLFSLSRFLTGVGHFNAFIF  140 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~l~g~~~~~~~~~  140 (208)
                      +..+.+...++..++..++.++.|+++||+|||+.+..+......+..+....  .  +.+.......+.++..+...+.
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  338 (366)
T TIGR00886       259 SKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGS  338 (366)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccch
Confidence            45667778888888999999999999999999988877776666655544432  2  4444444444444444555556


Q ss_pred             HHHHHHhhcCCchhhhHHhH
Q psy2964         141 YYIIVLECVGPKWRTFAMTF  160 (208)
Q Consensus       141 ~~~~~~e~~~~~~r~~~~~~  160 (208)
                      .+.++++..| ++++.++|+
T Consensus       339 ~~~~~~~~~~-~~~g~~~g~  357 (366)
T TIGR00886       339 TFALVPHIFR-RATGAVSGL  357 (366)
T ss_pred             hhhcchhhch-hhcccHHHH
Confidence            6777888886 688888887

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.17  E-value=0.00015  Score=59.65  Aligned_cols=112  Identities=18%  Similarity=0.177  Sum_probs=82.4

Q ss_pred             chHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhc--cHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2964          67 SNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSK--DVVLFSLSRFLTGVGHFNAFIFYYII  144 (208)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~  144 (208)
                      ....+.......+..++.+++.++.+|+|+|+++..+.++.+++..+..+.+  +.+..++..++.+++.+...+..++.
T Consensus       272 l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam  351 (467)
T COG2211         272 LFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAM  351 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHH
Confidence            3444556666667777799999999999999999999999999998888765  67778888899999999999999999


Q ss_pred             HHhhcC-----CchhhhH--HhHHHHHHHHHHHHHHHHHHHh
Q psy2964         145 VLECVG-----PKWRTFA--MTFPFLIFYTVSEVALPWIAYY  179 (208)
Q Consensus       145 ~~e~~~-----~~~r~~~--~~~~~~~~~~~g~~~~~~~~~~  179 (208)
                      ++|..+     +.+|..+  .+. .....=+|..++..+.++
T Consensus       352 ~~d~vDyge~~TG~R~eGi~~s~-~tF~~K~g~ala~~~~g~  392 (467)
T COG2211         352 VADTVDYGEWKTGVRREGIVYSG-MTFFRKLGLALAGFIPGW  392 (467)
T ss_pred             hcchhhHHHHHhCCCchhhHHHH-HHHHHHHHHHHHHHHHHH
Confidence            998863     3333333  333 333334455555544444

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.10  E-value=0.00024  Score=57.24  Aligned_cols=120  Identities=14%  Similarity=0.143  Sum_probs=83.3

Q ss_pred             ecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhC-----chHHHHH-HHHHHHHHHHHHhhh-----c-------
Q psy2964          57 RRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYG-----RITAVLG-SHVVSFLGVALTPFS-----K-------  118 (208)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G-----rr~~l~~-~~~~~~~~~~~~~~~-----~-------  118 (208)
                      .|+++   .....+...++..+.. ...+.+|+.||+.+     ||..+++ +......+..+..++     .       
T Consensus         8 vEL~v---pA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~   83 (403)
T PF03209_consen    8 VELGV---PAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSG   83 (403)
T ss_pred             HHhcc---HHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccc
Confidence            44554   3445566666655554 46889999999999     7776654 444444444443332     2       


Q ss_pred             cH----HHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh
Q psy2964         119 DV----VLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA  181 (208)
Q Consensus       119 ~~----~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~  181 (208)
                      +.    ........+.|++.+.......++++|..|+++|+++.++.|. ...+|.+++..+.+.+.
T Consensus        84 ~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~-Mli~G~iv~ai~~g~lL  149 (403)
T PF03209_consen   84 PFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWV-MLIVGIIVSAIVFGRLL  149 (403)
T ss_pred             ccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHH-HHHHHHHHHHHHHHHHc
Confidence            12    1333556889999999999999999999999999999999655 66688888776666543

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.06  E-value=0.00045  Score=56.05  Aligned_cols=126  Identities=14%  Similarity=0.199  Sum_probs=93.4

Q ss_pred             HHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCchhhhHH
Q psy2964          79 GSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAM  158 (208)
Q Consensus        79 ~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~  158 (208)
                      .++...++...+.|..|.|++++++.+...+...+..+.++...+-+..++.|++.+.. ...++|+-...|+++--++.
T Consensus        53 Syl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~e-vay~sYiys~v~~~~yq~vt  131 (412)
T PF01770_consen   53 SYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAAE-VAYYSYIYSVVDKEHYQKVT  131 (412)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHH-HHHHHHheeecCHHHHHHHH
Confidence            44566677789999999999999999999999999999999999999999999998875 67788888888887777777


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHHHHHHhccCC
Q psy2964         159 TFPFLIFYTVSEVALPWIAYYLA-----DWQWISVITIFPLIVGLIVAIFTPE  206 (208)
Q Consensus       159 ~~~~~~~~~~g~~~~~~~~~~~~-----~w~~~~~~~~~~~~~~~~~~~~~pe  206 (208)
                      +. .-....+|..++..++-.+.     +++...++......++++..+++|.
T Consensus       132 s~-~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~  183 (412)
T PF01770_consen  132 SY-TRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPM  183 (412)
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            66 33344455455544444333     4555656655555556666666664

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.03  E-value=0.00011  Score=59.65  Aligned_cols=132  Identities=13%  Similarity=0.039  Sum_probs=73.1

Q ss_pred             ccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHH--HHHHH-hhh----ccHH-HHHHHHHHH
Q psy2964          59 DNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFL--GVALT-PFS----KDVV-LFSLSRFLT  130 (208)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~--~~~~~-~~~----~~~~-~~~~~~~l~  130 (208)
                      .++   +..+.|.+.++..+...+.+++.|.++||+|.|+.++.......+  +.+.. .+.    .|.+ ..+++-...
T Consensus        38 ~GL---s~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l  114 (412)
T PF01306_consen   38 AGL---SGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYL  114 (412)
T ss_dssp             H------HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTT
T ss_pred             cCC---CHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466   678899999999999999999999999999977776654433322  22111 111    2322 222333444


Q ss_pred             hhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHH
Q psy2964         131 GVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA--DWQWISVITIFPLIV  196 (208)
Q Consensus       131 g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~--~w~~~~~~~~~~~~~  196 (208)
                      |+......+..-+++.+....+.-..  |- .=....+|..++..++|.+-  +-...+++....+++
T Consensus       115 ~~~f~~~~~~~Ea~~er~sr~~~feY--G~-~R~wGSig~ai~s~~~G~L~~i~p~~~fwi~s~~~~i  179 (412)
T PF01306_consen  115 GLVFNAGVPLSEAYAERVSRRNGFEY--GR-ARMWGSIGFAIASLLAGILFNINPNIIFWIASAAAII  179 (412)
T ss_dssp             TTTTTTHHHHHHHHHHHHHHHHSS-H--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcccchHHHHHHHHHHHHhcCCc--ch-HHHHhhHHHHHHHHHhheeeeeCccHHHHHHHHHHHH
Confidence            55555555676666665542211111  11 01133355556666666554  345567766555544

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.02  E-value=9.7e-07  Score=74.40  Aligned_cols=125  Identities=17%  Similarity=0.161  Sum_probs=3.0

Q ss_pred             ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhc-------------
Q psy2964          52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSK-------------  118 (208)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-------------  118 (208)
                      ..++-..|++   ++.+.+++.+.+-++..+..++..++.+|..|-+.+-.+.++++++++++++-|             
T Consensus        26 lttiErRF~l---~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~  102 (539)
T PF03137_consen   26 LTTIERRFGL---SSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASN  102 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccc
Confidence            5677888898   788999999999999999999999999998887888888888888887765410             


Q ss_pred             -------------------------------------cHHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHH
Q psy2964         119 -------------------------------------DVVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFP  161 (208)
Q Consensus       119 -------------------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~  161 (208)
                                                           -+..+++++++.|+|....++...+|+-|..++++-+..+|+ 
T Consensus       103 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi-  181 (539)
T PF03137_consen  103 SNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGI-  181 (539)
T ss_dssp             -------------------------------------------------SSS----------------------------
T ss_pred             cccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhh-
Confidence                                                 124566788999999999999999999999999999999999 


Q ss_pred             HHHHHHHHHHHHHHHHHhh
Q psy2964         162 FLIFYTVSEVALPWIAYYL  180 (208)
Q Consensus       162 ~~~~~~~g~~~~~~~~~~~  180 (208)
                      ......+|..+|.++++..
T Consensus       182 ~~~~~~lGPa~Gf~lg~~~  200 (539)
T PF03137_consen  182 LYAMSILGPALGFLLGSFC  200 (539)
T ss_dssp             -------------------
T ss_pred             hhHHhhccHHHHHHHHHHH
Confidence            5557778888877777653

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.00  E-value=2.1e-05  Score=49.17  Aligned_cols=75  Identities=13%  Similarity=0.118  Sum_probs=66.3

Q ss_pred             hhhhhcccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHH
Q psy2964          46 EELDRRRRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLF  123 (208)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~  123 (208)
                      ..|.+.+|..+++.++   +..+.+++.+..++|+.+|++...++.++..+++.+..+.+...++.+.+++.++.+.+
T Consensus         9 FayTplLP~M~~~~~l---s~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w   83 (85)
T PF06779_consen    9 FAYTPLLPLMQADGGL---SLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW   83 (85)
T ss_pred             HHHHhHhHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence            4456667788888888   78899999999999999999999999999888999999999999999999998887655

Note that many members are hypothetical proteins.

>KOG2532|consensus

Probab=97.97  E-value=7.8e-05  Score=61.89  Aligned_cols=128  Identities=16%  Similarity=0.140  Sum_probs=87.0

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCc---------hHHHHHHHHHHHHHHHHHhhhcc--H-HHHHHH---HHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGR---------ITAVLGSHVVSFLGVALTPFSKD--V-VLFSLS---RFL  129 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr---------r~~l~~~~~~~~~~~~~~~~~~~--~-~~~~~~---~~l  129 (208)
                      +-...|+..++..+.+.+..+++|.++||.-+         |..-.++....+++.+..++.+.  . ..+...   -.+
T Consensus       292 ~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~  371 (466)
T KOG2532|consen  292 DVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGL  371 (466)
T ss_pred             ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHH
Confidence            45678999999999999999999999998855         33444555555555555666542  2 122222   222


Q ss_pred             HhhhhhhHHHHHHHHHHhhc-CCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh------hhHHHHHHHHHHHHHHHH
Q psy2964         130 TGVGHFNAFIFYYIIVLECV-GPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA------DWQWISVITIFPLIVGLI  199 (208)
Q Consensus       130 ~g~~~~~~~~~~~~~~~e~~-~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~------~w~~~~~~~~~~~~~~~~  199 (208)
                      .|+..+      ..+..-.. .+++-+..+|+ .+....++..++|.+.+.+.      .|+++|++.+++.++..+
T Consensus       372 ~g~~~~------Gf~~~~~~~apq~a~~l~g~-~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i  441 (466)
T KOG2532|consen  372 SGFNIS------GFYKNHQDIAPQHAGFVMGI-INFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNI  441 (466)
T ss_pred             cccchh------hhHhhhhhccchHHHHHHHH-HHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhch
Confidence            222222      22333333 67788888888 67788888999999888775      799999998887777443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=97.92  E-value=0.00025  Score=58.47  Aligned_cols=141  Identities=14%  Similarity=0.141  Sum_probs=93.6

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhh----hhCchH-HHHHHHHHHHHHHHHHhhhcc------HHHHHHHHHHHhhh
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVAD----RYGRIT-AVLGSHVVSFLGVALTPFSKD------VVLFSLSRFLTGVG  133 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~Grr~-~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~g~~  133 (208)
                      +....+.+..+.-+--++.-|+.|.++|    ||||++ -++++.+..++.+.++-.+++      .....+.-.+.+++
T Consensus        46 s~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~  125 (467)
T COG2211          46 SAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLG  125 (467)
T ss_pred             cHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHH
Confidence            5556666666666666788899999999    577754 556666777777776666542      33344455677888


Q ss_pred             hhhHHHHHHHHHHhhc-CCchhhhHHhHHHHHHHHHHHHHHHHHHHh----hh------hhHHHHHHHHHHHHHHHH-HH
Q psy2964         134 HFNAFIFYYIIVLECV-GPKWRTFAMTFPFLIFYTVSEVALPWIAYY----LA------DWQWISVITIFPLIVGLI-VA  201 (208)
Q Consensus       134 ~~~~~~~~~~~~~e~~-~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~----~~------~w~~~~~~~~~~~~~~~~-~~  201 (208)
                      .........++.+|+. ++++|.+..+. ...+..+|..+...+...    ..      +|+....+.+++.++.++ ++
T Consensus       126 YT~vniPy~al~~~iT~d~~ER~~l~s~-R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~  204 (467)
T COG2211         126 YTLVNIPYGALGPEITQDPQERASLTSW-RMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCF  204 (467)
T ss_pred             HHheeCchhhcchhhcCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence            8888888889999996 58889988887 666666665554333322    21      567666666666665443 44


Q ss_pred             hccCC
Q psy2964         202 IFTPE  206 (208)
Q Consensus       202 ~~~pe  206 (208)
                      +..+|
T Consensus       205 ~~v~E  209 (467)
T COG2211         205 FNVKE  209 (467)
T ss_pred             HHhhc
Confidence            44444

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=97.83  E-value=0.00032  Score=56.35  Aligned_cols=113  Identities=19%  Similarity=0.219  Sum_probs=91.0

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYII  144 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  144 (208)
                      +..+.+...+.+..+.++|.++..++..|+-..+.+.+..++..+.++..+++++.. -+.+-++.|+..+..+|...+.
T Consensus       270 ~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v-~~~~l~~ig~F~simfPTIfsl  348 (422)
T COG0738         270 NEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVV-ALYALFLIGLFNSIMFPTIFSL  348 (422)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChH-HHHHHHHHHHHhHHHHHHHHHH
Confidence            566778889999999999999999999999999999999988888888888888844 3445678888999999999999


Q ss_pred             HHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh
Q psy2964         145 VLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA  181 (208)
Q Consensus       145 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~  181 (208)
                      ..+..|.+. ..+-++  -....+|+.+.|.+.+++.
T Consensus       349 al~~l~~~t-s~~s~~--l~maivGGAiiP~l~G~i~  382 (422)
T COG0738         349 ALKNLGEHT-SVGSGL--LVMAIVGGAIIPPLQGVIA  382 (422)
T ss_pred             HHhccCccc-ccccee--eeeheecchHHHHHHHHHH
Confidence            999998433 333222  2355578888888888876

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.75  E-value=0.0017  Score=55.35  Aligned_cols=108  Identities=13%  Similarity=-0.049  Sum_probs=79.3

Q ss_pred             hHHHHHHHHHHHHHhHHHHHHHhhhhhCc-hHHHHHHHHHHHHHHHHHhhh--ccHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2964          68 NLAITRSIFFLGSLLGGFILSWVADRYGR-ITAVLGSHVVSFLGVALTPFS--KDVVLFSLSRFLTGVGHFNAFIFYYII  144 (208)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~  144 (208)
                      ..++....+.++..+++.+.|.+..+++| |+.++++.+++.+++-+++..  +|.......-++.|++.|.........
T Consensus       350 ~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~  429 (599)
T PF06609_consen  350 EIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVI  429 (599)
T ss_pred             eeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHe
Confidence            35677777888999999999999988877 555567776666554444433  455555677789999988887777777


Q ss_pred             HHhhcCCchhhhHHhHHHHHHHHHHHHHHHHH
Q psy2964         145 VLECVGPKWRTFAMTFPFLIFYTVSEVALPWI  176 (208)
Q Consensus       145 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~  176 (208)
                      ..-..|++.-+.+.++ ......+|+.++..+
T Consensus       430 ~ql~~p~~~ig~a~gL-~~s~R~~GGsIg~aI  460 (599)
T PF06609_consen  430 AQLIVPDEDIGTATGL-TGSIRSIGGSIGYAI  460 (599)
T ss_pred             eEeeeCchHHHHHHHH-HHHHHHHhhHHHHHH
Confidence            7777899999999988 556777777666544

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.72  E-value=0.00088  Score=55.32  Aligned_cols=146  Identities=12%  Similarity=0.044  Sum_probs=93.4

Q ss_pred             eeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhC-----chHHHHHHHHHHHHHHHHHhhhc----cHHHHHH
Q psy2964          55 RRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYG-----RITAVLGSHVVSFLGVALTPFSK----DVVLFSL  125 (208)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G-----rr~~l~~~~~~~~~~~~~~~~~~----~~~~~~~  125 (208)
                      +.+++++   +..+.+...++..+.. ...++.|.++|-+.     ||+-++++.++..++...++..+    +.....+
T Consensus        16 l~~~l~l---s~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~   91 (433)
T PF03092_consen   16 LKDDLGL---SPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVV   91 (433)
T ss_pred             HHHHcCC---CHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHH
Confidence            4445565   4445555544444443 45788999999773     66666667766655555444432    4555556


Q ss_pred             HHHHHhhhhhhHHHHHHHHHHhhc--CCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHH-HH
Q psy2964         126 SRFLTGVGHFNAFIFYYIIVLECV--GPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVG-LI  199 (208)
Q Consensus       126 ~~~l~g~~~~~~~~~~~~~~~e~~--~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~-~~  199 (208)
                      +-++..++........-+...|..  .++.|+...+.+ .....+|.+++..+++.+.   ++++.|.+.+.+..+. +.
T Consensus        92 ~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~-~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~  170 (433)
T PF03092_consen   92 LLFLASFGYAFADVAADALVVELARREPESRGDLQSFV-WGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIV  170 (433)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHH-HHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHH
Confidence            677888888888888999999987  333367777774 3466678888877777665   6777777766554443 33


Q ss_pred             HHhccC
Q psy2964         200 VAIFTP  205 (208)
Q Consensus       200 ~~~~~p  205 (208)
                      ..+..+
T Consensus       171 ~~~~~~  176 (433)
T PF03092_consen  171 ALFLLE  176 (433)
T ss_pred             HHHhhh
Confidence            344444

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.67  E-value=0.0051  Score=51.58  Aligned_cols=113  Identities=16%  Similarity=0.079  Sum_probs=80.4

Q ss_pred             hHHHHHHHHHHHHHhHHHHHHHhhhhhCc--hH----H-HHHHHHHHHHHHHHHhhh---------ccHHHHHHHHHHHh
Q psy2964          68 NLAITRSIFFLGSLLGGFILSWVADRYGR--IT----A-VLGSHVVSFLGVALTPFS---------KDVVLFSLSRFLTG  131 (208)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr--r~----~-l~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~g  131 (208)
                      -.++.+++..+-.++.+++.+++=.|.+|  |.    . +.+++++.+++...+.+.         .+.++++..-++.+
T Consensus       309 p~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t  388 (493)
T PRK15462        309 PTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMG  388 (493)
T ss_pred             CHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHH
Confidence            36777888888777778877777566532  21    1 556777777766554331         25667778888999


Q ss_pred             hhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhh
Q psy2964         132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL  180 (208)
Q Consensus       132 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~  180 (208)
                      +|.-...|...+.+++..|++.|++.+|..+.....+|..++..++...
T Consensus       389 ~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~  437 (493)
T PRK15462        389 FAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQT  437 (493)
T ss_pred             HHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999943323356666665555544

>KOG4686|consensus

Probab=97.64  E-value=4.8e-06  Score=63.83  Aligned_cols=105  Identities=16%  Similarity=0.175  Sum_probs=85.5

Q ss_pred             hHHHHHHHHHHHHHhHHHHHHHhhh-hhCchHHHHHHHHHHHHHHHHHhh---hccHHHHHHHHHHHhhhhhhHHHHHHH
Q psy2964          68 NLAITRSIFFLGSLLGGFILSWVAD-RYGRITAVLGSHVVSFLGVALTPF---SKDVVLFSLSRFLTGVGHFNAFIFYYI  143 (208)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~g~l~d-r~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~g~~~~~~~~~~~~  143 (208)
                      +..++.++|...+.+.++++|++.| |+|-|...++-+....++..+.+.   .+.+|.+.++|++.|+|.-..-...+.
T Consensus        80 kftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~  159 (459)
T KOG4686|consen   80 KFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNK  159 (459)
T ss_pred             eeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcc
Confidence            4556778899999999999999999 568887777777777777665543   578999999999999988777788889


Q ss_pred             HHHhhcCCchhhhHHhHHHHHHHHHHHHHH
Q psy2964         144 IVLECVGPKWRTFAMTFPFLIFYTVSEVAL  173 (208)
Q Consensus       144 ~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~  173 (208)
                      |+.-++..|+-+.++|+ ..+...+|...-
T Consensus       160 yav~wFKGKELn~vfGl-qlSvAR~GstvN  188 (459)
T KOG4686|consen  160 YAVYWFKGKELNFVFGL-QLSVARLGSTVN  188 (459)
T ss_pred             eeEEEecCccccchhhH-HHHHHHhhceee
Confidence            99999999999999999 555666776553

>KOG2816|consensus

Probab=97.59  E-value=0.0062  Score=50.65  Aligned_cols=119  Identities=12%  Similarity=0.123  Sum_probs=95.2

Q ss_pred             ecccccccCCchHHHHHHHHHHHHHhHHHHHH-HhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhh
Q psy2964          57 RRDNWVCDGSSNLAITRSIFFLGSLLGGFILS-WVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHF  135 (208)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~  135 (208)
                      ..+++   +....+...+.......++.++.. .+...+|-|+.+..|++...+..++.++.++.|.++....+.++.. 
T Consensus       270 ~~f~w---~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~~-  345 (463)
T KOG2816|consen  270 AKFGW---NKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALAG-  345 (463)
T ss_pred             eecCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhc-
Confidence            34555   456667666666666677777666 7788999999999999999999999999999998888887777664 


Q ss_pred             hHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhh
Q psy2964         136 NAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL  180 (208)
Q Consensus       136 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~  180 (208)
                      ...+...+.++.+.++++++++.++ .+....+...++|.+-+.+
T Consensus       346 ~~~pa~~s~~s~~v~~~e~g~v~~~-is~i~~l~~~~~~~~~~~i  389 (463)
T KOG2816|consen  346 IVFPAIRAFASILVSPEEQGKVFGI-ISGIEGLSGVVSPALYGNI  389 (463)
T ss_pred             chhHHHHhHHHhhcccccccchhhH-HHHHHHHhhhhhHHHHHHH
Confidence            4458889999999999999999999 6777777777777666554

>KOG3626|consensus

Probab=97.59  E-value=0.00015  Score=62.61  Aligned_cols=151  Identities=19%  Similarity=0.176  Sum_probs=120.1

Q ss_pred             ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh--------------
Q psy2964          52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS--------------  117 (208)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--------------  117 (208)
                      ..++-+.|++   ++.+.+++.+.+-+++.+...+..+...|.-|-+.+-++.+++++++++..+.              
T Consensus       120 IttiErRF~i---~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~  196 (735)
T KOG3626|consen  120 ITTIERRFKI---SSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVI  196 (735)
T ss_pred             hhhhhhhcCC---CCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhh
Confidence            3445556776   56678999999999999999999999999999889999999999988877651              


Q ss_pred             ------c---------------------------c----HH-HHHHHHHHHhhhhhhHHHHHHHHHHhhcCCchhhhHHh
Q psy2964         118 ------K---------------------------D----VV-LFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMT  159 (208)
Q Consensus       118 ------~---------------------------~----~~-~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~  159 (208)
                            +                           .    ++ .++++.++.|+|....++...+|+=|....++-+..+|
T Consensus       197 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlg  276 (735)
T KOG3626|consen  197 KQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLG  276 (735)
T ss_pred             hccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHH
Confidence                  0                           0    22 45577899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhh----------------------hhHHHHHHHHHHHHHHHHHHhccCC
Q psy2964         160 FPFLIFYTVSEVALPWIAYYLA----------------------DWQWISVITIFPLIVGLIVAIFTPE  206 (208)
Q Consensus       160 ~~~~~~~~~g~~~~~~~~~~~~----------------------~w~~~~~~~~~~~~~~~~~~~~~pe  206 (208)
                      + ......+|.++|.+++++..                      .|+.-|++.+.+.++..+.++++|.
T Consensus       277 i-~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk  344 (735)
T KOG3626|consen  277 I-LYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPK  344 (735)
T ss_pred             H-HHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            9 56677888888888877652                      3555677777777776666666664

>KOG2533|consensus

Probab=97.57  E-value=0.0012  Score=55.25  Aligned_cols=110  Identities=7%  Similarity=-0.025  Sum_probs=70.9

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhh----hCchHHHHHHHHHHHHHHH-HHhhhccHHHHHHHHHHHhhhhhhHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADR----YGRITAVLGSHVVSFLGVA-LTPFSKDVVLFSLSRFLTGVGHFNAFI  139 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~Grr~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~g~~~~~~~~  139 (208)
                      +..+.+.+...+.++.+++.+++|+++||    ..+|..+.....+...... ....................+.....+
T Consensus       307 s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  386 (495)
T KOG2533|consen  307 SELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIATAI  386 (495)
T ss_pred             ChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcchhhHHHHH
Confidence            45566777888999999999999999999    6777776666666555543 333333333333334444455566667


Q ss_pred             HHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHH
Q psy2964         140 FYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALP  174 (208)
Q Consensus       140 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~  174 (208)
                      +.....++....+.|..........+.+.+..++|
T Consensus       387 ~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~  421 (495)
T KOG2533|consen  387 IALSWTSANLAGNTKALTTVSAIIDGTGSAGAISG  421 (495)
T ss_pred             HHHhhccccccchHHhHHHHhhhhcchhHHHHhhh
Confidence            88888888887777766554434444444444443

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.48  E-value=0.00031  Score=43.36  Aligned_cols=52  Identities=17%  Similarity=0.215  Sum_probs=43.6

Q ss_pred             ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHH
Q psy2964          52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVV  106 (208)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~  106 (208)
                      .+...++.++   +..+.+.+.++..+...++++++|.++||+|+++.++.....
T Consensus        23 l~~~~~~~Gl---~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen   23 LPLYLKQLGL---SPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             hhHhhhhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            3445555666   788999999999999999999999999999999988776554

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=97.46  E-value=0.014  Score=47.76  Aligned_cols=124  Identities=12%  Similarity=0.018  Sum_probs=67.6

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHh-----hhccHHHHHHHHHHHhhhhhhHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTP-----FSKDVVLFSLSRFLTGVGHFNAFI  139 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~g~~~~~~~~  139 (208)
                      +....++.......+..++..+.+.+.++.++++.+.....+..++..+..     ..++++...+..++.+++.+...+
T Consensus       252 s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~p  331 (413)
T PRK15403        252 TTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFGIGLIFP  331 (413)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHhH
Confidence            455667776667777788888888776544443333222222222222221     123343455677778888777766


Q ss_pred             HHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHH
Q psy2964         140 FYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA--DWQWISVIT  190 (208)
Q Consensus       140 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~--~w~~~~~~~  190 (208)
                      ......- .-....++++.++ .+.....+...++..++++.  +-.+.+...
T Consensus       332 ~~~~~al-~~~~~~~G~a~a~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  382 (413)
T PRK15403        332 TLFRFTL-FSNNLPKGTVSAS-LNMVILMVMAVSVEIGRWLWFNGGRLPFHLL  382 (413)
T ss_pred             HHHHHHh-ccCCCCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCchHHHHH
Confidence            6664332 1122246777776 45455556666666766664  333444443

>KOG3098|consensus

Probab=97.45  E-value=0.0024  Score=52.76  Aligned_cols=103  Identities=10%  Similarity=-0.094  Sum_probs=83.7

Q ss_pred             HHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCc
Q psy2964          73 RSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPK  152 (208)
Q Consensus        73 ~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~  152 (208)
                      +++.+....+.+++++.+.|+.|+|+.+.++............. .|-+.+++...+.|+|.+..+.....|++|-.+++
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~  134 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE  134 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence            67778888999999999999999999999999988877665555 45666888999999999998888999999999999


Q ss_pred             hhhhHHhHHHHHHHHHHHHHHHHHH
Q psy2964         153 WRTFAMTFPFLIFYTVSEVALPWIA  177 (208)
Q Consensus       153 ~r~~~~~~~~~~~~~~g~~~~~~~~  177 (208)
                      ++.+..++.|+ ....+.++|..+.
T Consensus       135 tie~Nisi~Wa-i~~~~li~Ggi~l  158 (461)
T KOG3098|consen  135 TIERNISIFWA-IGQSSLIIGGIIL  158 (461)
T ss_pred             hHHHHHHHHHH-HHHHHHHhhhHhh
Confidence            99999888555 3334455554443

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.41  E-value=0.0029  Score=51.07  Aligned_cols=104  Identities=19%  Similarity=0.207  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhh--c-------cHHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCc---hhhhHHhHHHHHH
Q psy2964          98 TAVLGSHVVSFLGVALTPFS--K-------DVVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPK---WRTFAMTFPFLIF  165 (208)
Q Consensus        98 ~~l~~~~~~~~~~~~~~~~~--~-------~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~---~r~~~~~~~~~~~  165 (208)
                      +++.++.++..+++.+..++  +       +.+.++++-.+.++|.|..=+...++.+|.++++   +|.....+ +-.+
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~-fY~~   80 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNW-FYWG   80 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHH-HHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHH-HHHH
Confidence            46778888888888774443  1       2357788888999999999999999999999766   34445555 4557


Q ss_pred             HHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHh
Q psy2964         166 YTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIVAI  202 (208)
Q Consensus       166 ~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~  202 (208)
                      ..+|..+++....++.   +|.+.|.+.++..+++++...
T Consensus        81 in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~  120 (372)
T PF00854_consen   81 INIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFL  120 (372)
T ss_dssp             HHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHH
Confidence            7788888887777776   888888888777766555443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG2615|consensus

Probab=97.39  E-value=0.0012  Score=52.83  Aligned_cols=123  Identities=15%  Similarity=0.083  Sum_probs=98.8

Q ss_pred             ecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhC--chHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhh
Q psy2964          57 RRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYG--RITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGH  134 (208)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~  134 (208)
                      ..+++   ++.++|...+...+.+.+.+....+..||..  -+-.+..++.++.=..++....+....+..+-.+-.+..
T Consensus       290 ~rfg~---ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~  366 (451)
T KOG2615|consen  290 GRFGY---SSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFST  366 (451)
T ss_pred             CccCC---ChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHH
Confidence            34454   5667777777778888888888888888887  666777776666666666677777777888888888888


Q ss_pred             hhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhhhh
Q psy2964         135 FNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLADW  183 (208)
Q Consensus       135 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~w  183 (208)
                      +...++...++....|.++|+..+|+ ......++-.+||.+++.+..|
T Consensus       367 A~~vt~Lt~Lv~~~~~~~qrG~~~Gi-~~Sl~alaRaiGPlv~g~i~~W  414 (451)
T KOG2615|consen  367 ASVVTCLTSLVHKYGPQSQRGTLNGI-FRSLGALARAIGPLVSGVIFSW  414 (451)
T ss_pred             HHhhHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHhhhhhhheeEEE
Confidence            88889999999999999999999999 6668889999999999876533

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=97.35  E-value=0.0046  Score=50.17  Aligned_cols=102  Identities=18%  Similarity=0.083  Sum_probs=73.6

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHH-HHHHHhhhcc--HH-HHHHHHHHHhhhhhhHHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFL-GVALTPFSKD--VV-LFSLSRFLTGVGHFNAFIF  140 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~-~~~~~~~~~~--~~-~~~~~~~l~g~~~~~~~~~  140 (208)
                      ++...+...++..+..++.+++.|.++|+.|+|+..........+ +.+++.+.++  ++ .....-.+...+.......
T Consensus        56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf  135 (438)
T COG2270          56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF  135 (438)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence            345667778888888899999999999999988776655444444 4444555543  44 3444556777777777888


Q ss_pred             HHHHHHhhcCCchhhhHHhHHHHHHH
Q psy2964         141 YYIIVLECVGPKWRTFAMTFPFLIFY  166 (208)
Q Consensus       141 ~~~~~~e~~~~~~r~~~~~~~~~~~~  166 (208)
                      ..+++.+..++++-++.-++.+..++
T Consensus       136 yds~L~~~~~k~~~~riS~lg~~~gy  161 (438)
T COG2270         136 YDSMLPRLTTKDNMGRISGLGWALGY  161 (438)
T ss_pred             hhhHhhhhcCccccCccccccccccc
Confidence            99999999998888877777666544

>PTZ00207 hypothetical protein; Provisional

Probab=97.28  E-value=0.015  Score=49.93  Aligned_cols=125  Identities=10%  Similarity=0.019  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHhHHHHHHHhhh---h------hCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHH
Q psy2964          72 TRSIFFLGSLLGGFILSWVAD---R------YGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYY  142 (208)
Q Consensus        72 ~~~~~~~~~~~~~~~~g~l~d---r------~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  142 (208)
                      +++++.+++.+|.+..|.+..   |      +.|--.+.+..+ +.++.+++.+.-....+.+..++.|++.|...++..
T Consensus       396 ~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~  474 (591)
T PTZ00207        396 LTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIA  474 (591)
T ss_pred             ehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHH
Confidence            678899999999999998872   1      222223333333 555555555553336788999999999999999999


Q ss_pred             HHHHhhcCCchhhhHHhHHHHHHHHHHHHHH-HHHHHhhh-------------h---hHHHHHHHHHHHHHHHH
Q psy2964         143 IIVLECVGPKWRTFAMTFPFLIFYTVSEVAL-PWIAYYLA-------------D---WQWISVITIFPLIVGLI  199 (208)
Q Consensus       143 ~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~-~~~~~~~~-------------~---w~~~~~~~~~~~~~~~~  199 (208)
                      ..++|+|. |+-++-..+ ......+|..+- ..+.+.+.             |   ++..|++.+..++.+.+
T Consensus       475 ~i~selFg-k~~g~~yN~-~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~  546 (591)
T PTZ00207        475 LVTRTIFA-KDPAKHYNF-CFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFI  546 (591)
T ss_pred             HHHHHHhc-cchHHHhhH-HhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHH
Confidence            99999999 888888777 344555665553 33444332             1   56677777666655444

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.24  E-value=0.042  Score=45.89  Aligned_cols=113  Identities=8%  Similarity=-0.028  Sum_probs=79.1

Q ss_pred             chHHHHHHHHHHHHHhH-HHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh--c-------------------------
Q psy2964          67 SNLAITRSIFFLGSLLG-GFILSWVADRYGRITAVLGSHVVSFLGVALTPFS--K-------------------------  118 (208)
Q Consensus        67 ~~~~~~~~~~~~~~~~~-~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~-------------------------  118 (208)
                      ....++-+...+...+. .++.+++++|++|++.+-...........+.++.  +                         
T Consensus        43 e~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~  122 (472)
T TIGR00769        43 EIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGF  122 (472)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHH
Confidence            45666666666666555 8899999999999999887776666665554443  1                         


Q ss_pred             ----cHHHHHHHHHHHhhhhhhHHH-HHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhh
Q psy2964         119 ----DVVLFSLSRFLTGVGHFNAFI-FYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL  180 (208)
Q Consensus       119 ----~~~~~~~~~~l~g~~~~~~~~-~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~  180 (208)
                          +.|...+.-...-+-.....+ .-|.+.+|.+..++-.+..++ ++.+.++|..+++.+..++
T Consensus       123 i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l-~~~ganlg~i~sg~~~~~~  188 (472)
T TIGR00769       123 IAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYAL-FGLGANVALIFSGRTIKYF  188 (472)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence                012222222333344444454 789999999999999999988 7888889999988777665

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.19  E-value=0.0096  Score=49.23  Aligned_cols=141  Identities=13%  Similarity=0.091  Sum_probs=97.2

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhh-h---------ccHHHHHHHHHHHhhhh
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPF-S---------KDVVLFSLSRFLTGVGH  134 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~l~g~~~  134 (208)
                      ++...+....+..++..+|..++....-++.-|+++.++.++.++..+.... .         ++.+..+.--++..+..
T Consensus       253 s~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~  332 (433)
T PF03092_consen  253 SPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIG  332 (433)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHH
Confidence            3445666667778888889999988888888899988888877766553221 1         12222233345666666


Q ss_pred             hhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh--------h---hHHHHHHHHHHHHHHHHHHhc
Q psy2964         135 FNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA--------D---WQWISVITIFPLIVGLIVAIF  203 (208)
Q Consensus       135 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~--------~---w~~~~~~~~~~~~~~~~~~~~  203 (208)
                      ...+.....+++|..|+..-++..++ .....++|..++..++..+.        +   -.+..++..+..++.+...++
T Consensus       333 ~i~~mP~lvl~a~lcP~G~Egt~yal-l~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~l  411 (433)
T PF03092_consen  333 MIAFMPSLVLAARLCPKGSEGTVYAL-LASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLFL  411 (433)
T ss_pred             HHHHHHHHHHHHHHCCCCchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence            66677778899999999999999999 67778888888777777664        1   223444555555556666666


Q ss_pred             cCC
Q psy2964         204 TPE  206 (208)
Q Consensus       204 ~pe  206 (208)
                      +|+
T Consensus       412 Lp~  414 (433)
T PF03092_consen  412 LPP  414 (433)
T ss_pred             cCC
Confidence            665

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG4332|consensus

Probab=97.06  E-value=0.0026  Score=48.82  Aligned_cols=87  Identities=21%  Similarity=0.225  Sum_probs=62.8

Q ss_pred             eeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhh
Q psy2964          55 RRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGH  134 (208)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~  134 (208)
                      +.+.+++   .+.+++.+...-.-..++...+.|.+.||.|||+.-+.-++...++ ++.-.++++-.++++|.+-|+..
T Consensus        63 LYstYgF---gkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLs-CiTKhSpqYkVLmVGR~LGGiaT  138 (454)
T KOG4332|consen   63 LYSTYGF---GKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILS-CITKHSPQYKVLMVGRVLGGIAT  138 (454)
T ss_pred             eehhcCc---cCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHH-HHhhcCCceEEEeehhhhhhHHH
Confidence            3444554   3455555544444556778888999999999999876666555554 34666788999999999999999


Q ss_pred             hhHHHHHHHHH
Q psy2964         135 FNAFIFYYIIV  145 (208)
Q Consensus       135 ~~~~~~~~~~~  145 (208)
                      +..+..--++.
T Consensus       139 sLLFSaFEsWl  149 (454)
T KOG4332|consen  139 SLLFSAFESWL  149 (454)
T ss_pred             HHHHHHHHHHH
Confidence            88877665554

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=96.60  E-value=0.035  Score=45.23  Aligned_cols=110  Identities=13%  Similarity=0.106  Sum_probs=77.1

Q ss_pred             chHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHH-----HHHHhhhccHHHHHHHHHHHhhhhhhHHHHH
Q psy2964          67 SNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLG-----VALTPFSKDVVLFSLSRFLTGVGHFNAFIFY  141 (208)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~  141 (208)
                      ++..+....|++|..++.--...+  |+  |+..+.+.+-..-.     ..+.-+.++.|..++.-+..|+..|..+...
T Consensus       281 ~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNt  356 (402)
T PF02487_consen  281 DQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNT  356 (402)
T ss_pred             HHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHH
Confidence            456677788888877765433221  33  33333322222211     1223335788888889999999999999999


Q ss_pred             HHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh
Q psy2964         142 YIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA  181 (208)
Q Consensus       142 ~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~  181 (208)
                      ...+.|-.|+++|-.++|. .+++-.+|..++.+++..+.
T Consensus       357 F~~I~~~~~~~~REFslg~-vsvsds~GI~lAgll~l~le  395 (402)
T PF02487_consen  357 FYRISEEVPPEDREFSLGA-VSVSDSLGILLAGLLGLPLE  395 (402)
T ss_pred             HHHHHhcCCHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHH
Confidence            9999999999999999999 78788888888877777664

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG0637|consensus

Probab=96.48  E-value=0.0042  Score=50.88  Aligned_cols=107  Identities=21%  Similarity=0.218  Sum_probs=74.3

Q ss_pred             HHHHHHHHhHHHHHHHhhh----hhCchHHHHHH-HHHHHHHHHHHhhhccH-----------------HHHHHHHHHHh
Q psy2964          74 SIFFLGSLLGGFILSWVAD----RYGRITAVLGS-HVVSFLGVALTPFSKDV-----------------VLFSLSRFLTG  131 (208)
Q Consensus        74 ~~~~~~~~~~~~~~g~l~d----r~Grr~~l~~~-~~~~~~~~~~~~~~~~~-----------------~~~~~~~~l~g  131 (208)
                      ...-+...+.+++.|..+|    |||||+.+++. .....++.+++++++..                 ...++...+.-
T Consensus        74 ~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD  153 (498)
T KOG0637|consen   74 LCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLD  153 (498)
T ss_pred             cccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHH
Confidence            3344556788899999999    78988776654 44455555566654322                 22333344445


Q ss_pred             hhhhhHHHHHHHHHHhhcCCchhhh-HHhHHHHHHHHHHHHHHHHHHHhhh
Q psy2964         132 VGHFNAFIFYYIIVLECVGPKWRTF-AMTFPFLIFYTVSEVALPWIAYYLA  181 (208)
Q Consensus       132 ~~~~~~~~~~~~~~~e~~~~~~r~~-~~~~~~~~~~~~g~~~~~~~~~~~~  181 (208)
                      ++........-+++.|+..++.|.+ +.+. +....++|+.+|..++.+..
T Consensus       154 ~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~-f~~f~avGnvLGY~~g~y~~  203 (498)
T KOG0637|consen  154 VANNTLQGPCRALLADLARGDAKKTRANSV-FSFFMAVGNVLGYALGSYLG  203 (498)
T ss_pred             hhhhhhhhhHHHHHHHhccChhhhhccchh-HHHHHHhcceeeeecccccC
Confidence            5666677888899999998877777 8877 78888999999988887653

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.43  E-value=0.27  Score=40.71  Aligned_cols=114  Identities=20%  Similarity=0.147  Sum_probs=77.7

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh---c-------cHHHHHHHHHHHhhhh
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS---K-------DVVLFSLSRFLTGVGH  134 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~-------~~~~~~~~~~l~g~~~  134 (208)
                      +....+..-+...+....+.+.+.++.+|+|..+.=.++......+..+...+   +       +...++.+-.+.-+|.
T Consensus       291 s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GL  370 (432)
T PF06963_consen  291 SPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGL  370 (432)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHH
Confidence            55667888888888899999999999999999998888877666555443321   1       1222333333333444


Q ss_pred             hhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHh
Q psy2964         135 FNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYY  179 (208)
Q Consensus       135 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~  179 (208)
                      =....+...++.|..|+++|+...|. ......+...+...+...
T Consensus       371 W~fDL~~~qi~Qe~V~~~~Rg~v~gv-q~sl~~lf~ll~~~~~ii  414 (432)
T PF06963_consen  371 WSFDLAVTQIMQENVPESERGAVSGV-QNSLQSLFELLSFVLTII  414 (432)
T ss_pred             HhhhHHHHHhhcccCCHHHhhHHHHH-HHHHHHHHHHHHHHHHhc
Confidence            44457778888999999999999988 554555555554444433

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=96.40  E-value=0.19  Score=41.99  Aligned_cols=111  Identities=17%  Similarity=0.105  Sum_probs=81.6

Q ss_pred             chHHHHHHHHHHHHHhHHHHHHHhhhhhCch---H----HHHHHHHHHHHHHHHHhhh----------ccHHHHHHHHHH
Q psy2964          67 SNLAITRSIFFLGSLLGGFILSWVADRYGRI---T----AVLGSHVVSFLGVALTPFS----------KDVVLFSLSRFL  129 (208)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr---~----~l~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l  129 (208)
                      ....+.++...+..++.+++..++-.|.++|   +    =+-++..+.+.+.++....          .+.++++..-++
T Consensus       324 vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l  403 (498)
T COG3104         324 VPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVL  403 (498)
T ss_pred             cCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHH
Confidence            3467788888888888898888888885554   1    1234444444444333322          256788888899


Q ss_pred             HhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHH
Q psy2964         130 TGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAY  178 (208)
Q Consensus       130 ~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~  178 (208)
                      ++++.=...|....+++...|++-.+..++. +-.....|+.++..++.
T Consensus       404 ~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~-wfLt~a~~~~l~g~va~  451 (498)
T COG3104         404 QSFGELFISPVGLSMVTKLAPPALKSFIMAM-WFLTVAAGQTLGGQVAG  451 (498)
T ss_pred             HHHHHHHhCHHHHHHHHHhChHHHHHHHHHH-HHHHHHHHHHhhceecc
Confidence            9999999999999999999999999999998 66677777777665555

>PRK03612 spermidine synthase; Provisional

Probab=95.98  E-value=0.57  Score=39.88  Aligned_cols=114  Identities=6%  Similarity=-0.032  Sum_probs=56.8

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHH-HH-HHHHHHHhhhc----cH-HHHHHHHHHHhhhhhhH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHV-VS-FLGVALTPFSK----DV-VLFSLSRFLTGVGHFNA  137 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~-~~-~~~~~~~~~~~----~~-~~~~~~~~l~g~~~~~~  137 (208)
                      +....+.+.+++++|..+|+.+.+++.++.-|+....-..+ +. .++..+.....    .. ..++...++.++..|+.
T Consensus        48 s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~  127 (521)
T PRK03612         48 SVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLIGME  127 (521)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456778899999999999998887644333332221111 10 11111111111    11 11223345667777777


Q ss_pred             HHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhh
Q psy2964         138 FIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYL  180 (208)
Q Consensus       138 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~  180 (208)
                      +|....+..+.... +-+...|-.+. ...+|..+|.++.+++
T Consensus       128 ~Pl~~~~~~~~~~~-~~g~~~g~ly~-~ntlGa~~G~l~~~~v  168 (521)
T PRK03612        128 IPLLMRILQRIRDQ-HLGHNVATVLA-ADYLGALVGGLAFPFL  168 (521)
T ss_pred             HHHHHHHHHhcccc-chhhhhhhhHh-HHhHHHHHHHHHHHHH
Confidence            77766666554321 12233334233 4456666666665554

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=95.86  E-value=0.26  Score=40.34  Aligned_cols=120  Identities=15%  Similarity=0.035  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q psy2964          69 LAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIVLEC  148 (208)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~  148 (208)
                      .+.+.-+-.+...+..+.+.+..+|..-+.=+....++..++.++.+++++.+.-+++-.+.+++.|..-.....+ +..
T Consensus        61 t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~l-t~~  139 (402)
T PF02487_consen   61 TGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSL-THF  139 (402)
T ss_pred             chHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHH-HHh
Confidence            3444445555667777788888888875555566666777788888888999988888899999988886666565 445


Q ss_pred             cCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHH
Q psy2964         149 VGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA----DWQWISVITIFPL  194 (208)
Q Consensus       149 ~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~~  194 (208)
                      +++.    .++- ++.+.+.++++|+..-..+.    +-|..+.+...+.
T Consensus       140 y~~~----~l~~-wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp  184 (402)
T PF02487_consen  140 YGKS----SLSA-WSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLP  184 (402)
T ss_pred             cCcc----cccc-ccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence            5542    2333 56666666666655444333    3344555544433

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG1330|consensus

Probab=95.75  E-value=0.027  Score=46.43  Aligned_cols=116  Identities=22%  Similarity=0.196  Sum_probs=66.6

Q ss_pred             CchHHHHHHHHHHHHHhHHHHHHHhhhhhC-------chHHHHHHHHHHHHHHHHH----hh-hccHHHHHHHHHHHhhh
Q psy2964          66 SSNLAITRSIFFLGSLLGGFILSWVADRYG-------RITAVLGSHVVSFLGVALT----PF-SKDVVLFSLSRFLTGVG  133 (208)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G-------rr~~l~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~l~g~~  133 (208)
                      .....++..++..+..+|.+++|.++||+-       |.++=.+...+.+..++.+    .. ..+...+....++.|..
T Consensus       282 ~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~  361 (493)
T KOG1330|consen  282 HNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGET  361 (493)
T ss_pred             cccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            344556678888899999999999999842       2222222222222222111    11 12222222333344432


Q ss_pred             hh-hHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh
Q psy2964         134 HF-NAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA  181 (208)
Q Consensus       134 ~~-~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~  181 (208)
                      .. ...+....+..|..|++.|..+.++-......+|-.-+|.+.+.+.
T Consensus       362 ~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGils  410 (493)
T KOG1330|consen  362 ISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILS  410 (493)
T ss_pred             HHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHH
Confidence            22 2234455667888899999999998666666667666775656554

>KOG3098|consensus

Probab=95.70  E-value=1  Score=37.58  Aligned_cols=101  Identities=26%  Similarity=0.373  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHhh---hhhCchHHHHHHHHHHHHHHHHHhhh------------------ccHHHHHHHH
Q psy2964          69 LAITRSIFFLGSLLGGFILSWVA---DRYGRITAVLGSHVVSFLGVALTPFS------------------KDVVLFSLSR  127 (208)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~g~l~---dr~Grr~~l~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~  127 (208)
                      .+.......++..+++...+.++   +++||++.+..+..+..+..++..+.                  +++...++.-
T Consensus       281 ~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~  360 (461)
T KOG3098|consen  281 IAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIG  360 (461)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHH
Confidence            33334444555666667777776   57899999999988888887765542                  2355666777


Q ss_pred             HHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHH
Q psy2964         128 FLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEV  171 (208)
Q Consensus       128 ~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~  171 (208)
                      ++.|++-+......+.++.... ++.|..+.++ .-.-..++..
T Consensus       361 ~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi-~kfyq~~~s~  402 (461)
T KOG3098|consen  361 FLLGFGDACFNTQRYVIIALLY-PDDRAQAFSL-FKFYQSVASC  402 (461)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHH-HHHHHHHHHH
Confidence            8999999999899999999999 6667777766 3433334433

>KOG1237|consensus

Probab=95.56  E-value=0.16  Score=43.60  Aligned_cols=132  Identities=14%  Similarity=0.122  Sum_probs=88.5

Q ss_pred             hHHHHHHHHHHHHHhHHHHHHHhhh-hhCchHHHHHHHHHHHHHHHHHhhhc----------------------c---HH
Q psy2964          68 NLAITRSIFFLGSLLGGFILSWVAD-RYGRITAVLGSHVVSFLGVALTPFSK----------------------D---VV  121 (208)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~g~l~d-r~Grr~~l~~~~~~~~~~~~~~~~~~----------------------~---~~  121 (208)
                      .+.-....+.-......+.+++++| .+||-+++.++.++..++..+...+.                      +   ..
T Consensus        74 ~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~  153 (571)
T KOG1237|consen   74 GAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLA  153 (571)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHH
Confidence            3444455555566677889999999 66999999999998888865443320                      0   12


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHhhcC---Cchhh---hHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHH
Q psy2964         122 LFSLSRFLTGVGHFNAFIFYYIIVLECVG---PKWRT---FAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIF  192 (208)
Q Consensus       122 ~~~~~~~l~g~~~~~~~~~~~~~~~e~~~---~~~r~---~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~  192 (208)
                      .+....-+..+|.|+.-++...+-+|.++   ++.+.   ..+.. +......|..++..+..+..   +|.+.|.+..+
T Consensus       154 ~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW-~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~  232 (571)
T KOG1237|consen  154 VLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNW-FYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTV  232 (571)
T ss_pred             HHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhH-HHHHHHHHHHHHHHHHHhhhhcccceeeccHHHH
Confidence            44455567777888888999999999998   33222   33344 34455667777666666663   89988888766


Q ss_pred             HHHHHHHH
Q psy2964         193 PLIVGLIV  200 (208)
Q Consensus       193 ~~~~~~~~  200 (208)
                      ...+++++
T Consensus       233 ~~~lai~i  240 (571)
T KOG1237|consen  233 LNALAILI  240 (571)
T ss_pred             HHHHHHHH
Confidence            65554443

>KOG3762|consensus

Probab=94.09  E-value=0.057  Score=45.46  Aligned_cols=63  Identities=14%  Similarity=0.141  Sum_probs=47.9

Q ss_pred             ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHH-HHHHHhhh
Q psy2964          52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFL-GVALTPFS  117 (208)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~-~~~~~~~~  117 (208)
                      +..+..+.++   +..+.+.++..--+..+++.+++|+++||+-+|+.++++.++..+ ..+++.+.
T Consensus        34 l~vy~kQLGl---~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~fv   97 (618)
T KOG3762|consen   34 LAVYFKQLGL---NPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVFV   97 (618)
T ss_pred             HHHHHHHcCC---CHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheeec
Confidence            4556667777   788899999999999999999999999999887766665555444 44444443

>KOG1479|consensus

Probab=93.44  E-value=0.55  Score=38.36  Aligned_cols=110  Identities=11%  Similarity=0.038  Sum_probs=69.2

Q ss_pred             CchHHHHHHH-HHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHh---------hhccHHHHHHHHHHHhhhhh
Q psy2964          66 SSNLAITRSI-FFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTP---------FSKDVVLFSLSRFLTGVGHF  135 (208)
Q Consensus        66 ~~~~~~~~~~-~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~g~~~~  135 (208)
                      ++........ +++.-.+|.+.+.++-+.= ||...+... +-.+..-+..         ...+-+.+++...+.|+..|
T Consensus       281 ~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l~i~v~-lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnG  358 (406)
T KOG1479|consen  281 DWYALLLVFLSFNVFDLIGSILAALLTWPD-PRKLTIPVL-LRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNG  358 (406)
T ss_pred             hhhHHHHHHHHhHHHHHhhhhhhhcccCCC-CceehHHHH-HHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccc
Confidence            3445555566 8888888877777665543 333333322 2222211111         22455677788899999999


Q ss_pred             hHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHH
Q psy2964         136 NAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAY  178 (208)
Q Consensus       136 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~  178 (208)
                      -...+...+..+..+++++..+-.+ .......|...|..++.
T Consensus       359 Yltsl~m~~aPk~v~~~e~e~aG~~-m~~fl~~Gl~~G~~~s~  400 (406)
T KOG1479|consen  359 YLTSLIMMYAPKQVKPSEKEAAGNL-MVFFLVGGLALGSLLSW  400 (406)
T ss_pred             hHhhheehhcCCCCChHHHHHHHHH-HHHHHHHHHHHhhHHHH
Confidence            9999999999999988888776444 55555555555544443

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=93.31  E-value=2.6  Score=34.70  Aligned_cols=96  Identities=6%  Similarity=-0.008  Sum_probs=70.5

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHH--HHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVL--GSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYY  142 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  142 (208)
                      .....|.+-++..+...++.+..|++..++.+..-+.  ...++.+...+++...++.|...++-.+.+.......+...
T Consensus       283 ~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~  362 (412)
T PF01770_consen  283 ESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIAS  362 (412)
T ss_pred             CcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556788888999999999999999977777744444  33444455556677788999888888777776667777777


Q ss_pred             HHHHhhcCCchhhhHHhH
Q psy2964         143 IIVLECVGPKWRTFAMTF  160 (208)
Q Consensus       143 ~~~~e~~~~~~r~~~~~~  160 (208)
                      .-++.....+.-+...|+
T Consensus       363 ~qIA~~l~~e~yaLVFGi  380 (412)
T PF01770_consen  363 FQIAKNLSEERYALVFGI  380 (412)
T ss_pred             HHHHHhccccceeeeeee
Confidence            777777776766666555

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG3810|consensus

Probab=93.03  E-value=0.36  Score=38.71  Aligned_cols=120  Identities=15%  Similarity=0.203  Sum_probs=83.8

Q ss_pred             HHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHH
Q psy2964          85 FILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLI  164 (208)
Q Consensus        85 ~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~  164 (208)
                      .+.=.+.|..--||+++.-.+.......+..+.++.+.+=+.-+..|...+.. ...++|+-+..+++.+.++.+.+-+ 
T Consensus        60 vpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAaE-IAYysYIYs~Vd~~~Yqrvt~y~Ra-  137 (433)
T KOG3810|consen   60 VPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAAE-IAYYSYIYSKVDPEMYKRVTGYCRA-  137 (433)
T ss_pred             HHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHHH-HhhhheeeeecCHHHHHHHHHHhHH-
Confidence            33346789888899998888877777788888899998888999999887776 6778999999999999998887433 


Q ss_pred             HHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHHHHHHhccCC
Q psy2964         165 FYTVSEVALPWIAYYLA-----DWQWISVITIFPLIVGLIVAIFTPE  206 (208)
Q Consensus       165 ~~~~g~~~~~~~~~~~~-----~w~~~~~~~~~~~~~~~~~~~~~pe  206 (208)
                      ..-.|...+..++-.+.     ++...-++......++.+..+++|.
T Consensus       138 A~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~  184 (433)
T KOG3810|consen  138 AFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPR  184 (433)
T ss_pred             HHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCC
Confidence            44455555555554443     3333333443344445555555554

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=92.55  E-value=2.8  Score=32.26  Aligned_cols=101  Identities=19%  Similarity=0.240  Sum_probs=57.8

Q ss_pred             hHHHHHHHHHHHHHhHHHHHHHhhh-hhCchHHHHH----HHHHHHHHHHHHhh-h----ccHHHHHHHHHHHhhhhhhH
Q psy2964          68 NLAITRSIFFLGSLLGGFILSWVAD-RYGRITAVLG----SHVVSFLGVALTPF-S----KDVVLFSLSRFLTGVGHFNA  137 (208)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~g~l~d-r~Grr~~l~~----~~~~~~~~~~~~~~-~----~~~~~~~~~~~l~g~~~~~~  137 (208)
                      .......++..|..+|.+..|+... ++-||+-+..    +.++..++.+..+. .    .+...+.+..++.|++.=+.
T Consensus       142 ~~~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~Wgi  221 (267)
T PF07672_consen  142 IIPIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGI  221 (267)
T ss_pred             hhHHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhh
Confidence            3456667788888888888888875 6677776552    23333333332111 1    13556677778888776555


Q ss_pred             HHHHHHHHHhhc--CCchhhhHHhHHHHHHHHHHHHH
Q psy2964         138 FIFYYIIVLECV--GPKWRTFAMTFPFLIFYTVSEVA  172 (208)
Q Consensus       138 ~~~~~~~~~e~~--~~~~r~~~~~~~~~~~~~~g~~~  172 (208)
                      .+.......|.-  .|++-    |+.++..|++|.+.
T Consensus       222 Q~ViL~lPhEyK~~~pk~i----g~~Fg~iWGfGY~~  254 (267)
T PF07672_consen  222 QGVILNLPHEYKGYNPKKI----GIQFGLIWGFGYIF  254 (267)
T ss_pred             hHHHhcChhhhcCCCccee----hhHHHHHHHHHHHH
Confidence            555544445542  33333    34455566666544

>KOG3880|consensus

Probab=91.08  E-value=1.7  Score=34.49  Aligned_cols=113  Identities=15%  Similarity=0.152  Sum_probs=75.1

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchH------HHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRIT------AVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAF  138 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~  138 (208)
                      ...+..|.+..|.+|..+..-     +-|+=+-+      .+..--++..+...+..+.++++..++..+.-|+-.|..+
T Consensus       286 ~~sqYRwyqvlYQlGVFiSRS-----S~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasY  360 (409)
T KOG3880|consen  286 KDSQYRWYQVLYQLGVFISRS-----SINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASY  360 (409)
T ss_pred             hhhcchhhheeeeeeEEEEec-----cceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHH
Confidence            445677888888888765432     11221212      2222233334444566778899999999999998888887


Q ss_pred             HHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhhhh
Q psy2964         139 IFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLADW  183 (208)
Q Consensus       139 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~w  183 (208)
                      ....--+.+-.++++|-.+++. ...+-.+|..++.+++..+.+|
T Consensus       361 VNTf~~i~~e~~pd~rEfamsa-vs~sDS~Gi~lA~~lalplh~~  404 (409)
T KOG3880|consen  361 VNTFHNIHKETEPDVREFAMSA-VSISDSIGIFLAGLLALPLHNW  404 (409)
T ss_pred             HHHHHHHhhcCCchHHHHhHhh-heecchhhHHHHHHHhccchhh
Confidence            7777777887889999999987 5666666766666665544343

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=90.07  E-value=6.4  Score=32.82  Aligned_cols=109  Identities=18%  Similarity=0.058  Sum_probs=67.8

Q ss_pred             hHHHHHHHHHHHHHhHHHHHHHhhhhhCch--HHHHHHH--HHHHHHHHHHh---------hhccHHHHHHHHHHHhhhh
Q psy2964          68 NLAITRSIFFLGSLLGGFILSWVADRYGRI--TAVLGSH--VVSFLGVALTP---------FSKDVVLFSLSRFLTGVGH  134 (208)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr--~~l~~~~--~~~~~~~~~~~---------~~~~~~~~~~~~~l~g~~~  134 (208)
                      .......+++++=.+|..+..+.. .-++|  ...+.+.  ++..-..+++.         ..++-+..++..++.|+..
T Consensus       308 ~~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltn  386 (437)
T TIGR00939       308 YPIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSN  386 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhh
Confidence            445666778888888888655431 11222  3322221  11222212221         1245566777889999999


Q ss_pred             hhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHH
Q psy2964         135 FNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAY  178 (208)
Q Consensus       135 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~  178 (208)
                      |........+..+..++++|..+-.+ ...+..+|..+|..++.
T Consensus       387 Gy~~s~~m~~~p~~v~~~e~e~aG~~-~~~~l~~Gl~~Gs~l~~  429 (437)
T TIGR00939       387 GYLGSLSMCLAPRQVDPHEREVAGAL-MVIFLLVGLALGAVLSF  429 (437)
T ss_pred             hHHHHHHHHhcCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            99999999999999998888777555 56666666666655544

>TIGR00806 rfc RFC reduced folate carrier

Probab=89.59  E-value=5.1  Score=33.93  Aligned_cols=93  Identities=11%  Similarity=-0.010  Sum_probs=72.1

Q ss_pred             hHHHHHHHHHHHHHhHHHHHHHhhhhhCch--HHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHHH
Q psy2964          68 NLAITRSIFFLGSLLGGFILSWVADRYGRI--TAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIV  145 (208)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  145 (208)
                      ..|..-++..+...+.++..|++-.++.+-  ..+-+..++.+...+++...+|.|...++-++.+.......++...-+
T Consensus       299 yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~i  378 (511)
T TIGR00806       299 YNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQI  378 (511)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            667777888888899999999998777553  344444455555566777889999999999888888888888888888


Q ss_pred             HhhcCCchhhhHHhH
Q psy2964         146 LECVGPKWRTFAMTF  160 (208)
Q Consensus       146 ~e~~~~~~r~~~~~~  160 (208)
                      +.....+.-+...|+
T Consensus       379 A~~L~~~~~aLvFGi  393 (511)
T TIGR00806       379 ASSLSKELCALVFGI  393 (511)
T ss_pred             HHHhcccceEEEEec
Confidence            888877777777666

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG2563|consensus

Probab=89.34  E-value=0.63  Score=38.54  Aligned_cols=93  Identities=12%  Similarity=0.077  Sum_probs=59.0

Q ss_pred             chHHHHHHHHHHHHHhHHHHHHHhhhhhCc-hHHHHHHHHHHHHHHHHHhh-h---ccHHHHHHHHHHHhhhhhhHHHHH
Q psy2964          67 SNLAITRSIFFLGSLLGGFILSWVADRYGR-ITAVLGSHVVSFLGVALTPF-S---KDVVLFSLSRFLTGVGHFNAFIFY  141 (208)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~l~g~~~~~~~~~~  141 (208)
                      ...|+......++.++++.+.|.+.||... |..++.......++...... .   ...+.++..-.+.|++.....|+.
T Consensus       301 ~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig  380 (480)
T KOG2563|consen  301 VFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIG  380 (480)
T ss_pred             cccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcc
Confidence            567888888889999999999999998865 44555555554444222111 1   122334444556676666667887


Q ss_pred             HHHHHhhc-CCchhhhHHhH
Q psy2964         142 YIIVLECV-GPKWRTFAMTF  160 (208)
Q Consensus       142 ~~~~~e~~-~~~~r~~~~~~  160 (208)
                      .-+..|.. |..++ ...|+
T Consensus       381 ~ElgvE~TyPv~E~-tSsGl  399 (480)
T KOG2563|consen  381 FELGVETTYPVAEG-TSSGL  399 (480)
T ss_pred             eeeeeeeccccCCc-cccee
Confidence            77877774 54443 33345

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=87.69  E-value=0.16  Score=43.27  Aligned_cols=124  Identities=22%  Similarity=0.311  Sum_probs=0.0

Q ss_pred             eeecccccccCCchHHHHHHHHHH-HHHhHHHHHHHhhhhhC--chHHHHHHHHHHHHHHHHHh---h-----------h
Q psy2964          55 RRRRDNWVCDGSSNLAITRSIFFL-GSLLGGFILSWVADRYG--RITAVLGSHVVSFLGVALTP---F-----------S  117 (208)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~~~---~-----------~  117 (208)
                      +-.+|++   +...++.+..+..+ +.++|.+++|++..|+.  .|..+.+..+...++.++..   +           .
T Consensus       332 lE~QF~~---sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~  408 (539)
T PF03137_consen  332 LESQFGL---SASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVT  408 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHhCC---CHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecCCCCceeeec
Confidence            3345565   45555555544444 66789999999999774  34444444444444332211   0           0


Q ss_pred             ----------------------------------------ccHHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCchhhhH
Q psy2964         118 ----------------------------------------KDVVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFA  157 (208)
Q Consensus       118 ----------------------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~  157 (208)
                                                              +.+..+++..++.-+..+.........+-...|+++|+.+
T Consensus       409 ~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~~~rs~A  488 (539)
T PF03137_consen  409 VPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCVPPEQRSFA  488 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccCChhhcchh
Confidence                                                    0112233333344444444455555666677899999999


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHhhh
Q psy2964         158 MTFPFLIFYTVSEVALPWIAYYLA  181 (208)
Q Consensus       158 ~~~~~~~~~~~g~~~~~~~~~~~~  181 (208)
                      +|+.+.+...+|.+-+|++-+.+.
T Consensus       489 lGv~~~~~rllg~IPgPIifG~ii  512 (539)
T PF03137_consen  489 LGVQWLIIRLLGFIPGPIIFGAII  512 (539)
T ss_dssp             ------------------------
T ss_pred             hhHHHHHHHhhcCcchHHHHhHHH
Confidence            999766777788888888877764

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=87.26  E-value=17  Score=30.84  Aligned_cols=114  Identities=13%  Similarity=0.028  Sum_probs=68.7

Q ss_pred             chHHHHHHHHHH-HHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh---------cc-----------------
Q psy2964          67 SNLAITRSIFFL-GSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS---------KD-----------------  119 (208)
Q Consensus        67 ~~~~~~~~~~~~-~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---------~~-----------------  119 (208)
                      .....+=....+ +..+......+++|+++|.+++-...........+.++.         ++                 
T Consensus        58 e~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~  137 (491)
T PF03219_consen   58 EVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGF  137 (491)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHH
Confidence            334444333333 445567788999999999998776666655555544432         01                 


Q ss_pred             -----HHHHHHHHHHHhhhhhhHHH-HHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh
Q psy2964         120 -----VVLFSLSRFLTGVGHFNAFI-FYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA  181 (208)
Q Consensus       120 -----~~~~~~~~~l~g~~~~~~~~-~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~  181 (208)
                           .|...+.-.+.-+-.....+ .-|.+.+|.++.++-.+..++ +..+..+|.++++.+...+.
T Consensus       138 i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl-~g~ganigli~sG~~~~~~~  204 (491)
T PF03219_consen  138 IAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPL-FGLGANIGLIFSGQLTSYFS  204 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence                 01111111122222223333 468999999999999999888 77777788777766555543

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=86.66  E-value=17  Score=30.28  Aligned_cols=33  Identities=9%  Similarity=-0.181  Sum_probs=22.7

Q ss_pred             cHHHHHHHHHHHhhhhhhHHHHHHHHHHhhcCCc
Q psy2964         119 DVVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPK  152 (208)
Q Consensus       119 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~~~~  152 (208)
                      .++..++.-++.|++.+........+.+ .+|++
T Consensus       105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~  137 (437)
T TIGR00939       105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPST  137 (437)
T ss_pred             HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHH
Confidence            3555666677888888888777777766 44544

>KOG3097|consensus

Probab=86.61  E-value=0.89  Score=36.20  Aligned_cols=74  Identities=7%  Similarity=-0.010  Sum_probs=53.8

Q ss_pred             HHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHHHHhhc
Q psy2964          75 IFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIVLECV  149 (208)
Q Consensus        75 ~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e~~  149 (208)
                      ...+.-+..+++.+.+..++|-|+++.++......... .=+-+.+..++..-...|++.+..+...-+|+++.-
T Consensus        66 ~~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA-~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g  139 (390)
T KOG3097|consen   66 ALYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIA-ANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMG  139 (390)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-hhcchhHHhhccHHHhhccccccccccCcceecHHH
Confidence            33445566777777999999999999887766544322 112256778888899999999988877777777664

>KOG3574|consensus

Probab=86.36  E-value=8.4  Score=31.76  Aligned_cols=99  Identities=16%  Similarity=0.009  Sum_probs=53.8

Q ss_pred             HHHHHHHH--hHHHHHHHhhh-----hhCchHHH------HHHHHHHHHHHHHH------hhhccHHHHHHHHHHHhhhh
Q psy2964          74 SIFFLGSL--LGGFILSWVAD-----RYGRITAV------LGSHVVSFLGVALT------PFSKDVVLFSLSRFLTGVGH  134 (208)
Q Consensus        74 ~~~~~~~~--~~~~~~g~l~d-----r~Grr~~l------~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~g~~~  134 (208)
                      +++.+++.  --.+++.++.|     |+|||+.-      .+|+.+..++...-      +-.++...+....++.-+..
T Consensus        68 a~fS~ay~P~sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnfla  147 (510)
T KOG3574|consen   68 AIFSFAYWPFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLA  147 (510)
T ss_pred             hhhhhhhhHHHHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHH
Confidence            33444443  34568889999     99999863      33333333322110      01133344434445555555


Q ss_pred             hhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHH
Q psy2964         135 FNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVAL  173 (208)
Q Consensus       135 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~  173 (208)
                      +.=....-.+.-.+..+++-+.+. .+...+...|.+++
T Consensus       148 AtQDIAVDgwALtmLs~e~lgyaS-T~q~Vg~~~GyfL~  185 (510)
T KOG3574|consen  148 ATQDIAVDGWALTMLSRENLGYAS-TCQSVGQTAGYFLG  185 (510)
T ss_pred             hhhhhhhhHHHHHhcCHhhcCchh-HHHHHHHhhhHHhh
Confidence            555556666777777888777764 33555555555444

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=85.18  E-value=19  Score=30.74  Aligned_cols=36  Identities=11%  Similarity=-0.174  Sum_probs=21.0

Q ss_pred             HHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHH
Q psy2964         140 FYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWI  176 (208)
Q Consensus       140 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~  176 (208)
                      ..-.+.-.+.++++++.+- .+.+++...|..++..+
T Consensus       138 AVDGWALT~Ls~~n~~~AS-TcqtvG~~~Gyfls~tv  173 (544)
T PF13000_consen  138 AVDGWALTMLSPENVGYAS-TCQTVGQTAGYFLSFTV  173 (544)
T ss_pred             eeehhhhhhcChhhcchHH-HHHHhHhhhhHHHHHHH
Confidence            3344555566788887773 44565666665555433

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG4332|consensus

Probab=84.40  E-value=18  Score=28.47  Aligned_cols=93  Identities=15%  Similarity=0.059  Sum_probs=64.0

Q ss_pred             hHHHHHHHHHHHHHhHHHHHHHhhhhhCch--HHHHHHHHHHHHHHHHHhhh----c---cHHHHHHHHHHHhhhhhhHH
Q psy2964          68 NLAITRSIFFLGSLLGGFILSWVADRYGRI--TAVLGSHVVSFLGVALTPFS----K---DVVLFSLSRFLTGVGHFNAF  138 (208)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr--~~l~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~l~g~~~~~~~  138 (208)
                      --|.+.+.++++.++|+-++.++..|-..|  +.+.+..++......+....    +   +...-+++..+.-.+.|..+
T Consensus       283 PhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfw  362 (454)
T KOG4332|consen  283 PHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFW  362 (454)
T ss_pred             CchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcc
Confidence            357888899999999999998887655444  34445444444443332221    1   23333555666667788888


Q ss_pred             HHHHHHHHhhcCCchhhhHHhH
Q psy2964         139 IFYYIIVLECVGPKWRTFAMTF  160 (208)
Q Consensus       139 ~~~~~~~~e~~~~~~r~~~~~~  160 (208)
                      |...-.=.+..|.+.|+..+.+
T Consensus       363 PSimkmRsqyIPEearstimNf  384 (454)
T KOG4332|consen  363 PSIMKMRSQYIPEEARSTIMNF  384 (454)
T ss_pred             hHHHHHHHhhCCHHHHhhhhhh
Confidence            9888888899999999988876

>KOG2325|consensus

Probab=84.00  E-value=1.1  Score=37.59  Aligned_cols=64  Identities=13%  Similarity=0.067  Sum_probs=47.9

Q ss_pred             HHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHH
Q psy2964         128 FLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIF  192 (208)
Q Consensus       128 ~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~  192 (208)
                      ++.|.+.........++-+|...++.++...++ ++.....+..++|.+.....   |.++...+.+.
T Consensus       396 ~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~-~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~  462 (488)
T KOG2325|consen  396 VVFGIAFPFISTALDTLYSKILGPRDQGTMQGV-FSISGSIARVVGPIFSTAIFTLSGPRPVWIILLC  462 (488)
T ss_pred             heeccccccccchHHHHHHHHhCCccccceeEE-EEeccchhhhhhHHHHhhhHHhcCccHHHHHHHH
Confidence            456666666667788899999999999999988 77788888888887776654   66655544433

>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.39  E-value=5.7  Score=25.98  Aligned_cols=33  Identities=27%  Similarity=0.400  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHhHHHHHHHhhhhh-CchHHHHH
Q psy2964          70 AITRSIFFLGSLLGGFILSWVADRY-GRITAVLG  102 (208)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~l~~  102 (208)
                      ++-.+.=.++..+.....||+.||| |.+|.-++
T Consensus        45 a~klssefIsGilVGa~iG~llD~~agTsPwglI   78 (116)
T COG5336          45 AFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLI   78 (116)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence            3344555566667777788999987 45554333

>TIGR00805 oat sodium-independent organic anion transporter

Probab=81.55  E-value=2  Score=37.61  Aligned_cols=53  Identities=17%  Similarity=0.136  Sum_probs=37.7

Q ss_pred             cccccccCCchHHHHHHHHHH-HHHhHHHHHHHhhhhhC--chHHHHHHHHHHHHHHHH
Q psy2964          58 RDNWVCDGSSNLAITRSIFFL-GSLLGGFILSWVADRYG--RITAVLGSHVVSFLGVAL  113 (208)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~  113 (208)
                      ++++   +....+++.....+ +.+++.+++|+++||++  .|+.+.++.++..++.++
T Consensus       360 ~~g~---s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~  415 (633)
T TIGR00805       360 QYGI---SSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL  415 (633)
T ss_pred             HcCC---cHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence            4555   56667777766665 56899999999999998  456666666666665443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG0637|consensus

Probab=80.71  E-value=4.3  Score=33.92  Aligned_cols=76  Identities=9%  Similarity=0.036  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHHH
Q psy2964          70 AITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIV  145 (208)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  145 (208)
                      .|-..++.+...+.+...-++.+|+|-|+.+..+...+.++..+.+..++.+....-+...|+-.+....+.+..+
T Consensus       335 ~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~  410 (498)
T KOG0637|consen  335 CLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGAL  410 (498)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHH
Confidence            4556677777788899999999999977777777776777777777777777777777777754444433333333

>KOG3810|consensus

Probab=80.43  E-value=12  Score=30.44  Aligned_cols=93  Identities=5%  Similarity=-0.045  Sum_probs=65.0

Q ss_pred             hHHHHHHHHHHHHHhHHHHHHHhhhhhCch--HHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHHH
Q psy2964          68 NLAITRSIFFLGSLLGGFILSWVADRYGRI--TAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIV  145 (208)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  145 (208)
                      ..|..-++..+.++++.+..|.+.-.|.|.  ..+..+.+..+...+++..+++.|...++-.+.........++...-+
T Consensus       272 yNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~i  351 (433)
T KOG3810|consen  272 YNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQI  351 (433)
T ss_pred             hcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHH
Confidence            345666777788889999999998777665  345555556666666777778888777776666655555556666777


Q ss_pred             HhhcCCchhhhHHhH
Q psy2964         146 LECVGPKWRTFAMTF  160 (208)
Q Consensus       146 ~e~~~~~~r~~~~~~  160 (208)
                      ++....+.-+...|+
T Consensus       352 A~nL~~e~~gLvFGi  366 (433)
T KOG3810|consen  352 ARNLSSELFGLVFGI  366 (433)
T ss_pred             HHhhhhhhheeeeeh
Confidence            777777766666665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	208
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	4e-06
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	1e-04
3k29_A	169	Putative uncharacterized protein; YSCO, type III s	8e-04

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 44.8 bits (105), Expect = 4e-06
 Identities = 12/59 (20%), Positives = 28/59 (47%), Gaps = 14/59 (23%)

Query: 15  PKSKREGRQK-----EEEEEGKKEKKEEEEEK---------KERNEELDRRRRRRRRRD 59
           P+S R+ R++     +E +   K  ++E  EK         + ++E++++ +   R  D
Sbjct: 84  PESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD 142

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 21/138 (15%), Positives = 45/138 (32%), Gaps = 12/138 (8%)

Query: 74  SIFFLGSLLGGFILSWVADRYG-RIT---AVLGSHVVSFLGVALTPFSKDVVLFSLSRFL 129
           S   +      FI+  V+DR   R+     ++ +  V      +   +  + +  +  FL
Sbjct: 69  SGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFL 128

Query: 130 TGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALP----WIAYYLADWQW 185
            G      +      ++     K R   ++  +   + V     P        +  DW  
Sbjct: 129 CGWFQGMGWPPCGRTMVHWWSQKERGGIVSV-WNCAHNVGGGIPPLLFLLGMAWFNDWHA 187

Query: 186 ISVITIFPLIVGLIVAIF 203
              +   P    ++VA+F
Sbjct: 188 ALYM---PAFCAILVALF 202

>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis} Length = 169

 Score = 37.7 bits (86), Expect = 8e-04
 Identities = 10/44 (22%), Positives = 20/44 (45%)

Query: 16  KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRRD 59
           + ++  +QKE      KE +  E E  +R +E ++ R  +    
Sbjct: 90  EEEKVNKQKENVLAASKELERAEVELTKRRKEEEKTRLHKEEWM 133

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	208
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.85
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.83
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.81
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.81
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.76
2xut_A	524	Proton/peptide symporter family protein; transport	99.68
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.52
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.49
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.43
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.36
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.26
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.19
2xut_A	524	Proton/peptide symporter family protein; transport	98.65
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.6

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.85  E-value=2.1e-20  Score=153.43  Aligned_cols=142  Identities=19%  Similarity=0.335  Sum_probs=125.9

Q ss_pred             CchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHh------------------hhccHHHHHHHH
Q psy2964          66 SSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTP------------------FSKDVVLFSLSR  127 (208)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~  127 (208)
                      +...+++.+.+.+|.++|++++|+++||+|||++++++.++..++.++++                  ++++++.++++|
T Consensus        54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R  133 (491)
T 4gc0_A           54 NSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYR  133 (491)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHH
Confidence            34578889999999999999999999999999999999999999998887                  468999999999


Q ss_pred             HHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh-----------hhHHHHHHHHHHHHH
Q psy2964         128 FLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA-----------DWQWISVITIFPLIV  196 (208)
Q Consensus       128 ~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~-----------~w~~~~~~~~~~~~~  196 (208)
                      +++|++.|...+..+.+++|..|+++|++..++ .+.+...|..+++.++....           .|++.+.+..++.++
T Consensus       134 ~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (491)
T 4gc0_A          134 IIGGIGVGLASMLSPMYIAELAPAHIRGKLVSF-NQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALL  212 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHH-HHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHh-hhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhh
Confidence            999999999999999999999999999999988 77788888888877776542           577777777778888


Q ss_pred             HHHHHhccCCCC
Q psy2964         197 GLIVAIFTPESA  208 (208)
Q Consensus       197 ~~~~~~~~petp  208 (208)
                      .++..++.||||
T Consensus       213 ~~~~~~~~peSp  224 (491)
T 4gc0_A          213 FLMLLYTVPESP  224 (491)
T ss_dssp             HHHHGGGSCCCH
T ss_pred             hhhhhhcCCCCh
Confidence            888888999997

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.83  E-value=9.2e-20  Score=147.78  Aligned_cols=152  Identities=13%  Similarity=0.088  Sum_probs=134.9

Q ss_pred             ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhh----hccHHHHHHHH
Q psy2964          52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPF----SKDVVLFSLSR  127 (208)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~  127 (208)
                      .+.+.+++ +   +..+.+++.+++.++..++++++|+++||+|||++++++.++.+++.++.++    +++++.++++|
T Consensus        51 ~~~~~~~~-~---s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  126 (451)
T 1pw4_A           51 MPYLVEQG-F---SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLL  126 (451)
T ss_dssp             HHHTTSST-T---CSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHH
T ss_pred             HHHHHHHh-c---cHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHH
Confidence            45566666 5   6788999999999999999999999999999999999999999999999999    99999999999


Q ss_pred             HHHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---h-hHHHHHHHHHHHHH-HHHHHh
Q psy2964         128 FLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---D-WQWISVITIFPLIV-GLIVAI  202 (208)
Q Consensus       128 ~l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-w~~~~~~~~~~~~~-~~~~~~  202 (208)
                      ++.|++.+...+...+++.|++|+++|++++++ ......+|..++|.+++.+.   + ||+.|++.+++.++ .++.++
T Consensus       127 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~  205 (451)
T 1pw4_A          127 FLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSV-WNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFA  205 (451)
T ss_dssp             HHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHH-HHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhccchHHHHHHHHCCchhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999 78889999999999987753   6 99999988877666 444556


Q ss_pred             ccCCCC
Q psy2964         203 FTPESA  208 (208)
Q Consensus       203 ~~petp  208 (208)
                      ++||+|
T Consensus       206 ~~~~~~  211 (451)
T 1pw4_A          206 MMRDTP  211 (451)
T ss_dssp             HCCCSS
T ss_pred             hccCCH
Confidence            678765

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.81  E-value=1e-18  Score=141.16  Aligned_cols=152  Identities=12%  Similarity=0.059  Sum_probs=131.7

Q ss_pred             ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHH---hhhccHHHHHHHHH
Q psy2964          52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALT---PFSKDVVLFSLSRF  128 (208)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  128 (208)
                      .+.+.+++++   +..+.+++.+++.++..++.++.|+++||+|||++++.+.++.+++.++.   ...++++.+++.|+
T Consensus        49 ~~~~~~~~g~---s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  125 (438)
T 3o7q_A           49 LPQFQQAFTL---TNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLF  125 (438)
T ss_dssp             HHHHHHHSCC---CSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence            4556677777   78889999999999999999999999999999999999999999999988   78899999999999


Q ss_pred             HHhhhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh----h----------------------
Q psy2964         129 LTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA----D----------------------  182 (208)
Q Consensus       129 l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~----------------------  182 (208)
                      +.|++.+...+...+++.|++|+++|++++++ .+....+|..++|.+++.+.    +                      
T Consensus       126 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (438)
T 3o7q_A          126 IIAAGLGCLETAANPFVTVLGPESSGHFRLNL-AQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSL  204 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHH-HHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHhhHHHhhhhHHHHHHHHcCchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhh
Confidence            99999999999999999999999999999998 78899999999999887764    2                      


Q ss_pred             ---hHHHHHHHHHHHHHHHH-HH-hccCCC
Q psy2964         183 ---WQWISVITIFPLIVGLI-VA-IFTPES  207 (208)
Q Consensus       183 ---w~~~~~~~~~~~~~~~~-~~-~~~pet  207 (208)
                         ||+.|++.++..++..+ .. ...||+
T Consensus       205 ~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~  234 (438)
T 3o7q_A          205 VLSVQTPYMIIVAIVLLVALLIMLTKFPAL  234 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence               99999777665554333 22 335665

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.81  E-value=2.3e-19  Score=142.51  Aligned_cols=153  Identities=14%  Similarity=0.130  Sum_probs=136.5

Q ss_pred             ccceeecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHh
Q psy2964          52 RRRRRRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTG  131 (208)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  131 (208)
                      .+.+.++++.   +..+.++..+++.++..+++++.|+++||+|||+++..+.++..++..+..+.++++.+++.|++.|
T Consensus        23 ~~~~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g   99 (375)
T 2gfp_A           23 IADMARDLNV---REGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQG   99 (375)
T ss_dssp             HHHHHTTSSS---TTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            4556667776   6778999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHH-HHhccCCC
Q psy2964         132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLI-VAIFTPES  207 (208)
Q Consensus       132 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~-~~~~~pet  207 (208)
                      ++.+...+....++.|.+|+++|++++++ .+....+|..++|.+++.+.   +||+.+++.++..++..+ ..+.+||+
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (375)
T 2gfp_A          100 MGTGVGGVMARTLPRDLYERTQLRHANSL-LNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPET  178 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSCCSHHHH-HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCC
T ss_pred             HHHHhhhhhHHHHHHHHCCHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCccc
Confidence            99999999999999999999999999999 78899999999999998875   899999988777766554 55667876


Q ss_pred             C
Q psy2964         208 A  208 (208)
Q Consensus       208 p  208 (208)
                      |
T Consensus       179 ~  179 (375)
T 2gfp_A          179 R  179 (375)
T ss_dssp             S
T ss_pred             C
Confidence            4

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.76  E-value=2.9e-17  Score=134.75  Aligned_cols=137  Identities=18%  Similarity=0.123  Sum_probs=122.8

Q ss_pred             ccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhh-hCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhH
Q psy2964          59 DNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADR-YGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNA  137 (208)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~  137 (208)
                      +++   +..+.++..+++.++..++++++|+++|| +|||+++..+.++..++.++++++++++.++++|++.|++.+..
T Consensus        49 ~~~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~  125 (491)
T 4aps_A           49 LHI---TRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFL  125 (491)
T ss_dssp             CCS---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHH
T ss_pred             cCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc
Confidence            665   67789999999999999999999999999 89999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCch--hhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHH
Q psy2964         138 FIFYYIIVLECVGPKW--RTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLI  199 (208)
Q Consensus       138 ~~~~~~~~~e~~~~~~--r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~  199 (208)
                      .+...++++|++|+++  |+.++++ ++....+|..++|.+++.+.   +|++.|++.++..++..+
T Consensus       126 ~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~  191 (491)
T 4aps_A          126 KPNVSTLVGTLYDEHDRRRDAGFSI-FVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLL  191 (491)
T ss_dssp             HHHHHHHHHHHSSSCTTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHcCcccccceeeehH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            9999999999999988  7777777 66788899999999998875   899999987666555443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.68  E-value=1.6e-15  Score=125.42  Aligned_cols=137  Identities=15%  Similarity=0.119  Sum_probs=119.0

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhh-CchHHHHHHHHHHHHHHHHHhhhc-cHHHHHHHHHHHhhhhhhHHHHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRY-GRITAVLGSHVVSFLGVALTPFSK-DVVLFSLSRFLTGVGHFNAFIFYY  142 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~  142 (208)
                      +..+.+++.+++.++..++.+++|+++||+ |||+++..+.++.+++.++..+++ +++.+++.|++.|++.+...+...
T Consensus        52 s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  131 (524)
T 2xut_A           52 RGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVS  131 (524)
T ss_dssp             TTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHH
Confidence            677899999999999999999999999999 999999999999999999999998 999999999999999999999999


Q ss_pred             HHHHhhcCCchhhhHHhHH--HHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHH
Q psy2964         143 IIVLECVGPKWRTFAMTFP--FLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLIVA  201 (208)
Q Consensus       143 ~~~~e~~~~~~r~~~~~~~--~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~  201 (208)
                      +++.|.+|+++|+++.+..  +.....+|..++|.+++.+.   +|++.|++.+++.++..+..
T Consensus       132 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~  195 (524)
T 2xut_A          132 SFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFF  195 (524)
T ss_dssp             HHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence            9999999999997654430  45577788889988887764   89999998877766644443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.52  E-value=8.9e-13  Score=107.95  Aligned_cols=139  Identities=12%  Similarity=0.063  Sum_probs=93.9

Q ss_pred             hHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh----cc-HHHHH-HHHHHHhhhhhhHHHHH
Q psy2964          68 NLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS----KD-VVLFS-LSRFLTGVGHFNAFIFY  141 (208)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----~~-~~~~~-~~~~l~g~~~~~~~~~~  141 (208)
                      .......+..+...++.++.+++.||+|||+.++.+.....++.+..+..    .. ...+. ...+..+++.+ ..+..
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  391 (491)
T 4gc0_A          313 IALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMS-WGPVC  391 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT-TTHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhH-HHHHH
Confidence            34445566677888999999999999999999999988888877655442    12 22222 22222333333 34778


Q ss_pred             HHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---------hhHHHHHHHHHHHHH-HHHHHhccCCCC
Q psy2964         142 YIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---------DWQWISVITIFPLIV-GLIVAIFTPESA  208 (208)
Q Consensus       142 ~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---------~w~~~~~~~~~~~~~-~~~~~~~~petp  208 (208)
                      +.+.+|.+|++.|++++|+.. ....++..+++.+...+.         ++.+.|++.++++++ .++.++++|||.
T Consensus       392 ~~~~~E~fPt~~R~~~~g~~~-~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETk  467 (491)
T 4gc0_A          392 WVLLSEIFPNAIRGKALAIAV-AAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK  467 (491)
T ss_dssp             HHHHHHSSCTTTHHHHHHHHH-HHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred             HHHHHHhCCHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence            899999999999999999954 455566666655543332         344566776666666 555678899984

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.49  E-value=7.8e-13  Score=106.61  Aligned_cols=140  Identities=9%  Similarity=0.015  Sum_probs=111.2

Q ss_pred             hHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHHHHh
Q psy2964          68 NLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIVLE  147 (208)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~e  147 (208)
                      ..++..++..++..++.++.++++||+|||+.+..+.++.++...+.++.++.+.+.+..++.+++.+...+..+.+++|
T Consensus       260 ~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  339 (417)
T 2cfq_A          260 VFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITS  339 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44666677777888999999999999999999999888888877777777777777777777787777666777899999


Q ss_pred             hcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHH-HHhccCCC
Q psy2964         148 CVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIVGLI-VAIFTPES  207 (208)
Q Consensus       148 ~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~-~~~~~pet  207 (208)
                      .+|++.|+++.++.++....+|..++|.+.+.+.   ++...|.+.+++.+++.+ .++..||+
T Consensus       340 ~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~  403 (417)
T 2cfq_A          340 QFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP  403 (417)
T ss_dssp             HSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred             HCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence            9999999999887446677789999999988765   567777777777666544 34556665

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.43  E-value=6.4e-12  Score=101.54  Aligned_cols=135  Identities=15%  Similarity=0.157  Sum_probs=111.6

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhh--CchHHHHHHHHHHH-HHHHHHhhh--ccHHHHHHHHHHHhhhhhhHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRY--GRITAVLGSHVVSF-LGVALTPFS--KDVVLFSLSRFLTGVGHFNAFI  139 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Grr~~l~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~  139 (208)
                      +....++..++..++..++.++.|++.||+  |||+.+..+..+.. ++..+..+.  .+.+...+..++.|++.+...+
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  365 (451)
T 1pw4_A          286 ALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVM  365 (451)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHH
Confidence            556788889999999999999999999999  99999888877766 565555555  3677777888899998888888


Q ss_pred             HHHHHHHhhcCCchhhhHHhHHHHHHHHH-HHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHH
Q psy2964         140 FYYIIVLECVGPKWRTFAMTFPFLIFYTV-SEVALPWIAYYLA---DWQWISVITIFPLIVGLIV  200 (208)
Q Consensus       140 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~~-g~~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~  200 (208)
                      ....++.|.+|++.|++++++ .+....+ |..++|.+.+.+.   +|+..+++.+++.+++.+.
T Consensus       366 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  429 (451)
T 1pw4_A          366 LIGLHALELAPKKAAGTAAGF-TGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVIL  429 (451)
T ss_dssp             HHHHHHHHTSCTTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhchhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence            889999999999999999999 6667777 9999999888775   7888888877666654443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.36  E-value=9.3e-12  Score=100.30  Aligned_cols=135  Identities=11%  Similarity=0.143  Sum_probs=107.6

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYII  144 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  144 (208)
                      +....++..+++.++..++.++.|+++||+|||+.+..+.++..++.++..+.++.+.... .++.|++.+...+....+
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~  371 (438)
T 3o7q_A          293 TAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIA-LTLCSAFMSIQYPTIFSL  371 (438)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHTTHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            5667888889999999999999999999999999999999999888888887777655444 478888888888999999


Q ss_pred             HHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---h-hHHHHHHHHHHHHHHHHHHhc
Q psy2964         145 VLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---D-WQWISVITIFPLIVGLIVAIF  203 (208)
Q Consensus       145 ~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-w~~~~~~~~~~~~~~~~~~~~  203 (208)
                      ..|.+|++ |+.+.++ .. ...+|..++|.+.+.+.   + ++..+++.++..++..+..+.
T Consensus       372 ~~~~~~~~-~~~~~~~-~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  431 (438)
T 3o7q_A          372 GIKNLGQD-TKYGSSF-IV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFARF  431 (438)
T ss_dssp             HHSSCGGG-HHHHHHH-HH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHHTT
T ss_pred             HHhhcccc-ccchhhH-HH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            99999866 8888777 34 45588889998888775   5 777777765555554444333

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.26  E-value=5.5e-13  Score=107.53  Aligned_cols=145  Identities=14%  Similarity=0.012  Sum_probs=88.9

Q ss_pred             ecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHH---HHhhhccH-HHHHHHHHHHhh
Q psy2964          57 RRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVA---LTPFSKDV-VLFSLSRFLTGV  132 (208)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~l~g~  132 (208)
                      +++++   +..+.+++.+++.++..++++++|+++||+|||++++.+..+..+...   ...+.+.. ......+.+.++
T Consensus        36 ~~~g~---s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (417)
T 2cfq_A           36 DINHI---SKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGI  112 (417)
T ss_dssp             TTTCC---CTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGS
T ss_pred             HHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34666   677899999999999999999999999999999999988877654221   11121111 112234455554


Q ss_pred             hhhhHHHHHHHHHHhhcCC--chhhhHHhHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHhccC
Q psy2964         133 GHFNAFIFYYIIVLECVGP--KWRTFAMTFPFLIFYTVSEVALPWIAYYLA--DWQWISVITIFPLIVGLIVAIFTP  205 (208)
Q Consensus       133 ~~~~~~~~~~~~~~e~~~~--~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~--~w~~~~~~~~~~~~~~~~~~~~~p  205 (208)
                      +.+...+.......+..++  ++|+...+. ......+|..++|.+++++.  +|++.|++.++..++..+..++.|
T Consensus       113 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~  188 (417)
T 2cfq_A          113 YLGFCFNAGAPAVEAFIEKVSRRSNFEFGR-ARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAK  188 (417)
T ss_dssp             STTHHHHTTHHHHHHHHHHHHHHHTCCHHH-HSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHHSCSSC
T ss_pred             HHHHHHhhhHHHHHHHHHHhhhhcccchHH-HHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHcC
Confidence            4443333323333333322  344554554 33345667778888877765  789988876665544444444443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.19  E-value=8.4e-11  Score=96.25  Aligned_cols=129  Identities=9%  Similarity=-0.020  Sum_probs=100.5

Q ss_pred             chHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHH-----HHHHHHHHHHHHHhhhc---------cHHHHHHHHHHHhh
Q psy2964          67 SNLAITRSIFFLGSLLGGFILSWVADRYGRITAVL-----GSHVVSFLGVALTPFSK---------DVVLFSLSRFLTGV  132 (208)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~-----~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~g~  132 (208)
                      ...++..+...++..++.++.+++.||+|||+...     .+..+.+++..+.....         +.+.+.+..++.|+
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~  398 (491)
T 4aps_A          319 FPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVIL  398 (491)
T ss_dssp             SCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHH
T ss_pred             cCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHH
Confidence            45566677788888999999999999999987655     66666666665555432         66677778889999


Q ss_pred             hhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHH
Q psy2964         133 GHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA--DWQWISVITIFPLIV  196 (208)
Q Consensus       133 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~--~w~~~~~~~~~~~~~  196 (208)
                      +.+...+..+.++.|.+|++.|+.++|+ ......+|..++|.+.+.+.  ++.+.+.+.++..++
T Consensus       399 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~-~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  463 (491)
T 4aps_A          399 GEMLISPVGLSVTTKLAPKAFNSQMMSM-WFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVV  463 (491)
T ss_dssp             HHHTTTTHHHHHHHHHTTTTCSSSSTHH-HHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHH
T ss_pred             HHHHHhHHHHHHHHHhCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            9888888999999999999999999999 67788899999999988876  555666666555554

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.65  E-value=5.6e-08  Score=80.14  Aligned_cols=112  Identities=13%  Similarity=0.015  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHhh----hhhCc----hHHHHHHHHHHHHHHHHHhhh---------ccHHHHHHHHHHHh
Q psy2964          69 LAITRSIFFLGSLLGGFILSWVA----DRYGR----ITAVLGSHVVSFLGVALTPFS---------KDVVLFSLSRFLTG  131 (208)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~g~l~----dr~Gr----r~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~g  131 (208)
                      .+.......++..++.++.+++.    ||.|+    ++.+..+.++.+++.++.+..         .+.+.+.+..++.|
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  416 (524)
T 2xut_A          337 PAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLT  416 (524)
T ss_dssp             HHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHH
Confidence            34444444445555555555543    45443    345667777777777666553         35666777888999


Q ss_pred             hhhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh
Q psy2964         132 VGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA  181 (208)
Q Consensus       132 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~  181 (208)
                      ++.+...+..+.++.|..|++.|++++|+ .+....+|..++|.+.+.+.
T Consensus       417 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~-~~~~~~~g~~~g~~~~g~~~  465 (524)
T 2xut_A          417 FGEVLVSATGLEFAYSQAPKAMKGTIMSF-WTLSVTVGNLWVLLANVSVK  465 (524)
T ss_dssp             HHHHHHHHHHTTTHHHHCCTTCCTTTHHH-HGGGHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHHhHHHHH-HHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999 67788899999999988875

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.60  E-value=1.3e-08  Score=80.26  Aligned_cols=121  Identities=12%  Similarity=0.047  Sum_probs=87.5

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHH-HHHHHH--HHhh--hccHHHHHHHHHHHhhhhhhHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVV-SFLGVA--LTPF--SKDVVLFSLSRFLTGVGHFNAFI  139 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~-~~~~~~--~~~~--~~~~~~~~~~~~l~g~~~~~~~~  139 (208)
                      +....+...+...++..++.++.+++.||+|++.  ..+... ...+..  ....  .++.+.+.+..++.|++.+...+
T Consensus       233 ~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~  310 (375)
T 2gfp_A          233 SSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFP  310 (375)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhH
Confidence            4566788888899999999999999999998832  333322 222211  1111  13566666778888999888889


Q ss_pred             HHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHH
Q psy2964         140 FYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVI  189 (208)
Q Consensus       140 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~  189 (208)
                      ....++.|..| ++|+++.++ .+....+|..++|.+.+.+.   ++...+.+
T Consensus       311 ~~~~~~~~~~p-~~~g~~~g~-~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~  361 (375)
T 2gfp_A          311 LATSGAMEPFP-FLAGTAGAL-VGGLQNIGSGVLASLSAMLPQTGQGSLGLLM  361 (375)
T ss_dssp             TTHHHHHTHHH-HHHHHHHHH-HHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCC-cccchHHHH-HHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence            99999999998 899999999 67777888888887777664   44444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	208
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	5e-11
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	1e-06
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	4e-04
d1sa0e_	138	a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus	9e-04
d1f5na1	300	a.114.1.1 (A:284-583) Interferon-induced guanylate	0.003
d1f5na1	300	a.114.1.1 (A:284-583) Interferon-induced guanylate	0.003

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 58.9 bits (141), Expect = 5e-11
 Identities = 18/142 (12%), Positives = 41/142 (28%), Gaps = 4/142 (2%)

Query: 66  SSNLAITRSIFFLGSLLGGFILSWVADRYGR----ITAVLGSHVVSFLGVALTPFSKDVV 121
             +L    S   +      FI+  V+DR          ++ +  V      +   +  + 
Sbjct: 58  RGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIA 117

Query: 122 LFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA 181
           +  +  FL G      +      ++     K R   ++           +        +A
Sbjct: 118 VMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA 177

Query: 182 DWQWISVITIFPLIVGLIVAIF 203
            +         P    ++VA+F
Sbjct: 178 WFNDWHAALYMPAFCAILVALF 199

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 45.9 bits (107), Expect = 1e-06
 Identities = 16/135 (11%), Positives = 34/135 (25%), Gaps = 5/135 (3%)

Query: 74  SIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVG 133
           +   L SLL   +   ++D+ G    +L       +  A         L   +  +  + 
Sbjct: 50  AAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIV 109

Query: 134 HFNAFIFYYIIVLECV-----GPKWRTFAMTFPFLIFYTVSEVALPWIAYYLADWQWISV 188
                 F +      V         R+        +F  V       I   +       V
Sbjct: 110 GGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFV 169

Query: 189 ITIFPLIVGLIVAIF 203
             +      ++  + 
Sbjct: 170 FWLGSGCALILAVLL 184

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 38.2 bits (87), Expect = 4e-04
 Identities = 15/148 (10%), Positives = 51/148 (34%), Gaps = 3/148 (2%)

Query: 60  NWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKD 119
                G+       ++  L +    F    + +R G   A+L +  +  + +  + F+  
Sbjct: 252 ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATS 311

Query: 120 VVLFSLSRFLTGVGHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYY 179
            +   + + L         +  +  +      ++        F  F  ++ + +  +A  
Sbjct: 312 ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGN 371

Query: 180 LAD---WQWISVITIFPLIVGLIVAIFT 204
           + +   +Q   ++     +   ++++FT
Sbjct: 372 MYESIGFQGAYLVLGLVALGFTLISVFT 399

>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All alpha proteins
fold: Non-globular all-alpha subunits of globular proteins
superfamily: Stathmin
family: Stathmin
domain: Stathmin 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.0 bits (83), Expect = 9e-04
 Identities = 9/37 (24%), Positives = 13/37 (35%)

Query: 22  RQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRRR 58
           +  EE     K  KE+  +K E N+E           
Sbjct: 82  KAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLE 118

>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300

class: All alpha proteins
fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (81), Expect = 0.003
 Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 16  KSKREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRR 57
           K + +  Q  +E+E     K +E+E+  + E   +  R  + 
Sbjct: 251 KMENDRVQLLKEQERTLALKLQEQEQLLK-EGFQKESRIMKN 291

>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300

class: All alpha proteins
fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (80), Expect = 0.003
 Identities = 6/40 (15%), Positives = 20/40 (50%)

Query: 18  KREGRQKEEEEEGKKEKKEEEEEKKERNEELDRRRRRRRR 57
             E +++  +E  K+  ++ E ++ +  +E +R    + +
Sbjct: 233 MMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQ 272

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	208
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.8
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.58
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.36
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.28

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=4.3e-19  Score=141.30  Aligned_cols=147  Identities=14%  Similarity=0.104  Sum_probs=126.0

Q ss_pred             ecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhh----ccHHHHHHHHHHHhh
Q psy2964          57 RRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFS----KDVVLFSLSRFLTGV  132 (208)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~g~  132 (208)
                      .++++   +..+.+++.+++.++..++++++|+++||+|||+++..+.++.+++.+++++.    ++++.+++.|++.|+
T Consensus        52 ~~~g~---s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  128 (447)
T d1pw4a_          52 VEQGF---SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGW  128 (447)
T ss_dssp             TSSTT---CSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHH
T ss_pred             HHhCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHH
Confidence            45676   78899999999999999999999999999999999999999999988887765    477889999999999


Q ss_pred             hhhhHHHHHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHH-HHHHHhccCCC
Q psy2964         133 GHFNAFIFYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA----DWQWISVITIFPLIV-GLIVAIFTPES  207 (208)
Q Consensus       133 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~----~w~~~~~~~~~~~~~-~~~~~~~~pet  207 (208)
                      +.+...+....++.|++|+++|++++++ ++.+..+|..++|.++....    +|++.+++.+++.++ .++.+++.+|+
T Consensus       129 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  207 (447)
T d1pw4a_         129 FQGMGWPPCGRTMVHWWSQKERGGIVSV-WNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDT  207 (447)
T ss_dssp             HHHHTHHHHHHHHHTTCTTTHHHHHHHH-HHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCS
T ss_pred             hhhhhhhHHHHHHHHHHHhhcccccccc-cccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccc
Confidence            9999999999999999999999999999 77788899888887776543    899988887766655 44455555554

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=2.7e-14  Score=111.09  Aligned_cols=139  Identities=10%  Similarity=0.041  Sum_probs=118.1

Q ss_pred             chHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q psy2964          67 SNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLFSLSRFLTGVGHFNAFIFYYIIVL  146 (208)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~  146 (208)
                      ...+.......++..++..+.+++.||+|||+.+..+.++.+++.++..+.++.+.+.+..++.|++.+...+....++.
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~  338 (417)
T d1pv7a_         259 RVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYIT  338 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556667778888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHH-HHHHHhccC
Q psy2964         147 ECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIV-GLIVAIFTP  205 (208)
Q Consensus       147 e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~-~~~~~~~~p  205 (208)
                      |.+|++.|++..++..+....+|..++|.+.+++.   |++..+++.+++.++ .++..+.++
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~  401 (417)
T d1pv7a_         339 SQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS  401 (417)
T ss_dssp             HHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999998556677789999998888775   788888887766655 333444443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=5.7e-11  Score=93.57  Aligned_cols=132  Identities=15%  Similarity=0.097  Sum_probs=97.2

Q ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHH---Hhh--hccHHHHHHHHHHHhhhhhhHHH
Q psy2964          65 GSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVAL---TPF--SKDVVLFSLSRFLTGVGHFNAFI  139 (208)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~l~g~~~~~~~~  139 (208)
                      +....+....+..++..++.++.|++.||++||+..........+....   ...  ..+.+...++.++.|++.+...+
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  362 (447)
T d1pw4a_         283 ALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVM  362 (447)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHH
T ss_pred             ccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHH
Confidence            4556788888999999999999999999999876544433333322222   111  34677777788888988888888


Q ss_pred             HHHHHHHhhcCCchhhhHHhHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHH
Q psy2964         140 FYYIIVLECVGPKWRTFAMTFPFLIFYTVSEVALPWIAYYLA---DWQWISVITIFPLIV  196 (208)
Q Consensus       140 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~---~w~~~~~~~~~~~~~  196 (208)
                      ....+..|.+|++.|+++.|+........|..++|.+.+.+.   ||+..+++.....++
T Consensus       363 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~  422 (447)
T d1pw4a_         363 LIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSIL  422 (447)
T ss_dssp             HHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence            999999999999999999998434344446677888877764   788887776555544

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.28  E-value=2e-11  Score=94.44  Aligned_cols=149  Identities=14%  Similarity=0.002  Sum_probs=96.9

Q ss_pred             eecccccccCCchHHHHHHHHHHHHHhHHHHHHHhhhhhCchHHHHHHHHHHHHHHHHHhhhccHHHH----HHHHHHHh
Q psy2964          56 RRRDNWVCDGSSNLAITRSIFFLGSLLGGFILSWVADRYGRITAVLGSHVVSFLGVALTPFSKDVVLF----SLSRFLTG  131 (208)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~g  131 (208)
                      .+++++   +..+.+++.+++.++..++++++|+++||+|||++++++..+..++..+.....+....    +..+.+.+
T Consensus        35 ~~~~g~---s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (417)
T d1pv7a_          35 HDINHI---SKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGG  111 (417)
T ss_dssp             HHHHCC---CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTT
T ss_pred             HHccCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhh
Confidence            345666   77889999999999999999999999999999999999998888888777776544332    34444444


Q ss_pred             hhhhhHHHHHHHHHHhhcCC--chhhhHHhHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHH-HHHHHHHHHhccCC
Q psy2964         132 VGHFNAFIFYYIIVLECVGP--KWRTFAMTFPFLIFYTVSEVALPWIAYYLA--DWQWISVITIF-PLIVGLIVAIFTPE  206 (208)
Q Consensus       132 ~~~~~~~~~~~~~~~e~~~~--~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~--~w~~~~~~~~~-~~~~~~~~~~~~pe  206 (208)
                      .+.+...........+..++  +.+....+. .......+..++|.+++.+.  +|+..+..... ..+...+..+..+|
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (417)
T d1pv7a_         112 IYLGFCFNAGAPAVEAFIEKVSRRSNFEFGR-ARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTD  190 (417)
T ss_dssp             TTGGGGGTTHHHHHHHHHHHHHHHHSCCHHH-HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             hcccccccchhhcccccccchhhhhHHHHHH-HhhhhccccccccccccccccccccccccchhhHHHHHHHHHHHHhcc
Confidence            44444333333333333222  223333334 44566677788888887776  45555554444 34445555666665


Q ss_pred             CC
Q psy2964         207 SA  208 (208)
Q Consensus       207 tp  208 (208)
                      +|
T Consensus       191 ~~  192 (417)
T d1pv7a_         191 AP  192 (417)
T ss_dssp             SC
T ss_pred             cc
Confidence            43